Query psy8938
Match_columns 75
No_of_seqs 121 out of 1025
Neff 7.0
Searched_HMMs 46136
Date Fri Aug 16 23:16:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8938.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8938hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0737|consensus 99.5 1.5E-14 3.4E-19 104.2 5.2 73 3-75 50-128 (386)
2 COG1222 RPT1 ATP-dependent 26S 99.4 6.1E-13 1.3E-17 96.2 4.1 44 31-75 143-186 (406)
3 KOG0730|consensus 99.3 8E-13 1.7E-17 100.6 3.7 44 31-75 426-469 (693)
4 KOG0733|consensus 99.3 9.9E-13 2.1E-17 100.2 3.0 58 14-74 480-545 (802)
5 KOG0736|consensus 99.1 3.9E-11 8.4E-16 93.2 3.8 55 13-67 639-700 (953)
6 KOG0726|consensus 99.0 1.5E-10 3.2E-15 83.1 3.5 43 32-75 178-220 (440)
7 KOG0652|consensus 98.9 8.4E-10 1.8E-14 78.5 4.1 55 19-75 152-206 (424)
8 KOG0739|consensus 98.9 1E-09 2.2E-14 78.9 3.3 47 21-68 116-162 (439)
9 PTZ00454 26S protease regulato 98.8 4.7E-09 1E-13 76.4 4.2 44 31-75 137-180 (398)
10 KOG0729|consensus 98.8 5E-09 1.1E-13 74.7 4.0 43 32-75 170-212 (435)
11 KOG0727|consensus 98.8 4.6E-09 1E-13 74.5 3.3 43 32-75 148-190 (408)
12 KOG0738|consensus 98.7 7.2E-09 1.6E-13 76.2 3.0 45 23-68 197-241 (491)
13 TIGR03689 pup_AAA proteasome A 98.6 4.1E-08 8.9E-13 73.7 4.0 49 26-75 169-217 (512)
14 KOG0728|consensus 98.6 4.4E-08 9.5E-13 69.5 3.3 44 31-75 139-182 (404)
15 KOG0732|consensus 98.5 5.4E-08 1.2E-12 77.7 3.0 41 34-75 260-300 (1080)
16 PRK03992 proteasome-activating 98.5 9.5E-08 2.1E-12 69.1 4.0 44 31-75 123-166 (389)
17 TIGR01243 CDC48 AAA family ATP 98.5 8.6E-08 1.9E-12 73.8 2.8 42 33-75 447-488 (733)
18 COG0464 SpoVK ATPases of the A 98.5 2.4E-07 5.2E-12 68.2 4.6 60 15-75 214-277 (494)
19 PTZ00361 26 proteosome regulat 98.4 2.7E-07 5.8E-12 68.2 3.9 43 32-75 176-218 (438)
20 TIGR01242 26Sp45 26S proteasom 98.3 5.6E-07 1.2E-11 64.2 4.0 44 31-75 114-157 (364)
21 KOG0735|consensus 98.1 2.4E-06 5.2E-11 66.9 3.4 57 14-70 635-698 (952)
22 TIGR01243 CDC48 AAA family ATP 98.1 3.7E-06 8E-11 64.9 3.8 42 33-75 172-213 (733)
23 KOG0733|consensus 98.1 3E-06 6.5E-11 65.4 3.3 40 34-75 185-224 (802)
24 KOG0731|consensus 98.0 5.3E-06 1.1E-10 64.9 4.0 43 31-75 303-345 (774)
25 KOG0740|consensus 98.0 3.3E-06 7.2E-11 62.4 2.8 41 29-69 143-183 (428)
26 KOG0651|consensus 98.0 4.5E-06 9.7E-11 60.3 3.2 43 32-75 125-167 (388)
27 TIGR01241 FtsH_fam ATP-depende 97.6 7E-05 1.5E-09 55.6 4.1 45 29-75 45-89 (495)
28 KOG0734|consensus 97.3 0.00016 3.5E-09 55.6 2.9 45 29-75 293-338 (752)
29 COG0465 HflB ATP-dependent Zn 96.9 0.00088 1.9E-08 51.5 2.9 43 31-75 142-184 (596)
30 KOG0730|consensus 96.5 0.0024 5.1E-08 49.8 3.0 40 34-75 180-219 (693)
31 CHL00176 ftsH cell division pr 96.5 0.0034 7.5E-08 48.5 3.8 43 31-75 175-217 (638)
32 CHL00195 ycf46 Ycf46; Provisio 94.7 0.042 9.2E-07 41.4 3.6 38 34-75 223-260 (489)
33 CHL00181 cbbX CbbX; Provisiona 94.4 0.042 9.1E-07 38.5 2.8 35 38-74 22-56 (287)
34 PRK10733 hflB ATP-dependent me 91.2 0.26 5.6E-06 38.2 3.4 44 29-74 142-185 (644)
35 TIGR02880 cbbX_cfxQ probable R 91.0 0.22 4.8E-06 34.7 2.6 33 39-73 22-54 (284)
36 COG1223 Predicted ATPase (AAA+ 90.2 0.28 6E-06 35.5 2.6 33 34-67 116-148 (368)
37 TIGR02881 spore_V_K stage V sp 81.3 1.5 3.3E-05 29.8 2.5 24 38-61 5-28 (261)
38 PRK07940 DNA polymerase III su 68.9 3.5 7.5E-05 30.3 1.8 25 37-61 3-27 (394)
39 cd03029 GRX_hybridPRX5 Glutare 61.9 18 0.0004 19.4 3.5 50 2-51 16-71 (72)
40 PF06820 Phage_fiber_C: Putati 57.8 3.3 7E-05 23.1 -0.1 11 35-45 54-64 (64)
41 TIGR02189 GlrX-like_plant Glut 46.8 41 0.00088 19.7 3.5 50 2-51 23-82 (99)
42 PRK10824 glutaredoxin-4; Provi 45.5 40 0.00087 20.7 3.4 51 2-52 35-92 (115)
43 KOG1766|consensus 40.9 35 0.00075 20.9 2.5 28 29-57 43-70 (104)
44 KOG4009|consensus 40.5 15 0.00033 23.9 1.0 19 35-53 116-134 (156)
45 TIGR00635 ruvB Holliday juncti 40.4 11 0.00025 25.7 0.4 21 37-57 2-22 (305)
46 TIGR00365 monothiol glutaredox 38.0 62 0.0013 18.8 3.3 50 2-51 32-88 (97)
47 PHA01351 putative minor struct 36.7 36 0.00079 27.9 2.7 60 2-74 253-313 (1070)
48 TIGR02190 GlrX-dom Glutaredoxi 35.1 79 0.0017 17.3 3.4 49 2-50 23-77 (79)
49 PRK14585 pgaD putative PGA bio 32.0 22 0.00047 22.9 0.7 20 30-49 111-130 (137)
50 KOG1752|consensus 30.5 98 0.0021 18.7 3.4 48 2-49 29-86 (104)
51 TIGR02180 GRX_euk Glutaredoxin 29.7 96 0.0021 16.5 3.6 52 2-53 14-77 (84)
52 TIGR02397 dnaX_nterm DNA polym 29.0 51 0.0011 22.9 2.2 22 36-57 11-32 (355)
53 PF15061 DUF4538: Domain of un 28.1 40 0.00086 18.6 1.2 19 49-67 20-38 (58)
54 PF11291 DUF3091: Protein of u 26.5 70 0.0015 19.5 2.2 25 31-55 46-71 (100)
55 PRK06305 DNA polymerase III su 26.4 55 0.0012 24.4 2.1 22 36-57 14-35 (451)
56 PRK11235 bifunctional antitoxi 26.1 96 0.0021 18.0 2.7 51 2-52 15-67 (80)
57 PRK14963 DNA polymerase III su 25.5 57 0.0012 24.8 2.1 22 36-57 11-32 (504)
58 KOG2154|consensus 25.3 49 0.0011 25.5 1.7 38 35-72 282-323 (505)
59 cd03031 GRX_GRX_like Glutaredo 25.3 1.1E+02 0.0024 19.5 3.1 49 2-50 21-80 (147)
60 PF08195 TRI9: TRI9 protein; 25.2 46 0.001 16.9 1.1 25 31-55 12-36 (43)
61 PRK14965 DNA polymerase III su 25.0 60 0.0013 25.0 2.1 21 37-57 14-34 (576)
62 PF10945 DUF2629: Protein of u 24.0 71 0.0015 16.6 1.7 25 32-59 14-38 (44)
63 PRK14961 DNA polymerase III su 23.5 71 0.0015 22.9 2.2 22 36-57 13-34 (363)
64 PRK05564 DNA polymerase III su 23.4 71 0.0015 22.2 2.1 21 37-57 2-22 (313)
65 cd03027 GRX_DEP Glutaredoxin ( 22.8 1.4E+02 0.0029 15.9 3.0 48 2-49 16-70 (73)
66 PF07476 MAAL_C: Methylasparta 21.5 44 0.00094 23.5 0.7 33 15-52 151-183 (248)
67 PF05496 RuvB_N: Holliday junc 21.1 36 0.00077 23.7 0.2 25 29-57 18-42 (233)
No 1
>KOG0737|consensus
Probab=99.52 E-value=1.5e-14 Score=104.24 Aligned_cols=73 Identities=38% Similarity=0.629 Sum_probs=65.6
Q ss_pred HHHHHHhhcC------cccccchHHHHHhccccCCCCCCcchhhccCcHHHHHHHHHHhhccccCHHHHhcCCCCCCCC
Q psy8938 3 AERKLKTLKI------NMDSFTDHEMSIASHLVDPADINVSWEHIAGLDGTIKDLKQTVIFPIKHKEMFAKSKLTKAPK 75 (75)
Q Consensus 3 ~~~~~~~l~~------~~~~~~~~e~~ia~~~v~p~~~~v~w~dIgGl~~~k~~L~e~v~~Pl~~p~~f~~~gl~~ppk 75 (75)
+.+.+++++- ..+.+++||..+++.+|.|...+|+|+||||++.++++|+|.|.+|+++|++|.+.+|.+|||
T Consensus 50 ~~~~l~~~~~~~s~k~~~i~~ne~E~~i~s~~v~p~~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~k 128 (386)
T KOG0737|consen 50 TEELLKNLEAELSLKYRIIQKNEYEKRIASDVVPPSEIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPK 128 (386)
T ss_pred HHHHHHhhhhccchhhhhhhhhHHHHHhhhcccchhhceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCc
Confidence 3455566654 378999999999999999999999999999999999999999999999999999988888886
No 2
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=6.1e-13 Score=96.17 Aligned_cols=44 Identities=32% Similarity=0.654 Sum_probs=41.6
Q ss_pred CCCCCcchhhccCcHHHHHHHHHHhhccccCHHHHhcCCCCCCCC
Q psy8938 31 PADINVSWEHIAGLDGTIKDLKQTVIFPIKHKEMFAKSKLTKAPK 75 (75)
Q Consensus 31 p~~~~v~w~dIgGl~~~k~~L~e~v~~Pl~~p~~f~~~gl~~ppk 75 (75)
.+.|+|+|+|||||++++++|+|.|++||+||++|..+| +.|||
T Consensus 143 ~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~G-I~PPK 186 (406)
T COG1222 143 EEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELG-IDPPK 186 (406)
T ss_pred ccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcC-CCCCC
Confidence 345799999999999999999999999999999999999 79997
No 3
>KOG0730|consensus
Probab=99.33 E-value=8e-13 Score=100.62 Aligned_cols=44 Identities=41% Similarity=0.693 Sum_probs=41.1
Q ss_pred CCCCCcchhhccCcHHHHHHHHHHhhccccCHHHHhcCCCCCCCC
Q psy8938 31 PADINVSWEHIAGLDGTIKDLKQTVIFPIKHKEMFAKSKLTKAPK 75 (75)
Q Consensus 31 p~~~~v~w~dIgGl~~~k~~L~e~v~~Pl~~p~~f~~~gl~~ppk 75 (75)
-+.|+|+|+||||++++|.+|+++|.||++||+.|.++| ++|||
T Consensus 426 ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~G-i~ppk 469 (693)
T KOG0730|consen 426 VEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFG-ISPPK 469 (693)
T ss_pred ccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhc-CCCCc
Confidence 344799999999999999999999999999999999999 69997
No 4
>KOG0733|consensus
Probab=99.31 E-value=9.9e-13 Score=100.19 Aligned_cols=58 Identities=26% Similarity=0.549 Sum_probs=50.3
Q ss_pred ccccchHHHHHhccccCCCC--------CCcchhhccCcHHHHHHHHHHhhccccCHHHHhcCCCCCCC
Q psy8938 14 MDSFTDHEMSIASHLVDPAD--------INVSWEHIAGLDGTIKDLKQTVIFPIKHKEMFAKSKLTKAP 74 (75)
Q Consensus 14 ~~~~~~~e~~ia~~~v~p~~--------~~v~w~dIgGl~~~k~~L~e~v~~Pl~~p~~f~~~gl~~pp 74 (75)
.+.++|||.++. .|.|+. |+|+|+|||||++++.+|..+|.+|++||+.|+++| +.+|
T Consensus 480 ~i~~eDF~~Al~--~iQPSakREGF~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lG-i~~P 545 (802)
T KOG0733|consen 480 SIKFEDFEEALS--KIQPSAKREGFATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALG-IDAP 545 (802)
T ss_pred eecHHHHHHHHH--hcCcchhcccceecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhC-CCCC
Confidence 467778888665 466664 799999999999999999999999999999999999 5776
No 5
>KOG0736|consensus
Probab=99.13 E-value=3.9e-11 Score=93.20 Aligned_cols=55 Identities=25% Similarity=0.535 Sum_probs=46.1
Q ss_pred cccccchHHHHH-------hccccCCCCCCcchhhccCcHHHHHHHHHHhhccccCHHHHhc
Q psy8938 13 NMDSFTDHEMSI-------ASHLVDPADINVSWEHIAGLDGTIKDLKQTVIFPIKHKEMFAK 67 (75)
Q Consensus 13 ~~~~~~~~e~~i-------a~~~v~p~~~~v~w~dIgGl~~~k~~L~e~v~~Pl~~p~~f~~ 67 (75)
..++.++|.+++ +..+-.|+.|+|+|+||||++++|.++.++|.+||+||++|..
T Consensus 639 ~~l~~edf~kals~~~~~fs~aiGAPKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfss 700 (953)
T KOG0736|consen 639 FLLTEEDFDKALSRLQKEFSDAIGAPKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSS 700 (953)
T ss_pred ceecHHHHHHHHHHHHHhhhhhcCCCCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhc
Confidence 345555665554 4556679999999999999999999999999999999999975
No 6
>KOG0726|consensus
Probab=99.05 E-value=1.5e-10 Score=83.08 Aligned_cols=43 Identities=28% Similarity=0.594 Sum_probs=40.3
Q ss_pred CCCCcchhhccCcHHHHHHHHHHhhccccCHHHHhcCCCCCCCC
Q psy8938 32 ADINVSWEHIAGLDGTIKDLKQTVIFPIKHKEMFAKSKLTKAPK 75 (75)
Q Consensus 32 ~~~~v~w~dIgGl~~~k~~L~e~v~~Pl~~p~~f~~~gl~~ppk 75 (75)
++|.-+|.||||+++++++|+|+|.+||.||++|..+| ++|||
T Consensus 178 KaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemG-ikpPK 220 (440)
T KOG0726|consen 178 KAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMG-IKPPK 220 (440)
T ss_pred cCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcC-CCCCC
Confidence 45677899999999999999999999999999999999 79997
No 7
>KOG0652|consensus
Probab=98.94 E-value=8.4e-10 Score=78.47 Aligned_cols=55 Identities=25% Similarity=0.513 Sum_probs=47.7
Q ss_pred hHHHHHhccccCCCCCCcchhhccCcHHHHHHHHHHhhccccCHHHHhcCCCCCCCC
Q psy8938 19 DHEMSIASHLVDPADINVSWEHIAGLDGTIKDLKQTVIFPIKHKEMFAKSKLTKAPK 75 (75)
Q Consensus 19 ~~e~~ia~~~v~p~~~~v~w~dIgGl~~~k~~L~e~v~~Pl~~p~~f~~~gl~~ppk 75 (75)
+|+..+....| .+.|+-+|+||||++.++++|-|+|++|+.|++.|..+| ++|||
T Consensus 152 eyDsrVkaMev-DekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lg-i~pPK 206 (424)
T KOG0652|consen 152 EYDSRVKAMEV-DEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLG-IRPPK 206 (424)
T ss_pred hhhhhcceeee-ccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcC-CCCCC
Confidence 55666655545 466788999999999999999999999999999999999 79997
No 8
>KOG0739|consensus
Probab=98.90 E-value=1e-09 Score=78.90 Aligned_cols=47 Identities=34% Similarity=0.654 Sum_probs=40.3
Q ss_pred HHHHhccccCCCCCCcchhhccCcHHHHHHHHHHhhccccCHHHHhcC
Q psy8938 21 EMSIASHLVDPADINVSWEHIAGLDGTIKDLKQTVIFPIKHKEMFAKS 68 (75)
Q Consensus 21 e~~ia~~~v~p~~~~v~w~dIgGl~~~k~~L~e~v~~Pl~~p~~f~~~ 68 (75)
..++.+. |..+.|+|.|+||.||+..|++|+|+|++|+++|++|.+-
T Consensus 116 r~~L~sA-Iv~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGk 162 (439)
T KOG0739|consen 116 RSALNSA-IVREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGK 162 (439)
T ss_pred HHHhhhh-hhccCCCCchhhhccchhHHHHHHhheeecccchhhhcCC
Confidence 3345555 4467899999999999999999999999999999999874
No 9
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=98.81 E-value=4.7e-09 Score=76.43 Aligned_cols=44 Identities=20% Similarity=0.510 Sum_probs=40.9
Q ss_pred CCCCCcchhhccCcHHHHHHHHHHhhccccCHHHHhcCCCCCCCC
Q psy8938 31 PADINVSWEHIAGLDGTIKDLKQTVIFPIKHKEMFAKSKLTKAPK 75 (75)
Q Consensus 31 p~~~~v~w~dIgGl~~~k~~L~e~v~~Pl~~p~~f~~~gl~~ppk 75 (75)
.+.|+++|+||||++.+++.|++.|.+|+.+|+.|.++| +.||+
T Consensus 137 ~~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~G-l~~pk 180 (398)
T PTZ00454 137 SEKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIG-IDPPR 180 (398)
T ss_pred cCCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcC-CCCCc
Confidence 467899999999999999999999999999999999999 58875
No 10
>KOG0729|consensus
Probab=98.80 E-value=5e-09 Score=74.75 Aligned_cols=43 Identities=26% Similarity=0.514 Sum_probs=40.8
Q ss_pred CCCCcchhhccCcHHHHHHHHHHhhccccCHHHHhcCCCCCCCC
Q psy8938 32 ADINVSWEHIAGLDGTIKDLKQTVIFPIKHKEMFAKSKLTKAPK 75 (75)
Q Consensus 32 ~~~~v~w~dIgGl~~~k~~L~e~v~~Pl~~p~~f~~~gl~~ppk 75 (75)
+.|+|+|+||||..+.++.|+|.|.+|+.||+.|-.+| +.|||
T Consensus 170 ekpdvty~dvggckeqieklrevve~pll~perfv~lg-idppk 212 (435)
T KOG0729|consen 170 EKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLG-IDPPK 212 (435)
T ss_pred cCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcC-CCCCC
Confidence 45799999999999999999999999999999999999 69997
No 11
>KOG0727|consensus
Probab=98.78 E-value=4.6e-09 Score=74.46 Aligned_cols=43 Identities=23% Similarity=0.580 Sum_probs=40.7
Q ss_pred CCCCcchhhccCcHHHHHHHHHHhhccccCHHHHhcCCCCCCCC
Q psy8938 32 ADINVSWEHIAGLDGTIKDLKQTVIFPIKHKEMFAKSKLTKAPK 75 (75)
Q Consensus 32 ~~~~v~w~dIgGl~~~k~~L~e~v~~Pl~~p~~f~~~gl~~ppk 75 (75)
+.|+|+|.||||+|-+|++++|+|.+|+.|.++|+..| +.||+
T Consensus 148 ekpdvsy~diggld~qkqeireavelplt~~~ly~qig-idppr 190 (408)
T KOG0727|consen 148 EKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIG-IDPPR 190 (408)
T ss_pred CCCCccccccccchhhHHHHHHHHhccchHHHHHHHhC-CCCCc
Confidence 35799999999999999999999999999999999999 69996
No 12
>KOG0738|consensus
Probab=98.73 E-value=7.2e-09 Score=76.22 Aligned_cols=45 Identities=31% Similarity=0.547 Sum_probs=39.0
Q ss_pred HHhccccCCCCCCcchhhccCcHHHHHHHHHHhhccccCHHHHhcC
Q psy8938 23 SIASHLVDPADINVSWEHIAGLDGTIKDLKQTVIFPIKHKEMFAKS 68 (75)
Q Consensus 23 ~ia~~~v~p~~~~v~w~dIgGl~~~k~~L~e~v~~Pl~~p~~f~~~ 68 (75)
++... |...+|+|.|+||.|++++|+.|+|+|++|+++|++|.++
T Consensus 197 ~lerd-Il~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~Gi 241 (491)
T KOG0738|consen 197 ALERD-ILQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGI 241 (491)
T ss_pred HHHHH-HhccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhc
Confidence 34443 4467789999999999999999999999999999999975
No 13
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=98.61 E-value=4.1e-08 Score=73.67 Aligned_cols=49 Identities=31% Similarity=0.553 Sum_probs=43.5
Q ss_pred ccccCCCCCCcchhhccCcHHHHHHHHHHhhccccCHHHHhcCCCCCCCC
Q psy8938 26 SHLVDPADINVSWEHIAGLDGTIKDLKQTVIFPIKHKEMFAKSKLTKAPK 75 (75)
Q Consensus 26 ~~~v~p~~~~v~w~dIgGl~~~k~~L~e~v~~Pl~~p~~f~~~gl~~ppk 75 (75)
...+..+.|+++|+||||++.+++.+++.|.+|+.||++|+.+| +.||+
T Consensus 169 ~~l~~~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~g-l~~p~ 217 (512)
T TIGR03689 169 EDLVLEEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYD-LKPPK 217 (512)
T ss_pred hcceeecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhcc-CCCCc
Confidence 33455677899999999999999999999999999999999999 58775
No 14
>KOG0728|consensus
Probab=98.58 E-value=4.4e-08 Score=69.49 Aligned_cols=44 Identities=34% Similarity=0.633 Sum_probs=39.1
Q ss_pred CCCCCcchhhccCcHHHHHHHHHHhhccccCHHHHhcCCCCCCCC
Q psy8938 31 PADINVSWEHIAGLDGTIKDLKQTVIFPIKHKEMFAKSKLTKAPK 75 (75)
Q Consensus 31 p~~~~v~w~dIgGl~~~k~~L~e~v~~Pl~~p~~f~~~gl~~ppk 75 (75)
.+.|+-+|+-|||++.++++++|.|.+|.+||++|..+|+ ..||
T Consensus 139 eKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGI-aQPK 182 (404)
T KOG0728|consen 139 EKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGI-AQPK 182 (404)
T ss_pred hhCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCC-CCCc
Confidence 3457889999999999999999999999999999999995 5443
No 15
>KOG0732|consensus
Probab=98.53 E-value=5.4e-08 Score=77.71 Aligned_cols=41 Identities=27% Similarity=0.593 Sum_probs=39.2
Q ss_pred CCcchhhccCcHHHHHHHHHHhhccccCHHHHhcCCCCCCCC
Q psy8938 34 INVSWEHIAGLDGTIKDLKQTVIFPIKHKEMFAKSKLTKAPK 75 (75)
Q Consensus 34 ~~v~w~dIgGl~~~k~~L~e~v~~Pl~~p~~f~~~gl~~ppk 75 (75)
..|+|+|||||+.++..|+|+|.+|+.||+.|..++ +.||+
T Consensus 260 ~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~-itpPr 300 (1080)
T KOG0732|consen 260 SSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFN-ITPPR 300 (1080)
T ss_pred cccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcc-cCCCc
Confidence 489999999999999999999999999999999999 69996
No 16
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.53 E-value=9.5e-08 Score=69.07 Aligned_cols=44 Identities=32% Similarity=0.650 Sum_probs=40.4
Q ss_pred CCCCCcchhhccCcHHHHHHHHHHhhccccCHHHHhcCCCCCCCC
Q psy8938 31 PADINVSWEHIAGLDGTIKDLKQTVIFPIKHKEMFAKSKLTKAPK 75 (75)
Q Consensus 31 p~~~~v~w~dIgGl~~~k~~L~e~v~~Pl~~p~~f~~~gl~~ppk 75 (75)
.+.|+++|+||||++++++.|++.+.+|+.+|+.|..+| +.||+
T Consensus 123 ~~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g-~~~p~ 166 (389)
T PRK03992 123 IESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVG-IEPPK 166 (389)
T ss_pred cCCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcC-CCCCC
Confidence 455799999999999999999999999999999999999 58875
No 17
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=98.48 E-value=8.6e-08 Score=73.78 Aligned_cols=42 Identities=38% Similarity=0.752 Sum_probs=38.8
Q ss_pred CCCcchhhccCcHHHHHHHHHHhhccccCHHHHhcCCCCCCCC
Q psy8938 33 DINVSWEHIAGLDGTIKDLKQTVIFPIKHKEMFAKSKLTKAPK 75 (75)
Q Consensus 33 ~~~v~w~dIgGl~~~k~~L~e~v~~Pl~~p~~f~~~gl~~ppk 75 (75)
.++++|+||||++++|+.|++.+.||+.||+.|.++| +.+|+
T Consensus 447 ~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g-~~~~~ 488 (733)
T TIGR01243 447 VPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMG-IRPPK 488 (733)
T ss_pred ccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcC-CCCCc
Confidence 4689999999999999999999999999999999999 57774
No 18
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=2.4e-07 Score=68.19 Aligned_cols=60 Identities=28% Similarity=0.397 Sum_probs=48.7
Q ss_pred cccchHHHHHhcc----ccCCCCCCcchhhccCcHHHHHHHHHHhhccccCHHHHhcCCCCCCCC
Q psy8938 15 DSFTDHEMSIASH----LVDPADINVSWEHIAGLDGTIKDLKQTVIFPIKHKEMFAKSKLTKAPK 75 (75)
Q Consensus 15 ~~~~~~e~~ia~~----~v~p~~~~v~w~dIgGl~~~k~~L~e~v~~Pl~~p~~f~~~gl~~ppk 75 (75)
...++++.++..- .+....++++|+||||++.+++.+++.+.+|+.||+.|.+.| +++|+
T Consensus 214 ~~~~~~~~~l~~~~~~~~~~~~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~-~~~~~ 277 (494)
T COG0464 214 VTEDDFEEALKKVLPSRGVLFEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLG-LRPPK 277 (494)
T ss_pred ccHHHHHHHHHhcCcccccccCCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcC-CCCCC
Confidence 4555666665542 344567899999999999999999999999999999999988 47764
No 19
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=98.41 E-value=2.7e-07 Score=68.15 Aligned_cols=43 Identities=30% Similarity=0.566 Sum_probs=39.7
Q ss_pred CCCCcchhhccCcHHHHHHHHHHhhccccCHHHHhcCCCCCCCC
Q psy8938 32 ADINVSWEHIAGLDGTIKDLKQTVIFPIKHKEMFAKSKLTKAPK 75 (75)
Q Consensus 32 ~~~~v~w~dIgGl~~~k~~L~e~v~~Pl~~p~~f~~~gl~~ppk 75 (75)
+.|.++|+||||++++++.|++.+.+|+.+|+.|..+| +.||+
T Consensus 176 ~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~g-i~~p~ 218 (438)
T PTZ00361 176 KAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIG-IKPPK 218 (438)
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcC-CCCCc
Confidence 55789999999999999999999999999999999999 57774
No 20
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.34 E-value=5.6e-07 Score=64.17 Aligned_cols=44 Identities=36% Similarity=0.714 Sum_probs=40.3
Q ss_pred CCCCCcchhhccCcHHHHHHHHHHhhccccCHHHHhcCCCCCCCC
Q psy8938 31 PADINVSWEHIAGLDGTIKDLKQTVIFPIKHKEMFAKSKLTKAPK 75 (75)
Q Consensus 31 p~~~~v~w~dIgGl~~~k~~L~e~v~~Pl~~p~~f~~~gl~~ppk 75 (75)
.+.|+++|+||||++++++.|++.+.+|+.+|+.|..+| +.||+
T Consensus 114 ~~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g-~~~p~ 157 (364)
T TIGR01242 114 EERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVG-IEPPK 157 (364)
T ss_pred ccCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcC-CCCCc
Confidence 356799999999999999999999999999999999999 57775
No 21
>KOG0735|consensus
Probab=98.11 E-value=2.4e-06 Score=66.88 Aligned_cols=57 Identities=25% Similarity=0.364 Sum_probs=43.6
Q ss_pred ccccchHHHHHhcc------ccCCCC-CCcchhhccCcHHHHHHHHHHhhccccCHHHHhcCCC
Q psy8938 14 MDSFTDHEMSIASH------LVDPAD-INVSWEHIAGLDGTIKDLKQTVIFPIKHKEMFAKSKL 70 (75)
Q Consensus 14 ~~~~~~~e~~ia~~------~v~p~~-~~v~w~dIgGl~~~k~~L~e~v~~Pl~~p~~f~~~gl 70 (75)
.++-.+|+.++... -|.-.. .+++|+||||+.++|+.|+|.|.||.+||.+|...+|
T Consensus 635 lltke~f~ksL~~F~P~aLR~ik~~k~tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~pl 698 (952)
T KOG0735|consen 635 LLTKELFEKSLKDFVPLALRGIKLVKSTGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPL 698 (952)
T ss_pred cchHHHHHHHHHhcChHHhhhccccccCCCCceecccHHHHHHHHHHHHhccccchHHHhhCCc
Confidence 55666677765332 122122 2599999999999999999999999999999999874
No 22
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=98.07 E-value=3.7e-06 Score=64.90 Aligned_cols=42 Identities=31% Similarity=0.586 Sum_probs=38.8
Q ss_pred CCCcchhhccCcHHHHHHHHHHhhccccCHHHHhcCCCCCCCC
Q psy8938 33 DINVSWEHIAGLDGTIKDLKQTVIFPIKHKEMFAKSKLTKAPK 75 (75)
Q Consensus 33 ~~~v~w~dIgGl~~~k~~L~e~v~~Pl~~p~~f~~~gl~~ppk 75 (75)
.++++|+||||++.+++.+++.+.+|+.||++|.++| +.+|+
T Consensus 172 ~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~g-i~~~~ 213 (733)
T TIGR01243 172 VPKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLG-IEPPK 213 (733)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcC-CCCCc
Confidence 4689999999999999999999999999999999999 57774
No 23
>KOG0733|consensus
Probab=98.07 E-value=3e-06 Score=65.44 Aligned_cols=40 Identities=40% Similarity=0.690 Sum_probs=37.9
Q ss_pred CCcchhhccCcHHHHHHHHHHhhccccCHHHHhcCCCCCCCC
Q psy8938 34 INVSWEHIAGLDGTIKDLKQTVIFPIKHKEMFAKSKLTKAPK 75 (75)
Q Consensus 34 ~~v~w~dIgGl~~~k~~L~e~v~~Pl~~p~~f~~~gl~~ppk 75 (75)
.+|+|+||||++.+..+|++.+.. ++||+.|..+| +.|||
T Consensus 185 snv~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lG-v~Ppr 224 (802)
T KOG0733|consen 185 SNVSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLG-VRPPR 224 (802)
T ss_pred CCcchhhccChHHHHHHHHHHHHH-hcCchhHhhcC-CCCCC
Confidence 389999999999999999999999 99999999999 69996
No 24
>KOG0731|consensus
Probab=98.04 E-value=5.3e-06 Score=64.90 Aligned_cols=43 Identities=28% Similarity=0.522 Sum_probs=39.4
Q ss_pred CCCCCcchhhccCcHHHHHHHHHHhhccccCHHHHhcCCCCCCCC
Q psy8938 31 PADINVSWEHIAGLDGTIKDLKQTVIFPIKHKEMFAKSKLTKAPK 75 (75)
Q Consensus 31 p~~~~v~w~dIgGl~~~k~~L~e~v~~Pl~~p~~f~~~gl~~ppk 75 (75)
....+|+|.||.|++++|++|+|.|.+ |++|+.|.++| +++||
T Consensus 303 ~~~t~V~FkDVAG~deAK~El~E~V~f-LKNP~~Y~~lG-AKiPk 345 (774)
T KOG0731|consen 303 EGNTGVKFKDVAGVDEAKEELMEFVKF-LKNPEQYQELG-AKIPK 345 (774)
T ss_pred CCCCCCccccccCcHHHHHHHHHHHHH-hcCHHHHHHcC-CcCcC
Confidence 344579999999999999999999999 99999999999 69987
No 25
>KOG0740|consensus
Probab=98.04 E-value=3.3e-06 Score=62.39 Aligned_cols=41 Identities=32% Similarity=0.650 Sum_probs=36.9
Q ss_pred cCCCCCCcchhhccCcHHHHHHHHHHhhccccCHHHHhcCC
Q psy8938 29 VDPADINVSWEHIAGLDGTIKDLKQTVIFPIKHKEMFAKSK 69 (75)
Q Consensus 29 v~p~~~~v~w~dIgGl~~~k~~L~e~v~~Pl~~p~~f~~~g 69 (75)
|....++|.|+||+|++++++.+.|.++||+.+|++|.++.
T Consensus 143 I~~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr 183 (428)
T KOG0740|consen 143 IGDTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLR 183 (428)
T ss_pred HhccCCcccccCCcchhhHHHHhhhhhhhcccchHhhhccc
Confidence 44556789999999999999999999999999999999764
No 26
>KOG0651|consensus
Probab=98.02 E-value=4.5e-06 Score=60.34 Aligned_cols=43 Identities=30% Similarity=0.602 Sum_probs=40.1
Q ss_pred CCCCcchhhccCcHHHHHHHHHHhhccccCHHHHhcCCCCCCCC
Q psy8938 32 ADINVSWEHIAGLDGTIKDLKQTVIFPIKHKEMFAKSKLTKAPK 75 (75)
Q Consensus 32 ~~~~v~w~dIgGl~~~k~~L~e~v~~Pl~~p~~f~~~gl~~ppk 75 (75)
...+++|+.|||+-.++.+++|.|.+|+.+|++|.+.| ++|||
T Consensus 125 ~~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvg-Ik~Pk 167 (388)
T KOG0651|consen 125 DPRNISFENVGGLFYQIRELREVIELPLTNPELFLRVG-IKPPK 167 (388)
T ss_pred CccccCHHHhCChHHHHHHHHhheEeeccCchhccccC-CCCCc
Confidence 34489999999999999999999999999999999999 79996
No 27
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.64 E-value=7e-05 Score=55.56 Aligned_cols=45 Identities=29% Similarity=0.524 Sum_probs=39.3
Q ss_pred cCCCCCCcchhhccCcHHHHHHHHHHhhccccCHHHHhcCCCCCCCC
Q psy8938 29 VDPADINVSWEHIAGLDGTIKDLKQTVIFPIKHKEMFAKSKLTKAPK 75 (75)
Q Consensus 29 v~p~~~~v~w~dIgGl~~~k~~L~e~v~~Pl~~p~~f~~~gl~~ppk 75 (75)
..++.++++|+||+|++++++.+++.+.+ +++|+.|...| ..+|+
T Consensus 45 ~~~~~~~~~~~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g-~~~~~ 89 (495)
T TIGR01241 45 LNEEKPKVTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLG-AKIPK 89 (495)
T ss_pred ccCCCCCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHhcC-CCCCC
Confidence 34557899999999999999999999888 99999999988 47664
No 28
>KOG0734|consensus
Probab=97.34 E-value=0.00016 Score=55.60 Aligned_cols=45 Identities=36% Similarity=0.634 Sum_probs=38.5
Q ss_pred cCCCC-CCcchhhccCcHHHHHHHHHHhhccccCHHHHhcCCCCCCCC
Q psy8938 29 VDPAD-INVSWEHIAGLDGTIKDLKQTVIFPIKHKEMFAKSKLTKAPK 75 (75)
Q Consensus 29 v~p~~-~~v~w~dIgGl~~~k~~L~e~v~~Pl~~p~~f~~~gl~~ppk 75 (75)
+.|+. .+|+|+||-|+|+.|++|+|.|.| |+.|+.|.++| =+-||
T Consensus 293 v~p~~~~nv~F~dVkG~DEAK~ELeEiVef-LkdP~kftrLG-GKLPK 338 (752)
T KOG0734|consen 293 VDPEQMKNVTFEDVKGVDEAKQELEEIVEF-LKDPTKFTRLG-GKLPK 338 (752)
T ss_pred cChhhhcccccccccChHHHHHHHHHHHHH-hcCcHHhhhcc-CcCCC
Confidence 45553 499999999999999999999999 99999999988 34444
No 29
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.87 E-value=0.00088 Score=51.52 Aligned_cols=43 Identities=26% Similarity=0.510 Sum_probs=38.5
Q ss_pred CCCCCcchhhccCcHHHHHHHHHHhhccccCHHHHhcCCCCCCCC
Q psy8938 31 PADINVSWEHIAGLDGTIKDLKQTVIFPIKHKEMFAKSKLTKAPK 75 (75)
Q Consensus 31 p~~~~v~w~dIgGl~~~k~~L~e~v~~Pl~~p~~f~~~gl~~ppk 75 (75)
+...+|+|.||.|.|++|++|.|.|.+ ++.|..|.++| .+-||
T Consensus 142 ~~~~~v~F~DVAG~dEakeel~EiVdf-Lk~p~ky~~lG-akiPk 184 (596)
T COG0465 142 EDQVKVTFADVAGVDEAKEELSELVDF-LKNPKKYQALG-AKIPK 184 (596)
T ss_pred ccccCcChhhhcCcHHHHHHHHHHHHH-HhCchhhHhcc-ccccc
Confidence 345789999999999999999999998 99999999999 47775
No 30
>KOG0730|consensus
Probab=96.50 E-value=0.0024 Score=49.76 Aligned_cols=40 Identities=25% Similarity=0.556 Sum_probs=36.7
Q ss_pred CCcchhhccCcHHHHHHHHHHhhccccCHHHHhcCCCCCCCC
Q psy8938 34 INVSWEHIAGLDGTIKDLKQTVIFPIKHKEMFAKSKLTKAPK 75 (75)
Q Consensus 34 ~~v~w~dIgGl~~~k~~L~e~v~~Pl~~p~~f~~~gl~~ppk 75 (75)
+.++ +++||+....+.++++|.+|+.||..|..+| ++||+
T Consensus 180 ~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g-~~~pr 219 (693)
T KOG0730|consen 180 PEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIG-IKPPR 219 (693)
T ss_pred cccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcC-CCCCC
Confidence 4566 7999999999999999999999999999999 68885
No 31
>CHL00176 ftsH cell division protein; Validated
Probab=96.48 E-value=0.0034 Score=48.51 Aligned_cols=43 Identities=30% Similarity=0.588 Sum_probs=37.1
Q ss_pred CCCCCcchhhccCcHHHHHHHHHHhhccccCHHHHhcCCCCCCCC
Q psy8938 31 PADINVSWEHIAGLDGTIKDLKQTVIFPIKHKEMFAKSKLTKAPK 75 (75)
Q Consensus 31 p~~~~v~w~dIgGl~~~k~~L~e~v~~Pl~~p~~f~~~gl~~ppk 75 (75)
.....++|+||+|++++++.+++.+.+ +++|+.|..+| ..+|+
T Consensus 175 ~~~~~~~f~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g-~~~p~ 217 (638)
T CHL00176 175 EADTGITFRDIAGIEEAKEEFEEVVSF-LKKPERFTAVG-AKIPK 217 (638)
T ss_pred ccCCCCCHHhccChHHHHHHHHHHHHH-HhCHHHHhhcc-CCCCc
Confidence 445589999999999999999998877 99999999988 46664
No 32
>CHL00195 ycf46 Ycf46; Provisional
Probab=94.68 E-value=0.042 Score=41.39 Aligned_cols=38 Identities=21% Similarity=0.254 Sum_probs=28.9
Q ss_pred CCcchhhccCcHHHHHHHHHHhhccccCHHHHhcCCCCCCCC
Q psy8938 34 INVSWEHIAGLDGTIKDLKQTVIFPIKHKEMFAKSKLTKAPK 75 (75)
Q Consensus 34 ~~v~w~dIgGl~~~k~~L~e~v~~Pl~~p~~f~~~gl~~ppk 75 (75)
++++|+||||++.+|+.|++... .++..+..+| +.+||
T Consensus 223 ~~~~~~dvgGl~~lK~~l~~~~~---~~~~~~~~~g-l~~pk 260 (489)
T CHL00195 223 VNEKISDIGGLDNLKDWLKKRST---SFSKQASNYG-LPTPR 260 (489)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHH---HhhHHHHhcC-CCCCc
Confidence 57899999999999999987532 3455667788 47665
No 33
>CHL00181 cbbX CbbX; Provisional
Probab=94.37 E-value=0.042 Score=38.51 Aligned_cols=35 Identities=11% Similarity=0.172 Sum_probs=29.2
Q ss_pred hhhccCcHHHHHHHHHHhhccccCHHHHhcCCCCCCC
Q psy8938 38 WEHIAGLDGTIKDLKQTVIFPIKHKEMFAKSKLTKAP 74 (75)
Q Consensus 38 w~dIgGl~~~k~~L~e~v~~Pl~~p~~f~~~gl~~pp 74 (75)
+.|++|++++|+.+++.+.+ +.++..+.+.|+ .+|
T Consensus 22 ~~~l~Gl~~vK~~i~e~~~~-~~~~~~~~~~g~-~~~ 56 (287)
T CHL00181 22 DEELVGLAPVKTRIREIAAL-LLIDRLRKNLGL-TSS 56 (287)
T ss_pred HHhcCCcHHHHHHHHHHHHH-HHHHHHHHHcCC-CCC
Confidence 46899999999999999988 667788888884 554
No 34
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=91.20 E-value=0.26 Score=38.20 Aligned_cols=44 Identities=20% Similarity=0.427 Sum_probs=36.1
Q ss_pred cCCCCCCcchhhccCcHHHHHHHHHHhhccccCHHHHhcCCCCCCC
Q psy8938 29 VDPADINVSWEHIAGLDGTIKDLKQTVIFPIKHKEMFAKSKLTKAP 74 (75)
Q Consensus 29 v~p~~~~v~w~dIgGl~~~k~~L~e~v~~Pl~~p~~f~~~gl~~pp 74 (75)
..+.....+|+|++|++..++.+.+.+.+ +.+|+.|..++ ...|
T Consensus 142 ~~~~~~~~~~~di~g~~~~~~~l~~i~~~-~~~~~~~~~~~-~~~~ 185 (644)
T PRK10733 142 LTEDQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLG-GKIP 185 (644)
T ss_pred cCchhhhCcHHHHcCHHHHHHHHHHHHHH-hhCHHHHHhcC-CCCC
Confidence 44556678899999999999999999988 77888888777 3554
No 35
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=90.98 E-value=0.22 Score=34.73 Aligned_cols=33 Identities=9% Similarity=0.222 Sum_probs=28.5
Q ss_pred hhccCcHHHHHHHHHHhhccccCHHHHhcCCCCCC
Q psy8938 39 EHIAGLDGTIKDLKQTVIFPIKHKEMFAKSKLTKA 73 (75)
Q Consensus 39 ~dIgGl~~~k~~L~e~v~~Pl~~p~~f~~~gl~~p 73 (75)
++++|++++|+.+++.+.+ +.+++.+.+.|+ .+
T Consensus 22 ~~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~-~~ 54 (284)
T TIGR02880 22 RELIGLKPVKTRIREIAAL-LLVERLRQRLGL-AS 54 (284)
T ss_pred HhccCHHHHHHHHHHHHHH-HHHHHHHHHhCC-Cc
Confidence 3799999999999999999 788888888884 54
No 36
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=90.24 E-value=0.28 Score=35.47 Aligned_cols=33 Identities=9% Similarity=0.363 Sum_probs=29.8
Q ss_pred CCcchhhccCcHHHHHHHHHHhhccccCHHHHhc
Q psy8938 34 INVSWEHIAGLDGTIKDLKQTVIFPIKHKEMFAK 67 (75)
Q Consensus 34 ~~v~w~dIgGl~~~k~~L~e~v~~Pl~~p~~f~~ 67 (75)
++++++||.|+++.|...+-++.| |.+|+.|..
T Consensus 116 ~~it~ddViGqEeAK~kcrli~~y-LenPe~Fg~ 148 (368)
T COG1223 116 SDITLDDVIGQEEAKRKCRLIMEY-LENPERFGD 148 (368)
T ss_pred ccccHhhhhchHHHHHHHHHHHHH-hhChHHhcc
Confidence 489999999999999998888888 999999976
No 37
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=81.34 E-value=1.5 Score=29.82 Aligned_cols=24 Identities=17% Similarity=0.198 Sum_probs=20.9
Q ss_pred hhhccCcHHHHHHHHHHhhccccC
Q psy8938 38 WEHIAGLDGTIKDLKQTVIFPIKH 61 (75)
Q Consensus 38 w~dIgGl~~~k~~L~e~v~~Pl~~ 61 (75)
.+++.|++.+|+.+++.+.++..+
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~~ 28 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQIN 28 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHH
Confidence 478999999999999999887554
No 38
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=68.90 E-value=3.5 Score=30.35 Aligned_cols=25 Identities=12% Similarity=0.444 Sum_probs=22.0
Q ss_pred chhhccCcHHHHHHHHHHhhccccC
Q psy8938 37 SWEHIAGLDGTIKDLKQTVIFPIKH 61 (75)
Q Consensus 37 ~w~dIgGl~~~k~~L~e~v~~Pl~~ 61 (75)
.|++|.|.+.+++.|+.++..+..+
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~ 27 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARAD 27 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhcccc
Confidence 4999999999999999999887543
No 39
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=61.90 E-value=18 Score=19.37 Aligned_cols=50 Identities=20% Similarity=0.048 Sum_probs=24.1
Q ss_pred hHHHHHHhhcCcc--ccc--chHHHHHhccccCCCCCCc--chhhccCcHHHHHHH
Q psy8938 2 EAERKLKTLKINM--DSF--TDHEMSIASHLVDPADINV--SWEHIAGLDGTIKDL 51 (75)
Q Consensus 2 ~~~~~~~~l~~~~--~~~--~~~e~~ia~~~v~p~~~~v--~w~dIgGl~~~k~~L 51 (75)
+|++.|++.++.- .++ +.....+....-....|.+ .-.-|||.+++.+-|
T Consensus 16 ~ak~~L~~~~i~~~~~~v~~~~~~~~~~~~~g~~~vP~ifi~g~~igg~~~l~~~l 71 (72)
T cd03029 16 RAKAALQENGISYEEIPLGKDITGRSLRAVTGAMTVPQVFIDGELIGGSDDLEKYF 71 (72)
T ss_pred HHHHHHHHcCCCcEEEECCCChhHHHHHHHhCCCCcCeEEECCEEEeCHHHHHHHh
Confidence 5788888888752 222 2211111110011233433 223489988877643
No 40
>PF06820 Phage_fiber_C: Putative prophage tail fibre C-terminus; InterPro: IPR009640 This entry represents the C terminus of phage 933W tail fibre protein. This domain is found together with conserved RLGP motif. The characteristics of the protein distribution suggest prophage matches.
Probab=57.82 E-value=3.3 Score=23.14 Aligned_cols=11 Identities=45% Similarity=1.045 Sum_probs=8.9
Q ss_pred CcchhhccCcH
Q psy8938 35 NVSWEHIAGLD 45 (75)
Q Consensus 35 ~v~w~dIgGl~ 45 (75)
+=.|+||+|++
T Consensus 54 DGpWqdikgld 64 (64)
T PF06820_consen 54 DGPWQDIKGLD 64 (64)
T ss_pred cCChhhccCCC
Confidence 55699999985
No 41
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=46.78 E-value=41 Score=19.68 Aligned_cols=50 Identities=22% Similarity=0.252 Sum_probs=27.7
Q ss_pred hHHHHHHhhcCc--ccccchH------HHHHhccccCCCCCCc--chhhccCcHHHHHHH
Q psy8938 2 EAERKLKTLKIN--MDSFTDH------EMSIASHLVDPADINV--SWEHIAGLDGTIKDL 51 (75)
Q Consensus 2 ~~~~~~~~l~~~--~~~~~~~------e~~ia~~~v~p~~~~v--~w~dIgGl~~~k~~L 51 (75)
+|+++|.++++. .+++++. ...+....-..+.|.| .-.-|||.+++.+..
T Consensus 23 ~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi~g~~iGG~ddl~~l~ 82 (99)
T TIGR02189 23 VVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFVGGKLVGGLENVMALH 82 (99)
T ss_pred HHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEECCEEEcCHHHHHHHH
Confidence 578889999875 2333321 1223211112344544 346799999988643
No 42
>PRK10824 glutaredoxin-4; Provisional
Probab=45.49 E-value=40 Score=20.71 Aligned_cols=51 Identities=16% Similarity=0.063 Sum_probs=28.7
Q ss_pred hHHHHHHhhcCc--ccccc---hHHHHHhccccCCCCCCc--chhhccCcHHHHHHHH
Q psy8938 2 EAERKLKTLKIN--MDSFT---DHEMSIASHLVDPADINV--SWEHIAGLDGTIKDLK 52 (75)
Q Consensus 2 ~~~~~~~~l~~~--~~~~~---~~e~~ia~~~v~p~~~~v--~w~dIgGl~~~k~~L~ 52 (75)
+|.++|+++++. .+++. +....+....-.+..|.| .-.-|||.+++.+..+
T Consensus 35 ~ak~lL~~~~i~~~~idi~~d~~~~~~l~~~sg~~TVPQIFI~G~~IGG~ddl~~l~~ 92 (115)
T PRK10824 35 QAVQALSACGERFAYVDILQNPDIRAELPKYANWPTFPQLWVDGELVGGCDIVIEMYQ 92 (115)
T ss_pred HHHHHHHHcCCCceEEEecCCHHHHHHHHHHhCCCCCCeEEECCEEEcChHHHHHHHH
Confidence 578888888865 23332 222222221123455544 4578999999987543
No 43
>KOG1766|consensus
Probab=40.87 E-value=35 Score=20.86 Aligned_cols=28 Identities=21% Similarity=0.370 Sum_probs=22.4
Q ss_pred cCCCCCCcchhhccCcHHHHHHHHHHhhc
Q psy8938 29 VDPADINVSWEHIAGLDGTIKDLKQTVIF 57 (75)
Q Consensus 29 v~p~~~~v~w~dIgGl~~~k~~L~e~v~~ 57 (75)
.+|+.+++++ ||..+-+-+..|.+...+
T Consensus 43 ~nPs~~~ITY-DIsqlfeFiD~L~DlS~l 70 (104)
T KOG1766|consen 43 KNPSAPPITY-DISQLFEFIDDLADLSML 70 (104)
T ss_pred cCCCCCCcce-eHHHHHHHHHHHhhhhhh
Confidence 5789899998 788888888888876554
No 44
>KOG4009|consensus
Probab=40.50 E-value=15 Score=23.88 Aligned_cols=19 Identities=16% Similarity=0.284 Sum_probs=16.6
Q ss_pred CcchhhccCcHHHHHHHHH
Q psy8938 35 NVSWEHIAGLDGTIKDLKQ 53 (75)
Q Consensus 35 ~v~w~dIgGl~~~k~~L~e 53 (75)
.+.|.|+||..++++++..
T Consensus 116 f~kygdLGgys~ar~aymK 134 (156)
T KOG4009|consen 116 FVKYGDLGGYSSARKAYMK 134 (156)
T ss_pred hhhhccccccchHHHHHHH
Confidence 6789999999999988765
No 45
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=40.39 E-value=11 Score=25.74 Aligned_cols=21 Identities=10% Similarity=0.069 Sum_probs=18.7
Q ss_pred chhhccCcHHHHHHHHHHhhc
Q psy8938 37 SWEHIAGLDGTIKDLKQTVIF 57 (75)
Q Consensus 37 ~w~dIgGl~~~k~~L~e~v~~ 57 (75)
+|+|+.|.+++++.|+..+..
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~ 22 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEA 22 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHH
Confidence 699999999999999988754
No 46
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=37.96 E-value=62 Score=18.81 Aligned_cols=50 Identities=16% Similarity=0.053 Sum_probs=26.8
Q ss_pred hHHHHHHhhcCc--ccccc---hHHHHHhccccCCCCCCcc--hhhccCcHHHHHHH
Q psy8938 2 EAERKLKTLKIN--MDSFT---DHEMSIASHLVDPADINVS--WEHIAGLDGTIKDL 51 (75)
Q Consensus 2 ~~~~~~~~l~~~--~~~~~---~~e~~ia~~~v~p~~~~v~--w~dIgGl~~~k~~L 51 (75)
+++++|+.+++. .+++. +....+..-.-.+..|.|. -.-|||.+++.+..
T Consensus 32 ~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi~g~~iGG~ddl~~l~ 88 (97)
T TIGR00365 32 RAVQILKACGVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYVKGEFVGGCDIIMEMY 88 (97)
T ss_pred HHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhCCCCCCEEEECCEEEeChHHHHHHH
Confidence 578888888875 23321 1112222111123445443 35599999988643
No 47
>PHA01351 putative minor structural protein
Probab=36.74 E-value=36 Score=27.88 Aligned_cols=60 Identities=17% Similarity=0.346 Sum_probs=41.6
Q ss_pred hHHHHHHhhcCcccccchHHHHHhccccCCCCCCc-chhhccCcHHHHHHHHHHhhccccCHHHHhcCCCCCCC
Q psy8938 2 EAERKLKTLKINMDSFTDHEMSIASHLVDPADINV-SWEHIAGLDGTIKDLKQTVIFPIKHKEMFAKSKLTKAP 74 (75)
Q Consensus 2 ~~~~~~~~l~~~~~~~~~~e~~ia~~~v~p~~~~v-~w~dIgGl~~~k~~L~e~v~~Pl~~p~~f~~~gl~~pp 74 (75)
.+++++...|+.++.|-| |+-..+ .|--.-...++|+.++|.+.+ -.||.-|...= ++||
T Consensus 253 s~reifneiglgdipfad-----------p~f~~i~~wv~arsf~e~kdh~ket~ll-tgy~~wftday-lq~p 313 (1070)
T PHA01351 253 SAREIFNEIGLGDLPFAD-----------PPFQLIGRWVAVRSFNEVKDHLKETILL-TGYPAWFTDAY-LESP 313 (1070)
T ss_pred hHHHHHHhcCCCCCCCCC-----------CcHHHHHHHHHHhhHHHHHHHHHhHHHH-hCcHHHHHhhh-cCCc
Confidence 356666777766666655 332222 487888899999999999887 67777777655 3666
No 48
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=35.06 E-value=79 Score=17.28 Aligned_cols=49 Identities=16% Similarity=0.039 Sum_probs=24.5
Q ss_pred hHHHHHHhhcCc--ccccchHHH--HHhccccCCCCCCc--chhhccCcHHHHHH
Q psy8938 2 EAERKLKTLKIN--MDSFTDHEM--SIASHLVDPADINV--SWEHIAGLDGTIKD 50 (75)
Q Consensus 2 ~~~~~~~~l~~~--~~~~~~~e~--~ia~~~v~p~~~~v--~w~dIgGl~~~k~~ 50 (75)
++++.|++.++. .+++++.+. .+....-..+.|.+ .-.-|||.+++.+-
T Consensus 23 ~ak~~L~~~gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~i~g~~igG~~~l~~~ 77 (79)
T TIGR02190 23 KAKATLKEKGYDFEEIPLGNDARGRSLRAVTGATTVPQVFIGGKLIGGSDELEAY 77 (79)
T ss_pred HHHHHHHHcCCCcEEEECCCChHHHHHHHHHCCCCcCeEEECCEEEcCHHHHHHH
Confidence 577888888875 233332211 12111011233433 23458999877654
No 49
>PRK14585 pgaD putative PGA biosynthesis protein; Provisional
Probab=32.00 E-value=22 Score=22.91 Aligned_cols=20 Identities=5% Similarity=0.174 Sum_probs=16.1
Q ss_pred CCCCCCcchhhccCcHHHHH
Q psy8938 30 DPADINVSWEHIAGLDGTIK 49 (75)
Q Consensus 30 ~p~~~~v~w~dIgGl~~~k~ 49 (75)
.+...+|..||.|.+.++..
T Consensus 111 ~~~~lTvh~D~~G~i~~v~~ 130 (137)
T PRK14585 111 KSHRMSVHFTSQGQIKMVVS 130 (137)
T ss_pred cCCeEEEEEcCCCCchhhhH
Confidence 45566899999999988775
No 50
>KOG1752|consensus
Probab=30.49 E-value=98 Score=18.67 Aligned_cols=48 Identities=17% Similarity=0.153 Sum_probs=29.0
Q ss_pred hHHHHHHhhcCc--------ccccchHHHHHhccccCCCCCCc--chhhccCcHHHHH
Q psy8938 2 EAERKLKTLKIN--------MDSFTDHEMSIASHLVDPADINV--SWEHIAGLDGTIK 49 (75)
Q Consensus 2 ~~~~~~~~l~~~--------~~~~~~~e~~ia~~~v~p~~~~v--~w~dIgGl~~~k~ 49 (75)
++++++..++.. ..+-++.|+++..-......|.| .-.-|||.+++.+
T Consensus 29 ~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI~Gk~iGG~~dl~~ 86 (104)
T KOG1752|consen 29 RAKELLSDLGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFIGGKFIGGASDLMA 86 (104)
T ss_pred HHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEECCEEEcCHHHHHH
Confidence 366777776643 23334666666643334455544 4578999998875
No 51
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=29.65 E-value=96 Score=16.47 Aligned_cols=52 Identities=13% Similarity=0.125 Sum_probs=26.7
Q ss_pred hHHHHHHhhcCc----ccccchH------HHHHhccccCCCCCCc--chhhccCcHHHHHHHHH
Q psy8938 2 EAERKLKTLKIN----MDSFTDH------EMSIASHLVDPADINV--SWEHIAGLDGTIKDLKQ 53 (75)
Q Consensus 2 ~~~~~~~~l~~~----~~~~~~~------e~~ia~~~v~p~~~~v--~w~dIgGl~~~k~~L~e 53 (75)
++...+.++++. ..+++.. ...+....-....|.+ .-.-|||.+++++..++
T Consensus 14 ~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i~g~~igg~~~~~~~~~~ 77 (84)
T TIGR02180 14 KAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFINGKFIGGCSDLLALYKS 77 (84)
T ss_pred HHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHHc
Confidence 456777788754 2333221 1122221112334433 33569999998876654
No 52
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=29.02 E-value=51 Score=22.89 Aligned_cols=22 Identities=18% Similarity=0.404 Sum_probs=19.3
Q ss_pred cchhhccCcHHHHHHHHHHhhc
Q psy8938 36 VSWEHIAGLDGTIKDLKQTVIF 57 (75)
Q Consensus 36 v~w~dIgGl~~~k~~L~e~v~~ 57 (75)
.+|+||.|.+.+++.|+..+.-
T Consensus 11 ~~~~~iig~~~~~~~l~~~~~~ 32 (355)
T TIGR02397 11 QTFEDVIGQEHIVQTLKNAIKN 32 (355)
T ss_pred CcHhhccCcHHHHHHHHHHHHc
Confidence 4699999999999999998754
No 53
>PF15061 DUF4538: Domain of unknown function (DUF4538)
Probab=28.07 E-value=40 Score=18.62 Aligned_cols=19 Identities=21% Similarity=0.280 Sum_probs=15.7
Q ss_pred HHHHHHhhccccCHHHHhc
Q psy8938 49 KDLKQTVIFPIKHKEMFAK 67 (75)
Q Consensus 49 ~~L~e~v~~Pl~~p~~f~~ 67 (75)
.++-..+..|+.|||.|++
T Consensus 20 ~a~Ypi~~~Pmm~~eeYk~ 38 (58)
T PF15061_consen 20 AALYPIYFRPMMNPEEYKK 38 (58)
T ss_pred HHHhhhhcccccChHHHHH
Confidence 4566788999999999976
No 54
>PF11291 DUF3091: Protein of unknown function (DUF3091); InterPro: IPR021442 This eukaryotic family of proteins has no known function.
Probab=26.49 E-value=70 Score=19.45 Aligned_cols=25 Identities=16% Similarity=0.323 Sum_probs=18.5
Q ss_pred CCCC-CcchhhccCcHHHHHHHHHHh
Q psy8938 31 PADI-NVSWEHIAGLDGTIKDLKQTV 55 (75)
Q Consensus 31 p~~~-~v~w~dIgGl~~~k~~L~e~v 55 (75)
+..| ++.++|++.|+..+..-+..+
T Consensus 46 C~~PeNI~~~D~~~L~~~I~~~q~~~ 71 (100)
T PF11291_consen 46 CNRPENISEKDLNNLENSIQNYQSDI 71 (100)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHhH
Confidence 3334 889999999999886655543
No 55
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=26.37 E-value=55 Score=24.44 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=19.3
Q ss_pred cchhhccCcHHHHHHHHHHhhc
Q psy8938 36 VSWEHIAGLDGTIKDLKQTVIF 57 (75)
Q Consensus 36 v~w~dIgGl~~~k~~L~e~v~~ 57 (75)
.+|+||.|.+.+++.|+..+..
T Consensus 14 ~~~~diiGq~~~v~~L~~~i~~ 35 (451)
T PRK06305 14 QTFSEILGQDAVVAVLKNALRF 35 (451)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc
Confidence 3599999999999999998764
No 56
>PRK11235 bifunctional antitoxin/transcriptional repressor RelB; Provisional
Probab=26.06 E-value=96 Score=17.97 Aligned_cols=51 Identities=20% Similarity=0.076 Sum_probs=29.5
Q ss_pred hHHHHHHhhcCcc-cccchHHHHHhccccCCCC-CCcchhhccCcHHHHHHHH
Q psy8938 2 EAERKLKTLKINM-DSFTDHEMSIASHLVDPAD-INVSWEHIAGLDGTIKDLK 52 (75)
Q Consensus 2 ~~~~~~~~l~~~~-~~~~~~e~~ia~~~v~p~~-~~v~w~dIgGl~~~k~~L~ 52 (75)
+|.++++++|++. --++-|-..++..--.|-. ..++=+|--.++.+++.|+
T Consensus 15 ~A~~vl~~lGls~S~Ai~~fl~qi~~~~~iPF~~~~~s~ed~~~l~~~re~~~ 67 (80)
T PRK11235 15 RAYAVLEKLGVTPSEALRLLLQYVAENGRLPFKTVLLSDEDAALLETVRERLA 67 (80)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHh
Confidence 5788999999875 4445555555444333443 2344556555655555544
No 57
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=25.52 E-value=57 Score=24.84 Aligned_cols=22 Identities=9% Similarity=0.246 Sum_probs=18.9
Q ss_pred cchhhccCcHHHHHHHHHHhhc
Q psy8938 36 VSWEHIAGLDGTIKDLKQTVIF 57 (75)
Q Consensus 36 v~w~dIgGl~~~k~~L~e~v~~ 57 (75)
.+|+||.|.+++++.|+..+.-
T Consensus 11 ~~~~dvvGq~~v~~~L~~~i~~ 32 (504)
T PRK14963 11 ITFDEVVGQEHVKEVLLAALRQ 32 (504)
T ss_pred CCHHHhcChHHHHHHHHHHHHc
Confidence 3499999999999999988754
No 58
>KOG2154|consensus
Probab=25.34 E-value=49 Score=25.52 Aligned_cols=38 Identities=13% Similarity=0.207 Sum_probs=21.0
Q ss_pred CcchhhccCcHHHH---HHHHHHhhccccCHHHHhc-CCCCC
Q psy8938 35 NVSWEHIAGLDGTI---KDLKQTVIFPIKHKEMFAK-SKLTK 72 (75)
Q Consensus 35 ~v~w~dIgGl~~~k---~~L~e~v~~Pl~~p~~f~~-~gl~~ 72 (75)
.-.++|+||.-++. .-..=+...-+.||.+|.+ ++|+.
T Consensus 282 tdsyd~~~g~vslLALngLF~Lm~khNleYP~FY~KLY~Ll~ 323 (505)
T KOG2154|consen 282 TDSYDDIGGVVSLLALNGLFILMTKHNLEYPDFYEKLYALLN 323 (505)
T ss_pred HHHHhccCCchhHHHHhHHHHHHHHcCCCCchHHHHHHHhcC
Confidence 34578899922221 2222233456888888887 45433
No 59
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=25.33 E-value=1.1e+02 Score=19.51 Aligned_cols=49 Identities=8% Similarity=0.104 Sum_probs=26.4
Q ss_pred hHHHHHHhhcCc--cccc--c-hHHHHHhcccc----CCCCCC--cchhhccCcHHHHHH
Q psy8938 2 EAERKLKTLKIN--MDSF--T-DHEMSIASHLV----DPADIN--VSWEHIAGLDGTIKD 50 (75)
Q Consensus 2 ~~~~~~~~l~~~--~~~~--~-~~e~~ia~~~v----~p~~~~--v~w~dIgGl~~~k~~ 50 (75)
+++++|+++++. ..|+ + ++.+-+....- .+..|. |.-.-|||.+++.+.
T Consensus 21 ~ak~iL~~~~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI~G~~IGG~del~~L 80 (147)
T cd03031 21 NVRAILESFRVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFVDGRYLGGAEEVLRL 80 (147)
T ss_pred HHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEECCEEEecHHHHHHH
Confidence 578889999876 2222 2 11211211111 133443 344779999998863
No 60
>PF08195 TRI9: TRI9 protein; InterPro: IPR013265 This entry contains putative genes, of 129 bp, from the Trichothecene gene cluster of Fusarium sporotrichioides and Gibberella zeae (Fusarium graminearum) that encode a predicted protein of 43 amino acids whose function is unknown [, ].
Probab=25.22 E-value=46 Score=16.92 Aligned_cols=25 Identities=28% Similarity=0.476 Sum_probs=19.2
Q ss_pred CCCCCcchhhccCcHHHHHHHHHHh
Q psy8938 31 PADINVSWEHIAGLDGTIKDLKQTV 55 (75)
Q Consensus 31 p~~~~v~w~dIgGl~~~k~~L~e~v 55 (75)
..+|+|+|-.+-.+..+..+|.-.|
T Consensus 12 ~~dp~vswle~~aysgvsaalcati 36 (43)
T PF08195_consen 12 DMDPDVSWLEVCAYSGVSAALCATI 36 (43)
T ss_pred cCCCCccHHHhhHhcchhHHHHHHH
Confidence 4568899998888888877777654
No 61
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=25.01 E-value=60 Score=25.04 Aligned_cols=21 Identities=10% Similarity=0.322 Sum_probs=18.8
Q ss_pred chhhccCcHHHHHHHHHHhhc
Q psy8938 37 SWEHIAGLDGTIKDLKQTVIF 57 (75)
Q Consensus 37 ~w~dIgGl~~~k~~L~e~v~~ 57 (75)
+|+||.|.+++++.|+..+.-
T Consensus 14 ~f~~iiGq~~v~~~L~~~i~~ 34 (576)
T PRK14965 14 TFSDLTGQEHVSRTLQNAIDT 34 (576)
T ss_pred CHHHccCcHHHHHHHHHHHHc
Confidence 499999999999999998764
No 62
>PF10945 DUF2629: Protein of unknown function (DUF2629); InterPro: IPR024487 Some members in this family of proteins are annotated as YhjR however currently no function is known.
Probab=23.96 E-value=71 Score=16.65 Aligned_cols=25 Identities=12% Similarity=0.316 Sum_probs=19.4
Q ss_pred CCCCcchhhccCcHHHHHHHHHHhhccc
Q psy8938 32 ADINVSWEHIAGLDGTIKDLKQTVIFPI 59 (75)
Q Consensus 32 ~~~~v~w~dIgGl~~~k~~L~e~v~~Pl 59 (75)
+.|++.+-||.-.+.+-+.+.. |||
T Consensus 14 slp~~~Y~DIsr~e~l~~~~~R---WPL 38 (44)
T PF10945_consen 14 SLPDINYIDISREERLNQALQR---WPL 38 (44)
T ss_pred CCCCccHHHHHHHHHHHHHHHH---Chh
Confidence 3457889999988888888877 565
No 63
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=23.46 E-value=71 Score=22.88 Aligned_cols=22 Identities=9% Similarity=0.231 Sum_probs=19.3
Q ss_pred cchhhccCcHHHHHHHHHHhhc
Q psy8938 36 VSWEHIAGLDGTIKDLKQTVIF 57 (75)
Q Consensus 36 v~w~dIgGl~~~k~~L~e~v~~ 57 (75)
-+|+||.|.+.+++.|+..+..
T Consensus 13 ~~~~~iiGq~~~~~~l~~~~~~ 34 (363)
T PRK14961 13 QYFRDIIGQKHIVTAISNGLSL 34 (363)
T ss_pred CchhhccChHHHHHHHHHHHHc
Confidence 3599999999999999998765
No 64
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=23.41 E-value=71 Score=22.20 Aligned_cols=21 Identities=24% Similarity=0.425 Sum_probs=18.4
Q ss_pred chhhccCcHHHHHHHHHHhhc
Q psy8938 37 SWEHIAGLDGTIKDLKQTVIF 57 (75)
Q Consensus 37 ~w~dIgGl~~~k~~L~e~v~~ 57 (75)
+|+||-|.+.+++.|+..+.-
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~ 22 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIK 22 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHc
Confidence 589999999999999998754
No 65
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=22.82 E-value=1.4e+02 Score=15.86 Aligned_cols=48 Identities=6% Similarity=-0.020 Sum_probs=24.4
Q ss_pred hHHHHHHhhcCc--ccccchHH---HHHhccccCCCCCCc--chhhccCcHHHHH
Q psy8938 2 EAERKLKTLKIN--MDSFTDHE---MSIASHLVDPADINV--SWEHIAGLDGTIK 49 (75)
Q Consensus 2 ~~~~~~~~l~~~--~~~~~~~e---~~ia~~~v~p~~~~v--~w~dIgGl~~~k~ 49 (75)
+|++.|++.++. ..++.+-. ..+....-....|.+ .-.-|||++++.+
T Consensus 16 ka~~~L~~~gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i~~~~iGg~~~~~~ 70 (73)
T cd03027 16 AVRLFLREKGLPYVEINIDIFPERKAELEERTGSSVVPQIFFNEKLVGGLTDLKS 70 (73)
T ss_pred HHHHHHHHCCCceEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEEEeCHHHHHh
Confidence 577888888875 23332211 111110011223433 3467999998875
No 66
>PF07476 MAAL_C: Methylaspartate ammonia-lyase C-terminus; InterPro: IPR022662 Methylaspartate ammonia-lyase 4.3.1.2 from EC catalyses the second step of fermentation of glutamate. It is a homodimer. This domain represents the C-terminal region of methylaspartate ammonia-lyase and contains a TIM barrel fold similar to the PF01188 from PFAM. This domain represents the catalytic domain and contains a metal binding site []. ; PDB: 1KKO_B 1KKR_A 3ZVI_A 1KD0_B 1KCZ_B 3ZVH_A.
Probab=21.51 E-value=44 Score=23.52 Aligned_cols=33 Identities=15% Similarity=0.313 Sum_probs=20.8
Q ss_pred cccchHHHHHhccccCCCCCCcchhhccCcHHHHHHHH
Q psy8938 15 DSFTDHEMSIASHLVDPADINVSWEHIAGLDGTIKDLK 52 (75)
Q Consensus 15 ~~~~~~e~~ia~~~v~p~~~~v~w~dIgGl~~~k~~L~ 52 (75)
.|+.+|-.+=|..+|.-+.| |+||+.++++++.
T Consensus 151 eDI~~F~da~A~dmVQIKtP-----DLGgi~ntieAvl 183 (248)
T PF07476_consen 151 EDIREFADAKAADMVQIKTP-----DLGGINNTIEAVL 183 (248)
T ss_dssp HHHHHHHHTT-SSEEEE-GG-----GGSSTHHHHHHHH
T ss_pred HHHHHHHhcCCcCEEEecCC-----CccchhhHHHHHH
Confidence 34445555556666665555 9999999997654
No 67
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=21.05 E-value=36 Score=23.71 Aligned_cols=25 Identities=20% Similarity=0.267 Sum_probs=17.2
Q ss_pred cCCCCCCcchhhccCcHHHHHHHHHHhhc
Q psy8938 29 VDPADINVSWEHIAGLDGTIKDLKQTVIF 57 (75)
Q Consensus 29 v~p~~~~v~w~dIgGl~~~k~~L~e~v~~ 57 (75)
+.|. +++|+.|++++++.++-.+..
T Consensus 18 lRP~----~L~efiGQ~~l~~~l~i~i~a 42 (233)
T PF05496_consen 18 LRPK----SLDEFIGQEHLKGNLKILIRA 42 (233)
T ss_dssp TS-S----SCCCS-S-HHHHHHHHHHHHH
T ss_pred cCCC----CHHHccCcHHHHhhhHHHHHH
Confidence 4555 499999999999998866554
Done!