Query psy8931
Match_columns 95
No_of_seqs 109 out of 681
Neff 6.2
Searched_HMMs 29240
Date Fri Aug 16 23:07:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8931.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8931hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ogh_A Eukaryotic translation 100.0 3.4E-29 1.2E-33 165.7 10.8 86 2-88 21-107 (108)
2 2xzm_F EIF1; ribosome, transla 100.0 4.2E-29 1.4E-33 163.6 9.8 82 4-87 16-99 (101)
3 2if1_A EIF1, SUI1; translation 99.9 5.8E-28 2E-32 163.6 6.1 84 2-87 39-124 (126)
4 1d1r_A Hypothetical 11.4 KD pr 99.9 3.4E-26 1.2E-30 153.0 4.2 79 4-88 30-110 (116)
5 2d74_B Translation initiation 95.2 0.037 1.3E-06 37.8 5.3 61 4-73 32-96 (148)
6 1nee_A EIF-2-beta, probable tr 94.7 0.014 4.9E-07 39.4 2.1 51 15-71 38-92 (138)
7 1k8b_A EIF-2-beta, probable tr 93.9 0.054 1.9E-06 30.8 3.0 46 13-64 3-52 (52)
8 2fhm_A Probable acylphosphatas 93.8 0.47 1.6E-05 29.1 7.5 64 22-87 7-72 (91)
9 1gxu_A Hydrogenase maturation 93.3 0.66 2.2E-05 28.6 7.7 62 22-86 12-73 (91)
10 2e9h_A EIF-5, eukaryotic trans 92.5 0.092 3.1E-06 36.1 3.0 67 4-73 25-95 (157)
11 1urr_A CG18505 protein; acylph 91.1 1.4 4.8E-05 27.6 7.4 64 22-87 16-82 (102)
12 2lxf_A Uncharacterized protein 91.1 0.86 2.9E-05 29.8 6.5 62 23-87 40-104 (121)
13 2vh7_A Acylphosphatase-1; hydr 90.4 1.8 6.1E-05 26.9 7.3 63 22-86 13-78 (99)
14 3trg_A Acylphosphatase; fatty 90.2 1.9 6.6E-05 26.8 7.3 63 22-86 17-81 (98)
15 1ulr_A Putative acylphosphatas 90.2 2 6.9E-05 26.1 8.0 62 22-86 7-71 (88)
16 2bjd_A Acylphosphatase; hypert 90.0 1.9 6.4E-05 27.0 7.2 62 22-85 19-82 (101)
17 2g2k_A EIF-5, eukaryotic trans 89.7 0.079 2.7E-06 36.9 0.5 68 4-74 18-89 (170)
18 1w2i_A Acylphosphatase; hydrol 89.1 2.3 7.8E-05 26.0 7.0 63 22-86 9-73 (91)
19 3hyi_A Protein DUF199/WHIA; la 87.3 3.1 0.00011 31.0 7.9 54 32-86 107-164 (295)
20 2gv1_A Probable acylphosphatas 85.1 2.3 8E-05 26.0 5.3 51 22-73 9-62 (92)
21 1aps_A Acylphosphatase; hydrol 81.6 1.5 5E-05 27.2 3.3 52 22-75 12-64 (98)
22 3cw2_K Translation initiation 78.5 0.027 9.1E-07 38.1 -5.9 54 13-71 36-93 (139)
23 2y3m_A Emhofq, protein transpo 74.3 7.3 0.00025 25.7 5.4 58 27-85 111-174 (175)
24 2hl7_A Cytochrome C-type bioge 65.2 0.66 2.3E-05 28.7 -1.4 44 35-78 22-74 (84)
25 3vth_A Hydrogenase maturation 65.0 20 0.00068 29.8 7.0 63 22-86 15-79 (761)
26 2gx5_A GTP-sensing transcripti 62.4 8.6 0.00029 26.4 3.7 56 29-85 30-87 (170)
27 2kw0_A CCMH protein; oxidoredu 61.7 0.63 2.2E-05 29.2 -2.0 44 35-78 19-71 (90)
28 1m5q_A SMAP3, small nuclear ri 59.5 29 0.00098 22.6 5.8 54 19-75 58-124 (130)
29 1n91_A ORF, hypothetical prote 55.4 9.2 0.00032 24.4 2.7 26 62-87 48-73 (108)
30 3djh_A Macrophage migration in 53.3 9.6 0.00033 23.6 2.6 30 57-86 59-96 (114)
31 3kan_A D-dopachrome tautomeras 50.5 11 0.00038 23.6 2.5 20 67-86 78-97 (117)
32 3abf_A 4-oxalocrotonate tautom 47.9 16 0.00055 19.6 2.7 21 66-86 21-41 (64)
33 4dh4_A MIF; trimer, isomerase; 47.7 13 0.00046 22.8 2.6 22 65-86 76-97 (114)
34 2x4k_A 4-oxalocrotonate tautom 44.4 15 0.00053 19.3 2.2 21 66-86 23-43 (63)
35 4hhu_A OR280; engineered prote 44.0 33 0.0011 22.8 4.1 61 15-75 39-103 (170)
36 3td3_A Outer membrane protein 43.8 18 0.0006 22.5 2.7 23 66-88 71-93 (123)
37 1otf_A 4-oxalocrotonate tautom 43.7 16 0.00054 19.4 2.2 22 65-86 19-40 (62)
38 3fwu_A Macrophage migration in 43.5 16 0.00056 23.4 2.6 22 65-86 97-118 (133)
39 2opa_A Probable tautomerase YW 42.8 17 0.00058 19.3 2.2 21 66-86 20-40 (61)
40 3t5s_A Gilaa.00834.A, macropha 42.8 17 0.00058 23.4 2.6 23 64-86 96-118 (135)
41 3fwt_A Macrophage migration in 42.7 17 0.00058 23.3 2.6 22 65-86 97-118 (133)
42 3gxs_A Phenylacetate-coenzyme 37.4 24 0.00084 21.2 2.6 70 18-88 4-88 (109)
43 4e9j_A General secretion pathw 36.3 53 0.0018 22.8 4.5 53 29-82 121-175 (246)
44 3ry0_A Putative tautomerase; o 36.0 25 0.00084 19.2 2.2 21 66-86 20-40 (65)
45 1sse_B AP-1 like transcription 35.3 19 0.00065 22.2 1.8 22 27-48 45-67 (86)
46 3u7q_B Nitrogenase molybdenum- 34.4 10 0.00035 30.0 0.5 66 16-82 220-314 (523)
47 3mb2_A 4-oxalocrotonate tautom 34.4 30 0.001 19.3 2.5 21 66-86 21-41 (72)
48 3b64_A Macrophage migration in 33.5 30 0.001 20.9 2.6 22 65-86 76-97 (112)
49 1in0_A YAJQ protein, HI1034; a 33.0 67 0.0023 22.0 4.4 64 17-86 93-161 (163)
50 1hfo_A Migration inhibitory fa 32.9 31 0.0011 20.8 2.6 30 57-86 59-96 (113)
51 2hqs_H Peptidoglycan-associate 32.6 33 0.0011 21.2 2.7 21 66-87 63-83 (118)
52 1uiz_A MIF, macrophage migrati 31.6 34 0.0012 20.7 2.6 30 57-86 60-97 (115)
53 2wkb_A Macrophage migration in 30.5 36 0.0012 21.1 2.6 22 65-86 76-97 (125)
54 2xcz_A Possible ATLS1-like lig 30.4 37 0.0013 20.6 2.6 30 57-86 60-97 (115)
55 2os5_A Acemif; macrophage migr 30.3 37 0.0013 20.8 2.6 30 57-86 60-97 (119)
56 3m21_A Probable tautomerase HP 30.1 35 0.0012 18.7 2.2 21 66-86 23-43 (67)
57 3hlu_A Uncharacterized protein 29.8 94 0.0032 18.7 6.6 65 15-87 6-78 (96)
58 3m20_A 4-oxalocrotonate tautom 29.6 39 0.0013 18.3 2.4 21 66-86 19-39 (62)
59 1dd4_C 50S ribosomal protein L 29.4 37 0.0013 17.8 2.1 16 67-82 19-34 (40)
60 1gyx_A YDCE, B1461, hypothetic 28.8 37 0.0012 19.2 2.2 22 65-86 20-41 (76)
61 3ej9_A Alpha-subunit of trans- 28.0 39 0.0013 19.3 2.2 21 66-86 21-41 (76)
62 3pdi_A Nitrogenase MOFE cofact 27.5 40 0.0014 26.1 2.8 62 18-80 204-276 (483)
63 1mms_A Protein (ribosomal prot 27.4 75 0.0026 21.0 3.8 52 26-81 27-86 (140)
64 3ezj_A General secretion pathw 26.8 1E+02 0.0036 21.1 4.7 50 30-80 181-241 (241)
65 1x10_A Pyrrolidone-carboxylate 25.9 90 0.0031 21.5 4.2 51 21-75 3-58 (208)
66 3ro0_A Pyrrolidone-carboxylate 25.7 1.1E+02 0.0038 21.4 4.7 50 22-75 6-60 (223)
67 4g9i_A Hydrogenase maturation 25.4 56 0.0019 27.1 3.4 43 22-65 7-50 (772)
68 4hps_A Pyrrolidone-carboxylate 24.8 98 0.0034 21.8 4.3 51 21-75 26-81 (228)
69 2aiz_P Outer membrane protein 24.6 55 0.0019 20.7 2.7 21 66-87 87-107 (134)
70 2wyq_A HHR23A, UV excision rep 24.5 99 0.0034 17.2 4.5 78 2-89 1-80 (85)
71 2ftc_G L11MT, MRP-L11, 39S rib 24.3 1.1E+02 0.0036 20.3 4.1 53 26-82 27-88 (145)
72 1jrm_A MTH0637, conserved hypo 24.3 1.3E+02 0.0046 18.6 5.3 44 34-79 54-101 (104)
73 3pgv_A Haloacid dehalogenase-l 24.0 1.7E+02 0.0059 19.8 7.1 57 33-89 176-233 (285)
74 1wib_A 60S ribosomal protein L 23.8 84 0.0029 19.4 3.3 35 26-65 38-73 (92)
75 2kgw_A Outer membrane protein 23.1 56 0.0019 20.3 2.5 22 65-87 80-101 (129)
76 3dhx_A Methionine import ATP-b 22.8 1.2E+02 0.0042 18.3 4.0 28 57-85 67-96 (106)
77 1mio_A Nitrogenase molybdenum 22.3 34 0.0012 27.0 1.5 66 16-82 205-281 (533)
78 2nlv_A XISI protein-like; XISI 22.3 49 0.0017 21.2 2.0 29 57-86 67-96 (112)
79 3s06_A Motility protein B; pep 21.9 64 0.0022 21.0 2.7 22 65-87 93-114 (166)
80 3pdi_B Nitrogenase MOFE cofact 21.8 57 0.002 25.0 2.7 65 16-82 168-263 (458)
81 3d7q_A XISI protein-like; stru 21.6 49 0.0017 21.2 1.9 29 57-86 67-96 (112)
82 2diu_A KIAA0430 protein; struc 21.4 1.2E+02 0.0041 18.7 3.7 36 20-56 11-47 (96)
83 2b30_A Pvivax hypothetical pro 21.4 2.1E+02 0.0072 19.8 7.3 58 32-89 190-248 (301)
84 2nwv_A XISI protein-like; YP_3 21.3 52 0.0018 21.1 2.0 29 57-86 69-98 (114)
85 3lax_A Phenylacetate-coenzyme 21.2 91 0.0031 18.3 3.1 67 20-87 6-87 (109)
86 3cyp_B Chemotaxis protein MOTB 20.9 71 0.0024 20.2 2.7 22 65-87 65-86 (138)
87 3dzc_A UDP-N-acetylglucosamine 20.8 77 0.0026 23.2 3.2 60 13-82 21-80 (396)
88 2cpq_A FragIle X mental retard 20.6 53 0.0018 20.1 1.9 45 38-84 38-89 (91)
89 2dsm_A Hypothetical protein YQ 20.6 33 0.0011 20.4 0.9 37 45-83 24-62 (72)
90 3lac_A Pyrrolidone-carboxylate 20.5 1.4E+02 0.0048 20.7 4.3 50 22-75 5-59 (215)
91 1nf2_A Phosphatase; structural 20.4 2E+02 0.0069 19.3 5.3 57 33-89 157-214 (268)
92 4dw8_A Haloacid dehalogenase-l 20.1 2E+02 0.0069 19.1 5.6 57 33-89 164-221 (279)
93 3cjs_B 50S ribosomal protein L 20.0 1.2E+02 0.0041 17.7 3.3 36 26-65 27-63 (72)
No 1
>2ogh_A Eukaryotic translation initiation factor EIF-1; alpha-beta protein; NMR {Saccharomyces cerevisiae}
Probab=99.96 E-value=3.4e-29 Score=165.68 Aligned_cols=86 Identities=23% Similarity=0.302 Sum_probs=80.2
Q ss_pred CCCccEEEEEeeecCCeeEEEEecccCCCCCHHHHHHHHhhhcccceEEeeCCCC-cEEEEcCChHHHHHHHHhhhcCCC
Q psy8931 2 GKLKPIDLQVATRSGNKKVTLVNNLDVYGIDLKEFCKLCQHGVAASTCINMVNNA-AQVQVQGNQIVFVHNLLTEKFNIQ 80 (95)
Q Consensus 2 G~~~~I~I~~~~R~g~K~vT~V~Gle~f~idl~~lak~lkk~~acs~sv~~~~g~-~eI~iQGd~~~~v~~~L~~~~gip 80 (95)
|+.++|+|++++|+|||.||+|+||+. ++|+++||++|+++||||+||.+.|+. .+|+|||||++.|.+||.++..+|
T Consensus 21 ~~~~~V~Ir~~~R~g~K~VT~V~Gl~~-~~dlk~lak~lKkk~acggsV~~~~~~g~~I~iQGD~r~~v~~~L~~~g~~~ 99 (108)
T 2ogh_A 21 ATSNYIHIRIQQRNGRKTLTTVQGVPE-EYDLKRILKVLKKDFACNGNIVKDPEMGEIIQLQGDQRAKVCEFMISQLGLQ 99 (108)
T ss_dssp CCSCSEEEEEECCSSSCCEEEEECCCT-TSCHHHHHHHHHHHHCCCEEEECCTTSSCEEEEESSCHHHHHHHHHHHHTSC
T ss_pred CCCCeEEEEEEEccCCceEEEEeCCCc-chhHHHHHHHHHHHhcCceEEecCCCCceEEEEcCCHHHHHHHHHHHcCCCC
Confidence 678999999999999999999999997 999999999999999999999998776 799999999999999999976679
Q ss_pred cCceEEcc
Q psy8931 81 KRFIRGLE 88 (95)
Q Consensus 81 ~~~I~~~~ 88 (95)
+++|++..
T Consensus 100 ~~~I~vhg 107 (108)
T 2ogh_A 100 KKNIKIHG 107 (108)
T ss_dssp CSCEEECC
T ss_pred HHHEEEcC
Confidence 99999853
No 2
>2xzm_F EIF1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_F
Probab=99.96 E-value=4.2e-29 Score=163.62 Aligned_cols=82 Identities=18% Similarity=0.232 Sum_probs=76.8
Q ss_pred CccEEEEEeeecCCeeEEEEecccCCCCCHHHHHHHHhhhcccceEEeeCCCC-cEEEEcCChHHHHHHHHhhhcCC-Cc
Q psy8931 4 LKPIDLQVATRSGNKKVTLVNNLDVYGIDLKEFCKLCQHGVAASTCINMVNNA-AQVQVQGNQIVFVHNLLTEKFNI-QK 81 (95)
Q Consensus 4 ~~~I~I~~~~R~g~K~vT~V~Gle~f~idl~~lak~lkk~~acs~sv~~~~g~-~eI~iQGd~~~~v~~~L~~~~gi-p~ 81 (95)
.++|+|++++|+|||.||+|+||+ |++|+++||++|+++||||+||.+.|+. .+|+|||||++.|.+||.+ .|+ |+
T Consensus 16 ~~~v~I~~~~R~g~K~VT~V~Gl~-~~~dlk~laK~lKkk~acggsV~~~~~~g~~I~iQGD~r~~v~~~L~~-~G~~~~ 93 (101)
T 2xzm_F 16 QTHIHIRVEQRRGRKCFTTVEGIP-PEFDYEKIMKYWKKWLSCNATIVEEDEGKKVIKLNGDHRNQIQQFLSE-EGIAAV 93 (101)
T ss_dssp SCCEEEEEEEEETTEEEEEEECCC-TTSCTHHHHHHHHHHHTSCCCEEECSTTCEEEEEESCCHHHHHHHHHH-HSSSCT
T ss_pred CCeEEEEEEeccCCccEEEEecCC-CchhHHHHHHHHHHHhcCCeEEecCCCCceEEEEeCcHHHHHHHHHHH-cCCCCH
Confidence 468999999999999999999999 9999999999999999999999997765 7999999999999999999 587 99
Q ss_pred CceEEc
Q psy8931 82 RFIRGL 87 (95)
Q Consensus 82 ~~I~~~ 87 (95)
++|++.
T Consensus 94 ~~I~vh 99 (101)
T 2xzm_F 94 DNITIH 99 (101)
T ss_dssp TTEEEC
T ss_pred HHEEEc
Confidence 999875
No 3
>2if1_A EIF1, SUI1; translation initiation factor; NMR {Homo sapiens} SCOP: d.64.1.1
Probab=99.94 E-value=5.8e-28 Score=163.57 Aligned_cols=84 Identities=20% Similarity=0.286 Sum_probs=78.0
Q ss_pred CCCccEEEEEeeecCCeeEEEEecccCCCCCHHHHHHHHhhhcccceEEeeCCCC-cEEEEcCChHHHHHHHHhhhcCC-
Q psy8931 2 GKLKPIDLQVATRSGNKKVTLVNNLDVYGIDLKEFCKLCQHGVAASTCINMVNNA-AQVQVQGNQIVFVHNLLTEKFNI- 79 (95)
Q Consensus 2 G~~~~I~I~~~~R~g~K~vT~V~Gle~f~idl~~lak~lkk~~acs~sv~~~~g~-~eI~iQGd~~~~v~~~L~~~~gi- 79 (95)
|+.++|+|++++|+|||.||+|+||+. ++|+++||++|+++||||+||.+.|+. .+|+|||||++.|.+||.+ .|+
T Consensus 39 g~~~~V~Ir~~~R~grK~VT~V~GL~~-~~dlk~laK~LKkk~acgGtVk~~~e~g~~I~IQGD~r~~I~~~L~~-~G~~ 116 (126)
T 2if1_A 39 GTEDYIHIRIQQRNGRKTLTTVQGIAD-DYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLVE-IGLA 116 (126)
T ss_dssp SCTTCEECCCCCSSSSCCBCEEBSCCT-TSCHHHHHTTHHHHTCCCEEEECCTTTSSEEEESBCCHHHHHHHHHH-HTSS
T ss_pred CCCCeEEEEEEeecCCccEEEEeCCCC-chhHHHHHHHHHHHhcCCeEEecCCCCccEEEEcCCHHHHHHHHHHH-cCCC
Confidence 677899999999999999999999998 999999999999999999999997765 7999999999999999999 577
Q ss_pred CcCceEEc
Q psy8931 80 QKRFIRGL 87 (95)
Q Consensus 80 p~~~I~~~ 87 (95)
|+++|++.
T Consensus 117 ~~~~I~vh 124 (126)
T 2if1_A 117 KDDQLKVH 124 (126)
T ss_dssp CTTTEECC
T ss_pred ChhhEEee
Confidence 79999874
No 4
>1d1r_A Hypothetical 11.4 KD protein YCIH in PYRF-OSMB intergenic region; alpha-beta plait, open-faced beta sandwich, ferredoxin-like fold; NMR {Escherichia coli} SCOP: d.64.1.1
Probab=99.92 E-value=3.4e-26 Score=153.00 Aligned_cols=79 Identities=19% Similarity=0.333 Sum_probs=73.6
Q ss_pred CccEEEEEeeecCC--eeEEEEecccCCCCCHHHHHHHHhhhcccceEEeeCCCCcEEEEcCChHHHHHHHHhhhcCCCc
Q psy8931 4 LKPIDLQVATRSGN--KKVTLVNNLDVYGIDLKEFCKLCQHGVAASTCINMVNNAAQVQVQGNQIVFVHNLLTEKFNIQK 81 (95)
Q Consensus 4 ~~~I~I~~~~R~g~--K~vT~V~Gle~f~idl~~lak~lkk~~acs~sv~~~~g~~eI~iQGd~~~~v~~~L~~~~gip~ 81 (95)
.++|+|+++ |+|| |.||+|+||+.|++|+++||++|+++||||+||.+ ++|+|||||++.|.+||.+ .|++.
T Consensus 30 ~~~V~I~~e-r~gR~GK~VT~V~Gl~~~~~dlk~laK~LKkk~acgGtVk~----~~IeiQGD~r~~i~~~L~~-~G~~v 103 (116)
T 1d1r_A 30 DGVVRIQRQ-TSGRKGKGVCLITGVDLDDAELTKLAAELKKKCGCGGAVKD----GVIEIQGDKRDLLKSLLEA-KGMKV 103 (116)
T ss_dssp CCEEEEEEC-CCSSSSCCCEEEECCCSCHHHHHHHHHHHTTSSSSCCBCCS----SCEEECSCCHHHHHHHHHH-HTCEE
T ss_pred CCeEEEEEE-eCCCCCCeEEEEeCCcCchhhHHHHHHHHHHHhcCCcEEcC----CEEEEeCcHHHHHHHHHHH-cCCCc
Confidence 467999988 7666 99999999999999999999999999999999998 8999999999999999998 89999
Q ss_pred CceEEcc
Q psy8931 82 RFIRGLE 88 (95)
Q Consensus 82 ~~I~~~~ 88 (95)
++|+.++
T Consensus 104 k~i~~~~ 110 (116)
T 1d1r_A 104 KLAGGLE 110 (116)
T ss_dssp CCCCCCC
T ss_pred ceecccc
Confidence 9998765
No 5
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=95.24 E-value=0.037 Score=37.80 Aligned_cols=61 Identities=18% Similarity=0.244 Sum_probs=45.5
Q ss_pred CccEEEEEeeecCCeeEEEEecccCC----CCCHHHHHHHHhhhcccceEEeeCCCCcEEEEcCChHHHHHHHH
Q psy8931 4 LKPIDLQVATRSGNKKVTLVNNLDVY----GIDLKEFCKLCQHGVAASTCINMVNNAAQVQVQGNQIVFVHNLL 73 (95)
Q Consensus 4 ~~~I~I~~~~R~g~K~vT~V~Gle~f----~idl~~lak~lkk~~acs~sv~~~~g~~eI~iQGd~~~~v~~~L 73 (95)
.|++++.++ |+| |++.||... .=+++-+.+.|...++++|++.. +...|+|.+...-.+-+
T Consensus 32 mP~~~v~~e---GkK--Tvi~Nf~dIa~~L~R~p~hv~ky~~~ELGt~g~id~----~rlii~G~~~~~~i~~~ 96 (148)
T 2d74_B 32 VPGALVTIE---GNK--TIIENFKDIADALNRDPQHLLKFLLREIATAGTLEG----RRVVLQGRFTPYLIANK 96 (148)
T ss_dssp CCCCCEEEE---TTE--EEESCHHHHHHHHTCCSHHHHHHHHHHSCCCEEEET----TEEEESSCCCHHHHHHH
T ss_pred cCCCeEEEe---cCe--EEEEcHHHHHHHHCCCHHHHHHHHHHHhCCceeecC----CEEEEEeeeCHHHHHHH
Confidence 345555444 544 999998654 45788999999999999999994 79999999765544433
No 6
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=94.69 E-value=0.014 Score=39.36 Aligned_cols=51 Identities=20% Similarity=0.311 Sum_probs=41.3
Q ss_pred cCCeeEEEEecccCC----CCCHHHHHHHHhhhcccceEEeeCCCCcEEEEcCChHHHHHH
Q psy8931 15 SGNKKVTLVNNLDVY----GIDLKEFCKLCQHGVAASTCINMVNNAAQVQVQGNQIVFVHN 71 (95)
Q Consensus 15 ~g~K~vT~V~Gle~f----~idl~~lak~lkk~~acs~sv~~~~g~~eI~iQGd~~~~v~~ 71 (95)
-|+| |++.||... .=+++-+.+.|...+++++++.. +...|+|.|...-.+
T Consensus 38 eG~k--Tvi~Nf~dIa~~L~R~p~hv~ky~~~ELGt~g~id~----~rlii~G~~~~~~i~ 92 (138)
T 1nee_A 38 QGNR--TFIQNFREVADALNRDPQHLLKFLLRELGTAGNLEG----GRAILQGKFTHFLIN 92 (138)
T ss_dssp ETTE--EEESCHHHHHHHHCSSHHHHHHHHHHHCCSCCCCBT----TTEEEESSCSSSHHH
T ss_pred ECCc--EEEEcHHHHHHHHCCCHHHHHHHHHHHhCCceeecC----CEEEEEeeeCHHHHH
Confidence 3666 999998654 45789999999999999999984 789999997654444
No 7
>1k8b_A EIF-2-beta, probable translation initiation factor 2 beta subunit; N-terminal domain, AIF2 subunit beta; NMR {Methanocaldococcus jannaschii} SCOP: d.241.1.1
Probab=93.87 E-value=0.054 Score=30.79 Aligned_cols=46 Identities=17% Similarity=0.235 Sum_probs=37.5
Q ss_pred eecCCeeEEEEecccCC----CCCHHHHHHHHhhhcccceEEeeCCCCcEEEEcCC
Q psy8931 13 TRSGNKKVTLVNNLDVY----GIDLKEFCKLCQHGVAASTCINMVNNAAQVQVQGN 64 (95)
Q Consensus 13 ~R~g~K~vT~V~Gle~f----~idl~~lak~lkk~~acs~sv~~~~g~~eI~iQGd 64 (95)
.|-|+| |++.|+.+. .=+++-+.+.|.+.+++++++.. +...|+|.
T Consensus 3 ~~eG~k--Tvi~Nf~~Ia~~L~R~p~hv~ky~~~ELGt~g~id~----~rlii~G~ 52 (52)
T 1k8b_A 3 LIEGNR--TIIRNFRELAKAVNRDEEFFAKYLLKETGSAGNLEG----GRLILQRR 52 (52)
T ss_dssp EEETTE--EEECCHHHHHHHHHTCHHHHHHHHHHHHSSEEEEET----TEEEEECC
T ss_pred EEEcCe--EEEECHHHHHHHHCCCHHHHHHHHHHHhCCCeeecC----CEEEEeCC
Confidence 355877 999998754 34789999999999999999984 68888873
No 8
>2fhm_A Probable acylphosphatase; hydrolase; NMR {Bacillus subtilis} PDB: 2hlt_A 2hlu_A 3br8_A
Probab=93.75 E-value=0.47 Score=29.14 Aligned_cols=64 Identities=8% Similarity=0.179 Sum_probs=47.8
Q ss_pred EEecccCCCCCHHHHHHHHhhhcccceEEeeCCCC-cEEEEcCChHHHHHHHHhh-hcCCCcCceEEc
Q psy8931 22 LVNNLDVYGIDLKEFCKLCQHGVAASTCINMVNNA-AQVQVQGNQIVFVHNLLTE-KFNIQKRFIRGL 87 (95)
Q Consensus 22 ~V~Gle~f~idl~~lak~lkk~~acs~sv~~~~g~-~eI~iQGd~~~~v~~~L~~-~~gip~~~I~~~ 87 (95)
.|+|.-+ |+-...++..+...++-.|.|...++. .+|.+||+.. .|.+|+.. +.|-|...|+-+
T Consensus 7 ~v~G~VQ-GVGFR~~v~~~A~~lgl~G~V~N~~dG~Vei~~eG~~~-~i~~f~~~l~~~~p~a~V~~v 72 (91)
T 2fhm_A 7 IVDGRVQ-GVGFRYFVQMEADKRKLAGWVKNRDDGRVEILAEGPEN-ALQSFVEAVKNGSPFSKVTDI 72 (91)
T ss_dssp EEEEECC-SSCHHHHHHHHHHHTTCEEEEEECTTSCEEEEEEECHH-HHHHHHHHHHTTCSSSEEEEE
T ss_pred EEEEeEC-CcCHHHHHHHHHHHcCCeEEEEECCCCcEEEEEEeCHH-HHHHHHHHHHhCCCccEEEEE
Confidence 4778765 888999999999999999999987765 9999999853 24444433 236666666544
No 9
>1gxu_A Hydrogenase maturation protein HYPF; phosphatase, acylphosphatases, hydrogenase maturations, fibril formation, zinc-finger, complete proteome; 1.27A {Escherichia coli} SCOP: d.58.10.1 PDB: 1gxt_A
Probab=93.33 E-value=0.66 Score=28.63 Aligned_cols=62 Identities=8% Similarity=0.033 Sum_probs=48.1
Q ss_pred EEecccCCCCCHHHHHHHHhhhcccceEEeeCCCCcEEEEcCChHHHHHHHHhhhcCCCcCceEE
Q psy8931 22 LVNNLDVYGIDLKEFCKLCQHGVAASTCINMVNNAAQVQVQGNQIVFVHNLLTEKFNIQKRFIRG 86 (95)
Q Consensus 22 ~V~Gle~f~idl~~lak~lkk~~acs~sv~~~~g~~eI~iQGd~~~~v~~~L~~~~gip~~~I~~ 86 (95)
.|+|.-+ |+-..-++..+...++-.|.|...++..+|.+||+. +.+.++|.+ -+=|...|+-
T Consensus 12 ~V~G~VQ-GVGFR~~v~~~A~~lgL~G~VrN~~dGVei~~eG~~-~~f~~~l~~-~~P~~A~V~~ 73 (91)
T 1gxu_A 12 RIRGKVQ-GVGFRPFVWQLAQQLNLHGDVCNDGDGVEVRLREDP-EVFLVQLYQ-HCPPLARIDS 73 (91)
T ss_dssp EEEEECS-SSSHHHHHHHHHHHHTCCEEEEECSSSEEEEESSCC-HHHHHHHHH-TCCTTCEEEE
T ss_pred EEEEeeC-CcCHHHHHHHHHHHcCCeEEEEECCCcEEEEEEECH-HHHHHHHhh-CCCCCEEEEE
Confidence 5788765 889999999999999999999987655899999999 777777765 2333444443
No 10
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.47 E-value=0.092 Score=36.15 Aligned_cols=67 Identities=12% Similarity=0.029 Sum_probs=48.8
Q ss_pred CccEEEEEeeecCCeeEEEEecccCC----CCCHHHHHHHHhhhcccceEEeeCCCCcEEEEcCChHHHHHHHH
Q psy8931 4 LKPIDLQVATRSGNKKVTLVNNLDVY----GIDLKEFCKLCQHGVAASTCINMVNNAAQVQVQGNQIVFVHNLL 73 (95)
Q Consensus 4 ~~~I~I~~~~R~g~K~vT~V~Gle~f----~idl~~lak~lkk~~acs~sv~~~~g~~eI~iQGd~~~~v~~~L 73 (95)
.|++++.++.+.+ =.=|++.||.+. .=+++-+.+.|...+++++++.+ +.+...|+|.|...-.+-+
T Consensus 25 mP~~~v~~eG~gn-G~KTvi~Nf~dIak~L~R~p~hv~ky~~~ELGt~g~id~--~~~rlii~G~~~~~~i~~~ 95 (157)
T 2e9h_A 25 MPRLIAKVEGKGN-GIKTVIVNMVDVAKALNRPPTYPTKYFGCELGAQTQFDV--KNDRYIVNGSHEANKLQDM 95 (157)
T ss_dssp EECCCEEECSSSS-SCEEEETTHHHHHHHTTSCTHHHHHHHHHHHTCCEEEET--TTTEEEEEBCCCHHHHHHH
T ss_pred cCCCeEEEeccCC-ccEEEEEcHHHHHHHHCCCHHHHHHHHHHHhCCceeecC--CCCEEEEEeeeCHHHHHHH
Confidence 3566677777633 355888888643 45789999999999999999974 2279999999765544433
No 11
>1urr_A CG18505 protein; acylphosphatase, enzyme; 1.5A {Drosophila melanogaster} SCOP: d.58.10.1
Probab=91.15 E-value=1.4 Score=27.56 Aligned_cols=64 Identities=6% Similarity=0.018 Sum_probs=46.8
Q ss_pred EEecccCCCCCHHHHHHHHhhhcccceEEeeCCCC-cEEEEcCChH--HHHHHHHhhhcCCCcCceEEc
Q psy8931 22 LVNNLDVYGIDLKEFCKLCQHGVAASTCINMVNNA-AQVQVQGNQI--VFVHNLLTEKFNIQKRFIRGL 87 (95)
Q Consensus 22 ~V~Gle~f~idl~~lak~lkk~~acs~sv~~~~g~-~eI~iQGd~~--~~v~~~L~~~~gip~~~I~~~ 87 (95)
.|+|.-+ |+-...++..+...++-.|.|...++. .+|.+||+.. +.+.++|.. .|=|...|+-+
T Consensus 16 ~V~G~VQ-GVGFR~~v~~~A~~lgL~G~V~N~~dG~Vei~~eG~~~~l~~f~~~l~~-~gP~~a~V~~v 82 (102)
T 1urr_A 16 EIFGRVQ-GVFFRKHTSHEAKRLGVRGWCMNTRDGTVKGQLEAPMMNLMEMKHWLEN-NRIPNAKVSKA 82 (102)
T ss_dssp EEEEECS-SSSHHHHHHHHHHHHTCEEEEEECTTSCEEEEEEECHHHHHHHHHHHHH-CCSTTCEEEEE
T ss_pred EEEEeEC-CcChhHHHHHHHHHhCCcEEEEECCCCCEEEEEEcCHHHHHHHHHHHHh-cCCCccEEEEE
Confidence 4788765 889999999999999999999987765 8999999853 344444442 34444445443
No 12
>2lxf_A Uncharacterized protein; beaver fever, giardiasis, seattle structural genomics center infectious disease, ssgcid, structural genomics; NMR {Giardia lamblia}
Probab=91.05 E-value=0.86 Score=29.83 Aligned_cols=62 Identities=13% Similarity=0.154 Sum_probs=46.0
Q ss_pred EecccCCCCCHHHHHHHHhhhcccceEEeeCCCC-cEEEEcCCh--HHHHHHHHhhhcCCCcCceEEc
Q psy8931 23 VNNLDVYGIDLKEFCKLCQHGVAASTCINMVNNA-AQVQVQGNQ--IVFVHNLLTEKFNIQKRFIRGL 87 (95)
Q Consensus 23 V~Gle~f~idl~~lak~lkk~~acs~sv~~~~g~-~eI~iQGd~--~~~v~~~L~~~~gip~~~I~~~ 87 (95)
|+|.-+ |+-...++..+...++-.|.|...++. .+|.+||+. .+.+.++|. .|=|...|+-+
T Consensus 40 V~G~VQ-GVGFR~~v~~~A~~lgL~G~VrN~~dG~Vei~~eG~~~~v~~f~~~l~--~gPp~A~V~~v 104 (121)
T 2lxf_A 40 VTGKVQ-GVFFRKYTKKEADALSLVGYVTNNEDGSVSGVVQGPKEQVDAFVKYLH--KGSPKSVVKKV 104 (121)
T ss_dssp EEECTT-CCCCHHHHHHHHHHHTCEEEEEECTTSCEEEEEEEEHHHHHHHHHHHH--HCCTTCCEEEE
T ss_pred EEEeeC-CcCchHHHHHHHHHcCCEEEEEECCCCCEEEEEEECHHHHHHHHHHHH--hCCCCCEEEEE
Confidence 888775 888899999999999999999987754 899999973 334444443 36555555543
No 13
>2vh7_A Acylphosphatase-1; hydrolase, acetylation; 1.45A {Homo sapiens} PDB: 2w4c_A 2w4p_A 2k7k_A 2k7j_A 2acy_A
Probab=90.42 E-value=1.8 Score=26.89 Aligned_cols=63 Identities=13% Similarity=0.077 Sum_probs=46.0
Q ss_pred EEecccCCCCCHHHHHHHHhhhcccceEEeeCCCC-cEEEEcCChH--HHHHHHHhhhcCCCcCceEE
Q psy8931 22 LVNNLDVYGIDLKEFCKLCQHGVAASTCINMVNNA-AQVQVQGNQI--VFVHNLLTEKFNIQKRFIRG 86 (95)
Q Consensus 22 ~V~Gle~f~idl~~lak~lkk~~acs~sv~~~~g~-~eI~iQGd~~--~~v~~~L~~~~gip~~~I~~ 86 (95)
.|+|.-+ |+-..-++..+...++-.|.|...++. .+|.+||+.. +.+.++|.+ .|=|...|+-
T Consensus 13 ~V~G~VQ-GVGFR~~v~~~A~~lgL~G~V~N~~dG~Vei~~eG~~~~v~~f~~~l~~-~~p~~a~V~~ 78 (99)
T 2vh7_A 13 EIFGKVQ-GVFFRKHTQAEGKKLGLVGWVQNTDRGTVQGQLQGPISKVRHMQEWLET-RGSPKSHIDK 78 (99)
T ss_dssp EEEEECS-SSCHHHHHHHHHHHTTCEEEEEECTTSCEEEEEEEEHHHHHHHHHHHHH-TCSTTCEEEE
T ss_pred EEEEeeC-CcChHHHHHHHHHHcCCcEEEEECCCCCEEEEEEcCHHHHHHHHHHHHh-cCCCceEEEE
Confidence 4788765 889999999999999999999987765 8999999853 344444433 2434444544
No 14
>3trg_A Acylphosphatase; fatty acid and phospholipid metabolism, hydrolase; 1.60A {Coxiella burnetii}
Probab=90.22 E-value=1.9 Score=26.84 Aligned_cols=63 Identities=8% Similarity=0.019 Sum_probs=46.2
Q ss_pred EEecccCCCCCHHHHHHHHhhhcccceEEeeCCCC-cEEEEcCChHHHHHHHHhh-hcCCCcCceEE
Q psy8931 22 LVNNLDVYGIDLKEFCKLCQHGVAASTCINMVNNA-AQVQVQGNQIVFVHNLLTE-KFNIQKRFIRG 86 (95)
Q Consensus 22 ~V~Gle~f~idl~~lak~lkk~~acs~sv~~~~g~-~eI~iQGd~~~~v~~~L~~-~~gip~~~I~~ 86 (95)
.|+|.-. |+-..-++..+...++-+|.|...++. .+|.+||+- +.|.+|+.. +.|=|...|+-
T Consensus 17 ~V~G~VQ-GVGFR~~v~~~A~~lgL~G~VrN~~dG~Vei~~eG~~-~~l~~f~~~l~~gPp~A~V~~ 81 (98)
T 3trg_A 17 TVSGKVQ-GVFFRESVRKKAEELQLTGWVKNLSHGDVELVACGER-DSIMILTEWLWEGPPQAAVSN 81 (98)
T ss_dssp EEEEECS-SSCHHHHHHHHHHHTTCEEEEEECTTSCEEEEEEEEH-HHHHHHHHHTTTCSTTCEEEE
T ss_pred EEEEeEC-CCCccHHHHHHHHHcCCeEEEEECCCCEEEEEEEECH-HHHHHHHHHHHhCCCCcEEEE
Confidence 5778765 889999999999999999999987765 999999983 445555443 12434444443
No 15
>1ulr_A Putative acylphosphatase; hydrolase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: d.58.10.1
Probab=90.17 E-value=2 Score=26.05 Aligned_cols=62 Identities=13% Similarity=0.162 Sum_probs=46.1
Q ss_pred EEecccCCCCCHHHHHHHHhhhcccceEEeeCCCC-cEEEEcCChH--HHHHHHHhhhcCCCcCceEE
Q psy8931 22 LVNNLDVYGIDLKEFCKLCQHGVAASTCINMVNNA-AQVQVQGNQI--VFVHNLLTEKFNIQKRFIRG 86 (95)
Q Consensus 22 ~V~Gle~f~idl~~lak~lkk~~acs~sv~~~~g~-~eI~iQGd~~--~~v~~~L~~~~gip~~~I~~ 86 (95)
.|+|.-+ |+-...++..+...++-.|.|...++. .+|.+||+.. +...++|.+ |=|...|+-
T Consensus 7 ~v~G~VQ-GVGFR~~v~~~A~~lgl~G~V~N~~dG~Vei~~eG~~~~i~~f~~~l~~--gP~~a~V~~ 71 (88)
T 1ulr_A 7 LVKGRVQ-GVGYRAFAQKKALELGLSGYAENLPDGRVEVVAEGPKEALELFLHHLKQ--GPRLARVEA 71 (88)
T ss_dssp EEEEECS-SSSHHHHHHHHHHHTTCEEEEEECTTSCEEEEEESCHHHHHHHHHHHHH--CSTTCEEEE
T ss_pred EEEEeEC-CcCHHHHHHHHHHHcCCeEEEEECCCCcEEEEEEeCHHHHHHHHHHHHh--CCCCcEEEE
Confidence 4778665 888999999999999999999987765 9999999863 444444543 444444543
No 16
>2bjd_A Acylphosphatase; hyperthermophIle, hydrolase; 1.27A {Sulfolobus solfataricus} PDB: 2bje_A 1y9o_A
Probab=89.99 E-value=1.9 Score=27.04 Aligned_cols=62 Identities=15% Similarity=0.221 Sum_probs=45.6
Q ss_pred EEecccCCCCCHHHHHHHHhhhcccceEEeeCCCC-cEEEEcCChHHHHHHHHhh-hcCCCcCceE
Q psy8931 22 LVNNLDVYGIDLKEFCKLCQHGVAASTCINMVNNA-AQVQVQGNQIVFVHNLLTE-KFNIQKRFIR 85 (95)
Q Consensus 22 ~V~Gle~f~idl~~lak~lkk~~acs~sv~~~~g~-~eI~iQGd~~~~v~~~L~~-~~gip~~~I~ 85 (95)
.|+|.-+ |+-...++..+...++-.|.|...++. .+|.+||+... |.+|+.. +.|=|...|+
T Consensus 19 ~V~G~VQ-GVGFR~~v~~~A~~lgL~G~V~N~~dG~Vei~~eG~~~~-i~~f~~~l~~gP~~A~V~ 82 (101)
T 2bjd_A 19 RVYGLVQ-GVGFRKFVQIHAIRLGIKGYAKNLPDGSVEVVAEGYEEA-LSKLLERIKQGPPAAEVE 82 (101)
T ss_dssp EEEEECS-SSSHHHHHHHHHHHTTCEEEEEECTTSCEEEEEEEEHHH-HHHHHHHHTTCSTTCEEE
T ss_pred EEEEeEC-CcCHHHHHHHHHHHcCCeEEEEECCCCcEEEEEEeCHHH-HHHHHHHHHhCCCccEEE
Confidence 5888765 899999999999999999999987765 99999998532 4444433 2362234443
No 17
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=89.73 E-value=0.079 Score=36.93 Aligned_cols=68 Identities=12% Similarity=0.017 Sum_probs=47.5
Q ss_pred CccEEEEEeeecCCeeEEEEecccCC----CCCHHHHHHHHhhhcccceEEeeCCCCcEEEEcCChHHHHHHHHh
Q psy8931 4 LKPIDLQVATRSGNKKVTLVNNLDVY----GIDLKEFCKLCQHGVAASTCINMVNNAAQVQVQGNQIVFVHNLLT 74 (95)
Q Consensus 4 ~~~I~I~~~~R~g~K~vT~V~Gle~f----~idl~~lak~lkk~~acs~sv~~~~g~~eI~iQGd~~~~v~~~L~ 74 (95)
.|++++.++.+.++ .-|++.||... .=+++-+.+.|...+++++++.+. .+...|+|.|.....+-++
T Consensus 18 mP~~~v~~EG~gnG-~KTvi~Nf~dIak~L~R~p~hv~kyf~~ELGt~g~id~~--~~rliinG~~~~~~i~~~L 89 (170)
T 2g2k_A 18 MPRLIAKVEGKGNG-IKTVIVNMVDVAKALNRPPTYPTKYFGCELGAQTQFDVK--NDRYIVNGSHEANKLQDML 89 (170)
T ss_dssp CCCCCCEEESCTTT-CEEECSSHHHHHHHHSSCCTTTHHHHHHHTTCCCEECTT--TCCEEEEBCCCHHHHHHHH
T ss_pred CCCCeEEEeccCCc-cEEEEEcHHHHHHHhCCCHHHHHHHHHHHhCCceeecCC--CCEEEEEeeeCHHHHHHHH
Confidence 56777788877332 45777777543 335677788889999999999731 2689999997665544333
No 18
>1w2i_A Acylphosphatase; hydrolase, thermophilic, stability, amyloid; 1.5A {Pyrococcus horikoshii} SCOP: d.58.10.1 PDB: 1v3z_A 2w4d_A
Probab=89.12 E-value=2.3 Score=26.01 Aligned_cols=63 Identities=6% Similarity=0.043 Sum_probs=45.8
Q ss_pred EEecccCCCCCHHHHHHHHhhhcccceEEeeCCCC-cEEEEcCChHHHHHHHHhh-hcCCCcCceEE
Q psy8931 22 LVNNLDVYGIDLKEFCKLCQHGVAASTCINMVNNA-AQVQVQGNQIVFVHNLLTE-KFNIQKRFIRG 86 (95)
Q Consensus 22 ~V~Gle~f~idl~~lak~lkk~~acs~sv~~~~g~-~eI~iQGd~~~~v~~~L~~-~~gip~~~I~~ 86 (95)
.|+|.-+ |+-...++..+...++-.|.|...++. .+|.+||+... |.+|+.. +.|=|...|+-
T Consensus 9 ~V~G~VQ-GVGFR~~v~~~A~~lgL~G~V~N~~dG~Vei~~~G~~~~-v~~f~~~l~~gP~~a~V~~ 73 (91)
T 1w2i_A 9 KIYGRVQ-GVGFRWSMQREARKLGVNGWVRNLPDGSVEAVLEGDEER-VEALIGWAHQGPPLARVTR 73 (91)
T ss_dssp EEEEECS-SSSHHHHHHHHHHHHTCEEEEEECTTSCEEEEEEEEHHH-HHHHHHHTTTCSTTCEEEE
T ss_pred EEEEEEC-CcCHHHHHHHHHHHcCCeEEEEECCCCCEEEEEEeCHHH-HHHHHHHHHhCCCCcEEEE
Confidence 4778765 888999999999999999999987765 99999998643 4444443 12434444543
No 19
>3hyi_A Protein DUF199/WHIA; laglidadg, homing endonuclease, helix-turn-helix, HTH, trans regulator; 2.34A {Thermotoga maritima} PDB: 3hyj_A
Probab=87.31 E-value=3.1 Score=30.99 Aligned_cols=54 Identities=13% Similarity=0.163 Sum_probs=43.0
Q ss_pred CHHHHHHHHhhhcccceEEeeCCCC--cEEEEcCC-hHHHHHHHH-hhhcCCCcCceEE
Q psy8931 32 DLKEFCKLCQHGVAASTCINMVNNA--AQVQVQGN-QIVFVHNLL-TEKFNIQKRFIRG 86 (95)
Q Consensus 32 dl~~lak~lkk~~acs~sv~~~~g~--~eI~iQGd-~~~~v~~~L-~~~~gip~~~I~~ 86 (95)
+.......|+-.|=++|||.++... .||...+. +...+.++| .. +|++.+.++.
T Consensus 107 ~~~~~~A~lRGaFLa~GSv~dP~~~YHLEi~~~~~e~a~~l~~ll~~~-~~l~ak~~~R 164 (295)
T 3hyi_A 107 DVALFVSFLRGLFLSGGSMTNPRYHYHLEINLFEEETLALTRKSLKDF-FNINAGIIEL 164 (295)
T ss_dssp SHHHHHHHHHHHHHHHEEECCTTTCCCEEEEESCHHHHHHHHHHHHHH-HCCCCEEEEC
T ss_pred ChHHHHHHHHHHHhcCeecCCCCCceeEEEeeCcHHHHHHHHHHHHHh-cCCCceEEEE
Confidence 4566778999999999999986543 88888876 777888888 55 9999887664
No 20
>2gv1_A Probable acylphosphatase; globular alpha-helix/beta-sheet protein, hydrolase; NMR {Escherichia coli}
Probab=85.12 E-value=2.3 Score=25.98 Aligned_cols=51 Identities=10% Similarity=0.087 Sum_probs=37.2
Q ss_pred EEecccCCCCCHHHHHHHHhhhcccceEEeeCCCC-cEEEEcCChH--HHHHHHH
Q psy8931 22 LVNNLDVYGIDLKEFCKLCQHGVAASTCINMVNNA-AQVQVQGNQI--VFVHNLL 73 (95)
Q Consensus 22 ~V~Gle~f~idl~~lak~lkk~~acs~sv~~~~g~-~eI~iQGd~~--~~v~~~L 73 (95)
.|+|.-. |+-...++..+...++-+|.|...++. .+|.+||+.. +.+.++|
T Consensus 9 ~V~G~VQ-GVGFR~~v~~~A~~lgL~G~V~N~~dG~Vei~~eG~~~~i~~f~~~l 62 (92)
T 2gv1_A 9 WVYGRVQ-GVGFRYTTQYEAKRLGLTGYAKNLDDGSVEVVACGEEGQVEKLMQWL 62 (92)
T ss_dssp EEEEECT-TTTCCSHHHHHHHHHTCCCEEEECSSSCEEEEECSCHHHHHHHHHHH
T ss_pred EEEEeeC-CcCHHHHHHHHHHHcCCeEEEEECCCCcEEEEEEeCHHHHHHHHHHh
Confidence 4667544 666666777788888999999987765 8999999863 4445555
No 21
>1aps_A Acylphosphatase; hydrolase(acting on acid anhydrides); NMR {Equus caballus} SCOP: d.58.10.1
Probab=81.65 E-value=1.5 Score=27.23 Aligned_cols=52 Identities=13% Similarity=0.095 Sum_probs=39.8
Q ss_pred EEecccCCCCCHHHHHHHHhhhcccceEEeeCCCC-cEEEEcCChHHHHHHHHhh
Q psy8931 22 LVNNLDVYGIDLKEFCKLCQHGVAASTCINMVNNA-AQVQVQGNQIVFVHNLLTE 75 (95)
Q Consensus 22 ~V~Gle~f~idl~~lak~lkk~~acs~sv~~~~g~-~eI~iQGd~~~~v~~~L~~ 75 (95)
.|+|.-+ |+-...++..+...++-.|.|...++. .+|.+||+.. .|.+|+..
T Consensus 12 ~V~G~VQ-GVGFR~~v~~~A~~lgL~G~V~N~~dG~Vei~~eG~~~-~l~~f~~~ 64 (98)
T 1aps_A 12 EVFGRVQ-GVCFRMYAEDEARKIGVVGWVKNTSKGTVTGQVQGPEE-KVNSMKSW 64 (98)
T ss_dssp EEECTTS-CCCCTTHHHHHHHHHTCEEEEECCTTCEEEEEEEEEHH-HHHHHHHS
T ss_pred EEEEEEC-CcCHHHHHHHHHHHcCCeEEEEECCCCcEEEEEEeCHH-HHHHHHHH
Confidence 4777654 777777888888889999999987765 8999999854 35555544
No 22
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=78.54 E-value=0.027 Score=38.08 Aligned_cols=54 Identities=24% Similarity=0.246 Sum_probs=41.7
Q ss_pred eecCCeeEEEEecccCCC----CCHHHHHHHHhhhcccceEEeeCCCCcEEEEcCChHHHHHH
Q psy8931 13 TRSGNKKVTLVNNLDVYG----IDLKEFCKLCQHGVAASTCINMVNNAAQVQVQGNQIVFVHN 71 (95)
Q Consensus 13 ~R~g~K~vT~V~Gle~f~----idl~~lak~lkk~~acs~sv~~~~g~~eI~iQGd~~~~v~~ 71 (95)
.|-|+| |++.||.... =+++-+.+.|...+++++++.+ .+...|+|.|...-.+
T Consensus 36 ~~eG~k--Tvi~Nf~dIa~~L~R~p~hv~ky~~~ELGt~g~id~---~~rlii~G~~~~~~i~ 93 (139)
T 3cw2_K 36 LNIGNT--TIIRNFAEYCDRIRREDKICMKYLLKELAAPGNVDD---KGELVIQGKFSSQVIN 93 (139)
T ss_dssp CCCSSS--CCCSCSSSTTTTTSSCCTTTHHHHSCCSSCCCCCSS---SCCCTTTCSCCSCCSC
T ss_pred EEECCe--EEEEcHHHHHHHHCCCHHHHHHHHHHHhCCceEECC---CCeEEEEeeeCHHHHH
Confidence 345766 9999997663 3688899999999999999984 1678889987654443
No 23
>2y3m_A Emhofq, protein transport protein HOFQ; secretin, DNA uptake, competence; 2.30A {Aggregatibacter actinomycetemcomitans}
Probab=74.32 E-value=7.3 Score=25.73 Aligned_cols=58 Identities=10% Similarity=0.119 Sum_probs=41.4
Q ss_pred cCCCCCHHHHHHHHh----hhcccceEEeeCCCCcEEEEcCC--hHHHHHHHHhhhcCCCcCceE
Q psy8931 27 DVYGIDLKEFCKLCQ----HGVAASTCINMVNNAAQVQVQGN--QIVFVHNLLTEKFNIQKRFIR 85 (95)
Q Consensus 27 e~f~idl~~lak~lk----k~~acs~sv~~~~g~~eI~iQGd--~~~~v~~~L~~~~gip~~~I~ 85 (95)
...-.+.++++..|+ ..++-.+++.-.+....+.|.|. ....+.++|.. ...|...+.
T Consensus 111 ~L~y~~a~~~~~~l~~~~~~l~~~~g~v~~d~~tN~liv~~~~~~i~~i~~li~~-lD~p~~QV~ 174 (175)
T 2y3m_A 111 KLHFAKASEVMKSLTGGSGSLLSPNGSITFDDRSNLLLIQDEPRSVRNIKKLIKE-LDKPIEQLE 174 (175)
T ss_dssp ECSSSCHHHHHHHHHCSSSCSSCTTCEEEEETTTTEEEEEECHHHHHHHHHHHHH-HCC------
T ss_pred EEeCCCHHHHHHHHhhCcccccCCCceEEEECCCCEEEEEcCHHHHHHHHHHHHH-hCCChhhCc
Confidence 333568999999999 78877788887777789999998 44677777777 888887764
No 24
>2hl7_A Cytochrome C-type biogenesis protein CCMH; three-helices bundle, oxidoreductase; HET: PG4; 1.70A {Pseudomonas aeruginosa}
Probab=65.24 E-value=0.66 Score=28.67 Aligned_cols=44 Identities=9% Similarity=0.031 Sum_probs=31.9
Q ss_pred HHHHHHhhhcccceEEeeCCCC---------cEEEEcCChHHHHHHHHhhhcC
Q psy8931 35 EFCKLCQHGVAASTCINMVNNA---------AQVQVQGNQIVFVHNLLTEKFN 78 (95)
Q Consensus 35 ~lak~lkk~~acs~sv~~~~g~---------~eI~iQGd~~~~v~~~L~~~~g 78 (95)
+|+++|+=-.+++=|+.++... -+-+-+|+-.++|.+||+++||
T Consensus 22 ~l~~~LRCp~Cqnqsi~dSna~iA~dlR~~V~~~l~~G~sd~eI~~~~v~RYG 74 (84)
T 2hl7_A 22 NLTQELRCPKCQNQDIADSNAPIAADLRKQIYGQLQQGKSDGEIVDYMVARYG 74 (84)
T ss_dssp HHHHHEECTTSSSCBTTTCCSHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHT
T ss_pred HHHHcCcCCCCCCCchhhcCcHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhcC
Confidence 4555555555555577665443 4667899999999999999998
No 25
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=65.00 E-value=20 Score=29.84 Aligned_cols=63 Identities=11% Similarity=0.089 Sum_probs=46.8
Q ss_pred EEecccCCCCCHHHHHHHHhhhcccceEEeeCCCCcEEEEcCCh--HHHHHHHHhhhcCCCcCceEE
Q psy8931 22 LVNNLDVYGIDLKEFCKLCQHGVAASTCINMVNNAAQVQVQGNQ--IVFVHNLLTEKFNIQKRFIRG 86 (95)
Q Consensus 22 ~V~Gle~f~idl~~lak~lkk~~acs~sv~~~~g~~eI~iQGd~--~~~v~~~L~~~~gip~~~I~~ 86 (95)
.|+|.-+ |+-..-+...+...++-.|.|...++..+|.+||+. .+...++|.+ .+=|...|+-
T Consensus 15 ~V~G~VQ-GVGFR~~v~~~A~~lgL~G~V~N~~dGVei~~eG~~~~l~~f~~~L~~-~~Pp~a~V~~ 79 (761)
T 3vth_A 15 NIFGIVQ-GVGFRPFVFNIAQKYNLKGIVYNNSSGLYIEVEGEEKDIEAFIREIKE-NPPSLSVIDE 79 (761)
T ss_dssp EEEEECS-SSSHHHHHHHHHHHTTCEEEEEEETTEEEEEEEECHHHHHHHHHHHHH-SCCTTCEEEE
T ss_pred EEEEEeC-CcCcHHHHHHHHHHcCCeEEEEECCCeEEEEEEECHHHHHHHHHHHhc-CCCCCeEEEe
Confidence 5888775 999999999999999999999987665999999984 3344444443 3444455544
No 26
>2gx5_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, GAF domain; HET: PG4 P6G PCG PGE; 1.74A {Bacillus subtilis} PDB: 2b18_A 2hgv_A*
Probab=62.37 E-value=8.6 Score=26.41 Aligned_cols=56 Identities=7% Similarity=0.095 Sum_probs=40.5
Q ss_pred CCCCHHHHHHHHhhhcccceEEeeCCCC--cEEEEcCChHHHHHHHHhhhcCCCcCceE
Q psy8931 29 YGIDLKEFCKLCQHGVAASTCINMVNNA--AQVQVQGNQIVFVHNLLTEKFNIQKRFIR 85 (95)
Q Consensus 29 f~idl~~lak~lkk~~acs~sv~~~~g~--~eI~iQGd~~~~v~~~L~~~~gip~~~I~ 85 (95)
..++++++|+.|...+.|++-|....|. +.=..++-..+.+.+++.+ -.+|+.|.+
T Consensus 30 ~~v~f~eia~vLs~vL~~NvyIvs~~GkiLG~~~~~~~~~~~~~~~~~~-~~fp~~y~~ 87 (170)
T 2gx5_A 30 KPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLED-RQFPEEYTK 87 (170)
T ss_dssp SCCCHHHHHHHHHHHHTSEEEEEETTSBEEEEECSSCCCCHHHHHHHHH-TBCCHHHHH
T ss_pred CCCCHHHHHHHHHHHhCCCEEEEcCCCCEEEEecccccchHHHHHHHhc-CcCCHHHHH
Confidence 4789999999999999999999987775 3334444335667776655 557666544
No 27
>2kw0_A CCMH protein; oxidoreductase, cytochrome C maturation; NMR {Escherichia coli}
Probab=61.74 E-value=0.63 Score=29.20 Aligned_cols=44 Identities=7% Similarity=0.132 Sum_probs=30.4
Q ss_pred HHHHHHhhhcccceEEeeCCCC---------cEEEEcCChHHHHHHHHhhhcC
Q psy8931 35 EFCKLCQHGVAASTCINMVNNA---------AQVQVQGNQIVFVHNLLTEKFN 78 (95)
Q Consensus 35 ~lak~lkk~~acs~sv~~~~g~---------~eI~iQGd~~~~v~~~L~~~~g 78 (95)
+|+++|+=-.+++-|+.++... -+-+-+|+-.++|.+||++.||
T Consensus 19 ~L~~~LRCpvCqnqsI~dSnA~iA~dlR~~Vre~l~~G~Sd~eI~~~mv~RYG 71 (90)
T 2kw0_A 19 QLTEELRCPKCQNNSIADSNSMIATDLRQKVYELMQEGKSKKEIVDYMVARYG 71 (90)
T ss_dssp HHHHSSBCSCTTSCTTTSCCCHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHT
T ss_pred HHHHcCcCCCCCCCchhhcCcHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhcC
Confidence 3444444444445566665442 4667899999999999999998
No 28
>1m5q_A SMAP3, small nuclear ribonucleoprotein homolog, SM-like P; OB-like fold, B-sheet toroid, 14-MER, cadmium-binding site, translation; 2.00A {Pyrobaculum aerophilum} SCOP: b.38.1.1
Probab=59.46 E-value=29 Score=22.61 Aligned_cols=54 Identities=17% Similarity=0.275 Sum_probs=37.5
Q ss_pred eEEEEecccCCCCCHHHHHHHHhhhcccceEEeeCCCCcEEEEc-------------CChHHHHHHHHhh
Q psy8931 19 KVTLVNNLDVYGIDLKEFCKLCQHGVAASTCINMVNNAAQVQVQ-------------GNQIVFVHNLLTE 75 (95)
Q Consensus 19 ~vT~V~Gle~f~idl~~lak~lkk~~acs~sv~~~~g~~eI~iQ-------------Gd~~~~v~~~L~~ 75 (95)
.|..|.-.+.- +|...|++++.+. --+.+...+++..|+|| |..++++.+++.+
T Consensus 58 nI~~I~~~d~~-~d~~~f~~~~~r~--~pg~vk~~~e~~~v~v~~~~~v~~~gveg~g~~a~r~~~~~~~ 124 (130)
T 1m5q_A 58 YIVHIDSTERR-IDMREFAKQAEKI--FPGMVKYIEETNVVLIGDKVRVSEIGVEGVGPVAERAKRLFEE 124 (130)
T ss_dssp GEEEEEECCCC-CCHHHHHHHHHHH--STTCEEEETTTTEEEETTTEEEETTEEECCSHHHHHHHHHHHH
T ss_pred eEEEEEcCCcc-cCHHHHHHHHhhc--CCCceeeeeccceEEEeeeEEeeccccccCChHHHHHHHHHHH
Confidence 35666666654 8999999999987 44455544454455555 6778888888776
No 29
>1n91_A ORF, hypothetical protein; alpha+beta, northeast structural genomics consortium, PSI, P structure initiative, NESG; NMR {Escherichia coli} SCOP: d.206.1.1 PDB: 1yh5_A
Probab=55.41 E-value=9.2 Score=24.42 Aligned_cols=26 Identities=15% Similarity=0.216 Sum_probs=23.0
Q ss_pred cCChHHHHHHHHhhhcCCCcCceEEc
Q psy8931 62 QGNQIVFVHNLLTEKFNIQKRFIRGL 87 (95)
Q Consensus 62 QGd~~~~v~~~L~~~~gip~~~I~~~ 87 (95)
.|---..+.+||.+.+|+|+..|+++
T Consensus 48 dGkAN~ali~~LAk~l~V~ks~V~Iv 73 (108)
T 1n91_A 48 DGQANSHLVKFLGKQFRVAKSQVVIE 73 (108)
T ss_dssp HHHHHHHHHHHHHHHTCCCTTTEEES
T ss_pred CChHHHHHHHHHHHHhCCccceEEEE
Confidence 46667889999999999999999986
No 30
>3djh_A Macrophage migration inhibitory factor; homotrimer, cytokine, inflammatory response, isomerase, phosphoprotein; 1.25A {Homo sapiens} SCOP: d.80.1.3 PDB: 1ca7_A* 1ljt_A* 2ooh_A* 2ooz_A* 3b9s_A* 2oow_A* 3ce4_A 3dji_A* 3ijg_A* 3ijj_A* 3smb_A* 3smc_A* 3u18_A* 4f2k_A* 1gd0_A* 1gcz_A* 3jsf_A* 3jsg_A* 3jtu_A* 3l5p_A* ...
Probab=53.29 E-value=9.6 Score=23.56 Aligned_cols=30 Identities=17% Similarity=0.224 Sum_probs=24.2
Q ss_pred cEEEEcCC--------hHHHHHHHHhhhcCCCcCceEE
Q psy8931 57 AQVQVQGN--------QIVFVHNLLTEKFNIQKRFIRG 86 (95)
Q Consensus 57 ~eI~iQGd--------~~~~v~~~L~~~~gip~~~I~~ 86 (95)
.+|..=|. +...+.++|.++.|+|++.|.+
T Consensus 59 ~~v~sig~~~~~~n~~~s~~i~~~l~~~Lgi~~~riyI 96 (114)
T 3djh_A 59 CSLHSIGKIGGAQNRSYSKLLCGLLAERLRISPDRVYI 96 (114)
T ss_dssp EEEEESSCCSHHHHHHHHHHHHHHHHHHHCCCGGGEEE
T ss_pred EEEEEccCCCHHHHHHHHHHHHHHHHHHhCcCcceEEE
Confidence 56665565 5678889999999999999887
No 31
>3kan_A D-dopachrome tautomerase; immune response, cytokine, cytokine-inhibitor C; HET: RW1; 1.13A {Homo sapiens} SCOP: d.80.1.3 PDB: 1dpt_A* 3ker_A*
Probab=50.53 E-value=11 Score=23.56 Aligned_cols=20 Identities=15% Similarity=0.178 Sum_probs=17.2
Q ss_pred HHHHHHHhhhcCCCcCceEE
Q psy8931 67 VFVHNLLTEKFNIQKRFIRG 86 (95)
Q Consensus 67 ~~v~~~L~~~~gip~~~I~~ 86 (95)
..+.++|.++.|+|++.|.+
T Consensus 78 ~~i~~~l~~~Lgi~~~RiyI 97 (117)
T 3kan_A 78 AHFFEFLTKELALGQDRILI 97 (117)
T ss_dssp HHHHHHHHHHHTCCGGGEEE
T ss_pred HHHHHHHHHHhCcCcCeEEE
Confidence 56778888899999999887
No 32
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=47.86 E-value=16 Score=19.61 Aligned_cols=21 Identities=5% Similarity=0.004 Sum_probs=16.3
Q ss_pred HHHHHHHHhhhcCCCcCceEE
Q psy8931 66 IVFVHNLLTEKFNIQKRFIRG 86 (95)
Q Consensus 66 ~~~v~~~L~~~~gip~~~I~~ 86 (95)
...+.+.|.+..|+|+++|.+
T Consensus 21 ~~~lt~~l~~~lg~~~~~v~V 41 (64)
T 3abf_A 21 VRRLTEMASRLLGEPYEEVRV 41 (64)
T ss_dssp HHHHHHHHHHHTTCCGGGEEE
T ss_pred HHHHHHHHHHHhCCCcccEEE
Confidence 445666777778999999987
No 33
>4dh4_A MIF; trimer, isomerase; 1.82A {Toxoplasma gondii}
Probab=47.66 E-value=13 Score=22.78 Aligned_cols=22 Identities=9% Similarity=0.022 Sum_probs=18.7
Q ss_pred hHHHHHHHHhhhcCCCcCceEE
Q psy8931 65 QIVFVHNLLTEKFNIQKRFIRG 86 (95)
Q Consensus 65 ~~~~v~~~L~~~~gip~~~I~~ 86 (95)
+...+.++|.+..|+|++.|.+
T Consensus 76 l~~~i~~~l~~~Lgi~~~riyI 97 (114)
T 4dh4_A 76 IAAALSAACERHLGVPKNRIYT 97 (114)
T ss_dssp HHHHHHHHHHHHHCCCGGGEEE
T ss_pred HHHHHHHHHHHHhCcCcccEEE
Confidence 4567888888999999999987
No 34
>2x4k_A 4-oxalocrotonate tautomerase; isomerase; 1.10A {Staphylococcus aureus}
Probab=44.44 E-value=15 Score=19.32 Aligned_cols=21 Identities=10% Similarity=0.107 Sum_probs=15.9
Q ss_pred HHHHHHHHhhhcCCCcCceEE
Q psy8931 66 IVFVHNLLTEKFNIQKRFIRG 86 (95)
Q Consensus 66 ~~~v~~~L~~~~gip~~~I~~ 86 (95)
.+.|.+.|.+.+|+|++++.+
T Consensus 23 ~~~l~~~l~~~lg~p~~~v~v 43 (63)
T 2x4k_A 23 VSEVTDAVEKTTGANRQAIHV 43 (63)
T ss_dssp HHHHHHHHHHHHCCCGGGCEE
T ss_pred HHHHHHHHHHHhCcCcccEEE
Confidence 445666677778999998887
No 35
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=44.05 E-value=33 Score=22.85 Aligned_cols=61 Identities=13% Similarity=0.198 Sum_probs=42.7
Q ss_pred cCCeeEEEEecccCC-CCCHHHHHHHHhhhcccceEEee-CCCC--cEEEEcCChHHHHHHHHhh
Q psy8931 15 SGNKKVTLVNNLDVY-GIDLKEFCKLCQHGVAASTCINM-VNNA--AQVQVQGNQIVFVHNLLTE 75 (95)
Q Consensus 15 ~g~K~vT~V~Gle~f-~idl~~lak~lkk~~acs~sv~~-~~g~--~eI~iQGd~~~~v~~~L~~ 75 (95)
.||..+..|+|.+.- .-.+..-|..|++.|.-..+-.- .+|+ ..|...||..+.+.+.|.+
T Consensus 39 ~gn~l~i~itgvpeqvrkelakeaerl~~efni~v~y~imgsgsgvm~i~f~gddlea~ekalke 103 (170)
T 4hhu_A 39 SGNRLVIVITGVPEQVRKELAKEAERLKAEFNINVQYQIMGSGSGVMVIVFEGDDLEALEKALKE 103 (170)
T ss_dssp ETTEEEEEEESCCHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEEEECSCHHHHHHHHHH
T ss_pred eCCEEEEEEeCCcHHHHHHHHHHHHHHHHhcceEEEEEEEeCCceEEEEEEecCcHHHHHHHHHH
Confidence 488899999998641 22344455567888877765553 2333 7899999999888887765
No 36
>3td3_A Outer membrane protein OMP38; OMPA-like fold, cell-WALL attachment, peptidoglycan-binding, protein,peptide binding protein; 1.59A {Acinetobacter baumannii} PDB: 3td4_A* 3td5_A*
Probab=43.84 E-value=18 Score=22.46 Aligned_cols=23 Identities=13% Similarity=0.179 Sum_probs=19.5
Q ss_pred HHHHHHHHhhhcCCCcCceEEcc
Q psy8931 66 IVFVHNLLTEKFNIQKRFIRGLE 88 (95)
Q Consensus 66 ~~~v~~~L~~~~gip~~~I~~~~ 88 (95)
...|.+||.+++|+|...|.+..
T Consensus 71 A~aV~~~L~~~~Gi~~~ri~~~g 93 (123)
T 3td3_A 71 ANSVKSALVNEYNVDASRLSTQG 93 (123)
T ss_dssp HHHHHHHHHHHSCCCGGGEEEEE
T ss_pred HHHHHHHHHHhhCCCHHHEEEEE
Confidence 57899999987899999998753
No 37
>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP} SCOP: d.80.1.1 PDB: 4otc_A 4ota_A 4otb_A 1bjp_A 2fm7_A
Probab=43.67 E-value=16 Score=19.43 Aligned_cols=22 Identities=14% Similarity=0.122 Sum_probs=16.7
Q ss_pred hHHHHHHHHhhhcCCCcCceEE
Q psy8931 65 QIVFVHNLLTEKFNIQKRFIRG 86 (95)
Q Consensus 65 ~~~~v~~~L~~~~gip~~~I~~ 86 (95)
....|.+.|.+.+|+|+..+.+
T Consensus 19 l~~~i~~~l~~~lg~p~~~v~v 40 (62)
T 1otf_A 19 LIRQVSEAMANSLDAPLERVRV 40 (62)
T ss_dssp HHHHHHHHHHHHHTCCGGGCEE
T ss_pred HHHHHHHHHHHHhCcCcccEEE
Confidence 3456677777778999998876
No 38
>3fwu_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.80A {Leishmania major}
Probab=43.50 E-value=16 Score=23.44 Aligned_cols=22 Identities=18% Similarity=0.046 Sum_probs=18.6
Q ss_pred hHHHHHHHHhhhcCCCcCceEE
Q psy8931 65 QIVFVHNLLTEKFNIQKRFIRG 86 (95)
Q Consensus 65 ~~~~v~~~L~~~~gip~~~I~~ 86 (95)
....+.++|.++.|||++.|.+
T Consensus 97 ~s~~i~~~l~~~LgI~~~riyI 118 (133)
T 3fwu_A 97 VTSIVTAAITKECGIVADRIFV 118 (133)
T ss_dssp HHHHHHHHHHHHHCCCGGGEEE
T ss_pred HHHHHHHHHHHHhCcChhhEEE
Confidence 3467888899999999999887
No 39
>2opa_A Probable tautomerase YWHB; homohexamer, 4-oxalocrotonate tautomerase, inhibitor, 2-FLUO hydroxycinnamate, isomerase; HET: FHC; 2.40A {Bacillus subtilis} PDB: 2op8_A*
Probab=42.80 E-value=17 Score=19.29 Aligned_cols=21 Identities=14% Similarity=0.017 Sum_probs=16.2
Q ss_pred HHHHHHHHhhhcCCCcCceEE
Q psy8931 66 IVFVHNLLTEKFNIQKRFIRG 86 (95)
Q Consensus 66 ~~~v~~~L~~~~gip~~~I~~ 86 (95)
...|.+.|.+.+|+|+..+.+
T Consensus 20 ~~~i~~~l~~~lg~~~~~v~V 40 (61)
T 2opa_A 20 VEKVTEAVKETTGASEEKIVV 40 (61)
T ss_dssp HHHHHHHHHHHHCCCGGGCEE
T ss_pred HHHHHHHHHHHhCcCcCeEEE
Confidence 455667777778999998876
No 40
>3t5s_A Gilaa.00834.A, macrophage migration inhibitory factor; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Giardia lamblia}
Probab=42.75 E-value=17 Score=23.41 Aligned_cols=23 Identities=13% Similarity=0.166 Sum_probs=19.7
Q ss_pred ChHHHHHHHHhhhcCCCcCceEE
Q psy8931 64 NQIVFVHNLLTEKFNIQKRFIRG 86 (95)
Q Consensus 64 d~~~~v~~~L~~~~gip~~~I~~ 86 (95)
.....|.++|.+..|+|++.|.+
T Consensus 96 ~~s~~i~~~l~~~Lgi~~~riyI 118 (135)
T 3t5s_A 96 SISAAITGCLTQHFKVKPERVYI 118 (135)
T ss_dssp HHHHHHHHHHHHHHCCCGGGEEE
T ss_pred hHHHHHHHHHHHhcccCccEEEE
Confidence 35578889999999999999987
No 41
>3fwt_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.90A {Leishmania major}
Probab=42.75 E-value=17 Score=23.30 Aligned_cols=22 Identities=14% Similarity=0.018 Sum_probs=19.0
Q ss_pred hHHHHHHHHhhhcCCCcCceEE
Q psy8931 65 QIVFVHNLLTEKFNIQKRFIRG 86 (95)
Q Consensus 65 ~~~~v~~~L~~~~gip~~~I~~ 86 (95)
....+.++|.+..|||++.|.+
T Consensus 97 ~s~~i~~~l~~~LgI~~~rvyI 118 (133)
T 3fwt_A 97 MTPRIAAAITKECGIPAERIYV 118 (133)
T ss_dssp HHHHHHHHHHHHHCCCGGGEEE
T ss_pred HHHHHHHHHHHHhCcChhhEEE
Confidence 4577888999999999999887
No 42
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=37.43 E-value=24 Score=21.19 Aligned_cols=70 Identities=4% Similarity=0.105 Sum_probs=38.2
Q ss_pred eeEEEEecccCCCCCHHHHHHHHhhhc-ccceEEeeCCCC----cEEEEcCC----------hHHHHHHHHhhhcCCCcC
Q psy8931 18 KKVTLVNNLDVYGIDLKEFCKLCQHGV-AASTCINMVNNA----AQVQVQGN----------QIVFVHNLLTEKFNIQKR 82 (95)
Q Consensus 18 K~vT~V~Gle~f~idl~~lak~lkk~~-acs~sv~~~~g~----~eI~iQGd----------~~~~v~~~L~~~~gip~~ 82 (95)
|-+-++.|..-|.-+++++....-..- +|...+....+. -.+.+.|. ....+.+.|.+.+|+|.
T Consensus 4 ~D~Iiv~G~nv~P~eIE~~l~~~p~v~~~~~v~v~~~~~~e~l~~~ve~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~- 82 (109)
T 3gxs_A 4 DDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLFTDDYGRLQALTREITRQLKDEILVTP- 82 (109)
T ss_dssp GSCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHHHHHHSSCC-
T ss_pred cCEEEECCEEECHHHHHHHHHhCCCcCCcEEEEEEcCCCceEEEEEEEEcCccccchhHHHHHHHHHHHHHHHhhCCce-
Confidence 456678888777777777666643322 222223322222 22333442 23456666666789997
Q ss_pred ceEEcc
Q psy8931 83 FIRGLE 88 (95)
Q Consensus 83 ~I~~~~ 88 (95)
.|.+++
T Consensus 83 ~v~~v~ 88 (109)
T 3gxs_A 83 RVKLVP 88 (109)
T ss_dssp EEEEEC
T ss_pred EEEEEC
Confidence 576654
No 43
>4e9j_A General secretion pathway protein D; homodimer, XCPQ, periplasmic domain, structural protein, PER space, outer membrane; 2.03A {Pseudomonas aeruginosa} PDB: 4ec5_A
Probab=36.34 E-value=53 Score=22.83 Aligned_cols=53 Identities=11% Similarity=0.161 Sum_probs=40.3
Q ss_pred CCCCHHHHHHHHhhhcccceEEeeCCCCcEEEEcCC--hHHHHHHHHhhhcCCCcC
Q psy8931 29 YGIDLKEFCKLCQHGVAASTCINMVNNAAQVQVQGN--QIVFVHNLLTEKFNIQKR 82 (95)
Q Consensus 29 f~idl~~lak~lkk~~acs~sv~~~~g~~eI~iQGd--~~~~v~~~L~~~~gip~~ 82 (95)
...+.+++++.|+..++-.+++...+....+.|.|. ..+++.+++.. ...|..
T Consensus 121 ~~~~a~~l~~~L~~lls~~g~v~~d~~tN~Liv~g~~~~i~~i~~li~~-lD~p~~ 175 (246)
T 4e9j_A 121 QQSPVSELIPLIRPLVPQYGHLAAVPSANALIISDRSANIARIEDVIRQ-LDQKGS 175 (246)
T ss_dssp SSSCHHHHHHHHGGGSCTTSEEEEEGGGTEEEEEECHHHHHHHHHHHHH-HHTCSC
T ss_pred cCCCHHHHHHHHHHhcCCCceEEEcCCCCEEEEEcCHHHHHHHHHHHHH-hccccc
Confidence 356999999999998877788887666678889986 56677777766 555543
No 44
>3ry0_A Putative tautomerase; oxalocrotonate tautomerase family, isomerase; 1.40A {Streptomyces achromogenes}
Probab=36.04 E-value=25 Score=19.22 Aligned_cols=21 Identities=10% Similarity=-0.061 Sum_probs=15.6
Q ss_pred HHHHHHHHhhhcCCCcCceEE
Q psy8931 66 IVFVHNLLTEKFNIQKRFIRG 86 (95)
Q Consensus 66 ~~~v~~~L~~~~gip~~~I~~ 86 (95)
.+.|.+.|.+.+|+|++.+.+
T Consensus 20 ~~~it~~~~~~lg~p~~~v~V 40 (65)
T 3ry0_A 20 GEALTAAAHETLGTPVEAVRV 40 (65)
T ss_dssp HHHHHHHHHHHHCCCGGGCEE
T ss_pred HHHHHHHHHHHhCcCcccEEE
Confidence 345666677779999998876
No 45
>1sse_B AP-1 like transcription factor YAP1; disulfide bond, nuclear export signal, NES, redox- regulation, transcription activator; NMR {Saccharomyces cerevisiae} SCOP: g.78.1.1
Probab=35.33 E-value=19 Score=22.23 Aligned_cols=22 Identities=23% Similarity=0.371 Sum_probs=18.8
Q ss_pred cCC-CCCHHHHHHHHhhhcccce
Q psy8931 27 DVY-GIDLKEFCKLCQHGVAAST 48 (95)
Q Consensus 27 e~f-~idl~~lak~lkk~~acs~ 48 (95)
+.| .+|+..|+.+|+.+.-||+
T Consensus 45 P~~~~vDId~LC~eLk~kAKCsg 67 (86)
T 1sse_B 45 PKYSDIDVDGLCSELMAKAKCSE 67 (86)
T ss_dssp SCCSSCCHHHHHHHHTTTCCEET
T ss_pred cchhhcCHHHHHHHHHHhCccCC
Confidence 344 6899999999999999986
No 46
>3u7q_B Nitrogenase molybdenum-iron protein beta chain; multiple rossmann fold domains, reductase, nitrogen fixing, oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1fp4_B* 1g21_B* 1g20_B* 1m1n_B* 1l5h_B* 1m1y_B* 1m34_B* 1n2c_B* 2afh_B* 2afi_B* 2afk_B* 2min_B* 3k1a_B* 3min_B*
Probab=34.45 E-value=10 Score=29.95 Aligned_cols=66 Identities=14% Similarity=0.207 Sum_probs=40.3
Q ss_pred CCeeEEEEecccCCCCCHHHHHHHHhhhcccce-------------------------EEeeC---CCC-cEEEEcCChH
Q psy8931 16 GNKKVTLVNNLDVYGIDLKEFCKLCQHGVAAST-------------------------CINMV---NNA-AQVQVQGNQI 66 (95)
Q Consensus 16 g~K~vT~V~Gle~f~idl~~lak~lkk~~acs~-------------------------sv~~~---~g~-~eI~iQGd~~ 66 (95)
.+..|.+|-|+..|.-|+.++-+.|.. ++.-. ++.+. +.+ .-|.++--..
T Consensus 220 ~~~~VNIig~~~~~~gD~~elkrlL~~-~Gi~v~~lpd~s~~ld~p~~~~~~~~~ggtt~~ei~~~~~A~~niv~~~~~~ 298 (523)
T 3u7q_B 220 SNKKINIVPGFETYLGNFRVIKRMLSE-MGVGYSLLSDPEEVLDTPADGQFRMYAGGTTQEEMKDAPNALNTVLLQPWHL 298 (523)
T ss_dssp TTCCEEEECCSCCCHHHHHHHHHHHHH-TTCCEEESSCCTTTTSCCCSSCCCSCCCCBCHHHHHHGGGSSEEEESSGGGC
T ss_pred CCCeEEEECCCCCChhHHHHHHHHHHH-cCCeEEEecCchhcccccccccccccCCCCCHHHHHHhhcCcEEEEEccchH
Confidence 456799998876655566666666553 33332 22221 112 3444443346
Q ss_pred HHHHHHHhhhcCCCcC
Q psy8931 67 VFVHNLLTEKFNIQKR 82 (95)
Q Consensus 67 ~~v~~~L~~~~gip~~ 82 (95)
...+++|.++||+|--
T Consensus 299 ~~~A~~Le~~~GiP~i 314 (523)
T 3u7q_B 299 EKTKKFVEGTWKHEVP 314 (523)
T ss_dssp HHHHHHHHHTSCCCCC
T ss_pred HHHHHHHHHHhCCCee
Confidence 7899999999999964
No 47
>3mb2_A 4-oxalocrotonate tautomerase family enzyme - ALPH; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus}
Probab=34.37 E-value=30 Score=19.32 Aligned_cols=21 Identities=10% Similarity=0.048 Sum_probs=15.7
Q ss_pred HHHHHHHHhhhcCCCcCceEE
Q psy8931 66 IVFVHNLLTEKFNIQKRFIRG 86 (95)
Q Consensus 66 ~~~v~~~L~~~~gip~~~I~~ 86 (95)
...|.+.|.+.+|+|++.+.+
T Consensus 21 ~~~it~~l~~~lg~p~~~v~V 41 (72)
T 3mb2_A 21 ARALSAAAAAAFDVPLAEVRL 41 (72)
T ss_dssp HHHHHHHHHHHHTCCGGGEEE
T ss_pred HHHHHHHHHHHhCCCcccEEE
Confidence 345666667778999998887
No 48
>3b64_A Macrophage migration inhibitory factor-like protein; cytokine, MIF, LM1740MIF, lmmif, unknown function; 1.03A {Leishmania major}
Probab=33.51 E-value=30 Score=20.90 Aligned_cols=22 Identities=18% Similarity=0.046 Sum_probs=17.9
Q ss_pred hHHHHHHHHhhhcCCCcCceEE
Q psy8931 65 QIVFVHNLLTEKFNIQKRFIRG 86 (95)
Q Consensus 65 ~~~~v~~~L~~~~gip~~~I~~ 86 (95)
....+.++|.+..|+|++.|.+
T Consensus 76 l~~~i~~~l~~~lgi~~~~v~I 97 (112)
T 3b64_A 76 VTSIVTAAITKECGIVADRIFV 97 (112)
T ss_dssp HHHHHHHHHHHHHCCCGGGEEE
T ss_pred HHHHHHHHHHHHhCcCcceEEE
Confidence 4556777888889999999887
No 49
>1in0_A YAJQ protein, HI1034; alpha and beta sandwich, structural genomics, structure 2 function project, S2F, unknown function; 2.14A {Haemophilus influenzae} SCOP: d.58.49.1 d.58.49.1
Probab=33.05 E-value=67 Score=21.96 Aligned_cols=64 Identities=22% Similarity=0.228 Sum_probs=37.6
Q ss_pred CeeEEEEecccCCCCCHHHHHHHHhh-hcccceEEeeCCCCcEEEEcCChHHH---HHHHHhh-hcCCCcCceEE
Q psy8931 17 NKKVTLVNNLDVYGIDLKEFCKLCQH-GVAASTCINMVNNAAQVQVQGNQIVF---VHNLLTE-KFNIQKRFIRG 86 (95)
Q Consensus 17 ~K~vT~V~Gle~f~idl~~lak~lkk-~~acs~sv~~~~g~~eI~iQGd~~~~---v~~~L~~-~~gip~~~I~~ 86 (95)
+..+|+..|++.- ..+++.+.++- ++-.-+++.. ++|-|.|-.++. +..+|.+ .+++|-.|.-+
T Consensus 93 rq~~~lk~GI~~e--~AKkIvK~IKdsklKVqa~IQG----d~vRVtgKkrDDLQ~viallk~~d~~~plQF~Nf 161 (163)
T 1in0_A 93 SKEIKLKQGIETE--MAKKITKLVKDSKIKVQTQIQG----EQVRVTGKSRDDLQAVIQLVKSAELGQPFQFNNF 161 (163)
T ss_dssp EEEEEECCSCCHH--HHHHHHHHHHHHTCSEEEEEET----TEEEEEESCHHHHHHHHHHHHHSCCSSCCEEEEE
T ss_pred EEEEEeecccCHH--HHHHHHHHHHhcCCcceeEecC----cEEEEecCCHHHHHHHHHHHHhcCCCCCeeeccC
Confidence 3456666677641 23444444442 2335556665 677777766555 4666663 68999887654
No 50
>1hfo_A Migration inhibitory factor; tautomerase; 1.65A {Trichinella spiralis} SCOP: d.80.1.3
Probab=32.94 E-value=31 Score=20.76 Aligned_cols=30 Identities=17% Similarity=0.176 Sum_probs=22.2
Q ss_pred cEEEEcC--------ChHHHHHHHHhhhcCCCcCceEE
Q psy8931 57 AQVQVQG--------NQIVFVHNLLTEKFNIQKRFIRG 86 (95)
Q Consensus 57 ~eI~iQG--------d~~~~v~~~L~~~~gip~~~I~~ 86 (95)
-+|.+-| .....+.++|.+..|+|++.|.+
T Consensus 59 i~i~~~~g~~~eqk~~l~~~i~~~l~~~lgi~~~~v~I 96 (113)
T 1hfo_A 59 GTLMSIGGIEPSRNRDHSAKLFDHLNTKLGIPKNRMYI 96 (113)
T ss_dssp EEEEESSSCSHHHHHHHHHHHHHHHHHHHCCCGGGEEE
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHHHhCcCcCeEEE
Confidence 4666666 24456777788889999999887
No 51
>2hqs_H Peptidoglycan-associated lipoprotein; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: d.79.7.1 PDB: 2w8b_C 1oap_A
Probab=32.60 E-value=33 Score=21.19 Aligned_cols=21 Identities=14% Similarity=-0.031 Sum_probs=18.2
Q ss_pred HHHHHHHHhhhcCCCcCceEEc
Q psy8931 66 IVFVHNLLTEKFNIQKRFIRGL 87 (95)
Q Consensus 66 ~~~v~~~L~~~~gip~~~I~~~ 87 (95)
++.|.+||.+ .|||.+.|.+.
T Consensus 63 A~aV~~~L~~-~Gi~~~ri~~~ 83 (118)
T 2hqs_H 63 ANAVKMYLQG-KGVSADQISIV 83 (118)
T ss_dssp HHHHHHHHHH-TTCCGGGEEEE
T ss_pred HHHHHHHHHH-cCCCHHHEEEE
Confidence 5789999999 79999998874
No 52
>1uiz_A MIF, macrophage migration inhibitory factor; cytokine, tautomerase; 2.50A {Xenopus laevis} SCOP: d.80.1.3
Probab=31.61 E-value=34 Score=20.72 Aligned_cols=30 Identities=17% Similarity=0.229 Sum_probs=22.2
Q ss_pred cEEEEcC--------ChHHHHHHHHhhhcCCCcCceEE
Q psy8931 57 AQVQVQG--------NQIVFVHNLLTEKFNIQKRFIRG 86 (95)
Q Consensus 57 ~eI~iQG--------d~~~~v~~~L~~~~gip~~~I~~ 86 (95)
-+|.+-| .....+.++|.+..|+|++.|.+
T Consensus 60 v~i~~~~g~~~eqk~~l~~~i~~~l~~~lgi~~~~v~I 97 (115)
T 1uiz_A 60 CSLCSIGKIGGPQNKSYTKLLCDILTKQLNIPANRVYI 97 (115)
T ss_dssp EEEEESSCCSHHHHHHHHHHHHHHHHHHHCCCGGGEEE
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHHHhCcCcceEEE
Confidence 4666666 24456777788889999999887
No 53
>2wkb_A Macrophage migration inhibitory factor; cytokine; HET: CME; 1.78A {Plasmodium berghei} PDB: 3gad_A 3gac_A 2wkf_A*
Probab=30.53 E-value=36 Score=21.14 Aligned_cols=22 Identities=9% Similarity=0.153 Sum_probs=17.7
Q ss_pred hHHHHHHHHhhhcCCCcCceEE
Q psy8931 65 QIVFVHNLLTEKFNIQKRFIRG 86 (95)
Q Consensus 65 ~~~~v~~~L~~~~gip~~~I~~ 86 (95)
....|.++|.+..|+|++.|.+
T Consensus 76 l~~~i~~~l~~~lgi~~~~v~I 97 (125)
T 2wkb_A 76 LADKITKILSNHLSVKPRRVYI 97 (125)
T ss_dssp HHHHHHHHHHHHHCCCGGGEEE
T ss_pred HHHHHHHHHHHHhCcCcceEEE
Confidence 4556777788889999999987
No 54
>2xcz_A Possible ATLS1-like light-inducible protein; cytokine, tautomerase, immune system, cyanobacterium; 1.64A {Prochlorococcus marinus}
Probab=30.35 E-value=37 Score=20.56 Aligned_cols=30 Identities=17% Similarity=0.156 Sum_probs=21.9
Q ss_pred cEEEEcC--------ChHHHHHHHHhhhcCCCcCceEE
Q psy8931 57 AQVQVQG--------NQIVFVHNLLTEKFNIQKRFIRG 86 (95)
Q Consensus 57 ~eI~iQG--------d~~~~v~~~L~~~~gip~~~I~~ 86 (95)
-+|.+-| .....+.++|.+..|+|++.|.+
T Consensus 60 v~i~~~~g~t~eqk~~l~~~i~~~l~~~lgi~~~~v~I 97 (115)
T 2xcz_A 60 VEVKSIGALDGSRTQEVSELVCGHIEQNLGIPADRIYI 97 (115)
T ss_dssp EEEEESSCCCTTHHHHHHHHHHHHHHHHHCCCGGGEEE
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHHHhCcCcccEEE
Confidence 4566555 24456777788889999999887
No 55
>2os5_A Acemif; macrophage migration inhibitory factor, cytokine, nematode,; 1.60A {Ancylostoma ceylanicum} PDB: 3rf4_A* 3rf5_A*
Probab=30.30 E-value=37 Score=20.80 Aligned_cols=30 Identities=10% Similarity=0.153 Sum_probs=22.2
Q ss_pred cEEEEcC--------ChHHHHHHHHhhhcCCCcCceEE
Q psy8931 57 AQVQVQG--------NQIVFVHNLLTEKFNIQKRFIRG 86 (95)
Q Consensus 57 ~eI~iQG--------d~~~~v~~~L~~~~gip~~~I~~ 86 (95)
-+|.+-| .....+.++|.+..|+|++.|.+
T Consensus 60 i~I~~~~g~~~eqk~~l~~~i~~~l~~~lgi~~~~v~I 97 (119)
T 2os5_A 60 IKVESIGALSADDNIRHTQKITQFCQDTLKLPKDKVII 97 (119)
T ss_dssp EEEEESSCCCHHHHHHHHHHHHHHHHHHHCCCGGGEEE
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHHHhCcCcccEEE
Confidence 4666666 24456777788889999999887
No 56
>3m21_A Probable tautomerase HP_0924; 4-oxalocrotonate tautomerase, catalytic proline, hexamer, BE beta, isomerase; 1.90A {Helicobacter pylori} PDB: 2orm_A
Probab=30.14 E-value=35 Score=18.72 Aligned_cols=21 Identities=29% Similarity=0.184 Sum_probs=15.9
Q ss_pred HHHHHHHHhhhcCCCcCceEE
Q psy8931 66 IVFVHNLLTEKFNIQKRFIRG 86 (95)
Q Consensus 66 ~~~v~~~L~~~~gip~~~I~~ 86 (95)
...|.+.|.+.+|+|++.+.+
T Consensus 23 ~~~lt~~l~~~lg~p~~~v~V 43 (67)
T 3m21_A 23 IEGVSDLMVKVLNKNKASIVV 43 (67)
T ss_dssp HHHHHHHHHHHHCCCGGGCEE
T ss_pred HHHHHHHHHHHHCcCcccEEE
Confidence 455666677779999998886
No 57
>3hlu_A Uncharacterized protein DUF2179; alpha-beta half sandwich, structural genomics, PSI-2, protei structure initiative; 2.65A {Eubacterium ventriosum}
Probab=29.83 E-value=94 Score=18.70 Aligned_cols=65 Identities=17% Similarity=0.101 Sum_probs=45.2
Q ss_pred cCCeeEEEEecccCCCCCHHHHHHHHhhhcccceEEeeCCCC--------cEEEEcCChHHHHHHHHhhhcCCCcCceEE
Q psy8931 15 SGNKKVTLVNNLDVYGIDLKEFCKLCQHGVAASTCINMVNNA--------AQVQVQGNQIVFVHNLLTEKFNIQKRFIRG 86 (95)
Q Consensus 15 ~g~K~vT~V~Gle~f~idl~~lak~lkk~~acs~sv~~~~g~--------~eI~iQGd~~~~v~~~L~~~~gip~~~I~~ 86 (95)
..+|.|++|+. ++++++..+...+.=|+|+.+..|. ..+.+.=.....+.+++.+ -=|..||.+
T Consensus 6 ~~~k~v~IIS~------~~eeI~~~I~~~l~rGvT~~~g~G~Ys~~~~~vl~~Vv~r~e~~~l~~~I~~--iDp~AFi~i 77 (96)
T 3hlu_A 6 DQQTMVYIVSA------KRKIIADRMLQELDLGVTMLQAVGAYKNNETEVIMCVMRKATLVKVRNLLKE--VDPDAFMIV 77 (96)
T ss_dssp CCCEEEEEECT------THHHHHHHHHHHSCCCCEEEECEESSSSSCCEEEEEEECHHHHHHHHHHHHT--TCTTCEEEE
T ss_pred CccEEEEEEeC------CHHHHHHHHHHhcCCCEEEEEEEEcccCCCEEEEEEEecHHHHHHHHHHHHH--HCCCeEEEE
Confidence 45688888862 6789999999999999999986653 4455665566666666655 224455554
Q ss_pred c
Q psy8931 87 L 87 (95)
Q Consensus 87 ~ 87 (95)
.
T Consensus 78 ~ 78 (96)
T 3hlu_A 78 S 78 (96)
T ss_dssp C
T ss_pred E
Confidence 3
No 58
>3m20_A 4-oxalocrotonate tautomerase, putative; DMPI, thermophIle, beta-alpha-beta, catalytic proline, isomerase; 2.37A {Archaeoglobus fulgidus}
Probab=29.65 E-value=39 Score=18.28 Aligned_cols=21 Identities=10% Similarity=0.184 Sum_probs=15.7
Q ss_pred HHHHHHHHhhhcCCCcCceEE
Q psy8931 66 IVFVHNLLTEKFNIQKRFIRG 86 (95)
Q Consensus 66 ~~~v~~~L~~~~gip~~~I~~ 86 (95)
...|.+.|.+.+|+|++.+.+
T Consensus 19 ~~~it~~~~~~lg~~~~~v~V 39 (62)
T 3m20_A 19 VERLTSVAAEIYGMDRSAITI 39 (62)
T ss_dssp HHHHHHHHHHHHTCCTTSCEE
T ss_pred HHHHHHHHHHHhCcCcceEEE
Confidence 345666677778999998886
No 59
>1dd4_C 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix- bundle, five-helix- bundle, alpha-beta structure; HET: TBR; 2.40A {Thermotoga maritima} SCOP: a.108.1.1
Probab=29.40 E-value=37 Score=17.82 Aligned_cols=16 Identities=19% Similarity=0.293 Sum_probs=11.0
Q ss_pred HHHHHHHhhhcCCCcC
Q psy8931 67 VFVHNLLTEKFNIQKR 82 (95)
Q Consensus 67 ~~v~~~L~~~~gip~~ 82 (95)
.++.+.|.++|||+..
T Consensus 19 ~eLvk~leekfGVsaa 34 (40)
T 1dd4_C 19 AELVKKLEDKFGVTAA 34 (40)
T ss_dssp HHHHHHHHHHTCCCSC
T ss_pred HHHHHHHHHHHCCCcc
Confidence 4566777777888754
No 60
>1gyx_A YDCE, B1461, hypothetical protein YDCE; tautomerase, isomerase, complete proteo; HET: EPE; 1.35A {Escherichia coli} SCOP: d.80.1.1 PDB: 1gyj_A* 1gyy_A*
Probab=28.82 E-value=37 Score=19.23 Aligned_cols=22 Identities=9% Similarity=0.086 Sum_probs=16.7
Q ss_pred hHHHHHHHHhhhcCCCcCceEE
Q psy8931 65 QIVFVHNLLTEKFNIQKRFIRG 86 (95)
Q Consensus 65 ~~~~v~~~L~~~~gip~~~I~~ 86 (95)
....|.+.|.+.+|+|.+.+.+
T Consensus 20 L~~~l~~~l~~~lgip~~~v~V 41 (76)
T 1gyx_A 20 LAADITDVIIRHLNSKDSSISI 41 (76)
T ss_dssp HHHHHHHHHHHHHTCCGGGCEE
T ss_pred HHHHHHHHHHHHhCcCCceEEE
Confidence 3455667777779999998876
No 61
>3ej9_A Alpha-subunit of trans-3-chloroacrylic acid dehal; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, isomerase, hydrolase; 1.50A {Pseudomonas pavonaceae} SCOP: d.80.1.1 PDB: 3ej3_A 1s0y_A 3ej7_A
Probab=27.97 E-value=39 Score=19.28 Aligned_cols=21 Identities=10% Similarity=-0.100 Sum_probs=15.4
Q ss_pred HHHHHHHHhhhcCCCcCceEE
Q psy8931 66 IVFVHNLLTEKFNIQKRFIRG 86 (95)
Q Consensus 66 ~~~v~~~L~~~~gip~~~I~~ 86 (95)
...|.+.|.+.+|+|++.+.+
T Consensus 21 ~~~it~~l~~~lg~p~~~v~V 41 (76)
T 3ej9_A 21 SAGLLRVISEATGEPRENIFF 41 (76)
T ss_dssp HHHHHHHHHHHHCCCGGGCEE
T ss_pred HHHHHHHHHHHHCcCcccEEE
Confidence 345666666778999988876
No 62
>3pdi_A Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=27.54 E-value=40 Score=26.11 Aligned_cols=62 Identities=16% Similarity=0.234 Sum_probs=37.7
Q ss_pred eeEEEEecccCCCCCHHHHHHHHhh---h----cccceEEeeCCC---C-cEEEEcCChHHHHHHHHhhhcCCC
Q psy8931 18 KKVTLVNNLDVYGIDLKEFCKLCQH---G----VAASTCINMVNN---A-AQVQVQGNQIVFVHNLLTEKFNIQ 80 (95)
Q Consensus 18 K~vT~V~Gle~f~idl~~lak~lkk---~----~acs~sv~~~~g---~-~eI~iQGd~~~~v~~~L~~~~gip 80 (95)
..|.++-++.. .-|+.++-..|.. . +..++++.+... . .-|.+.......++++|.++||+|
T Consensus 204 ~~VNiiG~~~~-~gd~~eik~lL~~~Gi~v~~~~~gg~~~~el~~~~~A~~niv~~~~~~~~~A~~Le~~~GiP 276 (483)
T 3pdi_A 204 HDVNLIGEYNI-AGEFWHVLPLLDELGLRVLCTLAGDARYREVQTMHRAEVNMMVCSKAMLNVARKLQETYGTP 276 (483)
T ss_dssp EEEEEESCCCB-TTGGGGTHHHHHHHTEEEEEEETSSBCHHHHTTGGGCSEEEEESCCTTHHHHHHHHHHHCCC
T ss_pred CeEEEEcCCCC-hhHHHHHHHHHHHCCCcEEEECCCcCCHHHHHhhhcCCEEEEEchhhHHHHHHHHHHHhCCC
Confidence 68888877643 4455444444433 2 222334433222 1 456666777788999999999999
No 63
>1mms_A Protein (ribosomal protein L11); RNA-protein complex, RNA, ribosome, translocation, thiostrep; 2.57A {Thermotoga maritima} SCOP: a.4.7.1 d.47.1.1 PDB: 1mvr_L 1oln_A* 1giy_L 1mj1_L* 1ml5_l* 1yl3_L 2b66_K 2b9n_K 2b9p_K 2jq7_A* 2k3f_A 1eg0_K 1jqm_A 1jqs_A 1jqt_A 1r2w_A 1r2x_A 487d_L 1pn8_L 1pn7_L
Probab=27.39 E-value=75 Score=20.96 Aligned_cols=52 Identities=25% Similarity=0.307 Sum_probs=35.3
Q ss_pred ccCCCCCHHHHHHHHhhhccc-ceEEeeCCCCcEEEEcCCh-------HHHHHHHHhhhcCCCc
Q psy8931 26 LDVYGIDLKEFCKLCQHGVAA-STCINMVNNAAQVQVQGNQ-------IVFVHNLLTEKFNIQK 81 (95)
Q Consensus 26 le~f~idl~~lak~lkk~~ac-s~sv~~~~g~~eI~iQGd~-------~~~v~~~L~~~~gip~ 81 (95)
|-.+|+++.+|+++|-.+-+- .+...+ .+|.||-|- ..-...+|.+..|+++
T Consensus 27 LG~~Gvni~~fck~fN~~T~~~~G~~ip----V~itv~~drsf~f~vk~Ppas~Ll~ka~g~~~ 86 (140)
T 1mms_A 27 LGQHGVNIMEFCKRFNAETADKAGMILP----VVITVYEDKSFTFIIKTPPASFLLKKAAGIEK 86 (140)
T ss_dssp HHTTTCCHHHHHHHHHHHTTTSCSSEEE----EEEEECTTSCEEEEECCCCHHHHHHHHHTCSS
T ss_pred ccccCCCHHHHHHHHHHHhhhcCCCeEE----EEEEEcCCCeEEEEEcCCCHHHHHHHHhCCCC
Confidence 456899999999999877432 233334 688888662 4445666766677765
No 64
>3ezj_A General secretion pathway protein GSPD; general secretory pathway, secretin, single chain antibody, transport, immune system, complex; 2.80A {Escherichia coli}
Probab=26.81 E-value=1e+02 Score=21.12 Aligned_cols=50 Identities=14% Similarity=0.159 Sum_probs=31.0
Q ss_pred CCCHHHHHHHHhhhcccc---------eEEeeCCCCcEEEEcCC--hHHHHHHHHhhhcCCC
Q psy8931 30 GIDLKEFCKLCQHGVAAS---------TCINMVNNAAQVQVQGN--QIVFVHNLLTEKFNIQ 80 (95)
Q Consensus 30 ~idl~~lak~lkk~~acs---------~sv~~~~g~~eI~iQGd--~~~~v~~~L~~~~gip 80 (95)
..+.+++|+.|+..++.+ +++...+.+..+.|.|+ ...++.+++.+ ..+|
T Consensus 181 ~a~A~dla~~L~~~~~~~~~~~~~~~~~~v~ad~rtNsliv~~~~~~~~~i~~lI~~-LD~p 241 (241)
T 3ezj_A 181 NASASEIARVLESLTKNSGENQPATLKSQIVADERTNSVIVSGDPATRDKMRRLIRR-LDSE 241 (241)
T ss_dssp SSCHHHHHHHHHTTC-------------CEEEETTTTEEEEEECHHHHHHHHHHHHH-TC--
T ss_pred cCCHHHHHHHHHHHhcccccCCCCCCceEEEEcCCcCeEEEECCHHHHHHHHHHHHH-hCCC
Confidence 458999999999877643 35666566678888886 45555555554 5443
No 65
>1x10_A Pyrrolidone-carboxylate peptidase; stability of protein, hydrolase; 2.00A {Pyrococcus furiosus} PDB: 1z8t_A 1z8x_A 1ioi_A 1x12_A 1z8w_A 2eo8_A 1iof_A 2df5_A
Probab=25.91 E-value=90 Score=21.52 Aligned_cols=51 Identities=16% Similarity=0.141 Sum_probs=31.7
Q ss_pred EEEecccCCCC---CH-HHHHHHHhhhcccceEEeeCCCCcEEEEc-CChHHHHHHHHhh
Q psy8931 21 TLVNNLDVYGI---DL-KEFCKLCQHGVAASTCINMVNNAAQVQVQ-GNQIVFVHNLLTE 75 (95)
Q Consensus 21 T~V~Gle~f~i---dl-~~lak~lkk~~acs~sv~~~~g~~eI~iQ-Gd~~~~v~~~L~~ 75 (95)
-+||||+.|+- |+ .++++.|....-.+..+.. .++-+- ++..+.+.+++.+
T Consensus 3 VLvTGF~PF~~~~~NPS~~~v~~L~~~~~~~~~i~~----~~lPv~~~~~~~~l~~~~~~ 58 (208)
T 1x10_A 3 VLVTGFEPFGGEKINPTERIAKDLDGIKIGDAQVFG----RVLPVVFGKAKEVLEKTLEE 58 (208)
T ss_dssp EEEEEECCCTTCSCCHHHHHHHHHTTCEETTEEEEE----EEECSSTTHHHHHHHHHHHH
T ss_pred EEEEeecCCCCCCCChHHHHHHHhhccCCCCeEEEE----EEEeeEHHHHHHHHHHHHHH
Confidence 47999999963 54 5688999887434444443 333332 4455566666655
No 66
>3ro0_A Pyrrolidone-carboxylate peptidase; hydrolase-hydrolase inhibitor complex; HET: TPT; 1.50A {Bacillus amyloliquefaciens} SCOP: c.56.4.1 PDB: 3rnz_A* 1aug_A
Probab=25.65 E-value=1.1e+02 Score=21.43 Aligned_cols=50 Identities=16% Similarity=0.216 Sum_probs=30.2
Q ss_pred EEecccCCCC---CHH-HHHHHHhhhcccceEEeeCCCCcEEEEc-CChHHHHHHHHhh
Q psy8931 22 LVNNLDVYGI---DLK-EFCKLCQHGVAASTCINMVNNAAQVQVQ-GNQIVFVHNLLTE 75 (95)
Q Consensus 22 ~V~Gle~f~i---dl~-~lak~lkk~~acs~sv~~~~g~~eI~iQ-Gd~~~~v~~~L~~ 75 (95)
+||||+.|+- |+. +++++|.+.++....+.. .++-+- ++..+.+.+++.+
T Consensus 6 LvTGF~PF~~~~~NPS~~~v~~L~~~i~~~~~i~~----~~lPv~y~~~~~~l~~~i~~ 60 (223)
T 3ro0_A 6 LLTGFDPFGGETVNPSWEAVKRLNGAAEGPASIVS----EQVPTVFYKSLAVLREAMKK 60 (223)
T ss_dssp EEEEECCCTTCSCCHHHHHHHHTTTCEETTEEEEE----EEECSCTTHHHHHHHHHHHH
T ss_pred EEEeCCCCCCCCCChHHHHHHHhccccCCCcEEEE----EEeeeEehhHHHHHHHHHHH
Confidence 8999999964 664 788999886533223332 233222 4455566666654
No 67
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=25.36 E-value=56 Score=27.14 Aligned_cols=43 Identities=12% Similarity=0.265 Sum_probs=36.1
Q ss_pred EEecccCCCCCHHHHHHHHhhhcccceEEeeCCC-CcEEEEcCCh
Q psy8931 22 LVNNLDVYGIDLKEFCKLCQHGVAASTCINMVNN-AAQVQVQGNQ 65 (95)
Q Consensus 22 ~V~Gle~f~idl~~lak~lkk~~acs~sv~~~~g-~~eI~iQGd~ 65 (95)
.|+|+-+ |+-..-+.-.|.+.++=+|.|....+ ..+|.+||+.
T Consensus 7 ~v~G~VQ-GVGFRPfv~~lA~~~~l~G~V~N~~~~gV~i~~~g~~ 50 (772)
T 4g9i_A 7 HVQGIVQ-AVGFRPFVYRIAHEHNLRGYVKNLGDAGVEIVVEGRE 50 (772)
T ss_dssp EECSSTT-TSSCHHHHHHHHHHTTCCCBCCCCSTTCEEEECCSCS
T ss_pred EEEEEEe-CCCccHHHHHHHHHcCCeEEEEECCCCeEEEEEEECH
Confidence 5778876 88888899999999999999997543 4999999974
No 68
>4hps_A Pyrrolidone-carboxylate peptidase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, hydrolase; 1.55A {Xenorhabdus bovienii} PDB: 4gxh_A
Probab=24.76 E-value=98 Score=21.82 Aligned_cols=51 Identities=18% Similarity=0.199 Sum_probs=30.8
Q ss_pred EEEecccCCCC---CHH-HHHHHHhhhcccceEEeeCCCCcEEEEc-CChHHHHHHHHhh
Q psy8931 21 TLVNNLDVYGI---DLK-EFCKLCQHGVAASTCINMVNNAAQVQVQ-GNQIVFVHNLLTE 75 (95)
Q Consensus 21 T~V~Gle~f~i---dl~-~lak~lkk~~acs~sv~~~~g~~eI~iQ-Gd~~~~v~~~L~~ 75 (95)
-+||||+.|+- |+. +++++|.+..-.+..+.. .++-+- +...+.+.+.+.+
T Consensus 26 VLvTGF~PF~g~~~NPS~~~v~~L~~~~i~~~~i~~----~~lPv~y~~~~~~l~~~i~~ 81 (228)
T 4hps_A 26 ILVTAFDPFGGEAINPSWEAIKPLQGSQVFGANIEI----CQIPCIFDTSLEHLYAAVDK 81 (228)
T ss_dssp EEEEEECCCTTCSCCHHHHHHGGGTTCEETTEEEEE----EEECSSTTHHHHHHHHHHHH
T ss_pred EEEEeccCCCCCCCChHHHHHHHhcCcCCCCcEEEE----EEcceEeHHHHHHHHHHHHh
Confidence 38999999965 654 788888875333444443 233332 4455556666655
No 69
>2aiz_P Outer membrane protein P6; alpha-beta sandwich; HET: UDP AMU DGL 6CL DAL; NMR {Haemophilus influenzae} SCOP: d.79.7.1
Probab=24.56 E-value=55 Score=20.75 Aligned_cols=21 Identities=10% Similarity=0.020 Sum_probs=18.0
Q ss_pred HHHHHHHHhhhcCCCcCceEEc
Q psy8931 66 IVFVHNLLTEKFNIQKRFIRGL 87 (95)
Q Consensus 66 ~~~v~~~L~~~~gip~~~I~~~ 87 (95)
...|.+||.+ .|||...|.+.
T Consensus 87 A~aV~~~L~~-~Gi~~~ri~~~ 107 (134)
T 2aiz_P 87 ADAVKGYLAG-KGVDAGKLGTV 107 (134)
T ss_dssp HHHHHHHHHH-TTCCGGGEEEE
T ss_pred HHHHHHHHHH-cCCCHHHEEEE
Confidence 5778999999 79999999875
No 70
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=24.53 E-value=99 Score=17.17 Aligned_cols=78 Identities=6% Similarity=0.071 Sum_probs=40.7
Q ss_pred CCCccEEEEEeeecCCeeEEEEecccCCCCCHHHHHHHHhhhcc-cceEEeeCCCCcEEEEcCChHHHHHHHHhhhcCCC
Q psy8931 2 GKLKPIDLQVATRSGNKKVTLVNNLDVYGIDLKEFCKLCQHGVA-ASTCINMVNNAAQVQVQGNQIVFVHNLLTEKFNIQ 80 (95)
Q Consensus 2 G~~~~I~I~~~~R~g~K~vT~V~Gle~f~idl~~lak~lkk~~a-cs~sv~~~~g~~eI~iQGd~~~~v~~~L~~~~gip 80 (95)
|-+..+.|.+....|+.. ++ -++. .....+|-..+...+. ++..... ..+...|...+. ...|.+ ||+.
T Consensus 1 ~~~~~m~i~vk~~~g~~~-~~--~v~~-~~TV~~lK~~i~~~~~~~gip~~~----qrLi~~Gk~L~D-~~tL~~-~~i~ 70 (85)
T 2wyq_A 1 GIPMAVTITLKTLQQQTF-KI--RMEP-DETVKVLKEKIEAEKGRDAFPVAG----QKLIYAGKILSD-DVPIRD-YRID 70 (85)
T ss_dssp ---CCEEEEEEETTSCEE-EE--EECT-TSBHHHHHHHHHHHHCTTTCCGGG----EEEEETTEECCT-TSBGGG-GCCC
T ss_pred CCCceEEEEEEECCCCEE-EE--EECC-CCCHHHHHHHHHhhccccCCCHHH----eEEEECCEECcC-CCCHHH-cCCC
Confidence 556778898888877544 32 1332 3346666666666543 3332222 566677754432 123444 9986
Q ss_pred cCc-eEEccc
Q psy8931 81 KRF-IRGLEL 89 (95)
Q Consensus 81 ~~~-I~~~~~ 89 (95)
... |.++..
T Consensus 71 ~g~~i~l~~~ 80 (85)
T 2wyq_A 71 EKNFVVVMVT 80 (85)
T ss_dssp TTSEEEEEEC
T ss_pred CCCEEEEEEc
Confidence 654 334433
No 71
>2ftc_G L11MT, MRP-L11, 39S ribosomal protein L11, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_G
Probab=24.32 E-value=1.1e+02 Score=20.34 Aligned_cols=53 Identities=19% Similarity=0.266 Sum_probs=35.4
Q ss_pred ccCCCCCHHHHHHHHhhhccc--ceEEeeCCCCcEEEEcCCh-------HHHHHHHHhhhcCCCcC
Q psy8931 26 LDVYGIDLKEFCKLCQHGVAA--STCINMVNNAAQVQVQGNQ-------IVFVHNLLTEKFNIQKR 82 (95)
Q Consensus 26 le~f~idl~~lak~lkk~~ac--s~sv~~~~g~~eI~iQGd~-------~~~v~~~L~~~~gip~~ 82 (95)
|-.+|+++.+|+++|-.+-+- .+...+ .+|.|+-|- ..-...+|.+..|+++.
T Consensus 27 LG~~Gvni~~fck~fN~~T~~~~~G~~ip----V~Itv~~drsf~f~vk~Ppas~Ll~kaag~~~g 88 (145)
T 2ftc_G 27 LGQRGVSINQFCKEFNERTKDIKEGIPLP----TKILVKPDRTFEIKIGQPTVSYFLKAAAGIEKG 88 (145)
T ss_pred ccccCCCHHHHHHHHHHHHhhhcCCCeEE----EEEEEcCCCeEEEEEcCCCHHHHHHHHhCCCCC
Confidence 566899999999999887543 133333 677777662 34456666666777653
No 72
>1jrm_A MTH0637, conserved hypothetical protein MTH637; alpha-beta protein, structural genomics, OCSP, NESG; NMR {Methanothermobacterthermautotrophicus} SCOP: d.206.1.1
Probab=24.31 E-value=1.3e+02 Score=18.61 Aligned_cols=44 Identities=20% Similarity=0.298 Sum_probs=31.3
Q ss_pred HHHHHHHhhhcccceEEeeCCCC----cEEEEcCChHHHHHHHHhhhcCC
Q psy8931 34 KEFCKLCQHGVAASTCINMVNNA----AQVQVQGNQIVFVHNLLTEKFNI 79 (95)
Q Consensus 34 ~~lak~lkk~~acs~sv~~~~g~----~eI~iQGd~~~~v~~~L~~~~gi 79 (95)
+++.+.|.+.|.+..++. .|. -.|.|.|-..+++.+.|.+..|+
T Consensus 54 ~ali~~LAk~l~s~V~i~--~G~tsR~K~v~I~~~~~~~l~~~L~~~~~~ 101 (104)
T 1jrm_A 54 REIIKEFSETFGRDVEIV--SGQKSRQKTIRIQGMGRDLFLKLVSEKFGL 101 (104)
T ss_dssp HHHHHHHHHHHSSEEEEC--SCGGGSEEEEEEESCCHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHhCCCEEEE--ecCCCCceEEEEcCCCHHHHHHHHHHHhcc
Confidence 678888888888333333 342 78899997778888888875554
No 73
>3pgv_A Haloacid dehalogenase-like hydrolase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: EPE; 2.39A {Klebsiella pneumoniae subsp}
Probab=23.97 E-value=1.7e+02 Score=19.77 Aligned_cols=57 Identities=5% Similarity=-0.072 Sum_probs=36.4
Q ss_pred HHHHHHHHhhhcccceEEeeC-CCCcEEEEcCChHHHHHHHHhhhcCCCcCceEEccc
Q psy8931 33 LKEFCKLCQHGVAASTCINMV-NNAAQVQVQGNQIVFVHNLLTEKFNIQKRFIRGLEL 89 (95)
Q Consensus 33 l~~lak~lkk~~acs~sv~~~-~g~~eI~iQGd~~~~v~~~L~~~~gip~~~I~~~~~ 89 (95)
+..+...|...|.....+.-. +...+|.-.|-..-...+.|.+.+|++.+.+..+.+
T Consensus 176 ~~~~~~~l~~~~~~~~~~~~s~~~~~ei~~~~~~K~~al~~l~~~lgi~~~~~ia~GD 233 (285)
T 3pgv_A 176 LLPLEQAMNARWGDRVNVSFSTLTCLEVMAGGVSKGHALEAVAKMLGYTLSDCIAFGD 233 (285)
T ss_dssp HHHHHHHHHHHHGGGEEEEESSTTEEEEEETTCSHHHHHHHHHHHTTCCGGGEEEEEC
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCceEEEecCCCChHHHHHHHHHHhCCCHHHEEEECC
Confidence 456777787777755544432 222677766665555666666779999887766543
No 74
>1wib_A 60S ribosomal protein L12; N-terminal domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Mus musculus} SCOP: d.47.1.1
Probab=23.80 E-value=84 Score=19.35 Aligned_cols=35 Identities=11% Similarity=0.135 Sum_probs=24.9
Q ss_pred ccCCCCCHHHHHHHHhhhccc-ceEEeeCCCCcEEEEcCCh
Q psy8931 26 LDVYGIDLKEFCKLCQHGVAA-STCINMVNNAAQVQVQGNQ 65 (95)
Q Consensus 26 le~f~idl~~lak~lkk~~ac-s~sv~~~~g~~eI~iQGd~ 65 (95)
|-.+|+++.++++++.++-+- .+...+ .+|.|| |-
T Consensus 38 LG~~Glni~~f~k~fn~~T~~~kG~~ip----V~itv~-dr 73 (92)
T 1wib_A 38 IGPLGLSPKKVGDDIAKATGDWKGLRIT----VKLTIQ-NR 73 (92)
T ss_dssp HTTTCSCHHHHHHHHHHHTTTTTTSEEE----EEEEEE-TT
T ss_pred ccccCCCHHHHHHHHHHHHhhcCCCeEE----EEEEEe-CC
Confidence 556899999999999877532 233333 688888 64
No 75
>2kgw_A Outer membrane protein A; OMPA-L membrane, transmembrane; NMR {Mycobacterium tuberculosis} PDB: 2lca_A 2lbt_A
Probab=23.09 E-value=56 Score=20.30 Aligned_cols=22 Identities=14% Similarity=0.176 Sum_probs=18.2
Q ss_pred hHHHHHHHHhhhcCCCcCceEEc
Q psy8931 65 QIVFVHNLLTEKFNIQKRFIRGL 87 (95)
Q Consensus 65 ~~~~v~~~L~~~~gip~~~I~~~ 87 (95)
-...|.+||.+ +|||...|.+.
T Consensus 80 RA~aV~~~L~~-~Gi~~~ri~~~ 101 (129)
T 2kgw_A 80 RAKIVADYLVA-RGVAGDHIATV 101 (129)
T ss_dssp HHHHHHHHHHH-HTCCGGGEEEE
T ss_pred HHHHHHHHHHH-cCCCHHHEEEE
Confidence 35678999998 79999998874
No 76
>3dhx_A Methionine import ATP-binding protein METN; methionine uptake, regulation, amino-acid transport, ATP-BIN hydrolase, inner membrane, membrane; 2.10A {Escherichia coli} SCOP: d.58.18.13
Probab=22.82 E-value=1.2e+02 Score=18.27 Aligned_cols=28 Identities=11% Similarity=0.200 Sum_probs=21.8
Q ss_pred cEEEEcCC--hHHHHHHHHhhhcCCCcCceE
Q psy8931 57 AQVQVQGN--QIVFVHNLLTEKFNIQKRFIR 85 (95)
Q Consensus 57 ~eI~iQGd--~~~~v~~~L~~~~gip~~~I~ 85 (95)
..|.+.|+ ..+++.+||.+ .|+..+.+.
T Consensus 67 L~v~l~G~~~~~~~ai~~L~~-~~v~vEvl~ 96 (106)
T 3dhx_A 67 MLTEMHGTQQDTQAAIAWLQE-HHVKVEVLG 96 (106)
T ss_dssp EEEEEESCHHHHHHHHHHHHH-TTCEEEEEE
T ss_pred EEEEEeCCHHHHHHHHHHHHH-CCCEEEEee
Confidence 78899998 46788899988 787665554
No 77
>1mio_A Nitrogenase molybdenum iron protein (alpha chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=22.34 E-value=34 Score=26.98 Aligned_cols=66 Identities=12% Similarity=0.227 Sum_probs=40.7
Q ss_pred CCeeEEEEecccCCCCCHHHHHHHHhhh-------cccceEEeeC---CCC-cEEEEcCChHHHHHHHHhhhcCCCcC
Q psy8931 16 GNKKVTLVNNLDVYGIDLKEFCKLCQHG-------VAASTCINMV---NNA-AQVQVQGNQIVFVHNLLTEKFNIQKR 82 (95)
Q Consensus 16 g~K~vT~V~Gle~f~idl~~lak~lkk~-------~acs~sv~~~---~g~-~eI~iQGd~~~~v~~~L~~~~gip~~ 82 (95)
.+..|.++-++.. .-|+.++.+.|... +..++++.+. +.+ .-|.++......++++|.++||+|--
T Consensus 205 ~~~~VNIlG~~~~-~gD~~eikrlL~~~Gi~v~~~~~gg~t~~ei~~~~~A~~niv~~~~~~~~~A~~Leer~GiP~i 281 (533)
T 1mio_A 205 KKYSINVLGEYNI-GGDAWEMDRVLEKIGYHVNATLTGDATYEKVQNADKADLNLVQCHRSINYIAEMMETKYGIPWI 281 (533)
T ss_dssp CTTEEEEEEECCB-TSHHHHHHHHHHHHTCEEEEEEETTCCHHHHHBTTSCSEEEESCHHHHHHHHHHHHHHHCCCEE
T ss_pred CCCeEEEEcCCCC-hhhHHHHHHHHHHCCCeEEEEeCCCCCHHHHHhhhcCCEEEEECHHHHHHHHHHHHHHhCCCeE
Confidence 3567888877543 55777776666652 2223333331 222 34444445678899999999999853
No 78
>2nlv_A XISI protein-like; XISI-like protein, structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.30A {Anabaena variabilis} SCOP: d.326.1.1
Probab=22.29 E-value=49 Score=21.21 Aligned_cols=29 Identities=14% Similarity=0.004 Sum_probs=23.0
Q ss_pred cEEEEcCChHH-HHHHHHhhhcCCCcCceEE
Q psy8931 57 AQVQVQGNQIV-FVHNLLTEKFNIQKRFIRG 86 (95)
Q Consensus 57 ~eI~iQGd~~~-~v~~~L~~~~gip~~~I~~ 86 (95)
+-|=||=|..+ -|++-|++ .|||++.|..
T Consensus 67 ~KIWIq~d~TE~gIa~eLv~-~GVpk~dIVL 96 (112)
T 2nlv_A 67 GKIWLQQNLTDRNPAEELVM-MGVPREDIVL 96 (112)
T ss_dssp TEEEEEEECSSSCHHHHHHH-TTCCGGGEEE
T ss_pred CeEEEEeCCccccHHHHHHH-cCCCHHHEEE
Confidence 56778877554 57888888 9999999975
No 79
>3s06_A Motility protein B; peptidoglycan binding, flagellar rotation, chemotaxis, bacte flagellar motor, membrane, motor protein; 1.80A {Helicobacter pylori} PDB: 3s03_A 3s0h_A 3s02_A
Probab=21.88 E-value=64 Score=20.98 Aligned_cols=22 Identities=9% Similarity=0.122 Sum_probs=18.4
Q ss_pred hHHHHHHHHhhhcCCCcCceEEc
Q psy8931 65 QIVFVHNLLTEKFNIQKRFIRGL 87 (95)
Q Consensus 65 ~~~~v~~~L~~~~gip~~~I~~~ 87 (95)
-+..|.+||.+ +|+|...|.+.
T Consensus 93 RA~aV~~~L~~-~Gv~~~ri~~~ 114 (166)
T 3s06_A 93 RAYRVMKVLIQ-YGVNPNQLSFS 114 (166)
T ss_dssp HHHHHHHHHHH-TTCCGGGEEEE
T ss_pred HHHHHHHHHHH-cCCChHhEEEE
Confidence 45779999998 89999988764
No 80
>3pdi_B Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=21.84 E-value=57 Score=25.01 Aligned_cols=65 Identities=12% Similarity=0.177 Sum_probs=40.9
Q ss_pred CCeeEEEEecccCCCCCHHHHHHHHhhhcccc---------------------------eEEeeC---CCC-cEEEEcCC
Q psy8931 16 GNKKVTLVNNLDVYGIDLKEFCKLCQHGVAAS---------------------------TCINMV---NNA-AQVQVQGN 64 (95)
Q Consensus 16 g~K~vT~V~Gle~f~idl~~lak~lkk~~acs---------------------------~sv~~~---~g~-~eI~iQGd 64 (95)
.+..|.++.|...+.-|+.++-+.|.. ++-- +++.+. +.+ .-|.++.
T Consensus 168 ~~~~VNii~G~~~~~~D~~eik~lL~~-~Gi~v~~~~d~s~~ld~~~~~~~~~~~~~gg~~~~ei~~~~~A~~ni~~~~- 245 (458)
T 3pdi_B 168 RPRQVNVLCSANLTPGDLEYIAESIES-FGLRPLLIPDLSGSLDGHLDENRFNALTTGGLSVAELATAGQSVATLVVGQ- 245 (458)
T ss_dssp CSSEEEEEECTTCCHHHHHHHHHHHHT-TTCEEEEESCHHHHSSSCCCSSCCTTCCSCSBCHHHHGGGSSCSCEEEESG-
T ss_pred CCCeEEEEeCCCCChHHHHHHHHHHHH-cCCEEEEecCccccccCccccccccccCCCCCCHHHHHhhhhCcEEEEecH-
Confidence 457899998875445567777666653 2322 233321 112 5666654
Q ss_pred hHHHHHHHHhhhcCCCcC
Q psy8931 65 QIVFVHNLLTEKFNIQKR 82 (95)
Q Consensus 65 ~~~~v~~~L~~~~gip~~ 82 (95)
.....+++|.++||+|--
T Consensus 246 ~~~~~A~~Le~~~GiP~~ 263 (458)
T 3pdi_B 246 SLAGAADALAERTGVPDR 263 (458)
T ss_dssp GGHHHHHHHHHHSCCCEE
T ss_pred HHHHHHHHHHHHHCCCEE
Confidence 456799999999999954
No 81
>3d7q_A XISI protein-like; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.30A {Nostoc punctiforme pcc 73102}
Probab=21.59 E-value=49 Score=21.21 Aligned_cols=29 Identities=24% Similarity=0.132 Sum_probs=22.8
Q ss_pred cEEEEcCChHH-HHHHHHhhhcCCCcCceEE
Q psy8931 57 AQVQVQGNQIV-FVHNLLTEKFNIQKRFIRG 86 (95)
Q Consensus 57 ~eI~iQGd~~~-~v~~~L~~~~gip~~~I~~ 86 (95)
+-|=||=|..+ -|++-|++ .|||++.|..
T Consensus 67 ~KIWIq~d~TE~gIa~eLv~-~GVpk~dIVL 96 (112)
T 3d7q_A 67 NKIWIQQNTTEADIALELME-MGIDKQDIVI 96 (112)
T ss_dssp TEEEEEEECSSCCHHHHHHT-TTCCGGGEEE
T ss_pred CeEEEEeCCccccHHHHHHH-cCCCHHHEEE
Confidence 56778877544 57888888 9999999975
No 82
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.41 E-value=1.2e+02 Score=18.69 Aligned_cols=36 Identities=14% Similarity=0.023 Sum_probs=28.6
Q ss_pred EEEEecccCCCCCHHHHHHHHhhhcccc-eEEeeCCCC
Q psy8931 20 VTLVNNLDVYGIDLKEFCKLCQHGVAAS-TCINMVNNA 56 (95)
Q Consensus 20 vT~V~Gle~f~idl~~lak~lkk~~acs-~sv~~~~g~ 56 (95)
.-.|.||+ |.++.++|-+.|...|+-= |.|.+..+.
T Consensus 11 ~lYV~NL~-~~~~~~~lk~~L~~lF~~yGG~Vl~VtgG 47 (96)
T 2diu_A 11 LLYVYNLP-ANKDGKSVSNRLRRLSDNCGGKVLSITGC 47 (96)
T ss_dssp EEEEESCC-TTSCHHHHHHHHHHHHHTTTCCEEECCTT
T ss_pred EEEEeCCC-CcCCHHHHHHHHHHHHHHcCCeeEEEecC
Confidence 33499999 6999999999999998755 688876554
No 83
>2b30_A Pvivax hypothetical protein; SGPP, structural genomics, PSI, protein structure initiative; 2.70A {Plasmodium vivax} SCOP: c.108.1.10
Probab=21.38 E-value=2.1e+02 Score=19.85 Aligned_cols=58 Identities=17% Similarity=0.094 Sum_probs=37.3
Q ss_pred CHHHHHHHHhhhcccceEEeeC-CCCcEEEEcCChHHHHHHHHhhhcCCCcCceEEccc
Q psy8931 32 DLKEFCKLCQHGVAASTCINMV-NNAAQVQVQGNQIVFVHNLLTEKFNIQKRFIRGLEL 89 (95)
Q Consensus 32 dl~~lak~lkk~~acs~sv~~~-~g~~eI~iQGd~~~~v~~~L~~~~gip~~~I~~~~~ 89 (95)
.++++...|...+.-..++... +...||.-.|-......+.|.+.+|++.+.+..+.+
T Consensus 190 ~~~~~~~~l~~~~~~~~~~~~s~~~~lei~~~~~~K~~~l~~l~~~~~~~~~~~~~~GD 248 (301)
T 2b30_A 190 ESKTVIGNLKQKFKNKLTIFTTYNGHAEVTKLGHDKYTGINYLLKHYNISNDQVLVVGD 248 (301)
T ss_dssp THHHHHHHHHHHSTTTEEEEECTTSCEEEEETTCCHHHHHHHHHHHTTCCGGGEEEEEC
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCcceEecCCCCCcHHHHHHHHHHcCCCHHHEEEECC
Confidence 4677888887766544444432 223677777765555666666669998877766543
No 84
>2nwv_A XISI protein-like; YP_323822.1, structural genomics, PSI-2, structure initiative, joint center for structural genomics; 1.85A {Anabaena variabilis} SCOP: d.326.1.1
Probab=21.30 E-value=52 Score=21.14 Aligned_cols=29 Identities=7% Similarity=0.039 Sum_probs=22.9
Q ss_pred cEEEEcCChHH-HHHHHHhhhcCCCcCceEE
Q psy8931 57 AQVQVQGNQIV-FVHNLLTEKFNIQKRFIRG 86 (95)
Q Consensus 57 ~eI~iQGd~~~-~v~~~L~~~~gip~~~I~~ 86 (95)
+-|=||=|..+ -|++-|++ .|||++.|..
T Consensus 69 ~KIWIq~d~TE~gIa~eLv~-~GVpk~dIVL 98 (114)
T 2nwv_A 69 EKIYIEEDYTEEGIATELMR-LGVTNNDIVL 98 (114)
T ss_dssp TEEEEEEECCSSCHHHHHHH-TTCCGGGEEE
T ss_pred CeEEEEeCCccccHHHHHHH-cCCCHHHEEE
Confidence 56778877544 57888888 9999999975
No 85
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=21.22 E-value=91 Score=18.30 Aligned_cols=67 Identities=6% Similarity=0.111 Sum_probs=37.2
Q ss_pred EEEEecccCCCCCHHHHHHHHhhhcccceEEeeCCCC---c--EEEEcCC----------hHHHHHHHHhhhcCCCcCce
Q psy8931 20 VTLVNNLDVYGIDLKEFCKLCQHGVAASTCINMVNNA---A--QVQVQGN----------QIVFVHNLLTEKFNIQKRFI 84 (95)
Q Consensus 20 vT~V~Gle~f~idl~~lak~lkk~~acs~sv~~~~g~---~--eI~iQGd----------~~~~v~~~L~~~~gip~~~I 84 (95)
+-+|.|..-|.-|.+++....-....|.+...+.++. . .|.+... ....+.+.|.+.+|+|.. |
T Consensus 6 mIiv~G~nv~P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~~~~~~~~~~~~~l~~~i~~~l~~~~gv~~~-v 84 (109)
T 3lax_A 6 MIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLFTDDYGRLQALTREITRQLKDEILVTPR-V 84 (109)
T ss_dssp CEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHHHHHHSSCCE-E
T ss_pred EEEECCEEECHHHHHHHHHhCCCcccceEEEEeccccceeEEEEEEEeeccccccchhhhhHHHHHHHHHHHhCCccc-e
Confidence 3567788878777887776665544444333333332 2 2222211 234556666667899875 5
Q ss_pred EEc
Q psy8931 85 RGL 87 (95)
Q Consensus 85 ~~~ 87 (95)
.++
T Consensus 85 ~~v 87 (109)
T 3lax_A 85 KLV 87 (109)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 86
>3cyp_B Chemotaxis protein MOTB; bacterial flagellar motor, peptidoglycan binding, bacterial flagellum, flagellar rotation, inner membrane, membrane; 1.60A {Helicobacter pylori} PDB: 3cyq_B* 3imp_B
Probab=20.92 E-value=71 Score=20.17 Aligned_cols=22 Identities=9% Similarity=0.122 Sum_probs=18.1
Q ss_pred hHHHHHHHHhhhcCCCcCceEEc
Q psy8931 65 QIVFVHNLLTEKFNIQKRFIRGL 87 (95)
Q Consensus 65 ~~~~v~~~L~~~~gip~~~I~~~ 87 (95)
-+..|.+||.+ .|||...|.+.
T Consensus 65 RA~aV~~~L~~-~Gv~~~ri~~~ 86 (138)
T 3cyp_B 65 RAYRVMKVLIQ-YGVNPNQLSFS 86 (138)
T ss_dssp HHHHHHHHHHH-TTCCGGGEEEE
T ss_pred HHHHHHHHHHH-cCCCHHHEEEE
Confidence 45679999999 59999988764
No 87
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=20.85 E-value=77 Score=23.21 Aligned_cols=60 Identities=20% Similarity=0.225 Sum_probs=40.6
Q ss_pred eecCCeeEEEEecccCCCCCHHHHHHHHhhhcccceEEeeCCCCcEEEEcCChHHHHHHHHhhhcCCCcC
Q psy8931 13 TRSGNKKVTLVNNLDVYGIDLKEFCKLCQHGVAASTCINMVNNAAQVQVQGNQIVFVHNLLTEKFNIQKR 82 (95)
Q Consensus 13 ~R~g~K~vT~V~Gle~f~idl~~lak~lkk~~acs~sv~~~~g~~eI~iQGd~~~~v~~~L~~~~gip~~ 82 (95)
++++.+.|.+|.|-..-.+.+..+.++|++. . .+. ..+.+-|.|.+...++|. .+|+.++
T Consensus 21 ~~~~m~ki~~v~Gtr~~~~~~a~li~~l~~~---~-~~~-----~~~~~tG~h~~~~~~~~~-~~~i~~~ 80 (396)
T 3dzc_A 21 QSNAMKKVLIVFGTRPEAIKMAPLVQQLCQD---N-RFV-----AKVCVTGQHREMLDQVLE-LFSITPD 80 (396)
T ss_dssp ---CCEEEEEEECSHHHHHHHHHHHHHHHHC---T-TEE-----EEEEECCSSSHHHHHHHH-HTTCCCS
T ss_pred HhCCCCeEEEEEeccHhHHHHHHHHHHHHhC---C-CCc-----EEEEEecccHHHHHHHHH-hcCCCCc
Confidence 4455578999999876556778889999864 1 122 467888888876777775 4998443
No 88
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=20.60 E-value=53 Score=20.07 Aligned_cols=45 Identities=2% Similarity=0.072 Sum_probs=24.4
Q ss_pred HHHhhhcccc-eEEeeCCCCcEEEEcCChH---HHHHHH---HhhhcCCCcCce
Q psy8931 38 KLCQHGVAAS-TCINMVNNAAQVQVQGNQI---VFVHNL---LTEKFNIQKRFI 84 (95)
Q Consensus 38 k~lkk~~acs-~sv~~~~g~~eI~iQGd~~---~~v~~~---L~~~~gip~~~I 84 (95)
+.++..+++. -.+.+ ..+.|.|-|.-. +...++ +++.|.+|..++
T Consensus 38 k~I~e~tGv~~IdI~e--ddG~V~I~g~~~ea~~~A~~~I~~ie~~~~vp~~~~ 89 (91)
T 2cpq_A 38 QQARKVPGVTAIELDE--DTGTFRIYGESADAVKKARGFLEFVEDFIQVPSGPS 89 (91)
T ss_dssp HHHHTSTTEEEEEEET--TTTEEEEEESSHHHHHHHHHHHSCCCCCCCCCSSCC
T ss_pred HHHHHHhCCeEEEEEc--CCCEEEEEECCHHHHHHHHHHHHhhheEEecChhhc
Confidence 3444554443 34432 226788888322 233333 355689998876
No 89
>2dsm_A Hypothetical protein YQAI; homodimer, domain swapped dimer, inter-domain beta sheet, structural genomics, PSI-2, protein structure initiative; NMR {Bacillus subtilis} SCOP: d.372.1.1
Probab=20.58 E-value=33 Score=20.43 Aligned_cols=37 Identities=14% Similarity=0.084 Sum_probs=23.7
Q ss_pred ccceEEeeCCCCcEEEEcCC--hHHHHHHHHhhhcCCCcCc
Q psy8931 45 AASTCINMVNNAAQVQVQGN--QIVFVHNLLTEKFNIQKRF 83 (95)
Q Consensus 45 acs~sv~~~~g~~eI~iQGd--~~~~v~~~L~~~~gip~~~ 83 (95)
.||+-+.+..+ -+.--|+ +.+.+.+||.+.+|+..+.
T Consensus 24 ~cG~EI~~gd~--yl~f~GeiIl~eNl~~Yl~e~~g~~~k~ 62 (72)
T 2dsm_A 24 FYGDEVTPVDD--YVIDGGEIILRENLERYLREQLGFEFKN 62 (72)
T ss_dssp TTSSCBCTTSC--EEEETTEEEEHHHHHHHHHHTCCCEECC
T ss_pred ccCCeeecCCe--EEEECCeeehHHHHHHHHHHHhCcEeec
Confidence 67766664322 3333344 4566999999999987654
No 90
>3lac_A Pyrrolidone-carboxylate peptidase; alpha beta class, three layer sandwich, hydrolase, protease, thiol protease, structural genomics; 2.00A {Bacillus anthracis}
Probab=20.53 E-value=1.4e+02 Score=20.67 Aligned_cols=50 Identities=20% Similarity=0.228 Sum_probs=29.8
Q ss_pred EEecccCCCC---CHH-HHHHHHhhhcccceEEeeCCCCcEEEEc-CChHHHHHHHHhh
Q psy8931 22 LVNNLDVYGI---DLK-EFCKLCQHGVAASTCINMVNNAAQVQVQ-GNQIVFVHNLLTE 75 (95)
Q Consensus 22 ~V~Gle~f~i---dl~-~lak~lkk~~acs~sv~~~~g~~eI~iQ-Gd~~~~v~~~L~~ 75 (95)
+||||+.|+- |+. +++++|.+.++....+.. .++-+- ++..+.+.+++.+
T Consensus 5 LvTGF~PF~~~~~NPS~~~v~~L~~~i~~~~~i~~----~~lPv~y~~~~~~l~~~~~~ 59 (215)
T 3lac_A 5 LLTGFDPFGGESINPAWEVAKSLHEKTIGEYKIIS----KQVPTVFHKSISVLKEYIEE 59 (215)
T ss_dssp EEEEECCCTTCSCCHHHHHHHTTTTCEETTEEEEE----EEECSSTTHHHHHHHHHHHH
T ss_pred EEEecCCCCCCCCChHHHHHHHhccccCCCcEEEE----EEEeeEhHHHHHHHHHHHHh
Confidence 8999999964 654 788888885432213332 233332 4455566666654
No 91
>1nf2_A Phosphatase; structural proteomics, HAD NEW fold, structural genomics, BSGC structure funded by NIH structure initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.108.1.10
Probab=20.43 E-value=2e+02 Score=19.28 Aligned_cols=57 Identities=12% Similarity=0.029 Sum_probs=31.9
Q ss_pred HHHHHHHHhhhcccceEEee-CCCCcEEEEcCChHHHHHHHHhhhcCCCcCceEEccc
Q psy8931 33 LKEFCKLCQHGVAASTCINM-VNNAAQVQVQGNQIVFVHNLLTEKFNIQKRFIRGLEL 89 (95)
Q Consensus 33 l~~lak~lkk~~acs~sv~~-~~g~~eI~iQGd~~~~v~~~L~~~~gip~~~I~~~~~ 89 (95)
+.++.+.|...+.-..++.. .+...+|.-.|-........|.+.+|++.+.+..+.+
T Consensus 157 ~~~~~~~l~~~~~~~~~~~~s~~~~~ei~~~~~~K~~~~~~~~~~~~~~~~~~~~~GD 214 (268)
T 1nf2_A 157 LDELKEILSERFKDVVKVFKSFPTYLEIVPKNVDKGKALRFLRERMNWKKEEIVVFGD 214 (268)
T ss_dssp HHHHHHHHHHHHTTTSEEEEEETTEEEEECTTCCHHHHHHHHHHHHTCCGGGEEEEEC
T ss_pred HHHHHHHHHHHhcCCEEEEEecCceEEEeCCCCChHHHHHHHHHHcCCCHHHeEEEcC
Confidence 34455566555533333332 1222566666655555666666779998877766543
No 92
>4dw8_A Haloacid dehalogenase-like hydrolase; HAD, putative phosphatase, enzyme function initiative, EFI, structural genomics; 1.50A {Bacteroides thetaiotaomicron} PDB: 3niw_A 4dwo_A
Probab=20.11 E-value=2e+02 Score=19.09 Aligned_cols=57 Identities=9% Similarity=-0.021 Sum_probs=34.4
Q ss_pred HHHHHHHHhhhcccceEEee-CCCCcEEEEcCChHHHHHHHHhhhcCCCcCceEEccc
Q psy8931 33 LKEFCKLCQHGVAASTCINM-VNNAAQVQVQGNQIVFVHNLLTEKFNIQKRFIRGLEL 89 (95)
Q Consensus 33 l~~lak~lkk~~acs~sv~~-~~g~~eI~iQGd~~~~v~~~L~~~~gip~~~I~~~~~ 89 (95)
++.+...|...+....++.. .+...+|.-.|-......+.|.+.+|++.+.+..+.+
T Consensus 164 ~~~~~~~l~~~~~~~~~~~~s~~~~~ei~~~~~~K~~~l~~l~~~lgi~~~~~i~~GD 221 (279)
T 4dw8_A 164 LIPVESELCIRLQGKINVFRSEPYFLELVPQGIDKALSLSVLLENIGMTREEVIAIGD 221 (279)
T ss_dssp HHHHHHHHHHHTTTTCEEEEEETTEEEEECTTCCHHHHHHHHHHHHTCCGGGEEEEEC
T ss_pred HHHHHHHHHHHhcCCEEEEEcCCcEEEEecCCCChHHHHHHHHHHcCCCHHHEEEECC
Confidence 45566777766654333332 2222566666655566666677779999887766544
No 93
>3cjs_B 50S ribosomal protein L11, ribosomal protein L11 methyltransferase; S-adenosyl-L-methionine dependent methyltransferase; 1.37A {Thermus thermophilus} SCOP: d.47.1.1 PDB: 3cju_B* 2bcw_A
Probab=20.03 E-value=1.2e+02 Score=17.69 Aligned_cols=36 Identities=19% Similarity=0.325 Sum_probs=24.6
Q ss_pred ccCCCCCHHHHHHHHhhhccc-ceEEeeCCCCcEEEEcCCh
Q psy8931 26 LDVYGIDLKEFCKLCQHGVAA-STCINMVNNAAQVQVQGNQ 65 (95)
Q Consensus 26 le~f~idl~~lak~lkk~~ac-s~sv~~~~g~~eI~iQGd~ 65 (95)
|-.+|+++.++++++-.+-+- .+...+ .+|.|+-|-
T Consensus 27 LG~~Gvni~~f~k~fN~~T~~~~G~~ip----V~Itv~~dr 63 (72)
T 3cjs_B 27 LGQHGANIMEFVKAFNAATANMGDAIVP----VEITIYADR 63 (72)
T ss_dssp HHTTTCCHHHHHHHHHHHHGGGCSCEEE----EEEEEETTS
T ss_pred hcccCCCHHHHHHHHHHHHhhcCCCeEe----EEEEEeCCC
Confidence 456799999999999876542 243334 677777553
Done!