BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8938
(75 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|F6QV99|ATAD1_BOVIN ATPase family AAA domain-containing protein 1 OS=Bos taurus
GN=ATAD1 PE=2 SV=2
Length = 361
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 52/74 (70%)
Query: 2 EAERKLKTLKINMDSFTDHEMSIASHLVDPADINVSWEHIAGLDGTIKDLKQTVIFPIKH 61
+AE+ +K + + +++EMSIA+HLVDP +++V+W IAGLD I DLK TVI PIK
Sbjct: 54 QAEKLMKQIGVKNVKLSEYEMSIAAHLVDPLNMHVTWSDIAGLDDVITDLKDTVILPIKK 113
Query: 62 KEMFAKSKLTKAPK 75
K +F S+L + PK
Sbjct: 114 KHLFENSRLLQPPK 127
>sp|Q505J9|ATAD1_RAT ATPase family AAA domain-containing protein 1 OS=Rattus norvegicus
GN=Atad1 PE=1 SV=1
Length = 361
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 52/74 (70%)
Query: 2 EAERKLKTLKINMDSFTDHEMSIASHLVDPADINVSWEHIAGLDGTIKDLKQTVIFPIKH 61
+AE+ +K + + +++EMSIA+HLVDP +++V+W IAGLD I DLK TVI PIK
Sbjct: 54 QAEKLMKQIGVKNVKLSEYEMSIAAHLVDPLNMHVTWSDIAGLDDVITDLKDTVILPIKK 113
Query: 62 KEMFAKSKLTKAPK 75
K +F S+L + PK
Sbjct: 114 KHLFENSRLLQPPK 127
>sp|Q9D5T0|ATAD1_MOUSE ATPase family AAA domain-containing protein 1 OS=Mus musculus
GN=Atad1 PE=1 SV=1
Length = 361
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 52/74 (70%)
Query: 2 EAERKLKTLKINMDSFTDHEMSIASHLVDPADINVSWEHIAGLDGTIKDLKQTVIFPIKH 61
+AE+ +K + + +++EMSIA+HLVDP +++V+W IAGLD I DLK TVI PIK
Sbjct: 54 QAEKLMKQIGVKNVKLSEYEMSIAAHLVDPLNMHVTWSDIAGLDDVITDLKDTVILPIKK 113
Query: 62 KEMFAKSKLTKAPK 75
K +F S+L + PK
Sbjct: 114 KHLFENSRLLQPPK 127
>sp|Q8NBU5|ATAD1_HUMAN ATPase family AAA domain-containing protein 1 OS=Homo sapiens
GN=ATAD1 PE=1 SV=1
Length = 361
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 52/74 (70%)
Query: 2 EAERKLKTLKINMDSFTDHEMSIASHLVDPADINVSWEHIAGLDGTIKDLKQTVIFPIKH 61
+AE+ +K + + +++EMSIA+HLVDP +++V+W IAGLD I DLK TVI PIK
Sbjct: 54 QAEKLMKQIGVKNVKLSEYEMSIAAHLVDPLNMHVTWSDIAGLDDVITDLKDTVILPIKK 113
Query: 62 KEMFAKSKLTKAPK 75
K +F S+L + PK
Sbjct: 114 KHLFENSRLLQPPK 127
>sp|B4F6J6|ATAD1_XENTR ATPase family AAA domain-containing protein 1 OS=Xenopus tropicalis
GN=atad1 PE=2 SV=2
Length = 360
Score = 75.9 bits (185), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 50/74 (67%)
Query: 2 EAERKLKTLKINMDSFTDHEMSIASHLVDPADINVSWEHIAGLDGTIKDLKQTVIFPIKH 61
+AE+ ++ + + T++EMSIA+HLVDP + V+W IAGLD I DLK TVI PI+
Sbjct: 54 QAEKLMRQIGVKNVKLTEYEMSIAAHLVDPLSMLVTWSDIAGLDDVITDLKDTVILPIRK 113
Query: 62 KEMFAKSKLTKAPK 75
+ +F S+L + PK
Sbjct: 114 RYLFENSRLLQPPK 127
>sp|Q503W7|ATD1B_DANRE ATPase family AAA domain-containing protein 1-B OS=Danio rerio
GN=atad1b PE=2 SV=2
Length = 362
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 50/74 (67%)
Query: 2 EAERKLKTLKINMDSFTDHEMSIASHLVDPADINVSWEHIAGLDGTIKDLKQTVIFPIKH 61
+AE+ ++ + + +++EMSIA+HLVDP + ++W IAGLD I +LK TVI PI+
Sbjct: 58 QAEKLMRQIGVQNVKLSEYEMSIAAHLVDPLTMQITWHDIAGLDEVITELKDTVILPIQK 117
Query: 62 KEMFAKSKLTKAPK 75
+ +F S+L + PK
Sbjct: 118 RHLFEGSRLLQPPK 131
>sp|Q7ZZ25|ATD1A_DANRE ATPase family AAA domain-containing protein 1-A OS=Danio rerio
GN=atad1a PE=2 SV=2
Length = 380
Score = 67.4 bits (163), Expect = 2e-11, Method: Composition-based stats.
Identities = 31/73 (42%), Positives = 49/73 (67%)
Query: 3 AERKLKTLKINMDSFTDHEMSIASHLVDPADINVSWEHIAGLDGTIKDLKQTVIFPIKHK 62
AE+ +K + + S T++EM+IA+ LVDP I V+W +AGLD I +++ TVI P + +
Sbjct: 58 AEQLMKQIGVEGVSLTEYEMNIATLLVDPRSIKVTWRDVAGLDEIISEMQDTVILPFQKR 117
Query: 63 EMFAKSKLTKAPK 75
+F+ SKL + PK
Sbjct: 118 HLFSGSKLLQPPK 130
>sp|P28737|MSP1_YEAST Protein MSP1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=MSP1 PE=1 SV=2
Length = 362
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 38/55 (69%)
Query: 20 HEMSIASHLVDPADINVSWEHIAGLDGTIKDLKQTVIFPIKHKEMFAKSKLTKAP 74
+E +I S +V P +IN++++ I GLD I DL ++VI+P+ E+++ S L +AP
Sbjct: 72 YERTILSSIVTPDEINITFQDIGGLDPLISDLHESVIYPLMMPEVYSNSPLLQAP 126
>sp|Q9P7J5|YJNA_SCHPO Uncharacterized AAA domain-containing protein C24B10.10c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPCC24B10.10c PE=3 SV=1
Length = 355
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/64 (39%), Positives = 44/64 (68%), Gaps = 5/64 (7%)
Query: 2 EAERKLKTLKINMDSFTDHEMSIASHLVDPADINVSWEHIAGLDGTIKDLKQTVIFPIKH 61
E ++L+TL++N ++E +AS LV P++I+VS++ I G+D + L Q V+FP+K+
Sbjct: 57 EQVKELETLELN-----EYEQIVASQLVLPSEIDVSFDDIGGMDEHVNQLLQDVLFPLKY 111
Query: 62 KEMF 65
E+F
Sbjct: 112 PEVF 115
>sp|Q07590|SAV_SULAC Protein SAV OS=Sulfolobus acidocaldarius (strain ATCC 33909 / DSM
639 / JCM 8929 / NBRC 15157 / NCIMB 11770) GN=sav PE=3
SV=2
Length = 780
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 7 LKTLKINMDSFTDHEMSIASHLVDPADINV---SWEHIAGLDGTIKDLKQTVIFPIKHKE 63
+K LK++M+ F + SI L+ + V +W I GLD + L++ V +P++ E
Sbjct: 452 IKELKVSMNDFLNALKSIQPSLLREVYVEVPKVNWNDIGGLDNVKQQLREAVEWPLRFPE 511
Query: 64 MFAKSKLT 71
+F KS +T
Sbjct: 512 LFTKSGVT 519
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 21/32 (65%)
Query: 36 VSWEHIAGLDGTIKDLKQTVIFPIKHKEMFAK 67
VSWE I L+ + +++ V +P++H E+F +
Sbjct: 209 VSWEDIGDLEEAKQKIREIVEWPMRHPELFQR 240
>sp|Q9SCN8|CD48D_ARATH Cell division control protein 48 homolog D OS=Arabidopsis thaliana
GN=CDC48D PE=1 SV=1
Length = 815
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 24/33 (72%)
Query: 35 NVSWEHIAGLDGTIKDLKQTVIFPIKHKEMFAK 67
NVSWE I GL+ ++L++TV +P++H E F K
Sbjct: 477 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEK 509
>sp|Q9LZF6|CD48E_ARATH Cell division control protein 48 homolog E OS=Arabidopsis thaliana
GN=CDC48E PE=1 SV=2
Length = 810
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 24/33 (72%)
Query: 35 NVSWEHIAGLDGTIKDLKQTVIFPIKHKEMFAK 67
NVSWE I GL+ ++L++TV +P++H E F K
Sbjct: 476 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEK 508
>sp|P54774|CDC48_SOYBN Cell division cycle protein 48 homolog OS=Glycine max GN=CDC48 PE=2
SV=1
Length = 807
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 24/33 (72%)
Query: 35 NVSWEHIAGLDGTIKDLKQTVIFPIKHKEMFAK 67
NVSWE I GL+ ++L++TV +P++H E F K
Sbjct: 477 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEK 509
>sp|Q8SSJ5|CDC48_ENCCU Cell division control protein 48 OS=Encephalitozoon cuniculi
(strain GB-M1) GN=CDC48 PE=1 SV=1
Length = 780
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 13/75 (17%)
Query: 7 LKTLKINMDSFTDHEMSIASHLVDPADI--------NVSWEHIAGLDGTIKDLKQTVIFP 58
L +LK+N ++F A DP+ + NV W I GL+ ++L++TV +P
Sbjct: 446 LASLKVNSENF-----RYAIEHTDPSSLRETVIQSPNVKWSDIGGLEQVKQELRETVQYP 500
Query: 59 IKHKEMFAKSKLTKA 73
+++ E F K +T A
Sbjct: 501 VEYPEKFIKFGMTPA 515
>sp|Q58556|Y1156_METJA Cell division cycle protein 48 homolog MJ1156 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ1156 PE=3 SV=1
Length = 903
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 13/69 (18%)
Query: 7 LKTLKINMDSFTDHEMSIASHLVDPADI--------NVSWEHIAGLDGTIKDLKQTVIFP 58
L LK+ MD F + A V+P+ + NV WE I GL+ ++L++ V +P
Sbjct: 417 LDNLKVTMDDFKE-----ALKDVEPSAMREVLVEVPNVKWEDIGGLEEVKQELREAVEWP 471
Query: 59 IKHKEMFAK 67
+K KE+F K
Sbjct: 472 LKAKEVFEK 480
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 22/33 (66%)
Query: 35 NVSWEHIAGLDGTIKDLKQTVIFPIKHKEMFAK 67
+V++E I GL +K +++ + P++H E+F K
Sbjct: 175 DVTYEDIGGLKEEVKKVREMIELPMRHPELFEK 207
>sp|P52917|VPS4_YEAST Vacuolar protein sorting-associated protein 4 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=VPS4 PE=1
SV=1
Length = 437
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 35 NVSWEHIAGLDGTIKDLKQTVIFPIKHKEMFAKSK 69
NV WE +AGL+G + LK+ VI P+K +F ++
Sbjct: 129 NVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNR 163
>sp|P54609|CD48A_ARATH Cell division control protein 48 homolog A OS=Arabidopsis thaliana
GN=CDC48A PE=1 SV=1
Length = 809
Score = 38.5 bits (88), Expect = 0.014, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 35 NVSWEHIAGLDGTIKDLKQTVIFPIKHKEMFAK 67
NVSW I GL+ ++L++TV +P++H E F K
Sbjct: 476 NVSWNDIGGLENVKRELQETVQYPVEHPEKFEK 508
>sp|P25694|CDC48_YEAST Cell division control protein 48 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=CDC48 PE=1 SV=3
Length = 835
Score = 37.7 bits (86), Expect = 0.022, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 41/72 (56%), Gaps = 7/72 (9%)
Query: 7 LKTLKINMDSF-----TDHEMSIASHLVDPADINVSWEHIAGLDGTIKDLKQTVIFPIKH 61
L +L + MD+F + ++ +V+ +NV+W+ + GLD ++LK+TV +P+ H
Sbjct: 452 LDSLGVTMDNFRFALGNSNPSALRETVVE--SVNVTWDDVGGLDEIKEELKETVEYPVLH 509
Query: 62 KEMFAKSKLTKA 73
+ + K L+ +
Sbjct: 510 PDQYTKFGLSPS 521
>sp|Q54PT2|VPS4_DICDI Vacuolar protein sorting-associated protein 4 OS=Dictyostelium
discoideum GN=vps4 PE=3 SV=1
Length = 444
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 23/35 (65%)
Query: 35 NVSWEHIAGLDGTIKDLKQTVIFPIKHKEMFAKSK 69
NV W+ +AGL + LK+ VIFPIK +MF ++
Sbjct: 131 NVKWDDVAGLYQAKEYLKEAVIFPIKFPQMFTGNR 165
>sp|A6VHR1|PAN_METM7 Proteasome-activating nucleotidase OS=Methanococcus maripaludis
(strain C7 / ATCC BAA-1331) GN=pan PE=3 SV=1
Length = 407
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 24/33 (72%)
Query: 35 NVSWEHIAGLDGTIKDLKQTVIFPIKHKEMFAK 67
++S+E I GL+ I+D+K+ V P+K+ E+F K
Sbjct: 144 DISFEDIGGLNNQIRDIKEVVELPLKNPELFEK 176
>sp|A8X0L9|TBP7_CAEBR Tat-binding homolog 7 OS=Caenorhabditis briggsae GN=lex-1 PE=3 SV=2
Length = 1285
Score = 37.4 bits (85), Expect = 0.025, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 41/70 (58%), Gaps = 3/70 (4%)
Query: 4 ERKLKTLK-INMDSFTDHEMSIASHLVDP--ADINVSWEHIAGLDGTIKDLKQTVIFPIK 60
E++L++ + I MD + + +DP D +V ++ + GL I+ LK+ V+FP+
Sbjct: 367 EKELQSAQHILMDRMRKTDAGQGASDIDPMSVDSSVGFDQVGGLSHHIQSLKEVVLFPML 426
Query: 61 HKEMFAKSKL 70
+ E+FAK K+
Sbjct: 427 YPEVFAKFKI 436
>sp|A9A916|PAN_METM6 Proteasome-activating nucleotidase OS=Methanococcus maripaludis
(strain C6 / ATCC BAA-1332) GN=pan PE=3 SV=1
Length = 407
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 24/33 (72%)
Query: 35 NVSWEHIAGLDGTIKDLKQTVIFPIKHKEMFAK 67
++S+E I GL+ I+D+K+ V P+K+ E+F K
Sbjct: 144 DISFEDIGGLNNQIRDIKEVVELPLKNPELFEK 176
>sp|A4G0S4|PAN_METM5 Proteasome-activating nucleotidase OS=Methanococcus maripaludis
(strain C5 / ATCC BAA-1333) GN=pan PE=3 SV=1
Length = 407
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 24/33 (72%)
Query: 35 NVSWEHIAGLDGTIKDLKQTVIFPIKHKEMFAK 67
++S+E I GL+ I+D+K+ V P+K+ E+F K
Sbjct: 144 DISFEDIGGLNNQIRDIKEVVELPLKNPELFEK 176
>sp|Q6LWR0|PAN_METMP Proteasome-activating nucleotidase OS=Methanococcus maripaludis
(strain S2 / LL) GN=pan PE=3 SV=1
Length = 407
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 24/33 (72%)
Query: 35 NVSWEHIAGLDGTIKDLKQTVIFPIKHKEMFAK 67
++S+E I GL+ I+D+K+ V P+K+ E+F K
Sbjct: 144 DISFEDIGGLNNQIRDIKEVVELPLKNPELFEK 176
>sp|P54815|MSP1_CAEEL Mitochondrial sorting homolog OS=Caenorhabditis elegans GN=mspn-1
PE=3 SV=2
Length = 342
Score = 37.4 bits (85), Expect = 0.026, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 17 FTDHEMSIASHLVDPADINVSWEHIAGLDGTIKDLKQTVIFPIKHKEMFAKSKLTKAPK 75
++HE+ IA+ V D+ W+ I G + + +LK +I P++ + S L P+
Sbjct: 61 LSEHEIRIATQFVGGEDVGADWDEIGGCEELVAELKDRIILPLRFASQ-SGSHLLSPPR 118
>sp|Q0VA52|SPA5L_XENTR Spermatogenesis-associated protein 5-like protein 1 OS=Xenopus
tropicalis GN=spata5l1 PE=2 SV=1
Length = 593
Score = 37.4 bits (85), Expect = 0.027, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 24/36 (66%)
Query: 36 VSWEHIAGLDGTIKDLKQTVIFPIKHKEMFAKSKLT 71
V WEHI GL+ L+Q++ +P+K+ E F++ LT
Sbjct: 454 VHWEHIGGLEDIKHKLRQSIEWPMKYPEAFSRMGLT 489
>sp|Q09803|VPS4_SCHPO Suppressor protein of bem1/bed5 double mutants
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=vps4 PE=3 SV=1
Length = 432
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 24/35 (68%)
Query: 35 NVSWEHIAGLDGTIKDLKQTVIFPIKHKEMFAKSK 69
NV W+ IAGL+ + LK+TV+ PIK ++F+ +
Sbjct: 125 NVRWDDIAGLENAKEALKETVLLPIKLPQLFSHGR 159
>sp|Q7ZU99|TERA_DANRE Transitional endoplasmic reticulum ATPase OS=Danio rerio GN=vcp
PE=1 SV=1
Length = 806
Score = 37.4 bits (85), Expect = 0.029, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 26/39 (66%)
Query: 35 NVSWEHIAGLDGTIKDLKQTVIFPIKHKEMFAKSKLTKA 73
N++WE I GLD ++L++ V +P++H + F K +T +
Sbjct: 473 NITWEDIGGLDDVKRELQELVQYPVEHPDKFLKFGMTPS 511
>sp|O26824|PAN_METTH Proteasome-activating nucleotidase OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=pan PE=3 SV=1
Length = 410
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 24/33 (72%)
Query: 35 NVSWEHIAGLDGTIKDLKQTVIFPIKHKEMFAK 67
+VS+E I GL+ ++++K+TV P+K E+F K
Sbjct: 147 DVSYEQIGGLEEQVREVKETVELPLKKPELFEK 179
>sp|Q5R658|VPS4B_PONAB Vacuolar protein sorting-associated protein 4B OS=Pongo abelii
GN=VPS4B PE=2 SV=1
Length = 444
Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 35 NVSWEHIAGLDGTIKDLKQTVIFPIKHKEMF 65
NV W +AGL+G + LK+ VI PIK +F
Sbjct: 130 NVKWSDVAGLEGAKEALKEAVILPIKFPHLF 160
>sp|Q0VD48|VPS4B_BOVIN Vacuolar protein sorting-associated protein 4B OS=Bos taurus
GN=VPS4B PE=2 SV=1
Length = 444
Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 35 NVSWEHIAGLDGTIKDLKQTVIFPIKHKEMF 65
NV W +AGL+G + LK+ VI PIK +F
Sbjct: 130 NVKWSDVAGLEGAKEALKEAVILPIKFPHLF 160
>sp|O75351|VPS4B_HUMAN Vacuolar protein sorting-associated protein 4B OS=Homo sapiens
GN=VPS4B PE=1 SV=2
Length = 444
Score = 37.0 bits (84), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 35 NVSWEHIAGLDGTIKDLKQTVIFPIKHKEMF 65
NV W +AGL+G + LK+ VI PIK +F
Sbjct: 130 NVKWSDVAGLEGAKEALKEAVILPIKFPHLF 160
>sp|P46467|VPS4B_MOUSE Vacuolar protein sorting-associated protein 4B OS=Mus musculus
GN=Vps4b PE=1 SV=2
Length = 444
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 35 NVSWEHIAGLDGTIKDLKQTVIFPIKHKEMF 65
NV W +AGL+G + LK+ VI PIK +F
Sbjct: 130 NVKWSDVAGLEGAKEALKEAVILPIKFPHLF 160
>sp|Q58576|PAN_METJA Proteasome-activating nucleotidase OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=pan PE=1 SV=1
Length = 430
Score = 36.6 bits (83), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 23/33 (69%)
Query: 35 NVSWEHIAGLDGTIKDLKQTVIFPIKHKEMFAK 67
NV +E I GL+ ++++++ V P+KH E+F K
Sbjct: 166 NVRYEDIGGLEKQMQEIREVVELPLKHPELFEK 198
>sp|Q8IYT4|KATL2_HUMAN Katanin p60 ATPase-containing subunit A-like 2 OS=Homo sapiens
GN=KATNAL2 PE=1 SV=3
Length = 538
Score = 36.6 bits (83), Expect = 0.053, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 3 AERKLKTLK--INMDSFTDHEMSIASHLVDPADINVSWEHIAGLDGTIKDLKQTVIFPIK 60
+ER LK L I M+S ++ S + + N+ W I GLD + +K+ V++PI+
Sbjct: 216 SERLLKPLSAFIGMNSEMRELAAVVSRDIYLHNPNIKWNDIIGLDAAKQLVKEAVVYPIR 275
Query: 61 HKEMF 65
+ ++F
Sbjct: 276 YPQLF 280
>sp|Q9UN37|VPS4A_HUMAN Vacuolar protein sorting-associated protein 4A OS=Homo sapiens
GN=VPS4A PE=1 SV=1
Length = 437
Score = 36.6 bits (83), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 35 NVSWEHIAGLDGTIKDLKQTVIFPIKHKEMF 65
N+ W +AGL+G + LK+ VI PIK +F
Sbjct: 123 NIRWNDVAGLEGAKEALKEAVILPIKFPHLF 153
>sp|Q793F9|VPS4A_RAT Vacuolar protein sorting-associated protein 4A OS=Rattus norvegicus
GN=Vps4a PE=2 SV=1
Length = 437
Score = 36.2 bits (82), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 35 NVSWEHIAGLDGTIKDLKQTVIFPIKHKEMF 65
N+ W +AGL+G + LK+ VI PIK +F
Sbjct: 123 NIRWNDVAGLEGAKEALKEAVILPIKFPHLF 153
>sp|Q8VEJ9|VPS4A_MOUSE Vacuolar protein sorting-associated protein 4A OS=Mus musculus
GN=Vps4a PE=1 SV=1
Length = 437
Score = 36.2 bits (82), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 35 NVSWEHIAGLDGTIKDLKQTVIFPIKHKEMF 65
N+ W +AGL+G + LK+ VI PIK +F
Sbjct: 123 NIRWNDVAGLEGAKEALKEAVILPIKFPHLF 153
>sp|Q96372|CDC48_CAPAN Cell division cycle protein 48 homolog OS=Capsicum annuum GN=CAFP
PE=2 SV=1
Length = 805
Score = 36.2 bits (82), Expect = 0.055, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 35 NVSWEHIAGLDGTIKDLKQTVIFPIKHKEMFAK 67
NVSWE I GL+ ++L++TV +P++ E F K
Sbjct: 477 NVSWEDIGGLENVKRELQETVQYPVEPPEKFEK 509
>sp|Q9D3R6|KATL2_MOUSE Katanin p60 ATPase-containing subunit A-like 2 OS=Mus musculus
GN=Katnal2 PE=2 SV=2
Length = 539
Score = 36.2 bits (82), Expect = 0.059, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 3 AERKLKTLK--INMDSFTDHEMSIASHLVDPADINVSWEHIAGLDGTIKDLKQTVIFPIK 60
+ER LK L I M+S ++ S + + N+ W I GLD + +K+ V++PI+
Sbjct: 217 SERLLKPLSAFIGMNSEMRELAAVVSRDIYLHNPNIKWNDIIGLDAAKQLVKEAVVYPIR 276
Query: 61 HKEMF 65
+ ++F
Sbjct: 277 YPQLF 281
>sp|P62198|PRS8_RAT 26S protease regulatory subunit 8 OS=Rattus norvegicus GN=Psmc5
PE=1 SV=1
Length = 406
Score = 36.2 bits (82), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 10/59 (16%)
Query: 15 DSFTDHEMSIASHLVDPADI--------NVSWEHIAGLDGTIKDLKQTVIFPIKHKEMF 65
DS+T H+ I + VDP + ++E I GLD IK++K+ + P+KH E+F
Sbjct: 119 DSYTLHK--ILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELF 175
>sp|P62197|PRS8_PIG 26S protease regulatory subunit 8 OS=Sus scrofa GN=PSMC5 PE=2 SV=1
Length = 406
Score = 36.2 bits (82), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 10/59 (16%)
Query: 15 DSFTDHEMSIASHLVDPADI--------NVSWEHIAGLDGTIKDLKQTVIFPIKHKEMF 65
DS+T H+ I + VDP + ++E I GLD IK++K+ + P+KH E+F
Sbjct: 119 DSYTLHK--ILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELF 175
>sp|Q25544|PRS8_NAEFO 26S protease regulatory subunit 8 homolog OS=Naegleria fowleri PE=2
SV=1
Length = 414
Score = 36.2 bits (82), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 35 NVSWEHIAGLDGTIKDLKQTVIFPIKHKEMF 65
+ ++E + GLD IK++K+ + PIKH E+F
Sbjct: 152 DATYEMVGGLDEQIKEIKEVIELPIKHPELF 182
>sp|P62196|PRS8_MOUSE 26S protease regulatory subunit 8 OS=Mus musculus GN=Psmc5 PE=1
SV=1
Length = 406
Score = 36.2 bits (82), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 10/59 (16%)
Query: 15 DSFTDHEMSIASHLVDPADI--------NVSWEHIAGLDGTIKDLKQTVIFPIKHKEMF 65
DS+T H+ I + VDP + ++E I GLD IK++K+ + P+KH E+F
Sbjct: 119 DSYTLHK--ILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELF 175
>sp|P62195|PRS8_HUMAN 26S protease regulatory subunit 8 OS=Homo sapiens GN=PSMC5 PE=1
SV=1
Length = 406
Score = 36.2 bits (82), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 10/59 (16%)
Query: 15 DSFTDHEMSIASHLVDPADI--------NVSWEHIAGLDGTIKDLKQTVIFPIKHKEMF 65
DS+T H+ I + VDP + ++E I GLD IK++K+ + P+KH E+F
Sbjct: 119 DSYTLHK--ILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELF 175
>sp|P62194|PRS8_BOVIN 26S protease regulatory subunit 8 OS=Bos taurus GN=PSMC5 PE=2 SV=1
Length = 406
Score = 36.2 bits (82), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 10/59 (16%)
Query: 15 DSFTDHEMSIASHLVDPADI--------NVSWEHIAGLDGTIKDLKQTVIFPIKHKEMF 65
DS+T H+ I + VDP + ++E I GLD IK++K+ + P+KH E+F
Sbjct: 119 DSYTLHK--ILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELF 175
>sp|P40340|TBP7_YEAST Tat-binding homolog 7 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=YTA7 PE=1 SV=2
Length = 1379
Score = 35.8 bits (81), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 29 VDP--ADINVSWEHIAGLDGTIKDLKQTVIFPIKHKEMFAKSKLT 71
+DP D+NV+++ I GLD I LK+ V P+ + E++ +T
Sbjct: 401 LDPLGVDMNVNFDDIGGLDNYIDQLKEMVALPLLYPELYQNFNIT 445
>sp|P54814|PRS8_MANSE 26S protease regulatory subunit 8 OS=Manduca sexta PE=2 SV=1
Length = 402
Score = 35.8 bits (81), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 21/29 (72%)
Query: 37 SWEHIAGLDGTIKDLKQTVIFPIKHKEMF 65
++E + GLD IK++K+ + P+KH E+F
Sbjct: 143 TYEMVGGLDKQIKEIKEVIELPVKHPELF 171
>sp|O18413|PRS8_DROME 26S protease regulatory subunit 8 OS=Drosophila melanogaster
GN=Pros45 PE=1 SV=2
Length = 405
Score = 35.8 bits (81), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 21/29 (72%)
Query: 37 SWEHIAGLDGTIKDLKQTVIFPIKHKEMF 65
++E + GLD IK++K+ + P+KH E+F
Sbjct: 146 TYEMVGGLDKQIKEIKEVIELPVKHPELF 174
>sp|Q9C5U3|PRS8A_ARATH 26S protease regulatory subunit 8 homolog A OS=Arabidopsis thaliana
GN=RPT6A PE=2 SV=1
Length = 419
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 21/29 (72%)
Query: 37 SWEHIAGLDGTIKDLKQTVIFPIKHKEMF 65
+++ I GLD IK++K+ + PIKH E+F
Sbjct: 159 TYDMIGGLDQQIKEIKEVIELPIKHPELF 187
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.130 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,972,632
Number of Sequences: 539616
Number of extensions: 826450
Number of successful extensions: 2229
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 2062
Number of HSP's gapped (non-prelim): 188
length of query: 75
length of database: 191,569,459
effective HSP length: 46
effective length of query: 29
effective length of database: 166,747,123
effective search space: 4835666567
effective search space used: 4835666567
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)