BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8934
(129 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2EBZ|A Chain A, Solution Structure Of The Rgs Domain From Human Regulator
Of G-Protein Signaling 12 (Rgs12)
Length = 155
Score = 31.2 bits (69), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 84 GFSRLLNNPLLQTYLPNSTKKIEFHQELLVLFWKMCDYNKH 124
F RLL +P+ Y + +K EF +E +LFW+ C+Y H
Sbjct: 18 SFERLLQDPVGVRYFSDFLRK-EFSEEN-ILFWQACEYFNH 56
>pdb|1ZLX|A Chain A, The Apo Structure Of Human Glycinamide Ribonucleotide
Transformylase
Length = 203
Score = 30.4 bits (67), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 19/99 (19%)
Query: 33 SNKKFNSRKKMDYILNCTLSFGGLKLGTQDNL---FIN---YLSRIHRDEDFQFVL---- 82
S ++ NS ++D +++ + GL + + IN Y +R+ D VL
Sbjct: 20 STREPNSSAQIDIVISNKAAVAGLDKAERAGIPTRVINHKLYKNRVEFDSAIDLVLEEFS 79
Query: 83 ------AGFSRLLNNPLLQTYLPNSTKKIEFHQELLVLF 115
AGF R+L+ P +Q + + K + H LL F
Sbjct: 80 IDIVCLAGFXRILSGPFVQKW---NGKXLNIHPSLLPSF 115
>pdb|1ZLY|A Chain A, The Structure Of Human Glycinamide Ribonucleotide
Transformylase In Complex With Alpha,beta-n-
(hydroxyacetyl)-d-ribofuranosylamine And 10-formyl-5,8,
Dideazafolate
Length = 203
Score = 29.6 bits (65), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 19/99 (19%)
Query: 33 SNKKFNSRKKMDYILNCTLSFGGLKLGTQDNL---FIN---YLSRIHRDEDFQFVL---- 82
S ++ NS ++D +++ + GL + + IN Y +R+ D VL
Sbjct: 20 STREPNSSAQIDIVISNKAAVAGLDKAERAGIPTRVINHKLYKNRVEFDSAIDLVLEEFS 79
Query: 83 ------AGFSRLLNNPLLQTYLPNSTKKIEFHQELLVLF 115
AGF R+L+ P +Q + + K + H LL F
Sbjct: 80 IDIVCLAGFMRILSGPFVQKW---NGKMLNIHPSLLPSF 115
>pdb|1MEO|A Chain A, Human Glycinamide Ribonucleotide Transformylase At Ph 4.2
pdb|1NJS|A Chain A, Human Gar Tfase In Complex With Hydrolyzed Form Of 10-
Trifluoroacetyl-5,10-Dideaza-Acyclic-5,6,7,8-
Tetrahydrofolic Acid
pdb|1NJS|B Chain B, Human Gar Tfase In Complex With Hydrolyzed Form Of 10-
Trifluoroacetyl-5,10-Dideaza-Acyclic-5,6,7,8-
Tetrahydrofolic Acid
pdb|1RBM|A Chain A, Human Gar Tfase Complex Structure With Polyglutamated 10-
(Trifluoroacetyl)-5,10-Dideazaacyclic-5,6,7,8-
Tetrahydrofolic Acid
pdb|1RBM|B Chain B, Human Gar Tfase Complex Structure With Polyglutamated 10-
(Trifluoroacetyl)-5,10-Dideazaacyclic-5,6,7,8-
Tetrahydrofolic Acid
pdb|1RBQ|A Chain A, Human Gar Tfase Complex Structure With
10-(Trifluoroacetyl)-
5,10-Dideazaacyclic-5,6,7,8-Tetrahydrofolic Acid
pdb|1RBQ|B Chain B, Human Gar Tfase Complex Structure With
10-(Trifluoroacetyl)-
5,10-Dideazaacyclic-5,6,7,8-Tetrahydrofolic Acid
pdb|1RBQ|C Chain C, Human Gar Tfase Complex Structure With
10-(Trifluoroacetyl)-
5,10-Dideazaacyclic-5,6,7,8-Tetrahydrofolic Acid
pdb|1RBQ|D Chain D, Human Gar Tfase Complex Structure With
10-(Trifluoroacetyl)-
5,10-Dideazaacyclic-5,6,7,8-Tetrahydrofolic Acid
pdb|1RBY|A Chain A, Human Gar Tfase Complex Structure With
10-(trifluoroacetyl)-
5,10-dideazaacyclic-5,6,7,8-tetrahydrofolic Acid And
Substrate Beta-gar
pdb|1RBY|B Chain B, Human Gar Tfase Complex Structure With
10-(trifluoroacetyl)-
5,10-dideazaacyclic-5,6,7,8-tetrahydrofolic Acid And
Substrate Beta-gar
pdb|1RBY|C Chain C, Human Gar Tfase Complex Structure With
10-(trifluoroacetyl)-
5,10-dideazaacyclic-5,6,7,8-tetrahydrofolic Acid And
Substrate Beta-gar
pdb|1RBY|D Chain D, Human Gar Tfase Complex Structure With
10-(trifluoroacetyl)-
5,10-dideazaacyclic-5,6,7,8-tetrahydrofolic Acid And
Substrate Beta-gar
pdb|1RBZ|A Chain A, Human Gar Tfase Complex Structure With Polyglutamated 10-
(Trifluoroacetyl)-5,10-Dideazaacyclic-5,6,7,8-
Tetrahydrofolic Acid
pdb|1RBZ|B Chain B, Human Gar Tfase Complex Structure With Polyglutamated 10-
(Trifluoroacetyl)-5,10-Dideazaacyclic-5,6,7,8-
Tetrahydrofolic Acid
pdb|1RC0|A Chain A, Human Gar Tfase Complex Structure With Polyglutamated 10-
(trifluoroacetyl)-5,10-dideazaacyclic-5,6,7,8-
Tetrahydrofolic Acid
pdb|1RC0|B Chain B, Human Gar Tfase Complex Structure With Polyglutamated 10-
(trifluoroacetyl)-5,10-dideazaacyclic-5,6,7,8-
Tetrahydrofolic Acid
pdb|1RC1|A Chain A, Human Gar Tfase Complex Structure With Polyglutamated 10-
(Trifluoroacetyl)-5,10-Dideazaacyclic-5,6,7,8-
Tetrahydrofolic Acid
pdb|1RC1|B Chain B, Human Gar Tfase Complex Structure With Polyglutamated 10-
(Trifluoroacetyl)-5,10-Dideazaacyclic-5,6,7,8-
Tetrahydrofolic Acid
Length = 209
Score = 29.6 bits (65), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 19/99 (19%)
Query: 33 SNKKFNSRKKMDYILNCTLSFGGLKLGTQDNL---FIN---YLSRIHRDEDFQFVL---- 82
S ++ NS ++D +++ + GL + + IN Y +R+ D VL
Sbjct: 20 STREPNSSAQIDIVISNKAAVAGLDKAERAGIPTRVINHKLYKNRVEFDSAIDLVLEEFS 79
Query: 83 ------AGFSRLLNNPLLQTYLPNSTKKIEFHQELLVLF 115
AGF R+L+ P +Q + + K + H LL F
Sbjct: 80 IDIVCLAGFMRILSGPFVQKW---NGKMLNIHPSLLPSF 115
>pdb|1MEJ|B Chain B, Human Glycinamide Ribonucleotide Transformylase Domain At
Ph 8.5
pdb|1MEJ|A Chain A, Human Glycinamide Ribonucleotide Transformylase Domain At
Ph 8.5
pdb|1MEJ|C Chain C, Human Glycinamide Ribonucleotide Transformylase Domain At
Ph 8.5
pdb|1MEN|A Chain A, Complex Structure Of Human Gar Tfase And Substrate
Beta-Gar
pdb|1MEN|B Chain B, Complex Structure Of Human Gar Tfase And Substrate
Beta-Gar
pdb|1MEN|C Chain C, Complex Structure Of Human Gar Tfase And Substrate
Beta-Gar
Length = 223
Score = 29.6 bits (65), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 19/99 (19%)
Query: 33 SNKKFNSRKKMDYILNCTLSFGGLKLGTQDNL---FIN---YLSRIHRDEDFQFVL---- 82
S ++ NS ++D +++ + GL + + IN Y +R+ D VL
Sbjct: 31 STREPNSSAQIDIVISNKAAVAGLDKAERAGIPTRVINHKLYKNRVEFDSAIDLVLEEFS 90
Query: 83 ------AGFSRLLNNPLLQTYLPNSTKKIEFHQELLVLF 115
AGF R+L+ P +Q + + K + H LL F
Sbjct: 91 IDIVCLAGFMRILSGPFVQKW---NGKMLNIHPSLLPSF 126
>pdb|3UGQ|A Chain A, Crystal Structure Of The Apo Form Of The Yeast
Mitochondrial Threonyl- Trna Synthetase Determined At
2.1 Angstrom Resolution
pdb|3UGT|A Chain A, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase - Orthorhombic Crystal Form
pdb|3UGT|B Chain B, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase - Orthorhombic Crystal Form
pdb|3UGT|C Chain C, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase - Orthorhombic Crystal Form
pdb|3UGT|D Chain D, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase - Orthorhombic Crystal Form
pdb|3UH0|A Chain A, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase (Mst1) In Complex With Threonyl Sulfamoyl
Adenylate
pdb|4EO4|A Chain A, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase (Mst1) In Complex With Seryl Sulfamoyl
Adenylate
pdb|4EO4|B Chain B, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase (Mst1) In Complex With Seryl Sulfamoyl
Adenylate
pdb|4EO4|C Chain C, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase (Mst1) In Complex With Seryl Sulfamoyl
Adenylate
pdb|4EO4|D Chain D, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase (Mst1) In Complex With Seryl Sulfamoyl
Adenylate
Length = 460
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 24 LFCPDFTVASNKKFNSRKKMDYILNCTLSFGGLKLGTQDNLFINYLSR 71
+FC V S + FNS K +D + N F G + N FIN+ +R
Sbjct: 183 IFCTPSQVKS-EIFNSLKLIDIVYNKIFPFVKGGSGAESNYFINFSTR 229
>pdb|1XLY|A Chain A, X-Ray Structure Of The Rna-Binding Protein She2p
pdb|1XLY|B Chain B, X-Ray Structure Of The Rna-Binding Protein She2p
Length = 234
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 23/39 (58%)
Query: 55 GLKLGTQDNLFINYLSRIHRDEDFQFVLAGFSRLLNNPL 93
G +G DN+F+ + ++ +E+FQ + A + +L+ L
Sbjct: 180 GTNIGETDNIFLQEILPVNSEEEFQTLSAAWHSILDGKL 218
>pdb|1MX0|A Chain A, Structure Of Topoisomerase Subunit
pdb|1MX0|B Chain B, Structure Of Topoisomerase Subunit
pdb|1MX0|C Chain C, Structure Of Topoisomerase Subunit
pdb|1MX0|D Chain D, Structure Of Topoisomerase Subunit
pdb|1MX0|E Chain E, Structure Of Topoisomerase Subunit
pdb|1MX0|F Chain F, Structure Of Topoisomerase Subunit
Length = 472
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 16/71 (22%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 2 TPAEDVESVPLAQSLLNAICDLLFCPDFTVASNKKFNSRKKMDYILNCTLSFGGLKLGTQ 61
+P+ D SV + + L+ +F PDF + +K + + +I+ ++FGG +
Sbjct: 310 SPSADSLSV-IGEDLIELGLKKIFNPDFAASITRKPKAYQGHPFIVEAGVAFGGSIPVGE 368
Query: 62 DNLFINYLSRI 72
+ + + Y ++I
Sbjct: 369 EPIVLRYANKI 379
>pdb|1MU5|A Chain A, Structure Of Topoisomerase Subunit
Length = 471
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 16/71 (22%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 2 TPAEDVESVPLAQSLLNAICDLLFCPDFTVASNKKFNSRKKMDYILNCTLSFGGLKLGTQ 61
+P+ D SV + + L+ +F PDF + +K + + +I+ ++FGG +
Sbjct: 309 SPSADSLSV-IGEDLIELGLKKIFNPDFAASITRKPKAYQGHPFIVEAGVAFGGSIPVGE 367
Query: 62 DNLFINYLSRI 72
+ + + Y ++I
Sbjct: 368 EPIVLRYANKI 378
>pdb|1Z59|A Chain A, Topoisomerase Vi-B, Adp-Bound Monomer Form
pdb|1Z5C|A Chain A, Topoisomerase Vi-B, Adp Pi Bound Dimer Form
pdb|1Z5C|B Chain B, Topoisomerase Vi-B, Adp Pi Bound Dimer Form
Length = 469
Score = 27.3 bits (59), Expect = 2.5, Method: Composition-based stats.
Identities = 16/71 (22%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 2 TPAEDVESVPLAQSLLNAICDLLFCPDFTVASNKKFNSRKKMDYILNCTLSFGGLKLGTQ 61
+P+ D SV + + L+ +F PDF + +K + + +I+ ++FGG +
Sbjct: 307 SPSADSLSV-IGEDLIELGLKKIFNPDFAASITRKPKAYQGHPFIVEAGVAFGGSIPVGE 365
Query: 62 DNLFINYLSRI 72
+ + + Y ++I
Sbjct: 366 EPIVLRYANKI 376
>pdb|1Z5A|A Chain A, Topoisomerase Vi-B, Adp-Bound Dimer Form
pdb|1Z5A|B Chain B, Topoisomerase Vi-B, Adp-Bound Dimer Form
pdb|1Z5B|A Chain A, Topoisomerase Vi-B, Adp Alf4- Bound Dimer Form
pdb|1Z5B|B Chain B, Topoisomerase Vi-B, Adp Alf4- Bound Dimer Form
pdb|2HKJ|A Chain A, Topoisomerase Vi-B Bound To Radicicol
Length = 469
Score = 27.3 bits (59), Expect = 2.5, Method: Composition-based stats.
Identities = 16/71 (22%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 2 TPAEDVESVPLAQSLLNAICDLLFCPDFTVASNKKFNSRKKMDYILNCTLSFGGLKLGTQ 61
+P+ D SV + + L+ +F PDF + +K + + +I+ ++FGG +
Sbjct: 307 SPSADSLSV-IGEDLIELGLKKIFNPDFAASITRKPKAYQGHPFIVEAGVAFGGSIPVGE 365
Query: 62 DNLFINYLSRI 72
+ + + Y ++I
Sbjct: 366 EPIVLRYANKI 376
>pdb|3HD6|A Chain A, Crystal Structure Of The Human Rhesus Glycoprotein Rhcg
Length = 490
Score = 27.3 bits (59), Expect = 2.6, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 14 QSLLNAICDLLFCPDFTVASNKKFNSRKKMD--YILNCTLSFGGLKLGTQDNLFI 66
++ +N C L C +VA + + + K+D +I N TL+ GG+ +GT + +
Sbjct: 253 RAAINTYCSLAACVLTSVAISSALHKKGKLDMVHIQNATLA-GGVAVGTAAEMML 306
>pdb|2ZBK|B Chain B, Crystal Structure Of An Intact Type Ii Dna Topoisomerase:
Insights Into Dna Transfer Mechanisms
pdb|2ZBK|D Chain D, Crystal Structure Of An Intact Type Ii Dna Topoisomerase:
Insights Into Dna Transfer Mechanisms
pdb|2ZBK|F Chain F, Crystal Structure Of An Intact Type Ii Dna Topoisomerase:
Insights Into Dna Transfer Mechanisms
pdb|2ZBK|H Chain H, Crystal Structure Of An Intact Type Ii Dna Topoisomerase:
Insights Into Dna Transfer Mechanisms
Length = 530
Score = 26.9 bits (58), Expect = 2.7, Method: Composition-based stats.
Identities = 16/71 (22%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 2 TPAEDVESVPLAQSLLNAICDLLFCPDFTVASNKKFNSRKKMDYILNCTLSFGGLKLGTQ 61
+P+ D SV + + L+ +F PDF + +K + + +I+ ++FGG +
Sbjct: 308 SPSADSLSV-IGEDLIELGLKKIFNPDFAASITRKPKAYQGHPFIVEAGVAFGGSIPVGE 366
Query: 62 DNLFINYLSRI 72
+ + + Y ++I
Sbjct: 367 EPIVLRYANKI 377
>pdb|1WAW|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitor Argadin Against Human
Chitinase
pdb|1WB0|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitor Argifin Against Human
Chitinase
Length = 445
Score = 26.6 bits (57), Expect = 3.6, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 35 KKFNSRKKMDYILNCTLSFGGLKLGTQ 61
++FN KKM+ L L+ GG GTQ
Sbjct: 57 QEFNGLKKMNPKLKTLLAIGGWNFGTQ 83
>pdb|1BCC|B Chain B, Cytochrome Bc1 Complex From Chicken
Length = 422
Score = 26.6 bits (57), Expect = 4.4, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Query: 13 AQSLLNAICDLLFCPDFTVASNKKFNSRKKMDYILN 48
A + NA+ D L+CPD+ + K S + D++ N
Sbjct: 148 AAAYRNALADSLYCPDYRIG---KVTSVELHDFVQN 180
>pdb|3BCC|B Chain B, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|2BCC|B Chain B, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
Length = 422
Score = 26.6 bits (57), Expect = 4.4, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Query: 13 AQSLLNAICDLLFCPDFTVASNKKFNSRKKMDYILN 48
A + NA+ D L+CPD+ + K S + D++ N
Sbjct: 148 AAAYRNALADSLYCPDYRIG---KVTSVELHDFVQN 180
>pdb|1GUV|A Chain A, Structure Of Human Chitotriosidase
Length = 366
Score = 26.2 bits (56), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 35 KKFNSRKKMDYILNCTLSFGGLKLGTQ 61
++FN KKM+ L L+ GG GTQ
Sbjct: 57 QEFNGLKKMNPKLKTLLAIGGWNFGTQ 83
>pdb|1HKI|A Chain A, Crystal Structure Of Human Chitinase In Complex With
Glucoallosamidin B
pdb|1HKJ|A Chain A, Crystal Structure Of Human Chitinase In Complex With
Methylallosamidin
pdb|1HKM|A Chain A, High Resolution Crystal Structure Of Human Chitinase In
Complex With Demethylallosamidin
Length = 365
Score = 26.2 bits (56), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 35 KKFNSRKKMDYILNCTLSFGGLKLGTQ 61
++FN KKM+ L L+ GG GTQ
Sbjct: 57 QEFNGLKKMNPKLKTLLAIGGWNFGTQ 83
>pdb|1LG1|A Chain A, Crystal Structure Of Human Chitotriosidase In Complex
With Chitobiose
pdb|1LG2|A Chain A, Crystal Structure Of Human Chitotriosidase In Complex
With Ethylene Glycol
pdb|1LQ0|A Chain A, Crystal Structure Of Human Chitotriosidase At 2.2
Angstrom Resolution
Length = 365
Score = 26.2 bits (56), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 35 KKFNSRKKMDYILNCTLSFGGLKLGTQ 61
++FN KKM+ L L+ GG GTQ
Sbjct: 57 QEFNGLKKMNPKLKTLLAIGGWNFGTQ 83
>pdb|1HKK|A Chain A, High Resoultion Crystal Structure Of Human Chitinase In
Complex With Allosamidin
Length = 364
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 35 KKFNSRKKMDYILNCTLSFGGLKLGTQ 61
++FN KKM+ L L+ GG GTQ
Sbjct: 57 QEFNGLKKMNPKLKTLLAIGGWNFGTQ 83
>pdb|1W93|A Chain A, Crystal Structure Of Biotin Carboxylase Domain Of Acetyl-
Coenzyme A Carboxylase From Saccharomyces Cerevisiae
Length = 553
Score = 26.2 bits (56), Expect = 5.2, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 59 GTQDNLFIN--YLSRIHRDEDFQFVLAGFSRLLNNPLLQTYLPNSTKKIEF 107
GT +N + N + I D V AG+ NPLL L S +K+ F
Sbjct: 109 GTNNNNYANVDLIVDIAERADVDAVWAGWGHASENPLLPEKLSQSKRKVIF 159
>pdb|1W96|A Chain A, Crystal Structure Of Biotin Carboxylase Domain Of Acetyl-
Coenzyme A Carboxylase From Saccharomyces Cerevisiae In
Complex With Soraphen A
pdb|1W96|B Chain B, Crystal Structure Of Biotin Carboxylase Domain Of Acetyl-
Coenzyme A Carboxylase From Saccharomyces Cerevisiae In
Complex With Soraphen A
pdb|1W96|C Chain C, Crystal Structure Of Biotin Carboxylase Domain Of Acetyl-
Coenzyme A Carboxylase From Saccharomyces Cerevisiae In
Complex With Soraphen A
Length = 554
Score = 26.2 bits (56), Expect = 5.2, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 59 GTQDNLFIN--YLSRIHRDEDFQFVLAGFSRLLNNPLLQTYLPNSTKKIEF 107
GT +N + N + I D V AG+ NPLL L S +K+ F
Sbjct: 110 GTNNNNYANVDLIVDIAERADVDAVWAGWGHASENPLLPEKLSQSKRKVIF 160
>pdb|4B8J|A Chain A, Rimp_alpha1a
Length = 528
Score = 25.8 bits (55), Expect = 6.8, Method: Composition-based stats.
Identities = 7/22 (31%), Positives = 14/22 (63%)
Query: 12 LAQSLLNAICDLLFCPDFTVAS 33
+++ + +CDLL CPD + +
Sbjct: 411 VSEGCIKPLCDLLICPDIRIVT 432
>pdb|2YNS|A Chain A, Rimp_alpha_b54nls
pdb|2YNS|B Chain B, Rimp_alpha_b54nls
pdb|4B8O|A Chain A, Rimp_alpha_sv40tagnls
pdb|4B8P|A Chain A, Rimp_alpha_a89nls
pdb|4B8P|B Chain B, Rimp_alpha_a89nls
Length = 490
Score = 25.8 bits (55), Expect = 6.8, Method: Composition-based stats.
Identities = 7/22 (31%), Positives = 14/22 (63%)
Query: 12 LAQSLLNAICDLLFCPDFTVAS 33
+++ + +CDLL CPD + +
Sbjct: 373 VSEGCIKPLCDLLICPDIRIVT 394
>pdb|3LTF|A Chain A, Crystal Structure Of The Drosophila Epidermal Growth
Factor Receptor Ectodomain In Complex With Spitz
pdb|3LTF|C Chain C, Crystal Structure Of The Drosophila Epidermal Growth
Factor Receptor Ectodomain In Complex With Spitz
pdb|3LTG|A Chain A, Crystal Structure Of The Drosophila Epidermal Growth
Factor Receptor Ectodomain Complexed With A Low
Affinity Spitz Mutant
pdb|3LTG|C Chain C, Crystal Structure Of The Drosophila Epidermal Growth
Factor Receptor Ectodomain Complexed With A Low
Affinity Spitz Mutant
Length = 601
Score = 25.8 bits (55), Expect = 7.3, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 29 FTVASNKKFNSRKKMDYILNCTLSFGGLKLG--TQDNLFINYLSRI 72
+V SNK+ + R D NCT G L+L +NL +++L I
Sbjct: 16 LSVPSNKEHHYRNLRDRYTNCTYVDGNLELTWLPNENLDLSFLDNI 61
>pdb|3I2T|A Chain A, Crystal Structure Of The Unliganded Drosophila Epidermal
Growth Factor Receptor Ectodomain
Length = 551
Score = 25.8 bits (55), Expect = 7.6, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 29 FTVASNKKFNSRKKMDYILNCTLSFGGLKLG--TQDNLFINYLSRI 72
+V SNK+ + R D NCT G L+L +NL +++L I
Sbjct: 16 LSVPSNKEHHYRNLRDRYTNCTYVDGNLELTWLPNENLDLSFLDNI 61
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,722,217
Number of Sequences: 62578
Number of extensions: 132874
Number of successful extensions: 255
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 246
Number of HSP's gapped (non-prelim): 26
length of query: 129
length of database: 14,973,337
effective HSP length: 88
effective length of query: 41
effective length of database: 9,466,473
effective search space: 388125393
effective search space used: 388125393
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)