Query psy8938
Match_columns 75
No_of_seqs 121 out of 1025
Neff 7.0
Searched_HMMs 29240
Date Fri Aug 16 23:16:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8938.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8938hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_J 26S protease regulatory 99.3 3.7E-13 1.3E-17 97.0 3.0 45 30-75 139-183 (405)
2 4b4t_L 26S protease subunit RP 99.2 7.2E-12 2.5E-16 90.9 3.2 43 32-75 174-216 (437)
3 4b4t_H 26S protease regulatory 99.2 7.1E-12 2.4E-16 91.8 3.0 43 32-75 202-244 (467)
4 4b4t_I 26S protease regulatory 99.2 7.7E-12 2.6E-16 91.0 2.8 44 31-75 174-217 (437)
5 4b4t_K 26S protease regulatory 99.1 2.7E-11 9.1E-16 87.7 3.7 43 32-75 165-207 (428)
6 4b4t_M 26S protease regulatory 99.1 2.4E-11 8.1E-16 88.1 3.2 43 32-75 174-216 (434)
7 3cf2_A TER ATPase, transitiona 98.8 1.5E-09 5.2E-14 83.5 3.1 60 15-75 447-512 (806)
8 3cf2_A TER ATPase, transitiona 98.8 1.2E-09 4.2E-14 84.0 2.1 42 33-75 198-239 (806)
9 2x8a_A Nuclear valosin-contain 98.6 1.1E-08 3.8E-13 69.3 2.4 43 32-75 3-45 (274)
10 3cf0_A Transitional endoplasmi 98.5 5.3E-08 1.8E-12 66.2 3.2 46 29-75 5-50 (301)
11 1xwi_A SKD1 protein; VPS4B, AA 98.5 6.3E-08 2.2E-12 66.7 2.6 42 31-74 4-45 (322)
12 2qp9_X Vacuolar protein sortin 98.0 2.4E-06 8.1E-11 59.5 2.4 40 28-67 40-79 (355)
13 3eie_A Vacuolar protein sortin 98.0 2.5E-06 8.7E-11 58.2 2.5 40 29-68 8-47 (322)
14 2zan_A Vacuolar protein sortin 97.9 5.5E-06 1.9E-10 59.3 2.6 39 29-67 124-162 (444)
15 3h4m_A Proteasome-activating n 97.7 2.2E-05 7.6E-10 51.9 3.5 43 31-74 9-51 (285)
16 3b9p_A CG5977-PA, isoform A; A 97.6 4.9E-05 1.7E-09 50.6 3.3 41 29-69 11-51 (297)
17 1ypw_A Transitional endoplasmi 97.5 3.2E-05 1.1E-09 59.2 1.8 42 33-75 198-239 (806)
18 2qz4_A Paraplegin; AAA+, SPG7, 97.5 5.6E-05 1.9E-09 49.1 2.5 39 34-74 1-39 (262)
19 3hu3_A Transitional endoplasmi 97.3 0.00013 4.3E-09 53.2 3.3 41 34-75 199-239 (489)
20 3d8b_A Fidgetin-like protein 1 97.3 0.00011 3.9E-09 50.8 2.4 40 30-69 75-114 (357)
21 2r62_A Cell division protease 97.3 0.00011 3.7E-09 48.2 2.1 44 29-74 1-44 (268)
22 2ce7_A Cell division protein F 97.3 0.00031 1.1E-08 51.2 4.7 45 29-75 5-50 (476)
23 1lv7_A FTSH; alpha/beta domain 97.3 0.00012 4.2E-09 47.9 2.3 43 31-75 4-46 (257)
24 1ypw_A Transitional endoplasmi 97.0 0.00018 6.1E-09 55.1 1.1 42 32-74 470-511 (806)
25 1ixz_A ATP-dependent metallopr 96.9 0.0012 4E-08 43.0 4.5 44 29-74 6-49 (254)
26 3vfd_A Spastin; ATPase, microt 96.7 0.00095 3.2E-08 46.5 2.6 39 31-69 107-145 (389)
27 2dhr_A FTSH; AAA+ protein, hex 96.4 0.0022 7.6E-08 47.0 3.5 40 34-75 26-65 (499)
28 1iy2_A ATP-dependent metallopr 95.9 0.011 3.9E-07 39.0 4.7 44 29-74 30-73 (278)
29 3cmw_A Protein RECA, recombina 95.7 0.0017 5.9E-08 53.6 -0.2 36 32-67 1013-1058(1706)
30 3hu3_A Transitional endoplasmi 95.3 0.0038 1.3E-07 45.5 0.6 32 15-46 447-484 (489)
31 3syl_A Protein CBBX; photosynt 83.4 0.72 2.4E-05 30.2 2.5 31 38-69 30-60 (309)
32 1g41_A Heat shock protein HSLU 77.3 1.2 4.1E-05 32.2 2.1 31 39-69 15-45 (444)
33 3qwz_A Transitional endoplasmi 70.1 1.2 3.9E-05 29.3 0.5 11 33-43 201-211 (211)
34 2c9o_A RUVB-like 1; hexameric 49.3 13 0.00045 26.1 3.0 24 33-56 31-54 (456)
35 2lqo_A Putative glutaredoxin R 47.0 35 0.0012 18.8 4.6 56 2-57 19-85 (92)
36 3gx8_A Monothiol glutaredoxin- 46.8 32 0.0011 19.8 4.0 51 2-52 36-96 (121)
37 3ipz_A Monothiol glutaredoxin- 36.4 57 0.0019 18.1 4.0 51 2-52 38-95 (109)
38 2wul_A Glutaredoxin related pr 36.2 50 0.0017 19.3 3.7 51 2-52 40-98 (118)
39 1aba_A Glutaredoxin; electron 36.0 23 0.00079 18.7 2.1 12 2-13 19-30 (87)
40 3hym_A Anaphase-promoting comp 35.9 14 0.00049 16.9 1.0 23 30-52 5-27 (29)
41 3kts_A Glycerol uptake operon 33.5 14 0.00049 23.8 1.0 52 15-69 17-68 (192)
42 3msz_A Glutaredoxin 1; alpha-b 31.2 56 0.0019 16.6 3.6 53 2-54 19-85 (89)
43 2ct6_A SH3 domain-binding glut 29.7 60 0.002 18.1 3.2 50 2-51 29-93 (111)
44 3h8q_A Thioredoxin reductase 3 26.9 87 0.003 17.3 3.7 51 2-52 32-92 (114)
45 2wem_A Glutaredoxin-related pr 25.9 99 0.0034 17.7 4.1 51 2-52 40-98 (118)
46 1u6t_A SH3 domain-binding glut 25.6 81 0.0028 18.6 3.4 12 2-13 21-32 (121)
47 1t1v_A SH3BGRL3, SH3 domain-bi 24.0 90 0.0031 16.5 3.3 51 2-52 23-82 (93)
48 3zyw_A Glutaredoxin-3; metal b 23.8 97 0.0033 17.3 3.4 51 2-52 36-93 (111)
49 3pfi_A Holliday junction ATP-d 22.2 62 0.0021 21.1 2.6 22 37-58 27-48 (338)
50 1g8p_A Magnesium-chelatase 38 21.2 87 0.003 20.3 3.2 26 33-58 18-43 (350)
51 3ctg_A Glutaredoxin-2; reduced 20.4 89 0.003 18.0 2.8 51 2-52 52-116 (129)
No 1
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.34 E-value=3.7e-13 Score=97.04 Aligned_cols=45 Identities=27% Similarity=0.528 Sum_probs=41.5
Q ss_pred CCCCCCcchhhccCcHHHHHHHHHHhhccccCHHHHhcCCCCCCCC
Q psy8938 30 DPADINVSWEHIAGLDGTIKDLKQTVIFPIKHKEMFAKSKLTKAPK 75 (75)
Q Consensus 30 ~p~~~~v~w~dIgGl~~~k~~L~e~v~~Pl~~p~~f~~~gl~~ppk 75 (75)
..+.|+|+|+||||++++|++|+|+|.||++||++|.++| +.|||
T Consensus 139 ~~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~g-i~~pr 183 (405)
T 4b4t_J 139 VEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLG-IAQPK 183 (405)
T ss_dssp EECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHT-CCCCC
T ss_pred ccCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCC-CCCCC
Confidence 3456899999999999999999999999999999999999 68886
No 2
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.19 E-value=7.2e-12 Score=90.88 Aligned_cols=43 Identities=28% Similarity=0.641 Sum_probs=40.4
Q ss_pred CCCCcchhhccCcHHHHHHHHHHhhccccCHHHHhcCCCCCCCC
Q psy8938 32 ADINVSWEHIAGLDGTIKDLKQTVIFPIKHKEMFAKSKLTKAPK 75 (75)
Q Consensus 32 ~~~~v~w~dIgGl~~~k~~L~e~v~~Pl~~p~~f~~~gl~~ppk 75 (75)
+.|+|+|+||||++++|++|++.|.+|++||++|.++| +.|||
T Consensus 174 ~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g-~~~pr 216 (437)
T 4b4t_L 174 EQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVG-IKPPK 216 (437)
T ss_dssp ESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHC-CCCCC
T ss_pred cCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCC-CCCCC
Confidence 45799999999999999999999999999999999999 69886
No 3
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.19 E-value=7.1e-12 Score=91.77 Aligned_cols=43 Identities=26% Similarity=0.485 Sum_probs=40.6
Q ss_pred CCCCcchhhccCcHHHHHHHHHHhhccccCHHHHhcCCCCCCCC
Q psy8938 32 ADINVSWEHIAGLDGTIKDLKQTVIFPIKHKEMFAKSKLTKAPK 75 (75)
Q Consensus 32 ~~~~v~w~dIgGl~~~k~~L~e~v~~Pl~~p~~f~~~gl~~ppk 75 (75)
+.|+|+|+||||++++|++|+|.|.+|+.||++|.++| +.|||
T Consensus 202 e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~G-i~ppr 244 (467)
T 4b4t_H 202 EKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLG-IDPPK 244 (467)
T ss_dssp SSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHT-CCCCS
T ss_pred CCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCC-CCCCC
Confidence 45799999999999999999999999999999999999 68886
No 4
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.18 E-value=7.7e-12 Score=90.99 Aligned_cols=44 Identities=30% Similarity=0.610 Sum_probs=41.0
Q ss_pred CCCCCcchhhccCcHHHHHHHHHHhhccccCHHHHhcCCCCCCCC
Q psy8938 31 PADINVSWEHIAGLDGTIKDLKQTVIFPIKHKEMFAKSKLTKAPK 75 (75)
Q Consensus 31 p~~~~v~w~dIgGl~~~k~~L~e~v~~Pl~~p~~f~~~gl~~ppk 75 (75)
.+.|+|+|+||||++++|++|+|.|.+|++||+.|+++| +.|||
T Consensus 174 ~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~G-i~~pr 217 (437)
T 4b4t_I 174 DKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMG-IKPPK 217 (437)
T ss_dssp ESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHT-CCCCS
T ss_pred ccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCC-CCCCC
Confidence 356899999999999999999999999999999999999 68886
No 5
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.13 E-value=2.7e-11 Score=87.68 Aligned_cols=43 Identities=16% Similarity=0.518 Sum_probs=40.4
Q ss_pred CCCCcchhhccCcHHHHHHHHHHhhccccCHHHHhcCCCCCCCC
Q psy8938 32 ADINVSWEHIAGLDGTIKDLKQTVIFPIKHKEMFAKSKLTKAPK 75 (75)
Q Consensus 32 ~~~~v~w~dIgGl~~~k~~L~e~v~~Pl~~p~~f~~~gl~~ppk 75 (75)
+.|+|+|+||||++++|+.|++.|.+|++||+.|.++| +.|||
T Consensus 165 ~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g-~~~pr 207 (428)
T 4b4t_K 165 EKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIG-IDPPR 207 (428)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHC-CCCCC
T ss_pred CCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCC-CCCCc
Confidence 45799999999999999999999999999999999999 68886
No 6
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.12 E-value=2.4e-11 Score=88.12 Aligned_cols=43 Identities=26% Similarity=0.589 Sum_probs=40.3
Q ss_pred CCCCcchhhccCcHHHHHHHHHHhhccccCHHHHhcCCCCCCCC
Q psy8938 32 ADINVSWEHIAGLDGTIKDLKQTVIFPIKHKEMFAKSKLTKAPK 75 (75)
Q Consensus 32 ~~~~v~w~dIgGl~~~k~~L~e~v~~Pl~~p~~f~~~gl~~ppk 75 (75)
+.|+++|+||||++++|++|++.|.+|++||++|+++| +.|||
T Consensus 174 ~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g-~~~pr 216 (434)
T 4b4t_M 174 EKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMG-IRAPK 216 (434)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHC-CCCCC
T ss_pred CCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCC-CCCCC
Confidence 45799999999999999999999999999999999999 58886
No 7
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=98.82 E-value=1.5e-09 Score=83.54 Aligned_cols=60 Identities=23% Similarity=0.450 Sum_probs=47.6
Q ss_pred cccchHHHHHhcc------ccCCCCCCcchhhccCcHHHHHHHHHHhhccccCHHHHhcCCCCCCCC
Q psy8938 15 DSFTDHEMSIASH------LVDPADINVSWEHIAGLDGTIKDLKQTVIFPIKHKEMFAKSKLTKAPK 75 (75)
Q Consensus 15 ~~~~~~e~~ia~~------~v~p~~~~v~w~dIgGl~~~k~~L~e~v~~Pl~~p~~f~~~gl~~ppk 75 (75)
+..+||+.++... .+..+.|+|+|+||||++++|++|++.|.||++||+.|.++| ++||+
T Consensus 447 v~~~Df~~Al~~~~ps~~r~~~~~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g-~~~~~ 512 (806)
T 3cf2_A 447 VTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFG-MTPSK 512 (806)
T ss_dssp ECTTHHHHHHSSSSCCCCCCCCCBCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSC-CCCCS
T ss_pred eeHHHHHHHHHhCCCcccccccccCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcC-CCCCc
Confidence 4455666655321 123445799999999999999999999999999999999999 58875
No 8
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=98.80 E-value=1.2e-09 Score=84.02 Aligned_cols=42 Identities=24% Similarity=0.515 Sum_probs=39.8
Q ss_pred CCCcchhhccCcHHHHHHHHHHhhccccCHHHHhcCCCCCCCC
Q psy8938 33 DINVSWEHIAGLDGTIKDLKQTVIFPIKHKEMFAKSKLTKAPK 75 (75)
Q Consensus 33 ~~~v~w~dIgGl~~~k~~L~e~v~~Pl~~p~~f~~~gl~~ppk 75 (75)
.++|+|+||||+++++++|+|.|.+|++||++|.++| ++|||
T Consensus 198 ~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g-~~~p~ 239 (806)
T 3cf2_A 198 LNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIG-VKPPR 239 (806)
T ss_dssp SSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCC-CCCCC
T ss_pred CCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcC-CCCCC
Confidence 4689999999999999999999999999999999999 69986
No 9
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.63 E-value=1.1e-08 Score=69.27 Aligned_cols=43 Identities=21% Similarity=0.481 Sum_probs=31.7
Q ss_pred CCCCcchhhccCcHHHHHHHHHHhhccccCHHHHhcCCCCCCCC
Q psy8938 32 ADINVSWEHIAGLDGTIKDLKQTVIFPIKHKEMFAKSKLTKAPK 75 (75)
Q Consensus 32 ~~~~v~w~dIgGl~~~k~~L~e~v~~Pl~~p~~f~~~gl~~ppk 75 (75)
+.|+++|+||||++++|+.|++.|.+|+.+|+.|..++ +.+|+
T Consensus 3 ~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~-l~~~~ 45 (274)
T 2x8a_A 3 TVPNVTWADIGALEDIREELTMAILAPVRNPDQFKALG-LVTPA 45 (274)
T ss_dssp ---------CCHHHHHHHHHHHHHTHHHHSHHHHHHTT-CCCCS
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcC-CCCCC
Confidence 35689999999999999999999999999999999999 47764
No 10
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.51 E-value=5.3e-08 Score=66.19 Aligned_cols=46 Identities=28% Similarity=0.540 Sum_probs=40.5
Q ss_pred cCCCCCCcchhhccCcHHHHHHHHHHhhccccCHHHHhcCCCCCCCC
Q psy8938 29 VDPADINVSWEHIAGLDGTIKDLKQTVIFPIKHKEMFAKSKLTKAPK 75 (75)
Q Consensus 29 v~p~~~~v~w~dIgGl~~~k~~L~e~v~~Pl~~p~~f~~~gl~~ppk 75 (75)
+..+.|+++|+||||++++++.|++.+.+|+.+|+.|.++| +.+|+
T Consensus 5 ~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~-~~~~~ 50 (301)
T 3cf0_A 5 TVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFG-MTPSK 50 (301)
T ss_dssp CCEECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHC-CCCCS
T ss_pred ccccCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcC-CCCCc
Confidence 34567899999999999999999999999999999999988 46653
No 11
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.46 E-value=6.3e-08 Score=66.70 Aligned_cols=42 Identities=36% Similarity=0.631 Sum_probs=36.6
Q ss_pred CCCCCcchhhccCcHHHHHHHHHHhhccccCHHHHhcCCCCCCC
Q psy8938 31 PADINVSWEHIAGLDGTIKDLKQTVIFPIKHKEMFAKSKLTKAP 74 (75)
Q Consensus 31 p~~~~v~w~dIgGl~~~k~~L~e~v~~Pl~~p~~f~~~gl~~pp 74 (75)
.+.|+++|+||||++++|+.|++.|.+|++||++|.+. ..||
T Consensus 4 ~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~--~~~~ 45 (322)
T 1xwi_A 4 IERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGK--RTPW 45 (322)
T ss_dssp EECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTT--CCCC
T ss_pred ecCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCC--CCCC
Confidence 45678999999999999999999999999999999852 3554
No 12
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.00 E-value=2.4e-06 Score=59.48 Aligned_cols=40 Identities=38% Similarity=0.728 Sum_probs=32.2
Q ss_pred ccCCCCCCcchhhccCcHHHHHHHHHHhhccccCHHHHhc
Q psy8938 28 LVDPADINVSWEHIAGLDGTIKDLKQTVIFPIKHKEMFAK 67 (75)
Q Consensus 28 ~v~p~~~~v~w~dIgGl~~~k~~L~e~v~~Pl~~p~~f~~ 67 (75)
.+..+.++++|+||+|++.+++.|++.+.+|+.+|++|.+
T Consensus 40 ~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~ 79 (355)
T 2qp9_X 40 AILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG 79 (355)
T ss_dssp -------CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS
T ss_pred hhcccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc
Confidence 3456678999999999999999999999999999999987
No 13
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.00 E-value=2.5e-06 Score=58.23 Aligned_cols=40 Identities=38% Similarity=0.745 Sum_probs=36.0
Q ss_pred cCCCCCCcchhhccCcHHHHHHHHHHhhccccCHHHHhcC
Q psy8938 29 VDPADINVSWEHIAGLDGTIKDLKQTVIFPIKHKEMFAKS 68 (75)
Q Consensus 29 v~p~~~~v~w~dIgGl~~~k~~L~e~v~~Pl~~p~~f~~~ 68 (75)
+..+.|+++|+||+|++.+++.|++.+.+|+.+|+.|...
T Consensus 8 ~~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~ 47 (322)
T 3eie_A 8 ILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGN 47 (322)
T ss_dssp SEEECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTT
T ss_pred eeecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcC
Confidence 3456789999999999999999999999999999999874
No 14
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.88 E-value=5.5e-06 Score=59.29 Aligned_cols=39 Identities=38% Similarity=0.721 Sum_probs=35.7
Q ss_pred cCCCCCCcchhhccCcHHHHHHHHHHhhccccCHHHHhc
Q psy8938 29 VDPADINVSWEHIAGLDGTIKDLKQTVIFPIKHKEMFAK 67 (75)
Q Consensus 29 v~p~~~~v~w~dIgGl~~~k~~L~e~v~~Pl~~p~~f~~ 67 (75)
+..+.|+++|+||+|++.+++.|++.+.+|+.+|++|.+
T Consensus 124 i~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~ 162 (444)
T 2zan_A 124 IVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG 162 (444)
T ss_dssp CBCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSG
T ss_pred eeccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhc
Confidence 445678999999999999999999999999999999975
No 15
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.73 E-value=2.2e-05 Score=51.90 Aligned_cols=43 Identities=33% Similarity=0.673 Sum_probs=38.4
Q ss_pred CCCCCcchhhccCcHHHHHHHHHHhhccccCHHHHhcCCCCCCC
Q psy8938 31 PADINVSWEHIAGLDGTIKDLKQTVIFPIKHKEMFAKSKLTKAP 74 (75)
Q Consensus 31 p~~~~v~w~dIgGl~~~k~~L~e~v~~Pl~~p~~f~~~gl~~pp 74 (75)
.+.++++|+||+|++.+++.|++.+.+|+.+|+.|..+| +.+|
T Consensus 9 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~ 51 (285)
T 3h4m_A 9 DERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVG-IEPP 51 (285)
T ss_dssp ESSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHC-CCCC
T ss_pred cCCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcC-CCCC
Confidence 355689999999999999999999999999999999988 4655
No 16
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.57 E-value=4.9e-05 Score=50.58 Aligned_cols=41 Identities=29% Similarity=0.525 Sum_probs=36.1
Q ss_pred cCCCCCCcchhhccCcHHHHHHHHHHhhccccCHHHHhcCC
Q psy8938 29 VDPADINVSWEHIAGLDGTIKDLKQTVIFPIKHKEMFAKSK 69 (75)
Q Consensus 29 v~p~~~~v~w~dIgGl~~~k~~L~e~v~~Pl~~p~~f~~~g 69 (75)
+..+.++++|+||+|.+.+++.|++.+.+|+.+|++|.+.+
T Consensus 11 ~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~ 51 (297)
T 3b9p_A 11 IVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR 51 (297)
T ss_dssp TBCCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGG
T ss_pred hccCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCC
Confidence 34566789999999999999999999999999999997654
No 17
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.49 E-value=3.2e-05 Score=59.18 Aligned_cols=42 Identities=21% Similarity=0.508 Sum_probs=38.0
Q ss_pred CCCcchhhccCcHHHHHHHHHHhhccccCHHHHhcCCCCCCCC
Q psy8938 33 DINVSWEHIAGLDGTIKDLKQTVIFPIKHKEMFAKSKLTKAPK 75 (75)
Q Consensus 33 ~~~v~w~dIgGl~~~k~~L~e~v~~Pl~~p~~f~~~gl~~ppk 75 (75)
.+.++|+||+|++.+++.|++.+.+|+.||++|..++ +.+|+
T Consensus 198 ~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~-i~~~~ 239 (806)
T 1ypw_A 198 LNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIG-VKPPR 239 (806)
T ss_dssp SSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSC-CCCCC
T ss_pred cCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcC-CCCCC
Confidence 3479999999999999999999999999999999998 57663
No 18
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.46 E-value=5.6e-05 Score=49.12 Aligned_cols=39 Identities=26% Similarity=0.503 Sum_probs=28.9
Q ss_pred CCcchhhccCcHHHHHHHHHHhhccccCHHHHhcCCCCCCC
Q psy8938 34 INVSWEHIAGLDGTIKDLKQTVIFPIKHKEMFAKSKLTKAP 74 (75)
Q Consensus 34 ~~v~w~dIgGl~~~k~~L~e~v~~Pl~~p~~f~~~gl~~pp 74 (75)
|+++|+||+|++++++.|++.+.+ +.+|+.|..+| +.+|
T Consensus 1 ~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~g-~~~~ 39 (262)
T 2qz4_A 1 MGVSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLG-AKVP 39 (262)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCCC-------CCCC
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHHcC-CCCC
Confidence 468999999999999999999887 89999999888 4555
No 19
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.34 E-value=0.00013 Score=53.25 Aligned_cols=41 Identities=24% Similarity=0.560 Sum_probs=36.9
Q ss_pred CCcchhhccCcHHHHHHHHHHhhccccCHHHHhcCCCCCCCC
Q psy8938 34 INVSWEHIAGLDGTIKDLKQTVIFPIKHKEMFAKSKLTKAPK 75 (75)
Q Consensus 34 ~~v~w~dIgGl~~~k~~L~e~v~~Pl~~p~~f~~~gl~~ppk 75 (75)
..++|+||+|++.+++.|++.+.+|+.+|+.|..+| +.+|+
T Consensus 199 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g-~~~~~ 239 (489)
T 3hu3_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIG-VKPPR 239 (489)
T ss_dssp TCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHT-CCCCC
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcC-CCCCC
Confidence 367899999999999999999999999999999998 46653
No 20
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.28 E-value=0.00011 Score=50.85 Aligned_cols=40 Identities=25% Similarity=0.522 Sum_probs=35.1
Q ss_pred CCCCCCcchhhccCcHHHHHHHHHHhhccccCHHHHhcCC
Q psy8938 30 DPADINVSWEHIAGLDGTIKDLKQTVIFPIKHKEMFAKSK 69 (75)
Q Consensus 30 ~p~~~~v~w~dIgGl~~~k~~L~e~v~~Pl~~p~~f~~~g 69 (75)
....+.++|+||+|++.+++.|++.+.+|+.+|+.|.+.+
T Consensus 75 ~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~ 114 (357)
T 3d8b_A 75 MDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR 114 (357)
T ss_dssp BCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG
T ss_pred ccCCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhcc
Confidence 3455689999999999999999999999999999987654
No 21
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.27 E-value=0.00011 Score=48.23 Aligned_cols=44 Identities=25% Similarity=0.434 Sum_probs=37.2
Q ss_pred cCCCCCCcchhhccCcHHHHHHHHHHhhccccCHHHHhcCCCCCCC
Q psy8938 29 VDPADINVSWEHIAGLDGTIKDLKQTVIFPIKHKEMFAKSKLTKAP 74 (75)
Q Consensus 29 v~p~~~~v~w~dIgGl~~~k~~L~e~v~~Pl~~p~~f~~~gl~~pp 74 (75)
++++.+.++|+||+|++.+++.|++.+.+ +.+|+.|..+| ..+|
T Consensus 1 i~~~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~-~~~~ 44 (268)
T 2r62_A 1 INAEKPNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLG-AKIP 44 (268)
T ss_dssp CCCCCCCCCSTTSSSCTTTHHHHHHHHHH-HHCHHHHHHHS-CCCC
T ss_pred CCccCCCCCHHHhCCcHHHHHHHHHHHHH-HHChHHHHHCC-CCCC
Confidence 35677889999999999999999998876 99999998876 3544
No 22
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.26 E-value=0.00031 Score=51.23 Aligned_cols=45 Identities=27% Similarity=0.586 Sum_probs=38.8
Q ss_pred cCCC-CCCcchhhccCcHHHHHHHHHHhhccccCHHHHhcCCCCCCCC
Q psy8938 29 VDPA-DINVSWEHIAGLDGTIKDLKQTVIFPIKHKEMFAKSKLTKAPK 75 (75)
Q Consensus 29 v~p~-~~~v~w~dIgGl~~~k~~L~e~v~~Pl~~p~~f~~~gl~~ppk 75 (75)
..++ .++++|+||+|+++++++|++.+.+ +.+|+.|..+| .++|+
T Consensus 5 ~~~~~~~~~~f~di~G~~~~~~~l~e~v~~-l~~~~~~~~~g-~~~p~ 50 (476)
T 2ce7_A 5 YKPSGNKRVTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIG-ARMPK 50 (476)
T ss_dssp CCCCCSCCCCGGGCCSCHHHHHHHHHHHHH-HHCTHHHHTTT-CCCCS
T ss_pred eccCCCCCCCHHHhCCcHHHHHHHHHHHHH-hhChHHHhhcC-CCCCC
Confidence 4455 6789999999999999999999887 88999999998 47764
No 23
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.26 E-value=0.00012 Score=47.86 Aligned_cols=43 Identities=23% Similarity=0.448 Sum_probs=32.3
Q ss_pred CCCCCcchhhccCcHHHHHHHHHHhhccccCHHHHhcCCCCCCCC
Q psy8938 31 PADINVSWEHIAGLDGTIKDLKQTVIFPIKHKEMFAKSKLTKAPK 75 (75)
Q Consensus 31 p~~~~v~w~dIgGl~~~k~~L~e~v~~Pl~~p~~f~~~gl~~ppk 75 (75)
++.+.++|+||+|++.+++.|++.+.+ +.+|+.|..+| ..+|+
T Consensus 4 ~~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~-~~~~~ 46 (257)
T 1lv7_A 4 EDQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLG-GKIPK 46 (257)
T ss_dssp ECSSCCCGGGSCSCHHHHHHTHHHHHH-HHCGGGC------CCCC
T ss_pred ccCCCCCHHHhcCcHHHHHHHHHHHHH-HhCHHHHHHcC-CCCCC
Confidence 455688999999999999999998877 89999998887 35553
No 24
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.98 E-value=0.00018 Score=55.09 Aligned_cols=42 Identities=29% Similarity=0.603 Sum_probs=37.7
Q ss_pred CCCCcchhhccCcHHHHHHHHHHhhccccCHHHHhcCCCCCCC
Q psy8938 32 ADINVSWEHIAGLDGTIKDLKQTVIFPIKHKEMFAKSKLTKAP 74 (75)
Q Consensus 32 ~~~~v~w~dIgGl~~~k~~L~e~v~~Pl~~p~~f~~~gl~~pp 74 (75)
+.++++|+||+|++++++.|++.+.+|+.+|+.|.+++ +.++
T Consensus 470 ~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~-~~~~ 511 (806)
T 1ypw_A 470 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFG-MTPS 511 (806)
T ss_dssp CCCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCC-CCCC
T ss_pred cCccccccccccchhhhhhHHHHHHhhhhchHHHHhcC-CCCC
Confidence 45689999999999999999999999999999999988 4554
No 25
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.92 E-value=0.0012 Score=43.04 Aligned_cols=44 Identities=25% Similarity=0.447 Sum_probs=36.0
Q ss_pred cCCCCCCcchhhccCcHHHHHHHHHHhhccccCHHHHhcCCCCCCC
Q psy8938 29 VDPADINVSWEHIAGLDGTIKDLKQTVIFPIKHKEMFAKSKLTKAP 74 (75)
Q Consensus 29 v~p~~~~v~w~dIgGl~~~k~~L~e~v~~Pl~~p~~f~~~gl~~pp 74 (75)
+.++.|+++|+||+|+++++.++++.+.+ +.++..|...+ +..|
T Consensus 6 ~~~~~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~~~~~~-~~~~ 49 (254)
T 1ixz_A 6 VLTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMG-ARIP 49 (254)
T ss_dssp --CCCCSCCGGGCCSCHHHHHHHHHHHHH-HHCHHHHHHTT-CCCC
T ss_pred cccCCCCCCHHHhCCcHHHHHHHHHHHHH-HHCHHHHHHcC-CCCC
Confidence 45677899999999999999999998776 78888998887 3655
No 26
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.65 E-value=0.00095 Score=46.46 Aligned_cols=39 Identities=28% Similarity=0.454 Sum_probs=35.1
Q ss_pred CCCCCcchhhccCcHHHHHHHHHHhhccccCHHHHhcCC
Q psy8938 31 PADINVSWEHIAGLDGTIKDLKQTVIFPIKHKEMFAKSK 69 (75)
Q Consensus 31 p~~~~v~w~dIgGl~~~k~~L~e~v~~Pl~~p~~f~~~g 69 (75)
...+.++|+||+|++.+++.|.+.+.+|+.+|+.|.+.+
T Consensus 107 ~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~ 145 (389)
T 3vfd_A 107 DNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLR 145 (389)
T ss_dssp CCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG
T ss_pred ccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccC
Confidence 455688999999999999999999999999999998765
No 27
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.44 E-value=0.0022 Score=46.99 Aligned_cols=40 Identities=28% Similarity=0.524 Sum_probs=35.6
Q ss_pred CCcchhhccCcHHHHHHHHHHhhccccCHHHHhcCCCCCCCC
Q psy8938 34 INVSWEHIAGLDGTIKDLKQTVIFPIKHKEMFAKSKLTKAPK 75 (75)
Q Consensus 34 ~~v~w~dIgGl~~~k~~L~e~v~~Pl~~p~~f~~~gl~~ppk 75 (75)
++++|+||+|+++++..+++.+.+ +.+|+.|..+| +++|+
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~-l~~~~~~~~lg-~~ip~ 65 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMG-ARIPK 65 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCGGGTTTTS-CCCCS
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHH-hhchhhhhhcc-CCCCc
Confidence 799999999999999999999877 88999999988 47664
No 28
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=95.94 E-value=0.011 Score=38.99 Aligned_cols=44 Identities=25% Similarity=0.447 Sum_probs=35.6
Q ss_pred cCCCCCCcchhhccCcHHHHHHHHHHhhccccCHHHHhcCCCCCCC
Q psy8938 29 VDPADINVSWEHIAGLDGTIKDLKQTVIFPIKHKEMFAKSKLTKAP 74 (75)
Q Consensus 29 v~p~~~~v~w~dIgGl~~~k~~L~e~v~~Pl~~p~~f~~~gl~~pp 74 (75)
+....++++|+||+|++++++.+++.+.+ +.++..|...+ +..|
T Consensus 30 ~~~~~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~l~~~~-~~~~ 73 (278)
T 1iy2_A 30 VLTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMG-ARIP 73 (278)
T ss_dssp CBCCCCCCCGGGSSSCHHHHHHHHHHHHH-HHCHHHHHHTT-CCCC
T ss_pred cccCCCCCCHHHhCChHHHHHHHHHHHHH-HHCHHHHHHcC-CCCC
Confidence 34555899999999999999999998765 77888888877 3554
No 29
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.65 E-value=0.0017 Score=53.59 Aligned_cols=36 Identities=11% Similarity=0.037 Sum_probs=22.4
Q ss_pred CCCCcchhhccCcHHHHHHHHHHhhccccC----------HHHHhc
Q psy8938 32 ADINVSWEHIAGLDGTIKDLKQTVIFPIKH----------KEMFAK 67 (75)
Q Consensus 32 ~~~~v~w~dIgGl~~~k~~L~e~v~~Pl~~----------p~~f~~ 67 (75)
+.+.++|+||||++++|+.+.+.+.||+.+ |+.|+.
T Consensus 1013 ~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1058 (1706)
T 3cmw_A 1013 SASGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSM 1058 (1706)
T ss_dssp -----------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGG
T ss_pred ccCCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhc
Confidence 445799999999999999999999999955 778876
No 30
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=95.33 E-value=0.0038 Score=45.45 Aligned_cols=32 Identities=19% Similarity=0.278 Sum_probs=9.6
Q ss_pred cccchHHHHHh------ccccCCCCCCcchhhccCcHH
Q psy8938 15 DSFTDHEMSIA------SHLVDPADINVSWEHIAGLDG 46 (75)
Q Consensus 15 ~~~~~~e~~ia------~~~v~p~~~~v~w~dIgGl~~ 46 (75)
++.++|+.++. ...+..+.|+|+|+||||..+
T Consensus 447 vt~edf~~Al~~~~ps~~re~~~e~p~v~W~dig~~~~ 484 (489)
T 3hu3_A 447 VTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGRSH 484 (489)
T ss_dssp BCHHHHHHHHTSHHHHHHHGGGC---------------
T ss_pred CCHHHHHHHHHhCCchhhhcccccCCCCCHHHcCCCcc
Confidence 45667777653 233556788999999999864
No 31
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=83.41 E-value=0.72 Score=30.20 Aligned_cols=31 Identities=13% Similarity=0.133 Sum_probs=25.6
Q ss_pred hhhccCcHHHHHHHHHHhhccccCHHHHhcCC
Q psy8938 38 WEHIAGLDGTIKDLKQTVIFPIKHKEMFAKSK 69 (75)
Q Consensus 38 w~dIgGl~~~k~~L~e~v~~Pl~~p~~f~~~g 69 (75)
|.||+|++.+++.|.+.+.++. .+..+.++|
T Consensus 30 ~~~i~G~~~~~~~l~~~~~~~~-~~~~~~~~g 60 (309)
T 3syl_A 30 DRELIGLKPVKDRIRETAALLL-VERARQKLG 60 (309)
T ss_dssp HHHSSSCHHHHHHHHHHHHHHH-HHHHHHHHT
T ss_pred HHHccChHHHHHHHHHHHHHHH-hHHHHHHcC
Confidence 5589999999999999998855 477776666
No 32
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=77.34 E-value=1.2 Score=32.21 Aligned_cols=31 Identities=10% Similarity=0.154 Sum_probs=27.1
Q ss_pred hhccCcHHHHHHHHHHhhccccCHHHHhcCC
Q psy8938 39 EHIAGLDGTIKDLKQTVIFPIKHKEMFAKSK 69 (75)
Q Consensus 39 ~dIgGl~~~k~~L~e~v~~Pl~~p~~f~~~g 69 (75)
++|+|++++|+.|..++..|.+++.++..++
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~ 45 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLR 45 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTT
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccc
Confidence 5899999999999999999988888776654
No 33
>3qwz_A Transitional endoplasmic reticulum ATPase; UBX, P97 binding, transport protein; HET: MLY; 2.00A {Homo sapiens} PDB: 2pjh_B
Probab=70.12 E-value=1.2 Score=29.34 Aligned_cols=11 Identities=27% Similarity=0.492 Sum_probs=1.1
Q ss_pred CCCcchhhccC
Q psy8938 33 DINVSWEHIAG 43 (75)
Q Consensus 33 ~~~v~w~dIgG 43 (75)
.+.|+|+||||
T Consensus 201 ~~~VtYeDIGG 211 (211)
T 3qwz_A 201 LNEVGYDDIGG 211 (211)
T ss_dssp CC---------
T ss_pred CCCcceeCCCC
Confidence 46899999998
No 34
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=49.35 E-value=13 Score=26.10 Aligned_cols=24 Identities=8% Similarity=-0.040 Sum_probs=20.2
Q ss_pred CCCcchhhccCcHHHHHHHHHHhh
Q psy8938 33 DINVSWEHIAGLDGTIKDLKQTVI 56 (75)
Q Consensus 33 ~~~v~w~dIgGl~~~k~~L~e~v~ 56 (75)
.+...|++|+|++.+++.+.+.+.
T Consensus 31 ~~~~~~~~iiG~~~~~~~l~~~~~ 54 (456)
T 2c9o_A 31 LAKQAASGLVGQENAREACGVIVE 54 (456)
T ss_dssp CBCSEETTEESCHHHHHHHHHHHH
T ss_pred ChhhchhhccCHHHHHHHHHHHHH
Confidence 346679999999999999988764
No 35
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=47.02 E-value=35 Score=18.85 Aligned_cols=56 Identities=9% Similarity=0.023 Sum_probs=30.5
Q ss_pred hHHHHHHhhcCc--ccccchHHH----HHhccccCCCCCCcchhh---ccC--cHHHHHHHHHHhhc
Q psy8938 2 EAERKLKTLKIN--MDSFTDHEM----SIASHLVDPADINVSWEH---IAG--LDGTIKDLKQTVIF 57 (75)
Q Consensus 2 ~~~~~~~~l~~~--~~~~~~~e~----~ia~~~v~p~~~~v~w~d---IgG--l~~~k~~L~e~v~~ 57 (75)
+|++.|++.|+. .+++++-+. ......-..+.|.|.+.| ++| .+++++.|.++..+
T Consensus 19 ~aK~~L~~~gi~y~~idi~~d~~~~~~~~~~~~G~~tVP~I~i~Dg~~l~~~~~~el~~~L~el~gL 85 (92)
T 2lqo_A 19 RLKTALTANRIAYDEVDIEHNRAAAEFVGSVNGGNRTVPTVKFADGSTLTNPSADEVKAKLVKIAGL 85 (92)
T ss_dssp HHHHHHHHTTCCCEEEETTTCHHHHHHHHHHSSSSSCSCEEEETTSCEEESCCHHHHHHHHHHHHCC
T ss_pred HHHHHHHhcCCceEEEEcCCCHHHHHHHHHHcCCCCEeCEEEEeCCEEEeCCCHHHHHHHHHHhcCC
Confidence 678889999886 233332111 122111234556666644 444 56777777776543
No 36
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=46.80 E-value=32 Score=19.82 Aligned_cols=51 Identities=14% Similarity=0.033 Sum_probs=29.2
Q ss_pred hHHHHHHhhcCc-----ccccc---hHHHHHhccccCCCCCCc--chhhccCcHHHHHHHH
Q psy8938 2 EAERKLKTLKIN-----MDSFT---DHEMSIASHLVDPADINV--SWEHIAGLDGTIKDLK 52 (75)
Q Consensus 2 ~~~~~~~~l~~~-----~~~~~---~~e~~ia~~~v~p~~~~v--~w~dIgGl~~~k~~L~ 52 (75)
+++++|++.++. ..++. +....+....-.+..|.| .-.-|||.+++.+..+
T Consensus 36 ~ak~lL~~~gv~~~~~~~~dv~~~~~~~~~l~~~sg~~tvP~vfI~g~~iGG~d~l~~l~~ 96 (121)
T 3gx8_A 36 ATIGLLGNQGVDPAKFAAYNVLEDPELREGIKEFSEWPTIPQLYVNKEFIGGCDVITSMAR 96 (121)
T ss_dssp HHHHHHHHHTBCGGGEEEEECTTCHHHHHHHHHHHTCCSSCEEEETTEEEESHHHHHHHHH
T ss_pred HHHHHHHHcCCCcceEEEEEecCCHHHHHHHHHHhCCCCCCeEEECCEEEecHHHHHHHHH
Confidence 578889998876 22332 222223221123445544 4577999999887544
No 37
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=36.35 E-value=57 Score=18.13 Aligned_cols=51 Identities=18% Similarity=0.172 Sum_probs=28.2
Q ss_pred hHHHHHHhhcCcc--cccch---HHHHHhccccCCCCCC--cchhhccCcHHHHHHHH
Q psy8938 2 EAERKLKTLKINM--DSFTD---HEMSIASHLVDPADIN--VSWEHIAGLDGTIKDLK 52 (75)
Q Consensus 2 ~~~~~~~~l~~~~--~~~~~---~e~~ia~~~v~p~~~~--v~w~dIgGl~~~k~~L~ 52 (75)
+|+++|++.++.- +++.+ ....+....-.+..|. +.-.-|||.+++.+..+
T Consensus 38 ~ak~~L~~~gi~~~~~dI~~~~~~~~~l~~~~g~~tvP~ifi~g~~iGG~d~l~~l~~ 95 (109)
T 3ipz_A 38 TVVQILKNLNVPFEDVNILENEMLRQGLKEYSNWPTFPQLYIGGEFFGGCDITLEAFK 95 (109)
T ss_dssp HHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHTCSSSCEEEETTEEEECHHHHHHHHH
T ss_pred HHHHHHHHcCCCcEEEECCCCHHHHHHHHHHHCCCCCCeEEECCEEEeCHHHHHHHHH
Confidence 5788899888752 33322 1122221111234443 34577999998886544
No 38
>2wul_A Glutaredoxin related protein 5; chromosome 14 open reading frame 87, oxidoreductase, thiored family, GLRX5, FLB4739; HET: GSH; 2.40A {Homo sapiens}
Probab=36.25 E-value=50 Score=19.33 Aligned_cols=51 Identities=14% Similarity=0.051 Sum_probs=28.9
Q ss_pred hHHHHHHhhcCc---ccccc---hHHHHHhccccCCCCCCc--chhhccCcHHHHHHHH
Q psy8938 2 EAERKLKTLKIN---MDSFT---DHEMSIASHLVDPADINV--SWEHIAGLDGTIKDLK 52 (75)
Q Consensus 2 ~~~~~~~~l~~~---~~~~~---~~e~~ia~~~v~p~~~~v--~w~dIgGl~~~k~~L~ 52 (75)
+|.++|...++. .+++. +....+....-.++.|.| .-.-|||.|++.+.-+
T Consensus 40 ~ak~lL~~~gv~~~~~~~v~~~~~~r~~l~~~sg~~TvPqIFI~g~~IGG~Ddl~~l~~ 98 (118)
T 2wul_A 40 AVVQILRLHGVRDYAAYNVLDDPELRQGIKDYSNWPTIPQVYLNGEFVGGCDILLQMHQ 98 (118)
T ss_dssp HHHHHHHHTTCCSCEEEETTSCHHHHHHHHHHHTCCSSCEEEETTEEEECHHHHHHHHH
T ss_pred HHHHHHHHhCCcCeEeecccCCHHHHHHHHHhccCCCCCeEeECCEEECCHHHHHHHHH
Confidence 578889888874 22222 222223222123555544 4478999999886444
No 39
>1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A
Probab=36.00 E-value=23 Score=18.66 Aligned_cols=12 Identities=33% Similarity=0.266 Sum_probs=9.5
Q ss_pred hHHHHHHhhcCc
Q psy8938 2 EAERKLKTLKIN 13 (75)
Q Consensus 2 ~~~~~~~~l~~~ 13 (75)
+|++.|++.++.
T Consensus 19 ~ak~~L~~~gi~ 30 (87)
T 1aba_A 19 NAKRLLTVKKQP 30 (87)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHcCCC
Confidence 578888888875
No 40
>3hym_A Anaphase-promoting complex subunit CDC26; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=35.93 E-value=14 Score=16.93 Aligned_cols=23 Identities=22% Similarity=0.505 Sum_probs=16.5
Q ss_pred CCCCCCcchhhccCcHHHHHHHH
Q psy8938 30 DPADINVSWEHIAGLDGTIKDLK 52 (75)
Q Consensus 30 ~p~~~~v~w~dIgGl~~~k~~L~ 52 (75)
.|....++-+||..+++.++++.
T Consensus 5 kPT~I~l~~eDi~e~E~~rke~e 27 (29)
T 3hym_A 5 KPTRLELKLDDIEEFENIRKDLE 27 (29)
T ss_dssp CCCCCCCCSGGGHHHHHHHHHC-
T ss_pred CCcEEEecHHHHHHHHHHHHHHh
Confidence 36666778888888888887653
No 41
>3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str}
Probab=33.52 E-value=14 Score=23.80 Aligned_cols=52 Identities=15% Similarity=0.082 Sum_probs=39.2
Q ss_pred cccchHHHHHhccccCCCCCCcchhhccCcHHHHHHHHHHhhccccCHHHHhcCC
Q psy8938 15 DSFTDHEMSIASHLVDPADINVSWEHIAGLDGTIKDLKQTVIFPIKHKEMFAKSK 69 (75)
Q Consensus 15 ~~~~~~e~~ia~~~v~p~~~~v~w~dIgGl~~~k~~L~e~v~~Pl~~p~~f~~~g 69 (75)
-+..++|.++.+. .+..-+-..||+-++++.+.+++.-..++-|+++..+++
T Consensus 17 r~~~~l~~al~s~---~~~ifll~g~i~~l~~~v~~lk~~~K~v~Vh~Dli~Gls 68 (192)
T 3kts_A 17 HNQKDMEKILELD---LTYMVMLETHVAQLKALVKYAQAGGKKVLLHADLVNGLK 68 (192)
T ss_dssp SSSHHHHHHTTSS---CCEEEECSEETTTHHHHHHHHHHTTCEEEEEGGGEETCC
T ss_pred cCHHHHHHHHcCC---CCEEEEecCcHHHHHHHHHHHHHcCCeEEEecCchhccC
Confidence 3566677766543 233344568999999999999999999999999877654
No 42
>3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A*
Probab=31.25 E-value=56 Score=16.57 Aligned_cols=53 Identities=13% Similarity=0.065 Sum_probs=28.2
Q ss_pred hHHHHHHhhcCc--ccccchHHH-----HHhccccC-----CCCCCc--chhhccCcHHHHHHHHHH
Q psy8938 2 EAERKLKTLKIN--MDSFTDHEM-----SIASHLVD-----PADINV--SWEHIAGLDGTIKDLKQT 54 (75)
Q Consensus 2 ~~~~~~~~l~~~--~~~~~~~e~-----~ia~~~v~-----p~~~~v--~w~dIgGl~~~k~~L~e~ 54 (75)
+++..|+.+++. ..+++..+. .+....-. ...|.+ .-.-|||.+++.+.+++.
T Consensus 19 ~~~~~L~~~~i~~~~~~vd~~~~~~~~~el~~~~g~~~~~~~~vP~i~i~g~~i~g~~~i~~~~~~~ 85 (89)
T 3msz_A 19 WAKQWFEENNIAFDETIIDDYAQRSKFYDEMNQSGKVIFPISTVPQIFIDDEHIGGFTELKANADKI 85 (89)
T ss_dssp HHHHHHHHTTCCCEEEECCSHHHHHHHHHHHHTTTCCSSCCCSSCEEEETTEEEESHHHHHHTHHHH
T ss_pred HHHHHHHHcCCCceEEEeecCCChhHHHHHHHHhCCCCCCCCccCEEEECCEEEeChHHHHHHHHHH
Confidence 567788888864 222222111 12211111 334433 335689999998877764
No 43
>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.66 E-value=60 Score=18.14 Aligned_cols=50 Identities=14% Similarity=0.062 Sum_probs=26.8
Q ss_pred hHHHHHHhhcCc--ccccch---HHHHHhccc--------cCCCCCCcc--hhhccCcHHHHHHH
Q psy8938 2 EAERKLKTLKIN--MDSFTD---HEMSIASHL--------VDPADINVS--WEHIAGLDGTIKDL 51 (75)
Q Consensus 2 ~~~~~~~~l~~~--~~~~~~---~e~~ia~~~--------v~p~~~~v~--w~dIgGl~~~k~~L 51 (75)
+|+++|+..++. .+|+.. ....+.... -.+..|.|. -.-|||.+++.+..
T Consensus 29 ~ak~~L~~~gi~y~~vdI~~~~~~~~~l~~~~~~~~~~~~g~~tvP~vfi~g~~iGG~d~l~~l~ 93 (111)
T 2ct6_A 29 DVVRFLEANKIEFEEVDITMSEEQRQWMYKNVPPEKKPTQGNPLPPQIFNGDRYCGDYDSFFESK 93 (111)
T ss_dssp HHHHHHHHTTCCEEEEETTTCHHHHHHHHHSCCTTTCCSSSSCCSCEEEETTEEEEEHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhcccccccCCCCCCCEEEECCEEEeCHHHHHHHH
Confidence 578888888876 233322 112222221 123445442 35699999877543
No 44
>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} SCOP: c.47.1.0
Probab=26.90 E-value=87 Score=17.34 Aligned_cols=51 Identities=12% Similarity=0.190 Sum_probs=28.7
Q ss_pred hHHHHHHhhcCc--ccccch------HHHHHhccccCCCCCCc--chhhccCcHHHHHHHH
Q psy8938 2 EAERKLKTLKIN--MDSFTD------HEMSIASHLVDPADINV--SWEHIAGLDGTIKDLK 52 (75)
Q Consensus 2 ~~~~~~~~l~~~--~~~~~~------~e~~ia~~~v~p~~~~v--~w~dIgGl~~~k~~L~ 52 (75)
+++..|+++++. .++++. ....++...-.++.|.+ .-.-|||.+++.+.-+
T Consensus 32 ~ak~~L~~~~i~~~~~dvd~~~~~~~~~~~l~~~~g~~tvP~vfi~g~~igG~d~l~~l~~ 92 (114)
T 3h8q_A 32 RVKELFSSLGVECNVLELDQVDDGARVQEVLSEITNQKTVPNIFVNKVHVGGCDQTFQAYQ 92 (114)
T ss_dssp HHHHHHHHTTCCCEEEETTTSTTHHHHHHHHHHHHSCCSSCEEEETTEEEESHHHHHHHHH
T ss_pred HHHHHHHHcCCCcEEEEecCCCChHHHHHHHHHHhCCCccCEEEECCEEEeCHHHHHHHHH
Confidence 578888988875 233331 11223222123455544 3467999998886544
No 45
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame 87, Fe/S cluster, oxidoreductase, thioredoxin family, GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens} PDB: 2wul_A*
Probab=25.89 E-value=99 Score=17.67 Aligned_cols=51 Identities=14% Similarity=0.053 Sum_probs=28.5
Q ss_pred hHHHHHHhhcCc---ccccch---HHHHHhccccCCCCCC--cchhhccCcHHHHHHHH
Q psy8938 2 EAERKLKTLKIN---MDSFTD---HEMSIASHLVDPADIN--VSWEHIAGLDGTIKDLK 52 (75)
Q Consensus 2 ~~~~~~~~l~~~---~~~~~~---~e~~ia~~~v~p~~~~--v~w~dIgGl~~~k~~L~ 52 (75)
+++++|+++++. .+++.+ ....+....-.+..|. |.-.-|||.+++.+..+
T Consensus 40 ~ak~lL~~~gv~~~~~vdV~~d~~~~~~l~~~tg~~tvP~vfI~g~~IGG~d~l~~l~~ 98 (118)
T 2wem_A 40 AVVQILRLHGVRDYAAYNVLDDPELRQGIKDYSNWPTIPQVYLNGEFVGGCDILLQMHQ 98 (118)
T ss_dssp HHHHHHHHTTCCCCEEEESSSCHHHHHHHHHHHTCCSSCEEEETTEEEESHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCEEEEcCCCHHHHHHHHHHhCCCCcCeEEECCEEEeChHHHHHHHH
Confidence 578899999884 233322 1122221111344453 34577999998886444
No 46
>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A
Probab=25.60 E-value=81 Score=18.60 Aligned_cols=12 Identities=25% Similarity=0.171 Sum_probs=9.7
Q ss_pred hHHHHHHhhcCc
Q psy8938 2 EAERKLKTLKIN 13 (75)
Q Consensus 2 ~~~~~~~~l~~~ 13 (75)
+|+++|++.++.
T Consensus 21 ~aK~lL~~kgV~ 32 (121)
T 1u6t_A 21 DVLGFLEANKIG 32 (121)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHCCCc
Confidence 578888888876
No 47
>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A
Probab=23.97 E-value=90 Score=16.50 Aligned_cols=51 Identities=8% Similarity=0.074 Sum_probs=26.6
Q ss_pred hHHHHHHhhcCc--ccccch---HHHHHhcccc--CCCCCCc--chhhccCcHHHHHHHH
Q psy8938 2 EAERKLKTLKIN--MDSFTD---HEMSIASHLV--DPADINV--SWEHIAGLDGTIKDLK 52 (75)
Q Consensus 2 ~~~~~~~~l~~~--~~~~~~---~e~~ia~~~v--~p~~~~v--~w~dIgGl~~~k~~L~ 52 (75)
+|+++|+..++. .+|++. ....+....- ....|.| .-.-|||.+++.+..+
T Consensus 23 ~ak~~L~~~~i~~~~~di~~~~~~~~~l~~~~g~~~~~vP~ifi~g~~igG~d~l~~l~~ 82 (93)
T 1t1v_A 23 EVTRILDGKRIQYQLVDISQDNALRDEMRTLAGNPKATPPQIVNGNHYCGDYELFVEAVE 82 (93)
T ss_dssp HHHHHHHHTTCCCEEEETTSCHHHHHHHHHHTTCTTCCSCEEEETTEEEEEHHHHHHHHH
T ss_pred HHHHHHHHCCCceEEEECCCCHHHHHHHHHHhCCCCCCCCEEEECCEEEeCHHHHHHHHh
Confidence 577888888875 233321 1111221111 1244433 3356999998886544
No 48
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=23.85 E-value=97 Score=17.31 Aligned_cols=51 Identities=20% Similarity=0.027 Sum_probs=28.1
Q ss_pred hHHHHHHhhcCc--ccccch---HHHHHhccccCCCCCC--cchhhccCcHHHHHHHH
Q psy8938 2 EAERKLKTLKIN--MDSFTD---HEMSIASHLVDPADIN--VSWEHIAGLDGTIKDLK 52 (75)
Q Consensus 2 ~~~~~~~~l~~~--~~~~~~---~e~~ia~~~v~p~~~~--v~w~dIgGl~~~k~~L~ 52 (75)
+|++.|++.++. ..++.+ ....+....-.+..|. +.-.-|||.+++.+..+
T Consensus 36 ~ak~~L~~~gi~y~~~di~~d~~~~~~l~~~~g~~tvP~ifi~g~~iGG~d~l~~l~~ 93 (111)
T 3zyw_A 36 QMVEILHKHNIQFSSFDIFSDEEVRQGLKAYSSWPTYPQLYVSGELIGGLDIIKELEA 93 (111)
T ss_dssp HHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHTCCSSCEEEETTEEEECHHHHHHHHH
T ss_pred HHHHHHHHcCCCeEEEECcCCHHHHHHHHHHHCCCCCCEEEECCEEEecHHHHHHHHH
Confidence 578889988875 233332 1122211111244453 34577999998886554
No 49
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=22.21 E-value=62 Score=21.06 Aligned_cols=22 Identities=14% Similarity=0.252 Sum_probs=19.5
Q ss_pred chhhccCcHHHHHHHHHHhhcc
Q psy8938 37 SWEHIAGLDGTIKDLKQTVIFP 58 (75)
Q Consensus 37 ~w~dIgGl~~~k~~L~e~v~~P 58 (75)
+|+|+.|.+.+++.+.+.+...
T Consensus 27 ~~~~iiG~~~~~~~l~~~l~~~ 48 (338)
T 3pfi_A 27 NFDGYIGQESIKKNLNVFIAAA 48 (338)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHH
T ss_pred CHHHhCChHHHHHHHHHHHHHH
Confidence 6999999999999999987654
No 50
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=21.21 E-value=87 Score=20.25 Aligned_cols=26 Identities=19% Similarity=0.185 Sum_probs=19.7
Q ss_pred CCCcchhhccCcHHHHHHHHHHhhcc
Q psy8938 33 DINVSWEHIAGLDGTIKDLKQTVIFP 58 (75)
Q Consensus 33 ~~~v~w~dIgGl~~~k~~L~e~v~~P 58 (75)
.+..+|++|.|.+.+++.+......+
T Consensus 18 ~~~~~f~~i~G~~~~~~~l~~~~~~~ 43 (350)
T 1g8p_A 18 RPVFPFSAIVGQEDMKLALLLTAVDP 43 (350)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHCG
T ss_pred CCCCCchhccChHHHHHHHHHHhhCC
Confidence 34678999999999988876655443
No 51
>3ctg_A Glutaredoxin-2; reduced form, electron transport, mitochondrion, redox-activ transit peptide, transport, oxidoreductase; 1.50A {Saccharomyces cerevisiae} PDB: 3ctf_A 3d4m_A 3d5j_A*
Probab=20.36 E-value=89 Score=17.96 Aligned_cols=51 Identities=14% Similarity=0.048 Sum_probs=26.5
Q ss_pred hH-HHHHHhhc---Cc--ccccch------HHHHHhccccCCCCCCcc--hhhccCcHHHHHHHH
Q psy8938 2 EA-ERKLKTLK---IN--MDSFTD------HEMSIASHLVDPADINVS--WEHIAGLDGTIKDLK 52 (75)
Q Consensus 2 ~~-~~~~~~l~---~~--~~~~~~------~e~~ia~~~v~p~~~~v~--w~dIgGl~~~k~~L~ 52 (75)
++ +..|+.++ +. .++++. ....++...-.+..|.+. -.-|||.+++.+..+
T Consensus 52 ~a~k~~L~~~~~~~i~~~~vdvd~~~~~~~~~~~L~~~~g~~tVP~vfi~g~~igG~d~l~~l~~ 116 (129)
T 3ctg_A 52 ATLSTLFQELNVPKSKALVLELDEMSNGSEIQDALEEISGQKTVPNVYINGKHIGGNSDLETLKK 116 (129)
T ss_dssp HHHHHHHTTSCCCGGGEEEEEGGGSTTHHHHHHHHHHHHSCCSSCEEEETTEEEESHHHHHHHHH
T ss_pred HHHHHHHHhcCccCCCcEEEEccccCCHHHHHHHHHHHhCCCCCCEEEECCEEEcCHHHHHHHHH
Confidence 45 67777777 43 223322 122333322234555443 356999998875433
Done!