RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8942
(340 letters)
>gnl|CDD|238493 cd01011, nicotinamidase, Nicotinamidase/pyrazinamidase (PZase).
Nicotinamidase, a ubiquitous enzyme in prokaryotes,
converts nicotinamide to nicotinic acid (niacin) and
ammonia, which in turn can be recycled to make
nicotinamide adenine dinucleotide (NAD). The same enzyme
is also called pyrazinamidase, because in converts the
tuberculosis drug pyrazinamide (PZA) into its active
form pyrazinoic acid (POA).
Length = 196
Score = 223 bits (571), Expect = 7e-73
Identities = 78/209 (37%), Positives = 107/209 (51%), Gaps = 25/209 (11%)
Query: 36 KSALLVINVQNDFVS-GTLNMSQRSAKQNGLQVIEPINKLLDTVNFNAVFYSLDWHPSNH 94
ALLV++VQNDF G L + G ++ IN LL ++ V + DWHP+NH
Sbjct: 1 TDALLVVDVQNDFCPGGALAVPG------GDAIVPLINALLSLFQYDLVVATQDWHPANH 54
Query: 95 ISFIDNIKLRKIHYTSTVQPEDAQTYDTVVFDGDTPMKQKLWPRHCVQDSWGAELHKDLK 154
SF N + T P Q LWP HCVQ + GAELH L
Sbjct: 55 ASFASN-------------HPGQMPFIT-----LPPGPQVLWPDHCVQGTPGAELHPGLP 96
Query: 155 IVDNAIKVYMGTDPEEDSYSVFWDSKKLKRTSLAKQLEAKKVTDVYVCGLAYDVCVGASA 214
+ D + V GT+P+ DSYS F+D+ + T LA+ L + + V V GLA D CV A+A
Sbjct: 97 VPDIDLIVRKGTNPDIDSYSAFFDNDRRSSTGLAEYLRERGIDRVDVVGLATDYCVKATA 156
Query: 215 IDAITIGYRTILIEDCCRGMDLDDIERTR 243
+DA+ G+ ++ED CR +D + IER
Sbjct: 157 LDALKAGFEVRVLEDACRAVDPETIERAI 185
>gnl|CDD|240363 PTZ00331, PTZ00331, alpha/beta hydrolase; Provisional.
Length = 212
Score = 192 bits (490), Expect = 2e-60
Identities = 80/223 (35%), Positives = 118/223 (52%), Gaps = 29/223 (13%)
Query: 28 WIKVIVRPKSALLVINVQNDFVS-GTLNMSQRSAKQNGLQVIEPINKLLDTVNFNAVFYS 86
I V AL++++VQNDF G+L A + +VI IN++ + +F+ V +
Sbjct: 5 CITVSST-NDALIIVDVQNDFCKGGSL------AVPDAEEVIPVINQVRQSHHFDLVVAT 57
Query: 87 LDWHPSNHISFIDNIKLRKIHYTSTVQPEDAQTYDTVVFDGDTPMKQKLWPRHCVQDSWG 146
DWHP NHISF S T Q LWP HCVQ + G
Sbjct: 58 QDWHPPNHISFA-----------SNHGKPKILPDGTT---------QGLWPPHCVQGTKG 97
Query: 147 AELHKDLKIVDNAIKVYMGTDPEEDSYSVFWDSKKLKRTSLAKQLEAKKVTDVYVCGLAY 206
A+LHKDL + I + GT+ + DSYS F + K +T LA+ L+A V V++CGLA+
Sbjct: 98 AQLHKDLVVERIDIIIRKGTNRDVDSYSAFDNDKG-SKTGLAQILKAHGVRRVFICGLAF 156
Query: 207 DVCVGASAIDAITIGYRTILIEDCCRGMDLDDIERTRNTILEN 249
D CV +A+DA+ +G++ +++ED R +D D I + R +LE
Sbjct: 157 DFCVLFTALDAVKLGFKVVVLEDATRAVDPDAISKQRAELLEA 199
>gnl|CDD|183228 PRK11609, PRK11609, nicotinamidase/pyrazinamidase; Provisional.
Length = 212
Score = 137 bits (348), Expect = 3e-39
Identities = 74/207 (35%), Positives = 104/207 (50%), Gaps = 30/207 (14%)
Query: 36 KSALLVINVQNDFVS-GTLNMSQRSAKQNGLQVIEPINKLLDTVNFN--AVFYSLDWHPS 92
K ALL++++QNDF + G L A G I+ N+L+D V S DWHP+
Sbjct: 2 KRALLLVDLQNDFCAGGAL------AVPEGDSTIDVANRLIDWCQSRGIPVIASQDWHPA 55
Query: 93 NHISFIDNIKLRKIHYTSTVQPEDAQTYDTVVFDGDTPMKQKLWPRHCVQDSWGAELHKD 152
NH SF N A+ DG + Q WP HCVQ+S GA LH
Sbjct: 56 NHGSFASN--------------HGAEPGTQGELDG---LPQTWWPDHCVQNSEGAALHPL 98
Query: 153 LKIVDNAIK--VYMGTDPEEDSYSVFWDSKKLKRTSLAKQLEAKKVTDVYVCGLAYDVCV 210
L AI + G +P DSYS F+D+ ++T+L L +T++ V GLA D CV
Sbjct: 99 LN--QKAIDAVFHKGENPLIDSYSAFFDNGHRQKTALDDWLREHGITELIVMGLATDYCV 156
Query: 211 GASAIDAITIGYRTILIEDCCRGMDLD 237
+ +DA+ +GY+ +I D CRG++L
Sbjct: 157 KFTVLDALALGYQVNVITDGCRGVNLQ 183
>gnl|CDD|238245 cd00431, cysteine_hydrolases, Cysteine hydrolases; This family
contains amidohydrolases, like CSHase
(N-carbamoylsarcosine amidohydrolase), involved in
creatine metabolism and nicotinamidase, converting
nicotinamide to nicotinic acid and ammonia in the
pyridine nucleotide cycle. It also contains
isochorismatase, an enzyme that catalyzes the conversion
of isochorismate to 2,3-dihydroxybenzoate and pyruvate,
via the hydrolysis of the vinyl ether bond, and other
related enzymes with unknown function.
Length = 161
Score = 125 bits (315), Expect = 5e-35
Identities = 59/211 (27%), Positives = 93/211 (44%), Gaps = 53/211 (25%)
Query: 38 ALLVINVQNDFVSGTLNMSQRSAKQNGLQVIEPINKLLDT-VNFNA-VFYSLDWHPSNHI 95
ALLV+++QNDFV G + +++ IN+LL V ++ DWHP +
Sbjct: 1 ALLVVDMQNDFVPGGGLLLP-----GADELVPNINRLLAAARAAGIPVIFTRDWHPPDDP 55
Query: 96 SFIDNIKLRKIHYTSTVQPEDAQTYDTVVFDGDTPMKQKLWPRHCVQDSWGAELHKDLKI 155
F + LWP HCV+ + GAEL +L
Sbjct: 56 EFAEL----------------------------------LWPPHCVKGTEGAELVPELAP 81
Query: 156 VDNAIKVYMGTDPEEDSYSVFWDSKKLKRTSLAKQLEAKKVTDVYVCGLAYDVCVGASAI 215
+ + + + E+ YS F+ T L + L + + + VCG+A D+CV A+A
Sbjct: 82 LPDDLVI------EKTRYSAFYG------TDLDELLRERGIDTLVVCGIATDICVLATAR 129
Query: 216 DAITIGYRTILIEDCCRGMDLDDIERTRNTI 246
DA+ +GYR I++ED C D +D E +
Sbjct: 130 DALDLGYRVIVVEDACATRDEEDHEAALERL 160
>gnl|CDD|224254 COG1335, PncA, Amidases related to nicotinamidase [Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 205
Score = 112 bits (282), Expect = 1e-29
Identities = 61/210 (29%), Positives = 91/210 (43%), Gaps = 38/210 (18%)
Query: 32 IVRPKSALLVINVQNDFVSGTLNMSQRSAKQNGLQVIEPINKLLDTVNFNA--VFYSLDW 89
+ K+AL+V+++QNDF+ G +++ +G ++I I L+D V + DW
Sbjct: 1 LDPAKTALIVVDMQNDFMPGGGSLAA--LGVDGRKIIPNIAALVDAARAAGQPVIATQDW 58
Query: 90 HPSNHISFIDNIKLRKIHYTSTVQPEDAQTYDTVVFDGDTPMKQKLWPRHCVQDSWGAEL 149
HP++ S K WPRH V+ + GAEL
Sbjct: 59 HPADISSLAG---------------------------SPESSKLFPWPRHDVKGTPGAEL 91
Query: 150 HKDL-KIVDNAIKVYMGTDPEEDSYSVFWDSKKLKRTSLAKQLEAKKVTDVYVCGLAYDV 208
+L VD+A V ++ YS F T L L + V VCG+A D+
Sbjct: 92 LGELPPAVDDAQLVPEDVIFKKHGYSAFAG------TDLDDILRNLGIDTVVVCGIATDI 145
Query: 209 CVGASAIDAITIGYRTILIEDCCRGMDLDD 238
CV A+A DA +GY+ L+ED G LD
Sbjct: 146 CVLATARDAFDLGYQVTLVEDATAGSSLDR 175
>gnl|CDD|216156 pfam00857, Isochorismatase, Isochorismatase family. This family
are hydrolase enzymes.
Length = 173
Score = 90.5 bits (225), Expect = 7e-22
Identities = 42/206 (20%), Positives = 72/206 (34%), Gaps = 57/206 (27%)
Query: 37 SALLVINVQNDFVSGTLNMSQRSAKQNGLQVIEPINKLLDTVNFNA--VFYSLDWHPSNH 94
+ALLVI++QN F SG ++ + ++E I++LL V ++
Sbjct: 1 TALLVIDMQNGFFSGGPKVAGIA------AILENISRLLKAARAAGIPVIFTRH------ 48
Query: 95 ISFIDNIKLRKIHYTSTVQPEDAQTYDTVVFDGDTPMKQ--KLWPRHCVQDSWGAELHKD 152
V + D +WGAEL +
Sbjct: 49 -----------------------------VPEPDDADDALKDRPSGAFPPGTWGAELVPE 79
Query: 153 LKIVDNAIKVYMGTDPEEDSYSVFWDSKKLKRTSLAKQLEAKKVTDVYVCGLAYDVCVGA 212
L + V ++ +S F T L + L + + + G+A DVCV +
Sbjct: 80 LAPLPGDPVV------DKTRFSAFAT------TDLDEILRELGIDTLVLAGVATDVCVLS 127
Query: 213 SAIDAITIGYRTILIEDCCRGMDLDD 238
+A DA GY +++ D C +
Sbjct: 128 TARDAFDRGYEVVVVSDACASRSPEA 153
>gnl|CDD|238497 cd01015, CSHase, N-carbamoylsarcosine amidohydrolase (CSHase)
hydrolyzes N-carbamoylsarcosine to sarcosine, carbon
dioxide and ammonia. CSHase is involved in one of the
two alternative pathways for creatinine degradation to
glycine in microorganisms.This CSHase-containing pathway
degrades creatinine via N-methylhydantoin
N-carbamoylsarcosine and sarcosine to glycine. Enzymes
of this pathway are used in the diagnosis for renal
disfunction, for determining creatinine levels in urine
and serum.
Length = 179
Score = 48.9 bits (117), Expect = 4e-07
Identities = 18/47 (38%), Positives = 29/47 (61%)
Query: 185 TSLAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCC 231
TSLA L A+ V + V G + C+ A+A+DA+ G+R I++ +C
Sbjct: 103 TSLAATLTARGVDTLIVAGCSTSGCIRATAVDAMQHGFRPIVVRECV 149
>gnl|CDD|238496 cd01014, nicotinamidase_related, Nicotinamidase_ related
amidohydrolases. Cysteine hydrolases of unknown
function that share the catalytic triad with other
amidohydrolases, like nicotinamidase, which converts
nicotinamide to nicotinic acid and ammonia.
Length = 155
Score = 47.6 bits (114), Expect = 1e-06
Identities = 36/198 (18%), Positives = 61/198 (30%), Gaps = 68/198 (34%)
Query: 38 ALLVINVQNDFVSGTLNMSQRSAKQNGLQVIEPINKLLDTVNFNAVFYSLDWHPSNHISF 97
ALLVI+VQN + G L N +E I L+ +
Sbjct: 1 ALLVIDVQNGYFDGGL------PPLNNEAALENIAALIA-------------------AA 35
Query: 98 IDNIKLRKIHYTSTVQPEDAQTYDTVVFDGDTPMKQKLWPRHCVQDSWGAELHKDLKIVD 157
+ IH V+ D + F + G E+H +L ++
Sbjct: 36 RAA-GIPVIH----VRHIDDEGGS---FAPGSE---------------GWEIHPELAPLE 72
Query: 158 NAIKVYMGTDPEEDSYSVFWDSKKL----KRTSLAKQLEAKKVTDVYVCGLAYDVCVGAS 213
+ K + T L + L + + +CG ++CV +
Sbjct: 73 GETVIE----------------KTVPNAFYGTDLEEWLREAGIDHLVICGAMTEMCVDTT 116
Query: 214 AIDAITIGYRTILIEDCC 231
A +GY ++ D C
Sbjct: 117 VRSAFDLGYDVTVVADAC 134
>gnl|CDD|238494 cd01012, YcaC_related, YcaC related amidohydrolases; E.coli YcaC is
an homooctameric hydrolase with unknown specificity.
Despite its weak sequence similarity, it is structurally
related to other amidohydrolases and shares conserved
active site residues with them. Multimerisation
interface seems not to be conserved in all members.
Length = 157
Score = 40.3 bits (95), Expect = 4e-04
Identities = 15/45 (33%), Positives = 22/45 (48%)
Query: 187 LAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCC 231
K L+A V + GL VCV +A+D + GY ++ D C
Sbjct: 79 FRKALKATGRKQVVLAGLETHVCVLQTALDLLEEGYEVFVVADAC 123
>gnl|CDD|183137 PRK11440, PRK11440, putative hydrolase; Provisional.
Length = 188
Score = 33.2 bits (76), Expect = 0.12
Identities = 16/75 (21%), Positives = 36/75 (48%)
Query: 185 TSLAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGMDLDDIERTRN 244
T L QL + + + +CG++ ++ V ++A +A +G+ ++ ED C + + + N
Sbjct: 110 TDLELQLRRRGIDTIVLCGISTNIGVESTARNAWELGFNLVIAEDACSAASAEQHQNSMN 169
Query: 245 TILENYGSCVQSDEV 259
I +E+
Sbjct: 170 HIFPRIARVRSVEEI 184
>gnl|CDD|224452 COG1535, EntB, Isochorismate hydrolase [Secondary metabolites
biosynthesis, transport, and catabolism].
Length = 218
Score = 32.9 bits (75), Expect = 0.17
Identities = 22/104 (21%), Positives = 37/104 (35%), Gaps = 11/104 (10%)
Query: 130 PMKQKLWPRHCVQDSWGAELHK---DLKIVDNAIKVYMGTDPEEDSYSVF-WDSKKLKRT 185
P +Q R ++D WG L K+VD P D + W R+
Sbjct: 80 PGEQSPEDRALLKDFWGPGLTASPEQQKVVDELA-------PGADDTVLTKWRYSAFHRS 132
Query: 186 SLAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIED 229
L + L K + + G+ + +A DA + ++ D
Sbjct: 133 PLLQMLREKGRDQLIITGVYAHIGCLTTATDAFMRDIQPFMVAD 176
>gnl|CDD|178229 PLN02621, PLN02621, nicotinamidase.
Length = 197
Score = 30.9 bits (70), Expect = 0.74
Identities = 26/103 (25%), Positives = 45/103 (43%), Gaps = 12/103 (11%)
Query: 128 DTPMKQKLWPRHCVQD-SWGAELHKDLKIVDNAIKVYMGTDPEEDSYSVFWDSKKLKRTS 186
D M + W + D + AEL ++ V +V E+ +YS F++ T
Sbjct: 69 DYGMLGEWWDGDLILDGTTEAELMPEIGRVTGPDEVV-----EKSTYSAFYN------TR 117
Query: 187 LAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIED 229
L ++L V +V V G+ ++C +A +A G+R D
Sbjct: 118 LEERLRKIGVKEVIVTGVMTNLCCETTAREAFVRGFRVFFSTD 160
>gnl|CDD|227649 COG5345, COG5345, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 358
Score = 29.8 bits (67), Expect = 2.2
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 86 SLDWHPSNHISFIDNIKLRKIHYTSTVQPEDAQTYDTVVFD 126
S D N + F+D I I TS + PE A+ + FD
Sbjct: 223 SFDQRADNLVQFVDRIA-TDIGNTSAILPERAENVNEGWFD 262
>gnl|CDD|200946 pfam00036, efhand, EF hand. The EF-hands can be divided into two
classes: signaling proteins and buffering/transport
proteins. The first group is the largest and includes
the most well-known members of the family such as
calmodulin, troponin C and S100B. These proteins
typically undergo a calcium-dependent conformational
change which opens a target binding site. The latter
group is represented by calbindin D9k and do not
undergo calcium dependent conformational changes.
Length = 29
Score = 26.3 bits (59), Expect = 2.2
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 7 LFDWNQDGLIDREEF 21
FD + DG I EEF
Sbjct: 8 EFDKDGDGKISFEEF 22
>gnl|CDD|163356 TIGR03614, RutB, pyrimidine utilization protein B. RN RM
PMID:16540542 RT A previously undescribed pathway for
pyrimidine catabolism. RA Loh KD, Gyaneshwar P,
Markenscoff Papadimitriou E, Fong R, Kim KS, Parales R,
Zhou Z, Inwood W, Kustu S RL Proc Natl Acad Sci U S A.
2006 Mar 28;103(13):5114-9. Epub 2006 Mar 15.
Length = 226
Score = 29.4 bits (66), Expect = 2.3
Identities = 46/215 (21%), Positives = 83/215 (38%), Gaps = 64/215 (29%)
Query: 37 SALLVINVQNDFVS--GTLNMSQRSAKQNGLQVIEPINKLLDTVNFNA--VFY------- 85
+AL+V+++QN + + G L+++ VIE I K + V Y
Sbjct: 16 TALIVVDMQNAYATPGGYLDLAGFDVSGTK-PVIENIKKAVTAARAAGIQVIYFQNGWDN 74
Query: 86 ---------SLDWHPSNHISFIDNIKLRKIHYTSTVQPEDAQTYDTVVFDGDTPMKQKLW 136
S +WH SN + +RK +PE ++ KL
Sbjct: 75 DYVEAGGPGSPNWHKSNALK-----TMRK-------RPE---------------LQGKLL 107
Query: 137 PRHCVQDSWGAELHKDLKIVDNAIKVYMGTDPEEDSYSVFWDSKKLKRTSLAKQLEAKKV 196
+ +W EL +L+ I + + YS F++ T L L A+ +
Sbjct: 108 AK----GTWDYELVDELQPQPGDIVL------PKPRYSGFFN------TPLDSMLRARGI 151
Query: 197 TDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCC 231
++ G+A +VCV ++ D + Y +++ED
Sbjct: 152 RNLVFTGIATNVCVESTLRDGFHLEYFGVVLEDAT 186
>gnl|CDD|222407 pfam13833, EF_hand_6, EF-hand domain pair.
Length = 53
Score = 27.1 bits (61), Expect = 2.4
Identities = 9/21 (42%), Positives = 10/21 (47%)
Query: 7 LFDWNQDGLIDREEFAFCWNR 27
FD + DG I EEF R
Sbjct: 32 EFDTDGDGKISFEEFCVLLQR 52
>gnl|CDD|236586 PRK09605, PRK09605, bifunctional UGMP family
protein/serine/threonine protein kinase; Validated.
Length = 535
Score = 29.5 bits (67), Expect = 3.0
Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 13/60 (21%)
Query: 221 GYRTILIEDCCRGMDL-----------DDIERTRNTILENYGSCVQSDEVKSMVEGKDRR 269
G + LIED + +DL D E LE Y +++V ++ ++R
Sbjct: 474 GKYSDLIED--KAVDLHVLKQSLESTHYDFEELWEAFLEGYRETEGAEDVLERLKEIEKR 531
>gnl|CDD|238008 cd00051, EFh, EF-hand, calcium binding motif; A diverse
superfamily of calcium sensors and calcium signal
modulators; most examples in this alignment model have
2 active canonical EF hands. Ca2+ binding induces a
conformational change in the EF-hand motif, leading to
the activation or inactivation of target proteins.
EF-hands tend to occur in pairs or higher copy numbers.
Length = 63
Score = 26.7 bits (60), Expect = 3.7
Identities = 7/20 (35%), Positives = 9/20 (45%)
Query: 7 LFDWNQDGLIDREEFAFCWN 26
LFD + DG I +E
Sbjct: 8 LFDKDGDGTISADELKAALK 27
>gnl|CDD|232799 TIGR00049, TIGR00049, Iron-sulfur cluster assembly accessory
protein. Proteins in this subfamily appear to be
associated with the process of FeS-cluster assembly.
The HesB proteins are associated with the nif gene
cluster and the Rhizobium gene IscN has been shown to
be required for nitrogen fixation. Nitrogenase includes
multiple FeS clusters and many genes for their
assembly. The E. coli SufA protein is associated with
SufS, a NifS homolog and SufD which are involved in the
FeS cluster assembly of the FhnF protein. The
Azotobacter protein IscA (homologs of which are also
found in E.coli) is associated which IscS, another NifS
homolog and IscU, a nifU homolog as well as other
factors consistent with a role in FeS cluster
chemistry. A homolog from Geobacter contains a
selenocysteine in place of an otherwise invariant
cysteine, further suggesting a role in redox chemistry
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Other].
Length = 105
Score = 27.2 bits (61), Expect = 4.6
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 29 IKVIVRPKSALLVINVQNDFVSG 51
+KV+V PKS + + D+V
Sbjct: 58 VKVVVDPKSLPYLDGSEIDYVEE 80
>gnl|CDD|205383 pfam13202, EF_hand_3, EF hand.
Length = 25
Score = 25.3 bits (57), Expect = 4.9
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 7 LFDWNQDGLIDREEF 21
FD N DG I +EE
Sbjct: 7 QFDTNGDGKISKEEL 21
>gnl|CDD|236216 PRK08277, PRK08277, D-mannonate oxidoreductase; Provisional.
Length = 278
Score = 28.3 bits (64), Expect = 5.3
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 230 CCRGMDLDDIERTRNTILENYGSC 253
+D + +E+ R ILE++G C
Sbjct: 65 KADVLDKESLEQARQQILEDFGPC 88
>gnl|CDD|227586 COG5261, IQG1, Protein involved in regulation of cellular
morphogenesis/cytokinesis [Cell division and chromosome
partitioning / Signal transduction mechanisms].
Length = 1054
Score = 28.7 bits (64), Expect = 5.7
Identities = 15/107 (14%), Positives = 35/107 (32%), Gaps = 4/107 (3%)
Query: 150 HKDLKIVDNAIKVYMGTDPEEDSYSVFWDSKKLKRTSLAKQL--EAKKVTDVYVCGLAYD 207
LK + V S + + +++L + + + V+++Y +
Sbjct: 931 KSKLKGFSRGVGVVRDKPKSISSGTFKYSAQQLYKRGVLVNITIPEPNVSNIYFTFSSDS 990
Query: 208 VCVGASAIDAITIGYRTILIEDCCRGMDLDDIERTRNTILENYGSCV 254
I+ G+ L E DL + +N +++ G
Sbjct: 991 --TDNFVIEVYQPGHSVSLPEVSFCFDDLLKRQYNKNPVVDLGGFLT 1035
>gnl|CDD|177094 CHL00195, ycf46, Ycf46; Provisional.
Length = 489
Score = 28.4 bits (64), Expect = 6.2
Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 13/74 (17%)
Query: 47 DFVSG-TLNMSQRS-AKQNGLQVIEPINKLLDTVNFNAVFYSLDWHPSNHISFIDNI--- 101
DFV G T N + AK+N LQ +E I KL T A+F D++ F+++I
Sbjct: 48 DFVDGYTNNPNDNGFAKRNPLQALEFIEKL--TPETPALFLLKDFN-----RFLNDISIS 100
Query: 102 -KLRKIHYTSTVQP 114
KLR + QP
Sbjct: 101 RKLRNLSRILKTQP 114
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.136 0.413
Gapped
Lambda K H
0.267 0.0753 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 17,047,198
Number of extensions: 1608241
Number of successful extensions: 1273
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1260
Number of HSP's successfully gapped: 35
Length of query: 340
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 242
Effective length of database: 6,590,910
Effective search space: 1595000220
Effective search space used: 1595000220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.5 bits)