RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8942
(340 letters)
>3r2j_A Alpha/beta-hydrolase-like protein; nicotinamidase, cytoplasmic;
2.68A {Leishmania infantum}
Length = 227
Score = 201 bits (512), Expect = 9e-64
Identities = 58/230 (25%), Positives = 93/230 (40%), Gaps = 41/230 (17%)
Query: 32 IVRPKSALLVINVQNDFVS--GTLNMSQRSAKQNGLQVIEPINKLLDTVNFNAVFYSLDW 89
+ L++ ++Q DF++ G+L + G +++ IN + + F + DW
Sbjct: 30 VSSTTDVLIIADMQVDFLAPGGSL------HVKGGEALLDGINAVSSQLPFRYQVATQDW 83
Query: 90 HPSNHISFIDNIKLRKIHYTSTVQPEDAQTYDTVVFDGDTPMKQKLWPRHCVQDSWGAEL 149
HP NH SF+ + WP HCVQ S GA+L
Sbjct: 84 HPENHCSFVTH--------------------------------GGPWPPHCVQGSAGAQL 111
Query: 150 HKDLKIVDNAIKVYMGTDPEEDSYSVFWDSKKLKRTSLAKQLEAKKVTDVYVCGLAYDVC 209
H L + G + DSYS F + T LA L + V+VCG+AYD C
Sbjct: 112 HAGLHTQRINAVIRKGVTQQADSYSAFVEDNG-VSTGLAGLLHSIGARRVFVCGVAYDFC 170
Query: 210 VGASAIDAITIGYRTILIEDCCRGMDLDDIERTRNTILENYGSCVQSDEV 259
V +A+DA G+ +L+ED +D + + ++S +
Sbjct: 171 VFFTAMDARKNGFSVVLLEDLTAAVDDAAWSARTAELKDAGVVLLKSSAL 220
>2wt9_A Nicotinamidase; hydrolase, pyrazinamidase; HET: GOL; 1.65A
{Acinetobacter baumannii} PDB: 2wta_A*
Length = 235
Score = 200 bits (511), Expect = 2e-63
Identities = 78/237 (32%), Positives = 120/237 (50%), Gaps = 27/237 (11%)
Query: 26 NRWIKVIVRP-KSALLVINVQNDFVS-GTLNMSQRSAKQNGLQVIEPINKLLDTVNFNAV 83
+K+ +P SAL+V++VQN F G L A + +I IN+L F V
Sbjct: 19 QGHMKMNKQPQNSALVVVDVQNGFTPGGNL------AVADADTIIPTINQLAGC--FENV 70
Query: 84 FYSLDWHPSNHISFIDNIKLRKIHYTSTVQPEDAQTYDTVVFDGDTPMKQKLWPRHCVQD 143
+ DWHP NHISF N Q ++T+ D + Q LWP+HC+Q
Sbjct: 71 VLTQDWHPDNHISFAAN-------------HPGKQPFETIELDYGS---QVLWPKHCIQG 114
Query: 144 SWGAELHKDLKIVDNAIKVYMGTDPEEDSYSVFWDSKKLKRTSLAKQLEAKKVTDVYVCG 203
+ AE H DL I + + G DSYS F ++ T L L+ + + VYV G
Sbjct: 115 THDAEFHPDLNIPTAQLIIRKGFHAHIDSYSAFMEADHTTMTGLTGYLKERGIDTVYVVG 174
Query: 204 LAYDVCVGASAIDAITIGYRTILIEDCCRGMDLD-DIERTRNTILENYGSCVQSDEV 259
+A D CV +A+DA+ G++T++IED C+G+DL+ +E+ T+ + +QS ++
Sbjct: 175 IATDFCVAWTALDAVKQGFKTLVIEDACKGIDLNGSLEQAWQTMQQQGVVRIQSTDL 231
>3v8e_A Nicotinamidase; hydrolase; HET: JJJ; 2.71A {Saccharomyces
cerevisiae} PDB: 2h0r_A
Length = 216
Score = 187 bits (477), Expect = 9e-59
Identities = 67/223 (30%), Positives = 113/223 (50%), Gaps = 24/223 (10%)
Query: 38 ALLVINVQNDFVS--GTLNMSQRSAKQNGLQVIEPINKLLDTV--NFNAVFYSLDWHPSN 93
L+V+++QNDF+S G+L G ++I PI+ L+ +++ + + DWHPS
Sbjct: 3 TLIVVDMQNDFISPLGSL------TVPKGEELINPISDLMQDADRDWHRIVVTRDWHPSR 56
Query: 94 HISFIDNIKLRKIHYTSTVQPEDAQTYDTVVFDGDTPMKQKLWPRHCVQDSWGAELHKDL 153
HISF N K ++ P TY + D+ + LWP HCV+++WG++L +
Sbjct: 57 HISFAKNHKDKE--------PYSTYTYHSPRPGDDSTQEGILWPVHCVKNTWGSQLVDQI 108
Query: 154 K--IVDNAIKVYM-GTDPEEDSYSVFWDSKKLKRTSLAKQLEAKKVTDVYVCGLAYDVCV 210
+V IK+ G + + YS F D +T + K LE +VY+ G+A + V
Sbjct: 109 MDQVVTKHIKIVDKGFLTDREYYSAFHDIWNFHKTDMNKYLEKHHTDEVYIVGVALEYXV 168
Query: 211 GASAIDAITIGYRTILIEDCCRGMDLD--DIERTRNTILENYG 251
A+AI A +GY+T ++ D R + D I + + L+ +
Sbjct: 169 KATAISAAELGYKTTVLLDYTRPISDDPEVINKVKEE-LKAHN 210
>3gbc_A Pyrazinamidase/nicotinamidas PNCA; nicotinamidase - pyrazinamidase,
resistance to pyrazinamide, hydrolase; 2.20A
{Mycobacterium tuberculosis} PDB: 3pl1_A
Length = 186
Score = 177 bits (451), Expect = 4e-55
Identities = 54/221 (24%), Positives = 79/221 (35%), Gaps = 40/221 (18%)
Query: 38 ALLVINVQNDFVS-GTLNMSQRSAKQNGLQVIEPINKLLDT-VNFNAVFYSLDWHPSNHI 95
AL++++VQNDF G+L A G + I+ L +++ V + D+H
Sbjct: 3 ALIIVDVQNDFCEGGSL------AVTGGAALARAISDYLAEAADYHHVVATKDFHIDPGD 56
Query: 96 SFIDNIKLRKIHYTSTVQPEDAQTYDTVVFDGDTPMKQKLWPRHCVQDSWGAELHKDLKI 155
F TP WP HCV + GA+ H L
Sbjct: 57 HF-----------------------------SGTPDYSSSWPPHCVSGTPGADFHPSLDT 87
Query: 156 VDNAIKVYMGTDPEEDSYSVFWDSKKLKRTSLAKQLEAKKVTDVYVCGLAYDVCVGASAI 215
Y G +YS F + T L L + V +V V G+A D CV +A
Sbjct: 88 SAIEAVFYKGAYT--GAYSGFEGVDENG-TPLLNWLRQRGVDEVDVVGIATDHCVRQTAE 144
Query: 216 DAITIGYRTILIEDCCRGMDLDDIERTRNTILENYGSCVQS 256
DA+ G T ++ D G+ D + V S
Sbjct: 145 DAVRNGLATRVLVDLTAGVSADTTVAALEEMRTASVELVCS 185
>1im5_A 180AA long hypothetical pyrazinamidase/nicotinamidase;
pyrazinamide, tuberculosis, PZA resistance, drug
resistance, metal ION catalysis; 1.65A {Pyrococcus
horikoshii} SCOP: c.33.1.3 PDB: 1ilw_A
Length = 180
Score = 171 bits (436), Expect = 5e-53
Identities = 63/215 (29%), Positives = 100/215 (46%), Gaps = 49/215 (22%)
Query: 35 PKSALLVINVQNDFVS-GTLNMSQRSAKQNGLQVIEPINKLLDTV--NFNAVFYSLDWHP 91
P+ AL+V+++Q DF+ G L G ++I +N+ + + + DWHP
Sbjct: 2 PEEALIVVDMQRDFMPGGAL------PVPEGDKIIPKVNEYIRKFKEKGALIVATRDWHP 55
Query: 92 SNHISFIDNIKLRKIHYTSTVQPEDAQTYDTVVFDGDTPMKQKLWPRHCVQDSWGAELHK 151
NHISF + WPRHCVQ++ GAE
Sbjct: 56 ENHISFRER--------------------------------GGPWPRHCVQNTPGAEFVV 83
Query: 152 DLKIVDNAIKVYMGTDPEEDSYSVFWDSKKLKRTSLAKQLEAKKVTDVYVCGLAYDVCVG 211
DL ++A+ + T+P++++YS F T LAK L V VY+CG+A + CV
Sbjct: 84 DLP--EDAVIISKATEPDKEAYSGFEG------TDLAKILRGNGVKRVYICGVATEYCVR 135
Query: 212 ASAIDAITIGYRTILIEDCCRGMDLDDIERTRNTI 246
A+A+DA+ G+ L+ D +G+ +D ER +
Sbjct: 136 ATALDALKHGFEVYLLRDAVKGIKPEDEERALEEM 170
>3o94_A Nicotinamidase; hydrolase; 1.60A {Streptococcus pneumoniae} PDB:
3o90_A 3o91_A* 3o92_A* 3o93_A*
Length = 211
Score = 157 bits (399), Expect = 5e-47
Identities = 45/234 (19%), Positives = 85/234 (36%), Gaps = 49/234 (20%)
Query: 36 KSALLVINVQNDFVS--GTLNMSQRSAKQNGLQVIEPINKLLDTV--NFNAVFYSLDWHP 91
AL+ I+ DFV+ G L +A + + I+K+ + +F+++D H
Sbjct: 22 TKALISIDYTEDFVADSGKL-----TAGAPAQAISDAISKVTRLAFERGDYIFFTIDAHE 76
Query: 92 SNHISFIDNIKLRKIHYTSTVQPEDAQTYDTVVFDGDTPMKQKLWPRHCVQDSWGAELHK 151
N PE KL+P H + + G L+
Sbjct: 77 ENDCFH----------------PE-----------------SKLFPPHNLIGTSGRNLYG 103
Query: 152 DLKIVDNAIKVYMG-TDPEEDSYSVFWDSKKLKRTSLAKQLEAKKVTDVYVCGLAYDVCV 210
DL I ++ YS F T L +L ++V+ V + G+ D+ V
Sbjct: 104 DLGIFYQEHGSDSRVFWMDKRHYSAFSG------TDLDIRLRERRVSTVILTGVLTDISV 157
Query: 211 GASAIDAITIGYRTILIEDCCRGMDLDDIERTRNTILENYGSCVQSDEVKSMVE 264
+AIDA +GY +++ + ++ + G+ + + + + E
Sbjct: 158 LHTAIDAYNLGYDIEIVKPAVASIWPENHQFALGHFKNTLGAKLVDENLNELFE 211
>3eef_A N-carbamoylsarcosine amidase related protein; structural genomics,
protein structure initiative, midwest center for
structural genomics; 2.35A {Thermoplasma acidophilum}
Length = 182
Score = 131 bits (333), Expect = 1e-37
Identities = 51/234 (21%), Positives = 94/234 (40%), Gaps = 64/234 (27%)
Query: 36 KSALLVINVQNDFVSGTLNMSQRSAKQNGLQVIEPINKLLDTVNFNA----VFYSLDWHP 91
K AL+V+++ N+F+ G L A ++ + P K+++T F V Y D H
Sbjct: 2 KPALVVVDMVNEFIHGRL------ATPEAMKTVGPARKVIET--FRRSGLPVVYVNDSHY 53
Query: 92 SNHISFIDNIKLRKIHYTSTVQPEDAQTYDTVVFDGDTPMKQKLWPRHCVQDSWGAELHK 151
+ ++W RH ++ G+E+
Sbjct: 54 PDDPEI------------------------------------RIWGRHSMKGDDGSEVID 77
Query: 152 DLKIVDNAIKVYMGTDPEEDSYSVFWDSKKLKRTSLAKQLEAKKVTDVYVCGLAYDVCVG 211
+++ + E+ +YS F+ T+L L A + V + GL D+CV
Sbjct: 78 EIRPSAGDYVL------EKHAYSGFYG------TNLDMILRANGIDTVVLIGLDADICVR 125
Query: 212 ASAIDAITIGYRTILIEDCCRGMDLDDIERTRNTILENYGSCVQ-SDEVKSMVE 264
+A DA+ YR I++ED + + + YG+ V+ SDE++ M++
Sbjct: 126 HTAADALYRNYRIIVVEDAVAARIDPNWK---DYFTRVYGATVKRSDEIEGMLQ 176
>3hb7_A Isochorismatase hydrolase; PS structural genomics, midwest center
for structural genomics structure initiative; 2.30A
{Alkaliphilus metalliredigens}
Length = 204
Score = 131 bits (331), Expect = 4e-37
Identities = 44/231 (19%), Positives = 81/231 (35%), Gaps = 62/231 (26%)
Query: 36 KSALLVINVQNDFVS--GTLNMSQRSAKQNGLQVIEPINKLLDTVNFNA-----VFYSLD 88
K A+LVI++ NDFV L G +I + K+ + V + + +
Sbjct: 7 KHAILVIDMLNDFVGEKAPL------RCPGGETIIPDLQKIFEWVRGREGDDIHLVHIQE 60
Query: 89 WHPSNHISFIDNIKLRKIHYTSTVQPEDAQTYDTVVFDGDTPMKQKLWPRHCVQDSWGAE 148
H N F ++ P H V+ +WG++
Sbjct: 61 AHRKNDADF------------------------------------RVRPLHAVKGTWGSD 84
Query: 149 LHKDLKIVDNAIKVYMGTDPEEDSYSVFWDSKKLKRTSLAKQLEAKKVTDVYVCGLAYDV 208
+L ++ V ++ +S F T L L+ + + V + G+ +V
Sbjct: 85 FIPELYPQEDEYIV------QKRRHSGFAH------TDLDLYLKEEGIDTVVLTGVWTNV 132
Query: 209 CVGASAIDAITIGYRTILIEDCCRGMDLDDIERTRNTILENYGSCVQSDEV 259
CV ++A DA+ Y+ I + D + E N L + + D+
Sbjct: 133 CVRSTATDALANAYKVITLSDGTASKTEEMHEYGLN-DLSIFTKVMTVDQY 182
>3hu5_A Isochorismatase family protein; structural genomics, protein
structure INI NEW YORK structural genomix research
consortium, nysgxrc; 1.50A {Desulfovibrio vulgaris}
Length = 204
Score = 126 bits (318), Expect = 4e-35
Identities = 43/243 (17%), Positives = 74/243 (30%), Gaps = 57/243 (23%)
Query: 36 KSALLVINVQNDFVS--GTLNMSQRSAKQNGLQVIEPINKLLDTVNFNA----VFYSLDW 89
AL +I++QNDFV + + + I LL A V + +
Sbjct: 8 TVALAIIDMQNDFVLPGAPA------CVEGAMGTVPVIAGLLAK--ARAEGWMVLHVVRA 59
Query: 90 HPSNHISFIDNIKLRKIHYTSTVQPEDAQTYDTVVFDGDTPMKQKLWPRHCVQDSWGAEL 149
H ++ + + CV + GAE+
Sbjct: 60 HRADGSDAEKSREHLF----------------------------LEGGGLCVAGTPGAEI 91
Query: 150 HKDLKIVDNAIKVYMGTDPEEDSYSVFWDSKKLKRTSLAKQLEAKKVTDVYVCGLAYDVC 209
L+ + + +S F T L + V + V G Y C
Sbjct: 92 VAGLEPASGETVL------VKTRFSAFMG------TECDMLLRRRGVDTLLVSGTQYPNC 139
Query: 210 VGASAIDAITIGYRTILIEDCCRGMDLDDIERTRNTILENYGSCV---QSDEVKSMVEGK 266
+ +A+DA + Y +++ D C E N + +CV D+V + EG
Sbjct: 140 IRGTAVDAFALDYDVVVVTDACSARTPGVAESNINDMRAMGITCVPLTALDDVLARREGH 199
Query: 267 DRR 269
Sbjct: 200 HHH 202
>2fq1_A Isochorismatase; ENTB, NRPS, multi-domain, ACP, hydrolase; 2.30A
{Escherichia coli}
Length = 287
Score = 113 bits (285), Expect = 1e-29
Identities = 36/248 (14%), Positives = 72/248 (29%), Gaps = 55/248 (22%)
Query: 36 KSALLVINVQNDFVSGTLNMSQRSAKQNGLQVIEPINKLLDTVNFNA----VFYSLDWHP 91
++ALL+ ++Q+ FVS QVI I L D V+Y+
Sbjct: 32 RAALLIHDMQDYFVSFWGENCPMME-----QVIANIAALRDY--CKQHNIPVYYTAQPKE 84
Query: 92 SNHISFIDNIKLRKIHYTSTVQPEDAQTYDTVVFDGDTPMKQKLWPRHCVQDSWGAELHK 151
+ D D + +W + ++
Sbjct: 85 QS--------------------------------DEDRALLNDMWGPGLTRSPEQQKVVD 112
Query: 152 DLKIVDNAIKVYMGTDPEEDSYSVFWDSKKLKRTSLAKQLEAKKVTDVYVCGLAYDVCVG 211
L + + + YS F R+ L + L+ + + G+ +
Sbjct: 113 RLTPDADDTVL------VKWRYSAFH------RSPLEQMLKESGRNQLIITGVYAHIGCM 160
Query: 212 ASAIDAITIGYRTILIEDCCRGMDLDDIERTRNTILENYGSCVQSDEVKSMVEGKDRRPE 271
+A DA + ++ D D+ + + G V ++E+ +
Sbjct: 161 TTATDAFMRDIKPFMVADALADFSRDEHLMSLKYVAGRSGRVVMTEELLPAPIPASKAAL 220
Query: 272 LGLKLALE 279
+ L L
Sbjct: 221 REVILPLL 228
>3txy_A Isochorismatase family protein family; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid; 1.70A {Burkholderia thailandensis}
Length = 199
Score = 105 bits (263), Expect = 3e-27
Identities = 42/239 (17%), Positives = 79/239 (33%), Gaps = 55/239 (23%)
Query: 35 PKSALLVINVQNDFVSGTLNMSQRSAKQNGLQVIEPINKLLDTVNFNA----VFYSLDWH 90
P AL+ I++QN V + Q+G V+ +L + F A V + +
Sbjct: 12 PTVALVAIDLQNGIVVLPM------VPQSGGDVVAKTAELANA--FRARKLPVIFVHTSY 63
Query: 91 PSNHISFIDNIKLRKIHYTSTVQPEDAQTYDTVVFDGDTPMKQKLWPRHCVQDSWGAELH 150
QP+ A +K + P D +
Sbjct: 64 ----------------------QPDGA---------VALKVKTDVPPSPPNLDPEWSAFA 92
Query: 151 KDLKIVDNAIKVYMGTDPEEDSYSVFWDSKKLKRTSLAKQLEAKKVTDVYVCGLAYDVCV 210
L + + V + + F T L QL + +TD+ + G+A ++ V
Sbjct: 93 PALGVQPLDVVV------TKHQWGAFT------GTDLDVQLRRRGITDIVLTGIATNIGV 140
Query: 211 GASAIDAITIGYRTILIEDCCRGMDLDDIERTRNTILENYGSCVQSDEVKSMVEGKDRR 269
++A +A Y +++ D D I G + +V++ +E + R
Sbjct: 141 ESTAREAYENNYNVVVVSDAVSTWSTDAQTFALTQIFPKLGQVATAADVEAALETQQTR 199
>3kl2_A Putative isochorismatase; structural genomics, unknown function,
PSI-2, protein struct initiative; 2.30A {Streptomyces
avermitilis}
Length = 226
Score = 105 bits (264), Expect = 4e-27
Identities = 34/238 (14%), Positives = 77/238 (32%), Gaps = 44/238 (18%)
Query: 36 KSALLVINVQNDFVSGTLNMSQRSAKQNGLQ-VIEPINKLLDTVNFNA----VFYSLDWH 90
++A+++I QN+F S + A ++ ++D + ++
Sbjct: 25 RTAIVLIEYQNEFTSDGGVLHGAVADVMQHTGMLANTVAVVDA--ARQAGVPIMHAPITF 82
Query: 91 PSNHISFIDNIKLRKIHYTSTVQPEDAQTYDTVVFDGDTPMKQKLWPRHCVQDSWGAELH 150
+ + +K + + V+ +WGA +
Sbjct: 83 AEGYGELTRHPYGI--------------------------LKGVVDGKAFVKGTWGAAIV 116
Query: 151 KDLKIVDNAIKVYMGTDPEEDSYSVFWDSKKLKRTSLAKQLEAKKVTDVYVCGLAYDVCV 210
+L V+ I + + F T+L L +K V + + G + CV
Sbjct: 117 DELAPVNGDIVI-----EGKRGLDTFAS------TNLDFILRSKGVDTIVLGGFLTNCCV 165
Query: 211 GASAIDAITIGYRTILIEDCCRGMDLDDIERTRNTILENYGSCVQSDEVKSMVEGKDR 268
++ G+R I + DC ++ + + + S +V + +EG
Sbjct: 166 ESTMRTGYERGFRVITLTDCVAATSQEEHNNAISYDFPMFSVPMTSADVIAALEGHHH 223
>1nf9_A Phenazine biosynthesis protein PHZD; isochorismatase, enzyme,
phenazine pathway, hydrolase; HET: BOG; 1.50A
{Pseudomonas aeruginosa} SCOP: c.33.1.3 PDB: 1nf8_A*
3r77_A*
Length = 207
Score = 103 bits (258), Expect = 2e-26
Identities = 28/228 (12%), Positives = 61/228 (26%), Gaps = 57/228 (25%)
Query: 36 KSALLVINVQNDFVSGTLNMSQRSAKQNGLQVIEPINKLLDTVNFNA----VFYSLDWHP 91
++ LLV ++Q F+ + ++ +L + Y+
Sbjct: 31 RAVLLVHDMQRYFLRPL-------PESLRAGLVANAARLRRW--CVEQGVQIAYTAQPGS 81
Query: 92 SNHISFIDNIKLRKIHYTSTVQPEDAQTYDTVVFDGDTPMKQKLWPRHCVQDSWGAELHK 151
+ + + W E+ +
Sbjct: 82 MT--------------------------------EEQRGLLKDFWGPGMRASPADREVVE 109
Query: 152 DLKIVDNAIKVYMGTDPEEDSYSVFWDSKKLKRTSLAKQLEAKKVTDVYVCGLAYDVCVG 211
+L + + + YS F+ + L +++ A + +CG+ V V
Sbjct: 110 ELAPGPDDWLL------TKWRYSAFF------HSDLLQRMRAAGRDQLVLCGVYAHVGVL 157
Query: 212 ASAIDAITIGYRTILIEDCCRGMDLDDIERTRNTILENYGSCVQSDEV 259
S +DA + + L+ D V +DEV
Sbjct: 158 ISTVDAYSNDIQPFLVADAIADFSEAHHRMALEYAASRCAMVVTTDEV 205
>1nba_A N-carbamoylsarcosine amidohydrolase; hydrolase(IN linear amides);
2.00A {Arthrobacter SP} SCOP: c.33.1.3
Length = 264
Score = 100 bits (252), Expect = 5e-25
Identities = 36/240 (15%), Positives = 81/240 (33%), Gaps = 48/240 (20%)
Query: 36 KSALLVINVQNDFVSGTLNMSQRSAKQNGLQVIEPINKLLDTVNFNA----VFYSLDWHP 91
+ A++ I++ N + S + +I + ++ + A VFY+ + +
Sbjct: 44 RPAVIHIDLANAWTQPGHPFSCPGMET----IIPNVQRINEA--ARAKGVPVFYTTNVYR 97
Query: 92 SNHISFIDNIKLRKIHYTSTVQPEDAQTYDTVVFDGDTPMKQKLWPRHCVQDSWGAELHK 151
+ + T D ++ K+ DS+ A++
Sbjct: 98 NRDA--------------------SSGTNDMGLWYS------KIPTETLPADSYWAQIDD 131
Query: 152 DLKIVDNAIKVYMGTDPEEDSYSVFWDSKKLKRTSLAKQLEAKKVTDVYVCGLAYDVCVG 211
+ D + + E++ S F T+L L + ++ + V G CV
Sbjct: 132 RIAPADGEVVI------EKNRASAFP------GTNLELFLTSNRIDTLIVTGATAAGCVR 179
Query: 212 ASAIDAITIGYRTILIEDCCRGMDLDDIERTRNTILENYGSCVQSDEVKSMVEGKDRRPE 271
+ DAI G+R I+ + ++ I +G +D V ++ + +
Sbjct: 180 HTVEDAIAKGFRPIIPRETIGDRVPGVVQWNLYDIDNKFGDVESTDSVVQYLDALPQFED 239
>3ot4_A Putative isochorismatase; NICF, maleamate hydrolase, hydrol; 2.40A
{Bordetella bronchiseptica} PDB: 3uao_A
Length = 236
Score = 98.5 bits (246), Expect = 2e-24
Identities = 42/240 (17%), Positives = 74/240 (30%), Gaps = 53/240 (22%)
Query: 36 KSALLVINVQNDFVSGTLNMSQRSAKQNGLQVIEPINKLLDTVNFNA----VFYSLDWHP 91
LL+++ N F + N IE +L V +S +
Sbjct: 44 PYGLLIVDFVNGFADP-----AQFGGGNIAAAIETTRTVLAA--ARERGWAVAHSRIVYA 96
Query: 92 SNHISFIDNIKLRKIHYTSTVQPEDAQTYDTVVFDGDTPMKQKLWPRHCVQDSWGAELHK 151
+DA D +F P + + + +
Sbjct: 97 ----------------------DDDA---DGNIFSIKVPG-----MLTLKEHAPASAIVP 126
Query: 152 DLKIVDNAIKVYMGTDPEEDSYSVFWDSKKLKRTSLAKQLEAKKVTDVYVCGLAYDVCVG 211
L V + + S F+ T LA L + V + V G CV
Sbjct: 127 QLAPQAGEYVV------RKSTPSAFYG------TMLAAWLAQRGVQTLLVAGATTSGCVR 174
Query: 212 ASAIDAITIGYRTILIEDCCRGMDLDDIERTRNTILENYGSCVQSDEVKSMVEGKDRRPE 271
AS +DA++ G+R +++ DC L E + + Y + + DE + +G +
Sbjct: 175 ASVVDAMSAGFRPLVLSDCVGDRALGPHEANLFDMRQKYAAVMTHDEALAKTKGLEHHHH 234
>3irv_A Cysteine hydrolase; structural genomics, PSI-2, protein structure
initiative, CY hydrolase; 1.60A {Pseudomonas syringae
PV}
Length = 233
Score = 94.0 bits (234), Expect = 8e-23
Identities = 47/248 (18%), Positives = 81/248 (32%), Gaps = 68/248 (27%)
Query: 36 KSALLVINVQNDFVSGTLNMSQRSAKQNGLQVIEPINKLLDTVNFNA----VFYSLDWHP 91
++A++V+++Q F T + +S +++PI KLL A V Y
Sbjct: 22 RTAVIVVDMQKVFCEPTGALYVKSTAD----IVQPIQKLLQA--ARAAQVMVIYLRHIVR 75
Query: 92 SNHISFIDNIKLRKIHYTSTVQPEDAQTYDTVVFDGDTPMKQKLWP---RHCVQDSWGAE 148
+ DT + L+P + + E
Sbjct: 76 GD--------------------------------GSDTGRMRDLYPNVDQILARHDPDVE 103
Query: 149 LHKDLKIVDNAIKVYMGTDPEEDSYSVFWDSKKLKRTSLAKQLEAKKVTDVYVCGLAYDV 208
+ + L + + V ++ YS F T L L A+ V + VCG +V
Sbjct: 104 VIEALAPQSDDVIV------DKLFYSGFH------NTDLDTVLRARDVDTIIVCGTVTNV 151
Query: 209 CVGASAIDAITIGYRTILIEDCCRGMDLDDIERTR-----------NTILENYGSCVQSD 257
C + D + Y+ I + D MD D+ TI +G +
Sbjct: 152 CCETTIRDGVHREYKVIALSDANAAMDYPDVGFGAVSAADVQRISLTTIAYEFGEVTTTA 211
Query: 258 EVKSMVEG 265
EV +E
Sbjct: 212 EVIRRIES 219
>3oqp_A Putative isochorismatase; catalytic triad, structural genomics,
joint center for struc genomics, JCSG, protein structure
initiative; 1.22A {Burkholderia xenovorans}
Length = 211
Score = 92.4 bits (230), Expect = 2e-22
Identities = 44/254 (17%), Positives = 82/254 (32%), Gaps = 75/254 (29%)
Query: 35 PKSALLVINVQNDFVSGTLNMSQRSAKQNGLQVIEPINKLLDTVNFNA----VFYSLDWH 90
P+ AL+VI+VQN++V+G L + + + I + +D A V ++
Sbjct: 5 PRRALIVIDVQNEYVTGDLPIEYP----DVQSSLANIARAMDA--ARAAGVPVVIVQNFA 58
Query: 91 PSNHISFIDNIKLRKIHYTSTVQPEDAQTYDTVVFDGDTPMKQKLWPRHCVQDSWGAELH 150
P+ + S GAELH
Sbjct: 59 PAGS-------------------------------------------PLFARGSNGAELH 75
Query: 151 KDLKIVDNAIKVYMGTDPEEDSYSVFWDSKKLKRTSLAKQLEAKKVTDVYVCGLAYDVCV 210
+ V E+ S F T LA L A+++ + V G C
Sbjct: 76 PVVSERARDHYV------EKSLPSAFTG------TDLAGWLAARQIDTLTVTGYMTHNCD 123
Query: 211 GASAIDAITIGYRTILIEDCCRGMDL---------DDIERTRNTILEN-YGSCVQSDEVK 260
++ A+ G + D + ++I R + +L++ + + +DE
Sbjct: 124 ASTINHAVHSGLAVEFLHDATGSVPYENSAGFASAEEIHRVFSVVLQSRFAAVASTDEWI 183
Query: 261 SMVEGKDRRPELGL 274
+ V+G +
Sbjct: 184 AAVQGGTPLARGNI 197
>1j2r_A Hypothetical isochorismatase family protein YECD; parallel
beta-sheet 3-2-1-4-5-6, alpha-beta-alpha motif, TET
structural genomics; 1.30A {Escherichia coli} SCOP:
c.33.1.3
Length = 199
Score = 86.5 bits (215), Expect = 2e-20
Identities = 33/228 (14%), Positives = 69/228 (30%), Gaps = 55/228 (24%)
Query: 36 KSALLVINVQNDFVSGTLNMSQRSAKQNGLQVIEPINKLLDTVNFNA----VFYSLDWHP 91
+AL+VI++Q + +V+ KL F A VF
Sbjct: 19 TTALVVIDLQEGILPFAGGPH------TADEVVNRAGKLAAK--FRASGQPVFLVRVGWS 70
Query: 92 SNHISFIDNIKLRKIHYTSTVQPEDAQTYDTVVFDGDTPMKQKLWPRHCVQDSWGAELHK 151
+++ V +
Sbjct: 71 ADYAEA-------------------------------LKQPVDAPSPAKVLPENWWQHPA 99
Query: 152 DLKIVDNAIKVYMGTDPEEDSYSVFWDSKKLKRTSLAKQLEAKKVTDVYVCGLAYDVCVG 211
L D+ I++ + + F+ T L QL + + + +CG++ ++ V
Sbjct: 100 ALGTTDSDIEI------IKRQWGAFY------GTDLELQLRRRGIDTIVLCGISTNIGVE 147
Query: 212 ASAIDAITIGYRTILIEDCCRGMDLDDIERTRNTILENYGSCVQSDEV 259
++A +A +G+ ++ ED C + + N I +E+
Sbjct: 148 STARNAWELGFNLVIAEDACSAASAEQHNNSINHIYPRIARVRSVEEI 195
>3lqy_A Putative isochorismatase hydrolase; structural genomics, PSI-2,
protein structure initiative, midwest center for
structural genomics, MCSG; 1.75A {Oleispira antarctica}
Length = 190
Score = 78.9 bits (195), Expect = 1e-17
Identities = 40/240 (16%), Positives = 70/240 (29%), Gaps = 72/240 (30%)
Query: 34 RPKSALLVINVQNDFVSGTLNMSQRSAKQNGLQVIEPINKLLDTVNFNA----VFYSLDW 89
+ALL+I+ QND+ S ++ E KLL F V +
Sbjct: 5 ENTTALLLIDFQNDYFSTYNGA--KNPLVGTEAAAEQGAKLLAK--FRQQGLPVVHVRHE 60
Query: 90 HPSNHISFIDNIKLRKIHYTSTVQPEDAQTYDTVVFDGDTPMKQKLWPRHCVQDSWGAEL 149
P + P + S GA++
Sbjct: 61 FP----------------------------------TDEAPF--------FLPGSDGAKI 78
Query: 150 HKDLKIVDNAIKVYMGTDPEEDSYSVFWDSKKLKRTSLAKQLEAKKVTDVYVCGLAYDVC 209
H + + V + + F D T L K L+ + + + G +
Sbjct: 79 HPSVAAQEGEAVV------LKHQINSFRD------TDLKKVLDDAGIKKLVIVGAMTHMA 126
Query: 210 VGASAIDAITIGYRTILIEDCCRGMDLD---------DIERTRNTILE-NYGSCVQSDEV 259
+ A A +GY + D C +DL+ + + L Y + +DE+
Sbjct: 127 IDAVTRAAEDLGYECAVAHDACATLDLEFNGITVPAAQVHAAFMSALSFAYANVASADEL 186
>2a67_A Isochorismatase family protein; structural genomics, PSI, protein
structure initiative, MIDW center for structural
genomics, MCSG; 2.00A {Enterococcus faecalis}
Length = 167
Score = 69.2 bits (170), Expect = 2e-14
Identities = 28/219 (12%), Positives = 58/219 (26%), Gaps = 68/219 (31%)
Query: 36 KSALLVINVQNDFVSGTLNMSQRSAKQNGLQVIEPINKLLDTVNFNAVFYSLDWHPSNHI 95
ALL+I+ Q S T V++ +N+ + + +
Sbjct: 4 NRALLLIDFQKGIESPTQ------QLYRLPAVLDKVNQRIAV-----------YRQHH-- 44
Query: 96 SFIDNIKLRKIHYTSTVQPEDAQTYDTVVFDGDTPMKQKLWPRHCVQDSWGAELHKDLKI 155
I VQ E+ + + +L + L
Sbjct: 45 -------APIIF----VQHEETE------LPFGSD---------------SWQLFEKLDT 72
Query: 156 VDNAIKVYMGTDPEEDSYSVFWDSKKLKRTSLAKQLEAKKVTDVYVCGLAYDVCVGASAI 215
+ + + F+ T+L L + V + + G+ + CV +
Sbjct: 73 QPTDFFI------RKTHANAFYQ------TNLNDLLTEQAVQTLEIAGVQTEFCVDTTIR 120
Query: 216 DAITIGYRTILIEDCC-----RGMDLDDIERTRNTILEN 249
A +GY ++ + I + I
Sbjct: 121 MAHGLGYTCLMTPKTTSTLDNGHLTAAQIIQHHEAIWAG 159
>3mcw_A Putative hydrolase; isochorismatase family, structural genomics,
joint center FO structural genomics, JCSG; HET: MSE;
1.06A {Chromobacterium violaceum}
Length = 198
Score = 69.3 bits (170), Expect = 3e-14
Identities = 33/237 (13%), Positives = 64/237 (27%), Gaps = 70/237 (29%)
Query: 34 RPKSALLVINVQNDFVSGTLNMSQRSAKQNGLQVIEPINKLLDTVNFNAVFYSLDWHPSN 93
K LL+I++Q + +N Q + LL + +
Sbjct: 10 SDKPLLLLIDMQQAVDDPSW------GPRNHPQAEQACAGLL------QAWRARGLPL-- 55
Query: 94 HISFIDNIKLRKIHYTSTVQPEDAQTYDTVVFDGDTPMKQKLWPRHCVQDSWGAELHKDL 153
IH ++ + + ++ P G ++
Sbjct: 56 ------------IH----IRHDSV--------EPNST----YRP-----GQPGHAFKPEV 82
Query: 154 KIVDNAIKVYMGTDPEEDSYSVFWDSKKLKRTSLAKQLEAKKVTDVYVCGLAYDVCVGAS 213
+ + + + S F T L L A ++ V G++ V A+
Sbjct: 83 EPRPGETVI------AKQTNSAFIG------TGLEALLRANGWLELVVAGVSTSNSVEAT 130
Query: 214 AIDAITIGYRTILIEDCCRGMDLDD-----------IERTRNTILENYGSCVQSDEV 259
A +G+ L ED C D D + + Y S ++
Sbjct: 131 VRMAGNLGFAVCLAEDGCFTFDKTDWHGRRRSADEVHAMSLANLDGEYCRVCGSADI 187
>1yac_A Ycacgp, YCAC gene product; unknown bacterial hydrolase, three layer
alpha-beta-alpha SA topology, ENTB homolog, cshase
homolog; 1.80A {Escherichia coli} SCOP: c.33.1.3
Length = 208
Score = 49.7 bits (119), Expect = 2e-07
Identities = 11/56 (19%), Positives = 22/56 (39%)
Query: 185 TSLAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGMDLDDIE 240
K ++A + + G+ +VCV A+ AI G+ ++ D +
Sbjct: 94 EDFVKAVKATGKKQLIIAGVVTEVCVAFPALSAIEEGFDVFVVTDASGTFNEITRH 149
Score = 27.0 bits (60), Expect = 8.5
Identities = 7/38 (18%), Positives = 19/38 (50%)
Query: 32 IVRPKSALLVINVQNDFVSGTLNMSQRSAKQNGLQVIE 69
+ + +A+L+++ Q +S ++ K N L + +
Sbjct: 8 LDKNDAAVLLVDHQAGLLSLVRDIEPDKFKNNVLALGD 45
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 45.6 bits (107), Expect = 2e-05
Identities = 50/342 (14%), Positives = 95/342 (27%), Gaps = 90/342 (26%)
Query: 28 WIKVIVRPKSALLVINVQNDFVSGTLNMSQR-----SAKQNGLQVIEPINKLLDTVNFNA 82
W+ + ++ +Q N + R + K + + +LL + +
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245
Query: 83 VFYSLD--WHPSNHI-SFIDNIKLRKIHYTSTVQPEDAQTYDTVVFDGDTPMKQKLWPRH 139
L + +F N+ KI T T V D +
Sbjct: 246 CLLVLLNVQNA-KAWNAF--NLSC-KILLT---------TRFKQVTDFLSAATTT--HIS 290
Query: 140 CVQDSWGAELHKDLKIVDNAIKVYMGTDPEEDS------YSVF----------WD----- 178
S + ++ + P E S+ WD
Sbjct: 291 LDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV 350
Query: 179 -SKKLKRT---SLAKQLEAKKVTDVYVCGLA---YDVCVGASAIDAITIGYRTILIEDCC 231
KL SL LE + ++ L+ I +++ D
Sbjct: 351 NCDKLTTIIESSL-NVLEPAEYRKMFD-RLSVFPPSA--------HIPTILLSLIWFD-- 398
Query: 232 RGMDLDDIERTRNTILENYGSCVQSDEVKSMVEGKDRRPELGL-KLALELKAKC--IGSL 288
+ D+ V S+VE + + + + + LELK K +L
Sbjct: 399 --VIKSDVMVV-----------VNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL 445
Query: 289 YVRVIESNNST---SQNIITLLRIPTYLDSRYTIVWYGTIVY 327
+ +++ N + + P YLD Y +Y I +
Sbjct: 446 HRSIVDHYNIPKTFDSDDLI----PPYLDQ-Y---FYSHIGH 479
Score = 37.5 bits (86), Expect = 0.007
Identities = 40/288 (13%), Positives = 86/288 (29%), Gaps = 70/288 (24%)
Query: 107 HYTSTVQPEDAQTYDTVVFDGDTPMKQKLWPRHCVQDSWGAELHKDLKIVDNAIKVYMGT 166
H+ E Y ++ + + VQD + L K + +D+ I
Sbjct: 5 HHMDFETGEHQYQYKDILSVFEDAFVDNFDCKD-VQDMPKSILSK--EEIDHIIMS---K 58
Query: 167 DPEEDSYSVFWDSKKLKRTSLAKQLEAKKVTDVY---VCGLAYDVCVGASAIDAITIGYR 223
D + +FW + K+ + ++ + + Y + + + S + + I R
Sbjct: 59 DAVSGTLRLFW-TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTE-QRQPSMMTRMYIEQR 116
Query: 224 TILIED--------CCRGMDLDDIERTRNTILEN--------YG------SC-----VQS 256
L D R L + R +LE G + S
Sbjct: 117 DRLYNDNQVFAKYNVSR---LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLS 173
Query: 257 DEVKSMVE--------GKDRRPELGLKLALELKAKCIGSLYVR------VIESNNSTSQN 302
+V+ ++ PE L++ +L + + R + +S
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233
Query: 303 IITLLRIPTY------LDSRYTIVWYGTIVYTY-----VIIGTKHSSI 339
+ LL+ Y L + V + +++ T+ +
Sbjct: 234 LRRLLKSKPYENCLLVLLN----VQNAKAWNAFNLSCKILLTTRFKQV 277
>1yzv_A Hypothetical protein; structural genomics, PSI, protein structure
initiative, STRU genomics of pathogenic protozoa
consortium, SGPP; 2.00A {Trypanosoma cruzi}
Length = 204
Score = 43.4 bits (102), Expect = 3e-05
Identities = 8/46 (17%), Positives = 20/46 (43%)
Query: 186 SLAKQLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCC 231
+ ++ +V V + G VC+ +A + + + ++ D C
Sbjct: 100 QVMPLVDLPEVEQVVLWGFETHVCILQTAAALLDMKKKVVIAVDGC 145
>2b34_A F35G2.2, MAR1 ribonuclease; isochorismatase family, structural
genomics, PSI, protein structure initiative; 2.14A
{Caenorhabditis elegans}
Length = 199
Score = 39.0 bits (91), Expect = 7e-04
Identities = 12/51 (23%), Positives = 20/51 (39%)
Query: 190 QLEAKKVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGMDLDDIE 240
+ KKV +V + G+ VCV + D + G ++ D D
Sbjct: 95 EDTLKKVQNVILVGIEAHVCVLQTTYDLLERGLNVHVVVDAVSSRSHTDRH 145
>1x9g_A Putative MAR1; structural genomics, protein structure initiative,
SGPP, PSI structural genomics of pathogenic protozoa
consortium; 2.41A {Leishmania donovani} SCOP: c.33.1.3
PDB: 1xn4_A
Length = 200
Score = 36.8 bits (85), Expect = 0.004
Identities = 9/46 (19%), Positives = 17/46 (36%)
Query: 195 KVTDVYVCGLAYDVCVGASAIDAITIGYRTILIEDCCRGMDLDDIE 240
V + V G+ C+ + D + + R L +D D +
Sbjct: 106 DVDNAVVFGIEGHACILQTVADLLDMNKRVFLPKDGLGSQKKTDFK 151
Score = 30.3 bits (68), Expect = 0.72
Identities = 9/51 (17%), Positives = 19/51 (37%), Gaps = 9/51 (17%)
Query: 26 NRWIKVIVRPKSALLVINVQNDFVSGTLNMSQRSAKQNGLQVIEPINKLLD 76
+R + + K+A L +++Q F +N + N+L
Sbjct: 10 SRLMPHYSKGKTAFLCVDLQEAFSKRI---------ENFANCVFVANRLAR 51
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.5 bits (70), Expect = 0.21
Identities = 6/31 (19%), Positives = 12/31 (38%), Gaps = 7/31 (22%)
Query: 255 QSDEVKSMVEGK------DRRPELGLKLALE 279
+ +K + + D P L +K +E
Sbjct: 18 EKQALKKL-QASLKLYADDSAPALAIKATME 47
Score = 29.1 bits (64), Expect = 1.4
Identities = 6/22 (27%), Positives = 11/22 (50%), Gaps = 5/22 (22%)
Query: 151 KDLKIVDNAIKVYMGTDPEEDS 172
+ LK + ++K+Y DS
Sbjct: 20 QALKKLQASLKLYA---D--DS 36
>2ccm_A Calexcitin; EF hand, calcium, signaling protein; 1.8A {Loligo
pealeii}
Length = 191
Score = 29.8 bits (67), Expect = 0.78
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 5 NTLFDWNQDGLIDREEFAFCWNRWIKV 31
NT +D N DG+I+ ++F + +
Sbjct: 19 NTFYDCNHDGVIEWDDFELAIKKICNL 45
Score = 28.7 bits (64), Expect = 2.4
Identities = 8/30 (26%), Positives = 16/30 (53%)
Query: 8 FDWNQDGLIDREEFAFCWNRWIKVIVRPKS 37
D N+D + +EE+ W +K + + +S
Sbjct: 73 ADENEDEQVTKEEWLKMWAECVKSVEKGES 102
Score = 27.1 bits (60), Expect = 7.0
Identities = 5/18 (27%), Positives = 7/18 (38%)
Query: 8 FDWNQDGLIDREEFAFCW 25
++ RE FA W
Sbjct: 152 LSDGGKTMVTREIFARLW 169
Score = 27.1 bits (60), Expect = 7.1
Identities = 5/16 (31%), Positives = 11/16 (68%)
Query: 7 LFDWNQDGLIDREEFA 22
+ D + D +ID+ E++
Sbjct: 117 VNDTSGDNIIDKHEYS 132
>3akb_A Putative calcium binding protein; EF-hand, metal binding protein;
1.50A {Streptomyces coelicolor} PDB: 3aka_A
Length = 166
Score = 29.7 bits (67), Expect = 0.93
Identities = 11/63 (17%), Positives = 23/63 (36%), Gaps = 1/63 (1%)
Query: 7 LFDWNQDGLIDREEFAFCWNRWIKVIVRPKSALLVINVQNDFVSGTLNMSQRSAKQNGLQ 66
FD + +G IDR +F+ + + + + ++ A ++G Q
Sbjct: 12 TFDQDGNGHIDRSDFSGAAKAMLAEFGVAARSDRGQALYGGAEALWQGLAGI-ADRDGDQ 70
Query: 67 VIE 69
I
Sbjct: 71 RIT 73
Score = 27.0 bits (60), Expect = 7.0
Identities = 4/16 (25%), Positives = 8/16 (50%)
Query: 7 LFDWNQDGLIDREEFA 22
+ D + DG + + A
Sbjct: 106 VADTDGDGAVTVADTA 121
Score = 26.6 bits (59), Expect = 9.1
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 9 DWNQDGLIDREEFAFCWNRWIK 30
D + D I REEF + ++
Sbjct: 65 DRDGDQRITREEFVTGAVKRLR 86
>2sas_A Sarcoplasmic calcium-binding protein; 2.40A {Branchiostoma
lanceolatum} SCOP: a.39.1.5
Length = 185
Score = 29.5 bits (66), Expect = 1.1
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 5 NTLFDWNQDGLIDREEFAFCWNRWIKV 31
+ D N DG I +F R+ +V
Sbjct: 15 DFFLDMNHDGSIQDNDFEDMMTRYKEV 41
Score = 27.2 bits (60), Expect = 6.4
Identities = 2/22 (9%), Positives = 5/22 (22%)
Query: 8 FDWNQDGLIDREEFAFCWNRWI 29
D + + R +
Sbjct: 148 ITDGGKVTFDLNRYKELYYRLL 169
>1uhk_A Aequorin 2, aequorin; EF-hand motif, complex, luminescent
protein; HET: CZN; 1.60A {Aequorea victoria} SCOP:
a.39.1.5 PDB: 1ej3_A* 1uhi_A* 1uhj_A* 1uhh_A* 1sl8_A
Length = 191
Score = 29.4 bits (66), Expect = 1.2
Identities = 5/23 (21%), Positives = 10/23 (43%)
Query: 7 LFDWNQDGLIDREEFAFCWNRWI 29
D N +G I +E + + +
Sbjct: 24 FLDVNHNGKISLDEMVYKASDIV 46
>1qtw_A Endonuclease IV; DNA repair enzyme, TIM barrel, trinuclear Zn
cluster, hydrolase; 1.02A {Escherichia coli} SCOP:
c.1.15.1 PDB: 1qum_A* 2nqh_A 2nqj_A* 2nq9_A*
Length = 285
Score = 29.8 bits (67), Expect = 1.2
Identities = 14/80 (17%), Positives = 29/80 (36%), Gaps = 5/80 (6%)
Query: 224 TILIEDCCR-----GMDLDDIERTRNTILENYGSCVQSDEVKSMVEGKDRRPELGLKLAL 278
T +IE+ G + + + + + V D + G D R +
Sbjct: 141 TAVIENTAGQGSNLGFKFEHLAAIIDGVEDKSRVGVCIDTCHAFAAGYDLRTPAECEKTF 200
Query: 279 ELKAKCIGSLYVRVIESNNS 298
A+ +G Y+R + N++
Sbjct: 201 ADFARTVGFKYLRGMHLNDA 220
>1nya_A Calerythrin; EF-hand, metal binding protein; NMR
{Saccharopolyspora erythraea} SCOP: a.39.1.5
Length = 176
Score = 29.0 bits (65), Expect = 1.6
Identities = 4/24 (16%), Positives = 12/24 (50%)
Query: 7 LFDWNQDGLIDREEFAFCWNRWIK 30
+D++ +G ++R +F +
Sbjct: 15 RWDFDGNGALERADFEKEAQHIAE 38
Score = 28.2 bits (63), Expect = 2.8
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 7 LFDWNQDGLIDREEFA 22
+ D N DG I+ +EFA
Sbjct: 110 MCDKNADGQINADEFA 125
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 29.6 bits (66), Expect = 1.7
Identities = 17/90 (18%), Positives = 40/90 (44%), Gaps = 27/90 (30%)
Query: 53 LNMSQRSAK--QNGLQ-VIEPINK----LLDTVNFN-------------AVFYSLDWHPS 92
+N + +A Q LQ V+E + K L++ VN+N A+ ++ +
Sbjct: 1812 INPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRAL-DTV----T 1866
Query: 93 NHISFID--NIKLRKIHYTSTVQPEDAQTY 120
N ++FI I + ++ + +++ + +
Sbjct: 1867 NVLNFIKLQKIDIIELQKSLSLEEVEGHLF 1896
>2x7v_A Probable endonuclease 4; DNA repair protein, metal-binding,
hydrolase, DNA damage, DN; 2.30A {Thermotoga maritima
MSB8} PDB: 2x7w_A*
Length = 287
Score = 29.0 bits (65), Expect = 1.9
Identities = 15/79 (18%), Positives = 33/79 (41%), Gaps = 5/79 (6%)
Query: 225 ILIEDCCR-----GMDLDDIERTRNTILENYGSCVQSDEVKSMVEGKDRRPELGLKLALE 279
IL+E+ + G L+ +++ R+ + + + D G D + G++ L
Sbjct: 141 ILLENVSQKGGNIGYKLEQLKKIRDLVDQRDRVAITYDTCHGFDSGYDITKKEGVEALLN 200
Query: 280 LKAKCIGSLYVRVIESNNS 298
G +++I N+S
Sbjct: 201 EIESLFGLERLKMIHLNDS 219
>2jq6_A EH domain-containing protein 1; metal binding protein; NMR {Homo
sapiens} PDB: 2kff_A 2kfg_A 2kfh_A 2ksp_A
Length = 139
Score = 28.4 bits (63), Expect = 2.0
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 6 TLFDWNQDGLIDREEFAFCW 25
L D ++DGL+D EEFA
Sbjct: 91 KLADVDKDGLLDDEEFALAN 110
>1snl_A Nucleobindin 1, calnuc; EF-hand, calcium-binding, metal binding
protein; NMR {Homo sapiens} SCOP: a.39.1.7
Length = 103
Score = 27.6 bits (61), Expect = 2.0
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 7 LFDWNQDGLIDREEF 21
D NQD L+ EEF
Sbjct: 80 NVDTNQDRLVTLEEF 94
>2hps_A Coelenterazine-binding protein with bound coelent;
bioluminescence, southeast collabora structural
genomics, secsg, structural genomics, PSI; HET: CTZ;
1.72A {Renilla muelleri} PDB: 2hq8_A
Length = 186
Score = 28.6 bits (64), Expect = 2.4
Identities = 8/24 (33%), Positives = 10/24 (41%)
Query: 7 LFDWNQDGLIDREEFAFCWNRWIK 30
D DG I RE++ R K
Sbjct: 22 RVDVTGDGFISREDYELIAVRIAK 45
Score = 27.8 bits (62), Expect = 3.8
Identities = 5/16 (31%), Positives = 8/16 (50%)
Query: 7 LFDWNQDGLIDREEFA 22
D ++DG + EF
Sbjct: 110 CIDTDKDGYVSLPEFK 125
Score = 27.4 bits (61), Expect = 6.0
Identities = 7/14 (50%), Positives = 11/14 (78%)
Query: 8 FDWNQDGLIDREEF 21
D+N++G I R+EF
Sbjct: 147 LDFNKNGQISRDEF 160
Score = 26.6 bits (59), Expect = 8.9
Identities = 4/23 (17%), Positives = 5/23 (21%)
Query: 8 FDWNQDGLIDREEFAFCWNRWIK 30
I EE A +
Sbjct: 68 LGLAPGVRISVEEAAVNATDSLL 90
>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform
A; EF-hand like, unknown function; 1.60A {Homo sapiens}
SCOP: a.39.1.7
Length = 105
Score = 27.1 bits (60), Expect = 3.5
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 8 FDWNQDGLIDREEF 21
FD + I REEF
Sbjct: 33 FDTMKTNTISREEF 46
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand,
EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB:
2jxc_A 1f8h_A 1ff1_A
Length = 106
Score = 27.1 bits (60), Expect = 3.6
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 7 LFDWNQDGLIDREEFAFCW 25
L D + DG++DR+EFA
Sbjct: 56 LSDIDHDGMLDRDEFAVAM 74
>2uwa_A Cellulase; glycoside hydrolase, xyloglucan-endo-transferase,
hydrolase, glycosidase, family GH16, tropaeolum majus
xyloglucanase; 1.8A {Tropaeolum majus} PDB: 2uwc_A
2uwb_A 2vh9_A*
Length = 274
Score = 28.1 bits (62), Expect = 3.7
Identities = 12/64 (18%), Positives = 21/64 (32%), Gaps = 14/64 (21%)
Query: 85 YSLDWHPSNHISFIDNIKLRKIHYTSTVQPEDAQTYDTVVFDGDTPMKQK--LWPRHCVQ 142
Y++ W PS I F+D++ +R+ S P+ +W
Sbjct: 147 YAIYWTPSEIIFFVDDVPIRRYPRKSD------------ATFPLRPLWVYGSVWDASSWA 194
Query: 143 DSWG 146
G
Sbjct: 195 TENG 198
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15);
calcium binding, signaling domain, NPF binding, FW
binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP:
a.39.1.6
Length = 95
Score = 27.0 bits (60), Expect = 3.8
Identities = 5/17 (29%), Positives = 10/17 (58%)
Query: 6 TLFDWNQDGLIDREEFA 22
+L D G + +++FA
Sbjct: 51 SLCDTKDCGKLSKDQFA 67
>3li6_A Calcium-binding protein; calcium signaling protein, assemble free
energy, dynamic behaviour, cytoskeleton, metal binding;
2.50A {Entamoeba histolytica}
Length = 66
Score = 26.0 bits (58), Expect = 3.8
Identities = 6/14 (42%), Positives = 7/14 (50%)
Query: 8 FDWNQDGLIDREEF 21
D N DG + EE
Sbjct: 9 IDVNGDGAVSYEEV 22
Score = 25.2 bits (56), Expect = 7.1
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 8 FDWNQDGLIDREEF 21
D + +G ID+ EF
Sbjct: 45 IDADGNGEIDQNEF 58
>1q80_A SCP, sarcoplasmic calcium-binding protein; all-alpha, metal binding
protein; NMR {Neanthes diversicolor} SCOP: a.39.1.5 PDB:
2scp_A
Length = 174
Score = 27.8 bits (62), Expect = 3.9
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 7 LFDWNQDGLIDREEFA 22
D N+D I R+E+
Sbjct: 102 AVDTNEDNNISRDEYG 117
Score = 27.8 bits (62), Expect = 4.0
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 7 LFDWNQDGLIDREEFAFCWNRWIK 30
D+++DG I R +F R+ K
Sbjct: 14 RIDFDKDGAITRMDFESMAERFAK 37
>2hpk_A Photoprotein berovin; structural genomics, PSI, protein structure
initiative, southeast collaboratory for structural
genomics, secsg; 2.00A {Beroe abyssicola}
Length = 208
Score = 27.9 bits (62), Expect = 4.0
Identities = 6/24 (25%), Positives = 13/24 (54%)
Query: 7 LFDWNQDGLIDREEFAFCWNRWIK 30
FD + DG ++ +E + +R +
Sbjct: 44 TFDLDSDGKMEMDEVLYWPDRMRQ 67
>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY, metal
transport; 2.20A {Homo sapiens} SCOP: a.39.1.8 PDB:
2jc2_A
Length = 198
Score = 27.8 bits (62), Expect = 4.5
Identities = 5/21 (23%), Positives = 8/21 (38%)
Query: 7 LFDWNQDGLIDREEFAFCWNR 27
+ D + G + EF W
Sbjct: 81 MLDRDMSGTMGFNEFKELWAV 101
>1r94_A Protein YFHF; tetrameric, beta barrel, iron-sulfur cluster
protein, pseudo-symmetric motifs, metal transport;
2.30A {Escherichia coli} SCOP: b.124.1.1 PDB: 1r95_A
1s98_A
Length = 118
Score = 26.8 bits (60), Expect = 4.5
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 29 IKVIVRPKSALLVINVQNDFVSGTLN 54
+KV+V KS + Q DFV LN
Sbjct: 60 VKVVVDGKSLQFLDGTQLDFVKEGLN 85
>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell
junction, cell projection, coiled coil, endocytosis,
membrane, phosphoprotein; NMR {Homo sapiens}
Length = 111
Score = 26.7 bits (59), Expect = 5.4
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 7 LFDWNQDGLIDREEFA 22
L D +QDG + EEF
Sbjct: 56 LSDIDQDGKLTAEEFI 71
>3k8p_C DSL1, KLLA0C02695P; intracellular trafficking, DSL1 complex,
multisubunit tethering complex, snare proteins; 2.60A
{Kluyveromyces lactis}
Length = 357
Score = 27.7 bits (61), Expect = 5.8
Identities = 10/60 (16%), Positives = 19/60 (31%)
Query: 87 LDWHPSNHISFIDNIKLRKIHYTSTVQPEDAQTYDTVVFDGDTPMKQKLWPRHCVQDSWG 146
+ + I +I + H +VQ + D + +K +SWG
Sbjct: 11 FESMMQQRVIQIRSIPEEEYHELVSVQFKTDGGKYEKGEKQDLELSEKKTENGKDTESWG 70
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium,
RAS signal transduction, endocytosis/exocytosis
complex; NMR {Mus musculus} SCOP: a.39.1.6
Length = 92
Score = 26.2 bits (58), Expect = 5.9
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 6 TLFDWNQDGLIDREEFA 22
L D+++DG + +EF
Sbjct: 50 ELSDFDKDGALTLDEFC 66
>1gjy_A Sorcin, CP-22, V19; calcium binding, calcium-binding,
phosphorylation; 2.2A {Chinese hamster} SCOP: a.39.1.8
Length = 167
Score = 27.0 bits (60), Expect = 6.2
Identities = 5/21 (23%), Positives = 8/21 (38%)
Query: 7 LFDWNQDGLIDREEFAFCWNR 27
+ D + G + EF W
Sbjct: 50 MLDRDMSGTMGFNEFKELWAV 70
>2be4_A Hypothetical protein LOC449832; DR.36843, BC083168, calicium
binding, EF-hand superfamily, S genomics, protein
structure initiative, PSI; 2.10A {Danio rerio} PDB:
2q4u_A
Length = 272
Score = 27.3 bits (60), Expect = 6.5
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 7 LFDWNQDGLIDREEFA 22
D N+DG I + E A
Sbjct: 248 HCDMNKDGKIQKSELA 263
>2f33_A Calbindin; EF-hand, Ca2+-binding, metal binding protein; NMR
{Rattus norvegicus} PDB: 2g9b_A
Length = 263
Score = 27.1 bits (60), Expect = 8.4
Identities = 4/21 (19%), Positives = 8/21 (38%)
Query: 4 KNTLFDWNQDGLIDREEFAFC 24
K + + G + R + A
Sbjct: 237 KKNIMALSDGGKLYRTDLALI 257
>1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal
binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8
PDB: 1k95_A 1f4q_A 1f4o_A
Length = 165
Score = 26.6 bits (59), Expect = 9.2
Identities = 4/21 (19%), Positives = 7/21 (33%)
Query: 7 LFDWNQDGLIDREEFAFCWNR 27
+ D + G + F W
Sbjct: 48 MLDRDHTGKMGFNAFKELWAA 68
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.136 0.413
Gapped
Lambda K H
0.267 0.0615 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,279,285
Number of extensions: 310314
Number of successful extensions: 1146
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1108
Number of HSP's successfully gapped: 112
Length of query: 340
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 246
Effective length of database: 4,077,219
Effective search space: 1002995874
Effective search space used: 1002995874
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.4 bits)