Query psy8942
Match_columns 340
No_of_seqs 201 out of 1395
Neff 6.6
Searched_HMMs 46136
Date Fri Aug 16 23:21:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8942.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8942hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00331 alpha/beta hydrolase; 100.0 1.4E-40 2.9E-45 304.4 21.3 203 32-261 8-211 (212)
2 PRK11609 nicotinamidase/pyrazi 100.0 1.1E-39 2.4E-44 297.6 21.4 204 35-261 1-209 (212)
3 cd01011 nicotinamidase Nicotin 100.0 4.2E-39 9E-44 290.9 20.3 195 36-254 1-196 (196)
4 PRK11440 putative hydrolase; P 100.0 3.4E-36 7.4E-41 269.8 18.6 184 31-263 3-188 (188)
5 KOG4003|consensus 100.0 1E-36 2.3E-41 265.0 9.5 211 36-257 1-213 (223)
6 PF00857 Isochorismatase: Isoc 100.0 1.2E-35 2.6E-40 261.1 16.1 172 37-258 1-174 (174)
7 PLN02621 nicotinamidase 100.0 3.5E-35 7.5E-40 265.5 18.4 178 31-265 15-196 (197)
8 TIGR03614 RutB pyrimidine util 100.0 1.3E-34 2.8E-39 267.1 19.4 210 29-267 8-223 (226)
9 cd01015 CSHase N-carbamoylsarc 100.0 8.9E-35 1.9E-39 258.7 16.9 173 38-260 1-178 (179)
10 cd01013 isochorismatase Isocho 100.0 8.3E-35 1.8E-39 264.3 16.6 178 31-257 24-203 (203)
11 COG1335 PncA Amidases related 100.0 2.8E-33 6.1E-38 253.1 17.0 192 32-263 1-202 (205)
12 cd01012 YcaC_related YcaC rela 100.0 2.7E-32 5.9E-37 238.0 15.3 154 38-265 1-157 (157)
13 PLN02743 nicotinamidase 100.0 1.9E-31 4.2E-36 247.9 17.5 180 32-256 23-236 (239)
14 cd00431 cysteine_hydrolases Cy 100.0 2.1E-31 4.5E-36 231.6 15.4 158 38-246 1-160 (161)
15 cd01014 nicotinamidase_related 100.0 7.3E-30 1.6E-34 222.2 12.1 144 38-243 1-146 (155)
16 COG1535 EntB Isochorismate hyd 100.0 4.4E-29 9.5E-34 217.8 11.8 186 31-265 25-212 (218)
17 KOG4044|consensus 99.9 4.2E-21 9.1E-26 165.7 14.3 170 29-273 8-180 (201)
18 PF02739 5_3_exonuc_N: 5'-3' e 61.6 12 0.00027 32.9 4.3 44 185-228 89-132 (169)
19 PRK12360 4-hydroxy-3-methylbut 55.1 2E+02 0.0044 27.7 14.5 45 184-230 80-125 (281)
20 COG0761 lytB 4-Hydroxy-3-methy 52.2 2E+02 0.0044 27.8 10.9 45 184-230 78-123 (294)
21 PF00036 EF-hand_1: EF hand; 48.8 9.8 0.00021 23.6 1.1 23 3-25 4-26 (29)
22 KOG1250|consensus 48.7 1.4E+02 0.0031 30.3 9.6 105 142-265 201-312 (457)
23 PRK12390 1-aminocyclopropane-1 47.9 68 0.0015 31.2 7.4 70 188-257 59-130 (337)
24 PF13202 EF-hand_5: EF hand; P 45.8 11 0.00023 22.5 0.9 20 4-23 4-23 (25)
25 TIGR00732 dprA DNA protecting 41.9 1.1E+02 0.0025 28.1 7.4 63 196-262 156-219 (220)
26 TIGR01274 ACC_deam 1-aminocycl 40.8 93 0.002 30.2 7.1 70 187-256 57-128 (337)
27 PRK05443 polyphosphate kinase; 37.3 2.6E+02 0.0056 30.5 10.2 82 157-253 338-425 (691)
28 cd00008 53EXOc 5'-3' exonuclea 32.8 64 0.0014 30.0 4.3 44 185-228 88-131 (240)
29 TIGR03705 poly_P_kin polyphosp 32.7 2.4E+02 0.0053 30.6 9.1 82 157-253 329-416 (672)
30 COG0303 MoeA Molybdopterin bio 32.6 2E+02 0.0044 29.1 8.1 60 184-245 205-266 (404)
31 COG0678 AHP1 Peroxiredoxin [Po 32.2 78 0.0017 27.9 4.4 64 173-237 46-113 (165)
32 smart00475 53EXOc 5'-3' exonuc 31.6 74 0.0016 30.1 4.6 44 185-228 87-130 (259)
33 KOG2643|consensus 31.5 38 0.00082 34.6 2.6 27 5-31 431-457 (489)
34 PRK09482 flap endonuclease-lik 31.2 63 0.0014 30.6 4.0 44 185-228 87-130 (256)
35 PF13405 EF-hand_6: EF-hand do 28.9 31 0.00067 21.1 1.0 24 3-26 4-27 (31)
36 COG0855 Ppk Polyphosphate kina 28.4 3E+02 0.0064 29.8 8.6 83 157-254 342-430 (696)
37 TIGR03849 arch_ComA phosphosul 27.9 2.3E+02 0.0049 26.7 7.0 62 192-254 51-117 (237)
38 PF00465 Fe-ADH: Iron-containi 27.6 1.9E+02 0.004 28.4 6.8 80 185-265 12-102 (366)
39 cd06449 ACCD Aminocyclopropane 27.0 1.7E+02 0.0037 27.9 6.3 65 190-254 46-112 (307)
40 PF01408 GFO_IDH_MocA: Oxidore 26.9 3.1E+02 0.0068 21.5 8.8 65 185-253 52-116 (120)
41 PHA02567 rnh RnaseH; Provision 26.8 1.1E+02 0.0023 30.0 4.7 43 186-228 111-153 (304)
42 TIGR01275 ACC_deam_rel pyridox 26.8 1.7E+02 0.0038 27.8 6.3 42 190-231 50-91 (311)
43 PRK13512 coenzyme A disulfide 26.5 3.1E+02 0.0067 27.5 8.3 68 185-254 137-207 (438)
44 COG4927 Predicted choloylglyci 26.4 56 0.0012 31.4 2.7 53 285-338 176-228 (336)
45 PRK07200 aspartate/ornithine c 26.4 4.9E+02 0.011 26.3 9.6 67 198-264 189-261 (395)
46 PRK14976 5'-3' exonuclease; Pr 26.0 98 0.0021 29.6 4.4 44 185-228 93-136 (281)
47 PRK09564 coenzyme A disulfide 25.9 4.1E+02 0.009 26.3 9.1 68 186-255 139-210 (444)
48 COG3494 Uncharacterized protei 25.9 66 0.0014 30.7 3.0 80 185-266 58-139 (279)
49 PRK10736 hypothetical protein; 25.2 3.2E+02 0.007 27.4 8.0 64 197-264 220-284 (374)
50 PHA03003 palmytilated EEV memb 24.6 2.5E+02 0.0054 27.8 7.1 39 210-254 65-103 (369)
51 KOG1371|consensus 24.3 1.6E+02 0.0034 29.2 5.4 39 196-235 2-40 (343)
52 cd01563 Thr-synth_1 Threonine 23.8 3.4E+02 0.0073 25.9 7.8 62 187-256 61-122 (324)
53 PHA00439 exonuclease 23.5 1.3E+02 0.0029 29.0 4.7 43 186-228 101-144 (286)
54 PRK03910 D-cysteine desulfhydr 23.2 1.8E+02 0.0039 28.2 5.7 64 191-254 59-124 (331)
55 PF08659 KR: KR domain; Inter 22.8 3.9E+02 0.0084 23.1 7.3 75 184-260 13-92 (181)
56 PRK08329 threonine synthase; V 22.8 4.2E+02 0.0091 25.9 8.3 62 187-256 95-156 (347)
57 PF00070 Pyr_redox: Pyridine n 22.7 2.3E+02 0.0051 20.8 5.2 57 199-257 2-61 (80)
58 TIGR03821 AblA_like_1 lysine-2 22.6 3.2E+02 0.007 26.5 7.4 129 187-319 161-310 (321)
59 cd00138 PLDc Phospholipase D. 22.3 4.7E+02 0.01 21.9 8.2 64 185-249 24-94 (176)
60 cd08182 HEPD Hydroxyethylphosp 22.2 5E+02 0.011 25.4 8.7 78 185-264 12-100 (367)
61 COG1117 PstB ABC-type phosphat 21.9 80 0.0017 29.7 2.7 67 256-322 136-204 (253)
62 cd08189 Fe-ADH5 Iron-containin 21.8 5.3E+02 0.011 25.4 8.8 79 185-263 15-105 (374)
63 cd08187 BDH Butanol dehydrogen 21.6 4.6E+02 0.01 25.9 8.4 64 186-249 19-85 (382)
64 PF00837 T4_deiodinase: Iodoth 21.2 1.7E+02 0.0038 27.5 4.9 94 2-97 38-153 (237)
65 PRK03515 ornithine carbamoyltr 21.0 6.5E+02 0.014 24.8 9.1 68 198-265 158-225 (336)
66 cd00640 Trp-synth-beta_II Tryp 20.4 3.9E+02 0.0085 24.2 7.1 64 187-257 38-103 (244)
67 PRK01713 ornithine carbamoyltr 20.2 7E+02 0.015 24.4 9.2 78 186-264 142-224 (334)
68 PRK05329 anaerobic glycerol-3- 20.1 2.6E+02 0.0056 28.4 6.3 65 198-266 4-70 (422)
No 1
>PTZ00331 alpha/beta hydrolase; Provisional
Probab=100.00 E-value=1.4e-40 Score=304.36 Aligned_cols=203 Identities=39% Similarity=0.679 Sum_probs=173.5
Q ss_pred cCCCCeEEEEecccccccC-CCccccccccCCChHHHHHHHHHHHHHhccCcEEEEeccCCCCccchhhhhhhhhccCCC
Q psy8942 32 IVRPKSALLVINVQNDFVS-GTLNMSQRSAKQNGLQVIEPINKLLDTVNFNAVFYSLDWHPSNHISFIDNIKLRKIHYTS 110 (340)
Q Consensus 32 i~~~ktALLVIDmQndF~~-G~l~~~~~~~~~~~~~iv~~I~~Li~~aR~~~Vi~t~d~h~~~h~~f~~~~~~r~~~p~s 110 (340)
+++.++|||||||||||++ |.+.. ++..++++++++|+++++...|++++++|++.|..|..++.+.+
T Consensus 8 ~~~~~~ALlVIDmQndF~~~g~l~~------~~~~~iv~~i~~l~~~~~~~~Vi~~~d~h~~~~~~~~~~~~~~~----- 76 (212)
T PTZ00331 8 VSSTNDALIIVDVQNDFCKGGSLAV------PDAEEVIPVINQVRQSHHFDLVVATQDWHPPNHISFASNHGKPK----- 76 (212)
T ss_pred cCCCCCEEEEEcCCCCCCCCCccCC------CCHHHHHHHHHHHHHhcCCCEEEEecCcCCCCCcChhhcCCCCC-----
Confidence 5678999999999999996 66543 57899999999999976666899999999998887754322111
Q ss_pred CCCCCCccccccccccCCCccccccCCccccCCCCcccccccccccCCceEEEcCCCCCCCcccccccccccCCchHHHH
Q psy8942 111 TVQPEDAQTYDTVVFDGDTPMKQKLWPRHCVQDSWGAELHKDLKIVDNAIKVYMGTDPEEDSYSVFWDSKKLKRTSLAKQ 190 (340)
Q Consensus 111 ~l~~~~~~~~~~v~~~g~~~~~~~~wp~hc~~Gt~g~el~~eL~p~~~d~vi~K~~~p~~~r~SaF~~~~~~~~t~L~~~ 190 (340)
+.+ .+.....||+||++|+||++++|+|.+.++++++.|+.+|++++||+|. .++..+|+|+.+
T Consensus 77 -~~~--------------~~~~~~~~~~h~~~gs~g~~i~~~L~~~~~~~vi~K~~~~~~~~~saF~-~~~~~~t~L~~~ 140 (212)
T PTZ00331 77 -ILP--------------DGTTQGLWPPHCVQGTKGAQLHKDLVVERIDIIIRKGTNRDVDSYSAFD-NDKGSKTGLAQI 140 (212)
T ss_pred -ccc--------------CCCccCCCcccccCCCCcccCChhhccCCCcEEEECCCCCCCceecCcc-CCCCCCchHHHH
Confidence 000 0112457999999999999999999999999999999988999999991 111129999999
Q ss_pred HHhCCCcEEEEEeecCChhHHHHHHHHHhCCCeEEEECCCCCCCCHHHHHHHHHHHHhcCcEEecHHHHHH
Q psy8942 191 LEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGMDLDDIERTRNTILENYGSCVQSDEVKS 261 (340)
Q Consensus 191 L~~~gi~~lii~Gv~T~~CV~~Ta~dA~~~Gy~V~vv~Da~~s~~~~~~~~al~~l~~~g~~v~ts~ev~~ 261 (340)
|+++|+++|+|||++||+||.+|+++|.++||+|+|++|||++++++.|+++++.|...|+.|+++++++.
T Consensus 141 L~~~gi~~lvi~G~~t~~CV~~Ta~~a~~~g~~v~vv~Da~~~~~~~~~~~al~~~~~~g~~v~~~~~~~~ 211 (212)
T PTZ00331 141 LKAHGVRRVFICGLAFDFCVLFTALDAVKLGFKVVVLEDATRAVDPDAISKQRAELLEAGVILLTSSDLVA 211 (212)
T ss_pred HHHCCCCEEEEEEeccCHHHHHHHHHHHHCCCEEEEeCcCccCCCHHHHHHHHHHHHHCCCEEEeHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999864
No 2
>PRK11609 nicotinamidase/pyrazinamidase; Provisional
Probab=100.00 E-value=1.1e-39 Score=297.61 Aligned_cols=204 Identities=34% Similarity=0.544 Sum_probs=169.5
Q ss_pred CCeEEEEecccccccC-CCccccccccCCChHHHHHHHHHHHHHhccC--cEEEEeccCCCCccchhhhhhhhhccCCCC
Q psy8942 35 PKSALLVINVQNDFVS-GTLNMSQRSAKQNGLQVIEPINKLLDTVNFN--AVFYSLDWHPSNHISFIDNIKLRKIHYTST 111 (340)
Q Consensus 35 ~ktALLVIDmQndF~~-G~l~~~~~~~~~~~~~iv~~I~~Li~~aR~~--~Vi~t~d~h~~~h~~f~~~~~~r~~~p~s~ 111 (340)
+|+|||||||||||++ |.++. ++.+++++++++|+++||.. +|||++++|+.+|..|..+....
T Consensus 1 m~~ALlvID~Qndf~~~g~l~~------~~~~~~v~~i~~l~~~ar~~g~pVi~~~~~~~~~~~~~~~~~~~~------- 67 (212)
T PRK11609 1 MKRALLLVDLQNDFCAGGALAV------PEGDSTIDVANRLIDWCQSRGIPVIASQDWHPANHGSFASNHGAE------- 67 (212)
T ss_pred CCcEEEEEeCCccCCCCCcccc------CCHHHHHHHHHHHHHHHHhcCCeEEEEeccCCCCCcchhhcCCCC-------
Confidence 3789999999999996 55533 67899999999999999874 89999999998776654322100
Q ss_pred CCCCCccccccccccCCCccccccCCccccCCCCcccccccccccCCceEEEcCCCCCCCcccccccccccCCchHHHHH
Q psy8942 112 VQPEDAQTYDTVVFDGDTPMKQKLWPRHCVQDSWGAELHKDLKIVDNAIKVYMGTDPEEDSYSVFWDSKKLKRTSLAKQL 191 (340)
Q Consensus 112 l~~~~~~~~~~v~~~g~~~~~~~~wp~hc~~Gt~g~el~~eL~p~~~d~vi~K~~~p~~~r~SaF~~~~~~~~t~L~~~L 191 (340)
.+....+.+ ..+.+||+||++|++|++++++|.+.++|.++.|+.+|..++||+|+++....+|+|+.+|
T Consensus 68 -------~~~~~~~~~---~~~~~~~~~~~~gt~g~el~~~l~~~~~d~vi~K~~~~~~~~~SaF~~~~~~~~T~L~~~L 137 (212)
T PRK11609 68 -------PGTQGELDG---LPQTWWPDHCVQNSEGAALHPLLNQKAIDAVFHKGENPLIDSYSAFFDNGHRQKTALDDWL 137 (212)
T ss_pred -------CccccccCC---cccccCcccccCCCCcCccChhhcccCCCEEEECCCCCCCcccccccCCCCCCCccHHHHH
Confidence 011101111 1235799999999999999999999999999999877777899999843333469999999
Q ss_pred HhCCCcEEEEEeecCChhHHHHHHHHHhCCCeEEEECCCCCCCC--HHHHHHHHHHHHhcCcEEecHHHHHH
Q psy8942 192 EAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGMD--LDDIERTRNTILENYGSCVQSDEVKS 261 (340)
Q Consensus 192 ~~~gi~~lii~Gv~T~~CV~~Ta~dA~~~Gy~V~vv~Da~~s~~--~~~~~~al~~l~~~g~~v~ts~ev~~ 261 (340)
+++|+++|+|+|++|++||.+||++|+++||+|+|++|||++++ ++.|+.+++.|...|+.|+++++++.
T Consensus 138 ~~~gi~~lii~G~~T~~CV~~Ta~dA~~~gy~v~v~~Da~a~~~~~~~~~~~al~~~~~~~~~v~t~~~~~~ 209 (212)
T PRK11609 138 REHGITELIVMGLATDYCVKFTVLDALALGYQVNVITDGCRGVNLQPQDSAHAFMEMSAAGATLYTLADWEE 209 (212)
T ss_pred HHcCCCEEEEEEeccCHHHHHHHHHHHHCCCEEEEEeeccCCCCCCchhHHHHHHHHHHCCCEEEEHHHHHh
Confidence 99999999999999999999999999999999999999999985 78899999999999999999999865
No 3
>cd01011 nicotinamidase Nicotinamidase/pyrazinamidase (PZase). Nicotinamidase, a ubiquitous enzyme in prokaryotes, converts nicotinamide to nicotinic acid (niacin) and ammonia, which in turn can be recycled to make nicotinamide adenine dinucleotide (NAD). The same enzyme is also called pyrazinamidase, because in converts the tuberculosis drug pyrazinamide (PZA) into its active form pyrazinoic acid (POA).
Probab=100.00 E-value=4.2e-39 Score=290.92 Aligned_cols=195 Identities=41% Similarity=0.647 Sum_probs=163.9
Q ss_pred CeEEEEecccccccC-CCccccccccCCChHHHHHHHHHHHHHhccCcEEEEeccCCCCccchhhhhhhhhccCCCCCCC
Q psy8942 36 KSALLVINVQNDFVS-GTLNMSQRSAKQNGLQVIEPINKLLDTVNFNAVFYSLDWHPSNHISFIDNIKLRKIHYTSTVQP 114 (340)
Q Consensus 36 ktALLVIDmQndF~~-G~l~~~~~~~~~~~~~iv~~I~~Li~~aR~~~Vi~t~d~h~~~h~~f~~~~~~r~~~p~s~l~~ 114 (340)
.+|||||||||||++ |.++. ++.++++++|++|++++|..+|||++++|++++..|...+.+.+..
T Consensus 1 ~tALlvID~Qndf~~~g~l~~------~~~~~~v~~i~~l~~~arg~~Vi~~~~~h~~~~~~~~~~~~~~~~~------- 67 (196)
T cd01011 1 TDALLVVDVQNDFCPGGALAV------PGGDAIVPLINALLSLFQYDLVVATQDWHPANHASFASNHPGQMPF------- 67 (196)
T ss_pred CceEEEEcCCCCCCCCCcccC------CCHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCcChhhcCCCCCCc-------
Confidence 369999999999997 66543 5789999999999999995589999999988777666543221110
Q ss_pred CCccccccccccCCCccccccCCccccCCCCcccccccccccCCceEEEcCCCCCCCcccccccccccCCchHHHHHHhC
Q psy8942 115 EDAQTYDTVVFDGDTPMKQKLWPRHCVQDSWGAELHKDLKIVDNAIKVYMGTDPEEDSYSVFWDSKKLKRTSLAKQLEAK 194 (340)
Q Consensus 115 ~~~~~~~~v~~~g~~~~~~~~wp~hc~~Gt~g~el~~eL~p~~~d~vi~K~~~p~~~r~SaF~~~~~~~~t~L~~~L~~~ 194 (340)
. ...+.....||+||++||||++++++|.+.++|.++.|+..|++++||+|++.....+|+|..+|+++
T Consensus 68 --~---------~~~~~~~~~~~~~~~~gs~g~~i~~~l~~~~~d~vi~K~~~~~~~~~saF~~~~~~~~t~L~~~L~~~ 136 (196)
T cd01011 68 --I---------TLPPGPQVLWPDHCVQGTPGAELHPGLPVPDIDLIVRKGTNPDIDSYSAFFDNDRRSSTGLAEYLRER 136 (196)
T ss_pred --c---------ccCCCCcCcCCCccCCCCCCCccCcccccCCCCEEEECCCCCCCceeeeeecCCccCchhHHHHHHHC
Confidence 0 00112245799999999999999999999889999999988888999999832222239999999999
Q ss_pred CCcEEEEEeecCChhHHHHHHHHHhCCCeEEEECCCCCCCCHHHHHHHHHHHHhcCcEEe
Q psy8942 195 KVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGMDLDDIERTRNTILENYGSCV 254 (340)
Q Consensus 195 gi~~lii~Gv~T~~CV~~Ta~dA~~~Gy~V~vv~Da~~s~~~~~~~~al~~l~~~g~~v~ 254 (340)
|+++|+|||++|++||.+|+++|+++||+|+|++|||++++.+.|+.+|+.|...|+.++
T Consensus 137 ~i~~lii~G~~t~~CV~~T~~~a~~~g~~v~v~~Da~~~~~~~~~~~al~~~~~~G~~i~ 196 (196)
T cd01011 137 GIDRVDVVGLATDYCVKATALDALKAGFEVRVLEDACRAVDPETIERAIEEMKEAGVVLV 196 (196)
T ss_pred CCCEEEEEEecccHHHHHHHHHHHHCCCEEEEeccccCCCCHHHHHHHHHHHHHccCEEC
Confidence 999999999999999999999999999999999999999999999999999999888763
No 4
>PRK11440 putative hydrolase; Provisional
Probab=100.00 E-value=3.4e-36 Score=269.79 Aligned_cols=184 Identities=17% Similarity=0.305 Sum_probs=155.2
Q ss_pred ccCCCCeEEEEecccccccCCCccccccccCCChHHHHHHHHHHHHHhccC--cEEEEeccCCCCccchhhhhhhhhccC
Q psy8942 31 VIVRPKSALLVINVQNDFVSGTLNMSQRSAKQNGLQVIEPINKLLDTVNFN--AVFYSLDWHPSNHISFIDNIKLRKIHY 108 (340)
Q Consensus 31 ~i~~~ktALLVIDmQndF~~G~l~~~~~~~~~~~~~iv~~I~~Li~~aR~~--~Vi~t~d~h~~~h~~f~~~~~~r~~~p 108 (340)
.++++++|||||||||+|+++... ..+..++++++++|+++||.. ||||+++.|.+....+.
T Consensus 3 ~l~~~~~ALlvID~Qn~f~~~~~~------~~~~~~~i~~i~~l~~~ar~~g~pVi~~~~~~~~~~~~~~---------- 66 (188)
T PRK11440 3 ELNAKTTALVVIDLQEGILPFAGG------PHTADEVVARAARLAAKFRASGSPVVLVRVGWSADYAEAL---------- 66 (188)
T ss_pred CCCCCCEEEEEEecccccccCCCC------cchHHHHHHHHHHHHHHHHHcCCcEEEEecccCCchhhhc----------
Confidence 567889999999999999963211 135789999999999999875 89999976644211100
Q ss_pred CCCCCCCCccccccccccCCCccccccCCccccCCCCcccccccccccCCceEEEcCCCCCCCcccccccccccCCchHH
Q psy8942 109 TSTVQPEDAQTYDTVVFDGDTPMKQKLWPRHCVQDSWGAELHKDLKIVDNAIKVYMGTDPEEDSYSVFWDSKKLKRTSLA 188 (340)
Q Consensus 109 ~s~l~~~~~~~~~~v~~~g~~~~~~~~wp~hc~~Gt~g~el~~eL~p~~~d~vi~K~~~p~~~r~SaF~~~~~~~~t~L~ 188 (340)
+.+ .....++||..|++ ++++++|+|.++|.++.| .+||+|+ +|+|+
T Consensus 67 ------------------~~~--~~~~~~~~~~~~~~-~~~~~~l~~~~~d~vi~K------~~~saF~------~T~L~ 113 (188)
T PRK11440 67 ------------------KQP--VDAPSPAKVLPENW-WQHPAALGKTDSDIEVTK------RQWGAFY------GTDLE 113 (188)
T ss_pred ------------------cCc--ccccccccccCCcc-cccCcccCCCCCCEEEec------CCcCCCC------CCCHH
Confidence 000 01134567888887 799999999999999999 5899998 99999
Q ss_pred HHHHhCCCcEEEEEeecCChhHHHHHHHHHhCCCeEEEECCCCCCCCHHHHHHHHHHHHhcCcEEecHHHHHHHH
Q psy8942 189 KQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGMDLDDIERTRNTILENYGSCVQSDEVKSMV 263 (340)
Q Consensus 189 ~~L~~~gi~~lii~Gv~T~~CV~~Ta~dA~~~Gy~V~vv~Da~~s~~~~~~~~al~~l~~~g~~v~ts~ev~~~l 263 (340)
.+|+++|+++|+|+|+.||+||.+||++|+++||+|+|++|||++++++.|+.+++.+...++.|+++++++..|
T Consensus 114 ~~L~~~gi~~lii~Gv~T~~CV~~Ta~~A~~~gy~v~vv~Da~as~~~~~h~~al~~~~~~~a~v~~~~~~~~~l 188 (188)
T PRK11440 114 LQLRRRGIDTIVLCGISTNIGVESTARNAWELGFNLVIAEDACSAASAEQHQNSMNHIFPRIARVRSVEEILNAL 188 (188)
T ss_pred HHHHHCCCCEEEEeeechhHHHHHHHHHHHHCCCEEEEechhhcCCCHHHHHHHHHHHHhheeEEeeHHHHHhhC
Confidence 999999999999999999999999999999999999999999999999999999999998899999999998764
No 5
>KOG4003|consensus
Probab=100.00 E-value=1e-36 Score=264.98 Aligned_cols=211 Identities=32% Similarity=0.549 Sum_probs=176.0
Q ss_pred CeEEEEecccccccCCCccccccccCCChHHHHHHHHHHHHHhcc--CcEEEEeccCCCCccchhhhhhhhhccCCCCCC
Q psy8942 36 KSALLVINVQNDFVSGTLNMSQRSAKQNGLQVIEPINKLLDTVNF--NAVFYSLDWHPSNHISFIDNIKLRKIHYTSTVQ 113 (340)
Q Consensus 36 ktALLVIDmQndF~~G~l~~~~~~~~~~~~~iv~~I~~Li~~aR~--~~Vi~t~d~h~~~h~~f~~~~~~r~~~p~s~l~ 113 (340)
+.+||||||||||++|.+.+. ..++....+.++++|+..+.. ..|++|.||||-+|.+|..+++.|.+.|...
T Consensus 1 ~~~l~vvd~qndfi~~~~~~~---s~~E~~~~i~Pi~~lLq~~d~dw~~Vv~TKDwHP~~HiSF~~~h~~~~p~~~~t-- 75 (223)
T KOG4003|consen 1 MKTLIVVDMQNDFISPLGSLT---SVPEGEELINPISDLLQDADRDWHRVVVTKDWHPSRHISFAKNHKDKEPYSTYT-- 75 (223)
T ss_pred CceEEEEeccccccccccccc---cCCCchhhhccHHHHHHhcccccceEEEecccCcccceehhhhccCCCCCCCCc--
Confidence 358999999999999654432 234556666667777777654 4899999999999999999988766544322
Q ss_pred CCCccccccccccCCCccccccCCccccCCCCcccccccccccCCceEEEcCCCCCCCcccccccccccCCchHHHHHHh
Q psy8942 114 PEDAQTYDTVVFDGDTPMKQKLWPRHCVQDSWGAELHKDLKIVDNAIKVYMGTDPEEDSYSVFWDSKKLKRTSLAKQLEA 193 (340)
Q Consensus 114 ~~~~~~~~~v~~~g~~~~~~~~wp~hc~~Gt~g~el~~eL~p~~~d~vi~K~~~p~~~r~SaF~~~~~~~~t~L~~~L~~ 193 (340)
-...++|..|.+ +..+||.||++.|||.++++++-....+.+|.||.||+.+.||+|++++++..|+|.++|++
T Consensus 76 ~~~~~~~d~V~~------~~vl~p~HCv~ntwG~d~~~~~~~~~~~~~I~KG~D~~~eSYSaF~D~~GR~kt~L~~~L~k 149 (223)
T KOG4003|consen 76 YHSPRPGDDVTQ------EGILWPVHCVKNTWGVDQIMDQVVTKHIKIIDKGFDTDRESYSAFHDIWGRHKTDLNKYLEK 149 (223)
T ss_pred ccCCCcCCchhe------eeecchhhhhccCCCCCcchhhhhhhheeecccCcchhHHHHHHHhhhcccchhhHHHHHHH
Confidence 123334444433 33589999999999999999999888889999999999999999999999999999999999
Q ss_pred CCCcEEEEEeecCChhHHHHHHHHHhCCCeEEEECCCCCCCCHHHHHHHHHHHHhcCcEEecHH
Q psy8942 194 KKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGMDLDDIERTRNTILENYGSCVQSD 257 (340)
Q Consensus 194 ~gi~~lii~Gv~T~~CV~~Ta~dA~~~Gy~V~vv~Da~~s~~~~~~~~al~~l~~~g~~v~ts~ 257 (340)
.+|+.|+|+|+++|+||.+||++|...||..+|+..|+.+.+.+.++.+.+..+..+..+++-.
T Consensus 150 ~~Id~V~IAGvA~DICVk~TaL~A~~~~y~t~vI~E~~~Gsst~si~~~~~~F~k~k~e~IS~~ 213 (223)
T KOG4003|consen 150 HHIDEVYIAGVALDICVKATALSAAELGYKTTVILEYTRGSSTPSISDDPEVFNKVKEELISHN 213 (223)
T ss_pred cCCCeEEEeehhhHHHHHHHHhhHHHhCcceeeehhhhccCCCcccccCHHHHHHhhHHHhhcc
Confidence 9999999999999999999999999999999999999999999999988888887776655543
No 6
>PF00857 Isochorismatase: Isochorismatase family; InterPro: IPR000868 This is a family of hydrolase enzymes. Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate (3.3.2.1 from EC).; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1XN4_A 3KL2_F 1YZV_A 3IRV_A 1IM5_A 1ILW_A 3PL1_A 1NF9_A 1NF8_A 1X9G_A ....
Probab=100.00 E-value=1.2e-35 Score=261.15 Aligned_cols=172 Identities=37% Similarity=0.595 Sum_probs=149.3
Q ss_pred eEEEEecccccccCCCccccccccCCChHHHHHHHHHHHHHhccC--cEEEEeccCCCCccchhhhhhhhhccCCCCCCC
Q psy8942 37 SALLVINVQNDFVSGTLNMSQRSAKQNGLQVIEPINKLLDTVNFN--AVFYSLDWHPSNHISFIDNIKLRKIHYTSTVQP 114 (340)
Q Consensus 37 tALLVIDmQndF~~G~l~~~~~~~~~~~~~iv~~I~~Li~~aR~~--~Vi~t~d~h~~~h~~f~~~~~~r~~~p~s~l~~ 114 (340)
||||||||||+|+.+.+. .++.+++++++++|++++|.. +|+++++.|...+..
T Consensus 1 TaLlvID~Q~~f~~~~~~------~~~~~~~i~~i~~l~~~~r~~~~~Vi~~~~~~~~~~~~------------------ 56 (174)
T PF00857_consen 1 TALLVIDMQNDFINGSLA------PPNAEAIIPNINRLLDAARAAGVPVIHTRDIHDSPHWS------------------ 56 (174)
T ss_dssp EEEEEES-BHHHHTSTTT------STTHHHHHHHHHHHHHHHHHTTEEEEEEEESBSTTTTT------------------
T ss_pred CEEEEEeChhhhhcCCcc------ccCHHHHHHHHHHHHHHHHHhCCCeEEEEeeecccccc------------------
Confidence 799999999999954432 368999999999999999875 799999877621110
Q ss_pred CCccccccccccCCCccccccCCccccCCCCcccccccccccCCceEEEcCCCCCCCcccccccccccCCchHHHHHHhC
Q psy8942 115 EDAQTYDTVVFDGDTPMKQKLWPRHCVQDSWGAELHKDLKIVDNAIKVYMGTDPEEDSYSVFWDSKKLKRTSLAKQLEAK 194 (340)
Q Consensus 115 ~~~~~~~~v~~~g~~~~~~~~wp~hc~~Gt~g~el~~eL~p~~~d~vi~K~~~p~~~r~SaF~~~~~~~~t~L~~~L~~~ 194 (340)
.......|+.||..|++|++++++|+|.++|.+|.| .+||+|. +|+|.++|+++
T Consensus 57 --------------~~~~~~~~~~~~~~g~~~~~l~~~l~~~~~~~vi~K------~~~saf~------~t~L~~~L~~~ 110 (174)
T PF00857_consen 57 --------------GPFEPKPWPPHCIPGSPGAELVPELAPQPGDPVIEK------NRYSAFF------GTDLDEILRKR 110 (174)
T ss_dssp --------------TSGGHSCHTSCSBTTSGGGSBHGGGHCHTTSEEEEE------SSSSTTT------TSSHHHHHHHT
T ss_pred --------------cccccccccccccCCCCccceeeEeecccccceEEe------ecccccc------ccccccccccc
Confidence 001224577899999999999999999999999999 4899998 99999999999
Q ss_pred CCcEEEEEeecCChhHHHHHHHHHhCCCeEEEECCCCCCCCHHHHHHHHHHHHhcCcEEecHHH
Q psy8942 195 KVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGMDLDDIERTRNTILENYGSCVQSDE 258 (340)
Q Consensus 195 gi~~lii~Gv~T~~CV~~Ta~dA~~~Gy~V~vv~Da~~s~~~~~~~~al~~l~~~g~~v~ts~e 258 (340)
|+++|+|+|+.|++||.+|+++|+++||+|+|++|||++++++.|+.+++.|.+.|+.|++++|
T Consensus 111 gi~~vil~G~~t~~CV~~Ta~~a~~~g~~v~v~~Da~~~~~~~~h~~~l~~l~~~~~~v~t~~~ 174 (174)
T PF00857_consen 111 GIDTVILCGVATDVCVLATARDAFDRGYRVIVVEDACASYSPEAHEAALEELRKRGAEVITSAE 174 (174)
T ss_dssp TESEEEEEEESTTTHHHHHHHHHHHTT-EEEEEEEEEEBSSHHHHHHHHHHHHHHTSEEE-HHH
T ss_pred ccceEEEcccccCcEEehhHHHHHHCCCEEEEEChhhcCCCHHHHHHHHHHHHhCCCEEEeCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999986
No 7
>PLN02621 nicotinamidase
Probab=100.00 E-value=3.5e-35 Score=265.54 Aligned_cols=178 Identities=22% Similarity=0.313 Sum_probs=155.1
Q ss_pred ccCCCCeEEEEecccccccCCCccccccccCCChHHHHHHHHHHHHHhccC--cEEEEeccCCCCccchhhhhhhhhccC
Q psy8942 31 VIVRPKSALLVINVQNDFVSGTLNMSQRSAKQNGLQVIEPINKLLDTVNFN--AVFYSLDWHPSNHISFIDNIKLRKIHY 108 (340)
Q Consensus 31 ~i~~~ktALLVIDmQndF~~G~l~~~~~~~~~~~~~iv~~I~~Li~~aR~~--~Vi~t~d~h~~~h~~f~~~~~~r~~~p 108 (340)
.++++++|||+|||||+|++ ...++++++++|++.+|.. +|++++++|..... +
T Consensus 15 ~~~~~~~aLlvID~Q~~f~~------------~~~~~v~~i~~Ll~~ar~~~~pVi~t~~~~~~~~~-~----------- 70 (197)
T PLN02621 15 DPDPKQAALLVIDMQNYFSS------------MAEPILPALLTTIDLCRRASIPVFFTRHSHKSPSD-Y----------- 70 (197)
T ss_pred CCCCCCEEEEEEeChhhhhh------------hHHHHHHHHHHHHHHHHHCCCcEEEEeccCCCcch-h-----------
Confidence 46778999999999999974 1468999999999999874 89999988742100 0
Q ss_pred CCCCCCCCccccccccccCCCccccccCCcc-ccCCCCcccccccccc-cCCceEEEcCCCCCCCcccccccccccCCch
Q psy8942 109 TSTVQPEDAQTYDTVVFDGDTPMKQKLWPRH-CVQDSWGAELHKDLKI-VDNAIKVYMGTDPEEDSYSVFWDSKKLKRTS 186 (340)
Q Consensus 109 ~s~l~~~~~~~~~~v~~~g~~~~~~~~wp~h-c~~Gt~g~el~~eL~p-~~~d~vi~K~~~p~~~r~SaF~~~~~~~~t~ 186 (340)
+ .....||.| |.+|++|++++++|+| .+++.++.| .+||+|+ +|+
T Consensus 71 ---------~------------~~~~~~~~~~~~~gs~g~~i~~~L~~~~~~~~vi~K------~~~saf~------~t~ 117 (197)
T PLN02621 71 ---------G------------MLGEWWDGDLILDGTTEAELMPEIGRVTGPDEVVEK------STYSAFY------NTR 117 (197)
T ss_pred ---------h------------hhhhhcCCccccCCCCccccchhccCCCCCCEEEEC------CCcCCCC------CCc
Confidence 0 001246666 8899999999999998 678899999 4899998 999
Q ss_pred HHHHHHhCCCcEEEEEeecCChhHHHHHHHHHhCCCeEEEECCCCCCCCHHHHHHHHHHHHhcCcEEecHHHHHHHHhc
Q psy8942 187 LAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGMDLDDIERTRNTILENYGSCVQSDEVKSMVEG 265 (340)
Q Consensus 187 L~~~L~~~gi~~lii~Gv~T~~CV~~Ta~dA~~~Gy~V~vv~Da~~s~~~~~~~~al~~l~~~g~~v~ts~ev~~~l~~ 265 (340)
|+.+|+++|+++|+|+|++||+||.+|+++|+++||+|+|++|||++++++.|+.+++.|...++.|+++++++.+|..
T Consensus 118 L~~~L~~~gi~~lvi~Gv~T~~CV~~Ta~~a~~~gy~v~v~~Da~as~~~~~h~~al~~~~~~~~~v~~~~~~~~~~~~ 196 (197)
T PLN02621 118 LEERLRKIGVKEVIVTGVMTNLCCETTAREAFVRGFRVFFSTDATATANEELHEATLKNLAYGFAYLVDCDRLEAGLLK 196 (197)
T ss_pred HHHHHHHCCCCEEEEEecccchhHHHHHHHHHHCCCEEEEeccccCCCCHHHHHHHHHHHHhhceEeecHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999988753
No 8
>TIGR03614 RutB pyrimidine utilization protein B. RL Proc Natl Acad Sci U S A. 2006 Mar 28;103(13):5114-9. Epub 2006 Mar 15.
Probab=100.00 E-value=1.3e-34 Score=267.11 Aligned_cols=210 Identities=19% Similarity=0.263 Sum_probs=162.9
Q ss_pred hhccCCCCeEEEEecccccccC--CCccccccccCCChHHHHHHHHHHHHHhccC--cEEEEeccCCCCccchhhhhhhh
Q psy8942 29 IKVIVRPKSALLVINVQNDFVS--GTLNMSQRSAKQNGLQVIEPINKLLDTVNFN--AVFYSLDWHPSNHISFIDNIKLR 104 (340)
Q Consensus 29 ~~~i~~~ktALLVIDmQndF~~--G~l~~~~~~~~~~~~~iv~~I~~Li~~aR~~--~Vi~t~d~h~~~h~~f~~~~~~r 104 (340)
..+++++++|||||||||||++ |.+.... .......++++++++|++.||.. +|||+++.|.++... . .+
T Consensus 8 ~~~~~~~~tALlvID~Qn~f~~~~~~~~~~~-~~~~~~~~~i~~i~~l~~~aR~~g~pVI~~~~~~~~~~~~---~--~~ 81 (226)
T TIGR03614 8 PITLDPEQTALIVVDMQNAYATPGGYLDLAG-FDVSGTKPVIENIKKAVTAARAAGIQVIYFQNGWDNDYVE---A--GG 81 (226)
T ss_pred ccccCCCCEEEEEEechhhhhCCCccccccc-CcchhHHHHHHHHHHHHHHHHHcCCEEEEEecccChhhhh---c--cC
Confidence 3457889999999999999996 3331100 12356899999999999999875 899999877543210 0 00
Q ss_pred hccCCCCCCCCCccccccc-cccCCCccccccCCccccCCCCcccccccccccCCceEEEcCCCCCCCcccccccccccC
Q psy8942 105 KIHYTSTVQPEDAQTYDTV-VFDGDTPMKQKLWPRHCVQDSWGAELHKDLKIVDNAIKVYMGTDPEEDSYSVFWDSKKLK 183 (340)
Q Consensus 105 ~~~p~s~l~~~~~~~~~~v-~~~g~~~~~~~~wp~hc~~Gt~g~el~~eL~p~~~d~vi~K~~~p~~~r~SaF~~~~~~~ 183 (340)
+++ +.|... .+ ........+++.+|.+|+||++++++|.|.++|.++.| ++||+|+
T Consensus 82 ---~~~-------~~~~~~~~~-~~~~~~~~~~~~~~~~g~~g~~~~~~l~p~~~d~vi~K------~~~saF~------ 138 (226)
T TIGR03614 82 ---PGS-------PNWHKSNAL-KTMRKRPELQGKLLAKGTWDYELVDELQPQPGDIVLPK------PRYSGFF------ 138 (226)
T ss_pred ---CCc-------ccccccccc-cccccCcccccceeecCCCCcccCcccCCCCCCEEEeC------CCcCCCC------
Confidence 000 000000 00 00000011234568899999999999999999999999 5999998
Q ss_pred CchHHHHHHhCCCcEEEEEeecCChhHHHHHHHHHhCCCeEEEECCCCCCCCH-HHHHHHHHHHHhcCcEEecHHHHHHH
Q psy8942 184 RTSLAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGMDL-DDIERTRNTILENYGSCVQSDEVKSM 262 (340)
Q Consensus 184 ~t~L~~~L~~~gi~~lii~Gv~T~~CV~~Ta~dA~~~Gy~V~vv~Da~~s~~~-~~~~~al~~l~~~g~~v~ts~ev~~~ 262 (340)
+|+|+.+|+++||++|||+|+.||+||.+|+++|+++||+|+|++|||++.+. +.|+.++..|...++.|+++++++..
T Consensus 139 ~T~L~~~Lr~~gI~~lvi~Gv~T~~CV~sTar~A~~~Gy~v~vv~Da~a~~~~~~~h~~~l~~l~~~~~~v~~~~~~~~~ 218 (226)
T TIGR03614 139 NTPLDSMLRARGIRNLVFTGIATNVCVESTLRDGFHLEYFGVVLEDATHQAGPDFMQKAALYNIETFFGWVSDVADFCGT 218 (226)
T ss_pred CCCHHHHHHHCCCCEEEEeccCccHhHHHHHHHHHHCCCEEEEechhccCCCchHHHHHHHHHHHhHheeeecHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999986 58999999999999999999999999
Q ss_pred HhcCC
Q psy8942 263 VEGKD 267 (340)
Q Consensus 263 l~~~~ 267 (340)
|.+.+
T Consensus 219 l~~~~ 223 (226)
T TIGR03614 219 FSQNA 223 (226)
T ss_pred HhhcC
Confidence 87543
No 9
>cd01015 CSHase N-carbamoylsarcosine amidohydrolase (CSHase) hydrolyzes N-carbamoylsarcosine to sarcosine, carbon dioxide and ammonia. CSHase is involved in one of the two alternative pathways for creatinine degradation to glycine in microorganisms.This CSHase-containing pathway degrades creatinine via N-methylhydantoin N-carbamoylsarcosine and sarcosine to glycine. Enzymes of this pathway are used in the diagnosis for renal disfunction, for determining creatinine levels in urine and serum.
Probab=100.00 E-value=8.9e-35 Score=258.68 Aligned_cols=173 Identities=24% Similarity=0.346 Sum_probs=148.6
Q ss_pred EEEEecccccccC-CCccccccccCCChHHHHHHHHHHHHHhccC--cEEEEeccCCCCccchhhhhhhhhccCCCCCCC
Q psy8942 38 ALLVINVQNDFVS-GTLNMSQRSAKQNGLQVIEPINKLLDTVNFN--AVFYSLDWHPSNHISFIDNIKLRKIHYTSTVQP 114 (340)
Q Consensus 38 ALLVIDmQndF~~-G~l~~~~~~~~~~~~~iv~~I~~Li~~aR~~--~Vi~t~d~h~~~h~~f~~~~~~r~~~p~s~l~~ 114 (340)
|||||||||+|++ |.+.. +...++++|+++|++.+|.. +|++++++|...+..
T Consensus 1 ALlvID~Q~~f~~~~~~~~------~~~~~~~~ni~~l~~~ar~~~~~Vi~~~~~~~~~~~~------------------ 56 (179)
T cd01015 1 ALLVIDLVEGYTQPGSYLA------PGIAAALENVQRLLAAARAAGVPVIHTTVVYDPDGAD------------------ 56 (179)
T ss_pred CEEEEEeecceeCCCCccc------cchHHHHHHHHHHHHHHHHcCCCEEEEEeeECCccCc------------------
Confidence 7999999999996 54432 46789999999999999874 899999876543110
Q ss_pred CCccccccccccCCCccccccCC--ccccCCCCcccccccccccCCceEEEcCCCCCCCcccccccccccCCchHHHHHH
Q psy8942 115 EDAQTYDTVVFDGDTPMKQKLWP--RHCVQDSWGAELHKDLKIVDNAIKVYMGTDPEEDSYSVFWDSKKLKRTSLAKQLE 192 (340)
Q Consensus 115 ~~~~~~~~v~~~g~~~~~~~~wp--~hc~~Gt~g~el~~eL~p~~~d~vi~K~~~p~~~r~SaF~~~~~~~~t~L~~~L~ 192 (340)
.+.|. ..|| .++.+|++|++++++|.|.++|+++.| .+||+|+ +|+|+.+|+
T Consensus 57 --~~~~~------------~~~~~~~~~~~gs~~~~~~~~l~~~~~~~v~~K------~~~saF~------~t~L~~~L~ 110 (179)
T cd01015 57 --GGLWA------------RKVPAMSDLVEGSPLAAICDELAPQEDEMVLVK------KYASAFF------GTSLAATLT 110 (179)
T ss_pred --cchhh------------hcccccccccCCCCccccccccCCCCCCEEEec------CccCCcc------CCcHHHHHH
Confidence 00010 0122 246789999999999999999999999 4899998 999999999
Q ss_pred hCCCcEEEEEeecCChhHHHHHHHHHhCCCeEEEECCCCCCCCHHHHHHHHHHHHhcCcEEecHHHHH
Q psy8942 193 AKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGMDLDDIERTRNTILENYGSCVQSDEVK 260 (340)
Q Consensus 193 ~~gi~~lii~Gv~T~~CV~~Ta~dA~~~Gy~V~vv~Da~~s~~~~~~~~al~~l~~~g~~v~ts~ev~ 260 (340)
++|+++|+|+|+.||+||++||++|+++||+|+|++|||++.+++.|+.++..|...++.|+++++++
T Consensus 111 ~~gi~~vvi~G~~t~~CV~~Ta~~A~~~Gy~v~vv~Da~a~~~~~~h~~al~~l~~~~~~v~~t~~~~ 178 (179)
T cd01015 111 ARGVDTLIVAGCSTSGCIRATAVDAMQHGFRPIVVRECVGDRAPAPHEANLFDIDNKYGDVVSTDDAL 178 (179)
T ss_pred HcCCCEEEEeeecccHhHHHHHHHHHHCCCeEEEeeccccCCCHHHHHHHHHHHHhhceeeccHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999986
No 10
>cd01013 isochorismatase Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase, catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of a vinyl ether, an uncommon reaction in biological systems. Isochorismatase is part of the phenazine biosynthesis pathway. Phenazines are antimicrobial compounds that provide the competitive advantage for certain bacteria.
Probab=100.00 E-value=8.3e-35 Score=264.33 Aligned_cols=178 Identities=17% Similarity=0.210 Sum_probs=150.5
Q ss_pred ccCCCCeEEEEecccccccCCCccccccccCCChHHHHHHHHHHHHHhccC--cEEEEeccCCCCccchhhhhhhhhccC
Q psy8942 31 VIVRPKSALLVINVQNDFVSGTLNMSQRSAKQNGLQVIEPINKLLDTVNFN--AVFYSLDWHPSNHISFIDNIKLRKIHY 108 (340)
Q Consensus 31 ~i~~~ktALLVIDmQndF~~G~l~~~~~~~~~~~~~iv~~I~~Li~~aR~~--~Vi~t~d~h~~~h~~f~~~~~~r~~~p 108 (340)
.+++.++|||||||||+|++. ++. ..++.+++++++++|+++||.. +||++++.|...+.. +
T Consensus 24 ~l~~~~tALlvID~Q~~f~~~-~~~----~~~~~~~~~~~i~~li~~ar~~g~pVi~t~~~~~~~~~~-------~---- 87 (203)
T cd01013 24 QIDPKRAVLLVHDMQRYFLDF-YDE----SAEPVPQLIANIARLRDWCRQAGIPVVYTAQPGNQTPEQ-------R---- 87 (203)
T ss_pred CCCCCcEEEEEEeChhhhhCc-ccc----ccchHHHHHHHHHHHHHHHHHcCCCEEEEecCCCCChhH-------H----
Confidence 478899999999999999962 110 1145789999999999999874 899998654321100 0
Q ss_pred CCCCCCCCccccccccccCCCccccccCCccccCCCCcccccccccccCCceEEEcCCCCCCCcccccccccccCCchHH
Q psy8942 109 TSTVQPEDAQTYDTVVFDGDTPMKQKLWPRHCVQDSWGAELHKDLKIVDNAIKVYMGTDPEEDSYSVFWDSKKLKRTSLA 188 (340)
Q Consensus 109 ~s~l~~~~~~~~~~v~~~g~~~~~~~~wp~hc~~Gt~g~el~~eL~p~~~d~vi~K~~~p~~~r~SaF~~~~~~~~t~L~ 188 (340)
. .....|++++..|++|++++++|.+.++|+++.| .+||+|+ +|+|+
T Consensus 88 ---------~------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~vi~K------~~~saF~------~T~L~ 134 (203)
T cd01013 88 ---------A------------LLNDFWGPGLTASPEETKIVTELAPQPDDTVLTK------WRYSAFK------RSPLL 134 (203)
T ss_pred ---------H------------HHHHHhhccCCCCCCccccccccCCCCCCEEEeC------CCcCCcC------CCCHH
Confidence 0 0012466677778999999999999999999999 5899998 99999
Q ss_pred HHHHhCCCcEEEEEeecCChhHHHHHHHHHhCCCeEEEECCCCCCCCHHHHHHHHHHHHhcCcEEecHH
Q psy8942 189 KQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGMDLDDIERTRNTILENYGSCVQSD 257 (340)
Q Consensus 189 ~~L~~~gi~~lii~Gv~T~~CV~~Ta~dA~~~Gy~V~vv~Da~~s~~~~~~~~al~~l~~~g~~v~ts~ 257 (340)
.+|+++|+++|+|+|+.||+||.+||++|+++||+|+|++|||++++++.|+.+|+.|...++.|++++
T Consensus 135 ~~Lr~~gi~~lii~Gv~T~~CV~~Ta~~A~~~Gy~v~vv~Da~as~~~~~h~~al~~l~~~~a~v~~t~ 203 (203)
T cd01013 135 ERLKESGRDQLIITGVYAHIGCLSTAVDAFMRDIQPFVVADAIADFSLEEHRMALKYAATRCAMVVSTD 203 (203)
T ss_pred HHHHHcCCCEEEEEEeccChhHHHHHHHHHHCCCeEEEeccccCCCCHHHHHHHHHHHHhheeEeeecC
Confidence 999999999999999999999999999999999999999999999999999999999999999998864
No 11
>COG1335 PncA Amidases related to nicotinamidase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=2.8e-33 Score=253.09 Aligned_cols=192 Identities=29% Similarity=0.469 Sum_probs=150.4
Q ss_pred cCCCCeEEEEecccccccCCCccccccccCCChHHHHHHHHHHHHHhccC--cEEEEeccCCCCccchhhhhhhhhccCC
Q psy8942 32 IVRPKSALLVINVQNDFVSGTLNMSQRSAKQNGLQVIEPINKLLDTVNFN--AVFYSLDWHPSNHISFIDNIKLRKIHYT 109 (340)
Q Consensus 32 i~~~ktALLVIDmQndF~~G~l~~~~~~~~~~~~~iv~~I~~Li~~aR~~--~Vi~t~d~h~~~h~~f~~~~~~r~~~p~ 109 (340)
++++++|||+|||||+|+++...... ...+. ..+++++++|++++|.. +|++++++|+..+..+.. . +
T Consensus 1 ~~~~~~ALivID~Q~~f~~~~~~~~~-~~~~~-~~i~~~i~~l~~~ar~~~~~vi~t~~~~~~~~~~~~~-~------~- 70 (205)
T COG1335 1 LDPAKTALIVVDMQNDFMPGGGSLAA-LGVDG-RKIIPNIAALVDAARAAGQPVIATQDWHPADISSLAG-S------P- 70 (205)
T ss_pred CCccceEEEEEeeeccccCCCCcccc-cCCch-hhhHHHHHHHHHHHHHcCCeEEEecccCCCccccccc-c------c-
Confidence 35789999999999999984322100 01111 58999999999999864 899999999876543221 0 0
Q ss_pred CCCCCCCccccccccccCCCccccccCCccccCCCCcccccccccccCC------ceEEEcCCCCCCCcccccccccccC
Q psy8942 110 STVQPEDAQTYDTVVFDGDTPMKQKLWPRHCVQDSWGAELHKDLKIVDN------AIKVYMGTDPEEDSYSVFWDSKKLK 183 (340)
Q Consensus 110 s~l~~~~~~~~~~v~~~g~~~~~~~~wp~hc~~Gt~g~el~~eL~p~~~------d~vi~K~~~p~~~r~SaF~~~~~~~ 183 (340)
... .... ||.||++|++|++++++|.|... +.++.|. ++||+|+
T Consensus 71 ----------------~~~--~~~~-~~~h~~~g~~g~~~~~~l~~~~~~~~~~~~~~~~k~-----~~~saF~------ 120 (205)
T COG1335 71 ----------------ESS--KLFP-WPRHDVKGTPGAELLGELPPAVDDAQLVPEDVIFKK-----HGYSAFA------ 120 (205)
T ss_pred ----------------ccc--cCCC-CcchhcCCCcchhhccccccccccccccceeeeccc-----cccCccc------
Confidence 000 0112 99999999999999999998776 6777774 5999999
Q ss_pred CchHHHHHHhCCCcEEEEEeecCChhHHHHHHHHHhCCCeEEEECCCCCCCC-HHHHHHHHHHHHh-cCcEEecHHHHHH
Q psy8942 184 RTSLAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGMD-LDDIERTRNTILE-NYGSCVQSDEVKS 261 (340)
Q Consensus 184 ~t~L~~~L~~~gi~~lii~Gv~T~~CV~~Ta~dA~~~Gy~V~vv~Da~~s~~-~~~~~~al~~l~~-~g~~v~ts~ev~~ 261 (340)
+|+|+.+|+++|+++|++||+.||+||.+|+++|+++||+|++++|||++.+ ...+..++..+.. ..+.++++++...
T Consensus 121 ~T~L~~~Lr~~~i~~l~v~G~~td~CV~~T~~~A~~~gy~v~v~~da~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (205)
T COG1335 121 GTDLDDILRNLGIDTVVVCGIATDICVLATARDAFDLGYQVTLVEDATAGSSLDRSGEAAARLEKHHIFGAVLDTEEALA 200 (205)
T ss_pred CCCHHHHHHHCCCCEEEEeeeehhHHHHHHHHHHHHCCCeEEEehhhcccCCCChHHHHHHHHHHhhhhcceeehHHHHh
Confidence 9999999999999999999999999999999999999999999999999999 5556777776666 3666666666554
Q ss_pred HH
Q psy8942 262 MV 263 (340)
Q Consensus 262 ~l 263 (340)
.+
T Consensus 201 ~~ 202 (205)
T COG1335 201 LW 202 (205)
T ss_pred hh
Confidence 43
No 12
>cd01012 YcaC_related YcaC related amidohydrolases; E.coli YcaC is an homooctameric hydrolase with unknown specificity. Despite its weak sequence similarity, it is structurally related to other amidohydrolases and shares conserved active site residues with them. Multimerisation interface seems not to be conserved in all members.
Probab=100.00 E-value=2.7e-32 Score=237.95 Aligned_cols=154 Identities=21% Similarity=0.281 Sum_probs=137.6
Q ss_pred EEEEecccccccCCCccccccccCCChHHHHHHHHHHHHHhccC--cEEEEeccCCCCccchhhhhhhhhccCCCCCCCC
Q psy8942 38 ALLVINVQNDFVSGTLNMSQRSAKQNGLQVIEPINKLLDTVNFN--AVFYSLDWHPSNHISFIDNIKLRKIHYTSTVQPE 115 (340)
Q Consensus 38 ALLVIDmQndF~~G~l~~~~~~~~~~~~~iv~~I~~Li~~aR~~--~Vi~t~d~h~~~h~~f~~~~~~r~~~p~s~l~~~ 115 (340)
|||||||||||+.+. .+..++++++++|+++||.. ||+|+++. +
T Consensus 1 aLlvID~Q~~f~~~~---------~~~~~~~~~i~~l~~~ar~~g~pVi~~~~~--~----------------------- 46 (157)
T cd01012 1 ALLLVDVQEKLAPAI---------KSFDELINNTVKLAKAAKLLDVPVILTEQY--P----------------------- 46 (157)
T ss_pred CEEEEeCcHHHHHhh---------cCHHHHHHHHHHHHHHHHhcCCCEEEEeeC--C-----------------------
Confidence 699999999999631 24799999999999999875 88888521 0
Q ss_pred CccccccccccCCCccccccCCccccCCCCcccccccccc-cCCceEEEcCCCCCCCcccccccccccCCchHHHHHHhC
Q psy8942 116 DAQTYDTVVFDGDTPMKQKLWPRHCVQDSWGAELHKDLKI-VDNAIKVYMGTDPEEDSYSVFWDSKKLKRTSLAKQLEAK 194 (340)
Q Consensus 116 ~~~~~~~v~~~g~~~~~~~~wp~hc~~Gt~g~el~~eL~p-~~~d~vi~K~~~p~~~r~SaF~~~~~~~~t~L~~~L~~~ 194 (340)
++..+++++|.| .+++.++.| ++||+|+ +|+|+.+|+++
T Consensus 47 ----------------------------~~~g~~~~~l~~~~~~~~vi~K------~~~saf~------~t~L~~~L~~~ 86 (157)
T cd01012 47 ----------------------------KGLGPTVPELREVFPDAPVIEK------TSFSCWE------DEAFRKALKAT 86 (157)
T ss_pred ----------------------------CCCCCchHHHHhhCCCCCceec------ccccCcC------CHHHHHHHHhc
Confidence 011268899998 788999999 4899998 99999999999
Q ss_pred CCcEEEEEeecCChhHHHHHHHHHhCCCeEEEECCCCCCCCHHHHHHHHHHHHhcCcEEecHHHHHHHHhc
Q psy8942 195 KVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGMDLDDIERTRNTILENYGSCVQSDEVKSMVEG 265 (340)
Q Consensus 195 gi~~lii~Gv~T~~CV~~Ta~dA~~~Gy~V~vv~Da~~s~~~~~~~~al~~l~~~g~~v~ts~ev~~~l~~ 265 (340)
|+++|+|+|+.||+||.+|+++|+++||+|+|++|||++++++.|+.+|+.|...|+.|+++++++.+|++
T Consensus 87 gi~~lii~G~~T~~CV~~Ta~~a~~~g~~v~v~~Da~as~~~~~h~~al~~~~~~~~~v~~~~~~~~~l~~ 157 (157)
T cd01012 87 GRKQVVLAGLETHVCVLQTALDLLEEGYEVFVVADACGSRSKEDHELALARMRQAGAVLTTSESVLFELQR 157 (157)
T ss_pred CCCEEEEEEeeccHHHHHHHHHHHHCCCEEEEEeeCCCCCCHHHHHHHHHHHHHCCCEEeeHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999874
No 13
>PLN02743 nicotinamidase
Probab=99.97 E-value=1.9e-31 Score=247.85 Aligned_cols=180 Identities=18% Similarity=0.251 Sum_probs=142.1
Q ss_pred cCCCCeEEEEecccccccC---CCccccccccCCChHHHHHHHHHHHHHhccC--cEEEEeccCCCCccchhhhhhhhhc
Q psy8942 32 IVRPKSALLVINVQNDFVS---GTLNMSQRSAKQNGLQVIEPINKLLDTVNFN--AVFYSLDWHPSNHISFIDNIKLRKI 106 (340)
Q Consensus 32 i~~~ktALLVIDmQndF~~---G~l~~~~~~~~~~~~~iv~~I~~Li~~aR~~--~Vi~t~d~h~~~h~~f~~~~~~r~~ 106 (340)
+.+.++|||||||||||++ |.++.. ...+...++++++++|+++||.. +||+++++|.+...
T Consensus 23 ~~~~~tALlVIDmQndF~~~~~g~l~~~--~~~~~~~~iv~~i~~Ll~~aR~~g~pVI~~~d~h~~~~~----------- 89 (239)
T PLN02743 23 NGDVRTGLVLVDEVNGFCTVGAGNLAPR--EPDKQISKMVDESARLAREFCERKWPVLAFLDSHHPDKP----------- 89 (239)
T ss_pred cCCCCEEEEEEeCcCCccCCCccccccc--cchhhHHHHHHHHHHHHHHHHHCCCeEEEEeCccCCCcc-----------
Confidence 5567899999999999996 233211 01245678999999999999875 89999988743210
Q ss_pred cCCCCCCCCCccccccccccCCCccccccCCccccCCCCcccccccccccCCce---EEEcCCCCCCCcccccccccccC
Q psy8942 107 HYTSTVQPEDAQTYDTVVFDGDTPMKQKLWPRHCVQDSWGAELHKDLKIVDNAI---KVYMGTDPEEDSYSVFWDSKKLK 183 (340)
Q Consensus 107 ~p~s~l~~~~~~~~~~v~~~g~~~~~~~~wp~hc~~Gt~g~el~~eL~p~~~d~---vi~K~~~p~~~r~SaF~~~~~~~ 183 (340)
...||+||+.|+||++++++|+|.+++. ++.| .+||+|++.....
T Consensus 90 --------------------------~~~~~~h~v~Gt~g~ei~~~L~p~~~~~~v~v~~K------~~~saF~~t~~~~ 137 (239)
T PLN02743 90 --------------------------EHPYPPHCIVGTGEENLVPALQWLENDPNVTLRRK------DCIDGFVGAIEKD 137 (239)
T ss_pred --------------------------ccCCCCccCCCCcccccchhhCCCCCCceEEEEec------Ccccccccccccc
Confidence 1248899999999999999999887775 4457 5999998321111
Q ss_pred Cch-HHHHHHhCCCcEEEEEeecCChhHH---HHHHHHHhCCC-----eEEEECCCCCCCCHHH----------------
Q psy8942 184 RTS-LAKQLEAKKVTDVYVCGLAYDVCVG---ASAIDAITIGY-----RTILIEDCCRGMDLDD---------------- 238 (340)
Q Consensus 184 ~t~-L~~~L~~~gi~~lii~Gv~T~~CV~---~Ta~dA~~~Gy-----~V~vv~Da~~s~~~~~---------------- 238 (340)
+|+ |..+|+++||++|+|+|++|++||. +||++|+++|| +|+|++|||++++.+.
T Consensus 138 ~t~~L~~~Lr~~gI~~liv~Gv~T~~CV~~~~sTardA~~~Gy~~~~~~V~Vv~DA~at~d~~~h~~~~~~~~~~~~~~~ 217 (239)
T PLN02743 138 GSNVFVDWVNNNKIKVILVVGICTDICVLDFVASALSARNHGILPPLEDVVVYSRGCATYDLPLHVAKTIKGALAHPQEL 217 (239)
T ss_pred CccHHHHHHHHCCCCEEEEEEeCcchhccChHHHHHHHHHcCCCCCCceEEEeCCccccCChhhhhhhhhccccCCCHHH
Confidence 234 8999999999999999999999998 99999999999 9999999999999764
Q ss_pred -HHHHHHHHHhcCcEEecH
Q psy8942 239 -IERTRNTILENYGSCVQS 256 (340)
Q Consensus 239 -~~~al~~l~~~g~~v~ts 256 (340)
|+.++..|...|+.|++.
T Consensus 218 ~~~~~~~~~~~~~~~v~~~ 236 (239)
T PLN02743 218 MHHMGLYMAKGRGAKVVSK 236 (239)
T ss_pred HHHHHHHHHHhCCcEeeee
Confidence 345667777778887764
No 14
>cd00431 cysteine_hydrolases Cysteine hydrolases; This family contains amidohydrolases, like CSHase (N-carbamoylsarcosine amidohydrolase), involved in creatine metabolism and nicotinamidase, converting nicotinamide to nicotinic acid and ammonia in the pyridine nucleotide cycle. It also contains isochorismatase, an enzyme that catalyzes the conversion of isochorismate to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of the vinyl ether bond, and other related enzymes with unknown function.
Probab=99.97 E-value=2.1e-31 Score=231.59 Aligned_cols=158 Identities=37% Similarity=0.691 Sum_probs=137.1
Q ss_pred EEEEecccccccCCCccccccccCCChHHHHHHHHHHHHHhccC--cEEEEeccCCCCccchhhhhhhhhccCCCCCCCC
Q psy8942 38 ALLVINVQNDFVSGTLNMSQRSAKQNGLQVIEPINKLLDTVNFN--AVFYSLDWHPSNHISFIDNIKLRKIHYTSTVQPE 115 (340)
Q Consensus 38 ALLVIDmQndF~~G~l~~~~~~~~~~~~~iv~~I~~Li~~aR~~--~Vi~t~d~h~~~h~~f~~~~~~r~~~p~s~l~~~ 115 (340)
|||+|||||+|+.+.... .++...++++++++++++|.. +|+++++.+......+
T Consensus 1 aLliID~Q~~f~~~~~~~-----~~~~~~~~~~i~~l~~~ar~~~~~vi~~~~~~~~~~~~~------------------ 57 (161)
T cd00431 1 ALLVVDMQNDFVPGGGLL-----LPGADELVPNINRLLAAARAAGIPVIFTRDWHPPDDPEF------------------ 57 (161)
T ss_pred CEEEEECcccCcCCCCCc-----CccHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCCCccc------------------
Confidence 699999999999742211 156899999999999999874 8999987654321100
Q ss_pred CccccccccccCCCccccccCCccccCCCCcccccccccccCCceEEEcCCCCCCCcccccccccccCCchHHHHHHhCC
Q psy8942 116 DAQTYDTVVFDGDTPMKQKLWPRHCVQDSWGAELHKDLKIVDNAIKVYMGTDPEEDSYSVFWDSKKLKRTSLAKQLEAKK 195 (340)
Q Consensus 116 ~~~~~~~v~~~g~~~~~~~~wp~hc~~Gt~g~el~~eL~p~~~d~vi~K~~~p~~~r~SaF~~~~~~~~t~L~~~L~~~g 195 (340)
. ...|+.||..|++|++++++|++.+++.++.| .++|+|+ +|+|.++|+++|
T Consensus 58 -----------~-----~~~~~~~~~~~s~~~~~~~~l~~~~~~~~i~K------~~~saf~------~t~l~~~L~~~~ 109 (161)
T cd00431 58 -----------A-----ELLWPPHCVKGTEGAELVPELAPLPDDLVIEK------TRYSAFY------GTDLDELLRERG 109 (161)
T ss_pred -----------c-----cccCcccccCCCchhhcchhhCCCCCCEEEec------CCcCCcc------CCCHHHHHHHCC
Confidence 0 01588999999999999999999889999999 4899998 899999999999
Q ss_pred CcEEEEEeecCChhHHHHHHHHHhCCCeEEEECCCCCCCCHHHHHHHHHHH
Q psy8942 196 VTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGMDLDDIERTRNTI 246 (340)
Q Consensus 196 i~~lii~Gv~T~~CV~~Ta~dA~~~Gy~V~vv~Da~~s~~~~~~~~al~~l 246 (340)
+++|+|+|+.|++||.+|+++|+++||+|+|++|||++++.+.|+.++++|
T Consensus 110 i~~vil~G~~t~~CV~~T~~~a~~~G~~v~vi~Da~~s~~~~~~~~al~~~ 160 (161)
T cd00431 110 IDTLVVCGIATDICVLATARDALDLGYRVIVVEDACATRDEEDHEAALERL 160 (161)
T ss_pred CCEEEEEecCcChhHHHHHHHHHHCCCEEEEehhhcccCChHHHHHHHHHc
Confidence 999999999999999999999999999999999999999999999999886
No 15
>cd01014 nicotinamidase_related Nicotinamidase_ related amidohydrolases. Cysteine hydrolases of unknown function that share the catalytic triad with other amidohydrolases, like nicotinamidase, which converts nicotinamide to nicotinic acid and ammonia.
Probab=99.96 E-value=7.3e-30 Score=222.22 Aligned_cols=144 Identities=25% Similarity=0.402 Sum_probs=124.2
Q ss_pred EEEEecccccccCCCccccccccCCChHHHHHHHHHHHHHhccC--cEEEEeccCCCCccchhhhhhhhhccCCCCCCCC
Q psy8942 38 ALLVINVQNDFVSGTLNMSQRSAKQNGLQVIEPINKLLDTVNFN--AVFYSLDWHPSNHISFIDNIKLRKIHYTSTVQPE 115 (340)
Q Consensus 38 ALLVIDmQndF~~G~l~~~~~~~~~~~~~iv~~I~~Li~~aR~~--~Vi~t~d~h~~~h~~f~~~~~~r~~~p~s~l~~~ 115 (340)
|||+|||||+|+++.... .+..++++++++|++++|.. +|++++++|...
T Consensus 1 aLlviD~Q~~f~~~~~~~------~~~~~~v~~i~~li~~~r~~~~~Vi~~~~~~~~~---------------------- 52 (155)
T cd01014 1 ALLVIDVQNGYFDGGLPP------LNNEAALENIAALIAAARAAGIPVIHVRHIDDEG---------------------- 52 (155)
T ss_pred CEEEEeCchhhhCCCCCc------CCHHHHHHHHHHHHHHHHHCCCeEEEEEeccCCC----------------------
Confidence 699999999999754321 36899999999999999874 899998654210
Q ss_pred CccccccccccCCCccccccCCccccCCCCcccccccccccCCceEEEcCCCCCCCcccccccccccCCchHHHHHHhCC
Q psy8942 116 DAQTYDTVVFDGDTPMKQKLWPRHCVQDSWGAELHKDLKIVDNAIKVYMGTDPEEDSYSVFWDSKKLKRTSLAKQLEAKK 195 (340)
Q Consensus 116 ~~~~~~~v~~~g~~~~~~~~wp~hc~~Gt~g~el~~eL~p~~~d~vi~K~~~p~~~r~SaF~~~~~~~~t~L~~~L~~~g 195 (340)
+ .+..|++|++++++|.+.+.+.++.| .+||+|. +|+|.++|+++|
T Consensus 53 ---------------------~-~~~~gt~g~~l~~~l~~~~~d~v~~K------~~~saf~------~t~l~~~L~~~g 98 (155)
T cd01014 53 ---------------------G-SFAPGSEGWEIHPELAPLEGETVIEK------TVPNAFY------GTDLEEWLREAG 98 (155)
T ss_pred ---------------------C-CCCCCCCccccchhhcCCCCCEEEeC------CCCCCcC------CCCHHHHHHHCC
Confidence 0 02468999999999999888999999 4899998 899999999999
Q ss_pred CcEEEEEeecCChhHHHHHHHHHhCCCeEEEECCCCCCCCHHHHHHHH
Q psy8942 196 VTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGMDLDDIERTR 243 (340)
Q Consensus 196 i~~lii~Gv~T~~CV~~Ta~dA~~~Gy~V~vv~Da~~s~~~~~~~~al 243 (340)
+++|+|+|+.|++||.+||++|+++||+|+|++|||++++.+.|+.++
T Consensus 99 i~~viv~G~~td~CV~~Ta~~a~~~g~~v~vi~Da~~s~~~~~~~~~~ 146 (155)
T cd01014 99 IDHLVICGAMTEMCVDTTVRSAFDLGYDVTVVADACATFDLPDHGGVL 146 (155)
T ss_pred CCEEEEEeeccchhHHHHHHHHHHCCCcEEEecccccCCCcccCCcee
Confidence 999999999999999999999999999999999999999988776543
No 16
>COG1535 EntB Isochorismate hydrolase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.96 E-value=4.4e-29 Score=217.76 Aligned_cols=186 Identities=18% Similarity=0.213 Sum_probs=157.7
Q ss_pred ccCCCCeEEEEecccccccCCCccccccccCCChHHHHHHHHHHHHHhccC--cEEEEeccCCCCccchhhhhhhhhccC
Q psy8942 31 VIVRPKSALLVINVQNDFVSGTLNMSQRSAKQNGLQVIEPINKLLDTVNFN--AVFYSLDWHPSNHISFIDNIKLRKIHY 108 (340)
Q Consensus 31 ~i~~~ktALLVIDmQndF~~G~l~~~~~~~~~~~~~iv~~I~~Li~~aR~~--~Vi~t~d~h~~~h~~f~~~~~~r~~~p 108 (340)
+++++|.+|||+||||.|++..- +..+....+++||++|-..|... ||+||.+ |..
T Consensus 25 ~~~p~RavLLIhDMQ~YFv~~~~-----~~~~~~~~li~Ni~~Lr~~~~~~giPVvyTaq--p~~--------------- 82 (218)
T COG1535 25 RFEPKRAVLLIHDMQNYFVSPWG-----ENCPLMEQLIANIAKLRIWCKQAGIPVVYTAQ--PGE--------------- 82 (218)
T ss_pred ccCcccceeeeehhHHhhcCCCC-----CCCccHHHHHHHHHHHHHHHHHcCCcEEEEec--CCc---------------
Confidence 57899999999999999997211 11246899999999999999764 8999873 221
Q ss_pred CCCCCCCCccccccccccCCCccccccCCccccCCCCcccccccccccCCceEEEcCCCCCCCcccccccccccCCchHH
Q psy8942 109 TSTVQPEDAQTYDTVVFDGDTPMKQKLWPRHCVQDSWGAELHKDLKIVDNAIKVYMGTDPEEDSYSVFWDSKKLKRTSLA 188 (340)
Q Consensus 109 ~s~l~~~~~~~~~~v~~~g~~~~~~~~wp~hc~~Gt~g~el~~eL~p~~~d~vi~K~~~p~~~r~SaF~~~~~~~~t~L~ 188 (340)
+ +|+++.. -+..|.|....+....+++++|.|..+|.++.| +|||||+ .++|.
T Consensus 83 --q-s~~draL------------L~d~WGpgl~~~p~~~~vv~~l~P~~~D~vL~k------wrYsAF~------~s~Ll 135 (218)
T COG1535 83 --Q-SPEDRAL------------LKDFWGPGLTASPEQQKVVDELAPGADDTVLTK------WRYSAFH------RSPLL 135 (218)
T ss_pred --C-CHHHHHH------------HHHhcCCCCCCChhhhhhHHhcCCCCCceEEee------eehhhhh------cChHH
Confidence 0 1222211 124577766666667789999999999999999 7999999 99999
Q ss_pred HHHHhCCCcEEEEEeecCChhHHHHHHHHHhCCCeEEEECCCCCCCCHHHHHHHHHHHHhcCcEEecHHHHHHHHhc
Q psy8942 189 KQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGMDLDDIERTRNTILENYGSCVQSDEVKSMVEG 265 (340)
Q Consensus 189 ~~L~~~gi~~lii~Gv~T~~CV~~Ta~dA~~~Gy~V~vv~Da~~s~~~~~~~~al~~l~~~g~~v~ts~ev~~~l~~ 265 (340)
+.||+.|+++|||+|+.+|+|++.||.||+.+++++++|.||+++++.+.|..+|+++....+.|+.+++++.++..
T Consensus 136 q~lr~~grdQLIItGVyaHigcl~TA~dAFm~diqpfmV~DAlaDfs~~~H~msLky~A~r~a~vv~Teell~~~~~ 212 (218)
T COG1535 136 QMLREKGRDQLIITGVYAHIGCLTTATDAFMRDIQPFMVADALADFSEEEHRMSLKYVAGRCARVVMTEELLCALAS 212 (218)
T ss_pred HHHHHcCCCcEEEeehhhhhhhhhhHHHHHHhcCcceeehhhhhhccHHHHHHHHHHHhcceeEEeeHHHHhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998874
No 17
>KOG4044|consensus
Probab=99.86 E-value=4.2e-21 Score=165.74 Aligned_cols=170 Identities=16% Similarity=0.278 Sum_probs=139.7
Q ss_pred hhccCCCCeEEEEecccccccCCCccccccccCCChHHHHHHHHHHHHHhccC--cEEEEeccCCCCccchhhhhhhhhc
Q psy8942 29 IKVIVRPKSALLVINVQNDFVSGTLNMSQRSAKQNGLQVIEPINKLLDTVNFN--AVFYSLDWHPSNHISFIDNIKLRKI 106 (340)
Q Consensus 29 ~~~i~~~ktALLVIDmQndF~~G~l~~~~~~~~~~~~~iv~~I~~Li~~aR~~--~Vi~t~d~h~~~h~~f~~~~~~r~~ 106 (340)
..++.|++|++++.|||..|.+. .+-..+++.+..+|++++|.- |+++|.++ |.
T Consensus 8 l~rl~P~~t~fflCDmQEKFrpa---------i~yf~~iIs~~~rLl~aaril~vP~ivTEqY-P~-------------- 63 (201)
T KOG4044|consen 8 LGRLNPSSTVFFLCDMQEKFRPA---------IPYFPSIISVTTRLLAAARILQVPVIVTEQY-PE-------------- 63 (201)
T ss_pred ceecCCCceEEEEechHhhhccc---------chhhHHHHHHHHHHHHhhhhhCCcEEeeccc-cc--------------
Confidence 35678899999999999999972 245789999999999999974 88887531 11
Q ss_pred cCCCCCCCCCccccccccccCCCccccccCCccccCCCCcccccccccccCCceEEEcCCCCCCCcccccccccccCCch
Q psy8942 107 HYTSTVQPEDAQTYDTVVFDGDTPMKQKLWPRHCVQDSWGAELHKDLKIVDNAIKVYMGTDPEEDSYSVFWDSKKLKRTS 186 (340)
Q Consensus 107 ~p~s~l~~~~~~~~~~v~~~g~~~~~~~~wp~hc~~Gt~g~el~~eL~p~~~d~vi~K~~~p~~~r~SaF~~~~~~~~t~ 186 (340)
| + | ..+++|....-..++.| ..||+|. ++
T Consensus 64 --------------------g-------L-------G----~TV~eLd~~g~~~~~~K------T~FSM~~-------p~ 92 (201)
T KOG4044|consen 64 --------------------G-------L-------G----KTVPELDIEGLKLNLSK------TKFSMVL-------PP 92 (201)
T ss_pred --------------------c-------c-------c----ccchhhchhhhcccccc------cceeeeC-------ch
Confidence 0 0 1 12344433222344677 5899995 56
Q ss_pred HHHHHHh-CCCcEEEEEeecCChhHHHHHHHHHhCCCeEEEECCCCCCCCHHHHHHHHHHHHhcCcEEecHHHHHHHHhc
Q psy8942 187 LAKQLEA-KKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGMDLDDIERTRNTILENYGSCVQSDEVKSMVEG 265 (340)
Q Consensus 187 L~~~L~~-~gi~~lii~Gv~T~~CV~~Ta~dA~~~Gy~V~vv~Da~~s~~~~~~~~al~~l~~~g~~v~ts~ev~~~l~~ 265 (340)
.++.+++ .|.++|+++|+.|++||++||+|.+++|.+|++|.|||++++....+.|+++|+++|+.+.|+|.++..|-+
T Consensus 93 v~~s~~~i~~~k~VvL~GiEthvCv~qTa~dLl~rgl~VhvVaDacSSRs~~DR~~Al~r~rq~G~~lstsEsvI~~Lvg 172 (201)
T KOG4044|consen 93 VEDSLKDIFGGKTVVLFGIETHVCVLQTALDLLERGLNVHVVADACSSRSNQDRDLALERMRQAGANLSTSESVILNLVG 172 (201)
T ss_pred HHHHHHhccCCCeEEEEecchheehHHHHHHHHhCCceEEEEeehhccccchhHHHHHHHHHhcCCcccchHHHHHHHhc
Confidence 6666666 678899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchhh
Q psy8942 266 KDRRPELG 273 (340)
Q Consensus 266 ~~~~~~~~ 273 (340)
+.++|.|.
T Consensus 173 d~~~pkFk 180 (201)
T KOG4044|consen 173 DKNHPKFK 180 (201)
T ss_pred CCCCccHH
Confidence 99999987
No 18
>PF02739 5_3_exonuc_N: 5'-3' exonuclease, N-terminal resolvase-like domain; InterPro: IPR020046 The N-terminal and internal 5'3'-exonuclease domains are commonly found together, and are most often associated with 5' to 3' nuclease activities. The XPG protein signatures (PDOC00658 from PROSITEDOC) are never found outside the '53EXO' domains. The latter are found in more diverse proteins [, , ]. The number of amino acids that separate the two 53EXO domains, and the presence of accompanying motifs allow the diagnosis of several protein families. In the eubacterial type A DNA-polymerases, the N-terminal and internal domains are separated by a few amino acids, usually four. The pattern DNA_POLYMERASE_A (IPR001098 from INTERPRO) is always present towards the C terminus. Several eukaryotic structure-dependent endonucleases and exonucleases have the 53EXO domains separated by 24 to 27 amino acids, and the XPG protein signatures are always present. In several proteins from herpesviridae, the two 53EXO domains are separated by 50 to 120 amino acids. These proteins are implicated in the inhibition of the expression of the host genes. Eukaryotic DNA repair proteins with 600 to 700 amino acids between the 53_EXO domains all carry the XPG protein signatures. This entry represents the N-terminal resolvase-like domain, which has a 3-layer alpha/beta/alpha core structure and contains an alpha-helical arch [, ].; GO: 0003677 DNA binding, 0008409 5'-3' exonuclease activity; PDB: 1TAQ_A 1BGX_T 1TAU_A 1XO1_B 1EXN_A 1UT8_A 1UT5_B 3H7I_A 3H8J_A 3H8S_A ....
Probab=61.63 E-value=12 Score=32.93 Aligned_cols=44 Identities=23% Similarity=0.273 Sum_probs=39.0
Q ss_pred chHHHHHHhCCCcEEEEEeecCChhHHHHHHHHHhCCCeEEEEC
Q psy8942 185 TSLAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIE 228 (340)
Q Consensus 185 t~L~~~L~~~gi~~lii~Gv~T~~CV~~Ta~dA~~~Gy~V~vv~ 228 (340)
+.+.++|.+.|+..+..-|.+.|-++.+-|..+.++|++|++++
T Consensus 89 ~~i~~~l~~~gi~~~~~~g~EADDvIatla~~~~~~~~~v~IvS 132 (169)
T PF02739_consen 89 PYIKELLEALGIPVLEVPGYEADDVIATLAKKASEEGFEVIIVS 132 (169)
T ss_dssp HHHHHHHHHTTSEEEEETTB-HHHHHHHHHHHHHHTTCEEEEE-
T ss_pred HHHHHHHHHCCCCEecCCCCcHHHHHHHHHhhhccCCCEEEEEc
Confidence 45678888999999999999999999999999999999999986
No 19
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=55.15 E-value=2e+02 Score=27.66 Aligned_cols=45 Identities=18% Similarity=0.161 Sum_probs=30.5
Q ss_pred CchHHHHHHhCCCcEEEEEeecCCh-hHHHHHHHHHhCCCeEEEECCC
Q psy8942 184 RTSLAKQLEAKKVTDVYVCGLAYDV-CVGASAIDAITIGYRTILIEDC 230 (340)
Q Consensus 184 ~t~L~~~L~~~gi~~lii~Gv~T~~-CV~~Ta~dA~~~Gy~V~vv~Da 230 (340)
.++..+.++++|.+-+ =..+-.+ =+...+....++||.++++.|.
T Consensus 80 ~~~~~~~~~~~g~~vi--DaTCP~V~k~~~~v~~~~~~Gy~iviiG~~ 125 (281)
T PRK12360 80 SKKVYKDLKDKGLEII--DATCPFVKKIQNIVEEYYNKGYSIIIVGDK 125 (281)
T ss_pred CHHHHHHHHHCCCeEE--eCCCccchHHHHHHHHHHhCCCEEEEEcCC
Confidence 6788889999997632 2211111 1344577788999999999984
No 20
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=52.16 E-value=2e+02 Score=27.85 Aligned_cols=45 Identities=18% Similarity=0.234 Sum_probs=31.4
Q ss_pred CchHHHHHHhCCCcEEEE-EeecCChhHHHHHHHHHhCCCeEEEECCC
Q psy8942 184 RTSLAKQLEAKKVTDVYV-CGLAYDVCVGASAIDAITIGYRTILIEDC 230 (340)
Q Consensus 184 ~t~L~~~L~~~gi~~lii-~Gv~T~~CV~~Ta~dA~~~Gy~V~vv~Da 230 (340)
.....+.++++|.+-+=- |.+.| =|...+....+.||+++++.|.
T Consensus 78 s~~v~~~a~~r~l~v~DATCPlVt--Kvh~~v~~~~~~G~~iIliG~~ 123 (294)
T COG0761 78 SPAVREEAKERGLKVIDATCPLVT--KVHKEVERYAREGYEIILIGHK 123 (294)
T ss_pred CHHHHHHHHHCCCEEEecCCCcch--HHHHHHHHHHhCCCEEEEEccC
Confidence 677888999999763211 12222 2556678888999999999883
No 21
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=48.82 E-value=9.8 Score=23.57 Aligned_cols=23 Identities=43% Similarity=0.424 Sum_probs=19.6
Q ss_pred ccccccccCCCCcccHHHHHHHH
Q psy8942 3 EKNTLFDWNQDGLIDREEFAFCW 25 (340)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~ 25 (340)
+-|+.||-|.+|.++.++|....
T Consensus 4 ~~F~~~D~d~dG~I~~~Ef~~~~ 26 (29)
T PF00036_consen 4 EAFREFDKDGDGKIDFEEFKEMM 26 (29)
T ss_dssp HHHHHHSTTSSSEEEHHHHHHHH
T ss_pred HHHHHHCCCCCCcCCHHHHHHHH
Confidence 34788999999999999997765
No 22
>KOG1250|consensus
Probab=48.67 E-value=1.4e+02 Score=30.34 Aligned_cols=105 Identities=20% Similarity=0.138 Sum_probs=74.9
Q ss_pred CCCCcccccccccccCCceEEEcCCCCCCCcccccccccccCCchHHHHHHhCCCcEEEEEeecCChhHHHHHHHHHhCC
Q psy8942 142 QDSWGAELHKDLKIVDNAIKVYMGTDPEEDSYSVFWDSKKLKRTSLAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIG 221 (340)
Q Consensus 142 ~Gt~g~el~~eL~p~~~d~vi~K~~~p~~~r~SaF~~~~~~~~t~L~~~L~~~gi~~lii~Gv~T~~CV~~Ta~dA~~~G 221 (340)
.||-|-||...+...++.+++.=| -+... .+....|++.+- ++=|.|+.|+.|-.++ .++..|
T Consensus 201 qgTig~EIl~ql~~~~~AI~vpVG-------GGGLi-------aGIat~vk~~~p-~vkIIGVEt~~a~~f~--~sl~~g 263 (457)
T KOG1250|consen 201 QGTIGLEILEQLKEPDGAIVVPVG-------GGGLI-------AGIATGVKRVGP-HVKIIGVETEGAHSFN--ASLKAG 263 (457)
T ss_pred cchHHHHHHHhhcCCCCeEEEecC-------CchhH-------HHHHHHHHHhCC-CCceEEEeecCcHHHH--HHHhcC
Confidence 478888998888766666666543 23443 567788998888 8899999999997665 478899
Q ss_pred CeEEEE-----CCCCCCCCHHHHHHHHHHHHhc--CcEEecHHHHHHHHhc
Q psy8942 222 YRTILI-----EDCCRGMDLDDIERTRNTILEN--YGSCVQSDEVKSMVEG 265 (340)
Q Consensus 222 y~V~vv-----~Da~~s~~~~~~~~al~~l~~~--g~~v~ts~ev~~~l~~ 265 (340)
..|++. +|+.+. +...+.+++.+... .+.+++.+++..+..+
T Consensus 264 ~~V~lp~i~s~AdglaV--~~Vg~~tf~~a~~~~d~vvvV~~~ei~aaI~~ 312 (457)
T KOG1250|consen 264 KPVTLPKITSLADGLAV--KTVGENTFELAQKLVDRVVVVEDDEIAAAILR 312 (457)
T ss_pred Ceeecccccchhccccc--chhhHHHHHHHHhcCceEEEeccHHHHHHHHH
Confidence 887764 455444 44556677777765 3568888888776653
No 23
>PRK12390 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=47.91 E-value=68 Score=31.15 Aligned_cols=70 Identities=10% Similarity=-0.048 Sum_probs=46.4
Q ss_pred HHHHHhCCCcEEEEEeecCChhHHHHHHHHHhCCCeEEEECCCCCCC--CHHHHHHHHHHHHhcCcEEecHH
Q psy8942 188 AKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGM--DLDDIERTRNTILENYGSCVQSD 257 (340)
Q Consensus 188 ~~~L~~~gi~~lii~Gv~T~~CV~~Ta~dA~~~Gy~V~vv~Da~~s~--~~~~~~~al~~l~~~g~~v~ts~ 257 (340)
....+++|+.+|+-+|-.+..=..++|..|...|++++++.+.-... .++....-+..|+..|+.|+...
T Consensus 59 l~~a~~~G~~~vvs~G~s~GN~g~alA~aa~~~G~~~~iv~~~~~p~~~~~~~~~~~~~~~~~~GA~v~~v~ 130 (337)
T PRK12390 59 VPDALAQGADTLVSIGGVQSNHTRQVAAVAAHLGMKCVLVQENWVNYEDAVYDRVGNILLSRIMGADVRLVP 130 (337)
T ss_pred HHHHHHcCCCEEEEeCCCccHHHHHHHHHHHHcCCeEEEEeCCCCCCccchhhccccHHHHHHCCCEEEEeC
Confidence 34445789999998886666666788899999999999997653221 11112223455677788765543
No 24
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=45.77 E-value=11 Score=22.49 Aligned_cols=20 Identities=40% Similarity=0.428 Sum_probs=17.5
Q ss_pred cccccccCCCCcccHHHHHH
Q psy8942 4 KNTLFDWNQDGLIDREEFAF 23 (340)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~ 23 (340)
-|+.||-|.||.+|.++|..
T Consensus 4 ~F~~~D~d~DG~is~~E~~~ 23 (25)
T PF13202_consen 4 AFQQFDTDGDGKISFEEFQR 23 (25)
T ss_dssp HHHHHTTTSSSEEEHHHHHH
T ss_pred HHHHHcCCCCCcCCHHHHHH
Confidence 36789999999999999976
No 25
>TIGR00732 dprA DNA protecting protein DprA. Disruption of this gene in both Haemophilus influenzae and Helicobacter pylori drastically reduces the efficiency of transformation with exogenous DNA, but with different levels of effect on chromosomal (linear) and plasmid (circular) DNA. This difference suggests the DprA is not active in recombination, and it has been shown not to affect DNA binding, leaving the intermediate step in natural transformation, DNA processing. In Strep. pneumoniae, inactivation of dprA had no effect on the uptake of DNA. All of these data indicated that DprA is required at a later stage in transformation. Subsequently DprA and RecA were both shown in S. pneumoniae to be required to protect incoming ssDNA from immediate degradation. Role of DprA in non-transformable species is not known. The gene symbol smf was assigned in E. coli, but without assignment of function.
Probab=41.86 E-value=1.1e+02 Score=28.05 Aligned_cols=63 Identities=10% Similarity=0.048 Sum_probs=44.8
Q ss_pred CcEEEEEeecCChhHHHHHHHHHhCCCeEEEECCCCCCCCHHHHHHHHHHHHhcCcE-EecHHHHHHH
Q psy8942 196 VTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGMDLDDIERTRNTILENYGS-CVQSDEVKSM 262 (340)
Q Consensus 196 i~~lii~Gv~T~~CV~~Ta~dA~~~Gy~V~vv~Da~~s~~~~~~~~al~~l~~~g~~-v~ts~ev~~~ 262 (340)
.+-++|++-.....-+.||.-|.+.|-+|+++-....+. ..+- -..|.+.|+. +++.++++.+
T Consensus 156 s~~vivve~~~~sGtl~ta~~A~~~gr~v~~~pg~~~~~---~~~G-~~~Li~~GA~~i~~~~d~~~~ 219 (220)
T TIGR00732 156 SRAVLVVEAPLKSGALITARYALEQGREVFAYPGDLNSP---ESDG-CHKLIEQGAALITSAKDILET 219 (220)
T ss_pred cCEEEEEECCCCCchHHHHHHHHHhCCcEEEEcCCCCCc---cchH-HHHHHHCCCEEECCHHHHHHh
Confidence 467888888777788999999999999999996554432 2222 3344455776 6777777764
No 26
>TIGR01274 ACC_deam 1-aminocyclopropane-1-carboxylate deaminase. This pyridoxal phosphate-dependent enzyme degrades 1-aminocyclopropane-1-carboxylate, which in plants is a precursor of the ripening hormone ethylene, to ammonia and alpha-ketoglutarate. This model includes all members of this family for which function has been demonstrated experimentally, but excludes a closely related family often annotated as putative members of this family.
Probab=40.76 E-value=93 Score=30.24 Aligned_cols=70 Identities=13% Similarity=0.006 Sum_probs=46.0
Q ss_pred HHHHHHhCCCcEEEEEeecCChhHHHHHHHHHhCCCeEEEECCCCCCCCHH--HHHHHHHHHHhcCcEEecH
Q psy8942 187 LAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGMDLD--DIERTRNTILENYGSCVQS 256 (340)
Q Consensus 187 L~~~L~~~gi~~lii~Gv~T~~CV~~Ta~dA~~~Gy~V~vv~Da~~s~~~~--~~~~al~~l~~~g~~v~ts 256 (340)
+....+++|+++|+-+|-.+..=-.++|..|..+|++++++.+...+.+.. ....-+..|+..|+.|+..
T Consensus 57 ~l~~a~~~G~~~vvs~ggs~gN~g~alA~~a~~~Gl~~~iv~~~~~~~~~~~~~~~~~~~~~~~~GA~v~~v 128 (337)
T TIGR01274 57 LIPDAQAQGCTTLVSIGGIQSNQTRQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQLSRIMGADVRLD 128 (337)
T ss_pred HHHHHHHcCCCEEEECCCCcchHHHHHHHHHHHcCCcEEEEeccCCCccccchhccchHHHHHHcCCEEEEe
Confidence 334445789999888775555555678888999999999998764432211 1233455677788876544
No 27
>PRK05443 polyphosphate kinase; Provisional
Probab=37.28 E-value=2.6e+02 Score=30.49 Aligned_cols=82 Identities=13% Similarity=0.073 Sum_probs=59.2
Q ss_pred CCceEEEcCCCCCCCcccccccccccCCchHHHHHHhCCCc------EEEEEeecCChhHHHHHHHHHhCCCeEEEECCC
Q psy8942 157 DNAIKVYMGTDPEEDSYSVFWDSKKLKRTSLAKQLEAKKVT------DVYVCGLAYDVCVGASAIDAITIGYRTILIEDC 230 (340)
Q Consensus 157 ~~d~vi~K~~~p~~~r~SaF~~~~~~~~t~L~~~L~~~gi~------~lii~Gv~T~~CV~~Ta~dA~~~Gy~V~vv~Da 230 (340)
..|+.+.-+ |-.|. .+..+|++...+ ++.+-=+..+-=+..+..+|.++|-+|.|+.+.
T Consensus 338 ~~DiLLh~P-------Y~SF~--------~~~~~i~~Aa~DP~V~~Ik~tlYr~~~~s~iv~aL~~Aa~~Gk~V~vlve~ 402 (691)
T PRK05443 338 EKDILLHHP-------YESFD--------PVVEFLRQAAADPDVLAIKQTLYRTSKDSPIVDALIEAAENGKQVTVLVEL 402 (691)
T ss_pred hCCEEEECC-------ccCch--------HHHHHHHHhccCCCeeEEEEEEEEecCCHHHHHHHHHHHHcCCEEEEEEcc
Confidence 357777653 55562 455577765542 333334445677889999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCcEE
Q psy8942 231 CRGMDLDDIERTRNTILENYGSC 253 (340)
Q Consensus 231 ~~s~~~~~~~~al~~l~~~g~~v 253 (340)
-+-++.+.-..-.+.|.++|+.|
T Consensus 403 karfde~~n~~~~~~L~~aGv~V 425 (691)
T PRK05443 403 KARFDEEANIRWARRLEEAGVHV 425 (691)
T ss_pred CccccHHHHHHHHHHHHHcCCEE
Confidence 99888876666667888889887
No 28
>cd00008 53EXOc 5'-3' exonuclease; T5 type 5'-3' exonuclease domains may co-occur with DNA polymerase I (Pol I) domains, or be part of Pol I containing complexes. They digest dsDNA and ssDNA, releasing mono-,di- and tri-nucleotides, as well as oligonucleotides, and have also been reported to possess RNase H activity. Also called 5' nuclease family, involved in structure-specific cleavage of flaps formed by Pol I activity (similar to mammalian flap endonuclease I, FEN-1). A single nucleic acid strand may be threaded through the 5' nuclease enzyme before cleavage occurs. The domain binds two divalent metal ions which are necessary for activity.
Probab=32.85 E-value=64 Score=29.97 Aligned_cols=44 Identities=23% Similarity=0.345 Sum_probs=39.7
Q ss_pred chHHHHHHhCCCcEEEEEeecCChhHHHHHHHHHhCCCeEEEEC
Q psy8942 185 TSLAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIE 228 (340)
Q Consensus 185 t~L~~~L~~~gi~~lii~Gv~T~~CV~~Ta~dA~~~Gy~V~vv~ 228 (340)
+.+.+.|+..|+..+..-|.+.|-++..-|..+...|+++++++
T Consensus 88 ~~~~~~l~~~gi~~i~~~~~EADD~ia~la~~~~~~g~~~~I~S 131 (240)
T cd00008 88 PLIKELLEALGIPVLEIEGYEADDVIGTLAKKAEAEGYKVVIVS 131 (240)
T ss_pred HHHHHHHHHCCCCEEecCCcCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 67788899999999999999999999888888889999999887
No 29
>TIGR03705 poly_P_kin polyphosphate kinase 1. Members of this protein family are the enzyme polyphosphate kinase 1 (PPK1). This family is found in many prokaryotes and also in Dictyostelium. Sequences in the seed alignment were taken from prokaryotic consecutive two-gene pairs in which the other gene encodes an exopolyphosphatase. It synthesizes polyphosphate from the terminal phosphate of ATP but not GTP, in contrast to PPK2.
Probab=32.75 E-value=2.4e+02 Score=30.56 Aligned_cols=82 Identities=13% Similarity=0.048 Sum_probs=56.3
Q ss_pred CCceEEEcCCCCCCCcccccccccccCCchHHHHHHhCCCc------EEEEEeecCChhHHHHHHHHHhCCCeEEEECCC
Q psy8942 157 DNAIKVYMGTDPEEDSYSVFWDSKKLKRTSLAKQLEAKKVT------DVYVCGLAYDVCVGASAIDAITIGYRTILIEDC 230 (340)
Q Consensus 157 ~~d~vi~K~~~p~~~r~SaF~~~~~~~~t~L~~~L~~~gi~------~lii~Gv~T~~CV~~Ta~dA~~~Gy~V~vv~Da 230 (340)
..|+.+.-+ |-.|. .+..+|++...+ ++.+-=+..+-=+.....+|.++|-+|+|+.|.
T Consensus 329 ~~DiLLh~P-------Y~Sf~--------~v~~~i~~Aa~DP~V~~Ik~tlYr~~~~s~ii~aL~~Aa~~Gk~V~v~veL 393 (672)
T TIGR03705 329 KKDILLHHP-------YESFD--------PVVEFLRQAAEDPDVLAIKQTLYRTSKDSPIIDALIEAAENGKEVTVVVEL 393 (672)
T ss_pred hcCEEEECC-------ccCHH--------HHHHHHHHHhcCCCceEEEEEEEEecCCcHHHHHHHHHHHcCCEEEEEEEe
Confidence 356676653 45552 455567665442 222333344566779999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCcEE
Q psy8942 231 CRGMDLDDIERTRNTILENYGSC 253 (340)
Q Consensus 231 ~~s~~~~~~~~al~~l~~~g~~v 253 (340)
=|.++.+.--.--+.|.++|+.|
T Consensus 394 kArfde~~ni~wa~~le~aG~~v 416 (672)
T TIGR03705 394 KARFDEEANIRWARRLEEAGVHV 416 (672)
T ss_pred hhhccchhhHHHHHHHHHcCCEE
Confidence 99999876655556888888754
No 30
>COG0303 MoeA Molybdopterin biosynthesis enzyme [Coenzyme metabolism]
Probab=32.62 E-value=2e+02 Score=29.09 Aligned_cols=60 Identities=18% Similarity=0.111 Sum_probs=50.1
Q ss_pred CchHHHHHHhCCCcEEEEEeecCC--hhHHHHHHHHHhCCCeEEEECCCCCCCCHHHHHHHHHH
Q psy8942 184 RTSLAKQLEAKKVTDVYVCGLAYD--VCVGASAIDAITIGYRTILIEDCCRGMDLDDIERTRNT 245 (340)
Q Consensus 184 ~t~L~~~L~~~gi~~lii~Gv~T~--~CV~~Ta~dA~~~Gy~V~vv~Da~~s~~~~~~~~al~~ 245 (340)
..-|..+|++.|. +++..|+..| --+..+...|.+. +++++.+-+++--+.+....+++.
T Consensus 205 ~~~l~a~l~~~G~-e~~~~giv~Dd~~~l~~~i~~a~~~-~DviItsGG~SvG~~D~v~~~l~~ 266 (404)
T COG0303 205 SYMLAALLERAGG-EVVDLGIVPDDPEALREAIEKALSE-ADVIITSGGVSVGDADYVKAALER 266 (404)
T ss_pred HHHHHHHHHHcCC-ceeeccccCCCHHHHHHHHHHhhhc-CCEEEEeCCccCcchHhHHHHHHh
Confidence 3468899999999 8888899988 6677777777777 999999999998888877777774
No 31
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=32.24 E-value=78 Score=27.87 Aligned_cols=64 Identities=19% Similarity=0.146 Sum_probs=43.1
Q ss_pred ccccccccccC----CchHHHHHHhCCCcEEEEEeecCChhHHHHHHHHHhCCCeEEEECCCCCCCCHH
Q psy8942 173 YSVFWDSKKLK----RTSLAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGMDLD 237 (340)
Q Consensus 173 ~SaF~~~~~~~----~t~L~~~L~~~gi~~lii~Gv~T~~CV~~Ta~dA~~~Gy~V~vv~Da~~s~~~~ 237 (340)
.+||...++.+ -.++...++++|++.|+++-+.--....+=+.+---.| +|.++.|..+.+.+.
T Consensus 46 PGAFTPTCS~~hlPgY~~~~d~f~~kGVD~I~cVSVND~FVm~AWak~~g~~~-~I~fi~Dg~geFTk~ 113 (165)
T COG0678 46 PGAFTPTCSSSHLPGYLELADEFKAKGVDEIYCVSVNDAFVMNAWAKSQGGEG-NIKFIPDGNGEFTKA 113 (165)
T ss_pred CCccCCCcccccCccHHHHHHHHHHcCCceEEEEEeCcHHHHHHHHHhcCCCc-cEEEecCCCchhhhh
Confidence 47777655431 24577788899999999998875443333233222223 899999999988765
No 32
>smart00475 53EXOc 5'-3' exonuclease.
Probab=31.56 E-value=74 Score=30.07 Aligned_cols=44 Identities=20% Similarity=0.236 Sum_probs=39.3
Q ss_pred chHHHHHHhCCCcEEEEEeecCChhHHHHHHHHHhCCCeEEEEC
Q psy8942 185 TSLAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIE 228 (340)
Q Consensus 185 t~L~~~L~~~gi~~lii~Gv~T~~CV~~Ta~dA~~~Gy~V~vv~ 228 (340)
+.+.++|+..|+..+..-|.+.|-.+.+-|..+...|++|++++
T Consensus 87 ~~~~~~l~~~gi~~i~~~g~EADD~iatla~~~~~~g~~~~IvS 130 (259)
T smart00475 87 PLIKELLDALGIPVLEVEGYEADDVIATLAKKAEAEGYEVRIVS 130 (259)
T ss_pred HHHHHHHHHCCCCEEeeCCcCHHHHHHHHHHHHHhCCCeEEEEe
Confidence 56778899999999999999999999888888888999999887
No 33
>KOG2643|consensus
Probab=31.53 E-value=38 Score=34.61 Aligned_cols=27 Identities=33% Similarity=0.499 Sum_probs=23.1
Q ss_pred ccccccCCCCcccHHHHHHHHhhhhhc
Q psy8942 5 NTLFDWNQDGLIDREEFAFCWNRWIKV 31 (340)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 (340)
|++||.|+||..|.++|-.+.-+|.++
T Consensus 431 F~IFD~N~Dg~LS~~EFl~Vmk~Rmhr 457 (489)
T KOG2643|consen 431 FTIFDENNDGTLSHKEFLAVMKRRMHR 457 (489)
T ss_pred EEEEccCCCCcccHHHHHHHHHHHhhc
Confidence 789999999999999997777677544
No 34
>PRK09482 flap endonuclease-like protein; Provisional
Probab=31.21 E-value=63 Score=30.65 Aligned_cols=44 Identities=11% Similarity=0.163 Sum_probs=40.4
Q ss_pred chHHHHHHhCCCcEEEEEeecCChhHHHHHHHHHhCCCeEEEEC
Q psy8942 185 TSLAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIE 228 (340)
Q Consensus 185 t~L~~~L~~~gi~~lii~Gv~T~~CV~~Ta~dA~~~Gy~V~vv~ 228 (340)
+.+.+.|.+.|+..+..-|.+.|-++.+-|..+.+.|++|++++
T Consensus 87 ~~i~~~l~~~gi~~~~~~g~EADDvIatla~~~~~~~~~v~I~S 130 (256)
T PRK09482 87 PAIRAAFEELGIDSWHADGNEADDLIATLAVKVAQAGHQATIVS 130 (256)
T ss_pred HHHHHHHHhCCCCEeccCCcCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 56778899999999999999999999999999999999999987
No 35
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=28.86 E-value=31 Score=21.11 Aligned_cols=24 Identities=38% Similarity=0.501 Sum_probs=19.4
Q ss_pred ccccccccCCCCcccHHHHHHHHh
Q psy8942 3 EKNTLFDWNQDGLIDREEFAFCWN 26 (340)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~ 26 (340)
+-|..||.+.+|.++.+.|...+.
T Consensus 4 ~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 4 EAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred HHHHHHCCCCCCcCcHHHHHHHHH
Confidence 457789999999999999987664
No 36
>COG0855 Ppk Polyphosphate kinase [Inorganic ion transport and metabolism]
Probab=28.43 E-value=3e+02 Score=29.80 Aligned_cols=83 Identities=13% Similarity=0.075 Sum_probs=59.9
Q ss_pred CCceEEEcCCCCCCCcccccccccccCCchHHHHHHhCCCc------EEEEEeecCChhHHHHHHHHHhCCCeEEEECCC
Q psy8942 157 DNAIKVYMGTDPEEDSYSVFWDSKKLKRTSLAKQLEAKKVT------DVYVCGLAYDVCVGASAIDAITIGYRTILIEDC 230 (340)
Q Consensus 157 ~~d~vi~K~~~p~~~r~SaF~~~~~~~~t~L~~~L~~~gi~------~lii~Gv~T~~CV~~Ta~dA~~~Gy~V~vv~Da 230 (340)
+.|+++.. -|-.|. ...++|++.-.+ +..+-=+..|-=+....++|.+.|-+|+|+...
T Consensus 342 e~DiLlhH-------PYeSF~--------~Vv~fl~qAA~DP~VLAIKqTLYRt~~dSpIV~ALi~AA~nGKqVtvlVEL 406 (696)
T COG0855 342 EGDILLHH-------PYESFE--------PVVEFLRQAAADPDVLAIKQTLYRTSKDSPIVRALIDAAENGKQVTVLVEL 406 (696)
T ss_pred hcCeEEEC-------chhhhH--------HHHHHHHHhhcCCCeEEEEEEEEecCCCCHHHHHHHHHHHcCCeEEEEEEE
Confidence 45666665 477783 377777774432 122334456666788999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCcEEe
Q psy8942 231 CRGMDLDDIERTRNTILENYGSCV 254 (340)
Q Consensus 231 ~~s~~~~~~~~al~~l~~~g~~v~ 254 (340)
-+-||+|.-=.--+.|.++|+.|+
T Consensus 407 kARFDEE~NI~WAk~LE~AGvhVv 430 (696)
T COG0855 407 KARFDEEANIHWAKRLERAGVHVV 430 (696)
T ss_pred hhhcChhhhhHHHHHHHhCCcEEE
Confidence 999999875555567888898754
No 37
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=27.92 E-value=2.3e+02 Score=26.66 Aligned_cols=62 Identities=15% Similarity=0.236 Sum_probs=48.0
Q ss_pred HhCCCcEEEEEeecCChhHHHHHHH-----HHhCCCeEEEECCCCCCCCHHHHHHHHHHHHhcCcEEe
Q psy8942 192 EAKKVTDVYVCGLAYDVCVGASAID-----AITIGYRTILIEDCCRGMDLDDIERTRNTILENYGSCV 254 (340)
Q Consensus 192 ~~~gi~~lii~Gv~T~~CV~~Ta~d-----A~~~Gy~V~vv~Da~~s~~~~~~~~al~~l~~~g~~v~ 254 (340)
+++|+. ++..|...+.|+.+...+ +.+.||+++=++|++-+.+.+.....++.+...|-.+.
T Consensus 51 ~~~~V~-v~~GGtl~E~~~~q~~~~~Yl~~~k~lGf~~IEiS~G~~~i~~~~~~rlI~~~~~~g~~v~ 117 (237)
T TIGR03849 51 KDYGIK-VYPGGTLFEIAHSKGKFDEYLNECDELGFEAVEISDGSMEISLEERCNLIERAKDNGFMVL 117 (237)
T ss_pred HHcCCe-EeCCccHHHHHHHhhhHHHHHHHHHHcCCCEEEEcCCccCCCHHHHHHHHHHHHhCCCeEe
Confidence 345553 455567888888887776 56889999999999999999998888888887665444
No 38
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=27.61 E-value=1.9e+02 Score=28.37 Aligned_cols=80 Identities=10% Similarity=0.165 Sum_probs=57.6
Q ss_pred chHHHHHHhCCCcEEEEEeecCChh-HHHHHHHHH-hCCCeEEEECCCCCCCCHHHHHHHHHHHHhcCcE---------E
Q psy8942 185 TSLAKQLEAKKVTDVYVCGLAYDVC-VGASAIDAI-TIGYRTILIEDCCRGMDLDDIERTRNTILENYGS---------C 253 (340)
Q Consensus 185 t~L~~~L~~~gi~~lii~Gv~T~~C-V~~Ta~dA~-~~Gy~V~vv~Da~~s~~~~~~~~al~~l~~~g~~---------v 253 (340)
..|.+.|+..| +-++|+|-...-. +...+.+++ +.|.++.+..+-....+.+..+.+.+.++..++. +
T Consensus 12 ~~l~~~l~~~g-r~lvVt~~~~~~~~~~~~v~~~L~~~~i~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~ 90 (366)
T PF00465_consen 12 EELGEELKRLG-RVLVVTDPSLSKSGLVDRVLDALEEAGIEVQVFDGVGPNPTLEDVDEAAEQARKFGADCIIAIGGGSV 90 (366)
T ss_dssp GGHHHHHHCTT-EEEEEEEHHHHHHTHHHHHHHHHHHTTCEEEEEEEESSS-BHHHHHHHHHHHHHTTSSEEEEEESHHH
T ss_pred HHHHHHHHhcC-CEEEEECchHHhCccHHHHHHHHhhCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCc
Confidence 57888888888 8888888644444 677777766 6788998888888888888888899888876643 4
Q ss_pred ecHHHHHHHHhc
Q psy8942 254 VQSDEVKSMVEG 265 (340)
Q Consensus 254 ~ts~ev~~~l~~ 265 (340)
++..-++..+..
T Consensus 91 ~D~aK~va~~~~ 102 (366)
T PF00465_consen 91 MDAAKAVALLLA 102 (366)
T ss_dssp HHHHHHHHHHHT
T ss_pred CcHHHHHHhhcc
Confidence 455555555544
No 39
>cd06449 ACCD Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia.
Probab=27.04 E-value=1.7e+02 Score=27.86 Aligned_cols=65 Identities=12% Similarity=-0.050 Sum_probs=39.9
Q ss_pred HHHhCCCcEEEEEeecCChhHHHHHHHHHhCCCeEEEECCCCCCCCH--HHHHHHHHHHHhcCcEEe
Q psy8942 190 QLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGMDL--DDIERTRNTILENYGSCV 254 (340)
Q Consensus 190 ~L~~~gi~~lii~Gv~T~~CV~~Ta~dA~~~Gy~V~vv~Da~~s~~~--~~~~~al~~l~~~g~~v~ 254 (340)
..+++|.++|+-+|-.+..=..+.|..|..+|++++++.+...+... .....-...|+..|+.|+
T Consensus 46 ~a~~~g~~~vv~~ggs~GN~g~alA~~a~~~G~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~Ga~v~ 112 (307)
T cd06449 46 DALAKGADTLVTVGGIQSNHTRQVAAVAAKLGLKCVLVQENWVPYSDAVYDRVGNILLSRIMGADVR 112 (307)
T ss_pred HHHHcCCCEEEECCCchhHHHHHHHHHHHHcCCeEEEEecCCCCcccccccccccHHHHHHCCCEEE
Confidence 34457888888876444444556777888899999988886554210 001112444666777754
No 40
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=26.89 E-value=3.1e+02 Score=21.46 Aligned_cols=65 Identities=17% Similarity=0.149 Sum_probs=49.9
Q ss_pred chHHHHHHhCCCcEEEEEeecCChhHHHHHHHHHhCCCeEEEECCCCCCCCHHHHHHHHHHHHhcCcEE
Q psy8942 185 TSLAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGMDLDDIERTRNTILENYGSC 253 (340)
Q Consensus 185 t~L~~~L~~~gi~~lii~Gv~T~~CV~~Ta~dA~~~Gy~V~vv~Da~~s~~~~~~~~al~~l~~~g~~v 253 (340)
+++++.|...+++-++|+.-. ..-...+..++++|..|++=.-.+. +.+..+..++.....+..+
T Consensus 52 ~~~~~ll~~~~~D~V~I~tp~--~~h~~~~~~~l~~g~~v~~EKP~~~--~~~~~~~l~~~a~~~~~~~ 116 (120)
T PF01408_consen 52 TDLEELLADEDVDAVIIATPP--SSHAEIAKKALEAGKHVLVEKPLAL--TLEEAEELVEAAKEKGVKV 116 (120)
T ss_dssp SSHHHHHHHTTESEEEEESSG--GGHHHHHHHHHHTTSEEEEESSSSS--SHHHHHHHHHHHHHHTSCE
T ss_pred hHHHHHHHhhcCCEEEEecCC--cchHHHHHHHHHcCCEEEEEcCCcC--CHHHHHHHHHHHHHhCCEE
Confidence 578999999999999998766 4467788999999997776665555 5677777777777766554
No 41
>PHA02567 rnh RnaseH; Provisional
Probab=26.82 E-value=1.1e+02 Score=29.98 Aligned_cols=43 Identities=7% Similarity=-0.020 Sum_probs=37.9
Q ss_pred hHHHHHHhCCCcEEEEEeecCChhHHHHHHHHHhCCCeEEEEC
Q psy8942 186 SLAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIE 228 (340)
Q Consensus 186 ~L~~~L~~~gi~~lii~Gv~T~~CV~~Ta~dA~~~Gy~V~vv~ 228 (340)
-+.+++...|+..+.+-|...|-++.+-|..+...|++|++++
T Consensus 111 ii~el~~~~gi~~l~~~g~EADDvIgTLA~k~~~~g~~VvIvS 153 (304)
T PHA02567 111 IVDEIKENMPYKVMKIDKAEADDIIAVLTKKFSAEGRPVLIVS 153 (304)
T ss_pred HHHHHHHHCCCCEEEeCCccHHHHHHHHHHHHHhCCCcEEEEe
Confidence 3455666679999999999999999999999999999999998
No 42
>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family. This model represents a family of pyridoxal phosphate-dependent enzymes closely related to (and often designated as putative examples of) 1-aminocyclopropane-1-carboxylate deaminase. It appears that members of this family include both D-cysteine desulfhydrase (EC 4.4.1.15) and 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7).
Probab=26.77 E-value=1.7e+02 Score=27.80 Aligned_cols=42 Identities=19% Similarity=0.177 Sum_probs=30.5
Q ss_pred HHHhCCCcEEEEEeecCChhHHHHHHHHHhCCCeEEEECCCC
Q psy8942 190 QLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCC 231 (340)
Q Consensus 190 ~L~~~gi~~lii~Gv~T~~CV~~Ta~dA~~~Gy~V~vv~Da~ 231 (340)
..+++|.++|+-+|-.+..=-.+.|..+..+|++++++.+..
T Consensus 50 ~a~~~g~~~vv~~g~ssGN~g~alA~~a~~~G~~~~ivvp~~ 91 (311)
T TIGR01275 50 DALSKGADTVITVGAIQSNHARATALAAKKLGLDAVLVLREK 91 (311)
T ss_pred HHHHcCCCEEEEcCCchhHHHHHHHHHHHHhCCceEEEecCC
Confidence 344678888998874444444566667778999999999984
No 43
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=26.50 E-value=3.1e+02 Score=27.51 Aligned_cols=68 Identities=15% Similarity=0.123 Sum_probs=44.6
Q ss_pred chHHHHHHhCCCcEEEEEeecCChhHHHHHHHHHhCCCeEEEECCC---CCCCCHHHHHHHHHHHHhcCcEEe
Q psy8942 185 TSLAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDC---CRGMDLDDIERTRNTILENYGSCV 254 (340)
Q Consensus 185 t~L~~~L~~~gi~~lii~Gv~T~~CV~~Ta~dA~~~Gy~V~vv~Da---~~s~~~~~~~~al~~l~~~g~~v~ 254 (340)
..+.++++....++++|.|- ....+.. |..+.+.|.+|+++.-. ...++++..+...+.|.+.|+.+.
T Consensus 137 ~~l~~~l~~~~~~~vvViGg-G~ig~E~-A~~l~~~g~~Vtli~~~~~l~~~~d~~~~~~l~~~l~~~gI~i~ 207 (438)
T PRK13512 137 DAIDQFIKANQVDKALVVGA-GYISLEV-LENLYERGLHPTLIHRSDKINKLMDADMNQPILDELDKREIPYR 207 (438)
T ss_pred HHHHHHHhhcCCCEEEEECC-CHHHHHH-HHHHHhCCCcEEEEecccccchhcCHHHHHHHHHHHHhcCCEEE
Confidence 34555665655688999883 4444443 45566789999999743 234466666677778888777654
No 44
>COG4927 Predicted choloylglycine hydrolase [General function prediction only]
Probab=26.40 E-value=56 Score=31.45 Aligned_cols=53 Identities=17% Similarity=0.222 Sum_probs=34.5
Q ss_pred cccchhhhhhccchhhHHHHHHhccCcccccceEEEEEeEEEEEEEEEeccccC
Q psy8942 285 IGSLYVRVIESNNSTSQNIITLLRIPTYLDSRYTIVWYGTIVYTYVIIGTKHSS 338 (340)
Q Consensus 285 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (340)
++-.-+++.|.-..+.|+++.|+|||.-..--|++. --.--|.-+-+|..|-+
T Consensus 176 ~~~viRyILE~C~~veqAV~~L~~IP~~ssqn~ivl-D~~~N~A~~el~~~~r~ 228 (336)
T COG4927 176 IILVIRYILETCHQVEQAVKALCRIPVASSQNVIVL-DSAGNYATLELGPGQRP 228 (336)
T ss_pred EEeEHHHHHHHHhhHHHHHHHHHhCCccccccEEEE-eccCcEEEEEecCCCcc
Confidence 445567888999999999999999998765555432 22222334444444443
No 45
>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated
Probab=26.40 E-value=4.9e+02 Score=26.33 Aligned_cols=67 Identities=12% Similarity=0.070 Sum_probs=45.0
Q ss_pred EEEEEee-----cCChhHHHHHH-HHHhCCCeEEEECCCCCCCCHHHHHHHHHHHHhcCcEEecHHHHHHHHh
Q psy8942 198 DVYVCGL-----AYDVCVGASAI-DAITIGYRTILIEDCCRGMDLDDIERTRNTILENYGSCVQSDEVKSMVE 264 (340)
Q Consensus 198 ~lii~Gv-----~T~~CV~~Ta~-dA~~~Gy~V~vv~Da~~s~~~~~~~~al~~l~~~g~~v~ts~ev~~~l~ 264 (340)
+|.|+|. --..+|..+.. .+...|.+|+++.--.-...++..+.+.+.....|+.+.-++++.+++.
T Consensus 189 kVaivg~~~~~~g~~~~Va~Sl~~~~~~lG~~v~~~~P~~~~~~~~i~~~a~~~~~~~G~~i~~~~d~~eav~ 261 (395)
T PRK07200 189 KIAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYDLMPEVVEVAKKNAKASGGSFRQVNSMEEAFK 261 (395)
T ss_pred EEEEEeccccccCCcchHHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhC
Confidence 7888885 22346666644 4467899999999866555666666666666667776655555555554
No 46
>PRK14976 5'-3' exonuclease; Provisional
Probab=26.00 E-value=98 Score=29.63 Aligned_cols=44 Identities=16% Similarity=0.064 Sum_probs=39.5
Q ss_pred chHHHHHHhCCCcEEEEEeecCChhHHHHHHHHHhCCCeEEEEC
Q psy8942 185 TSLAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIE 228 (340)
Q Consensus 185 t~L~~~L~~~gi~~lii~Gv~T~~CV~~Ta~dA~~~Gy~V~vv~ 228 (340)
+.+.++|+..|+..+..-|.+.|-.+.+-|..+...|++|++++
T Consensus 93 ~~i~~~l~~~gi~~~~~~g~EADDviatla~~~~~~g~~v~IvS 136 (281)
T PRK14976 93 PLLKKILKLAGIKWEEQPGYEADDLIGSLAKKLSKQNITVLIYS 136 (281)
T ss_pred HHHHHHHHHCCCCEEecCCcCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 46678899999999999999999888888888999999999887
No 47
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=25.94 E-value=4.1e+02 Score=26.33 Aligned_cols=68 Identities=13% Similarity=0.123 Sum_probs=43.8
Q ss_pred hHHHHHHhCCCcEEEEEeecCChhHHHHHHHHHhCCCeEEEECCCC----CCCCHHHHHHHHHHHHhcCcEEec
Q psy8942 186 SLAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCC----RGMDLDDIERTRNTILENYGSCVQ 255 (340)
Q Consensus 186 ~L~~~L~~~gi~~lii~Gv~T~~CV~~Ta~dA~~~Gy~V~vv~Da~----~s~~~~~~~~al~~l~~~g~~v~t 255 (340)
.+.+.|++..-++++|+|--. +=...|..+...|.+|+++.-.- ..++++..+...+.+.+.++.+..
T Consensus 139 ~l~~~l~~~~~~~vvVvGgG~--~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~l~~~l~~~gI~v~~ 210 (444)
T PRK09564 139 ALKELLKDEEIKNIVIIGAGF--IGLEAVEAAKHLGKNVRIIQLEDRILPDSFDKEITDVMEEELRENGVELHL 210 (444)
T ss_pred HHHHHHhhcCCCEEEEECCCH--HHHHHHHHHHhcCCcEEEEeCCcccCchhcCHHHHHHHHHHHHHCCCEEEc
Confidence 455555554567899988422 22234555677899999985432 135677777777788888876653
No 48
>COG3494 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.89 E-value=66 Score=30.68 Aligned_cols=80 Identities=18% Similarity=0.111 Sum_probs=51.4
Q ss_pred chHHHHHHhCCCcEEEEEeecCChhHHHHHHHHHhCCC--eEEEECCCCCCCCHHHHHHHHHHHHhcCcEEecHHHHHHH
Q psy8942 185 TSLAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGY--RTILIEDCCRGMDLDDIERTRNTILENYGSCVQSDEVKSM 262 (340)
Q Consensus 185 t~L~~~L~~~gi~~lii~Gv~T~~CV~~Ta~dA~~~Gy--~V~vv~Da~~s~~~~~~~~al~~l~~~g~~v~ts~ev~~~ 262 (340)
-.+-.+|+.+++++|+++|-..+-=- .+-+--...|- -..+++-.... |.......+..+...|..|+++.+++..
T Consensus 58 g~lik~l~~~~v~~vVl~G~v~~Rp~-~~~L~~d~~~l~~lp~Iv~~~~~g-DDaLLk~vi~~~E~~GfKvigahei~~~ 135 (279)
T COG3494 58 GKLIKLLKTEGVDRVVLAGGVERRPN-FRDLRPDKIGLAVLPKIVEALIRG-DDALLKAVIDFIESRGFKVIGAHEIVPG 135 (279)
T ss_pred HHHHHHHHHcCCcEEEEecccccCcc-hhhcccccchhhHHHHHHHHhccC-cHHHHHHHHHHHHhcCcEEecHhhhhhh
Confidence 47889999999999999997652110 00000000110 01122223333 5667788889999999999999999998
Q ss_pred HhcC
Q psy8942 263 VEGK 266 (340)
Q Consensus 263 l~~~ 266 (340)
+...
T Consensus 136 ll~~ 139 (279)
T COG3494 136 LLAE 139 (279)
T ss_pred hccC
Confidence 8754
No 49
>PRK10736 hypothetical protein; Provisional
Probab=25.25 E-value=3.2e+02 Score=27.41 Aligned_cols=64 Identities=9% Similarity=0.044 Sum_probs=46.5
Q ss_pred cEEEEEeecCChhHHHHHHHHHhCCCeEEEECCCCCCCCHHHHHHHHHHHHhcCcE-EecHHHHHHHHh
Q psy8942 197 TDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGMDLDDIERTRNTILENYGS-CVQSDEVKSMVE 264 (340)
Q Consensus 197 ~~lii~Gv~T~~CV~~Ta~dA~~~Gy~V~vv~Da~~s~~~~~~~~al~~l~~~g~~-v~ts~ev~~~l~ 264 (340)
+-++|+-......-+.||..|++.|-+|+.+--...+...+. -..|.+.|+. +++.++++.+|.
T Consensus 220 ~~viVvEA~~kSGsliTA~~Al~~gR~VfavPG~i~~~~s~G----~n~LI~~GA~lv~~~~Di~~~l~ 284 (374)
T PRK10736 220 KGVLVVEAALRSGSLVTARCALEQGRDVFALPGPIGNPGSEG----PHWLIKQGAYLVTSPEDILENLQ 284 (374)
T ss_pred CeEEEEEeCCCCchHHHHHHHHHhCCeEEEEcCCCCCccchh----HHHHHHCCCEEeCCHHHHHHHhh
Confidence 566776666677789999999999999999965444433332 3344456887 688889999985
No 50
>PHA03003 palmytilated EEV membrane glycoprotein; Provisional
Probab=24.64 E-value=2.5e+02 Score=27.80 Aligned_cols=39 Identities=10% Similarity=0.182 Sum_probs=28.1
Q ss_pred HHHHHHHHHhCCCeEEEECCCCCCCCHHHHHHHHHHHHhcCcEEe
Q psy8942 210 VGASAIDAITIGYRTILIEDCCRGMDLDDIERTRNTILENYGSCV 254 (340)
Q Consensus 210 V~~Ta~dA~~~Gy~V~vv~Da~~s~~~~~~~~al~~l~~~g~~v~ 254 (340)
+.....++.++|-+|.++.|+.+. ..-++.|+..|+.+.
T Consensus 65 i~~aL~~aa~rGV~Vril~D~~~~------~~~~~~L~~~Gv~v~ 103 (369)
T PHA03003 65 ILDKLKEAAESGVKVTILVDEQSG------DKDEEELQSSNINYI 103 (369)
T ss_pred HHHHHHHhccCCCeEEEEecCCCC------CccHHHHHHcCCEEE
Confidence 556666777899999999998753 223467777777654
No 51
>KOG1371|consensus
Probab=24.26 E-value=1.6e+02 Score=29.17 Aligned_cols=39 Identities=15% Similarity=0.226 Sum_probs=32.6
Q ss_pred CcEEEEEeecCChhHHHHHHHHHhCCCeEEEECCCCCCCC
Q psy8942 196 VTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGMD 235 (340)
Q Consensus 196 i~~lii~Gv~T~~CV~~Ta~dA~~~Gy~V~vv~Da~~s~~ 235 (340)
..+|.|+|-+ -.|=..|++.+.++||+|++|-.-+-+..
T Consensus 2 ~~~VLVtGga-GyiGsht~l~L~~~gy~v~~vDNl~n~~~ 40 (343)
T KOG1371|consen 2 GKHVLVTGGA-GYIGSHTVLALLKRGYGVVIVDNLNNSYL 40 (343)
T ss_pred CcEEEEecCC-cceehHHHHHHHhCCCcEEEEecccccch
Confidence 3577888865 47788999999999999999999888773
No 52
>cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate. It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants.
Probab=23.82 E-value=3.4e+02 Score=25.93 Aligned_cols=62 Identities=11% Similarity=0.058 Sum_probs=40.8
Q ss_pred HHHHHHhCCCcEEEEEeecCChhHHHHHHHHHhCCCeEEEECCCCCCCCHHHHHHHHHHHHhcCcEEecH
Q psy8942 187 LAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGMDLDDIERTRNTILENYGSCVQS 256 (340)
Q Consensus 187 L~~~L~~~gi~~lii~Gv~T~~CV~~Ta~dA~~~Gy~V~vv~Da~~s~~~~~~~~al~~l~~~g~~v~ts 256 (340)
+...+.++|.++|+.+ ...|.|.. .|..|...|++++++.+... ++. -++.|+..|+.|+..
T Consensus 61 ~l~~a~~~g~~~vv~~-SsGN~g~a-lA~~a~~~G~~~~ivvp~~~--~~~----k~~~l~~~GA~Vi~~ 122 (324)
T cd01563 61 AVSKAKELGVKAVACA-STGNTSAS-LAAYAARAGIKCVVFLPAGK--ALG----KLAQALAYGATVLAV 122 (324)
T ss_pred HHHHHHHcCCCEEEEe-CCCHHHHH-HHHHHHHcCCceEEEEeCCC--CHH----HHHHHHHcCCEEEEE
Confidence 3344455677776655 56666665 55778889999999888765 232 255667778877643
No 53
>PHA00439 exonuclease
Probab=23.51 E-value=1.3e+02 Score=29.01 Aligned_cols=43 Identities=16% Similarity=0.321 Sum_probs=36.7
Q ss_pred hHHHHHHhCCCcEEEEEeecCChhHHHHHHHHHhCCC-eEEEEC
Q psy8942 186 SLAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGY-RTILIE 228 (340)
Q Consensus 186 ~L~~~L~~~gi~~lii~Gv~T~~CV~~Ta~dA~~~Gy-~V~vv~ 228 (340)
-+.+++...|+..+..-|...|-++.+-|..+...|+ +|++++
T Consensus 101 ~i~el~~~~gi~~i~~~G~EADDvIgtla~~~~~~g~~~vvIvS 144 (286)
T PHA00439 101 FLEELMAREEWKSILEPGLEGDDVMGIIGTNPSLFGFKKAVLVS 144 (286)
T ss_pred HHHHHHHhCCCCEEeeCCccHHHHHHHHHHHHHHCCCCeEEEEe
Confidence 3456677789999999999999999888888888999 888886
No 54
>PRK03910 D-cysteine desulfhydrase; Validated
Probab=23.18 E-value=1.8e+02 Score=28.15 Aligned_cols=64 Identities=9% Similarity=-0.052 Sum_probs=38.8
Q ss_pred HHhCCCcEEEEEeecCChhHHHHHHHHHhCCCeEEEECCCCCCCCHH--HHHHHHHHHHhcCcEEe
Q psy8942 191 LEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGMDLD--DIERTRNTILENYGSCV 254 (340)
Q Consensus 191 L~~~gi~~lii~Gv~T~~CV~~Ta~dA~~~Gy~V~vv~Da~~s~~~~--~~~~al~~l~~~g~~v~ 254 (340)
.++.|.++|+-+|-.+..=-.+.|.-|...|++++++.+...+.... .-..-+..|+..|+.|+
T Consensus 59 a~~~g~~~vvt~g~s~gN~g~alA~~a~~~G~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~Ga~vi 124 (331)
T PRK03910 59 ALAQGADTLITAGAIQSNHARQTAAAAAKLGLKCVLLLENPVPTEAENYLANGNVLLDDLFGAEIH 124 (331)
T ss_pred HHHcCCCEEEEcCcchhHHHHHHHHHHHHhCCcEEEEEcCCCCcccccccCCCcHHHHHHcCCEEE
Confidence 34578888886664333334566667778999999988876553211 00122344666677654
No 55
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=22.78 E-value=3.9e+02 Score=23.14 Aligned_cols=75 Identities=15% Similarity=0.179 Sum_probs=51.3
Q ss_pred CchHHHHHHhCCCcEEEEEeec--CChhHHHHHHHHHhCCCeEEEECCCCCCCCHHHHHHHHHHHHhcCcE---EecHHH
Q psy8942 184 RTSLAKQLEAKKVTDVYVCGLA--YDVCVGASAIDAITIGYRTILIEDCCRGMDLDDIERTRNTILENYGS---CVQSDE 258 (340)
Q Consensus 184 ~t~L~~~L~~~gi~~lii~Gv~--T~~CV~~Ta~dA~~~Gy~V~vv~Da~~s~~~~~~~~al~~l~~~g~~---v~ts~e 258 (340)
+..|..+|-+++..+|+++|-. .+.............|-+|.++.-- -.+++..+.+++.+.+.+.. |+....
T Consensus 13 g~~la~~La~~~~~~~il~~r~~~~~~~~~~~i~~l~~~g~~v~~~~~D--v~d~~~v~~~~~~~~~~~~~i~gVih~ag 90 (181)
T PF08659_consen 13 GQSLARWLAERGARRLILLGRSGAPSAEAEAAIRELESAGARVEYVQCD--VTDPEAVAAALAQLRQRFGPIDGVIHAAG 90 (181)
T ss_dssp HHHHHHHHHHTT-SEEEEEESSGGGSTTHHHHHHHHHHTT-EEEEEE----TTSHHHHHHHHHTSHTTSS-EEEEEE---
T ss_pred HHHHHHHHHHcCCCEEEEeccCCCccHHHHHHHHHHHhCCCceeeeccC--ccCHHHHHHHHHHHHhccCCcceeeeeee
Confidence 5788999999999999999998 4567777777788889998887522 24577888888888766533 555555
Q ss_pred HH
Q psy8942 259 VK 260 (340)
Q Consensus 259 v~ 260 (340)
+.
T Consensus 91 ~~ 92 (181)
T PF08659_consen 91 VL 92 (181)
T ss_dssp --
T ss_pred ee
Confidence 54
No 56
>PRK08329 threonine synthase; Validated
Probab=22.75 E-value=4.2e+02 Score=25.88 Aligned_cols=62 Identities=6% Similarity=0.066 Sum_probs=42.0
Q ss_pred HHHHHHhCCCcEEEEEeecCChhHHHHHHHHHhCCCeEEEECCCCCCCCHHHHHHHHHHHHhcCcEEecH
Q psy8942 187 LAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGMDLDDIERTRNTILENYGSCVQS 256 (340)
Q Consensus 187 L~~~L~~~gi~~lii~Gv~T~~CV~~Ta~dA~~~Gy~V~vv~Da~~s~~~~~~~~al~~l~~~g~~v~ts 256 (340)
+...+++.|.++|+.+. ..|.+. +.|.-|...|++++|+.+.-. + ..-+..|+..|+.|+..
T Consensus 95 ~i~~a~~~g~~~vv~aS-sGN~g~-alA~~aa~~G~~~~v~vp~~~--~----~~k~~~~~~~GA~v~~v 156 (347)
T PRK08329 95 TVAKLKEEGINEVVIDS-SGNAAL-SLALYSLSEGIKVHVFVSYNA--S----KEKISLLSRLGAELHFV 156 (347)
T ss_pred HHHHHHHcCCCEEEEEC-CCcHHH-HHHHHHHHcCCcEEEEECCCC--h----HHHHHHHHHcCCEEEEE
Confidence 34456678999988886 556655 455566679999999877532 2 23366777788887644
No 57
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=22.70 E-value=2.3e+02 Score=20.84 Aligned_cols=57 Identities=21% Similarity=0.146 Sum_probs=38.5
Q ss_pred EEEEeecCChhHHHHHHHHHhCCCeEEEECCC--CC-CCCHHHHHHHHHHHHhcCcEEecHH
Q psy8942 199 VYVCGLAYDVCVGASAIDAITIGYRTILIEDC--CR-GMDLDDIERTRNTILENYGSCVQSD 257 (340)
Q Consensus 199 lii~Gv~T~~CV~~Ta~dA~~~Gy~V~vv~Da--~~-s~~~~~~~~al~~l~~~g~~v~ts~ 257 (340)
++|.|--.-.|-.+..+ ..+|.+|+++.-. .. .++++..+...+.|.+.++.+....
T Consensus 2 vvViGgG~ig~E~A~~l--~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~ 61 (80)
T PF00070_consen 2 VVVIGGGFIGIELAEAL--AELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHTNT 61 (80)
T ss_dssp EEEESSSHHHHHHHHHH--HHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEESE
T ss_pred EEEECcCHHHHHHHHHH--HHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEeCC
Confidence 56666555555555444 5578888887643 33 5577888888899999998876543
No 58
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=22.65 E-value=3.2e+02 Score=26.52 Aligned_cols=129 Identities=13% Similarity=0.165 Sum_probs=64.1
Q ss_pred HHHHHHhCC-CcEEEEEeecCCh------hHHHHHHH-HHhCCCeEEEE--CCCCCCCCHHHHHHHHHHHHhcCcEEecH
Q psy8942 187 LAKQLEAKK-VTDVYVCGLAYDV------CVGASAID-AITIGYRTILI--EDCCRGMDLDDIERTRNTILENYGSCVQS 256 (340)
Q Consensus 187 L~~~L~~~g-i~~lii~Gv~T~~------CV~~Ta~d-A~~~Gy~V~vv--~Da~~s~~~~~~~~al~~l~~~g~~v~ts 256 (340)
|..+|+... ++++-..|+.|.. -+.....+ ..+.|+.++++ -|...... +....|++++.+.|..+...
T Consensus 161 L~~ll~~l~~i~~~~~iri~tr~~~~~p~rit~el~~~L~~~~~~~~~~~h~dh~~Ei~-d~~~~ai~~L~~~Gi~v~~q 239 (321)
T TIGR03821 161 LDWLLNLLEQIPHLKRLRIHTRLPVVIPDRITSGLCDLLANSRLQTVLVVHINHANEID-AEVADALAKLRNAGITLLNQ 239 (321)
T ss_pred HHHHHHHHHhCCCCcEEEEecCcceeeHHHhhHHHHHHHHhcCCcEEEEeeCCChHhCc-HHHHHHHHHHHHcCCEEEec
Confidence 766665532 4555556655421 22233333 33568777765 33332222 33556888999999876444
Q ss_pred HHHHHHHhcCCCCchhhHHHHHHHHHhhcccchhhhh----------hccchhhHHHHHHh-ccCcccccceEE
Q psy8942 257 DEVKSMVEGKDRRPELGLKLALELKAKCIGSLYVRVI----------ESNNSTSQNIITLL-RIPTYLDSRYTI 319 (340)
Q Consensus 257 ~ev~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~s~~~~~~~~~~~~-~~~~~~~~~~~~ 319 (340)
.-++..+.. ..+--.++...+....+.|.|.... -+.+...+.+..|. ++|-|+-.+|.+
T Consensus 240 tvllkgiND---n~~~l~~L~~~l~~~gv~pyyl~~~~p~gg~~~f~v~~~~~~~i~~~l~~~~sG~~~P~~v~ 310 (321)
T TIGR03821 240 SVLLRGVND---NADTLAALSERLFDAGVLPYYLHLLDKVQGAAHFDVDDERARALMAELLARLPGYLVPRLVR 310 (321)
T ss_pred ceeeCCCCC---CHHHHHHHHHHHHHcCCeeCcccccCCCCCcccccCCHHHHHHHHHHHHHhCCCCccceeEE
Confidence 333322221 1222334555555555666665332 22233333444443 677666666543
No 59
>cd00138 PLDc Phospholipase D. Active site motifs; The PLD superfamily includes enzymes involved in signal transduction, lipid biosynthesis, endonucleases and open reading frames in pathogenic viruses and bacteria. PLD hydrolyzes the terminal phosphodiester bond of phospholipids to phosphatidic acid and a hydrophilic constituent. Phosphatidic acid is a compound that is heavily involved in signal transduction. The common features of the family members are that they can bind to a phosphodiester moiety, and that most of these enzymes are active as bi-lobed monomers or dimers.
Probab=22.28 E-value=4.7e+02 Score=21.95 Aligned_cols=64 Identities=13% Similarity=0.179 Sum_probs=42.2
Q ss_pred chHHHHHHhCCCcEEEEEeecC-------ChhHHHHHHHHHhCCCeEEEECCCCCCCCHHHHHHHHHHHHhc
Q psy8942 185 TSLAKQLEAKKVTDVYVCGLAY-------DVCVGASAIDAITIGYRTILIEDCCRGMDLDDIERTRNTILEN 249 (340)
Q Consensus 185 t~L~~~L~~~gi~~lii~Gv~T-------~~CV~~Ta~dA~~~Gy~V~vv~Da~~s~~~~~~~~al~~l~~~ 249 (340)
+.+.+.+++.. ++|.|+...- .-.+.....+|.++|-+|.|+.|.............+..+...
T Consensus 24 ~~i~~~I~~A~-~~I~i~~~~~~~~~~~~~~~l~~~L~~a~~rGv~V~il~~~~~~~~~~~~~~~~~~l~~~ 94 (176)
T cd00138 24 DALLEAISNAK-KSIYIASFYLSPLITEYGPVILDALLAAARRGVKVRILVDEWSNTDLKISSAYLDSLRAL 94 (176)
T ss_pred HHHHHHHHhhh-eEEEEEEeEecccccccchHHHHHHHHHHHCCCEEEEEEcccccCCchHHHHHHHHHHHh
Confidence 44555555544 4566555443 4578888889999999999999988776643334445555554
No 60
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=22.17 E-value=5e+02 Score=25.37 Aligned_cols=78 Identities=18% Similarity=0.221 Sum_probs=47.6
Q ss_pred chHHHHHHhCCCcEEE-EEeecCChhHHHHHHHHH-hCCCeEEEECCCCCCCCHHHHHHHHHHHHhcC---------cEE
Q psy8942 185 TSLAKQLEAKKVTDVY-VCGLAYDVCVGASAIDAI-TIGYRTILIEDCCRGMDLDDIERTRNTILENY---------GSC 253 (340)
Q Consensus 185 t~L~~~L~~~gi~~li-i~Gv~T~~CV~~Ta~dA~-~~Gy~V~vv~Da~~s~~~~~~~~al~~l~~~g---------~~v 253 (340)
..|.+.++..|.++++ |+|-.+- +. ..+.+.+ +.|.++.+..+.....+.+..+.+.+.++..+ +.+
T Consensus 12 ~~l~~~~~~~g~~~~livtd~~~~-~~-~~~~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs~ 89 (367)
T cd08182 12 AKLPSLLKGLGGKRVLLVTGPRSA-IA-SGLTDILKPLGTLVVVFDDVQPNPDLEDLAAGIRLLREFGPDAVLAVGGGSV 89 (367)
T ss_pred HHHHHHHHhcCCCeEEEEeCchHH-HH-HHHHHHHHHcCCeEEEEcCcCCCcCHHHHHHHHHHHHhcCcCEEEEeCCcHH
Confidence 3566777777765444 4443332 22 3333433 56788887777777777777777777777653 346
Q ss_pred ecHHHHHHHHh
Q psy8942 254 VQSDEVKSMVE 264 (340)
Q Consensus 254 ~ts~ev~~~l~ 264 (340)
++..-.+..+.
T Consensus 90 ~D~aK~ia~~~ 100 (367)
T cd08182 90 LDTAKALAALL 100 (367)
T ss_pred HHHHHHHHHHH
Confidence 66666665554
No 61
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=21.91 E-value=80 Score=29.69 Aligned_cols=67 Identities=25% Similarity=0.179 Sum_probs=46.9
Q ss_pred HHHHHHHHhcCCCCchhhHHHHHHHHHhhcccchhhhhhccchhhHHHHHHh--ccCcccccceEEEEE
Q psy8942 256 SDEVKSMVEGKDRRPELGLKLALELKAKCIGSLYVRVIESNNSTSQNIITLL--RIPTYLDSRYTIVWY 322 (340)
Q Consensus 256 s~ev~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 322 (340)
|+|+...|+..+...+=|+|+..-.+.......-+.+|+...+.=+-++|+- ..=.-|...|||||.
T Consensus 136 WdEVKDrL~~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviV 204 (253)
T COG1117 136 WDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIV 204 (253)
T ss_pred HHHhHHHhhCCccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEE
Confidence 6789999988877766566666666665566667889988887766666651 222334588999874
No 62
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=21.77 E-value=5.3e+02 Score=25.36 Aligned_cols=79 Identities=13% Similarity=0.143 Sum_probs=43.5
Q ss_pred chHHHHHHhCCCcEEEEE-eecCCh-hHHHHHHHHH-hCCCeEEEECCCCCCCCHHHHHHHHHHHHhcC---------cE
Q psy8942 185 TSLAKQLEAKKVTDVYVC-GLAYDV-CVGASAIDAI-TIGYRTILIEDCCRGMDLDDIERTRNTILENY---------GS 252 (340)
Q Consensus 185 t~L~~~L~~~gi~~lii~-Gv~T~~-CV~~Ta~dA~-~~Gy~V~vv~Da~~s~~~~~~~~al~~l~~~g---------~~ 252 (340)
.+|.+.|++.|.++++|+ |-.... -...-+.+.+ +.|.++.+..+.....+.+..+.+.+.++..+ +.
T Consensus 15 ~~l~~~l~~~g~~~~lvvt~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIaiGGGS 94 (374)
T cd08189 15 AQLPAAISQLGVKKVLIVTDKGLVKLGLLDKVLEALEGAGIEYAVYDGVPPDPTIENVEAGLALYRENGCDAILAVGGGS 94 (374)
T ss_pred HHHHHHHHhcCCCeEEEEeCcchhhcccHHHHHHHHHhcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 356677777775555544 321111 1223344444 45777777766666666666677776666543 24
Q ss_pred EecHHHHHHHH
Q psy8942 253 CVQSDEVKSMV 263 (340)
Q Consensus 253 v~ts~ev~~~l 263 (340)
++++.-.+..+
T Consensus 95 ~~D~aK~ia~~ 105 (374)
T cd08189 95 VIDCAKAIAAR 105 (374)
T ss_pred HHHHHHHHHHH
Confidence 55555555444
No 63
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=21.60 E-value=4.6e+02 Score=25.86 Aligned_cols=64 Identities=14% Similarity=0.122 Sum_probs=30.4
Q ss_pred hHHHHHHhCCCcEEEEEeecC-C-hhHHHHHHHHH-hCCCeEEEECCCCCCCCHHHHHHHHHHHHhc
Q psy8942 186 SLAKQLEAKKVTDVYVCGLAY-D-VCVGASAIDAI-TIGYRTILIEDCCRGMDLDDIERTRNTILEN 249 (340)
Q Consensus 186 ~L~~~L~~~gi~~lii~Gv~T-~-~CV~~Ta~dA~-~~Gy~V~vv~Da~~s~~~~~~~~al~~l~~~ 249 (340)
.|.+.+++.+.+-++|+|-.+ . .-....+.+++ +.|+++.+..+.....+.+..+.+++.++..
T Consensus 19 ~l~~~~~~~~~r~livt~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~ 85 (382)
T cd08187 19 ELGKELKKYGKKVLLVYGGGSIKKNGLYDRVIASLKEAGIEVVELGGVEPNPRLETVREGIELCKEE 85 (382)
T ss_pred HHHHHHHHhCCEEEEEeCCcHHHhcCcHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHHc
Confidence 444555555544444544211 1 11223333333 3566666665555555555555555555543
No 64
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=21.21 E-value=1.7e+02 Score=27.47 Aligned_cols=94 Identities=22% Similarity=0.415 Sum_probs=58.4
Q ss_pred ccccccc---ccCCCCcccHHHHHHHHhhh-h---hc----cCCCCeEEEEecccc-----cccCCCccc---cccccCC
Q psy8942 2 AEKNTLF---DWNQDGLIDREEFAFCWNRW-I---KV----IVRPKSALLVINVQN-----DFVSGTLNM---SQRSAKQ 62 (340)
Q Consensus 2 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~---~~----i~~~ktALLVIDmQn-----dF~~G~l~~---~~~~~~~ 62 (340)
.+||.-| ||+ .-.+.+.+...|... . ++ -...++.+|-+|=|+ ||..|.-+. .++-..|
T Consensus 38 ~~~nP~f~~edw~--t~fT~~~lk~vw~~~~ldl~~~a~~G~~APns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCP 115 (237)
T PF00837_consen 38 LEKNPSFCYEDWG--TFFTLESLKAVWKVMWLDLFKEAKLGGPAPNSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCP 115 (237)
T ss_pred hccCCCCChhHhh--hhhhHHHHHHHHHHHHHHcccceeCCCCCCCCceEeeCCCcceeHHHhccCCCCeEEEcccccch
Confidence 3455556 333 556777776666543 1 11 355678999999999 677542111 1111224
Q ss_pred ChHHHHHHHHHHHHHhcc--C-cEEEEeccCCCCccch
Q psy8942 63 NGLQVIEPINKLLDTVNF--N-AVFYSLDWHPSNHISF 97 (340)
Q Consensus 63 ~~~~iv~~I~~Li~~aR~--~-~Vi~t~d~h~~~h~~f 97 (340)
....-++..+++++.+.. + -+||+...||.+...+
T Consensus 116 pF~~~l~~f~~l~~~f~d~adFl~VYI~EAHpsDgW~~ 153 (237)
T PF00837_consen 116 PFMAKLDAFKRLVEDFSDVADFLIVYIEEAHPSDGWAF 153 (237)
T ss_pred HHHHHHHHHHHHHHHhhhhhheehhhHhhhCcCCCccC
Confidence 577777788888888764 3 5789999999875433
No 65
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=20.98 E-value=6.5e+02 Score=24.76 Aligned_cols=68 Identities=15% Similarity=0.076 Sum_probs=45.9
Q ss_pred EEEEEeecCChhHHHHHHHHHhCCCeEEEECCCCCCCCHHHHHHHHHHHHhcCcEEecHHHHHHHHhc
Q psy8942 198 DVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGMDLDDIERTRNTILENYGSCVQSDEVKSMVEG 265 (340)
Q Consensus 198 ~lii~Gv~T~~CV~~Ta~dA~~~Gy~V~vv~Da~~s~~~~~~~~al~~l~~~g~~v~ts~ev~~~l~~ 265 (340)
+|.++|-..+.-+.+.+..+...|++++++..-..-.+.+..+.+.+.....|+.+.-+.++.+.+.+
T Consensus 158 ~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~i~~~~d~~ea~~~ 225 (336)
T PRK03515 158 TLAYAGDARNNMGNSLLEAAALTGLDLRLVAPKACWPEAALVTECRALAQKNGGNITLTEDIAEGVKG 225 (336)
T ss_pred EEEEeCCCcCcHHHHHHHHHHHcCCEEEEECCchhcCcHHHHHHHHHHHHHcCCeEEEEcCHHHHhCC
Confidence 77888864344333445555667999999998666566666666666777778777666666666653
No 66
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=20.38 E-value=3.9e+02 Score=24.19 Aligned_cols=64 Identities=13% Similarity=-0.005 Sum_probs=41.6
Q ss_pred HHHHHHhCCC--cEEEEEeecCChhHHHHHHHHHhCCCeEEEECCCCCCCCHHHHHHHHHHHHhcCcEEecHH
Q psy8942 187 LAKQLEAKKV--TDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGMDLDDIERTRNTILENYGSCVQSD 257 (340)
Q Consensus 187 L~~~L~~~gi--~~lii~Gv~T~~CV~~Ta~dA~~~Gy~V~vv~Da~~s~~~~~~~~al~~l~~~g~~v~ts~ 257 (340)
+...+++.|. ...+++.-..|.+ .+.|..|...|++++++.+.-. + ..-++.|...|+.|+..+
T Consensus 38 ~l~~a~~~g~~~~~~vv~~ssGN~g-~alA~~a~~~g~~~~v~~p~~~--~----~~~~~~~~~~Ga~v~~~~ 103 (244)
T cd00640 38 LILLAEEEGKLPKGVIIESTGGNTG-IALAAAAARLGLKCTIVMPEGA--S----PEKVAQMRALGAEVVLVP 103 (244)
T ss_pred HHHHHHHcCCCCCCEEEEeCCcHHH-HHHHHHHHHcCCCEEEEECCCC--C----HHHHHHHHHCCCEEEEEC
Confidence 3444555663 4455555556777 4556666669999999988765 2 334667788888876654
No 67
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=20.22 E-value=7e+02 Score=24.43 Aligned_cols=78 Identities=13% Similarity=0.095 Sum_probs=48.3
Q ss_pred hHHHHHHhCC--C--cEEEEEeecCChhHHHH-HHHHHhCCCeEEEECCCCCCCCHHHHHHHHHHHHhcCcEEecHHHHH
Q psy8942 186 SLAKQLEAKK--V--TDVYVCGLAYDVCVGAS-AIDAITIGYRTILIEDCCRGMDLDDIERTRNTILENYGSCVQSDEVK 260 (340)
Q Consensus 186 ~L~~~L~~~g--i--~~lii~Gv~T~~CV~~T-a~dA~~~Gy~V~vv~Da~~s~~~~~~~~al~~l~~~g~~v~ts~ev~ 260 (340)
||..+.+..| + .+|.++|-..+. |..+ +..+...|++|+++..-.--.+.+..+.+-+.....|+.+.-+.++.
T Consensus 142 Dl~Ti~e~~g~~l~gl~ia~vGD~~~~-v~~Sl~~~~~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~~~~~~d~~ 220 (334)
T PRK01713 142 DVLTMIENCDKPLSEISYVYIGDARNN-MGNSLLLIGAKLGMDVRICAPKALLPEASLVEMCEKFAKESGARITVTDDID 220 (334)
T ss_pred HHHHHHHHcCCCcCCcEEEEECCCccC-HHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEcCHH
Confidence 3444444443 3 378888876455 5454 55666789999999886665555555555444455677766556666
Q ss_pred HHHh
Q psy8942 261 SMVE 264 (340)
Q Consensus 261 ~~l~ 264 (340)
..+.
T Consensus 221 ~a~~ 224 (334)
T PRK01713 221 KAVK 224 (334)
T ss_pred HHhC
Confidence 6654
No 68
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=20.14 E-value=2.6e+02 Score=28.40 Aligned_cols=65 Identities=15% Similarity=0.140 Sum_probs=40.0
Q ss_pred EEEEEeecCChhHHHHHHHHHhCCCeEEEECCCCCCCCHHHHHHHHHHHH--hcCcEEecHHHHHHHHhcC
Q psy8942 198 DVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGMDLDDIERTRNTIL--ENYGSCVQSDEVKSMVEGK 266 (340)
Q Consensus 198 ~lii~Gv~T~~CV~~Ta~dA~~~Gy~V~vv~Da~~s~~~~~~~~al~~l~--~~g~~v~ts~ev~~~l~~~ 266 (340)
.++|+| +-.+=...|+.+.+.|.+|.+++...+..... ...+..+. ..+..+.+..+.+.+|...
T Consensus 4 DviIIG--~G~aGl~aA~~la~~g~~v~vi~~~~~~~~~~--~g~~~~l~~~~~g~~~~~~~~~~~~l~~~ 70 (422)
T PRK05329 4 DVLVIG--GGLAGLTAALAAAEAGKRVALVAKGQGALHFS--SGSIDLLGYLPDGQPVSDPFEALAALAEQ 70 (422)
T ss_pred CEEEEC--ccHHHHHHHHHHHHCCCcEEEEECCCCcchhc--hhhhhhcccCCCCCCchhHHHHHHHHHHh
Confidence 356666 34555667888899999999998654332111 11222222 3456677777888888764
Done!