BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8934
(129 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8IV36|HID1_HUMAN Protein HID1 OS=Homo sapiens GN=HID1 PE=1 SV=1
Length = 788
Score = 118 bits (296), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 51/62 (82%), Positives = 60/62 (96%)
Query: 62 DNLFINYLSRIHRDEDFQFVLAGFSRLLNNPLLQTYLPNSTKKIEFHQELLVLFWKMCDY 121
+NLF+NYLSRIHR+EDFQF+L G +RLL+NPLLQTYLPNSTKKI+FHQELLVLFWK+CD+
Sbjct: 322 ENLFVNYLSRIHREEDFQFILKGIARLLSNPLLQTYLPNSTKKIQFHQELLVLFWKLCDF 381
Query: 122 NK 123
NK
Sbjct: 382 NK 383
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 51/90 (56%), Gaps = 3/90 (3%)
Query: 5 EDVESVPLAQSLLNAICDLLFCPDFTVASNKK--FNSRKKMDYILNCTLSFGGLKLGTQD 62
+D + PLA+SLL AI DLLFCPDFTV S+++ +S + + + +C + +G
Sbjct: 134 DDEHARPLAESLLLAIADLLFCPDFTVQSHRRSTVDSAEDVHSLDSCEYIWEA-GVGFAH 192
Query: 63 NLFINYLSRIHRDEDFQFVLAGFSRLLNNP 92
+ NY+ ++R E + +L FS + P
Sbjct: 193 SPQPNYIHDMNRMELLKLLLTCFSEAMYLP 222
>sp|Q8R1F6|HID1_MOUSE Protein HID1 OS=Mus musculus GN=Hid1 PE=1 SV=1
Length = 788
Score = 118 bits (296), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 51/62 (82%), Positives = 60/62 (96%)
Query: 62 DNLFINYLSRIHRDEDFQFVLAGFSRLLNNPLLQTYLPNSTKKIEFHQELLVLFWKMCDY 121
+NLF+NYLSRIHR+EDFQF+L G +RLL+NPLLQTYLPNSTKKI+FHQELLVLFWK+CD+
Sbjct: 322 ENLFVNYLSRIHREEDFQFILKGIARLLSNPLLQTYLPNSTKKIQFHQELLVLFWKLCDF 381
Query: 122 NK 123
NK
Sbjct: 382 NK 383
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 55/101 (54%), Gaps = 10/101 (9%)
Query: 5 EDVESVPLAQSLLNAICDLLFCPDFTVASNKK--FNSRKKMDYILNCTLSFGGLKLGTQD 62
ED + PLA+SLL AI DLLFCPDFTV ++++ +S + + + +C + +G
Sbjct: 134 EDENARPLAESLLLAIADLLFCPDFTVQNHRRNDVDSAEDVHSLDSCEYIWEA-GVGFAH 192
Query: 63 NLFINYLSRIHRDEDFQFVLAGFSRLLNNPLLQTYLPNSTK 103
+ NY+ ++R E + +L FS + YLP S +
Sbjct: 193 SPQPNYIHDMNRMELLKLLLTCFSEAM-------YLPPSPE 226
>sp|Q54JJ6|HID1_DICDI Protein HID1 OS=Dictyostelium discoideum GN=hid1 PE=3 SV=1
Length = 905
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 63 NLFINYLSRIHRDEDFQFVLAGFSRLLNNPLL--QTYLPNSTKKIEFHQELLVLFWKMCD 120
N FI Y+ + R DF+F F R++N PL+ T LPNSTKKIE HQ+L W
Sbjct: 411 NKFIQYIKTLKRVRDFKFFFNAFERIMNVPLIASHTKLPNSTKKIELHQDLTYTMWLFLS 470
Query: 121 YN 122
YN
Sbjct: 471 YN 472
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 8 ESVPLAQSLLNAICDLLFCPDFTVASNKKFNSRKK 42
++ PLA L++++ DLLF P FTV + S K+
Sbjct: 217 DTTPLAVKLMDSLLDLLFFPGFTVTESLGLKSPKE 251
>sp|P0CO84|EIF3F_CRYNJ Eukaryotic translation initiation factor 3 subunit F
OS=Cryptococcus neoformans var. neoformans serotype D
(strain JEC21 / ATCC MYA-565) GN=CNF04540 PE=3 SV=1
Length = 303
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 54 GGLKLGTQDNLFINYLSRIHRDEDFQFVLAGFSRLLNNPLLQ 95
GG+K G QD L + YLS + R Q LAG LL P+ Q
Sbjct: 264 GGVKAGLQDTLTVEYLSSLVRS---QVELAGRLSLLQQPVAQ 302
>sp|P0CO85|EIF3F_CRYNB Eukaryotic translation initiation factor 3 subunit F
OS=Cryptococcus neoformans var. neoformans serotype D
(strain B-3501A) GN=CNBF0360 PE=3 SV=1
Length = 303
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 54 GGLKLGTQDNLFINYLSRIHRDEDFQFVLAGFSRLLNNPLLQ 95
GG+K G QD L + YLS + R Q LAG LL P+ Q
Sbjct: 264 GGVKAGLQDTLTVEYLSSLVRS---QVELAGRLSLLQQPVAQ 302
>sp|Q9P7M6|YIOC_SCHPO Hid-1 family protein P27G11.12 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=SPAP27G11.12 PE=3 SV=1
Length = 797
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 63 NLFINYLSRIHRDEDFQFVLAGFSRLLNNPLLQTYLPNSTKKIEFHQELLVL 114
N F LS++ DFQ +L G SRLL P +Q+ +P + I F LVL
Sbjct: 298 NYFSILLSKLQPYSDFQIILDGMSRLLYPP-MQSTIPKRSSLIMFDYYPLVL 348
>sp|O14924|RGS12_HUMAN Regulator of G-protein signaling 12 OS=Homo sapiens GN=RGS12 PE=1
SV=1
Length = 1447
Score = 33.1 bits (74), Expect = 0.53, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 85 FSRLLNNPLLQTYLPNSTKKIEFHQELLVLFWKMCDYNKH 124
F RLL +P+ Y + +K EF +E +LFW+ C+Y H
Sbjct: 716 FERLLQDPVGVRYFSDFLRK-EFSEEN-ILFWQACEYFNH 753
>sp|O13776|YE9G_SCHPO Hid-1 family protein C17A5.16 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=SPAC17A5.16 PE=3 SV=2
Length = 925
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 62 DNLFINYLSRIHRDEDFQFVLAGFSRLLNNPL--LQTYLPNSTKKIEFHQELLVLFWKMC 119
+N + Y SR+ D++F++ RLLN P+ + Y+ K E+++ W+
Sbjct: 380 ENQYRLYFSRLQLQADYEFLVNELYRLLNAPVSAISAYISIVQKPNIAFPEIILFLWQAI 439
Query: 120 DYNKH 124
YNK
Sbjct: 440 LYNKR 444
>sp|P18471|TRAU_ECOLI Protein TraU OS=Escherichia coli (strain K12) GN=traU PE=4 SV=1
Length = 330
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 31/77 (40%)
Query: 40 RKKMDYILNCTLSFGGLKLGTQDNLFINYLSRIHRDEDFQFVLAGFSRLLNNPLLQTYLP 99
+ + Y LN S G L+ G D +++ + D +L + + NP+ Q
Sbjct: 138 KYPLTYWLNIITSLGCLEGGDMDIAYLSEIDPTWTDSSLTTILNPEAVIFANPIAQGACA 197
Query: 100 NSTKKIEFHQELLVLFW 116
F+ L VLFW
Sbjct: 198 ADAIASAFNMPLDVLFW 214
>sp|A4Y759|UBIG_SHEPC 3-demethylubiquinone-9 3-methyltransferase OS=Shewanella
putrefaciens (strain CN-32 / ATCC BAA-453) GN=ubiG PE=3
SV=1
Length = 236
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 39/93 (41%), Gaps = 1/93 (1%)
Query: 2 TPAEDVESVPLAQSLLNAICDLLFCPDFTVASNKKFNSRKKMDYILNCTLSFGGLKLGTQ 61
T E +E VP QS++ A CD++ F S N R ++ IL L +GT
Sbjct: 122 TCMEMLEHVPNPQSVIKACCDMVKPGGFVFFSTINRNLRSYVETILGAEYLLKMLPVGTH 181
Query: 62 D-NLFINYLSRIHRDEDFQFVLAGFSRLLNNPL 93
D N FI I ++ + + NPL
Sbjct: 182 DHNKFIKPSELIELVDNTDLICKDAVGITYNPL 214
>sp|A1RJD1|UBIG_SHESW 3-demethylubiquinone-9 3-methyltransferase OS=Shewanella sp.
(strain W3-18-1) GN=ubiG PE=3 SV=1
Length = 236
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 39/93 (41%), Gaps = 1/93 (1%)
Query: 2 TPAEDVESVPLAQSLLNAICDLLFCPDFTVASNKKFNSRKKMDYILNCTLSFGGLKLGTQ 61
T E +E VP QS++ A CD++ F S N R ++ IL L +GT
Sbjct: 122 TCMEMLEHVPNPQSVIKACCDMVKPGGFVFFSTINRNLRSYVETILGAEYLLKMLPVGTH 181
Query: 62 D-NLFINYLSRIHRDEDFQFVLAGFSRLLNNPL 93
D N FI I ++ + + NPL
Sbjct: 182 DHNKFIKPSELIELVDNTDLICKDAVGITYNPL 214
>sp|Q8EEG9|UBIG_SHEON 3-demethylubiquinone-9 3-methyltransferase OS=Shewanella oneidensis
(strain MR-1) GN=ubiG PE=3 SV=1
Length = 236
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 1/93 (1%)
Query: 2 TPAEDVESVPLAQSLLNAICDLLFCPDFTVASNKKFNSRKKMDYILNCTLSFGGLKLGTQ 61
T E +E VP QS++ A CD++ F S N R ++ I+ L +GT
Sbjct: 122 TCMEMLEHVPDPQSVIQACCDMVKPGGFVFFSTINRNVRSFVETIIGAEYLLKMLPIGTH 181
Query: 62 D-NLFINYLSRIHRDEDFQFVLAGFSRLLNNPL 93
D N FI I ++ + + + NPL
Sbjct: 182 DHNKFIKPSELIDLVDNTELICKDALGITYNPL 214
>sp|P08657|LAC9_KLULA Lactose regulatory protein LAC9 OS=Kluyveromyces lactis (strain
ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL
Y-1140 / WM37) GN=LAC9 PE=1 SV=1
Length = 865
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 49/117 (41%), Gaps = 6/117 (5%)
Query: 8 ESVPLAQSLLNAICDLLFCPDFTVASNKKFNSRKKMDYILNCTLSFGGLKLGTQDNLFIN 67
E+V + LLNA+ L + +S+ + + Y+ L G L L +
Sbjct: 419 ENVEIWHILLNAVLALGSWCSNSCSSHHTLYYQNALSYLSTAVLETGSTDLTIALILLTH 478
Query: 68 YLSRIHRDEDFQFVLAGFSRLLNNPLLQTYLPNSTKKIEFHQELLVLFWKM----CD 120
Y+ ++H+ ++ S + + L LPNST I Q VL+W + CD
Sbjct: 479 YVQKMHKPNTAWSLIGLCSHMATSLGLHRDLPNST--IHDQQLRRVLWWTIYCTGCD 533
>sp|Q5ACL4|RTC1_CANAL Restriction of telomere capping protein 1 OS=Candida albicans
(strain SC5314 / ATCC MYA-2876) GN=RTC1 PE=3 SV=1
Length = 1088
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 47 LNCTLSFGGLKLGTQDNLFI---NYLSRIHRDEDFQFVLAGFSRLLNNPLLQTYLPN 100
LNC+LS GG Q ++ I NYL + E Q +++G + L + + + PN
Sbjct: 77 LNCSLSIGGYSGDLQHHVVIGGKNYLRLLCVSESQQRIISGINLLESKSIYNSRAPN 133
>sp|C4YN69|RTC1_CANAW Restriction of telomere capping protein 1 OS=Candida albicans
(strain WO-1) GN=RTC1 PE=3 SV=1
Length = 1088
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 47 LNCTLSFGGLKLGTQDNLFI---NYLSRIHRDEDFQFVLAGFSRLLNNPLLQTYLPN 100
LNC+LS GG Q ++ I NYL + E Q +++G + L + + + PN
Sbjct: 77 LNCSLSIGGYSGDLQHHVVIGGKNYLRLLCVSESQQRIISGINLLESKSIYNSRAPN 133
>sp|Q97ZF0|TOP6B_SULSO Type 2 DNA topoisomerase 6 subunit B OS=Sulfolobus solfataricus
(strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=top6B
PE=3 SV=1
Length = 530
Score = 29.3 bits (64), Expect = 6.7, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 2 TPAEDVESVPLAQSLLNAICDLLFCPDFTVASNKKFNSRKKMDYILNCTLSFGGLKLGTQ 61
+P+ D SV + + L+ +F PDFT + +K + + +I+ ++FGG +
Sbjct: 308 SPSADSLSV-IGEDLIELGLKKIFNPDFTASITRKPKAYQGHPFIVEAGIAFGGSIPVGE 366
Query: 62 DNLFINYLSRI 72
+ + + Y ++I
Sbjct: 367 EPIVLRYANKI 377
>sp|A0KWN3|UBIG_SHESA 3-demethylubiquinone-9 3-methyltransferase OS=Shewanella sp.
(strain ANA-3) GN=ubiG PE=3 SV=1
Length = 236
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 2 TPAEDVESVPLAQSLLNAICDLLFCPDFTVASNKKFNSRKKMDYILNCTLSFGGLKLGTQ 61
T E +E VP QS++ A CD++ F S N + ++ I+ L +GT
Sbjct: 122 TCMEMLEHVPDPQSVIQACCDMVKPGGFVFFSTINRNIKSFVETIIGAEYLLKMLPIGTH 181
Query: 62 D-NLFI 66
D N FI
Sbjct: 182 DHNKFI 187
>sp|Q0HIX5|UBIG_SHESM 3-demethylubiquinone-9 3-methyltransferase OS=Shewanella sp.
(strain MR-4) GN=ubiG PE=3 SV=1
Length = 236
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 2 TPAEDVESVPLAQSLLNAICDLLFCPDFTVASNKKFNSRKKMDYILNCTLSFGGLKLGTQ 61
T E +E VP QS++ A CD++ F S N + ++ I+ L +GT
Sbjct: 122 TCMEMLEHVPDPQSVIQACCDMVKPGGFVFFSTINRNIKSFVETIIGAEYLLKMLPIGTH 181
Query: 62 D-NLFI 66
D N FI
Sbjct: 182 DHNKFI 187
>sp|Q6CT08|ATG9_KLULA Autophagy-related protein 9 OS=Kluyveromyces lactis (strain ATCC
8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 /
WM37) GN=ATG9 PE=3 SV=1
Length = 908
Score = 28.9 bits (63), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 41/98 (41%), Gaps = 15/98 (15%)
Query: 41 KKMDYILN-CTLSFGGLKLGTQDNLFINYLSRIHRDEDFQ--FVLAGFSRLLNNPLLQTY 97
K +++ +N C L F + G F+ R + E+ + FVLAGF ++ +P L TY
Sbjct: 466 KTLEWNINLCILGFAFNEKGYLKQAFLRESQREYLGEELKKRFVLAGFLNIILSPFLVTY 525
Query: 98 L------------PNSTKKIEFHQELLVLFWKMCDYNK 123
S I Q + WK +YN+
Sbjct: 526 FVLLNFFRYFNEYKTSPGSIGSRQYTPIAEWKFREYNE 563
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.138 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,199,313
Number of Sequences: 539616
Number of extensions: 1708249
Number of successful extensions: 3163
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 3145
Number of HSP's gapped (non-prelim): 33
length of query: 129
length of database: 191,569,459
effective HSP length: 95
effective length of query: 34
effective length of database: 140,305,939
effective search space: 4770401926
effective search space used: 4770401926
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)