BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8943
(134 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P18173|DHGL_DROME Glucose dehydrogenase [acceptor] OS=Drosophila melanogaster GN=Gld
PE=3 SV=3
Length = 625
Score = 79.0 bits (193), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 33/47 (70%), Positives = 37/47 (78%)
Query: 86 VSGGSSVLNAMIYVRGNKNDYDQWERLGNSGWGYKDVLPYFKKSEDN 132
V GG+SVLN M+YVRGN+ DYD W GN GW Y DVLP+FKKSEDN
Sbjct: 146 VLGGTSVLNGMMYVRGNREDYDDWAADGNPGWAYNDVLPFFKKSEDN 192
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/89 (44%), Positives = 56/89 (62%), Gaps = 3/89 (3%)
Query: 1 MIAQGTIRRGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRD- 59
MIAQ T R G R S+++AFLRP R+R NLHI + T A ++L +G+E+
Sbjct: 247 MIAQMTARNGIRYSSARAFLRPARMRNNLHILLNTTATKILIHPH--TKNVLGVEVSDQF 304
Query: 60 GRKHIIRAKKEIISSAGAINSPQLLMVSG 88
G I KKE++ SAGA+NSP +L++SG
Sbjct: 305 GSTRKILVKKEVVLSAGAVNSPHILLLSG 333
>sp|P18172|DHGL_DROPS Glucose dehydrogenase [acceptor] OS=Drosophila pseudoobscura
pseudoobscura GN=Gld PE=3 SV=4
Length = 625
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 31/47 (65%), Positives = 38/47 (80%)
Query: 86 VSGGSSVLNAMIYVRGNKNDYDQWERLGNSGWGYKDVLPYFKKSEDN 132
V GG+SV+N M+Y+RGN+ DYD W GN GW Y+DVLP+FKKSEDN
Sbjct: 146 VLGGTSVMNGMMYIRGNREDYDDWAAQGNPGWSYQDVLPFFKKSEDN 192
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/89 (46%), Positives = 55/89 (61%), Gaps = 3/89 (3%)
Query: 1 MIAQGTIRRGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRD- 59
MIAQ T R G R S+++AFLRP R+R NLHI + T ++L VG+E+
Sbjct: 247 MIAQMTARNGIRYSSARAFLRPARMRNNLHILLNTTVTKVLIHPG--TKNVVGVEVSDQF 304
Query: 60 GRKHIIRAKKEIISSAGAINSPQLLMVSG 88
G I KKE+I S GA+NSPQ+L++SG
Sbjct: 305 GSMRKILVKKEVIVSGGAVNSPQILLLSG 333
>sp|Q6UPE0|CHDH_RAT Choline dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Chdh
PE=1 SV=1
Length = 599
Score = 77.0 bits (188), Expect = 3e-14, Method: Composition-based stats.
Identities = 39/83 (46%), Positives = 55/83 (66%), Gaps = 4/83 (4%)
Query: 6 TIRRGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHII 65
TI +G R ST+ A+LRP R NL ++T R+LF+ + +AVG+E ++DG+ H
Sbjct: 236 TIHQGKRWSTASAYLRPALSRPNLRAEVQTLVSRVLFEGT----RAVGVEYIKDGQSHKA 291
Query: 66 RAKKEIISSAGAINSPQLLMVSG 88
+E+I S GAINSPQLLM+SG
Sbjct: 292 YVSREVILSGGAINSPQLLMLSG 314
Score = 63.9 bits (154), Expect = 3e-10, Method: Composition-based stats.
Identities = 25/45 (55%), Positives = 33/45 (73%)
Query: 86 VSGGSSVLNAMIYVRGNKNDYDQWERLGNSGWGYKDVLPYFKKSE 130
V GGSS LNAM+Y+RG+ DY++W R G GW Y LPYF+K++
Sbjct: 132 VWGGSSSLNAMVYIRGHAEDYNRWHRQGAEGWDYAHCLPYFRKAQ 176
>sp|P64264|Y1310_MYCBO Uncharacterized GMC-type oxidoreductase Mb1310 OS=Mycobacterium
bovis (strain ATCC BAA-935 / AF2122/97) GN=Mb1310 PE=3
SV=1
Length = 528
Score = 75.9 bits (185), Expect = 7e-14, Method: Composition-based stats.
Identities = 38/83 (45%), Positives = 55/83 (66%), Gaps = 4/83 (4%)
Query: 6 TIRRGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHII 65
T RRG+R ST+ A+L+P RKNL + A R++ D +AVG+E DG+ I+
Sbjct: 190 TQRRGARFSTADAYLKPAMRRKNLRVLTGATATRVVIDGD----RAVGVEYQSDGQTRIV 245
Query: 66 RAKKEIISSAGAINSPQLLMVSG 88
A++E++ AGA+NSPQLLM+SG
Sbjct: 246 YARREVVLCAGAVNSPQLLMLSG 268
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 23/46 (50%), Positives = 31/46 (67%)
Query: 86 VSGGSSVLNAMIYVRGNKNDYDQWERLGNSGWGYKDVLPYFKKSED 131
V GGSS +NAM++VRG +DYD+W W Y DVL YF++ E+
Sbjct: 83 VLGGSSSMNAMMWVRGFASDYDEWAARAGPRWSYADVLGYFRRIEN 128
>sp|P64263|Y1279_MYCTU Uncharacterized GMC-type oxidoreductase Rv1279/MT1316
OS=Mycobacterium tuberculosis GN=Rv1279 PE=3 SV=1
Length = 528
Score = 75.9 bits (185), Expect = 7e-14, Method: Composition-based stats.
Identities = 38/83 (45%), Positives = 55/83 (66%), Gaps = 4/83 (4%)
Query: 6 TIRRGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHII 65
T RRG+R ST+ A+L+P RKNL + A R++ D +AVG+E DG+ I+
Sbjct: 190 TQRRGARFSTADAYLKPAMRRKNLRVLTGATATRVVIDGD----RAVGVEYQSDGQTRIV 245
Query: 66 RAKKEIISSAGAINSPQLLMVSG 88
A++E++ AGA+NSPQLLM+SG
Sbjct: 246 YARREVVLCAGAVNSPQLLMLSG 268
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 23/46 (50%), Positives = 31/46 (67%)
Query: 86 VSGGSSVLNAMIYVRGNKNDYDQWERLGNSGWGYKDVLPYFKKSED 131
V GGSS +NAM++VRG +DYD+W W Y DVL YF++ E+
Sbjct: 83 VLGGSSSMNAMMWVRGFASDYDEWAARAGPRWSYADVLGYFRRIEN 128
>sp|Q8BJ64|CHDH_MOUSE Choline dehydrogenase, mitochondrial OS=Mus musculus GN=Chdh PE=1
SV=1
Length = 596
Score = 75.1 bits (183), Expect = 1e-13, Method: Composition-based stats.
Identities = 37/83 (44%), Positives = 56/83 (67%), Gaps = 4/83 (4%)
Query: 6 TIRRGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHII 65
T+ +G R ST+ A+L P+ R NL ++T R+LF+ + +AVG+E ++DG++H
Sbjct: 233 TVHQGKRWSTACAYLHPVLSRPNLRAEVQTLVSRVLFEGT----RAVGVEYIKDGQRHKA 288
Query: 66 RAKKEIISSAGAINSPQLLMVSG 88
+E+I S GAINSPQLLM+SG
Sbjct: 289 YVSREVILSGGAINSPQLLMLSG 311
Score = 63.5 bits (153), Expect = 3e-10, Method: Composition-based stats.
Identities = 25/45 (55%), Positives = 33/45 (73%)
Query: 86 VSGGSSVLNAMIYVRGNKNDYDQWERLGNSGWGYKDVLPYFKKSE 130
V GGSS LNAM+Y+RG+ DY++W R G GW Y LPYF+K++
Sbjct: 129 VWGGSSSLNAMVYIRGHAEDYNRWHREGAEGWDYAHCLPYFRKAQ 173
>sp|Q8NE62|CHDH_HUMAN Choline dehydrogenase, mitochondrial OS=Homo sapiens GN=CHDH PE=2
SV=2
Length = 594
Score = 71.6 bits (174), Expect = 1e-12, Method: Composition-based stats.
Identities = 39/83 (46%), Positives = 52/83 (62%), Gaps = 4/83 (4%)
Query: 6 TIRRGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHII 65
TI G R S + A+L P R NL ET R+LF+ + +AVG+E +++G+ H
Sbjct: 231 TIHEGKRWSAACAYLHPALSRTNLKAEAETLVSRVLFEGT----RAVGVEYVKNGQSHRA 286
Query: 66 RAKKEIISSAGAINSPQLLMVSG 88
A KE+I S GAINSPQLLM+SG
Sbjct: 287 YASKEVILSGGAINSPQLLMLSG 309
Score = 65.1 bits (157), Expect = 1e-10, Method: Composition-based stats.
Identities = 26/45 (57%), Positives = 34/45 (75%)
Query: 86 VSGGSSVLNAMIYVRGNKNDYDQWERLGNSGWGYKDVLPYFKKSE 130
V GGSS LNAM+YVRG+ DY++W+R G GW Y LPYF+K++
Sbjct: 127 VWGGSSSLNAMVYVRGHAEDYERWQRQGARGWDYAHCLPYFRKAQ 171
>sp|Q985M5|BETA_RHILO Choline dehydrogenase OS=Rhizobium loti (strain MAFF303099) GN=betA
PE=3 SV=1
Length = 550
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 28/47 (59%), Positives = 35/47 (74%)
Query: 86 VSGGSSVLNAMIYVRGNKNDYDQWERLGNSGWGYKDVLPYFKKSEDN 132
V GGSS +N M+YVRG+ D+D W G +GWG+ DVLPYFK+ EDN
Sbjct: 83 VIGGSSSINGMVYVRGHARDFDHWAEEGATGWGFADVLPYFKRMEDN 129
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 54/83 (65%), Gaps = 5/83 (6%)
Query: 6 TIRRGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHII 65
TI G R S + A+L+P RKN+ + ++ A R++ + +A+G+EI + ++
Sbjct: 187 TISGGRRWSAASAYLKPALKRKNVSL-VKGFARRVIIENQ----RAIGVEIEAHKQIQVV 241
Query: 66 RAKKEIISSAGAINSPQLLMVSG 88
+A++E+I +A +INSP++LM+SG
Sbjct: 242 KARREVIVAASSINSPKILMLSG 264
>sp|C3MIE4|BETA_RHISN Choline dehydrogenase OS=Rhizobium sp. (strain NGR234) GN=betA PE=3
SV=1
Length = 549
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 28/48 (58%), Positives = 36/48 (75%)
Query: 86 VSGGSSVLNAMIYVRGNKNDYDQWERLGNSGWGYKDVLPYFKKSEDNR 133
V GGSS +N M+YVRG+ D+D+WE+LG GW Y DVLPYFK+ E +
Sbjct: 82 VIGGSSSINGMVYVRGHAEDFDRWEQLGAKGWAYADVLPYFKRMEHSH 129
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 53/87 (60%), Gaps = 5/87 (5%)
Query: 2 IAQGTIRRGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGR 61
+ + T RG R S + A+L+P R N+ + + A +++ + +A G+EI R GR
Sbjct: 182 LMEQTTWRGRRWSAASAYLKPALKRPNVQL-IRCFARKIVIENG----RATGVEIERGGR 236
Query: 62 KHIIRAKKEIISSAGAINSPQLLMVSG 88
+++A +E+I SA + NSP+LLM+SG
Sbjct: 237 IEVVKANREVIVSASSFNSPKLLMLSG 263
>sp|Q1MJU4|BETA_RHIL3 Choline dehydrogenase OS=Rhizobium leguminosarum bv. viciae (strain
3841) GN=betA PE=3 SV=1
Length = 549
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 28/48 (58%), Positives = 36/48 (75%)
Query: 86 VSGGSSVLNAMIYVRGNKNDYDQWERLGNSGWGYKDVLPYFKKSEDNR 133
V GGSS +N M+YVRG+ D+++WE LG SGW Y DVLPYFK+ E +
Sbjct: 82 VIGGSSSINGMVYVRGHAEDFNRWEELGASGWAYADVLPYFKRMEHSH 129
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 51/83 (61%), Gaps = 5/83 (6%)
Query: 6 TIRRGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHII 65
TI G R S + A+L+P R N+ I A R++ + +A G+EI R+GR ++
Sbjct: 186 TIFGGRRWSAANAYLKPALKRDNVKIVYGL-AQRIVIEDG----RATGVEIERNGRIEVV 240
Query: 66 RAKKEIISSAGAINSPQLLMVSG 88
+A +E+I SA + NSP+LLM+SG
Sbjct: 241 KANREVIVSASSFNSPKLLMLSG 263
>sp|B3PTE0|BETA_RHIE6 Choline dehydrogenase OS=Rhizobium etli (strain CIAT 652) GN=betA
PE=3 SV=1
Length = 549
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 28/48 (58%), Positives = 36/48 (75%)
Query: 86 VSGGSSVLNAMIYVRGNKNDYDQWERLGNSGWGYKDVLPYFKKSEDNR 133
V GGSS +N M+YVRG+ D+++WE LG SGW Y DVLPYFK+ E +
Sbjct: 82 VIGGSSSINGMVYVRGHAEDFNRWEELGASGWAYADVLPYFKRMEHSH 129
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 50/83 (60%), Gaps = 5/83 (6%)
Query: 6 TIRRGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHII 65
TI G R S + A+L+P RKN + M R + + G +A G+EI R G+ ++
Sbjct: 186 TIFSGRRWSAANAYLKPALKRKN--VGMVYGLARKIVIEDG---RATGVEIERGGKVEVV 240
Query: 66 RAKKEIISSAGAINSPQLLMVSG 88
+A +E+I SA + NSP+LLM+SG
Sbjct: 241 KATREVIVSASSFNSPKLLMLSG 263
>sp|Q2KB43|BETA_RHIEC Choline dehydrogenase OS=Rhizobium etli (strain CFN 42 / ATCC
51251) GN=betA PE=3 SV=1
Length = 549
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 28/48 (58%), Positives = 36/48 (75%)
Query: 86 VSGGSSVLNAMIYVRGNKNDYDQWERLGNSGWGYKDVLPYFKKSEDNR 133
V GGSS +N M+YVRG+ D+++WE LG SGW Y DVLPYFK+ E +
Sbjct: 82 VIGGSSSINGMVYVRGHAEDFNRWEELGASGWAYADVLPYFKRMEHSH 129
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 52/87 (59%), Gaps = 5/87 (5%)
Query: 2 IAQGTIRRGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGR 61
+ + TI G R S + A+L+P R N+ I A R++ + +A G+EI R GR
Sbjct: 182 LMEQTIFAGRRWSAANAYLKPALKRDNVGIVYGL-ARRIVIENG----RATGVEIERGGR 236
Query: 62 KHIIRAKKEIISSAGAINSPQLLMVSG 88
+++A +E+I SA + NSP+LLM+SG
Sbjct: 237 TEVVKANREVIVSASSFNSPKLLMLSG 263
>sp|A6U6Y8|BETA_SINMW Choline dehydrogenase OS=Sinorhizobium medicae (strain WSM419)
GN=betA PE=3 SV=1
Length = 549
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 27/48 (56%), Positives = 35/48 (72%)
Query: 86 VSGGSSVLNAMIYVRGNKNDYDQWERLGNSGWGYKDVLPYFKKSEDNR 133
V GGSS +N M+YVRG+ D+D+WE LG GW Y DVLPY+K+ E +
Sbjct: 82 VIGGSSSINGMVYVRGHSEDFDRWEELGAKGWAYADVLPYYKRMEHSH 129
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 53/87 (60%), Gaps = 5/87 (5%)
Query: 2 IAQGTIRRGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGR 61
+ + T RG R S + A+LRP R N+ + + A +++ + +A G+EI R GR
Sbjct: 182 LMEQTTWRGRRWSAASAYLRPALKRPNVEL-VRCFARKIVIENG----RATGVEIERGGR 236
Query: 62 KHIIRAKKEIISSAGAINSPQLLMVSG 88
++RA +E+I SA + NSP+LLM+SG
Sbjct: 237 TEVVRANREVIVSASSFNSPKLLMLSG 263
>sp|Q47944|SDH_GLUOY L-sorbose 1-dehydrogenase OS=Gluconobacter oxydans PE=3 SV=1
Length = 531
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 54/87 (62%), Gaps = 4/87 (4%)
Query: 2 IAQGTIRRGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGR 61
I Q TIR RCST+ +LRP RKNL + L+++F+ + +A G++ + +G
Sbjct: 183 IYQMTIRNNRRCSTAVGYLRPALGRKNLTVVTRALVLKIVFNGT----RATGVQYIANGT 238
Query: 62 KHIIRAKKEIISSAGAINSPQLLMVSG 88
+ A +EI+ +AGAI +P+L+M+SG
Sbjct: 239 LNTAEASQEIVVTAGAIGTPKLMMLSG 265
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 88 GGSSVLNAMIYVRGNKNDYDQWERLGNSGWGYKDVLPYFKKSEDN 132
GG S +NA ++ RG+ +D+D+W G GW ++DV YF +SE N
Sbjct: 85 GGGSSINAEVFTRGHPSDFDRWAAEGADGWSFRDVQKYFIRSEGN 129
>sp|B5ZUG2|BETA_RHILW Choline dehydrogenase OS=Rhizobium leguminosarum bv. trifolii
(strain WSM2304) GN=betA PE=3 SV=1
Length = 549
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 27/48 (56%), Positives = 35/48 (72%)
Query: 86 VSGGSSVLNAMIYVRGNKNDYDQWERLGNSGWGYKDVLPYFKKSEDNR 133
V GGSS +N M+YVRG+ D+++WE LG GW Y DVLPYFK+ E +
Sbjct: 82 VIGGSSSINGMVYVRGHAEDFNRWEELGAGGWAYADVLPYFKRMEHSH 129
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 54/87 (62%), Gaps = 5/87 (5%)
Query: 2 IAQGTIRRGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGR 61
+ + TI G R S + A+L+P RKN+ I + A R++ + +A G+EI R G+
Sbjct: 182 LMEQTIFSGRRWSAANAYLKPALKRKNVEI-IYGFAQRIVIEDG----RATGVEIERGGK 236
Query: 62 KHIIRAKKEIISSAGAINSPQLLMVSG 88
+++A +E+I SA + NSP+LLM+SG
Sbjct: 237 IEVVKANREVIVSASSFNSPKLLMLSG 263
>sp|B9JBA2|BETA_AGRRK Choline dehydrogenase OS=Agrobacterium radiobacter (strain K84 /
ATCC BAA-868) GN=betA PE=3 SV=1
Length = 549
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 27/48 (56%), Positives = 35/48 (72%)
Query: 86 VSGGSSVLNAMIYVRGNKNDYDQWERLGNSGWGYKDVLPYFKKSEDNR 133
V GGSS +N M+YVRG+ D+++WE LG GW Y DVLPYFK+ E +
Sbjct: 82 VIGGSSSINGMVYVRGHAEDFNRWEELGAQGWAYADVLPYFKRMEHSH 129
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 51/87 (58%), Gaps = 5/87 (5%)
Query: 2 IAQGTIRRGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGR 61
+ + T G R S + A+L+P R N+ + + A +++ + +A G+EI R G+
Sbjct: 182 LMEQTTWMGRRWSAATAYLKPALKRPNVEL-IRCFARKVVIENG----RATGVEIERGGK 236
Query: 62 KHIIRAKKEIISSAGAINSPQLLMVSG 88
I++A E+I SA + NSP+LLM+SG
Sbjct: 237 IEIVKANSEVIVSASSFNSPKLLMLSG 263
>sp|A6X2G7|BETA_OCHA4 Choline dehydrogenase OS=Ochrobactrum anthropi (strain ATCC 49188 /
DSM 6882 / NCTC 12168) GN=betA PE=3 SV=1
Length = 549
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 27/47 (57%), Positives = 33/47 (70%)
Query: 86 VSGGSSVLNAMIYVRGNKNDYDQWERLGNSGWGYKDVLPYFKKSEDN 132
V GGSS +N M+YVRG+ DYD W G GW Y DVLPYFK+ E++
Sbjct: 82 VLGGSSSINGMVYVRGHARDYDHWSESGARGWAYADVLPYFKRMENS 128
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 51/83 (61%), Gaps = 5/83 (6%)
Query: 6 TIRRGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHII 65
TI G R S + A+L+P R N+ + ++ A +++ + +AVG+EI I
Sbjct: 186 TIHNGRRWSAANAYLKPALKRPNVKL-VKGLARKIVLEGK----RAVGVEIEAGRSFSTI 240
Query: 66 RAKKEIISSAGAINSPQLLMVSG 88
RA++E+I +A +INSP+LLM+SG
Sbjct: 241 RARREVIIAASSINSPKLLMLSG 263
>sp|Q8UH55|BETA_AGRT5 Choline dehydrogenase OS=Agrobacterium tumefaciens (strain C58 /
ATCC 33970) GN=betA PE=3 SV=2
Length = 549
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 34/45 (75%)
Query: 86 VSGGSSVLNAMIYVRGNKNDYDQWERLGNSGWGYKDVLPYFKKSE 130
V GGSS +N ++YVRG+ D+++WE LG GW Y DVLPYFK+ E
Sbjct: 82 VIGGSSSINGLVYVRGHAEDFNRWEELGAQGWAYADVLPYFKRME 126
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 53/87 (60%), Gaps = 5/87 (5%)
Query: 2 IAQGTIRRGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGR 61
+ + TI G R S + A+L+P R N+ + + A +++ + +AVG+EI R GR
Sbjct: 182 LMEQTIHNGRRWSAANAYLKPALKRGNVTL-VNGFARKVIIENG----RAVGVEIERRGR 236
Query: 62 KHIIRAKKEIISSAGAINSPQLLMVSG 88
++A +E+I SA + NSP+LLM+SG
Sbjct: 237 VETVKANREVIVSASSFNSPKLLMLSG 263
>sp|P54223|BETA_RHIME Choline dehydrogenase OS=Rhizobium meliloti (strain 1021) GN=betA
PE=3 SV=2
Length = 549
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 35/48 (72%)
Query: 86 VSGGSSVLNAMIYVRGNKNDYDQWERLGNSGWGYKDVLPYFKKSEDNR 133
V GGSS +N M+YVRG+ D+++WE LG GW Y DVLPY+K+ E +
Sbjct: 82 VIGGSSSINGMVYVRGHSEDFNRWEELGAQGWAYADVLPYYKRMEHSH 129
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 53/87 (60%), Gaps = 5/87 (5%)
Query: 2 IAQGTIRRGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGR 61
+ + T RG R S + A+LRP R N+ + + A +++ + +A G+EI R GR
Sbjct: 182 LMEQTTWRGRRWSAASAYLRPALKRPNVEL-IRCFARKIVIENG----RATGVEIERGGR 236
Query: 62 KHIIRAKKEIISSAGAINSPQLLMVSG 88
+++A +E+I SA + NSP+LLM+SG
Sbjct: 237 IEVVKANREVIVSASSFNSPKLLMLSG 263
>sp|Q8YFY2|BETA_BRUME Choline dehydrogenase OS=Brucella melitensis biotype 1 (strain 16M
/ ATCC 23456 / NCTC 10094) GN=betA PE=3 SV=2
Length = 549
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 35/48 (72%)
Query: 86 VSGGSSVLNAMIYVRGNKNDYDQWERLGNSGWGYKDVLPYFKKSEDNR 133
V GGSS +N M+YVRG+ D+D W + G GW Y DVLPYFK+ E+++
Sbjct: 82 VLGGSSSINGMVYVRGHACDFDHWSQSGARGWAYADVLPYFKRMENSQ 129
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 51/83 (61%), Gaps = 5/83 (6%)
Query: 6 TIRRGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHII 65
TI G R S + A+L+P R N+ + ++ A +++ + +AVG+EI I
Sbjct: 186 TIHNGRRWSAANAYLKPALKRPNVKL-VKGFARKIVLEGK----RAVGVEIEAGRTFSTI 240
Query: 66 RAKKEIISSAGAINSPQLLMVSG 88
RA++E+I +A +INSP+LLM+SG
Sbjct: 241 RARREVIIAASSINSPKLLMLSG 263
>sp|B0CKN4|BETA_BRUSI Choline dehydrogenase OS=Brucella suis (strain ATCC 23445 / NCTC
10510) GN=betA PE=3 SV=1
Length = 549
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 35/48 (72%)
Query: 86 VSGGSSVLNAMIYVRGNKNDYDQWERLGNSGWGYKDVLPYFKKSEDNR 133
V GGSS +N M+YVRG+ D+D W + G GW Y DVLPYFK+ E+++
Sbjct: 82 VLGGSSSINGMVYVRGHACDFDHWSQSGARGWAYADVLPYFKRMENSQ 129
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 51/83 (61%), Gaps = 5/83 (6%)
Query: 6 TIRRGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHII 65
TI G R S + A+L+P R N+ + ++ A +++ + +AVG+EI I
Sbjct: 186 TIHNGRRWSAANAYLKPALKRPNVKL-VKGFARKIVLEGK----RAVGVEIEAGRTFSTI 240
Query: 66 RAKKEIISSAGAINSPQLLMVSG 88
RA++E+I +A +INSP+LLM+SG
Sbjct: 241 RARREVIIAASSINSPKLLMLSG 263
>sp|A5VPA6|BETA_BRUO2 Choline dehydrogenase OS=Brucella ovis (strain ATCC 25840 / 63/290
/ NCTC 10512) GN=betA PE=3 SV=1
Length = 549
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 35/48 (72%)
Query: 86 VSGGSSVLNAMIYVRGNKNDYDQWERLGNSGWGYKDVLPYFKKSEDNR 133
V GGSS +N M+YVRG+ D+D W + G GW Y DVLPYFK+ E+++
Sbjct: 82 VLGGSSSINGMVYVRGHACDFDHWSQSGARGWAYADVLPYFKRMENSQ 129
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 51/83 (61%), Gaps = 5/83 (6%)
Query: 6 TIRRGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHII 65
TI G R S + A+L+P R N+ + ++ A +++ + +AVG+EI I
Sbjct: 186 TIHNGRRWSAANAYLKPALKRPNVKL-VKGFARKIVLEGK----RAVGVEIEAGRTFSTI 240
Query: 66 RAKKEIISSAGAINSPQLLMVSG 88
RA++E+I +A +INSP+LLM+SG
Sbjct: 241 RARREVIIAASSINSPKLLMLSG 263
>sp|A9M9H8|BETA_BRUC2 Choline dehydrogenase OS=Brucella canis (strain ATCC 23365 / NCTC
10854) GN=betA PE=3 SV=1
Length = 549
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 35/48 (72%)
Query: 86 VSGGSSVLNAMIYVRGNKNDYDQWERLGNSGWGYKDVLPYFKKSEDNR 133
V GGSS +N M+YVRG+ D+D W + G GW Y DVLPYFK+ E+++
Sbjct: 82 VLGGSSSINGMVYVRGHACDFDHWSQSGARGWAYADVLPYFKRMENSQ 129
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 51/83 (61%), Gaps = 5/83 (6%)
Query: 6 TIRRGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHII 65
TI G R S + A+L+P R N+ + ++ A +++ + +AVG+EI I
Sbjct: 186 TIHNGRRWSAANAYLKPALKRPNVKL-VKGFARKIVLEGK----RAVGVEIEAGRTFSTI 240
Query: 66 RAKKEIISSAGAINSPQLLMVSG 88
RA++E+I +A +INSP+LLM+SG
Sbjct: 241 RARREVIIAASSINSPKLLMLSG 263
>sp|Q8G1Z8|BETA_BRUSU Choline dehydrogenase OS=Brucella suis biovar 1 (strain 1330)
GN=betA PE=3 SV=1
Length = 549
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 35/48 (72%)
Query: 86 VSGGSSVLNAMIYVRGNKNDYDQWERLGNSGWGYKDVLPYFKKSEDNR 133
V GGSS +N M+YVRG+ D+D W + G GW Y DVLPYFK+ E+++
Sbjct: 82 VLGGSSSINGMVYVRGHACDFDHWSQSGARGWAYADVLPYFKRMENSQ 129
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 51/83 (61%), Gaps = 5/83 (6%)
Query: 6 TIRRGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHII 65
TI G R S + A+L+P R N+ + ++ A +++ + +AVG+EI I
Sbjct: 186 TIHNGRRWSAANAYLKPALKRPNVKL-VKGFARKIVLEGK----RAVGVEIEAGRTFSTI 240
Query: 66 RAKKEIISSAGAINSPQLLMVSG 88
RA++E+I +A +INSP+LLM+SG
Sbjct: 241 RARREVIIAASSINSPKLLMLSG 263
>sp|Q4A0Q1|BETA_STAS1 Choline dehydrogenase OS=Staphylococcus saprophyticus subsp.
saprophyticus (strain ATCC 15305 / DSM 20229) GN=betA
PE=3 SV=1
Length = 560
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 48/82 (58%), Gaps = 5/82 (6%)
Query: 7 IRRGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIR 66
+ G R S S+A+L P RKNL + +L F+ + K G+ ++GR+H +
Sbjct: 194 VHNGRRVSASRAYLHPAMKRKNLEVQTRAFVTKLNFEGN----KVTGVTFKKNGREHTVN 249
Query: 67 AKKEIISSAGAINSPQLLMVSG 88
AK E+I S GAINSPQLL +SG
Sbjct: 250 AK-EVILSGGAINSPQLLQLSG 270
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 86 VSGGSSVLNAMIYVRGNKNDYDQWERL-GNSGWGYKDVLPYFKKSE 130
V GGSS +N MIY RGN DY++W + G W Y LPYFK+ E
Sbjct: 86 VLGGSSSINGMIYQRGNPMDYEKWAKPEGMDSWDYAHCLPYFKRLE 131
>sp|A7N2P9|BETA_VIBHB Choline dehydrogenase OS=Vibrio harveyi (strain ATCC BAA-1116 /
BB120) GN=betA PE=3 SV=1
Length = 569
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 33/45 (73%)
Query: 86 VSGGSSVLNAMIYVRGNKNDYDQWERLGNSGWGYKDVLPYFKKSE 130
V GGSS +N M+YVRG+ D+D+WE G GW Y+ LPYF+K+E
Sbjct: 84 VLGGSSSINGMVYVRGHACDFDEWEAEGAKGWNYQACLPYFRKAE 128
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 46/83 (55%), Gaps = 4/83 (4%)
Query: 6 TIRRGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHII 65
T+ +G R STS A+L + R N + A R+L + KAVGIE + G
Sbjct: 190 TVDKGVRASTSNAYLSRAKKRSNFTLMKGVTAHRILLEGK----KAVGIEFEQSGEIKQC 245
Query: 66 RAKKEIISSAGAINSPQLLMVSG 88
A KE++SSAG+I S QLL +SG
Sbjct: 246 FANKEVVSSAGSIGSVQLLQLSG 268
>sp|Q8D3K2|BETA_VIBVU Choline dehydrogenase OS=Vibrio vulnificus (strain CMCP6) GN=betA
PE=3 SV=1
Length = 560
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 34/46 (73%)
Query: 86 VSGGSSVLNAMIYVRGNKNDYDQWERLGNSGWGYKDVLPYFKKSED 131
V GGSS +N M+YVRG+ D+D+WE G GW Y+ LPYF+++E+
Sbjct: 84 VLGGSSSINGMVYVRGHACDFDEWEEQGAKGWNYQACLPYFRRAEN 129
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 45/83 (54%), Gaps = 4/83 (4%)
Query: 6 TIRRGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHII 65
T++ G R STS A+L + R N + R+L ++ +AVG+E G
Sbjct: 190 TVKNGVRASTSNAYLSRAKKRSNFKLIKGVVVQRILLEEK----RAVGVEFELAGELRTC 245
Query: 66 RAKKEIISSAGAINSPQLLMVSG 88
AK E+ISSAG+I S QLL +SG
Sbjct: 246 FAKNEVISSAGSIGSVQLLQLSG 268
>sp|Q7MF12|BETA_VIBVY Choline dehydrogenase OS=Vibrio vulnificus (strain YJ016) GN=betA
PE=3 SV=1
Length = 560
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 34/46 (73%)
Query: 86 VSGGSSVLNAMIYVRGNKNDYDQWERLGNSGWGYKDVLPYFKKSED 131
V GGSS +N M+YVRG+ D+D+WE G GW Y+ LPYF+++E+
Sbjct: 84 VLGGSSSINGMVYVRGHACDFDEWEEQGAKGWNYQACLPYFRRAEN 129
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 45/83 (54%), Gaps = 4/83 (4%)
Query: 6 TIRRGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHII 65
T++ G R STS A+L + R N + R+L ++ +AVG+E G
Sbjct: 190 TVKNGVRASTSNAYLSRAKKRSNFKLIKGVVVQRILLEEK----RAVGVEFELAGELRTC 245
Query: 66 RAKKEIISSAGAINSPQLLMVSG 88
AK E+ISSAG+I S QLL +SG
Sbjct: 246 FAKNEVISSAGSIGSVQLLQLSG 268
>sp|Q6LGH5|BETA_PHOPR Choline dehydrogenase OS=Photobacterium profundum GN=betA PE=3 SV=1
Length = 568
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 33/45 (73%)
Query: 86 VSGGSSVLNAMIYVRGNKNDYDQWERLGNSGWGYKDVLPYFKKSE 130
V GGSS +N M+YVRG+ DYD+W G GW Y++ LPYF+++E
Sbjct: 84 VLGGSSSINGMVYVRGHACDYDEWVEQGAEGWSYQECLPYFRRAE 128
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 46/83 (55%), Gaps = 4/83 (4%)
Query: 6 TIRRGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHII 65
T+ +G R STS A+LR R NL + ++L +A+G+EI G+ +
Sbjct: 190 TVDKGIRASTSNAYLRRAMKRSNLTVRKGVVTRKVLIKNK----QAIGVEIEVGGKVQSV 245
Query: 66 RAKKEIISSAGAINSPQLLMVSG 88
A E++ SAG++ SPQLL +SG
Sbjct: 246 YANTEVLLSAGSVGSPQLLQLSG 268
>sp|Q8CMY2|BETA_STAES Choline dehydrogenase OS=Staphylococcus epidermidis (strain ATCC
12228) GN=betA PE=3 SV=1
Length = 572
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 49/82 (59%), Gaps = 2/82 (2%)
Query: 7 IRRGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIR 66
+ G R S S+A+LRP R+NL + +L+FD++ K G+ ++G++H +
Sbjct: 196 VHHGRRMSASRAYLRPALRRRNLDVETRAFVTKLIFDENN-SKKVTGVTFKKNGKEHTVH 254
Query: 67 AKKEIISSAGAINSPQLLMVSG 88
A E+I S GA N+PQLL +SG
Sbjct: 255 A-NEVILSGGAFNTPQLLQLSG 275
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 86 VSGGSSVLNAMIYVRGNKNDYDQW-ERLGNSGWGYKDVLPYFKKSE 130
V GGSS +N MIY RGN DY+ W E G W + LPYFKK E
Sbjct: 88 VLGGSSSINGMIYQRGNPMDYEGWAEPEGMDTWDFAHCLPYFKKLE 133
>sp|Q8P5D7|BETA_XANCP Choline dehydrogenase OS=Xanthomonas campestris pv. campestris
(strain ATCC 33913 / NCPPB 528 / LMG 568) GN=betA PE=3
SV=1
Length = 556
Score = 62.4 bits (150), Expect = 8e-10, Method: Composition-based stats.
Identities = 26/44 (59%), Positives = 34/44 (77%), Gaps = 1/44 (2%)
Query: 88 GGSSVLNAMIYVRGNKNDYDQW-ERLGNSGWGYKDVLPYFKKSE 130
GGSS++N M Y+RGN D+D W +R G WGY+DVLPYF+K+E
Sbjct: 88 GGSSLINGMCYIRGNALDFDHWAKRPGLEDWGYRDVLPYFRKAE 131
Score = 45.8 bits (107), Expect = 7e-05, Method: Composition-based stats.
Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 6/82 (7%)
Query: 9 RGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHII--R 66
+G R ST++ +L + R +LHI R+LF +AVG+ L I
Sbjct: 196 QGRRASTARGYLDMAKPRDSLHIVTHATTDRILFAGK----RAVGVHYLVGNSSEGIDAH 251
Query: 67 AKKEIISSAGAINSPQLLMVSG 88
A++E++ AGAI SPQLL SG
Sbjct: 252 ARREVLVCAGAIASPQLLQRSG 273
>sp|B0RNU9|BETA_XANCB Choline dehydrogenase OS=Xanthomonas campestris pv. campestris
(strain B100) GN=betA PE=3 SV=1
Length = 556
Score = 62.4 bits (150), Expect = 8e-10, Method: Composition-based stats.
Identities = 26/44 (59%), Positives = 34/44 (77%), Gaps = 1/44 (2%)
Query: 88 GGSSVLNAMIYVRGNKNDYDQW-ERLGNSGWGYKDVLPYFKKSE 130
GGSS++N M Y+RGN D+D W +R G WGY+DVLPYF+K+E
Sbjct: 88 GGSSLINGMCYIRGNALDFDHWAKRPGLEDWGYRDVLPYFRKAE 131
Score = 45.8 bits (107), Expect = 7e-05, Method: Composition-based stats.
Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 6/82 (7%)
Query: 9 RGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHII--R 66
+G R ST++ +L + R +LHI R+LF +AVG+ L I
Sbjct: 196 QGRRASTARGYLDMAKPRDSLHIVTHATTDRILFAGK----RAVGVHYLVGNSSEGIDAH 251
Query: 67 AKKEIISSAGAINSPQLLMVSG 88
A++E++ AGAI SPQLL SG
Sbjct: 252 ARREVLVCAGAIASPQLLQRSG 273
>sp|Q4UYN5|BETA_XANC8 Choline dehydrogenase OS=Xanthomonas campestris pv. campestris
(strain 8004) GN=betA PE=3 SV=1
Length = 556
Score = 62.4 bits (150), Expect = 8e-10, Method: Composition-based stats.
Identities = 26/44 (59%), Positives = 34/44 (77%), Gaps = 1/44 (2%)
Query: 88 GGSSVLNAMIYVRGNKNDYDQW-ERLGNSGWGYKDVLPYFKKSE 130
GGSS++N M Y+RGN D+D W +R G WGY+DVLPYF+K+E
Sbjct: 88 GGSSLINGMCYIRGNALDFDHWAKRPGLEDWGYRDVLPYFRKAE 131
Score = 45.8 bits (107), Expect = 7e-05, Method: Composition-based stats.
Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 6/82 (7%)
Query: 9 RGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHII--R 66
+G R ST++ +L + R +LHI R+LF +AVG+ L I
Sbjct: 196 QGRRASTARGYLDMAKPRDSLHIVTHATTDRILFAGK----RAVGVHYLVGNSSEGIDAH 251
Query: 67 AKKEIISSAGAINSPQLLMVSG 88
A++E++ AGAI SPQLL SG
Sbjct: 252 ARREVLVCAGAIASPQLLQRSG 273
>sp|Q5HL11|BETA_STAEQ Choline dehydrogenase OS=Staphylococcus epidermidis (strain ATCC
35984 / RP62A) GN=betA PE=3 SV=1
Length = 572
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 49/82 (59%), Gaps = 2/82 (2%)
Query: 7 IRRGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIR 66
+ G R S S+A+LRP R+NL + +L+FD++ K G+ ++G++H +
Sbjct: 196 VHHGRRMSASRAYLRPALRRRNLDVETRAFVTKLIFDENN-SKKVTGVTFKKNGKEHTVH 254
Query: 67 AKKEIISSAGAINSPQLLMVSG 88
A E+I S GA N+PQLL +SG
Sbjct: 255 A-NEVILSGGAFNTPQLLQLSG 275
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 86 VSGGSSVLNAMIYVRGNKNDYDQW-ERLGNSGWGYKDVLPYFKKSE 130
V GGSS +N MIY RGN DY+ W E G W + LPYFKK E
Sbjct: 88 VLGGSSSINGMIYQRGNPMDYEGWAEPEGMDTWDFAHCLPYFKKLE 133
>sp|Q4L9D7|BETA_STAHJ Choline dehydrogenase OS=Staphylococcus haemolyticus (strain
JCSC1435) GN=betA PE=3 SV=1
Length = 568
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 46/82 (56%), Gaps = 5/82 (6%)
Query: 7 IRRGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIR 66
+ G R S S+A+L P RKNL + ++ FD + KA G+ R+GR H +
Sbjct: 195 VHNGRRVSASRAYLHPAMKRKNLTVKTRAFVTKIHFDGN----KATGVTFKRNGRYHTVD 250
Query: 67 AKKEIISSAGAINSPQLLMVSG 88
A E+I S GA N+PQLL +SG
Sbjct: 251 A-GEVILSGGAFNTPQLLQLSG 271
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 86 VSGGSSVLNAMIYVRGNKNDYDQW-ERLGNSGWGYKDVLPYFKKSE 130
V GGSS +N MIY RGN DY+ W E G W + LPYFK+ E
Sbjct: 87 VLGGSSSINGMIYQRGNPMDYEGWAEPEGMESWDFAHCLPYFKRLE 132
>sp|Q3BXK8|BETA_XANC5 Choline dehydrogenase OS=Xanthomonas campestris pv. vesicatoria
(strain 85-10) GN=betA PE=3 SV=1
Length = 556
Score = 60.1 bits (144), Expect = 4e-09, Method: Composition-based stats.
Identities = 25/44 (56%), Positives = 33/44 (75%), Gaps = 1/44 (2%)
Query: 88 GGSSVLNAMIYVRGNKNDYDQW-ERLGNSGWGYKDVLPYFKKSE 130
GGSS++N M Y+RGN D+D W +R G W Y+DVLPYF+K+E
Sbjct: 88 GGSSLINGMCYIRGNALDFDHWAKRPGLEDWSYRDVLPYFRKAE 131
Score = 47.0 bits (110), Expect = 4e-05, Method: Composition-based stats.
Identities = 30/82 (36%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
Query: 9 RGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHII--R 66
RG R ST++ +L + R LHI R+LF +A+G+ L I
Sbjct: 196 RGRRASTARGYLDMAKPRDGLHIVTHATTDRILFAGK----RAIGVHYLVGNSSEGIDAH 251
Query: 67 AKKEIISSAGAINSPQLLMVSG 88
A++E++ AGAI SPQLL SG
Sbjct: 252 ARREVLVCAGAIASPQLLQRSG 273
>sp|Q8PPG8|BETA_XANAC Choline dehydrogenase OS=Xanthomonas axonopodis pv. citri (strain
306) GN=betA PE=3 SV=1
Length = 556
Score = 60.1 bits (144), Expect = 4e-09, Method: Composition-based stats.
Identities = 25/44 (56%), Positives = 33/44 (75%), Gaps = 1/44 (2%)
Query: 88 GGSSVLNAMIYVRGNKNDYDQW-ERLGNSGWGYKDVLPYFKKSE 130
GGSS++N M Y+RGN D+D W +R G W Y+DVLPYF+K+E
Sbjct: 88 GGSSLINGMCYIRGNALDFDHWAKRPGLEDWSYRDVLPYFRKAE 131
Score = 47.0 bits (110), Expect = 4e-05, Method: Composition-based stats.
Identities = 30/82 (36%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
Query: 9 RGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHII--R 66
RG R ST++ +L + R LHI R+LF +A+G+ L I
Sbjct: 196 RGRRASTARGYLDMAKPRDGLHIVTHATTDRILFAGK----RAIGVHYLVGNSSEGIDAH 251
Query: 67 AKKEIISSAGAINSPQLLMVSG 88
A++E++ AGAI SPQLL SG
Sbjct: 252 ARREVLVCAGAIASPQLLQRSG 273
>sp|Q9X2M2|BETA_STAXY Choline dehydrogenase OS=Staphylococcus xylosus GN=betA PE=3 SV=1
Length = 560
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 47/82 (57%), Gaps = 5/82 (6%)
Query: 7 IRRGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIR 66
+ G R S S+A+L P RKNL + +L F+ + K G+ ++G++H
Sbjct: 194 VHNGRRVSASRAYLHPAMKRKNLEVQTRAFVTKLNFEGN----KVTGVTFKKNGKEHTES 249
Query: 67 AKKEIISSAGAINSPQLLMVSG 88
AK E+I S GAINSPQLL +SG
Sbjct: 250 AK-EVILSGGAINSPQLLQLSG 270
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 86 VSGGSSVLNAMIYVRGNKNDYDQWERL-GNSGWGYKDVLPYFKKSE 130
V GGSS +N MIY RGN DY++W + G W Y LPYFK+ E
Sbjct: 86 VLGGSSSINGMIYQRGNPMDYEKWAKPEGMESWDYAHCLPYFKRLE 131
>sp|C3K3D3|BETA_PSEFS Choline dehydrogenase OS=Pseudomonas fluorescens (strain SBW25)
GN=betA PE=3 SV=1
Length = 567
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 88 GGSSVLNAMIYVRGNKNDYDQWERL-GNSGWGYKDVLPYFKKSE 130
GGSS++N M Y+RGN DYD W +L G W Y D LPYF+K+E
Sbjct: 88 GGSSLINGMCYIRGNAMDYDNWAKLPGLENWTYLDCLPYFRKAE 131
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 6/83 (7%)
Query: 8 RRGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHII-- 65
+ G R ST++ +L + R L I ++LF+ +AVG+ L + +
Sbjct: 195 KNGRRASTARGYLDTAKKRSTLTIVTHALTDKVLFEGK----RAVGVRYLIGAAEERVEA 250
Query: 66 RAKKEIISSAGAINSPQLLMVSG 88
RA+KE++ +GAI SPQLL SG
Sbjct: 251 RARKEVLVCSGAIASPQLLQRSG 273
>sp|Q3K5H3|BETA_PSEPF Choline dehydrogenase OS=Pseudomonas fluorescens (strain Pf0-1)
GN=betA PE=3 SV=1
Length = 567
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 88 GGSSVLNAMIYVRGNKNDYDQWERL-GNSGWGYKDVLPYFKKSE 130
GGSS++N M Y+RGN DYD W +L G W Y D LPYF+K+E
Sbjct: 88 GGSSLINGMCYIRGNAMDYDGWAKLPGLEDWSYLDCLPYFRKAE 131
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 6/81 (7%)
Query: 10 GSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHII--RA 67
G R ST++ +L + R L I ++LF+ +AVG+ L + + RA
Sbjct: 197 GRRASTARGYLDVAKKRSTLTIVTHALTDKVLFEGK----RAVGVRYLVGAAEERVEARA 252
Query: 68 KKEIISSAGAINSPQLLMVSG 88
+KE+I +GAI SPQLL SG
Sbjct: 253 RKEVIVCSGAIASPQLLQRSG 273
>sp|B2JS89|BETA_BURP8 Choline dehydrogenase OS=Burkholderia phymatum (strain DSM 17167 /
STM815) GN=betA PE=3 SV=1
Length = 572
Score = 58.2 bits (139), Expect = 1e-08, Method: Composition-based stats.
Identities = 26/44 (59%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 88 GGSSVLNAMIYVRGNKNDYDQW-ERLGNSGWGYKDVLPYFKKSE 130
GGSS++N M Y+RGN DYD W ER G W Y D LPYF+K+E
Sbjct: 89 GGSSLINGMCYIRGNALDYDGWAERKGLENWTYLDCLPYFRKAE 132
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 43/80 (53%), Gaps = 6/80 (7%)
Query: 10 GSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHII-RAK 68
G R ST++ +L R R NL I R+LF +A G+ L DG+ I A+
Sbjct: 198 GRRASTARGYLDQARPRPNLTIVTYATTDRILFSGK----RAQGVVYL-DGQAQITAHAR 252
Query: 69 KEIISSAGAINSPQLLMVSG 88
+E++ +GAI SPQ+L SG
Sbjct: 253 REVLLCSGAIASPQILQRSG 272
>sp|Q4K4K7|BETA_PSEF5 Choline dehydrogenase OS=Pseudomonas fluorescens (strain Pf-5 /
ATCC BAA-477) GN=betA PE=3 SV=1
Length = 567
Score = 57.8 bits (138), Expect = 2e-08, Method: Composition-based stats.
Identities = 25/44 (56%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 88 GGSSVLNAMIYVRGNKNDYDQWERL-GNSGWGYKDVLPYFKKSE 130
GGSS++N M Y+RGN DYD W +L G W Y D LPYF+K+E
Sbjct: 88 GGSSLINGMCYIRGNAMDYDGWAKLPGLEDWTYLDCLPYFRKAE 131
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 6/82 (7%)
Query: 9 RGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHII--R 66
+G R ST++ +L + R L I ++LF+ +AVG+ L+ + + R
Sbjct: 196 KGRRASTARGYLDTAKKRSTLTIVTHALTDKILFEGK----RAVGVSYLQGSTEERVEAR 251
Query: 67 AKKEIISSAGAINSPQLLMVSG 88
A+KE+I S+GAI SPQLL SG
Sbjct: 252 ARKEVIVSSGAIASPQLLQRSG 273
>sp|Q9WWW2|ALKJ_PSEPU Alcohol dehydrogenase [acceptor] OS=Pseudomonas putida GN=alkJ PE=3
SV=1
Length = 552
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 50/87 (57%), Gaps = 6/87 (6%)
Query: 4 QGTIRRGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKH 63
Q T + G R S+++AFL + R NL I E A ++LF+ KAVG+ ++
Sbjct: 184 QVTQKHGQRWSSARAFLHDVIDRPNLDIITEAHATKVLFEDR----KAVGVSYIQKNMHQ 239
Query: 64 IIRAKK--EIISSAGAINSPQLLMVSG 88
++ E+I S GA+N+PQLLM+SG
Sbjct: 240 QVKTTDSGEVILSLGAVNTPQLLMLSG 266
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 31/46 (67%)
Query: 88 GGSSVLNAMIYVRGNKNDYDQWERLGNSGWGYKDVLPYFKKSEDNR 133
GGSS +NAM+Y+RG++ DY WE+ G WG+K FKK E N+
Sbjct: 83 GGSSSINAMVYIRGHEEDYQAWEQAGGEYWGWKRAFALFKKLEHNQ 128
>sp|Q8NUM0|BETA_STAAW Choline dehydrogenase OS=Staphylococcus aureus (strain MW2) GN=betA
PE=3 SV=1
Length = 569
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 48/82 (58%), Gaps = 5/82 (6%)
Query: 7 IRRGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIR 66
+ RG R S S+A+L P RKNL +ET+A G +A G+ ++G+ H I
Sbjct: 197 VHRGRRMSASRAYLHPAMKRKNL--TVETRAFVTEIHYEGR--RATGVTYKKNGKLHTID 252
Query: 67 AKKEIISSAGAINSPQLLMVSG 88
AK E+I S GA N+PQLL +SG
Sbjct: 253 AK-EVILSGGAFNTPQLLQLSG 273
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 86 VSGGSSVLNAMIYVRGNKNDYDQW-ERLGNSGWGYKDVLPYFKKSE 130
V GGSS +N MIY RGN DY+ W E G W + LPYFKK E
Sbjct: 89 VLGGSSSINGMIYQRGNPMDYEGWAEPEGMETWDFAHCLPYFKKLE 134
>sp|Q6G664|BETA_STAAS Choline dehydrogenase OS=Staphylococcus aureus (strain MSSA476)
GN=betA PE=3 SV=1
Length = 569
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 48/82 (58%), Gaps = 5/82 (6%)
Query: 7 IRRGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIR 66
+ RG R S S+A+L P RKNL +ET+A G +A G+ ++G+ H I
Sbjct: 197 VHRGRRMSASRAYLHPAMKRKNL--TVETRAFVTEIHYEGR--RATGVTYKKNGKLHTID 252
Query: 67 AKKEIISSAGAINSPQLLMVSG 88
AK E+I S GA N+PQLL +SG
Sbjct: 253 AK-EVILSGGAFNTPQLLQLSG 273
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 86 VSGGSSVLNAMIYVRGNKNDYDQW-ERLGNSGWGYKDVLPYFKKSE 130
V GGSS +N MIY RGN DY+ W E G W + LPYFKK E
Sbjct: 89 VLGGSSSINGMIYQRGNPMDYEGWAEPEGMETWDFAHCLPYFKKLE 134
>sp|Q66D54|BETA_YERPS Choline dehydrogenase OS=Yersinia pseudotuberculosis serotype I
(strain IP32953) GN=betA PE=3 SV=1
Length = 567
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 88 GGSSVLNAMIYVRGNKNDYDQWERL-GNSGWGYKDVLPYFKKSE 130
GGSS++N M Y+RGN D+D W L G W Y D LPYF+K+E
Sbjct: 86 GGSSLINGMCYIRGNAMDFDHWASLSGLEDWSYLDCLPYFRKAE 129
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
Query: 9 RGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRD--GRKHIIR 66
+G R ST++ +L R R NL I R+LF+ +A G+ L+ G
Sbjct: 194 KGRRASTARGYLDQARPRNNLTIITHALTDRILFEGK----RATGVSYLKGDAGTGQTAH 249
Query: 67 AKKEIISSAGAINSPQLLMVSG 88
A++E++ GAI SPQ+L SG
Sbjct: 250 ARREVLLCGGAIASPQILQRSG 271
>sp|B2K8U4|BETA_YERPB Choline dehydrogenase OS=Yersinia pseudotuberculosis serotype IB
(strain PB1/+) GN=betA PE=3 SV=1
Length = 567
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 88 GGSSVLNAMIYVRGNKNDYDQWERL-GNSGWGYKDVLPYFKKSE 130
GGSS++N M Y+RGN D+D W L G W Y D LPYF+K+E
Sbjct: 86 GGSSLINGMCYIRGNAMDFDHWASLSGLEDWSYLDCLPYFRKAE 129
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
Query: 9 RGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRD--GRKHIIR 66
+G R ST++ +L R R NL I R+LF+ +A G+ L+ G
Sbjct: 194 KGRRASTARGYLDQARPRNNLTIITHALTDRILFEGK----RATGVSYLKGDAGTGQTAH 249
Query: 67 AKKEIISSAGAINSPQLLMVSG 88
A++E++ GAI SPQ+L SG
Sbjct: 250 ARREVLLCGGAIASPQILQRSG 271
>sp|A4TNP2|BETA_YERPP Choline dehydrogenase OS=Yersinia pestis (strain Pestoides F)
GN=betA PE=3 SV=1
Length = 567
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 88 GGSSVLNAMIYVRGNKNDYDQWERL-GNSGWGYKDVLPYFKKSE 130
GGSS++N M Y+RGN D+D W L G W Y D LPYF+K+E
Sbjct: 86 GGSSLINGMCYIRGNAMDFDHWASLSGLEDWSYLDCLPYFRKAE 129
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
Query: 9 RGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRD--GRKHIIR 66
+G R ST++ +L R R NL I R+LF+ +A G+ L+ G
Sbjct: 194 KGRRASTARGYLDQARPRNNLTIITHALTDRILFEGK----RATGVRYLKGDAGTGQTAY 249
Query: 67 AKKEIISSAGAINSPQLLMVSG 88
A++E++ GAI SPQ+L SG
Sbjct: 250 ARREVLLCGGAIASPQILQRSG 271
>sp|Q1CFR7|BETA_YERPN Choline dehydrogenase OS=Yersinia pestis bv. Antiqua (strain
Nepal516) GN=betA PE=3 SV=1
Length = 567
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 88 GGSSVLNAMIYVRGNKNDYDQWERL-GNSGWGYKDVLPYFKKSE 130
GGSS++N M Y+RGN D+D W L G W Y D LPYF+K+E
Sbjct: 86 GGSSLINGMCYIRGNAMDFDHWASLSGLEDWSYLDCLPYFRKAE 129
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
Query: 9 RGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRD--GRKHIIR 66
+G R ST++ +L R R NL I R+LF+ +A G+ L+ G
Sbjct: 194 KGRRASTARGYLDQARPRNNLTIITHALTDRILFEGK----RATGVRYLKGDAGTGQTAY 249
Query: 67 AKKEIISSAGAINSPQLLMVSG 88
A++E++ GAI SPQ+L SG
Sbjct: 250 ARREVLLCGGAIASPQILQRSG 271
>sp|Q8ZGW0|BETA_YERPE Choline dehydrogenase OS=Yersinia pestis GN=betA PE=3 SV=1
Length = 567
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 88 GGSSVLNAMIYVRGNKNDYDQWERL-GNSGWGYKDVLPYFKKSE 130
GGSS++N M Y+RGN D+D W L G W Y D LPYF+K+E
Sbjct: 86 GGSSLINGMCYIRGNAMDFDHWASLSGLEDWSYLDCLPYFRKAE 129
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
Query: 9 RGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRD--GRKHIIR 66
+G R ST++ +L R R NL I R+LF+ +A G+ L+ G
Sbjct: 194 KGRRASTARGYLDQARPRNNLTIITHALTDRILFEGK----RATGVRYLKGDAGTGQTAY 249
Query: 67 AKKEIISSAGAINSPQLLMVSG 88
A++E++ GAI SPQ+L SG
Sbjct: 250 ARREVLLCGGAIASPQILQRSG 271
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.136 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,317,793
Number of Sequences: 539616
Number of extensions: 1845973
Number of successful extensions: 4529
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 4065
Number of HSP's gapped (non-prelim): 319
length of query: 134
length of database: 191,569,459
effective HSP length: 100
effective length of query: 34
effective length of database: 137,607,859
effective search space: 4678667206
effective search space used: 4678667206
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)