RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8943
(134 letters)
>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus
niger [TaxId: 5061]}
Length = 385
Score = 75.7 bits (185), Expect = 9e-18
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 13 CSTSKAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEIL-RDGRKHIIRAKKEI 71
++ +L P R NL + ++L ++G P+AVG+E G H + AK E+
Sbjct: 224 SDAAREWLLPNYQRPNLQVLTGQYVGKVLLSQNGTTPRAVGVEFGTHKGNTHNVYAKHEV 283
Query: 72 ISSAGAINSPQLLMVSGGS 90
+ +AG+ SP +L SG
Sbjct: 284 LLAAGSAVSPTILEYSGIG 302
Score = 28.3 bits (62), Expect = 0.32
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 81 PQLLMVSGGSSVLNAMIYVRGNKNDYDQWERLGN-SGWGYKDVLPYFKKSEDNRN 134
+ GGS+++N + R +K D WE + GW + +V Y ++E R
Sbjct: 92 IRSGNGLGGSTLVNGGTWTRPHKAQVDSWETVFGNEGWNWDNVAAYSLQAERARA 146
>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium
amagasakiense [TaxId: 63559]}
Length = 391
Score = 64.9 bits (157), Expect = 5e-14
Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 1 MIAQGTIRRGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILR-D 59
MI R ++A+L P R NL I ++LF ++ P+AVG+
Sbjct: 218 MIMNNLDENQVRVDAARAWLLPNYQRSNLEILTGQMVGKVLFKQTASGPQAVGVNFGTNK 277
Query: 60 GRKHIIRAKKEIISSAGAINSPQLLMVSG 88
+ AK E++ +AG+ SP +L SG
Sbjct: 278 AVNFDVFAKHEVLLAAGSAISPLILEYSG 306
Score = 36.4 bits (83), Expect = 5e-04
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 91 SVLNAMIYVRGNKNDYDQWER-LGNSGWGYKDVLPYFKKSEDNRN 134
+++N + R +K D WE+ G GW + ++ Y KK+E R
Sbjct: 108 TLINGDSWTRPDKVQIDSWEKVFGMEGWNWDNMFEYMKKAEAART 152
>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC
family {Streptomyces sp. [TaxId: 1931]}
Length = 367
Score = 61.2 bits (147), Expect = 1e-12
Identities = 16/92 (17%), Positives = 31/92 (33%), Gaps = 7/92 (7%)
Query: 6 TIRRGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEIL----RDGR 61
+ S K +L + I Q + K G A+ +E +
Sbjct: 211 YGNNHGKQSLDKTYLAAALGTGKVTIQTLHQVKTIRQTKDGG--YALTVEQKDTDGKLLA 268
Query: 62 KHIIRAKKEIISSAGAINSPQLLMVSGGSSVL 93
I + + AG++ S +LL+ + + L
Sbjct: 269 TKEISCR-YLFLGAGSLGSTELLVRARDTGTL 299
>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of
flavocytochrome cellobiose dehydrogenase (CDH),
FAD-binding domain {Fungus (Phanerochaete chrysosporium)
[TaxId: 5306]}
Length = 360
Score = 60.0 bits (144), Expect = 2e-12
Identities = 16/86 (18%), Positives = 30/86 (34%), Gaps = 8/86 (9%)
Query: 8 RRGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDG----RKH 63
G R +L+ R N ++ + S + +G++
Sbjct: 185 LNGKRAGPVATYLQTALARPNFTFKTNVMVSNVVRNGS----QILGVQTNDPTLGPNGFI 240
Query: 64 IIRAKKEIISSAGAINSPQLLMVSGG 89
+ K +I SAGA + ++L SG
Sbjct: 241 PVTPKGRVILSAGAFGTSRILFQSGI 266
>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC
family {Brevibacterium sterolicum [TaxId: 1702]}
Length = 370
Score = 59.5 bits (143), Expect = 5e-12
Identities = 11/93 (11%), Positives = 28/93 (30%), Gaps = 9/93 (9%)
Query: 6 TIRRGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHII 65
+ S K +L L I + ++ + + + + +
Sbjct: 215 YGNNAGKKSLDKTYLAQAAATGKLTITTLHRVTKVAPATGS----GYSVTMEQIDEQGNV 270
Query: 66 RAK-----KEIISSAGAINSPQLLMVSGGSSVL 93
A + +AG++ + +LL+ L
Sbjct: 271 VATKVVTADRVFFAAGSVGTSKLLVSMKAQGHL 303
Score = 33.4 bits (75), Expect = 0.005
Identities = 9/44 (20%), Positives = 17/44 (38%)
Query: 85 MVSGGSSVLNAMIYVRGNKNDYDQWERLGNSGWGYKDVLPYFKK 128
GG S++N + V +N +++ +S Y P
Sbjct: 106 RGVGGGSLVNGGMAVTPKRNYFEEILPSVDSNEMYNKYFPRANT 149
>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot
fungus (Peniophora sp. SG) [TaxId: 204723]}
Length = 379
Score = 55.0 bits (131), Expect = 2e-10
Identities = 18/128 (14%), Positives = 40/128 (31%), Gaps = 7/128 (5%)
Query: 1 MIAQGTIRRGSRCSTSKAFLRPI------RLRKNLHIAMETQALRLLFDKSGPVPKAVGI 54
+ A S++ + ++ R++ + +++ I
Sbjct: 199 LAATRRSPTFVEWSSANTVFDLQNRPNTDAPEERFNLFPAVACERVVRNALNSEIESLHI 258
Query: 55 EILRDGRKHIIRAKKEIISSAGAINSPQLLMVSGGSSVLNAMIYVRGNKNDYDQWERLGN 114
L G + I+A + +AGA+++ QLL+ SG + R+G
Sbjct: 259 HDLISGDRFEIKA-DVYVLTAGAVHNTQLLVNSGFGQLGRPNPTNPPELLPSLGSHRMGF 317
Query: 115 SGWGYKDV 122
Sbjct: 318 DEKEDNCC 325
Score = 39.2 bits (90), Expect = 6e-05
Identities = 8/57 (14%), Positives = 15/57 (26%), Gaps = 10/57 (17%)
Query: 88 GGSSVLNAMIYVRGNKNDYDQWER----------LGNSGWGYKDVLPYFKKSEDNRN 134
+S + +VR N R +G + P F + +
Sbjct: 85 SPTSWQASTFFVRNGSNPEQDPLRNLSGQAVTRVVGGMSTHWTCATPRFDREQRPLL 141
>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond
(Prunus dulcis) [TaxId: 3755]}
Length = 351
Score = 48.4 bits (114), Expect = 4e-08
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 28 NLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHII--RAKKEIISSAGAINSPQLLM 85
NL + + +++F + + I +G H R+K E+I SAG I +PQLL+
Sbjct: 208 NLRVGVHASVEKIIFSNAPGLTATGVIYRDSNGTPHQAFVRSKGEVIVSAGTIGTPQLLL 267
Query: 86 VSG 88
+SG
Sbjct: 268 LSG 270
Score = 26.8 bits (58), Expect = 0.98
Identities = 8/37 (21%), Positives = 12/37 (32%), Gaps = 4/37 (10%)
Query: 96 MIYVRGNKNDYDQWERLGNSGWGYKDVLPYFKKSEDN 132
+Y R N + Y W V ++ ED
Sbjct: 112 GVYARANTSIYSAS----GVDWDMDLVNQTYEWVEDT 144
>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum
[TaxId: 44689]}
Length = 306
Score = 24.0 bits (51), Expect = 8.8
Identities = 9/24 (37%), Positives = 16/24 (66%), Gaps = 4/24 (16%)
Query: 78 INSPQLLMV----SGGSSVLNAMI 97
++ PQ+++V SG SSVL ++
Sbjct: 22 LDLPQIVVVGSQSSGKSSVLENIV 45
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.136 0.397
Gapped
Lambda K H
0.267 0.0452 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 505,403
Number of extensions: 21564
Number of successful extensions: 66
Number of sequences better than 10.0: 1
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 18
Length of query: 134
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 58
Effective length of database: 1,364,116
Effective search space: 79118728
Effective search space used: 79118728
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.0 bits)