Query psy8934
Match_columns 129
No_of_seqs 98 out of 113
Neff 4.1
Searched_HMMs 29240
Date Fri Aug 16 23:11:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8934.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8934hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a7o_A Huntingtin interacting 22.4 42 0.0014 24.2 1.9 39 46-89 26-64 (112)
2 2grr_B RAN GTPase-activating p 13.3 3E+02 0.01 20.9 4.9 70 5-77 65-154 (170)
3 2krx_A ASL3597 protein; struct 10.8 58 0.002 22.8 0.1 21 12-32 58-78 (94)
4 1u9d_A Hypothetical protein VC 10.7 86 0.0029 22.4 1.0 24 9-32 29-54 (122)
5 3arc_K Photosystem II reaction 10.0 1E+02 0.0035 18.2 1.0 10 44-53 27-36 (37)
6 2yf4_A MAZG-like nucleoside tr 9.7 85 0.0029 23.4 0.7 12 15-26 81-92 (154)
7 2dlv_A RGS18, regulator of G-p 9.3 2.1E+02 0.007 19.2 2.6 25 60-84 27-51 (140)
8 3ke4_A Hypothetical cytosolic 9.3 1.4E+02 0.0046 23.3 1.8 21 8-28 163-183 (213)
9 3k4t_A Virion-associated prote 9.0 1E+02 0.0034 21.6 0.8 24 1-24 34-57 (95)
10 2dlr_A RGS10, regulator of G-p 8.6 2.2E+02 0.0074 19.5 2.5 25 60-84 27-51 (149)
No 1
>2a7o_A Huntingtin interacting protein B; SRI domain, SRI, HSRI, SET2, HSET2, phosphoctd associating protein, SET2 RPB1-interacting domain, PCID, PCAP; NMR {Homo sapiens}
Probab=22.38 E-value=42 Score=24.19 Aligned_cols=39 Identities=15% Similarity=0.188 Sum_probs=27.0
Q ss_pred HHHhhhccccCCCCCchhHHHHHHHhccCchhHHHHHHHHHHHh
Q psy8934 46 ILNCTLSFGGLKLGTQDNLFINYLSRIHRDEDFQFVLAGFSRLL 89 (129)
Q Consensus 46 i~~~~v~~~~~~~~~~~N~FR~yLsrLHR~eDf~FIl~glsriL 89 (129)
|-+.-++++.+ |.+++=. +|||-.+|||++++.=++...
T Consensus 26 is~~Vv~~L~p-YRk~~Ck----~GRITs~EDFK~LaRKLTh~V 64 (112)
T 2a7o_A 26 MSQFIVQCLNP-YRKPDCK----VGRITTTEDFKHLARKLTHGV 64 (112)
T ss_dssp HHHHHHHHHTT-TSSTTCS----SSBCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcc-cccCccc----cCccccHHHHHHHHHHHHHHH
Confidence 33444445544 5566555 789999999999998887543
No 2
>2grr_B RAN GTPase-activating protein 1; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} SCOP: a.118.12.1 PDB: 2grn_B 2grp_B 2grq_B 2gro_B 1z5s_C 3uip_C* 3uio_C 3uin_C* 2io2_C 2io3_C 2iy0_C 1kps_B
Probab=13.31 E-value=3e+02 Score=20.94 Aligned_cols=70 Identities=11% Similarity=0.152 Sum_probs=48.5
Q ss_pred ccccccchHHHHHHHHHhhcc-CCCcccccC--------------cccCcc---hhhHHHHHhhhc--cccCCCCCchhH
Q psy8934 5 EDVESVPLAQSLLNAICDLLF-CPDFTVASN--------------KKFNSR---KKMDYILNCTLS--FGGLKLGTQDNL 64 (129)
Q Consensus 5 ~~~~~~pla~~l~~~l~dllf-~~~~t~~~~--------------~~~~~~---~~~~~i~~~~v~--~~~~~~~~~~N~ 64 (129)
++.+.++.|.+++|+|.==.| +..+|=.+- .+.++. ++|-+.++..++ |=+. ...|+
T Consensus 65 ~~~~vk~aal~~~daL~k~aF~~a~~~~~~~~n~LLV~lGLLKSEdk~k~~~~l~G~~~aL~~avqq~yFp~---~~~~~ 141 (170)
T 2grr_B 65 DEATVRMAVQDAVDALMQKAFNSSSFNSNTFLTRLLVHMGLLKSEDKVKAIANLYGPLMALNHMVQQDYFPK---ALAPL 141 (170)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHTSTTCCHHHHHHHHHHHTTSSCCSSCCCCCSCCHHHHHHHHHHTTSTTSCG---GGHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHhcchhhhhcccCCCCchHHHHHHHHHhccccccH---HHHHH
Confidence 445688999999999988777 665542221 122322 588888888888 4433 55899
Q ss_pred HHHHHHhccCchh
Q psy8934 65 FINYLSRIHRDED 77 (129)
Q Consensus 65 FR~yLsrLHR~eD 77 (129)
|+.|+.|=++.-|
T Consensus 142 lkaFl~kp~~~~~ 154 (170)
T 2grr_B 142 LLAFVTKPNSALE 154 (170)
T ss_dssp HHHHHHSCCHHHH
T ss_pred HHHHHhCCccccc
Confidence 9999998776544
No 3
>2krx_A ASL3597 protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, unknown function; NMR {Nostoc SP}
Probab=10.81 E-value=58 Score=22.76 Aligned_cols=21 Identities=24% Similarity=0.322 Sum_probs=18.6
Q ss_pred hHHHHHHHHHhhccCCCcccc
Q psy8934 12 LAQSLLNAICDLLFCPDFTVA 32 (129)
Q Consensus 12 la~~l~~~l~dllf~~~~t~~ 32 (129)
-|+.|+++-|||=.-||++|.
T Consensus 58 qaq~Lldt~CELei~pG~~lQ 78 (94)
T 2krx_A 58 QAQHLIDTSCELDVGAGKYLQ 78 (94)
T ss_dssp HHHHHHHHCCCEEEETTEEEE
T ss_pred HHHHHHHheeeeeeCCCCEEE
Confidence 489999999999999998775
No 4
>1u9d_A Hypothetical protein VC0714; structural genomics, MCSG, protein STR initiative, PSI, midwest center for structural genomics; 1.70A {Vibrio cholerae o1 biovar eltor str} SCOP: d.80.1.5
Probab=10.66 E-value=86 Score=22.37 Aligned_cols=24 Identities=33% Similarity=0.451 Sum_probs=19.8
Q ss_pred ccchHHHHHHHHHhhccCC--Ccccc
Q psy8934 9 SVPLAQSLLNAICDLLFCP--DFTVA 32 (129)
Q Consensus 9 ~~pla~~l~~~l~dllf~~--~~t~~ 32 (129)
.+.++.+|+|.|+|+.=|| +||+-
T Consensus 29 v~~lS~~Lid~La~i~~~~~e~fTle 54 (122)
T 1u9d_A 29 VESLVPTLLNELSSLLSTARNAFTFE 54 (122)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGCEEE
T ss_pred HHHHhHHHHHHHHHHHCCCcccEEEE
Confidence 5689999999999999987 35543
No 5
>3arc_K Photosystem II reaction center protein K; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1izl_K* 1s5l_K* 2axt_K* 3bz1_K* 3bz2_K* 3kzi_K* 3prq_K* 3prr_K* 3a0b_K* 3a0h_K*
Probab=10.01 E-value=1e+02 Score=18.18 Aligned_cols=10 Identities=10% Similarity=0.607 Sum_probs=7.3
Q ss_pred HHHHHhhhcc
Q psy8934 44 DYILNCTLSF 53 (129)
Q Consensus 44 ~~i~~~~v~~ 53 (129)
-..||+.|||
T Consensus 27 afvWQAav~f 36 (37)
T 3arc_K 27 AFVWQAAVGF 36 (37)
T ss_dssp HHHHHHHTTT
T ss_pred HHHHHHhhcC
Confidence 3568888886
No 6
>2yf4_A MAZG-like nucleoside triphosphate pyrophosphohydr; hydrolase, dimeric dutpase; HET: GOL; 1.70A {Deinococcus radiodurans} PDB: 2yf3_A* 2yeu_A* 2yf9_A 2yfc_A* 2yfd_A*
Probab=9.74 E-value=85 Score=23.38 Aligned_cols=12 Identities=33% Similarity=0.708 Sum_probs=10.3
Q ss_pred HHHHHHHhhccC
Q psy8934 15 SLLNAICDLLFC 26 (129)
Q Consensus 15 ~l~~~l~dllf~ 26 (129)
++.|+|+|++.+
T Consensus 81 e~aDAL~DllYv 92 (154)
T 2yf4_A 81 PLAHELADLLYV 92 (154)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHhChhhH
Confidence 688999999875
No 7
>2dlv_A RGS18, regulator of G-protein signaling 18; RGS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=9.35 E-value=2.1e+02 Score=19.24 Aligned_cols=25 Identities=20% Similarity=0.351 Sum_probs=21.3
Q ss_pred CchhHHHHHHHhccCchhHHHHHHH
Q psy8934 60 TQDNLFINYLSRIHRDEDFQFVLAG 84 (129)
Q Consensus 60 ~~~N~FR~yLsrLHR~eDf~FIl~g 84 (129)
....+|+.||.+-+-.|-+.|....
T Consensus 27 ~~~~~F~~Fl~~e~s~enl~Fw~~v 51 (140)
T 2dlv_A 27 DGLEAFTRFLKTEFSEENIEFWIAC 51 (140)
T ss_dssp HHHHHHHHHHHHTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 4578999999999999989888754
No 8
>3ke4_A Hypothetical cytosolic protein; helix bundle, transferase; 1.90A {Bacillus cereus} PDB: 3ke5_A*
Probab=9.27 E-value=1.4e+02 Score=23.34 Aligned_cols=21 Identities=19% Similarity=0.292 Sum_probs=16.8
Q ss_pred cccchHHHHHHHHHhhccCCC
Q psy8934 8 ESVPLAQSLLNAICDLLFCPD 28 (129)
Q Consensus 8 ~~~pla~~l~~~l~dllf~~~ 28 (129)
+.-|.+-..||-|+|+||.--
T Consensus 163 ~v~~~~l~YLNRLSD~LFvlA 183 (213)
T 3ke4_A 163 KINEVVLKYVNRLSDYLFAIA 183 (213)
T ss_dssp CCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhHHHHHHHHHH
Confidence 355778889999999999643
No 9
>3k4t_A Virion-associated protein; coiled-coil, viral protein, tetramer, DNA-binding protein, P binding; 2.59A {Cauliflower mosaic virus}
Probab=9.00 E-value=1e+02 Score=21.63 Aligned_cols=24 Identities=17% Similarity=0.218 Sum_probs=18.1
Q ss_pred CCCcccccccchHHHHHHHHHhhc
Q psy8934 1 STPAEDVESVPLAQSLLNAICDLL 24 (129)
Q Consensus 1 ~~~~~~~~~~pla~~l~~~l~dll 24 (129)
||+|+.+...++|--+|.-|.|..
T Consensus 34 s~~p~~~~lEsiAAKIIkDisdkI 57 (95)
T 3k4t_A 34 SQNPIKESLETVAAKIVNDLTKLI 57 (95)
T ss_dssp TSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcchhhHHHHHHHHHHHHHHHH
Confidence 577777777788888888877754
No 10
>2dlr_A RGS10, regulator of G-protein signaling 10; RGS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=8.61 E-value=2.2e+02 Score=19.52 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=21.1
Q ss_pred CchhHHHHHHHhccCchhHHHHHHH
Q psy8934 60 TQDNLFINYLSRIHRDEDFQFVLAG 84 (129)
Q Consensus 60 ~~~N~FR~yLsrLHR~eDf~FIl~g 84 (129)
....+|+.||.+-+-.|-+.|..+.
T Consensus 27 ~g~~~F~~FL~~e~~~Enl~Fw~~v 51 (149)
T 2dlr_A 27 EGVKRFREFLKKEFSEENVLFWLAC 51 (149)
T ss_dssp HHHHHHHHHHHHHTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 4578999999999999989888753
Done!