RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8937
(147 letters)
>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 53
Score = 35.4 bits (81), Expect = 2e-04
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 25 CGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRH 66
CGK +++ S +H+ + C +C K FK K +L H
Sbjct: 8 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGH 49
Score = 35.4 bits (81), Expect = 2e-04
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 97 CGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRH 138
CGK +++ S +H+ + C +C K FK K +L H
Sbjct: 8 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGH 49
Score = 27.7 bits (61), Expect = 0.13
Identities = 13/60 (21%), Positives = 21/60 (35%), Gaps = 16/60 (26%)
Query: 53 CQKCFKNKLYLRRHVGTYTHTPSYRSVPGASKPLHSLDARYCKICGKHYSNSSNLKQHIR 112
C K F +K RH+ + Y C +CGK + +L H++
Sbjct: 8 CGKSFTHKSQRDRHMSMHLGLRPYG----------------CGVCGKKFKMKHHLVGHMK 51
Score = 25.0 bits (54), Expect = 1.2
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 22 CKICGKHYSNSSNLKQHIR 40
C +CGK + +L H++
Sbjct: 33 CGVCGKKFKMKHHLVGHMK 51
>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 32.7 bits (75), Expect = 0.001
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 22 CKICGKHYSNSSNLKQHIRLIH 43
C+ CGK +S +L HI+ +H
Sbjct: 8 CQSCGKGFSRPDHLNGHIKQVH 29
Score = 32.7 bits (75), Expect = 0.001
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 94 CKICGKHYSNSSNLKQHIRLIH 115
C+ CGK +S +L HI+ +H
Sbjct: 8 CQSCGKGFSRPDHLNGHIKQVH 29
Score = 23.4 bits (51), Expect = 3.2
Identities = 7/22 (31%), Positives = 9/22 (40%)
Query: 122 CPLCQKCFKNKLYLRRHVISFH 143
C C K F +L H+ H
Sbjct: 8 CQSCGKGFSRPDHLNGHIKQVH 29
Score = 22.6 bits (49), Expect = 5.6
Identities = 8/24 (33%), Positives = 10/24 (41%), Gaps = 1/24 (4%)
Query: 50 CPLCQKCFKNKLYLRRHVGTYTHT 73
C C K F +L H+ HT
Sbjct: 8 CQSCGKGFSRPDHLNGHI-KQVHT 30
>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 31.1 bits (71), Expect = 0.005
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 22 CKICGKHYSNSSNLKQHIRLIH 43
C IC ++ S +K HI H
Sbjct: 11 CYICHARFTQSGTMKMHILQKH 32
Score = 31.1 bits (71), Expect = 0.005
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 94 CKICGKHYSNSSNLKQHIRLIH 115
C IC ++ S +K HI H
Sbjct: 11 CYICHARFTQSGTMKMHILQKH 32
Score = 23.4 bits (51), Expect = 2.6
Identities = 5/22 (22%), Positives = 10/22 (45%)
Query: 122 CPLCQKCFKNKLYLRRHVISFH 143
C +C F ++ H++ H
Sbjct: 11 CYICHARFTQSGTMKMHILQKH 32
>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 29.1 bits (66), Expect = 0.019
Identities = 10/22 (45%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Query: 22 CKICGKHYSNSSNLKQHIRLIH 43
C+IC +++S S +L HIR H
Sbjct: 6 CRICMRNFSRSDHLTTHIR-TH 26
Score = 29.1 bits (66), Expect = 0.019
Identities = 10/22 (45%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Query: 94 CKICGKHYSNSSNLKQHIRLIH 115
C+IC +++S S +L HIR H
Sbjct: 6 CRICMRNFSRSDHLTTHIR-TH 26
Score = 21.8 bits (47), Expect = 8.4
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 50 CPLCQKCFKNKLYLRRHVGTYT 71
C +C + F +L H+ T+T
Sbjct: 6 CRICMRNFSRSDHLTTHIRTHT 27
>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 29
Score = 28.7 bits (65), Expect = 0.025
Identities = 7/22 (31%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 22 CKICGKHYSNSSNLKQHIRLIH 43
C++C + ++ +LK+H R H
Sbjct: 5 CEVCTRAFARQEHLKRHYR-SH 25
Score = 28.7 bits (65), Expect = 0.025
Identities = 7/22 (31%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 94 CKICGKHYSNSSNLKQHIRLIH 115
C++C + ++ +LK+H R H
Sbjct: 5 CEVCTRAFARQEHLKRHYR-SH 25
Score = 22.6 bits (49), Expect = 4.3
Identities = 7/22 (31%), Positives = 14/22 (63%)
Query: 50 CPLCQKCFKNKLYLRRHVGTYT 71
C +C + F + +L+RH ++T
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHT 26
>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 33
Score = 28.7 bits (65), Expect = 0.029
Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 22 CKICGKHYSNSSNLKQHIRLIH 43
C CGK +S SS L QH R +H
Sbjct: 10 CVECGKAFSRSSILVQHQR-VH 30
Score = 28.7 bits (65), Expect = 0.029
Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 94 CKICGKHYSNSSNLKQHIRLIH 115
C CGK +S SS L QH R +H
Sbjct: 10 CVECGKAFSRSSILVQHQR-VH 30
Score = 22.6 bits (49), Expect = 4.6
Identities = 7/22 (31%), Positives = 9/22 (40%)
Query: 50 CPLCQKCFKNKLYLRRHVGTYT 71
C C K F L +H +T
Sbjct: 10 CVECGKAFSRSSILVQHQRVHT 31
>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 67
Score = 29.3 bits (66), Expect = 0.043
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 21 YCKICGKHYSNSSNLKQHIR 40
C C +++ +S+NLK H R
Sbjct: 17 RCLACARYFIDSTNLKTHFR 36
Score = 29.3 bits (66), Expect = 0.043
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 93 YCKICGKHYSNSSNLKQHIR 112
C C +++ +S+NLK H R
Sbjct: 17 RCLACARYFIDSTNLKTHFR 36
Score = 22.7 bits (49), Expect = 9.6
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 46 GILFCPLCQKCFKNKLYLRRHVGTYTH 72
G+ C C + F + L+ H + H
Sbjct: 14 GLHRCLACARYFIDSTNLKTHFRSKDH 40
>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 29
Score = 27.7 bits (62), Expect = 0.062
Identities = 8/22 (36%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Query: 22 CKICGKHYSNSSNLKQHIRLIH 43
C C K + S +L +HI+ H
Sbjct: 5 CPECPKRFMRSDHLSKHIK-TH 25
Score = 27.7 bits (62), Expect = 0.062
Identities = 8/22 (36%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Query: 94 CKICGKHYSNSSNLKQHIRLIH 115
C C K + S +L +HI+ H
Sbjct: 5 CPECPKRFMRSDHLSKHIK-TH 25
>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 27.3 bits (61), Expect = 0.12
Identities = 6/22 (27%), Positives = 8/22 (36%)
Query: 22 CKICGKHYSNSSNLKQHIRLIH 43
C C K + L H + H
Sbjct: 11 CSHCDKTFRQKQLLDMHFKRYH 32
Score = 27.3 bits (61), Expect = 0.12
Identities = 6/22 (27%), Positives = 8/22 (36%)
Query: 94 CKICGKHYSNSSNLKQHIRLIH 115
C C K + L H + H
Sbjct: 11 CSHCDKTFRQKQLLDMHFKRYH 32
>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 26
Score = 26.8 bits (60), Expect = 0.15
Identities = 11/22 (50%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 22 CKICGKHYSNSSNLKQHIRLIH 43
C CGK +S +S L H R IH
Sbjct: 5 CLECGKAFSQNSGLINHQR-IH 25
Score = 26.8 bits (60), Expect = 0.15
Identities = 11/22 (50%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 94 CKICGKHYSNSSNLKQHIRLIH 115
C CGK +S +S L H R IH
Sbjct: 5 CLECGKAFSQNSGLINHQR-IH 25
>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 32
Score = 26.5 bits (59), Expect = 0.22
Identities = 5/19 (26%), Positives = 10/19 (52%), Gaps = 1/19 (5%)
Query: 25 CGKHYSNSSNLKQHIRLIH 43
C K + + +L +H + H
Sbjct: 11 CDKAFVRNHDLIRHKK-SH 28
Score = 26.5 bits (59), Expect = 0.22
Identities = 5/19 (26%), Positives = 10/19 (52%), Gaps = 1/19 (5%)
Query: 97 CGKHYSNSSNLKQHIRLIH 115
C K + + +L +H + H
Sbjct: 11 CDKAFVRNHDLIRHKK-SH 28
>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 30
Score = 26.2 bits (57), Expect = 0.23
Identities = 8/23 (34%), Positives = 16/23 (69%)
Query: 119 ILFCPLCQKCFKNKLYLRRHVIS 141
+ C +CQ+ F+ ++ LR H++S
Sbjct: 4 VFTCSVCQETFRRRMELRLHMVS 26
Score = 25.5 bits (55), Expect = 0.45
Identities = 8/25 (32%), Positives = 17/25 (68%)
Query: 47 ILFCPLCQKCFKNKLYLRRHVGTYT 71
+ C +CQ+ F+ ++ LR H+ ++T
Sbjct: 4 VFTCSVCQETFRRRMELRLHMVSHT 28
>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 30
Score = 26.1 bits (58), Expect = 0.25
Identities = 10/19 (52%), Positives = 11/19 (57%), Gaps = 1/19 (5%)
Query: 25 CGKHYSNSSNLKQHIRLIH 43
C K YS NLK H+R H
Sbjct: 10 CRKSYSRLENLKTHLR-SH 27
Score = 26.1 bits (58), Expect = 0.25
Identities = 10/19 (52%), Positives = 11/19 (57%), Gaps = 1/19 (5%)
Query: 97 CGKHYSNSSNLKQHIRLIH 115
C K YS NLK H+R H
Sbjct: 10 CRKSYSRLENLKTHLR-SH 27
>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 29
Score = 25.7 bits (57), Expect = 0.33
Identities = 9/19 (47%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
Query: 25 CGKHYSNSSNLKQHIRLIH 43
C + +S S++L +HIR IH
Sbjct: 10 CDRRFSRSADLTRHIR-IH 27
Score = 25.7 bits (57), Expect = 0.33
Identities = 9/19 (47%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
Query: 97 CGKHYSNSSNLKQHIRLIH 115
C + +S S++L +HIR IH
Sbjct: 10 CDRRFSRSADLTRHIR-IH 27
>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger
domain) {Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 25.8 bits (57), Expect = 0.35
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 25 CGKHYSNSSNLKQHIR 40
C K ++ S+NLK HI
Sbjct: 10 CNKKFAQSTNLKSHIL 25
Score = 25.8 bits (57), Expect = 0.35
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 97 CGKHYSNSSNLKQHIR 112
C K ++ S+NLK HI
Sbjct: 10 CNKKFAQSTNLKSHIL 25
>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 31
Score = 25.7 bits (57), Expect = 0.37
Identities = 8/22 (36%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Query: 22 CKICGKHYSNSSNLKQHIRLIH 43
CGK ++ S L++H R H
Sbjct: 7 WSYCGKRFTRSDELQRHKR-TH 27
Score = 25.7 bits (57), Expect = 0.37
Identities = 8/22 (36%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Query: 94 CKICGKHYSNSSNLKQHIRLIH 115
CGK ++ S L++H R H
Sbjct: 7 WSYCGKRFTRSDELQRHKR-TH 27
>d1wpwa_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH
{Sulfolobus tokodaii [TaxId: 111955]}
Length = 336
Score = 27.9 bits (61), Expect = 0.45
Identities = 17/110 (15%), Positives = 36/110 (32%), Gaps = 8/110 (7%)
Query: 40 RLIHLPGILFCPLCQKCFKNKLYLRRHVGTYTHTPSYRSVPGASKPLHSLDARYCKI--- 96
+ IL P+ + + LR+ Y + +S+PG ++D +
Sbjct: 61 IIDKADIILKGPVGESAADVVVKLRQIYDMYANIRPAKSIPGIDTKYGNVDILIVRENTE 120
Query: 97 ---CGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVISFH 143
G + S + +++I + + L R+ V H
Sbjct: 121 DLYKGFEHIVSDGVAVGMKIITRFASE--RIAKVGLNFALRRRKKVTCVH 168
>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 37
Score = 25.5 bits (56), Expect = 0.48
Identities = 7/23 (30%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 22 CKICGKHYSNSSNLKQHIRLIHL 44
C C + +S S +L H + H+
Sbjct: 14 CPDCDRSFSRSDHLALHRK-RHM 35
Score = 25.5 bits (56), Expect = 0.48
Identities = 7/23 (30%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 94 CKICGKHYSNSSNLKQHIRLIHL 116
C C + +S S +L H + H+
Sbjct: 14 CPDCDRSFSRSDHLALHRK-RHM 35
>d1weoa_ g.44.1.1 (A:) Cellulose synthase A catalytic subunit 7,
IRX3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 93
Score = 26.3 bits (58), Expect = 0.64
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 9 GGSKPLHSLDARYCKICGKH 28
G KPL +LD ++C+ICG
Sbjct: 6 SGPKPLKNLDGQFCEICGDQ 25
Score = 24.4 bits (53), Expect = 2.8
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 81 GASKPLHSLDARYCKICGKH 100
KPL +LD ++C+ICG
Sbjct: 6 SGPKPLKNLDGQFCEICGDQ 25
>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 35
Score = 24.3 bits (53), Expect = 1.4
Identities = 6/22 (27%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 22 CKICGKHYSNSSNLKQHIRLIH 43
C+IC ++ +N +H++ +H
Sbjct: 10 CRICLSAFTTKANCARHLK-VH 30
Score = 24.3 bits (53), Expect = 1.4
Identities = 6/22 (27%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 94 CKICGKHYSNSSNLKQHIRLIH 115
C+IC ++ +N +H++ +H
Sbjct: 10 CRICLSAFTTKANCARHLK-VH 30
Score = 22.8 bits (49), Expect = 5.1
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 50 CPLCQKCFKNKLYLRRHVGTYTHTPS 75
C +C F K RH+ +T T S
Sbjct: 10 CRICLSAFTTKANCARHLKVHTDTLS 35
>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger
domain) {Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 23.9 bits (52), Expect = 1.6
Identities = 10/19 (52%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
Query: 25 CGKHYSNSSNLKQHIRLIH 43
CGK +S NL+ H+R IH
Sbjct: 10 CGKRFSLDFNLRTHVR-IH 27
Score = 23.9 bits (52), Expect = 1.6
Identities = 10/19 (52%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
Query: 97 CGKHYSNSSNLKQHIRLIH 115
CGK +S NL+ H+R IH
Sbjct: 10 CGKRFSLDFNLRTHVR-IH 27
>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 53
Score = 24.6 bits (53), Expect = 1.7
Identities = 7/17 (41%), Positives = 14/17 (82%)
Query: 22 CKICGKHYSNSSNLKQH 38
C +CGK +++++ L+QH
Sbjct: 9 CGLCGKVFTDANRLRQH 25
Score = 24.6 bits (53), Expect = 1.7
Identities = 7/17 (41%), Positives = 14/17 (82%)
Query: 94 CKICGKHYSNSSNLKQH 110
C +CGK +++++ L+QH
Sbjct: 9 CGLCGKVFTDANRLRQH 25
Score = 23.8 bits (51), Expect = 3.3
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 46 GILFCPLCQKCFKNKLYLRRH 66
GIL C LC K F + LR+H
Sbjct: 5 GILPCGLCGKVFTDANRLRQH 25
Score = 23.8 bits (51), Expect = 3.3
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 118 GILFCPLCQKCFKNKLYLRRH 138
GIL C LC K F + LR+H
Sbjct: 5 GILPCGLCGKVFTDANRLRQH 25
>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 23.9 bits (52), Expect = 2.0
Identities = 7/22 (31%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 22 CKICGKHYSNSSNLKQHIRLIH 43
CGK ++ +LK+H++ +H
Sbjct: 6 EPACGKSFNFKKHLKEHMK-LH 26
Score = 23.9 bits (52), Expect = 2.0
Identities = 7/22 (31%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 94 CKICGKHYSNSSNLKQHIRLIH 115
CGK ++ +LK+H++ +H
Sbjct: 6 EPACGKSFNFKKHLKEHMK-LH 26
>d2ct5a1 g.37.1.6 (A:8-67) Zinc finger BED domain-containing
protein 1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 60
Score = 24.2 bits (52), Expect = 2.3
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 5/37 (13%)
Query: 21 YCKICGK---HYSNSSNLKQHIRLIHLPGILFCPLCQ 54
YC+IC + N+SNL H+ H FC +
Sbjct: 24 YCRICMAQIAYSGNTSNLSYHLEKNH--PEEFCEFVK 58
Score = 24.2 bits (52), Expect = 2.3
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 5/37 (13%)
Query: 93 YCKICGK---HYSNSSNLKQHIRLIHLPGILFCPLCQ 126
YC+IC + N+SNL H+ H FC +
Sbjct: 24 YCRICMAQIAYSGNTSNLSYHLEKNH--PEEFCEFVK 58
>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 31
Score = 23.2 bits (50), Expect = 2.9
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 122 CPLCQKCFKNKLYLRRHVISFH 143
C LC + F + L RH H
Sbjct: 4 CGLCNRAFTRRDLLIRHAQKIH 25
>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing
protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId:
9606]}
Length = 38
Score = 23.2 bits (50), Expect = 3.3
Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Query: 22 CKICGKHYSNSSNLKQHIRLIH 43
C CGK +S+SS+L +H R H
Sbjct: 15 CDECGKSFSHSSDLSKHRR-TH 35
Score = 23.2 bits (50), Expect = 3.3
Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Query: 94 CKICGKHYSNSSNLKQHIRLIH 115
C CGK +S+SS+L +H R H
Sbjct: 15 CDECGKSFSHSSDLSKHRR-TH 35
>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger
peptide) {Drosophila melanogaster [TaxId: 7227]}
Length = 26
Score = 22.7 bits (48), Expect = 4.1
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 22 CKICGKHYSNSSNLKQHIRLIH 43
C C K ++ N+ H+++IH
Sbjct: 4 CPFCFKEFTRKDNMTAHVKIIH 25
Score = 22.7 bits (48), Expect = 4.1
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 94 CKICGKHYSNSSNLKQHIRLIH 115
C C K ++ N+ H+++IH
Sbjct: 4 CPFCFKEFTRKDNMTAHVKIIH 25
>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster
[TaxId: 7227]}
Length = 54
Score = 23.2 bits (49), Expect = 4.6
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 22 CKICGKHYSNSSNLKQHIRLIHL--PGI 47
C IC S NL++H+ L H PG+
Sbjct: 27 CPICYAVIRQSRNLRRHLELRHFAKPGV 54
Score = 23.2 bits (49), Expect = 4.6
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 94 CKICGKHYSNSSNLKQHIRLIHL--PGI 119
C IC S NL++H+ L H PG+
Sbjct: 27 CPICYAVIRQSRNLRRHLELRHFAKPGV 54
>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger
domain) {Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 22.3 bits (47), Expect = 5.5
Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Query: 22 CKICGKHYSNSSNLKQHIRLIH 43
C CGK + SS LK+H +L+H
Sbjct: 5 CAECGKAFVESSKLKRH-QLVH 25
Score = 22.3 bits (47), Expect = 5.5
Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Query: 94 CKICGKHYSNSSNLKQHIRLIH 115
C CGK + SS LK+H +L+H
Sbjct: 5 CAECGKAFVESSKLKRH-QLVH 25
>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 27
Score = 22.3 bits (47), Expect = 6.0
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 50 CPLCQKCFKNKLYLRRH 66
CP C K F +K YL+ H
Sbjct: 3 CPTCHKKFLSKYYLKVH 19
Score = 22.3 bits (47), Expect = 6.0
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 122 CPLCQKCFKNKLYLRRH 138
CP C K F +K YL+ H
Sbjct: 3 CPTCHKKFLSKYYLKVH 19
>d1io2a_ c.55.3.1 (A:) Class II ribonuclease H (RNase HII) {Archaeon
Thermococcus kodakaraensis [TaxId: 311400]}
Length = 213
Score = 24.3 bits (52), Expect = 6.1
Identities = 9/49 (18%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Query: 11 SKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKN 59
+ + L Y +I G Y + + + + F P+ +K +K
Sbjct: 153 DRAVEKLKEEYGEI-GSGYPSDPRTRAFLENYYREHGEFPPIVRKGWKT 200
Score = 24.3 bits (52), Expect = 6.1
Identities = 9/49 (18%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Query: 83 SKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKN 131
+ + L Y +I G Y + + + + F P+ +K +K
Sbjct: 153 DRAVEKLKEEYGEI-GSGYPSDPRTRAFLENYYREHGEFPPIVRKGWKT 200
>d2yrka1 g.37.1.4 (A:8-55) Zinc finger homeobox protein 4, ZFHX4
{Human (Homo sapiens) [TaxId: 9606]}
Length = 48
Score = 22.9 bits (49), Expect = 6.3
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 22 CKICGKHYSNSSNLKQHI 39
C +CG YS +++ HI
Sbjct: 9 CTLCGVKYSARLSIRDHI 26
Score = 22.9 bits (49), Expect = 6.3
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 94 CKICGKHYSNSSNLKQHI 111
C +CG YS +++ HI
Sbjct: 9 CTLCGVKYSARLSIRDHI 26
>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 22.1 bits (47), Expect = 6.5
Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 22 CKICGKHYSNSSNLKQHIRLIHL 44
C ICG+ ++ S K+H + IHL
Sbjct: 6 CDICGRKFARSDERKRHTK-IHL 27
Score = 22.1 bits (47), Expect = 6.5
Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 94 CKICGKHYSNSSNLKQHIRLIHL 116
C ICG+ ++ S K+H + IHL
Sbjct: 6 CDICGRKFARSDERKRHTK-IHL 27
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.326 0.140 0.467
Gapped
Lambda K H
0.267 0.0611 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 575,076
Number of extensions: 26082
Number of successful extensions: 327
Number of sequences better than 10.0: 1
Number of HSP's gapped: 324
Number of HSP's successfully gapped: 164
Length of query: 147
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 70
Effective length of database: 1,350,386
Effective search space: 94527020
Effective search space used: 94527020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 49 (22.9 bits)