RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8938
         (75 letters)



>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97
          {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 265

 Score = 42.1 bits (98), Expect = 8e-07
 Identities = 12/36 (33%), Positives = 23/36 (63%)

Query: 35 NVSWEHIAGLDGTIKDLKQTVIFPIKHKEMFAKSKL 70
           V+WE I GL+   ++L++ V +P++H + F K  +
Sbjct: 3  QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGM 38


>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97
          {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 258

 Score = 41.5 bits (96), Expect = 1e-06
 Identities = 7/32 (21%), Positives = 16/32 (50%)

Query: 36 VSWEHIAGLDGTIKDLKQTVIFPIKHKEMFAK 67
          V ++ + G    +  +K+ V  P++H  +F  
Sbjct: 1  VGYDDVGGCRKQLAQIKEMVELPLRHPALFKA 32


>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
          {Escherichia coli [TaxId: 562]}
          Length = 256

 Score = 38.7 bits (90), Expect = 1e-05
 Identities = 10/48 (20%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 28 LVDPADINVSWEHIAGLDGTIKDLKQTVIFPIKHKEMFAKSKLTKAPK 75
          ++    I  ++  +AG D   +++ + V + ++    F K    K PK
Sbjct: 1  MLTEDQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGG-KIPK 46


>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
          {Thermus thermophilus [TaxId: 274]}
          Length = 247

 Score = 36.4 bits (84), Expect = 9e-05
 Identities = 11/41 (26%), Positives = 23/41 (56%), Gaps = 2/41 (4%)

Query: 35 NVSWEHIAGLDGTIKDLKQTVIFPIKHKEMFAKSKLTKAPK 75
           V+++ +AG +   ++LK+ V F +K+   F +    + PK
Sbjct: 5  KVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGA-RIPK 43


>d1pvna1 c.1.5.1 (A:2-99,A:231-494) Inosine monophosphate
          dehydrogenase (IMPDH) {Tritrichomonas foetus [TaxId:
          5724]}
          Length = 362

 Score = 23.6 bits (50), Expect = 3.3
 Identities = 5/13 (38%), Positives = 8/13 (61%)

Query: 13 NMDSFTDHEMSIA 25
           M S +  +M+IA
Sbjct: 57 IMQSVSGEKMAIA 69


>d2cu0a1 c.1.5.1 (A:3-96,A:207-480) Inosine monophosphate
          dehydrogenase (IMPDH) {Pyrococcus horikoshii [TaxId:
          53953]}
          Length = 368

 Score = 23.2 bits (49), Expect = 5.0
 Identities = 6/13 (46%), Positives = 10/13 (76%)

Query: 13 NMDSFTDHEMSIA 25
           MD+ T+ EM++A
Sbjct: 52 AMDTVTEWEMAVA 64


>d1zfja1 c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate
          dehydrogenase (IMPDH) {Streptococcus pyogenes [TaxId:
          1314]}
          Length = 365

 Score = 23.1 bits (49), Expect = 5.2
 Identities = 6/13 (46%), Positives = 9/13 (69%)

Query: 13 NMDSFTDHEMSIA 25
           MD+ T  +M+IA
Sbjct: 51 AMDTVTGSKMAIA 63


>d1eepa_ c.1.5.1 (A:) Inosine monophosphate dehydrogenase (IMPDH)
          {Lyme disease spirochete (Borrelia burgdorferi) [TaxId:
          139]}
          Length = 388

 Score = 22.8 bits (48), Expect = 5.6
 Identities = 6/13 (46%), Positives = 10/13 (76%)

Query: 13 NMDSFTDHEMSIA 25
           MD+ T+ +M+IA
Sbjct: 47 AMDTVTESQMAIA 59


>d1igtb4 b.1.1.2 (B:363-474) Immunoglobulin heavy chain gamma
          constant domain 3, CH3-gamma {Mouse (Mus musculus),
          gamma2 [TaxId: 10090]}
          Length = 102

 Score = 22.2 bits (47), Expect = 8.0
 Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 5/59 (8%)

Query: 15 DSFTDHEMSIASHLVD--PADINVSWEHIAGLDGTIKDLKQTVIFPIKHKEMFAKSKLT 71
          +  T  ++++   + D  P DI V W +      T  + K T          F  SKL 
Sbjct: 15 EEMTKKQVTLTCMVTDFMPEDIYVEWTNN---GKTELNYKNTEPVLDSDGSYFMYSKLR 70


>d1jk0b_ a.25.1.2 (B:) Ribonucleotide reductase R2 {Baker's yeast
          (Saccharomyces cerevisiae), Y4 [TaxId: 4932]}
          Length = 285

 Score = 22.1 bits (46), Expect = 9.8
 Identities = 9/19 (47%), Positives = 14/19 (73%)

Query: 55 VIFPIKHKEMFAKSKLTKA 73
          V+FPIK+ E++A  K  +A
Sbjct: 26 VMFPIKYHEIWAAYKKVEA 44


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.130    0.369 

Gapped
Lambda     K      H
   0.267   0.0509    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 261,414
Number of extensions: 9616
Number of successful extensions: 39
Number of sequences better than 10.0: 1
Number of HSP's gapped: 39
Number of HSP's successfully gapped: 15
Length of query: 75
Length of database: 2,407,596
Length adjustment: 42
Effective length of query: 33
Effective length of database: 1,830,936
Effective search space: 60420888
Effective search space used: 60420888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.4 bits)