BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8942
(340 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P21369|PNCA_ECOLI Pyrazinamidase/nicotinamidase OS=Escherichia coli (strain K12)
GN=pncA PE=3 SV=1
Length = 213
Score = 115 bits (289), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/204 (35%), Positives = 106/204 (51%), Gaps = 24/204 (11%)
Query: 35 PKSALLVINVQNDFVSGTLNMSQRSAKQNGLQVIEPINKLLD--TVNFNAVFYSLDWHPS 92
P ALL++++QNDF +G A G ++ N+L+D AV S DWHP+
Sbjct: 2 PPRALLLVDLQNDFCAGG-----ALAVPEGDSTVDVANRLIDWCQSRGEAVIASQDWHPA 56
Query: 93 NHISFIDNIKLRKIHYTSTVQPEDAQTYDTVVFDGDTPMKQKLWPRHCVQDSWGAELHKD 152
NH SF V+P Y DG + Q WP HCVQ+S GA+LH
Sbjct: 57 NHGSFASQ---------HGVEP-----YTPGQLDG---LPQTFWPDHCVQNSEGAQLHPL 99
Query: 153 LKIVDNAIKVYMGTDPEEDSYSVFWDSKKLKRTSLAKQLEAKKVTDVYVCGLAYDVCVGA 212
L A + G +P DSYS F+D+ + ++TSL L ++ ++ V GLA D CV
Sbjct: 100 LHQKAIAAVFHKGENPLVDSYSAFFDNGRRQKTSLDDWLRDHEIDELIVMGLATDYCVKF 159
Query: 213 SAIDAITIGYRTILIEDCCRGMDL 236
+ +DA+ +GY+ +I D CRG+++
Sbjct: 160 TVLDALQLGYKVNVITDGCRGVNI 183
>sp|P53184|PNC1_YEAST Nicotinamidase OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=PNC1 PE=1 SV=1
Length = 216
Score = 105 bits (262), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 66/207 (31%), Positives = 111/207 (53%), Gaps = 21/207 (10%)
Query: 38 ALLVINVQNDFVS--GTLNMSQRSAKQNGLQVIEPINKLLDTVN--FNAVFYSLDWHPSN 93
L+V+++QNDF+S G+L + + G ++I PI+ L+ + ++ + + DWHPS
Sbjct: 3 TLIVVDMQNDFISPLGSLTVPK------GEELINPISDLMQDADRDWHRIVVTRDWHPSR 56
Query: 94 HISFIDNIKLRKIHYTSTVQPEDAQTYDTVVFDGDTPMKQKLWPRHCVQDSWGAELHKDL 153
HISF N K + +P TY + D+ + LWP HCV+++WG++L +
Sbjct: 57 HISFAKNHKDK--------EPYSTYTYHSPRPGDDSTQEGILWPVHCVKNTWGSQLVDQI 108
Query: 154 --KIVDNAIKVY-MGTDPEEDSYSVFWDSKKLKRTSLAKQLEAKKVTDVYVCGLAYDVCV 210
++V IK+ G + + YS F D +T + K LE +VY+ G+A + CV
Sbjct: 109 MDQVVTKHIKIVDKGFLTDREYYSAFHDIWNFHKTDMNKYLEKHHTDEVYIVGVALEYCV 168
Query: 211 GASAIDAITIGYRTILIEDCCRGMDLD 237
A+AI A +GY+T ++ D R + D
Sbjct: 169 KATAISAAELGYKTTVLLDYTRPISDD 195
>sp|Q9USS0|PNC1_SCHPO Nicotinamidase OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=pnc1 PE=3 SV=2
Length = 220
Score = 83.2 bits (204), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 63/201 (31%), Positives = 102/201 (50%), Gaps = 25/201 (12%)
Query: 38 ALLVINVQNDFVSGTLNMSQRSAKQNGLQVIEPINKLLDT-VNFNAVFYSLDWHPSNHIS 96
AL++++VQNDFV S SA L+V+ IN+LL+ ++ V + D HP +H+S
Sbjct: 6 ALIIVDVQNDFVHPVYISSGESA----LEVVPVINRLLENDYKWDTVIATKDVHPKDHLS 61
Query: 97 FIDNIKLRKIHYTSTVQPE----DAQTYDTVVFDGDTPMKQKLWPRHCVQDSWGAELHKD 152
F + ++ST +P + + Y V KQ LW HCV+++ G E
Sbjct: 62 FTTS-------HSSTPKPSGTVVNIEAYGHV-------YKQTLWNSHCVENTPGCEFPDS 107
Query: 153 LKIVDNAIKVYMGTDPEEDSYSVFWDSKKLKRTSLAKQLEAKKVTDVYVCGLAYDVCVGA 212
L + G+D +SYS F+D+ + L L+ K +TDV++ G+A D+CV
Sbjct: 108 LNGDRIEFVIPKGSDRLVESYSGFYDAIG-RDNGLKAILDKKGITDVFIAGVATDICVKE 166
Query: 213 SAIDAITIGYRTILIEDCCRG 233
+A+ A Y T +I + +G
Sbjct: 167 TALHA-RHWYNTYIISEAVKG 186
>sp|Q88FY5|NICF_PSEPK Maleamate amidohydrolase OS=Pseudomonas putida (strain KT2440)
GN=nicF PE=1 SV=1
Length = 213
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 36/70 (51%)
Query: 185 TSLAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGMDLDDIERTRN 244
TSLA L A+ V V + G + C+ ASA+DA+ G+RTI++ +C D E
Sbjct: 130 TSLAPLLHAQGVDTVVLAGCSTSGCIRASAVDAMQHGFRTIVVRECVGDRHSDPHEANLF 189
Query: 245 TILENYGSCV 254
I YG V
Sbjct: 190 DIDSKYGDVV 199
>sp|Q1MW86|STTH_STRA9 Streptothricin hydrolase OS=Streptomyces albulus GN=sttH PE=1 SV=2
Length = 276
Score = 41.6 bits (96), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 29/46 (63%)
Query: 185 TSLAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDC 230
T L L+A VT++ VCG+ ++CV A+A A+ +G+R +L D
Sbjct: 152 TGLGALLDAAGVTELAVCGVLSEMCVAATARTALELGHRVVLPHDA 197
>sp|P74965|VENB_VIBVU Probable isochorismatase OS=Vibrio vulnificus (strain CMCP6)
GN=venB PE=3 SV=2
Length = 295
Score = 39.7 bits (91), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 60/142 (42%), Gaps = 9/142 (6%)
Query: 130 PMKQKLWPRHCVQDSWGAELHKDLKIVDNAIKVYMGTDPEE-DSYSVFWDSKKLKRTSLA 188
P Q R + D WG L+ D + + PEE D V W K+T L
Sbjct: 80 PANQHPTDRALLTDFWGPGLNGD------HVPIVEALSPEEGDIEYVKWRYSAFKKTPLL 133
Query: 189 KQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGMDLDDIERTRNTILE 248
+ + A+ + + + G+ + + ++ +DA + + +I D +D RT +
Sbjct: 134 EFMRAQGKSQLIISGIYGHIGILSTTLDAFMLDIQPFVIGDAIADFTREDHLRTLEYVAS 193
Query: 249 NYGSCVQSDEVKSMVEGKDRRP 270
GS + DE ++ E + ++P
Sbjct: 194 RSGSVKRLDE--ALDEIRSQKP 213
>sp|P94573|YWOC_BACSU Uncharacterized isochorismatase family protein YwoC OS=Bacillus
subtilis (strain 168) GN=ywoC PE=3 SV=2
Length = 189
Score = 38.5 bits (88), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 38/80 (47%)
Query: 185 TSLAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGMDLDDIERTRN 244
T L QL + + + +CG+A ++ V ++A +A +GY+ I I D ++ E T
Sbjct: 110 TDLDLQLRRRGIDTIVLCGIATNIGVESTAREAFQLGYQQIFITDAMSTFSDEEHEATLR 169
Query: 245 TILENYGSCVQSDEVKSMVE 264
I G ++E V+
Sbjct: 170 FIFPRIGKSRTTEEFLEQVK 189
>sp|O32091|PNCA_BACSU Uncharacterized isochorismatase family protein PncA OS=Bacillus
subtilis (strain 168) GN=pncA PE=3 SV=1
Length = 183
Score = 37.0 bits (84), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 50/97 (51%), Gaps = 13/97 (13%)
Query: 134 KLWPRHCVQDSWGAELHKDLKIV----DNAIKVYMGTDPEEDSYSVFWDSKKLKRTSLAK 189
+L+P H ++ + G +L+ L + ++ VY E+ YS F T L
Sbjct: 66 RLFPPHNIKGTEGKDLYGKLLPLYQKHEHEPNVYY---MEKTRYSAFAG------TDLEL 116
Query: 190 QLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTIL 226
+L +++ ++++ G+ D+CV +A+DA G+R ++
Sbjct: 117 KLRERQIGELHLAGVCTDICVLHTAVDAYNKGFRIVV 153
>sp|C5NU54|STTH_STRNR Streptothricin hydrolase OS=Streptomyces noursei GN=sttH PE=1 SV=1
Length = 252
Score = 35.8 bits (81), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 26/45 (57%)
Query: 185 TSLAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIED 229
T L L VT++ VCG+ ++CV A+A A+ G+R +L D
Sbjct: 134 TPLGDLLTDAGVTELAVCGVLSEMCVAATARTALVRGHRVVLPHD 178
>sp|P96654|YDDQ_BACSU Uncharacterized isochorismatase family protein YddQ OS=Bacillus
subtilis (strain 168) GN=yddQ PE=3 SV=1
Length = 180
Score = 35.4 bits (80), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 42/89 (47%), Gaps = 12/89 (13%)
Query: 143 DSWGAELHKDLKIVDNAIKVYMGTDPEEDSYSVFWDSKKLKRTSLAKQLEAKKVTDVYVC 202
++ G E+H+ ++ + E+++ V T L +L+ + V ++ VC
Sbjct: 64 NTEGVEIHESVRPL------------EKETVIVKHMPNSFFNTDLNGKLQEEGVKELVVC 111
Query: 203 GLAYDVCVGASAIDAITIGYRTILIEDCC 231
G+ +C+ A+ A+ GY ++ED C
Sbjct: 112 GMMSHMCIDATVRSAVEHGYVCQVVEDAC 140
>sp|P58760|RUTB_AGRT5 Peroxyureidoacrylate/ureidoacrylate amidohydrolase RutB
OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970)
GN=rutB PE=3 SV=1
Length = 228
Score = 34.3 bits (77), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Query: 173 YSVFWDSKKLKRTSLAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCR 232
YS F++ T++ L A+ + ++ G+A +VCV +S DA + Y +++ED
Sbjct: 135 YSGFFN------TNMDSVLRARGIRNLVFVGIATNVCVESSLRDAFHLEYFGVMLEDATH 188
Query: 233 GMDLDDIERT 242
+ D I++
Sbjct: 189 HLGPDFIQQA 198
>sp|B9JLT8|RUTB_AGRRK Peroxyureidoacrylate/ureidoacrylate amidohydrolase RutB
OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868)
GN=rutB PE=3 SV=1
Length = 246
Score = 34.3 bits (77), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Query: 173 YSVFWDSKKLKRTSLAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCR 232
YS F++ T++ L A+ + ++ G+A +VCV +S DA + Y +++ED
Sbjct: 153 YSGFFN------TNMDSVLRARGIRNLVFVGIATNVCVESSLRDAFHLEYFGVMLEDATH 206
Query: 233 GMDLDDIERT 242
+ D I++
Sbjct: 207 HLGPDFIQQA 216
>sp|P0ADI7|YECD_ECOLI Isochorismatase family protein YecD OS=Escherichia coli (strain
K12) GN=yecD PE=1 SV=2
Length = 188
Score = 33.9 bits (76), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 32/62 (51%)
Query: 185 TSLAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGMDLDDIERTRN 244
T L QL + + + +CG++ ++ V ++A +A +G+ ++ ED C + + N
Sbjct: 110 TDLELQLRRRGIDTIVLCGISTNIGVESTARNAWELGFNLVIAEDACSAASAEQHNNSIN 169
Query: 245 TI 246
I
Sbjct: 170 HI 171
>sp|P0ADI8|YECD_ECO57 Uncharacterized isochorismatase family protein YecD OS=Escherichia
coli O157:H7 GN=yecD PE=3 SV=2
Length = 188
Score = 33.9 bits (76), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 32/62 (51%)
Query: 185 TSLAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGMDLDDIERTRN 244
T L QL + + + +CG++ ++ V ++A +A +G+ ++ ED C + + N
Sbjct: 110 TDLELQLRRRGIDTIVLCGISTNIGVESTARNAWELGFNLVIAEDACSAASAEQHNNSIN 169
Query: 245 TI 246
I
Sbjct: 170 HI 171
>sp|Q6FFZ6|RUTB_ACIAD Peroxyureidoacrylate/ureidoacrylate amidohydrolase RutB
OS=Acinetobacter sp. (strain ADP1) GN=rutB PE=3 SV=1
Length = 245
Score = 33.5 bits (75), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Query: 169 EEDSYSVFWDSKKLKRTSLAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIE 228
E+ YS F++ T+L L A+ + ++ G+A +VCV ++ D + Y + ++
Sbjct: 146 EKPRYSGFFN------TALDSMLRARGIRNLVFVGIATNVCVESTLRDGFFLEYFGVALD 199
Query: 229 DCC 231
D C
Sbjct: 200 DAC 202
>sp|A8IAC9|RUTB_AZOC5 Peroxyureidoacrylate/ureidoacrylate amidohydrolase RutB
OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM
5975 / ORS 571) GN=rutB PE=3 SV=1
Length = 227
Score = 33.1 bits (74), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 173 YSVFWDSKKLKRTSLAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCR 232
YS F++S+ L A+ + ++ CG+A +VCV ++ D + Y IL+ED
Sbjct: 134 YSGFFNSQ------FDSILRARGIRNLVFCGIATNVCVESTLRDGFHLEYFGILLEDATH 187
Query: 233 GMDLDDIERT 242
+ +++
Sbjct: 188 QAGPEYVQKA 197
>sp|Q12136|SAS10_YEAST Something about silencing protein 10 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SAS10 PE=1 SV=1
Length = 610
Score = 32.0 bits (71), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 11/90 (12%)
Query: 108 YTSTVQPEDAQTYDTVVFDGDTPMKQKLWPRH----------CVQDSWGAEL-HKDLKIV 156
YTS + ++ + D D D P K++L+ R + D+ GA+L KD
Sbjct: 419 YTSKIDQQENKKTDRFKGDDDIPYKERLFERQQRLLDEARKRGMHDNNGADLDDKDYGSE 478
Query: 157 DNAIKVYMGTDPEEDSYSVFWDSKKLKRTS 186
D A+ + T E D Y K+ K+ S
Sbjct: 479 DEAVSRSINTQGENDYYQQVQRGKQDKKIS 508
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.136 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 122,981,861
Number of Sequences: 539616
Number of extensions: 4986999
Number of successful extensions: 10908
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 10882
Number of HSP's gapped (non-prelim): 23
length of query: 340
length of database: 191,569,459
effective HSP length: 118
effective length of query: 222
effective length of database: 127,894,771
effective search space: 28392639162
effective search space used: 28392639162
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)