BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8943
(134 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3NNE|A Chain A, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|B Chain B, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|C Chain C, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|D Chain D, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|E Chain E, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|F Chain F, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|G Chain G, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|H Chain H, Crystal Structure Of Choline Oxidase S101a Mutant
Length = 546
Score = 51.6 bits (122), Expect = 1e-07, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 50/81 (61%), Gaps = 5/81 (6%)
Query: 10 GSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRD--GRKHIIRA 67
G+R S+S +++ PI ++N + +A +L+FD + G++I+ G H + A
Sbjct: 205 GTRSSSSVSYIHPIVEQENFTLLTGLRARQLVFDAD---RRCTGVDIVDSAFGHTHRLTA 261
Query: 68 KKEIISSAGAINSPQLLMVSG 88
+ E++ S GAI++P+LLM+SG
Sbjct: 262 RNEVVLSTGAIDTPKLLMLSG 282
Score = 36.6 bits (83), Expect = 0.004, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 86 VSGGSSVLNAMIYVRGNKNDYDQWE-RLGNSGWGYKDVLPYFKKSEDNRN 134
V GG S NA I + D D+WE + G +GW + P +K+ E N +
Sbjct: 92 VMGGCSSHNACIAFWAPREDLDEWEAKYGATGWNAEAAWPLYKRLETNED 141
>pdb|2JBV|A Chain A, Crystal Structure Of Choline Oxidase Reveals Insights Into
The Catalytic Mechanism
pdb|2JBV|B Chain B, Crystal Structure Of Choline Oxidase Reveals Insights Into
The Catalytic Mechanism
Length = 546
Score = 51.6 bits (122), Expect = 1e-07, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 50/81 (61%), Gaps = 5/81 (6%)
Query: 10 GSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRD--GRKHIIRA 67
G+R S+S +++ PI ++N + +A +L+FD + G++I+ G H + A
Sbjct: 205 GTRSSSSVSYIHPIVEQENFTLLTGLRARQLVFDAD---RRCTGVDIVDSAFGHTHRLTA 261
Query: 68 KKEIISSAGAINSPQLLMVSG 88
+ E++ S GAI++P+LLM+SG
Sbjct: 262 RNEVVLSTGAIDTPKLLMLSG 282
Score = 35.4 bits (80), Expect = 0.009, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 86 VSGGSSVLNAMIYVRGNKNDYDQWE-RLGNSGWGYKDVLPYFKKSEDNRN 134
V GG S N+ I + D D+WE + G +GW + P +K+ E N +
Sbjct: 92 VMGGCSSHNSCIAFWAPREDLDEWEAKYGATGWNAEAAWPLYKRLETNED 141
>pdb|3LJP|A Chain A, Crystal Structure Of Choline Oxidase V464a Mutant
pdb|3LJP|B Chain B, Crystal Structure Of Choline Oxidase V464a Mutant
Length = 546
Score = 51.6 bits (122), Expect = 1e-07, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 50/81 (61%), Gaps = 5/81 (6%)
Query: 10 GSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRD--GRKHIIRA 67
G+R S+S +++ PI ++N + +A +L+FD + G++I+ G H + A
Sbjct: 205 GTRSSSSVSYIHPIVEQENFTLLTGLRARQLVFDAD---RRCTGVDIVDSAFGHTHRLTA 261
Query: 68 KKEIISSAGAINSPQLLMVSG 88
+ E++ S GAI++P+LLM+SG
Sbjct: 262 RNEVVLSTGAIDTPKLLMLSG 282
Score = 35.4 bits (80), Expect = 0.009, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 86 VSGGSSVLNAMIYVRGNKNDYDQWE-RLGNSGWGYKDVLPYFKKSEDNRN 134
V GG S N+ I + D D+WE + G +GW + P +K+ E N +
Sbjct: 92 VMGGCSSHNSCIAFWAPREDLDEWEAKYGATGWNAEAAWPLYKRLETNED 141
>pdb|3Q9T|A Chain A, Crystal Structure Analysis Of Formate Oxidase
pdb|3Q9T|B Chain B, Crystal Structure Analysis Of Formate Oxidase
pdb|3Q9T|C Chain C, Crystal Structure Analysis Of Formate Oxidase
Length = 577
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 26/42 (61%)
Query: 88 GGSSVLNAMIYVRGNKNDYDQWERLGNSGWGYKDVLPYFKKS 129
GGSS LN +V G+K +DQWE G W + ++PY +KS
Sbjct: 91 GGSSSLNYFTWVPGHKATFDQWEEFGGKEWTWDPLVPYLRKS 132
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 5/83 (6%)
Query: 6 TIRRGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHII 65
TI RG R S +FL ++ + N+ I E + RL+ +++ K V + + G +
Sbjct: 202 TIYRGQR---SGSFLF-VKNKPNITIVPEVHSKRLIINEADRTCKGVTV-VTAAGNELNF 256
Query: 66 RAKKEIISSAGAINSPQLLMVSG 88
A +E+I S G +P+LLM+SG
Sbjct: 257 FADREVILSQGVFETPKLLMLSG 279
>pdb|3FIM|B Chain B, Crystal Structure Of Aryl-Alcohol-Oxidase From Pleurotus
Eryingii
Length = 566
Score = 46.6 bits (109), Expect = 4e-06, Method: Composition-based stats.
Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 7/89 (7%)
Query: 5 GTIRRGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKSG-----PVPKAVGIEILRD 59
++ G R S+S A+LRP + R NL + + Q +L+ SG P + V
Sbjct: 199 ASVGNGQRSSSSTAYLRPAQSRPNLSVLINAQVTKLV--NSGTTNGLPAFRCVEYAEQEG 256
Query: 60 GRKHIIRAKKEIISSAGAINSPQLLMVSG 88
+ AKKE++ SAG++ +P LL +SG
Sbjct: 257 APTTTVCAKKEVVLSAGSVGTPILLQLSG 285
Score = 37.7 bits (86), Expect = 0.002, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 33/54 (61%), Gaps = 7/54 (12%)
Query: 88 GGSSVLNAMIYVRGNKNDYDQWERL-GNSGWGYKDVLPYFKKSE------DNRN 134
GGSS ++ M+ +RG+ D+D++ + G+ GW + ++ + +K+E DN N
Sbjct: 85 GGSSSVHYMVMMRGSTEDFDRYAAVTGDEGWNWDNIQQFVRKNEMVVPPADNHN 138
>pdb|1CF3|A Chain A, Glucose Oxidase From Apergillus Niger
pdb|1GAL|A Chain A, Crystal Structure Of Glucose Oxidase From Aspergillus
Niger: Refined At 2.3 Angstroms Resolution
pdb|3QVP|A Chain A, Crystal Structure Of Glucose Oxidase For Space Group C2221
At 1.2 A Resolution
pdb|3QVR|A Chain A, Crystal Structure Of Glucose Oxidase For Space Group P3121
At 1.3 A Resolution
Length = 583
Score = 46.6 bits (109), Expect = 4e-06, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 12 RCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEI-LRDGRKHIIRAKKE 70
R ++ +L P R NL + ++L ++G P+AVG+E G H + AK E
Sbjct: 225 RSDAAREWLLPNYQRPNLQVLTGQYVGKVLLSQNGTTPRAVGVEFGTHKGNTHNVYAKHE 284
Query: 71 IISSAGAINSPQLLMVSG 88
++ +AG+ SP +L SG
Sbjct: 285 VLLAAGSAVSPTILEYSG 302
Score = 38.1 bits (87), Expect = 0.002, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 88 GGSSVLNAMIYVRGNKNDYDQWERL-GNSGWGYKDVLPYFKKSEDNR 133
GGS+++N + R +K D WE + GN GW + +V Y ++E R
Sbjct: 101 GGSTLVNGGTWTRPHKAQVDSWETVFGNEGWNWDNVAAYSLQAERAR 147
>pdb|3T37|A Chain A, Crystal Structure Of Pyridoxine 4-Oxidase From Mesorbium
Loti
Length = 526
Score = 45.4 bits (106), Expect = 1e-05, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 32/46 (69%), Gaps = 1/46 (2%)
Query: 88 GGSSVLNAMIYVRGNKNDYDQW-ERLGNSGWGYKDVLPYFKKSEDN 132
GGSS L+AM Y+RG+ +D+ W + G+ WG+ ++LP F+ ED+
Sbjct: 98 GGSSCLHAMGYMRGHPSDFQAWVDASGDRRWGWDELLPVFQAIEDH 143
Score = 36.2 bits (82), Expect = 0.005, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 8/84 (9%)
Query: 7 IRRGSRCSTSKAFL-RPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEIL-RDGRKHI 64
IR G R + + A+L + +R RKNL I ++ RL + + + +E++ R G +
Sbjct: 203 IRDGRRVTAADAWLTKAVRGRKNLTILTGSRVRRLKLEGN----QVRSLEVVGRQGSAEV 258
Query: 65 IRAKKEIISSAGAINSPQLLMVSG 88
+I+ AGA+ SP LLM SG
Sbjct: 259 F--ADQIVLCAGALESPALLMRSG 280
>pdb|3RED|A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|B Chain B, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|C Chain C, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|D Chain D, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|E Chain E, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|F Chain F, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|G Chain G, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|H Chain H, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|I Chain I, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|J Chain J, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|K Chain K, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|L Chain L, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
Length = 521
Score = 42.0 bits (97), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 5/65 (7%)
Query: 28 NLHIAMETQALRLLFDKSGPVPKAVGIEILRD--GRKH--IIRAKKEIISSAGAINSPQL 83
NL +A+ +++F + A+G+ I +D G H +R + E+I SAG I SPQL
Sbjct: 208 NLRVAVHASVEKIIFSSNSSGVTAIGV-IYKDSNGTPHQAFVRGEGEVIVSAGPIGSPQL 266
Query: 84 LMVSG 88
L++SG
Sbjct: 267 LLLSG 271
>pdb|1JU2|A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond
pdb|1JU2|B Chain B, Crystal Structure Of The Hydroxynitrile Lyase From Almond
Length = 536
Score = 40.8 bits (94), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 6/65 (9%)
Query: 28 NLHIAMETQALRLLFDKSGPVPKAVGIEILRD--GRKH--IIRAKKEIISSAGAINSPQL 83
NL + + +++F + P A G+ I RD G H +R+K E+I SAG I +PQL
Sbjct: 208 NLRVGVHASVEKIIFSNA-PGLTATGV-IYRDSNGTPHQAFVRSKGEVIVSAGTIGTPQL 265
Query: 84 LMVSG 88
L++SG
Sbjct: 266 LLLSG 270
Score = 26.6 bits (57), Expect = 4.3, Method: Composition-based stats.
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 86 VSGGSSVLNAMIYVRGNKNDY 106
V GG+S++NA +Y R N + Y
Sbjct: 102 VLGGTSIINAGVYARANTSIY 122
>pdb|3GDN|A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde
pdb|3GDN|B Chain B, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde
pdb|3GDP|A Chain A, Hydroxynitrile Lyase From Almond, Monoclinic Crystal Form
pdb|3GDP|B Chain B, Hydroxynitrile Lyase From Almond, Monoclinic Crystal Form
Length = 521
Score = 40.8 bits (94), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 6/65 (9%)
Query: 28 NLHIAMETQALRLLFDKSGPVPKAVGIEILRD--GRKH--IIRAKKEIISSAGAINSPQL 83
NL + + +++F + P A G+ I RD G H +R+K E+I SAG I +PQL
Sbjct: 208 NLRVGVHASVEKIIFSNA-PGLTATGV-IYRDSNGTPHQAFVRSKGEVIVSAGTIGTPQL 265
Query: 84 LMVSG 88
L++SG
Sbjct: 266 LLLSG 270
Score = 26.6 bits (57), Expect = 4.3, Method: Composition-based stats.
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 86 VSGGSSVLNAMIYVRGNKNDY 106
V GG+S++NA +Y R N + Y
Sbjct: 102 VLGGTSIINAGVYARANTSIY 122
>pdb|1GPE|A Chain A, Glucose Oxidase From Penicillium Amagasakiense
pdb|1GPE|B Chain B, Glucose Oxidase From Penicillium Amagasakiense
Length = 587
Score = 39.7 bits (91), Expect = 5e-04, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 88 GGSSVLNAMIYVRGNKNDYDQWERL-GNSGWGYKDVLPYFKKSEDNR 133
GGS+++N + R +K D WE++ G GW + ++ Y KK+E R
Sbjct: 105 GGSTLINGDSWTRPDKVQIDSWEKVFGMEGWNWDNMFEYMKKAEAAR 151
Score = 38.5 bits (88), Expect = 0.001, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 12 RCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHI-IRAKKE 70
R ++A+L P R NL I ++LF ++ P+AVG+ + + + AK E
Sbjct: 229 RVDAARAWLLPNYQRSNLEILTGQMVGKVLFKQTASGPQAVGVNFGTNKAVNFDVFAKHE 288
Query: 71 IISSAGAINSPQLLMVSG 88
++ +AG+ SP +L SG
Sbjct: 289 VLLAAGSAISPLILEYSG 306
>pdb|2EDR|A Chain A, Solution Structure Of The Ig-Like Domain (3361-3449) Of
Human Obscurin
Length = 102
Score = 32.3 bits (72), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 21/43 (48%)
Query: 24 RLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIR 66
RLR I T LR K+ PV G E LRDG +H +R
Sbjct: 14 RLRHQESIEGATATLRCELSKAAPVEWRKGRESLRDGDRHSLR 56
>pdb|3GYX|A Chain A, Crystal Structure Of Adenylylsulfate Reductase From
Desulfovibrio Gigas
pdb|3GYX|C Chain C, Crystal Structure Of Adenylylsulfate Reductase From
Desulfovibrio Gigas
pdb|3GYX|E Chain E, Crystal Structure Of Adenylylsulfate Reductase From
Desulfovibrio Gigas
pdb|3GYX|G Chain G, Crystal Structure Of Adenylylsulfate Reductase From
Desulfovibrio Gigas
pdb|3GYX|I Chain I, Crystal Structure Of Adenylylsulfate Reductase From
Desulfovibrio Gigas
pdb|3GYX|K Chain K, Crystal Structure Of Adenylylsulfate Reductase From
Desulfovibrio Gigas
Length = 662
Score = 30.0 bits (66), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 38 LRLLFDKSGP--VPKAVGIEILRDGRKHIIRAKKEIISSAGAIN 79
++LL DK+ P + AVG LR HI +A +++ GA+N
Sbjct: 192 VKLLLDKNTPNRIAGAVGFN-LRANEVHIFKANAMVVACGGAVN 234
>pdb|2GQH|A Chain A, Solution Structure Of The 15th Ig-Like Domain Of Human
Kiaa1556 Protein
Length = 107
Score = 29.6 bits (65), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 10 GSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIR 66
GS S+ F +R + + A T L+ K+ PV G+E LRDG K+ +R
Sbjct: 1 GSSGSSGARFTEGLRNEEAMEGA--TATLQCELSKAAPVEWRKGLEALRDGDKYSLR 55
>pdb|3VR8|A Chain A, Mitochondrial Rhodoquinol-Fumarate Reductase From The
Parasitic Nematode Ascaris Suum
pdb|3VR8|E Chain E, Mitochondrial Rhodoquinol-Fumarate Reductase From The
Parasitic Nematode Ascaris Suum
pdb|3VRB|A Chain A, Mitochondrial Rhodoquinol-Fumarate Reductase From The
Parasitic Nematode Ascaris Suum With The Specific
Inhibitor Flutolanil And Substrate Fumarate
pdb|3VRB|E Chain E, Mitochondrial Rhodoquinol-Fumarate Reductase From The
Parasitic Nematode Ascaris Suum With The Specific
Inhibitor Flutolanil And Substrate Fumarate
Length = 645
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Query: 25 LRKNLHIAMETQALRLLFDKSGPVPKAVGI--EILRDGRKHIIRAKKEIISSAG 76
LR + +E AL LL DK + VG+ L DG H R+K+ I+++ G
Sbjct: 189 LRCHCTFFIEYFALDLLMDKG----RCVGVIALCLEDGTIHRFRSKRTIVATGG 238
>pdb|2EDH|A Chain A, Solution Structure Of The Pdz Domain (3614- 3713 ) From
Human Obscurin
Length = 113
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Query: 35 TQALRLLFDKSGPVPKAVGIEILRDGRKHIIR---AKKEI-ISSAGAINSPQLLMVSGGS 90
T LR K PV G E LRDG +H +R A+ E+ I A ++ + L + G
Sbjct: 36 TAVLRCELSKMAPVEWWKGHETLRDGDRHSLRQDGARCELQIRGLVAEDAGEYLCMCGKE 95
Query: 91 SVLNAMIYVR 100
+AM+ VR
Sbjct: 96 RT-SAMLTVR 104
>pdb|2GOO|B Chain B, Ternary Complex Of Bmp-2 Bound To Bmpr-Ia-Ecd And
Actrii-Ecd
pdb|2GOO|E Chain E, Ternary Complex Of Bmp-2 Bound To Bmpr-Ia-Ecd And
Actrii-Ecd
Length = 131
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 89 GSSVLNAMIYVRGNKNDYDQWERLGNSGWGYKDVLPYFK 127
GS L++M++ G K+D DQ + +D LP+ K
Sbjct: 1 GSQNLDSMLHGTGMKSDSDQKKSENGVTLAPEDTLPFLK 39
>pdb|2EDQ|A Chain A, Solution Structure Of The Ig-Like Domain (3713-3806) Of
Human Obscurin
Length = 107
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 19/42 (45%)
Query: 25 LRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIR 66
LR +T L K+ PV G E LRDG +H +R
Sbjct: 15 LRNEEATEGDTATLWCELSKAAPVEWRKGHETLRDGDRHSLR 56
>pdb|3OM0|A Chain A, Crystal Structure Of The Gluk5 (Ka2) Atd Crystallographic
Dimer At 1.4 Angstrom Resolution
pdb|3OM1|A Chain A, Crystal Structure Of The Gluk5 (Ka2) Atd Dimer At 1.7
Angstrom Resolution
pdb|3OM1|B Chain B, Crystal Structure Of The Gluk5 (Ka2) Atd Dimer At 1.7
Angstrom Resolution
pdb|3QLU|A Chain A, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD DIMER
ASSEMBLY
pdb|3QLU|B Chain B, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD DIMER
ASSEMBLY
pdb|3QLV|A Chain A, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
pdb|3QLV|B Chain B, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
pdb|3QLV|E Chain E, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
pdb|3QLV|G Chain G, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
pdb|3QLV|I Chain I, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
Length = 393
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 13 CSTSKAFLRPIRLRKNLHIAMETQALRLLFDKSGPVP 49
C+ ++ LR L + I+ ET ++R+L D P P
Sbjct: 146 CAKAECLLRLEELVRGFLISKETLSVRMLDDSRDPTP 182
>pdb|3PUM|A Chain A, Crystal Structure Of P Domain Dimer Of Norovirus Va207
pdb|3PUM|B Chain B, Crystal Structure Of P Domain Dimer Of Norovirus Va207
pdb|3PUN|A Chain A, Crystal Structure Of P Domain Dimer Of Norovirus Va207
With Lewis Y Tetrasaccharide
pdb|3PUN|B Chain B, Crystal Structure Of P Domain Dimer Of Norovirus Va207
With Lewis Y Tetrasaccharide
pdb|3PVD|A Chain A, Crystal Structure Of P Domain Dimer Of Norovirus Va207
Complexed With 3'-Sialyl-Lewis X Tetrasaccharide
pdb|3PVD|B Chain B, Crystal Structure Of P Domain Dimer Of Norovirus Va207
Complexed With 3'-Sialyl-Lewis X Tetrasaccharide
Length = 316
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 7/14 (50%), Positives = 12/14 (85%)
Query: 97 IYVRGNKNDYDQWE 110
IY+ GN +D++QW+
Sbjct: 167 IYIEGNSSDFNQWQ 180
>pdb|1IUG|A Chain A, The Crystal Structure Of Aspartate Aminotransferase Which
Belongs To Subgroup Iv From Thermus Thermophilus
pdb|1IUG|B Chain B, The Crystal Structure Of Aspartate Aminotransferase Which
Belongs To Subgroup Iv From Thermus Thermophilus
Length = 352
Score = 26.6 bits (57), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 52/115 (45%), Gaps = 19/115 (16%)
Query: 18 AFLRPIRLRKNLHIAMETQALRLLF---DKSG--PVPK----AVGIEILRDGRKHIIRAK 68
A L + R H+A++ LL+ ++ G PVPK AV L +G +
Sbjct: 241 AVLEEVLPRLEEHLALKAWQNALLYGVGEEGGLRPVPKRFSPAVAAFYLPEGVPYA--RV 298
Query: 69 KEIISSAGAINSPQLLMVSGGSSVLNAMIYVRGNKNDYDQWERLGNSGWGYKDVL 123
KE + GA+ ++GG L ++ YD++E LG +G +++VL
Sbjct: 299 KEAFAQRGAV-------IAGGQGPLKGKVFRLSLMGAYDRYEALGVAGM-FREVL 345
>pdb|2Q1W|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
pdb|2Q1W|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
pdb|2Q1W|C Chain C, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
Length = 333
Score = 26.2 bits (56), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 43/105 (40%), Gaps = 11/105 (10%)
Query: 5 GTIRRGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHI 64
G + RGS K F+ I + HIA LL ++ K VGI+ GR+
Sbjct: 13 GLVPRGSH--MKKVFITGICGQIGSHIA------ELLLERGD---KVVGIDNFATGRREH 61
Query: 65 IRAKKEIISSAGAINSPQLLMVSGGSSVLNAMIYVRGNKNDYDQW 109
++ + G+I L+ G +A+++ + D D W
Sbjct: 62 LKDHPNLTFVEGSIADHALVNQLIGDLQPDAVVHTAASYKDPDDW 106
>pdb|4I8E|X Chain X, Gspb Plus Alpha-2,3-Sialyl (1-Thioethyl)galactose
Length = 391
Score = 26.2 bits (56), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 58 RDGRKHIIRAKKEIISSAGAINSPQ 82
RDGRK II K I + AG+I+ Q
Sbjct: 356 RDGRKDIIDGSKFIDTRAGSISKSQ 380
>pdb|1XHL|A Chain A, Crystal Structure Of Putative Tropinone Reductase-Ii From
Caenorhabditis Elegans With Cofactor And Substrate
pdb|1XHL|B Chain B, Crystal Structure Of Putative Tropinone Reductase-Ii From
Caenorhabditis Elegans With Cofactor And Substrate
Length = 297
Score = 25.8 bits (55), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 9/29 (31%), Positives = 19/29 (65%)
Query: 54 IEILRDGRKHIIRAKKEIISSAGAINSPQ 82
IE+ + ++H+I+ K EI++ + + PQ
Sbjct: 144 IEMTQKTKEHLIKTKGEIVNVSSIVAGPQ 172
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,909,699
Number of Sequences: 62578
Number of extensions: 144111
Number of successful extensions: 368
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 328
Number of HSP's gapped (non-prelim): 39
length of query: 134
length of database: 14,973,337
effective HSP length: 88
effective length of query: 46
effective length of database: 9,466,473
effective search space: 435457758
effective search space used: 435457758
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)