BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8942
(340 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WT9|A Chain A, Acinetobacter Baumanii Nicotinamidase Pyrazinamidease
pdb|2WT9|B Chain B, Acinetobacter Baumanii Nicotinamidase Pyrazinamidease
Length = 235
Score = 123 bits (308), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 74/210 (35%), Positives = 112/210 (53%), Gaps = 24/210 (11%)
Query: 29 IKVIVRPK-SALLVINVQNDFVSGTLNMSQRSAKQNGLQVIEPINKLLDTVNFNAVFYSL 87
+K+ +P+ SAL+V++VQN F G N++ A +I IN+L F V +
Sbjct: 22 MKMNKQPQNSALVVVDVQNGFTPGG-NLAVADADT----IIPTINQLAGC--FENVVLTQ 74
Query: 88 DWHPSNHISFIDNIKLRKIHYTSTVQPEDAQTYDTVVFDGDTPMKQKLWPRHCVQDSWGA 147
DWHP NHISF N + Q ++T+ D + Q LWP+HC+Q + A
Sbjct: 75 DWHPDNHISFAANHPGK-------------QPFETIELDYGS---QVLWPKHCIQGTHDA 118
Query: 148 ELHKDLKIVDNAIKVYMGTDPEEDSYSVFWDSKKLKRTSLAKQLEAKKVTDVYVCGLAYD 207
E H DL I + + G DSYS F ++ T L L+ + + VYV G+A D
Sbjct: 119 EFHPDLNIPTAQLIIRKGFHAHIDSYSAFMEADHTTMTGLTGYLKERGIDTVYVVGIATD 178
Query: 208 VCVGASAIDAITIGYRTILIEDCCRGMDLD 237
CV +A+DA+ G++T++IED C+G+DL+
Sbjct: 179 FCVAWTALDAVKQGFKTLVIEDACKGIDLN 208
>pdb|2WTA|A Chain A, Acinetobacter Baumanii Nicotinamidase Pyrazinamidease
Length = 213
Score = 118 bits (295), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 72/202 (35%), Positives = 106/202 (52%), Gaps = 24/202 (11%)
Query: 37 SALLVINVQNDFVSGTLNMSQRSAKQNGLQVIEPINKLLDTVNFNAVFYSLDWHPSNHIS 96
SAL+V++VQN F G N++ A +I IN+L F V + DWHP NHIS
Sbjct: 8 SALVVVDVQNGFTPGG-NLAVADADT----IIPTINQLAGC--FENVVLTQDWHPDNHIS 60
Query: 97 FIDNIKLRKIHYTSTVQPEDAQTYDTVVFDGDTPMKQKLWPRHCVQDSWGAELHKDLKIV 156
F N + Q ++T+ D + Q LWP+HC+Q + AE H DL I
Sbjct: 61 FAANHPGK-------------QPFETIELDYGS---QVLWPKHCIQGTHDAEFHPDLNIP 104
Query: 157 DNAIKVYMGTDPEEDSYSVFWDSKKLKRTSLAKQLEAKKVTDVYVCGLAYDVC-VGASAI 215
+ + G DSYS F ++ T L L+ + + VYV G+A D C V +A+
Sbjct: 105 TAQLIIRKGFHAHIDSYSAFMEADHTTMTGLTGYLKERGIDTVYVVGIATDFCXVAWTAL 164
Query: 216 DAITIGYRTILIEDCCRGMDLD 237
DA+ G++T++IED C+G+DL+
Sbjct: 165 DAVKQGFKTLVIEDACKGIDLN 186
>pdb|2H0R|A Chain A, Structure Of The Yeast Nicotinamidase Pnc1p
pdb|2H0R|B Chain B, Structure Of The Yeast Nicotinamidase Pnc1p
pdb|2H0R|C Chain C, Structure Of The Yeast Nicotinamidase Pnc1p
pdb|2H0R|D Chain D, Structure Of The Yeast Nicotinamidase Pnc1p
pdb|2H0R|E Chain E, Structure Of The Yeast Nicotinamidase Pnc1p
pdb|2H0R|F Chain F, Structure Of The Yeast Nicotinamidase Pnc1p
pdb|2H0R|G Chain G, Structure Of The Yeast Nicotinamidase Pnc1p
Length = 216
Score = 105 bits (261), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 66/207 (31%), Positives = 111/207 (53%), Gaps = 21/207 (10%)
Query: 38 ALLVINVQNDFVS--GTLNMSQRSAKQNGLQVIEPINKLLDTVN--FNAVFYSLDWHPSN 93
L+V+++QNDF+S G+L + + G ++I PI+ L+ + ++ + + DWHPS
Sbjct: 3 TLIVVDMQNDFISPLGSLTVPK------GEELINPISDLMQDADRDWHRIVVTRDWHPSR 56
Query: 94 HISFIDNIKLRKIHYTSTVQPEDAQTYDTVVFDGDTPMKQKLWPRHCVQDSWGAELHKDL 153
HISF N K + +P TY + D+ + LWP HCV+++WG++L +
Sbjct: 57 HISFAKNHKDK--------EPYSTYTYHSPRPGDDSTQEGILWPVHCVKNTWGSQLVDQI 108
Query: 154 --KIVDNAIKVY-MGTDPEEDSYSVFWDSKKLKRTSLAKQLEAKKVTDVYVCGLAYDVCV 210
++V IK+ G + + YS F D +T + K LE +VY+ G+A + CV
Sbjct: 109 MDQVVTKHIKIVDKGFLTDREYYSAFHDIWNFHKTDMNKYLEKHHTDEVYIVGVALEYCV 168
Query: 211 GASAIDAITIGYRTILIEDCCRGMDLD 237
A+AI A +GY+T ++ D R + D
Sbjct: 169 KATAISAAELGYKTTVLLDYTRPISDD 195
>pdb|3V8E|A Chain A, Crystal Structure Of The Yeast Nicotinamidase Pnc1p Bound
To The Inhibitor Nicotinaldehyde
pdb|3V8E|B Chain B, Crystal Structure Of The Yeast Nicotinamidase Pnc1p Bound
To The Inhibitor Nicotinaldehyde
pdb|3V8E|C Chain C, Crystal Structure Of The Yeast Nicotinamidase Pnc1p Bound
To The Inhibitor Nicotinaldehyde
pdb|3V8E|D Chain D, Crystal Structure Of The Yeast Nicotinamidase Pnc1p Bound
To The Inhibitor Nicotinaldehyde
pdb|3V8E|E Chain E, Crystal Structure Of The Yeast Nicotinamidase Pnc1p Bound
To The Inhibitor Nicotinaldehyde
pdb|3V8E|F Chain F, Crystal Structure Of The Yeast Nicotinamidase Pnc1p Bound
To The Inhibitor Nicotinaldehyde
pdb|3V8E|G Chain G, Crystal Structure Of The Yeast Nicotinamidase Pnc1p Bound
To The Inhibitor Nicotinaldehyde
Length = 216
Score = 101 bits (251), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 65/207 (31%), Positives = 110/207 (53%), Gaps = 21/207 (10%)
Query: 38 ALLVINVQNDFVS--GTLNMSQRSAKQNGLQVIEPINKLLDTVN--FNAVFYSLDWHPSN 93
L+V+++QNDF+S G+L + + G ++I PI+ L+ + ++ + + DWHPS
Sbjct: 3 TLIVVDMQNDFISPLGSLTVPK------GEELINPISDLMQDADRDWHRIVVTRDWHPSR 56
Query: 94 HISFIDNIKLRKIHYTSTVQPEDAQTYDTVVFDGDTPMKQKLWPRHCVQDSWGAELHKDL 153
HISF N K + +P TY + D+ + LWP HCV+++WG++L +
Sbjct: 57 HISFAKNHKDK--------EPYSTYTYHSPRPGDDSTQEGILWPVHCVKNTWGSQLVDQI 108
Query: 154 --KIVDNAIKVY-MGTDPEEDSYSVFWDSKKLKRTSLAKQLEAKKVTDVYVCGLAYDVCV 210
++V IK+ G + + YS F D +T + K LE +VY+ G+A + V
Sbjct: 109 MDQVVTKHIKIVDKGFLTDREYYSAFHDIWNFHKTDMNKYLEKHHTDEVYIVGVALEYXV 168
Query: 211 GASAIDAITIGYRTILIEDCCRGMDLD 237
A+AI A +GY+T ++ D R + D
Sbjct: 169 KATAISAAELGYKTTVLLDYTRPISDD 195
>pdb|1IM5|A Chain A, Crystal Structure Of Pyrazinamidase Of Pyrococcus
Horikoshii In Complex With Zinc
pdb|1ILW|A Chain A, Crystal Structure Of PyrazinamidaseNICOTINAMIDASE OF
Pyrococcus Horikoshii
Length = 180
Score = 101 bits (251), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 63/211 (29%), Positives = 103/211 (48%), Gaps = 49/211 (23%)
Query: 35 PKSALLVINVQNDFV-SGTLNMSQRSAKQNGLQVIEPINKLLDTVNFNA--VFYSLDWHP 91
P+ AL+V+++Q DF+ G L + + G ++I +N+ + + + DWHP
Sbjct: 2 PEEALIVVDMQRDFMPGGALPVPE------GDKIIPKVNEYIRKFKEKGALIVATRDWHP 55
Query: 92 SNHISFIDNIKLRKIHYTSTVQPEDAQTYDTVVFDGDTPMKQKLWPRHCVQDSWGAELHK 151
NHISF + + WPRHCVQ++ GAE
Sbjct: 56 ENHISFRE--------------------------------RGGPWPRHCVQNTPGAEFVV 83
Query: 152 DLKIVDNAIKVYMGTDPEEDSYSVFWDSKKLKRTSLAKQLEAKKVTDVYVCGLAYDVCVG 211
DL ++A+ + T+P++++YS F + T LAK L V VY+CG+A + CV
Sbjct: 84 DLP--EDAVIISKATEPDKEAYSGF------EGTDLAKILRGNGVKRVYICGVATEYCVR 135
Query: 212 ASAIDAITIGYRTILIEDCCRGMDLDDIERT 242
A+A+DA+ G+ L+ D +G+ +D ER
Sbjct: 136 ATALDALKHGFEVYLLRDAVKGIKPEDEERA 166
>pdb|3R2J|A Chain A, Crystal Structure Of Pnc1 From L. Infantum In Complex With
Nicotinate
pdb|3R2J|B Chain B, Crystal Structure Of Pnc1 From L. Infantum In Complex With
Nicotinate
pdb|3R2J|C Chain C, Crystal Structure Of Pnc1 From L. Infantum In Complex With
Nicotinate
pdb|3R2J|D Chain D, Crystal Structure Of Pnc1 From L. Infantum In Complex With
Nicotinate
Length = 227
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 95/215 (44%), Gaps = 42/215 (19%)
Query: 39 LLVINVQNDFVS--GTLNMSQRSAKQNGLQVIEPINKLLDTVNFNAVFYSLDWHPSNHIS 96
L++ ++Q DF++ G+L++ + G +++ IN + + F + DWHP NH S
Sbjct: 37 LIIADMQVDFLAPGGSLHV------KGGEALLDGINAVSSQLPFRYQVATQDWHPENHCS 90
Query: 97 FIDNIKLRKIHYTSTVQPEDAQTYDTVVFDGDTPMKQKLWPRHCVQDSWGAELHKDLKIV 156
F+ + WP HCVQ S GA+LH L
Sbjct: 91 FVTH--------------------------------GGPWPPHCVQGSAGAQLHAGLHTQ 118
Query: 157 DNAIKVYMGTDPEEDSYSVFWDSKKLKRTSLAKQLEAKKVTDVYVCGLAYDVCVGASAID 216
+ G + DSYS F + + T LA L + V+VCG+AYD CV +A+D
Sbjct: 119 RINAVIRKGVTQQADSYSAFVEDNGVS-TGLAGLLHSIGARRVFVCGVAYDFCVFFTAMD 177
Query: 217 AITIGYRTILIEDCCRGMDLDDIERTRNTILENYG 251
A G+ +L+ED +D D R L++ G
Sbjct: 178 ARKNGFSVVLLEDLTAAVD-DAAWSARTAELKDAG 211
>pdb|3PL1|A Chain A, Determination Of The Crystal Structure Of The
Pyrazinamidase From M.Tuberculosis : A
Structure-Function Analysis For Prediction Resistance To
Pyrazinamide
Length = 186
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 88/218 (40%), Gaps = 46/218 (21%)
Query: 38 ALLVINVQNDFV-SGTLNMSQRSAKQNGLQVIEPINKLLDTVNFNAVFYSLDWH--PSNH 94
AL++++VQNDF G+L ++ +A + + L + +++ V + D+H P +H
Sbjct: 3 ALIIVDVQNDFCEGGSLAVTGGAALARAIS-----DYLAEAADYHHVVATKDFHIDPGDH 57
Query: 95 ISFIDNIKLRKIHYTSTVQPEDAQTYDTVVFDGDTPMKQKLWPRHCVQDSWGAELHKDLK 154
S TP WP HCV + GA+ H L
Sbjct: 58 FS-------------------------------GTPDYSSSWPPHCVSGTPGADFHPSLD 86
Query: 155 IVDNAIKVYMGTDPEEDSYSVFWDSKKLKRTSLAKQLEAKKVTDVYVCGLAYDVCVGASA 214
+AI+ +YS F + T L L + V +V V G+A D CV +A
Sbjct: 87 T--SAIEAVFYKGAYTGAYSGF-EGVDENGTPLLNWLRQRGVDEVDVVGIATDHCVRQTA 143
Query: 215 IDAITIGYRTILIEDCCRGMDLDD----IERTRNTILE 248
DA+ G T ++ D G+ D +E R +E
Sbjct: 144 EDAVRNGLATRVLVDLTAGVSADTTVAALEEMRTASVE 181
>pdb|3O90|A Chain A, High Resolution Crystal Structures Of Streptococcus
Pneumoniae Nicotinamidase With Trapped Intermediates
Provide Insights Into Catalytic Mechanism And Inhibition
By Aldehydes
pdb|3O90|B Chain B, High Resolution Crystal Structures Of Streptococcus
Pneumoniae Nicotinamidase With Trapped Intermediates
Provide Insights Into Catalytic Mechanism And Inhibition
By Aldehydes
pdb|3O90|C Chain C, High Resolution Crystal Structures Of Streptococcus
Pneumoniae Nicotinamidase With Trapped Intermediates
Provide Insights Into Catalytic Mechanism And Inhibition
By Aldehydes
pdb|3O90|D Chain D, High Resolution Crystal Structures Of Streptococcus
Pneumoniae Nicotinamidase With Trapped Intermediates
Provide Insights Into Catalytic Mechanism And Inhibition
By Aldehydes
Length = 211
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 74/189 (39%), Gaps = 47/189 (24%)
Query: 38 ALLVINVQNDFVSGTLNMSQRSAKQNGLQVIEPINKLLDTVNFNAVFYSLDWHPSNHISF 97
AL+ I+ DFV+ + ++ + Q I + +L + +F+++D H N
Sbjct: 24 ALISIDYTEDFVADSGKLTAGAPAQAISDAISKVTRLAFERG-DYIFFTIDAHEEN---- 78
Query: 98 IDNIKLRKIHYTSTVQPEDAQTYDTVVFDGDTPMKQKLWPRHCVQDSWGAELHKDLKIVD 157
PE KL+P H + + G L+ DL I
Sbjct: 79 ------------DCFHPE-----------------SKLFPPHNLIGTSGRNLYGDLGIFY 109
Query: 158 NAIKVYMGTDPEEDSYSVFWDSKK----LKRTSLAKQLEAKKVTDVYVCGLAYDVCVGAS 213
G+D VFW K+ T L +L ++V+ V + G+ D+CV +
Sbjct: 110 QE----HGSDSR-----VFWMDKRHYSAFSGTDLDIRLRERRVSTVILTGVLTDICVLHT 160
Query: 214 AIDAITIGY 222
AIDA +GY
Sbjct: 161 AIDAYNLGY 169
>pdb|3EEF|A Chain A, Crystal Structure Of N-Carbamoylsarcosine Amidase From
Thermoplasma Acidophilum
pdb|3EEF|B Chain B, Crystal Structure Of N-Carbamoylsarcosine Amidase From
Thermoplasma Acidophilum
Length = 182
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 78/198 (39%), Gaps = 56/198 (28%)
Query: 36 KSALLVINVQNDFVSGTLNMSQRSAKQNGLQVIEPINKLLDTVNFNA--VFYSLDWHPSN 93
K AL+V++ N+F+ G L A + + P K+++T + V Y D H
Sbjct: 2 KPALVVVDXVNEFIHGRL------ATPEAXKTVGPARKVIETFRRSGLPVVYVNDSH--- 52
Query: 94 HISFIDNIKLRKIHYTSTVQPEDAQTYDTVVFDGDTPMKQKLWPRHCVQDSWGAELHKDL 153
P+D + ++W RH + G+E+ ++
Sbjct: 53 -------------------YPDDPEI--------------RIWGRHSXKGDDGSEVIDEI 79
Query: 154 KIVDNAIKVYMGTDPEEDSYSVFWDSKKLKRTSLAKQLEAKKVTDVYVCGLAYDVCVGAS 213
+ + E+ +YS F+ T+L L A + V + GL D+CV +
Sbjct: 80 RPSAGDYVL------EKHAYSGFYG------TNLDXILRANGIDTVVLIGLDADICVRHT 127
Query: 214 AIDAITIGYRTILIEDCC 231
A DA+ YR I++ED
Sbjct: 128 AADALYRNYRIIVVEDAV 145
>pdb|3S2S|A Chain A, The Crystal Structure Of PyrazinamidaseNICOTINAMIDASE FROM
Streptococcus Mutans Ua159
pdb|3S2S|B Chain B, The Crystal Structure Of PyrazinamidaseNICOTINAMIDASE FROM
Streptococcus Mutans Ua159
pdb|3S2S|C Chain C, The Crystal Structure Of PyrazinamidaseNICOTINAMIDASE FROM
Streptococcus Mutans Ua159
pdb|3S2S|D Chain D, The Crystal Structure Of PyrazinamidaseNICOTINAMIDASE FROM
Streptococcus Mutans Ua159
Length = 217
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 57/125 (45%), Gaps = 13/125 (10%)
Query: 134 KLWPRHCVQDSWGAELHKDLKIVDNAIKVYMGTDPEEDSYSVFWDSKK----LKRTSLAK 189
KL+P H ++ + G +L+ L Y E+ VFW K+ T L
Sbjct: 100 KLFPPHNIKGTSGRDLYGALA------DFYQ---KHENDKRVFWMDKRHYSAFSGTDLDI 150
Query: 190 QLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGMDLDDIERTRNTILEN 249
+L ++V V + G+ D+CV +AIDA +GY+ +++ + ++ + N +
Sbjct: 151 RLRERRVDTVVLTGVLTDICVLHTAIDAYNLGYQIEVVQSAVASLSQENHQFALNHLQNV 210
Query: 250 YGSCV 254
G+ +
Sbjct: 211 LGATI 215
>pdb|3O94|A Chain A, High Resolution Crystal Structures Of Streptococcus
Pneumoniae Nicotinamidase With Trapped Intermediates
Provide Insights Into Catalytic Mechanism And Inhibition
By Aldehydes
pdb|3O94|B Chain B, High Resolution Crystal Structures Of Streptococcus
Pneumoniae Nicotinamidase With Trapped Intermediates
Provide Insights Into Catalytic Mechanism And Inhibition
By Aldehydes
pdb|3O94|C Chain C, High Resolution Crystal Structures Of Streptococcus
Pneumoniae Nicotinamidase With Trapped Intermediates
Provide Insights Into Catalytic Mechanism And Inhibition
By Aldehydes
pdb|3O94|D Chain D, High Resolution Crystal Structures Of Streptococcus
Pneumoniae Nicotinamidase With Trapped Intermediates
Provide Insights Into Catalytic Mechanism And Inhibition
By Aldehydes
Length = 211
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 73/189 (38%), Gaps = 47/189 (24%)
Query: 38 ALLVINVQNDFVSGTLNMSQRSAKQNGLQVIEPINKLLDTVNFNAVFYSLDWHPSNHISF 97
AL+ I+ DFV+ + ++ + Q I + +L + +F+++D H N
Sbjct: 24 ALISIDYTEDFVADSGKLTAGAPAQAISDAISKVTRLAFERG-DYIFFTIDAHEEN---- 78
Query: 98 IDNIKLRKIHYTSTVQPEDAQTYDTVVFDGDTPMKQKLWPRHCVQDSWGAELHKDLKIVD 157
PE KL+P H + + G L+ DL I
Sbjct: 79 ------------DCFHPE-----------------SKLFPPHNLIGTSGRNLYGDLGIFY 109
Query: 158 NAIKVYMGTDPEEDSYSVFWDSKK----LKRTSLAKQLEAKKVTDVYVCGLAYDVCVGAS 213
G+D VFW K+ T L +L ++V+ V + G+ D+ V +
Sbjct: 110 QE----HGSDSR-----VFWMDKRHYSAFSGTDLDIRLRERRVSTVILTGVLTDISVLHT 160
Query: 214 AIDAITIGY 222
AIDA +GY
Sbjct: 161 AIDAYNLGY 169
>pdb|3O91|A Chain A, High Resolution Crystal Structures Of Streptococcus
Pneumoniae Nicotinamidase With Trapped Intermediates
Provide Insights Into Catalytic Mechanism And Inhibition
By Aldehydes
pdb|3O91|B Chain B, High Resolution Crystal Structures Of Streptococcus
Pneumoniae Nicotinamidase With Trapped Intermediates
Provide Insights Into Catalytic Mechanism And Inhibition
By Aldehydes
pdb|3O91|C Chain C, High Resolution Crystal Structures Of Streptococcus
Pneumoniae Nicotinamidase With Trapped Intermediates
Provide Insights Into Catalytic Mechanism And Inhibition
By Aldehydes
pdb|3O91|D Chain D, High Resolution Crystal Structures Of Streptococcus
Pneumoniae Nicotinamidase With Trapped Intermediates
Provide Insights Into Catalytic Mechanism And Inhibition
By Aldehydes
pdb|3O92|A Chain A, High Resolution Crystal Structures Of Streptococcus
Pneumoniae Nicotinamidase With Trapped Intermediates
Provide Insights Into Catalytic Mechanism And Inhibition
By Aldehydes
pdb|3O92|B Chain B, High Resolution Crystal Structures Of Streptococcus
Pneumoniae Nicotinamidase With Trapped Intermediates
Provide Insights Into Catalytic Mechanism And Inhibition
By Aldehydes
pdb|3O92|C Chain C, High Resolution Crystal Structures Of Streptococcus
Pneumoniae Nicotinamidase With Trapped Intermediates
Provide Insights Into Catalytic Mechanism And Inhibition
By Aldehydes
pdb|3O92|D Chain D, High Resolution Crystal Structures Of Streptococcus
Pneumoniae Nicotinamidase With Trapped Intermediates
Provide Insights Into Catalytic Mechanism And Inhibition
By Aldehydes
pdb|3O93|A Chain A, High Resolution Crystal Structures Of Streptococcus
Pneumoniae Nicotinamidase With Trapped Intermediates
Provide Insights Into Catalytic Mechanism And Inhibition
By Aldehydes
pdb|3O93|B Chain B, High Resolution Crystal Structures Of Streptococcus
Pneumoniae Nicotinamidase With Trapped Intermediates
Provide Insights Into Catalytic Mechanism And Inhibition
By Aldehydes
pdb|3O93|C Chain C, High Resolution Crystal Structures Of Streptococcus
Pneumoniae Nicotinamidase With Trapped Intermediates
Provide Insights Into Catalytic Mechanism And Inhibition
By Aldehydes
pdb|3O93|D Chain D, High Resolution Crystal Structures Of Streptococcus
Pneumoniae Nicotinamidase With Trapped Intermediates
Provide Insights Into Catalytic Mechanism And Inhibition
By Aldehydes
Length = 211
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 73/189 (38%), Gaps = 47/189 (24%)
Query: 38 ALLVINVQNDFVSGTLNMSQRSAKQNGLQVIEPINKLLDTVNFNAVFYSLDWHPSNHISF 97
AL+ I+ DFV+ + ++ + Q I + +L + +F+++D H N
Sbjct: 24 ALISIDYTEDFVADSGKLTAGAPAQAISDAISKVTRLAFERG-DYIFFTIDAHEEN---- 78
Query: 98 IDNIKLRKIHYTSTVQPEDAQTYDTVVFDGDTPMKQKLWPRHCVQDSWGAELHKDLKIVD 157
PE KL+P H + + G L+ DL I
Sbjct: 79 ------------DCFHPE-----------------SKLFPPHNLIGTSGRNLYGDLGIFY 109
Query: 158 NAIKVYMGTDPEEDSYSVFWDSKK----LKRTSLAKQLEAKKVTDVYVCGLAYDVCVGAS 213
G+D VFW K+ T L +L ++V+ V + G+ D+ V +
Sbjct: 110 QE----HGSDSR-----VFWMDKRHYSAFSGTDLDIRLRERRVSTVILTGVLTDIXVLHT 160
Query: 214 AIDAITIGY 222
AIDA +GY
Sbjct: 161 AIDAYNLGY 169
>pdb|3OT4|A Chain A, Structure And Catalytic Mechanism Of Bordetella
Bronchiseptica Nicf
pdb|3OT4|B Chain B, Structure And Catalytic Mechanism Of Bordetella
Bronchiseptica Nicf
pdb|3OT4|C Chain C, Structure And Catalytic Mechanism Of Bordetella
Bronchiseptica Nicf
pdb|3OT4|D Chain D, Structure And Catalytic Mechanism Of Bordetella
Bronchiseptica Nicf
pdb|3OT4|E Chain E, Structure And Catalytic Mechanism Of Bordetella
Bronchiseptica Nicf
pdb|3OT4|F Chain F, Structure And Catalytic Mechanism Of Bordetella
Bronchiseptica Nicf
pdb|3OT4|G Chain G, Structure And Catalytic Mechanism Of Bordetella
Bronchiseptica Nicf
pdb|3OT4|H Chain H, Structure And Catalytic Mechanism Of Bordetella
Bronchiseptica Nicf
pdb|3UAO|A Chain A, Structure And Catalytic Mechanism Of The Vitamin B3
Degradative Enzyme Maleamate Amidohydrolase From
Bordetalla Bronchiseptica Rb50
pdb|3UAO|B Chain B, Structure And Catalytic Mechanism Of The Vitamin B3
Degradative Enzyme Maleamate Amidohydrolase From
Bordetalla Bronchiseptica Rb50
pdb|3UAO|C Chain C, Structure And Catalytic Mechanism Of The Vitamin B3
Degradative Enzyme Maleamate Amidohydrolase From
Bordetalla Bronchiseptica Rb50
pdb|3UAO|D Chain D, Structure And Catalytic Mechanism Of The Vitamin B3
Degradative Enzyme Maleamate Amidohydrolase From
Bordetalla Bronchiseptica Rb50
pdb|3UAO|E Chain E, Structure And Catalytic Mechanism Of The Vitamin B3
Degradative Enzyme Maleamate Amidohydrolase From
Bordetalla Bronchiseptica Rb50
pdb|3UAO|F Chain F, Structure And Catalytic Mechanism Of The Vitamin B3
Degradative Enzyme Maleamate Amidohydrolase From
Bordetalla Bronchiseptica Rb50
pdb|3UAO|G Chain G, Structure And Catalytic Mechanism Of The Vitamin B3
Degradative Enzyme Maleamate Amidohydrolase From
Bordetalla Bronchiseptica Rb50
pdb|3UAO|H Chain H, Structure And Catalytic Mechanism Of The Vitamin B3
Degradative Enzyme Maleamate Amidohydrolase From
Bordetalla Bronchiseptica Rb50
Length = 236
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 37/81 (45%)
Query: 185 TSLAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGMDLDDIERTRN 244
T LA L + V + V G V AS +DA++ G+R +++ DC L E
Sbjct: 148 TMLAAWLAQRGVQTLLVAGATTSGXVRASVVDAMSAGFRPLVLSDCVGDRALGPHEANLF 207
Query: 245 TILENYGSCVQSDEVKSMVEG 265
+ + Y + + DE + +G
Sbjct: 208 DMRQKYAAVMTHDEALAKTKG 228
>pdb|3HB7|A Chain A, The Crystal Structure Of An Isochorismatase-Like Hydrolase
From Alkaliphilus Metalliredigens To 2.3a
pdb|3HB7|C Chain C, The Crystal Structure Of An Isochorismatase-Like Hydrolase
From Alkaliphilus Metalliredigens To 2.3a
pdb|3HB7|B Chain B, The Crystal Structure Of An Isochorismatase-Like Hydrolase
From Alkaliphilus Metalliredigens To 2.3a
pdb|3HB7|D Chain D, The Crystal Structure Of An Isochorismatase-Like Hydrolase
From Alkaliphilus Metalliredigens To 2.3a
pdb|3HB7|E Chain E, The Crystal Structure Of An Isochorismatase-Like Hydrolase
From Alkaliphilus Metalliredigens To 2.3a
pdb|3HB7|F Chain F, The Crystal Structure Of An Isochorismatase-Like Hydrolase
From Alkaliphilus Metalliredigens To 2.3a
pdb|3HB7|G Chain G, The Crystal Structure Of An Isochorismatase-Like Hydrolase
From Alkaliphilus Metalliredigens To 2.3a
pdb|3HB7|H Chain H, The Crystal Structure Of An Isochorismatase-Like Hydrolase
From Alkaliphilus Metalliredigens To 2.3a
Length = 204
Score = 35.4 bits (80), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 22/98 (22%)
Query: 137 PRHCVQDSWGAELHKDLKIVDNAIKVYMGTDPEEDSYSVFWDSKKLKRTSLAKQ-----L 191
P H V+ +WG++ +L P+ED Y V +K + + A L
Sbjct: 73 PLHAVKGTWGSDFIPELY-------------PQEDEYIV----QKRRHSGFAHTDLDLYL 115
Query: 192 EAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIED 229
+ + + V + G+ +VCV ++A DA+ Y+ I + D
Sbjct: 116 KEEGIDTVVLTGVWTNVCVRSTATDALANAYKVITLSD 153
>pdb|1J2R|A Chain A, Crystal Structure Of Escherichia Coli Gene Product Yecd At
1.3 A Resolution
pdb|1J2R|B Chain B, Crystal Structure Of Escherichia Coli Gene Product Yecd At
1.3 A Resolution
pdb|1J2R|C Chain C, Crystal Structure Of Escherichia Coli Gene Product Yecd At
1.3 A Resolution
pdb|1J2R|D Chain D, Crystal Structure Of Escherichia Coli Gene Product Yecd At
1.3 A Resolution
Length = 199
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/75 (21%), Positives = 35/75 (46%)
Query: 185 TSLAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGMDLDDIERTRN 244
T L QL + + + +CG++ ++ V ++A +A +G+ ++ ED C + + N
Sbjct: 121 TDLELQLRRRGIDTIVLCGISTNIGVESTARNAWELGFNLVIAEDACSAASAEQHNNSIN 180
Query: 245 TILENYGSCVQSDEV 259
I +E+
Sbjct: 181 HIYPRIARVRSVEEI 195
>pdb|3TXY|A Chain A, Structure Of An Isochorismatase Family Protein
(Bth_ii2229) From Burkholderia Thailandensis
Length = 199
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 38/85 (44%)
Query: 185 TSLAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGMDLDDIERTRN 244
T L QL + +TD+ + G+A ++ V ++A +A Y +++ D D
Sbjct: 115 TDLDVQLRRRGITDIVLTGIATNIGVESTAREAYENNYNVVVVSDAVSTWSTDAQTFALT 174
Query: 245 TILENYGSCVQSDEVKSMVEGKDRR 269
I G + +V++ +E + R
Sbjct: 175 QIFPKLGQVATAADVEAALETQQTR 199
>pdb|3IRV|A Chain A, Crystal Structure Of Cysteine Hydrolase Pspph_2384 From
Pseudomonas Syringae Pv. Phaseolicola 1448a
Length = 233
Score = 31.6 bits (70), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 47/208 (22%), Positives = 76/208 (36%), Gaps = 51/208 (24%)
Query: 36 KSALLVINVQNDFVSGTLNMSQRSAKQNGLQVIEPINKLLDTVNFNAVFYSLDWHPSNHI 95
++A++V+++Q F T + +S +++PI KLL V
Sbjct: 22 RTAVIVVDMQKVFCEPTGALYVKSTAD----IVQPIQKLLQAARAAQVMV---------- 67
Query: 96 SFIDNIKLRKIHYTSTVQPEDAQTYDTVVFDG-DTPMKQKLWPRHCVQDSWGAELHKDLK 154
I LR I V DG DT + L+P D A D++
Sbjct: 68 -----IYLRHI----------------VRGDGSDTGRMRDLYPN---VDQILARHDPDVE 103
Query: 155 IVDNAIKVYMGTDPEEDSYSV---FWDSKKLKRTSLAKQLEAKKVTDVYVCGLAYDVCVG 211
+++ P+ D V F+ T L L A+ V + VCG +VC
Sbjct: 104 VIE-------ALAPQSDDVIVDKLFYSG--FHNTDLDTVLRARDVDTIIVCGTVTNVCCE 154
Query: 212 ASAIDAITIGYRTILIEDCCRGMDLDDI 239
+ D + Y+ I + D MD D+
Sbjct: 155 TTIRDGVHREYKVIALSDANAAMDYPDV 182
>pdb|3OQP|A Chain A, Crystal Structure Of A Putative Isochorismatase
(Bxe_a0706) From Burkholderia Xenovorans Lb400 At 1.22
A Resolution
pdb|3OQP|B Chain B, Crystal Structure Of A Putative Isochorismatase
(Bxe_a0706) From Burkholderia Xenovorans Lb400 At 1.22
A Resolution
Length = 211
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 17/19 (89%)
Query: 35 PKSALLVINVQNDFVSGTL 53
P+ AL+VI+VQN++V+G L
Sbjct: 5 PRRALIVIDVQNEYVTGDL 23
>pdb|4H17|A Chain A, Crystal Structure Of An Isochorismatase (Pp1826) From
Pseudomonas Putida Kt2440 At 1.60 A Resolution
pdb|4H17|B Chain B, Crystal Structure Of An Isochorismatase (Pp1826) From
Pseudomonas Putida Kt2440 At 1.60 A Resolution
Length = 197
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 23/55 (41%)
Query: 182 LKRTSLAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGMDL 236
K T L + L+ D+ VCG V + A GYR L+ED DL
Sbjct: 109 FKNTKLHETLQELGHLDLIVCGFXSHSSVSTTVRRAKDYGYRCTLVEDASATRDL 163
>pdb|3QAQ|A Chain A, Crystal Structure Of Pi3k-Gamma In Complex With
Triazine-Benzimidazole 1
pdb|3QAR|A Chain A, Crystal Structure Of Pi3k-Gamma In Complex With
Triazine-Benzimidazole 32
pdb|3QJZ|A Chain A, Crystal Structure Of Pi3k-Gamma In Complex With
Benzothiazole 1
pdb|3QK0|A Chain A, Crystal Structure Of Pi3k-Gamma In Complex With
Benzothiazole 82
pdb|3S2A|A Chain A, Crystal Structure Of Pi3k-Gamma In Complex With A
Quinoline Inhibitor
pdb|4FHJ|A Chain A, Crystal Structure Of Pi3k-Gamma In Complex With
Imidazopyridine 2
pdb|4F1S|A Chain A, Crystal Structure Of Human Pi3k-Gamma In Complex With A
Pyridyl- Triazine-Sulfonamide Inhibitor
pdb|4FLH|A Chain A, Crystal Structure Of Human Pi3k-Gamma In Complex With
Amg511
pdb|4FJY|A Chain A, Crystal Structure Of Pi3k-Gamma In Complex With
Quinoline-Indoline Inhibitor 24f
pdb|4FJZ|A Chain A, Crystal Structure Of Pi3k-Gamma In Complex With
Pyrrolo-Pyridine Inhibitor 63
Length = 960
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
Query: 127 GDTPMKQKLWPRHCVQDSWGAELH 150
G+TP+K W RHC+++ G E+H
Sbjct: 141 GETPIKNFQWVRHCLKN--GEEIH 162
>pdb|4DK5|A Chain A, Crystal Structure Of Human Pi3k-Gamma In Complex With A
Pyridyl- Triazine Inhibitor
Length = 959
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
Query: 127 GDTPMKQKLWPRHCVQDSWGAELH 150
G+TP+K W RHC+++ G E+H
Sbjct: 140 GETPIKNFQWVRHCLKN--GEEIH 161
>pdb|3ENE|A Chain A, Complex Of Pi3k Gamma With An Inhibitor
Length = 959
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
Query: 127 GDTPMKQKLWPRHCVQDSWGAELH 150
G+TP+K W RHC+++ G E+H
Sbjct: 140 GETPIKNFQWVRHCLKN--GEEIH 161
>pdb|1YIF|A Chain A, Crystal Structure Of Beta-1,4-Xylosidase From Bacillus
Subtilis, New York Structural Genomics Consortium
pdb|1YIF|B Chain B, Crystal Structure Of Beta-1,4-Xylosidase From Bacillus
Subtilis, New York Structural Genomics Consortium
pdb|1YIF|C Chain C, Crystal Structure Of Beta-1,4-Xylosidase From Bacillus
Subtilis, New York Structural Genomics Consortium
pdb|1YIF|D Chain D, Crystal Structure Of Beta-1,4-Xylosidase From Bacillus
Subtilis, New York Structural Genomics Consortium
Length = 533
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 31/67 (46%)
Query: 140 CVQDSWGAELHKDLKIVDNAIKVYMGTDPEEDSYSVFWDSKKLKRTSLAKQLEAKKVTDV 199
C S+ L+ + I VY+ + E+D Y F+ K + LE+KK++D
Sbjct: 437 CDNFSFSQPLNNKIVIPREVKYVYLRVNIEKDKYYYFYSFNKEDWHKIDIALESKKLSDD 496
Query: 200 YVCGLAY 206
Y+ G +
Sbjct: 497 YIRGGGF 503
>pdb|1E8Y|A Chain A, Structure Determinants Of Phosphoinositide 3-Kinase
Inhibition By Wortmannin, Ly294002, Quercetin, Myricetin
And Staurosporine
pdb|1E8Z|A Chain A, Structure Determinants Of Phosphoinositide 3-Kinase
Inhibition By Wortmannin, Ly294002, Quercetin, Myricetin
And Staurosporine
pdb|2A4Z|A Chain A, Crystal Structure Of Human Pi3kgamma Complexed With
As604850
pdb|2A5U|A Chain A, Crystal Structure Of Human Pi3kgamma Complexed With
As605240
pdb|2CHW|A Chain A, A Pharmacological Map Of The Pi3-K Family Defines A Role
For P110 Alpha In Signaling: The Structure Of Complex Of
Phosphoinositide 3-Kinase Gamma With Inhibitor Pik-39
pdb|2CHX|A Chain A, A Pharmacological Map Of The Pi3-K Family Defines A Role
For P110alpha In Signaling: The Structure Of Complex Of
Phosphoinositide 3-Kinase Gamma With Inhibitor Pik-90
pdb|2CHZ|A Chain A, A Pharmacological Map Of The Pi3-K Family Defines A Role
For P110alpha In Signaling: The Structure Of Complex Of
Phosphoinositide 3-Kinase Gamma With Inhibitor Pik-93
pdb|3DPD|A Chain A, Achieving Multi-Isoform Pi3k Inhibition In A Series Of
Substituted 3,4-Dihydro-2h-Benzo[1,4]oxazines
pdb|2V4L|A Chain A, Complex Of Human Phosphoinositide 3-kinase Catalytic
Subunit Gamma (p110 Gamma) With Pik-284
pdb|3IBE|A Chain A, Crystal Structure Of A Pyrazolopyrimidine Inhibitor Bound
To Pi3 Kinase Gamma
pdb|3LJ3|A Chain A, Pi3-Kinase-Gamma With A Pyrrolopyridine-Benzofuran
Inhibitor
pdb|3ML8|A Chain A, Discovery Of The Highly Potent Pi3kMTOR DUAL INHIBITOR
PF-0 Through Structure Based Drug Design
pdb|3ML9|A Chain A, Discovery Of The Highly Potent Pi3kMTOR DUAL INHIBITOR
PF-0 Through Structure Based Drug Design
pdb|3MJW|A Chain A, Pi3 Kinase Gamma With A Benzofuranone Inhibitor
pdb|3P2B|A Chain A, Crystal Structure Of Pi3k Gamma With
3-(2-Morpholino-6-(Pyridin-3-
Ylamino)pyrimidin-4-Yl)phenol
pdb|3SD5|A Chain A, Crystal Structure Of Pi3k Gamma With
5-(2,4-Dimorpholinopyrimidin-6-
Yl)-4-(Trifluoromethyl)pyridin-2-Amine
pdb|3TJP|A Chain A, Crystal Structure Of Pi3k Gamma With
N6-(3,4-Dimethoxyphenyl)-2-
Morpholino-[4,5'-Bipyrimidine]-2',6-Diamine
pdb|4FUL|A Chain A, Pi3 Kinase Gamma Bound To A Pyrmidine Inhibitor
Length = 966
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
Query: 127 GDTPMKQKLWPRHCVQDSWGAELH 150
G+TP+K W RHC+++ G E+H
Sbjct: 141 GETPIKNFQWVRHCLKN--GEEIH 162
>pdb|3DBS|A Chain A, Structure Of Pi3k Gamma In Complex With Gdc0941
pdb|3L13|A Chain A, Crystal Structures Of Pan-Pi3-Kinase And Dual
Pan-Pi3-KinaseMTOR Inhibitors
pdb|4AOF|A Chain A, Selective Small Molecule Inhibitor Discovered By
Chemoproteomic Assay Platform Reveals Regulation Of Th17
Cell Differentiation By Pi3kgamma
Length = 960
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
Query: 127 GDTPMKQKLWPRHCVQDSWGAELH 150
G+TP+K W RHC+++ G E+H
Sbjct: 141 GETPIKNFQWVRHCLKN--GEEIH 162
>pdb|3CST|A Chain A, Crystal Structure Of Pi3k P110gamma Catalytical Domain In
Complex With Organoruthenium Inhibitor E5e2
pdb|3CSF|A Chain A, Crystal Structure Of Pi3k P110gamma Catalytical Domain In
Complex With Organoruthenium Inhibitor Dw2
pdb|3L16|A Chain A, Discovery Of (Thienopyrimidin-2-Yl)aminopyrimidines As
Potent, Selective, And Orally Available Pan-Pi3-Kinase
And Dual Pan-Pi3- KinaseMTOR INHIBITORS FOR THE
TREATMENT OF CANCER
pdb|3L17|A Chain A, Discovery Of (Thienopyrimidin-2-Yl)aminopyrimidines As
Potent, Selective, And Orally Available Pan-Pi3-Kinase
And Dual Pan-Pi3- KinaseMTOR INHIBITORS FOR THE
TREATMENT OF CANCER
pdb|3L08|A Chain A, Structure Of Pi3k Gamma With A Potent Inhibitor:
Gsk2126458
pdb|3OAW|A Chain A, 4-Methylpteridineones As Orally Active And Selective
Pi3kMTOR DUAL Inhibitors
pdb|3PRE|A Chain A, Quinazolines With Intra-Molecular Hydrogen Bonding
Scaffold (Imhbs) As Pi3kMTOR DUAL INHIBITORS.
pdb|3PRZ|A Chain A, Quinazolines With Intra-Molecular Hydrogen Bonding
Scaffold (Imhbs) As Pi3kMTOR DUAL INHIBITORS.
pdb|3PS6|A Chain A, Quinazolines With Intra-Molecular Hydrogen Bonding
Scaffold (Imhbs) As Pi3kMTOR DUAL INHIBITORS.
pdb|3R7Q|A Chain A, Structure-Based Design Of Thienobenzoxepin Inhibitors Of
Pi3- Kinase
pdb|3R7R|A Chain A, Structure-Based Design Of Thienobenzoxepin Inhibitors Of
Pi3-Kinase
pdb|3ZVV|A Chain A, Fragment Bound To Pi3kinase Gamma
pdb|3ZW3|A Chain A, Fragment Based Discovery Of A Novel And Selective Pi3
Kinase Inhibitor
pdb|3TL5|A Chain A, Discovery Of Gdc-0980: A Potent, Selective, And Orally
Available Class I Phosphatidylinositol 3-Kinase
(Pi3k)MAMMALIAN TARGET OF RAPAMYCIN (Mtor) Kinase
Inhibitor For The Treatment Of Cancer
pdb|3T8M|A Chain A, Rational Design Of Pi3k-Alpha Inhibitors That Exhibit
Selectivity Over The Pi3k-Beta Isoform
pdb|4GB9|A Chain A, Potent And Highly Selective Benzimidazole Inhibitors Of
Pi3k-Delta
pdb|4G11|A Chain A, X-Ray Structure Of Pi3k-Gamma Bound To A
4-(Morpholin-4-Yl)- (6-Oxo-1,
6-Dihydropyrimidin-2-Yl)amide Inhibitor
pdb|4HLE|A Chain A, Compound 21 (1-alkyl-substituted 1,2,4-triazoles)
Length = 966
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
Query: 127 GDTPMKQKLWPRHCVQDSWGAELH 150
G+TP+K W RHC+++ G E+H
Sbjct: 141 GETPIKNFQWVRHCLKN--GEEIH 162
>pdb|1HE8|A Chain A, Ras G12v-Pi 3-Kinase Gamma Complex
Length = 965
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
Query: 127 GDTPMKQKLWPRHCVQDSWGAELH 150
G+TP+K W RHC+++ G E+H
Sbjct: 140 GETPIKNFQWVRHCLKN--GEEIH 161
>pdb|3NZS|A Chain A, Structure-Based Optimization Of Pyrazolo -Pyrimidine And
-Pyridine Inhibitors Of Pi3-Kinase
pdb|3NZU|A Chain A, Structure-Based Optimization Of Pyrazolo -Pyrimidine And
-Pyridine Inhibitors Of Pi3-Kinase
Length = 954
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
Query: 127 GDTPMKQKLWPRHCVQDSWGAELH 150
G+TP+K W RHC+++ G E+H
Sbjct: 137 GETPIKNFQWVRHCLKN--GEEIH 158
>pdb|4ANX|A Chain A, Complexes Of Pi3kgamma With Isoform Selective Inhibitors
Length = 980
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
Query: 127 GDTPMKQKLWPRHCVQDSWGAELH 150
G+TP+K W RHC+++ G E+H
Sbjct: 145 GETPIKNFQWVRHCLKN--GEEIH 166
>pdb|4ANV|A Chain A, Complexes Of Pi3kgamma With Isoform Selective Inhibitors
Length = 980
Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
Query: 127 GDTPMKQKLWPRHCVQDSWGAELH 150
G+TP+K W RHC+++ G E+H
Sbjct: 145 GETPIKNFQWVRHCLKN--GEEIH 166
>pdb|4ANU|A Chain A, Complexes Of Pi3kgamma With Isoform Selective Inhibitors.
pdb|4ANW|A Chain A, Complexes Of Pi3kgamma With Isoform Selective Inhibitors
Length = 980
Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
Query: 127 GDTPMKQKLWPRHCVQDSWGAELH 150
G+TP+K W RHC+++ G E+H
Sbjct: 145 GETPIKNFQWVRHCLKN--GEEIH 166
>pdb|3APC|A Chain A, Crystal Structure Of Human Pi3k-Gamma In Complex With
Ch5132799
pdb|3APD|A Chain A, Crystal Structure Of Human Pi3k-Gamma In Complex With
Ch5108134
pdb|3APF|A Chain A, Crystal Structure Of Human Pi3k-Gamma In Complex With
Ch5039699
Length = 966
Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
Query: 127 GDTPMKQKLWPRHCVQDSWGAELH 150
G+TP+K W RHC+++ G E+H
Sbjct: 147 GETPIKNFQWVRHCLKN--GEEIH 168
>pdb|3HU5|A Chain A, Crystal Structure Of Isochorismatase Family Protein From
Desulfovibrio Vulgaris Subsp. Vulgaris Str.
Hildenborough
pdb|3HU5|B Chain B, Crystal Structure Of Isochorismatase Family Protein From
Desulfovibrio Vulgaris Subsp. Vulgaris Str.
Hildenborough
Length = 204
Score = 27.7 bits (60), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 191 LEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCC 231
L + V + V G Y C+ +A+DA + Y +++ D C
Sbjct: 121 LRRRGVDTLLVSGTQYPNCIRGTAVDAFALDYDVVVVTDAC 161
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,654,585
Number of Sequences: 62578
Number of extensions: 379241
Number of successful extensions: 971
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 930
Number of HSP's gapped (non-prelim): 39
length of query: 340
length of database: 14,973,337
effective HSP length: 99
effective length of query: 241
effective length of database: 8,778,115
effective search space: 2115525715
effective search space used: 2115525715
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)