Query psy8943
Match_columns 134
No_of_seqs 176 out of 1142
Neff 7.4
Searched_HMMs 46136
Date Fri Aug 16 23:23:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8943.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8943hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1238|consensus 99.8 7.8E-20 1.7E-24 155.2 7.0 92 2-95 241-334 (623)
2 PF00732 GMC_oxred_N: GMC oxid 99.8 1.5E-19 3.4E-24 140.9 4.8 87 6-94 185-273 (296)
3 PRK02106 choline dehydrogenase 99.8 1.4E-18 3E-23 147.3 8.3 86 3-92 190-275 (560)
4 TIGR01810 betA choline dehydro 99.8 2E-18 4.3E-23 145.5 8.7 86 3-92 183-268 (532)
5 PLN02785 Protein HOTHEAD 99.6 1.6E-15 3.4E-20 129.9 8.7 83 8-92 216-303 (587)
6 COG2303 BetA Choline dehydroge 99.6 1.8E-15 3.9E-20 128.4 8.3 88 2-93 191-280 (542)
7 TIGR02462 pyranose_ox pyranose 99.4 8.2E-13 1.8E-17 112.3 8.3 82 8-91 204-291 (544)
8 KOG1238|consensus 99.1 1.9E-11 4.1E-16 104.5 2.5 46 87-132 140-185 (623)
9 TIGR01810 betA choline dehydro 98.7 8.2E-09 1.8E-13 87.3 1.8 46 87-132 82-128 (532)
10 PRK02106 choline dehydrogenase 98.6 2.2E-08 4.8E-13 85.2 1.7 46 87-132 88-134 (560)
11 COG2303 BetA Choline dehydroge 98.4 1.1E-07 2.4E-12 81.0 1.3 45 88-132 88-133 (542)
12 PF00732 GMC_oxred_N: GMC oxid 98.1 3.8E-07 8.2E-12 71.1 -0.6 45 88-132 81-126 (296)
13 PRK12835 3-ketosteroid-delta-1 97.6 0.00031 6.8E-09 60.5 8.0 58 20-80 219-276 (584)
14 PRK12837 3-ketosteroid-delta-1 97.5 0.00044 9.6E-09 58.6 8.1 56 22-81 182-237 (513)
15 PRK07843 3-ketosteroid-delta-1 97.3 0.00093 2E-08 57.2 7.8 57 24-84 218-274 (557)
16 PLN02785 Protein HOTHEAD 97.2 0.00016 3.5E-09 62.5 1.6 40 87-132 131-170 (587)
17 PRK12844 3-ketosteroid-delta-1 97.2 0.0017 3.7E-08 55.7 7.8 54 24-81 218-271 (557)
18 PRK07121 hypothetical protein; 97.0 0.0027 5.9E-08 53.3 7.6 54 24-80 187-240 (492)
19 PRK12845 3-ketosteroid-delta-1 96.8 0.0043 9.3E-08 53.4 7.1 53 25-81 228-280 (564)
20 PF00890 FAD_binding_2: FAD bi 96.8 0.004 8.6E-08 50.7 6.4 50 26-80 153-204 (417)
21 PRK12839 hypothetical protein; 96.7 0.006 1.3E-07 52.6 7.3 53 25-80 225-277 (572)
22 PRK06134 putative FAD-binding 96.6 0.008 1.7E-07 51.8 7.5 55 24-82 227-281 (581)
23 PRK06175 L-aspartate oxidase; 96.6 0.011 2.3E-07 49.2 7.6 51 25-80 140-190 (433)
24 PRK12843 putative FAD-binding 96.5 0.0094 2E-07 51.3 7.3 54 24-81 231-284 (578)
25 PRK13977 myosin-cross-reactive 96.5 0.018 3.8E-07 50.0 8.8 63 17-79 226-293 (576)
26 PRK08274 tricarballylate dehyd 96.4 0.013 2.8E-07 48.8 6.9 59 24-87 141-200 (466)
27 PRK05675 sdhA succinate dehydr 96.3 0.018 3.9E-07 49.6 7.6 52 25-80 137-190 (570)
28 TIGR01811 sdhA_Bsu succinate d 96.2 0.022 4.8E-07 49.4 7.6 50 26-79 145-196 (603)
29 TIGR01816 sdhA_forward succina 96.2 0.022 4.7E-07 49.0 7.5 51 25-80 130-182 (565)
30 PRK09078 sdhA succinate dehydr 96.1 0.025 5.5E-07 49.0 7.4 52 25-80 160-213 (598)
31 PRK12842 putative succinate de 96.0 0.026 5.7E-07 48.5 7.2 52 24-79 224-275 (574)
32 PRK07573 sdhA succinate dehydr 96.0 0.027 5.8E-07 49.3 7.2 51 25-80 181-233 (640)
33 PRK08958 sdhA succinate dehydr 95.9 0.039 8.4E-07 47.8 7.7 52 25-80 154-207 (588)
34 PRK06263 sdhA succinate dehydr 95.9 0.032 6.9E-07 47.6 7.0 52 25-80 145-198 (543)
35 PTZ00139 Succinate dehydrogena 95.8 0.038 8.1E-07 48.1 7.2 52 25-80 177-230 (617)
36 TIGR01813 flavo_cyto_c flavocy 95.8 0.041 8.8E-07 45.4 7.1 53 24-80 140-193 (439)
37 PRK07395 L-aspartate oxidase; 95.7 0.028 6.2E-07 48.3 6.1 52 25-79 146-197 (553)
38 PLN02815 L-aspartate oxidase 95.7 0.045 9.7E-07 47.6 7.2 53 25-80 167-223 (594)
39 PRK06452 sdhA succinate dehydr 95.6 0.054 1.2E-06 46.6 7.6 49 26-79 148-198 (566)
40 PLN00128 Succinate dehydrogena 95.6 0.05 1.1E-06 47.6 7.3 52 25-80 198-251 (635)
41 PRK07803 sdhA succinate dehydr 95.5 0.06 1.3E-06 46.9 7.6 48 28-80 165-214 (626)
42 PRK08275 putative oxidoreducta 95.4 0.064 1.4E-06 45.9 7.3 52 24-79 147-200 (554)
43 PRK07512 L-aspartate oxidase; 95.4 0.044 9.5E-07 46.6 6.2 50 25-79 148-197 (513)
44 PRK09077 L-aspartate oxidase; 95.3 0.071 1.5E-06 45.5 7.3 56 24-80 149-208 (536)
45 PRK08626 fumarate reductase fl 95.3 0.06 1.3E-06 47.3 7.0 50 25-79 169-220 (657)
46 COG0029 NadB Aspartate oxidase 95.3 0.03 6.5E-07 47.7 4.7 56 19-78 139-195 (518)
47 PRK09231 fumarate reductase fl 95.2 0.098 2.1E-06 45.2 7.9 51 25-80 145-197 (582)
48 TIGR01176 fum_red_Fp fumarate 95.2 0.094 2E-06 45.4 7.8 51 25-80 144-196 (580)
49 TIGR00551 nadB L-aspartate oxi 95.2 0.093 2E-06 44.2 7.5 50 26-80 141-190 (488)
50 PRK12834 putative FAD-binding 95.2 0.065 1.4E-06 45.8 6.6 50 26-80 164-228 (549)
51 PRK08205 sdhA succinate dehydr 95.0 0.11 2.5E-06 44.8 7.6 55 24-79 150-206 (583)
52 TIGR01812 sdhA_frdA_Gneg succi 95.0 0.099 2.1E-06 44.8 7.1 50 26-80 141-192 (566)
53 PRK07057 sdhA succinate dehydr 94.9 0.11 2.5E-06 44.9 7.5 52 25-80 159-212 (591)
54 KOG2404|consensus 94.9 0.029 6.2E-07 46.0 3.5 49 27-80 158-207 (477)
55 PRK05945 sdhA succinate dehydr 94.9 0.12 2.7E-06 44.4 7.6 50 25-79 146-197 (575)
56 PRK06481 fumarate reductase fl 94.9 0.11 2.5E-06 44.0 7.2 52 25-81 201-253 (506)
57 PRK08641 sdhA succinate dehydr 94.8 0.12 2.5E-06 44.8 7.2 49 28-80 151-201 (589)
58 PTZ00306 NADH-dependent fumara 94.8 0.12 2.5E-06 48.3 7.6 54 27-81 560-622 (1167)
59 PRK06069 sdhA succinate dehydr 94.7 0.14 3.1E-06 44.0 7.6 50 25-79 149-200 (577)
60 PRK06854 adenylylsulfate reduc 94.7 0.15 3.3E-06 44.3 7.7 50 25-79 144-195 (608)
61 PF01266 DAO: FAD dependent ox 94.6 0.045 9.7E-07 42.6 3.8 55 25-89 158-212 (358)
62 TIGR03378 glycerol3P_GlpB glyc 94.4 0.12 2.5E-06 43.4 6.1 78 25-111 274-353 (419)
63 PRK05329 anaerobic glycerol-3- 94.4 0.23 5E-06 41.5 7.8 81 22-111 267-349 (422)
64 PRK08071 L-aspartate oxidase; 93.8 0.16 3.5E-06 43.1 5.9 49 27-80 142-191 (510)
65 PF06039 Mqo: Malate:quinone o 93.6 0.25 5.5E-06 42.0 6.6 73 19-95 187-259 (488)
66 TIGR02485 CobZ_N-term precorri 93.6 0.25 5.4E-06 40.7 6.5 56 24-84 133-188 (432)
67 PRK07804 L-aspartate oxidase; 93.5 0.28 6E-06 42.0 6.7 51 26-80 156-211 (541)
68 PF13738 Pyr_redox_3: Pyridine 93.3 0.12 2.5E-06 37.6 3.8 62 18-88 86-147 (203)
69 TIGR02061 aprA adenosine phosp 93.1 0.37 8E-06 42.2 7.1 51 27-79 139-191 (614)
70 PRK13800 putative oxidoreducta 93.1 0.34 7.3E-06 44.0 7.1 48 27-79 156-205 (897)
71 TIGR03377 glycerol3P_GlpA glyc 92.8 0.42 9.2E-06 40.4 6.9 59 25-89 139-199 (516)
72 PRK11101 glpA sn-glycerol-3-ph 92.7 0.45 9.7E-06 40.8 6.9 55 25-85 160-216 (546)
73 PLN02464 glycerol-3-phosphate 92.5 0.51 1.1E-05 41.3 7.2 59 25-87 243-303 (627)
74 COG0578 GlpA Glycerol-3-phosph 89.9 0.72 1.6E-05 39.8 5.3 48 25-78 175-224 (532)
75 PRK06185 hypothetical protein; 89.8 1.9 4E-05 34.9 7.5 49 25-78 120-168 (407)
76 PRK05257 malate:quinone oxidor 89.5 2.1 4.5E-05 36.5 7.8 60 26-91 196-257 (494)
77 PF01134 GIDA: Glucose inhibit 88.8 1.8 3.9E-05 36.0 6.8 52 24-84 106-157 (392)
78 PLN02661 Putative thiazole syn 88.5 1.3 2.8E-05 36.5 5.7 52 23-79 182-244 (357)
79 PF12831 FAD_oxidored: FAD dep 88.3 0.14 3.1E-06 42.4 0.0 52 20-76 96-147 (428)
80 PLN02487 zeta-carotene desatur 88.1 2 4.4E-05 37.3 6.9 61 24-85 305-366 (569)
81 PF06100 Strep_67kDa_ant: Stre 87.8 3.3 7.2E-05 35.5 7.9 55 24-78 217-273 (500)
82 TIGR02733 desat_CrtD C-3',4' d 87.7 1.4 3E-05 36.9 5.6 55 25-84 243-299 (492)
83 PRK04176 ribulose-1,5-biphosph 87.6 1.5 3.2E-05 34.1 5.3 50 25-78 115-172 (257)
84 TIGR02730 carot_isom carotene 87.3 1.1 2.5E-05 37.5 4.8 51 24-82 239-289 (493)
85 PRK13339 malate:quinone oxidor 87.3 3.8 8.2E-05 35.1 8.0 62 25-92 196-259 (497)
86 TIGR02732 zeta_caro_desat caro 86.7 1.9 4.1E-05 36.3 5.8 60 25-85 230-290 (474)
87 COG0579 Predicted dehydrogenas 86.6 2.1 4.6E-05 36.0 6.0 58 25-92 164-223 (429)
88 PTZ00383 malate:quinone oxidor 86.0 2.4 5.3E-05 36.2 6.2 53 28-90 231-283 (497)
89 TIGR02352 thiamin_ThiO glycine 85.8 2.3 5.1E-05 33.0 5.7 64 25-99 148-211 (337)
90 PF03486 HI0933_like: HI0933-l 85.2 1.4 3E-05 36.7 4.2 51 24-82 119-169 (409)
91 TIGR03862 flavo_PP4765 unchara 83.7 2.9 6.4E-05 34.5 5.5 54 20-83 92-145 (376)
92 PRK12266 glpD glycerol-3-phosp 83.7 4.5 9.8E-05 34.3 6.8 48 25-78 166-215 (508)
93 TIGR01320 mal_quin_oxido malat 83.5 5.1 0.00011 34.0 7.0 61 25-91 189-251 (483)
94 TIGR02734 crtI_fam phytoene de 82.4 2.5 5.4E-05 35.4 4.7 53 25-85 230-282 (502)
95 TIGR02731 phytoene_desat phyto 82.1 3.3 7E-05 34.2 5.2 48 26-77 225-274 (453)
96 PLN02172 flavin-containing mon 81.3 9.3 0.0002 32.2 7.7 68 18-91 115-185 (461)
97 TIGR01373 soxB sarcosine oxida 81.0 4.3 9.4E-05 32.9 5.5 48 25-80 194-241 (407)
98 TIGR01292 TRX_reduct thioredox 79.9 12 0.00026 28.4 7.5 57 25-87 188-246 (300)
99 PRK13369 glycerol-3-phosphate 79.8 7.9 0.00017 32.7 6.9 48 25-78 166-214 (502)
100 KOG4254|consensus 79.1 2.5 5.4E-05 36.2 3.5 54 19-80 269-322 (561)
101 PRK00711 D-amino acid dehydrog 78.8 6.2 0.00013 31.9 5.8 45 25-78 212-256 (416)
102 PRK07208 hypothetical protein; 78.8 5.7 0.00012 33.0 5.7 49 26-78 230-279 (479)
103 KOG0042|consensus 78.0 1.1 2.4E-05 39.0 1.2 52 24-79 234-287 (680)
104 PRK08401 L-aspartate oxidase; 77.5 9.4 0.0002 32.0 6.6 47 24-80 130-176 (466)
105 PRK06126 hypothetical protein; 76.6 16 0.00035 31.0 7.9 49 25-79 138-188 (545)
106 TIGR00136 gidA glucose-inhibit 76.1 9.1 0.0002 33.8 6.3 54 24-85 107-160 (617)
107 PRK12409 D-amino acid dehydrog 75.5 9.1 0.0002 31.0 5.9 49 24-78 207-257 (410)
108 PRK15317 alkyl hydroperoxide r 75.4 15 0.00032 31.2 7.3 57 25-86 398-456 (517)
109 PRK11728 hydroxyglutarate oxid 74.7 11 0.00024 30.5 6.2 55 25-90 160-214 (393)
110 PLN02985 squalene monooxygenas 74.4 16 0.00034 31.3 7.2 49 24-78 158-207 (514)
111 PRK05192 tRNA uridine 5-carbox 73.3 10 0.00022 33.5 5.9 46 25-79 112-157 (618)
112 COG2081 Predicted flavoprotein 72.7 9.8 0.00021 31.9 5.4 49 24-82 121-170 (408)
113 COG1053 SdhA Succinate dehydro 72.5 4.7 0.0001 35.1 3.7 50 26-79 151-202 (562)
114 PRK10157 putative oxidoreducta 71.8 12 0.00026 30.9 5.8 50 19-77 113-162 (428)
115 PRK07364 2-octaprenyl-6-methox 71.8 18 0.00039 29.2 6.8 49 25-79 133-181 (415)
116 TIGR00292 thiazole biosynthesi 71.7 12 0.00025 29.0 5.4 49 26-77 112-168 (254)
117 PRK12810 gltD glutamate syntha 71.2 15 0.00033 30.7 6.4 59 26-89 341-411 (471)
118 KOG2852|consensus 70.9 8.5 0.00018 31.4 4.5 63 21-90 155-218 (380)
119 TIGR01316 gltA glutamate synth 69.9 22 0.00049 29.6 7.1 61 25-89 320-397 (449)
120 TIGR02053 MerA mercuric reduct 69.8 21 0.00046 29.6 6.9 54 23-82 216-269 (463)
121 PF13434 K_oxygenase: L-lysine 69.0 12 0.00027 30.2 5.2 57 18-76 99-156 (341)
122 COG3634 AhpF Alkyl hydroperoxi 68.1 20 0.00043 30.2 6.1 59 23-86 399-459 (520)
123 TIGR03140 AhpF alkyl hydropero 67.8 31 0.00067 29.3 7.6 55 26-85 400-456 (515)
124 PRK12831 putative oxidoreducta 67.1 25 0.00053 29.6 6.8 56 25-84 329-401 (464)
125 PRK07818 dihydrolipoamide dehy 67.0 31 0.00067 28.7 7.4 60 24-89 223-285 (466)
126 TIGR01377 soxA_mon sarcosine o 66.9 19 0.0004 28.6 5.8 54 25-89 156-209 (380)
127 PRK07233 hypothetical protein; 66.8 11 0.00025 30.3 4.6 50 26-84 210-259 (434)
128 COG1233 Phytoene dehydrogenase 65.9 10 0.00023 32.0 4.3 45 24-77 234-279 (487)
129 PRK10015 oxidoreductase; Provi 65.7 20 0.00044 29.7 6.0 50 19-77 113-162 (429)
130 TIGR01318 gltD_gamma_fam gluta 65.6 28 0.00061 29.2 6.9 60 26-89 332-409 (467)
131 TIGR02032 GG-red-SF geranylger 65.1 29 0.00062 26.1 6.3 47 24-78 101-147 (295)
132 PRK10262 thioredoxin reductase 64.8 45 0.00097 26.0 7.6 56 24-84 195-253 (321)
133 PRK06370 mercuric reductase; V 62.7 63 0.0014 26.8 8.4 54 23-82 221-274 (463)
134 PRK12769 putative oxidoreducta 61.9 33 0.00072 30.1 6.8 61 25-89 517-595 (654)
135 PRK11259 solA N-methyltryptoph 61.4 29 0.00063 27.4 6.0 49 25-84 160-208 (376)
136 COG3573 Predicted oxidoreducta 61.1 22 0.00047 29.8 5.2 59 23-86 162-235 (552)
137 TIGR01350 lipoamide_DH dihydro 59.6 51 0.0011 27.2 7.3 52 24-82 221-272 (461)
138 TIGR03197 MnmC_Cterm tRNA U-34 59.1 35 0.00076 27.4 6.1 44 25-78 146-189 (381)
139 PRK06416 dihydrolipoamide dehy 58.9 57 0.0012 27.0 7.5 55 24-84 223-277 (462)
140 TIGR03385 CoA_CoA_reduc CoA-di 58.4 29 0.00062 28.4 5.6 55 25-89 55-111 (427)
141 PRK12809 putative oxidoreducta 57.9 41 0.0009 29.5 6.7 50 26-79 501-567 (639)
142 COG3486 IucD Lysine/ornithine 57.9 43 0.00093 28.4 6.4 54 26-84 290-346 (436)
143 COG0644 FixC Dehydrogenases (f 57.8 29 0.00063 28.2 5.5 52 18-77 99-150 (396)
144 PRK11445 putative oxidoreducta 56.7 54 0.0012 26.1 6.8 49 26-80 110-158 (351)
145 KOG1298|consensus 56.6 15 0.00033 31.1 3.6 50 23-78 157-207 (509)
146 PRK06327 dihydrolipoamide dehy 55.4 60 0.0013 27.1 7.1 55 24-84 234-289 (475)
147 TIGR00275 flavoprotein, HI0933 54.8 44 0.00096 27.4 6.1 49 24-82 115-163 (400)
148 PRK06183 mhpA 3-(3-hydroxyphen 54.1 76 0.0016 27.0 7.6 50 26-81 126-176 (538)
149 PLN02612 phytoene desaturase 53.6 25 0.00053 30.4 4.6 45 26-77 320-364 (567)
150 PRK09564 coenzyme A disulfide 53.5 40 0.00086 27.6 5.7 57 24-90 201-257 (444)
151 PF13434 K_oxygenase: L-lysine 53.4 47 0.001 26.8 6.0 47 25-76 290-338 (341)
152 PRK13512 coenzyme A disulfide 53.4 44 0.00095 27.6 5.9 46 25-78 69-116 (438)
153 COG0445 GidA Flavin-dependent 53.1 9.5 0.00021 33.4 2.0 53 24-84 111-163 (621)
154 PF01494 FAD_binding_3: FAD bi 51.8 40 0.00086 25.9 5.2 47 26-77 123-170 (356)
155 PF07992 Pyr_redox_2: Pyridine 51.8 44 0.00096 23.7 5.1 49 25-78 69-121 (201)
156 PRK07045 putative monooxygenas 51.8 59 0.0013 26.0 6.3 46 25-77 118-163 (388)
157 PRK08243 4-hydroxybenzoate 3-m 51.5 61 0.0013 26.1 6.4 48 25-77 114-161 (392)
158 TIGR01372 soxA sarcosine oxida 51.1 59 0.0013 30.2 6.8 60 25-90 362-422 (985)
159 KOG2311|consensus 50.8 21 0.00045 31.2 3.6 55 25-84 136-191 (679)
160 PRK06115 dihydrolipoamide dehy 50.7 77 0.0017 26.4 7.0 57 22-84 223-281 (466)
161 COG2072 TrkA Predicted flavopr 49.1 61 0.0013 27.2 6.1 57 27-88 97-153 (443)
162 PF00743 FMO-like: Flavin-bind 49.0 25 0.00055 30.3 4.0 65 18-84 88-155 (531)
163 COG3075 GlpB Anaerobic glycero 48.3 20 0.00043 29.8 3.0 50 26-81 270-319 (421)
164 PF00070 Pyr_redox: Pyridine n 48.0 37 0.0008 20.9 3.7 33 20-57 46-78 (80)
165 COG0654 UbiH 2-polyprenyl-6-me 47.8 65 0.0014 26.0 6.0 45 24-76 115-159 (387)
166 PRK04965 NADH:flavorubredoxin 47.6 71 0.0015 25.6 6.2 58 24-90 193-250 (377)
167 PRK06912 acoL dihydrolipoamide 47.6 91 0.002 25.9 7.0 51 24-82 221-271 (458)
168 TIGR03329 Phn_aa_oxid putative 46.1 51 0.0011 27.4 5.3 44 24-78 193-236 (460)
169 PRK11749 dihydropyrimidine deh 46.0 75 0.0016 26.4 6.2 55 25-84 322-392 (457)
170 PRK09564 coenzyme A disulfide 45.8 73 0.0016 26.1 6.1 46 25-78 67-114 (444)
171 PRK08244 hypothetical protein; 45.5 96 0.0021 25.9 6.8 48 25-79 111-159 (493)
172 PRK05976 dihydrolipoamide dehy 45.4 1.1E+02 0.0024 25.5 7.2 56 24-84 231-286 (472)
173 PRK12770 putative glutamate sy 44.4 82 0.0018 25.1 6.0 59 25-89 221-297 (352)
174 TIGR01988 Ubi-OHases Ubiquinon 44.3 90 0.002 24.6 6.3 47 23-78 116-162 (385)
175 PRK08132 FAD-dependent oxidore 43.7 1.1E+02 0.0025 25.9 7.1 49 25-79 137-185 (547)
176 TIGR03364 HpnW_proposed FAD de 43.7 59 0.0013 25.7 5.1 38 27-78 159-196 (365)
177 PF01593 Amino_oxidase: Flavin 43.5 49 0.0011 25.8 4.6 45 28-81 223-267 (450)
178 PRK06184 hypothetical protein; 43.3 1E+02 0.0022 25.9 6.7 49 25-79 120-168 (502)
179 TIGR01438 TGR thioredoxin and 42.9 1E+02 0.0022 26.0 6.7 57 23-85 229-285 (484)
180 PRK14989 nitrite reductase sub 41.5 92 0.002 28.6 6.4 62 22-90 195-256 (847)
181 PRK12775 putative trifunctiona 41.4 1.1E+02 0.0023 28.8 6.9 56 25-84 620-691 (1006)
182 TIGR02374 nitri_red_nirB nitri 40.6 84 0.0018 28.4 6.0 57 24-89 192-248 (785)
183 PRK05732 2-octaprenyl-6-methox 40.3 1E+02 0.0022 24.5 6.0 45 25-78 124-168 (395)
184 TIGR01984 UbiH 2-polyprenyl-6- 40.1 1.2E+02 0.0026 24.0 6.4 43 27-78 119-161 (382)
185 PRK12778 putative bifunctional 39.7 1E+02 0.0023 27.5 6.5 55 25-83 619-690 (752)
186 PRK12771 putative glutamate sy 39.5 1.1E+02 0.0023 26.3 6.3 59 26-89 317-391 (564)
187 PRK08773 2-octaprenyl-3-methyl 36.9 1.1E+02 0.0024 24.5 5.8 45 25-78 124-168 (392)
188 PRK06467 dihydrolipoamide dehy 36.5 1.8E+02 0.0038 24.4 7.0 50 29-84 229-279 (471)
189 COG4032 Predicted thiamine-pyr 35.9 11 0.00025 27.3 -0.1 25 71-95 55-83 (172)
190 COG1252 Ndh NADH dehydrogenase 35.7 1.1E+02 0.0024 25.7 5.6 53 24-88 219-271 (405)
191 PRK08163 salicylate hydroxylas 34.6 1.3E+02 0.0027 24.1 5.7 45 25-78 121-165 (396)
192 PRK14727 putative mercuric red 34.4 1.6E+02 0.0035 24.6 6.5 52 23-84 237-288 (479)
193 PRK09754 phenylpropionate diox 34.3 1.3E+02 0.0028 24.4 5.8 57 24-90 196-252 (396)
194 PRK13984 putative oxidoreducta 34.3 1.4E+02 0.0031 25.8 6.3 55 26-85 474-544 (604)
195 PF07897 DUF1675: Protein of u 33.7 81 0.0017 25.3 4.3 44 50-98 237-282 (284)
196 PRK07538 hypothetical protein; 33.4 1.4E+02 0.0031 24.1 6.0 49 27-80 117-165 (413)
197 PRK07190 hypothetical protein; 33.2 1.4E+02 0.0031 25.2 6.0 45 25-78 120-164 (487)
198 PTZ00363 rab-GDP dissociation 33.0 1.4E+02 0.0029 25.2 5.8 29 26-57 244-272 (443)
199 PF04820 Trp_halogenase: Trypt 33.0 83 0.0018 26.4 4.5 53 17-77 157-209 (454)
200 TIGR03467 HpnE squalene-associ 31.0 66 0.0014 25.6 3.5 51 26-84 209-259 (419)
201 COG0492 TrxB Thioredoxin reduc 30.9 2.8E+02 0.006 22.1 7.7 63 20-89 185-248 (305)
202 PRK01747 mnmC bifunctional tRN 30.7 1.4E+02 0.003 26.2 5.7 47 28-84 421-467 (662)
203 TIGR03385 CoA_CoA_reduc CoA-di 30.5 1.6E+02 0.0035 23.9 5.8 57 23-90 188-244 (427)
204 PRK08010 pyridine nucleotide-d 30.2 2E+02 0.0044 23.6 6.4 52 23-84 208-259 (441)
205 TIGR02028 ChlP geranylgeranyl 30.2 2E+02 0.0043 23.4 6.3 54 20-77 99-158 (398)
206 TIGR02023 BchP-ChlP geranylger 30.1 2.2E+02 0.0049 22.8 6.5 46 25-77 103-153 (388)
207 COG2509 Uncharacterized FAD-de 30.0 1.4E+02 0.0031 25.7 5.4 44 26-77 185-228 (486)
208 PRK08020 ubiF 2-octaprenyl-3-m 29.1 2.2E+02 0.0049 22.6 6.3 44 25-77 124-167 (391)
209 PRK06475 salicylate hydroxylas 29.0 1.8E+02 0.0038 23.5 5.8 18 26-43 120-137 (400)
210 PRK06847 hypothetical protein; 29.0 2E+02 0.0043 22.7 5.9 49 25-82 118-166 (375)
211 PLN02576 protoporphyrinogen ox 28.8 1.1E+02 0.0024 25.4 4.6 50 29-84 252-302 (496)
212 PRK07608 ubiquinone biosynthes 28.7 1.9E+02 0.0042 22.9 5.9 46 23-78 121-166 (388)
213 PRK15317 alkyl hydroperoxide r 28.6 2E+02 0.0043 24.4 6.1 54 20-84 272-325 (517)
214 TIGR03143 AhpF_homolog putativ 28.2 2.6E+02 0.0057 24.0 6.9 56 25-85 190-252 (555)
215 PRK06834 hypothetical protein; 28.1 1.9E+02 0.0042 24.4 6.0 46 25-79 111-156 (488)
216 PRK06116 glutathione reductase 27.4 2.4E+02 0.0053 23.2 6.4 51 24-82 218-268 (450)
217 PRK09126 hypothetical protein; 27.0 2.9E+02 0.0063 21.9 6.6 44 25-77 122-165 (392)
218 PRK05249 soluble pyridine nucl 26.4 2.3E+02 0.005 23.3 6.1 52 24-84 226-277 (461)
219 PTZ00367 squalene epoxidase; P 25.8 2.5E+02 0.0055 24.4 6.4 33 26-59 146-178 (567)
220 PRK09897 hypothetical protein; 25.7 2.2E+02 0.0048 24.7 6.0 42 29-78 124-165 (534)
221 PRK07251 pyridine nucleotide-d 25.4 2.9E+02 0.0063 22.6 6.5 50 24-83 208-257 (438)
222 PRK14694 putative mercuric red 25.3 2.9E+02 0.0064 22.9 6.5 51 24-84 228-278 (468)
223 PRK07333 2-octaprenyl-6-methox 25.2 2.6E+02 0.0057 22.2 6.1 45 25-78 122-166 (403)
224 PRK13512 coenzyme A disulfide 24.9 2.2E+02 0.0049 23.4 5.7 55 23-90 198-252 (438)
225 PRK08849 2-octaprenyl-3-methyl 24.1 2.9E+02 0.0062 22.1 6.1 44 25-77 122-165 (384)
226 PRK07845 flavoprotein disulfid 23.5 3.3E+02 0.0071 22.7 6.5 60 22-90 226-287 (466)
227 PF09556 RE_HaeIII: HaeIII res 23.4 53 0.0012 26.4 1.6 70 41-132 80-153 (300)
228 PTZ00058 glutathione reductase 23.3 2.3E+02 0.005 24.6 5.7 55 24-85 288-342 (561)
229 PRK08850 2-octaprenyl-6-methox 23.3 3.4E+02 0.0074 21.8 6.4 44 25-77 123-166 (405)
230 TIGR01421 gluta_reduc_1 glutat 23.0 3.3E+02 0.0071 22.6 6.4 54 24-84 217-270 (450)
231 TIGR01989 COQ6 Ubiquinone bios 22.6 3.1E+02 0.0068 22.5 6.2 47 28-78 134-182 (437)
232 PF01946 Thi4: Thi4 family; PD 22.4 3.8E+02 0.0082 20.9 7.7 49 26-78 108-164 (230)
233 TIGR01423 trypano_reduc trypan 22.1 3E+02 0.0066 23.3 6.1 54 23-84 240-293 (486)
234 TIGR01372 soxA sarcosine oxida 21.5 4.5E+02 0.0097 24.5 7.4 49 26-80 228-287 (985)
235 PRK12814 putative NADPH-depend 20.8 4E+02 0.0088 23.5 6.8 60 26-89 373-447 (652)
236 PRK13748 putative mercuric red 20.8 3.7E+02 0.0079 22.8 6.4 51 24-84 320-370 (561)
237 COG1249 Lpd Pyruvate/2-oxoglut 20.6 3.9E+02 0.0085 22.7 6.4 62 25-93 225-288 (454)
238 PRK06292 dihydrolipoamide dehy 20.5 4.8E+02 0.01 21.4 7.1 51 25-83 221-272 (460)
239 KOG1336|consensus 20.5 3.1E+02 0.0067 23.7 5.7 57 28-98 141-197 (478)
240 PRK12779 putative bifunctional 20.5 4.6E+02 0.01 24.5 7.2 54 26-82 496-565 (944)
No 1
>KOG1238|consensus
Probab=99.80 E-value=7.8e-20 Score=155.18 Aligned_cols=92 Identities=51% Similarity=0.768 Sum_probs=84.5
Q ss_pred cccccccCCeeechhhhhhhhhhc-CCCeEEEccceEEEEEeccCCCCCeEEEEEEEeC-CeEEEEEeceEEEecCCccc
Q psy8943 2 IAQGTIRRGSRCSTSKAFLRPIRL-RKNLHIAMETQALRLLFDKSGPVPKAVGIEILRD-GRKHIIRAKKEIISSAGAIN 79 (134)
Q Consensus 2 ~~~~~~~~g~R~sa~~~~l~~~~~-~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~-g~~~~~~a~~~vIlaaGai~ 79 (134)
+.+.++++|.|.|+..+|++|+.. |+||++..++.|+||++|.. +.++.||++..+ ++.++++++||||||||||+
T Consensus 241 ~l~~t~~~g~R~s~~~a~l~~~~~~R~NL~~~~~~~vtrvl~D~~--~~~a~gv~~~~~~~~~~~v~a~kEVILSAGAi~ 318 (623)
T KOG1238|consen 241 LLQYTIRNGIRVSLAKAYLKPIRLTRPNLHISRNAAVTRVLIDPA--GKRAKGVEFVRDGGKEHTVKARKEVILSAGAIN 318 (623)
T ss_pred hhhccccCCEEEEehhhhhhhhhccCccccccccceEEEEEEcCC--CceEEEEEEEecCceeeeecccceEEEeccccC
Confidence 568899999999999999999876 89999999999999999952 348999999998 89999999999999999999
Q ss_pred CCchhhhcccccccce
Q psy8943 80 SPQLLMVSGGSSVLNA 95 (134)
Q Consensus 80 tP~lLl~SGig~~~n~ 95 (134)
||||||+|||||+.+|
T Consensus 319 SPQLLMLSGIGP~~~L 334 (623)
T KOG1238|consen 319 SPQLLMLSGIGPADHL 334 (623)
T ss_pred CHHHHHHcCCCcHHHH
Confidence 9999999999999754
No 2
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=99.78 E-value=1.5e-19 Score=140.88 Aligned_cols=87 Identities=33% Similarity=0.521 Sum_probs=73.0
Q ss_pred cccCCeeechhhhhhhhhhcCCCeEEEccceEEEEEeccCCCCCeEEEEEEEeC-Ce-EEEEEeceEEEecCCcccCCch
Q psy8943 6 TIRRGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRD-GR-KHIIRAKKEIISSAGAINSPQL 83 (134)
Q Consensus 6 ~~~~g~R~sa~~~~l~~~~~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~-g~-~~~~~a~~~vIlaaGai~tP~l 83 (134)
.+.+|+|+|+..+||.++.+++|++|+++++|+||+++. ++++|+||++.+. +. .+.+.+.++||||||+|+||+|
T Consensus 185 ~~~~g~r~s~~~~~L~~a~~~~n~~l~~~~~V~~i~~~~--~~~~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai~Tp~L 262 (296)
T PF00732_consen 185 NCPNGARSSAATTYLPPALKRPNLTLLTNARVTRIIFDG--DGGRATGVEYVDNDGGVQRRIVAAKEVILAAGAIGTPRL 262 (296)
T ss_dssp CECTTCBBHHHHHHHHHHTTTTTEEEEESEEEEEEEEET--TSTEEEEEEEEETTTSEEEEEEEEEEEEE-SHHHHHHHH
T ss_pred cccchhceehhhcccchhhccCCccEEcCcEEEEEeeec--cccceeeeeeeecCCcceeeeccceeEEeccCCCCChhh
Confidence 488999999999999999889999999999999999863 3469999999983 33 3555555999999999999999
Q ss_pred hhhcccccccc
Q psy8943 84 LMVSGGSSVLN 94 (134)
Q Consensus 84 Ll~SGig~~~n 94 (134)
||+||||+..+
T Consensus 263 Ll~SGiG~~~~ 273 (296)
T PF00732_consen 263 LLRSGIGPKDH 273 (296)
T ss_dssp HHHTTEE-HHH
T ss_pred hcccccccHHH
Confidence 99999987653
No 3
>PRK02106 choline dehydrogenase; Validated
Probab=99.76 E-value=1.4e-18 Score=147.31 Aligned_cols=86 Identities=43% Similarity=0.633 Sum_probs=75.8
Q ss_pred ccccccCCeeechhhhhhhhhhcCCCeEEEccceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEeceEEEecCCcccCCc
Q psy8943 3 AQGTIRRGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQ 82 (134)
Q Consensus 3 ~~~~~~~g~R~sa~~~~l~~~~~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~g~~~~~~a~~~vIlaaGai~tP~ 82 (134)
++.+|.+|.|+++..+||.++..++|++|++++.|+||+++ +++|+||++.+.+....+.+.++||||||+|+||+
T Consensus 190 ~~~~~~~g~R~s~~~~~l~~a~~~~nl~i~~~a~V~rI~~~----~~~a~GV~~~~~~~~~~~~~ak~VILaaGai~TP~ 265 (560)
T PRK02106 190 MDRTVTNGRRWSAARAYLDPALKRPNLTIVTHALTDRILFE----GKRAVGVEYERGGGRETARARREVILSAGAINSPQ 265 (560)
T ss_pred EeeecCCCEEEChHHHhhccccCCCCcEEEcCCEEEEEEEe----CCeEEEEEEEeCCcEEEEEeeeeEEEccCCCCCHH
Confidence 45567899999999999998888999999999999999997 35899999988655555666699999999999999
Q ss_pred hhhhcccccc
Q psy8943 83 LLMVSGGSSV 92 (134)
Q Consensus 83 lLl~SGig~~ 92 (134)
|||+||||+.
T Consensus 266 LLl~SGIG~~ 275 (560)
T PRK02106 266 LLQLSGIGPA 275 (560)
T ss_pred HHhhcCCCCh
Confidence 9999999986
No 4
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=99.76 E-value=2e-18 Score=145.48 Aligned_cols=86 Identities=40% Similarity=0.602 Sum_probs=75.5
Q ss_pred ccccccCCeeechhhhhhhhhhcCCCeEEEccceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEeceEEEecCCcccCCc
Q psy8943 3 AQGTIRRGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQ 82 (134)
Q Consensus 3 ~~~~~~~g~R~sa~~~~l~~~~~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~g~~~~~~a~~~vIlaaGai~tP~ 82 (134)
++.++.+|+|+++..+|+.++.+++|++|++++.|+||+++ +++|+||++.+.+....+.+.++||||||+++||+
T Consensus 183 ~~~~~~~g~r~s~~~~~l~~a~~r~nl~i~~~~~V~rI~~~----~~ra~GV~~~~~~~~~~~~~ak~VIlaAGai~SP~ 258 (532)
T TIGR01810 183 MDSTVHNGRRVSAARAYLHPAMKRPNLEVQTRAFVTKINFE----GNRATGVEFKKGGRKEHTEANKEVILSAGAINSPQ 258 (532)
T ss_pred EEEEcCCCEEEcHHHHHhhhhccCCCeEEEeCCEEEEEEec----CCeEEEEEEEeCCcEEEEEEeeeEEEccCCCCCHH
Confidence 34567789999999999988878999999999999999997 35899999987665556666699999999999999
Q ss_pred hhhhcccccc
Q psy8943 83 LLMVSGGSSV 92 (134)
Q Consensus 83 lLl~SGig~~ 92 (134)
||++||||+.
T Consensus 259 LLl~SGIG~~ 268 (532)
T TIGR01810 259 LLQLSGIGDA 268 (532)
T ss_pred HHHhcCCCCH
Confidence 9999999986
No 5
>PLN02785 Protein HOTHEAD
Probab=99.61 E-value=1.6e-15 Score=129.86 Aligned_cols=83 Identities=33% Similarity=0.537 Sum_probs=67.7
Q ss_pred cCCeeechhhhhhhhhhcCCCeEEEccceEEEEEeccCCCCCeEEEEEEEe-CCeEEEE----EeceEEEecCCcccCCc
Q psy8943 8 RRGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILR-DGRKHII----RAKKEIISSAGAINSPQ 82 (134)
Q Consensus 8 ~~g~R~sa~~~~l~~~~~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~-~g~~~~~----~a~~~vIlaaGai~tP~ 82 (134)
..|.|++++. ++ +...++||+|+++++|+||+++.++..++|+||+|.+ +|..+++ +++++||||||+|+||+
T Consensus 216 ~~g~R~saa~-l~-~~~~~~nl~Vl~~a~V~rIl~~~~~~~~ra~GV~~~~~~g~~~~~~~~~~~~~eVILsAGai~sP~ 293 (587)
T PLN02785 216 EFGRRHTAAE-LL-AAGNPNKLRVLLHATVQKIVFDTSGKRPRATGVIFKDENGNQHQAFLSNNKGSEIILSAGAIGSPQ 293 (587)
T ss_pred CCCEEcCHHH-HH-hhcCCCCeEEEeCCEEEEEEEcCCCCCceEEEEEEEECCCceEEEEeecccCceEEecccccCCHH
Confidence 4688988875 44 5667899999999999999998532234899999987 5655443 25689999999999999
Q ss_pred hhhhcccccc
Q psy8943 83 LLMVSGGSSV 92 (134)
Q Consensus 83 lLl~SGig~~ 92 (134)
|||+||||+.
T Consensus 294 lL~~SGIGp~ 303 (587)
T PLN02785 294 MLLLSGIGPK 303 (587)
T ss_pred HHHHcCCCCH
Confidence 9999999998
No 6
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=99.61 E-value=1.8e-15 Score=128.42 Aligned_cols=88 Identities=34% Similarity=0.467 Sum_probs=76.5
Q ss_pred cccccccCCeeechhhhhhhhhhcCCCeEEEccceEEEEEeccCCCCCeEEEEEEEeCCe--EEEEEeceEEEecCCccc
Q psy8943 2 IAQGTIRRGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGR--KHIIRAKKEIISSAGAIN 79 (134)
Q Consensus 2 ~~~~~~~~g~R~sa~~~~l~~~~~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~g~--~~~~~a~~~vIlaaGai~ 79 (134)
.++.++.+|.|.++...||+++.+++|++|++++.|++|+++ ++++++|++...+. .....+.++||||||+|+
T Consensus 191 ~~~~~~~~g~r~sa~~a~l~~a~~~~nl~v~t~a~v~ri~~~----~~r~~gv~~~~~~~~~~~~~~a~~~viL~AGai~ 266 (542)
T COG2303 191 PYCVTICNGRRWSAARAYLKPALKRPNLTLLTGARVRRILLE----GDRAVGVEVEIGDGGTIETAVAAREVVLAAGAIN 266 (542)
T ss_pred cceeeccCCeEeechhhcchhHhcCCceEEecCCEEEEEEEE----CCeeEEEEEEeCCCCceEEEecCceEEEeccccC
Confidence 466777799999999999999999999999999999999998 46999999987432 345556689999999999
Q ss_pred CCchhhhccccccc
Q psy8943 80 SPQLLMVSGGSSVL 93 (134)
Q Consensus 80 tP~lLl~SGig~~~ 93 (134)
||+|||+||||+..
T Consensus 267 Sp~LL~~Sgig~~~ 280 (542)
T COG2303 267 SPKLLLLSGIGPAD 280 (542)
T ss_pred CHHHHHhcCCCchh
Confidence 99999999999754
No 7
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=99.40 E-value=8.2e-13 Score=112.28 Aligned_cols=82 Identities=15% Similarity=0.219 Sum_probs=67.1
Q ss_pred cCCeeechhhhhhhhhh----cCCCeEEEccceEEEEEeccCCCCCeEEEEEEEe--CCeEEEEEeceEEEecCCcccCC
Q psy8943 8 RRGSRCSTSKAFLRPIR----LRKNLHIAMETQALRLLFDKSGPVPKAVGIEILR--DGRKHIIRAKKEIISSAGAINSP 81 (134)
Q Consensus 8 ~~g~R~sa~~~~l~~~~----~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~--~g~~~~~~a~~~vIlaaGai~tP 81 (134)
..+.|+|+..+.+..+. .++|++|++++.|++|++++. .+++|++|.|.+ +++.++++| +.||||||+|+||
T Consensus 204 ~~~ak~s~~~t~~~~~~~~~~~~~n~~l~~~a~v~~i~~d~~-~~~~v~~v~~~d~~~g~~~~v~A-~~vVLAagaIetp 281 (544)
T TIGR02462 204 PTYVEWHSADTVFDLQPNDDAPSERFTLLTNHRCTRLVRNET-NESEIEAALVRDLLSGDRFEIKA-DVYVLACGAVHNP 281 (544)
T ss_pred CccceecCCccchhhhhhhhccCCCEEEEcCCEEEEEEeCCC-CCceeEEEEEEECCCCcEEEEEC-CEEEEccCchhhH
Confidence 45678887656665544 488999999999999999843 114899999987 578888999 6999999999999
Q ss_pred chhhhccccc
Q psy8943 82 QLLMVSGGSS 91 (134)
Q Consensus 82 ~lLl~SGig~ 91 (134)
||||+|+++.
T Consensus 282 RLLL~S~~~~ 291 (544)
T TIGR02462 282 QILVNSGFGQ 291 (544)
T ss_pred HHHHhCCCCC
Confidence 9999997763
No 8
>KOG1238|consensus
Probab=99.13 E-value=1.9e-11 Score=104.46 Aligned_cols=46 Identities=72% Similarity=1.329 Sum_probs=43.8
Q ss_pred cccccccceeEEecCCCCChhHHHhcCCCCCCccccchhHhhcCcC
Q psy8943 87 SGGSSVLNAMIYVRGNKNDYDQWERLGNSGWGYKDVLPYFKKSEDN 132 (134)
Q Consensus 87 SGig~~~n~~~~~~g~~~d~~~w~~~~~~~w~~~~~~p~~~~~~~~ 132 (134)
-|+++..|+|+|.||++.|||+|++.|++||+|++++|||+++|+.
T Consensus 140 LGGsS~iN~m~Y~RG~r~Dyd~W~~~gnpgW~y~~vl~yf~k~E~~ 185 (623)
T KOG1238|consen 140 LGGSSVLNAMFYVRGNRRDYDRWAAEGNPGWSYDEVLPYFKKSEDK 185 (623)
T ss_pred ecccccccceEEecCCccchHHHHHhcCCCCCHHHHHHHHHHHhhc
Confidence 3999999999999999999999999999999999999999999865
No 9
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=98.66 E-value=8.2e-09 Score=87.28 Aligned_cols=46 Identities=50% Similarity=1.036 Sum_probs=43.0
Q ss_pred cccccccceeEEecCCCCChhHHHh-cCCCCCCccccchhHhhcCcC
Q psy8943 87 SGGSSVLNAMIYVRGNKNDYDQWER-LGNSGWGYKDVLPYFKKSEDN 132 (134)
Q Consensus 87 SGig~~~n~~~~~~g~~~d~~~w~~-~~~~~w~~~~~~p~~~~~~~~ 132 (134)
-|+++..|.|+|.|+++.||+.|++ .|+++|+|++++|||+++|++
T Consensus 82 lGGss~in~~~~~R~~~~d~~~w~~~~g~~~W~~~~l~py~~~~E~~ 128 (532)
T TIGR01810 82 LGGSSSINGMIYQRGNPMDYEKWAKPEGMESWDYADCLPYYKRLETT 128 (532)
T ss_pred cCCCCCEeeeEEecCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHhcc
Confidence 3999999999999999999999997 688999999999999999965
No 10
>PRK02106 choline dehydrogenase; Validated
Probab=98.56 E-value=2.2e-08 Score=85.23 Aligned_cols=46 Identities=59% Similarity=1.186 Sum_probs=43.0
Q ss_pred cccccccceeEEecCCCCChhHHHhc-CCCCCCccccchhHhhcCcC
Q psy8943 87 SGGSSVLNAMIYVRGNKNDYDQWERL-GNSGWGYKDVLPYFKKSEDN 132 (134)
Q Consensus 87 SGig~~~n~~~~~~g~~~d~~~w~~~-~~~~w~~~~~~p~~~~~~~~ 132 (134)
-|+++..|.|.|.|+++.||+.|..+ |++||+|++++|||+++|++
T Consensus 88 lGGsS~iN~~~~~R~~~~Dfd~w~~~~g~~~Ws~~~l~py~~k~E~~ 134 (560)
T PRK02106 88 LGGSSSINGMVYIRGNAMDYDNWAELPGLEGWSYADCLPYFKKAETR 134 (560)
T ss_pred cCCCCCccceEEecCCHHHHHHHHhhcCCCCCCHHHHHHHHHHhhcc
Confidence 39999999999999999999999986 88999999999999999964
No 11
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=98.37 E-value=1.1e-07 Score=81.03 Aligned_cols=45 Identities=58% Similarity=1.213 Sum_probs=41.4
Q ss_pred ccccccceeEEecCCCCChhHHHh-cCCCCCCccccchhHhhcCcC
Q psy8943 88 GGSSVLNAMIYVRGNKNDYDQWER-LGNSGWGYKDVLPYFKKSEDN 132 (134)
Q Consensus 88 Gig~~~n~~~~~~g~~~d~~~w~~-~~~~~w~~~~~~p~~~~~~~~ 132 (134)
|+++..|-|.|.|+++.||+.|.. .|+++|.|++++|||+++|++
T Consensus 88 GGsS~ing~~~~R~~~~Df~~w~~~~G~~~W~y~d~lPyf~~aE~~ 133 (542)
T COG2303 88 GGSSSINGMVYVRGHPEDFDAWAQESGAPGWPYDDVLPYFKRAEDL 133 (542)
T ss_pred cchhhhccceeecCCHHHHHHHHhhcCCCCCCccccHHHHHHHHhh
Confidence 777889999999999999999986 478999999999999999963
No 12
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=98.13 E-value=3.8e-07 Score=71.05 Aligned_cols=45 Identities=42% Similarity=0.970 Sum_probs=36.9
Q ss_pred ccccccceeEEecCCCCChhHHHhc-CCCCCCccccchhHhhcCcC
Q psy8943 88 GGSSVLNAMIYVRGNKNDYDQWERL-GNSGWGYKDVLPYFKKSEDN 132 (134)
Q Consensus 88 Gig~~~n~~~~~~g~~~d~~~w~~~-~~~~w~~~~~~p~~~~~~~~ 132 (134)
|+++..|.|.+.|+++.||++|... +.++|+|+++.|||+++|++
T Consensus 81 GGsS~in~~~~~R~~~~df~~w~~~~g~~~w~~~~l~~~~~~~e~~ 126 (296)
T PF00732_consen 81 GGSSAINGGVYFRPSPSDFDEWAREFGADGWSWDDLEPYYDKAETF 126 (296)
T ss_dssp TGGGGTS--BE-B--HHHHHHHHHTTTCTTGSHHHHHHHHHHHEEE
T ss_pred CCcccccccccccCCcccchhhhhcccccccchhhHHHHHHHHHhh
Confidence 9999999999999999999999975 88899999999999999943
No 13
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.57 E-value=0.00031 Score=60.54 Aligned_cols=58 Identities=22% Similarity=0.340 Sum_probs=48.1
Q ss_pred hhhhhcCCCeEEEccceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEeceEEEecCCcccC
Q psy8943 20 LRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINS 80 (134)
Q Consensus 20 l~~~~~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~g~~~~~~a~~~vIlaaGai~t 80 (134)
|...+...+++|++++.|++|+.++ +++|+||.+..++....+++++-||||+|++..
T Consensus 219 l~~~~~~~gv~i~~~~~~~~Li~d~---~g~V~Gv~~~~~~~~~~i~a~~aVilAtGGf~~ 276 (584)
T PRK12835 219 LRLALKDAGVPLWLDSPMTELITDP---DGAVVGAVVEREGRTLRIGARRGVILATGGFDH 276 (584)
T ss_pred HHHHHHhCCceEEeCCEEEEEEECC---CCcEEEEEEEeCCcEEEEEeceeEEEecCcccC
Confidence 3344567789999999999999862 468999998878888889996679999999885
No 14
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=97.52 E-value=0.00044 Score=58.56 Aligned_cols=56 Identities=20% Similarity=0.397 Sum_probs=46.3
Q ss_pred hhhcCCCeEEEccceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEeceEEEecCCcccCC
Q psy8943 22 PIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSP 81 (134)
Q Consensus 22 ~~~~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~g~~~~~~a~~~vIlaaGai~tP 81 (134)
.+.+.++++|++++.|++|+.+ +++|+||.+..++....+++++.||||+|.++.-
T Consensus 182 ~~~~~~gv~i~~~t~~~~Li~~----~g~v~Gv~~~~~g~~~~i~A~k~VIlAtGG~~~n 237 (513)
T PRK12837 182 ALARFPNARLRLNTPLVELVVE----DGRVVGAVVERGGERRRVRARRGVLLAAGGFEQN 237 (513)
T ss_pred HHHhCCCCEEEeCCEEEEEEec----CCEEEEEEEEECCcEEEEEeCceEEEeCCCccCC
Confidence 3344568999999999999876 3689999987778888899977899999998653
No 15
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.33 E-value=0.00093 Score=57.24 Aligned_cols=57 Identities=18% Similarity=0.381 Sum_probs=46.8
Q ss_pred hcCCCeEEEccceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEeceEEEecCCcccCCchh
Q psy8943 24 RLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLL 84 (134)
Q Consensus 24 ~~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~g~~~~~~a~~~vIlaaGai~tP~lL 84 (134)
+.+.+++|++++.|++|+.+ +++|+||.+..++....+.+++.||||+|++..-.-|
T Consensus 218 ~~~~gv~v~~~t~v~~l~~~----~g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~~~n~~m 274 (557)
T PRK07843 218 LQRAGVPVLLNTPLTDLYVE----DGRVTGVHAAESGEPQLIRARRGVILASGGFEHNEQM 274 (557)
T ss_pred HHcCCCEEEeCCEEEEEEEe----CCEEEEEEEEeCCcEEEEEeceeEEEccCCcCcCHHH
Confidence 45678999999999999876 3589999987777778899966799999998874433
No 16
>PLN02785 Protein HOTHEAD
Probab=97.19 E-value=0.00016 Score=62.47 Aligned_cols=40 Identities=28% Similarity=0.426 Sum_probs=36.1
Q ss_pred cccccccceeEEecCCCCChhHHHhcCCCCCCccccchhHhhcCcC
Q psy8943 87 SGGSSVLNAMIYVRGNKNDYDQWERLGNSGWGYKDVLPYFKKSEDN 132 (134)
Q Consensus 87 SGig~~~n~~~~~~g~~~d~~~w~~~~~~~w~~~~~~p~~~~~~~~ 132 (134)
-|+++..|.|.|.||++.||++ .||+|+++.|||++.|+.
T Consensus 131 LGGsS~iN~~~y~Rg~~~d~~~------~GW~~~~~~~~~~~~e~~ 170 (587)
T PLN02785 131 LGGGTCINAGFYSRASTRFIQK------AGWDAKLVNESYPWVERQ 170 (587)
T ss_pred ecchhhhcCeEEEeCCHHHhcc------CCCCcccccchHHHHhcc
Confidence 4999999999999999999964 689999999999999863
No 17
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.18 E-value=0.0017 Score=55.69 Aligned_cols=54 Identities=24% Similarity=0.489 Sum_probs=45.9
Q ss_pred hcCCCeEEEccceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEeceEEEecCCcccCC
Q psy8943 24 RLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSP 81 (134)
Q Consensus 24 ~~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~g~~~~~~a~~~vIlaaGai~tP 81 (134)
+.+.+++|++++.|++|+.+ +++|+||.+..++....+.+++-||||+|.+...
T Consensus 218 ~~~~gv~i~~~~~v~~Li~~----~g~v~Gv~~~~~g~~~~i~A~~aVIlAtGG~~~N 271 (557)
T PRK12844 218 ALAAGVPLWTNTPLTELIVE----DGRVVGVVVVRDGREVLIRARRGVLLASGGFGHN 271 (557)
T ss_pred HHhCCCEEEeCCEEEEEEEe----CCEEEEEEEEECCeEEEEEecceEEEecCCccCC
Confidence 34568999999999999876 3689999998788888899977899999988773
No 18
>PRK07121 hypothetical protein; Validated
Probab=97.04 E-value=0.0027 Score=53.31 Aligned_cols=54 Identities=31% Similarity=0.465 Sum_probs=44.8
Q ss_pred hcCCCeEEEccceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEeceEEEecCCcccC
Q psy8943 24 RLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINS 80 (134)
Q Consensus 24 ~~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~g~~~~~~a~~~vIlaaGai~t 80 (134)
+.+.+++|++++.|++|+.+. +++++||.+..++....+++++.||||+|.+..
T Consensus 187 ~~~~gv~i~~~~~v~~l~~~~---~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~~~ 240 (492)
T PRK07121 187 AAALGVQIRYDTRATRLIVDD---DGRVVGVEARRYGETVAIRARKGVVLAAGGFAM 240 (492)
T ss_pred HHhCCCEEEeCCEEEEEEECC---CCCEEEEEEEeCCcEEEEEeCCEEEECCCCcCc
Confidence 345689999999999998762 368999999777777788887799999998775
No 19
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=96.82 E-value=0.0043 Score=53.42 Aligned_cols=53 Identities=26% Similarity=0.396 Sum_probs=44.9
Q ss_pred cCCCeEEEccceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEeceEEEecCCcccCC
Q psy8943 25 LRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSP 81 (134)
Q Consensus 25 ~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~g~~~~~~a~~~vIlaaGai~tP 81 (134)
...+++|++++.|++|+.+ +++|+||.+..++....+.+++-||||+|.+...
T Consensus 228 ~~~Gv~i~~~t~v~~Li~~----~g~V~GV~~~~~g~~~~i~a~kaVILAtGGf~~n 280 (564)
T PRK12845 228 LRAGIPIWTETSLVRLTDD----GGRVTGAVVDHRGREVTVTARRGVVLAAGGFDHD 280 (564)
T ss_pred HHCCCEEEecCEeeEEEec----CCEEEEEEEEECCcEEEEEcCCEEEEecCCcccc
Confidence 4568999999999999864 3699999887777778888878999999998864
No 20
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=96.79 E-value=0.004 Score=50.74 Aligned_cols=50 Identities=22% Similarity=0.349 Sum_probs=40.4
Q ss_pred CCCeEEEccceEEEEEeccCCCCCeEEEEEEE--eCCeEEEEEeceEEEecCCcccC
Q psy8943 26 RKNLHIAMETQALRLLFDKSGPVPKAVGIEIL--RDGRKHIIRAKKEIISSAGAINS 80 (134)
Q Consensus 26 ~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~--~~g~~~~~~a~~~vIlaaGai~t 80 (134)
..+++|+.++.|++|+.+ +++|+||.+. .++....++++ .||||+|.+..
T Consensus 153 ~~gv~i~~~~~~~~Li~e----~g~V~Gv~~~~~~~g~~~~i~A~-aVIlAtGG~~~ 204 (417)
T PF00890_consen 153 EAGVDIRFNTRVTDLITE----DGRVTGVVAENPADGEFVRIKAK-AVILATGGFGG 204 (417)
T ss_dssp HTTEEEEESEEEEEEEEE----TTEEEEEEEEETTTCEEEEEEES-EEEE----BGG
T ss_pred hcCeeeeccceeeeEEEe----CCceeEEEEEECCCCeEEEEeee-EEEeccCcccc
Confidence 345999999999999997 3599999999 57888999995 99999999988
No 21
>PRK12839 hypothetical protein; Provisional
Probab=96.72 E-value=0.006 Score=52.61 Aligned_cols=53 Identities=13% Similarity=0.223 Sum_probs=42.6
Q ss_pred cCCCeEEEccceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEeceEEEecCCcccC
Q psy8943 25 LRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINS 80 (134)
Q Consensus 25 ~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~g~~~~~~a~~~vIlaaGai~t 80 (134)
.+.+++|+.++.|++|+.+ ++++|+||.+...+....+.+.+.||||+|++..
T Consensus 225 ~~~Gv~i~~~t~v~~Li~~---~~g~V~GV~~~~~~g~~~i~aak~VVLAtGGf~~ 277 (572)
T PRK12839 225 DDLGVDLRVSTSATSLTTD---KNGRVTGVRVQGPDGAVTVEATRGVVLATGGFPN 277 (572)
T ss_pred HHCCCEEEcCCEEEEEEEC---CCCcEEEEEEEeCCCcEEEEeCCEEEEcCCCccc
Confidence 4568999999999999876 2468999998764445566776899999999876
No 22
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=96.65 E-value=0.008 Score=51.81 Aligned_cols=55 Identities=22% Similarity=0.230 Sum_probs=44.5
Q ss_pred hcCCCeEEEccceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEeceEEEecCCcccCCc
Q psy8943 24 RLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQ 82 (134)
Q Consensus 24 ~~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~g~~~~~~a~~~vIlaaGai~tP~ 82 (134)
+.+.+++|+.++.|++|+.+ +++++||.+.+++....+++++.||||+|++..-.
T Consensus 227 a~~~Gv~i~~~t~v~~l~~~----~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~~n~ 281 (581)
T PRK06134 227 AEDLGVRIWESAPARELLRE----DGRVAGAVVETPGGLQEIRARKGVVLAAGGFPHDP 281 (581)
T ss_pred HHhCCCEEEcCCEEEEEEEe----CCEEEEEEEEECCcEEEEEeCCEEEEcCCCcccCH
Confidence 34568999999999999876 36899999877666667888779999999987533
No 23
>PRK06175 L-aspartate oxidase; Provisional
Probab=96.57 E-value=0.011 Score=49.24 Aligned_cols=51 Identities=24% Similarity=0.319 Sum_probs=41.3
Q ss_pred cCCCeEEEccceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEeceEEEecCCcccC
Q psy8943 25 LRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINS 80 (134)
Q Consensus 25 ~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~g~~~~~~a~~~vIlaaGai~t 80 (134)
++.+++|++++.|++|+.+ ++++.||.+.+++....+.+ +.||||+|++..
T Consensus 140 ~~~gV~i~~~t~v~~Li~~----~~~v~Gv~~~~~g~~~~i~A-k~VILAtGG~~~ 190 (433)
T PRK06175 140 KRKNITIIENCYLVDIIEN----DNTCIGAICLKDNKQINIYS-KVTILATGGIGG 190 (433)
T ss_pred hcCCCEEEECcEeeeeEec----CCEEEEEEEEECCcEEEEEc-CeEEEccCcccc
Confidence 4568999999999999765 35889988766666667888 799999998753
No 24
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=96.54 E-value=0.0094 Score=51.33 Aligned_cols=54 Identities=20% Similarity=0.353 Sum_probs=44.9
Q ss_pred hcCCCeEEEccceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEeceEEEecCCcccCC
Q psy8943 24 RLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSP 81 (134)
Q Consensus 24 ~~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~g~~~~~~a~~~vIlaaGai~tP 81 (134)
+.+.+++|++++.|++|+.+ +++++||.+..++....+.+.+.||||+|++..-
T Consensus 231 ~~~~Gv~i~~~t~v~~Li~~----~g~V~GV~~~~~g~~~~i~A~~~VVlAtGg~~~n 284 (578)
T PRK12843 231 LRARGVRILTQTDVESLETD----HGRVIGATVVQGGVRRRIRARGGVVLATGGFNRH 284 (578)
T ss_pred HHhCCCEEEeCCEEEEEEee----CCEEEEEEEecCCeEEEEEccceEEECCCCcccC
Confidence 34568999999999999875 3689999988777777888767899999998773
No 25
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=96.53 E-value=0.018 Score=49.96 Aligned_cols=63 Identities=17% Similarity=0.307 Sum_probs=46.7
Q ss_pred hhhhhh---hhcCCCeEEEccceEEEEEeccCCCCCeEEEEEEEeCC--eEEEEEeceEEEecCCccc
Q psy8943 17 KAFLRP---IRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDG--RKHIIRAKKEIISSAGAIN 79 (134)
Q Consensus 17 ~~~l~~---~~~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~g--~~~~~~a~~~vIlaaGai~ 79 (134)
.+++.| .+...++++++++.|++|.++..++.++|+||.+.++| ....+.+.+.||++.|.+.
T Consensus 226 eSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTnGs~t 293 (576)
T PRK13977 226 ESLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVTNGSIT 293 (576)
T ss_pred hHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEeCCcCc
Confidence 344444 34567899999999999998633233689999998744 4456777799999999763
No 26
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=96.37 E-value=0.013 Score=48.76 Aligned_cols=59 Identities=24% Similarity=0.273 Sum_probs=46.9
Q ss_pred hcCCCeEEEccceEEEEEeccCCCCCeEEEEEEE-eCCeEEEEEeceEEEecCCcccCCchhhhc
Q psy8943 24 RLRKNLHIAMETQALRLLFDKSGPVPKAVGIEIL-RDGRKHIIRAKKEIISSAGAINSPQLLMVS 87 (134)
Q Consensus 24 ~~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~-~~g~~~~~~a~~~vIlaaGai~tP~lLl~S 87 (134)
..+.+++|+.++.|++|+.+ +++++||.+. .++....+++ +.||+|+|.+..+..|+..
T Consensus 141 ~~~~gv~i~~~t~v~~l~~~----~g~v~gv~~~~~~g~~~~i~a-~~VIlAtGg~~~n~~~~~~ 200 (466)
T PRK08274 141 AERLGVEIRYDAPVTALELD----DGRFVGARAGSAAGGAERIRA-KAVVLAAGGFESNREWLRE 200 (466)
T ss_pred HHHCCCEEEcCCEEEEEEec----CCeEEEEEEEccCCceEEEEC-CEEEECCCCCCCCHHHHHh
Confidence 34568999999999999875 3689999885 3565667888 7999999999887766664
No 27
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.30 E-value=0.018 Score=49.60 Aligned_cols=52 Identities=19% Similarity=0.259 Sum_probs=43.3
Q ss_pred cCCCeEEEccceEEEEEeccCCCCCeEEEEEEEe--CCeEEEEEeceEEEecCCcccC
Q psy8943 25 LRKNLHIAMETQALRLLFDKSGPVPKAVGIEILR--DGRKHIIRAKKEIISSAGAINS 80 (134)
Q Consensus 25 ~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~--~g~~~~~~a~~~vIlaaGai~t 80 (134)
...+++|+.++.+++|+.+ +++++.||.+.+ +|....+.| +-||||+|++..
T Consensus 137 ~~~gi~i~~~~~~~~Li~~---~~g~v~Gv~~~~~~~g~~~~i~A-kaVVLATGG~~~ 190 (570)
T PRK05675 137 LKNGTTFLNEWYAVDLVKN---QDGAVVGVIAICIETGETVYIKS-KATVLATGGAGR 190 (570)
T ss_pred hccCCEEEECcEEEEEEEc---CCCeEEEEEEEEcCCCcEEEEec-CeEEECCCCccc
Confidence 3568999999999999886 246999999865 677778888 799999998764
No 28
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=96.20 E-value=0.022 Score=49.45 Aligned_cols=50 Identities=16% Similarity=0.112 Sum_probs=41.1
Q ss_pred CCCeEEEccceEEEEEeccCCCCCeEEEEEEEe--CCeEEEEEeceEEEecCCccc
Q psy8943 26 RKNLHIAMETQALRLLFDKSGPVPKAVGIEILR--DGRKHIIRAKKEIISSAGAIN 79 (134)
Q Consensus 26 ~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~--~g~~~~~~a~~~vIlaaGai~ 79 (134)
.++++|+.++.|++|+.+ ++++++||.+.+ ++....+.+ +.||||+|.+.
T Consensus 145 ~~gV~i~~~t~v~~Li~d---d~grV~GV~~~~~~~g~~~~i~A-kaVVLATGG~g 196 (603)
T TIGR01811 145 AGLVEKYEGWEMLDIIVV---DGNRARGIIARNLVTGEIETHSA-DAVILATGGYG 196 (603)
T ss_pred cCCcEEEeCcEEEEEEEc---CCCEEEEEEEEECCCCcEEEEEc-CEEEECCCCCc
Confidence 358999999999999886 246899999876 566667888 79999999874
No 29
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=96.17 E-value=0.022 Score=49.01 Aligned_cols=51 Identities=25% Similarity=0.344 Sum_probs=42.7
Q ss_pred cCCCeEEEccceEEEEEeccCCCCCeEEEEEEEe--CCeEEEEEeceEEEecCCcccC
Q psy8943 25 LRKNLHIAMETQALRLLFDKSGPVPKAVGIEILR--DGRKHIIRAKKEIISSAGAINS 80 (134)
Q Consensus 25 ~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~--~g~~~~~~a~~~vIlaaGai~t 80 (134)
.+.+++|+.++.|++|+.+ ++++.||...+ ++....+.| +-||||+|++..
T Consensus 130 ~~~gi~i~~~~~~~~Li~~----~g~v~Ga~~~~~~~g~~~~i~A-kaVILATGG~~~ 182 (565)
T TIGR01816 130 LKADTSFFNEYFALDLLME----DGECRGVIAYCLETGEIHRFRA-KAVVLATGGYGR 182 (565)
T ss_pred HhCCCEEEeccEEEEEEee----CCEEEEEEEEEcCCCcEEEEEe-CeEEECCCCccc
Confidence 4568999999999999875 36999998865 677778888 799999998764
No 30
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.05 E-value=0.025 Score=48.96 Aligned_cols=52 Identities=27% Similarity=0.381 Sum_probs=42.9
Q ss_pred cCCCeEEEccceEEEEEeccCCCCCeEEEEEEEe--CCeEEEEEeceEEEecCCcccC
Q psy8943 25 LRKNLHIAMETQALRLLFDKSGPVPKAVGIEILR--DGRKHIIRAKKEIISSAGAINS 80 (134)
Q Consensus 25 ~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~--~g~~~~~~a~~~vIlaaGai~t 80 (134)
.+.+++|++++.|++|+.+ ++++++||.+.+ ++..+.+.+ +.||||+|.+..
T Consensus 160 ~~~gi~i~~~~~v~~Li~~---~~g~v~Gv~~~~~~~g~~~~i~A-kaVVLATGG~~~ 213 (598)
T PRK09078 160 LKHNAEFFIEYFALDLIMD---DGGVCRGVVAWNLDDGTLHRFRA-HMVVLATGGYGR 213 (598)
T ss_pred hhcCCEEEEeEEEEEEEEc---CCCEEEEEEEEECCCCcEEEEEc-CEEEECCCCCcc
Confidence 3568999999999999886 236899998864 677778888 799999998875
No 31
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=96.01 E-value=0.026 Score=48.50 Aligned_cols=52 Identities=23% Similarity=0.381 Sum_probs=42.3
Q ss_pred hcCCCeEEEccceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEeceEEEecCCccc
Q psy8943 24 RLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAIN 79 (134)
Q Consensus 24 ~~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~g~~~~~~a~~~vIlaaGai~ 79 (134)
+.+.+++|++++.|++|+.+ +++++||.+.+.+....+.+++.||||+|.+.
T Consensus 224 ~~~~Gv~i~~~~~v~~l~~~----~g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~ 275 (574)
T PRK12842 224 ALDLGIPILTGTPARELLTE----GGRVVGARVIDAGGERRITARRGVVLACGGFS 275 (574)
T ss_pred HHhCCCEEEeCCEEEEEEee----CCEEEEEEEEcCCceEEEEeCCEEEEcCCCcc
Confidence 34678999999999999876 36899999876554556788678999999886
No 32
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.97 E-value=0.027 Score=49.26 Aligned_cols=51 Identities=18% Similarity=0.210 Sum_probs=42.4
Q ss_pred cCCCeEEEccceEEEEEeccCCCCCeEEEEEEEe--CCeEEEEEeceEEEecCCcccC
Q psy8943 25 LRKNLHIAMETQALRLLFDKSGPVPKAVGIEILR--DGRKHIIRAKKEIISSAGAINS 80 (134)
Q Consensus 25 ~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~--~g~~~~~~a~~~vIlaaGai~t 80 (134)
...+++|+.++.|++|+.+ +++++||.+.+ ++....+.+ +.||||+|.+..
T Consensus 181 ~~~gV~i~~~t~v~~Li~d----~g~V~GV~~~~~~~g~~~~i~A-kaVVLATGG~g~ 233 (640)
T PRK07573 181 AAGTVKMYTRTEMLDLVVV----DGRARGIVARNLVTGEIERHTA-DAVVLATGGYGN 233 (640)
T ss_pred HhcCCEEEeceEEEEEEEe----CCEEEEEEEEECCCCcEEEEEC-CEEEECCCCccc
Confidence 4578999999999999876 36899999876 566667888 799999999765
No 33
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.88 E-value=0.039 Score=47.76 Aligned_cols=52 Identities=21% Similarity=0.259 Sum_probs=42.8
Q ss_pred cCCCeEEEccceEEEEEeccCCCCCeEEEEEEEe--CCeEEEEEeceEEEecCCcccC
Q psy8943 25 LRKNLHIAMETQALRLLFDKSGPVPKAVGIEILR--DGRKHIIRAKKEIISSAGAINS 80 (134)
Q Consensus 25 ~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~--~g~~~~~~a~~~vIlaaGai~t 80 (134)
...+++|++++.|++|+.+ +++++.||.+.+ ++....+.| +-||||+|++..
T Consensus 154 ~~~gi~i~~~~~~~~Li~~---~~g~v~Gv~~~~~~~g~~~~i~A-kaVILATGG~~~ 207 (588)
T PRK08958 154 LKNHTTIFSEWYALDLVKN---QDGAVVGCTAICIETGEVVYFKA-RATVLATGGAGR 207 (588)
T ss_pred hhcCCEEEeCcEEEEEEEC---CCCEEEEEEEEEcCCCcEEEEEc-CeEEECCCCccc
Confidence 3568999999999999875 246999998864 677778888 799999998764
No 34
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.86 E-value=0.032 Score=47.64 Aligned_cols=52 Identities=25% Similarity=0.411 Sum_probs=42.3
Q ss_pred cCCCeEEEccceEEEEEeccCCCCCeEEEEEEEe--CCeEEEEEeceEEEecCCcccC
Q psy8943 25 LRKNLHIAMETQALRLLFDKSGPVPKAVGIEILR--DGRKHIIRAKKEIISSAGAINS 80 (134)
Q Consensus 25 ~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~--~g~~~~~~a~~~vIlaaGai~t 80 (134)
.+.+++|++++.|++|+.+ ++++++||.+.+ ++....+.+ +.||||+|++..
T Consensus 145 ~~~gv~i~~~t~v~~Li~~---~~~~v~Gv~~~~~~~g~~~~i~A-kaVIlATGG~~~ 198 (543)
T PRK06263 145 IKERIKILEEVMAIKLIVD---ENREVIGAIFLDLRNGEIFPIYA-KATILATGGAGQ 198 (543)
T ss_pred hcCCCEEEeCeEeeeeEEe---CCcEEEEEEEEECCCCcEEEEEc-CcEEECCCCCCC
Confidence 4578999999999999886 234699998765 566677888 799999999864
No 35
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=95.78 E-value=0.038 Score=48.14 Aligned_cols=52 Identities=25% Similarity=0.367 Sum_probs=42.4
Q ss_pred cCCCeEEEccceEEEEEeccCCCCCeEEEEEEEe--CCeEEEEEeceEEEecCCcccC
Q psy8943 25 LRKNLHIAMETQALRLLFDKSGPVPKAVGIEILR--DGRKHIIRAKKEIISSAGAINS 80 (134)
Q Consensus 25 ~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~--~g~~~~~~a~~~vIlaaGai~t 80 (134)
.+.+++|+.++.|++|+.+ +++++.||.+.+ ++..+.+.+ +.||||+|++..
T Consensus 177 ~~~gv~i~~~~~~~~Li~~---~~g~v~Gv~~~~~~~g~~~~i~A-kaVVLATGG~~~ 230 (617)
T PTZ00139 177 LKYDCNFFIEYFALDLIMD---EDGECRGVIAMSMEDGSIHRFRA-HYTVIATGGYGR 230 (617)
T ss_pred HhCCCEEEeceEEEEEEEC---CCCEEEEEEEEECCCCeEEEEEC-CcEEEeCCCCcc
Confidence 3568999999999999884 246899998765 677778888 799999998764
No 36
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=95.77 E-value=0.041 Score=45.37 Aligned_cols=53 Identities=17% Similarity=0.269 Sum_probs=40.9
Q ss_pred hcCCCeEEEccceEEEEEeccCCCCCeEEEEEEEeC-CeEEEEEeceEEEecCCcccC
Q psy8943 24 RLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRD-GRKHIIRAKKEIISSAGAINS 80 (134)
Q Consensus 24 ~~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~-g~~~~~~a~~~vIlaaGai~t 80 (134)
+...+++|+.++.|++|+.+. +++++||.+.+. +....+.+ +.||+|+|++..
T Consensus 140 ~~~~gv~i~~~~~v~~l~~~~---~g~v~Gv~~~~~~g~~~~~~a-~~VVlAtGg~~~ 193 (439)
T TIGR01813 140 AKKEGIDTRLNSKVEDLIQDD---QGTVVGVVVKGKGKGIYIKAA-KAVVLATGGFGS 193 (439)
T ss_pred HHHcCCEEEeCCEeeEeEECC---CCcEEEEEEEeCCCeEEEEec-ceEEEecCCCCC
Confidence 345679999999999998862 468999998764 44444556 899999998765
No 37
>PRK07395 L-aspartate oxidase; Provisional
Probab=95.69 E-value=0.028 Score=48.27 Aligned_cols=52 Identities=27% Similarity=0.413 Sum_probs=42.2
Q ss_pred cCCCeEEEccceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEeceEEEecCCccc
Q psy8943 25 LRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAIN 79 (134)
Q Consensus 25 ~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~g~~~~~~a~~~vIlaaGai~ 79 (134)
+.++++|+.++.|++|+.+. +++++.||.+..++....+.+ +.||||+|+..
T Consensus 146 ~~~gi~i~~~~~v~~Li~~~--~~g~v~Gv~~~~~g~~~~i~A-kaVILATGG~~ 197 (553)
T PRK07395 146 QRPNIEIISQALALSLWLEP--ETGRCQGISLLYQGQITWLRA-GAVILATGGGG 197 (553)
T ss_pred hcCCcEEEECcChhhheecC--CCCEEEEEEEEECCeEEEEEc-CEEEEcCCCCc
Confidence 35689999999999998762 136899998877777667788 79999999864
No 38
>PLN02815 L-aspartate oxidase
Probab=95.66 E-value=0.045 Score=47.57 Aligned_cols=53 Identities=17% Similarity=0.176 Sum_probs=41.7
Q ss_pred cCCCeEEEccceEEEEEeccCCCCC--eEEEEEEEe--CCeEEEEEeceEEEecCCcccC
Q psy8943 25 LRKNLHIAMETQALRLLFDKSGPVP--KAVGIEILR--DGRKHIIRAKKEIISSAGAINS 80 (134)
Q Consensus 25 ~~~nl~i~t~~~V~ri~~~~~~~~~--~a~gV~~~~--~g~~~~~~a~~~vIlaaGai~t 80 (134)
+.++++|+.++.+++|+.+.. ++ +++||.+.+ ++....+.+ +-||||+|.+..
T Consensus 167 ~~~~i~i~~~~~~~~Li~~~~--g~~~~v~Gv~~~~~~~g~~~~i~A-kaVILATGG~g~ 223 (594)
T PLN02815 167 NDPNITFFEHHFAIDLLTSQD--GGSIVCHGADVLDTRTGEVVRFIS-KVTLLASGGAGH 223 (594)
T ss_pred hcCCCEEEeceEhheeeeecC--CCccEEEEEEEEEcCCCeEEEEEe-ceEEEcCCccee
Confidence 456899999999999987631 22 489998865 576677888 899999998753
No 39
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.64 E-value=0.054 Score=46.63 Aligned_cols=49 Identities=22% Similarity=0.309 Sum_probs=41.3
Q ss_pred CCCeEEEccceEEEEEeccCCCCCeEEEEEEEe--CCeEEEEEeceEEEecCCccc
Q psy8943 26 RKNLHIAMETQALRLLFDKSGPVPKAVGIEILR--DGRKHIIRAKKEIISSAGAIN 79 (134)
Q Consensus 26 ~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~--~g~~~~~~a~~~vIlaaGai~ 79 (134)
..+++|+.++.+++|+.+ +++++||.+.+ ++....+.+ +-||||+|.+.
T Consensus 148 ~~gv~i~~~~~~~~Li~~----~g~v~Gv~~~~~~~g~~~~i~A-kaVVLATGG~~ 198 (566)
T PRK06452 148 GLNVDFYNEWFSLDLVTD----NKKVVGIVAMQMKTLTPFFFKT-KAVVLATGGMG 198 (566)
T ss_pred hCCCEEEeCcEEEEEEEE----CCEEEEEEEEECCCCeEEEEEe-CeEEECCCccc
Confidence 458999999999999876 36999998876 456667888 89999999886
No 40
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=95.60 E-value=0.05 Score=47.63 Aligned_cols=52 Identities=29% Similarity=0.415 Sum_probs=42.8
Q ss_pred cCCCeEEEccceEEEEEeccCCCCCeEEEEEEEe--CCeEEEEEeceEEEecCCcccC
Q psy8943 25 LRKNLHIAMETQALRLLFDKSGPVPKAVGIEILR--DGRKHIIRAKKEIISSAGAINS 80 (134)
Q Consensus 25 ~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~--~g~~~~~~a~~~vIlaaGai~t 80 (134)
.+.+++|+.++.+++|+.+ +++++.||.+.+ +|....+.+ +.||||+|++..
T Consensus 198 ~~~gv~i~~~~~~~~Li~~---~~g~v~Gv~~~~~~~g~~~~i~A-kaVILATGG~g~ 251 (635)
T PLN00128 198 MKHNTQFFVEYFALDLIMD---SDGACQGVIALNMEDGTLHRFRA-HSTILATGGYGR 251 (635)
T ss_pred HhCCCEEEEeeEEEEEEEc---CCCEEEEEEEEEcCCCeEEEEEc-CeEEECCCCCcc
Confidence 3468999999999999876 236899998865 677778888 799999998864
No 41
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.53 E-value=0.06 Score=46.94 Aligned_cols=48 Identities=21% Similarity=0.261 Sum_probs=39.4
Q ss_pred CeEEEccceEEEEEeccCCCCCeEEEEEEEe--CCeEEEEEeceEEEecCCcccC
Q psy8943 28 NLHIAMETQALRLLFDKSGPVPKAVGIEILR--DGRKHIIRAKKEIISSAGAINS 80 (134)
Q Consensus 28 nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~--~g~~~~~~a~~~vIlaaGai~t 80 (134)
|++|+.++.|++|+.+ ++++.||.+.+ ++....+.+ +.||||+|++..
T Consensus 165 ~v~i~~~~~v~~L~~~----~g~v~Gv~~~~~~~g~~~~i~A-k~VVlATGG~~~ 214 (626)
T PRK07803 165 RIKVFAECTITELLKD----GGRIAGAFGYWRESGRFVLFEA-PAVVLATGGIGK 214 (626)
T ss_pred ceEEEeCCEEEEEEEE----CCEEEEEEEEECCCCeEEEEEc-CeEEECCCcccC
Confidence 4999999999999875 36899998764 566677888 799999998654
No 42
>PRK08275 putative oxidoreductase; Provisional
Probab=95.41 E-value=0.064 Score=45.93 Aligned_cols=52 Identities=31% Similarity=0.317 Sum_probs=41.2
Q ss_pred hcCCCeEEEccceEEEEEeccCCCCCeEEEEEEEe--CCeEEEEEeceEEEecCCccc
Q psy8943 24 RLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILR--DGRKHIIRAKKEIISSAGAIN 79 (134)
Q Consensus 24 ~~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~--~g~~~~~~a~~~vIlaaGai~ 79 (134)
..+.+++|+.++.|++|+.+. ++++.||.+.+ ++....+.+ +.||||+|+..
T Consensus 147 ~~~~gv~i~~~~~v~~Li~~~---~g~v~Gv~~~~~~~g~~~~i~A-k~VIlATGG~~ 200 (554)
T PRK08275 147 LKRARVLITNRIMATRLLTDA---DGRVAGALGFDCRTGEFLVIRA-KAVILCCGAAG 200 (554)
T ss_pred HHHCCCEEEcceEEEEEEEcC---CCeEEEEEEEecCCCcEEEEEC-CEEEECCCCcc
Confidence 345689999999999998762 35899998764 566667788 79999999874
No 43
>PRK07512 L-aspartate oxidase; Provisional
Probab=95.41 E-value=0.044 Score=46.59 Aligned_cols=50 Identities=20% Similarity=0.339 Sum_probs=40.5
Q ss_pred cCCCeEEEccceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEeceEEEecCCccc
Q psy8943 25 LRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAIN 79 (134)
Q Consensus 25 ~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~g~~~~~~a~~~vIlaaGai~ 79 (134)
+.++++|+.++.|++|..+ +++++||.+.+.+....+.+ +.||||+|++.
T Consensus 148 ~~~gV~i~~~~~v~~Li~~----~g~v~Gv~~~~~~~~~~i~A-k~VVLATGG~~ 197 (513)
T PRK07512 148 ATPSITVLEGAEARRLLVD----DGAVAGVLAATAGGPVVLPA-RAVVLATGGIG 197 (513)
T ss_pred hCCCCEEEECcChhheeec----CCEEEEEEEEeCCeEEEEEC-CEEEEcCCCCc
Confidence 3468999999999999765 36899998876555557788 79999999975
No 44
>PRK09077 L-aspartate oxidase; Provisional
Probab=95.34 E-value=0.071 Score=45.53 Aligned_cols=56 Identities=25% Similarity=0.364 Sum_probs=43.1
Q ss_pred hcCCCeEEEccceEEEEEeccC--CCCCeEEEEEEEe--CCeEEEEEeceEEEecCCcccC
Q psy8943 24 RLRKNLHIAMETQALRLLFDKS--GPVPKAVGIEILR--DGRKHIIRAKKEIISSAGAINS 80 (134)
Q Consensus 24 ~~~~nl~i~t~~~V~ri~~~~~--~~~~~a~gV~~~~--~g~~~~~~a~~~vIlaaGai~t 80 (134)
...+|++|+.++.|++|+.+.. .++++++||.+.+ ++....+.+ +-||||+|++..
T Consensus 149 ~~~~~I~v~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i~A-k~VVlATGG~~~ 208 (536)
T PRK09077 149 RNHPNITVLERHNAIDLITSDKLGLPGRRVVGAYVLNRNKERVETIRA-KFVVLATGGASK 208 (536)
T ss_pred HhCCCcEEEeeEEeeeeeecccccCCCCEEEEEEEEECCCCcEEEEec-CeEEECCCCCCC
Confidence 3457999999999999987521 0136899999875 566677888 799999999764
No 45
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=95.32 E-value=0.06 Score=47.25 Aligned_cols=50 Identities=16% Similarity=0.264 Sum_probs=42.2
Q ss_pred cCCCeEEEccceEEEEEeccCCCCCeEEEEEEEe--CCeEEEEEeceEEEecCCccc
Q psy8943 25 LRKNLHIAMETQALRLLFDKSGPVPKAVGIEILR--DGRKHIIRAKKEIISSAGAIN 79 (134)
Q Consensus 25 ~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~--~g~~~~~~a~~~vIlaaGai~ 79 (134)
.+.+++|+.++.|++|+.+ ++++.||.+.+ +|....+.| +.||||+|++.
T Consensus 169 ~~~gv~i~~~~~~~~Li~~----~g~v~Gv~~~~~~~G~~~~i~A-kaVVLATGG~g 220 (657)
T PRK08626 169 IKLGVPVHDRKEAIALIHD----GKRCYGAVVRCLITGELRAYVA-KATLIATGGYG 220 (657)
T ss_pred HhCCCEEEeeEEEEEEEEE----CCEEEEEEEEEcCCCcEEEEEc-CeEEECCCccc
Confidence 4568999999999999876 36899999875 677778888 79999999875
No 46
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=95.25 E-value=0.03 Score=47.65 Aligned_cols=56 Identities=23% Similarity=0.434 Sum_probs=43.5
Q ss_pred hhhhhhcCCCeEEEccceEEEEEeccCCCCCeEEEEEEEeCC-eEEEEEeceEEEecCCcc
Q psy8943 19 FLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDG-RKHIIRAKKEIISSAGAI 78 (134)
Q Consensus 19 ~l~~~~~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~g-~~~~~~a~~~vIlaaGai 78 (134)
++..+.+++|++|+.++.+.+|+.++ +..+.||.+.+.+ ....+.+ +.||||+|.+
T Consensus 139 L~~~v~~~p~I~v~e~~~a~~li~~~---~~~~~Gv~~~~~~~~~~~~~a-~~vVLATGG~ 195 (518)
T COG0029 139 LLKKVRNRPNITVLEGAEALDLIIED---GIGVAGVLVLNRNGELGTFRA-KAVVLATGGL 195 (518)
T ss_pred HHHHHhcCCCcEEEecchhhhhhhcC---CceEeEEEEecCCCeEEEEec-CeEEEecCCC
Confidence 33345567999999999999999883 2356699988754 4677888 8999999965
No 47
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=95.23 E-value=0.098 Score=45.21 Aligned_cols=51 Identities=20% Similarity=0.267 Sum_probs=41.4
Q ss_pred cCCCeEEEccceEEEEEeccCCCCCeEEEEEEEe--CCeEEEEEeceEEEecCCcccC
Q psy8943 25 LRKNLHIAMETQALRLLFDKSGPVPKAVGIEILR--DGRKHIIRAKKEIISSAGAINS 80 (134)
Q Consensus 25 ~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~--~g~~~~~~a~~~vIlaaGai~t 80 (134)
..++++++.++.|++|+.+ ++++.||.+.+ ++....+++ +.||||+|+...
T Consensus 145 ~~~~i~i~~~~~v~~Li~~----~g~v~Gv~~~~~~~g~~~~i~A-kaVIlATGG~~~ 197 (582)
T PRK09231 145 KYPQIQRFDEHFVLDILVD----DGHVRGLVAMNMMEGTLVQIRA-NAVVMATGGAGR 197 (582)
T ss_pred cCCCcEEEeCeEEEEEEEe----CCEEEEEEEEEcCCCcEEEEEC-CEEEECCCCCcC
Confidence 3468999999999999876 36899998764 566677888 799999998653
No 48
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=95.23 E-value=0.094 Score=45.37 Aligned_cols=51 Identities=20% Similarity=0.225 Sum_probs=41.9
Q ss_pred cCCCeEEEccceEEEEEeccCCCCCeEEEEEEEe--CCeEEEEEeceEEEecCCcccC
Q psy8943 25 LRKNLHIAMETQALRLLFDKSGPVPKAVGIEILR--DGRKHIIRAKKEIISSAGAINS 80 (134)
Q Consensus 25 ~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~--~g~~~~~~a~~~vIlaaGai~t 80 (134)
..++++++.++.|++|+.+ ++++.||.+.+ ++....+.+ +.||||+|....
T Consensus 144 ~~~~i~i~~~~~v~~Li~~----~g~v~Gv~~~~~~~g~~~~i~A-kaVILATGG~~~ 196 (580)
T TIGR01176 144 TYPQIMRYDEWFVTDLLVD----DGRVCGLVAIEMAEGRLVTILA-DAVVLATGGAGR 196 (580)
T ss_pred hcCCCEEEeCeEEEEEEee----CCEEEEEEEEEcCCCcEEEEec-CEEEEcCCCCcc
Confidence 3468999999999999876 36899998765 676678888 799999998753
No 49
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=95.19 E-value=0.093 Score=44.20 Aligned_cols=50 Identities=20% Similarity=0.338 Sum_probs=40.7
Q ss_pred CCCeEEEccceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEeceEEEecCCcccC
Q psy8943 26 RKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINS 80 (134)
Q Consensus 26 ~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~g~~~~~~a~~~vIlaaGai~t 80 (134)
.++++|+.++.|++|+.+ ++++.||.+.+.+....+.+ +.||+|+|+...
T Consensus 141 ~~gi~i~~~~~v~~l~~~----~g~v~Gv~~~~~~~~~~i~A-~~VVlAtGG~~~ 190 (488)
T TIGR00551 141 HPNIRIIEGENALDLLIE----TGRVVGVWVWNRETVETCHA-DAVVLATGGAGK 190 (488)
T ss_pred cCCcEEEECeEeeeeecc----CCEEEEEEEEECCcEEEEEc-CEEEECCCcccC
Confidence 378999999999999875 35889998876555556777 799999999764
No 50
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=95.18 E-value=0.065 Score=45.83 Aligned_cols=50 Identities=16% Similarity=0.215 Sum_probs=38.9
Q ss_pred CCCeEEEccceEEEEEeccCCCCCeEEEEEEEe--C-------------CeEEEEEeceEEEecCCcccC
Q psy8943 26 RKNLHIAMETQALRLLFDKSGPVPKAVGIEILR--D-------------GRKHIIRAKKEIISSAGAINS 80 (134)
Q Consensus 26 ~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~--~-------------g~~~~~~a~~~vIlaaGai~t 80 (134)
..+++|++++.+++|+.+ +++|+||.+.. + +....+.+ +-||||+|.+..
T Consensus 164 ~~gv~i~~~t~~~~Li~~----~g~V~Gv~~~~~~~~~~~~~~~~~~~~~~~~~i~A-kaVILATGGf~~ 228 (549)
T PRK12834 164 RGLVRFRFRHRVDELVVT----DGAVTGVRGTVLEPSDAERGEASSREVVGEFELRA-QAVIVTSGGIGG 228 (549)
T ss_pred hCCceEEecCEeeEEEEe----CCEEEEEEEEecccccccccccccccccceEEEec-CEEEEeCCCccc
Confidence 456999999999999876 36999998641 1 13457777 789999998874
No 51
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.99 E-value=0.11 Score=44.75 Aligned_cols=55 Identities=22% Similarity=0.374 Sum_probs=42.1
Q ss_pred hcCCCeEEEccceEEEEEeccCCCCCeEEEEEEEe--CCeEEEEEeceEEEecCCccc
Q psy8943 24 RLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILR--DGRKHIIRAKKEIISSAGAIN 79 (134)
Q Consensus 24 ~~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~--~g~~~~~~a~~~vIlaaGai~ 79 (134)
+...+++|+.++.|++|+.+...++++++||.+.+ ++..+.+.+ +.||||+|...
T Consensus 150 ~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~A-kaVVLATGG~~ 206 (583)
T PRK08205 150 CVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHA-KAVVFATGGSG 206 (583)
T ss_pred HHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEe-CeEEECCCCCc
Confidence 34568999999999999876210126899998754 566667888 79999999876
No 52
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=94.95 E-value=0.099 Score=44.76 Aligned_cols=50 Identities=22% Similarity=0.310 Sum_probs=41.0
Q ss_pred CCCeEEEccceEEEEEeccCCCCCeEEEEEEEe--CCeEEEEEeceEEEecCCcccC
Q psy8943 26 RKNLHIAMETQALRLLFDKSGPVPKAVGIEILR--DGRKHIIRAKKEIISSAGAINS 80 (134)
Q Consensus 26 ~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~--~g~~~~~~a~~~vIlaaGai~t 80 (134)
..+++|+.++.|++|+.+ +++++||.+.+ ++....+.+ +.||||+|+...
T Consensus 141 ~~gv~i~~~~~v~~L~~~----~g~v~Gv~~~~~~~g~~~~i~A-k~VVlAtGG~~~ 192 (566)
T TIGR01812 141 KLGVSFFNEYFALDLIHD----DGRVRGVVAYDLKTGEIVFFRA-KAVVLATGGYGR 192 (566)
T ss_pred HcCCEEEeccEEEEEEEe----CCEEEEEEEEECCCCcEEEEEC-CeEEECCCcccC
Confidence 458999999999999876 36899998865 566667888 799999998753
No 53
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.94 E-value=0.11 Score=44.89 Aligned_cols=52 Identities=23% Similarity=0.318 Sum_probs=41.5
Q ss_pred cCCCeEEEccceEEEEEeccCCCCCeEEEEEEEe--CCeEEEEEeceEEEecCCcccC
Q psy8943 25 LRKNLHIAMETQALRLLFDKSGPVPKAVGIEILR--DGRKHIIRAKKEIISSAGAINS 80 (134)
Q Consensus 25 ~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~--~g~~~~~~a~~~vIlaaGai~t 80 (134)
...+++++.++.|++|+.+ +++++.||.+.+ ++....+.+ +.||||+|....
T Consensus 159 ~~~gi~i~~~~~~~~Li~~---~~g~v~Gv~~~~~~~g~~~~i~A-kaVILATGG~~~ 212 (591)
T PRK07057 159 VAAKTQFFVEWMALDLIRD---ADGDVLGVTALEMETGDVYILEA-KTTLFATGGAGR 212 (591)
T ss_pred HhcCCEEEeCcEEEEEEEc---CCCeEEEEEEEEcCCCeEEEEEC-CeEEECCCCccc
Confidence 3468999999999999876 246899998864 566667777 799999998754
No 54
>KOG2404|consensus
Probab=94.92 E-value=0.029 Score=45.99 Aligned_cols=49 Identities=18% Similarity=0.372 Sum_probs=40.1
Q ss_pred CCeEEEccceEEEEEeccCCCCCeEEEEEEEe-CCeEEEEEeceEEEecCCcccC
Q psy8943 27 KNLHIAMETQALRLLFDKSGPVPKAVGIEILR-DGRKHIIRAKKEIISSAGAINS 80 (134)
Q Consensus 27 ~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~-~g~~~~~~a~~~vIlaaGai~t 80 (134)
.-++|.++++|.+|+-+ .++++||+|.+ +|++..+.. ..||+|.|.+.-
T Consensus 158 e~~ki~~nskvv~il~n----~gkVsgVeymd~sgek~~~~~-~~VVlatGGf~y 207 (477)
T KOG2404|consen 158 ELVKILLNSKVVDILRN----NGKVSGVEYMDASGEKSKIIG-DAVVLATGGFGY 207 (477)
T ss_pred HHHhhhhcceeeeeecC----CCeEEEEEEEcCCCCccceec-CceEEecCCcCc
Confidence 34799999999999843 57999999998 677666666 699999998764
No 55
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.90 E-value=0.12 Score=44.42 Aligned_cols=50 Identities=28% Similarity=0.468 Sum_probs=40.7
Q ss_pred cCCCeEEEccceEEEEEeccCCCCCeEEEEEEEe--CCeEEEEEeceEEEecCCccc
Q psy8943 25 LRKNLHIAMETQALRLLFDKSGPVPKAVGIEILR--DGRKHIIRAKKEIISSAGAIN 79 (134)
Q Consensus 25 ~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~--~g~~~~~~a~~~vIlaaGai~ 79 (134)
...+++|++++.|+.|+.+ ++++.||...+ ++....+.+ +.||||+|+..
T Consensus 146 ~~~gi~i~~~t~v~~L~~~----~g~v~Gv~~~~~~~g~~~~i~A-kaVVlATGG~~ 197 (575)
T PRK05945 146 RRYGVTIYDEWYVMRLILE----DNQAKGVVMYHIADGRLEVVRA-KAVMFATGGYG 197 (575)
T ss_pred hhCCCEEEeCcEEEEEEEE----CCEEEEEEEEEcCCCeEEEEEC-CEEEECCCCCc
Confidence 4568999999999999876 36899998654 566667888 79999999875
No 56
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=94.87 E-value=0.11 Score=43.96 Aligned_cols=52 Identities=10% Similarity=0.272 Sum_probs=41.1
Q ss_pred cCCCeEEEccceEEEEEeccCCCCCeEEEEEEEeC-CeEEEEEeceEEEecCCcccCC
Q psy8943 25 LRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRD-GRKHIIRAKKEIISSAGAINSP 81 (134)
Q Consensus 25 ~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~-g~~~~~~a~~~vIlaaGai~tP 81 (134)
...+++|++++.|++|..+ +++++||.+... +....+.+ +.||+|+|.+...
T Consensus 201 ~~~gv~i~~~t~v~~l~~~----~g~V~Gv~~~~~~g~~~~i~a-~~VVlAtGG~~~n 253 (506)
T PRK06481 201 QERKIPLFVNADVTKITEK----DGKVTGVKVKINGKETKTISS-KAVVVTTGGFGAN 253 (506)
T ss_pred HHcCCeEEeCCeeEEEEec----CCEEEEEEEEeCCCeEEEEec-CeEEEeCCCcccC
Confidence 4567999999999999754 368999988753 35567888 7999999987654
No 57
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.83 E-value=0.12 Score=44.85 Aligned_cols=49 Identities=14% Similarity=0.024 Sum_probs=39.9
Q ss_pred CeEEEccceEEEEEeccCCCCCeEEEEEEEe--CCeEEEEEeceEEEecCCcccC
Q psy8943 28 NLHIAMETQALRLLFDKSGPVPKAVGIEILR--DGRKHIIRAKKEIISSAGAINS 80 (134)
Q Consensus 28 nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~--~g~~~~~~a~~~vIlaaGai~t 80 (134)
+++|+.++.+++|+.+ +++++.||.+.+ ++....+.+ +.||||+|.+..
T Consensus 151 ~i~i~~~~~~~~Li~~---~~g~v~Gv~~~~~~~g~~~~i~A-kaVILATGG~~~ 201 (589)
T PRK08641 151 LVTKYEGWEFLGAVLD---DEGVCRGIVAQDLFTMEIESFPA-DAVIMATGGPGI 201 (589)
T ss_pred CcEEEeeEEEEEEEEC---CCCEEEEEEEEECCCCcEEEEEC-CEEEECCCCCcC
Confidence 4899999999999875 246999999876 455567777 799999998764
No 58
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=94.83 E-value=0.12 Score=48.32 Aligned_cols=54 Identities=20% Similarity=0.279 Sum_probs=43.1
Q ss_pred CCeEEEccceEEEEEeccCC--CC---CeEEEEEEEe----CCeEEEEEeceEEEecCCcccCC
Q psy8943 27 KNLHIAMETQALRLLFDKSG--PV---PKAVGIEILR----DGRKHIIRAKKEIISSAGAINSP 81 (134)
Q Consensus 27 ~nl~i~t~~~V~ri~~~~~~--~~---~~a~gV~~~~----~g~~~~~~a~~~vIlaaGai~tP 81 (134)
.+++|+.++.|++|+.+..+ ++ ++|+||.+.+ +|....+.| +-||||+|.+..-
T Consensus 560 ~gv~i~~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~~~~~~g~~~~i~A-kaVILATGGf~~N 622 (1167)
T PTZ00306 560 GRVTIMTETTVTSLLSESSARPDGVREIRVTGVRYKQASDASGQVMDLLA-DAVILATGGFSND 622 (1167)
T ss_pred CCcEEEECCEEEEEEecCCcccCCCccceEEEEEEEecccCCCcEEEEEe-ceEEEecCCcccC
Confidence 58999999999999986321 11 3899999986 466778888 7999999998764
No 59
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.75 E-value=0.14 Score=44.03 Aligned_cols=50 Identities=20% Similarity=0.238 Sum_probs=40.6
Q ss_pred cCCCeEEEccceEEEEEeccCCCCCeEEEEEEEe--CCeEEEEEeceEEEecCCccc
Q psy8943 25 LRKNLHIAMETQALRLLFDKSGPVPKAVGIEILR--DGRKHIIRAKKEIISSAGAIN 79 (134)
Q Consensus 25 ~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~--~g~~~~~~a~~~vIlaaGai~ 79 (134)
...+++++.++.|++|+.+ +++++||.+.+ ++....+.+ +.||||+|+..
T Consensus 149 ~~~gv~i~~~~~v~~Li~~----~g~v~Gv~~~~~~~g~~~~i~A-k~VIlATGG~~ 200 (577)
T PRK06069 149 RFDNIHFYDEHFVTSLIVE----NGVFKGVTAIDLKRGEFKVFQA-KAGIIATGGAG 200 (577)
T ss_pred hcCCCEEEECCEEEEEEEE----CCEEEEEEEEEcCCCeEEEEEC-CcEEEcCchhc
Confidence 3468999999999999876 36899998765 565567888 79999999874
No 60
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=94.74 E-value=0.15 Score=44.32 Aligned_cols=50 Identities=16% Similarity=0.179 Sum_probs=39.6
Q ss_pred cCCCeEEEccceEEEEEeccCCCCCeEEEEEEEe--CCeEEEEEeceEEEecCCccc
Q psy8943 25 LRKNLHIAMETQALRLLFDKSGPVPKAVGIEILR--DGRKHIIRAKKEIISSAGAIN 79 (134)
Q Consensus 25 ~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~--~g~~~~~~a~~~vIlaaGai~ 79 (134)
+.++++|+.++.|+.|+.+ ++++.||.+.+ ++....+.+ +.||||+|++.
T Consensus 144 ~~ggV~i~~~~~v~~Li~~----~g~v~Gv~~~~~~~g~~~~i~A-kaVILATGG~~ 195 (608)
T PRK06854 144 KALGDNVLNRVFITDLLVD----DNRIAGAVGFSVRENKFYVFKA-KAVIVATGGAA 195 (608)
T ss_pred hcCCCEEEeCCEEEEEEEe----CCEEEEEEEEEccCCcEEEEEC-CEEEECCCchh
Confidence 3456999999999999876 35899997654 555567888 79999999875
No 61
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=94.57 E-value=0.045 Score=42.59 Aligned_cols=55 Identities=35% Similarity=0.441 Sum_probs=39.4
Q ss_pred cCCCeEEEccceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEeceEEEecCCcccCCchhhhccc
Q psy8943 25 LRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLLMVSGG 89 (134)
Q Consensus 25 ~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~g~~~~~~a~~~vIlaaGai~tP~lLl~SGi 89 (134)
.+.+++|++++.|++|..+ +++++||... +| .+++ +.||+|+|+ .+++|+..+|+
T Consensus 158 ~~~Gv~i~~~~~V~~i~~~----~~~v~gv~~~-~g---~i~a-d~vV~a~G~-~s~~l~~~~~~ 212 (358)
T PF01266_consen 158 QRAGVEIRTGTEVTSIDVD----GGRVTGVRTS-DG---EIRA-DRVVLAAGA-WSPQLLPLLGL 212 (358)
T ss_dssp HHTT-EEEESEEEEEEEEE----TTEEEEEEET-TE---EEEE-CEEEE--GG-GHHHHHHTTTT
T ss_pred HHhhhhccccccccchhhc----cccccccccc-cc---cccc-ceeEecccc-cceeeeecccc
Confidence 4458999999999999988 3577777754 33 3777 799999996 67777777765
No 62
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=94.44 E-value=0.12 Score=43.36 Aligned_cols=78 Identities=18% Similarity=0.175 Sum_probs=54.1
Q ss_pred cCCCeEEEccceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEeceEEEecCCcccCCchhhhc-cccccc-ceeEEecCC
Q psy8943 25 LRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLLMVS-GGSSVL-NAMIYVRGN 102 (134)
Q Consensus 25 ~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~g~~~~~~a~~~vIlaaGai~tP~lLl~S-Gig~~~-n~~~~~~g~ 102 (134)
.+.+.+++.++.|.++.++ ++++++|... ++....+.+ +.||||+|+..|..|+... +|.... |+-+. .
T Consensus 274 ~~~Gg~il~g~~V~~i~~~----~~~v~~V~t~-~g~~~~l~A-D~vVLAaGaw~S~gL~a~l~~i~Epif~L~v~---~ 344 (419)
T TIGR03378 274 EQLGGVMLPGDRVLRAEFE----GNRVTRIHTR-NHRDIPLRA-DHFVLASGSFFSNGLVAEFDKIYEPIFGLDVL---Q 344 (419)
T ss_pred HHCCCEEEECcEEEEEEee----CCeEEEEEec-CCccceEEC-CEEEEccCCCcCHHHHhhcCceeeeccCCCcC---C
Confidence 3457899999999999887 3577776543 333446788 6899999999887776553 555443 55544 4
Q ss_pred CCChhHHHh
Q psy8943 103 KNDYDQWER 111 (134)
Q Consensus 103 ~~d~~~w~~ 111 (134)
+.|.+.|.+
T Consensus 345 ~~~r~~W~~ 353 (419)
T TIGR03378 345 LPDRDQWYQ 353 (419)
T ss_pred Ccchhhhcc
Confidence 566688864
No 63
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=94.39 E-value=0.23 Score=41.49 Aligned_cols=81 Identities=16% Similarity=0.174 Sum_probs=54.0
Q ss_pred hhhcCCCeEEEccceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEeceEEEecCCcccCCchhhhc-cccccc-ceeEEe
Q psy8943 22 PIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLLMVS-GGSSVL-NAMIYV 99 (134)
Q Consensus 22 ~~~~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~g~~~~~~a~~~vIlaaGai~tP~lLl~S-Gig~~~-n~~~~~ 99 (134)
....+.+++|++++.|.++..+ +++++.|. ..++....+.+ +.||+|+|.+.+.-|.-.. +|.... |+-+.
T Consensus 267 ~~l~~~Gv~I~~g~~V~~v~~~----~~~V~~v~-~~~g~~~~i~A-D~VVLAtGrf~s~GL~a~~~~i~Epif~l~v~- 339 (422)
T PRK05329 267 RAFERLGGRIMPGDEVLGAEFE----GGRVTAVW-TRNHGDIPLRA-RHFVLATGSFFSGGLVAERDGIREPIFGLDVL- 339 (422)
T ss_pred HHHHhCCCEEEeCCEEEEEEEe----CCEEEEEE-eeCCceEEEEC-CEEEEeCCCcccCceeccCCccccccCCCCCC-
Confidence 3344567999999999999876 24565554 34566667888 7999999988666554332 455443 55443
Q ss_pred cCCCCChhHHHh
Q psy8943 100 RGNKNDYDQWER 111 (134)
Q Consensus 100 ~g~~~d~~~w~~ 111 (134)
.+.|.+.|.+
T Consensus 340 --~~~~r~~w~~ 349 (422)
T PRK05329 340 --QPADRADWYQ 349 (422)
T ss_pred --CCCchhhhhh
Confidence 5566677864
No 64
>PRK08071 L-aspartate oxidase; Provisional
Probab=93.84 E-value=0.16 Score=43.14 Aligned_cols=49 Identities=10% Similarity=0.289 Sum_probs=40.4
Q ss_pred CCeEEEccceEEEEEeccCCCCCeEEEEEEEe-CCeEEEEEeceEEEecCCcccC
Q psy8943 27 KNLHIAMETQALRLLFDKSGPVPKAVGIEILR-DGRKHIIRAKKEIISSAGAINS 80 (134)
Q Consensus 27 ~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~-~g~~~~~~a~~~vIlaaGai~t 80 (134)
.+++|+.++.|+.|+.+ ++++.||.+.+ ++....+.+ +.||||+|++..
T Consensus 142 ~gV~i~~~~~v~~Li~~----~g~v~Gv~~~~~~g~~~~i~A-k~VVlATGG~~~ 191 (510)
T PRK08071 142 PHVTVVEQEMVIDLIIE----NGRCIGVLTKDSEGKLKRYYA-DYVVLASGGCGG 191 (510)
T ss_pred cCCEEEECeEhhheeec----CCEEEEEEEEECCCcEEEEEc-CeEEEecCCCcc
Confidence 58999999999999765 36899998876 566667888 799999998764
No 65
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=93.64 E-value=0.25 Score=41.98 Aligned_cols=73 Identities=19% Similarity=0.202 Sum_probs=50.4
Q ss_pred hhhhhhcCCCeEEEccceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEeceEEEecCCcccCCchhhhcccccccce
Q psy8943 19 FLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLLMVSGGSSVLNA 95 (134)
Q Consensus 19 ~l~~~~~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~g~~~~~~a~~~vIlaaGai~tP~lLl~SGig~~~n~ 95 (134)
++.-+...++++|..++.|+.|.-.. ++.....|.-..++....+++ +-|++.||+- +=.||+.|||.....|
T Consensus 187 l~~~l~~~~~~~~~~~~eV~~i~r~~--dg~W~v~~~~~~~~~~~~v~a-~FVfvGAGG~-aL~LLqksgi~e~~gy 259 (488)
T PF06039_consen 187 LVEYLQKQKGFELHLNHEVTDIKRNG--DGRWEVKVKDLKTGEKREVRA-KFVFVGAGGG-ALPLLQKSGIPEGKGY 259 (488)
T ss_pred HHHHHHhCCCcEEEecCEeCeeEECC--CCCEEEEEEecCCCCeEEEEC-CEEEECCchH-hHHHHHHcCChhhccc
Confidence 33334456799999999999997652 222444444444677889999 6787777763 5567888999665544
No 66
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=93.58 E-value=0.25 Score=40.75 Aligned_cols=56 Identities=14% Similarity=0.069 Sum_probs=40.6
Q ss_pred hcCCCeEEEccceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEeceEEEecCCcccCCchh
Q psy8943 24 RLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLL 84 (134)
Q Consensus 24 ~~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~g~~~~~~a~~~vIlaaGai~tP~lL 84 (134)
+.+.+++|++++.|++|+.+. ++++++||....++ ..+.+ +.||||+|.+....-|
T Consensus 133 a~~~Gv~i~~~~~v~~l~~~~--~~g~v~gv~~~~~~--~~i~a-k~VIlAtGG~~~n~~~ 188 (432)
T TIGR02485 133 AERLGVEIRYGIAVDRIPPEA--FDGAHDGPLTTVGT--HRITT-QALVLAAGGLGANRDW 188 (432)
T ss_pred HHHcCCEEEeCCEEEEEEecC--CCCeEEEEEEcCCc--EEEEc-CEEEEcCCCcccCHHH
Confidence 345689999999999998652 13578888764333 46677 7999999988765433
No 67
>PRK07804 L-aspartate oxidase; Provisional
Probab=93.46 E-value=0.28 Score=42.02 Aligned_cols=51 Identities=20% Similarity=0.277 Sum_probs=39.1
Q ss_pred CCCeEEEccceEEEEEeccCCCCCeEEEEEEEe-----CCeEEEEEeceEEEecCCcccC
Q psy8943 26 RKNLHIAMETQALRLLFDKSGPVPKAVGIEILR-----DGRKHIIRAKKEIISSAGAINS 80 (134)
Q Consensus 26 ~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~-----~g~~~~~~a~~~vIlaaGai~t 80 (134)
+.+++|+.++.|+.|+.+ +++++.||.+.+ .+....+.+ +.||+|+|+...
T Consensus 156 ~~gV~i~~~~~v~~Li~~---~~g~v~Gv~~~~~~~~~~~g~~~i~A-k~VIlATGG~~~ 211 (541)
T PRK07804 156 ADPLDIREHALALDLLTD---GTGAVAGVTLHVLGEGSPDGVGAVHA-PAVVLATGGLGQ 211 (541)
T ss_pred hCCCEEEECeEeeeeEEc---CCCeEEEEEEEeccCCCCCcEEEEEc-CeEEECCCCCCC
Confidence 445999999999999876 235899998762 233456777 799999998753
No 68
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=93.34 E-value=0.12 Score=37.59 Aligned_cols=62 Identities=23% Similarity=0.337 Sum_probs=36.7
Q ss_pred hhhhhhhcCCCeEEEccceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEeceEEEecCCcccCCchhhhcc
Q psy8943 18 AFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLLMVSG 88 (134)
Q Consensus 18 ~~l~~~~~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~g~~~~~~a~~~vIlaaGai~tP~lLl~SG 88 (134)
.|+...+++-++.+..++.|+++..+. ++ --|.+. ++ ..+++ +.||+|.|....|+.+..-|
T Consensus 86 ~yl~~~~~~~~l~i~~~~~V~~v~~~~---~~--w~v~~~-~~--~~~~a-~~VVlAtG~~~~p~~p~~~g 147 (203)
T PF13738_consen 86 DYLQEYAERFGLEIRFNTRVESVRRDG---DG--WTVTTR-DG--RTIRA-DRVVLATGHYSHPRIPDIPG 147 (203)
T ss_dssp HHHHHHHHHTTGGEETS--EEEEEEET---TT--EEEEET-TS---EEEE-EEEEE---SSCSB---S-TT
T ss_pred HHHHHHHhhcCcccccCCEEEEEEEec---cE--EEEEEE-ec--ceeee-eeEEEeeeccCCCCcccccc
Confidence 566666666788899999999998872 23 123332 34 46667 89999999999999887666
No 69
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=93.15 E-value=0.37 Score=42.17 Aligned_cols=51 Identities=24% Similarity=0.288 Sum_probs=39.9
Q ss_pred CCeEEEccceEEEEEeccCCCCCeEEEEEEEe--CCeEEEEEeceEEEecCCccc
Q psy8943 27 KNLHIAMETQALRLLFDKSGPVPKAVGIEILR--DGRKHIIRAKKEIISSAGAIN 79 (134)
Q Consensus 27 ~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~--~g~~~~~~a~~~vIlaaGai~ 79 (134)
.+++|+.++.|++|+.+.. .++++.||.+.+ ++....+.+ +.||||+|.+.
T Consensus 139 ~~~~i~~~~~v~~Ll~d~~-~~GrV~Gv~~~~~~~g~~~~i~A-kaVVLATGG~~ 191 (614)
T TIGR02061 139 ALGDIFERIFIVKLLLDKN-TPNRIAGAVGFNVRANEVHVFKA-KTVIVAAGGAV 191 (614)
T ss_pred CCCeEEcccEEEEEEecCC-CCCeEEEEEEEEeCCCcEEEEEC-CEEEECCCccc
Confidence 3479999999999988621 125899998765 566677888 79999999875
No 70
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=93.13 E-value=0.34 Score=44.03 Aligned_cols=48 Identities=25% Similarity=0.366 Sum_probs=40.0
Q ss_pred CCeEEEccceEEEEEeccCCCCCeEEEEEEEe--CCeEEEEEeceEEEecCCccc
Q psy8943 27 KNLHIAMETQALRLLFDKSGPVPKAVGIEILR--DGRKHIIRAKKEIISSAGAIN 79 (134)
Q Consensus 27 ~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~--~g~~~~~~a~~~vIlaaGai~ 79 (134)
.++.+.+++.+.+|+.+ ++++.||.+.+ +|....+.+ +.||||+|++.
T Consensus 156 ~~i~~~~~~~~~~Li~~----~g~v~Gv~~~~~~~g~~~~i~A-kaVILATGG~g 205 (897)
T PRK13800 156 ERIRIENRLMPVRVLTE----GGRAVGAAALNTRTGEFVTVGA-KAVILATGPCG 205 (897)
T ss_pred CCcEEEeceeeEEEEee----CCEEEEEEEEecCCCcEEEEEC-CEEEECCCccc
Confidence 47999999999999875 36899998765 677778888 89999999875
No 71
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=92.85 E-value=0.42 Score=40.45 Aligned_cols=59 Identities=19% Similarity=0.258 Sum_probs=44.6
Q ss_pred cCCCeEEEccceEEEEEeccCCCCCeEEEEEEEe--CCeEEEEEeceEEEecCCcccCCchhhhccc
Q psy8943 25 LRKNLHIAMETQALRLLFDKSGPVPKAVGIEILR--DGRKHIIRAKKEIISSAGAINSPQLLMVSGG 89 (134)
Q Consensus 25 ~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~--~g~~~~~~a~~~vIlaaGai~tP~lLl~SGi 89 (134)
...+++|++++.|+.|..+ ++++.+|.+.+ ++....+.+ +.||.|+|+. +..|+...|+
T Consensus 139 ~~~Ga~i~~~t~V~~i~~~----~~~v~gv~v~~~~~g~~~~i~a-~~VVnAaG~w-a~~l~~~~g~ 199 (516)
T TIGR03377 139 QEHGARIFTYTKVTGLIRE----GGRVTGVKVEDHKTGEEERIEA-QVVINAAGIW-AGRIAEYAGL 199 (516)
T ss_pred HHcCCEEEcCcEEEEEEEE----CCEEEEEEEEEcCCCcEEEEEc-CEEEECCCcc-hHHHHHhcCC
Confidence 4567999999999999865 35788998865 465667888 7999999965 5555544453
No 72
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=92.71 E-value=0.45 Score=40.79 Aligned_cols=55 Identities=15% Similarity=0.225 Sum_probs=41.8
Q ss_pred cCCCeEEEccceEEEEEeccCCCCCeEEEEEEEe--CCeEEEEEeceEEEecCCcccCCchhh
Q psy8943 25 LRKNLHIAMETQALRLLFDKSGPVPKAVGIEILR--DGRKHIIRAKKEIISSAGAINSPQLLM 85 (134)
Q Consensus 25 ~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~--~g~~~~~~a~~~vIlaaGai~tP~lLl 85 (134)
...++++++++.|+.|..+ ++++++|.+.+ ++....+.+ +.||.|+|+. +..|+.
T Consensus 160 ~~~Ga~i~~~t~V~~i~~~----~~~v~gv~v~d~~~g~~~~i~A-~~VVnAaG~w-a~~l~~ 216 (546)
T PRK11101 160 KEHGAQILTYHEVTGLIRE----GDTVCGVRVRDHLTGETQEIHA-PVVVNAAGIW-GQHIAE 216 (546)
T ss_pred HhCCCEEEeccEEEEEEEc----CCeEEEEEEEEcCCCcEEEEEC-CEEEECCChh-HHHHHH
Confidence 4567999999999999775 35888998865 455567888 7999999975 344443
No 73
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=92.53 E-value=0.51 Score=41.26 Aligned_cols=59 Identities=15% Similarity=0.273 Sum_probs=43.0
Q ss_pred cCCCeEEEccceEEEEEeccCCCCCeEEEEEEEe--CCeEEEEEeceEEEecCCcccCCchhhhc
Q psy8943 25 LRKNLHIAMETQALRLLFDKSGPVPKAVGIEILR--DGRKHIIRAKKEIISSAGAINSPQLLMVS 87 (134)
Q Consensus 25 ~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~--~g~~~~~~a~~~vIlaaGai~tP~lLl~S 87 (134)
...+++|+.++.|+.|..+. .++++.+|.+.+ ++..+.+.+ +.||+|+|+. +..++...
T Consensus 243 ~~~Ga~i~~~~~V~~l~~~~--~~g~v~gV~v~d~~tg~~~~i~a-~~VVnAaGaw-s~~l~~~~ 303 (627)
T PLN02464 243 ALAGAAVLNYAEVVSLIKDE--STGRIVGARVRDNLTGKEFDVYA-KVVVNAAGPF-CDEVRKMA 303 (627)
T ss_pred HhCCcEEEeccEEEEEEEec--CCCcEEEEEEEECCCCcEEEEEe-CEEEECCCHh-HHHHHHhc
Confidence 45679999999999997652 135788988865 555667888 7999999976 34444433
No 74
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=89.88 E-value=0.72 Score=39.81 Aligned_cols=48 Identities=23% Similarity=0.272 Sum_probs=41.3
Q ss_pred cCCCeEEEccceEEEEEeccCCCCCeEEEEEEEe--CCeEEEEEeceEEEecCCcc
Q psy8943 25 LRKNLHIAMETQALRLLFDKSGPVPKAVGIEILR--DGRKHIIRAKKEIISSAGAI 78 (134)
Q Consensus 25 ~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~--~g~~~~~~a~~~vIlaaGai 78 (134)
...+.++++.+.|+.+..+ ++ +.||++.+ +|+.+.+++ +.||-|+|..
T Consensus 175 ~~~Ga~il~~~~v~~~~re----~~-v~gV~~~D~~tg~~~~ira-~~VVNAaGpW 224 (532)
T COG0578 175 AEHGAEILTYTRVESLRRE----GG-VWGVEVEDRETGETYEIRA-RAVVNAAGPW 224 (532)
T ss_pred Hhcccchhhcceeeeeeec----CC-EEEEEEEecCCCcEEEEEc-CEEEECCCcc
Confidence 3467899999999999887 34 99999997 688999999 7999999974
No 75
>PRK06185 hypothetical protein; Provisional
Probab=89.83 E-value=1.9 Score=34.93 Aligned_cols=49 Identities=16% Similarity=0.218 Sum_probs=36.7
Q ss_pred cCCCeEEEccceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEeceEEEecCCcc
Q psy8943 25 LRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAI 78 (134)
Q Consensus 25 ~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~g~~~~~~a~~~vIlaaGai 78 (134)
..++++++.++.|+.+..+ ++.+++|.+...+....+.+ +.||.|.|+-
T Consensus 120 ~~~~v~i~~~~~v~~~~~~----~~~v~~v~~~~~~g~~~i~a-~~vI~AdG~~ 168 (407)
T PRK06185 120 AYPNFTLRMGAEVTGLIEE----GGRVTGVRARTPDGPGEIRA-DLVVGADGRH 168 (407)
T ss_pred hCCCcEEEeCCEEEEEEEe----CCEEEEEEEEcCCCcEEEEe-CEEEECCCCc
Confidence 3468999999999999776 35677887765333356778 7888888864
No 76
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=89.51 E-value=2.1 Score=36.49 Aligned_cols=60 Identities=20% Similarity=0.231 Sum_probs=39.7
Q ss_pred CCCeEEEccceEEEEEeccCCCCCeEEEEEEEe--CCeEEEEEeceEEEecCCcccCCchhhhccccc
Q psy8943 26 RKNLHIAMETQALRLLFDKSGPVPKAVGIEILR--DGRKHIIRAKKEIISSAGAINSPQLLMVSGGSS 91 (134)
Q Consensus 26 ~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~--~g~~~~~~a~~~vIlaaGai~tP~lLl~SGig~ 91 (134)
.++++|+.++.|+.|..+. ++.+ .|...+ +|....+.+ +.||+|||+- +..|+..+|+..
T Consensus 196 ~Ggv~i~~~teV~~I~~~~---dg~~-~v~~~~~~~G~~~~i~A-~~VVvaAGg~-s~~L~~~~Gi~~ 257 (494)
T PRK05257 196 QGNFELQLGHEVRDIKRND---DGSW-TVTVKDLKTGEKRTVRA-KFVFIGAGGG-ALPLLQKSGIPE 257 (494)
T ss_pred CCCeEEEeCCEEEEEEECC---CCCE-EEEEEEcCCCceEEEEc-CEEEECCCcc-hHHHHHHcCCCc
Confidence 3459999999999987642 2322 233332 344345778 7999999985 556676777764
No 77
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=88.81 E-value=1.8 Score=36.01 Aligned_cols=52 Identities=21% Similarity=0.305 Sum_probs=37.4
Q ss_pred hcCCCeEEEccceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEeceEEEecCCcccCCchh
Q psy8943 24 RLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLL 84 (134)
Q Consensus 24 ~~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~g~~~~~~a~~~vIlaaGai~tP~lL 84 (134)
...+|++|+ +..|+.|..+ ++++.||... +|. .+.+ +.||+|+|.+....+.
T Consensus 106 ~~~~nl~i~-~~~V~~l~~e----~~~v~GV~~~-~g~--~~~a-~~vVlaTGtfl~G~~~ 157 (392)
T PF01134_consen 106 ESHPNLTII-QGEVTDLIVE----NGKVKGVVTK-DGE--EIEA-DAVVLATGTFLNGCIH 157 (392)
T ss_dssp HTSTTEEEE-ES-EEEEEEC----TTEEEEEEET-TSE--EEEE-CEEEE-TTTGBTSEEE
T ss_pred hcCCCeEEE-EcccceEEec----CCeEEEEEeC-CCC--EEec-CEEEEecccccCceee
Confidence 456999997 5789999887 4699998775 554 4677 7999999995444433
No 78
>PLN02661 Putative thiazole synthesis
Probab=88.54 E-value=1.3 Score=36.45 Aligned_cols=52 Identities=21% Similarity=0.268 Sum_probs=39.0
Q ss_pred hhcCCCeEEEccceEEEEEeccCCCCCeEEEEEEE------e-CC----eEEEEEeceEEEecCCccc
Q psy8943 23 IRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEIL------R-DG----RKHIIRAKKEIISSAGAIN 79 (134)
Q Consensus 23 ~~~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~------~-~g----~~~~~~a~~~vIlaaGai~ 79 (134)
+..++|++|+.++.|+.|+.+ ++++.||.+. + .+ ....+++ +.||+|+|...
T Consensus 182 a~~~~gVkI~~~t~V~DLI~~----~grVaGVVvnw~~v~~~~~~~s~~dp~~I~A-kaVVlATGh~g 244 (357)
T PLN02661 182 LLARPNVKLFNAVAAEDLIVK----GDRVGGVVTNWALVAQNHDTQSCMDPNVMEA-KVVVSSCGHDG 244 (357)
T ss_pred HHhcCCCEEEeCeEeeeEEec----CCEEEEEEeecchhhhccCCCCccceeEEEC-CEEEEcCCCCC
Confidence 445689999999999999887 3689998752 1 11 2346788 89999999643
No 79
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=88.35 E-value=0.14 Score=42.43 Aligned_cols=52 Identities=19% Similarity=0.330 Sum_probs=0.0
Q ss_pred hhhhhcCCCeEEEccceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEeceEEEecCC
Q psy8943 20 LRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAG 76 (134)
Q Consensus 20 l~~~~~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~g~~~~~~a~~~vIlaaG 76 (134)
+...+...+++|+.++.|..+..+ ++++++|.+.+.+...+++| +.||-|+|
T Consensus 96 l~~~l~e~gv~v~~~t~v~~v~~~----~~~i~~V~~~~~~g~~~i~A-~~~IDaTG 147 (428)
T PF12831_consen 96 LDEMLAEAGVEVLLGTRVVDVIRD----GGRITGVIVETKSGRKEIRA-KVFIDATG 147 (428)
T ss_dssp ---------------------------------------------------------
T ss_pred cccccccccccccccccccccccc----cccccccccccccccccccc-cccccccc
Confidence 433345679999999999999887 46899999987444778899 79999988
No 80
>PLN02487 zeta-carotene desaturase
Probab=88.15 E-value=2 Score=37.32 Aligned_cols=61 Identities=16% Similarity=0.247 Sum_probs=42.1
Q ss_pred hcCCCeEEEccceEEEEEeccCCCC-CeEEEEEEEeCCeEEEEEeceEEEecCCcccCCchhh
Q psy8943 24 RLRKNLHIAMETQALRLLFDKSGPV-PKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLLM 85 (134)
Q Consensus 24 ~~~~nl~i~t~~~V~ri~~~~~~~~-~~a~gV~~~~~g~~~~~~a~~~vIlaaGai~tP~lLl 85 (134)
+++.+.+|.+++.|.+|.++.++++ .+++||.+..++....+.+ +.||++++.-...+||-
T Consensus 305 L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~a-D~VV~A~p~~~~~~Llp 366 (569)
T PLN02487 305 ITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKA-DAYVAACDVPGIKRLLP 366 (569)
T ss_pred HHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEEC-CEEEECCCHHHHHHhCC
Confidence 3567899999999999999743222 2589998853333334566 78999998765555553
No 81
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=87.83 E-value=3.3 Score=35.52 Aligned_cols=55 Identities=18% Similarity=0.327 Sum_probs=43.0
Q ss_pred hcCCCeEEEccceEEEEEeccCCCCCeEEEEEEEeCCeEE--EEEeceEEEecCCcc
Q psy8943 24 RLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKH--IIRAKKEIISSAGAI 78 (134)
Q Consensus 24 ~~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~g~~~--~~~a~~~vIlaaGai 78 (134)
+...++++..+++|+.|.++..++..+|+++.+..+|... .+...+.|++.-|.+
T Consensus 217 L~~~GV~F~~~t~V~di~~~~~~~~~~~~~i~~~~~g~~~~i~l~~~DlV~vT~GS~ 273 (500)
T PF06100_consen 217 LKSQGVDFRFNTKVTDIDFDITGDKKTATRIHIEQDGKEETIDLGPDDLVFVTNGSM 273 (500)
T ss_pred HHHCCCEEECCCEEEEEEEEccCCCeeEEEEEEEcCCCeeEEEeCCCCEEEEECCcc
Confidence 3567899999999999999876555588999998877654 455667888888865
No 82
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=87.69 E-value=1.4 Score=36.89 Aligned_cols=55 Identities=9% Similarity=0.094 Sum_probs=39.2
Q ss_pred cCCCeEEEccceEEEEEeccCCCCCeEEEEEEEeC--CeEEEEEeceEEEecCCcccCCchh
Q psy8943 25 LRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRD--GRKHIIRAKKEIISSAGAINSPQLL 84 (134)
Q Consensus 25 ~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~--g~~~~~~a~~~vIlaaGai~tP~lL 84 (134)
...+.+|.+++.|++|+.+ ++++++|...+. +....+.+ +.||+++....+..||
T Consensus 243 ~~~G~~i~~~~~V~~I~~~----~~~~~gv~~~~~~~~~~~~~~a-d~VI~~~~~~~~~~ll 299 (492)
T TIGR02733 243 KRDGGNLLTGQRVTAIHTK----GGRAGWVVVVDSRKQEDLNVKA-DDVVANLPPQSLLELL 299 (492)
T ss_pred HhcCCEEeCCceEEEEEEe----CCeEEEEEEecCCCCceEEEEC-CEEEECCCHHHHHHhc
Confidence 3457899999999999887 357788876643 22245677 6899998875555544
No 83
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=87.58 E-value=1.5 Score=34.08 Aligned_cols=50 Identities=18% Similarity=0.291 Sum_probs=37.1
Q ss_pred cCCCeEEEccceEEEEEeccCCCCCeEEEEEEEe-----CC---eEEEEEeceEEEecCCcc
Q psy8943 25 LRKNLHIAMETQALRLLFDKSGPVPKAVGIEILR-----DG---RKHIIRAKKEIISSAGAI 78 (134)
Q Consensus 25 ~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~-----~g---~~~~~~a~~~vIlaaGai 78 (134)
...+++|+.++.|+.|..+. ++++.||.+.. .+ ....+++ +.||.|+|.-
T Consensus 115 ~~~Gv~I~~~t~V~dl~~~~---~g~V~Gvv~~~~~v~~~g~~~~~~~i~A-k~VI~ATG~~ 172 (257)
T PRK04176 115 IDAGAKIFNGVSVEDVILRE---DPRVAGVVINWTPVEMAGLHVDPLTIEA-KAVVDATGHD 172 (257)
T ss_pred HHcCCEEEcCceeceeeEeC---CCcEEEEEEccccccccCCCCCcEEEEc-CEEEEEeCCC
Confidence 45689999999999998762 34788887642 11 3467888 7999999964
No 84
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=87.27 E-value=1.1 Score=37.53 Aligned_cols=51 Identities=25% Similarity=0.371 Sum_probs=37.8
Q ss_pred hcCCCeEEEccceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEeceEEEecCCcccCCc
Q psy8943 24 RLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQ 82 (134)
Q Consensus 24 ~~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~g~~~~~~a~~~vIlaaGai~tP~ 82 (134)
+.+.+.+|++++.|++|..+ ++++.+|... +|. .+.+ +.||+++|...+-.
T Consensus 239 ~~~~G~~i~~~~~V~~I~~~----~~~~~gv~~~-~g~--~~~a-d~vV~a~~~~~~~~ 289 (493)
T TIGR02730 239 LEKHGGQIRYRARVTKIILE----NGKAVGVKLA-DGE--KIYA-KRIVSNATRWDTFG 289 (493)
T ss_pred HHHCCCEEEeCCeeeEEEec----CCcEEEEEeC-CCC--EEEc-CEEEECCChHHHHH
Confidence 34567999999999999887 3578888765 343 3567 68999998765543
No 85
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=87.25 E-value=3.8 Score=35.07 Aligned_cols=62 Identities=18% Similarity=0.089 Sum_probs=40.2
Q ss_pred cCCCeEEEccceEEEEEeccCCCCCeEEEEEEE--eCCeEEEEEeceEEEecCCcccCCchhhhcccccc
Q psy8943 25 LRKNLHIAMETQALRLLFDKSGPVPKAVGIEIL--RDGRKHIIRAKKEIISSAGAINSPQLLMVSGGSSV 92 (134)
Q Consensus 25 ~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~--~~g~~~~~~a~~~vIlaaGai~tP~lLl~SGig~~ 92 (134)
+.++++|++++.|+.|..+. ++.. .|.+. .++....+.+ +.||+|||+- +-+|+..+|+...
T Consensus 196 ~~~Gv~i~~~~~V~~I~~~~---d~~w-~v~v~~t~~g~~~~i~A-d~VV~AAGaw-S~~La~~~Gi~~~ 259 (497)
T PRK13339 196 SHPNAQVKYNHEVVDLERLS---DGGW-EVTVKDRNTGEKREQVA-DYVFIGAGGG-AIPLLQKSGIPES 259 (497)
T ss_pred hCCCcEEEeCCEEEEEEECC---CCCE-EEEEEecCCCceEEEEc-CEEEECCCcc-hHHHHHHcCCCcc
Confidence 45689999999999986541 2222 13322 2343335777 7999999974 5667777787643
No 86
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=86.70 E-value=1.9 Score=36.33 Aligned_cols=60 Identities=13% Similarity=0.246 Sum_probs=40.7
Q ss_pred cCCCeEEEccceEEEEEeccCCCCC-eEEEEEEEeCCeEEEEEeceEEEecCCcccCCchhh
Q psy8943 25 LRKNLHIAMETQALRLLFDKSGPVP-KAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLLM 85 (134)
Q Consensus 25 ~~~nl~i~t~~~V~ri~~~~~~~~~-~a~gV~~~~~g~~~~~~a~~~vIlaaGai~tP~lLl 85 (134)
.+.+.+|.+++.|++|..+..+++. ++++|.+.+.+....+.+ +.||+|...-...+||-
T Consensus 230 ~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~a-D~VVlA~p~~~~~~Ll~ 290 (474)
T TIGR02732 230 EARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKA-DAYVAACDVPGIKRLLP 290 (474)
T ss_pred HHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEEC-CEEEECCChHHHHhhCC
Confidence 4467899999999999886321122 478888753211123666 68999999877776664
No 87
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=86.59 E-value=2.1 Score=36.01 Aligned_cols=58 Identities=17% Similarity=0.251 Sum_probs=41.8
Q ss_pred cCCCeEEEccceEEEEEeccCCCCCeEEEEEEE--eCCeEEEEEeceEEEecCCcccCCchhhhcccccc
Q psy8943 25 LRKNLHIAMETQALRLLFDKSGPVPKAVGIEIL--RDGRKHIIRAKKEIISSAGAINSPQLLMVSGGSSV 92 (134)
Q Consensus 25 ~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~--~~g~~~~~~a~~~vIlaaGai~tP~lLl~SGig~~ 92 (134)
+..+.+|..++.|+.|...+ ++ +.+. .+|... +++ +-||.|||. .+-.|+.++|+...
T Consensus 164 ~~~g~~i~ln~eV~~i~~~~---dg----~~~~~~~~g~~~-~~a-k~Vin~AGl-~Ad~la~~~g~~~~ 223 (429)
T COG0579 164 QANGVELRLNTEVTGIEKQS---DG----VFVLNTSNGEET-LEA-KFVINAAGL-YADPLAQMAGIPED 223 (429)
T ss_pred HHcCCEEEecCeeeEEEEeC---Cc----eEEEEecCCcEE-EEe-eEEEECCch-hHHHHHHHhCCCcc
Confidence 44599999999999998763 22 3332 255555 888 789999885 56678888888773
No 88
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=86.04 E-value=2.4 Score=36.17 Aligned_cols=53 Identities=23% Similarity=0.233 Sum_probs=37.1
Q ss_pred CeEEEccceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEeceEEEecCCcccCCchhhhcccc
Q psy8943 28 NLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLLMVSGGS 90 (134)
Q Consensus 28 nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~g~~~~~~a~~~vIlaaGai~tP~lLl~SGig 90 (134)
+++|.+++.|+.|..+. +....|.. .+| .+++ +.||+|||+. +..|+..+|++
T Consensus 231 ~v~i~~~t~V~~I~~~~----~~~~~V~T-~~G---~i~A-~~VVvaAG~~-S~~La~~~Gi~ 283 (497)
T PTZ00383 231 KISINLNTEVLNIERSN----DSLYKIHT-NRG---EIRA-RFVVVSACGY-SLLFAQKMGYG 283 (497)
T ss_pred CEEEEeCCEEEEEEecC----CCeEEEEE-CCC---EEEe-CEEEECcChh-HHHHHHHhCCC
Confidence 38999999999997652 23333432 233 4778 7999999975 66777777875
No 89
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=85.84 E-value=2.3 Score=33.01 Aligned_cols=64 Identities=19% Similarity=0.182 Sum_probs=40.6
Q ss_pred cCCCeEEEccceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEeceEEEecCCcccCCchhhhcccccccceeEEe
Q psy8943 25 LRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLLMVSGGSSVLNAMIYV 99 (134)
Q Consensus 25 ~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~g~~~~~~a~~~vIlaaGai~tP~lLl~SGig~~~n~~~~~ 99 (134)
...++++..++.|+.|..+ ++.+++|.. .++ .+.+ +.||+|+|+. ++.|+. ..+.+....+++.
T Consensus 148 ~~~g~~~~~~~~v~~i~~~----~~~~~~v~~-~~g---~~~a-~~vV~a~G~~-~~~l~~-~~~~~~~g~~~~~ 211 (337)
T TIGR02352 148 EKLGVEIIEHTEVQHIEIR----GEKVTAIVT-PSG---DVQA-DQVVLAAGAW-AGELLP-LPLRPVRGQPLRL 211 (337)
T ss_pred HHcCCEEEccceEEEEEee----CCEEEEEEc-CCC---EEEC-CEEEEcCChh-hhhccc-CCccccCceEEEe
Confidence 4568999999999999765 345666653 233 4677 7999999974 333433 3334444444444
No 90
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=85.25 E-value=1.4 Score=36.74 Aligned_cols=51 Identities=18% Similarity=0.280 Sum_probs=30.5
Q ss_pred hcCCCeEEEccceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEeceEEEecCCcccCCc
Q psy8943 24 RLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQ 82 (134)
Q Consensus 24 ~~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~g~~~~~~a~~~vIlaaGai~tP~ 82 (134)
+.+.+++|.+++.|..|..+ ++.+-.|.. .++. .+.+ +.||||+|...-|+
T Consensus 119 l~~~gv~i~~~~~V~~i~~~----~~~~f~v~~-~~~~--~~~a-~~vILAtGG~S~p~ 169 (409)
T PF03486_consen 119 LKRLGVEIHFNTRVKSIEKK----EDGVFGVKT-KNGG--EYEA-DAVILATGGKSYPK 169 (409)
T ss_dssp HHHHT-EEE-S--EEEEEEE----TTEEEEEEE-TTTE--EEEE-SEEEE----SSSGG
T ss_pred HHHcCCEEEeCCEeeeeeec----CCceeEeec-cCcc--cccC-CEEEEecCCCCccc
Confidence 45668999999999999886 245566666 2333 5677 79999999877776
No 91
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=83.71 E-value=2.9 Score=34.51 Aligned_cols=54 Identities=11% Similarity=0.100 Sum_probs=35.5
Q ss_pred hhhhhcCCCeEEEccceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEeceEEEecCCcccCCch
Q psy8943 20 LRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQL 83 (134)
Q Consensus 20 l~~~~~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~g~~~~~~a~~~vIlaaGai~tP~l 83 (134)
|...+.+.+++|++++.|+.| +. +. ..|.+..++ ..+.+ +.||+|+|..-.|++
T Consensus 92 L~~~l~~~gV~i~~~~~V~~i--~~----~~-~~v~~~~~~--~~~~a-~~vIlAtGG~s~p~~ 145 (376)
T TIGR03862 92 WLKRLAEQGVQFHTRHRWIGW--QG----GT-LRFETPDGQ--STIEA-DAVVLALGGASWSQL 145 (376)
T ss_pred HHHHHHHCCCEEEeCCEEEEE--eC----Cc-EEEEECCCc--eEEec-CEEEEcCCCcccccc
Confidence 334456789999999999998 31 11 234332221 24677 799999998766654
No 92
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=83.68 E-value=4.5 Score=34.33 Aligned_cols=48 Identities=15% Similarity=0.259 Sum_probs=36.2
Q ss_pred cCCCeEEEccceEEEEEeccCCCCCeEEEEEEEe--CCeEEEEEeceEEEecCCcc
Q psy8943 25 LRKNLHIAMETQALRLLFDKSGPVPKAVGIEILR--DGRKHIIRAKKEIISSAGAI 78 (134)
Q Consensus 25 ~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~--~g~~~~~~a~~~vIlaaGai 78 (134)
...+++++.++.|+.|..+ ++ ..+|.+.+ +|....+.+ +.||.|+|+.
T Consensus 166 ~~~Ga~i~~~~~V~~i~~~----~~-~~~v~~~~~~~g~~~~i~a-~~VVnAaG~w 215 (508)
T PRK12266 166 AERGAEILTRTRVVSARRE----NG-LWHVTLEDTATGKRYTVRA-RALVNAAGPW 215 (508)
T ss_pred HHcCCEEEcCcEEEEEEEe----CC-EEEEEEEEcCCCCEEEEEc-CEEEECCCcc
Confidence 4568999999999998755 22 34666654 466678888 8999999975
No 93
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=83.53 E-value=5.1 Score=33.97 Aligned_cols=61 Identities=18% Similarity=0.191 Sum_probs=39.7
Q ss_pred cCCCeEEEccceEEEEEeccCCCCCeEEEEEEE--eCCeEEEEEeceEEEecCCcccCCchhhhccccc
Q psy8943 25 LRKNLHIAMETQALRLLFDKSGPVPKAVGIEIL--RDGRKHIIRAKKEIISSAGAINSPQLLMVSGGSS 91 (134)
Q Consensus 25 ~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~--~~g~~~~~~a~~~vIlaaGai~tP~lLl~SGig~ 91 (134)
...+++|+.++.|+.|.-+. ++.+ .|... +++....+.+ +.||+|||+- +.+|+...|+..
T Consensus 189 ~~~Gv~i~~~t~V~~i~~~~---~~~v-~v~~~~~~~g~~~~i~A-~~VV~AAG~~-s~~La~~~Gi~~ 251 (483)
T TIGR01320 189 VQNGTTIRFGHEVRNLKRQS---DGSW-TVTVKNTRTGGKRTLNT-RFVFVGAGGG-ALPLLQKSGIPE 251 (483)
T ss_pred HhCCCEEEeCCEEEEEEEcC---CCeE-EEEEeeccCCceEEEEC-CEEEECCCcc-hHHHHHHcCCCc
Confidence 34589999999999987542 2222 23322 2344446788 7999999975 556666667753
No 94
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=82.37 E-value=2.5 Score=35.42 Aligned_cols=53 Identities=15% Similarity=0.266 Sum_probs=38.0
Q ss_pred cCCCeEEEccceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEeceEEEecCCcccCCchhh
Q psy8943 25 LRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLLM 85 (134)
Q Consensus 25 ~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~g~~~~~~a~~~vIlaaGai~tP~lLl 85 (134)
...+.+|+.++.|++|..+ ++++.+|... +|. .+.+ +.||+|++...+...|+
T Consensus 230 ~~~G~~i~~~~~V~~i~~~----~~~~~~V~~~-~g~--~~~a-d~VI~a~~~~~~~~~l~ 282 (502)
T TIGR02734 230 EDLGGELRLNAEVIRIETE----GGRATAVHLA-DGE--RLDA-DAVVSNADLHHTYRRLL 282 (502)
T ss_pred HHCCCEEEECCeEEEEEee----CCEEEEEEEC-CCC--EEEC-CEEEECCcHHHHHHHhc
Confidence 3457899999999999876 3577787654 343 3566 68999988766654443
No 95
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=82.10 E-value=3.3 Score=34.20 Aligned_cols=48 Identities=6% Similarity=0.180 Sum_probs=34.4
Q ss_pred CCCeEEEccceEEEEEeccCCCCCeEEEEEEEeC-Ce-EEEEEeceEEEecCCc
Q psy8943 26 RKNLHIAMETQALRLLFDKSGPVPKAVGIEILRD-GR-KHIIRAKKEIISSAGA 77 (134)
Q Consensus 26 ~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~-g~-~~~~~a~~~vIlaaGa 77 (134)
..+.+|.+++.|++|..+. ++++++|++.+. +. ...+.+ +.||++...
T Consensus 225 ~~g~~i~l~~~V~~I~~~~---~~~v~~v~~~~~~~~~~~~~~a-~~VI~a~p~ 274 (453)
T TIGR02731 225 SRGGEVRLNSRLKEIVLNE---DGSVKHFVLADGEGQRRFEVTA-DAYVSAMPV 274 (453)
T ss_pred hcCCEEeCCCeeEEEEECC---CCCEEEEEEecCCCCceeEEEC-CEEEEcCCH
Confidence 3467999999999997652 357888888653 22 225667 789998865
No 96
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=81.28 E-value=9.3 Score=32.23 Aligned_cols=68 Identities=16% Similarity=0.209 Sum_probs=43.4
Q ss_pred hhhhhhhcCCCeE--EEccceEEEEEeccCCCCCeEEEEEEEeC-CeEEEEEeceEEEecCCcccCCchhhhccccc
Q psy8943 18 AFLRPIRLRKNLH--IAMETQALRLLFDKSGPVPKAVGIEILRD-GRKHIIRAKKEIISSAGAINSPQLLMVSGGSS 91 (134)
Q Consensus 18 ~~l~~~~~~~nl~--i~t~~~V~ri~~~~~~~~~~a~gV~~~~~-g~~~~~~a~~~vIlaaGai~tP~lLl~SGig~ 91 (134)
.||...+..-++. |..+++|++|.... ++ --|...+. +....... +.||+|.|....|.+....|+..
T Consensus 115 ~YL~~~a~~fgl~~~I~~~t~V~~V~~~~----~~-w~V~~~~~~~~~~~~~~-d~VIvAtG~~~~P~~P~ipG~~~ 185 (461)
T PLN02172 115 AYLQDFAREFKIEEMVRFETEVVRVEPVD----GK-WRVQSKNSGGFSKDEIF-DAVVVCNGHYTEPNVAHIPGIKS 185 (461)
T ss_pred HHHHHHHHHcCCcceEEecCEEEEEeecC----Ce-EEEEEEcCCCceEEEEc-CEEEEeccCCCCCcCCCCCCccc
Confidence 4565555555665 89999999997541 21 12333332 22333445 79999999988899887766643
No 97
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=80.99 E-value=4.3 Score=32.88 Aligned_cols=48 Identities=19% Similarity=0.280 Sum_probs=32.6
Q ss_pred cCCCeEEEccceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEeceEEEecCCcccC
Q psy8943 25 LRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINS 80 (134)
Q Consensus 25 ~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~g~~~~~~a~~~vIlaaGai~t 80 (134)
...+++++.++.|+.|.... ++.+.+|... ++ .+.+ +.||+|||+..+
T Consensus 194 ~~~Gv~~~~~~~V~~i~~~~---~~~~~~v~t~-~g---~i~a-~~vVvaagg~~~ 241 (407)
T TIGR01373 194 DRRGVDIIQNCEVTGFIRRD---GGRVIGVETT-RG---FIGA-KKVGVAVAGHSS 241 (407)
T ss_pred HHCCCEEEeCCEEEEEEEcC---CCcEEEEEeC-Cc---eEEC-CEEEECCChhhH
Confidence 45689999999999986541 2455555432 34 4677 678888887543
No 98
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=79.94 E-value=12 Score=28.40 Aligned_cols=57 Identities=16% Similarity=0.246 Sum_probs=40.3
Q ss_pred cCCCeEEEccceEEEEEeccCCCCCeEEEEEEEe--CCeEEEEEeceEEEecCCcccCCchhhhc
Q psy8943 25 LRKNLHIAMETQALRLLFDKSGPVPKAVGIEILR--DGRKHIIRAKKEIISSAGAINSPQLLMVS 87 (134)
Q Consensus 25 ~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~--~g~~~~~~a~~~vIlaaGai~tP~lLl~S 87 (134)
...+++++.++.++++.-+ +++.++++.+ .+....+.+ +.+|+|.|....+.+|..+
T Consensus 188 ~~~gv~~~~~~~v~~i~~~-----~~~~~v~~~~~~~g~~~~i~~-D~vi~a~G~~~~~~~l~~~ 246 (300)
T TIGR01292 188 KNPNIEFLWNSTVKEIVGD-----NKVEGVKIKNTVTGEEEELKV-DGVFIAIGHEPNTELLKGL 246 (300)
T ss_pred hCCCeEEEeccEEEEEEcc-----CcEEEEEEEecCCCceEEEEc-cEEEEeeCCCCChHHHHHh
Confidence 3348999999999998643 3566777654 455667777 6999999966555555443
No 99
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=79.81 E-value=7.9 Score=32.72 Aligned_cols=48 Identities=17% Similarity=0.257 Sum_probs=35.6
Q ss_pred cCCCeEEEccceEEEEEeccCCCCCeEEEEEEEeC-CeEEEEEeceEEEecCCcc
Q psy8943 25 LRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRD-GRKHIIRAKKEIISSAGAI 78 (134)
Q Consensus 25 ~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~-g~~~~~~a~~~vIlaaGai 78 (134)
...+.+++.++.|+.|..+ +...+|...+. +....+.+ +.||.|+|+.
T Consensus 166 ~~~Ga~i~~~~~V~~i~~~-----~~~~~v~~~~~~g~~~~i~a-~~VVnAaG~w 214 (502)
T PRK13369 166 AERGATILTRTRCVSARRE-----GGLWRVETRDADGETRTVRA-RALVNAAGPW 214 (502)
T ss_pred HHCCCEEecCcEEEEEEEc-----CCEEEEEEEeCCCCEEEEEe-cEEEECCCcc
Confidence 4567999999999998765 22345665553 56677888 7999999964
No 100
>KOG4254|consensus
Probab=79.05 E-value=2.5 Score=36.25 Aligned_cols=54 Identities=26% Similarity=0.393 Sum_probs=39.8
Q ss_pred hhhhhhcCCCeEEEccceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEeceEEEecCCcccC
Q psy8943 19 FLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINS 80 (134)
Q Consensus 19 ~l~~~~~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~g~~~~~~a~~~vIlaaGai~t 80 (134)
-+.+.+++.+..|.|++.|..|+++ +++|.||.+. +|.+ +++ +.||.-|+...|
T Consensus 269 aia~~~~~~GaeI~tka~Vq~Illd----~gka~GV~L~-dG~e--v~s-k~VvSNAt~~~T 322 (561)
T KOG4254|consen 269 AIAEGAKRAGAEIFTKATVQSILLD----SGKAVGVRLA-DGTE--VRS-KIVVSNATPWDT 322 (561)
T ss_pred HHHHHHHhccceeeehhhhhheecc----CCeEEEEEec-CCcE--EEe-eeeecCCchHHH
Confidence 3445567788999999999999998 3799999988 4433 444 566666665555
No 101
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=78.82 E-value=6.2 Score=31.90 Aligned_cols=45 Identities=18% Similarity=0.288 Sum_probs=31.9
Q ss_pred cCCCeEEEccceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEeceEEEecCCcc
Q psy8943 25 LRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAI 78 (134)
Q Consensus 25 ~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~g~~~~~~a~~~vIlaaGai 78 (134)
.+.+++|++++.|+.|..+ ++.+.+|... .+ .+.+ +.||+|+|+.
T Consensus 212 ~~~G~~i~~~~~V~~i~~~----~~~~~~v~t~-~~---~~~a-~~VV~a~G~~ 256 (416)
T PRK00711 212 EQLGVKFRFNTPVDGLLVE----GGRITGVQTG-GG---VITA-DAYVVALGSY 256 (416)
T ss_pred HHCCCEEEcCCEEEEEEec----CCEEEEEEeC-Cc---EEeC-CEEEECCCcc
Confidence 4568999999999998765 2355555422 22 4667 7999999974
No 102
>PRK07208 hypothetical protein; Provisional
Probab=78.81 E-value=5.7 Score=32.96 Aligned_cols=49 Identities=16% Similarity=0.205 Sum_probs=34.1
Q ss_pred CCCeEEEccceEEEEEeccCCCCCeEEEEEEEe-CCeEEEEEeceEEEecCCcc
Q psy8943 26 RKNLHIAMETQALRLLFDKSGPVPKAVGIEILR-DGRKHIIRAKKEIISSAGAI 78 (134)
Q Consensus 26 ~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~-~g~~~~~~a~~~vIlaaGai 78 (134)
..+.+|++++.|++|..+. ++.++.+.+.. +|....+.+ +.||++...-
T Consensus 230 ~~g~~i~~~~~V~~I~~~~---~~~v~~~~~~~~~g~~~~~~a-d~VI~a~p~~ 279 (479)
T PRK07208 230 ALGGKVVLNAKVVGLHHDG---DGRIAVVVVNDTDGTEETVTA-DQVISSMPLR 279 (479)
T ss_pred HcCCEEEeCCEEEEEEEcC---CcEEEEEEEEcCCCCEEEEEc-CEEEECCCHH
Confidence 3468999999999998872 33455555543 455556777 6888887753
No 103
>KOG0042|consensus
Probab=77.99 E-value=1.1 Score=39.03 Aligned_cols=52 Identities=25% Similarity=0.380 Sum_probs=44.0
Q ss_pred hcCCCeEEEccceEEEEEeccCCCCCeEEEEEEEe--CCeEEEEEeceEEEecCCccc
Q psy8943 24 RLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILR--DGRKHIIRAKKEIISSAGAIN 79 (134)
Q Consensus 24 ~~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~--~g~~~~~~a~~~vIlaaGai~ 79 (134)
+.+.+.+++-...|.+|+.++ ++++.|+.+++ .|+++.++| +.||=|+|.+.
T Consensus 234 A~r~GA~v~Nh~ev~~Llkd~---~~kv~Ga~~rD~iTG~e~~I~A-k~VVNATGpfs 287 (680)
T KOG0042|consen 234 AARNGATVLNHVEVVSLLKDK---DGKVIGARARDHITGKEYEIRA-KVVVNATGPFS 287 (680)
T ss_pred HHhcchhhhhHHHHHHHhhCC---CCceeeeEEEEeecCcEEEEEE-EEEEeCCCCcc
Confidence 346788999999999998873 46899999988 899999999 89999999753
No 104
>PRK08401 L-aspartate oxidase; Provisional
Probab=77.53 E-value=9.4 Score=32.00 Aligned_cols=47 Identities=17% Similarity=0.268 Sum_probs=33.8
Q ss_pred hcCCCeEEEccceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEeceEEEecCCcccC
Q psy8943 24 RLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINS 80 (134)
Q Consensus 24 ~~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~g~~~~~~a~~~vIlaaGai~t 80 (134)
....+++++.. .|+.|..+ ++++.||.. ++. .+.+ +.||||+|+...
T Consensus 130 ~~~~gv~i~~~-~v~~l~~~----~g~v~Gv~~--~g~--~i~a-~~VVLATGG~~~ 176 (466)
T PRK08401 130 ARELGVNFIRG-FAEELAIK----NGKAYGVFL--DGE--LLKF-DATVIATGGFSG 176 (466)
T ss_pred HHhcCCEEEEe-EeEEEEee----CCEEEEEEE--CCE--EEEe-CeEEECCCcCcC
Confidence 34568898876 78888654 357888875 343 4667 799999998754
No 105
>PRK06126 hypothetical protein; Provisional
Probab=76.56 E-value=16 Score=30.98 Aligned_cols=49 Identities=14% Similarity=0.184 Sum_probs=34.7
Q ss_pred cCCCeEEEccceEEEEEeccCCCCCeEEEEEEEe--CCeEEEEEeceEEEecCCccc
Q psy8943 25 LRKNLHIAMETQALRLLFDKSGPVPKAVGIEILR--DGRKHIIRAKKEIISSAGAIN 79 (134)
Q Consensus 25 ~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~--~g~~~~~~a~~~vIlaaGai~ 79 (134)
+.++++|..++.|+.|..+. +.++ +.+.+ +|...++.+ +.||.|.|+-.
T Consensus 138 ~~~~v~i~~~~~v~~i~~~~----~~v~-v~~~~~~~g~~~~i~a-d~vVgADG~~S 188 (545)
T PRK06126 138 AQPGVTLRYGHRLTDFEQDA----DGVT-ATVEDLDGGESLTIRA-DYLVGCDGARS 188 (545)
T ss_pred hCCCceEEeccEEEEEEECC----CeEE-EEEEECCCCcEEEEEE-EEEEecCCcch
Confidence 35789999999999997662 3343 44443 566667888 78888888643
No 106
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=76.07 E-value=9.1 Score=33.79 Aligned_cols=54 Identities=19% Similarity=0.284 Sum_probs=38.9
Q ss_pred hcCCCeEEEccceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEeceEEEecCCcccCCchhh
Q psy8943 24 RLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLLM 85 (134)
Q Consensus 24 ~~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~g~~~~~~a~~~vIlaaGai~tP~lLl 85 (134)
.+.+|++++.+ .|+.+..+. ++++.+|...+ |. .+.+ +.||+|+|++...++..
T Consensus 107 e~~pgV~Ile~-~Vv~li~e~---~g~V~GV~t~~-G~--~I~A-d~VILATGtfL~g~ihi 160 (617)
T TIGR00136 107 ENQPNLSLFQG-EVEDLILED---NDEIKGVVTQD-GL--KFRA-KAVIITTGTFLRGKIHI 160 (617)
T ss_pred HcCCCcEEEEe-EEEEEEEec---CCcEEEEEECC-CC--EEEC-CEEEEccCcccCCCEEe
Confidence 34578999865 677776652 35788888753 43 5777 79999999997766665
No 107
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=75.51 E-value=9.1 Score=31.00 Aligned_cols=49 Identities=8% Similarity=0.081 Sum_probs=32.2
Q ss_pred hcCCCeEEEccceEEEEEeccCCCCCeEEEEEEEeCCe--EEEEEeceEEEecCCcc
Q psy8943 24 RLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGR--KHIIRAKKEIISSAGAI 78 (134)
Q Consensus 24 ~~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~g~--~~~~~a~~~vIlaaGai 78 (134)
+.+.+++|+.++.|++|..+ ++.+ .|.+.+.+. ...+.+ +.||+|+|+-
T Consensus 207 a~~~G~~i~~~~~V~~i~~~----~~~~-~v~~~~~~~~~~~~i~a-~~vV~a~G~~ 257 (410)
T PRK12409 207 CARLGVQFRYGQEVTSIKTD----GGGV-VLTVQPSAEHPSRTLEF-DGVVVCAGVG 257 (410)
T ss_pred HHhCCCEEEcCCEEEEEEEe----CCEE-EEEEEcCCCCccceEec-CEEEECCCcC
Confidence 34568999999999999754 2233 233333221 235677 7999999964
No 108
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=75.42 E-value=15 Score=31.24 Aligned_cols=57 Identities=18% Similarity=0.225 Sum_probs=43.6
Q ss_pred cCCCeEEEccceEEEEEeccCCCCCeEEEEEEEe--CCeEEEEEeceEEEecCCcccCCchhhh
Q psy8943 25 LRKNLHIAMETQALRLLFDKSGPVPKAVGIEILR--DGRKHIIRAKKEIISSAGAINSPQLLMV 86 (134)
Q Consensus 25 ~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~--~g~~~~~~a~~~vIlaaGai~tP~lLl~ 86 (134)
..+|+++++++.|++|.-+ ++++++|.+.+ ++....+.+ +.++++.|..-.+.+|..
T Consensus 398 ~~~gI~i~~~~~v~~i~~~----~g~v~~v~~~~~~~g~~~~i~~-D~v~~~~G~~p~~~~l~~ 456 (517)
T PRK15317 398 SLPNVTIITNAQTTEVTGD----GDKVTGLTYKDRTTGEEHHLEL-EGVFVQIGLVPNTEWLKG 456 (517)
T ss_pred cCCCcEEEECcEEEEEEcC----CCcEEEEEEEECCCCcEEEEEc-CEEEEeECCccCchHHhh
Confidence 3479999999999998633 35788888875 455667778 689999998877766644
No 109
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=74.67 E-value=11 Score=30.49 Aligned_cols=55 Identities=18% Similarity=0.177 Sum_probs=36.3
Q ss_pred cCCCeEEEccceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEeceEEEecCCcccCCchhhhcccc
Q psy8943 25 LRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLLMVSGGS 90 (134)
Q Consensus 25 ~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~g~~~~~~a~~~vIlaaGai~tP~lLl~SGig 90 (134)
...+++++.++.|..|..+. +.+ .|.. .++ .+.+ +.||+|+|+ .++.++...|+.
T Consensus 160 ~~~Gv~i~~~~~V~~i~~~~----~~~-~V~~-~~g---~i~a-d~vV~A~G~-~s~~l~~~~g~~ 214 (393)
T PRK11728 160 QARGGEIRLGAEVTALDEHA----NGV-VVRT-TQG---EYEA-RTLINCAGL-MSDRLAKMAGLE 214 (393)
T ss_pred HhCCCEEEcCCEEEEEEecC----CeE-EEEE-CCC---EEEe-CEEEECCCc-chHHHHHHhCCC
Confidence 45679999999999987552 222 3332 133 4677 799999997 466666555653
No 110
>PLN02985 squalene monooxygenase
Probab=74.35 E-value=16 Score=31.28 Aligned_cols=49 Identities=12% Similarity=0.103 Sum_probs=33.8
Q ss_pred hcCCCeEEEccceEEEEEeccCCCCCeEEEEEEEe-CCeEEEEEeceEEEecCCcc
Q psy8943 24 RLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILR-DGRKHIIRAKKEIISSAGAI 78 (134)
Q Consensus 24 ~~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~-~g~~~~~~a~~~vIlaaGai 78 (134)
...+|+++..+ +|+.+..+ ++.+.+|.+.. +|...++.+ +.||.|-|.-
T Consensus 158 ~~~~~V~i~~g-tvv~li~~----~~~v~gV~~~~~dG~~~~~~A-dLVVgADG~~ 207 (514)
T PLN02985 158 SSLPNVRLEEG-TVKSLIEE----KGVIKGVTYKNSAGEETTALA-PLTVVCDGCY 207 (514)
T ss_pred HhCCCeEEEee-eEEEEEEc----CCEEEEEEEEcCCCCEEEEEC-CEEEECCCCc
Confidence 34578998855 57766544 34678888865 566666777 6888888764
No 111
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=73.28 E-value=10 Score=33.52 Aligned_cols=46 Identities=24% Similarity=0.382 Sum_probs=34.4
Q ss_pred cCCCeEEEccceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEeceEEEecCCccc
Q psy8943 25 LRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAIN 79 (134)
Q Consensus 25 ~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~g~~~~~~a~~~vIlaaGai~ 79 (134)
..+|++++ +..|+.|..+ ++++.||... +|. .+.+ +.||+|+|+.-
T Consensus 112 ~~~nV~I~-q~~V~~Li~e----~grV~GV~t~-dG~--~I~A-k~VIlATGTFL 157 (618)
T PRK05192 112 NQPNLDLF-QGEVEDLIVE----NGRVVGVVTQ-DGL--EFRA-KAVVLTTGTFL 157 (618)
T ss_pred cCCCcEEE-EeEEEEEEec----CCEEEEEEEC-CCC--EEEC-CEEEEeeCcch
Confidence 46789986 5678888776 3578888875 343 5777 79999999753
No 112
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=72.71 E-value=9.8 Score=31.91 Aligned_cols=49 Identities=14% Similarity=0.251 Sum_probs=35.5
Q ss_pred hcCCCeEEEccceEEEEEeccCCCCCeEEEEEEEe-CCeEEEEEeceEEEecCCcccCCc
Q psy8943 24 RLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILR-DGRKHIIRAKKEIISSAGAINSPQ 82 (134)
Q Consensus 24 ~~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~-~g~~~~~~a~~~vIlaaGai~tP~ 82 (134)
+...+++|++++.|..|..+. .+..+.. ++. .+++ +.+|||.|...-|+
T Consensus 121 ~~~~gV~i~~~~~v~~v~~~~-------~~f~l~t~~g~--~i~~-d~lilAtGG~S~P~ 170 (408)
T COG2081 121 LEALGVTIRTRSRVSSVEKDD-------SGFRLDTSSGE--TVKC-DSLILATGGKSWPK 170 (408)
T ss_pred HHHcCcEEEecceEEeEEecC-------ceEEEEcCCCC--EEEc-cEEEEecCCcCCCC
Confidence 356789999999999997761 2334443 343 6777 78999999877774
No 113
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=72.54 E-value=4.7 Score=35.06 Aligned_cols=50 Identities=26% Similarity=0.299 Sum_probs=40.4
Q ss_pred CCCeEEEccceEEEEEeccCCCCCeEEEEEEEe--CCeEEEEEeceEEEecCCccc
Q psy8943 26 RKNLHIAMETQALRLLFDKSGPVPKAVGIEILR--DGRKHIIRAKKEIISSAGAIN 79 (134)
Q Consensus 26 ~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~--~g~~~~~~a~~~vIlaaGai~ 79 (134)
..+++++.+..+++|+.+. ++.+.||...+ ++....+++ +.||+|+|+..
T Consensus 151 ~~~~~~~~~~~~~~l~~~~---~~~v~Gvv~~~~~~g~~~~~~a-kavilaTGG~g 202 (562)
T COG1053 151 FSGIEIFDEYFVLDLLVDD---GGGVAGVVARDLRTGELYVFRA-KAVILATGGAG 202 (562)
T ss_pred hhcchhhhhhhhhhheecC---CCcEEEEEEEEecCCcEEEEec-CcEEEccCCce
Confidence 3667899999999998873 34488887765 677788888 89999999876
No 114
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=71.81 E-value=12 Score=30.94 Aligned_cols=50 Identities=26% Similarity=0.353 Sum_probs=34.3
Q ss_pred hhhhhhcCCCeEEEccceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEeceEEEecCCc
Q psy8943 19 FLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGA 77 (134)
Q Consensus 19 ~l~~~~~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~g~~~~~~a~~~vIlaaGa 77 (134)
+|...+.+.+++|+.++.|+.|..+ ++++.+|. .++. .+.+ +.||.|.|+
T Consensus 113 ~L~~~a~~~Gv~i~~~~~V~~i~~~----~g~v~~v~--~~g~--~i~A-~~VI~A~G~ 162 (428)
T PRK10157 113 WLMEQAEEAGAQLITGIRVDNLVQR----DGKVVGVE--ADGD--VIEA-KTVILADGV 162 (428)
T ss_pred HHHHHHHHCCCEEECCCEEEEEEEe----CCEEEEEE--cCCc--EEEC-CEEEEEeCC
Confidence 4434344568999999999999765 24554543 2343 4677 799999987
No 115
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=71.80 E-value=18 Score=29.21 Aligned_cols=49 Identities=12% Similarity=0.299 Sum_probs=33.4
Q ss_pred cCCCeEEEccceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEeceEEEecCCccc
Q psy8943 25 LRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAIN 79 (134)
Q Consensus 25 ~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~g~~~~~~a~~~vIlaaGai~ 79 (134)
..+++++..++.|+.|..+. +.+ .|.+.+++...++++ +.||.|-|.-.
T Consensus 133 ~~~~v~i~~~~~v~~v~~~~----~~~-~v~~~~~~~~~~i~a-dlvIgADG~~S 181 (415)
T PRK07364 133 SCPNITWLCPAEVVSVEYQQ----DAA-TVTLEIEGKQQTLQS-KLVVAADGARS 181 (415)
T ss_pred cCCCcEEEcCCeeEEEEecC----Cee-EEEEccCCcceEEee-eEEEEeCCCCc
Confidence 34689999999999986552 222 355554444456888 78888888643
No 116
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=71.70 E-value=12 Score=29.04 Aligned_cols=49 Identities=16% Similarity=0.212 Sum_probs=36.0
Q ss_pred CCCeEEEccceEEEEEeccCCCCCeEEEEEEEe-----CC---eEEEEEeceEEEecCCc
Q psy8943 26 RKNLHIAMETQALRLLFDKSGPVPKAVGIEILR-----DG---RKHIIRAKKEIISSAGA 77 (134)
Q Consensus 26 ~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~-----~g---~~~~~~a~~~vIlaaGa 77 (134)
..+++++.++.|+.|..+.+ ..++.||.+.. .+ ....+++ +.||.|+|.
T Consensus 112 e~GV~I~~~t~V~dli~~~~--~~~V~GVv~~~~~v~~~g~~~d~~~i~A-k~VVdATG~ 168 (254)
T TIGR00292 112 QAGAKIFNGTSVEDLITRDD--TVGVAGVVINWSAIELAGLHVDPLTQRS-RVVVDATGH 168 (254)
T ss_pred HcCCEEECCcEEEEEEEeCC--CCceEEEEeCCccccccCCCCCCEEEEc-CEEEEeecC
Confidence 45699999999999988631 12788987632 11 3567888 899999984
No 117
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=71.16 E-value=15 Score=30.73 Aligned_cols=59 Identities=17% Similarity=0.296 Sum_probs=40.8
Q ss_pred CCCeEEEccceEEEEEeccCCCCCeEEEEEEEe-----------CCeEEEEEeceEEEecCCcccC-Cchhhhccc
Q psy8943 26 RKNLHIAMETQALRLLFDKSGPVPKAVGIEILR-----------DGRKHIIRAKKEIISSAGAINS-PQLLMVSGG 89 (134)
Q Consensus 26 ~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~-----------~g~~~~~~a~~~vIlaaGai~t-P~lLl~SGi 89 (134)
..++++++++.+++|.-+ ++++++|++.. .+....+.+ +.||+|.|..-. ..++...|+
T Consensus 341 ~~GV~i~~~~~~~~i~~~----~g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~-D~VI~A~G~~p~~~~l~~~~gl 411 (471)
T PRK12810 341 EEGVEREFNVQTKEFEGE----NGKVTGVKVVRTELGEGDFEPVEGSEFVLPA-DLVLLAMGFTGPEAGLLAQFGV 411 (471)
T ss_pred HcCCeEEeccCceEEEcc----CCEEEEEEEEEEEecCCCccccCCceEEEEC-CEEEECcCcCCCchhhccccCc
Confidence 467999999999999533 46888887652 244567777 799999995433 345544554
No 118
>KOG2852|consensus
Probab=70.89 E-value=8.5 Score=31.39 Aligned_cols=63 Identities=13% Similarity=0.094 Sum_probs=41.7
Q ss_pred hhhhcCCCeEEEccceEEEEEeccCCCCCeEEEEEEEeC-CeEEEEEeceEEEecCCcccCCchhhhcccc
Q psy8943 21 RPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRD-GRKHIIRAKKEIISSAGAINSPQLLMVSGGS 90 (134)
Q Consensus 21 ~~~~~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~-g~~~~~~a~~~vIlaaGai~tP~lLl~SGig 90 (134)
..+..+.+++++.+. |..|.-+ .+|+.+|..... +..+...+ ..+|||+|.. |++||..-+|.
T Consensus 155 sea~k~~~V~lv~Gk-v~ev~dE----k~r~n~v~~ae~~~ti~~~d~-~~ivvsaGPW-Tskllp~~rIs 218 (380)
T KOG2852|consen 155 SEAEKRGGVKLVFGK-VKEVSDE----KHRINSVPKAEAEDTIIKADV-HKIVVSAGPW-TSKLLPFTRIS 218 (380)
T ss_pred HHHHhhcCeEEEEee-eEEeecc----cccccccchhhhcCceEEeee-eEEEEecCCC-chhhccccccc
Confidence 345678889999884 5555422 468888876642 33344444 7899999976 77888775444
No 119
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=69.95 E-value=22 Score=29.57 Aligned_cols=61 Identities=11% Similarity=0.184 Sum_probs=40.3
Q ss_pred cCCCeEEEccceEEEEEeccCCCCCeEEEEEEEe--------CC---------eEEEEEeceEEEecCCcccCCchhhhc
Q psy8943 25 LRKNLHIAMETQALRLLFDKSGPVPKAVGIEILR--------DG---------RKHIIRAKKEIISSAGAINSPQLLMVS 87 (134)
Q Consensus 25 ~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~--------~g---------~~~~~~a~~~vIlaaGai~tP~lLl~S 87 (134)
...++++++++.+.++.-+ +++++++|++.. +| ....+.+ +.||+|.|..-...+|...
T Consensus 320 ~~~GV~~~~~~~~~~i~~~---~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-D~Vi~AiG~~p~~~~l~~~ 395 (449)
T TIGR01316 320 EEEGVKFHFLCQPVEIIGD---EEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEA-DAVIVAIGNGSNPIMAETT 395 (449)
T ss_pred HhCCCEEEeccCcEEEEEc---CCCeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEEC-CEEEECCCCCCCchhhhcc
Confidence 4568999999999998643 245788887752 22 2346777 7999999964444333334
Q ss_pred cc
Q psy8943 88 GG 89 (134)
Q Consensus 88 Gi 89 (134)
|+
T Consensus 396 gl 397 (449)
T TIGR01316 396 RL 397 (449)
T ss_pred Cc
Confidence 44
No 120
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=69.75 E-value=21 Score=29.56 Aligned_cols=54 Identities=11% Similarity=0.147 Sum_probs=35.1
Q ss_pred hhcCCCeEEEccceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEeceEEEecCCcccCCc
Q psy8943 23 IRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQ 82 (134)
Q Consensus 23 ~~~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~g~~~~~~a~~~vIlaaGai~tP~ 82 (134)
.+...++++++++.|++|.-+ ++ ...|.+..++...++.+ +.||+|.|..-...
T Consensus 216 ~l~~~gV~i~~~~~V~~i~~~----~~-~~~v~~~~~~~~~~i~~-D~ViiA~G~~p~~~ 269 (463)
T TIGR02053 216 ALAEEGIEVVTSAQVKAVSVR----GG-GKIITVEKPGGQGEVEA-DELLVATGRRPNTD 269 (463)
T ss_pred HHHHcCCEEEcCcEEEEEEEc----CC-EEEEEEEeCCCceEEEe-CEEEEeECCCcCCC
Confidence 334568999999999998654 12 23344443333346777 78999999654444
No 121
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=68.99 E-value=12 Score=30.17 Aligned_cols=57 Identities=16% Similarity=0.280 Sum_probs=32.0
Q ss_pred hhhhhhhcCCCeEEEccceEEEEEeccCCCCCeEEEEEEEe-CCeEEEEEeceEEEecCC
Q psy8943 18 AFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILR-DGRKHIIRAKKEIISSAG 76 (134)
Q Consensus 18 ~~l~~~~~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~-~g~~~~~~a~~~vIlaaG 76 (134)
.|+.=++++=.-.+..+..|+.|.....++. ..-.|...+ +|....+.+ +.|||+.|
T Consensus 99 dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~-~~~~V~~~~~~g~~~~~~a-r~vVla~G 156 (341)
T PF13434_consen 99 DYLRWVAEQLDNQVRYGSEVTSIEPDDDGDE-DLFRVTTRDSDGDGETYRA-RNVVLATG 156 (341)
T ss_dssp HHHHHHHCCGTTTEEESEEEEEEEEEEETTE-EEEEEEEEETTS-EEEEEE-SEEEE---
T ss_pred HHHHHHHHhCCCceEECCEEEEEEEecCCCc-cEEEEEEeecCCCeeEEEe-CeEEECcC
Confidence 3443344332333777889999988753211 233444443 567778888 78888888
No 122
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=68.10 E-value=20 Score=30.16 Aligned_cols=59 Identities=20% Similarity=0.277 Sum_probs=41.3
Q ss_pred hhcCCCeEEEccceEEEEEeccCCCCCeEEEEEEEe--CCeEEEEEeceEEEecCCcccCCchhhh
Q psy8943 23 IRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILR--DGRKHIIRAKKEIISSAGAINSPQLLMV 86 (134)
Q Consensus 23 ~~~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~--~g~~~~~~a~~~vIlaaGai~tP~lLl~ 86 (134)
+..-+|++|++++..+.|.=+ +.+|+|+.|.+ +|..+.+.- .-|.+--|-+-+..+|.-
T Consensus 399 l~sl~Nv~ii~na~Ttei~Gd----g~kV~Gl~Y~dr~sge~~~l~L-eGvFVqIGL~PNT~WLkg 459 (520)
T COG3634 399 LRSLPNVTIITNAQTTEVKGD----GDKVTGLEYRDRVSGEEHHLEL-EGVFVQIGLLPNTEWLKG 459 (520)
T ss_pred HhcCCCcEEEecceeeEEecC----CceecceEEEeccCCceeEEEe-eeeEEEEecccChhHhhc
Confidence 456789999999999998644 45899999987 566665554 344455565555555543
No 123
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=67.81 E-value=31 Score=29.30 Aligned_cols=55 Identities=18% Similarity=0.265 Sum_probs=40.7
Q ss_pred CCCeEEEccceEEEEEeccCCCCCeEEEEEEEe--CCeEEEEEeceEEEecCCcccCCchhh
Q psy8943 26 RKNLHIAMETQALRLLFDKSGPVPKAVGIEILR--DGRKHIIRAKKEIISSAGAINSPQLLM 85 (134)
Q Consensus 26 ~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~--~g~~~~~~a~~~vIlaaGai~tP~lLl 85 (134)
..+++|++++.|+++.-+ ++++++|.+.+ ++....+.+ +.|++|.|..-+..+|.
T Consensus 400 ~~gV~i~~~~~v~~i~~~----~~~v~~v~~~~~~~~~~~~i~~-D~vi~a~G~~Pn~~~l~ 456 (515)
T TIGR03140 400 LPNVDILTSAQTTEIVGD----GDKVTGIRYQDRNSGEEKQLDL-DGVFVQIGLVPNTEWLK 456 (515)
T ss_pred CCCCEEEECCeeEEEEcC----CCEEEEEEEEECCCCcEEEEEc-CEEEEEeCCcCCchHHh
Confidence 368999999999998533 35788888865 355556777 68999999776666553
No 124
>PRK12831 putative oxidoreductase; Provisional
Probab=67.09 E-value=25 Score=29.57 Aligned_cols=56 Identities=16% Similarity=0.319 Sum_probs=38.8
Q ss_pred cCCCeEEEccceEEEEEeccCCCCCeEEEEEEEe-----------------CCeEEEEEeceEEEecCCcccCCchh
Q psy8943 25 LRKNLHIAMETQALRLLFDKSGPVPKAVGIEILR-----------------DGRKHIIRAKKEIISSAGAINSPQLL 84 (134)
Q Consensus 25 ~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~-----------------~g~~~~~~a~~~vIlaaGai~tP~lL 84 (134)
...++++++++.+.++.-+ +++++++|++.. .+....+.+ +.||+|.|..-...++
T Consensus 329 ~~eGV~i~~~~~~~~i~~~---~~g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i~~-D~Vi~AiG~~p~~~~~ 401 (464)
T PRK12831 329 KEEGVIFDLLTNPVEILGD---ENGWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEV-DTVIMSLGTSPNPLIS 401 (464)
T ss_pred HHcCCEEEecccceEEEec---CCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEEC-CEEEECCCCCCChhhh
Confidence 3468999999999998654 246888887641 233446777 7999999965444443
No 125
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=67.02 E-value=31 Score=28.70 Aligned_cols=60 Identities=15% Similarity=0.183 Sum_probs=38.8
Q ss_pred hcCCCeEEEccceEEEEEeccCCCCCeEEEEEEE-eCCeEEEEEeceEEEecCCcccCCchh--hhccc
Q psy8943 24 RLRKNLHIAMETQALRLLFDKSGPVPKAVGIEIL-RDGRKHIIRAKKEIISSAGAINSPQLL--MVSGG 89 (134)
Q Consensus 24 ~~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~-~~g~~~~~~a~~~vIlaaGai~tP~lL--l~SGi 89 (134)
+.+.+++|++++.|+++.-+ ++. ..+.+. .+|....+.+ +.||+|.|..-...+| ..+|+
T Consensus 223 l~~~gV~i~~~~~v~~i~~~----~~~-~~v~~~~~~g~~~~i~~-D~vi~a~G~~pn~~~l~l~~~g~ 285 (466)
T PRK07818 223 YKKLGVKILTGTKVESIDDN----GSK-VTVTVSKKDGKAQELEA-DKVLQAIGFAPRVEGYGLEKTGV 285 (466)
T ss_pred HHHCCCEEEECCEEEEEEEe----CCe-EEEEEEecCCCeEEEEe-CEEEECcCcccCCCCCCchhcCc
Confidence 34568999999999998643 222 234444 2555456777 7999999976555543 33454
No 126
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=66.94 E-value=19 Score=28.64 Aligned_cols=54 Identities=19% Similarity=0.181 Sum_probs=33.7
Q ss_pred cCCCeEEEccceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEeceEEEecCCcccCCchhhhccc
Q psy8943 25 LRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLLMVSGG 89 (134)
Q Consensus 25 ~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~g~~~~~~a~~~vIlaaGai~tP~lLl~SGi 89 (134)
.+.+++++.++.|++|..+ ++.+ .|.. .++ .+.+ +.||+|+|+..+ .++...|+
T Consensus 156 ~~~g~~~~~~~~V~~i~~~----~~~~-~v~~-~~~---~i~a-~~vV~aaG~~~~-~l~~~~g~ 209 (380)
T TIGR01377 156 EAHGATVRDGTKVVEIEPT----ELLV-TVKT-TKG---SYQA-NKLVVTAGAWTS-KLLSPLGI 209 (380)
T ss_pred HHcCCEEECCCeEEEEEec----CCeE-EEEe-CCC---EEEe-CEEEEecCcchH-HHhhhccc
Confidence 4568999999999998754 2233 2332 133 4667 689999997543 44433343
No 127
>PRK07233 hypothetical protein; Provisional
Probab=66.82 E-value=11 Score=30.30 Aligned_cols=50 Identities=22% Similarity=0.240 Sum_probs=34.2
Q ss_pred CCCeEEEccceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEeceEEEecCCcccCCchh
Q psy8943 26 RKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLL 84 (134)
Q Consensus 26 ~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~g~~~~~~a~~~vIlaaGai~tP~lL 84 (134)
..+.+|.+++.|++|..+ +++++.+. .++. .+.+ +.||+|+..-..+.+|
T Consensus 210 ~~g~~v~~~~~V~~i~~~----~~~~~~~~--~~~~--~~~a-d~vI~a~p~~~~~~ll 259 (434)
T PRK07233 210 ARGGEIRLGTPVTSVVID----GGGVTGVE--VDGE--EEDF-DAVISTAPPPILARLV 259 (434)
T ss_pred hcCceEEeCCCeeEEEEc----CCceEEEE--eCCc--eEEC-CEEEECCCHHHHHhhc
Confidence 446799999999999876 23454443 2333 4666 6899998876555554
No 128
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=65.87 E-value=10 Score=32.01 Aligned_cols=45 Identities=22% Similarity=0.345 Sum_probs=31.1
Q ss_pred hcCCCeEEEccceEEEEEeccCCCCCeEEEEEEEe-CCeEEEEEeceEEEecCCc
Q psy8943 24 RLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILR-DGRKHIIRAKKEIISSAGA 77 (134)
Q Consensus 24 ~~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~-~g~~~~~~a~~~vIlaaGa 77 (134)
+...+.+|.+++.|++|+.+. ++ ++.+.. ++ ..+.+ +.||..+..
T Consensus 234 ~~~~Gg~I~~~~~V~~I~v~~----g~--g~~~~~~~g--~~~~a-d~vv~~~~~ 279 (487)
T COG1233 234 AREHGGEIRTGAEVSQILVEG----GK--GVGVRTSDG--ENIEA-DAVVSNADP 279 (487)
T ss_pred HHHcCCEEECCCceEEEEEeC----Cc--ceEEecccc--ceecc-ceeEecCch
Confidence 345679999999999999983 45 444443 33 45556 677777666
No 129
>PRK10015 oxidoreductase; Provisional
Probab=65.73 E-value=20 Score=29.67 Aligned_cols=50 Identities=16% Similarity=0.216 Sum_probs=34.1
Q ss_pred hhhhhhcCCCeEEEccceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEeceEEEecCCc
Q psy8943 19 FLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGA 77 (134)
Q Consensus 19 ~l~~~~~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~g~~~~~~a~~~vIlaaGa 77 (134)
+|...+...+++++.++.|+.|..+ ++++.+|.. ++ ..+.+ +.||+|.|+
T Consensus 113 ~L~~~a~~~Gv~i~~~~~V~~i~~~----~~~v~~v~~--~~--~~i~A-~~VI~AdG~ 162 (429)
T PRK10015 113 WLMEQAEQAGAQFIPGVRVDALVRE----GNKVTGVQA--GD--DILEA-NVVILADGV 162 (429)
T ss_pred HHHHHHHHcCCEEECCcEEEEEEEe----CCEEEEEEe--CC--eEEEC-CEEEEccCc
Confidence 3433334568999999999998765 245666542 22 35778 799999996
No 130
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=65.64 E-value=28 Score=29.22 Aligned_cols=60 Identities=17% Similarity=0.263 Sum_probs=40.1
Q ss_pred CCCeEEEccceEEEEEeccCCCCCeEEEEEEEe-----------------CCeEEEEEeceEEEecCCcccC-Cchhhhc
Q psy8943 26 RKNLHIAMETQALRLLFDKSGPVPKAVGIEILR-----------------DGRKHIIRAKKEIISSAGAINS-PQLLMVS 87 (134)
Q Consensus 26 ~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~-----------------~g~~~~~~a~~~vIlaaGai~t-P~lLl~S 87 (134)
..++++++++.+.+|..+ .++++++|++.. .+....+.+ +.||+|.|..-. +.+|..+
T Consensus 332 ~~GV~~~~~~~~~~i~~~---~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~-D~Vi~a~G~~p~~~~~~~~~ 407 (467)
T TIGR01318 332 EEGVEFLFNVQPVYIECD---EDGRVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPA-DVVIMAFGFQPHAMPWLAGH 407 (467)
T ss_pred hcCCEEEecCCcEEEEEC---CCCeEEEEEEEEEEecccCCCCCccceecCCceEEEEC-CEEEECCcCCCCcccccccc
Confidence 467999999999998654 235788887642 133456777 689999996543 3344444
Q ss_pred cc
Q psy8943 88 GG 89 (134)
Q Consensus 88 Gi 89 (134)
|+
T Consensus 408 gl 409 (467)
T TIGR01318 408 GI 409 (467)
T ss_pred Cc
Confidence 44
No 131
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=65.11 E-value=29 Score=26.11 Aligned_cols=47 Identities=13% Similarity=0.183 Sum_probs=31.1
Q ss_pred hcCCCeEEEccceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEeceEEEecCCcc
Q psy8943 24 RLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAI 78 (134)
Q Consensus 24 ~~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~g~~~~~~a~~~vIlaaGai 78 (134)
..+.+++++.++.|+++..+. +.+ .+.+.. ....+++ +.||.|.|.-
T Consensus 101 ~~~~gv~~~~~~~v~~~~~~~----~~~-~~~~~~--~~~~~~a-~~vv~a~G~~ 147 (295)
T TIGR02032 101 AQEAGAELRLGTTVLDVEIHD----DRV-VVIVRG--GEGTVTA-KIVIGADGSR 147 (295)
T ss_pred HHHcCCEEEeCcEEeeEEEeC----CEE-EEEEcC--ccEEEEe-CEEEECCCcc
Confidence 345679999999999997762 222 222222 2235677 7999999965
No 132
>PRK10262 thioredoxin reductase; Provisional
Probab=64.83 E-value=45 Score=26.05 Aligned_cols=56 Identities=7% Similarity=0.079 Sum_probs=39.3
Q ss_pred hcCCCeEEEccceEEEEEeccCCCCCeEEEEEEEeC---CeEEEEEeceEEEecCCcccCCchh
Q psy8943 24 RLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRD---GRKHIIRAKKEIISSAGAINSPQLL 84 (134)
Q Consensus 24 ~~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~---g~~~~~~a~~~vIlaaGai~tP~lL 84 (134)
+...++++++++.+++|.-+ +..+++|.+.+. +....+.+ +.||++.|..-...++
T Consensus 195 l~~~gV~i~~~~~v~~v~~~----~~~~~~v~~~~~~~~~~~~~i~~-D~vv~a~G~~p~~~l~ 253 (321)
T PRK10262 195 VENGNIILHTNRTLEEVTGD----QMGVTGVRLRDTQNSDNIESLDV-AGLFVAIGHSPNTAIF 253 (321)
T ss_pred ccCCCeEEEeCCEEEEEEcC----CccEEEEEEEEcCCCCeEEEEEC-CEEEEEeCCccChhHh
Confidence 34668999999999998533 235778887652 34456777 7999999976555544
No 133
>PRK06370 mercuric reductase; Validated
Probab=62.67 E-value=63 Score=26.80 Aligned_cols=54 Identities=15% Similarity=0.314 Sum_probs=34.8
Q ss_pred hhcCCCeEEEccceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEeceEEEecCCcccCCc
Q psy8943 23 IRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQ 82 (134)
Q Consensus 23 ~~~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~g~~~~~~a~~~vIlaaGai~tP~ 82 (134)
.+...++++++++.|.+|.-+. +. ..|.+...+....+.+ +.||+|.|..-...
T Consensus 221 ~l~~~GV~i~~~~~V~~i~~~~----~~-~~v~~~~~~~~~~i~~-D~Vi~A~G~~pn~~ 274 (463)
T PRK06370 221 ILEREGIDVRLNAECIRVERDG----DG-IAVGLDCNGGAPEITG-SHILVAVGRVPNTD 274 (463)
T ss_pred HHHhCCCEEEeCCEEEEEEEcC----CE-EEEEEEeCCCceEEEe-CEEEECcCCCcCCC
Confidence 3456789999999999986541 21 2344443333345667 68999999765554
No 134
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=61.88 E-value=33 Score=30.09 Aligned_cols=61 Identities=20% Similarity=0.279 Sum_probs=40.5
Q ss_pred cCCCeEEEccceEEEEEeccCCCCCeEEEEEEEe-----------------CCeEEEEEeceEEEecCCcccC-Cchhhh
Q psy8943 25 LRKNLHIAMETQALRLLFDKSGPVPKAVGIEILR-----------------DGRKHIIRAKKEIISSAGAINS-PQLLMV 86 (134)
Q Consensus 25 ~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~-----------------~g~~~~~~a~~~vIlaaGai~t-P~lLl~ 86 (134)
...+++++.++.+.+|..+ +++++++|++.. .|..+.+.+ +.||+|.|..-. ..+|..
T Consensus 517 ~~~Gv~~~~~~~~~~i~~~---~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~-D~Vi~AiG~~p~~~~~~~~ 592 (654)
T PRK12769 517 REEGANFEFNVQPVALELN---EQGHVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPA-DAVIMAFGFNPHGMPWLES 592 (654)
T ss_pred HHcCCeEEeccCcEEEEEC---CCCeEEEEEEEEEEecCcCCCCCCcceeCCCceEEEEC-CEEEECccCCCCccccccc
Confidence 3467999999999998654 246888887642 133456777 799999996543 334443
Q ss_pred ccc
Q psy8943 87 SGG 89 (134)
Q Consensus 87 SGi 89 (134)
+|+
T Consensus 593 ~gl 595 (654)
T PRK12769 593 HGV 595 (654)
T ss_pred cCC
Confidence 444
No 135
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=61.43 E-value=29 Score=27.45 Aligned_cols=49 Identities=20% Similarity=0.273 Sum_probs=32.3
Q ss_pred cCCCeEEEccceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEeceEEEecCCcccCCchh
Q psy8943 25 LRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLL 84 (134)
Q Consensus 25 ~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~g~~~~~~a~~~vIlaaGai~tP~lL 84 (134)
.+.++++..++.|++|..+. + ++.+..++. .+.+ +.||+|+|+. ++.++
T Consensus 160 ~~~gv~i~~~~~v~~i~~~~----~---~~~v~~~~g--~~~a-~~vV~A~G~~-~~~l~ 208 (376)
T PRK11259 160 REAGAELLFNEPVTAIEADG----D---GVTVTTADG--TYEA-KKLVVSAGAW-VKDLL 208 (376)
T ss_pred HHCCCEEECCCEEEEEEeeC----C---eEEEEeCCC--EEEe-eEEEEecCcc-hhhhc
Confidence 35689999999999997652 2 233333222 4667 7999999975 33443
No 136
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=61.11 E-value=22 Score=29.82 Aligned_cols=59 Identities=17% Similarity=0.263 Sum_probs=42.0
Q ss_pred hhcCCCeEEEccceEEEEEeccCCCCCeEEEEE--EEe-----CC--------eEEEEEeceEEEecCCcccCCchhhh
Q psy8943 23 IRLRKNLHIAMETQALRLLFDKSGPVPKAVGIE--ILR-----DG--------RKHIIRAKKEIISSAGAINSPQLLMV 86 (134)
Q Consensus 23 ~~~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~--~~~-----~g--------~~~~~~a~~~vIlaaGai~tP~lLl~ 86 (134)
++.++.+++.-.++|.+|... +++++||. +.. .| ..+.+.| ..||+++|.|+--+=|.+
T Consensus 162 ~~~~~~v~f~~RHrV~~l~~t----~grvtGv~GdVLeps~v~RG~~SSR~~~GdFef~A-~aviv~SGGIGGnhelVR 235 (552)
T COG3573 162 AQRRGRVTFRFRHRVDGLTTT----GGRVTGVRGDVLEPSDVERGQPSSREVVGDFEFSA-SAVIVASGGIGGNHELVR 235 (552)
T ss_pred HHhCCceEEEeeeeccceEee----CCeEeeecccccCCCccccCCCccceeecceEEee-eeEEEecCCcCCCHHHHH
Confidence 445778999999999999887 46999984 211 11 1267778 689999998876555544
No 137
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=59.56 E-value=51 Score=27.16 Aligned_cols=52 Identities=13% Similarity=0.233 Sum_probs=34.7
Q ss_pred hcCCCeEEEccceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEeceEEEecCCcccCCc
Q psy8943 24 RLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQ 82 (134)
Q Consensus 24 ~~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~g~~~~~~a~~~vIlaaGai~tP~ 82 (134)
+...++++.+++.|++|..+ ++.+. ++. .++....+.+ +.+|+|.|..-...
T Consensus 221 l~~~gi~i~~~~~v~~i~~~----~~~v~-v~~-~~g~~~~i~~-D~vi~a~G~~p~~~ 272 (461)
T TIGR01350 221 LKKKGVKILTNTKVTAVEKN----DDQVV-YEN-KGGETETLTG-EKVLVAVGRKPNTE 272 (461)
T ss_pred HHHcCCEEEeCCEEEEEEEe----CCEEE-EEE-eCCcEEEEEe-CEEEEecCCcccCC
Confidence 34567999999999998754 22332 332 2444445677 68999999776655
No 138
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=59.08 E-value=35 Score=27.37 Aligned_cols=44 Identities=20% Similarity=0.166 Sum_probs=29.5
Q ss_pred cCCCeEEEccceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEeceEEEecCCcc
Q psy8943 25 LRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAI 78 (134)
Q Consensus 25 ~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~g~~~~~~a~~~vIlaaGai 78 (134)
.+ +++|+.++.|+.|..+ ++. ..|.. .+|. .+.+ +.||+|+|+.
T Consensus 146 ~~-G~~i~~~~~V~~i~~~----~~~-~~v~t-~~g~--~~~a-~~vV~a~G~~ 189 (381)
T TIGR03197 146 GI-RLTLHFNTEITSLERD----GEG-WQLLD-ANGE--VIAA-SVVVLANGAQ 189 (381)
T ss_pred CC-CcEEEeCCEEEEEEEc----CCe-EEEEe-CCCC--EEEc-CEEEEcCCcc
Confidence 45 8999999999999765 222 22322 1342 2567 7999999965
No 139
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=58.94 E-value=57 Score=26.97 Aligned_cols=55 Identities=11% Similarity=0.195 Sum_probs=36.4
Q ss_pred hcCCCeEEEccceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEeceEEEecCCcccCCchh
Q psy8943 24 RLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLL 84 (134)
Q Consensus 24 ~~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~g~~~~~~a~~~vIlaaGai~tP~lL 84 (134)
+...++++++++.|++|.-+ ++.+ .+.+.+.+....+.+ +.+|+|.|..-...+|
T Consensus 223 l~~~gV~i~~~~~V~~i~~~----~~~v-~v~~~~gg~~~~i~~-D~vi~a~G~~p~~~~l 277 (462)
T PRK06416 223 LKKRGIKIKTGAKAKKVEQT----DDGV-TVTLEDGGKEETLEA-DYVLVAVGRRPNTENL 277 (462)
T ss_pred HHHcCCEEEeCCEEEEEEEe----CCEE-EEEEEeCCeeEEEEe-CEEEEeeCCccCCCCC
Confidence 34568999999999998654 1222 244443444456777 7899999976555544
No 140
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=58.43 E-value=29 Score=28.41 Aligned_cols=55 Identities=13% Similarity=0.202 Sum_probs=34.5
Q ss_pred cCCCeEEEccceEEEEEeccCCCCCeEEEEEEEeC--CeEEEEEeceEEEecCCcccCCchhhhccc
Q psy8943 25 LRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRD--GRKHIIRAKKEIISSAGAINSPQLLMVSGG 89 (134)
Q Consensus 25 ~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~--g~~~~~~a~~~vIlaaGai~tP~lLl~SGi 89 (134)
...+++++.++.|++|..+. . .|.+... +....... +.+|+|.|+ +|..+...|+
T Consensus 55 ~~~gv~~~~~~~V~~id~~~----~---~v~~~~~~~~~~~~~~y-d~lIiATG~--~p~~~~i~G~ 111 (427)
T TIGR03385 55 KKRGIDVKTNHEVIEVNDER----Q---TVVVRNNKTNETYEESY-DYLILSPGA--SPIVPNIEGI 111 (427)
T ss_pred HhcCCeEEecCEEEEEECCC----C---EEEEEECCCCCEEecCC-CEEEECCCC--CCCCCCCCCc
Confidence 45678998899999987652 2 2444432 22322226 799999998 5655544453
No 141
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=57.87 E-value=41 Score=29.46 Aligned_cols=50 Identities=14% Similarity=0.241 Sum_probs=35.6
Q ss_pred CCCeEEEccceEEEEEeccCCCCCeEEEEEEEe-----------------CCeEEEEEeceEEEecCCccc
Q psy8943 26 RKNLHIAMETQALRLLFDKSGPVPKAVGIEILR-----------------DGRKHIIRAKKEIISSAGAIN 79 (134)
Q Consensus 26 ~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~-----------------~g~~~~~~a~~~vIlaaGai~ 79 (134)
..++++++.+.+++|..+ .++++++|++.. .|..+.+.+ +.||+|.|..-
T Consensus 501 ~eGv~~~~~~~~~~i~~~---~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~a-D~Vi~AiG~~p 567 (639)
T PRK12809 501 EEGVEFQFNVQPQYIACD---EDGRLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPA-DVLIMAFGFQA 567 (639)
T ss_pred HcCCeEEeccCCEEEEEC---CCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEEC-CEEEECcCCCC
Confidence 457999999999998754 245788886532 133456777 79999999543
No 142
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=57.85 E-value=43 Score=28.38 Aligned_cols=54 Identities=9% Similarity=0.186 Sum_probs=39.5
Q ss_pred CCCeEEEccceEEEEEeccCCCCCeEEEEEEEe--CCeEEEEEeceEEEecCCcc-cCCchh
Q psy8943 26 RKNLHIAMETQALRLLFDKSGPVPKAVGIEILR--DGRKHIIRAKKEIISSAGAI-NSPQLL 84 (134)
Q Consensus 26 ~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~--~g~~~~~~a~~~vIlaaGai-~tP~lL 84 (134)
.+++.+++.+.|..+.-.. +|+ ..+.+.+ .++..++.. +.||||.|-- ..|.+|
T Consensus 290 ~~~v~l~~~~ev~~~~~~G---~g~-~~l~~~~~~~~~~~t~~~-D~vIlATGY~~~~P~fL 346 (436)
T COG3486 290 KPDVRLLSLSEVQSVEPAG---DGR-YRLTLRHHETGELETVET-DAVILATGYRRAVPSFL 346 (436)
T ss_pred CCCeeeccccceeeeecCC---Cce-EEEEEeeccCCCceEEEe-eEEEEecccccCCchhh
Confidence 5789999999999986552 244 5566655 566777887 7999999965 556555
No 143
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=57.83 E-value=29 Score=28.24 Aligned_cols=52 Identities=19% Similarity=0.225 Sum_probs=34.9
Q ss_pred hhhhhhhcCCCeEEEccceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEeceEEEecCCc
Q psy8943 18 AFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGA 77 (134)
Q Consensus 18 ~~l~~~~~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~g~~~~~~a~~~vIlaaGa 77 (134)
.||...+...+.+++..++|..+..+. ++.+.++... + ..+++ +.||.|-|.
T Consensus 99 ~~La~~A~~aGae~~~~~~~~~~~~~~---~~~~~~~~~~-~---~e~~a-~~vI~AdG~ 150 (396)
T COG0644 99 KWLAERAEEAGAELYPGTRVTGVIRED---DGVVVGVRAG-D---DEVRA-KVVIDADGV 150 (396)
T ss_pred HHHHHHHHHcCCEEEeceEEEEEEEeC---CcEEEEEEcC-C---EEEEc-CEEEECCCc
Confidence 455444456789999999999998873 2344333322 2 57778 688888774
No 144
>PRK11445 putative oxidoreductase; Provisional
Probab=56.74 E-value=54 Score=26.11 Aligned_cols=49 Identities=12% Similarity=0.196 Sum_probs=33.8
Q ss_pred CCCeEEEccceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEeceEEEecCCcccC
Q psy8943 26 RKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINS 80 (134)
Q Consensus 26 ~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~g~~~~~~a~~~vIlaaGai~t 80 (134)
..++++..++.|+.+..+. +. ..|.+..++...++.+ +.||.|.|+-..
T Consensus 110 ~~gv~v~~~~~v~~i~~~~----~~-~~v~~~~~g~~~~i~a-~~vV~AdG~~S~ 158 (351)
T PRK11445 110 PASVEVYHNSLCRKIWRED----DG-YHVIFRADGWEQHITA-RYLVGADGANSM 158 (351)
T ss_pred hcCCEEEcCCEEEEEEEcC----CE-EEEEEecCCcEEEEEe-CEEEECCCCCcH
Confidence 4579999999999987552 22 2355545665556788 788989887543
No 145
>KOG1298|consensus
Probab=56.60 E-value=15 Score=31.09 Aligned_cols=50 Identities=14% Similarity=0.105 Sum_probs=38.2
Q ss_pred hhcCCCeEEEccceEEEEEeccCCCCCeEEEEEEEe-CCeEEEEEeceEEEecCCcc
Q psy8943 23 IRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILR-DGRKHIIRAKKEIISSAGAI 78 (134)
Q Consensus 23 ~~~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~-~g~~~~~~a~~~vIlaaGai 78 (134)
+++.+|+++..+ +|..|+-+ ++.+.||+|.+ .|.+.+..| ..-|+|-|.+
T Consensus 157 a~slpNV~~eeG-tV~sLlee----~gvvkGV~yk~k~gee~~~~A-pLTvVCDGcf 207 (509)
T KOG1298|consen 157 AASLPNVRLEEG-TVKSLLEE----EGVVKGVTYKNKEGEEVEAFA-PLTVVCDGCF 207 (509)
T ss_pred HhcCCCeEEeee-eHHHHHhc----cCeEEeEEEecCCCceEEEec-ceEEEecchh
Confidence 456789987666 57777544 46999999998 566778888 7889998875
No 146
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=55.37 E-value=60 Score=27.14 Aligned_cols=55 Identities=15% Similarity=0.215 Sum_probs=36.8
Q ss_pred hcCCCeEEEccceEEEEEeccCCCCCeEEEEEEEe-CCeEEEEEeceEEEecCCcccCCchh
Q psy8943 24 RLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILR-DGRKHIIRAKKEIISSAGAINSPQLL 84 (134)
Q Consensus 24 ~~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~-~g~~~~~~a~~~vIlaaGai~tP~lL 84 (134)
+...+++|++++.|++|.-+ ++.+ .|.+.+ ++....+.+ +.+++|.|..-....|
T Consensus 234 l~~~gi~i~~~~~v~~i~~~----~~~v-~v~~~~~~g~~~~i~~-D~vl~a~G~~p~~~~l 289 (475)
T PRK06327 234 FTKQGLDIHLGVKIGEIKTG----GKGV-SVAYTDADGEAQTLEV-DKLIVSIGRVPNTDGL 289 (475)
T ss_pred HHHcCcEEEeCcEEEEEEEc----CCEE-EEEEEeCCCceeEEEc-CEEEEccCCccCCCCC
Confidence 34568999999999999654 1222 355544 355456777 6899999976555533
No 147
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=54.80 E-value=44 Score=27.37 Aligned_cols=49 Identities=20% Similarity=0.309 Sum_probs=32.6
Q ss_pred hcCCCeEEEccceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEeceEEEecCCcccCCc
Q psy8943 24 RLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQ 82 (134)
Q Consensus 24 ~~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~g~~~~~~a~~~vIlaaGai~tP~ 82 (134)
+.+.+++|.+++.|+.|..+ ++ ...|.. ++. .+.+ +.||+|+|....|.
T Consensus 115 l~~~gv~i~~~~~V~~i~~~----~~-~~~v~~--~~~--~i~a-d~VIlAtG~~s~p~ 163 (400)
T TIGR00275 115 LKELGVEILTNSKVKSIKKD----DN-GFGVET--SGG--EYEA-DKVILATGGLSYPQ 163 (400)
T ss_pred HHHCCCEEEeCCEEEEEEec----CC-eEEEEE--CCc--EEEc-CEEEECCCCcccCC
Confidence 44568999999999998543 12 223433 333 4566 79999999865543
No 148
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=54.11 E-value=76 Score=26.97 Aligned_cols=50 Identities=16% Similarity=0.294 Sum_probs=34.6
Q ss_pred CCCeEEEccceEEEEEeccCCCCCeEEEEEEEe-CCeEEEEEeceEEEecCCcccCC
Q psy8943 26 RKNLHIAMETQALRLLFDKSGPVPKAVGIEILR-DGRKHIIRAKKEIISSAGAINSP 81 (134)
Q Consensus 26 ~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~-~g~~~~~~a~~~vIlaaGai~tP 81 (134)
.++++|..+++|+.|..+. +.+ .|.+.+ +|...++++ +.||.|-|+-.+.
T Consensus 126 ~~gv~v~~g~~v~~i~~~~----~~v-~v~~~~~~G~~~~i~a-d~vVgADG~~S~v 176 (538)
T PRK06183 126 FPHVRVRFGHEVTALTQDD----DGV-TVTLTDADGQRETVRA-RYVVGCDGANSFV 176 (538)
T ss_pred CCCcEEEcCCEEEEEEEcC----CeE-EEEEEcCCCCEEEEEE-EEEEecCCCchhH
Confidence 3689999999999997652 222 355554 565667888 6888887764443
No 149
>PLN02612 phytoene desaturase
Probab=53.60 E-value=25 Score=30.44 Aligned_cols=45 Identities=4% Similarity=0.144 Sum_probs=32.5
Q ss_pred CCCeEEEccceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEeceEEEecCCc
Q psy8943 26 RKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGA 77 (134)
Q Consensus 26 ~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~g~~~~~~a~~~vIlaaGa 77 (134)
+.+.+|.+++.|++|..+. ++++.+|.+. +|. .+.+ +.||++...
T Consensus 320 ~~G~~I~l~~~V~~I~~~~---~g~v~~v~~~-~G~--~~~a-d~VI~a~p~ 364 (567)
T PLN02612 320 SLGGEVRLNSRIKKIELND---DGTVKHFLLT-NGS--VVEG-DVYVSATPV 364 (567)
T ss_pred hcCCEEEeCCeeeEEEECC---CCcEEEEEEC-CCc--EEEC-CEEEECCCH
Confidence 3578999999999998862 3567677764 453 3566 688888753
No 150
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=53.48 E-value=40 Score=27.62 Aligned_cols=57 Identities=16% Similarity=0.190 Sum_probs=37.6
Q ss_pred hcCCCeEEEccceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEeceEEEecCCcccCCchhhhcccc
Q psy8943 24 RLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLLMVSGGS 90 (134)
Q Consensus 24 ~~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~g~~~~~~a~~~vIlaaGai~tP~lLl~SGig 90 (134)
+...+++++++++|++|.-+ +++..+.. ++. .+.+ +.+|+|.|..-+..+|..+|+.
T Consensus 201 l~~~gI~v~~~~~v~~i~~~-----~~~~~v~~--~~~--~i~~-d~vi~a~G~~p~~~~l~~~gl~ 257 (444)
T PRK09564 201 LRENGVELHLNEFVKSLIGE-----DKVEGVVT--DKG--EYEA-DVVIVATGVKPNTEFLEDTGLK 257 (444)
T ss_pred HHHCCCEEEcCCEEEEEecC-----CcEEEEEe--CCC--EEEc-CEEEECcCCCcCHHHHHhcCcc
Confidence 34567999999999998422 33444432 332 3666 6899999976555667667664
No 151
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=53.43 E-value=47 Score=26.83 Aligned_cols=47 Identities=17% Similarity=0.225 Sum_probs=28.3
Q ss_pred cCCCeEEEccceEEEEEeccCCCCCeEEEEEEEe--CCeEEEEEeceEEEecCC
Q psy8943 25 LRKNLHIAMETQALRLLFDKSGPVPKAVGIEILR--DGRKHIIRAKKEIISSAG 76 (134)
Q Consensus 25 ~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~--~g~~~~~~a~~~vIlaaG 76 (134)
.+..++|+.++.|+.+.... ++ -..+.+.+ .+....+.+ +.||+|.|
T Consensus 290 g~~~~~l~~~~~v~~~~~~~---~~-~~~l~~~~~~~~~~~~~~~-D~VilATG 338 (341)
T PF13434_consen 290 GRGRLRLLPNTEVTSAEQDG---DG-GVRLTLRHRQTGEEETLEV-DAVILATG 338 (341)
T ss_dssp T---SEEETTEEEEEEEEES----S-SEEEEEEETTT--EEEEEE-SEEEE---
T ss_pred CCCCeEEeCCCEEEEEEECC---CC-EEEEEEEECCCCCeEEEec-CEEEEcCC
Confidence 45579999999999998773 22 22455555 566677777 79999988
No 152
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=53.42 E-value=44 Score=27.63 Aligned_cols=46 Identities=15% Similarity=0.235 Sum_probs=31.8
Q ss_pred cCCCeEEEccceEEEEEeccCCCCCeEEEEEEEe--CCeEEEEEeceEEEecCCcc
Q psy8943 25 LRKNLHIAMETQALRLLFDKSGPVPKAVGIEILR--DGRKHIIRAKKEIISSAGAI 78 (134)
Q Consensus 25 ~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~--~g~~~~~~a~~~vIlaaGai 78 (134)
++.+++++.++.|++|..+. + .|.+.+ .+....+.. +.+|+|.|+.
T Consensus 69 ~~~~i~v~~~~~V~~Id~~~-----~--~v~~~~~~~~~~~~~~y-d~lviAtGs~ 116 (438)
T PRK13512 69 DRKQITVKTYHEVIAINDER-----Q--TVTVLNRKTNEQFEESY-DKLILSPGAS 116 (438)
T ss_pred HhCCCEEEeCCEEEEEECCC-----C--EEEEEECCCCcEEeeec-CEEEECCCCC
Confidence 45689999999999997762 2 344443 233444566 7899999975
No 153
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=53.08 E-value=9.5 Score=33.45 Aligned_cols=53 Identities=21% Similarity=0.360 Sum_probs=37.5
Q ss_pred hcCCCeEEEccceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEeceEEEecCCcccCCchh
Q psy8943 24 RLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLL 84 (134)
Q Consensus 24 ~~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~g~~~~~~a~~~vIlaaGai~tP~lL 84 (134)
.+.+||+|+.. .|+.|+++. +.++.||... .|. .+.| +.|||++|++-.-++.
T Consensus 111 e~~~NL~l~q~-~v~dli~e~---~~~v~GV~t~-~G~--~~~a-~aVVlTTGTFL~G~I~ 163 (621)
T COG0445 111 ENQPNLHLLQG-EVEDLIVEE---GQRVVGVVTA-DGP--EFHA-KAVVLTTGTFLRGKIH 163 (621)
T ss_pred hcCCCceehHh-hhHHHhhcC---CCeEEEEEeC-CCC--eeec-CEEEEeecccccceEE
Confidence 36789999987 577787762 2368888755 443 4566 7899999987655554
No 154
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=51.83 E-value=40 Score=25.87 Aligned_cols=47 Identities=19% Similarity=0.299 Sum_probs=30.5
Q ss_pred CCCeEEEccceEEEEEeccCCCCCeEEEEEEE-eCCeEEEEEeceEEEecCCc
Q psy8943 26 RKNLHIAMETQALRLLFDKSGPVPKAVGIEIL-RDGRKHIIRAKKEIISSAGA 77 (134)
Q Consensus 26 ~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~-~~g~~~~~~a~~~vIlaaGa 77 (134)
+.+++|..+++|+.+..+. ..++.+... .+|....+.+ +.||.|-|+
T Consensus 123 ~~gv~i~~~~~v~~~~~d~----~~~~~~~~~~~~g~~~~i~a-dlvVgADG~ 170 (356)
T PF01494_consen 123 ERGVDIRFGTRVVSIEQDD----DGVTVVVRDGEDGEEETIEA-DLVVGADGA 170 (356)
T ss_dssp HHTEEEEESEEEEEEEEET----TEEEEEEEETCTCEEEEEEE-SEEEE-SGT
T ss_pred hhhhhheeeeecccccccc----cccccccccccCCceeEEEE-eeeecccCc
Confidence 3459999999999987662 333332222 2677778888 566666664
No 155
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=51.81 E-value=44 Score=23.65 Aligned_cols=49 Identities=12% Similarity=0.302 Sum_probs=34.6
Q ss_pred cCCCeEEEccceEEEEEeccCCCCCeE----EEEEEEeCCeEEEEEeceEEEecCCcc
Q psy8943 25 LRKNLHIAMETQALRLLFDKSGPVPKA----VGIEILRDGRKHIIRAKKEIISSAGAI 78 (134)
Q Consensus 25 ~~~nl~i~t~~~V~ri~~~~~~~~~~a----~gV~~~~~g~~~~~~a~~~vIlaaGai 78 (134)
...++++..++.|.+|..+. ..+ ..+.....+....+.+ +.+|+|.|.-
T Consensus 69 ~~~~v~~~~~~~v~~i~~~~----~~~~~~~~~~~~~~~~~~~~~~~-d~lviAtG~~ 121 (201)
T PF07992_consen 69 KNRGVEIRLNAKVVSIDPES----KRVVCPAVTIQVVETGDGREIKY-DYLVIATGSR 121 (201)
T ss_dssp HHHTHEEEHHHTEEEEEEST----TEEEETCEEEEEEETTTEEEEEE-EEEEEESTEE
T ss_pred ccceEEEeeccccccccccc----cccccCcccceeeccCCceEecC-CeeeecCccc
Confidence 35689999999999997762 232 2333444566677888 7999999954
No 156
>PRK07045 putative monooxygenase; Reviewed
Probab=51.76 E-value=59 Score=26.03 Aligned_cols=46 Identities=20% Similarity=0.273 Sum_probs=29.8
Q ss_pred cCCCeEEEccceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEeceEEEecCCc
Q psy8943 25 LRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGA 77 (134)
Q Consensus 25 ~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~g~~~~~~a~~~vIlaaGa 77 (134)
..+++++..+++|+.|..+. ++.++.|.+. +|. ++.+ +.||-|-|+
T Consensus 118 ~~~gv~i~~~~~v~~i~~~~---~~~~~~v~~~-~g~--~~~~-~~vIgADG~ 163 (388)
T PRK07045 118 GLPNVRLRFETSIERIERDA---DGTVTSVTLS-DGE--RVAP-TVLVGADGA 163 (388)
T ss_pred cCCCeeEEeCCEEEEEEECC---CCcEEEEEeC-CCC--EEEC-CEEEECCCC
Confidence 45789999999999997762 3345566654 443 4555 455555554
No 157
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=51.53 E-value=61 Score=26.12 Aligned_cols=48 Identities=19% Similarity=0.157 Sum_probs=31.0
Q ss_pred cCCCeEEEccceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEeceEEEecCCc
Q psy8943 25 LRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGA 77 (134)
Q Consensus 25 ~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~g~~~~~~a~~~vIlaaGa 77 (134)
...++++..+++|+++.-.. +....|.+..+|...++.+ +.||.|-|+
T Consensus 114 ~~~gv~v~~~~~v~~i~~~~----~~~~~V~~~~~G~~~~i~a-d~vVgADG~ 161 (392)
T PRK08243 114 LAAGGPIRFEASDVALHDFD----SDRPYVTYEKDGEEHRLDC-DFIAGCDGF 161 (392)
T ss_pred HhCCCeEEEeeeEEEEEecC----CCceEEEEEcCCeEEEEEe-CEEEECCCC
Confidence 34678999999999885311 2233566655777677888 555555554
No 158
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=51.07 E-value=59 Score=30.15 Aligned_cols=60 Identities=15% Similarity=0.195 Sum_probs=44.5
Q ss_pred cCCCeEEEccceEEEEEeccCCCCCeEEEEEEEe-CCeEEEEEeceEEEecCCcccCCchhhhcccc
Q psy8943 25 LRKNLHIAMETQALRLLFDKSGPVPKAVGIEILR-DGRKHIIRAKKEIISSAGAINSPQLLMVSGGS 90 (134)
Q Consensus 25 ~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~-~g~~~~~~a~~~vIlaaGai~tP~lLl~SGig 90 (134)
.+.+++|++++.|+++.-+ +++++|++.. ++....+.+ +.|+++.|..-+..|+...|..
T Consensus 362 ~~~GV~i~~~~~v~~i~g~-----~~v~~V~l~~~~g~~~~i~~-D~V~va~G~~Pnt~L~~~lg~~ 422 (985)
T TIGR01372 362 RELGIEVLTGHVVAATEGG-----KRVSGVAVARNGGAGQRLEA-DALAVSGGWTPVVHLFSQRGGK 422 (985)
T ss_pred HHcCCEEEcCCeEEEEecC-----CcEEEEEEEecCCceEEEEC-CEEEEcCCcCchhHHHHhcCCC
Confidence 4568999999999998532 4677888774 445556777 7999999988777777666543
No 159
>KOG2311|consensus
Probab=50.82 E-value=21 Score=31.20 Aligned_cols=55 Identities=18% Similarity=0.291 Sum_probs=37.8
Q ss_pred cCCCeEEEccceEEEEEeccCCCCC-eEEEEEEEeCCeEEEEEeceEEEecCCcccCCchh
Q psy8943 25 LRKNLHIAMETQALRLLFDKSGPVP-KAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLL 84 (134)
Q Consensus 25 ~~~nl~i~t~~~V~ri~~~~~~~~~-~a~gV~~~~~g~~~~~~a~~~vIlaaGai~tP~lL 84 (134)
..+||.|+.++ |..|++.+.+++. +++||...+ |. .++| +.||+..|++-+.+|-
T Consensus 136 st~nL~ire~~-V~dliv~~~~~~~~~~~gV~l~d-gt--~v~a-~~VilTTGTFL~~~I~ 191 (679)
T KOG2311|consen 136 STPNLEIREGA-VADLIVEDPDDGHCVVSGVVLVD-GT--VVYA-ESVILTTGTFLRGQIN 191 (679)
T ss_pred cCCcchhhhhh-hhheeeccCCCCceEEEEEEEec-Cc--Eecc-ceEEEeeccceeeEEe
Confidence 46799999886 5555555443333 688888774 32 4567 7899999988777765
No 160
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=50.68 E-value=77 Score=26.45 Aligned_cols=57 Identities=9% Similarity=0.126 Sum_probs=36.0
Q ss_pred hhhcCCCeEEEccceEEEEEeccCCCCCeEEEEEEE--eCCeEEEEEeceEEEecCCcccCCchh
Q psy8943 22 PIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEIL--RDGRKHIIRAKKEIISSAGAINSPQLL 84 (134)
Q Consensus 22 ~~~~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~--~~g~~~~~~a~~~vIlaaGai~tP~lL 84 (134)
..+...+++|++++.|++|.-+ ++.+ .+.+. .++....+.+ +.|++|.|..-....|
T Consensus 223 ~~l~~~gV~i~~~~~V~~i~~~----~~~v-~v~~~~~~~g~~~~i~~-D~vi~a~G~~pn~~~l 281 (466)
T PRK06115 223 KALTKQGMKFKLGSKVTGATAG----ADGV-SLTLEPAAGGAAETLQA-DYVLVAIGRRPYTQGL 281 (466)
T ss_pred HHHHhcCCEEEECcEEEEEEEc----CCeE-EEEEEEcCCCceeEEEe-CEEEEccCCccccccC
Confidence 3344568999999999998643 1122 23333 2344456777 7999999976544443
No 161
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=49.06 E-value=61 Score=27.16 Aligned_cols=57 Identities=16% Similarity=0.249 Sum_probs=36.4
Q ss_pred CCeEEEccceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEeceEEEecCCcccCCchhhhcc
Q psy8943 27 KNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLLMVSG 88 (134)
Q Consensus 27 ~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~g~~~~~~a~~~vIlaaGai~tP~lLl~SG 88 (134)
-..+|..++.|+.+.++. ++..=-|.+.+.+... +.+ +.||+|+|....|.+=-..|
T Consensus 97 ~~~~i~~~~~v~~~~~~~---~~~~w~V~~~~~~~~~-~~a-~~vV~ATG~~~~P~iP~~~G 153 (443)
T COG2072 97 LRFQIRFNTRVEVADWDE---DTKRWTVTTSDGGTGE-LTA-DFVVVATGHLSEPYIPDFAG 153 (443)
T ss_pred ceeEEEcccceEEEEecC---CCCeEEEEEcCCCeee-Eec-CEEEEeecCCCCCCCCCCCC
Confidence 346777777777787773 2223334444333333 667 89999999999887655444
No 162
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=49.02 E-value=25 Score=30.26 Aligned_cols=65 Identities=17% Similarity=0.275 Sum_probs=37.5
Q ss_pred hhhhhhhcCCCe--EEEccceEEEEEeccCC-CCCeEEEEEEEeCCeEEEEEeceEEEecCCcccCCchh
Q psy8943 18 AFLRPIRLRKNL--HIAMETQALRLLFDKSG-PVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLL 84 (134)
Q Consensus 18 ~~l~~~~~~~nl--~i~t~~~V~ri~~~~~~-~~~~a~gV~~~~~g~~~~~~a~~~vIlaaGai~tP~lL 84 (134)
.||...++.=+| +|..++.|++|...... ..++ -.|...++|+..+-.- +.||+|.|....|.+=
T Consensus 88 ~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~-W~V~~~~~g~~~~~~f-D~VvvatG~~~~P~~P 155 (531)
T PF00743_consen 88 EYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGK-WEVTTENDGKEETEEF-DAVVVATGHFSKPNIP 155 (531)
T ss_dssp HHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETE-EEEEETTTTEEEEEEE-CEEEEEE-SSSCESB-
T ss_pred HHHHHHHhhhCCcceEEEccEEeEeeeccccCCCce-EEEEeecCCeEEEEEe-CeEEEcCCCcCCCCCC
Confidence 566554444344 68999999999765210 1111 1233333565443333 6799999998888764
No 163
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=48.25 E-value=20 Score=29.79 Aligned_cols=50 Identities=10% Similarity=-0.030 Sum_probs=38.6
Q ss_pred CCCeEEEccceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEeceEEEecCCcccCC
Q psy8943 26 RKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSP 81 (134)
Q Consensus 26 ~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~g~~~~~~a~~~vIlaaGai~tP 81 (134)
+.+-.++++-.|.+..+. +++++.|..+ +.....+++ +++|||+|.+-|-
T Consensus 270 ~~Gg~~m~Gd~V~~a~~~----~~~v~~i~tr-n~~diP~~a-~~~VLAsGsffsk 319 (421)
T COG3075 270 QLGGLWMPGDEVKKATCK----GGRVTEIYTR-NHADIPLRA-DFYVLASGSFFSK 319 (421)
T ss_pred HcCceEecCCceeeeeee----CCeEEEEEec-ccccCCCCh-hHeeeeccccccc
Confidence 345668888899998887 4688888777 666667888 7999999987554
No 164
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=47.96 E-value=37 Score=20.87 Aligned_cols=33 Identities=9% Similarity=0.091 Sum_probs=22.9
Q ss_pred hhhhhcCCCeEEEccceEEEEEeccCCCCCeEEEEEEE
Q psy8943 20 LRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEIL 57 (134)
Q Consensus 20 l~~~~~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~ 57 (134)
+.......|+++.+++.+++|.-+. ++ ++ |.+.
T Consensus 46 ~~~~l~~~gV~v~~~~~v~~i~~~~---~~-~~-V~~~ 78 (80)
T PF00070_consen 46 LEEYLRKRGVEVHTNTKVKEIEKDG---DG-VE-VTLE 78 (80)
T ss_dssp HHHHHHHTTEEEEESEEEEEEEEET---TS-EE-EEEE
T ss_pred HHHHHHHCCCEEEeCCEEEEEEEeC---CE-EE-EEEe
Confidence 3333445699999999999998662 33 55 6654
No 165
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=47.83 E-value=65 Score=26.03 Aligned_cols=45 Identities=16% Similarity=0.255 Sum_probs=32.1
Q ss_pred hcCCCeEEEccceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEeceEEEecCC
Q psy8943 24 RLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAG 76 (134)
Q Consensus 24 ~~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~g~~~~~~a~~~vIlaaG 76 (134)
.+.+|++++.++.|+.+..+. ..++ |.+..+|. .+.+ +.+|-|=|
T Consensus 115 ~~~~~v~~~~~~~v~~~~~~~----~~v~-v~l~~dG~--~~~a-~llVgADG 159 (387)
T COG0654 115 RALPNVTLRFGAEVEAVEQDG----DGVT-VTLSFDGE--TLDA-DLLVGADG 159 (387)
T ss_pred hhCCCcEEEcCceEEEEEEcC----CceE-EEEcCCCc--EEec-CEEEECCC
Confidence 456889999999999998772 3565 66654555 6777 56666655
No 166
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=47.56 E-value=71 Score=25.64 Aligned_cols=58 Identities=19% Similarity=0.215 Sum_probs=38.8
Q ss_pred hcCCCeEEEccceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEeceEEEecCCcccCCchhhhcccc
Q psy8943 24 RLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLLMVSGGS 90 (134)
Q Consensus 24 ~~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~g~~~~~~a~~~vIlaaGai~tP~lLl~SGig 90 (134)
+...++++.+++.|+++.-+ .+. ..|.+. ++. ++.+ +.||+|.|..-.+.++..+|+.
T Consensus 193 l~~~gV~i~~~~~v~~i~~~----~~~-~~v~~~-~g~--~i~~-D~vI~a~G~~p~~~l~~~~gl~ 250 (377)
T PRK04965 193 LTEMGVHLLLKSQLQGLEKT----DSG-IRATLD-SGR--SIEV-DAVIAAAGLRPNTALARRAGLA 250 (377)
T ss_pred HHhCCCEEEECCeEEEEEcc----CCE-EEEEEc-CCc--EEEC-CEEEECcCCCcchHHHHHCCCC
Confidence 34568999999999998654 122 234432 443 4666 7999999977666676666664
No 167
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=47.55 E-value=91 Score=25.89 Aligned_cols=51 Identities=14% Similarity=-0.001 Sum_probs=34.1
Q ss_pred hcCCCeEEEccceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEeceEEEecCCcccCCc
Q psy8943 24 RLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQ 82 (134)
Q Consensus 24 ~~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~g~~~~~~a~~~vIlaaGai~tP~ 82 (134)
+...++++++++.|++|.-+ +. .+.+..++....+.+ +.+|+|.|..-...
T Consensus 221 L~~~GI~i~~~~~V~~i~~~----~~---~v~~~~~g~~~~i~~-D~vivA~G~~p~~~ 271 (458)
T PRK06912 221 LENDGVKIFTGAALKGLNSY----KK---QALFEYEGSIQEVNA-EFVLVSVGRKPRVQ 271 (458)
T ss_pred HHHCCCEEEECCEEEEEEEc----CC---EEEEEECCceEEEEe-CEEEEecCCccCCC
Confidence 34568999999999998643 12 234444555456777 78999999654443
No 168
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=46.14 E-value=51 Score=27.40 Aligned_cols=44 Identities=18% Similarity=0.179 Sum_probs=29.2
Q ss_pred hcCCCeEEEccceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEeceEEEecCCcc
Q psy8943 24 RLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAI 78 (134)
Q Consensus 24 ~~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~g~~~~~~a~~~vIlaaGai 78 (134)
+.+.+++|++++.|+.|.-. + ...|.. .+| .+.+ +.||+|+|+.
T Consensus 193 a~~~Gv~i~~~t~V~~i~~~-----~-~~~v~t-~~g---~v~A-~~VV~Atga~ 236 (460)
T TIGR03329 193 ALELGVEIHENTPMTGLEEG-----Q-PAVVRT-PDG---QVTA-DKVVLALNAW 236 (460)
T ss_pred HHHcCCEEECCCeEEEEeeC-----C-ceEEEe-CCc---EEEC-CEEEEccccc
Confidence 34568999999999998521 1 122321 234 4677 7999999975
No 169
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=46.04 E-value=75 Score=26.38 Aligned_cols=55 Identities=20% Similarity=0.403 Sum_probs=37.1
Q ss_pred cCCCeEEEccceEEEEEeccCCCCCeEEEEEEEe----------------CCeEEEEEeceEEEecCCcccCCchh
Q psy8943 25 LRKNLHIAMETQALRLLFDKSGPVPKAVGIEILR----------------DGRKHIIRAKKEIISSAGAINSPQLL 84 (134)
Q Consensus 25 ~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~----------------~g~~~~~~a~~~vIlaaGai~tP~lL 84 (134)
...+++|++++.+.+|.-+ ++.+++|.+.. ++....+.+ +.||+|.|..-...++
T Consensus 322 ~~~GV~i~~~~~v~~i~~~----~~~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~-D~vi~a~G~~p~~~l~ 392 (457)
T PRK11749 322 KEEGVEFEWLAAPVEILGD----EGRVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPA-DLVIKAIGQTPNPLIL 392 (457)
T ss_pred HHCCCEEEecCCcEEEEec----CCceEEEEEEEEEecCcCCCCCcccCCCCceEEEEC-CEEEECccCCCCchhh
Confidence 4568999999999998643 23456776542 234456777 7999999975554444
No 170
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=45.83 E-value=73 Score=26.05 Aligned_cols=46 Identities=11% Similarity=0.218 Sum_probs=31.3
Q ss_pred cCCCeEEEccceEEEEEeccCCCCCeEEEEEEEe--CCeEEEEEeceEEEecCCcc
Q psy8943 25 LRKNLHIAMETQALRLLFDKSGPVPKAVGIEILR--DGRKHIIRAKKEIISSAGAI 78 (134)
Q Consensus 25 ~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~--~g~~~~~~a~~~vIlaaGai 78 (134)
...+++++.++.|++|..+. . .|.+.+ ++....+.. +.+|+|.|+-
T Consensus 67 ~~~gv~~~~~~~V~~id~~~----~---~v~~~~~~~~~~~~~~y-d~lviAtG~~ 114 (444)
T PRK09564 67 IKSGIDVKTEHEVVKVDAKN----K---TITVKNLKTGSIFNDTY-DKLMIATGAR 114 (444)
T ss_pred HHCCCeEEecCEEEEEECCC----C---EEEEEECCCCCEEEecC-CEEEECCCCC
Confidence 45689999999999997762 1 344443 344444446 7899999974
No 171
>PRK08244 hypothetical protein; Provisional
Probab=45.47 E-value=96 Score=25.92 Aligned_cols=48 Identities=15% Similarity=0.178 Sum_probs=32.3
Q ss_pred cCCCeEEEccceEEEEEeccCCCCCeEEEEEEEe-CCeEEEEEeceEEEecCCccc
Q psy8943 25 LRKNLHIAMETQALRLLFDKSGPVPKAVGIEILR-DGRKHIIRAKKEIISSAGAIN 79 (134)
Q Consensus 25 ~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~-~g~~~~~~a~~~vIlaaGai~ 79 (134)
...+++|..++.|+.+..+. +.+ .|.+.+ +| ...+++ +.||.|.|+-.
T Consensus 111 ~~~gv~v~~~~~v~~i~~~~----~~v-~v~~~~~~g-~~~i~a-~~vVgADG~~S 159 (493)
T PRK08244 111 RSLGVEIFRGAEVLAVRQDG----DGV-EVVVRGPDG-LRTLTS-SYVVGADGAGS 159 (493)
T ss_pred HHcCCeEEeCCEEEEEEEcC----CeE-EEEEEeCCc-cEEEEe-CEEEECCCCCh
Confidence 34579999999999986652 223 244544 34 346778 78888888743
No 172
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=45.39 E-value=1.1e+02 Score=25.46 Aligned_cols=56 Identities=13% Similarity=0.216 Sum_probs=36.1
Q ss_pred hcCCCeEEEccceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEeceEEEecCCcccCCchh
Q psy8943 24 RLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLL 84 (134)
Q Consensus 24 ~~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~g~~~~~~a~~~vIlaaGai~tP~lL 84 (134)
+...+++|++++.|++|..+. .+.+..+. ..+|....+.+ +.+|+|.|..-....|
T Consensus 231 l~~~gI~i~~~~~v~~i~~~~---~~~~~~~~-~~~g~~~~i~~-D~vi~a~G~~p~~~~l 286 (472)
T PRK05976 231 LKKLGVRVVTGAKVLGLTLKK---DGGVLIVA-EHNGEEKTLEA-DKVLVSVGRRPNTEGI 286 (472)
T ss_pred HHhcCCEEEeCcEEEEEEEec---CCCEEEEE-EeCCceEEEEe-CEEEEeeCCccCCCCC
Confidence 445689999999999996521 12332222 23565556777 6899999976554433
No 173
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=44.44 E-value=82 Score=25.08 Aligned_cols=59 Identities=15% Similarity=0.369 Sum_probs=39.0
Q ss_pred cCCCeEEEccceEEEEEeccCCCCCeEEEEEEEe-----------------CCeEEEEEeceEEEecCCcccCCchhhh-
Q psy8943 25 LRKNLHIAMETQALRLLFDKSGPVPKAVGIEILR-----------------DGRKHIIRAKKEIISSAGAINSPQLLMV- 86 (134)
Q Consensus 25 ~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~-----------------~g~~~~~~a~~~vIlaaGai~tP~lLl~- 86 (134)
...++++++++.+.++.-+ +++.+|++.+ ++....+.+ +.+|++.|..-++.++..
T Consensus 221 ~~~gi~i~~~~~v~~i~~~-----~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-D~vi~a~G~~p~~~l~~~~ 294 (352)
T PRK12770 221 IARGVEFLELVTPVRIIGE-----GRVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEA-DTVVFAIGEIPTPPFAKEC 294 (352)
T ss_pred HHcCCEEeeccCceeeecC-----CcEeEEEEEEEEecCcCcccCcCceecCCCeEEEEC-CEEEECcccCCCchhhhcc
Confidence 4457999999988887522 3455665432 344456777 799999998766655443
Q ss_pred ccc
Q psy8943 87 SGG 89 (134)
Q Consensus 87 SGi 89 (134)
.|+
T Consensus 295 ~g~ 297 (352)
T PRK12770 295 LGI 297 (352)
T ss_pred cCc
Confidence 454
No 174
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=44.33 E-value=90 Score=24.56 Aligned_cols=47 Identities=17% Similarity=0.304 Sum_probs=29.5
Q ss_pred hhcCCCeEEEccceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEeceEEEecCCcc
Q psy8943 23 IRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAI 78 (134)
Q Consensus 23 ~~~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~g~~~~~~a~~~vIlaaGai 78 (134)
+.+.++++|+.++.|+.|..+. +.+ .|.+. +|. .+.+ +.||.|.|.-
T Consensus 116 ~~~~~~~~v~~~~~v~~i~~~~----~~~-~v~~~-~g~--~~~~-~~vi~adG~~ 162 (385)
T TIGR01988 116 LQEYPNVTLLCPARVVELPRHS----DHV-ELTLD-DGQ--QLRA-RLLVGADGAN 162 (385)
T ss_pred HHhCCCcEEecCCeEEEEEecC----Cee-EEEEC-CCC--EEEe-eEEEEeCCCC
Confidence 3344569999999999997652 223 23332 443 3566 6777777753
No 175
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=43.66 E-value=1.1e+02 Score=25.94 Aligned_cols=49 Identities=12% Similarity=0.118 Sum_probs=31.3
Q ss_pred cCCCeEEEccceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEeceEEEecCCccc
Q psy8943 25 LRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAIN 79 (134)
Q Consensus 25 ~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~g~~~~~~a~~~vIlaaGai~ 79 (134)
..++++|..++.|+.+..+. +.+ .+.+...+...++++ +.||.|.|+-.
T Consensus 137 ~~~~v~v~~~~~v~~i~~~~----~~v-~v~~~~~~g~~~i~a-d~vVgADG~~S 185 (547)
T PRK08132 137 ALPNIDLRWKNKVTGLEQHD----DGV-TLTVETPDGPYTLEA-DWVIACDGARS 185 (547)
T ss_pred hCCCcEEEeCCEEEEEEEcC----CEE-EEEEECCCCcEEEEe-CEEEECCCCCc
Confidence 34679999999999987652 222 233433222346777 68888888643
No 176
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=43.66 E-value=59 Score=25.73 Aligned_cols=38 Identities=13% Similarity=0.182 Sum_probs=26.2
Q ss_pred CCeEEEccceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEeceEEEecCCcc
Q psy8943 27 KNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAI 78 (134)
Q Consensus 27 ~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~g~~~~~~a~~~vIlaaGai 78 (134)
.+++|++++.|+.|.- + .|.. .+| .+.+ +.||+|+|+.
T Consensus 159 ~Gv~i~~~t~V~~i~~------~---~v~t-~~g---~i~a-~~VV~A~G~~ 196 (365)
T TIGR03364 159 HGVEFHWNTAVTSVET------G---TVRT-SRG---DVHA-DQVFVCPGAD 196 (365)
T ss_pred CCCEEEeCCeEEEEec------C---eEEe-CCC---cEEe-CEEEECCCCC
Confidence 4899999999998841 1 2322 233 2466 7999999984
No 177
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=43.54 E-value=49 Score=25.77 Aligned_cols=45 Identities=20% Similarity=0.195 Sum_probs=28.8
Q ss_pred CeEEEccceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEeceEEEecCCcccCC
Q psy8943 28 NLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSP 81 (134)
Q Consensus 28 nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~g~~~~~~a~~~vIlaaGai~tP 81 (134)
+.+|.+++.|++|..+. +++ .|.+. +|. ++.+ +.||+|+..-...
T Consensus 223 g~~i~l~~~V~~I~~~~----~~v-~v~~~-~g~--~~~a-d~VI~a~p~~~l~ 267 (450)
T PF01593_consen 223 GGEIRLNTPVTRIERED----GGV-TVTTE-DGE--TIEA-DAVISAVPPSVLK 267 (450)
T ss_dssp GGGEESSEEEEEEEEES----SEE-EEEET-TSS--EEEE-SEEEE-S-HHHHH
T ss_pred CceeecCCcceeccccc----ccc-ccccc-cce--EEec-ceeeecCchhhhh
Confidence 45899999999999883 333 34444 443 6677 6899998754333
No 178
>PRK06184 hypothetical protein; Provisional
Probab=43.30 E-value=1e+02 Score=25.88 Aligned_cols=49 Identities=8% Similarity=0.153 Sum_probs=31.2
Q ss_pred cCCCeEEEccceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEeceEEEecCCccc
Q psy8943 25 LRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAIN 79 (134)
Q Consensus 25 ~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~g~~~~~~a~~~vIlaaGai~ 79 (134)
...+++|..+++|+.|..+. +.+ .|.+...+....+++ +.||.|.|+-.
T Consensus 120 ~~~gv~i~~~~~v~~i~~~~----~~v-~v~~~~~~~~~~i~a-~~vVgADG~~S 168 (502)
T PRK06184 120 AELGHRVEFGCELVGFEQDA----DGV-TARVAGPAGEETVRA-RYLVGADGGRS 168 (502)
T ss_pred HHCCCEEEeCcEEEEEEEcC----CcE-EEEEEeCCCeEEEEe-CEEEECCCCch
Confidence 34479999999999997652 222 233333223346777 78888888643
No 179
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=42.89 E-value=1e+02 Score=26.00 Aligned_cols=57 Identities=7% Similarity=-0.022 Sum_probs=36.5
Q ss_pred hhcCCCeEEEccceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEeceEEEecCCcccCCchhh
Q psy8943 23 IRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLLM 85 (134)
Q Consensus 23 ~~~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~g~~~~~~a~~~vIlaaGai~tP~lLl 85 (134)
.+...+++|++++.+++|.-. ++. ..|.+.+.....++.+ +.|++|.|..-.+.+|.
T Consensus 229 ~L~~~gV~i~~~~~v~~v~~~----~~~-~~v~~~~~~~~~~i~~-D~vl~a~G~~pn~~~l~ 285 (484)
T TIGR01438 229 HMEEHGVKFKRQFVPIKVEQI----EAK-VKVTFTDSTNGIEEEY-DTVLLAIGRDACTRKLN 285 (484)
T ss_pred HHHHcCCEEEeCceEEEEEEc----CCe-EEEEEecCCcceEEEe-CEEEEEecCCcCCCcCC
Confidence 344568999999999988643 122 2344433221235667 79999999876666643
No 180
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=41.54 E-value=92 Score=28.58 Aligned_cols=62 Identities=15% Similarity=0.158 Sum_probs=41.6
Q ss_pred hhhcCCCeEEEccceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEeceEEEecCCcccCCchhhhcccc
Q psy8943 22 PIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLLMVSGGS 90 (134)
Q Consensus 22 ~~~~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~g~~~~~~a~~~vIlaaGai~tP~lLl~SGig 90 (134)
..+...+++|++++.|++|.-+. .+....|.+. +|. .+.+ +.||+|.|..-+..|+..+|+.
T Consensus 195 ~~L~~~GV~v~~~~~v~~I~~~~---~~~~~~v~~~-dG~--~i~~-D~Vv~A~G~rPn~~L~~~~Gl~ 256 (847)
T PRK14989 195 RKIESMGVRVHTSKNTLEIVQEG---VEARKTMRFA-DGS--ELEV-DFIVFSTGIRPQDKLATQCGLA 256 (847)
T ss_pred HHHHHCCCEEEcCCeEEEEEecC---CCceEEEEEC-CCC--EEEc-CEEEECCCcccCchHHhhcCcc
Confidence 33445689999999999986431 1234455554 443 3566 7999999977776666557754
No 181
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=41.45 E-value=1.1e+02 Score=28.77 Aligned_cols=56 Identities=11% Similarity=0.235 Sum_probs=39.5
Q ss_pred cCCCeEEEccceEEEEEeccCCCCCeEEEEEEEe----------------CCeEEEEEeceEEEecCCcccCCchh
Q psy8943 25 LRKNLHIAMETQALRLLFDKSGPVPKAVGIEILR----------------DGRKHIIRAKKEIISSAGAINSPQLL 84 (134)
Q Consensus 25 ~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~----------------~g~~~~~~a~~~vIlaaGai~tP~lL 84 (134)
...++++...+.+.+|..+ +++++++|++.. .+....+.+ +.||+|.|..-.+.++
T Consensus 620 ~eeGI~~~~~~~p~~i~~~---~~G~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~~-D~Vi~AiG~~p~~~~~ 691 (1006)
T PRK12775 620 KEEGIDFFFLHSPVEIYVD---AEGSVRGMKVEEMELGEPDEKGRRKPMPTGEFKDLEC-DTVIYALGTKANPIIT 691 (1006)
T ss_pred HhCCCEEEecCCcEEEEeC---CCCeEEEEEEEEEEecccCCCCCccccCCCceEEEEc-CEEEECCCcCCChhhh
Confidence 4568999999999998654 346888887642 123356777 6999999976554443
No 182
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=40.56 E-value=84 Score=28.39 Aligned_cols=57 Identities=25% Similarity=0.299 Sum_probs=39.4
Q ss_pred hcCCCeEEEccceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEeceEEEecCCcccCCchhhhccc
Q psy8943 24 RLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLLMVSGG 89 (134)
Q Consensus 24 ~~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~g~~~~~~a~~~vIlaaGai~tP~lLl~SGi 89 (134)
+...+++|.+++.|++|.-+ +++.+|.+. +|. .+.+ +.||+|.|..-++.|+..+|+
T Consensus 192 l~~~GV~v~~~~~v~~i~~~-----~~~~~v~~~-dG~--~i~~-D~Vi~a~G~~Pn~~la~~~gl 248 (785)
T TIGR02374 192 LEQKGLTFLLEKDTVEIVGA-----TKADRIRFK-DGS--SLEA-DLIVMAAGIRPNDELAVSAGI 248 (785)
T ss_pred HHHcCCEEEeCCceEEEEcC-----CceEEEEEC-CCC--EEEc-CEEEECCCCCcCcHHHHhcCC
Confidence 44568999999999988532 356667665 443 4566 799999997655555545554
No 183
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=40.27 E-value=1e+02 Score=24.53 Aligned_cols=45 Identities=7% Similarity=0.162 Sum_probs=28.3
Q ss_pred cCCCeEEEccceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEeceEEEecCCcc
Q psy8943 25 LRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAI 78 (134)
Q Consensus 25 ~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~g~~~~~~a~~~vIlaaGai 78 (134)
..+++++..++.|+.+..+ ++.+ .|.+. ++. .+.+ +.||.|.|.-
T Consensus 124 ~~~g~~~~~~~~v~~i~~~----~~~~-~v~~~-~g~--~~~a-~~vI~AdG~~ 168 (395)
T PRK05732 124 KAPGVTLHCPARVANVERT----QGSV-RVTLD-DGE--TLTG-RLLVAADGSH 168 (395)
T ss_pred cCCCcEEEcCCEEEEEEEc----CCeE-EEEEC-CCC--EEEe-CEEEEecCCC
Confidence 4467999999999998654 1222 23332 342 4566 6888888853
No 184
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=40.13 E-value=1.2e+02 Score=24.03 Aligned_cols=43 Identities=19% Similarity=0.336 Sum_probs=28.6
Q ss_pred CCeEEEccceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEeceEEEecCCcc
Q psy8943 27 KNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAI 78 (134)
Q Consensus 27 ~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~g~~~~~~a~~~vIlaaGai 78 (134)
++++++.++.|+.|..+. +.+ .|.+. ++. .+.+ +.||.|.|.-
T Consensus 119 ~gv~~~~~~~v~~i~~~~----~~~-~v~~~-~g~--~~~a-d~vV~AdG~~ 161 (382)
T TIGR01984 119 TNIQLYCPARYKEIIRNQ----DYV-RVTLD-NGQ--QLRA-KLLIAADGAN 161 (382)
T ss_pred CCcEEEcCCeEEEEEEcC----CeE-EEEEC-CCC--EEEe-eEEEEecCCC
Confidence 589999999999987552 222 23332 443 4667 7888888853
No 185
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=39.72 E-value=1e+02 Score=27.50 Aligned_cols=55 Identities=13% Similarity=0.202 Sum_probs=38.1
Q ss_pred cCCCeEEEccceEEEEEeccCCCCCeEEEEEEEe--------C---------CeEEEEEeceEEEecCCcccCCch
Q psy8943 25 LRKNLHIAMETQALRLLFDKSGPVPKAVGIEILR--------D---------GRKHIIRAKKEIISSAGAINSPQL 83 (134)
Q Consensus 25 ~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~--------~---------g~~~~~~a~~~vIlaaGai~tP~l 83 (134)
...+++++..+.+.+|.-+ +++++++|++.. + +....+.+ +.||+|.|..-...+
T Consensus 619 ~~~GV~i~~~~~~~~i~~~---~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~-D~Vi~A~G~~p~~~l 690 (752)
T PRK12778 619 KEEGIEFLTLHNPIEYLAD---EKGWVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDV-DLVIVSVGVSPNPLV 690 (752)
T ss_pred HHcCCEEEecCcceEEEEC---CCCEEEEEEEEEEEecCcCCCCCCCceecCCCeEEEEC-CEEEECcCCCCCccc
Confidence 3568999999999998654 246888887641 1 23456777 799999996544443
No 186
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=39.46 E-value=1.1e+02 Score=26.32 Aligned_cols=59 Identities=15% Similarity=0.217 Sum_probs=38.4
Q ss_pred CCCeEEEccceEEEEEeccCCCCCeEEEEEEEe---------------CCeEEEEEeceEEEecCCcccCCchhhh-ccc
Q psy8943 26 RKNLHIAMETQALRLLFDKSGPVPKAVGIEILR---------------DGRKHIIRAKKEIISSAGAINSPQLLMV-SGG 89 (134)
Q Consensus 26 ~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~---------------~g~~~~~~a~~~vIlaaGai~tP~lLl~-SGi 89 (134)
..++++++++.+.+|.-+ +++.+ +|++.. .+....+.+ +.||+|.|..-.+.+|.. .|+
T Consensus 317 ~~GVki~~~~~~~~i~~~---~~~~~-~v~~~~~~~~~~~~~g~~~~~~g~~~~i~~-D~Vi~A~G~~p~~~~~~~~~gl 391 (564)
T PRK12771 317 REGVEINWLRTPVEIEGD---ENGAT-GLRVITVEKMELDEDGRPSPVTGEEETLEA-DLVVLAIGQDIDSAGLESVPGV 391 (564)
T ss_pred HcCCEEEecCCcEEEEcC---CCCEE-EEEEEEEEecccCCCCCeeecCCceEEEEC-CEEEECcCCCCchhhhhhccCc
Confidence 457999999999998654 22343 665421 233456777 699999997655555553 454
No 187
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=36.88 E-value=1.1e+02 Score=24.45 Aligned_cols=45 Identities=20% Similarity=0.289 Sum_probs=29.4
Q ss_pred cCCCeEEEccceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEeceEEEecCCcc
Q psy8943 25 LRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAI 78 (134)
Q Consensus 25 ~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~g~~~~~~a~~~vIlaaGai 78 (134)
...++++..++.|+.+..+. +.++ |.+. +|. .+.+ +.||.|.|.-
T Consensus 124 ~~~gv~i~~~~~v~~i~~~~----~~v~-v~~~-~g~--~~~a-~~vV~AdG~~ 168 (392)
T PRK08773 124 HAAGVQLHCPARVVALEQDA----DRVR-LRLD-DGR--RLEA-ALAIAADGAA 168 (392)
T ss_pred HhCCCEEEcCCeEEEEEecC----CeEE-EEEC-CCC--EEEe-CEEEEecCCC
Confidence 34689999999999987552 2222 3332 343 4566 7888888864
No 188
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=36.49 E-value=1.8e+02 Score=24.39 Aligned_cols=50 Identities=14% Similarity=0.230 Sum_probs=33.2
Q ss_pred eEEEccceEEEEEeccCCCCCeEEEEEEEe-CCeEEEEEeceEEEecCCcccCCchh
Q psy8943 29 LHIAMETQALRLLFDKSGPVPKAVGIEILR-DGRKHIIRAKKEIISSAGAINSPQLL 84 (134)
Q Consensus 29 l~i~t~~~V~ri~~~~~~~~~~a~gV~~~~-~g~~~~~~a~~~vIlaaGai~tP~lL 84 (134)
+++.+++.|+++..+. +. ..|.+.+ ++...++.+ +.||+|.|..-...+|
T Consensus 229 v~i~~~~~v~~i~~~~----~~-~~v~~~~~~~~~~~i~~-D~vi~a~G~~pn~~~l 279 (471)
T PRK06467 229 FNIMLETKVTAVEAKE----DG-IYVTMEGKKAPAEPQRY-DAVLVAVGRVPNGKLL 279 (471)
T ss_pred eEEEcCCEEEEEEEcC----CE-EEEEEEeCCCcceEEEe-CEEEEeecccccCCcc
Confidence 9999999999986541 22 2344443 233456777 7999999976555543
No 189
>COG4032 Predicted thiamine-pyrophosphate-binding protein [General function prediction only]
Probab=35.87 E-value=11 Score=27.34 Aligned_cols=25 Identities=36% Similarity=0.444 Sum_probs=16.8
Q ss_pred EEecCCcc---cCCchh-hhcccccccce
Q psy8943 71 IISSAGAI---NSPQLL-MVSGGSSVLNA 95 (134)
Q Consensus 71 vIlaaGai---~tP~lL-l~SGig~~~n~ 95 (134)
|=+|||+. +.|.+| ++||+|+..|.
T Consensus 55 ~GIcAGa~lAGkk~ailmQnsGlGNsiNa 83 (172)
T COG4032 55 VGICAGAYLAGKKPAILMQNSGLGNSINA 83 (172)
T ss_pred eeeehhhhhcCCCcEEEEeccCcchHHHH
Confidence 44666643 456665 55899999875
No 190
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=35.72 E-value=1.1e+02 Score=25.72 Aligned_cols=53 Identities=23% Similarity=0.291 Sum_probs=37.7
Q ss_pred hcCCCeEEEccceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEeceEEEecCCcccCCchhhhcc
Q psy8943 24 RLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLLMVSG 88 (134)
Q Consensus 24 ~~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~g~~~~~~a~~~vIlaaGai~tP~lLl~SG 88 (134)
....+++|++++.|++|.-+ +|.+.+.+. .+.+ ..+|-++|.-.+|-+-.++|
T Consensus 219 L~~~GV~v~l~~~Vt~v~~~---------~v~~~~g~~--~I~~-~tvvWaaGv~a~~~~~~l~~ 271 (405)
T COG1252 219 LEKLGVEVLLGTPVTEVTPD---------GVTLKDGEE--EIPA-DTVVWAAGVRASPLLKDLSG 271 (405)
T ss_pred HHHCCCEEEcCCceEEECCC---------cEEEccCCe--eEec-CEEEEcCCCcCChhhhhcCh
Confidence 35678999999999998544 455554333 5677 79999999777765554444
No 191
>PRK08163 salicylate hydroxylase; Provisional
Probab=34.63 E-value=1.3e+02 Score=24.07 Aligned_cols=45 Identities=11% Similarity=0.068 Sum_probs=28.6
Q ss_pred cCCCeEEEccceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEeceEEEecCCcc
Q psy8943 25 LRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAI 78 (134)
Q Consensus 25 ~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~g~~~~~~a~~~vIlaaGai 78 (134)
..+++++..++.|+.+..+. +.++ |.+. +|. ++.+ +.||.|.|.-
T Consensus 121 ~~~~v~~~~~~~v~~i~~~~----~~v~-v~~~-~g~--~~~a-d~vV~AdG~~ 165 (396)
T PRK08163 121 DHPLVEFRTSTHVVGIEQDG----DGVT-VFDQ-QGN--RWTG-DALIGCDGVK 165 (396)
T ss_pred hcCCcEEEeCCEEEEEecCC----CceE-EEEc-CCC--EEec-CEEEECCCcC
Confidence 34569999999999997542 2221 3322 443 4666 6888888764
No 192
>PRK14727 putative mercuric reductase; Provisional
Probab=34.36 E-value=1.6e+02 Score=24.62 Aligned_cols=52 Identities=19% Similarity=0.220 Sum_probs=34.5
Q ss_pred hhcCCCeEEEccceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEeceEEEecCCcccCCchh
Q psy8943 23 IRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLL 84 (134)
Q Consensus 23 ~~~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~g~~~~~~a~~~vIlaaGai~tP~lL 84 (134)
.+...+++|++++.|+++..+. + ++.+..++. .+.+ +.||+|.|..-+..+|
T Consensus 237 ~L~~~GV~i~~~~~V~~i~~~~----~---~~~v~~~~g--~i~a-D~VlvA~G~~pn~~~l 288 (479)
T PRK14727 237 CFEKEGIEVLNNTQASLVEHDD----N---GFVLTTGHG--ELRA-EKLLISTGRHANTHDL 288 (479)
T ss_pred HHHhCCCEEEcCcEEEEEEEeC----C---EEEEEEcCC--eEEe-CEEEEccCCCCCccCC
Confidence 3445689999999999986541 2 222333222 3566 7999999988766654
No 193
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=34.33 E-value=1.3e+02 Score=24.41 Aligned_cols=57 Identities=14% Similarity=0.208 Sum_probs=36.8
Q ss_pred hcCCCeEEEccceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEeceEEEecCCcccCCchhhhcccc
Q psy8943 24 RLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLLMVSGGS 90 (134)
Q Consensus 24 ~~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~g~~~~~~a~~~vIlaaGai~tP~lLl~SGig 90 (134)
....++++++++.|+++.-+ +.+ .|.. .+|. .+.+ +.||++.|..-...++..+|+.
T Consensus 196 l~~~GV~i~~~~~V~~i~~~-----~~~-~v~l-~~g~--~i~a-D~Vv~a~G~~pn~~l~~~~gl~ 252 (396)
T PRK09754 196 HQQAGVRILLNNAIEHVVDG-----EKV-ELTL-QSGE--TLQA-DVVIYGIGISANDQLAREANLD 252 (396)
T ss_pred HHHCCCEEEeCCeeEEEEcC-----CEE-EEEE-CCCC--EEEC-CEEEECCCCChhhHHHHhcCCC
Confidence 34568999999999998531 222 2333 2443 3566 7899999987666666556653
No 194
>PRK13984 putative oxidoreductase; Provisional
Probab=34.28 E-value=1.4e+02 Score=25.75 Aligned_cols=55 Identities=13% Similarity=0.238 Sum_probs=37.4
Q ss_pred CCCeEEEccceEEEEEeccCCCCCeEEEEEEEe-------C---------CeEEEEEeceEEEecCCcccCCchhh
Q psy8943 26 RKNLHIAMETQALRLLFDKSGPVPKAVGIEILR-------D---------GRKHIIRAKKEIISSAGAINSPQLLM 85 (134)
Q Consensus 26 ~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~-------~---------g~~~~~~a~~~vIlaaGai~tP~lLl 85 (134)
..++++++++.+.++..+ ++++++|++.. + +....+.+ +.||+|.|..-...+|.
T Consensus 474 ~~GV~i~~~~~~~~i~~~----~g~v~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i~a-D~Vi~aiG~~p~~~~l~ 544 (604)
T PRK13984 474 EEGVVIYPGWGPMEVVIE----NDKVKGVKFKKCVEVFDEEGRFNPKFDESDQIIVEA-DMVVEAIGQAPDYSYLP 544 (604)
T ss_pred HcCCEEEeCCCCEEEEcc----CCEEEEEEEEEEeeccCCCCCccceecCCceEEEEC-CEEEEeeCCCCChhhhh
Confidence 457999999988887543 35788876642 1 23456777 79999999765444443
No 195
>PF07897 DUF1675: Protein of unknown function (DUF1675); InterPro: IPR012463 The members of this family are sequences derived from hypothetical plant proteins of unknown function. One member of this family (Q9SFV5 from SWISSPROT) is annotated as a putative RNA-binding protein, but no evidence was found to support this.
Probab=33.72 E-value=81 Score=25.26 Aligned_cols=44 Identities=20% Similarity=0.314 Sum_probs=30.7
Q ss_pred eEEEEEEEe-CCeEEEEEeceEEEecCCcccCCchhhh-cccccccceeEE
Q psy8943 50 KAVGIEILR-DGRKHIIRAKKEIISSAGAINSPQLLMV-SGGSSVLNAMIY 98 (134)
Q Consensus 50 ~a~gV~~~~-~g~~~~~~a~~~vIlaaGai~tP~lLl~-SGig~~~n~~~~ 98 (134)
+|.|+.|.- .+... +.|.+|-|...||.=... .|++...|=|.|
T Consensus 237 ~i~g~ly~y~~~~~v-----~i~c~chg~~~~~~efv~h~~~~~~~~p~~h 282 (284)
T PF07897_consen 237 RIEGFLYKYGKGEEV-----RIVCVCHGSFLSPAEFVKHAGGGDVANPLRH 282 (284)
T ss_pred eeeEEEEEecCCCeE-----EEEEEecCCCCCHHHHHHhcCCCCcCCchhc
Confidence 788888775 33222 567789999999976555 677777776654
No 196
>PRK07538 hypothetical protein; Provisional
Probab=33.39 E-value=1.4e+02 Score=24.13 Aligned_cols=49 Identities=16% Similarity=0.110 Sum_probs=27.9
Q ss_pred CCeEEEccceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEeceEEEecCCcccC
Q psy8943 27 KNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINS 80 (134)
Q Consensus 27 ~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~g~~~~~~a~~~vIlaaGai~t 80 (134)
+..+|..+++|+.+..+. ++.+..+.....+...++.+ +.||-|-| ++|
T Consensus 117 g~~~i~~~~~v~~~~~~~---~~~~~~~~~~~~g~~~~~~a-dlvIgADG-~~S 165 (413)
T PRK07538 117 GPDAVRTGHRVVGFEQDA---DVTVVFLGDRAGGDLVSVRG-DVLIGADG-IHS 165 (413)
T ss_pred CCcEEEcCCEEEEEEecC---CceEEEEeccCCCccceEEe-eEEEECCC-CCH
Confidence 346799999999987552 23332332222344556777 55555555 444
No 197
>PRK07190 hypothetical protein; Provisional
Probab=33.24 E-value=1.4e+02 Score=25.20 Aligned_cols=45 Identities=11% Similarity=0.287 Sum_probs=30.2
Q ss_pred cCCCeEEEccceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEeceEEEecCCcc
Q psy8943 25 LRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAI 78 (134)
Q Consensus 25 ~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~g~~~~~~a~~~vIlaaGai 78 (134)
...+++|..++.|+.|..+. ++ ++ +.+ .++. ++++ +.||.|.|+-
T Consensus 120 ~~~Gv~v~~~~~v~~l~~~~---~~-v~-v~~-~~g~--~v~a-~~vVgADG~~ 164 (487)
T PRK07190 120 KEAGAAVKRNTSVVNIELNQ---AG-CL-TTL-SNGE--RIQS-RYVIGADGSR 164 (487)
T ss_pred HHCCCEEEeCCEEEEEEEcC---Ce-eE-EEE-CCCc--EEEe-CEEEECCCCC
Confidence 34579999999999997762 22 21 122 2443 6777 7899999874
No 198
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=32.99 E-value=1.4e+02 Score=25.25 Aligned_cols=29 Identities=17% Similarity=0.170 Sum_probs=21.6
Q ss_pred CCCeEEEccceEEEEEeccCCCCCeEEEEEEE
Q psy8943 26 RKNLHIAMETQALRLLFDKSGPVPKAVGIEIL 57 (134)
Q Consensus 26 ~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~ 57 (134)
..+.++++++.|++|..+. ++++.+|...
T Consensus 244 ~~Gg~~~L~~~V~~I~~~~---~g~~~~V~~~ 272 (443)
T PTZ00363 244 IYGGTYMLNTPVDEVVFDE---NGKVCGVKSE 272 (443)
T ss_pred HcCcEEEcCCeEEEEEEcC---CCeEEEEEEC
Confidence 4567999999999998872 3566666543
No 199
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=32.99 E-value=83 Score=26.43 Aligned_cols=53 Identities=19% Similarity=0.322 Sum_probs=34.1
Q ss_pred hhhhhhhhcCCCeEEEccceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEeceEEEecCCc
Q psy8943 17 KAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGA 77 (134)
Q Consensus 17 ~~~l~~~~~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~g~~~~~~a~~~vIlaaGa 77 (134)
..+|...+...+++++.+ +|..+.++. ++.+++|...+ |. ++.+ +-||=|+|.
T Consensus 157 d~~L~~~A~~~Gv~~~~g-~V~~v~~~~---~g~i~~v~~~~-g~--~i~a-d~~IDASG~ 209 (454)
T PF04820_consen 157 DQFLRRHAEERGVEVIEG-TVVDVELDE---DGRITAVRLDD-GR--TIEA-DFFIDASGR 209 (454)
T ss_dssp HHHHHHHHHHTT-EEEET--EEEEEE-T---TSEEEEEEETT-SE--EEEE-SEEEE-SGG
T ss_pred HHHHHHHHhcCCCEEEeC-EEEEEEEcC---CCCEEEEEECC-CC--EEEE-eEEEECCCc
Confidence 356655444558999887 577777773 56788887764 43 5777 788888884
No 200
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=31.03 E-value=66 Score=25.59 Aligned_cols=51 Identities=12% Similarity=0.173 Sum_probs=31.4
Q ss_pred CCCeEEEccceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEeceEEEecCCcccCCchh
Q psy8943 26 RKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLL 84 (134)
Q Consensus 26 ~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~g~~~~~~a~~~vIlaaGai~tP~lL 84 (134)
+.+.+|.+++.|++|..+. +.++ +.+..++. .+.+ +.||++..+-...+||
T Consensus 209 ~~g~~i~~~~~V~~i~~~~----~~~~-~~~~~~g~--~~~~-d~vi~a~p~~~~~~ll 259 (419)
T TIGR03467 209 SRGGEVRLGTRVRSIEANA----GGIR-ALVLSGGE--TLPA-DAVVLAVPPRHAASLL 259 (419)
T ss_pred HcCCEEEcCCeeeEEEEcC----Ccce-EEEecCCc--cccC-CEEEEcCCHHHHHHhC
Confidence 3468999999999998762 2332 22223443 3566 6888877654444443
No 201
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=30.93 E-value=2.8e+02 Score=22.15 Aligned_cols=63 Identities=14% Similarity=0.234 Sum_probs=43.3
Q ss_pred hhhhhcCCCeEEEccceEEEEEeccCCCCCeEEEEEEEeC-CeEEEEEeceEEEecCCcccCCchhhhccc
Q psy8943 20 LRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRD-GRKHIIRAKKEIISSAGAINSPQLLMVSGG 89 (134)
Q Consensus 20 l~~~~~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~-g~~~~~~a~~~vIlaaGai~tP~lLl~SGi 89 (134)
...+...+++.++.++.+.+|.-+ + +.+|.+.+. +....+.. .-+.++-|..-.-.++...++
T Consensus 185 ~~~l~~~~~i~~~~~~~i~ei~G~-----~-v~~v~l~~~~~~~~~~~~-~gvf~~iG~~p~~~~~~~~~~ 248 (305)
T COG0492 185 VERLKKNVKIEVLTNTVVKEILGD-----D-VEGVVLKNVKGEEKELPV-DGVFIAIGHLPNTELLKGLGV 248 (305)
T ss_pred HHHHHhcCCeEEEeCCceeEEecC-----c-cceEEEEecCCceEEEEe-ceEEEecCCCCchHHHhhccc
Confidence 334455669999999999998654 2 788888874 66666666 577777776544456655554
No 202
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=30.67 E-value=1.4e+02 Score=26.20 Aligned_cols=47 Identities=15% Similarity=0.208 Sum_probs=29.5
Q ss_pred CeEEEccceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEeceEEEecCCcccCCchh
Q psy8943 28 NLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLL 84 (134)
Q Consensus 28 nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~g~~~~~~a~~~vIlaaGai~tP~lL 84 (134)
++++..++.|+.|..+ ++.++ |.. .++. .+.+ +.||+|+|+- ++.++
T Consensus 421 Gv~i~~~~~V~~i~~~----~~~~~-v~t-~~g~--~~~a-d~VV~A~G~~-s~~l~ 467 (662)
T PRK01747 421 QLTIHFGHEVARLERE----DDGWQ-LDF-AGGT--LASA-PVVVLANGHD-AARFA 467 (662)
T ss_pred CcEEEeCCEeeEEEEe----CCEEE-EEE-CCCc--EEEC-CEEEECCCCC-ccccc
Confidence 7999999999998765 23332 321 1332 3456 7899999964 34443
No 203
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=30.47 E-value=1.6e+02 Score=23.94 Aligned_cols=57 Identities=12% Similarity=0.163 Sum_probs=37.0
Q ss_pred hhcCCCeEEEccceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEeceEEEecCCcccCCchhhhcccc
Q psy8943 23 IRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLLMVSGGS 90 (134)
Q Consensus 23 ~~~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~g~~~~~~a~~~vIlaaGai~tP~lLl~SGig 90 (134)
.+...++++++++.|++|.-+ +.+ +.+ .++. .+.+ +.+|+|.|..-...+|..+|+.
T Consensus 188 ~l~~~gV~v~~~~~v~~i~~~-----~~~--v~~-~~g~--~i~~-D~vi~a~G~~p~~~~l~~~gl~ 244 (427)
T TIGR03385 188 ELKKHEINLRLNEEVDSIEGE-----ERV--KVF-TSGG--VYQA-DMVILATGIKPNSELAKDSGLK 244 (427)
T ss_pred HHHHcCCEEEeCCEEEEEecC-----CCE--EEE-cCCC--EEEe-CEEEECCCccCCHHHHHhcCcc
Confidence 344568999999999998533 222 232 2443 3566 6889999977665666655543
No 204
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=30.21 E-value=2e+02 Score=23.57 Aligned_cols=52 Identities=10% Similarity=0.215 Sum_probs=33.5
Q ss_pred hhcCCCeEEEccceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEeceEEEecCCcccCCchh
Q psy8943 23 IRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLL 84 (134)
Q Consensus 23 ~~~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~g~~~~~~a~~~vIlaaGai~tP~lL 84 (134)
.+...++++++++.|++|.-+ ++. +.+..++. .+.+ +.+++|.|..-...+|
T Consensus 208 ~l~~~gV~v~~~~~v~~i~~~----~~~---v~v~~~~g--~i~~-D~vl~a~G~~pn~~~l 259 (441)
T PRK08010 208 ILRDQGVDIILNAHVERISHH----ENQ---VQVHSEHA--QLAV-DALLIASGRQPATASL 259 (441)
T ss_pred HHHhCCCEEEeCCEEEEEEEc----CCE---EEEEEcCC--eEEe-CEEEEeecCCcCCCCc
Confidence 345678999999999998654 122 23332222 3556 7899999976655543
No 205
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=30.18 E-value=2e+02 Score=23.44 Aligned_cols=54 Identities=15% Similarity=0.251 Sum_probs=31.8
Q ss_pred hhhhhcCCCeEEEccceEEEEEeccCCCCCeEEEEEEEe-C-----CeEEEEEeceEEEecCCc
Q psy8943 20 LRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILR-D-----GRKHIIRAKKEIISSAGA 77 (134)
Q Consensus 20 l~~~~~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~-~-----g~~~~~~a~~~vIlaaGa 77 (134)
|...+...+++++..+ +..+..... .+...+|.+.. + |....+++ +.||.|.|+
T Consensus 99 L~~~a~~~G~~v~~~~-~~~i~~~~~--~~~~~~v~~~~~~~~~~~g~~~~i~a-~~VIgADG~ 158 (398)
T TIGR02028 99 LRRRAADAGATLINGL-VTKLSLPAD--ADDPYTLHYISSDSGGPSGTRCTLEV-DAVIGADGA 158 (398)
T ss_pred HHHHHHHCCcEEEcce-EEEEEeccC--CCceEEEEEeeccccccCCCccEEEe-CEEEECCCc
Confidence 3333345688997774 666643211 12344566543 2 45567888 788888885
No 206
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=30.13 E-value=2.2e+02 Score=22.82 Aligned_cols=46 Identities=20% Similarity=0.215 Sum_probs=28.9
Q ss_pred cCCCeEEEccceEEEEEeccCCCCCeEEEEEEEe-----CCeEEEEEeceEEEecCCc
Q psy8943 25 LRKNLHIAMETQALRLLFDKSGPVPKAVGIEILR-----DGRKHIIRAKKEIISSAGA 77 (134)
Q Consensus 25 ~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~-----~g~~~~~~a~~~vIlaaGa 77 (134)
...+++++.. .|+.|..+ ++.+ .|.+.+ ++....+.+ +.||.|.|+
T Consensus 103 ~~~G~~v~~~-~v~~v~~~----~~~~-~v~~~~~~~~~~~~~~~i~a-~~VI~AdG~ 153 (388)
T TIGR02023 103 QKAGAELIHG-LFLKLERD----RDGV-TLTYRTPKKGAGGEKGSVEA-DVVIGADGA 153 (388)
T ss_pred HhCCCEEEee-EEEEEEEc----CCeE-EEEEEeccccCCCcceEEEe-CEEEECCCC
Confidence 3457888754 68887655 2222 455553 334456788 788888885
No 207
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=30.02 E-value=1.4e+02 Score=25.68 Aligned_cols=44 Identities=16% Similarity=0.311 Sum_probs=31.3
Q ss_pred CCCeEEEccceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEeceEEEecCCc
Q psy8943 26 RKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGA 77 (134)
Q Consensus 26 ~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~g~~~~~~a~~~vIlaaGa 77 (134)
.-+.+++.++.|+.|+++. +.+.+|... +|. .+.+ ++||+|-|-
T Consensus 185 ~~G~ei~f~t~VeDi~~~~----~~~~~v~~~-~g~--~i~~-~~vvlA~Gr 228 (486)
T COG2509 185 SLGGEIRFNTEVEDIEIED----NEVLGVKLT-KGE--EIEA-DYVVLAPGR 228 (486)
T ss_pred hcCcEEEeeeEEEEEEecC----CceEEEEcc-CCc--EEec-CEEEEccCc
Confidence 3459999999999999983 345455433 332 4666 799999885
No 208
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=29.06 E-value=2.2e+02 Score=22.60 Aligned_cols=44 Identities=25% Similarity=0.308 Sum_probs=28.3
Q ss_pred cCCCeEEEccceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEeceEEEecCCc
Q psy8943 25 LRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGA 77 (134)
Q Consensus 25 ~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~g~~~~~~a~~~vIlaaGa 77 (134)
..++++++.++.|+.+..+. +. ..|.+. ++. .+.+ +.||.|.|.
T Consensus 124 ~~~gv~i~~~~~v~~i~~~~----~~-~~v~~~-~g~--~~~a-~~vI~AdG~ 167 (391)
T PRK08020 124 AHPNVTLRCPASLQALQRDD----DG-WELTLA-DGE--EIQA-KLVIGADGA 167 (391)
T ss_pred cCCCcEEEcCCeeEEEEEcC----Ce-EEEEEC-CCC--EEEe-CEEEEeCCC
Confidence 34589999999999986552 22 223332 443 4667 678888775
No 209
>PRK06475 salicylate hydroxylase; Provisional
Probab=29.00 E-value=1.8e+02 Score=23.48 Aligned_cols=18 Identities=6% Similarity=0.051 Sum_probs=15.0
Q ss_pred CCCeEEEccceEEEEEec
Q psy8943 26 RKNLHIAMETQALRLLFD 43 (134)
Q Consensus 26 ~~nl~i~t~~~V~ri~~~ 43 (134)
.+++++..+++|+++..+
T Consensus 120 ~~~i~v~~~~~v~~~~~~ 137 (400)
T PRK06475 120 NPGIEIKLGAEMTSQRQT 137 (400)
T ss_pred cCCcEEEECCEEEEEecC
Confidence 467999999999998654
No 210
>PRK06847 hypothetical protein; Provisional
Probab=28.96 E-value=2e+02 Score=22.70 Aligned_cols=49 Identities=14% Similarity=0.176 Sum_probs=31.3
Q ss_pred cCCCeEEEccceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEeceEEEecCCcccCCc
Q psy8943 25 LRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQ 82 (134)
Q Consensus 25 ~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~g~~~~~~a~~~vIlaaGai~tP~ 82 (134)
...+++|..++.|++|..+. +. ..|.+. +|. .+.+ +.||.|.|.-...+
T Consensus 118 ~~~gv~v~~~~~v~~i~~~~----~~-~~v~~~-~g~--~~~a-d~vI~AdG~~s~~r 166 (375)
T PRK06847 118 RAAGADVRLGTTVTAIEQDD----DG-VTVTFS-DGT--TGRY-DLVVGADGLYSKVR 166 (375)
T ss_pred HHhCCEEEeCCEEEEEEEcC----CE-EEEEEc-CCC--EEEc-CEEEECcCCCcchh
Confidence 34578999999999987552 22 233332 443 3566 68888888654443
No 211
>PLN02576 protoporphyrinogen oxidase
Probab=28.75 E-value=1.1e+02 Score=25.43 Aligned_cols=50 Identities=14% Similarity=0.164 Sum_probs=31.6
Q ss_pred eEEEccceEEEEEeccCCCCCeEEEEEEEe-CCeEEEEEeceEEEecCCcccCCchh
Q psy8943 29 LHIAMETQALRLLFDKSGPVPKAVGIEILR-DGRKHIIRAKKEIISSAGAINSPQLL 84 (134)
Q Consensus 29 l~i~t~~~V~ri~~~~~~~~~~a~gV~~~~-~g~~~~~~a~~~vIlaaGai~tP~lL 84 (134)
-+|.+++.|++|..+. ++. ..|.+.. +|. ..+.+ +.||++.-.-..+.+|
T Consensus 252 ~~i~l~~~V~~I~~~~---~~~-~~v~~~~~~g~-~~~~a-d~VI~a~P~~~l~~ll 302 (496)
T PLN02576 252 DKVKLNWKVLSLSKND---DGG-YSLTYDTPEGK-VNVTA-KAVVMTAPLYVVSEML 302 (496)
T ss_pred CcEEcCCEEEEEEECC---CCc-EEEEEecCCCc-eeEEe-CEEEECCCHHHHHHHh
Confidence 3699999999998762 222 2344443 332 34677 6899987655555554
No 212
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=28.75 E-value=1.9e+02 Score=22.87 Aligned_cols=46 Identities=28% Similarity=0.456 Sum_probs=28.4
Q ss_pred hhcCCCeEEEccceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEeceEEEecCCcc
Q psy8943 23 IRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAI 78 (134)
Q Consensus 23 ~~~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~g~~~~~~a~~~vIlaaGai 78 (134)
+...+|+++. +..|+.|..+. +.+ .|.+. ++. ++.+ +.+|.|.|+-
T Consensus 121 ~~~~~~v~~~-~~~v~~i~~~~----~~~-~v~~~-~g~--~~~a-~~vI~adG~~ 166 (388)
T PRK07608 121 LRFQPNLTWF-PARAQGLEVDP----DAA-TLTLA-DGQ--VLRA-DLVVGADGAH 166 (388)
T ss_pred HHhCCCcEEE-cceeEEEEecC----CeE-EEEEC-CCC--EEEe-eEEEEeCCCC
Confidence 3344568999 88999886542 222 23332 342 4677 7888888864
No 213
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=28.58 E-value=2e+02 Score=24.43 Aligned_cols=54 Identities=20% Similarity=0.263 Sum_probs=33.7
Q ss_pred hhhhhcCCCeEEEccceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEeceEEEecCCcccCCchh
Q psy8943 20 LRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLL 84 (134)
Q Consensus 20 l~~~~~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~g~~~~~~a~~~vIlaaGai~tP~lL 84 (134)
+...+.+-+++++.++.|+.|..+. + ...|.. .++. .+.+ +.+|+|.|+ .|+.+
T Consensus 272 l~~~~~~~gv~i~~~~~V~~I~~~~----~-~~~V~~-~~g~--~i~a-~~vViAtG~--~~r~~ 325 (517)
T PRK15317 272 LEEHVKEYDVDIMNLQRASKLEPAA----G-LIEVEL-ANGA--VLKA-KTVILATGA--RWRNM 325 (517)
T ss_pred HHHHHHHCCCEEEcCCEEEEEEecC----C-eEEEEE-CCCC--EEEc-CEEEECCCC--CcCCC
Confidence 3333445579999999999987652 1 112332 2343 4666 799999998 34444
No 214
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=28.16 E-value=2.6e+02 Score=23.99 Aligned_cols=56 Identities=11% Similarity=0.084 Sum_probs=36.1
Q ss_pred cCCCeEEEccceEEEEEeccCCCCCeEEEEEEEe--CCeEEEEE--ece---EEEecCCcccCCchhh
Q psy8943 25 LRKNLHIAMETQALRLLFDKSGPVPKAVGIEILR--DGRKHIIR--AKK---EIISSAGAINSPQLLM 85 (134)
Q Consensus 25 ~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~--~g~~~~~~--a~~---~vIlaaGai~tP~lLl 85 (134)
...+++|+.++.|++|.-+ +.+..+.+.+ +|....+. ++. .|+++.|..-...++.
T Consensus 190 ~~~gV~i~~~~~V~~i~~~-----~~v~~v~~~~~~~G~~~~~~~~~D~~~~~Vi~a~G~~Pn~~l~~ 252 (555)
T TIGR03143 190 NHPKIEVKFNTELKEATGD-----DGLRYAKFVNNVTGEITEYKAPKDAGTFGVFVFVGYAPSSELFK 252 (555)
T ss_pred hCCCcEEEeCCEEEEEEcC-----CcEEEEEEEECCCCCEEEEeccccccceEEEEEeCCCCChhHHh
Confidence 3468999999999998622 3456666554 45544443 321 3899999876655543
No 215
>PRK06834 hypothetical protein; Provisional
Probab=28.10 E-value=1.9e+02 Score=24.40 Aligned_cols=46 Identities=20% Similarity=0.301 Sum_probs=30.3
Q ss_pred cCCCeEEEccceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEeceEEEecCCccc
Q psy8943 25 LRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAIN 79 (134)
Q Consensus 25 ~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~g~~~~~~a~~~vIlaaGai~ 79 (134)
...+++|..++.|+.|..+. +.+ .|.+ .++. ++.+ +.||.|.|+-.
T Consensus 111 ~~~gv~i~~~~~v~~v~~~~----~~v-~v~~-~~g~--~i~a-~~vVgADG~~S 156 (488)
T PRK06834 111 GELGVPIYRGREVTGFAQDD----TGV-DVEL-SDGR--TLRA-QYLVGCDGGRS 156 (488)
T ss_pred HhCCCEEEcCCEEEEEEEcC----CeE-EEEE-CCCC--EEEe-CEEEEecCCCC
Confidence 34579999999999997652 222 2333 2443 5677 78888888743
No 216
>PRK06116 glutathione reductase; Validated
Probab=27.40 E-value=2.4e+02 Score=23.16 Aligned_cols=51 Identities=10% Similarity=0.114 Sum_probs=32.9
Q ss_pred hcCCCeEEEccceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEeceEEEecCCcccCCc
Q psy8943 24 RLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQ 82 (134)
Q Consensus 24 ~~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~g~~~~~~a~~~vIlaaGai~tP~ 82 (134)
+...++++++++.|.+|.-+. ++.+ .|.+. +|. .+.+ +.||+|.|..-...
T Consensus 218 L~~~GV~i~~~~~V~~i~~~~---~g~~-~v~~~-~g~--~i~~-D~Vv~a~G~~p~~~ 268 (450)
T PRK06116 218 MEKKGIRLHTNAVPKAVEKNA---DGSL-TLTLE-DGE--TLTV-DCLIWAIGREPNTD 268 (450)
T ss_pred HHHCCcEEECCCEEEEEEEcC---CceE-EEEEc-CCc--EEEe-CEEEEeeCCCcCCC
Confidence 445689999999999996541 2222 24332 443 4566 68999999654444
No 217
>PRK09126 hypothetical protein; Provisional
Probab=27.01 E-value=2.9e+02 Score=21.91 Aligned_cols=44 Identities=14% Similarity=0.280 Sum_probs=28.8
Q ss_pred cCCCeEEEccceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEeceEEEecCCc
Q psy8943 25 LRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGA 77 (134)
Q Consensus 25 ~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~g~~~~~~a~~~vIlaaGa 77 (134)
...+++|..+++|+.+..+. +.+ .|.+. +|. .+.+ +.||.|.|.
T Consensus 122 ~~~g~~i~~~~~v~~~~~~~----~~~-~v~~~-~g~--~~~a-~~vI~AdG~ 165 (392)
T PRK09126 122 QQDGIELLTGTRVTAVRTDD----DGA-QVTLA-NGR--RLTA-RLLVAADSR 165 (392)
T ss_pred hCCCcEEEcCCeEEEEEEcC----CeE-EEEEc-CCC--EEEe-CEEEEeCCC
Confidence 34689999999999986542 222 34443 443 4667 677777775
No 218
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=26.38 E-value=2.3e+02 Score=23.31 Aligned_cols=52 Identities=12% Similarity=0.164 Sum_probs=34.0
Q ss_pred hcCCCeEEEccceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEeceEEEecCCcccCCchh
Q psy8943 24 RLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLL 84 (134)
Q Consensus 24 ~~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~g~~~~~~a~~~vIlaaGai~tP~lL 84 (134)
+...++++++++.|+++.-+. +.+ .+.+ .++. .+.+ +.||+|.|..-...+|
T Consensus 226 l~~~gI~v~~~~~v~~i~~~~----~~~-~v~~-~~g~--~i~~-D~vi~a~G~~p~~~~l 277 (461)
T PRK05249 226 LRDSGVTIRHNEEVEKVEGGD----DGV-IVHL-KSGK--KIKA-DCLLYANGRTGNTDGL 277 (461)
T ss_pred HHHcCCEEEECCEEEEEEEeC----CeE-EEEE-CCCC--EEEe-CEEEEeecCCccccCC
Confidence 345689999999999986441 222 2232 2443 4666 7999999977666654
No 219
>PTZ00367 squalene epoxidase; Provisional
Probab=25.76 E-value=2.5e+02 Score=24.45 Aligned_cols=33 Identities=21% Similarity=0.256 Sum_probs=21.3
Q ss_pred CCCeEEEccceEEEEEeccCCCCCeEEEEEEEeC
Q psy8943 26 RKNLHIAMETQALRLLFDKSGPVPKAVGIEILRD 59 (134)
Q Consensus 26 ~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~ 59 (134)
.+|++++. .+|+.++.+...-..++.||++...
T Consensus 146 ~~~V~v~~-~~v~~l~~~~~~~~~~v~gV~~~~~ 178 (567)
T PTZ00367 146 QDNVTMLE-GTVNSLLEEGPGFSERAYGVEYTEA 178 (567)
T ss_pred CCCcEEEE-eEEEEeccccCccCCeeEEEEEecC
Confidence 47899964 5788886653211236888887653
No 220
>PRK09897 hypothetical protein; Provisional
Probab=25.72 E-value=2.2e+02 Score=24.68 Aligned_cols=42 Identities=10% Similarity=0.113 Sum_probs=26.8
Q ss_pred eEEEccceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEeceEEEecCCcc
Q psy8943 29 LHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAI 78 (134)
Q Consensus 29 l~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~g~~~~~~a~~~vIlaaGai 78 (134)
+++..++.|+.|..+. + ++.+...+....+.+ +.||||+|..
T Consensus 124 V~v~~~~~V~~I~~~~----~---g~~V~t~~gg~~i~a-D~VVLAtGh~ 165 (534)
T PRK09897 124 VAVYESCQVTDLQITN----A---GVMLATNQDLPSETF-DLAVIATGHV 165 (534)
T ss_pred EEEEECCEEEEEEEeC----C---EEEEEECCCCeEEEc-CEEEECCCCC
Confidence 7788888999986652 2 233433211124566 7999999974
No 221
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=25.44 E-value=2.9e+02 Score=22.60 Aligned_cols=50 Identities=6% Similarity=0.147 Sum_probs=32.5
Q ss_pred hcCCCeEEEccceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEeceEEEecCCcccCCch
Q psy8943 24 RLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQL 83 (134)
Q Consensus 24 ~~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~g~~~~~~a~~~vIlaaGai~tP~l 83 (134)
+...++++.+++.|++|.-+ ++. +.+..++. .+.+ +.+|+|.|..-....
T Consensus 208 l~~~GI~i~~~~~V~~i~~~----~~~---v~v~~~g~--~i~~-D~viva~G~~p~~~~ 257 (438)
T PRK07251 208 MEEDGITFLLNAHTTEVKND----GDQ---VLVVTEDE--TYRF-DALLYATGRKPNTEP 257 (438)
T ss_pred HHHcCCEEEcCCEEEEEEec----CCE---EEEEECCe--EEEc-CEEEEeeCCCCCccc
Confidence 34568999999999998643 122 22333443 4566 789999997644443
No 222
>PRK14694 putative mercuric reductase; Provisional
Probab=25.31 E-value=2.9e+02 Score=22.93 Aligned_cols=51 Identities=16% Similarity=0.268 Sum_probs=33.6
Q ss_pred hcCCCeEEEccceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEeceEEEecCCcccCCchh
Q psy8943 24 RLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLL 84 (134)
Q Consensus 24 ~~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~g~~~~~~a~~~vIlaaGai~tP~lL 84 (134)
....++++++++.|++|..+ ++. +.+..++. .+.+ +.||+|.|..-...+|
T Consensus 228 l~~~GI~v~~~~~v~~i~~~----~~~---~~v~~~~~--~i~~-D~vi~a~G~~pn~~~l 278 (468)
T PRK14694 228 FRREGIEVLKQTQASEVDYN----GRE---FILETNAG--TLRA-EQLLVATGRTPNTENL 278 (468)
T ss_pred HHhCCCEEEeCCEEEEEEEc----CCE---EEEEECCC--EEEe-CEEEEccCCCCCcCCC
Confidence 44568999999999998644 122 22222332 3666 6899999977666654
No 223
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=25.23 E-value=2.6e+02 Score=22.20 Aligned_cols=45 Identities=13% Similarity=0.238 Sum_probs=28.7
Q ss_pred cCCCeEEEccceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEeceEEEecCCcc
Q psy8943 25 LRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAI 78 (134)
Q Consensus 25 ~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~g~~~~~~a~~~vIlaaGai 78 (134)
...+++|..++.|+.+..+. +.+ .|.+. ++. .+.+ +.||.|.|+-
T Consensus 122 ~~~gv~v~~~~~v~~i~~~~----~~v-~v~~~-~g~--~~~a-d~vI~AdG~~ 166 (403)
T PRK07333 122 EALGIDLREATSVTDFETRD----EGV-TVTLS-DGS--VLEA-RLLVAADGAR 166 (403)
T ss_pred HhCCCEEEcCCEEEEEEEcC----CEE-EEEEC-CCC--EEEe-CEEEEcCCCC
Confidence 34589999999999986552 222 23332 443 4566 6777777753
No 224
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=24.85 E-value=2.2e+02 Score=23.42 Aligned_cols=55 Identities=9% Similarity=0.094 Sum_probs=36.6
Q ss_pred hhcCCCeEEEccceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEeceEEEecCCcccCCchhhhcccc
Q psy8943 23 IRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLLMVSGGS 90 (134)
Q Consensus 23 ~~~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~g~~~~~~a~~~vIlaaGai~tP~lLl~SGig 90 (134)
.+.+.++++++++.|+++.- . .|.+. ++. .+.+ +.|++|.|..-.+.+|..+|+.
T Consensus 198 ~l~~~gI~i~~~~~v~~i~~------~---~v~~~-~g~--~~~~-D~vl~a~G~~pn~~~l~~~gl~ 252 (438)
T PRK13512 198 ELDKREIPYRLNEEIDAING------N---EVTFK-SGK--VEHY-DMIIEGVGTHPNSKFIESSNIK 252 (438)
T ss_pred HHHhcCCEEEECCeEEEEeC------C---EEEEC-CCC--EEEe-CEEEECcCCCcChHHHHhcCcc
Confidence 34566899999999999841 1 24433 343 3555 6899999987666666666653
No 225
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=24.12 E-value=2.9e+02 Score=22.12 Aligned_cols=44 Identities=25% Similarity=0.290 Sum_probs=28.7
Q ss_pred cCCCeEEEccceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEeceEEEecCCc
Q psy8943 25 LRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGA 77 (134)
Q Consensus 25 ~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~g~~~~~~a~~~vIlaaGa 77 (134)
..++++|..+++|+.+..+. +.+ .|.+. +|. ++.+ +.||.|-|.
T Consensus 122 ~~~~i~i~~~~~v~~~~~~~----~~~-~v~~~-~g~--~~~~-~lvIgADG~ 165 (384)
T PRK08849 122 QYPNLTLMCPEKLADLEFSA----EGN-RVTLE-SGA--EIEA-KWVIGADGA 165 (384)
T ss_pred hCCCeEEECCCceeEEEEcC----CeE-EEEEC-CCC--EEEe-eEEEEecCC
Confidence 45689999999999997762 222 24443 443 5666 677777665
No 226
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=23.45 E-value=3.3e+02 Score=22.71 Aligned_cols=60 Identities=13% Similarity=0.217 Sum_probs=37.3
Q ss_pred hhhcCCCeEEEccceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEeceEEEecCCcccCCchh--hhcccc
Q psy8943 22 PIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLL--MVSGGS 90 (134)
Q Consensus 22 ~~~~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~g~~~~~~a~~~vIlaaGai~tP~lL--l~SGig 90 (134)
..+...++++++++.|++|.-+. +.+ .|.+. ++. .+.+ +.|+++.|..-...+| ..+|+.
T Consensus 226 ~~L~~~gV~i~~~~~v~~v~~~~----~~~-~v~~~-~g~--~l~~-D~vl~a~G~~pn~~~l~l~~~gl~ 287 (466)
T PRK07845 226 EVFARRGMTVLKRSRAESVERTG----DGV-VVTLT-DGR--TVEG-SHALMAVGSVPNTAGLGLEEAGVE 287 (466)
T ss_pred HHHHHCCcEEEcCCEEEEEEEeC----CEE-EEEEC-CCc--EEEe-cEEEEeecCCcCCCCCCchhhCce
Confidence 33456689999999999986431 222 23332 443 4566 6899999977666553 334553
No 227
>PF09556 RE_HaeIII: HaeIII restriction endonuclease; InterPro: IPR019059 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry represents the restriction endonuclease HaeIII, which recognises and cleaves the double-stranded sequence GG^CC.
Probab=23.43 E-value=53 Score=26.41 Aligned_cols=70 Identities=26% Similarity=0.292 Sum_probs=45.1
Q ss_pred EeccCCCCCeEEEEEEEeCCeEEEEEeceEEEecCCcccCCchhhhcccccccce--eEEecC-CCCChhH-HHhcCCCC
Q psy8943 41 LFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLLMVSGGSSVLNA--MIYVRG-NKNDYDQ-WERLGNSG 116 (134)
Q Consensus 41 ~~~~~~~~~~a~gV~~~~~g~~~~~~a~~~vIlaaGai~tP~lLl~SGig~~~n~--~~~~~g-~~~d~~~-w~~~~~~~ 116 (134)
.-++.|..|-|..|.+..++..|.+ |++-..|= ..|.|- ...||-+ |..++...
T Consensus 80 Q~D~~G~~GDVRDiliiR~~i~WEI----------------------GlS~KHNH~AvKHSRLS~~lDFG~~W~gipcSq 137 (300)
T PF09556_consen 80 QSDAKGQKGDVRDILIIRDNIEWEI----------------------GLSCKHNHFAVKHSRLSHKLDFGKEWFGIPCSQ 137 (300)
T ss_pred cccCCCCcCCceEEEEEecCCcEEE----------------------EEeeeccchhhhhcccCCcCCCchhhcCCCccH
Confidence 3344444456777776666555544 44444443 346674 4558876 88887777
Q ss_pred CCccccchhHhhcCcC
Q psy8943 117 WGYKDVLPYFKKSEDN 132 (134)
Q Consensus 117 w~~~~~~p~~~~~~~~ 132 (134)
==|+++.|-|..++.+
T Consensus 138 ~Yw~~I~PiF~~L~~~ 153 (300)
T PF09556_consen 138 NYWDEIKPIFDMLEEE 153 (300)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7789999999988744
No 228
>PTZ00058 glutathione reductase; Provisional
Probab=23.33 E-value=2.3e+02 Score=24.63 Aligned_cols=55 Identities=18% Similarity=0.141 Sum_probs=33.3
Q ss_pred hcCCCeEEEccceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEeceEEEecCCcccCCchhh
Q psy8943 24 RLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLLM 85 (134)
Q Consensus 24 ~~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~g~~~~~~a~~~vIlaaGai~tP~lLl 85 (134)
+...++++++++.|.+|.-+. .+.+ .+.+. ++. ..+.+ +.|++|.|..-...+|-
T Consensus 288 L~~~GV~i~~~~~V~~I~~~~---~~~v-~v~~~-~~~-~~i~a-D~VlvA~Gr~Pn~~~L~ 342 (561)
T PTZ00058 288 MKKNNINIITHANVEEIEKVK---EKNL-TIYLS-DGR-KYEHF-DYVIYCVGRSPNTEDLN 342 (561)
T ss_pred HHHCCCEEEeCCEEEEEEecC---CCcE-EEEEC-CCC-EEEEC-CEEEECcCCCCCccccC
Confidence 345689999999999986331 1112 12222 222 35667 79999999665544443
No 229
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=23.31 E-value=3.4e+02 Score=21.82 Aligned_cols=44 Identities=16% Similarity=0.342 Sum_probs=28.4
Q ss_pred cCCCeEEEccceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEeceEEEecCCc
Q psy8943 25 LRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGA 77 (134)
Q Consensus 25 ~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~g~~~~~~a~~~vIlaaGa 77 (134)
..++++|..+++|+.|..+. +. ..|.+. +|. .+.+ +.||.|-|+
T Consensus 123 ~~~~v~v~~~~~v~~i~~~~----~~-~~v~~~-~g~--~~~a-~lvIgADG~ 166 (405)
T PRK08850 123 KQDNVTLLMPARCQSIAVGE----SE-AWLTLD-NGQ--ALTA-KLVVGADGA 166 (405)
T ss_pred cCCCeEEEcCCeeEEEEeeC----Ce-EEEEEC-CCC--EEEe-CEEEEeCCC
Confidence 44689999999999987652 22 234433 443 4666 677777774
No 230
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=22.98 E-value=3.3e+02 Score=22.62 Aligned_cols=54 Identities=15% Similarity=0.172 Sum_probs=34.9
Q ss_pred hcCCCeEEEccceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEeceEEEecCCcccCCchh
Q psy8943 24 RLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLL 84 (134)
Q Consensus 24 ~~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~g~~~~~~a~~~vIlaaGai~tP~lL 84 (134)
+...++++++++.|++|.-+. ++ ...|.+. ++. ..+.+ +.||+|.|..-...+|
T Consensus 217 l~~~gI~i~~~~~v~~i~~~~---~~-~~~v~~~-~g~-~~i~~-D~vi~a~G~~pn~~~l 270 (450)
T TIGR01421 217 YEKEGINVHKLSKPVKVEKTV---EG-KLVIHFE-DGK-SIDDV-DELIWAIGRKPNTKGL 270 (450)
T ss_pred HHHcCCEEEcCCEEEEEEEeC---Cc-eEEEEEC-CCc-EEEEc-CEEEEeeCCCcCcccC
Confidence 345689999999999996431 12 1233332 342 35666 7899999977666553
No 231
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=22.65 E-value=3.1e+02 Score=22.49 Aligned_cols=47 Identities=19% Similarity=0.278 Sum_probs=27.4
Q ss_pred CeEEEccceEEEEEeccCC--CCCeEEEEEEEeCCeEEEEEeceEEEecCCcc
Q psy8943 28 NLHIAMETQALRLLFDKSG--PVPKAVGIEILRDGRKHIIRAKKEIISSAGAI 78 (134)
Q Consensus 28 nl~i~t~~~V~ri~~~~~~--~~~~a~gV~~~~~g~~~~~~a~~~vIlaaGai 78 (134)
|+++..+++|+.+..+... +.+.-..|.+. +|. ++++ +.+|.|-|+-
T Consensus 134 ~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~-~g~--~i~a-~llVgADG~~ 182 (437)
T TIGR01989 134 NVKILNPARLISVTIPSKYPNDNSNWVHITLS-DGQ--VLYT-KLLIGADGSN 182 (437)
T ss_pred CeEEecCCeeEEEEeccccccCCCCceEEEEc-CCC--EEEe-eEEEEecCCC
Confidence 7999999999999764210 01111233332 443 5677 5666666653
No 232
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=22.45 E-value=3.8e+02 Score=20.86 Aligned_cols=49 Identities=22% Similarity=0.234 Sum_probs=34.5
Q ss_pred CCCeEEEccceEEEEEeccCCCCCeEEEEEEEe-----CC---eEEEEEeceEEEecCCcc
Q psy8943 26 RKNLHIAMETQALRLLFDKSGPVPKAVGIEILR-----DG---RKHIIRAKKEIISSAGAI 78 (134)
Q Consensus 26 ~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~-----~g---~~~~~~a~~~vIlaaGai 78 (134)
.++++|+....|+.|.+.. +.|+.||.+-- .+ .+..+++ +.||=|+|.-
T Consensus 108 ~aGakifn~~~vEDvi~r~---~~rV~GvViNWt~V~~~glHvDPl~i~a-k~ViDaTGHd 164 (230)
T PF01946_consen 108 DAGAKIFNLTSVEDVIVRE---DDRVAGVVINWTPVEMAGLHVDPLTIRA-KVVIDATGHD 164 (230)
T ss_dssp TTTEEEEETEEEEEEEEEC---SCEEEEEEEEEHHHHTT--T-B-EEEEE-SEEEE---SS
T ss_pred cCCCEEEeeeeeeeeEEEc---CCeEEEEEEEehHHhHhhcCCCcceEEE-eEEEeCCCCc
Confidence 4899999999999999883 36999997642 22 3567888 7888888753
No 233
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=22.05 E-value=3e+02 Score=23.28 Aligned_cols=54 Identities=9% Similarity=0.201 Sum_probs=35.2
Q ss_pred hhcCCCeEEEccceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEeceEEEecCCcccCCchh
Q psy8943 23 IRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLL 84 (134)
Q Consensus 23 ~~~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~g~~~~~~a~~~vIlaaGai~tP~lL 84 (134)
.+.+.++++++++.|++|.-+. + ....|.+. ++. .+.+ ..|++|.|..-...+|
T Consensus 240 ~L~~~GI~i~~~~~v~~i~~~~---~-~~~~v~~~-~g~--~i~~-D~vl~a~G~~Pn~~~l 293 (486)
T TIGR01423 240 QLRANGINIMTNENPAKVTLNA---D-GSKHVTFE-SGK--TLDV-DVVMMAIGRVPRTQTL 293 (486)
T ss_pred HHHHcCCEEEcCCEEEEEEEcC---C-ceEEEEEc-CCC--EEEc-CEEEEeeCCCcCcccC
Confidence 3456789999999999986541 1 22344442 343 4666 6899999976555544
No 234
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=21.49 E-value=4.5e+02 Score=24.54 Aligned_cols=49 Identities=20% Similarity=0.211 Sum_probs=30.1
Q ss_pred CCCeEEEccceEEEEEeccCCCCCeEEEEEEEe-------C----CeEEEEEeceEEEecCCcccC
Q psy8943 26 RKNLHIAMETQALRLLFDKSGPVPKAVGIEILR-------D----GRKHIIRAKKEIISSAGAINS 80 (134)
Q Consensus 26 ~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~-------~----g~~~~~~a~~~vIlaaGai~t 80 (134)
.+|+++++++.|..+.-. +.+.-++-.. . ...+.+.+ +.||||.|+...
T Consensus 228 ~~~v~v~~~t~V~~i~~~-----~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a-~~VILATGa~~r 287 (985)
T TIGR01372 228 MPEVTLLPRTTAFGYYDH-----NTVGALERVTDHLDAPPKGVPRERLWRIRA-KRVVLATGAHER 287 (985)
T ss_pred CCCcEEEcCCEEEEEecC-----CeEEEEEEeeeccccccCCccccceEEEEc-CEEEEcCCCCCc
Confidence 457999999999887321 2332221110 1 12235777 799999999643
No 235
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=20.84 E-value=4e+02 Score=23.47 Aligned_cols=60 Identities=13% Similarity=0.243 Sum_probs=36.5
Q ss_pred CCCeEEEccceEEEEEeccCCCCC-eEEEEEEEe--------------CCeEEEEEeceEEEecCCcccCCchhhhccc
Q psy8943 26 RKNLHIAMETQALRLLFDKSGPVP-KAVGIEILR--------------DGRKHIIRAKKEIISSAGAINSPQLLMVSGG 89 (134)
Q Consensus 26 ~~nl~i~t~~~V~ri~~~~~~~~~-~a~gV~~~~--------------~g~~~~~~a~~~vIlaaGai~tP~lLl~SGi 89 (134)
..+++|..++.+.+|.-+. ++ .++.+.+.. .+....+.+ +.||+|.|..-.+.+|...|+
T Consensus 373 ~eGV~i~~~~~~~~i~~~~---~~~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~~-D~VI~AiG~~p~~~ll~~~gl 447 (652)
T PRK12814 373 AEGVSLRELAAPVSIERSE---GGLELTAIKMQQGEPDESGRRRPVPVEGSEFTLQA-DTVISAIGQQVDPPIAEAAGI 447 (652)
T ss_pred HcCCcEEeccCcEEEEecC---CeEEEEEEEEEecccCCCCCCcceecCCceEEEEC-CEEEECCCCcCCcccccccCc
Confidence 3578999998888875431 12 233333321 234456777 799999997655555544444
No 236
>PRK13748 putative mercuric reductase; Provisional
Probab=20.76 E-value=3.7e+02 Score=22.82 Aligned_cols=51 Identities=14% Similarity=0.148 Sum_probs=33.2
Q ss_pred hcCCCeEEEccceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEeceEEEecCCcccCCchh
Q psy8943 24 RLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLL 84 (134)
Q Consensus 24 ~~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~g~~~~~~a~~~vIlaaGai~tP~lL 84 (134)
+...+++|++++.|++|..+ ++. +.+..++. .+.+ +.||+|.|..-...+|
T Consensus 320 l~~~gI~i~~~~~v~~i~~~----~~~---~~v~~~~~--~i~~-D~vi~a~G~~pn~~~l 370 (561)
T PRK13748 320 FRAEGIEVLEHTQASQVAHV----DGE---FVLTTGHG--ELRA-DKLLVATGRAPNTRSL 370 (561)
T ss_pred HHHCCCEEEcCCEEEEEEec----CCE---EEEEecCC--eEEe-CEEEEccCCCcCCCCc
Confidence 44568999999999998654 122 22222222 3666 7899999976665554
No 237
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=20.60 E-value=3.9e+02 Score=22.68 Aligned_cols=62 Identities=18% Similarity=0.164 Sum_probs=38.3
Q ss_pred cCCCeEEEccceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEeceEEEecCCcc-cCCch-hhhccccccc
Q psy8943 25 LRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAI-NSPQL-LMVSGGSSVL 93 (134)
Q Consensus 25 ~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~g~~~~~~a~~~vIlaaGai-~tP~l-Ll~SGig~~~ 93 (134)
...++++.+++.|+++.-.. +. ..|.+.+ +....+++ ..+++|.|-. ++.-| |..-|+--..
T Consensus 225 ~~~gv~i~~~~~v~~~~~~~----~~-v~v~~~~-g~~~~~~a-d~vLvAiGR~Pn~~~LgLe~~Gv~~~~ 288 (454)
T COG1249 225 EKGGVKILLNTKVTAVEKKD----DG-VLVTLED-GEGGTIEA-DAVLVAIGRKPNTDGLGLENAGVELDD 288 (454)
T ss_pred HhCCeEEEccceEEEEEecC----Ce-EEEEEec-CCCCEEEe-eEEEEccCCccCCCCCChhhcCceECC
Confidence 34679999999999986552 22 3444443 33226667 7999999965 44433 3334555433
No 238
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=20.52 E-value=4.8e+02 Score=21.39 Aligned_cols=51 Identities=14% Similarity=0.206 Sum_probs=32.6
Q ss_pred cCCCeEEEccceEEEEEeccCCCCCeEEEEEEE-eCCeEEEEEeceEEEecCCcccCCch
Q psy8943 25 LRKNLHIAMETQALRLLFDKSGPVPKAVGIEIL-RDGRKHIIRAKKEIISSAGAINSPQL 83 (134)
Q Consensus 25 ~~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~-~~g~~~~~~a~~~vIlaaGai~tP~l 83 (134)
... ++|++++.|.+|.-+ ++ .+|.+. .++....+.+ +.+++|.|..-....
T Consensus 221 ~~~-I~i~~~~~v~~i~~~----~~--~~v~~~~~~~~~~~i~~-D~vi~a~G~~p~~~~ 272 (460)
T PRK06292 221 SKE-FKIKLGAKVTSVEKS----GD--EKVEELEKGGKTETIEA-DYVLVATGRRPNTDG 272 (460)
T ss_pred hhc-cEEEcCCEEEEEEEc----CC--ceEEEEEcCCceEEEEe-CEEEEccCCccCCCC
Confidence 445 999999999998643 11 234332 2444456777 688999997544443
No 239
>KOG1336|consensus
Probab=20.52 E-value=3.1e+02 Score=23.69 Aligned_cols=57 Identities=16% Similarity=0.286 Sum_probs=0.0
Q ss_pred CeEEEccceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEeceEEEecCCcccCCchhhhcccccccceeEE
Q psy8943 28 NLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLLMVSGGSSVLNAMIY 98 (134)
Q Consensus 28 nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~~g~~~~~~a~~~vIlaaGai~tP~lLl~SGig~~~n~~~~ 98 (134)
+++++.++.|++++++. .-.+..+|+...+ ...|||.|. +|.-|.-.|.. ..|+...
T Consensus 141 gIe~~~~t~v~~~D~~~--------K~l~~~~Ge~~ky---s~LilATGs--~~~~l~~pG~~-~~nv~~i 197 (478)
T KOG1336|consen 141 GIELILGTSVVKADLAS--------KTLVLGNGETLKY---SKLIIATGS--SAKTLDIPGVE-LKNVFYL 197 (478)
T ss_pred CceEEEcceeEEeeccc--------cEEEeCCCceeec---ceEEEeecC--ccccCCCCCcc-ccceeee
No 240
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=20.47 E-value=4.6e+02 Score=24.50 Aligned_cols=54 Identities=11% Similarity=0.124 Sum_probs=37.1
Q ss_pred CCCeEEEccceEEEEEeccCCCCCeEEEEEEEe----------------CCeEEEEEeceEEEecCCcccCCc
Q psy8943 26 RKNLHIAMETQALRLLFDKSGPVPKAVGIEILR----------------DGRKHIIRAKKEIISSAGAINSPQ 82 (134)
Q Consensus 26 ~~nl~i~t~~~V~ri~~~~~~~~~~a~gV~~~~----------------~g~~~~~~a~~~vIlaaGai~tP~ 82 (134)
..++++...+.+.+|.-+. .++++++|++.. .|....+.+ +.||+|.|..-.+.
T Consensus 496 eeGV~~~~~~~p~~i~~d~--~~~~V~~v~~~~~~l~~~d~~Gr~~~~~~G~e~~i~a-D~VI~AiG~~p~~~ 565 (944)
T PRK12779 496 EEGINLAVLRAPREFIGDD--HTHFVTHALLDVNELGEPDKSGRRSPKPTGEIERVPV-DLVIMALGNTANPI 565 (944)
T ss_pred HCCCEEEeCcceEEEEecC--CCCEEEEEEEEEEEeccccCcCceeeecCCceEEEEC-CEEEEcCCcCCChh
Confidence 4689999999999986542 234787876531 233456777 79999999765554
Done!