Query psy8945
Match_columns 219
No_of_seqs 180 out of 1507
Neff 7.9
Searched_HMMs 46136
Date Fri Aug 16 23:27:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8945.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8945hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1238|consensus 100.0 2.7E-54 5.8E-59 394.6 18.7 209 6-217 397-618 (623)
2 PF05199 GMC_oxred_C: GMC oxid 100.0 5.9E-42 1.3E-46 265.5 11.6 143 62-207 1-144 (144)
3 TIGR01810 betA choline dehydro 100.0 4.9E-41 1.1E-45 311.0 19.8 158 51-215 373-530 (532)
4 PRK02106 choline dehydrogenase 100.0 1.7E-39 3.7E-44 302.5 19.9 156 51-215 380-535 (560)
5 PLN02785 Protein HOTHEAD 100.0 8.2E-39 1.8E-43 298.5 16.4 151 54-215 416-580 (587)
6 COG2303 BetA Choline dehydroge 100.0 1E-34 2.2E-39 269.2 15.0 191 2-214 343-536 (542)
7 TIGR02462 pyranose_ox pyranose 99.9 5.1E-23 1.1E-27 190.2 14.5 131 62-216 412-544 (544)
8 COG1252 Ndh NADH dehydrogenase 87.7 1.1 2.3E-05 40.8 5.2 51 166-216 280-332 (405)
9 PTZ00318 NADH dehydrogenase-li 81.7 3.1 6.6E-05 37.7 5.4 49 167-215 298-347 (424)
10 TIGR03169 Nterm_to_SelD pyridi 78.9 3.8 8.3E-05 36.0 5.0 49 167-215 261-310 (364)
11 KOG2495|consensus 73.8 4.1 8.9E-05 37.3 3.7 41 167-213 349-390 (491)
12 TIGR02734 crtI_fam phytoene de 68.0 16 0.00036 33.6 6.5 77 131-217 418-494 (502)
13 TIGR02733 desat_CrtD C-3',4' d 55.8 1.7E+02 0.0036 26.9 11.6 73 131-214 419-491 (492)
14 PF13807 GNVR: G-rich domain o 52.6 33 0.00071 23.5 4.4 33 176-208 37-69 (82)
15 PRK04176 ribulose-1,5-biphosph 49.2 56 0.0012 27.5 6.1 52 164-217 202-256 (257)
16 PRK12839 hypothetical protein; 44.6 33 0.00072 32.5 4.4 66 149-219 502-572 (572)
17 TIGR02730 carot_isom carotene 36.6 57 0.0012 30.0 4.6 37 175-215 456-492 (493)
18 TIGR01292 TRX_reduct thioredox 31.2 66 0.0014 26.8 3.8 43 167-214 256-299 (300)
19 PRK12844 3-ketosteroid-delta-1 30.6 1.1E+02 0.0023 29.0 5.4 51 168-218 493-553 (557)
20 PRK12837 3-ketosteroid-delta-1 29.0 76 0.0017 29.5 4.1 60 149-213 446-510 (513)
21 PRK12843 putative FAD-binding 27.7 1.7E+02 0.0037 27.7 6.2 49 166-216 520-573 (578)
22 TIGR00292 thiazole biosynthesi 27.3 99 0.0022 26.0 4.2 51 164-216 201-254 (254)
23 PRK07121 hypothetical protein; 27.2 1.4E+02 0.003 27.5 5.5 49 166-214 432-490 (492)
24 PRK12842 putative succinate de 26.4 1.1E+02 0.0024 28.9 4.8 62 149-215 501-567 (574)
25 PRK09754 phenylpropionate diox 25.3 74 0.0016 28.3 3.2 44 167-212 258-307 (396)
26 PRK12845 3-ketosteroid-delta-1 23.1 1.1E+02 0.0024 29.0 4.1 46 166-213 513-563 (564)
27 PRK07057 sdhA succinate dehydr 22.8 1.5E+02 0.0033 28.2 5.0 49 166-214 363-425 (591)
28 PRK08275 putative oxidoreducta 22.3 1.3E+02 0.0029 28.2 4.4 55 149-213 347-402 (554)
29 PLN00128 Succinate dehydrogena 21.6 2.3E+02 0.005 27.3 5.9 47 168-214 405-465 (635)
30 cd02960 AGR Anterior Gradient 21.1 74 0.0016 24.2 2.0 26 84-109 103-128 (130)
No 1
>KOG1238|consensus
Probab=100.00 E-value=2.7e-54 Score=394.64 Aligned_cols=209 Identities=44% Similarity=0.700 Sum_probs=187.7
Q ss_pred eeeecc------cCCCCCCCEEEEeccccccccc-------CCCccCCCCCCCCCCCCCcEEEEEEeeccCCCeEEEcCC
Q psy8945 6 VECGRL------ADSLDVPDIQFHHDPMSVRDWI-------TNPVNASSTNMSPFAYYDGITVRPILLKPKSRGYIQLNA 72 (219)
Q Consensus 6 ~~~~~~------~~~~~~Pdiql~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~t~~~~l~~P~SrG~V~L~s 72 (219)
+|+.+| ..+.+|||+|+++.+.....+- ..++| ...+.+....+.|.++..+++|+|||+|+|+|
T Consensus 397 ~e~~~f~~t~~~~~~~~~PD~~~~~~~~~~~~~~~~~~~~~~~~~y--~~~~~~~~~~~~~~i~~~~l~P~SrG~l~L~s 474 (623)
T KOG1238|consen 397 VETLGFINTVSSNLSLDWPDIELHFVAGSLSSDGLTALRKALGEIY--QALFGELTNSDSFVIFPKLLRPKSRGRLKLRS 474 (623)
T ss_pred ceeeEEeccccccCcCCCCCeeEEeccccccccchhhhhhhcchHH--HHhhhhhhcCceeEEeehhcCCCccceEEecC
Confidence 688888 3366899999999987776551 11222 22233344455799999999999999999999
Q ss_pred CCCCCCCceeeeCCCCCHHHHHHHHHHHHHHHHHHhhHHHHHhhhcccccCCCCcccccCCCHHHHHHHHhhccCccccc
Q psy8945 73 TDPLWGPPLIFPKFFTKKPDLDVFVAGMKLGASIVQTEAMQKIHARLVDVSPPQCVFYKFGTWDYWACIAMQFTGTIYHP 152 (219)
Q Consensus 73 ~dp~~~~P~I~~~yl~~~~D~~~l~~g~~~~~~i~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~~~~~~~~H~ 152 (219)
+|| .+.|+|++|||++|+|++.+++|++.+.++.++++|++++.+++..+.|+|+.....+|++|+||+|.++.+.||+
T Consensus 475 ~nP-~~~P~I~~NY~~~p~Dv~~~vegi~~~~~l~~s~af~~~~~r~~~~~~~~c~~~~~~sd~yw~c~~R~~~~TiyH~ 553 (623)
T KOG1238|consen 475 TNP-RDNPLITPNYFTHPEDVATLVEGIRTIIRLSNSKAFQRFGARLWKKPVPGCDLLAFLSDAYWECFCRHTVVTIYHY 553 (623)
T ss_pred CCC-CcCceeccCcCCCHHHHHHHHHHHHHHHHHHcCHHHHHhcchhccccCCCcccccCCCHHHHHHHHHhccceeecc
Confidence 999 9999999999999999999999999999999999999999999988899999888999999999999999999999
Q ss_pred CCccccCCCCCCCCcccCCCeEeccCCeEEecCCCCCCCCCCCChHHHHHHHHHHHHHHHHHhcc
Q psy8945 153 VGTCKMGPKDDPGSVVDARLRVHGVENLRVVDASIMPKIVRGNTNAPTIMIAEKAADMIKEDWIL 217 (219)
Q Consensus 153 ~GTc~MG~~~d~~~VVD~~lrV~Gv~nLrV~DaSv~P~~~~~np~~t~~~iaer~a~~i~~~~~~ 217 (219)
+|||+||+..|+++|||+++|||||+|||||||||||.+|++|||+|+||||||+|++||++|..
T Consensus 554 ~GtckMGp~~D~~aVVD~~lrV~Gv~~LRVVDaSimP~~psgN~nA~v~MIgek~ad~Ik~~~~~ 618 (623)
T KOG1238|consen 554 SGTCKMGPSSDPTAVVDPQLRVHGVRGLRVVDASIMPESPSGNPNAPVMMIGEKAADMIKEEWLA 618 (623)
T ss_pred CCceEeCCccCCCcccCCcceeccccCceEeeccccCCCCCCCccHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999853
No 2
>PF05199 GMC_oxred_C: GMC oxidoreductase; InterPro: IPR007867 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. The function of this C-terminal conserved domain is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0055114 oxidation-reduction process; PDB: 3BG7_F 2IGM_D 3BLY_A 3BG6_H 3LSK_A 2IGO_A 3K4B_A 3K4L_B 2IGN_B 3K4M_H ....
Probab=100.00 E-value=5.9e-42 Score=265.49 Aligned_cols=143 Identities=40% Similarity=0.679 Sum_probs=117.0
Q ss_pred cCCCeEEEcCCCCCCCCCceeeeCCCCCHHHHHHHHHHHHHHHHHHhhHHHHHhhhcccc-cCCCCcccccCCCHHHHHH
Q psy8945 62 PKSRGYIQLNATDPLWGPPLIFPKFFTKKPDLDVFVAGMKLGASIVQTEAMQKIHARLVD-VSPPQCVFYKFGTWDYWAC 140 (219)
Q Consensus 62 P~SrG~V~L~s~dp~~~~P~I~~~yl~~~~D~~~l~~g~~~~~~i~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~ 140 (219)
|+|||+|+|+++|| ++.|.|+++|+.++.|++.++++++.+++|+++. +++++..... ...+.+......++++|++
T Consensus 1 P~S~G~V~L~~~d~-~~~p~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (144)
T PF05199_consen 1 PKSRGRVTLDSSDP-FGQPLIDPNYLSDPRDLEALREGIKRARRILRAA-FEEIGAGELLPGPSPFCPDASLDSDEDLEC 78 (144)
T ss_dssp -SS-BEEEESSSST-TSEEEEE--TTSSHHHHHHHHHHHHHHHHHHTSG-GGGTEEEEEESCGCSCCGCSTTTCHHHHHH
T ss_pred CCCCcEEEeCCCCC-CCCcEEEeCCCCCHHHHHHHHHHHHHHHHHHhhh-hcccccccccccccccccccccccchhhhh
Confidence 89999999999999 9999999999999999999999999999999987 7666543322 1122222234567889999
Q ss_pred HHhhccCcccccCCccccCCCCCCCCcccCCCeEeccCCeEEecCCCCCCCCCCCChHHHHHHHHHH
Q psy8945 141 IAMQFTGTIYHPVGTCKMGPKDDPGSVVDARLRVHGVENLRVVDASIMPKIVRGNTNAPTIMIAEKA 207 (219)
Q Consensus 141 ~i~~~~~~~~H~~GTc~MG~~~d~~~VVD~~lrV~Gv~nLrV~DaSv~P~~~~~np~~t~~~iaer~ 207 (219)
|+++...+.+|++||||||++++ .+|||++|||||++||||+||||||+.+++||++|+|||||||
T Consensus 79 ~~~~~~~~~~H~~Gt~~mG~~~~-~~VvD~~~rv~g~~nL~V~DaSv~P~~~~~np~~t~~ala~ra 144 (144)
T PF05199_consen 79 YIRQNVGTSWHPSGTCRMGPDPD-TSVVDPDLRVHGVRNLRVADASVFPTSPGANPTLTIMALAERA 144 (144)
T ss_dssp HHHHHGEECSS-BETT-BTSSTT-TTSB-TTSBBTTSBSEEE-SGGGSSS-SSSSSHHHHHHHHHHH
T ss_pred heeeccceecccccceeccccCC-ceeECCCCCeeeeeeEEECCCCcCCCCCCcCcHHHHHHHeeCC
Confidence 99999999999999999998775 4999999999999999999999999999999999999999996
No 3
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=100.00 E-value=4.9e-41 Score=311.04 Aligned_cols=158 Identities=37% Similarity=0.589 Sum_probs=142.1
Q ss_pred CcEEEEEEeeccCCCeEEEcCCCCCCCCCceeeeCCCCCHHHHHHHHHHHHHHHHHHhhHHHHHhhhcccccCCCCcccc
Q psy8945 51 DGITVRPILLKPKSRGYIQLNATDPLWGPPLIFPKFFTKKPDLDVFVAGMKLGASIVQTEAMQKIHARLVDVSPPQCVFY 130 (219)
Q Consensus 51 ~~~t~~~~l~~P~SrG~V~L~s~dp~~~~P~I~~~yl~~~~D~~~l~~g~~~~~~i~~~~~~~~~~~~~~~~~~p~~~~~ 130 (219)
..+++.+..++|+|||+|+|+++|| ++.|.|++||+.+|.|++.|+++++.+++++++.+++.+...+. .|+.
T Consensus 373 ~~~~~~~~~~~P~srG~V~L~s~dp-~~~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~---~p~~--- 445 (532)
T TIGR01810 373 HGFQVHVGPMYSNSRGHVKIKSKDP-FEKPEIVFNYMSHEEDWREFREAIRVTREILKQKALDPYRGGEI---SPGP--- 445 (532)
T ss_pred CcEEEEEeecCCCCceEEEecCCCC-ccCceeccccCCCHHHHHHHHHHHHHHHHHHcCcchhhcccccc---CCCC---
Confidence 3577777888999999999999999 99999999999999999999999999999999888877643322 2332
Q ss_pred cCCCHHHHHHHHhhccCcccccCCccccCCCCCCCCcccCCCeEeccCCeEEecCCCCCCCCCCCChHHHHHHHHHHHHH
Q psy8945 131 KFGTWDYWACIAMQFTGTIYHPVGTCKMGPKDDPGSVVDARLRVHGVENLRVVDASIMPKIVRGNTNAPTIMIAEKAADM 210 (219)
Q Consensus 131 ~~~~~~~~~~~i~~~~~~~~H~~GTc~MG~~~d~~~VVD~~lrV~Gv~nLrV~DaSv~P~~~~~np~~t~~~iaer~a~~ 210 (219)
...++++|++|+|+...+.+|++||||||++++++||||++||||||+|||||||||||.++++||++|+||||||+||+
T Consensus 446 ~~~~d~~~~~~ir~~~~~~~H~~GTcrMG~~~~~~~VVD~~~rV~Gv~nLrVvDaSv~P~~~~~n~~~t~~aiaeraAd~ 525 (532)
T TIGR01810 446 EVQTDEEIDEFVRRHGETALHPCGTCKMGPASDEMSVVDPETRVHGMEGLRVVDASIMPRITNGNLNAPVIMMGEKAADI 525 (532)
T ss_pred CCCCHHHHHHHHhhhcccccccccceeCCCcccCCCccCCCCeEeccCCcEEeeeccCCCCCCCccHHHHHHHHHHHHHH
Confidence 25689999999999999999999999999855678999999999999999999999999999999999999999999999
Q ss_pred HHHHh
Q psy8945 211 IKEDW 215 (219)
Q Consensus 211 i~~~~ 215 (219)
|+++.
T Consensus 526 I~~~~ 530 (532)
T TIGR01810 526 IRGKK 530 (532)
T ss_pred HhccC
Confidence 99864
No 4
>PRK02106 choline dehydrogenase; Validated
Probab=100.00 E-value=1.7e-39 Score=302.48 Aligned_cols=156 Identities=41% Similarity=0.621 Sum_probs=141.1
Q ss_pred CcEEEEEEeeccCCCeEEEcCCCCCCCCCceeeeCCCCCHHHHHHHHHHHHHHHHHHhhHHHHHhhhcccccCCCCcccc
Q psy8945 51 DGITVRPILLKPKSRGYIQLNATDPLWGPPLIFPKFFTKKPDLDVFVAGMKLGASIVQTEAMQKIHARLVDVSPPQCVFY 130 (219)
Q Consensus 51 ~~~t~~~~l~~P~SrG~V~L~s~dp~~~~P~I~~~yl~~~~D~~~l~~g~~~~~~i~~~~~~~~~~~~~~~~~~p~~~~~ 130 (219)
..|++.+.+++|+|||+|+|+++|| ++.|+|+++|+.+|.|++.+.++++++++++++.+++.+...+. .|++
T Consensus 380 ~~~~~~~~~~~P~srG~V~L~s~d~-~~~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~---~p~~--- 452 (560)
T PRK02106 380 HGFQAHVGPMRSPSRGSVKLKSADP-RAHPSILFNYMSTEQDWREFRDAIRLTREIMAQPALDPYRGREI---SPGA--- 452 (560)
T ss_pred CeEEEEEEecCCcceEEEEEeCCCC-ccCceEccccCCCHHHHHHHHHHHHHHHHHHcChhhhhcccccc---CCCc---
Confidence 4678778889999999999999999 99999999999999999999999999999999988887654332 3433
Q ss_pred cCCCHHHHHHHHhhccCcccccCCccccCCCCCCCCcccCCCeEeccCCeEEecCCCCCCCCCCCChHHHHHHHHHHHHH
Q psy8945 131 KFGTWDYWACIAMQFTGTIYHPVGTCKMGPKDDPGSVVDARLRVHGVENLRVVDASIMPKIVRGNTNAPTIMIAEKAADM 210 (219)
Q Consensus 131 ~~~~~~~~~~~i~~~~~~~~H~~GTc~MG~~~d~~~VVD~~lrV~Gv~nLrV~DaSv~P~~~~~np~~t~~~iaer~a~~ 210 (219)
...++++|++|+++...+.+|++||||||+ |++||||++|||||++||||+|+||||+++++||++|+||||||+|++
T Consensus 453 ~~~~~~~~~~~i~~~~~~~~H~~GTcrMG~--d~~sVVD~~~rV~Gv~nLrVvDaSv~P~~~~~np~~ti~aiaeraAd~ 530 (560)
T PRK02106 453 DVQTDEEIDAFVREHAETAYHPSCTCKMGT--DPMAVVDPEGRVHGVEGLRVVDASIMPTITNGNLNAPTIMIAEKAADL 530 (560)
T ss_pred ccCCHHHHHHHHHhccCcCcccCCCeecCC--CCCeeECCCCEEeccCCeEEeeccccCCCCCcchHHHHHHHHHHHHHH
Confidence 246788999999999999999999999997 348999999999999999999999999999999999999999999999
Q ss_pred HHHHh
Q psy8945 211 IKEDW 215 (219)
Q Consensus 211 i~~~~ 215 (219)
|++++
T Consensus 531 I~~~~ 535 (560)
T PRK02106 531 IRGRT 535 (560)
T ss_pred HhccC
Confidence 99876
No 5
>PLN02785 Protein HOTHEAD
Probab=100.00 E-value=8.2e-39 Score=298.52 Aligned_cols=151 Identities=24% Similarity=0.293 Sum_probs=134.2
Q ss_pred EEEEEeeccCCCeEEEcCCCCCCCCCceeeeCCCCCHHHHHHHHHHHHHHHHHHhhHHHHHhhhccccc-----------
Q psy8945 54 TVRPILLKPKSRGYIQLNATDPLWGPPLIFPKFFTKKPDLDVFVAGMKLGASIVQTEAMQKIHARLVDV----------- 122 (219)
Q Consensus 54 t~~~~l~~P~SrG~V~L~s~dp~~~~P~I~~~yl~~~~D~~~l~~g~~~~~~i~~~~~~~~~~~~~~~~----------- 122 (219)
.+...+++|+|||+|+|+|+|| .+.|.|++||+.+|.|++.++++++.+++++++++++.+...+...
T Consensus 416 ~~~~~l~~P~SrG~V~L~ssdp-~~~P~i~~ny~~~p~Dl~~~~~g~r~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (587)
T PLN02785 416 FILEKIAGPISTGHLSLINTNV-DDNPSVTFNYFKHPQDLQRCVYGIRTIEKIVKTNHFTNFTQCDKQTMEKVLNMSVKA 494 (587)
T ss_pred eEEEEecCCCcceEEEecCCCC-CcCCccccccCCCHHHHHHHHHHHHHHHHHHcChhhhhhcccccccccccccccccc
Confidence 3456788999999999999999 9999999999999999999999999999999999988875322110
Q ss_pred ---CCCCcccccCCCHHHHHHHHhhccCcccccCCccccCCCCCCCCcccCCCeEeccCCeEEecCCCCCCCCCCCChHH
Q psy8945 123 ---SPPQCVFYKFGTWDYWACIAMQFTGTIYHPVGTCKMGPKDDPGSVVDARLRVHGVENLRVVDASIMPKIVRGNTNAP 199 (219)
Q Consensus 123 ---~~p~~~~~~~~~~~~~~~~i~~~~~~~~H~~GTc~MG~~~d~~~VVD~~lrV~Gv~nLrV~DaSv~P~~~~~np~~t 199 (219)
..|. ...++++|++|+|++..+.||++|||+|| +|||+++|||||+|||||||||||.+|++|||+|
T Consensus 495 ~~~~~p~----~~~~d~~l~~~ir~~~~t~~H~~GTc~MG------~VVD~~lrV~GV~~LRVvDaSi~P~~p~~np~at 564 (587)
T PLN02785 495 NINLIPK----HTNDTKSLEQFCKDTVITIWHYHGGCHVG------KVVDQNYKVLGVSRLRVIDGSTFDESPGTNPQAT 564 (587)
T ss_pred ccccCCC----CCCCHHHHHHHHHHhcccccCCcccccCC------CeECCCCeEeccCCeEEeecccCCCCCCCccHHH
Confidence 0121 13578899999999999999999999999 6999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q psy8945 200 TIMIAEKAADMIKEDW 215 (219)
Q Consensus 200 ~~~iaer~a~~i~~~~ 215 (219)
+||||||+|++|+++.
T Consensus 565 v~miaer~A~~Il~~~ 580 (587)
T PLN02785 565 VMMMGRYMGVKILRER 580 (587)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999999875
No 6
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=100.00 E-value=1e-34 Score=269.17 Aligned_cols=191 Identities=36% Similarity=0.557 Sum_probs=159.9
Q ss_pred cccceeee--cccCCCCCCCEEEEecccccccccCCCccCCCCCCCCCCCCCcEEEEEEeeccCCCeEEEcCCCCCCCCC
Q psy8945 2 VLSDVECG--RLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPILLKPKSRGYIQLNATDPLWGP 79 (219)
Q Consensus 2 ~~~~~~~~--~~~~~~~~Pdiql~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~P~SrG~V~L~s~dp~~~~ 79 (219)
.++.+|.+ +......+||+|+++.+..... . .....+.|++.....+|.|||.|++++.|| ...
T Consensus 343 ~~~~~~~gf~~~~~~~~~p~~~~~~~~~~~~~-----------~--~~~~~~~~~~~~~~~rp~srg~v~~~~~d~-~~~ 408 (542)
T COG2303 343 ATNHFEGGFVRSGPAGEYPDGQYHFAPLPLAI-----------R--AAGAEHGFTLHVGPMRPKSRGSVTLRSPDP-DNR 408 (542)
T ss_pred ccccccccccccCccccCCCcccccccccccc-----------c--ccccCCccEEeeccCCCccccceecCCCCC-cCC
Confidence 35667777 2244556899999998765421 0 123457999999999999999999999999 999
Q ss_pred ceeeeCCCCCHHHHHHHHHHHHHHHHHHhhHHHHHhhhcccccCCCCcccccCCCHHHHHHHHhhccCcccccCCccccC
Q psy8945 80 PLIFPKFFTKKPDLDVFVAGMKLGASIVQTEAMQKIHARLVDVSPPQCVFYKFGTWDYWACIAMQFTGTIYHPVGTCKMG 159 (219)
Q Consensus 80 P~I~~~yl~~~~D~~~l~~g~~~~~~i~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~~~~~~~~H~~GTc~MG 159 (219)
|.|++||++++.|++.+.++++..+++..+..+......+.. |+. ...+++++..|++....+.+|++||||||
T Consensus 409 p~i~~~~~~~~~d~~~~~~~~~~~r~i~~~~~~~~~~~~e~~---~~~---~~~~~~~~~~~~~~~~~t~~H~~GT~rMG 482 (542)
T COG2303 409 PVIDPNYLSAEGDRAIFRAGIRLTREIIGQPALDARRKAELA---PGP---RVTTDEDISAAIRFLARTAYHPMGTCRMG 482 (542)
T ss_pred cccCccccCchhHHHHHHHHHHHHHHHhcCccchhhHHHhhc---CCC---ccccHHHHHHHHHhccCccccccccccCC
Confidence 999999999999999999999999999987776665544432 322 25678899999999999999999999999
Q ss_pred CCCCCCCccc-CCCeEeccCCeEEecCCCCCCCCCCCChHHHHHHHHHHHHHHHHH
Q psy8945 160 PKDDPGSVVD-ARLRVHGVENLRVVDASIMPKIVRGNTNAPTIMIAEKAADMIKED 214 (219)
Q Consensus 160 ~~~d~~~VVD-~~lrV~Gv~nLrV~DaSv~P~~~~~np~~t~~~iaer~a~~i~~~ 214 (219)
.+ +..||| ++|||||++||||+|||+||+++++||++|++|||||+|++|+++
T Consensus 483 ~D--p~~~V~d~~lrv~g~~nL~VvDaSvmPt~~~~Np~~ti~ala~raA~~I~~~ 536 (542)
T COG2303 483 SD--PAAVVDDPYLRVHGLENLRVVDASVMPTSTGVNPNLTIIALAERAADHILGD 536 (542)
T ss_pred CC--chhhccccccccccCCCeEEeCcccCcCccCCCccHhHHHHHHHHHHHHhhc
Confidence 54 345555 999999999999999999999999999999999999999999974
No 7
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=99.90 E-value=5.1e-23 Score=190.17 Aligned_cols=131 Identities=22% Similarity=0.247 Sum_probs=108.7
Q ss_pred cCCCeEEEcCC--CCCCCCCceeeeCCCCCHHHHHHHHHHHHHHHHHHhhHHHHHhhhcccccCCCCcccccCCCHHHHH
Q psy8945 62 PKSRGYIQLNA--TDPLWGPPLIFPKFFTKKPDLDVFVAGMKLGASIVQTEAMQKIHARLVDVSPPQCVFYKFGTWDYWA 139 (219)
Q Consensus 62 P~SrG~V~L~s--~dp~~~~P~I~~~yl~~~~D~~~l~~g~~~~~~i~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 139 (219)
|...++|+|+. +|. ++.|....+|-.++.|++.+..+.+.+.++++ .++... +.. ..
T Consensus 412 P~~~NrV~Ld~~~~D~-~G~P~~~i~~~~~~~d~~~~~~~~~~~~~i~~-----~~G~~~-----~~~------~~---- 470 (544)
T TIGR02462 412 PKEENKLVFQDKVTDT-YNMPQPTFDFRFSAADSKRARRMMTDMCNVAA-----KIGGYL-----PGS------LP---- 470 (544)
T ss_pred CCCCCeEEcCCCCcCC-CCCeeEEEEEeCCHHHHHHHHHHHHHHHHHHH-----HcCCCc-----ccc------cc----
Confidence 89999999976 599 99999999999999999999999999888743 344321 110 00
Q ss_pred HHHhhccCcccccCCccccCCCCCCCCcccCCCeEeccCCeEEecCCCCCCCCCCCChHHHHHHHHHHHHHHHHHhc
Q psy8945 140 CIAMQFTGTIYHPVGTCKMGPKDDPGSVVDARLRVHGVENLRVVDASIMPKIVRGNTNAPTIMIAEKAADMIKEDWI 216 (219)
Q Consensus 140 ~~i~~~~~~~~H~~GTc~MG~~~d~~~VVD~~lrV~Gv~nLrV~DaSv~P~~~~~np~~t~~~iaer~a~~i~~~~~ 216 (219)
.|. ....++|++||||||.++ .++|||++|||||++||||+|+|+||+.+++||++|+|++|+|+|+.|+++++
T Consensus 471 ~~~--~~~~~~H~~Gt~rMG~dp-~~sVvd~~~rv~g~~NL~V~d~s~~Pt~~~~nPtlTi~ala~r~a~~i~~~~~ 544 (544)
T TIGR02462 471 QFM--EPGLALHLAGTTRIGFDE-QTTVANTDSKVHNFKNLYVGGNGNIPTAFGANPTLTSMCYAIKSAEYIINNFG 544 (544)
T ss_pred ccc--CCCccccCCCCeecCCCC-CCceECCCCcEeCCCCeEEeccCcCCCCCCCCcHHHHHHHHHHHHHHHHHhcC
Confidence 011 113578999999999764 78999999999999999999999999999999999999999999999998763
No 8
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=87.73 E-value=1.1 Score=40.76 Aligned_cols=51 Identities=24% Similarity=0.160 Sum_probs=36.0
Q ss_pred CcccCCCeEeccCCeEEe-cCCCCCCCCCCCChH-HHHHHHHHHHHHHHHHhc
Q psy8945 166 SVVDARLRVHGVENLRVV-DASIMPKIVRGNTNA-PTIMIAEKAADMIKEDWI 216 (219)
Q Consensus 166 ~VVD~~lrV~Gv~nLrV~-DaSv~P~~~~~np~~-t~~~iaer~a~~i~~~~~ 216 (219)
=+||++|++.|.+++|++ |++-++..=-..|.+ ..+..|+.+|..|++++.
T Consensus 280 l~V~~~L~~~~~~~IFa~GD~A~~~~~~p~P~tAQ~A~Qqg~~~a~ni~~~l~ 332 (405)
T COG1252 280 LVVNPTLQVPGHPDIFAAGDCAAVIDPRPVPPTAQAAHQQGEYAAKNIKARLK 332 (405)
T ss_pred EEeCCCcccCCCCCeEEEeccccCCCCCCCCChhHHHHHHHHHHHHHHHHHhc
Confidence 479999999999999999 999998750011222 234456677777777653
No 9
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=81.70 E-value=3.1 Score=37.72 Aligned_cols=49 Identities=16% Similarity=0.105 Sum_probs=36.6
Q ss_pred cccCCCeEeccCCeEEe-cCCCCCCCCCCCChHHHHHHHHHHHHHHHHHh
Q psy8945 167 VVDARLRVHGVENLRVV-DASIMPKIVRGNTNAPTIMIAEKAADMIKEDW 215 (219)
Q Consensus 167 VVD~~lrV~Gv~nLrV~-DaSv~P~~~~~np~~t~~~iaer~a~~i~~~~ 215 (219)
.||+.+|+.+.+|+|++ |++-++..+.......++.-|..+|+.|.+++
T Consensus 298 ~Vd~~l~~~~~~~IfAiGD~a~~~~~~~~~~~~~A~~qg~~~A~ni~~~l 347 (424)
T PTZ00318 298 SVDDHLRVKPIPNVFALGDCAANEERPLPTLAQVASQQGVYLAKEFNNEL 347 (424)
T ss_pred EeCCCcccCCCCCEEEEeccccCCCCCCCCchHHHHHHHHHHHHHHHHHh
Confidence 48999999999999988 88887654333333445667888888887765
No 10
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=78.85 E-value=3.8 Score=35.95 Aligned_cols=49 Identities=14% Similarity=0.154 Sum_probs=35.6
Q ss_pred cccCCCeEeccCCeEEe-cCCCCCCCCCCCChHHHHHHHHHHHHHHHHHh
Q psy8945 167 VVDARLRVHGVENLRVV-DASIMPKIVRGNTNAPTIMIAEKAADMIKEDW 215 (219)
Q Consensus 167 VVD~~lrV~Gv~nLrV~-DaSv~P~~~~~np~~t~~~iaer~a~~i~~~~ 215 (219)
.||..+|..+.+|+|++ |++.++..+.......++.-|..+|..|.+.+
T Consensus 261 ~vd~~l~~~~~~~Iya~GD~~~~~~~~~~~~~~~A~~~g~~~a~ni~~~l 310 (364)
T TIGR03169 261 RVDPTLQSLSHPHVFAAGDCAVITDAPRPKAGVYAVRQAPILAANLRASL 310 (364)
T ss_pred EECCccccCCCCCEEEeeeeeecCCCCCCCchHHHHHhHHHHHHHHHHHh
Confidence 57888888899999999 88877755444344455667777787776654
No 11
>KOG2495|consensus
Probab=73.79 E-value=4.1 Score=37.32 Aligned_cols=41 Identities=29% Similarity=0.420 Sum_probs=28.6
Q ss_pred cccCCCeEeccCCeEEe-cCCCCCCCCCCCChHHHHHHHHHHHHHHHH
Q psy8945 167 VVDARLRVHGVENLRVV-DASIMPKIVRGNTNAPTIMIAEKAADMIKE 213 (219)
Q Consensus 167 VVD~~lrV~Gv~nLrV~-DaSv~P~~~~~np~~t~~~iaer~a~~i~~ 213 (219)
.||+.|||.|++|++-+ |++.+|... | +.-+|++=+..+.+
T Consensus 349 ~vDE~LrV~G~~nvfAiGDca~~~~~~---~---tAQVA~QqG~yLAk 390 (491)
T KOG2495|consen 349 AVDEWLRVKGVKNVFAIGDCADQRGLK---P---TAQVAEQQGAYLAK 390 (491)
T ss_pred eeeceeeccCcCceEEeccccccccCc---c---HHHHHHHHHHHHHH
Confidence 79999999999999977 888555433 2 34455555554444
No 12
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=68.00 E-value=16 Score=33.56 Aligned_cols=77 Identities=16% Similarity=0.074 Sum_probs=45.2
Q ss_pred cCCCHHHHHHHHhhccCcccccCCccccCCCCCCCCcccCCCeEeccCCeEEecCCCCCCCCCCCChHHHHHHHHHHHHH
Q psy8945 131 KFGTWDYWACIAMQFTGTIYHPVGTCKMGPKDDPGSVVDARLRVHGVENLRVVDASIMPKIVRGNTNAPTIMIAEKAADM 210 (219)
Q Consensus 131 ~~~~~~~~~~~i~~~~~~~~H~~GTc~MG~~~d~~~VVD~~lrV~Gv~nLrV~DaSv~P~~~~~np~~t~~~iaer~a~~ 210 (219)
.+.|...|+.|......+.+|..-|... .+-.-+..+-..++|||.+.+|++|- .=...+++=|..+|+.
T Consensus 418 ~~~TP~t~~~~~~~~~G~~~G~~~~~~q------~~~~rp~~~~t~i~gLyl~G~~~~pG----~Gv~g~~~sg~~~a~~ 487 (502)
T TIGR02734 418 RTFTPADFRDRYNAWLGSAFSLEHTLTQ------SAWFRPHNRDRKIDNLYLVGAGTHPG----AGVPGVLGSAKATAKL 487 (502)
T ss_pred EEcCHHHHHHhcCCCCccccchhhchhh------cccCCCCCCCCCCCCEEEeCCCCCCC----CCHHHHHHHHHHHHHH
Confidence 3567888887754444444444332211 01011112345799999999999883 2223455677888898
Q ss_pred HHHHhcc
Q psy8945 211 IKEDWIL 217 (219)
Q Consensus 211 i~~~~~~ 217 (219)
|.++.+.
T Consensus 488 il~~~~~ 494 (502)
T TIGR02734 488 MLGDLAP 494 (502)
T ss_pred HHhhccC
Confidence 8887653
No 13
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=55.77 E-value=1.7e+02 Score=26.86 Aligned_cols=73 Identities=15% Similarity=-0.012 Sum_probs=43.9
Q ss_pred cCCCHHHHHHHHhhccCcccccCCccccCCCCCCCCcccCCCeEeccCCeEEecCCCCCCCCCCCChHHHHHHHHHHHHH
Q psy8945 131 KFGTWDYWACIAMQFTGTIYHPVGTCKMGPKDDPGSVVDARLRVHGVENLRVVDASIMPKIVRGNTNAPTIMIAEKAADM 210 (219)
Q Consensus 131 ~~~~~~~~~~~i~~~~~~~~H~~GTc~MG~~~d~~~VVD~~lrV~Gv~nLrV~DaSv~P~~~~~np~~t~~~iaer~a~~ 210 (219)
++.|...|+.|......+.+|..=+.... +.-....+ ..++|||.+.+|++|- .=...+++=|..+|+.
T Consensus 419 ~v~TP~t~~~~~~~~~G~~~G~~~~~~q~------~~~~~~~~-t~i~gLyl~G~~~~pG----~Gv~g~~~sg~~~a~~ 487 (492)
T TIGR02733 419 ELATPRTFERWTGRPQGIVGGLGQRPSTF------GPFGLSSR-TPVKGLWLCGDSIHPG----EGTAGVSYSALMVVRQ 487 (492)
T ss_pred EccCCchHHHHhCCCCcEECCCCcCcccc------CCcCCCCC-CCCCCeEEecCccCCC----CcHHHHHHHHHHHHHH
Confidence 45677888888665555555554332211 11011123 3799999999999883 2223455677888888
Q ss_pred HHHH
Q psy8945 211 IKED 214 (219)
Q Consensus 211 i~~~ 214 (219)
|.+.
T Consensus 488 i~~~ 491 (492)
T TIGR02733 488 ILAS 491 (492)
T ss_pred Hhhc
Confidence 7653
No 14
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=52.57 E-value=33 Score=23.49 Aligned_cols=33 Identities=24% Similarity=0.332 Sum_probs=27.2
Q ss_pred ccCCeEEecCCCCCCCCCCCChHHHHHHHHHHH
Q psy8945 176 GVENLRVVDASIMPKIVRGNTNAPTIMIAEKAA 208 (219)
Q Consensus 176 Gv~nLrV~DaSv~P~~~~~np~~t~~~iaer~a 208 (219)
.+.|++|+|..+.|..|......-++++|--++
T Consensus 37 ~~~~~~ivd~A~~P~~P~~P~~~lil~l~~~~G 69 (82)
T PF13807_consen 37 NVSNVRIVDPAIVPDKPVSPKRALILALGLFLG 69 (82)
T ss_pred cCCCceeccccccCCCCCCCcHHHHHHHHHHHH
Confidence 356889999999999999888888888876544
No 15
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=49.16 E-value=56 Score=27.52 Aligned_cols=52 Identities=19% Similarity=0.128 Sum_probs=39.3
Q ss_pred CCCcccCCCeEeccCCeEEecCC---CCCCCCCCCChHHHHHHHHHHHHHHHHHhcc
Q psy8945 164 PGSVVDARLRVHGVENLRVVDAS---IMPKIVRGNTNAPTIMIAEKAADMIKEDWIL 217 (219)
Q Consensus 164 ~~~VVD~~lrV~Gv~nLrV~DaS---v~P~~~~~np~~t~~~iaer~a~~i~~~~~~ 217 (219)
...||+.-.+| ..||+|+.-+ +...+=-+.+....+.-|+|+|+.|+++++.
T Consensus 202 e~~v~~~t~~~--~~g~~~~gm~~~~~~~~~rmg~~fg~m~~sg~~~a~~~~~~~~~ 256 (257)
T PRK04176 202 EKLVVENTGEV--YPGLYVAGMAANAVHGLPRMGPIFGGMLLSGKKVAELILEKLKK 256 (257)
T ss_pred HHHHHhcCCeE--cCCEEEeehhhhhhcCCCccCchhHhHHHhHHHHHHHHHHHhhc
Confidence 45799999999 7999998644 3443334566666667899999999998865
No 16
>PRK12839 hypothetical protein; Provisional
Probab=44.64 E-value=33 Score=32.54 Aligned_cols=66 Identities=14% Similarity=0.103 Sum_probs=43.1
Q ss_pred ccccCCccccCCCCCCCCcccCCCeEeccCCeEEec---CCCCCC--CCCCCChHHHHHHHHHHHHHHHHHhccCC
Q psy8945 149 IYHPVGTCKMGPKDDPGSVVDARLRVHGVENLRVVD---ASIMPK--IVRGNTNAPTIMIAEKAADMIKEDWILDR 219 (219)
Q Consensus 149 ~~H~~GTc~MG~~~d~~~VVD~~lrV~Gv~nLrV~D---aSv~P~--~~~~np~~t~~~iaer~a~~i~~~~~~~~ 219 (219)
.+|-+|..+.-. ..-|+|.++++ ++|||.+. +|++-. ..+++....++..|..+++.+.+.-+..|
T Consensus 502 ~~~T~GGl~in~---~~qVLd~dg~p--IpGLYAAG~~~gg~~g~~Y~~~G~~lg~a~~fGriAg~~aA~~~~~~~ 572 (572)
T PRK12839 502 SFGTFAGLVADG---KSRVLRDDDTP--IDGLYAAGNDQASVMGGHYPSGGINLGPAMTFGYIAGRELAGSTGVER 572 (572)
T ss_pred ccccCCCccCCC---CceEECCCCCC--cCCceeccccccccccCCCCCcccchhHHHHHHHHHHHHHHhccccCC
Confidence 344444444432 23455555553 89999995 355532 23688899999999999999987765544
No 17
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=36.59 E-value=57 Score=30.02 Aligned_cols=37 Identities=16% Similarity=0.163 Sum_probs=27.6
Q ss_pred eccCCeEEecCCCCCCCCCCCChHHHHHHHHHHHHHHHHHh
Q psy8945 175 HGVENLRVVDASIMPKIVRGNTNAPTIMIAEKAADMIKEDW 215 (219)
Q Consensus 175 ~Gv~nLrV~DaSv~P~~~~~np~~t~~~iaer~a~~i~~~~ 215 (219)
-.++|||.+.+|++|- .=...+++=|..+|+.|.+++
T Consensus 456 t~i~gLyl~G~~~~pG----~Gv~g~~~sG~~~a~~i~~~~ 492 (493)
T TIGR02730 456 TAIPGLYCVGDSCFPG----QGLNAVAFSGFACAHRVAADL 492 (493)
T ss_pred CCCCCeEEecCcCCCC----CCHHHHHHHHHHHHHHHHhhc
Confidence 5799999999999883 122445666888888888764
No 18
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=31.23 E-value=66 Score=26.75 Aligned_cols=43 Identities=16% Similarity=-0.025 Sum_probs=29.8
Q ss_pred cccCCCeEeccCCeEEe-cCCCCCCCCCCCChHHHHHHHHHHHHHHHHH
Q psy8945 167 VVDARLRVHGVENLRVV-DASIMPKIVRGNTNAPTIMIAEKAADMIKED 214 (219)
Q Consensus 167 VVD~~lrV~Gv~nLrV~-DaSv~P~~~~~np~~t~~~iaer~a~~i~~~ 214 (219)
.||+.++. +++|+|++ |++-.+ .......+.-|+.+|..|.+.
T Consensus 256 ~v~~~~~t-~~~~vya~GD~~~~~----~~~~~~A~~~g~~aa~~i~~~ 299 (300)
T TIGR01292 256 VTDEGMRT-SVPGVFAAGDVRDKG----YRQAVTAAGDGCIAALSAERY 299 (300)
T ss_pred EECCCCcc-CCCCEEEeecccCcc----hhhhhhhhhhHHHHHHHHHhh
Confidence 47777775 89999998 666421 133456677788888877653
No 19
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=30.62 E-value=1.1e+02 Score=29.00 Aligned_cols=51 Identities=22% Similarity=0.178 Sum_probs=35.0
Q ss_pred ccCCCeEec-----cCCeEEec---CCCCCC-CCC-CCChHHHHHHHHHHHHHHHHHhccC
Q psy8945 168 VDARLRVHG-----VENLRVVD---ASIMPK-IVR-GNTNAPTIMIAEKAADMIKEDWILD 218 (219)
Q Consensus 168 VD~~lrV~G-----v~nLrV~D---aSv~P~-~~~-~np~~t~~~iaer~a~~i~~~~~~~ 218 (219)
+|.++||.. ++|||.+. ++++-. -++ ++.....+..|..+++.+.+..+.|
T Consensus 493 in~~~qVld~~g~pIpGLYAAG~~~gg~~g~~Y~~~G~~l~~a~~~GriAg~~aa~~~~~~ 553 (557)
T PRK12844 493 TDEHARVLREDGSVIPGLYATGNCTASVMGRTYPGAGASIGNSFVFGYIAALHAAGARSAD 553 (557)
T ss_pred CCCCceEECCCCCCccceeeccccccccccCCCCcCccchHHHHHHHHHHHHHHHhccCCC
Confidence 444555544 89999995 245432 233 7888999999999998887765543
No 20
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=28.97 E-value=76 Score=29.54 Aligned_cols=60 Identities=15% Similarity=0.150 Sum_probs=39.5
Q ss_pred ccccCCccccCCCCCCCCcccCCCeEeccCCeEEecC---CCCC-CCC-CCCChHHHHHHHHHHHHHHHH
Q psy8945 149 IYHPVGTCKMGPKDDPGSVVDARLRVHGVENLRVVDA---SIMP-KIV-RGNTNAPTIMIAEKAADMIKE 213 (219)
Q Consensus 149 ~~H~~GTc~MG~~~d~~~VVD~~lrV~Gv~nLrV~Da---Sv~P-~~~-~~np~~t~~~iaer~a~~i~~ 213 (219)
.+|-+|.+++-. ..-|+|.++++ ++|||.+.. +++- .-+ ++|....++..|..+++.+..
T Consensus 446 ~~~T~GGl~in~---~~qVl~~~g~p--IpGLYAaG~~~gg~~g~~Y~~~G~~~~~a~~fGriAg~~aa~ 510 (513)
T PRK12837 446 DLGTKGGLRTDT---AARVLDTDGRP--IPGLYAAGNTMAAVSGTTYPGGGNPIGASMLFSHLAALDMAG 510 (513)
T ss_pred cceeCCCceECC---CceEECCCCCE--eCCceecccccccccccCCCCCccchHHHHHHHHHHHHHHhc
Confidence 344455555542 23567776665 699999943 4552 223 488899999999999887743
No 21
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=27.70 E-value=1.7e+02 Score=27.75 Aligned_cols=49 Identities=29% Similarity=0.223 Sum_probs=32.6
Q ss_pred CcccCCCeEeccCCeEEec---CCCCCC--CCCCCChHHHHHHHHHHHHHHHHHhc
Q psy8945 166 SVVDARLRVHGVENLRVVD---ASIMPK--IVRGNTNAPTIMIAEKAADMIKEDWI 216 (219)
Q Consensus 166 ~VVD~~lrV~Gv~nLrV~D---aSv~P~--~~~~np~~t~~~iaer~a~~i~~~~~ 216 (219)
-|+|.++++ ++|||.+. ++++-. ...++....++..|..+++.+.+..+
T Consensus 520 qVld~dg~p--IpGLYAaG~~~gg~~g~~y~~~G~~lg~a~~fGriAg~~aa~~~~ 573 (578)
T PRK12843 520 RVLNADGQP--ISGLYACGNDMASIMGGTYPGPGITLGPAIVFAYLAARHAAKRTL 573 (578)
T ss_pred eEECCCCCC--cCCceeccccccccccCCCCCcccchHHHHHHHHHHHHHHHHhhh
Confidence 445554443 79999985 344432 13467788889999998888876654
No 22
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=27.29 E-value=99 Score=26.01 Aligned_cols=51 Identities=18% Similarity=0.137 Sum_probs=36.8
Q ss_pred CCCcccCCCeEeccCCeEEecCCC---CCCCCCCCChHHHHHHHHHHHHHHHHHhc
Q psy8945 164 PGSVVDARLRVHGVENLRVVDASI---MPKIVRGNTNAPTIMIAEKAADMIKEDWI 216 (219)
Q Consensus 164 ~~~VVD~~lrV~Gv~nLrV~DaSv---~P~~~~~np~~t~~~iaer~a~~i~~~~~ 216 (219)
...||+.-..| ++||+|+.-++ ...+=-+.+....+.-|+|+|+.|+++++
T Consensus 201 e~~~~~~t~~~--~~g~~~~gm~~~~~~~~~rmgp~fg~m~~sg~~~a~~~~~~~~ 254 (254)
T TIGR00292 201 EVAIHENTREV--VPNLYVAGMAVAAVHGLPRMGPIFGGMLLSGKHVAEQILEKLK 254 (254)
T ss_pred HHHHHhccCcc--cCCEEEechhhhhhcCCCCcCchHHHHHHhhHHHHHHHHHHhC
Confidence 34788888888 79999986443 33333455566666688999999998764
No 23
>PRK07121 hypothetical protein; Validated
Probab=27.23 E-value=1.4e+02 Score=27.48 Aligned_cols=49 Identities=18% Similarity=0.150 Sum_probs=37.0
Q ss_pred CcccCC-CeEec-----cCCeEEec---CCCCCC-CCCCCChHHHHHHHHHHHHHHHHH
Q psy8945 166 SVVDAR-LRVHG-----VENLRVVD---ASIMPK-IVRGNTNAPTIMIAEKAADMIKED 214 (219)
Q Consensus 166 ~VVD~~-lrV~G-----v~nLrV~D---aSv~P~-~~~~np~~t~~~iaer~a~~i~~~ 214 (219)
=++|.+ +||.. ++|||.+. ++++=. -+++|....++..|..+++.+.+.
T Consensus 432 l~id~~~~qVld~~g~pI~GLYAaG~~~gg~~g~~y~~G~~l~~~~~~GriAg~~aa~~ 490 (492)
T PRK07121 432 LRVDEDTGEVLRADGAPIPGLYAAGRCASGIASNGYVSGLSLADCSFFGRRAGRHAAAR 490 (492)
T ss_pred eeECCCcceEECCCCCCcCceEecccccccCCCCCCCCccccchhHHHHHHHHHHHHhh
Confidence 357777 88776 89999996 345432 247888999999999999887654
No 24
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=26.41 E-value=1.1e+02 Score=28.88 Aligned_cols=62 Identities=21% Similarity=0.141 Sum_probs=40.5
Q ss_pred ccccCCccccCCCCCCCCcccCCCeEeccCCeEEec---CCCCCC-CC-CCCChHHHHHHHHHHHHHHHHHh
Q psy8945 149 IYHPVGTCKMGPKDDPGSVVDARLRVHGVENLRVVD---ASIMPK-IV-RGNTNAPTIMIAEKAADMIKEDW 215 (219)
Q Consensus 149 ~~H~~GTc~MG~~~d~~~VVD~~lrV~Gv~nLrV~D---aSv~P~-~~-~~np~~t~~~iaer~a~~i~~~~ 215 (219)
..+-+|..++-. ..-|+|.++++ ++|||.+. ++++-. -+ .++....++..|..+++.+.+..
T Consensus 501 ~~~T~GGl~id~---~~qVld~~g~p--IpGLYAaG~~~gg~~g~~y~~~G~~lg~a~~fGriAg~~aa~~~ 567 (574)
T PRK12842 501 DLGTFDGLRTDV---TGEVLDADGTP--IAGLYAVGNDRASIMGGNYPGAGITLGPIMTFGYITGRHLAGVA 567 (574)
T ss_pred ccccCCCcCCCC---CceEECCCCCC--cCCceecccccccCccCCCCCCcccHHHHHHHHHHHHHHHHhhh
Confidence 334445554432 23566666654 79999997 344432 12 48889999999999999887664
No 25
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=25.27 E-value=74 Score=28.32 Aligned_cols=44 Identities=20% Similarity=0.097 Sum_probs=31.3
Q ss_pred cccCCCeEeccCCeEEe-cCCCCCCCCCCCCh-----HHHHHHHHHHHHHHH
Q psy8945 167 VVDARLRVHGVENLRVV-DASIMPKIVRGNTN-----APTIMIAEKAADMIK 212 (219)
Q Consensus 167 VVD~~lrV~Gv~nLrV~-DaSv~P~~~~~np~-----~t~~~iaer~a~~i~ 212 (219)
+||+.+|. ..+|+|.+ |+..+|.. .+.+. -..+.-|+.+|+.|.
T Consensus 258 ~vd~~~~t-s~~~IyA~GD~a~~~~~-~g~~~~~~~~~~A~~qg~~aa~ni~ 307 (396)
T PRK09754 258 VIDEACRT-CDPAIFAGGDVAITRLD-NGALHRCESWENANNQAQIAAAAML 307 (396)
T ss_pred EECCCCcc-CCCCEEEccceEeeeCC-CCCEEEECcHHHHHHHHHHHHHHhc
Confidence 48999997 78999998 88877754 44321 345667777777765
No 26
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=23.11 E-value=1.1e+02 Score=28.99 Aligned_cols=46 Identities=15% Similarity=0.102 Sum_probs=32.6
Q ss_pred CcccCCCeEeccCCeEEec---CCCCC-CCC-CCCChHHHHHHHHHHHHHHHH
Q psy8945 166 SVVDARLRVHGVENLRVVD---ASIMP-KIV-RGNTNAPTIMIAEKAADMIKE 213 (219)
Q Consensus 166 ~VVD~~lrV~Gv~nLrV~D---aSv~P-~~~-~~np~~t~~~iaer~a~~i~~ 213 (219)
-|+|.+++ =++|||.+. ++++- .-+ +++.....+..|..+++.+.+
T Consensus 513 qVLd~dg~--pI~GLYAaG~~~gg~~g~~Y~g~G~~lg~a~~fGriAg~~aa~ 563 (564)
T PRK12845 513 RVLREDGS--VIDGLYAIGNTAANAFGATYPGAGATIGQGLVYGYIAAQDAAA 563 (564)
T ss_pred eEECCCCC--CCCCeeEeeeeccccccCCCCCcchhhHHHHHHHHHHHHHHhc
Confidence 45555554 289999995 45553 233 388999999999999987753
No 27
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=22.78 E-value=1.5e+02 Score=28.18 Aligned_cols=49 Identities=10% Similarity=0.129 Sum_probs=33.7
Q ss_pred Cc-ccCCCeEe--------ccCCeEEecCCCC--CC---CCCCCChHHHHHHHHHHHHHHHHH
Q psy8945 166 SV-VDARLRVH--------GVENLRVVDASIM--PK---IVRGNTNAPTIMIAEKAADMIKED 214 (219)
Q Consensus 166 ~V-VD~~lrV~--------Gv~nLrV~DaSv~--P~---~~~~np~~t~~~iaer~a~~i~~~ 214 (219)
|| ||.++||. .++|||.+.-... .. -.++|..+-.+..|.++++.+.+.
T Consensus 363 Gi~vd~~g~~~~~~~~~g~~IpGLyAaGE~a~~g~hGanrl~gnsl~~~~v~Gr~Ag~~aa~~ 425 (591)
T PRK07057 363 GIPTNIHGQVVGTSRDHKEPVNGFYAIGECSCVSVHGANRLGTNSLLDLVVFGRAAGNHIVDH 425 (591)
T ss_pred CeeECCCCcEeccccCCCCeeCCeEeCccccccCCCccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 45 77778875 4899999854322 11 134678888888999988877543
No 28
>PRK08275 putative oxidoreductase; Provisional
Probab=22.29 E-value=1.3e+02 Score=28.23 Aligned_cols=55 Identities=16% Similarity=0.071 Sum_probs=36.7
Q ss_pred ccccCCccccCCCCCCCCcccCCCeEeccCCeEEe-cCCCCCCCCCCCChHHHHHHHHHHHHHHHH
Q psy8945 149 IYHPVGTCKMGPKDDPGSVVDARLRVHGVENLRVV-DASIMPKIVRGNTNAPTIMIAEKAADMIKE 213 (219)
Q Consensus 149 ~~H~~GTc~MG~~~d~~~VVD~~lrV~Gv~nLrV~-DaSv~P~~~~~np~~t~~~iaer~a~~i~~ 213 (219)
.+|.+|+..|| +=.||.+++- .++|||.+ |++..+ .|-.+.++.-|.++++.+.+
T Consensus 347 ~~~~~g~~~~G-----gi~~d~~~~t-~i~gl~a~Ge~~~~~----~~~~~~~~~~G~~a~~~~~~ 402 (554)
T PRK08275 347 EIGFCSGHSAS-----GVWVNEKAET-TVPGLYAAGDMASVP----HNYMLGAFTYGWFAGENAAE 402 (554)
T ss_pred CceeecccccC-----cEEECCCCcc-CCCCEEECcccCCch----hHHHHHHHHHHHHHHHHHHH
Confidence 46667777787 2368988884 79999988 443212 46566666777777766543
No 29
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=21.63 E-value=2.3e+02 Score=27.35 Aligned_cols=47 Identities=13% Similarity=0.070 Sum_probs=33.2
Q ss_pred ccCCCeEe---------ccCCeEEecCCCC--CC---CCCCCChHHHHHHHHHHHHHHHHH
Q psy8945 168 VDARLRVH---------GVENLRVVDASIM--PK---IVRGNTNAPTIMIAEKAADMIKED 214 (219)
Q Consensus 168 VD~~lrV~---------Gv~nLrV~DaSv~--P~---~~~~np~~t~~~iaer~a~~i~~~ 214 (219)
||.+++|. .++|||.+.--.. .. -.++|..+..+..|.++++.+.+.
T Consensus 405 vd~~g~vl~~~g~~~~t~IpGLYAaGE~a~~g~hGanRlggnsL~~a~vfGr~Ag~~aa~~ 465 (635)
T PLN00128 405 TNYHGEVVTIKGDDPDAVVPGLMAAGEAACASVHGANRLGANSLLDIVVFGRACANRVAEI 465 (635)
T ss_pred cCCCCeEecccCcccCCccCceEeeeccccccCCCCCCCchhhHHHHHHHHHHHHHHHHHh
Confidence 77777773 4999999954322 11 135678899999999999877654
No 30
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=21.07 E-value=74 Score=24.16 Aligned_cols=26 Identities=15% Similarity=0.340 Sum_probs=21.3
Q ss_pred eCCCCCHHHHHHHHHHHHHHHHHHhh
Q psy8945 84 PKFFTKKPDLDVFVAGMKLGASIVQT 109 (219)
Q Consensus 84 ~~yl~~~~D~~~l~~g~~~~~~i~~~ 109 (219)
+.|.-.|.|.+.++++++.+.+++.+
T Consensus 103 ~~~~y~~~~~~~~~~~m~~a~~~~~~ 128 (130)
T cd02960 103 RLYTYEPADIPLLIENMKKALKLLKT 128 (130)
T ss_pred ccceeCcCcHHHHHHHHHHHHHHHhc
Confidence 34555789999999999999998765
Done!