BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8945
(219 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2JBV|A Chain A, Crystal Structure Of Choline Oxidase Reveals Insights Into
The Catalytic Mechanism
pdb|2JBV|B Chain B, Crystal Structure Of Choline Oxidase Reveals Insights Into
The Catalytic Mechanism
Length = 546
Score = 95.1 bits (235), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 65/202 (32%), Positives = 101/202 (50%), Gaps = 17/202 (8%)
Query: 13 DSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPILLKPKSRGYIQLNA 72
D LD PD+ H+ + P + ++ +G ++ P + +SRG ++L +
Sbjct: 341 DGLDRPDLMMHYGSV--------PFDMNTLRHGYPTTENGFSLTPNVTHARSRGTVRLRS 392
Query: 73 TDPLWGPPLIFPKFFT--KKPDLDVFVAGMKLGASIVQTEAMQKIHARLVDVSPPQCVFY 130
D P++ P++FT + D+ V VAG++ I AM + R ++SP
Sbjct: 393 RD-FRDKPMVDPRYFTDPEGHDMRVMVAGIRKAREIAAQPAMAEWTGR--ELSPGVEAQT 449
Query: 131 KFGTWDYWACIAMQFTGTIYHPVGTCKMGPKDDPGSVVDARLRVHGVENLRVVDASIMPK 190
DY + T+YHPVGT +MG +D S +D LRV GV LRV DAS+MP+
Sbjct: 450 DEELQDY----IRKTHNTVYHPVGTVRMGAVEDEMSPLDPELRVKGVTGLRVADASVMPE 505
Query: 191 IVRGNTNAPTIMIAEKAADMIK 212
V N N +MI E+ AD+I+
Sbjct: 506 HVTVNPNITVMMIGERCADLIR 527
>pdb|3NNE|A Chain A, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|B Chain B, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|C Chain C, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|D Chain D, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|E Chain E, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|F Chain F, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|G Chain G, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|H Chain H, Crystal Structure Of Choline Oxidase S101a Mutant
Length = 546
Score = 95.1 bits (235), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 65/202 (32%), Positives = 101/202 (50%), Gaps = 17/202 (8%)
Query: 13 DSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPILLKPKSRGYIQLNA 72
D LD PD+ H+ + P + ++ +G ++ P + +SRG ++L +
Sbjct: 341 DGLDRPDLMMHYGSV--------PFDMNTLRHGYPTTENGFSLTPNVTHARSRGTVRLRS 392
Query: 73 TDPLWGPPLIFPKFFT--KKPDLDVFVAGMKLGASIVQTEAMQKIHARLVDVSPPQCVFY 130
D P++ P++FT + D+ V VAG++ I AM + R ++SP
Sbjct: 393 RD-FRDKPMVDPRYFTDPEGHDMRVMVAGIRKAREIAAQPAMAEWTGR--ELSPGVEAQT 449
Query: 131 KFGTWDYWACIAMQFTGTIYHPVGTCKMGPKDDPGSVVDARLRVHGVENLRVVDASIMPK 190
DY + T+YHPVGT +MG +D S +D LRV GV LRV DAS+MP+
Sbjct: 450 DEELQDY----IRKTHNTVYHPVGTVRMGAVEDEMSPLDPELRVKGVTGLRVADASVMPE 505
Query: 191 IVRGNTNAPTIMIAEKAADMIK 212
V N N +MI E+ AD+I+
Sbjct: 506 HVTVNPNITVMMIGERCADLIR 527
>pdb|3LJP|A Chain A, Crystal Structure Of Choline Oxidase V464a Mutant
pdb|3LJP|B Chain B, Crystal Structure Of Choline Oxidase V464a Mutant
Length = 546
Score = 94.0 bits (232), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 65/202 (32%), Positives = 100/202 (49%), Gaps = 17/202 (8%)
Query: 13 DSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPILLKPKSRGYIQLNA 72
D LD PD+ H+ + P + ++ +G ++ P + +SRG ++L +
Sbjct: 341 DGLDRPDLMMHYGSV--------PFDMNTLRHGYPTTENGFSLTPNVTHARSRGTVRLRS 392
Query: 73 TDPLWGPPLIFPKFFT--KKPDLDVFVAGMKLGASIVQTEAMQKIHARLVDVSPPQCVFY 130
D P++ P++FT + D+ V VAG++ I AM + R ++SP
Sbjct: 393 RD-FRDKPMVDPRYFTDPEGHDMRVMVAGIRKAREIAAQPAMAEWTGR--ELSPGVEAQT 449
Query: 131 KFGTWDYWACIAMQFTGTIYHPVGTCKMGPKDDPGSVVDARLRVHGVENLRVVDASIMPK 190
DY + T YHPVGT +MG +D S +D LRV GV LRV DAS+MP+
Sbjct: 450 DEELQDY----IRKTHNTAYHPVGTVRMGAVEDEMSPLDPELRVKGVTGLRVADASVMPE 505
Query: 191 IVRGNTNAPTIMIAEKAADMIK 212
V N N +MI E+ AD+I+
Sbjct: 506 HVTVNPNITVMMIGERCADLIR 527
>pdb|3FIM|B Chain B, Crystal Structure Of Aryl-Alcohol-Oxidase From Pleurotus
Eryingii
Length = 566
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 81/167 (48%), Gaps = 16/167 (9%)
Query: 53 ITVRPILLKPKSRGYIQLNATDPLWGPPLIFPKFFTKKPDLDVFVAGMKLGASIVQTEA- 111
++V L+ P +RG I+L ++P + PLI P++ + + D+ + +K + +A
Sbjct: 410 MSVTNALISPVARGDIKLATSNP-FDKPLINPQYLSTEFDIFTMIQAVKSNLRFLSGQAW 468
Query: 112 ----MQKIHARLVDVSPPQCVFYKFGTWDYWACIAMQFTGTIYHPVGTCKMGPKDDPGSV 167
++ RL D + + TI+HPVGT M P+ V
Sbjct: 469 ADFVIRPFDPRLRDPTDDAAI----------ESYIRDNANTIFHPVGTASMSPRGASWGV 518
Query: 168 VDARLRVHGVENLRVVDASIMPKIVRGNTNAPTIMIAEKAADMIKED 214
VD L+V GV+ LR+VD SI+P +T P ++ ++ AD+IK D
Sbjct: 519 VDPDLKVKGVDGLRIVDGSILPFAPNAHTQGPIYLVGKQGADLIKAD 565
>pdb|1CF3|A Chain A, Glucose Oxidase From Apergillus Niger
pdb|1GAL|A Chain A, Crystal Structure Of Glucose Oxidase From Aspergillus
Niger: Refined At 2.3 Angstroms Resolution
pdb|3QVP|A Chain A, Crystal Structure Of Glucose Oxidase For Space Group C2221
At 1.2 A Resolution
pdb|3QVR|A Chain A, Crystal Structure Of Glucose Oxidase For Space Group P3121
At 1.3 A Resolution
Length = 583
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/186 (32%), Positives = 83/186 (44%), Gaps = 6/186 (3%)
Query: 30 RDWITNPVNASSTNMSPFAYYDGITVRPILLKPKSRGYIQLNATDPLWGPPLIFPKFFTK 89
RDWI N A S A V +L P +RGY+ + DP P++F
Sbjct: 400 RDWIVNHNVAYSELFLDTAGVASFDVWDLL--PFTRGYVHILDKDPYLHHFAYDPQYFLN 457
Query: 90 KPDLDVFVAGMKLGASIVQTEAMQKIHARLVDVSPPQCVFYKFGTWDYWACIAMQFTGTI 149
+ DL A +L +I + AMQ A + P + Y + I F
Sbjct: 458 ELDLLGQAAATQLARNISNSGAMQTYFAG--ETIPGDNLAYDADLSAWTEYIPYHFRPN- 514
Query: 150 YHPVGTCKMGPKDDPGSVVDARLRVHGVENLRVVDASIMPKIVRGNTNAPTIMIAEKAAD 209
YH VGTC M PK+ G VVD RV+GV+ LRV+D SI P + + +A K +D
Sbjct: 515 YHGVGTCSMMPKE-MGGVVDNAARVYGVQGLRVIDGSIPPTQMSSHVMTVFYAMALKISD 573
Query: 210 MIKEDW 215
I ED+
Sbjct: 574 AILEDY 579
>pdb|3T37|A Chain A, Crystal Structure Of Pyridoxine 4-Oxidase From Mesorbium
Loti
Length = 526
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 77/165 (46%), Gaps = 18/165 (10%)
Query: 45 SPFAYYDGITVRPILLKPKSRGYIQLNATDPLWGPPLIF-PKFFTKKPDLDVFVAGMKLG 103
S ++ GIT P SRG ++++ P G LI P + D + F ++
Sbjct: 370 SAYSLLFGIT------HPTSRGSVRISG--PELGDRLIIDPAYLQTGRDRERFRRALEAS 421
Query: 104 ASIVQTEAMQKIHARLVDVSPPQCVFYKFGTWDYWACIAMQFTGTIYHPVGTCKMGPKDD 163
+I + + R + P D+ A + T +HP GTC+MG D
Sbjct: 422 RTIGHRDELAGWRERELLPGTPNSAAEMD---DFIARSVI----THHHPCGTCRMG--KD 472
Query: 164 PGSVVDARLRVHGVENLRVVDASIMPKIVRGNTNAPTIMIAEKAA 208
P +VVDA LR+ ++NL VVDASIMP + G +A + IAE A
Sbjct: 473 PDAVVDANLRLKALDNLFVVDASIMPNLTAGPIHAAVLAIAETFA 517
>pdb|1GPE|A Chain A, Glucose Oxidase From Penicillium Amagasakiense
pdb|1GPE|B Chain B, Glucose Oxidase From Penicillium Amagasakiense
Length = 587
Score = 61.2 bits (147), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 72/156 (46%), Gaps = 4/156 (2%)
Query: 60 LKPKSRGYIQLNATDPLWGPPLIFPKFFTKKPDLDVFVAGMKLGASIVQTEAMQKIHARL 119
L P +RG + + ++DP PKFF + DL A KL + AM++ A
Sbjct: 432 LIPFTRGSVHILSSDPYLWQFANDPKFFLNEFDLLGQAAASKLARDLTSQGAMKEYFA-- 489
Query: 120 VDVSPPQCVFYKFGTWDYWACIAMQFTGTIYHPVGTCKMGPKDDPGSVVDARLRVHGVEN 179
+ P + T W+ +Q +H V +C M ++ G VVDA +V+G +
Sbjct: 490 -GETLPGYNLVQNATLSQWSDYVLQNFRPNWHAVSSCSMMSRE-LGGVVDATAKVYGTQG 547
Query: 180 LRVVDASIMPKIVRGNTNAPTIMIAEKAADMIKEDW 215
LRV+D SI P V + +A K AD I +D+
Sbjct: 548 LRVIDGSIPPTQVSSHVMTIFYGMALKVADAILDDY 583
>pdb|3Q9T|A Chain A, Crystal Structure Analysis Of Formate Oxidase
pdb|3Q9T|B Chain B, Crystal Structure Analysis Of Formate Oxidase
pdb|3Q9T|C Chain C, Crystal Structure Analysis Of Formate Oxidase
Length = 577
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 78/166 (46%), Gaps = 10/166 (6%)
Query: 51 DGITVRPILLKPKSR-GYIQLNATDPLWGPPLIFPKFFTKKPDLDVFVAGMKLGASIV-Q 108
D +TV L++P S G + LN+ DP P + FF D+ G++ ++ +
Sbjct: 415 DHLTVVVDLVRPISDPGEVTLNSADPFQQPNINL-NFFANDLDIIAMREGIRFSYDLLFK 473
Query: 109 TEAMQKIHARLVDVSPPQCVFYKFGTWDYWACIAMQFTGTIYHPVGTCKMGPKDDPGSVV 168
E + LV+ P + + A + T +HP GT ++ D G VV
Sbjct: 474 GEGFKD----LVESEYPWEMPLDSDKEMHRAV--LDRCQTAFHPTGTARLSKNIDQG-VV 526
Query: 169 DARLRVHGVENLRVVDASIMPKIVRGNTNAPTIMIAEKAADMIKED 214
D +L+VHG++ LRV DAS++P I + EK ADMIK +
Sbjct: 527 DPKLKVHGIKKLRVADASVIPIIPDCRIQNSVYAVGEKCADMIKAE 572
>pdb|1NAA|A Chain A, Cellobiose Dehydrogenase Flavoprotein Fragment In Complex
With Cellobionolactam
pdb|1NAA|B Chain B, Cellobiose Dehydrogenase Flavoprotein Fragment In Complex
With Cellobionolactam
Length = 541
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 28/46 (60%)
Query: 166 SVVDARLRVHGVENLRVVDASIMPKIVRGNTNAPTIMIAEKAADMI 211
+VVD+ ++V G NL +VDA I+P + GN + AE+AA I
Sbjct: 489 AVVDSNVKVFGTNNLFIVDAGIIPHLPTGNPQGTLMSAAEQAAAKI 534
>pdb|1KDG|A Chain A, Crystal Structure Of The Flavin Domain Of Cellobiose
Dehydrogenase
pdb|1KDG|B Chain B, Crystal Structure Of The Flavin Domain Of Cellobiose
Dehydrogenase
Length = 546
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 28/46 (60%)
Query: 166 SVVDARLRVHGVENLRVVDASIMPKIVRGNTNAPTIMIAEKAADMI 211
+VVD+ ++V G NL +VDA I+P + GN + AE+AA I
Sbjct: 494 AVVDSNVKVFGTNNLFIVDAGIIPHLPTGNPQGTLMSAAEQAAAKI 539
>pdb|1B8S|A Chain A, Cholesterol Oxidase From Streptomyces Glu361gln Mutant
Length = 504
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 9/67 (13%)
Query: 150 YHPVGTCKMG-PKDDPGSVVDARLRVHGVENLRVVDASIMPKIVRGNTNAPTIMIAEKAA 208
YHP+G C +G DD G RV G +NL V D S++P V N +AE+
Sbjct: 441 YHPLGGCVLGKATDDYG-------RVAGYKNLYVTDGSLIPGSVGVNPFVTITALAERNV 493
Query: 209 D-MIKED 214
+ +IK+D
Sbjct: 494 ERIIKQD 500
>pdb|1B4V|A Chain A, Cholesterol Oxidase From Streptomyces
pdb|1MXT|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase
(Streptomyces Sp. Sa-Coo)
pdb|1N1P|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase @ Ph
7.4 (Streptomyces Sp. Sa-Coo)
pdb|1N4U|A Chain A, Cholesterol Oxidase From Streptomyces @ Ph 4.5
(Streptomyces Sp. Sa- Coo)
pdb|1N4V|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase @ph 5.8
(Streptomyces Sp. Sa-Coo)
pdb|1N4W|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase @ Ph
7.3 (Streptomyces Sp. Sa-Coo)
pdb|2GEW|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase @ Ph
9.0 (Streptomyces Sp. Sa-Coo)
Length = 504
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 9/67 (13%)
Query: 150 YHPVGTCKMG-PKDDPGSVVDARLRVHGVENLRVVDASIMPKIVRGNTNAPTIMIAEKAA 208
YHP+G C +G DD G RV G +NL V D S++P V N +AE+
Sbjct: 441 YHPLGGCVLGKATDDYG-------RVAGYKNLYVTDGSLIPGSVGVNPFVTITALAERNV 493
Query: 209 D-MIKED 214
+ +IK+D
Sbjct: 494 ERIIKQD 500
>pdb|3CNJ|A Chain A, Cholesterol Oxidase From Streptomyces Sp. F359w Mutant
(0.95a)
Length = 499
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 9/67 (13%)
Query: 150 YHPVGTCKMG-PKDDPGSVVDARLRVHGVENLRVVDASIMPKIVRGNTNAPTIMIAEKAA 208
YHP+G C +G DD G RV G +NL V D S++P V N +AE+
Sbjct: 439 YHPLGGCVLGKATDDYG-------RVAGYKNLYVTDGSLIPGSVGVNPFVTITALAERNV 491
Query: 209 D-MIKED 214
+ +IK+D
Sbjct: 492 ERIIKQD 498
>pdb|3RED|A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|B Chain B, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|C Chain C, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|D Chain D, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|E Chain E, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|F Chain F, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|G Chain G, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|H Chain H, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|I Chain I, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|J Chain J, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|K Chain K, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|L Chain L, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
Length = 521
Score = 35.8 bits (81), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 56/145 (38%), Gaps = 35/145 (24%)
Query: 62 PKSRGYIQLNATDPLWGPPLIFPKFFTKKPDLDVFVAGMKLGASIVQTEAMQKIHAR--- 118
P S G I LN+ + P + +++ DL V+GMK ++ ++A++
Sbjct: 366 PLSYGSITLNSDSDVRVAPNVKFNYYSNSTDLAHCVSGMKKIGELLSSDALKPYKVEDLP 425
Query: 119 ------LVDVSPPQC--------VFYKFGTWDYWACIAMQFTGTIYHPVGTCKMGPKDDP 164
++ + P+ F + YW YH G C +G
Sbjct: 426 GIDGFDILGIPLPENQTDDAAFETFCREAVASYWH----------YH--GGCLVG----- 468
Query: 165 GSVVDARLRVHGVENLRVVDASIMP 189
V+D RV G+ LRVVD S P
Sbjct: 469 -EVLDGDFRVTGINALRVVDGSTFP 492
>pdb|3GYI|A Chain A, Cholesterol Oxidase From Streptomyces Sp. N485d Mutant
(1.0a)
Length = 504
Score = 35.4 bits (80), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 9/67 (13%)
Query: 150 YHPVGTCKMG-PKDDPGSVVDARLRVHGVENLRVVDASIMPKIVRGNTNAPTIMIAEKAA 208
YHP+G C +G DD G RV G +NL V D S++P V + +AE+
Sbjct: 441 YHPLGGCVLGKATDDYG-------RVAGYKNLYVTDGSLIPGSVGVDPFVTITALAERNV 493
Query: 209 D-MIKED 214
+ +IK+D
Sbjct: 494 ERIIKQD 500
>pdb|1JU2|A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond
pdb|1JU2|B Chain B, Crystal Structure Of The Hydroxynitrile Lyase From Almond
Length = 536
Score = 35.0 bits (79), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 57/136 (41%), Gaps = 17/136 (12%)
Query: 62 PKSRGYIQLNATDPLWGPPLIFPKFFTKKPDLDVFVAGMKLGASIVQTEAMQKIHARLVD 121
P S G + L ++ + P + +++ DL V+GMK ++ T+A++ V+
Sbjct: 365 PLSYGSLTLKSSSNVRVSPNVKFNYYSNLTDLSHCVSGMKKIGELLSTDALKPYK---VE 421
Query: 122 VSPPQCVFYKFG-------TWDY-WACIAMQFTGTIYHPVGTCKMGPKDDPGSVVDARLR 173
P F G T D + + + +H G C +G V+D R
Sbjct: 422 DLPGVEGFNILGIPLPKDQTDDAAFETFCRESVASYWHYHGGCLVG------KVLDGDFR 475
Query: 174 VHGVENLRVVDASIMP 189
V G+ LRVVD S P
Sbjct: 476 VTGINALRVVDGSTFP 491
>pdb|3GDN|A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde
pdb|3GDN|B Chain B, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde
pdb|3GDP|A Chain A, Hydroxynitrile Lyase From Almond, Monoclinic Crystal Form
pdb|3GDP|B Chain B, Hydroxynitrile Lyase From Almond, Monoclinic Crystal Form
Length = 521
Score = 35.0 bits (79), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 57/136 (41%), Gaps = 17/136 (12%)
Query: 62 PKSRGYIQLNATDPLWGPPLIFPKFFTKKPDLDVFVAGMKLGASIVQTEAMQKIHARLVD 121
P S G + L ++ + P + +++ DL V+GMK ++ T+A++ V+
Sbjct: 365 PLSYGSLTLKSSSNVRVSPNVKFNYYSNLTDLSHCVSGMKKIGELLSTDALKPYK---VE 421
Query: 122 VSPPQCVFYKFG-------TWDY-WACIAMQFTGTIYHPVGTCKMGPKDDPGSVVDARLR 173
P F G T D + + + +H G C +G V+D R
Sbjct: 422 DLPGVEGFNILGIPLPKDQTDDAAFETFCRESVASYWHYHGGCLVG------KVLDGDFR 475
Query: 174 VHGVENLRVVDASIMP 189
V G+ LRVVD S P
Sbjct: 476 VTGINALRVVDGSTFP 491
>pdb|1CBO|A Chain A, Cholesterol Oxidase From Streptomyces His447asn Mutant
Length = 504
Score = 35.0 bits (79), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 9/67 (13%)
Query: 150 YHPVGTCKMG-PKDDPGSVVDARLRVHGVENLRVVDASIMPKIVRGNTNAPTIMIAEKAA 208
Y+P+G C +G DD G RV G +NL V D S++P V N +AE+
Sbjct: 441 YNPLGGCVLGKATDDYG-------RVAGYKNLYVTDGSLIPGSVGVNPFVTITALAERNV 493
Query: 209 D-MIKED 214
+ +IK+D
Sbjct: 494 ERIIKQD 500
>pdb|3B3R|A Chain A, Crystal Structure Of Streptomyces Cholesterol Oxidase
H447qE361Q Mutant Bound To Glycerol (0.98a)
Length = 506
Score = 34.7 bits (78), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 9/67 (13%)
Query: 150 YHPVGTCKMG-PKDDPGSVVDARLRVHGVENLRVVDASIMPKIVRGNTNAPTIMIAEKAA 208
Y P+G C +G DD G RV G +NL V D S++P V N +AE+
Sbjct: 443 YQPLGGCVLGKATDDYG-------RVAGYKNLYVTDGSLIPGSVGVNPFVTITALAERNV 495
Query: 209 D-MIKED 214
+ +IK+D
Sbjct: 496 ERIIKQD 502
>pdb|1CC2|A Chain A, Cholesterol Oxidase From Streptomyces His447gln Mutant
Length = 504
Score = 34.7 bits (78), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 9/67 (13%)
Query: 150 YHPVGTCKMG-PKDDPGSVVDARLRVHGVENLRVVDASIMPKIVRGNTNAPTIMIAEKAA 208
Y P+G C +G DD G RV G +NL V D S++P V N +AE+
Sbjct: 441 YQPLGGCVLGKATDDYG-------RVAGYKNLYVTDGSLIPGSVGVNPFVTITALAERNV 493
Query: 209 D-MIKED 214
+ +IK+D
Sbjct: 494 ERIIKQD 500
>pdb|3B6D|A Chain A, Crystal Structure Of Streptomyces Cholesterol Oxidase
H447qE361Q Mutant (1.2a)
Length = 504
Score = 34.7 bits (78), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 9/67 (13%)
Query: 150 YHPVGTCKMG-PKDDPGSVVDARLRVHGVENLRVVDASIMPKIVRGNTNAPTIMIAEKAA 208
Y P+G C +G DD G RV G +NL V D S++P V N +AE+
Sbjct: 441 YQPLGGCVLGKATDDYG-------RVAGYKNLYVTDGSLIPGSVGVNPFVTITALAERNV 493
Query: 209 D-MIKED 214
+ +IK+D
Sbjct: 494 ERIIKQD 500
>pdb|1IJH|A Chain A, Cholesterol Oxidase From Streptomyces Asn485leu Mutant
pdb|3GYJ|A Chain A, Cholesterol Oxidase From Streptomyces Sp. N485l Mutant
(0.92a)
Length = 504
Score = 33.9 bits (76), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 8/44 (18%)
Query: 150 YHPVGTCKMG-PKDDPGSVVDARLRVHGVENLRVVDASIMPKIV 192
YHP+G C +G DD G RV G +NL V D S++P V
Sbjct: 441 YHPLGGCVLGKATDDYG-------RVAGYKNLYVTDGSLIPGSV 477
>pdb|3K4B|A Chain A, Pyranose 2-Oxidase T169s Mutant
pdb|3LSK|A Chain A, Pyranose 2-Oxidase T169s Acetate Complex
pdb|3LSK|B Chain B, Pyranose 2-Oxidase T169s Acetate Complex
pdb|3LSK|C Chain C, Pyranose 2-Oxidase T169s Acetate Complex
pdb|3LSK|D Chain D, Pyranose 2-Oxidase T169s Acetate Complex
Length = 623
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Query: 147 GTIYHPVGTCKMG--PKDDPGSVVDARLRVHGVENLRVVDASIMPKIVRGNTNAPTIMIA 204
G + H GT +MG K+D V+ RV G +NL + +P N + +A
Sbjct: 544 GLVLHLGGTHRMGFDEKED-NCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLA 602
Query: 205 EKAADMIKEDW 215
K+ + IK+++
Sbjct: 603 IKSCEYIKQNF 613
>pdb|3K4J|A Chain A, Pyranose 2-Oxidase H450q Mutant
Length = 623
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Query: 147 GTIYHPVGTCKMG--PKDDPGSVVDARLRVHGVENLRVVDASIMPKIVRGNTNAPTIMIA 204
G + H GT +MG K+D V+ RV G +NL + +P N + +A
Sbjct: 544 GLVLHLGGTHRMGFDEKED-NCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLA 602
Query: 205 EKAADMIKEDW 215
K+ + IK+++
Sbjct: 603 IKSCEYIKQNF 613
>pdb|3K4C|A Chain A, Pyranose 2-Oxidase H167aT169G MUTANT
pdb|3K4C|B Chain B, Pyranose 2-Oxidase H167aT169G MUTANT
pdb|3K4C|C Chain C, Pyranose 2-Oxidase H167aT169G MUTANT
pdb|3K4C|D Chain D, Pyranose 2-Oxidase H167aT169G MUTANT
Length = 623
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Query: 147 GTIYHPVGTCKMG--PKDDPGSVVDARLRVHGVENLRVVDASIMPKIVRGNTNAPTIMIA 204
G + H GT +MG K+D V+ RV G +NL + +P N + +A
Sbjct: 544 GLVLHLGGTHRMGFDEKED-NCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLA 602
Query: 205 EKAADMIKEDW 215
K+ + IK+++
Sbjct: 603 IKSCEYIKQNF 613
>pdb|2IGN|A Chain A, Crystal Structure Of Recombinant Pyranose 2-Oxidase H167a
Mutant
pdb|2IGN|B Chain B, Crystal Structure Of Recombinant Pyranose 2-Oxidase H167a
Mutant
pdb|2IGN|D Chain D, Crystal Structure Of Recombinant Pyranose 2-Oxidase H167a
Mutant
pdb|2IGN|C Chain C, Crystal Structure Of Recombinant Pyranose 2-Oxidase H167a
Mutant
pdb|2IGN|E Chain E, Crystal Structure Of Recombinant Pyranose 2-Oxidase H167a
Mutant
pdb|2IGN|F Chain F, Crystal Structure Of Recombinant Pyranose 2-Oxidase H167a
Mutant
pdb|2IGN|H Chain H, Crystal Structure Of Recombinant Pyranose 2-Oxidase H167a
Mutant
pdb|2IGN|G Chain G, Crystal Structure Of Recombinant Pyranose 2-Oxidase H167a
Mutant
pdb|2IGO|A Chain A, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant With
2- Fluoro-2-Deoxy-D-Glucose
pdb|2IGO|B Chain B, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant With
2- Fluoro-2-Deoxy-D-Glucose
pdb|2IGO|D Chain D, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant With
2- Fluoro-2-Deoxy-D-Glucose
pdb|2IGO|C Chain C, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant With
2- Fluoro-2-Deoxy-D-Glucose
pdb|2IGO|E Chain E, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant With
2- Fluoro-2-Deoxy-D-Glucose
pdb|2IGO|F Chain F, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant With
2- Fluoro-2-Deoxy-D-Glucose
pdb|2IGO|H Chain H, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant With
2- Fluoro-2-Deoxy-D-Glucose
pdb|2IGO|G Chain G, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant With
2- Fluoro-2-Deoxy-D-Glucose
pdb|3LSM|A Chain A, Pyranose 2-Oxidase H167a Mutant With Flavin N(5) Sulfite
Adduct
pdb|3LSM|B Chain B, Pyranose 2-Oxidase H167a Mutant With Flavin N(5) Sulfite
Adduct
pdb|3PL8|A Chain A, Pyranose 2-Oxidase H167a Complex With
3-Deoxy-3-Fluoro-Beta-D-Glucose
Length = 623
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Query: 147 GTIYHPVGTCKMG--PKDDPGSVVDARLRVHGVENLRVVDASIMPKIVRGNTNAPTIMIA 204
G + H GT +MG K+D V+ RV G +NL + +P N + +A
Sbjct: 544 GLVLHLGGTHRMGFDEKED-NCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLA 602
Query: 205 EKAADMIKEDW 215
K+ + IK+++
Sbjct: 603 IKSCEYIKQNF 613
>pdb|1TT0|A Chain A, Crystal Structure Of Pyranose 2-Oxidase
pdb|1TT0|B Chain B, Crystal Structure Of Pyranose 2-Oxidase
pdb|1TT0|C Chain C, Crystal Structure Of Pyranose 2-Oxidase
pdb|1TT0|D Chain D, Crystal Structure Of Pyranose 2-Oxidase
pdb|2IGK|A Chain A, Crystal Structure Of Recombinant Pyranose 2-Oxidase
pdb|2IGK|B Chain B, Crystal Structure Of Recombinant Pyranose 2-Oxidase
pdb|2IGK|C Chain C, Crystal Structure Of Recombinant Pyranose 2-Oxidase
pdb|2IGK|D Chain D, Crystal Structure Of Recombinant Pyranose 2-Oxidase
pdb|2IGK|E Chain E, Crystal Structure Of Recombinant Pyranose 2-Oxidase
pdb|2IGK|F Chain F, Crystal Structure Of Recombinant Pyranose 2-Oxidase
pdb|2IGK|G Chain G, Crystal Structure Of Recombinant Pyranose 2-Oxidase
pdb|2IGK|H Chain H, Crystal Structure Of Recombinant Pyranose 2-Oxidase
Length = 623
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Query: 147 GTIYHPVGTCKMG--PKDDPGSVVDARLRVHGVENLRVVDASIMPKIVRGNTNAPTIMIA 204
G + H GT +MG K+D V+ RV G +NL + +P N + +A
Sbjct: 544 GLVLHLGGTHRMGFDEKED-NCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLA 602
Query: 205 EKAADMIKEDW 215
K+ + IK+++
Sbjct: 603 IKSCEYIKQNF 613
>pdb|3K4M|A Chain A, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
pdb|3K4M|B Chain B, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
pdb|3K4M|C Chain C, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
pdb|3K4M|D Chain D, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
pdb|3K4M|E Chain E, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
pdb|3K4M|F Chain F, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
pdb|3K4M|G Chain G, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
pdb|3K4M|H Chain H, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
Length = 623
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Query: 147 GTIYHPVGTCKMG--PKDDPGSVVDARLRVHGVENLRVVDASIMPKIVRGNTNAPTIMIA 204
G + H GT +MG K+D V+ RV G +NL + +P N + +A
Sbjct: 544 GLVLHLGGTHRMGFDEKED-NCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLA 602
Query: 205 EKAADMIKEDW 215
K+ + IK+++
Sbjct: 603 IKSCEYIKQNF 613
>pdb|3BG7|A Chain A, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
pdb|3BG7|B Chain B, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
pdb|3BG7|C Chain C, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
pdb|3BG7|D Chain D, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
pdb|3BG7|E Chain E, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
pdb|3BG7|F Chain F, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
pdb|3BG7|G Chain G, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
pdb|3BG7|H Chain H, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
Length = 623
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Query: 147 GTIYHPVGTCKMG--PKDDPGSVVDARLRVHGVENLRVVDASIMPKIVRGNTNAPTIMIA 204
G + H GT +MG K+D V+ RV G +NL + +P N + +A
Sbjct: 544 GLVLHLGGTHRMGFDEKED-NCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLA 602
Query: 205 EKAADMIKEDW 215
K+ + IK+++
Sbjct: 603 IKSCEYIKQNF 613
>pdb|3LSH|A Chain A, Pyranose 2-Oxidase T169a, Monoclinic
pdb|3LSH|B Chain B, Pyranose 2-Oxidase T169a, Monoclinic
pdb|3LSH|C Chain C, Pyranose 2-Oxidase T169a, Monoclinic
pdb|3LSH|D Chain D, Pyranose 2-Oxidase T169a, Monoclinic
pdb|3LSI|A Chain A, Pyranose 2-Oxidase T169a, Tetragonal
pdb|3LSI|B Chain B, Pyranose 2-Oxidase T169a, Tetragonal
Length = 623
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Query: 147 GTIYHPVGTCKMG--PKDDPGSVVDARLRVHGVENLRVVDASIMPKIVRGNTNAPTIMIA 204
G + H GT +MG K+D V+ RV G +NL + +P N + +A
Sbjct: 544 GLVLHLGGTHRMGFDEKED-NCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLA 602
Query: 205 EKAADMIKEDW 215
K+ + IK+++
Sbjct: 603 IKSCEYIKQNF 613
>pdb|3BG6|A Chain A, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
pdb|3BG6|B Chain B, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
pdb|3BG6|C Chain C, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
pdb|3BG6|D Chain D, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
pdb|3BG6|E Chain E, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
pdb|3BG6|F Chain F, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
pdb|3BG6|G Chain G, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
pdb|3BG6|H Chain H, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
Length = 623
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Query: 147 GTIYHPVGTCKMG--PKDDPGSVVDARLRVHGVENLRVVDASIMPKIVRGNTNAPTIMIA 204
G + H GT +MG K+D V+ RV G +NL + +P N + +A
Sbjct: 544 GLVLHLGGTHRMGFDEKED-NCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLA 602
Query: 205 EKAADMIKEDW 215
K+ + IK+++
Sbjct: 603 IKSCEYIKQNF 613
>pdb|3K4K|A Chain A, Pyranose 2-Oxidase F454n Mutant
pdb|3K4L|A Chain A, Pyranose 2-Oxidase F454n Mutant In Complex With 2fg
pdb|3K4L|B Chain B, Pyranose 2-Oxidase F454n Mutant In Complex With 2fg
Length = 623
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Query: 147 GTIYHPVGTCKMG--PKDDPGSVVDARLRVHGVENLRVVDASIMPKIVRGNTNAPTIMIA 204
G + H GT +MG K+D V+ RV G +NL + +P N + +A
Sbjct: 544 GLVLHLGGTHRMGFDEKED-NCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLA 602
Query: 205 EKAADMIKEDW 215
K+ + IK+++
Sbjct: 603 IKSCEYIKQNF 613
>pdb|3BLY|A Chain A, Pyranose 2-Oxidase From Trametes Multicolor, E542kL537W
Length = 623
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Query: 147 GTIYHPVGTCKMG--PKDDPGSVVDARLRVHGVENLRVVDASIMPKIVRGNTNAPTIMIA 204
G + H GT +MG K+D V+ RV G +NL + +P N + +A
Sbjct: 544 GLVLHLGGTHRMGFDEKED-NCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLA 602
Query: 205 EKAADMIKEDW 215
K+ + IK+++
Sbjct: 603 IKSCEYIKQNF 613
>pdb|2F6C|A Chain A, Reaction Geometry And Thermostability Of Pyranose
2-Oxidase From The White-Rot Fungus Peniophora Sp.,
Thermostability Mutant E542k
Length = 595
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Query: 147 GTIYHPVGTCKMG--PKDDPGSVVDARLRVHGVENLRVVDASIMPKIVRGNTNAPTIMIA 204
G + H GT +MG K+D V+ RV G +NL + +P N + +A
Sbjct: 516 GLVLHLGGTHRMGFDEKED-NCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLA 574
Query: 205 EKAADMIKEDW 215
K+ + IK+++
Sbjct: 575 IKSCEYIKQNF 585
>pdb|3K4N|A Chain A, Pyranose 2-Oxidase F454aS455AY456A MUTANT
pdb|3K4N|B Chain B, Pyranose 2-Oxidase F454aS455AY456A MUTANT
Length = 623
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Query: 147 GTIYHPVGTCKMG--PKDDPGSVVDARLRVHGVENLRVVDASIMPKIVRGNTNAPTIMIA 204
G + H GT +MG K+D V+ RV G +NL + +P N + +A
Sbjct: 544 GLVLHLGGTHRMGFDEKED-NCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLA 602
Query: 205 EKAADMIKEDW 215
K+ + IK+++
Sbjct: 603 IKSCEYIKQNF 613
>pdb|2F5V|A Chain A, Reaction Geometry And Thermostability Mutant Of Pyranose
2-Oxidase From The White-Rot Fungus Peniophora Sp
Length = 595
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Query: 147 GTIYHPVGTCKMG--PKDDPGSVVDARLRVHGVENLRVVDASIMPKIVRGNTNAPTIMIA 204
G + H GT +MG K+D V+ RV G +NL + +P N + +A
Sbjct: 516 GLVLHLGGTHRMGFDEKED-NCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLA 574
Query: 205 EKAADMIKEDW 215
K+ + IK+++
Sbjct: 575 IKSCEYIKQNF 585
>pdb|3TRD|A Chain A, Structure Of An Alpha-Beta Serine Hydrolase Homologue From
Coxiella Burnetii
Length = 208
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 94 DVFVAGMKLGASIVQTEAMQKIHARLVDVSPPQCVFYK 131
D+++AG GA I A + A+L+ V+PP VFY+
Sbjct: 106 DIWLAGFSFGAYISAKVAYDQKVAQLISVAPP--VFYE 141
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.442
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,899,116
Number of Sequences: 62578
Number of extensions: 266022
Number of successful extensions: 426
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 395
Number of HSP's gapped (non-prelim): 41
length of query: 219
length of database: 14,973,337
effective HSP length: 95
effective length of query: 124
effective length of database: 9,028,427
effective search space: 1119524948
effective search space used: 1119524948
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)