RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8943
(134 letters)
>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase,
flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}
Length = 566
Score = 140 bits (356), Expect = 2e-40
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 3/91 (3%)
Query: 1 MIAQGTIRRGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFD---KSGPVPKAVGIEIL 57
+ ++ G R S+S A+LRP + R NL + + Q +L+ P + V
Sbjct: 195 SWSIASVGNGQRSSSSTAYLRPAQSRPNLSVLINAQVTKLVNSGTTNGLPAFRCVEYAEQ 254
Query: 58 RDGRKHIIRAKKEIISSAGAINSPQLLMVSG 88
+ AKKE++ SAG++ +P LL +SG
Sbjct: 255 EGAPTTTVCAKKEVVLSAGSVGTPILLQLSG 285
Score = 104 bits (261), Expect = 2e-27
Identities = 14/46 (30%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 88 GGSSVLNAMIYVRGNKNDYDQWERL-GNSGWGYKDVLPYFKKSEDN 132
GGSS ++ M+ +RG+ D+D++ + G+ GW + ++ + +K+E
Sbjct: 85 GGSSSVHYMVMMRGSTEDFDRYAAVTGDEGWNWDNIQQFVRKNEMV 130
>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A
{Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*
Length = 583
Score = 136 bits (345), Expect = 6e-39
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 1 MIAQGTIRR-GSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEI-LR 58
+ T+ R ++ +L P R NL + ++L ++G P+AVG+E
Sbjct: 213 SMFPNTLHEDQVRSDAAREWLLPNYQRPNLQVLTGQYVGKVLLSQNGTTPRAVGVEFGTH 272
Query: 59 DGRKHIIRAKKEIISSAGAINSPQLLMVSG 88
G H + AK E++ +AG+ SP +L SG
Sbjct: 273 KGNTHNVYAKHEVLLAAGSAVSPTILEYSG 302
Score = 105 bits (265), Expect = 9e-28
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 88 GGSSVLNAMIYVRGNKNDYDQWERL-GNSGWGYKDVLPYFKKSEDNRN 134
GGS+++N + R +K D WE + GN GW + +V Y ++E R
Sbjct: 101 GGSTLVNGGTWTRPHKAQVDSWETVFGNEGWNWDNVAAYSLQAERARA 148
>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG
BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP:
c.3.1.2 d.16.1.1
Length = 587
Score = 135 bits (342), Expect = 2e-38
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 2/90 (2%)
Query: 1 MIAQGTI-RRGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILR- 58
+ + R ++A+L P R NL I ++LF ++ P+AVG+
Sbjct: 217 SMIMNNLDENQVRVDAARAWLLPNYQRSNLEILTGQMVGKVLFKQTASGPQAVGVNFGTN 276
Query: 59 DGRKHIIRAKKEIISSAGAINSPQLLMVSG 88
+ AK E++ +AG+ SP +L SG
Sbjct: 277 KAVNFDVFAKHEVLLAAGSAISPLILEYSG 306
Score = 106 bits (267), Expect = 4e-28
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 88 GGSSVLNAMIYVRGNKNDYDQWERL-GNSGWGYKDVLPYFKKSEDNRN 134
GGS+++N + R +K D WE++ G GW + ++ Y KK+E R
Sbjct: 105 GGSTLINGDSWTRPDKVQIDSWEKVFGMEGWNWDNMFEYMKKAEAART 152
>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond,
cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A
{Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A*
3gdn_A*
Length = 536
Score = 125 bits (317), Expect = 4e-35
Identities = 23/91 (25%), Positives = 37/91 (40%), Gaps = 5/91 (5%)
Query: 1 MIAQGTIRRGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDG 60
I T + L NL + + +++F P A G+
Sbjct: 182 RITGSTFDNKGTRHAADELLNKGN-SNNLRVGVHASVEKIIFSN-APGLTATGVIYRDSN 239
Query: 61 ---RKHIIRAKKEIISSAGAINSPQLLMVSG 88
+ +R+K E+I SAG I +PQLL++SG
Sbjct: 240 GTPHQAFVRSKGEVIVSAGTIGTPQLLLLSG 270
Score = 95.7 bits (239), Expect = 3e-24
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
Query: 88 GGSSVLNAMIYVRGNKNDYDQWERLGNSGWGYKDVLPYFKKSEDNR 133
GG+S++NA +Y R N + Y W V ++ ED
Sbjct: 104 GGTSIINAGVYARANTSIYSAS----GVDWDMDLVNQTYEWVEDTI 145
>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently
linked FAD, C4A-adduct, flavoprotein, oxidoreductase;
HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A*
3ljp_A*
Length = 546
Score = 119 bits (302), Expect = 5e-33
Identities = 29/88 (32%), Positives = 52/88 (59%), Gaps = 6/88 (6%)
Query: 4 QGTIRR-GSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRD--G 60
Q R G+R S+S +++ PI ++N + +A +L+FD + G++I+ G
Sbjct: 198 QINRRADGTRSSSSVSYIHPIVEQENFTLLTGLRARQLVFDADR---RCTGVDIVDSAFG 254
Query: 61 RKHIIRAKKEIISSAGAINSPQLLMVSG 88
H + A+ E++ S GAI++P+LLM+SG
Sbjct: 255 HTHRLTARNEVVLSTGAIDTPKLLMLSG 282
Score = 98.0 bits (245), Expect = 4e-25
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 88 GGSSVLNAMIYVRGNKNDYDQWE-RLGNSGWGYKDVLPYFKKSEDN 132
GG S N+ I + D D+WE + G +GW + P +K+ E N
Sbjct: 94 GGCSSHNSCIAFWAPREDLDEWEAKYGATGWNAEAAWPLYKRLETN 139
>3q9t_A Choline dehydrogenase and related flavoproteins;
glucose-methanol-choline oxidoreductase family, formate
OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A
{Aspergillus oryzae}
Length = 577
Score = 119 bits (301), Expect = 8e-33
Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 7/89 (7%)
Query: 1 MIAQGTIRRGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEIL-RD 59
TI RG R +FL ++ + N+ I E + RL+ +++ G+ ++
Sbjct: 197 THCCDTIYRGQRSG---SFL-FVKNKPNITIVPEVHSKRLIINEADR--TCKGVTVVTAA 250
Query: 60 GRKHIIRAKKEIISSAGAINSPQLLMVSG 88
G + A +E+I S G +P+LLM+SG
Sbjct: 251 GNELNFFADREVILSQGVFETPKLLMLSG 279
Score = 111 bits (280), Expect = 7e-30
Identities = 19/47 (40%), Positives = 27/47 (57%)
Query: 88 GGSSVLNAMIYVRGNKNDYDQWERLGNSGWGYKDVLPYFKKSEDNRN 134
GGSS LN +V G+K +DQWE G W + ++PY +KS +
Sbjct: 91 GGSSSLNYFTWVPGHKATFDQWEEFGGKEWTWDPLVPYLRKSATYHD 137
>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding,
oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}
Length = 526
Score = 117 bits (297), Expect = 3e-32
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
Query: 4 QGTIRRGSRCSTSKAFLRP-IRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRK 62
IR G R + + A+L +R RKNL I ++ RL + + + +E++
Sbjct: 200 SLNIRDGRRVTAADAWLTKAVRGRKNLTILTGSRVRRLKLEGN----QVRSLEVVGRQGS 255
Query: 63 HIIRAKKEIISSAGAINSPQLLMVSG 88
+ A +I+ AGA+ SP LLM SG
Sbjct: 256 AEVFAD-QIVLCAGALESPALLMRSG 280
Score = 97.9 bits (245), Expect = 4e-25
Identities = 20/46 (43%), Positives = 32/46 (69%), Gaps = 1/46 (2%)
Query: 88 GGSSVLNAMIYVRGNKNDYDQW-ERLGNSGWGYKDVLPYFKKSEDN 132
GGSS L+AM Y+RG+ +D+ W + G+ WG+ ++LP F+ ED+
Sbjct: 98 GGSSCLHAMGYMRGHPSDFQAWVDASGDRRWGWDELLPVFQAIEDH 143
>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold,
alpha/beta structure, rossman 6-hydroxylated FAD,
oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A
{Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1
PDB: 1naa_A*
Length = 546
Score = 114 bits (288), Expect = 5e-31
Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 8/89 (8%)
Query: 4 QGTIRRGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRD---- 59
G R +L+ R N ++ + S + +G++
Sbjct: 186 AFDFLNGKRAGPVATYLQTALARPNFTFKTNVMVSNVVRNGS----QILGVQTNDPTLGP 241
Query: 60 GRKHIIRAKKEIISSAGAINSPQLLMVSG 88
+ K +I SAGA + ++L SG
Sbjct: 242 NGFIPVTPKGRVILSAGAFGTSRILFQSG 270
Score = 82.2 bits (204), Expect = 2e-19
Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 7/47 (14%)
Query: 88 GGSSVLNAMIYVRGNKNDYDQWERLGNSGW--GYKDVLPYFKKSEDN 132
GG + +N +Y N D+ + GW + + PY K
Sbjct: 94 GGGTSVNGALYWYPNDGDFS-----SSVGWPSSWTNHAPYTSKLSSR 135
>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer,
GMC oxidoredu PHBH fold, rossmann domain,
oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes
ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A*
2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A*
3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A*
3fdy_A* ...
Length = 623
Score = 47.1 bits (111), Expect = 3e-07
Identities = 16/111 (14%), Positives = 37/111 (33%), Gaps = 7/111 (6%)
Query: 1 MIAQGTIRRGSRCSTSKAFL------RPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGI 54
+ A S++ + ++ R++ + +++ I
Sbjct: 241 LAATRRSPTFVEWSSANTVFDLQNRPNTDAPEERFNLFPAVACERVVRNALNSEIESLHI 300
Query: 55 EILRDGRKHIIRAKKEIISSAGAINSPQLLMVSGGSSVLNAMIYVRGNKND 105
L G + I+A + +AGA+++ QLL+ SG +
Sbjct: 301 HDLISGDRFEIKADV-YVLTAGAVHNTQLLVNSGFGQLGRPNPANPPELLP 350
>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism,
oxidoreductase, atomic RESO; HET: FAD; 0.92A
{Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A*
1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A*
1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*
Length = 504
Score = 42.3 bits (99), Expect = 1e-05
Identities = 16/91 (17%), Positives = 32/91 (35%), Gaps = 5/91 (5%)
Query: 6 TIRRGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHII 65
+ S K +L + I Q + K G A+ +E K +
Sbjct: 214 YGNNHGKQSLDKTYLAAALGTGKVTIQTLHQVKTIRQTKDGG--YALTVEQKDTDGKLLA 271
Query: 66 R---AKKEIISSAGAINSPQLLMVSGGSSVL 93
+ + + AG++ S +LL+ + + L
Sbjct: 272 TKEISCRYLFLGAGSLGSTELLVRARDTGTL 302
>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate
dehydrogenase activity, cell inner membrane, trica acid
cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB:
1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A*
2wu2_A* 2wu5_A*
Length = 588
Score = 38.8 bits (91), Expect = 2e-04
Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 25 LRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGA 77
L+ + I E AL L+ ++ G V + I G +A+ ++++ GA
Sbjct: 154 LKNHTTIFSEWYALDLVKNQDGAVVGCTALCI-ETGEVVYFKARATVLATGGA 205
>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD;
1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1
PDB: 3cox_A*
Length = 507
Score = 38.2 bits (88), Expect = 4e-04
Identities = 13/92 (14%), Positives = 30/92 (32%), Gaps = 7/92 (7%)
Query: 6 TIRRGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEIL----RDGR 61
+ S K +L L I + ++ +V +E +
Sbjct: 219 YGNNAGKKSLDKTYLAQAAATGKLTITTLHRVTKVAPATGSG--YSVTMEQIDEQGNVVA 276
Query: 62 KHIIRAKKEIISSAGAINSPQLLMVSGGSSVL 93
++ A + +AG++ + +LL+ L
Sbjct: 277 TKVVTAD-RVFFAAGSVGTSKLLVSMKAQGHL 307
>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase,
dehydogenase, steroid catabolism; HET: FAD; 1.60A
{Rhodococcus jostii} PDB: 4at2_A*
Length = 510
Score = 35.0 bits (81), Expect = 0.004
Identities = 11/52 (21%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 25 LRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAG 76
+ + + + L+ D +G V VGI + G++ +RA++ ++ + G
Sbjct: 213 EKLGVRAEYDMRVQTLVTDDTGRV---VGIVAKQYGKEVAVRARRGVVLATG 261
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD;
2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1d4e_A* 1d4c_A*
Length = 572
Score = 34.7 bits (80), Expect = 0.005
Identities = 12/62 (19%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 25 LRKNLHIAMETQALRLLFDKSGPVPKAVGIEILR-DGRKHIIRAKKEIISSAGAINSPQL 83
+++ I + ++ +R+L D SG V G+ + ++I+A +I++ G + +
Sbjct: 266 VKRGTDIRLNSRVVRILEDASGKV---TGVLVKGEYTGYYVIKADAVVIAAGGFAKNNER 322
Query: 84 LM 85
+
Sbjct: 323 VS 324
>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A
{Desulfovibrio gigas}
Length = 662
Score = 34.2 bits (78), Expect = 0.009
Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Query: 23 IRLRKNLHIAMETQALRLLFDKS--GPVPKAVGIEILRDGRKHIIRAKKEIISSAGAIN 79
I ++LL DK+ + AVG + R HI +A +++ GA+N
Sbjct: 177 KNALGQDRIIERIFIVKLLLDKNTPNRIAGAVGFNL-RANEVHIFKANAMVVACGGAVN 234
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.9 bits (77), Expect = 0.013
Identities = 25/107 (23%), Positives = 40/107 (37%), Gaps = 17/107 (15%)
Query: 10 GSRC--STSKAFLRPIRLRKNLHIAMETQA---LRLLFDKSGPVPKAVGIEILRDGRKHI 64
G RC + L P L +L E L + S + V + + H+
Sbjct: 307 GVRCYEAYPNTSLPPSILEDSLENN-EGVPSPMLSI----SNLTQEQV-QDYVNKTNSHL 360
Query: 65 IRAKKEIISSAGAINSPQLLMVSGGSSVLNAM-IYVRGNK--NDYDQ 108
K+ IS +N + L+VSG L + + +R K + DQ
Sbjct: 361 PAGKQVEIS---LVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQ 404
>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A
{Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4
d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*
Length = 643
Score = 32.8 bits (75), Expect = 0.027
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 34 ETQALRLLFDKSGP--VPKAVGIEILRDGRKHIIRAKKEIISSAGA 77
LL D + P V AVG + R+ + ++ +AK I+++ GA
Sbjct: 173 RVFIFELLKDNNDPNAVAGAVGFSV-REPKFYVFKAKAVILATGGA 217
>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane
protein, heme protein, iron sulfur PROT cytochrome B,
oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus
gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A*
1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A*
3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A*
3aec_A* ...
Length = 621
Score = 32.3 bits (74), Expect = 0.036
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 25 LRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGA 77
LR + +E AL LL + G + + I DG H RAK +I++ G
Sbjct: 166 LRYDTSYFVEYFALDLLMEN-GECRGVIALCI-EDGTIHRFRAKNTVIATGGY 216
>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S,
4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD
HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1
c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*
Length = 660
Score = 31.1 bits (71), Expect = 0.094
Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Query: 25 LRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGA 77
L+ + I +A+ L+ G AV + L G AK +I++ G
Sbjct: 169 LKLGVSIQDRKEAIALIHQD-GKCYGAVVRD-LVTGDIIAYVAKGTLIATGGY 219
>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace,
succinate dehydrogenase, CO quinol, quinone,
oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia
coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A*
1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*
Length = 602
Score = 29.6 bits (67), Expect = 0.32
Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 27 KNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGA 77
+ E L +L D G V V + + +G IRA ++++ GA
Sbjct: 148 PQIQRFDEHFVLDILVDD-GHVRGLVAMN-MMEGTLVQIRANAVVMATGGA 196
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 0.37
Identities = 9/31 (29%), Positives = 16/31 (51%), Gaps = 9/31 (29%)
Query: 25 LRKNLHIAMETQALRLLFDKSGPVPKAVGIE 55
L+K ++ +L+L D S P A+ I+
Sbjct: 22 LKK-----LQA-SLKLYADDSAP---ALAIK 43
>1b7f_A Protein (SXL-lethal protein), RNA
(5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing
regulation, RNP domain, RNA complex; 2.60A {Drosophila
melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A*
1sxl_A 2sxl_A
Length = 168
Score = 26.4 bits (59), Expect = 2.9
Identities = 10/33 (30%), Positives = 13/33 (39%), Gaps = 3/33 (9%)
Query: 27 KNLHIAMETQALRLLFDKSGPVPKAVGIEILRD 59
L M + L LF GP+ I+RD
Sbjct: 9 NYLPQDMTDRELYALFRAIGPI---NTCRIMRD 38
>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase,
kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae}
SCOP: d.144.1.6
Length = 264
Score = 25.7 bits (56), Expect = 4.7
Identities = 7/49 (14%), Positives = 12/49 (24%)
Query: 5 GTIRRGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVG 53
+ R S F++ + E L L P +
Sbjct: 34 AAVFRLSAQGRPVLFVKTDLSGALNELQDEAARLSWLATTGVPCAAVLD 82
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase,
structural genomics; HET: PLP; 2.40A {Archaeoglobus
fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Length = 371
Score = 25.8 bits (57), Expect = 5.2
Identities = 3/31 (9%), Positives = 10/31 (32%)
Query: 75 AGAINSPQLLMVSGGSSVLNAMIYVRGNKND 105
+ + +G A+++ K+
Sbjct: 64 PKFLGCDVARVTNGAREAKFAVMHSLAKKDA 94
>3ejn_A SUSD homolog; structural genomics, joint center for structur
genomics, JCSG, protein structure initiative, PSI-2,
sugar protein; HET: MSE; 1.50A {Bacteroides fragilis
nctc 9343} SCOP: a.118.8.6
Length = 474
Score = 25.5 bits (55), Expect = 6.4
Identities = 8/49 (16%), Positives = 17/49 (34%)
Query: 84 LMVSGGSSVLNAMIYVRGNKNDYDQWERLGNSGWGYKDVLPYFKKSEDN 132
G + ++ + DQ+ + +GY D L +K +
Sbjct: 30 AFKRGTDGMYATKKVIQADGESADQYYKWTRGSFGYYDNLRNVQKMGEE 78
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA
complex, AU-rich element, transcription/RNA complex;
1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB:
1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Length = 167
Score = 25.2 bits (56), Expect = 6.7
Identities = 8/33 (24%), Positives = 13/33 (39%), Gaps = 3/33 (9%)
Query: 27 KNLHIAMETQALRLLFDKSGPVPKAVGIEILRD 59
L M + R LF G + +++RD
Sbjct: 8 NYLPQNMTQEEFRSLFGSIGEI---ESCKLVRD 37
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme,
megasynthase, fatty acid synthesis; 3.2A {Sus scrofa}
PDB: 2vz9_A*
Length = 2512
Score = 25.6 bits (56), Expect = 6.9
Identities = 8/35 (22%), Positives = 14/35 (40%)
Query: 24 RLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILR 58
+K + TQA ++ D++ A G L
Sbjct: 1064 HRQKLYTLQDTTQAADVVVDRNLNTVVAGGALFLG 1098
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA
binding domain, RNA recognition motif, SP factor, snRNP,
spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP:
d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Length = 292
Score = 24.9 bits (55), Expect = 9.3
Identities = 6/35 (17%), Positives = 12/35 (34%)
Query: 27 KNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGR 61
N + + +R L V ++ + LR
Sbjct: 123 TNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNT 157
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.397
Gapped
Lambda K H
0.267 0.0745 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,083,434
Number of extensions: 115898
Number of successful extensions: 347
Number of sequences better than 10.0: 1
Number of HSP's gapped: 324
Number of HSP's successfully gapped: 47
Length of query: 134
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 51
Effective length of database: 4,384,350
Effective search space: 223601850
Effective search space used: 223601850
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (23.8 bits)