Query psy8934
Match_columns 129
No_of_seqs 98 out of 113
Neff 4.1
Searched_HMMs 46136
Date Fri Aug 16 23:11:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8934.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8934hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF12722 Hid1: High-temperatur 100.0 1.9E-34 4.2E-39 265.6 8.8 122 5-127 151-405 (895)
2 KOG2226|consensus 100.0 2.2E-30 4.7E-35 234.3 9.5 126 2-127 122-371 (786)
3 PF09742 Dymeclin: Dyggve-Melc 98.4 6.2E-08 1.4E-12 88.1 0.5 67 61-127 322-392 (678)
4 PF06135 DUF965: Bacterial pro 72.5 4.6 9.9E-05 28.7 3.0 43 41-84 34-76 (79)
5 PRK05473 hypothetical protein; 58.4 14 0.00031 26.6 3.3 42 42-84 38-79 (86)
6 COG4472 Uncharacterized protei 41.8 39 0.00084 24.4 3.3 41 42-83 38-78 (88)
7 cd07356 HN_L-whirlin_R1_like F 34.9 51 0.0011 23.4 3.0 42 60-101 19-67 (78)
8 PHA02132 hypothetical protein 25.5 59 0.0013 23.1 2.1 15 107-121 61-75 (86)
9 PF10264 Stork_head: Winged he 17.2 96 0.0021 21.9 1.7 15 9-23 9-23 (80)
10 PRK04184 DNA topoisomerase VI 17.1 24 0.00051 32.5 -1.8 53 3-56 312-364 (535)
No 1
>PF12722 Hid1: High-temperature-induced dauer-formation protein
Probab=100.00 E-value=1.9e-34 Score=265.64 Aligned_cols=122 Identities=45% Similarity=0.768 Sum_probs=108.2
Q ss_pred ccccccchHHHHHHHHHhhccCCCcccccCcccCcchhhHHHHHhhhccccC----------------------------
Q psy8934 5 EDVESVPLAQSLLNAICDLLFCPDFTVASNKKFNSRKKMDYILNCTLSFGGL---------------------------- 56 (129)
Q Consensus 5 ~~~~~~pla~~l~~~l~dllf~~~~t~~~~~~~~~~~~~~~i~~~~v~~~~~---------------------------- 56 (129)
++++.+|||++||++|+|||||+|||||+...++. +..+.||+.|||+..+
T Consensus 151 ~~~~~~pLg~~Ll~al~dLLF~~gFTv~~~~~~~~-~~~~~iWe~GIg~~~~~~~~~~~~dsNR~EvLrLLLtl~S~~lY 229 (895)
T PF12722_consen 151 DDEQSPPLGERLLDALVDLLFCPGFTVPSSSSSPD-KVSYSIWEPGIGTNTSPPSPNKEHDSNRTEVLRLLLTLFSEPLY 229 (895)
T ss_pred cccCCCCHHHHHHHHHHHHhCCCCCcCCCccCCCC-ccceeeccCccccCCCCCCCCHHHHHHHHHHHHHHHHHhchhhc
Confidence 34448899999999999999999999999983333 4455599999999811
Q ss_pred --------------------------------------------------------------------------------
Q psy8934 57 -------------------------------------------------------------------------------- 56 (129)
Q Consensus 57 -------------------------------------------------------------------------------- 56 (129)
T Consensus 230 ~~~~~~~~~~~~l~~l~s~~~~~~~l~L~~SLlNt~~~y~p~~~~~~~lpY~~~~~~d~r~~lV~~slQlL~vlL~y~~~ 309 (895)
T PF12722_consen 230 QPPSLSSTGNKFLTYLVSCTPRQLVLTLLCSLLNTVCRYDPSGNEEWGLPYNHLVFSDSREPLVTYSLQLLNVLLDYPPP 309 (895)
T ss_pred CCCccCCCCCeeeeeeccCcchhhhHHHHHHHHHHHHhcCCCCccccccccccccccCcccHHHHHHHHHHHHheeCCCC
Confidence
Q ss_pred ---CC----------CCchhHHHHHHHhccCchhHHHHHHHHHHHhhchhh------------cccCCCCccchhhHHHH
Q psy8934 57 ---KL----------GTQDNLFINYLSRIHRDEDFQFVLAGFSRLLNNPLL------------QTYLPNSTKKIEFHQEL 111 (129)
Q Consensus 57 ---~~----------~~~~N~FR~yLsrLHR~eDf~FIl~glsriL~~Pl~------------~syLP~s~k~i~~~~El 111 (129)
.. .+++|+||+|||||||++||+||++||+|||++|++ ++|+|++++++.|++|+
T Consensus 310 ~~~~~~~~~~~~~~~~~~~N~~r~yl~~lhr~~D~~fi~~gl~~iL~~pl~~~~~~es~~f~~~~~lp~s~~~~~~~~e~ 389 (895)
T PF12722_consen 310 SQTNSSFSSETNLTSSKPKNLFRNYLSKLHREEDFQFILDGLTRILNNPLQSAIEQESNPFSSSSYLPGSQKPSPWAQEL 389 (895)
T ss_pred CCCccccccccCcCCCCcchHHHHHHhccCcHHHHHHHHHHHHHHHHhhhhhhhhccccccccccccccccccchHHHHH
Confidence 01 688999999999999999999999999999999999 58999999999999999
Q ss_pred HHHHHHHhhccccccc
Q psy8934 112 LVLFWKMCDYNKHNKE 127 (129)
Q Consensus 112 lmL~Wellq~NKrFr~ 127 (129)
+||||++|||||+|+.
T Consensus 390 l~l~W~l~~~Nk~F~~ 405 (895)
T PF12722_consen 390 LMLFWELIQCNKRFRN 405 (895)
T ss_pred HHHHHHHHhhCHHHHH
Confidence 9999999999999985
No 2
>KOG2226|consensus
Probab=99.96 E-value=2.2e-30 Score=234.29 Aligned_cols=126 Identities=44% Similarity=0.723 Sum_probs=110.6
Q ss_pred CCcccccccchHHHHHHHHHhhccCCCcccccCccc--------CcchhhHHHHHhhhccccC-----------------
Q psy8934 2 TPAEDVESVPLAQSLLNAICDLLFCPDFTVASNKKF--------NSRKKMDYILNCTLSFGGL----------------- 56 (129)
Q Consensus 2 ~~~~~~~~~pla~~l~~~l~dllf~~~~t~~~~~~~--------~~~~~~~~i~~~~v~~~~~----------------- 56 (129)
.|...+-.+|||.+|+++.+|||||||||++.-..+ ++-++|+|||++|||+...
T Consensus 122 lpk~~d~~~PL~~~llns~~dLlf~~dfTi~~~~~~~~~~~k~~~siesC~~IWEaGVg~~et~~~~~~~~~~R~EvLrL 201 (786)
T KOG2226|consen 122 LPKTVDDLKPLAASLLNSFSDLLFLPDFTITLCFQHNFTKIKELSSIESCEYIWEAGVGIPETPPKPAYDERHRTEVLRL 201 (786)
T ss_pred CcCCCCccCchhHHHHHHHhhhhhccccchhhhhhcCcchhhhhcchhHHHHHHhcccCCCCCCCCchHHHHHHHHHHHH
Confidence 455556699999999999999999999999944333 2336999999999999800
Q ss_pred --------------------------------------------------------------------------------
Q psy8934 57 -------------------------------------------------------------------------------- 56 (129)
Q Consensus 57 -------------------------------------------------------------------------------- 56 (129)
T Consensus 202 LL~lfSe~lY~rsdE~~ss~~~~~~s~ank~lvL~ll~SliNT~~~~~p~~~~~~yn~l~~sds~~sLve~~~qiLli~l 281 (786)
T KOG2226|consen 202 LLVLFSETLYDRSDELDSSVLNYIFSSANKRLVLPLLTSLINTVCRYDPVGWKNSYNQLLNSDSLESLVEYCLQILLILL 281 (786)
T ss_pred HHHHhhHHHHhcccccCceeEEEEEEecCCceeehhhHHhhhhheeccccccccccccccccchhhhHHHHHHHHHHHhh
Confidence
Q ss_pred -----------------CCCCchhHHHHHHHhccCchhHHHHHHHHHHHhhchhhcc--cCCCCccchhhHHHHHHHHHH
Q psy8934 57 -----------------KLGTQDNLFINYLSRIHRDEDFQFVLAGFSRLLNNPLLQT--YLPNSTKKIEFHQELLVLFWK 117 (129)
Q Consensus 57 -----------------~~~~~~N~FR~yLsrLHR~eDf~FIl~glsriL~~Pl~~s--yLP~s~k~i~~~~EllmL~We 117 (129)
.+.-++|+|++|+||+||++||+||++||+|+|++|+.++ |+|+++|...||||+|+|+|+
T Consensus 282 Dh~~~e~t~~y~~~r~s~g~~~kN~f~~ylSrlhr~~DF~fil~gi~RLL~nPl~s~s~yi~~s~k~~~~~~E~Liflw~ 361 (786)
T KOG2226|consen 282 DHRIKENTHLYQNGRSSEGQHIKNYFINYLSRLHRTEDFLFILKGITRLLSNPLKSESQYIPNSTKRKRCHPELLIFLWL 361 (786)
T ss_pred ccccccCceeccCCcCCCccchhhHHHHHHHHhccchhHHHHHHHHHHHhcchhhcccccccccchhhhhhHHHHHHHHH
Confidence 3455799999999999999999999999999999999865 999999999999999999999
Q ss_pred Hhhccccccc
Q psy8934 118 MCDYNKHNKE 127 (129)
Q Consensus 118 llq~NKrFr~ 127 (129)
+|++||||+.
T Consensus 362 ~i~yNkrF~~ 371 (786)
T KOG2226|consen 362 LITYNKRFTD 371 (786)
T ss_pred HHhccHHHHH
Confidence 9999999974
No 3
>PF09742 Dymeclin: Dyggve-Melchior-Clausen syndrome protein; InterPro: IPR019142 Dymeclin (Dyggve-Melchior-Clausen syndrome protein) contains a large number of leucine and isoleucine residues and a total of 17 repeated dileucine motifs. It is characteristically about 700 residues long and present in plants and animals. In humans, mutations in the gene coding for this protein give rise to a disorder called Dyggve-Melchior-Clausen syndrome (DMC, MIM 223800), which is an autosomal-recessive disorder characterised by the association of spondylo-epi-metaphyseal dysplasia and mental retardation []. This entry also includes Hid1 (high-temperature-induced dauer-formation protein 1) from Caenorhabditis elegans which encodes a novel highly conserved putative transmembrane protein expressed in neurons []. It contains up to seven potential transmembrane domains separated by regions of low complexity. Functionally this protein might be involved in vesicle secretion or be an inter-cellular signalling protein or be a novel insulin receptor [].
Probab=98.40 E-value=6.2e-08 Score=88.09 Aligned_cols=67 Identities=30% Similarity=0.275 Sum_probs=56.4
Q ss_pred chhHHHHHHHhccCchh--HHHHHHHHHHHhh--chhhcccCCCCccchhhHHHHHHHHHHHhhccccccc
Q psy8934 61 QDNLFINYLSRIHRDED--FQFVLAGFSRLLN--NPLLQTYLPNSTKKIEFHQELLVLFWKMCDYNKHNKE 127 (129)
Q Consensus 61 ~~N~FR~yLsrLHR~eD--f~FIl~glsriL~--~Pl~~syLP~s~k~i~~~~EllmL~Wellq~NKrFr~ 127 (129)
..|-||.++..+.+.++ ++++..|+.+... .++..++|+++..+...++|.++|+|.+++.|++|+.
T Consensus 322 ~~Np~r~al~~~~d~~~~~~~~~~~~~~~~~~~~~~i~f~~L~~s~~~~~~~~~~~lLLY~LL~~N~~F~~ 392 (678)
T PF09742_consen 322 KGNPYREALFSFSDIQDEDFDFDSSGISSSLVNSFKINFTALYNSLCKSLSHDELLLLLYKLLHRNPNFLN 392 (678)
T ss_pred CCChHHHHHHhhhcchhccccccccccccccccceeecHHHHHHHHHHhhCCcchHHHHHHHHhcCHHHHH
Confidence 47888888777777765 8899999998888 4445678999988899999999999999999999974
No 4
>PF06135 DUF965: Bacterial protein of unknown function (DUF965); InterPro: IPR009309 This family consists of several hypothetical bacterial proteins. The function of the family is unknown.
Probab=72.54 E-value=4.6 Score=28.68 Aligned_cols=43 Identities=23% Similarity=0.162 Sum_probs=36.1
Q ss_pred hhhHHHHHhhhccccCCCCCchhHHHHHHHhccCchhHHHHHHH
Q psy8934 41 KKMDYILNCTLSFGGLKLGTQDNLFINYLSRIHRDEDFQFVLAG 84 (129)
Q Consensus 41 ~~~~~i~~~~v~~~~~~~~~~~N~FR~yLsrLHR~eDf~FIl~g 84 (129)
+|..+|+-|.++=++. |.+..|-.|..+.|+.|+|-++-++..
T Consensus 34 nPinQivGYllSGDPa-YItsh~nAR~lIr~~eRDellEeLv~~ 76 (79)
T PF06135_consen 34 NPINQIVGYLLSGDPA-YITSHNNARNLIRKIERDELLEELVRF 76 (79)
T ss_pred ChHHHHHhheecCCCc-cccCcccHHHHHHHHhHHHHHHHHHHH
Confidence 3677888888887777 999999999999999999988777654
No 5
>PRK05473 hypothetical protein; Provisional
Probab=58.41 E-value=14 Score=26.60 Aligned_cols=42 Identities=19% Similarity=0.181 Sum_probs=34.9
Q ss_pred hhHHHHHhhhccccCCCCCchhHHHHHHHhccCchhHHHHHHH
Q psy8934 42 KMDYILNCTLSFGGLKLGTQDNLFINYLSRIHRDEDFQFVLAG 84 (129)
Q Consensus 42 ~~~~i~~~~v~~~~~~~~~~~N~FR~yLsrLHR~eDf~FIl~g 84 (129)
|-.+|+-|.+|=++. |.+..|-.|..+.|+.|+|-++=++..
T Consensus 38 PinQiVGYllSGDPa-YItsh~nAR~lIrkiERDEilEeLv~~ 79 (86)
T PRK05473 38 PINQIVGYLLSGDPA-YIPRHNDARNLIRKLERDEILEELVKS 79 (86)
T ss_pred hHHHHHhhhccCCCC-ccCCcccHHHHHHHHhHHHHHHHHHHH
Confidence 577888888887777 999999999999999999977665544
No 6
>COG4472 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.76 E-value=39 Score=24.43 Aligned_cols=41 Identities=20% Similarity=0.127 Sum_probs=32.6
Q ss_pred hhHHHHHhhhccccCCCCCchhHHHHHHHhccCchhHHHHHH
Q psy8934 42 KMDYILNCTLSFGGLKLGTQDNLFINYLSRIHRDEDFQFVLA 83 (129)
Q Consensus 42 ~~~~i~~~~v~~~~~~~~~~~N~FR~yLsrLHR~eDf~FIl~ 83 (129)
|--+|+-|.++=+++ |.+..|-.|+-+-|+.|++-..=++.
T Consensus 38 piNQiVGYllSGDPa-YIpr~ndARn~IRk~eRDeIvEElvk 78 (88)
T COG4472 38 PINQIVGYLLSGDPA-YIPRYNDARNQIRKLERDEIVEELVK 78 (88)
T ss_pred hHHHHHhhhccCCcc-ccCccccHHHHHHHHhHHHHHHHHHH
Confidence 567788888877766 99999999999999999986554443
No 7
>cd07356 HN_L-whirlin_R1_like First harmonin_N_like domain (repeat 1) of the long isoform of whirlin, and related domains. This subgroup contains the first of two harmonin_N_like domains of the long isoform of whirlin, and related domains. Whirlin is a postsynaptic density-95/discs-large/ZO-1 (PDZ) domain-containing scaffold protein which binds various components of the Usher protein network of the inner ear and the retina: erythrocyte protein p55, usherin, VlGR1, and myosin XVa. The long isoform of whirlin contains two harmonin_N_like domains, and three PDZ protein-binding domains, PDZ1-3. This first harmonin_N_like domain precedes PDZ1, and is a putative protein-binding module based on its sequence similarity to the N-terminal domain of harmonin. This first harmonin_N_like domain has been assayed for interaction with the cytoplasmic domain of cadherin 23 (a component of the Usher network and an interacting partner of the harmonin N-domain), however no interaction could be detected. Th
Probab=34.92 E-value=51 Score=23.41 Aligned_cols=42 Identities=21% Similarity=0.408 Sum_probs=36.2
Q ss_pred CchhHHHHHHHhccCchhHHHHHHHHHHHhhchh-------hcccCCCC
Q psy8934 60 TQDNLFINYLSRIHRDEDFQFVLAGFSRLLNNPL-------LQTYLPNS 101 (129)
Q Consensus 60 ~~~N~FR~yLsrLHR~eDf~FIl~glsriL~~Pl-------~~syLP~s 101 (129)
.-++.|.+-|...|+..|.--++.++.-+|+.|- ....+|.|
T Consensus 19 ~Er~~f~h~Ln~Y~~~RnV~~Lv~sL~~vLd~P~KrqllplLr~vIP~s 67 (78)
T cd07356 19 AEREEFIHCLNDYHAKRNVYDLVQSLKVVLDTPEKRQLLPLLRLVIPRS 67 (78)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHhCCHhHhHHHHHHHHHcccH
Confidence 5678999999999999999999999999999984 23567766
No 8
>PHA02132 hypothetical protein
Probab=25.54 E-value=59 Score=23.13 Aligned_cols=15 Identities=20% Similarity=0.614 Sum_probs=13.9
Q ss_pred hHHHHHHHHHHHhhc
Q psy8934 107 FHQELLVLFWKMCDY 121 (129)
Q Consensus 107 ~~~EllmL~Wellq~ 121 (129)
|.|-.+.|+|++|+.
T Consensus 61 wlp~~~~l~~kl~ef 75 (86)
T PHA02132 61 WLPLAIYLVCKLCEF 75 (86)
T ss_pred HHHHHHHHHHHHHHe
Confidence 999999999999985
No 9
>PF10264 Stork_head: Winged helix Storkhead-box1 domain; InterPro: IPR019391 In humans the Storkhead-box protein controls polyploidization of extravillus trophoblast and is implicated in pre-eclampsia []. This entry represents the conserved N-terminal winged-helix domain, which is likely to bind DNA.
Probab=17.16 E-value=96 Score=21.89 Aligned_cols=15 Identities=40% Similarity=0.550 Sum_probs=13.4
Q ss_pred ccchHHHHHHHHHhh
Q psy8934 9 SVPLAQSLLNAICDL 23 (129)
Q Consensus 9 ~~pla~~l~~~l~dl 23 (129)
-.||+|-|.+++.||
T Consensus 9 fiPL~EvlC~~I~dl 23 (80)
T PF10264_consen 9 FIPLPEVLCWVISDL 23 (80)
T ss_pred ceeHHHHHHHHHHHH
Confidence 569999999999997
No 10
>PRK04184 DNA topoisomerase VI subunit B; Validated
Probab=17.13 E-value=24 Score=32.51 Aligned_cols=53 Identities=19% Similarity=0.394 Sum_probs=37.7
Q ss_pred CcccccccchHHHHHHHHHhhccCCCcccccCcccCcchhhHHHHHhhhccccC
Q psy8934 3 PAEDVESVPLAQSLLNAICDLLFCPDFTVASNKKFNSRKKMDYILNCTLSFGGL 56 (129)
Q Consensus 3 ~~~~~~~~pla~~l~~~l~dllf~~~~t~~~~~~~~~~~~~~~i~~~~v~~~~~ 56 (129)
||.+ -..|+-|++|..=+-=.|=|||--...++...-..--.|+++|++|++.
T Consensus 312 pp~~-~lspige~~i~~gl~~~~~p~f~~~~tr~p~~y~g~pfiVE~~iayGg~ 364 (535)
T PRK04184 312 PPTA-CLSPIGEELIEKGLKKILKPEFVAAVTRKPKVYSGHPFIVEVGIAYGGE 364 (535)
T ss_pred CCCc-cCCCCCHHHHHHHHHHhcCccEEEEeccCCcccCCCCeEEEEEeeecCC
Confidence 5555 6679999999988888999999544433221111223899999999987
Done!