BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8945
(219 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P18172|DHGL_DROPS Glucose dehydrogenase [acceptor] OS=Drosophila pseudoobscura
pseudoobscura GN=Gld PE=3 SV=4
Length = 625
Score = 154 bits (389), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 84/206 (40%), Positives = 111/206 (53%), Gaps = 6/206 (2%)
Query: 10 RLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPILLKPKSRGYIQ 69
R AD ++PD+Q + T V +N S I + P +L PKSRGYI
Sbjct: 409 RWADRPNLPDLQLYFGGYLASCARTGQVGELLSNNS-----RAIQIFPAVLNPKSRGYIT 463
Query: 70 LNATDPLWGPPLIFPKFFTKKPDLDVFVAGMKLGASIVQTEAMQKIHARLVDVSPPQCVF 129
L + DPL PP IF + T + D+ V G+K + QT +++ RL C
Sbjct: 464 LRSADPL-DPPRIFANYLTDERDVKTLVEGIKFAIRLSQTSPLKQYGMRLDKTVVKGCES 522
Query: 130 YKFGTWDYWACIAMQFTGTIYHPVGTCKMGPKDDPGSVVDARLRVHGVENLRVVDASIMP 189
+ F + YW C Q TG H G+CKMGP DP +VV+ LRVHGV LRV+D SIMP
Sbjct: 523 HAFASDAYWECAVRQNTGPENHQAGSCKMGPSHDPMAVVNHELRVHGVRGLRVMDTSIMP 582
Query: 190 KIVRGNTNAPTIMIAEKAADMIKEDW 215
K+ GNT+AP +MIAEK A ++K W
Sbjct: 583 KVTAGNTHAPAVMIAEKGAYLLKRAW 608
>sp|P18173|DHGL_DROME Glucose dehydrogenase [acceptor] OS=Drosophila melanogaster GN=Gld
PE=3 SV=3
Length = 625
Score = 150 bits (379), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 82/206 (39%), Positives = 111/206 (53%), Gaps = 6/206 (2%)
Query: 10 RLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPILLKPKSRGYIQ 69
R ADS + PD+Q + T V +N S I + P +L P+SRG+I
Sbjct: 409 RYADSPERPDLQLYFGGYLASCARTGQVGELLSNNS-----RSIQIFPAVLNPRSRGFIG 463
Query: 70 LNATDPLWGPPLIFPKFFTKKPDLDVFVAGMKLGASIVQTEAMQKIHARLVDVSPPQCVF 129
L + DPL PP I + T + D+ V G+K + QT +++ RL C
Sbjct: 464 LRSADPLE-PPRIVANYLTHEQDVKTLVEGIKFVIRLSQTTPLKQYGMRLDKTVVKGCEA 522
Query: 130 YKFGTWDYWACIAMQFTGTIYHPVGTCKMGPKDDPGSVVDARLRVHGVENLRVVDASIMP 189
+ FG+ YW C Q TG H G+CKMGP DP +VV+ LRVHG+ LRV+D SIMP
Sbjct: 523 HAFGSDAYWECAVRQNTGPENHQAGSCKMGPSHDPMAVVNHELRVHGIRGLRVMDTSIMP 582
Query: 190 KIVRGNTNAPTIMIAEKAADMIKEDW 215
K+ GNT+AP +MIAEK A ++K W
Sbjct: 583 KVSSGNTHAPAVMIAEKGAYLLKRAW 608
>sp|Q00593|ALKJ_PSEOL Alcohol dehydrogenase [acceptor] OS=Pseudomonas oleovorans GN=alkJ
PE=1 SV=1
Length = 558
Score = 133 bits (334), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 85/196 (43%), Positives = 112/196 (57%), Gaps = 20/196 (10%)
Query: 16 DVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPILLKPKSRGYIQLNATDP 75
D P++QFH P ++D + A G T+ L PKSRG I L + +P
Sbjct: 352 DRPNLQFHFLPTYLKD-----------HGRKIAGGYGYTLHICDLLPKSRGRIGLKSANP 400
Query: 76 LWGPPLIFPKFFTKKPDLDVFVAGMKLGASIVQTEAMQKIHARLVDVSPPQCVFYKFGTW 135
L PPLI P + + D+ +AG+K+G +I+Q +M K +V P Q V T
Sbjct: 401 LQ-PPLIDPNYLSDHEDIKTMIAGIKIGRAILQAPSMAKHFKH--EVVPGQAV----KTD 453
Query: 136 DYWACIAMQFTGTIYHPVGTCKMGPKDDPGSVVDARLRVHGVENLRVVDASIMPKIVRGN 195
D + TIYHPVGTC+MG DP SVVD L++ G+ N+RVVDASIMP +V GN
Sbjct: 454 DEIIEDIRRRAETIYHPVGTCRMG--KDPASVVDPCLKIRGLANIRVVDASIMPHLVAGN 511
Query: 196 TNAPTIMIAEKAADMI 211
TNAPTIMIAE AA++I
Sbjct: 512 TNAPTIMIAENAAEII 527
>sp|Q9WWW2|ALKJ_PSEPU Alcohol dehydrogenase [acceptor] OS=Pseudomonas putida GN=alkJ PE=3
SV=1
Length = 552
Score = 124 bits (310), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 80/196 (40%), Positives = 106/196 (54%), Gaps = 20/196 (10%)
Query: 16 DVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPILLKPKSRGYIQLNATDP 75
D P++QFH P ++D + A G T+ L PKSRG I L + +P
Sbjct: 352 DRPNLQFHFLPTYLKD-----------HGRKIAVGYGYTLHICDLLPKSRGRIGLKSANP 400
Query: 76 LWGPPLIFPKFFTKKPDLDVFVAGMKLGASIVQTEAMQKIHARLVDVSPPQCVFYKFGTW 135
+ PLI P + + D+ +AG+K+G +I +M K R + P +
Sbjct: 401 M-DDPLIDPNYLSDPEDIKTMIAGIKIGRAIFDAPSMAKHFKREIVPGPAVT------SD 453
Query: 136 DYWACIAMQFTGTIYHPVGTCKMGPKDDPGSVVDARLRVHGVENLRVVDASIMPKIVRGN 195
D TIYHPVGTC+MG DP SVVD L+V G+ N+RVVDASIMP +V GN
Sbjct: 454 DEIVADIRSRAETIYHPVGTCRMG--KDPASVVDPCLQVRGLRNIRVVDASIMPNLVAGN 511
Query: 196 TNAPTIMIAEKAADMI 211
TNAPTIMIAE AA++I
Sbjct: 512 TNAPTIMIAENAAEII 527
>sp|Q47944|SDH_GLUOY L-sorbose 1-dehydrogenase OS=Gluconobacter oxydans PE=3 SV=1
Length = 531
Score = 114 bits (284), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 75/202 (37%), Positives = 107/202 (52%), Gaps = 20/202 (9%)
Query: 14 SLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPILLKPKSRGYIQLNAT 73
S VPD+QFH A + S GIT+ +L+PKSRG ++L +
Sbjct: 348 SSGVPDLQFH---------FLAEAGAEAGVTSVPKGASGITLNSYVLRPKSRGTVRLRSA 398
Query: 74 DPLWGPPLIFPKFFTKKPDLDVFVAGMKLGASIVQTEAMQKIHARLVDVSPPQCVFY-KF 132
DP P ++ P F DL+ G++L + +++K H R C F K
Sbjct: 399 DPRVNP-MVDPNFLGDPADLETSAEGVRLSYEMFSQPSLEK-HIRKT------CFFSGKQ 450
Query: 133 GTWDYWACIAMQFTGTIYHPVGTCKMGPKDDPGSVVDARLRVHGVENLRVVDASIMPKIV 192
T + A + T YHP TCKMG +DD SVVD RL+VHG+E +R+ D+S+MP ++
Sbjct: 451 PTMQMYRDYAREHGRTSYHPTCTCKMG-RDDM-SVVDPRLKVHGLEGIRICDSSVMPSLL 508
Query: 193 RGNTNAPTIMIAEKAADMIKED 214
NTNA TIMI+E+AAD I+ +
Sbjct: 509 GSNTNAATIMISERAADFIQGN 530
>sp|Q1QXE1|BETA1_CHRSD Choline dehydrogenase OS=Chromohalobacter salexigens (strain DSM
3043 / ATCC BAA-138 / NCIMB 13768) GN=betA PE=3 SV=1
Length = 560
Score = 112 bits (281), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 70/203 (34%), Positives = 101/203 (49%), Gaps = 18/203 (8%)
Query: 10 RLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPILLKPKSRGYIQ 69
R D + P++Q+H P+++ S N G ++ SRG I+
Sbjct: 352 RTNDQEEWPNLQYHFLPIAI-----------SYNGKSAVQAHGFQAHVGSMRSMSRGRIR 400
Query: 70 LNATDPLWGPPLIFPKFFTKKPDLDVFVAGMKLGASIVQTEAMQKIHARLVDVSPPQCVF 129
L + DP P ++F + + D F +++ I++ M + R ++SP V
Sbjct: 401 LTSRDPKAAPSILF-NYMSHDKDWQEFRDAIRITREIIEQPTMDEYRGR--EISPGPNVQ 457
Query: 130 YKFGTWDYWACIAMQFTGTIYHPVGTCKMGPKDDPGSVVDARLRVHGVENLRVVDASIMP 189
++ Q T YHP G+CKMG DD +VVD RVHG+E LRV+DASIMP
Sbjct: 458 SDAELDEF----VRQHAETAYHPAGSCKMGSADDAMAVVDGAGRVHGLEGLRVIDASIMP 513
Query: 190 KIVRGNTNAPTIMIAEKAADMIK 212
I GN NAPTIMIAEK AD ++
Sbjct: 514 VIATGNLNAPTIMIAEKMADKVR 536
>sp|B4SHV9|BETA_STRM5 Choline dehydrogenase OS=Stenotrophomonas maltophilia (strain
R551-3) GN=betA PE=3 SV=1
Length = 560
Score = 112 bits (280), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 72/206 (34%), Positives = 106/206 (51%), Gaps = 18/206 (8%)
Query: 14 SLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPILLKPKSRGYIQLNAT 73
D P++Q+H P+++ +NP+ A S M + ++ SRG I + +
Sbjct: 356 EFDWPNLQYHFLPVAINYNGSNPIKAHSFQMHVGS-----------MRSPSRGRIHVRSK 404
Query: 74 DPLWGPPLIFPKFFTKKPDLDVFVAGMKLGASIVQTEAMQKIHARLVDVSPPQCVFYKFG 133
DP P ++F + + D F A +++ I A+ R ++SP +
Sbjct: 405 DPREHPSILF-NYMSHDQDWREFRAAIRITREIFAQPALAPYSGR--EISPGSAL----Q 457
Query: 134 TWDYWACIAMQFTGTIYHPVGTCKMGPKDDPGSVVDARLRVHGVENLRVVDASIMPKIVR 193
T + T YHP + KMG DDP +VVD + RVHG+E LR+VDASIMP++V
Sbjct: 458 TDAQIDAFVREHAETAYHPSCSNKMGHADDPMAVVDGQGRVHGLEGLRIVDASIMPQVVT 517
Query: 194 GNTNAPTIMIAEKAADMIKEDWILDR 219
GN NAPTIMIAEK AD+I+ L R
Sbjct: 518 GNLNAPTIMIAEKLADVIRGRTPLAR 543
>sp|B2FQ89|BETA_STRMK Choline dehydrogenase OS=Stenotrophomonas maltophilia (strain
K279a) GN=betA PE=3 SV=1
Length = 560
Score = 112 bits (279), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 105/199 (52%), Gaps = 18/199 (9%)
Query: 14 SLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPILLKPKSRGYIQLNAT 73
D P++Q+H P+++ +NP+ A S M + ++ SRG I + +
Sbjct: 356 EFDWPNLQYHFLPVAINYNGSNPIKAHSFQMHVGS-----------MRSPSRGRIHVRSK 404
Query: 74 DPLWGPPLIFPKFFTKKPDLDVFVAGMKLGASIVQTEAMQKIHARLVDVSPPQCVFYKFG 133
DP P ++F + + + D F A +++ I A+ R ++SP +
Sbjct: 405 DPREHPSILF-NYMSHEQDWREFRAAIRITREIFAQPALAPYSGR--EISPGSAL----Q 457
Query: 134 TWDYWACIAMQFTGTIYHPVGTCKMGPKDDPGSVVDARLRVHGVENLRVVDASIMPKIVR 193
T + T YHP + KMG DDP +VVD + RVHG+E LR+VDASIMP++V
Sbjct: 458 TDAQIDAFVREHAETAYHPSCSNKMGHADDPMAVVDGQGRVHGLEGLRIVDASIMPQVVT 517
Query: 194 GNTNAPTIMIAEKAADMIK 212
GN NAPTIM+AEK AD+I+
Sbjct: 518 GNLNAPTIMMAEKLADVIR 536
>sp|P64264|Y1310_MYCBO Uncharacterized GMC-type oxidoreductase Mb1310 OS=Mycobacterium
bovis (strain ATCC BAA-935 / AF2122/97) GN=Mb1310 PE=3
SV=1
Length = 528
Score = 111 bits (278), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 66/180 (36%), Positives = 99/180 (55%), Gaps = 19/180 (10%)
Query: 44 MSPFAYYD---------GITVRPILLKPKSRGYIQLNATDPLWGPPLIFPKFFTKKPDLD 94
+P +YD G+ PIL+ P+SRG I L + DP P+I P++ + +D
Sbjct: 356 FAPAPFYDEALVPPAGHGVVFGPILVAPQSRGQITLRSADP-HAKPVIEPRYLSDLGGVD 414
Query: 95 --VFVAGMKLGASIVQTEAMQKIHARLVDVSPPQCVFYKFGTWDYWACIAMQFTGTIYHP 152
+AG+++ A I Q ++ + + P T + T+YHP
Sbjct: 415 RAAMMAGLRICARIAQARPLRDLLGSIA--RPRNSTELDEATLELALATCSH---TLYHP 469
Query: 153 VGTCKMGPKDDPGSVVDARLRVHGVENLRVVDASIMPKIVRGNTNAPTIMIAEKAADMIK 212
+GTC+MG D SVVD +LRV GV+ LRV DAS+MP VRG+T+AP+++I EKAAD+I+
Sbjct: 470 MGTCRMG--SDEASVVDPQLRVRGVDGLRVADASVMPSTVRGHTHAPSVLIGEKAADLIR 527
>sp|P64263|Y1279_MYCTU Uncharacterized GMC-type oxidoreductase Rv1279/MT1316
OS=Mycobacterium tuberculosis GN=Rv1279 PE=3 SV=1
Length = 528
Score = 111 bits (278), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 66/180 (36%), Positives = 99/180 (55%), Gaps = 19/180 (10%)
Query: 44 MSPFAYYD---------GITVRPILLKPKSRGYIQLNATDPLWGPPLIFPKFFTKKPDLD 94
+P +YD G+ PIL+ P+SRG I L + DP P+I P++ + +D
Sbjct: 356 FAPAPFYDEALVPPAGHGVVFGPILVAPQSRGQITLRSADP-HAKPVIEPRYLSDLGGVD 414
Query: 95 --VFVAGMKLGASIVQTEAMQKIHARLVDVSPPQCVFYKFGTWDYWACIAMQFTGTIYHP 152
+AG+++ A I Q ++ + + P T + T+YHP
Sbjct: 415 RAAMMAGLRICARIAQARPLRDLLGSIA--RPRNSTELDEATLELALATCSH---TLYHP 469
Query: 153 VGTCKMGPKDDPGSVVDARLRVHGVENLRVVDASIMPKIVRGNTNAPTIMIAEKAADMIK 212
+GTC+MG D SVVD +LRV GV+ LRV DAS+MP VRG+T+AP+++I EKAAD+I+
Sbjct: 470 MGTCRMG--SDEASVVDPQLRVRGVDGLRVADASVMPSTVRGHTHAPSVLIGEKAADLIR 527
>sp|Q6UPE0|CHDH_RAT Choline dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Chdh
PE=1 SV=1
Length = 599
Score = 111 bits (277), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 76/195 (38%), Positives = 102/195 (52%), Gaps = 18/195 (9%)
Query: 18 PDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPILLKPKSRGYIQLNATDPLW 77
PDIQFH P V D P T + + G ++ S G+++L +T+P
Sbjct: 401 PDIQFHFLPSQVIDHGRKP-----TQQEAYQVHVGT------MRATSVGWLKLRSTNPQ- 448
Query: 78 GPPLIFPKFFTKKPDLDVFVAGMKLGASIVQTEAMQKIHARLVDVSPPQCVFYKFGTWDY 137
P+I P + + + D++ F +KL I EA + ++ P V +
Sbjct: 449 DHPMINPNYLSTETDVEDFRQCVKLTREIFAQEAFAPFRGK--ELQPGSHVQSDKEIDAF 506
Query: 138 WACIAMQFTGTIYHPVGTCKMGPKDDPGSVVDARLRVHGVENLRVVDASIMPKIVRGNTN 197
A + YHP TCKMG DP +VVD + RV GVENLRV+DASIMP +V GN N
Sbjct: 507 VRAKA----DSAYHPSCTCKMGQPSDPTAVVDQQTRVIGVENLRVIDASIMPSVVSGNLN 562
Query: 198 APTIMIAEKAADMIK 212
APTIMIAEKAAD+IK
Sbjct: 563 APTIMIAEKAADVIK 577
>sp|Q8BJ64|CHDH_MOUSE Choline dehydrogenase, mitochondrial OS=Mus musculus GN=Chdh PE=1
SV=1
Length = 596
Score = 111 bits (277), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 73/195 (37%), Positives = 101/195 (51%), Gaps = 18/195 (9%)
Query: 18 PDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPILLKPKSRGYIQLNATDPLW 77
PDIQFH P V D P T + + G ++ S G+++L + +P
Sbjct: 398 PDIQFHFLPSQVIDHGRKP-----TQQEAYQVHVGT------MRATSVGWLKLRSANPR- 445
Query: 78 GPPLIFPKFFTKKPDLDVFVAGMKLGASIVQTEAMQKIHARLVDVSPPQCVFYKFGTWDY 137
P+I P + + + D++ F ++L I EA+ + ++ P V
Sbjct: 446 DHPVIHPNYLSTETDVEDFRQCVRLSREIFAQEALAPFRGK--ELQPGSHVQSDKEI--- 500
Query: 138 WACIAMQFTGTIYHPVGTCKMGPKDDPGSVVDARLRVHGVENLRVVDASIMPKIVRGNTN 197
+ YHP TCKMG DP +VVDA+ +V GVENLRVVDASIMP +V GN N
Sbjct: 501 -DAFVRAKADSAYHPSCTCKMGRSSDPTAVVDAQTKVIGVENLRVVDASIMPSVVSGNLN 559
Query: 198 APTIMIAEKAADMIK 212
APT+MIAEKAAD+IK
Sbjct: 560 APTVMIAEKAADIIK 574
>sp|Q8NE62|CHDH_HUMAN Choline dehydrogenase, mitochondrial OS=Homo sapiens GN=CHDH PE=2
SV=2
Length = 594
Score = 108 bits (270), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 75/195 (38%), Positives = 99/195 (50%), Gaps = 18/195 (9%)
Query: 18 PDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPILLKPKSRGYIQLNATDPLW 77
PDIQFH P V D P + + V P ++ S G+++L + +P
Sbjct: 396 PDIQFHFLPSQVIDHGRVPTQQEAYQ---------VHVGP--MRGTSVGWLKLRSANPQ- 443
Query: 78 GPPLIFPKFFTKKPDLDVFVAGMKLGASIVQTEAMQKIHARLVDVSPPQCVFYKFGTWDY 137
P+I P + + + D++ F +KL I EA+ + + P D
Sbjct: 444 DHPVIQPNYLSTETDIEDFRLCVKLTREIFAQEALAPFRGKELQ---PGSHIQSDKEID- 499
Query: 138 WACIAMQFTGTIYHPVGTCKMGPKDDPGSVVDARLRVHGVENLRVVDASIMPKIVRGNTN 197
+ YHP TCKMG DP +VVD + RV GVENLRVVDASIMP +V GN N
Sbjct: 500 --AFVRAKADSAYHPSCTCKMGQPSDPTAVVDPQTRVLGVENLRVVDASIMPSMVSGNLN 557
Query: 198 APTIMIAEKAADMIK 212
APTIMIAEKAAD+IK
Sbjct: 558 APTIMIAEKAADIIK 572
>sp|Q0T7N0|BETA_SHIF8 Choline dehydrogenase OS=Shigella flexneri serotype 5b (strain
8401) GN=betA PE=3 SV=1
Length = 556
Score = 107 bits (266), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 71/211 (33%), Positives = 105/211 (49%), Gaps = 22/211 (10%)
Query: 10 RLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPILLKPKSRGYIQ 69
R + P+IQ+H P+++ +N V G ++ SRG+++
Sbjct: 350 RSREEFAWPNIQYHFLPVAINYNGSNAVKEH-----------GFQCHVGSMRSPSRGHVR 398
Query: 70 LNATDPLWGPPLIFPKFFTKKPDLDVFVAGMKLGASIVQTEAMQKIHARLVDVSPP-QCV 128
+ + DP P ++F + + + D F +++ I+ A+ + R ++SP +C
Sbjct: 399 IKSRDPHQHPAILF-NYMSHEQDWQEFRDAIRITREIMHQPALDQYRGR--EISPGVECQ 455
Query: 129 FYKFGTWDYWACIAMQFTGTIYHPVGTCKMGPKDDPGSVVDARLRVHGVENLRVVDASIM 188
T + T +HP GTCKMG D SVVD RVHG+E LRVVDASIM
Sbjct: 456 -----TDEQLDEFVRNHAETAFHPCGTCKMGY--DEMSVVDGEGRVHGLEGLRVVDASIM 508
Query: 189 PKIVRGNTNAPTIMIAEKAADMIKEDWILDR 219
P+I+ GN NA TIMI EK ADMI+ L R
Sbjct: 509 PQIITGNLNATTIMIGEKIADMIRGQEALSR 539
>sp|Q9L4K0|BETA2_CHRSD Choline dehydrogenase OS=Chromohalobacter salexigens (strain DSM
3043 / ATCC BAA-138 / NCIMB 13768) GN=betA PE=1 SV=1
Length = 558
Score = 107 bits (266), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 101/207 (48%), Gaps = 22/207 (10%)
Query: 8 CG--RLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPILLKPKSR 65
CG R D + P++Q+H P+++ S N G ++ +SR
Sbjct: 348 CGFIRSRDDEEWPNLQYHFLPIAI-----------SYNGKSAVQAHGFQAHVGSMRSESR 396
Query: 66 GYIQLNATDPLWGPPLIFPKFFTKKPDLDVFVAGMKLGASIVQTEAMQKIHARLVDVSPP 125
G I+L + DP P ++F + K+ D + F ++L I+ A + R + P
Sbjct: 397 GRIRLTSKDPHAAPSILF-NYMAKEKDWEEFRDAIRLTREIIAQPAFDRYRGREISPGP- 454
Query: 126 QCVFYKFGTWDYWACIAMQFTGTIYHPVGTCKMGPKDDPGSVVDARLRVHGVENLRVVDA 185
+ + Q T YHP G+C+MG D +V DA+ RVHG+E LRVVDA
Sbjct: 455 -----DVQSDEELDNFVKQHAETAYHPCGSCRMGEGDM--AVTDAQGRVHGLEGLRVVDA 507
Query: 186 SIMPKIVRGNTNAPTIMIAEKAADMIK 212
S+ P I GN NAPTIM+AEK AD I+
Sbjct: 508 SLFPVIPTGNLNAPTIMLAEKIADRIR 534
>sp|A8AJN0|BETA_CITK8 Choline dehydrogenase OS=Citrobacter koseri (strain ATCC BAA-895 /
CDC 4225-83 / SGSC4696) GN=betA PE=3 SV=1
Length = 558
Score = 106 bits (265), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 70/204 (34%), Positives = 102/204 (50%), Gaps = 22/204 (10%)
Query: 10 RLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPILLKPKSRGYIQ 69
R +++ P+IQ+H P+++ +N V G ++ SRG++
Sbjct: 350 RSSEAFSWPNIQYHFLPVAINYNGSNAVKEH-----------GFQCHVGSMRSPSRGHVH 398
Query: 70 LNATDPLWGPPLIFPKFFTKKPDLDVFVAGMKLGASIVQTEAMQKIHARLVDVSPP-QCV 128
+ + DP P ++F + + D F +++ I+ A+ K R ++SP C
Sbjct: 399 IKSRDPREHPAILF-NYMSTGQDWQEFRDAIRITREIINQPALDKYRGR--EISPGITCQ 455
Query: 129 FYKFGTWDYWACIAMQFTGTIYHPVGTCKMGPKDDPGSVVDARLRVHGVENLRVVDASIM 188
T + T +HP GTCKMG D +VVD RVHGVENLRVVDASIM
Sbjct: 456 -----TDEQLDAFVRDHAETAFHPCGTCKMGY--DEMAVVDGEGRVHGVENLRVVDASIM 508
Query: 189 PKIVRGNTNAPTIMIAEKAADMIK 212
P+I+ GN NA TIMI EK AD I+
Sbjct: 509 PQIITGNLNATTIMIGEKMADAIR 532
>sp|Q66D54|BETA_YERPS Choline dehydrogenase OS=Yersinia pseudotuberculosis serotype I
(strain IP32953) GN=betA PE=3 SV=1
Length = 567
Score = 106 bits (264), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 71/203 (34%), Positives = 103/203 (50%), Gaps = 20/203 (9%)
Query: 10 RLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPILLKPKSRGYIQ 69
R D+ P+IQ+H P+++ +N V G ++ SRG IQ
Sbjct: 350 RSRDAFTWPNIQYHFLPVAINYNGSNAVKEH-----------GFQAHVGSMRSPSRGRIQ 398
Query: 70 LNATDPLWGPPLIFPKFFTKKPDLDVFVAGMKLGASIVQTEAMQKIHARLVDVSPPQCVF 129
+ + DP P ++F + + + D F +++ I+ A+ R ++SP V
Sbjct: 399 VKSKDPRQHPSILF-NYMSNEQDWHEFRDAIRITREIIAQPALDPYRGR--EISPGANV- 454
Query: 130 YKFGTWDYWACIAMQFTGTIYHPVGTCKMGPKDDPGSVVDARLRVHGVENLRVVDASIMP 189
+ D + T YHP +CKMG DD +VVD + RVHGV+ LRVVDASIMP
Sbjct: 455 ---QSDDELDAFIREHAETAYHPSCSCKMG--DDKMAVVDGQGRVHGVQGLRVVDASIMP 509
Query: 190 KIVRGNTNAPTIMIAEKAADMIK 212
+I+ GN NA TIMIAEK AD I+
Sbjct: 510 QIITGNLNATTIMIAEKIADRIR 532
>sp|B2K8U4|BETA_YERPB Choline dehydrogenase OS=Yersinia pseudotuberculosis serotype IB
(strain PB1/+) GN=betA PE=3 SV=1
Length = 567
Score = 106 bits (264), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 71/203 (34%), Positives = 103/203 (50%), Gaps = 20/203 (9%)
Query: 10 RLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPILLKPKSRGYIQ 69
R D+ P+IQ+H P+++ +N V G ++ SRG IQ
Sbjct: 350 RSRDAFTWPNIQYHFLPVAINYNGSNAVKEH-----------GFQAHVGSMRSPSRGRIQ 398
Query: 70 LNATDPLWGPPLIFPKFFTKKPDLDVFVAGMKLGASIVQTEAMQKIHARLVDVSPPQCVF 129
+ + DP P ++F + + + D F +++ I+ A+ R ++SP V
Sbjct: 399 VKSKDPRQHPSILF-NYMSNEQDWHEFRDAIRITREIIAQPALDPYRGR--EISPGANV- 454
Query: 130 YKFGTWDYWACIAMQFTGTIYHPVGTCKMGPKDDPGSVVDARLRVHGVENLRVVDASIMP 189
+ D + T YHP +CKMG DD +VVD + RVHGV+ LRVVDASIMP
Sbjct: 455 ---QSDDELDAFIREHAETAYHPSCSCKMG--DDKMAVVDGQGRVHGVQGLRVVDASIMP 509
Query: 190 KIVRGNTNAPTIMIAEKAADMIK 212
+I+ GN NA TIMIAEK AD I+
Sbjct: 510 QIITGNLNATTIMIAEKIADRIR 532
>sp|B5Z1R0|BETA_ECO5E Choline dehydrogenase OS=Escherichia coli O157:H7 (strain EC4115 /
EHEC) GN=betA PE=3 SV=1
Length = 562
Score = 106 bits (264), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 71/211 (33%), Positives = 105/211 (49%), Gaps = 22/211 (10%)
Query: 10 RLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPILLKPKSRGYIQ 69
R + P+IQ+H P+++ +N V G ++ SRG+++
Sbjct: 350 RSREEFAWPNIQYHFLPVAINYNGSNAVKEH-----------GFQCHVGSMRSPSRGHVR 398
Query: 70 LNATDPLWGPPLIFPKFFTKKPDLDVFVAGMKLGASIVQTEAMQKIHARLVDVSP-PQCV 128
+ + DP P ++F + + + D F +++ I+ A+ + R ++SP +C
Sbjct: 399 IKSRDPHQHPAILF-NYMSHEQDWQEFRDAIRITREIMHQPALDQYRGR--EISPGTECQ 455
Query: 129 FYKFGTWDYWACIAMQFTGTIYHPVGTCKMGPKDDPGSVVDARLRVHGVENLRVVDASIM 188
T + T +HP GTCKMG D SVVD RVHG+E LRVVDASIM
Sbjct: 456 -----TDEQLDEFVRNHAETAFHPCGTCKMGY--DEMSVVDGEGRVHGLEGLRVVDASIM 508
Query: 189 PKIVRGNTNAPTIMIAEKAADMIKEDWILDR 219
P+I+ GN NA TIMI EK ADMI+ L R
Sbjct: 509 PQIITGNLNATTIMIGEKMADMIRGKEALPR 539
>sp|Q8X6C6|BETA_ECO57 Choline dehydrogenase OS=Escherichia coli O157:H7 GN=betA PE=3 SV=1
Length = 562
Score = 106 bits (264), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 71/211 (33%), Positives = 105/211 (49%), Gaps = 22/211 (10%)
Query: 10 RLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPILLKPKSRGYIQ 69
R + P+IQ+H P+++ +N V G ++ SRG+++
Sbjct: 350 RSREEFAWPNIQYHFLPVAINYNGSNAVKEH-----------GFQCHVGSMRSPSRGHVR 398
Query: 70 LNATDPLWGPPLIFPKFFTKKPDLDVFVAGMKLGASIVQTEAMQKIHARLVDVSP-PQCV 128
+ + DP P ++F + + + D F +++ I+ A+ + R ++SP +C
Sbjct: 399 IKSRDPHQHPAILF-NYMSHEQDWQEFRDAIRITREIMHQPALDQYRGR--EISPGTECQ 455
Query: 129 FYKFGTWDYWACIAMQFTGTIYHPVGTCKMGPKDDPGSVVDARLRVHGVENLRVVDASIM 188
T + T +HP GTCKMG D SVVD RVHG+E LRVVDASIM
Sbjct: 456 -----TDEQLDEFVRNHAETAFHPCGTCKMGY--DEMSVVDGEGRVHGLEGLRVVDASIM 508
Query: 189 PKIVRGNTNAPTIMIAEKAADMIKEDWILDR 219
P+I+ GN NA TIMI EK ADMI+ L R
Sbjct: 509 PQIITGNLNATTIMIGEKMADMIRGKEALPR 539
>sp|B6I074|BETA_ECOSE Choline dehydrogenase OS=Escherichia coli (strain SE11) GN=betA
PE=3 SV=1
Length = 556
Score = 106 bits (264), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 71/211 (33%), Positives = 105/211 (49%), Gaps = 22/211 (10%)
Query: 10 RLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPILLKPKSRGYIQ 69
R + P+IQ+H P+++ +N V G ++ SRG+++
Sbjct: 350 RSREEFAWPNIQYHFLPVAINYNGSNAVKEH-----------GFQCHVGSMRSPSRGHVR 398
Query: 70 LNATDPLWGPPLIFPKFFTKKPDLDVFVAGMKLGASIVQTEAMQKIHARLVDVSP-PQCV 128
+ + DP P ++F + + + D F +++ I+ A+ + R ++SP +C
Sbjct: 399 IKSRDPHQHPAILF-NYMSHEQDWQEFRDAIRITREIMHQPALDQYRGR--EISPGTECQ 455
Query: 129 FYKFGTWDYWACIAMQFTGTIYHPVGTCKMGPKDDPGSVVDARLRVHGVENLRVVDASIM 188
T + T +HP GTCKMG D SVVD RVHG+E LRVVDASIM
Sbjct: 456 -----TDEQLDEFVRNHAETAFHPCGTCKMGY--DEMSVVDGEGRVHGLEGLRVVDASIM 508
Query: 189 PKIVRGNTNAPTIMIAEKAADMIKEDWILDR 219
P+I+ GN NA TIMI EK ADMI+ L R
Sbjct: 509 PQIITGNLNATTIMIGEKIADMIRGQEALPR 539
>sp|A7ZWV4|BETA_ECOHS Choline dehydrogenase OS=Escherichia coli O9:H4 (strain HS) GN=betA
PE=3 SV=1
Length = 556
Score = 106 bits (264), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 71/211 (33%), Positives = 105/211 (49%), Gaps = 22/211 (10%)
Query: 10 RLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPILLKPKSRGYIQ 69
R + P+IQ+H P+++ +N V G ++ SRG+++
Sbjct: 350 RSREEFAWPNIQYHFLPVAINYNGSNAVKEH-----------GFQCHVGSMRSPSRGHVR 398
Query: 70 LNATDPLWGPPLIFPKFFTKKPDLDVFVAGMKLGASIVQTEAMQKIHARLVDVSP-PQCV 128
+ + DP P ++F + + + D F +++ I+ A+ + R ++SP +C
Sbjct: 399 IKSRDPHQHPAILF-NYMSHEQDWQEFRDAIRITREIMHQPALDQYRGR--EISPGTECQ 455
Query: 129 FYKFGTWDYWACIAMQFTGTIYHPVGTCKMGPKDDPGSVVDARLRVHGVENLRVVDASIM 188
T + T +HP GTCKMG D SVVD RVHG+E LRVVDASIM
Sbjct: 456 -----TDEQLDEFVRNHAETAFHPCGTCKMGY--DEMSVVDGEGRVHGLEGLRVVDASIM 508
Query: 189 PKIVRGNTNAPTIMIAEKAADMIKEDWILDR 219
P+I+ GN NA TIMI EK ADMI+ L R
Sbjct: 509 PQIITGNLNATTIMIGEKIADMIRGQEALPR 539
>sp|B7M2V5|BETA_ECO8A Choline dehydrogenase OS=Escherichia coli O8 (strain IAI1) GN=betA
PE=3 SV=1
Length = 556
Score = 106 bits (264), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 71/211 (33%), Positives = 105/211 (49%), Gaps = 22/211 (10%)
Query: 10 RLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPILLKPKSRGYIQ 69
R + P+IQ+H P+++ +N V G ++ SRG+++
Sbjct: 350 RSREEFAWPNIQYHFLPVAINYNGSNAVKEH-----------GFQCHVGSMRSPSRGHVR 398
Query: 70 LNATDPLWGPPLIFPKFFTKKPDLDVFVAGMKLGASIVQTEAMQKIHARLVDVSP-PQCV 128
+ + DP P ++F + + + D F +++ I+ A+ + R ++SP +C
Sbjct: 399 IKSRDPHQHPAILF-NYMSHEQDWQEFRDAIRITREIMHQPALDQYRGR--EISPGTECQ 455
Query: 129 FYKFGTWDYWACIAMQFTGTIYHPVGTCKMGPKDDPGSVVDARLRVHGVENLRVVDASIM 188
T + T +HP GTCKMG D SVVD RVHG+E LRVVDASIM
Sbjct: 456 -----TDEQLDEFVRNHAETAFHPCGTCKMGY--DEMSVVDGEGRVHGLEGLRVVDASIM 508
Query: 189 PKIVRGNTNAPTIMIAEKAADMIKEDWILDR 219
P+I+ GN NA TIMI EK ADMI+ L R
Sbjct: 509 PQIITGNLNATTIMIGEKIADMIRGQEALPR 539
>sp|B7L439|BETA_ECO55 Choline dehydrogenase OS=Escherichia coli (strain 55989 / EAEC)
GN=betA PE=3 SV=1
Length = 556
Score = 106 bits (264), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 71/211 (33%), Positives = 105/211 (49%), Gaps = 22/211 (10%)
Query: 10 RLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPILLKPKSRGYIQ 69
R + P+IQ+H P+++ +N V G ++ SRG+++
Sbjct: 350 RSREEFAWPNIQYHFLPVAINYNGSNAVKEH-----------GFQCHVGSMRSPSRGHVR 398
Query: 70 LNATDPLWGPPLIFPKFFTKKPDLDVFVAGMKLGASIVQTEAMQKIHARLVDVSP-PQCV 128
+ + DP P ++F + + + D F +++ I+ A+ + R ++SP +C
Sbjct: 399 IKSRDPHQHPAILF-NYMSHEQDWQEFRDAIRITREIMHQPALDQYRGR--EISPGTECQ 455
Query: 129 FYKFGTWDYWACIAMQFTGTIYHPVGTCKMGPKDDPGSVVDARLRVHGVENLRVVDASIM 188
T + T +HP GTCKMG D SVVD RVHG+E LRVVDASIM
Sbjct: 456 -----TDEQLDEFVRNHAETAFHPCGTCKMGY--DEMSVVDGEGRVHGLEGLRVVDASIM 508
Query: 189 PKIVRGNTNAPTIMIAEKAADMIKEDWILDR 219
P+I+ GN NA TIMI EK ADMI+ L R
Sbjct: 509 PQIITGNLNATTIMIGEKIADMIRGQEALPR 539
>sp|A7ZI50|BETA_ECO24 Choline dehydrogenase OS=Escherichia coli O139:H28 (strain E24377A
/ ETEC) GN=betA PE=3 SV=1
Length = 556
Score = 106 bits (264), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 71/211 (33%), Positives = 105/211 (49%), Gaps = 22/211 (10%)
Query: 10 RLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPILLKPKSRGYIQ 69
R + P+IQ+H P+++ +N V G ++ SRG+++
Sbjct: 350 RSREEFAWPNIQYHFLPVAINYNGSNAVKEH-----------GFQCHVGSMRSPSRGHVR 398
Query: 70 LNATDPLWGPPLIFPKFFTKKPDLDVFVAGMKLGASIVQTEAMQKIHARLVDVSP-PQCV 128
+ + DP P ++F + + + D F +++ I+ A+ + R ++SP +C
Sbjct: 399 IKSRDPHQHPAILF-NYMSHEQDWQEFRDAIRITREIMHQPALDQYRGR--EISPGTECQ 455
Query: 129 FYKFGTWDYWACIAMQFTGTIYHPVGTCKMGPKDDPGSVVDARLRVHGVENLRVVDASIM 188
T + T +HP GTCKMG D SVVD RVHG+E LRVVDASIM
Sbjct: 456 -----TDEQLDEFVRNHAETAFHPCGTCKMGY--DEMSVVDGEGRVHGLEGLRVVDASIM 508
Query: 189 PKIVRGNTNAPTIMIAEKAADMIKEDWILDR 219
P+I+ GN NA TIMI EK ADMI+ L R
Sbjct: 509 PQIITGNLNATTIMIGEKIADMIRGQEALPR 539
>sp|P17444|BETA_ECOLI Choline dehydrogenase OS=Escherichia coli (strain K12) GN=betA PE=1
SV=1
Length = 556
Score = 106 bits (264), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 71/211 (33%), Positives = 105/211 (49%), Gaps = 22/211 (10%)
Query: 10 RLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPILLKPKSRGYIQ 69
R + P+IQ+H P+++ +N V G ++ SRG+++
Sbjct: 350 RSREEFAWPNIQYHFLPVAINYNGSNAVKEH-----------GFQCHVGSMRSPSRGHVR 398
Query: 70 LNATDPLWGPPLIFPKFFTKKPDLDVFVAGMKLGASIVQTEAMQKIHARLVDVSPP-QCV 128
+ + DP P ++F + + + D F +++ I+ A+ + R ++SP +C
Sbjct: 399 IKSRDPHQHPAILF-NYMSHEQDWQEFRDAIRITREIMHQPALDQYRGR--EISPGVECQ 455
Query: 129 FYKFGTWDYWACIAMQFTGTIYHPVGTCKMGPKDDPGSVVDARLRVHGVENLRVVDASIM 188
T + T +HP GTCKMG D SVVD RVHG+E LRVVDASIM
Sbjct: 456 -----TDEQLDEFVRNHAETAFHPCGTCKMGY--DEMSVVDGEGRVHGLEGLRVVDASIM 508
Query: 189 PKIVRGNTNAPTIMIAEKAADMIKEDWILDR 219
P+I+ GN NA TIMI EK ADMI+ L R
Sbjct: 509 PQIITGNLNATTIMIGEKIADMIRGQEALPR 539
>sp|B1J0W6|BETA_ECOLC Choline dehydrogenase OS=Escherichia coli (strain ATCC 8739 / DSM
1576 / Crooks) GN=betA PE=3 SV=1
Length = 556
Score = 106 bits (264), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 71/211 (33%), Positives = 105/211 (49%), Gaps = 22/211 (10%)
Query: 10 RLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPILLKPKSRGYIQ 69
R + P+IQ+H P+++ +N V G ++ SRG+++
Sbjct: 350 RSREEFAWPNIQYHFLPVAINYNGSNAVKEH-----------GFQCHVGSMRSPSRGHVR 398
Query: 70 LNATDPLWGPPLIFPKFFTKKPDLDVFVAGMKLGASIVQTEAMQKIHARLVDVSPP-QCV 128
+ + DP P ++F + + + D F +++ I+ A+ + R ++SP +C
Sbjct: 399 IKSRDPHQHPAILF-NYMSHEQDWQEFRDAIRITREIMHQPALDQYRGR--EISPGVECQ 455
Query: 129 FYKFGTWDYWACIAMQFTGTIYHPVGTCKMGPKDDPGSVVDARLRVHGVENLRVVDASIM 188
T + T +HP GTCKMG D SVVD RVHG+E LRVVDASIM
Sbjct: 456 -----TDEQLDEFVRNHAETAFHPCGTCKMGY--DEMSVVDGEGRVHGLEGLRVVDASIM 508
Query: 189 PKIVRGNTNAPTIMIAEKAADMIKEDWILDR 219
P+I+ GN NA TIMI EK ADMI+ L R
Sbjct: 509 PQIITGNLNATTIMIGEKIADMIRGQEALPR 539
>sp|B1XE52|BETA_ECODH Choline dehydrogenase OS=Escherichia coli (strain K12 / DH10B)
GN=betA PE=3 SV=1
Length = 556
Score = 106 bits (264), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 71/211 (33%), Positives = 105/211 (49%), Gaps = 22/211 (10%)
Query: 10 RLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPILLKPKSRGYIQ 69
R + P+IQ+H P+++ +N V G ++ SRG+++
Sbjct: 350 RSREEFAWPNIQYHFLPVAINYNGSNAVKEH-----------GFQCHVGSMRSPSRGHVR 398
Query: 70 LNATDPLWGPPLIFPKFFTKKPDLDVFVAGMKLGASIVQTEAMQKIHARLVDVSPP-QCV 128
+ + DP P ++F + + + D F +++ I+ A+ + R ++SP +C
Sbjct: 399 IKSRDPHQHPAILF-NYMSHEQDWQEFRDAIRITREIMHQPALDQYRGR--EISPGVECQ 455
Query: 129 FYKFGTWDYWACIAMQFTGTIYHPVGTCKMGPKDDPGSVVDARLRVHGVENLRVVDASIM 188
T + T +HP GTCKMG D SVVD RVHG+E LRVVDASIM
Sbjct: 456 -----TDEQLDEFVRNHAETAFHPCGTCKMGY--DEMSVVDGEGRVHGLEGLRVVDASIM 508
Query: 189 PKIVRGNTNAPTIMIAEKAADMIKEDWILDR 219
P+I+ GN NA TIMI EK ADMI+ L R
Sbjct: 509 PQIITGNLNATTIMIGEKIADMIRGQEALPR 539
>sp|B1JSR0|BETA_YERPY Choline dehydrogenase OS=Yersinia pseudotuberculosis serotype O:3
(strain YPIII) GN=betA PE=3 SV=1
Length = 567
Score = 105 bits (263), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 71/203 (34%), Positives = 102/203 (50%), Gaps = 20/203 (9%)
Query: 10 RLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPILLKPKSRGYIQ 69
R D+ P+IQ+H P+++ +N V G ++ SRG IQ
Sbjct: 350 RSRDAFTWPNIQYHFLPVAINYNGSNAVKEH-----------GFQAHVGSMRSPSRGRIQ 398
Query: 70 LNATDPLWGPPLIFPKFFTKKPDLDVFVAGMKLGASIVQTEAMQKIHARLVDVSPPQCVF 129
+ + DP P ++F + + + D F +++ I+ A+ R ++SP V
Sbjct: 399 VKSKDPRQHPSILF-NYMSSEQDWHEFRDAIRITREIIAQPALDPYRGR--EISPGANVQ 455
Query: 130 YKFGTWDYWACIAMQFTGTIYHPVGTCKMGPKDDPGSVVDARLRVHGVENLRVVDASIMP 189
D + T YHP +CKMG DD +VVD + RVHGV+ LRVVDASIMP
Sbjct: 456 ND----DELDAFIREHAETAYHPSCSCKMG--DDKMAVVDGQGRVHGVQGLRVVDASIMP 509
Query: 190 KIVRGNTNAPTIMIAEKAADMIK 212
+I+ GN NA TIMIAEK AD I+
Sbjct: 510 QIITGNLNATTIMIAEKIADRIR 532
>sp|A7FKL6|BETA_YERP3 Choline dehydrogenase OS=Yersinia pseudotuberculosis serotype O:1b
(strain IP 31758) GN=betA PE=3 SV=1
Length = 567
Score = 105 bits (263), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 71/203 (34%), Positives = 102/203 (50%), Gaps = 20/203 (9%)
Query: 10 RLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPILLKPKSRGYIQ 69
R D+ P+IQ+H P+++ +N V G ++ SRG IQ
Sbjct: 350 RSRDAFTWPNIQYHFLPVAINYNGSNAVKEH-----------GFQAHVGSMRSPSRGRIQ 398
Query: 70 LNATDPLWGPPLIFPKFFTKKPDLDVFVAGMKLGASIVQTEAMQKIHARLVDVSPPQCVF 129
+ + DP P ++F + + + D F +++ I+ A+ R ++SP V
Sbjct: 399 VKSKDPRQHPSILF-NYMSSEQDWHEFRDAIRITREIIAQPALDPYRGR--EISPGANVQ 455
Query: 130 YKFGTWDYWACIAMQFTGTIYHPVGTCKMGPKDDPGSVVDARLRVHGVENLRVVDASIMP 189
D + T YHP +CKMG DD +VVD + RVHGV+ LRVVDASIMP
Sbjct: 456 ND----DELDAFIREHAETAYHPSCSCKMG--DDKMAVVDGQGRVHGVQGLRVVDASIMP 509
Query: 190 KIVRGNTNAPTIMIAEKAADMIK 212
+I+ GN NA TIMIAEK AD I+
Sbjct: 510 QIITGNLNATTIMIAEKIADRIR 532
>sp|Q1CFR7|BETA_YERPN Choline dehydrogenase OS=Yersinia pestis bv. Antiqua (strain
Nepal516) GN=betA PE=3 SV=1
Length = 567
Score = 105 bits (263), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 71/203 (34%), Positives = 102/203 (50%), Gaps = 20/203 (9%)
Query: 10 RLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPILLKPKSRGYIQ 69
R D+ P+IQ+H P+++ +N V G ++ SRG IQ
Sbjct: 350 RSRDAFTWPNIQYHFLPVAINYNGSNAVKEH-----------GFQAHVGSMRSPSRGRIQ 398
Query: 70 LNATDPLWGPPLIFPKFFTKKPDLDVFVAGMKLGASIVQTEAMQKIHARLVDVSPPQCVF 129
+ + DP P ++F + + + D F +++ I+ A+ R ++SP V
Sbjct: 399 VKSKDPRQHPSILF-NYMSSEQDWHEFRDAIRITREIIAQPALDPYRGR--EISPGANVQ 455
Query: 130 YKFGTWDYWACIAMQFTGTIYHPVGTCKMGPKDDPGSVVDARLRVHGVENLRVVDASIMP 189
D + T YHP +CKMG DD +VVD + RVHGV+ LRVVDASIMP
Sbjct: 456 ND----DELDAFIREHAETAYHPSCSCKMG--DDKMAVVDGQGRVHGVQGLRVVDASIMP 509
Query: 190 KIVRGNTNAPTIMIAEKAADMIK 212
+I+ GN NA TIMIAEK AD I+
Sbjct: 510 QIITGNLNATTIMIAEKIADRIR 532
>sp|Q8ZGW0|BETA_YERPE Choline dehydrogenase OS=Yersinia pestis GN=betA PE=3 SV=1
Length = 567
Score = 105 bits (263), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 71/203 (34%), Positives = 102/203 (50%), Gaps = 20/203 (9%)
Query: 10 RLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPILLKPKSRGYIQ 69
R D+ P+IQ+H P+++ +N V G ++ SRG IQ
Sbjct: 350 RSRDAFTWPNIQYHFLPVAINYNGSNAVKEH-----------GFQAHVGSMRSPSRGRIQ 398
Query: 70 LNATDPLWGPPLIFPKFFTKKPDLDVFVAGMKLGASIVQTEAMQKIHARLVDVSPPQCVF 129
+ + DP P ++F + + + D F +++ I+ A+ R ++SP V
Sbjct: 399 VKSKDPRQHPSILF-NYMSSEQDWHEFRDAIRITREIIAQPALDPYRGR--EISPGANVQ 455
Query: 130 YKFGTWDYWACIAMQFTGTIYHPVGTCKMGPKDDPGSVVDARLRVHGVENLRVVDASIMP 189
D + T YHP +CKMG DD +VVD + RVHGV+ LRVVDASIMP
Sbjct: 456 ND----DELDAFIREHAETAYHPSCSCKMG--DDKMAVVDGQGRVHGVQGLRVVDASIMP 509
Query: 190 KIVRGNTNAPTIMIAEKAADMIK 212
+I+ GN NA TIMIAEK AD I+
Sbjct: 510 QIITGNLNATTIMIAEKIADRIR 532
>sp|Q1C932|BETA_YERPA Choline dehydrogenase OS=Yersinia pestis bv. Antiqua (strain
Antiqua) GN=betA PE=3 SV=1
Length = 567
Score = 105 bits (263), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 71/203 (34%), Positives = 102/203 (50%), Gaps = 20/203 (9%)
Query: 10 RLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPILLKPKSRGYIQ 69
R D+ P+IQ+H P+++ +N V G ++ SRG IQ
Sbjct: 350 RSRDAFTWPNIQYHFLPVAINYNGSNAVKEH-----------GFQAHVGSMRSPSRGRIQ 398
Query: 70 LNATDPLWGPPLIFPKFFTKKPDLDVFVAGMKLGASIVQTEAMQKIHARLVDVSPPQCVF 129
+ + DP P ++F + + + D F +++ I+ A+ R ++SP V
Sbjct: 399 VKSKDPRQHPSILF-NYMSSEQDWHEFRDAIRITREIIAQPALDPYRGR--EISPGANVQ 455
Query: 130 YKFGTWDYWACIAMQFTGTIYHPVGTCKMGPKDDPGSVVDARLRVHGVENLRVVDASIMP 189
D + T YHP +CKMG DD +VVD + RVHGV+ LRVVDASIMP
Sbjct: 456 ND----DELDAFIREHAETAYHPSCSCKMG--DDKMAVVDGQGRVHGVQGLRVVDASIMP 509
Query: 190 KIVRGNTNAPTIMIAEKAADMIK 212
+I+ GN NA TIMIAEK AD I+
Sbjct: 510 QIITGNLNATTIMIAEKIADRIR 532
>sp|B1LIJ7|BETA_ECOSM Choline dehydrogenase OS=Escherichia coli (strain SMS-3-5 / SECEC)
GN=betA PE=3 SV=1
Length = 562
Score = 105 bits (263), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/204 (33%), Positives = 103/204 (50%), Gaps = 22/204 (10%)
Query: 10 RLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPILLKPKSRGYIQ 69
R + P+IQ+H P+++ +N V G ++ SRG+++
Sbjct: 350 RSREEFAWPNIQYHFLPVAINYNGSNAVKEH-----------GFQCHVGSMRSPSRGHVR 398
Query: 70 LNATDPLWGPPLIFPKFFTKKPDLDVFVAGMKLGASIVQTEAMQKIHARLVDVSPP-QCV 128
+ + P P ++F + + + D F +++ I+ A+ + H R ++SP +C
Sbjct: 399 IKSRAPHQHPAILF-NYMSHEQDWQEFRDAIRITREIMHQPALDQYHGR--EISPGVECQ 455
Query: 129 FYKFGTWDYWACIAMQFTGTIYHPVGTCKMGPKDDPGSVVDARLRVHGVENLRVVDASIM 188
T + T +HP GTCKMG D SVVD RVHG+E LRVVDASIM
Sbjct: 456 -----TDEQLDEFVRNHAETAFHPCGTCKMGY--DEMSVVDGEGRVHGLEGLRVVDASIM 508
Query: 189 PKIVRGNTNAPTIMIAEKAADMIK 212
P+I+ GN NA TIMI EK ADMI+
Sbjct: 509 PQIITGNLNATTIMIGEKMADMIR 532
>sp|Q6FDF9|BETA_ACIAD Choline dehydrogenase OS=Acinetobacter sp. (strain ADP1) GN=betA
PE=3 SV=1
Length = 553
Score = 105 bits (262), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 71/210 (33%), Positives = 108/210 (51%), Gaps = 20/210 (9%)
Query: 10 RLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPILLKPKSRGYIQ 69
R +D + P+IQ+H P+++ +N V G ++ SRG+I+
Sbjct: 354 RSSDEFEWPNIQYHFLPVAINYNGSNAVKEH-----------GFQAHVGSMRSPSRGHIK 402
Query: 70 LNATDPLWGPPLIFPKFFTKKPDLDVFVAGMKLGASIVQTEAMQKIHARLVDVSPPQCVF 129
L + DP P ++F + + + D F A +++ I+ A+ R ++SP + +
Sbjct: 403 LKSKDPFEHPSILF-NYMSTEQDWQEFRAAIRITREIMHQPALDPY--RGEEISPGKQLS 459
Query: 130 YKFGTWDYWACIAMQFTGTIYHPVGTCKMGPKDDPGSVVDARLRVHGVENLRVVDASIMP 189
D+ T YHP +CKMG +D +VVD + RVHG++ LRVVDASIMP
Sbjct: 460 TDTQLDDF----VRNHAETAYHPSCSCKMG--EDDMAVVDHQGRVHGLQGLRVVDASIMP 513
Query: 190 KIVRGNTNAPTIMIAEKAADMIKEDWILDR 219
I+ GN NA TIM+AEK AD I+E L R
Sbjct: 514 LIITGNLNATTIMMAEKIADQIRERAPLPR 543
>sp|Q1RFM3|BETA_ECOUT Choline dehydrogenase OS=Escherichia coli (strain UTI89 / UPEC)
GN=betA PE=3 SV=2
Length = 562
Score = 105 bits (262), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/204 (33%), Positives = 104/204 (50%), Gaps = 22/204 (10%)
Query: 10 RLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPILLKPKSRGYIQ 69
R + P+IQ+H P+++ +N V G ++ SRG+++
Sbjct: 350 RSREEFAWPNIQYHFLPVAINYNGSNAVKEH-----------GFQCHVGSMRSPSRGHVR 398
Query: 70 LNATDPLWGPPLIFPKFFTKKPDLDVFVAGMKLGASIVQTEAMQKIHARLVDVSPP-QCV 128
+ + DP P ++F + + + D F +++ I+ A+ + R ++SP +C
Sbjct: 399 IKSRDPHQHPAILF-NYMSHEQDWQEFRDAIRITREIMHQPALDQYRGR--EISPGVECQ 455
Query: 129 FYKFGTWDYWACIAMQFTGTIYHPVGTCKMGPKDDPGSVVDARLRVHGVENLRVVDASIM 188
T + T +HP GTCKMG D +VVDA RVHG+E LRVVDASIM
Sbjct: 456 -----TDEQLDEFVRNHAETAFHPCGTCKMGY--DEMAVVDAEGRVHGLEGLRVVDASIM 508
Query: 189 PKIVRGNTNAPTIMIAEKAADMIK 212
P+I+ GN NA TIMI EK ADMI+
Sbjct: 509 PQIITGNLNATTIMIGEKMADMIR 532
>sp|B7MCD0|BETA_ECO45 Choline dehydrogenase OS=Escherichia coli O45:K1 (strain S88 /
ExPEC) GN=betA PE=3 SV=1
Length = 562
Score = 105 bits (262), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/204 (33%), Positives = 104/204 (50%), Gaps = 22/204 (10%)
Query: 10 RLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPILLKPKSRGYIQ 69
R + P+IQ+H P+++ +N V G ++ SRG+++
Sbjct: 350 RSREEFAWPNIQYHFLPVAINYNGSNAVKEH-----------GFQCHVGSMRSPSRGHVR 398
Query: 70 LNATDPLWGPPLIFPKFFTKKPDLDVFVAGMKLGASIVQTEAMQKIHARLVDVSPP-QCV 128
+ + DP P ++F + + + D F +++ I+ A+ + R ++SP +C
Sbjct: 399 IKSRDPHQHPAILF-NYMSHEQDWQEFRDAIRITREIMHQPALDQYRGR--EISPGVECQ 455
Query: 129 FYKFGTWDYWACIAMQFTGTIYHPVGTCKMGPKDDPGSVVDARLRVHGVENLRVVDASIM 188
T + T +HP GTCKMG D +VVDA RVHG+E LRVVDASIM
Sbjct: 456 -----TDEQLDEFVRNHAETAFHPCGTCKMGY--DEMAVVDAEGRVHGLEGLRVVDASIM 508
Query: 189 PKIVRGNTNAPTIMIAEKAADMIK 212
P+I+ GN NA TIMI EK ADMI+
Sbjct: 509 PQIITGNLNATTIMIGEKMADMIR 532
>sp|B4EX94|BETA_PROMH Choline dehydrogenase OS=Proteus mirabilis (strain HI4320) GN=betA
PE=3 SV=1
Length = 555
Score = 105 bits (261), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 69/203 (33%), Positives = 105/203 (51%), Gaps = 20/203 (9%)
Query: 10 RLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPILLKPKSRGYIQ 69
R ++ P+IQFH P+++ +N V G ++ SRG I+
Sbjct: 350 RSSEKFAWPNIQFHFLPVAINYNGSNAVEVH-----------GFQAHVGSMRSPSRGRIK 398
Query: 70 LNATDPLWGPPLIFPKFFTKKPDLDVFVAGMKLGASIVQTEAMQKIHARLVDVSPPQCVF 129
+ + DP P ++F + + + D F A +++ I+ A+ R ++SP + +
Sbjct: 399 ITSRDPHQHPSILF-NYMSTEQDWQEFRAAIRITREIMAQPALDPY--RGEEISPGKDI- 454
Query: 130 YKFGTWDYWACIAMQFTGTIYHPVGTCKMGPKDDPGSVVDARLRVHGVENLRVVDASIMP 189
T + + T +HP G+CKMG +D +VVD RVHG+E+LRV+DASIMP
Sbjct: 455 ---QTDEQLDAFVRERAETAFHPCGSCKMG--NDEMAVVDGAGRVHGIESLRVIDASIMP 509
Query: 190 KIVRGNTNAPTIMIAEKAADMIK 212
I+ GN NA TIMIAEK AD IK
Sbjct: 510 NIITGNLNATTIMIAEKMADKIK 532
>sp|Q0TKW1|BETA_ECOL5 Choline dehydrogenase OS=Escherichia coli O6:K15:H31 (strain 536 /
UPEC) GN=betA PE=3 SV=2
Length = 556
Score = 104 bits (260), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 70/211 (33%), Positives = 105/211 (49%), Gaps = 22/211 (10%)
Query: 10 RLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPILLKPKSRGYIQ 69
R + P+IQ+H P+++ +N V G ++ SRG+++
Sbjct: 350 RSREEFAWPNIQYHFLPVAINYNGSNAVKEH-----------GFQCHVGSMRSPSRGHVR 398
Query: 70 LNATDPLWGPPLIFPKFFTKKPDLDVFVAGMKLGASIVQTEAMQKIHARLVDVSPP-QCV 128
+ + DP P ++F + + + D F +++ I+ A+ + R ++SP +C
Sbjct: 399 IKSRDPHQHPGILF-NYMSHEQDWQEFRDAIRITREIMHQPALDQYRGR--EISPGVECQ 455
Query: 129 FYKFGTWDYWACIAMQFTGTIYHPVGTCKMGPKDDPGSVVDARLRVHGVENLRVVDASIM 188
T + T +HP GTCKMG D +VVD RVHG+E LRVVDASIM
Sbjct: 456 -----TDEQLDEFVRNHAETAFHPCGTCKMGY--DEMAVVDGEGRVHGLEGLRVVDASIM 508
Query: 189 PKIVRGNTNAPTIMIAEKAADMIKEDWILDR 219
P+I+ GN NA TIMI EK ADMI+ L R
Sbjct: 509 PQIITGNLNATTIMIGEKIADMIRGKEALPR 539
>sp|Q8FKI9|BETA_ECOL6 Choline dehydrogenase OS=Escherichia coli O6:H1 (strain CFT073 /
ATCC 700928 / UPEC) GN=betA PE=3 SV=2
Length = 556
Score = 104 bits (259), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 70/211 (33%), Positives = 105/211 (49%), Gaps = 22/211 (10%)
Query: 10 RLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPILLKPKSRGYIQ 69
R + P+IQ+H P+++ +N V G ++ SRG+++
Sbjct: 350 RSREEFAWPNIQYHFLPVAINYNGSNAVKEH-----------GFQCHVGSMRSPSRGHVR 398
Query: 70 LNATDPLWGPPLIFPKFFTKKPDLDVFVAGMKLGASIVQTEAMQKIHARLVDVSPP-QCV 128
+ + DP P ++F + + + D F +++ I+ A+ + R ++SP +C
Sbjct: 399 IKSRDPHQHPGILF-NYMSHEQDWQEFRDAIRITREIMHQPALDQYRGR--EISPGVECQ 455
Query: 129 FYKFGTWDYWACIAMQFTGTIYHPVGTCKMGPKDDPGSVVDARLRVHGVENLRVVDASIM 188
T + T +HP GTCKMG D +VVD RVHG+E LRVVDASIM
Sbjct: 456 -----TDEQLDEFVRNHAETAFHPCGTCKMGY--DEMAVVDGEGRVHGLEGLRVVDASIM 508
Query: 189 PKIVRGNTNAPTIMIAEKAADMIKEDWILDR 219
P+I+ GN NA TIMI EK ADMI+ L R
Sbjct: 509 PQIITGNLNATTIMIGEKIADMIRGKEALPR 539
>sp|B7N8L3|BETA_ECOLU Choline dehydrogenase OS=Escherichia coli O17:K52:H18 (strain
UMN026 / ExPEC) GN=betA PE=3 SV=1
Length = 556
Score = 104 bits (259), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 68/204 (33%), Positives = 103/204 (50%), Gaps = 22/204 (10%)
Query: 10 RLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPILLKPKSRGYIQ 69
R + P+IQ+H P+++ +N V G ++ SRG+++
Sbjct: 350 RSREEFAWPNIQYHFLPVAINYNGSNAVKEH-----------GFQCHVGSMRSPSRGHVR 398
Query: 70 LNATDPLWGPPLIFPKFFTKKPDLDVFVAGMKLGASIVQTEAMQKIHARLVDVSPP-QCV 128
+ + DP P ++F + + + D F +++ I+ A+ + R ++SP +C
Sbjct: 399 IKSRDPHQHPAILF-NYMSHEQDWQEFRDAIRITREIMHQPALDQYRGR--EISPGVECQ 455
Query: 129 FYKFGTWDYWACIAMQFTGTIYHPVGTCKMGPKDDPGSVVDARLRVHGVENLRVVDASIM 188
T + T +HP GTCKMG D +VVD RVHG+E LRVVDASIM
Sbjct: 456 -----TDEQLDEFVRNHAETAFHPCGTCKMGY--DEMAVVDGEGRVHGLEGLRVVDASIM 508
Query: 189 PKIVRGNTNAPTIMIAEKAADMIK 212
P+I+ GN NA TIMI EK ADMI+
Sbjct: 509 PQIITGNLNATTIMIGEKMADMIR 532
>sp|Q4K4K7|BETA_PSEF5 Choline dehydrogenase OS=Pseudomonas fluorescens (strain Pf-5 /
ATCC BAA-477) GN=betA PE=3 SV=1
Length = 567
Score = 103 bits (258), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 69/203 (33%), Positives = 102/203 (50%), Gaps = 20/203 (9%)
Query: 10 RLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPILLKPKSRGYIQ 69
R + + P+IQ+H P+++ +N V G ++ SRG +Q
Sbjct: 352 RTREEFEWPNIQYHFLPVAINYNGSNGVKEH-----------GFQAHMGSMRSPSRGRVQ 400
Query: 70 LNATDPLWGPPLIFPKFFTKKPDLDVFVAGMKLGASIVQTEAMQKIHARLVDVSPPQCVF 129
L + DP P ++F + + D F G++L I+Q A+ R ++SP
Sbjct: 401 LKSKDPRQHPSILF-NYMATEQDWQEFRDGIRLTREIMQQPALDPFRGR--EISPG---- 453
Query: 130 YKFGTWDYWACIAMQFTGTIYHPVGTCKMGPKDDPGSVVDARLRVHGVENLRVVDASIMP 189
+ T + + T +HP +CKMG D +VVD + RVHG++ LRVVDASIMP
Sbjct: 454 IEVQTDEQLDKFVREHAETAFHPSCSCKMGTDDM--AVVDGQGRVHGMQGLRVVDASIMP 511
Query: 190 KIVRGNTNAPTIMIAEKAADMIK 212
I GN NAPTIM+AEK AD I+
Sbjct: 512 IITTGNLNAPTIMMAEKIADKIR 534
>sp|B7UJG4|BETA_ECO27 Choline dehydrogenase OS=Escherichia coli O127:H6 (strain E2348/69
/ EPEC) GN=betA PE=3 SV=1
Length = 556
Score = 103 bits (257), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 70/211 (33%), Positives = 104/211 (49%), Gaps = 22/211 (10%)
Query: 10 RLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPILLKPKSRGYIQ 69
R + P+IQ+H P+++ +N V G ++ SRG+++
Sbjct: 350 RSREEFAWPNIQYHFLPVAINYNGSNAVKEH-----------GFQCHVGSMRSPSRGHVR 398
Query: 70 LNATDPLWGPPLIFPKFFTKKPDLDVFVAGMKLGASIVQTEAMQKIHARLVDVSPP-QCV 128
+ + DP P ++F + + + D F ++ I+ A+ + R ++SP +C
Sbjct: 399 IKSRDPHQHPAILF-NYMSHEQDWQEFRDAIRTTREIMHQPALDQYRGR--EISPGVECQ 455
Query: 129 FYKFGTWDYWACIAMQFTGTIYHPVGTCKMGPKDDPGSVVDARLRVHGVENLRVVDASIM 188
T + T +HP GTCKMG D +VVD RVHG+E LRVVDASIM
Sbjct: 456 -----TDEQLDEFVRNHAETAFHPCGTCKMGY--DEMAVVDGEGRVHGLEGLRVVDASIM 508
Query: 189 PKIVRGNTNAPTIMIAEKAADMIKEDWILDR 219
P+I+ GN NA TIMI EK ADMI+ L R
Sbjct: 509 PQIITGNLNATTIMIGEKIADMIRGKEALPR 539
>sp|A7MFA8|BETA_CROS8 Choline dehydrogenase OS=Cronobacter sakazakii (strain ATCC
BAA-894) GN=betA PE=3 SV=1
Length = 559
Score = 103 bits (257), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 70/204 (34%), Positives = 101/204 (49%), Gaps = 22/204 (10%)
Query: 10 RLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPILLKPKSRGYIQ 69
R + P+IQ+H P+++ +N V A G ++ SRG+++
Sbjct: 350 RSREEFAWPNIQYHFLPVAINYNGSNAVEAH-----------GFQCHVGSMRSPSRGHVR 398
Query: 70 LNATDPLWGPPLIFPKFFTKKPDLDVFVAGMKLGASIVQTEAMQKIHARLVDVSPP-QCV 128
+ + DP P ++F + + + D F +++ I+ A+ K R ++SP C
Sbjct: 399 IKSRDPHQHPAILF-NYMSHEQDWQEFRDAIRITRQIINQPALDKFRGR--EISPGIDCQ 455
Query: 129 FYKFGTWDYWACIAMQFTGTIYHPVGTCKMGPKDDPGSVVDARLRVHGVENLRVVDASIM 188
T + T YHP GTCKMG D +VVD RVHG+E LRVVDASIM
Sbjct: 456 -----TDEQLDEFVRNHAETAYHPCGTCKMG--SDEMAVVDDEGRVHGLEGLRVVDASIM 508
Query: 189 PKIVRGNTNAPTIMIAEKAADMIK 212
P I+ GN NA TIMI EK AD I+
Sbjct: 509 PLIITGNLNATTIMIGEKIADNIR 532
>sp|C3MIE4|BETA_RHISN Choline dehydrogenase OS=Rhizobium sp. (strain NGR234) GN=betA PE=3
SV=1
Length = 549
Score = 103 bits (257), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 71/202 (35%), Positives = 101/202 (50%), Gaps = 18/202 (8%)
Query: 10 RLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPILLKPKSRGYIQ 69
R A + PDIQ+H P+++R ++ N F + G + KSRG +
Sbjct: 342 RSAPGVKQPDIQYHFLPVAIRY-----DGKAAANTHGFQVHVGYNL------SKSRGSVT 390
Query: 70 LNATDPLWGPPLIFPKFFTKKPDLDVFVAGMKLGASIVQTEAMQKIHARLVDVSPPQCVF 129
L A+DP P + F + + D + F ++L I +A + R ++ P + V
Sbjct: 391 LRASDPKADPVIRF-NYMSHPEDWEKFRHCVRLTREIFGQKAFDQY--RGPEIQPGERV- 446
Query: 130 YKFGTWDYWACIAMQFTGTIYHPVGTCKMGPKDDPGSVVDARLRVHGVENLRVVDASIMP 189
T + + + YHP GTCKMG KDDP +VVD RV GV+ LRV D+SI P
Sbjct: 447 ---QTDEEIDAFLREHLESAYHPCGTCKMGSKDDPMAVVDPETRVIGVDGLRVADSSIFP 503
Query: 190 KIVRGNTNAPTIMIAEKAADMI 211
+ GN NAP+IM EKAAD I
Sbjct: 504 HVTYGNLNAPSIMTGEKAADHI 525
>sp|Q48CM7|BETA_PSE14 Choline dehydrogenase OS=Pseudomonas syringae pv. phaseolicola
(strain 1448A / Race 6) GN=betA PE=3 SV=1
Length = 568
Score = 103 bits (257), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 69/203 (33%), Positives = 106/203 (52%), Gaps = 20/203 (9%)
Query: 10 RLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPILLKPKSRGYIQ 69
R +++ + P+IQ+H P+++ + N + G ++ SRG +Q
Sbjct: 354 RSSEAFEWPNIQYHFLPVAI-----------NYNGTKGVQEHGFQAHVGSMRSPSRGRVQ 402
Query: 70 LNATDPLWGPPLIFPKFFTKKPDLDVFVAGMKLGASIVQTEAMQKIHARLVDVSPPQCVF 129
+ + DP P ++F + + + D F G++L I+Q A+ R ++SP V
Sbjct: 403 VKSKDPREYPSILF-NYMSSEQDWQEFRDGIRLTREIMQQPALDPYRGR--EISPGIDVQ 459
Query: 130 YKFGTWDYWACIAMQFTGTIYHPVGTCKMGPKDDPGSVVDARLRVHGVENLRVVDASIMP 189
+ + + T YHP +CKMG D +VVD + RVHG+++LRVVDASIMP
Sbjct: 460 ----SDEALDQFVREHAETAYHPSCSCKMG--TDEMAVVDGQGRVHGLQSLRVVDASIMP 513
Query: 190 KIVRGNTNAPTIMIAEKAADMIK 212
I GN NAPTIMIAEK AD I+
Sbjct: 514 IITTGNLNAPTIMIAEKIADKIR 536
>sp|Q8CMY2|BETA_STAES Choline dehydrogenase OS=Staphylococcus epidermidis (strain ATCC
12228) GN=betA PE=3 SV=1
Length = 572
Score = 103 bits (257), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 66/204 (32%), Positives = 106/204 (51%), Gaps = 19/204 (9%)
Query: 10 RLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPILLKPKSRGYIQ 69
R D +D P++ FH P++VR +P A+ + V P+ SRG ++
Sbjct: 354 RSNDDVDYPNLMFHFLPIAVR---------YDGQKAPVAHGYQVHVGPMY--SNSRGSLK 402
Query: 70 LNATDPLWGPPLIFPKFFTKKPDLDVFVAGMKLGASIVQTEAMQKIHARLVDVSPPQCVF 129
+ + DP P ++F + + K D +V +++ +I++ +AM + + P
Sbjct: 403 IKSKDPFEKPSIVF-NYLSTKEDEREWVEAIRVARNILKQKAMDPFNGGEISPGPQVQTD 461
Query: 130 YKFGTWDYWACIAMQFTGTIYHPVGTCKMGPKDDPGSVVD-ARLRVHGVENLRVVDASIM 188
+ W + T HP + KMGP DP +VVD ++VHG+ENLRVVDAS M
Sbjct: 462 EEILDW------VRKDGETALHPSCSAKMGPASDPMAVVDPLTMKVHGMENLRVVDASAM 515
Query: 189 PKIVRGNTNAPTIMIAEKAADMIK 212
P+ GN +AP +M+AEKAAD+I+
Sbjct: 516 PRTTNGNIHAPVLMLAEKAADIIR 539
>sp|A4TNP2|BETA_YERPP Choline dehydrogenase OS=Yersinia pestis (strain Pestoides F)
GN=betA PE=3 SV=1
Length = 567
Score = 103 bits (256), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 70/203 (34%), Positives = 101/203 (49%), Gaps = 20/203 (9%)
Query: 10 RLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPILLKPKSRGYIQ 69
R D+ P+IQ+H P+++ +N V G ++ SRG IQ
Sbjct: 350 RSRDAFTWPNIQYHFLPVAINYNGSNAVKEH-----------GFQAHVGSMRSPSRGRIQ 398
Query: 70 LNATDPLWGPPLIFPKFFTKKPDLDVFVAGMKLGASIVQTEAMQKIHARLVDVSPPQCVF 129
+ + DP P ++F + + + D F +++ I+ A+ R ++SP V
Sbjct: 399 VKSKDPRQHPSILF-NYMSSEQDWHEFRDAIRITREIIAQPALDPYRGR--EISPGANVQ 455
Query: 130 YKFGTWDYWACIAMQFTGTIYHPVGTCKMGPKDDPGSVVDARLRVHGVENLRVVDASIMP 189
D + T YHP +CKMG DD +VVD + RVHGV+ LRVVDASIM
Sbjct: 456 ND----DELDAFIREHAETAYHPSCSCKMG--DDKMAVVDGQGRVHGVQGLRVVDASIMS 509
Query: 190 KIVRGNTNAPTIMIAEKAADMIK 212
+I+ GN NA TIMIAEK AD I+
Sbjct: 510 QIITGNLNATTIMIAEKIADRIR 532
>sp|Q5HL11|BETA_STAEQ Choline dehydrogenase OS=Staphylococcus epidermidis (strain ATCC
35984 / RP62A) GN=betA PE=3 SV=1
Length = 572
Score = 103 bits (256), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 65/204 (31%), Positives = 106/204 (51%), Gaps = 19/204 (9%)
Query: 10 RLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPILLKPKSRGYIQ 69
R D +D P++ FH P++VR +P A+ + V P+ SRG ++
Sbjct: 354 RSNDDVDYPNLMFHFLPIAVR---------YDGQKAPVAHGYQVHVGPMY--SNSRGSLK 402
Query: 70 LNATDPLWGPPLIFPKFFTKKPDLDVFVAGMKLGASIVQTEAMQKIHARLVDVSPPQCVF 129
+ + DP P ++F + + K D ++ +++ +I++ +AM + + P
Sbjct: 403 IKSKDPFEKPSIVF-NYLSTKEDEREWIEAIRVARNILKQKAMDPFNGGEISPGPQVQTD 461
Query: 130 YKFGTWDYWACIAMQFTGTIYHPVGTCKMGPKDDPGSVVD-ARLRVHGVENLRVVDASIM 188
+ W + T HP + KMGP DP +VVD ++VHG+ENLRVVDAS M
Sbjct: 462 EEILDW------VRKDGETALHPSCSAKMGPASDPMAVVDPLTMKVHGMENLRVVDASAM 515
Query: 189 PKIVRGNTNAPTIMIAEKAADMIK 212
P+ GN +AP +M+AEKAAD+I+
Sbjct: 516 PRTTNGNIHAPVLMLAEKAADIIR 539
>sp|Q4ZM63|BETA_PSEU2 Choline dehydrogenase OS=Pseudomonas syringae pv. syringae (strain
B728a) GN=betA PE=3 SV=1
Length = 568
Score = 102 bits (255), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 69/203 (33%), Positives = 105/203 (51%), Gaps = 20/203 (9%)
Query: 10 RLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPILLKPKSRGYIQ 69
R +++ + P+IQ+H P+++ + N + G ++ SRG +Q
Sbjct: 354 RSSEAFEWPNIQYHFLPVAI-----------NYNGTKGVQEHGFQAHVGSMRSPSRGRVQ 402
Query: 70 LNATDPLWGPPLIFPKFFTKKPDLDVFVAGMKLGASIVQTEAMQKIHARLVDVSPPQCVF 129
+ + DP P ++F + + D F G++L I+Q A+ R ++SP V
Sbjct: 403 VKSKDPREYPSILF-NYMASEQDWQEFRDGIRLTREIMQQPALDPYRGR--EISPGIDV- 458
Query: 130 YKFGTWDYWACIAMQFTGTIYHPVGTCKMGPKDDPGSVVDARLRVHGVENLRVVDASIMP 189
+ + + T YHP +CKMG D +VVD + RVHG+++LRVVDASIMP
Sbjct: 459 ---QSDEALDQFVREHAETAYHPSCSCKMG--TDEMAVVDGQGRVHGLQSLRVVDASIMP 513
Query: 190 KIVRGNTNAPTIMIAEKAADMIK 212
I GN NAPTIMIAEK AD I+
Sbjct: 514 IITTGNLNAPTIMIAEKIADKIR 536
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.139 0.442
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,802,927
Number of Sequences: 539616
Number of extensions: 3331068
Number of successful extensions: 6431
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 6009
Number of HSP's gapped (non-prelim): 161
length of query: 219
length of database: 191,569,459
effective HSP length: 113
effective length of query: 106
effective length of database: 130,592,851
effective search space: 13842842206
effective search space used: 13842842206
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)