RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8937
(147 letters)
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 51.1 bits (123), Expect = 4e-09
Identities = 34/131 (25%), Positives = 44/131 (33%), Gaps = 31/131 (23%)
Query: 22 CKICGKHYSNSSNLKQHIR---------LIHLPGILFCPLCQKCFKNKLYLRRHVGTYTH 72
K C + +S L H+ H+ CP K FK K L H+ H
Sbjct: 28 KKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIR--VH 85
Query: 73 TPSYRSVPGASKPLHSLDARYCKI--CGKHYSNSSNLKQHIRLIHL---PGILFCPLCQK 127
T KP C CGK ++ S NLK H R H P C +
Sbjct: 86 T--------GEKPFP------CPFPGCGKIFARSENLKIHKR-THTGEKPFKCEFEGCDR 130
Query: 128 CFKNKLYLRRH 138
F N ++H
Sbjct: 131 RFANSSDRKKH 141
Score = 41.5 bits (98), Expect = 1e-05
Identities = 26/119 (21%), Positives = 35/119 (29%), Gaps = 14/119 (11%)
Query: 26 GKHYSNSSNLKQHIRL--IHLPGILF-CPLCQKCFKNKLYLRRHVGTYTHTPSYRSVPGA 82
G S+ +KQ + I + C + F L HV
Sbjct: 1 GSSGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPE------ 54
Query: 83 SKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHL---PGILFCPLCQKCFKNKLYLRRH 138
+ H C GK + L HIR +H P P C K F L+ H
Sbjct: 55 -QNNHVCYWEECPREGKSFKAKYKLVNHIR-VHTGEKPFPCPFPGCGKIFARSENLKIH 111
Score = 32.3 bits (74), Expect = 0.029
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 6/52 (11%)
Query: 25 CGKHYSNSSNLKQHIRLIHL---PGILFCPLCQKCFKNKLYLRRHVGTYTHT 73
CGK ++ S NLK H R H P C + F N ++H + HT
Sbjct: 98 CGKIFARSENLKIHKR-THTGEKPFKCEFEGCDRRFANSSDRKKH--MHVHT 146
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 49.0 bits (118), Expect = 8e-09
Identities = 30/97 (30%), Positives = 43/97 (44%), Gaps = 20/97 (20%)
Query: 22 CKICGKHYSNSSNLKQHIRLIHL---PGILFCPLCQKCFKNKLYLRRHVGTYTHTPSYRS 78
C+ICGK + + +L +H H P CP+C FK K + HV +H S
Sbjct: 10 CEICGKIFRDVYHLNRHKL-SHSGEKPYS--CPVCGLRFKRKDRMSYHV--RSHDGS--- 61
Query: 79 VPGASKPLHSLDARYCKICGKHYSNSSNLKQHIRLIH 115
KP C+ CGK +S +L HI+ +H
Sbjct: 62 ---VGKPYI------CQSCGKGFSRPDHLNGHIKQVH 89
Score = 32.5 bits (75), Expect = 0.011
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 6/48 (12%)
Query: 94 CKICGKHYSNSSNLKQHIRLIHL---PGILFCPLCQKCFKNKLYLRRH 138
C+ICGK + + +L +H H P CP+C FK K + H
Sbjct: 10 CEICGKIFRDVYHLNRHKL-SHSGEKPYS--CPVCGLRFKRKDRMSYH 54
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 48.3 bits (116), Expect = 2e-08
Identities = 29/125 (23%), Positives = 43/125 (34%), Gaps = 29/125 (23%)
Query: 22 CKICGKHYSNSSNLKQHIRLIHL---PGILFCPLCQKCFKNKLYLRRH-VGTYTHTPSYR 77
C C K + + LK H R H P CP C KC+ K L H +
Sbjct: 10 CPTCHKKFLSKYYLKVHNR-KHTGEKPFE--CPKCGKCYFRKENLLEHEARNCMNR---- 62
Query: 78 SVPGASKPLHSLDARY-CKICGKHYSNSSNLKQHIRLIHL---PGILFCPLCQKCFKNKL 133
+ + + C +C + + L+ H+ H P C C + F K
Sbjct: 63 ----SEQV-------FTCSVCQETFRRRMELRLHMV-SHTGEMP--YKCSSCSQQFMQKK 108
Query: 134 YLRRH 138
L+ H
Sbjct: 109 DLQSH 113
Score = 45.2 bits (108), Expect = 4e-07
Identities = 24/100 (24%), Positives = 39/100 (39%), Gaps = 25/100 (25%)
Query: 22 CKICGKHYSNSSNLKQHIRL--IHL---PGILFCPLCQKCFKNKLYLRRHVGTYTHTPSY 76
C CGK Y NL +H ++ C +CQ+ F+ ++ LR H +HT
Sbjct: 38 CPKCGKCYFRKENLLEHEARNCMNRSEQVFT--CSVCQETFRRRMELRLH--MVSHT--- 90
Query: 77 RSVPGASKPLHSLDARY-CKICGKHYSNSSNLKQHIRLIH 115
P Y C C + + +L+ H+ +H
Sbjct: 91 -----GEMP-------YKCSSCSQQFMQKKDLQSHMIKLH 118
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 44.3 bits (106), Expect = 3e-07
Identities = 36/98 (36%), Positives = 46/98 (46%), Gaps = 25/98 (25%)
Query: 22 CKICGKHYSNSSNLKQHIRLIHL---PGILFCPLCQKCFKNKLYLRRHVGTYTHTPSYRS 78
CKICGK + SS L H+ IH P C C K F K +++H T+ HT
Sbjct: 4 CKICGKSFKRSSTLSTHLL-IHSDTRPYP--CQYCGKRFHQKSDMKKH--TFIHT----- 53
Query: 79 VPGASKPLHSLDARY-CKICGKHYSNSSNLKQHIRLIH 115
KP + C++CGK +S SSNL H R H
Sbjct: 54 ---GEKP-------HKCQVCGKAFSQSSNLITHSR-KH 80
Score = 30.1 bits (69), Expect = 0.069
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 6/48 (12%)
Query: 94 CKICGKHYSNSSNLKQHIRLIHL---PGILFCPLCQKCFKNKLYLRRH 138
CKICGK + SS L H+ IH P C C K F K +++H
Sbjct: 4 CKICGKSFKRSSTLSTHLL-IHSDTRPYP--CQYCGKRFHQKSDMKKH 48
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double
helix, transcription/DNA complex; HET: DNA; 2.80A
{Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 44.1 bits (105), Expect = 3e-07
Identities = 13/66 (19%), Positives = 23/66 (34%), Gaps = 14/66 (21%)
Query: 50 CPLCQKCFKNKLYLRRHVGTYTHTPSYRSVPGASKPLHSLDARYCKICGKHYSNSSNLKQ 109
C +C + + + RH T K C C K ++ N+
Sbjct: 13 CKVCSRVYTHISNFCRHYVTSHKR--------NVKVYP------CPFCFKEFTRKDNMTA 58
Query: 110 HIRLIH 115
H+++IH
Sbjct: 59 HVKIIH 64
Score = 42.5 bits (101), Expect = 1e-06
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 22 CKICGKHYSNSSNLKQHIRLIHLPGI--LFCPLCQKCFKNKLYLRRH 66
CK+C + Y++ SN +H H + CP C K F K + H
Sbjct: 13 CKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAH 59
Score = 42.5 bits (101), Expect = 1e-06
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 94 CKICGKHYSNSSNLKQHIRLIHLPGI--LFCPLCQKCFKNKLYLRRH 138
CK+C + Y++ SN +H H + CP C K F K + H
Sbjct: 13 CKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAH 59
Score = 33.3 bits (77), Expect = 0.003
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 22 CKICGKHYSNSSNLKQHIRLIH 43
C C K ++ N+ H+++IH
Sbjct: 43 CPFCFKEFTRKDNMTAHVKIIH 64
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 44.4 bits (106), Expect = 3e-07
Identities = 19/94 (20%), Positives = 32/94 (34%), Gaps = 23/94 (24%)
Query: 22 CKICGKHYSNSSNLKQHIRLIHL---PGILFCPLCQKCFKNKLYLRRHVGTYTHTPSYRS 78
C+IC +++S S +L HIR H P C +C + F +RH P
Sbjct: 6 CRICMRNFSRSDHLTTHIR-THTGEKP--FACDICGRKFARSDERKRHRDIQHILP-IL- 60
Query: 79 VPGASKPLHSLDARYCKICGKHYSNSSNLKQHIR 112
+ S + +L+ +
Sbjct: 61 ---------------EDKVEELLSKNYHLENEVA 79
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 44.8 bits (107), Expect = 4e-07
Identities = 37/121 (30%), Positives = 46/121 (38%), Gaps = 26/121 (21%)
Query: 25 CGKHYSNSSNLKQHIRLIHL---PGILFCPLCQKCFKNKLYLRRHVGTYTHTPSYRSVPG 81
C K Y S+L+ H R H P C++ F L+RH HT
Sbjct: 14 CNKRYFKLSHLQMHSR-KHTGEKPYQCDFKDCERRFSRSDQLKRHQ--RRHT-------- 62
Query: 82 ASKPLHSLDARY-CKICGKHYSNSSNLKQHIRLIHL---PGILFCPLCQKCFKNKLYLRR 137
KP + CK C + +S S +LK H R H P P CQK F L R
Sbjct: 63 GVKP-------FQCKTCQRKFSRSDHLKTHTR-THTGEKPFSCRWPSCQKKFARSDELVR 114
Query: 138 H 138
H
Sbjct: 115 H 115
Score = 40.2 bits (95), Expect = 3e-05
Identities = 28/96 (29%), Positives = 39/96 (40%), Gaps = 25/96 (26%)
Query: 25 CGKHYSNSSNLKQHIRLIHL---PGILFCPLCQKCFKNKLYLRRHVGTYTHTPSYRSVPG 81
C + +S S LK+H R H P C CQ+ F +L+ H T THT
Sbjct: 44 CERRFSRSDQLKRHQR-RHTGVKPFQ--CKTCQRKFSRSDHLKTH--TRTHT-------- 90
Query: 82 ASKPLHSLDARYCKI--CGKHYSNSSNLKQHIRLIH 115
KP C+ C K ++ S L +H +H
Sbjct: 91 GEKPFS------CRWPSCQKKFARSDELVRHHN-MH 119
Score = 32.5 bits (75), Expect = 0.017
Identities = 19/48 (39%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 22 CKICGKHYSNSSNLKQHIRLIHL---PGILFCPLCQKCFKNKLYLRRH 66
CK C + +S S +LK H R H P P CQK F L RH
Sbjct: 69 CKTCQRKFSRSDHLKTHTR-THTGEKPFSCRWPSCQKKFARSDELVRH 115
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 44.3 bits (106), Expect = 5e-07
Identities = 27/98 (27%), Positives = 39/98 (39%), Gaps = 25/98 (25%)
Query: 22 CKICGKHYSNSSNLKQHIRLIHL---PGILFCPLCQKCFKNKLYLRRHVGTYTHTPSYRS 78
C++CGK +S LK H+R H P C C + L +H+ H+
Sbjct: 11 CEVCGKCFSRKDKLKTHMR-CHTGVKP--YKCKTCDYAAADSSSLNKHL--RIHS----- 60
Query: 79 VPGASKPLHSLDARY-CKICGKHYSNSSNLKQHIRLIH 115
+P + C+IC NSS L H+R H
Sbjct: 61 ---DERP-------FKCQICPYASRNSSQLTVHLR-SH 87
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A {Mus
musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A
1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A*
1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 43.6 bits (104), Expect = 7e-07
Identities = 29/94 (30%), Positives = 41/94 (43%), Gaps = 23/94 (24%)
Query: 25 CGKHYSNSSNLKQHIRLIHL---PGILFCPLCQKCFKNKLYLRRHVGTYTHTPSYRSVPG 81
C + +S S +L +HIR IH P C +C + F +L H THT
Sbjct: 12 CDRRFSQSGSLTRHIR-IHTGQKP--FQCRICMRNFSRSDHLTTH--IRTHT-------- 58
Query: 82 ASKPLHSLDARYCKICGKHYSNSSNLKQHIRLIH 115
KP C ICG+ ++ S K+H + IH
Sbjct: 59 GEKPFA------CDICGRKFARSDERKRHTK-IH 85
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 44.1 bits (105), Expect = 1e-06
Identities = 33/135 (24%), Positives = 43/135 (31%), Gaps = 30/135 (22%)
Query: 22 CKICGKHYSNSSNLKQHIRLIHLPG--------ILFCPLCQKCFKNKLYLRRHVGTYTHT 73
C + + + L HI H+ G C + FK + L H+ HT
Sbjct: 6 WDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHM--RRHT 63
Query: 74 PSYRSVPGASKPLHSLDARYCKI--CGKHYSNSSNLKQHIRLIH---LPGILFCPLCQKC 128
KP C C K YS NLK H+R H P + C K
Sbjct: 64 --------GEKPHK------CTFEGCRKSYSRLENLKTHLR-SHTGEKPYMCEHEGCSKA 108
Query: 129 FKNKLYLRRHVISFH 143
F N +H H
Sbjct: 109 FSNASDRAKHQNRTH 123
Score = 42.6 bits (101), Expect = 5e-06
Identities = 28/96 (29%), Positives = 40/96 (41%), Gaps = 22/96 (22%)
Query: 25 CGKHYSNSSNLKQHIRLIH---LPGILFCPLCQKCFKNKLYLRRHVGTYTHTPSYRSVPG 81
C K YS NLK H+R H P + C K F N +H TH+
Sbjct: 75 CRKSYSRLENLKTHLR-SHTGEKPYMCEHEGCSKAFSNASDRAKHQ-NRTHS-------- 124
Query: 82 ASKPLHSLDARYCKI--CGKHYSNSSNLKQHIRLIH 115
KP CK+ C K Y++ S+L++H++
Sbjct: 125 NEKPYV------CKLPGCTKRYTDPSSLRKHVK-TV 153
Score = 32.6 bits (75), Expect = 0.020
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 25 CGKHYSNSSNLKQHIRLIHL---PGILFCPLCQKCFKNKLYLRRHVGTYT 71
C K +SN+S+ +H H P + P C K + + LR+HV T
Sbjct: 105 CSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVH 154
Score = 28.3 bits (64), Expect = 0.67
Identities = 8/24 (33%), Positives = 16/24 (66%), Gaps = 3/24 (12%)
Query: 22 CKI--CGKHYSNSSNLKQHIRLIH 43
CK+ C K Y++ S+L++H++
Sbjct: 131 CKLPGCTKRYTDPSSLRKHVK-TV 153
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 44.4 bits (106), Expect = 2e-06
Identities = 45/124 (36%), Positives = 53/124 (42%), Gaps = 30/124 (24%)
Query: 22 CKICGKHYSNSSNLKQHIRLIHL---PGILFCPLCQKCFKNKLYLRRHVGTYTHTPSYRS 78
C CGK +S S +L +H R H P CP C K F +K L RH THT
Sbjct: 24 CPECGKSFSRSDHLAEHQR-THTGEKPYK--CPECGKSFSDKKDLTRH--QRTHT----- 73
Query: 79 VPGASKPLHSLDARY-CKICGKHYSNSSNLKQHIRLIHL---PGILFCPLCQKCFKNKLY 134
KP Y C CGK +S +NL+ H R H P CP C K F +
Sbjct: 74 ---GEKP-------YKCPECGKSFSQRANLRAHQR-THTGEKPYA--CPECGKSFSQLAH 120
Query: 135 LRRH 138
LR H
Sbjct: 121 LRAH 124
Score = 42.4 bits (101), Expect = 9e-06
Identities = 43/124 (34%), Positives = 49/124 (39%), Gaps = 30/124 (24%)
Query: 22 CKICGKHYSNSSNLKQHIRLIHL---PGILFCPLCQKCFKNKLYLRRHVGTYTHTPSYRS 78
C CGK +S +NL+ H R H P CP C K F +LR H THT
Sbjct: 80 CPECGKSFSQRANLRAHQR-THTGEKPYA--CPECGKSFSQLAHLRAH--QRTHT----- 129
Query: 79 VPGASKPLHSLDARY-CKICGKHYSNSSNLKQHIRLIHL---PGILFCPLCQKCFKNKLY 134
KP Y C CGK +S NL H R H P CP C K F +
Sbjct: 130 ---GEKP-------YKCPECGKSFSREDNLHTHQR-THTGEKPYK--CPECGKSFSRRDA 176
Query: 135 LRRH 138
L H
Sbjct: 177 LNVH 180
Score = 39.7 bits (94), Expect = 7e-05
Identities = 32/98 (32%), Positives = 38/98 (38%), Gaps = 25/98 (25%)
Query: 22 CKICGKHYSNSSNLKQHIRLIHL---PGILFCPLCQKCFKNKLYLRRHVGTYTHTPSYRS 78
C CGK +S ++L+ H R H P CP C K F + L H THT
Sbjct: 108 CPECGKSFSQLAHLRAHQR-THTGEKPYK--CPECGKSFSREDNLHTH--QRTHT----- 157
Query: 79 VPGASKPLHSLDARY-CKICGKHYSNSSNLKQHIRLIH 115
KP Y C CGK +S L H R H
Sbjct: 158 ---GEKP-------YKCPECGKSFSRRDALNVHQR-TH 184
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 44.1 bits (105), Expect = 2e-06
Identities = 28/129 (21%), Positives = 43/129 (33%), Gaps = 28/129 (21%)
Query: 25 CGKHYSNSSNLKQHIRLIH-----LPGILFCPLCQKCFKNKLYLRRHVGTYTHTPSYRSV 79
C ++ +N+K+H + C K FK L+ H ++HT
Sbjct: 80 CDLRFTTKANMKKHFN-RFHNIKICVYVCHFENCGKAFKKHNQLKVH--QFSHT------ 130
Query: 80 PGASKPLHSLDARY-CK--ICGKHYSNSSNLKQHIRLIHLPGILF-CPLCQKCFKNKLYL 135
P Y C C K +S S LK+H + +H C K
Sbjct: 131 --QQLP-------YECPHEGCDKRFSLPSRLKRHEK-VHAGYPCKKDDSCSFVGKTWTLY 180
Query: 136 RRHVISFHE 144
+HV H+
Sbjct: 181 LKHVAECHQ 189
Score = 37.6 bits (88), Expect = 5e-04
Identities = 28/125 (22%), Positives = 43/125 (34%), Gaps = 30/125 (24%)
Query: 25 CGKHYSNSSNLKQHIRLIHL---PGILFCPLCQKCFKNKLYLRRHVGTYTHTPSYRSVPG 81
CG Y+ + L+ H+ H P C+K F + +L RH THT
Sbjct: 20 CGAAYNKNWKLQAHLC-KHTGEKPFPCKEEGCEKGFTSLHHLTRHS--LTHT-------- 68
Query: 82 ASKPLHSLDARY-CK--ICGKHYSNSSNLKQHIRLIH-----LPGILFCPLCQKCFKNKL 133
K + C C ++ +N+K+H + C K FK
Sbjct: 69 GEKN-------FTCDSDGCDLRFTTKANMKKHFN-RFHNIKICVYVCHFENCGKAFKKHN 120
Query: 134 YLRRH 138
L+ H
Sbjct: 121 QLKVH 125
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 41.6 bits (98), Expect = 4e-06
Identities = 16/66 (24%), Positives = 23/66 (34%), Gaps = 7/66 (10%)
Query: 22 CKICGKHYSNSSNLKQHIRLIHLPGILF----CPLCQKCFKNKLYLRRHVGTYTHTPSYR 77
C+ICG ++L H R H + C C K F+ + H P+
Sbjct: 10 CEICGFTCRQKASLNWHQR-KHAETVAALRFPCEFCGKRFEKPDSVAAHR--SKSHPALL 66
Query: 78 SVPGAS 83
P S
Sbjct: 67 LAPQES 72
Score = 40.9 bits (96), Expect = 8e-06
Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 5/54 (9%)
Query: 94 CKICGKHYSNSSNLKQHIRLIHLPGILF----CPLCQKCFKNKLYLRRHVISFH 143
C+ICG ++L H R H + C C K F+ + H H
Sbjct: 10 CEICGFTCRQKASLNWHQR-KHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSH 62
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 42.5 bits (101), Expect = 4e-06
Identities = 35/122 (28%), Positives = 49/122 (40%), Gaps = 23/122 (18%)
Query: 22 CKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVGTYTHTPSYRSVPG 81
K C K + ++S +++H+ H P + C C K F L+RH HT
Sbjct: 10 HKGCTKMFRDNSAMRKHLH-THGPRVHVCAECGKAFVESSKLKRHQL--VHT-------- 58
Query: 82 ASKPLHSLDARYCKI--CGKHYSNSSNLKQHIRLIHL---PGILFCPLCQKCFKNKLYLR 136
KP C CGK +S NL+ H+R IH P + C K F L+
Sbjct: 59 GEKPFQ------CTFEGCGKRFSLDFNLRTHVR-IHTGDRPYVCPFDGCNKKFAQSTNLK 111
Query: 137 RH 138
H
Sbjct: 112 SH 113
Score = 41.0 bits (97), Expect = 1e-05
Identities = 31/99 (31%), Positives = 38/99 (38%), Gaps = 23/99 (23%)
Query: 22 CKICGKHYSNSSNLKQHIRLIHL---PGILFCPLCQKCFKNKLYLRRHVGTYTHTPSYRS 78
C CGK + SS LK+H +H P C K F LR HV HT
Sbjct: 37 CAECGKAFVESSKLKRHQL-VHTGEKPFQCTFEGCGKRFSLDFNLRTHV--RIHT----- 88
Query: 79 VPGASKPLHSLDARYCKI--CGKHYSNSSNLKQHIRLIH 115
+P C C K ++ S+NLK HI H
Sbjct: 89 ---GDRPYV------CPFDGCNKKFAQSTNLKSHIL-TH 117
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 42.1 bits (98), Expect = 5e-06
Identities = 16/112 (14%), Positives = 29/112 (25%), Gaps = 11/112 (9%)
Query: 30 SNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVGTYTHTPSYRSVPGASKPLHSL 89
S+ S+ K + + C C + + L H+ H
Sbjct: 2 SSGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDN------- 54
Query: 90 DARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVIS 141
+L + +L C C F++ L H+I
Sbjct: 55 ----NNPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIK 102
Score = 34.4 bits (78), Expect = 0.003
Identities = 19/110 (17%), Positives = 27/110 (24%), Gaps = 19/110 (17%)
Query: 4 YRSVPGGSKPLHSLDARYCKICGKHYSNSSNLKQHIRLI-HLPGILFCPLCQKCFKNKLY 62
Y S+ G+ CK C Y L H+ H +
Sbjct: 10 YGSIFTGASKFR------CKDCSAAYDTLVELTVHMNETGHYRDD--NHETDNNNPKRWS 61
Query: 63 LRRHVGTYTHTPSYRSVPGASKPLHSLDARYCKICGKHYSNSSNLKQHIR 112
R A K L C CG + + +L H+
Sbjct: 62 KPRKRSLLEMEGK----EDAQKVLK------CMYCGHSFESLQDLSVHMI 101
Score = 28.2 bits (62), Expect = 0.60
Identities = 8/51 (15%), Positives = 14/51 (27%)
Query: 22 CKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVGTYTH 72
+L + +L C C F++ L H+ H
Sbjct: 55 NNPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKH 105
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 41.7 bits (99), Expect = 5e-06
Identities = 31/98 (31%), Positives = 43/98 (43%), Gaps = 25/98 (25%)
Query: 22 CKICGKHYSNSSNLKQHIRLIHL---PGILFCPLCQKCFKNKLYLRRHVGTYTHTPSYRS 78
CK CG+H++ S NL H R H P C +C K F+ + +LR H Y H+
Sbjct: 20 CKFCGRHFTKSYNLLIHER-THTDERPYT--CDICHKAFRRQDHLRDH--RYIHS----- 69
Query: 79 VPGASKPLHSLDARY-CKICGKHYSNSSNLKQHIRLIH 115
KP + C+ CGK + S L H +H
Sbjct: 70 ---KEKP-------FKCQECGKGFCQSRTLAVHKT-LH 96
Score = 30.5 bits (70), Expect = 0.065
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 6/48 (12%)
Query: 94 CKICGKHYSNSSNLKQHIRLIHL---PGILFCPLCQKCFKNKLYLRRH 138
CK CG+H++ S NL H R H P C +C K F+ + +LR H
Sbjct: 20 CKFCGRHFTKSYNLLIHER-THTDERPYT--CDICHKAFRRQDHLRDH 64
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 41.0 bits (97), Expect = 8e-06
Identities = 27/98 (27%), Positives = 37/98 (37%), Gaps = 21/98 (21%)
Query: 22 CKICGKHYSNSSNLKQHIRLIH---LPGILFCPLCQKCFKNKLYLRRHVGTYTHTPSYRS 78
CGK Y+ SS+LK H+R H P C F L RH HT
Sbjct: 10 YAGCGKTYTKSSHLKAHLR-THTGEKPYHCDWDGCGWKFARSDELTRHYR--KHT----- 61
Query: 79 VPGASKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHL 116
+P C+ C + +S S +L H++ H
Sbjct: 62 ---GHRPFQ------CQKCDRAFSRSDHLALHMK-RHF 89
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 77
Score = 40.2 bits (95), Expect = 1e-05
Identities = 15/94 (15%), Positives = 21/94 (22%), Gaps = 42/94 (44%)
Query: 22 CKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVGTYTHTPSYRSVPG 81
C IC ++ S +K HI
Sbjct: 18 CYICHARFTQSGTMKMHIL------------------------------QKHT------E 41
Query: 82 ASKPLHSLDARYCKICGKHYSNSSNLKQHIRLIH 115
H C C + S+L H+R H
Sbjct: 42 NVAKFH------CPHCDTVIARKSDLGVHLRKQH 69
Score = 39.8 bits (94), Expect = 2e-05
Identities = 14/53 (26%), Positives = 19/53 (35%), Gaps = 4/53 (7%)
Query: 94 CKICGKHYSNSSNLKQHIRLIHLPGIL---FCPLCQKCFKNKLYLRRHVISFH 143
C IC ++ S +K HI + CP C K L H+ H
Sbjct: 18 CYICHARFTQSGTMKMHIL-QKHTENVAKFHCPHCDTVIARKSDLGVHLRKQH 69
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 40.3 bits (95), Expect = 2e-05
Identities = 23/91 (25%), Positives = 35/91 (38%), Gaps = 20/91 (21%)
Query: 25 CGKHYSNSSNLKQHIRLIH---LPGILFCPLCQKCFKNKLYLRRHVGTYTHTPSYRSVPG 81
C K Y+ SS+LK H+R H P C F L RH +T ++
Sbjct: 23 CTKVYTKSSHLKAHLR-THTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQ---- 77
Query: 82 ASKPLHSLDARYCKICGKHYSNSSNLKQHIR 112
C +C + +S S +L H++
Sbjct: 78 ------------CGVCNRSFSRSDHLALHMK 96
Score = 31.1 bits (71), Expect = 0.043
Identities = 12/48 (25%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Query: 25 CGKHYSNSSNLKQHIRLIHLPGILF-CPLCQKCFKNKLYLRRHVGTYT 71
C ++ S L +H R H F C +C + F +L H+ +
Sbjct: 53 CDWRFARSDELTRHYR-KHTGAKPFQCGVCNRSFSRSDHLALHMKRHQ 99
Score = 27.2 bits (61), Expect = 1.00
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 22 CKICGKHYSNSSNLKQHIR 40
C +C + +S S +L H++
Sbjct: 78 CGVCNRSFSRSDHLALHMK 96
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 39.3 bits (93), Expect = 4e-05
Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 24/91 (26%)
Query: 25 CGKHYSNSSNLKQHIRLIHL---PGILFCPLCQKCFKNKLYLRRHVGTYTHTPSYRSVPG 81
CGK +++ S +H+ +HL P C +C K FK K +L H HT
Sbjct: 15 CGKSFTHKSQRDRHMS-MHLGLRPYG--CGVCGKKFKMKHHLVGH--MKIHT-------- 61
Query: 82 ASKPLHSLDARY-CKICGKHYSNSSNLKQHI 111
KP Y C IC K + + +H+
Sbjct: 62 GIKP-------YECNICAKRFMWRDSFHRHV 85
Score = 34.7 bits (81), Expect = 0.002
Identities = 19/90 (21%), Positives = 32/90 (35%), Gaps = 26/90 (28%)
Query: 22 CKICGKHYSNSSNLKQHIRLIHL---PGILFCPLCQKCFKNKLYLRRHVGTYTHTPSYRS 78
C +CGK + +L H++ IH P C +C K F + RHV +
Sbjct: 40 CGVCGKKFKMKHHLVGHMK-IHTGIKP--YECNICAKRFMWRDSFHRHV----TS----- 87
Query: 79 VPGASKPLHSLDARY-CKICGKHYSNSSNL 107
+K Y ++ + +S
Sbjct: 88 ---CTKS-------YEAAKAEQNTTEASGP 107
Score = 28.2 bits (64), Expect = 0.47
Identities = 8/22 (36%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 94 CKICGKHYSNSSNLKQHIRLIH 115
C +CGK + +L H++ IH
Sbjct: 40 CGVCGKKFKMKHHLVGHMK-IH 60
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 39.5 bits (91), Expect = 6e-05
Identities = 15/93 (16%), Positives = 31/93 (33%), Gaps = 18/93 (19%)
Query: 23 KICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVGTYTHTPSYRSVPGA 82
I + S+ + CPLC F + + L++H+ H
Sbjct: 50 LIHNPQLLDESSYLYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYTEH---------- 99
Query: 83 SKPLHSLDARYCKICGKHYSNSSNLKQHIRLIH 115
+ C +C K ++++ + H+ H
Sbjct: 100 --------TKVCPVCKKEFTSTDSALDHVCKKH 124
Score = 38.8 bits (89), Expect = 1e-04
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 93 YCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVISFH 143
C +C +S+S +LKQHIR + CP+C+K F + HV H
Sbjct: 76 VCPLCLMPFSSSVSLKQHIRYTEHTKV--CPVCKKEFTSTDSALDHVCKKH 124
Score = 29.1 bits (64), Expect = 0.30
Identities = 12/77 (15%), Positives = 27/77 (35%), Gaps = 2/77 (2%)
Query: 63 LRRHVGTYTHTPSYRSVPGASKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFC 122
+ HV ++ P + + ++ I + S+ + C
Sbjct: 20 IFIHVTLEELKRYHQLTPEQKRLIRAIVKT--LIHNPQLLDESSYLYRLLASKAISQFVC 77
Query: 123 PLCQKCFKNKLYLRRHV 139
PLC F + + L++H+
Sbjct: 78 PLCLMPFSSSVSLKQHI 94
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692,
structural genomics, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 79
Score = 35.6 bits (83), Expect = 7e-04
Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 5/52 (9%)
Query: 25 CGKHYSNSSNLKQHIRLIHL---PGILFCPLCQKCFKNKLYLRRHVGTYTHT 73
CG+ +SN L H + H+ P C K F K +L+ H H+
Sbjct: 15 CGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEH--MKLHS 64
Score = 34.4 bits (80), Expect = 0.001
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 97 CGKHYSNSSNLKQHIRLIHL---PGILFCPLCQKCFKNKLYLRRH 138
CG+ +SN L H + H+ P C K F K +L+ H
Sbjct: 15 CGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEH 59
Score = 30.6 bits (70), Expect = 0.050
Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 18/68 (26%)
Query: 50 CPLCQKCFKNKLYLRRHVGTYTHTPSYRSVPGASKPLHSLDARYCK--ICGKHYSNSSNL 107
P C + F N+ YL H Y H K C CGK ++ +L
Sbjct: 12 FPGCGRIFSNRQYLNHHK-KYQHI--------HQKSFS------CPEPACGKSFNFKKHL 56
Query: 108 KQHIRLIH 115
K+H++ +H
Sbjct: 57 KEHMK-LH 63
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 35.3 bits (82), Expect = 0.001
Identities = 19/97 (19%), Positives = 28/97 (28%), Gaps = 20/97 (20%)
Query: 22 CKICGKHYSNSSNLKQHIRLIH---LPGILFCPLCQKCFKNKLYLRRHVGTYTHTPSYRS 78
+ CGK + + LK H H LP C K F L+RH + P +
Sbjct: 6 FENCGKAFKKHNQLKVHQF-SHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKK- 63
Query: 79 VPGASKPLHSLDARYCKICGKHYSNSSNLKQHIRLIH 115
C + +H+ H
Sbjct: 64 ---------------DDSCSFVGKTWTLYLKHVAECH 85
Score = 33.7 bits (78), Expect = 0.003
Identities = 13/48 (27%), Positives = 18/48 (37%), Gaps = 2/48 (4%)
Query: 97 CGKHYSNSSNLKQHIRLIHLPGILF-CPLCQKCFKNKLYLRRHVISFH 143
C K +S S LK+H + +H C K +HV H
Sbjct: 39 CDKRFSLPSRLKRHEK-VHAGYPCKKDDSCSFVGKTWTLYLKHVAECH 85
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 34.1 bits (79), Expect = 0.001
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 81 GASKPLHSLDARY-CKICGKHYSNSSNLKQHIRLIH 115
G+S S+ Y C+ CGK +S +L HI+ +H
Sbjct: 1 GSSGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVH 36
Score = 33.3 bits (77), Expect = 0.003
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 9 GGSKPLHSLDARY-CKICGKHYSNSSNLKQHIRLIH 43
G S S+ Y C+ CGK +S +L HI+ +H
Sbjct: 1 GSSGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVH 36
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 34.0 bits (79), Expect = 0.002
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Query: 94 CKICGKHYSNSSNLKQHIRLIHL---PGILFCPLCQKCFKNKLYLRRHVISFH 143
C++C + ++ +LK+H R H P C LC + F + L RH H
Sbjct: 5 CEVCTRAFARQEHLKRHYR-SHTNEKP--YPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 34.0 bits (79), Expect = 0.002
Identities = 16/94 (17%), Positives = 30/94 (31%), Gaps = 44/94 (46%)
Query: 22 CKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVGTYTHTPSYRSVPG 81
C++C + ++ +LK+H R +HT
Sbjct: 5 CEVCTRAFARQEHLKRHYR------------------------------SHT-------- 26
Query: 82 ASKPLHSLDARYCKICGKHYSNSSNLKQHIRLIH 115
KP C +C + ++ L +H + IH
Sbjct: 27 NEKPYP------CGLCNRAFTRRDLLIRHAQKIH 54
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 34.9 bits (79), Expect = 0.002
Identities = 18/107 (16%), Positives = 35/107 (32%), Gaps = 21/107 (19%)
Query: 10 GSKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVGT 69
G+ P+ + + C++C S+ H RL CP C F + + H
Sbjct: 7 GASPVENKEVYQCRLCNAKLSSLLEQGSHERLCR--NAAVCPYCSLRFFSPELKQEHES- 63
Query: 70 YTHTPSYRSVPGASKPLHSLDARY-CKICGKHYSNSSNLKQHIRLIH 115
+ C C + + +S ++ +H +H
Sbjct: 64 -----------------KCEYKKLTCLECMRTFKSSFSIWRHQVEVH 93
Score = 33.7 bits (76), Expect = 0.005
Identities = 17/108 (15%), Positives = 29/108 (26%), Gaps = 19/108 (17%)
Query: 36 KQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVGTYTHTPSYRSVPGASKPLHSLDARYCK 95
+ + C LC + L H + A C
Sbjct: 5 SSGASPVENKEVYQCRLCNAKLSSLLEQGSHERLCRN------------------AAVCP 46
Query: 96 ICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVISFH 143
C + + ++H L C C + FK+ + RH + H
Sbjct: 47 YCSLRFFSPELKQEH-ESKCEYKKLTCLECMRTFKSSFSIWRHQVEVH 93
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 34.6 bits (79), Expect = 0.002
Identities = 17/62 (27%), Positives = 23/62 (37%), Gaps = 11/62 (17%)
Query: 22 CKICGKHYSNSSNLKQHIRLIHLPGILF---------CPLCQKCFKNKLYLRRHVGTYTH 72
K C + +S L H+ + H+ G CP K FK K L H+ H
Sbjct: 28 KKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHI--RVH 85
Query: 73 TP 74
T
Sbjct: 86 TG 87
Score = 34.2 bits (78), Expect = 0.003
Identities = 15/55 (27%), Positives = 21/55 (38%), Gaps = 9/55 (16%)
Query: 94 CKICGKHYSNSSNLKQHIRLIHLPGILF---------CPLCQKCFKNKLYLRRHV 139
K C + +S L H+ + H+ G CP K FK K L H+
Sbjct: 28 KKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHI 82
Score = 26.5 bits (58), Expect = 1.5
Identities = 17/63 (26%), Positives = 20/63 (31%), Gaps = 7/63 (11%)
Query: 50 CPLCQKCFKNKLYLRRHVGTYTHTPSYRSVPGASKPLHSLDARYCKICGKHYSNSSNLKQ 109
C + F L HV T H V G + H C GK + L
Sbjct: 28 KKSCDRTFSTMHELVTHV-TMEH------VGGPEQNNHVCYWEECPREGKSFKAKYKLVN 80
Query: 110 HIR 112
HIR
Sbjct: 81 HIR 83
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 33.5 bits (76), Expect = 0.003
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 20 RY-CKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVGTYTH 72
+Y C+ CG S LK+HIR C C FK K L +H+ + H
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAH 54
Score = 30.8 bits (69), Expect = 0.023
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 92 RY-CKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHV 139
+Y C+ CG S LK+HIR C C FK K L +H+
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHM 49
Score = 24.7 bits (53), Expect = 4.4
Identities = 13/63 (20%), Positives = 21/63 (33%), Gaps = 16/63 (25%)
Query: 50 CPLCQKCFKNKLYLRRHVGTYTHTPSYRSVPGASKPLHSLDARYCKICGKHYSNSSNLKQ 109
C C K L++H+ T+T Y C C + NL +
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYH----------------CTYCNFSFKTKGNLTK 47
Query: 110 HIR 112
H++
Sbjct: 48 HMK 50
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 32.5 bits (75), Expect = 0.004
Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 22 CKICGKHYSNSSNLKQHIRLIH 43
C+ICG + + LK H+R IH
Sbjct: 14 CEICGTRFRHLQTLKSHLR-IH 34
Score = 32.5 bits (75), Expect = 0.004
Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 94 CKICGKHYSNSSNLKQHIRLIH 115
C+ICG + + LK H+R IH
Sbjct: 14 CEICGTRFRHLQTLKSHLR-IH 34
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 32.8 bits (76), Expect = 0.005
Identities = 23/87 (26%), Positives = 30/87 (34%), Gaps = 23/87 (26%)
Query: 32 SSNLKQHIRLIHL---PGILFCPLCQKCFKNKLYLRRHVGTYTHTPSYRSVPGASKPLHS 88
+ H + P C CQ F+ K L H +T YR
Sbjct: 2 GHHHHHHSH-MTHSDKPYK--CDRCQASFRYKGNLASHKTVHTGEKPYR----------- 47
Query: 89 LDARYCKICGKHYSNSSNLKQHIRLIH 115
C ICG ++ +NLK H R IH
Sbjct: 48 -----CNICGAQFNRPANLKTHTR-IH 68
Score = 29.3 bits (67), Expect = 0.10
Identities = 12/48 (25%), Positives = 16/48 (33%), Gaps = 6/48 (12%)
Query: 94 CKICGKHYSNSSNLKQHIRLIHL---PGILFCPLCQKCFKNKLYLRRH 138
C C + NL H +H P C +C F L+ H
Sbjct: 20 CDRCQASFRYKGNLASHKT-VHTGEKP--YRCNICGAQFNRPANLKTH 64
Score = 29.3 bits (67), Expect = 0.11
Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 22 CKICGKHYSNSSNLKQHIRLIH 43
C ICG ++ +NLK H R IH
Sbjct: 48 CNICGAQFNRPANLKTHTR-IH 68
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 86
Score = 32.9 bits (76), Expect = 0.006
Identities = 13/49 (26%), Positives = 18/49 (36%), Gaps = 4/49 (8%)
Query: 22 CKICGKHYSNSSNLKQHIRLIHLPGILF----CPLCQKCFKNKLYLRRH 66
C C K + L H + H P + C C K F + + RH
Sbjct: 18 CSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARH 66
Score = 32.9 bits (76), Expect = 0.006
Identities = 13/49 (26%), Positives = 18/49 (36%), Gaps = 4/49 (8%)
Query: 94 CKICGKHYSNSSNLKQHIRLIHLPGILF----CPLCQKCFKNKLYLRRH 138
C C K + L H + H P + C C K F + + RH
Sbjct: 18 CSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARH 66
Score = 31.7 bits (73), Expect = 0.017
Identities = 13/67 (19%), Positives = 20/67 (29%), Gaps = 15/67 (22%)
Query: 50 CPLCQKCFKNKLYLRRHVGTYTHTPSYRSVPGASKPLHSLDARY-CKICGKHYSNSSNLK 108
C C K F+ K L H Y + C CGK ++ + +
Sbjct: 18 CSHCDKTFRQKQLLDMHFKRYHDPNF------VPAA-------FVCSKCGKTFTRRNTMA 64
Query: 109 QHIRLIH 115
+H
Sbjct: 65 RHAD-NC 70
Score = 27.1 bits (61), Expect = 1.00
Identities = 5/22 (22%), Positives = 10/22 (45%), Gaps = 1/22 (4%)
Query: 22 CKICGKHYSNSSNLKQHIRLIH 43
C CGK ++ + + +H
Sbjct: 50 CSKCGKTFTRRNTMARHAD-NC 70
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 31.4 bits (72), Expect = 0.014
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 22 CKICGKHYSNSSNLKQHIRLIH 43
C CGK + +++L +H R H
Sbjct: 15 CIECGKAFIQNTSLIRHWRYYH 36
Score = 31.4 bits (72), Expect = 0.014
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 94 CKICGKHYSNSSNLKQHIRLIH 115
C CGK + +++L +H R H
Sbjct: 15 CIECGKAFIQNTSLIRHWRYYH 36
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 33.3 bits (75), Expect = 0.022
Identities = 9/41 (21%), Positives = 13/41 (31%), Gaps = 1/41 (2%)
Query: 1 TPSYRSVPGGSKPLHSLDARY-CKICGKHYSNSSNLKQHIR 40
S G P S Y C +C + +L H+
Sbjct: 161 IVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVA 201
Score = 32.1 bits (72), Expect = 0.050
Identities = 8/42 (19%), Positives = 12/42 (28%), Gaps = 1/42 (2%)
Query: 72 HTPSYRSVPGASKPLHSLDARY-CKICGKHYSNSSNLKQHIR 112
S P S Y C +C + +L H+
Sbjct: 160 AIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVA 201
>3ung_C CMR2DHD; ferredoxin fold, nucleotide-binding, polymerase, CMR
complex function; HET: ADP; 2.31A {Pyrococcus furiosus}
PDB: 3ur3_C 4doz_A
Length = 693
Score = 33.1 bits (74), Expect = 0.025
Identities = 18/105 (17%), Positives = 34/105 (32%), Gaps = 3/105 (2%)
Query: 5 RSVPGGSKPLHSLDARYCKICGKHYSNSSNLKQH--IRLIHLPGILFCPLCQKCFKNKLY 62
+ + L C +CG++ + ++ H ++ + L CP+C ++
Sbjct: 253 KVTEERFEKSEQLKGWKCHVCGENLAIFGDMYDHDNLKSLWLDEEPLCPMCLIKRYYPVW 312
Query: 63 LRRHVGTYTHTPSYRSVPGASKPL-HSLDARYCKICGKHYSNSSN 106
+R G S V K D +Y K S
Sbjct: 313 IRSKTGQKIRFESVVDVALLYKNWRKIFDEKYGKDLVSKAREVSE 357
Score = 27.0 bits (58), Expect = 2.6
Identities = 10/64 (15%), Positives = 25/64 (39%), Gaps = 2/64 (3%)
Query: 77 RSVPGASKPLHSLDARYCKICGKHYSNSSNLKQH--IRLIHLPGILFCPLCQKCFKNKLY 134
+ + L C +CG++ + ++ H ++ + L CP+C ++
Sbjct: 253 KVTEERFEKSEQLKGWKCHVCGENLAIFGDMYDHDNLKSLWLDEEPLCPMCLIKRYYPVW 312
Query: 135 LRRH 138
+R
Sbjct: 313 IRSK 316
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 30.9 bits (71), Expect = 0.031
Identities = 14/53 (26%), Positives = 20/53 (37%), Gaps = 6/53 (11%)
Query: 22 CKICGKHYSNSSNLKQHIRLIHL---PGILFCPLCQKCFKNKLYLRRHVGTYT 71
C C S+ + L+ H R IH P C C K L +H+ +
Sbjct: 12 CSECSYSCSSKAALRIHER-IHCTDRP--FKCNYCSFDTKQPSNLSKHMKKFH 61
Score = 30.2 bits (69), Expect = 0.048
Identities = 14/67 (20%), Positives = 20/67 (29%), Gaps = 19/67 (28%)
Query: 50 CPLCQKCFKNKLYLRRHVGTYTHTPSYRSVPGASKPLHSLDARY-CKICGKHYSNSSNLK 108
C C +K LR H H +P + C C SNL
Sbjct: 12 CSECSYSCSSKAALRIHE--RIHC--------TDRP-------FKCNYCSFDTKQPSNLS 54
Query: 109 QHIRLIH 115
+H++
Sbjct: 55 KHMK-KF 60
Score = 29.4 bits (67), Expect = 0.098
Identities = 14/48 (29%), Positives = 18/48 (37%), Gaps = 6/48 (12%)
Query: 94 CKICGKHYSNSSNLKQHIRLIHL---PGILFCPLCQKCFKNKLYLRRH 138
C C S+ + L+ H R IH P C C K L +H
Sbjct: 12 CSECSYSCSSKAALRIHER-IHCTDRP--FKCNYCSFDTKQPSNLSKH 56
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 31.5 bits (70), Expect = 0.037
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Query: 94 CKICGK-HYSNSSNLKQHIRLIH-LPGILFCPLCQKCFKNKLYLRRHVISFHEN 145
C C LK+H+ + L L C C+K FK+K L H ++ H
Sbjct: 27 CPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSA 80
Score = 27.6 bits (60), Expect = 0.67
Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Query: 22 CKICGK-HYSNSSNLKQHIRLIH-LPGILFCPLCQKCFKNKLYLRRHV 67
C C LK+H+ + L L C C+K FK+K L H
Sbjct: 27 CPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHT 74
Score = 24.5 bits (52), Expect = 9.8
Identities = 6/22 (27%), Positives = 10/22 (45%)
Query: 22 CKICGKHYSNSSNLKQHIRLIH 43
C+ C K + + + L H H
Sbjct: 57 CQHCRKQFKSKAGLNYHTMAEH 78
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 29.8 bits (68), Expect = 0.045
Identities = 7/22 (31%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 22 CKICGKHYSNSSNLKQHIRLIH 43
C+ CG + ++L+ H+ IH
Sbjct: 14 CETCGARFVQVAHLRAHVL-IH 34
Score = 29.8 bits (68), Expect = 0.045
Identities = 7/22 (31%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 94 CKICGKHYSNSSNLKQHIRLIH 115
C+ CG + ++L+ H+ IH
Sbjct: 14 CETCGARFVQVAHLRAHVL-IH 34
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 72
Score = 30.1 bits (69), Expect = 0.060
Identities = 27/95 (28%), Positives = 30/95 (31%), Gaps = 47/95 (49%)
Query: 22 CKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVGTYTHTPSYRSVPG 81
C CGK +S SS L QH R HT
Sbjct: 17 CVECGKAFSRSSILVQHQR------------------------------VHT-------- 38
Query: 82 ASKPLHSLDARY-CKICGKHYSNSSNLKQHIRLIH 115
KP Y C CGK +S +S L H R IH
Sbjct: 39 GEKP-------YKCLECGKAFSQNSGLINHQR-IH 65
Score = 29.0 bits (66), Expect = 0.13
Identities = 19/48 (39%), Positives = 21/48 (43%), Gaps = 6/48 (12%)
Query: 94 CKICGKHYSNSSNLKQHIRLIHL---PGILFCPLCQKCFKNKLYLRRH 138
C CGK +S SS L QH R +H P C C K F L H
Sbjct: 17 CVECGKAFSRSSILVQHQR-VHTGEKP--YKCLECGKAFSQNSGLINH 61
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 29.1 bits (66), Expect = 0.079
Identities = 10/22 (45%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Query: 22 CKICGKHYSNSSNLKQHIRLIH 43
CK CG ++S S +L +H+R H
Sbjct: 15 CKECGMNFSWSCSLFKHLR-SH 35
Score = 29.1 bits (66), Expect = 0.079
Identities = 10/22 (45%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Query: 94 CKICGKHYSNSSNLKQHIRLIH 115
CK CG ++S S +L +H+R H
Sbjct: 15 CKECGMNFSWSCSLFKHLR-SH 35
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 29.7 bits (68), Expect = 0.084
Identities = 25/95 (26%), Positives = 32/95 (33%), Gaps = 47/95 (49%)
Query: 22 CKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVGTYTHTPSYRSVPG 81
C CGK +S+SS+L +H R THT
Sbjct: 21 CDECGKSFSHSSDLSKHRR------------------------------THT-------- 42
Query: 82 ASKPLHSLDARY-CKICGKHYSNSSNLKQHIRLIH 115
KP Y C CGK + S+L H R +H
Sbjct: 43 GEKP-------YKCDECGKAFIQRSHLIGHHR-VH 69
Score = 29.3 bits (67), Expect = 0.11
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 6/48 (12%)
Query: 94 CKICGKHYSNSSNLKQHIRLIHL---PGILFCPLCQKCFKNKLYLRRH 138
C CGK +S+SS+L +H R H P C C K F + +L H
Sbjct: 21 CDECGKSFSHSSDLSKHRR-THTGEKP--YKCDECGKAFIQRSHLIGH 65
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 29.6 bits (67), Expect = 0.096
Identities = 18/83 (21%), Positives = 31/83 (37%), Gaps = 16/83 (19%)
Query: 30 SNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVGTYTHTPSYRSVPGASKPLHSL 89
+NL ++ P C + F L RH+ +T ++
Sbjct: 4 HPMNNLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQ------------ 51
Query: 90 DARYCKICGKHYSNSSNLKQHIR 112
C+IC +++S S +L HIR
Sbjct: 52 ----CRICMRNFSRSDHLTTHIR 70
Score = 27.7 bits (62), Expect = 0.42
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 25 CGKHYSNSSNLKQHIRLIHLPGILF-CPLCQKCFKNKLYLRRHVGTYT 71
C + +S S L +HIR IH F C +C + F +L H+ T+T
Sbjct: 27 CDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 25.7 bits (57), Expect = 2.1
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 97 CGKHYSNSSNLKQHIRLIHLPGILF-CPLCQKCFKNKLYLRRHV 139
C + +S S L +HIR IH F C +C + F +L H+
Sbjct: 27 CDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHI 69
Score = 25.3 bits (56), Expect = 2.9
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 22 CKICGKHYSNSSNLKQHIR 40
C+IC +++S S +L HIR
Sbjct: 52 CRICMRNFSRSDHLTTHIR 70
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 28.7 bits (65), Expect = 0.11
Identities = 11/22 (50%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 22 CKICGKHYSNSSNLKQHIRLIH 43
C CGK + +SN QH R IH
Sbjct: 15 CSDCGKFFLQASNFIQHRR-IH 35
Score = 28.7 bits (65), Expect = 0.11
Identities = 11/22 (50%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 94 CKICGKHYSNSSNLKQHIRLIH 115
C CGK + +SN QH R IH
Sbjct: 15 CSDCGKFFLQASNFIQHRR-IH 35
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 28.6 bits (65), Expect = 0.12
Identities = 12/22 (54%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 22 CKICGKHYSNSSNLKQHIRLIH 43
C CGK +S SS L H R IH
Sbjct: 15 CAECGKSFSISSQLATHQR-IH 35
Score = 28.6 bits (65), Expect = 0.12
Identities = 12/22 (54%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 94 CKICGKHYSNSSNLKQHIRLIH 115
C CGK +S SS L H R IH
Sbjct: 15 CAECGKSFSISSQLATHQR-IH 35
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.6 bits (65), Expect = 0.13
Identities = 9/22 (40%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Query: 22 CKICGKHYSNSSNLKQHIRLIH 43
C +C K +S+ ++L QH R +H
Sbjct: 15 CDVCRKAFSHHASLTQHQR-VH 35
Score = 28.6 bits (65), Expect = 0.13
Identities = 9/22 (40%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Query: 94 CKICGKHYSNSSNLKQHIRLIH 115
C +C K +S+ ++L QH R +H
Sbjct: 15 CDVCRKAFSHHASLTQHQR-VH 35
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.3 bits (64), Expect = 0.14
Identities = 10/22 (45%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
Query: 22 CKICGKHYSNSSNLKQHIRLIH 43
C CGK +S S L QH H
Sbjct: 15 CSECGKSFSGSYRLTQHWI-TH 35
Score = 28.3 bits (64), Expect = 0.14
Identities = 10/22 (45%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
Query: 94 CKICGKHYSNSSNLKQHIRLIH 115
C CGK +S S L QH H
Sbjct: 15 CSECGKSFSGSYRLTQHWI-TH 35
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 28.3 bits (64), Expect = 0.16
Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 22 CKICGKHYSNSSNLKQHIRLIH 43
CK CGK +S + L +H R +H
Sbjct: 15 CKECGKSFSRAPCLLKHER-LH 35
Score = 28.3 bits (64), Expect = 0.16
Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 94 CKICGKHYSNSSNLKQHIRLIH 115
CK CGK +S + L +H R +H
Sbjct: 15 CKECGKSFSRAPCLLKHER-LH 35
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 28.2 bits (64), Expect = 0.17
Identities = 10/22 (45%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Query: 22 CKICGKHYSNSSNLKQHIRLIH 43
C++CGK + SS+L QH +H
Sbjct: 15 CQVCGKAFRVSSHLVQHHS-VH 35
Score = 28.2 bits (64), Expect = 0.17
Identities = 10/22 (45%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Query: 94 CKICGKHYSNSSNLKQHIRLIH 115
C++CGK + SS+L QH +H
Sbjct: 15 CQVCGKAFRVSSHLVQHHS-VH 35
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 27.9 bits (63), Expect = 0.19
Identities = 9/22 (40%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Query: 22 CKICGKHYSNSSNLKQHIRLIH 43
C+ CGK + +L H R IH
Sbjct: 13 CQECGKSFRQKGSLTLHER-IH 33
Score = 27.9 bits (63), Expect = 0.19
Identities = 9/22 (40%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Query: 94 CKICGKHYSNSSNLKQHIRLIH 115
C+ CGK + +L H R IH
Sbjct: 13 CQECGKSFRQKGSLTLHER-IH 33
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.8 bits (63), Expect = 0.20
Identities = 9/22 (40%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Query: 22 CKICGKHYSNSSNLKQHIRLIH 43
C ICGK + S L +H +H
Sbjct: 15 CDICGKSFCGRSRLNRHSM-VH 35
Score = 27.8 bits (63), Expect = 0.20
Identities = 9/22 (40%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Query: 94 CKICGKHYSNSSNLKQHIRLIH 115
C ICGK + S L +H +H
Sbjct: 15 CDICGKSFCGRSRLNRHSM-VH 35
>3iyl_X VP3; non-enveloped virus, membrane penetration protein, autocleav
myristol group, icosahedral virus; HET: MYR; 3.30A
{Grass carp reovirus} PDB: 3k1q_C 3k1q_B
Length = 1214
Score = 30.6 bits (68), Expect = 0.20
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 10 GSKPLHSLDARYCKICGKHYSNSSNLKQHIRLIH 43
P+ + + C +C +S S L +H+R H
Sbjct: 107 KVTPIVNPSSYVCNVCNARFSTMSALSEHLRSDH 140
Score = 30.2 bits (67), Expect = 0.26
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 85 PLHSLDARYCKICGKHYSNSSNLKQHIRLIH 115
P+ + + C +C +S S L +H+R H
Sbjct: 110 PIVNPSSYVCNVCNARFSTMSALSEHLRSDH 140
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.9 bits (63), Expect = 0.21
Identities = 9/22 (40%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Query: 22 CKICGKHYSNSSNLKQHIRLIH 43
C +C K + S+L H R IH
Sbjct: 15 CDVCHKSFRYGSSLTVHQR-IH 35
Score = 27.9 bits (63), Expect = 0.21
Identities = 9/22 (40%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Query: 94 CKICGKHYSNSSNLKQHIRLIH 115
C +C K + S+L H R IH
Sbjct: 15 CDVCHKSFRYGSSLTVHQR-IH 35
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 42
Score = 27.9 bits (63), Expect = 0.21
Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 22 CKICGKHYSNSSNLKQHIRLIH 43
C CGK +S +L HIR +H
Sbjct: 14 CDQCGKAFSQKGSLIVHIR-VH 34
Score = 27.9 bits (63), Expect = 0.21
Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 94 CKICGKHYSNSSNLKQHIRLIH 115
C CGK +S +L HIR +H
Sbjct: 14 CDQCGKAFSQKGSLIVHIR-VH 34
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.9 bits (63), Expect = 0.21
Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 22 CKICGKHYSNSSNLKQHIRLIH 43
C +CGK +S+ +L H R IH
Sbjct: 15 CSVCGKAFSHRQSLSVHQR-IH 35
Score = 27.9 bits (63), Expect = 0.21
Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 94 CKICGKHYSNSSNLKQHIRLIH 115
C +CGK +S+ +L H R IH
Sbjct: 15 CSVCGKAFSHRQSLSVHQR-IH 35
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.8 bits (63), Expect = 0.21
Identities = 10/22 (45%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Query: 22 CKICGKHYSNSSNLKQHIRLIH 43
C +CGK +++ SNL +H + IH
Sbjct: 15 CTVCGKAFTDRSNLIKHQK-IH 35
Score = 27.8 bits (63), Expect = 0.21
Identities = 10/22 (45%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Query: 94 CKICGKHYSNSSNLKQHIRLIH 115
C +CGK +++ SNL +H + IH
Sbjct: 15 CTVCGKAFTDRSNLIKHQK-IH 35
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.9 bits (63), Expect = 0.22
Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 22 CKICGKHYSNSSNLKQHIRLIH 43
C CGK + S+ L +H R IH
Sbjct: 15 CDYCGKAFGLSAELVRHQR-IH 35
Score = 27.9 bits (63), Expect = 0.22
Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 94 CKICGKHYSNSSNLKQHIRLIH 115
C CGK + S+ L +H R IH
Sbjct: 15 CDYCGKAFGLSAELVRHQR-IH 35
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.9 bits (63), Expect = 0.22
Identities = 9/22 (40%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 22 CKICGKHYSNSSNLKQHIRLIH 43
C+ CGK Y++ NL H + +H
Sbjct: 15 CEKCGKGYNSKFNLDMHQK-VH 35
Score = 27.9 bits (63), Expect = 0.22
Identities = 9/22 (40%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 94 CKICGKHYSNSSNLKQHIRLIH 115
C+ CGK Y++ NL H + +H
Sbjct: 15 CEKCGKGYNSKFNLDMHQK-VH 35
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.9 bits (63), Expect = 0.22
Identities = 10/22 (45%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Query: 22 CKICGKHYSNSSNLKQHIRLIH 43
C +CGK + S++L QH+R +H
Sbjct: 15 CNVCGKAFVLSAHLNQHLR-VH 35
Score = 27.9 bits (63), Expect = 0.22
Identities = 10/22 (45%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Query: 94 CKICGKHYSNSSNLKQHIRLIH 115
C +CGK + S++L QH+R +H
Sbjct: 15 CNVCGKAFVLSAHLNQHLR-VH 35
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.9 bits (63), Expect = 0.22
Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 22 CKICGKHYSNSSNLKQHIRLIH 43
C ICGK ++ S L H + IH
Sbjct: 15 CSICGKSFTKKSQLHVHQQ-IH 35
Score = 27.9 bits (63), Expect = 0.22
Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 94 CKICGKHYSNSSNLKQHIRLIH 115
C ICGK ++ S L H + IH
Sbjct: 15 CSICGKSFTKKSQLHVHQQ-IH 35
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 27.9 bits (63), Expect = 0.22
Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 22 CKICGKHYSNSSNLKQHIRLIH 43
CK CGK + +S L +H R +H
Sbjct: 15 CKECGKSFRWASCLLKHQR-VH 35
Score = 27.9 bits (63), Expect = 0.22
Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 94 CKICGKHYSNSSNLKQHIRLIH 115
CK CGK + +S L +H R +H
Sbjct: 15 CKECGKSFRWASCLLKHQR-VH 35
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.5 bits (62), Expect = 0.28
Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 22 CKICGKHYSNSSNLKQHIRLIH 43
C CGK ++ SNL +H + IH
Sbjct: 15 CAECGKAFTIRSNLIKHQK-IH 35
Score = 27.5 bits (62), Expect = 0.28
Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 94 CKICGKHYSNSSNLKQHIRLIH 115
C CGK ++ SNL +H + IH
Sbjct: 15 CAECGKAFTIRSNLIKHQK-IH 35
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.5 bits (62), Expect = 0.28
Identities = 10/22 (45%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Query: 22 CKICGKHYSNSSNLKQHIRLIH 43
C+ CGK + + S L++H R IH
Sbjct: 15 CEECGKAFIHDSQLQEHQR-IH 35
Score = 27.5 bits (62), Expect = 0.28
Identities = 10/22 (45%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Query: 94 CKICGKHYSNSSNLKQHIRLIH 115
C+ CGK + + S L++H R IH
Sbjct: 15 CEECGKAFIHDSQLQEHQR-IH 35
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.5 bits (62), Expect = 0.28
Identities = 11/22 (50%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Query: 22 CKICGKHYSNSSNLKQHIRLIH 43
C +CGK +S SS+L+ H R +H
Sbjct: 15 CDVCGKEFSQSSHLQTHQR-VH 35
Score = 27.5 bits (62), Expect = 0.28
Identities = 11/22 (50%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Query: 94 CKICGKHYSNSSNLKQHIRLIH 115
C +CGK +S SS+L+ H R +H
Sbjct: 15 CDVCGKEFSQSSHLQTHQR-VH 35
>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI,
protein structure initiative, center for eukaryotic
structural genomics, CESG; NMR {Homo sapiens} SCOP:
g.37.1.4
Length = 124
Score = 29.3 bits (65), Expect = 0.29
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 21 YCKICGKHYSNSSNLKQHIR 40
C C +++ +S+NLK H R
Sbjct: 52 RCLACARYFIDSTNLKTHFR 71
Score = 29.3 bits (65), Expect = 0.29
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 93 YCKICGKHYSNSSNLKQHIR 112
C C +++ +S+NLK H R
Sbjct: 52 RCLACARYFIDSTNLKTHFR 71
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 27.5 bits (62), Expect = 0.29
Identities = 11/22 (50%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Query: 22 CKICGKHYSNSSNLKQHIRLIH 43
CK CGK +S +++L QH R +H
Sbjct: 15 CKECGKAFSQTTHLIQHQR-VH 35
Score = 27.5 bits (62), Expect = 0.29
Identities = 11/22 (50%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Query: 94 CKICGKHYSNSSNLKQHIRLIH 115
CK CGK +S +++L QH R +H
Sbjct: 15 CKECGKAFSQTTHLIQHQR-VH 35
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 27.5 bits (62), Expect = 0.31
Identities = 11/22 (50%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 22 CKICGKHYSNSSNLKQHIRLIH 43
C CGK +S+ L QH R IH
Sbjct: 15 CIDCGKAFSDHIGLNQHRR-IH 35
Score = 27.5 bits (62), Expect = 0.31
Identities = 11/22 (50%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 94 CKICGKHYSNSSNLKQHIRLIH 115
C CGK +S+ L QH R IH
Sbjct: 15 CIDCGKAFSDHIGLNQHRR-IH 35
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.5 bits (62), Expect = 0.31
Identities = 9/22 (40%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 22 CKICGKHYSNSSNLKQHIRLIH 43
C CGK + ++L +H R IH
Sbjct: 15 CSECGKAFHRHTHLNEHRR-IH 35
Score = 27.5 bits (62), Expect = 0.31
Identities = 9/22 (40%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 94 CKICGKHYSNSSNLKQHIRLIH 115
C CGK + ++L +H R IH
Sbjct: 15 CSECGKAFHRHTHLNEHRR-IH 35
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.5 bits (62), Expect = 0.31
Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 22 CKICGKHYSNSSNLKQHIRLIH 43
C CGK +++ SNL H + IH
Sbjct: 15 CAECGKAFTDRSNLFTHQK-IH 35
Score = 27.5 bits (62), Expect = 0.31
Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 94 CKICGKHYSNSSNLKQHIRLIH 115
C CGK +++ SNL H + IH
Sbjct: 15 CAECGKAFTDRSNLFTHQK-IH 35
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 27.5 bits (62), Expect = 0.32
Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 22 CKICGKHYSNSSNLKQHIRLIH 43
C CGK ++ +NL QH R IH
Sbjct: 15 CGECGKAFAQKANLTQHQR-IH 35
Score = 27.5 bits (62), Expect = 0.32
Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 94 CKICGKHYSNSSNLKQHIRLIH 115
C CGK ++ +NL QH R IH
Sbjct: 15 CGECGKAFAQKANLTQHQR-IH 35
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 27.5 bits (62), Expect = 0.33
Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 22 CKICGKHYSNSSNLKQHIRLIH 43
C+ CGK Y+ NL H R +H
Sbjct: 15 CEDCGKGYNRRLNLDMHQR-VH 35
Score = 27.5 bits (62), Expect = 0.33
Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 94 CKICGKHYSNSSNLKQHIRLIH 115
C+ CGK Y+ NL H R +H
Sbjct: 15 CEDCGKGYNRRLNLDMHQR-VH 35
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.5 bits (62), Expect = 0.33
Identities = 9/22 (40%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 22 CKICGKHYSNSSNLKQHIRLIH 43
C CGK + ++S+ QH R +H
Sbjct: 15 CMECGKAFGDNSSCTQHQR-LH 35
Score = 27.5 bits (62), Expect = 0.33
Identities = 9/22 (40%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 94 CKICGKHYSNSSNLKQHIRLIH 115
C CGK + ++S+ QH R +H
Sbjct: 15 CMECGKAFGDNSSCTQHQR-LH 35
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.5 bits (62), Expect = 0.34
Identities = 9/22 (40%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 22 CKICGKHYSNSSNLKQHIRLIH 43
C+ CGK ++ +S L H R +H
Sbjct: 15 CEECGKRFTQNSQLHSHQR-VH 35
Score = 27.5 bits (62), Expect = 0.34
Identities = 9/22 (40%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 94 CKICGKHYSNSSNLKQHIRLIH 115
C+ CGK ++ +S L H R +H
Sbjct: 15 CEECGKRFTQNSQLHSHQR-VH 35
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.5 bits (62), Expect = 0.34
Identities = 8/22 (36%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 22 CKICGKHYSNSSNLKQHIRLIH 43
CK+C K ++ ++L QH + H
Sbjct: 15 CKVCSKAFTQKAHLAQHQK-TH 35
Score = 27.5 bits (62), Expect = 0.34
Identities = 8/22 (36%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 94 CKICGKHYSNSSNLKQHIRLIH 115
CK+C K ++ ++L QH + H
Sbjct: 15 CKVCSKAFTQKAHLAQHQK-TH 35
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 27.1 bits (61), Expect = 0.37
Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 22 CKICGKHYSNSSNLKQHIRLIH 43
C CGK +S +S L QH + IH
Sbjct: 15 CNECGKVFSRNSQLSQHQK-IH 35
Score = 27.1 bits (61), Expect = 0.37
Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 94 CKICGKHYSNSSNLKQHIRLIH 115
C CGK +S +S L QH + IH
Sbjct: 15 CNECGKVFSRNSQLSQHQK-IH 35
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.1 bits (61), Expect = 0.40
Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 22 CKICGKHYSNSSNLKQHIRLIH 43
C CGK + ++S L +H R IH
Sbjct: 15 CNECGKVFRHNSYLSRHQR-IH 35
Score = 27.1 bits (61), Expect = 0.40
Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 94 CKICGKHYSNSSNLKQHIRLIH 115
C CGK + ++S L +H R IH
Sbjct: 15 CNECGKVFRHNSYLSRHQR-IH 35
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.1 bits (61), Expect = 0.40
Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 22 CKICGKHYSNSSNLKQHIRLIH 43
CK CGK + + +L H+R IH
Sbjct: 15 CKECGKAFRQNIHLASHLR-IH 35
Score = 27.1 bits (61), Expect = 0.40
Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 94 CKICGKHYSNSSNLKQHIRLIH 115
CK CGK + + +L H+R IH
Sbjct: 15 CKECGKAFRQNIHLASHLR-IH 35
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 27.1 bits (61), Expect = 0.40
Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 22 CKICGKHYSNSSNLKQHIRLIH 43
C CG+ ++ S+L QH R IH
Sbjct: 15 CHECGRGFTLKSHLNQHQR-IH 35
Score = 27.1 bits (61), Expect = 0.40
Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 94 CKICGKHYSNSSNLKQHIRLIH 115
C CG+ ++ S+L QH R IH
Sbjct: 15 CHECGRGFTLKSHLNQHQR-IH 35
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.1 bits (61), Expect = 0.41
Identities = 9/22 (40%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Query: 22 CKICGKHYSNSSNLKQHIRLIH 43
C CGK ++ S L H + IH
Sbjct: 15 CTECGKAFTRKSTLSMHQK-IH 35
Score = 27.1 bits (61), Expect = 0.41
Identities = 9/22 (40%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Query: 94 CKICGKHYSNSSNLKQHIRLIH 115
C CGK ++ S L H + IH
Sbjct: 15 CTECGKAFTRKSTLSMHQK-IH 35
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.1 bits (61), Expect = 0.41
Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 22 CKICGKHYSNSSNLKQHIRLIH 43
C+ CGK +S +S L H R IH
Sbjct: 15 CRECGKSFSFNSQLIVHQR-IH 35
Score = 27.1 bits (61), Expect = 0.41
Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 94 CKICGKHYSNSSNLKQHIRLIH 115
C+ CGK +S +S L H R IH
Sbjct: 15 CRECGKSFSFNSQLIVHQR-IH 35
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.1 bits (61), Expect = 0.41
Identities = 10/22 (45%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Query: 22 CKICGKHYSNSSNLKQHIRLIH 43
C CGK +S S+L H IH
Sbjct: 15 CNECGKAFSVYSSLTTHQV-IH 35
Score = 27.1 bits (61), Expect = 0.41
Identities = 10/22 (45%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Query: 94 CKICGKHYSNSSNLKQHIRLIH 115
C CGK +S S+L H IH
Sbjct: 15 CNECGKAFSVYSSLTTHQV-IH 35
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.1 bits (61), Expect = 0.42
Identities = 10/22 (45%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
Query: 22 CKICGKHYSNSSNLKQHIRLIH 43
C CGK + SNL H IH
Sbjct: 15 CNECGKAFRAHSNLTTHQV-IH 35
Score = 27.1 bits (61), Expect = 0.42
Identities = 10/22 (45%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
Query: 94 CKICGKHYSNSSNLKQHIRLIH 115
C CGK + SNL H IH
Sbjct: 15 CNECGKAFRAHSNLTTHQV-IH 35
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 45
Score = 27.1 bits (61), Expect = 0.42
Identities = 10/22 (45%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
Query: 22 CKICGKHYSNSSNLKQHIRLIH 43
C CGK + NL H R IH
Sbjct: 15 CTHCGKSFRAKGNLVTHQR-IH 35
Score = 27.1 bits (61), Expect = 0.42
Identities = 10/22 (45%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
Query: 94 CKICGKHYSNSSNLKQHIRLIH 115
C CGK + NL H R IH
Sbjct: 15 CTHCGKSFRAKGNLVTHQR-IH 35
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.1 bits (61), Expect = 0.42
Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 22 CKICGKHYSNSSNLKQHIRLIH 43
C C K ++ SS+L H R IH
Sbjct: 15 CNECKKTFTQSSSLTVHQR-IH 35
Score = 27.1 bits (61), Expect = 0.42
Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 94 CKICGKHYSNSSNLKQHIRLIH 115
C C K ++ SS+L H R IH
Sbjct: 15 CNECKKTFTQSSSLTVHQR-IH 35
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.1 bits (61), Expect = 0.45
Identities = 9/22 (40%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 22 CKICGKHYSNSSNLKQHIRLIH 43
C CGK +++ +NL H + IH
Sbjct: 15 CSECGKVFTHKTNLIIHQK-IH 35
Score = 27.1 bits (61), Expect = 0.45
Identities = 9/22 (40%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 94 CKICGKHYSNSSNLKQHIRLIH 115
C CGK +++ +NL H + IH
Sbjct: 15 CSECGKVFTHKTNLIIHQK-IH 35
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.1 bits (61), Expect = 0.47
Identities = 10/22 (45%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Query: 22 CKICGKHYSNSSNLKQHIRLIH 43
C CGK ++ S L H R IH
Sbjct: 15 CSECGKAFARKSTLIMHQR-IH 35
Score = 27.1 bits (61), Expect = 0.47
Identities = 10/22 (45%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Query: 94 CKICGKHYSNSSNLKQHIRLIH 115
C CGK ++ S L H R IH
Sbjct: 15 CSECGKAFARKSTLIMHQR-IH 35
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.1 bits (61), Expect = 0.49
Identities = 10/22 (45%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
Query: 22 CKICGKHYSNSSNLKQHIRLIH 43
C CGK + S L H R IH
Sbjct: 15 CSDCGKSFIKKSQLHVHQR-IH 35
Score = 27.1 bits (61), Expect = 0.49
Identities = 10/22 (45%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
Query: 94 CKICGKHYSNSSNLKQHIRLIH 115
C CGK + S L H R IH
Sbjct: 15 CSDCGKSFIKKSQLHVHQR-IH 35
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 26.7 bits (60), Expect = 0.51
Identities = 7/22 (31%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
Query: 22 CKICGKHYSNSSNLKQHIRLIH 43
C+ CGK + +L H +H
Sbjct: 15 CEECGKGFICRRDLYTHHM-VH 35
Score = 26.7 bits (60), Expect = 0.51
Identities = 7/22 (31%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
Query: 94 CKICGKHYSNSSNLKQHIRLIH 115
C+ CGK + +L H +H
Sbjct: 15 CEECGKGFICRRDLYTHHM-VH 35
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.7 bits (60), Expect = 0.52
Identities = 9/22 (40%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Query: 22 CKICGKHYSNSSNLKQHIRLIH 43
CK C K + +L QH R +H
Sbjct: 15 CKECRKTFIQIGHLNQHKR-VH 35
Score = 26.7 bits (60), Expect = 0.52
Identities = 9/22 (40%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Query: 94 CKICGKHYSNSSNLKQHIRLIH 115
CK C K + +L QH R +H
Sbjct: 15 CKECRKTFIQIGHLNQHKR-VH 35
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 26.7 bits (60), Expect = 0.53
Identities = 9/22 (40%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
Query: 22 CKICGKHYSNSSNLKQHIRLIH 43
C CGK + S+L H R H
Sbjct: 15 CIECGKAFKTKSSLICHRR-SH 35
Score = 26.7 bits (60), Expect = 0.53
Identities = 9/22 (40%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
Query: 94 CKICGKHYSNSSNLKQHIRLIH 115
C CGK + S+L H R H
Sbjct: 15 CIECGKAFKTKSSLICHRR-SH 35
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.7 bits (60), Expect = 0.55
Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 22 CKICGKHYSNSSNLKQHIRLIH 43
C CGK ++ +S+L H R IH
Sbjct: 15 CNECGKVFTQNSHLTNHWR-IH 35
Score = 26.7 bits (60), Expect = 0.55
Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 94 CKICGKHYSNSSNLKQHIRLIH 115
C CGK ++ +S+L H R IH
Sbjct: 15 CNECGKVFTQNSHLTNHWR-IH 35
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 26.7 bits (60), Expect = 0.57
Identities = 8/22 (36%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 22 CKICGKHYSNSSNLKQHIRLIH 43
C CGK++ S+L +H++ H
Sbjct: 15 CNECGKNFGRHSHLIEHLK-RH 35
Score = 26.7 bits (60), Expect = 0.57
Identities = 8/22 (36%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 94 CKICGKHYSNSSNLKQHIRLIH 115
C CGK++ S+L +H++ H
Sbjct: 15 CNECGKNFGRHSHLIEHLK-RH 35
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.7 bits (60), Expect = 0.57
Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 22 CKICGKHYSNSSNLKQHIRLIH 43
C CGK +S +S L +H R +H
Sbjct: 15 CNECGKAFSQTSKLARHQR-VH 35
Score = 26.7 bits (60), Expect = 0.57
Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 94 CKICGKHYSNSSNLKQHIRLIH 115
C CGK +S +S L +H R +H
Sbjct: 15 CNECGKAFSQTSKLARHQR-VH 35
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 26.7 bits (60), Expect = 0.57
Identities = 9/22 (40%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Query: 22 CKICGKHYSNSSNLKQHIRLIH 43
C CGK +S S L H + +H
Sbjct: 15 CVECGKGFSRRSALNVHHK-LH 35
Score = 26.7 bits (60), Expect = 0.57
Identities = 9/22 (40%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Query: 94 CKICGKHYSNSSNLKQHIRLIH 115
C CGK +S S L H + +H
Sbjct: 15 CVECGKGFSRRSALNVHHK-LH 35
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 26.7 bits (60), Expect = 0.59
Identities = 8/22 (36%), Positives = 10/22 (45%), Gaps = 1/22 (4%)
Query: 22 CKICGKHYSNSSNLKQHIRLIH 43
C C K +S L H R +H
Sbjct: 15 CSQCEKSFSGKLRLLVHQR-MH 35
Score = 26.7 bits (60), Expect = 0.59
Identities = 8/22 (36%), Positives = 10/22 (45%), Gaps = 1/22 (4%)
Query: 94 CKICGKHYSNSSNLKQHIRLIH 115
C C K +S L H R +H
Sbjct: 15 CSQCEKSFSGKLRLLVHQR-MH 35
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.7 bits (60), Expect = 0.59
Identities = 9/22 (40%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 22 CKICGKHYSNSSNLKQHIRLIH 43
C CGK + +S+L +H IH
Sbjct: 15 CHECGKVFRRNSHLARHQL-IH 35
Score = 26.7 bits (60), Expect = 0.59
Identities = 9/22 (40%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 94 CKICGKHYSNSSNLKQHIRLIH 115
C CGK + +S+L +H IH
Sbjct: 15 CHECGKVFRRNSHLARHQL-IH 35
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.7 bits (60), Expect = 0.60
Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 22 CKICGKHYSNSSNLKQHIRLIH 43
C CGK +S+ S L H+R H
Sbjct: 15 CSECGKAFSSKSYLIIHMR-TH 35
Score = 26.7 bits (60), Expect = 0.60
Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 94 CKICGKHYSNSSNLKQHIRLIH 115
C CGK +S+ S L H+R H
Sbjct: 15 CSECGKAFSSKSYLIIHMR-TH 35
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.7 bits (60), Expect = 0.61
Identities = 9/22 (40%), Positives = 10/22 (45%), Gaps = 1/22 (4%)
Query: 22 CKICGKHYSNSSNLKQHIRLIH 43
C CGK +S L H R H
Sbjct: 15 CHECGKAFSRKYQLISHQR-TH 35
Score = 26.7 bits (60), Expect = 0.61
Identities = 9/22 (40%), Positives = 10/22 (45%), Gaps = 1/22 (4%)
Query: 94 CKICGKHYSNSSNLKQHIRLIH 115
C CGK +S L H R H
Sbjct: 15 CHECGKAFSRKYQLISHQR-TH 35
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.7 bits (60), Expect = 0.62
Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 22 CKICGKHYSNSSNLKQHIRLIH 43
C CGK +S +S L +H R IH
Sbjct: 15 CNECGKAFSQTSKLARHQR-IH 35
Score = 26.7 bits (60), Expect = 0.62
Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 94 CKICGKHYSNSSNLKQHIRLIH 115
C CGK +S +S L +H R IH
Sbjct: 15 CNECGKAFSQTSKLARHQR-IH 35
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 26.7 bits (60), Expect = 0.66
Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 22 CKICGKHYSNSSNLKQHIRLIH 43
C CGK + S++L QH R IH
Sbjct: 15 CNECGKSFIQSAHLIQHQR-IH 35
Score = 26.7 bits (60), Expect = 0.66
Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 94 CKICGKHYSNSSNLKQHIRLIH 115
C CGK + S++L QH R IH
Sbjct: 15 CNECGKSFIQSAHLIQHQR-IH 35
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 26.7 bits (60), Expect = 0.67
Identities = 9/22 (40%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
Query: 22 CKICGKHYSNSSNLKQHIRLIH 43
C C K ++ SNL H R H
Sbjct: 15 CNECQKAFNTKSNLMVHQR-TH 35
Score = 26.7 bits (60), Expect = 0.67
Identities = 9/22 (40%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
Query: 94 CKICGKHYSNSSNLKQHIRLIH 115
C C K ++ SNL H R H
Sbjct: 15 CNECQKAFNTKSNLMVHQR-TH 35
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.7 bits (60), Expect = 0.68
Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 22 CKICGKHYSNSSNLKQHIRLIH 43
C CGK ++ +S+L H R IH
Sbjct: 15 CNECGKVFTQNSHLANHQR-IH 35
Score = 26.7 bits (60), Expect = 0.68
Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 94 CKICGKHYSNSSNLKQHIRLIH 115
C CGK ++ +S+L H R IH
Sbjct: 15 CNECGKVFTQNSHLANHQR-IH 35
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 26.3 bits (59), Expect = 0.69
Identities = 8/22 (36%), Positives = 10/22 (45%), Gaps = 1/22 (4%)
Query: 22 CKICGKHYSNSSNLKQHIRLIH 43
C CGK ++ L H R H
Sbjct: 13 CSECGKAFNRKDQLISHQR-TH 33
Score = 26.3 bits (59), Expect = 0.69
Identities = 8/22 (36%), Positives = 10/22 (45%), Gaps = 1/22 (4%)
Query: 94 CKICGKHYSNSSNLKQHIRLIH 115
C CGK ++ L H R H
Sbjct: 13 CSECGKAFNRKDQLISHQR-TH 33
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.3 bits (59), Expect = 0.71
Identities = 10/22 (45%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Query: 22 CKICGKHYSNSSNLKQHIRLIH 43
C CGK +S S+L H IH
Sbjct: 15 CNQCGKAFSVRSSLTTHQA-IH 35
Score = 26.3 bits (59), Expect = 0.71
Identities = 10/22 (45%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Query: 94 CKICGKHYSNSSNLKQHIRLIH 115
C CGK +S S+L H IH
Sbjct: 15 CNQCGKAFSVRSSLTTHQA-IH 35
>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein,
helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis}
SCOP: g.37.1.4 g.37.1.4
Length = 127
Score = 28.0 bits (61), Expect = 0.72
Identities = 14/93 (15%), Positives = 27/93 (29%), Gaps = 13/93 (13%)
Query: 21 YCKICGKHYSNSSNLKQHIR-LIHLPGILFCPLCQKCFKNKLYLRRHVGTYTHTPSYRSV 79
CK+C + S H + H K + Y+ + G +
Sbjct: 34 QCKVCSAVLISESQKLAHYQSRKHA------------NKVRRYMAINQGEDSVPAKKFKA 81
Query: 80 PGASKPLHSLDARYCKICGKHYSNSSNLKQHIR 112
A ++ C +C +S+ + H
Sbjct: 82 APAEISDGEDRSKCCPVCNMTFSSPVVAESHYI 114
Score = 28.0 bits (61), Expect = 0.76
Identities = 16/99 (16%), Positives = 30/99 (30%), Gaps = 11/99 (11%)
Query: 43 HLPGILFCPLCQKCFKNKLYLRRHVGTYTHTPSYRSVPGASKPLHSLDARYCKICGKHYS 102
H+ C +C ++ H + H R ++ S+ A+ K S
Sbjct: 28 HIFSDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAPAEIS 87
Query: 103 NSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVIS 141
+ + CP+C F + + H I
Sbjct: 88 DGEDRS-----------KCCPVCNMTFSSPVVAESHYIG 115
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.3 bits (59), Expect = 0.73
Identities = 10/22 (45%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
Query: 22 CKICGKHYSNSSNLKQHIRLIH 43
C CGK + S L H R IH
Sbjct: 15 CSECGKAFIQKSTLSMHQR-IH 35
Score = 26.3 bits (59), Expect = 0.73
Identities = 10/22 (45%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
Query: 94 CKICGKHYSNSSNLKQHIRLIH 115
C CGK + S L H R IH
Sbjct: 15 CSECGKAFIQKSTLSMHQR-IH 35
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 26.3 bits (59), Expect = 0.73
Identities = 9/22 (40%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
Query: 22 CKICGKHYSNSSNLKQHIRLIH 43
C CGK + + S L H R H
Sbjct: 15 CNECGKAFRSKSYLIIHTR-TH 35
Score = 26.3 bits (59), Expect = 0.73
Identities = 9/22 (40%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
Query: 94 CKICGKHYSNSSNLKQHIRLIH 115
C CGK + + S L H R H
Sbjct: 15 CNECGKAFRSKSYLIIHTR-TH 35
>4dgw_A PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 402
Score = 28.7 bits (63), Expect = 0.75
Identities = 6/22 (27%), Positives = 10/22 (45%)
Query: 18 DARYCKICGKHYSNSSNLKQHI 39
YC C + + SS + H+
Sbjct: 291 KGIYCPFCSRWFKTSSVFESHL 312
Score = 28.7 bits (63), Expect = 0.75
Identities = 6/22 (27%), Positives = 10/22 (45%)
Query: 90 DARYCKICGKHYSNSSNLKQHI 111
YC C + + SS + H+
Sbjct: 291 KGIYCPFCSRWFKTSSVFESHL 312
Score = 25.6 bits (55), Expect = 7.0
Identities = 7/24 (29%), Positives = 10/24 (41%)
Query: 49 FCPLCQKCFKNKLYLRRHVGTYTH 72
+CP C + FK H+ H
Sbjct: 294 YCPFCSRWFKTSSVFESHLVGKIH 317
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.3 bits (59), Expect = 0.82
Identities = 9/22 (40%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
Query: 22 CKICGKHYSNSSNLKQHIRLIH 43
C C K ++ SNL H R H
Sbjct: 15 CSECQKAFNTKSNLIVHQR-TH 35
Score = 26.3 bits (59), Expect = 0.82
Identities = 9/22 (40%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
Query: 94 CKICGKHYSNSSNLKQHIRLIH 115
C C K ++ SNL H R H
Sbjct: 15 CSECQKAFNTKSNLIVHQR-TH 35
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.3 bits (59), Expect = 0.82
Identities = 9/22 (40%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
Query: 22 CKICGKHYSNSSNLKQHIRLIH 43
C CGK Y +L H R +H
Sbjct: 15 CVECGKGYKRRLDLDFHQR-VH 35
Score = 26.3 bits (59), Expect = 0.82
Identities = 9/22 (40%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
Query: 94 CKICGKHYSNSSNLKQHIRLIH 115
C CGK Y +L H R +H
Sbjct: 15 CVECGKGYKRRLDLDFHQR-VH 35
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 26.3 bits (59), Expect = 0.82
Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 22 CKICGKHYSNSSNLKQHIRLIH 43
C CGK Y+ +L QH R +H
Sbjct: 15 CGECGKSYNQRVHLTQHQR-VH 35
Score = 26.3 bits (59), Expect = 0.82
Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 94 CKICGKHYSNSSNLKQHIRLIH 115
C CGK Y+ +L QH R +H
Sbjct: 15 CGECGKSYNQRVHLTQHQR-VH 35
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 28.2 bits (62), Expect = 0.82
Identities = 9/47 (19%), Positives = 14/47 (29%)
Query: 21 YCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHV 67
Y + K + S H L L ++ N LR +
Sbjct: 182 YSEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPI 228
Score = 28.2 bits (62), Expect = 0.82
Identities = 9/47 (19%), Positives = 14/47 (29%)
Query: 93 YCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHV 139
Y + K + S H L L ++ N LR +
Sbjct: 182 YSEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPI 228
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 26.3 bits (59), Expect = 0.86
Identities = 9/22 (40%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 22 CKICGKHYSNSSNLKQHIRLIH 43
C CGK + S+L H+R +H
Sbjct: 15 CNECGKGFGRRSHLAGHLR-LH 35
Score = 26.3 bits (59), Expect = 0.86
Identities = 9/22 (40%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 94 CKICGKHYSNSSNLKQHIRLIH 115
C CGK + S+L H+R +H
Sbjct: 15 CNECGKGFGRRSHLAGHLR-LH 35
>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} PDB: 2elw_A
Length = 37
Score = 26.3 bits (57), Expect = 0.90
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 20 RYCKICGKHYSNSSNLKQHIRLIHLP 45
++C+ C K YS+ NL +HIR H P
Sbjct: 10 QHCRFCKKKYSDVKNLIKHIRDAHDP 35
Score = 26.3 bits (57), Expect = 0.90
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 92 RYCKICGKHYSNSSNLKQHIRLIHLP 117
++C+ C K YS+ NL +HIR H P
Sbjct: 10 QHCRFCKKKYSDVKNLIKHIRDAHDP 35
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.3 bits (59), Expect = 0.91
Identities = 9/22 (40%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 22 CKICGKHYSNSSNLKQHIRLIH 43
C CGK ++ +S+L +H IH
Sbjct: 15 CNECGKVFTQNSHLARHRG-IH 35
Score = 26.3 bits (59), Expect = 0.91
Identities = 9/22 (40%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 94 CKICGKHYSNSSNLKQHIRLIH 115
C CGK ++ +S+L +H IH
Sbjct: 15 CNECGKVFTQNSHLARHRG-IH 35
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.0 bits (58), Expect = 0.94
Identities = 9/22 (40%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Query: 22 CKICGKHYSNSSNLKQHIRLIH 43
C+ CGK ++ +S+L H R +H
Sbjct: 15 CEECGKRFTQNSHLHSHQR-VH 35
Score = 26.0 bits (58), Expect = 0.94
Identities = 9/22 (40%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Query: 94 CKICGKHYSNSSNLKQHIRLIH 115
C+ CGK ++ +S+L H R +H
Sbjct: 15 CEECGKRFTQNSHLHSHQR-VH 35
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 26.1 bits (58), Expect = 0.94
Identities = 7/22 (31%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 22 CKICGKHYSNSSNLKQHIRLIH 43
C C + +S+++ L QH + +H
Sbjct: 13 CAECKETFSDNNRLVQHQK-MH 33
Score = 26.1 bits (58), Expect = 0.94
Identities = 7/22 (31%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 94 CKICGKHYSNSSNLKQHIRLIH 115
C C + +S+++ L QH + +H
Sbjct: 13 CAECKETFSDNNRLVQHQK-MH 33
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.3 bits (59), Expect = 0.96
Identities = 9/22 (40%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 22 CKICGKHYSNSSNLKQHIRLIH 43
C CGK ++ +S+L +H IH
Sbjct: 15 CNECGKVFTQNSHLARHRG-IH 35
Score = 26.3 bits (59), Expect = 0.96
Identities = 9/22 (40%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 94 CKICGKHYSNSSNLKQHIRLIH 115
C CGK ++ +S+L +H IH
Sbjct: 15 CNECGKVFTQNSHLARHRG-IH 35
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 25.9 bits (58), Expect = 0.97
Identities = 8/22 (36%), Positives = 10/22 (45%), Gaps = 1/22 (4%)
Query: 22 CKICGKHYSNSSNLKQHIRLIH 43
C CGK +S L H + H
Sbjct: 15 CCECGKVFSRKDQLVSHQK-TH 35
Score = 25.9 bits (58), Expect = 0.97
Identities = 8/22 (36%), Positives = 10/22 (45%), Gaps = 1/22 (4%)
Query: 94 CKICGKHYSNSSNLKQHIRLIH 115
C CGK +S L H + H
Sbjct: 15 CCECGKVFSRKDQLVSHQK-TH 35
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 26.0 bits (58), Expect = 0.98
Identities = 8/22 (36%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 22 CKICGKHYSNSSNLKQHIRLIH 43
C CGK ++ +L +H + IH
Sbjct: 15 CNECGKAFTRIFHLTRHQK-IH 35
Score = 26.0 bits (58), Expect = 0.98
Identities = 8/22 (36%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 94 CKICGKHYSNSSNLKQHIRLIH 115
C CGK ++ +L +H + IH
Sbjct: 15 CNECGKAFTRIFHLTRHQK-IH 35
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.9 bits (58), Expect = 0.98
Identities = 9/22 (40%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 22 CKICGKHYSNSSNLKQHIRLIH 43
C CGK ++ +S+L +H IH
Sbjct: 15 CNECGKVFTQNSHLVRHRG-IH 35
Score = 25.9 bits (58), Expect = 0.98
Identities = 9/22 (40%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 94 CKICGKHYSNSSNLKQHIRLIH 115
C CGK ++ +S+L +H IH
Sbjct: 15 CNECGKVFTQNSHLVRHRG-IH 35
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.0 bits (58), Expect = 1.0
Identities = 8/22 (36%), Positives = 10/22 (45%), Gaps = 1/22 (4%)
Query: 22 CKICGKHYSNSSNLKQHIRLIH 43
C CGK + S+L H H
Sbjct: 15 CNECGKAFRARSSLAIHQA-TH 35
Score = 26.0 bits (58), Expect = 1.0
Identities = 8/22 (36%), Positives = 10/22 (45%), Gaps = 1/22 (4%)
Query: 94 CKICGKHYSNSSNLKQHIRLIH 115
C CGK + S+L H H
Sbjct: 15 CNECGKAFRARSSLAIHQA-TH 35
>3ax1_A Serrate RNA effector molecule; miRNA processing, protein binding;
2.74A {Arabidopsis thaliana}
Length = 358
Score = 28.0 bits (61), Expect = 1.1
Identities = 5/23 (21%), Positives = 9/23 (39%)
Query: 122 CPLCQKCFKNKLYLRRHVISFHE 144
C K F ++ +H+ H
Sbjct: 309 AKGCTKLFHAAEFVYKHLKLKHT 331
Score = 26.5 bits (57), Expect = 3.4
Identities = 4/18 (22%), Positives = 8/18 (44%)
Query: 50 CPLCQKCFKNKLYLRRHV 67
C K F ++ +H+
Sbjct: 309 AKGCTKLFHAAEFVYKHL 326
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.9 bits (58), Expect = 1.1
Identities = 8/22 (36%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
Query: 22 CKICGKHYSNSSNLKQHIRLIH 43
C CGK ++ S L H + H
Sbjct: 15 CSDCGKAFTRKSGLHIHQQ-SH 35
Score = 25.9 bits (58), Expect = 1.1
Identities = 8/22 (36%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
Query: 94 CKICGKHYSNSSNLKQHIRLIH 115
C CGK ++ S L H + H
Sbjct: 15 CSDCGKAFTRKSGLHIHQQ-SH 35
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
PDB: 2yta_A
Length = 42
Score = 26.1 bits (58), Expect = 1.1
Identities = 7/22 (31%), Positives = 10/22 (45%), Gaps = 1/22 (4%)
Query: 22 CKICGKHYSNSSNLKQHIRLIH 43
C CGK ++ +L H R
Sbjct: 14 CGQCGKSFTQRGSLAVHQR-SC 34
Score = 26.1 bits (58), Expect = 1.1
Identities = 7/22 (31%), Positives = 10/22 (45%), Gaps = 1/22 (4%)
Query: 94 CKICGKHYSNSSNLKQHIRLIH 115
C CGK ++ +L H R
Sbjct: 14 CGQCGKSFTQRGSLAVHQR-SC 34
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.9 bits (58), Expect = 1.1
Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 22 CKICGKHYSNSSNLKQHIRLIH 43
C CGK + S+L +H R IH
Sbjct: 15 CNECGKSFIQKSHLNRHRR-IH 35
Score = 25.9 bits (58), Expect = 1.1
Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 94 CKICGKHYSNSSNLKQHIRLIH 115
C CGK + S+L +H R IH
Sbjct: 15 CNECGKSFIQKSHLNRHRR-IH 35
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 26.0 bits (58), Expect = 1.1
Identities = 7/22 (31%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 22 CKICGKHYSNSSNLKQHIRLIH 43
C+ C +S +S+L+ H +H
Sbjct: 15 CRECDMCFSQASSLRLHQN-VH 35
Score = 26.0 bits (58), Expect = 1.1
Identities = 7/22 (31%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 94 CKICGKHYSNSSNLKQHIRLIH 115
C+ C +S +S+L+ H +H
Sbjct: 15 CRECDMCFSQASSLRLHQN-VH 35
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 26.0 bits (58), Expect = 1.2
Identities = 9/22 (40%), Positives = 10/22 (45%), Gaps = 1/22 (4%)
Query: 22 CKICGKHYSNSSNLKQHIRLIH 43
C C K +S S L H R H
Sbjct: 15 CSQCAKTFSLKSQLIVHQR-SH 35
Score = 26.0 bits (58), Expect = 1.2
Identities = 9/22 (40%), Positives = 10/22 (45%), Gaps = 1/22 (4%)
Query: 94 CKICGKHYSNSSNLKQHIRLIH 115
C C K +S S L H R H
Sbjct: 15 CSQCAKTFSLKSQLIVHQR-SH 35
>3gox_A Restriction endonuclease HPY99I; endonuclease-DNA complex,
restriction enzyme, HPY99I, pseudopalindrome; HET: 1PE;
1.50A {Helicobacter pylori} PDB: 3fc3_A*
Length = 200
Score = 27.9 bits (61), Expect = 1.2
Identities = 18/114 (15%), Positives = 26/114 (22%), Gaps = 10/114 (8%)
Query: 15 HSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVGTYTHTP 74
D + C IC + P C++C KN ++
Sbjct: 71 KGYDKKICNICHILKNTDGFEINQTD--AKGRKTTRPSCRECRKNIDGVKLSSTEKKKMD 128
Query: 75 SYRSVPGASKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKC 128
G+ C IC K H G +C C
Sbjct: 129 EIAPPKGSVFT--------CPICEKRSIVGVTANLVHDHNHDTGWGREWICDSC 174
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.9 bits (58), Expect = 1.2
Identities = 9/22 (40%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Query: 22 CKICGKHYSNSSNLKQHIRLIH 43
C CGK ++ +S+L +H R +H
Sbjct: 15 CNECGKVFTQNSHLARHRR-VH 35
Score = 25.9 bits (58), Expect = 1.2
Identities = 9/22 (40%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Query: 94 CKICGKHYSNSSNLKQHIRLIH 115
C CGK ++ +S+L +H R +H
Sbjct: 15 CNECGKVFTQNSHLARHRR-VH 35
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding
protein; NMR {Homo sapiens}
Length = 37
Score = 25.4 bits (56), Expect = 1.3
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 25 CGKHYSNSSNLKQHIR 40
CGK Y +S+L+ H+R
Sbjct: 16 CGKVYGKTSHLRAHLR 31
Score = 25.4 bits (56), Expect = 1.3
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 97 CGKHYSNSSNLKQHIR 112
CGK Y +S+L+ H+R
Sbjct: 16 CGKVYGKTSHLRAHLR 31
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 25.6 bits (57), Expect = 1.5
Identities = 8/22 (36%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
Query: 22 CKICGKHYSNSSNLKQHIRLIH 43
C+ CGK + +S H R H
Sbjct: 15 CEECGKGFYTNSQCYSHQR-SH 35
Score = 25.6 bits (57), Expect = 1.5
Identities = 8/22 (36%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
Query: 94 CKICGKHYSNSSNLKQHIRLIH 115
C+ CGK + +S H R H
Sbjct: 15 CEECGKGFYTNSQCYSHQR-SH 35
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 25.6 bits (57), Expect = 1.6
Identities = 9/22 (40%), Positives = 10/22 (45%), Gaps = 1/22 (4%)
Query: 22 CKICGKHYSNSSNLKQHIRLIH 43
C CGK + S L H R H
Sbjct: 15 CTECGKAFCWKSQLIMHQR-TH 35
Score = 25.6 bits (57), Expect = 1.6
Identities = 9/22 (40%), Positives = 10/22 (45%), Gaps = 1/22 (4%)
Query: 94 CKICGKHYSNSSNLKQHIRLIH 115
C CGK + S L H R H
Sbjct: 15 CTECGKAFCWKSQLIMHQR-TH 35
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 44
Score = 25.6 bits (57), Expect = 1.6
Identities = 9/22 (40%), Positives = 10/22 (45%), Gaps = 1/22 (4%)
Query: 22 CKICGKHYSNSSNLKQHIRLIH 43
C CGK + S L H R H
Sbjct: 15 CNECGKAFIWKSLLIVHER-TH 35
Score = 25.6 bits (57), Expect = 1.6
Identities = 9/22 (40%), Positives = 10/22 (45%), Gaps = 1/22 (4%)
Query: 94 CKICGKHYSNSSNLKQHIRLIH 115
C CGK + S L H R H
Sbjct: 15 CNECGKAFIWKSLLIVHER-TH 35
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.6 bits (57), Expect = 1.6
Identities = 10/22 (45%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
Query: 22 CKICGKHYSNSSNLKQHIRLIH 43
C CGK +S S L H R H
Sbjct: 15 CNECGKTFSQKSILSAHQR-TH 35
Score = 25.6 bits (57), Expect = 1.6
Identities = 10/22 (45%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
Query: 94 CKICGKHYSNSSNLKQHIRLIH 115
C CGK +S S L H R H
Sbjct: 15 CNECGKTFSQKSILSAHQR-TH 35
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1,
nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga
maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A*
2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A*
2h4h_A* 3jr3_A* 2h59_A*
Length = 246
Score = 27.5 bits (62), Expect = 1.6
Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 11/61 (18%)
Query: 86 LH-SLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVISFHE 144
LH +++ YC C K Y+ ++ + + +P C C +R +++ F E
Sbjct: 115 LHGNVEEYYCVRCEKKYT-VEDVIKKLESSDVP---LCDDCNS------LIRPNIVFFGE 164
Query: 145 N 145
N
Sbjct: 165 N 165
Score = 26.3 bits (59), Expect = 3.4
Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 5/41 (12%)
Query: 14 LH-SLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLC 53
LH +++ YC C K Y+ ++ + + +P C C
Sbjct: 115 LHGNVEEYYCVRCEKKYT-VEDVIKKLESSDVP---LCDDC 151
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 26.8 bits (58), Expect = 1.6
Identities = 19/88 (21%), Positives = 30/88 (34%), Gaps = 18/88 (20%)
Query: 29 YSNSSNLKQHIRLIHLPGILFCPLCQKC-FKNKLYLRRHVGTYTHTPSYRSVPGASKPLH 87
Y+ S +Q I G + CP CQ K L++H+
Sbjct: 16 YAAGSLEEQWYLEIVDKGSVSCPTCQAVGRKTIEGLKKHMEN-----------------C 58
Query: 88 SLDARYCKICGKHYSNSSNLKQHIRLIH 115
+ C CGK + + +K H+ H
Sbjct: 59 KQEMFTCHHCGKQLRSLAGMKYHVMANH 86
Score = 24.8 bits (53), Expect = 8.0
Identities = 11/51 (21%), Positives = 20/51 (39%), Gaps = 2/51 (3%)
Query: 94 CKICGK-HYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVISFH 143
C C LK+H+ + C C K ++ ++ HV++ H
Sbjct: 37 CPTCQAVGRKTIEGLKKHME-NCKQEMFTCHHCGKQLRSLAGMKYHVMANH 86
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.6 bits (57), Expect = 1.6
Identities = 8/22 (36%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Query: 22 CKICGKHYSNSSNLKQHIRLIH 43
C CGK ++ S L+ H + H
Sbjct: 15 CSDCGKSFTWKSRLRIHQK-CH 35
Score = 25.6 bits (57), Expect = 1.6
Identities = 8/22 (36%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Query: 94 CKICGKHYSNSSNLKQHIRLIH 115
C CGK ++ S L+ H + H
Sbjct: 15 CSDCGKSFTWKSRLRIHQK-CH 35
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 25.6 bits (57), Expect = 1.7
Identities = 8/22 (36%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
Query: 22 CKICGKHYSNSSNLKQHIRLIH 43
C C K +S+ S L H + H
Sbjct: 13 CSCCEKAFSSKSYLLVHQQ-TH 33
Score = 25.6 bits (57), Expect = 1.7
Identities = 8/22 (36%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
Query: 94 CKICGKHYSNSSNLKQHIRLIH 115
C C K +S+ S L H + H
Sbjct: 13 CSCCEKAFSSKSYLLVHQQ-TH 33
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 25.7 bits (56), Expect = 1.8
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 22 CKICGKHYSNSSNLKQHIR 40
C+ICGK + + +L +H
Sbjct: 15 CEICGKIFRDVYHLNRHKL 33
Score = 25.7 bits (56), Expect = 1.8
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 94 CKICGKHYSNSSNLKQHIR 112
C+ICGK + + +L +H
Sbjct: 15 CEICGKIFRDVYHLNRHKL 33
Score = 23.7 bits (51), Expect = 7.8
Identities = 7/22 (31%), Positives = 14/22 (63%)
Query: 50 CPLCQKCFKNKLYLRRHVGTYT 71
C +C K F++ +L RH +++
Sbjct: 15 CEICGKIFRDVYHLNRHKLSHS 36
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 25.2 bits (56), Expect = 1.9
Identities = 9/22 (40%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 22 CKICGKHYSNSSNLKQHIRLIH 43
C CGK++ S L+ H R +H
Sbjct: 15 CDECGKNFCYISALRIHQR-VH 35
Score = 25.2 bits (56), Expect = 1.9
Identities = 9/22 (40%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 94 CKICGKHYSNSSNLKQHIRLIH 115
C CGK++ S L+ H R +H
Sbjct: 15 CDECGKNFCYISALRIHQR-VH 35
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 26.9 bits (59), Expect = 2.2
Identities = 11/53 (20%), Positives = 15/53 (28%), Gaps = 10/53 (18%)
Query: 74 PSYRSVPGASKPLHSLDAR-YCKICGKHYSNSSNLKQHIRLIHLPGILFCPLC 125
S G P +L+ C C + I G + C LC
Sbjct: 5 ESIDKRAGRRGP--NLNIVLTCPECKVYPPK-------IVERFSEGDVVCALC 48
Score = 26.2 bits (57), Expect = 3.9
Identities = 11/53 (20%), Positives = 15/53 (28%), Gaps = 10/53 (18%)
Query: 2 PSYRSVPGGSKPLHSLDAR-YCKICGKHYSNSSNLKQHIRLIHLPGILFCPLC 53
S G P +L+ C C + I G + C LC
Sbjct: 5 ESIDKRAGRRGP--NLNIVLTCPECKVYPPK-------IVERFSEGDVVCALC 48
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 24.9 bits (53), Expect = 2.9
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 122 CPLCQKCFKNKLYLRRHVISFH 143
CP+C FK K + HV S
Sbjct: 13 CPVCGLRFKRKDRMSYHVRSHD 34
Score = 24.1 bits (51), Expect = 6.1
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 50 CPLCQKCFKNKLYLRRHVGTY 70
CP+C FK K + HV ++
Sbjct: 13 CPVCGLRFKRKDRMSYHVRSH 33
>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin,
redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1
Length = 81
Score = 25.3 bits (56), Expect = 3.1
Identities = 4/22 (18%), Positives = 6/22 (27%)
Query: 123 PLCQKCFKNKLYLRRHVISFHE 144
C +C K + F
Sbjct: 9 NDCVQCHATKRAMENRGFDFEM 30
>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 66
Score = 25.2 bits (54), Expect = 4.0
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 10 GSKPLHSLDARYCKICGKHYSNSSNLKQH 38
GS L C +CGK +++++ L+QH
Sbjct: 4 GSSGLREAGILPCGLCGKVFTDANRLRQH 32
>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain
swapping, electron transport; 2.69A {Corynebacterium
ammoniagenes} SCOP: c.47.1.1
Length = 75
Score = 24.9 bits (55), Expect = 5.1
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 123 PLCQKCFKNKLYLRRHVISFHE 144
P C +C K L R ++++
Sbjct: 9 PACVQCTATKKALDRAGLAYNT 30
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 23.8 bits (52), Expect = 5.4
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 22 CKICGKHYSNSSNLKQHIR 40
C C + +S S +L H +
Sbjct: 14 CPDCDRSFSRSDHLALHRK 32
Score = 23.8 bits (52), Expect = 5.4
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 94 CKICGKHYSNSSNLKQHIR 112
C C + +S S +L H +
Sbjct: 14 CPDCDRSFSRSDHLALHRK 32
>2epa_A Krueppel-like factor 10; transforming growth
factor-beta-inducible early growth response protein 1,
TGFB-inducible early growth response protein 1; NMR
{Homo sapiens}
Length = 72
Score = 24.7 bits (54), Expect = 5.7
Identities = 10/16 (62%), Positives = 11/16 (68%)
Query: 25 CGKHYSNSSNLKQHIR 40
CGK Y SS+LK H R
Sbjct: 25 CGKTYFKSSHLKAHTR 40
Score = 24.7 bits (54), Expect = 5.7
Identities = 10/16 (62%), Positives = 11/16 (68%)
Query: 97 CGKHYSNSSNLKQHIR 112
CGK Y SS+LK H R
Sbjct: 25 CGKTYFKSSHLKAHTR 40
>2ct5_A Zinc finger BED domain containing protein 1; DREF homolog,
putative C-like transposable element, structural
genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.6
Length = 73
Score = 24.8 bits (53), Expect = 5.9
Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 3/26 (11%)
Query: 21 YCKICGKHYS---NSSNLKQHIRLIH 43
YC+IC + N+SNL H+ H
Sbjct: 31 YCRICMAQIAYSGNTSNLSYHLEKNH 56
Score = 24.8 bits (53), Expect = 5.9
Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 3/26 (11%)
Query: 93 YCKICGKHYS---NSSNLKQHIRLIH 115
YC+IC + N+SNL H+ H
Sbjct: 31 YCRICMAQIAYSGNTSNLSYHLEKNH 56
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30;
helix-turn-helix, Zn-binding protein, DNA-binding,
transcrip transcription regulation; HET: PE4; 1.70A
{Escherichia coli k-12} PDB: 3hi2_A
Length = 78
Score = 24.6 bits (53), Expect = 6.2
Identities = 10/49 (20%), Positives = 18/49 (36%), Gaps = 10/49 (20%)
Query: 50 CPLCQKCFKNKLYLRRHVGTYTHTPSYRSVPGASKPLHSLDARYCKICG 98
CP+C ++ + + +T +R G L + YC C
Sbjct: 5 CPVC-----HQGEMVSGIKDIPYT--FR---GRKTVLKGIHGLYCVHCE 43
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 25.1 bits (54), Expect = 6.6
Identities = 12/54 (22%), Positives = 17/54 (31%), Gaps = 4/54 (7%)
Query: 94 CKICGKHYSNSSNLKQHIRLIH----LPGILFCPLCQKCFKNKLYLRRHVISFH 143
CK C + + H+ H L C C K L H + +H
Sbjct: 21 CKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYH 74
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 23.0 bits (50), Expect = 8.3
Identities = 7/22 (31%), Positives = 14/22 (63%)
Query: 50 CPLCQKCFKNKLYLRRHVGTYT 71
C +C + F + +L+RH ++T
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHT 26
>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin
remodeling, DNA binding protein/DNA complex; HET: DNA;
NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB:
1yuj_A*
Length = 54
Score = 23.7 bits (50), Expect = 8.9
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 22 CKICGKHYSNSSNLKQHIRLIHL--PGI 47
C IC S NL++H+ L H PG+
Sbjct: 27 CPICYAVIRQSRNLRRHLELRHFAKPGV 54
Score = 23.7 bits (50), Expect = 8.9
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 94 CKICGKHYSNSSNLKQHIRLIHL--PGI 119
C IC S NL++H+ L H PG+
Sbjct: 27 CPICYAVIRQSRNLRRHLELRHFAKPGV 54
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC),
C2H2, APO metal-binding, nucleus, phosphoprotein,
transcription, TRAN regulation; 1.80A {Homo sapiens}
Length = 48
Score = 23.6 bits (50), Expect = 9.5
Identities = 11/23 (47%), Positives = 11/23 (47%)
Query: 22 CKICGKHYSNSSNLKQHIRLIHL 44
C ICGK Y N L H HL
Sbjct: 10 CDICGKRYKNRPGLSYHYAHSHL 32
Score = 23.6 bits (50), Expect = 9.5
Identities = 11/23 (47%), Positives = 11/23 (47%)
Query: 94 CKICGKHYSNSSNLKQHIRLIHL 116
C ICGK Y N L H HL
Sbjct: 10 CDICGKRYKNRPGLSYHYAHSHL 32
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 30
Score = 22.9 bits (49), Expect = 9.7
Identities = 8/23 (34%), Positives = 10/23 (43%)
Query: 122 CPLCQKCFKNKLYLRRHVISFHE 144
C LC + F + L RH H
Sbjct: 5 CGLCNRAFTRRDLLIRHAQKIHS 27
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.326 0.140 0.467
Gapped
Lambda K H
0.267 0.0472 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,220,577
Number of extensions: 117484
Number of successful extensions: 1458
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1191
Number of HSP's successfully gapped: 455
Length of query: 147
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 62
Effective length of database: 4,328,508
Effective search space: 268367496
Effective search space used: 268367496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (24.8 bits)