RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8934
         (129 letters)



>d1hn0a4 b.30.5.2 (A:619-899) Chondroitin ABC lyase I {Proteus
          vulgaris [TaxId: 585]}
          Length = 281

 Score = 29.1 bits (65), Expect = 0.14
 Identities = 7/32 (21%), Positives = 13/32 (40%), Gaps = 1/32 (3%)

Query: 61 QDNLFINYLSR-IHRDEDFQFVLAGFSRLLNN 91
          Q     N  +  IHR +D    L  ++  + +
Sbjct: 2  QGFYAFNGGAFGIHRWQDKMVTLKAYNTNVWS 33


>d1vhra_ c.45.1.1 (A:) VH1-related dual-specificity phosphatase,
          VHR {Human (Homo sapiens) [TaxId: 9606]}
          Length = 178

 Score = 26.7 bits (58), Expect = 0.68
 Identities = 13/72 (18%), Positives = 27/72 (37%), Gaps = 4/72 (5%)

Query: 20 ICDLLFCPDFTVASNKKFNSRKKMDYILNCTLSFGGLKLGTQDNLF----INYLSRIHRD 75
          +   ++  + +VA +     +  + ++LN       + + T  N +    I YL     D
Sbjct: 26 VTPRIYVGNASVAQDIPKLQKLGITHVLNAAEGRSFMHVNTNANFYKDSGITYLGIKAND 85

Query: 76 EDFQFVLAGFSR 87
               + A F R
Sbjct: 86 TQEFNLSAYFER 97


>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase
           {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 477

 Score = 27.2 bits (60), Expect = 0.68
 Identities = 7/52 (13%), Positives = 20/52 (38%), Gaps = 1/52 (1%)

Query: 64  LFINYLSRIHRDEDFQFVLAGFSRLLN-NPLLQTYLPNSTKKIEFHQELLVL 114
             I+ LS    ++  + V    + LL+ +      +    +  +  ++L  +
Sbjct: 78  PLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDV 129


>d1rwha3 b.30.5.2 (A:373-644) Chondroitinase AC {Arthrobacter
          aurescens [TaxId: 43663]}
          Length = 272

 Score = 25.7 bits (56), Expect = 2.1
 Identities = 5/20 (25%), Positives = 8/20 (40%)

Query: 72 IHRDEDFQFVLAGFSRLLNN 91
          +HR   +   LA  S  +  
Sbjct: 14 MHRGPGWALSLALSSNRIAW 33


>d1dk8a_ a.91.1.1 (A:) Axin RGS-homologous domain {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 147

 Score = 25.0 bits (54), Expect = 2.7
 Identities = 9/45 (20%), Positives = 16/45 (35%), Gaps = 2/45 (4%)

Query: 63  NLFINYLSRIHRDEDFQFVLA--GFSRLLNNPLLQTYLPNSTKKI 105
           +LF  +L +    +   F  A  GF +L      +       + I
Sbjct: 27  SLFRTFLKQEGCADLLDFWFACTGFRKLEPCDSNEEKRLKLARAI 71


>d1cb8a3 b.30.5.2 (A:336-599) Chondroitinase AC {Pedobacter
          heparinus (Flavobacterium heparinum) [TaxId: 984]}
          Length = 264

 Score = 24.8 bits (54), Expect = 3.2
 Identities = 3/20 (15%), Positives = 6/20 (30%)

Query: 72 IHRDEDFQFVLAGFSRLLNN 91
           H    + F +   S+    
Sbjct: 15 QHLRPAYSFNVRMVSKRTRR 34


>d1x1ia3 b.30.5.2 (A:387-659) Xanthan lyase {Bacillus sp. gl1
          [TaxId: 84635]}
          Length = 273

 Score = 24.9 bits (54), Expect = 3.6
 Identities = 4/20 (20%), Positives = 10/20 (50%)

Query: 72 IHRDEDFQFVLAGFSRLLNN 91
          + +   F   LA +S  +++
Sbjct: 14 VLQRPGFALGLALYSTRISS 33


>d1n7oa3 b.30.5.2 (A:541-814) Hyaluronate lyase {Streptococcus
          pneumoniae [TaxId: 1313]}
          Length = 274

 Score = 23.7 bits (51), Expect = 8.6
 Identities = 6/20 (30%), Positives = 10/20 (50%)

Query: 72 IHRDEDFQFVLAGFSRLLNN 91
           + ++ F F L+ FS    N
Sbjct: 16 YNAEKGFGFGLSLFSSRTLN 35


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.138    0.417 

Gapped
Lambda     K      H
   0.267   0.0569    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 461,826
Number of extensions: 18850
Number of successful extensions: 57
Number of sequences better than 10.0: 1
Number of HSP's gapped: 57
Number of HSP's successfully gapped: 17
Length of query: 129
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 53
Effective length of database: 1,364,116
Effective search space: 72298148
Effective search space used: 72298148
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 48 (22.6 bits)