RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8931
         (95 letters)



>d1d1ra_ d.64.1.1 (A:) YciH {Escherichia coli [TaxId: 562]}
          Length = 83

 Score = 42.7 bits (101), Expect = 1e-07
 Identities = 13/73 (17%), Positives = 30/73 (41%), Gaps = 5/73 (6%)

Query: 16 GNKKVTLVNNLDVYGIDLKEFCKLCQHGVAASTCINMVNNAAQVQVQGNQIVFVHNLLTE 75
            K V L+  +D+   +L +     +        +        +++QG++   + +LL  
Sbjct: 16 KGKGVCLITGVDLDDAELTKLAAELKKKCGCGGAV----KDGVIEIQGDKRDLLKSLLEA 71

Query: 76 KFNIQKRFIRGLE 88
          K  ++ +   GLE
Sbjct: 72 K-GMKVKLAGGLE 83


>d2if1a_ d.64.1.1 (A:) Eukaryotic translation initiation factor
           eIF-1 (SUI1) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 126

 Score = 41.8 bits (98), Expect = 9e-07
 Identities = 17/85 (20%), Positives = 34/85 (40%), Gaps = 2/85 (2%)

Query: 2   GKLKPIDLQVATRSGNKKVTLVNNLDVYGIDLKEFCKLCQHGVAASTCI-NMVNNAAQVQ 60
           G    I +++  R+G K +T V  +     D K+  K  +   A +  +         +Q
Sbjct: 39  GTEDYIHIRIQQRNGRKTLTTVQGIA-DDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQ 97

Query: 61  VQGNQIVFVHNLLTEKFNIQKRFIR 85
           +QG+Q   +   L E    +   ++
Sbjct: 98  LQGDQRKNICQFLVEIGLAKDDQLK 122


>d2a3la1 c.1.9.1 (A:212-839) AMP deaminase (AMPD), catalytic domain
           {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 628

 Score = 24.9 bits (54), Expect = 1.7
 Identities = 6/27 (22%), Positives = 10/27 (37%)

Query: 23  VNNLDVYGIDLKEFCKLCQHGVAASTC 49
           V +   +  DL    K+   G   + C
Sbjct: 111 VADATAFFTDLHHVLKVIAAGNIRTLC 137


>d1bgfa_ a.90.1.1 (A:) Transcription factor STAT-4 N-domain {Mouse
          (Mus musculus) [TaxId: 10090]}
          Length = 124

 Score = 23.6 bits (51), Expect = 3.4
 Identities = 5/34 (14%), Positives = 15/34 (44%)

Query: 50 INMVNNAAQVQVQGNQIVFVHNLLTEKFNIQKRF 83
          +  ++       +   ++ +HNL   +  +Q +F
Sbjct: 62 LIQLDEQLGRVSKEKNLLLIHNLKRIRKVLQGKF 95


>d1clia1 d.79.4.1 (A:5-170) Aminoimidazole ribonucleotide synthetase
           (PurM) N-terminal domain {Escherichia coli [TaxId: 562]}
          Length = 166

 Score = 23.7 bits (51), Expect = 4.0
 Identities = 11/78 (14%), Positives = 22/78 (28%), Gaps = 5/78 (6%)

Query: 18  KKVTLVNNLDVYGIDLKEFCKLCQHGVAASTCINMVNN-----AAQVQVQGNQIVFVHNL 72
           ++  LV+  D  G  L+    L +H       + M  N      A+     +        
Sbjct: 52  REPVLVSGTDGVGTKLRLAMDLKRHDTIGIDLVAMCVNDLVVQGAEPLFFLDYYATGKLD 111

Query: 73  LTEKFNIQKRFIRGLELA 90
           +     +      G   +
Sbjct: 112 VDTASAVISGIAEGCLQS 129


>d2qiya1 d.17.4.2 (A:3-141) UBP3-associated protein BRE5 {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 139

 Score = 23.5 bits (50), Expect = 4.6
 Identities = 3/47 (6%), Positives = 14/47 (29%)

Query: 48  TCINMVNNAAQVQVQGNQIVFVHNLLTEKFNIQKRFIRGLELAPKKK 94
             ++ ++      +  + ++     +        +F +   L P   
Sbjct: 79  LKLDTIDFQYTGHLHKSILIMATGEMFWTGTPVYKFCQTFILLPSSN 125


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.136    0.392 

Gapped
Lambda     K      H
   0.267   0.0535    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 325,838
Number of extensions: 12169
Number of successful extensions: 43
Number of sequences better than 10.0: 1
Number of HSP's gapped: 41
Number of HSP's successfully gapped: 10
Length of query: 95
Length of database: 2,407,596
Length adjustment: 58
Effective length of query: 37
Effective length of database: 1,611,256
Effective search space: 59616472
Effective search space used: 59616472
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.3 bits)