RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8934
(129 letters)
>gnl|CDD|221734 pfam12722, Hid1, High-temperature-induced dauer-formation protein.
Hid1 (high-temperature-induced dauer-formation protein
1) represents proteins of approximately 800 residues
long and is conserved from fungi to humans. It contains
up to seven potential transmembrane domains separated by
regions of low complexity. Functionally it might be
involved in vesicle secretion or be an inter-cellular
signalling protein or be a novel insulin receptor.
Length = 813
Score = 102 bits (256), Expect = 2e-26
Identities = 46/141 (32%), Positives = 67/141 (47%), Gaps = 26/141 (18%)
Query: 7 VESVPLAQSLLNAICDLLFCPDFTVASNKKFNSRKKMDY----------ILNCTLS---- 52
E + L SLLN +C + P+ +N+ D +L L
Sbjct: 249 HEVLCLLCSLLNTVCR--YNPNGWKEYGLPYNNSVFKDSREILVEYSLQLLLVMLLYPIP 306
Query: 53 --------FGGLKLGTQDNLFINYLSRIHRDEDFQFVLAGFSRLLNNPL--LQTYLPNST 102
+ G K NLF NYLSR+HR+ED QF+L G +R+L NP+ +YLPNS
Sbjct: 307 SSTRLSFLYLGSKNSKPKNLFRNYLSRLHREEDLQFILDGLTRILKNPIQANSSYLPNSP 366
Query: 103 KKIEFHQELLVLFWKMCDYNK 123
K + + E+L+L W++ NK
Sbjct: 367 KVVPWAPEMLILLWELIQCNK 387
Score = 48.5 bits (116), Expect = 1e-07
Identities = 21/43 (48%), Positives = 31/43 (72%), Gaps = 2/43 (4%)
Query: 5 EDVESVPLAQSLLNAICDLLFCPDFTVASNKKFNSRKKMDYIL 47
ED ++ PL + LL+A+ DLLFCPDFTV S + +S+ K+ Y +
Sbjct: 149 EDEDAKPLGEELLDALVDLLFCPDFTVPSPR--SSKGKVSYCI 189
>gnl|CDD|220375 pfam09742, Dymeclin, Dyggve-Melchior-Clausen syndrome protein.
Dymeclin (Dyggve-Melchior-Clausen syndrome protein)
contains a large number of leucine and isoleucine
residues and a total of 17 repeated dileucine motifs. It
is characteristically about 700 residues long and
present in plants and animals. Mutations in the gene
coding for this protein in humans give rise to the
disorder Dyggve-Melchior-Clausen syndrome (DMC, MIM
223800) which is an autosomal-recessive disorder
characterized by the association of a
spondylo-epi-metaphyseal dysplasia and mental
retardation. DYM transcripts are widely expressed
throughout human development and Dymeclin is not an
integral membrane protein of the ER, but rather a
peripheral membrane protein dynamically associated with
the Golgi apparatus.
Length = 659
Score = 59.0 bits (143), Expect = 3e-11
Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 5/61 (8%)
Query: 63 NLFINYLSRIHRDEDFQFVLAGFSRLLNNPLLQTYLPNSTKKIEFHQELLVLFWKMCDYN 122
L + YLS I R N + + L +S K+ FH ELL+L +K+ N
Sbjct: 320 RLALFYLSDIERSSSVSS-----LSGSENLIDFSALYDSLCKLLFHDELLLLLYKLLHRN 374
Query: 123 K 123
Sbjct: 375 S 375
>gnl|CDD|182175 PRK09971, PRK09971, xanthine dehydrogenase subunit XdhB;
Provisional.
Length = 291
Score = 31.2 bits (71), Expect = 0.099
Identities = 10/37 (27%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Query: 66 INYLSRIHRDEDFQFV---LAGFSRLLNNPLLQTYLP 99
I L I ED F++++ +P++Q +LP
Sbjct: 55 IAELRGITLAEDGSIRIGAATTFTQIIEDPIIQKHLP 91
>gnl|CDD|188696 cd08742, RGS_RGS12, Regulator of G protein signaling (RGS) domain
found in the RGS12 protein. RGS (Regulator of G-protein
Signaling) domain is an essential part of the RGS12
protein. RGS12 is a member of the RA/RGS subfamily of
RGS proteins family, a diverse group of multifunctional
proteins that regulate cellular signaling events
downstream of G-protein coupled receptors (GPCRs). As a
major G-protein regulator, RGS domain containing
proteins are involved in many crucial cellular processes
such as regulation of intracellular trafficking, glial
differentiation, embryonic axis formation, skeletal and
muscle development, and cell migration during early
embryogenesis. RGS12 belong to the R12 RGS subfamily,
which includes RGS10 and RGS14, all of which are highly
selective for G-alpha-i1 over G-alpha-q. RGS12 exist in
multiple splice variants: RGS12s (short) contains the
core RGS/RBD/GoLoco domains, while RGS12L (long) has
additional N-terminal PDZ and PTB domains. RGS12 splice
variants show distinct expression patterns, suggesting
that they have discrete functions during mouse
embryogenesis. RGS12 also may play a critical role in
coordinating Ras-dependent signals that are required for
promoting and maintaining neuronal differentiation.
Length = 115
Score = 30.0 bits (67), Expect = 0.17
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 85 FSRLLNNPLLQTYLPNSTKKIEFHQELLVLFWKMCDYNKH 124
F RLL +P+ Y +K EF +E +LFW+ C+Y H
Sbjct: 1 FERLLQDPVGVRYFSEFLRK-EFSEEN-ILFWQACEYFNH 38
>gnl|CDD|215206 PLN02362, PLN02362, hexokinase.
Length = 509
Score = 29.8 bits (67), Expect = 0.35
Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Query: 4 AEDVESVPLAQSLLNAICDLLFCPDFTVASNKKF 37
++DVE P+ Q L+N+ ++LF DF +S K+F
Sbjct: 123 SQDVERHPIPQHLMNSTSEVLF--DFIASSLKQF 154
>gnl|CDD|188697 cd08743, RGS_RGS14, Regulator of G protein signaling (RGS) domain
found in the RGS14 protein. RGS (Regulator of G-protein
Signaling) domain is an essential part of the RGS14
protein. RGS14 is a member of the RA/RGS subfamily of
RGS proteins family, a diverse group of multifunctional
proteins that regulate cellular signaling events
downstream of G-protein coupled receptors (GPCRs). As a
major G-protein regulator, RGS domain containing
proteins are involved in many crucial cellular processes
such as regulation of intracellular trafficking, glial
differentiation, embryonic axis formation, skeletal and
muscle development, and cell migration during early
embryogenesis. RGS14 belong to the R12 RGS subfamily,
which includes RGS10 and RGS12, all of which are highly
selective for G-alpha-i1 over G-alpha-q. RGS14 binds
and regulates the subcellular localization and
activities of H-Ras and Raf kinases in cells and
thereby integrates G protein and Ras/Raf signaling
pathways.
Length = 129
Score = 28.1 bits (62), Expect = 1.0
Identities = 17/36 (47%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 85 FSRLLNNPLLQTYLPNSTKKIEFHQELLVLFWKMCD 120
F RLL +PL Y KK EF E V FWK C+
Sbjct: 11 FERLLQDPLGVEYFTEFLKK-EFSAE-NVNFWKACE 44
>gnl|CDD|188661 cd08706, RGS_R12-like, Regulator of G protein signaling (RGS)
domain found in the R12 subfamily of proteins. The RGS
(Regulator of G-protein Signaling) domain is an
essential part of the R12 (Neuronal RGS) protein
subfamily of the RGS protein family, a diverse group of
multifunctional proteins that regulate cellular
signaling events downstream of G-protein coupled
receptors (GPCRs). RGS proteins play a critical
regulatory role as GTPase activating proteins (GAPs) of
the heterotrimeric G-protein G-alpha-subunits.
Deactivation of G-protein signaling, controlled by RGS
domain, accelerates GTPase activity of the alpha subunit
by hydrolysis of GTP to GDP that results in
reassociation of the alpha-subunit with the
beta-gamma-dimer and thereby inhibition of downstream
activity. As a major G-protein regulator, RGS domain
containing proteins are involved in many crucial
cellular processes such as regulation of intracellular
trafficking, glial differentiation, embryonic axis
formation, skeletal and muscle development, and cell
migration during early embryogenesis. The R12 RGS
subfamily includes RGS10, RGS12 and RGS14 all of which
are highly selective for G-alpha-i1 over G-alpha-q.
Length = 113
Score = 26.9 bits (60), Expect = 2.1
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 85 FSRLLNNPLLQTYLPNSTKKIEFHQELLVLFWKMCDYNKH 124
F RLL +P+ Y KK EF +E +LFW+ C+ K
Sbjct: 1 FERLLQDPVGVKYFTEFLKK-EFSEEN-ILFWQACEKFKK 38
>gnl|CDD|222883 PHA02572, nrdA, ribonucleoside-diphosphate reductase subunit alpha;
Provisional.
Length = 753
Score = 27.4 bits (61), Expect = 2.3
Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 4/65 (6%)
Query: 66 INYL-SRIHRDEDFQFVLAGFSRLLNNPLLQTYLPNSTKKIEFHQELLVLFWKMCDYNKH 124
I YL S I D DF+F AG +L L+Q ST +I + + M +
Sbjct: 126 ITYLESFIDHDRDFEFTYAGAMQLKEKYLVQD---RSTGEIYETPQFAYMLIAMALHQDE 182
Query: 125 NKESR 129
KE R
Sbjct: 183 PKEDR 187
>gnl|CDD|185363 PRK15466, PRK15466, carboxysome structural protein EutK;
Provisional.
Length = 166
Score = 26.9 bits (59), Expect = 2.6
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 75 DEDFQFVLAGFSRLLNNPLLQTYLPNSTKKIEFHQELLVLF 115
D+D Q+++ GF+R P+ + P E ELL L
Sbjct: 80 DDDTQWLVTGFNRQPKQPVKEPDAPVIVA--ESADELLALL 118
>gnl|CDD|161973 TIGR00639, PurN, phosphoribosylglycinamide formyltransferase,
formyltetrahydrofolate-dependent. This model describes
phosphoribosylglycinamide formyltransferase (GAR
transformylase), one of several proteins in
formyl_transf (Pfam family pfam00551). This enzyme uses
formyl tetrahydrofolate as a formyl group donor to
produce 5'-phosphoribosyl-N-formylglycinamide. PurT, a
different GAR transformylase, uses ATP and formate
rather than formyl tetrahydrofolate. Experimental proof
includes complementation of E. coli purN mutants by
orthologs from vertebrates (where it is a domain of a
multifunctional protein), Bacillus subtilis, and
Arabidopsis. No archaeal example was detected. In
phylogenetic analyses, the member from Saccharomyces
cerevisiae shows a long branch length but membership in
the family, while the formyltetrahydrofolate
deformylases form a closely related outgroup [Purines,
pyrimidines, nucleosides, and nucleotides, Purine
ribonucleotide biosynthesis].
Length = 190
Score = 25.8 bits (57), Expect = 6.7
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
Query: 81 VLAGFSRLLNNPLLQTYLPNSTKKIEFHQELLVLF 115
VLAGF R+L L + + + + H LL F
Sbjct: 84 VLAGFMRILGPTFLSRF---AGRILNIHPSLLPAF 115
>gnl|CDD|235544 PRK05647, purN, phosphoribosylglycinamide formyltransferase;
Reviewed.
Length = 200
Score = 25.5 bits (57), Expect = 9.2
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 81 VLAGFSRLLNNPLLQTY 97
VLAGF R+L + Y
Sbjct: 85 VLAGFMRILGPTFVSAY 101
>gnl|CDD|99991 cd03821, GT1_Bme6_like, This family is most closely related to the
GT1 family of glycosyltransferases. Bme6 in Brucella
melitensis has been shown to be involved in the
biosynthesis of a polysaccharide.
Length = 375
Score = 25.3 bits (56), Expect = 9.8
Identities = 10/41 (24%), Positives = 14/41 (34%), Gaps = 17/41 (41%)
Query: 61 QDNLFINYLSRIH-----------------RDEDFQFVLAG 84
D I +L R+H R D+ V+AG
Sbjct: 201 PDKRIILFLGRLHPKKGLDLLIEAFAKLAERFPDWHLVIAG 241
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.138 0.417
Gapped
Lambda K H
0.267 0.0702 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,403,397
Number of extensions: 550662
Number of successful extensions: 461
Number of sequences better than 10.0: 1
Number of HSP's gapped: 458
Number of HSP's successfully gapped: 22
Length of query: 129
Length of database: 10,937,602
Length adjustment: 86
Effective length of query: 43
Effective length of database: 7,123,158
Effective search space: 306295794
Effective search space used: 306295794
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.2 bits)