Query psy8945
Match_columns 219
No_of_seqs 180 out of 1507
Neff 7.9
Searched_HMMs 29240
Date Fri Aug 16 23:27:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8945.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8945hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fim_B ARYL-alcohol oxidase; A 100.0 1.3E-46 4.5E-51 349.1 19.4 183 15-214 383-565 (566)
2 3q9t_A Choline dehydrogenase a 100.0 2.6E-46 8.8E-51 347.8 20.0 187 14-216 386-574 (577)
3 3qvp_A Glucose oxidase; oxidor 100.0 8.5E-44 2.9E-48 331.1 15.5 162 52-218 420-582 (583)
4 2jbv_A Choline oxidase; alcoho 100.0 2.9E-42 9.8E-47 318.8 17.9 198 5-217 330-532 (546)
5 1gpe_A Protein (glucose oxidas 100.0 3.3E-41 1.1E-45 314.1 15.2 162 51-217 423-585 (587)
6 3t37_A Probable dehydrogenase; 100.0 2.7E-40 9.1E-45 302.5 18.5 178 15-212 344-521 (526)
7 1ju2_A HydroxynitrIle lyase; f 100.0 1.7E-38 5.8E-43 293.0 15.6 155 54-216 357-519 (536)
8 1kdg_A CDH, cellobiose dehydro 100.0 2.1E-37 7.2E-42 285.7 13.5 153 50-217 392-545 (546)
9 1n4w_A CHOD, cholesterol oxida 100.0 7.5E-32 2.6E-36 246.8 11.1 135 51-216 366-501 (504)
10 1coy_A Cholesterol oxidase; ox 100.0 6.1E-31 2.1E-35 241.0 10.1 134 51-215 371-505 (507)
11 3pl8_A Pyranose 2-oxidase; sub 99.9 1.6E-27 5.4E-32 223.4 10.7 136 60-218 477-616 (623)
12 3hyw_A Sulfide-quinone reducta 75.2 4.4 0.00015 35.2 5.7 50 167-216 276-333 (430)
13 4g6h_A Rotenone-insensitive NA 72.7 3.3 0.00011 37.1 4.3 44 167-213 354-398 (502)
14 4dgk_A Phytoene dehydrogenase; 67.9 2.4 8.2E-05 37.3 2.3 42 172-217 452-493 (501)
15 3f8d_A Thioredoxin reductase ( 60.9 14 0.00049 29.6 5.6 46 167-215 270-316 (323)
16 3h8l_A NADH oxidase; membrane 53.4 21 0.00071 30.3 5.6 46 167-215 289-335 (409)
17 3h28_A Sulfide-quinone reducta 53.4 22 0.00074 30.6 5.8 50 167-216 276-333 (430)
18 3sx6_A Sulfide-quinone reducta 52.9 22 0.00077 30.6 5.8 50 167-216 287-344 (437)
19 1fl2_A Alkyl hydroperoxide red 39.5 47 0.0016 26.5 5.5 45 167-216 260-305 (310)
20 3r9u_A Thioredoxin reductase; 37.0 51 0.0017 26.1 5.3 45 167-216 267-312 (315)
21 3lzw_A Ferredoxin--NADP reduct 35.9 50 0.0017 26.4 5.1 47 167-216 268-315 (332)
22 3vrd_B FCCB subunit, flavocyto 35.8 54 0.0019 27.5 5.5 46 167-215 275-323 (401)
23 2q0l_A TRXR, thioredoxin reduc 35.4 58 0.002 25.9 5.4 45 167-216 264-309 (311)
24 2ywl_A Thioredoxin reductase r 35.0 70 0.0024 23.2 5.4 43 168-215 127-170 (180)
25 2zbw_A Thioredoxin reductase; 31.0 74 0.0025 25.6 5.4 46 167-215 270-316 (335)
26 2q7v_A Thioredoxin reductase; 30.3 78 0.0027 25.4 5.4 45 166-215 266-311 (325)
27 3ab1_A Ferredoxin--NADP reduct 29.3 73 0.0025 26.1 5.1 46 167-215 281-327 (360)
28 1vdc_A NTR, NADPH dependent th 29.1 73 0.0025 25.6 5.0 45 167-215 277-322 (333)
29 1lqt_A FPRA; NADP+ derivative, 27.6 37 0.0012 29.7 3.0 45 167-215 341-386 (456)
30 3cty_A Thioredoxin reductase; 27.3 1E+02 0.0035 24.6 5.6 45 167-216 271-316 (319)
31 3fbs_A Oxidoreductase; structu 25.9 1E+02 0.0035 24.0 5.2 44 167-216 248-292 (297)
32 3kkj_A Amine oxidase, flavin-c 23.6 1.4E+02 0.0049 21.8 5.5 39 174-218 291-330 (336)
33 2h88_A Succinate dehydrogenase 22.2 78 0.0027 29.0 4.2 49 167-215 371-432 (621)
34 1trb_A Thioredoxin reductase; 22.0 1.2E+02 0.0041 24.0 5.0 46 167-216 264-314 (320)
35 2a87_A TRXR, TR, thioredoxin r 21.4 1.3E+02 0.0044 24.3 5.1 45 167-215 270-315 (335)
36 1y56_A Hypothetical protein PH 21.3 1.4E+02 0.0046 26.1 5.5 42 167-216 335-377 (493)
No 1
>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}
Probab=100.00 E-value=1.3e-46 Score=349.08 Aligned_cols=183 Identities=26% Similarity=0.411 Sum_probs=158.5
Q ss_pred CCCCCEEEEecccccccccCCCccCCCCCCCCCCCCCcEEEEEEeeccCCCeEEEcCCCCCCCCCceeeeCCCCCHHHHH
Q psy8945 15 LDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPILLKPKSRGYIQLNATDPLWGPPLIFPKFFTKKPDLD 94 (219)
Q Consensus 15 ~~~Pdiql~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~P~SrG~V~L~s~dp~~~~P~I~~~yl~~~~D~~ 94 (219)
...||+|+++.+..... . +......++|++.+.+++|+|||+|+|+|+|| ++.|+|++|||++|.|++
T Consensus 383 ~~~pd~~~~~~~~~~~~-----~------~~~~~~~~~~~~~~~l~~P~SrG~V~L~s~dp-~~~P~i~~~yl~~~~D~~ 450 (566)
T 3fim_B 383 PNSAHWETIFSNQWFHP-----A------IPRPDTGSFMSVTNALISPVARGDIKLATSNP-FDKPLINPQYLSTEFDIF 450 (566)
T ss_dssp TTSCSEEEEEESSCCCT-----T------SCCCSSCCEEEEEEEESSCSCCBEEECSSSCT-TSCCEEECCTTCSHHHHH
T ss_pred CCCCCEEEEecccchhh-----c------ccCCCCCCEEEEEEeecCCccceEEEecCCCC-CCCceeccccCCCccHHH
Confidence 35799999887643311 0 11122347899999999999999999999999 999999999999999999
Q ss_pred HHHHHHHHHHHHHhhHHHHHhhhcccccCCCCcccccCCCHHHHHHHHhhccCcccccCCccccCCCCCCCCcccCCCeE
Q psy8945 95 VFVAGMKLGASIVQTEAMQKIHARLVDVSPPQCVFYKFGTWDYWACIAMQFTGTIYHPVGTCKMGPKDDPGSVVDARLRV 174 (219)
Q Consensus 95 ~l~~g~~~~~~i~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~~~~~~~~H~~GTc~MG~~~d~~~VVD~~lrV 174 (219)
.|+++++.+++|+++++|+++...+.. |++ ....+|++|++|||+...+.||++||||||++++.++|||++|||
T Consensus 451 ~~~~~~~~~~~i~~~~~~~~~~~~~~~---P~~--~~~~sd~~~~~~ir~~~~t~~H~~GTc~Mg~~~~~~~VVD~~lrV 525 (566)
T 3fim_B 451 TMIQAVKSNLRFLSGQAWADFVIRPFD---PRL--RDPTDDAAIESYIRDNANTIFHPVGTASMSPRGASWGVVDPDLKV 525 (566)
T ss_dssp HHHHHHHHHHHHHTSGGGTTTEEEESS---GGG--SCTTCHHHHHHHHHHHCEECSCCBCTTCBCCTTCSSCSBCTTCBB
T ss_pred HHHHHHHHHHHHHhCcccCCccccccC---CCc--ccccchHHHHHHHhhcccccccccCccccCCcccCCccCCCCCeE
Confidence 999999999999999999887655432 431 235789999999999999999999999999877555999999999
Q ss_pred eccCCeEEecCCCCCCCCCCCChHHHHHHHHHHHHHHHHH
Q psy8945 175 HGVENLRVVDASIMPKIVRGNTNAPTIMIAEKAADMIKED 214 (219)
Q Consensus 175 ~Gv~nLrV~DaSv~P~~~~~np~~t~~~iaer~a~~i~~~ 214 (219)
||++|||||||||||.++++||++|+||||||+||+|+++
T Consensus 526 ~Gv~~LrVvDaSv~P~~~~~n~~~~~~~iaekaAd~I~~~ 565 (566)
T 3fim_B 526 KGVDGLRIVDGSILPFAPNAHTQGPIYLVGKQGADLIKAD 565 (566)
T ss_dssp TTCBSEEECSGGGCCSCCSSCTHHHHHHHHHHHHHHHHHT
T ss_pred ccCCCcEEcccccCCCCCCcCcHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999875
No 2
>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}
Probab=100.00 E-value=2.6e-46 Score=347.77 Aligned_cols=187 Identities=26% Similarity=0.374 Sum_probs=160.4
Q ss_pred CCCCCCEEEEecccccccccCCCccCCCCCCCCCCCCCcEEEEEEeeccCCCe-EEEcCCCCCCCCCceeeeCCCCCHHH
Q psy8945 14 SLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPILLKPKSRG-YIQLNATDPLWGPPLIFPKFFTKKPD 92 (219)
Q Consensus 14 ~~~~Pdiql~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~P~SrG-~V~L~s~dp~~~~P~I~~~yl~~~~D 92 (219)
+..+|++|+++.+..... +. ..+......++|++.+.+++|+||| +|+|+|+|| .+.|+|++|||++|.|
T Consensus 386 ~~~~p~~~~~~~~~~~~~-~~-------~~~~~~~~~~~~~~~~~l~~P~SrGG~V~L~S~dp-~~~P~i~p~yl~~~~D 456 (577)
T 3q9t_A 386 PLGQPHFELDFVCMFGTA-FQ-------WHFPTPKTGDHLTVVVDLVRPISDPGEVTLNSADP-FQQPNINLNFFANDLD 456 (577)
T ss_dssp TTSCCSEEEEEESSCCGG-GC-------SSSCCCSSSEEEEEEEEESSCCSCCEEEECSCSCT-TSCCEEECCTTCSHHH
T ss_pred CCCCceEEEEeccccccc-cc-------ccccCCCCCCEEEEEEEeeeccccCCEEEeCCCCC-CCCceEecCcCCCccH
Confidence 456899999988653211 10 0011112346899999999999999 999999999 9999999999999999
Q ss_pred HHHHHHHHHHHHHHH-hhHHHHHhhhcccccCCCCcccccCCCHHHHHHHHhhccCcccccCCccccCCCCCCCCcccCC
Q psy8945 93 LDVFVAGMKLGASIV-QTEAMQKIHARLVDVSPPQCVFYKFGTWDYWACIAMQFTGTIYHPVGTCKMGPKDDPGSVVDAR 171 (219)
Q Consensus 93 ~~~l~~g~~~~~~i~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~~~~~~~~H~~GTc~MG~~~d~~~VVD~~ 171 (219)
++.++++++.+++|+ ++++|+++...+.. |+. ...+|++|++|+|+...+.||++||||||++++ ++|||++
T Consensus 457 ~~~~~~~~~~~~~i~~~~~~~~~~~~~e~~---p~~---~~~sd~~~~~~ir~~~~t~~H~~GTc~Mg~~~~-~~VVD~~ 529 (577)
T 3q9t_A 457 IIAMREGIRFSYDLLFKGEGFKDLVESEYP---WEM---PLDSDKEMHRAVLDRCQTAFHPTGTARLSKNID-QGVVDPK 529 (577)
T ss_dssp HHHHHHHHHHHHHHHHHSTTGGGTEEEEES---SCC---CTTCHHHHHHHHHHHCEECSCCBCTTCBCSSTT-TCSBCTT
T ss_pred HHHHHHHHHHHHHHHHhChhhhhccccccC---CCC---CcCCHHHHHHHHHhccccccccccceecCCCCC-CceECCC
Confidence 999999999999999 88888887665542 332 357899999999999999999999999998654 8999999
Q ss_pred CeEeccCCeEEecCCCCCCCCCCCChHHHHHHHHHHHHHHHHHhc
Q psy8945 172 LRVHGVENLRVVDASIMPKIVRGNTNAPTIMIAEKAADMIKEDWI 216 (219)
Q Consensus 172 lrV~Gv~nLrV~DaSv~P~~~~~np~~t~~~iaer~a~~i~~~~~ 216 (219)
|||||++|||||||||||.++++||++|+||||||+||+|+++++
T Consensus 530 lrV~Gv~~LrVvDaSv~P~~~~~n~~a~~~~iaekaAd~I~~~~~ 574 (577)
T 3q9t_A 530 LKVHGIKKLRVADASVIPIIPDCRIQNSVYAVGEKCADMIKAEHK 574 (577)
T ss_dssp CBBTTCBSEEECSGGGCSSCCSSCCHHHHHHHHHHHHHHHHHHCT
T ss_pred CeEeCCCCcEEeecccccCCCCCccHHHHHHHHHHHHHHHHhhhh
Confidence 999999999999999999999999999999999999999999985
No 3
>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*
Probab=100.00 E-value=8.5e-44 Score=331.06 Aligned_cols=162 Identities=31% Similarity=0.376 Sum_probs=146.7
Q ss_pred cEEEEEEeeccCCCeEEEcCCCCCCCCCcee-eeCCCCCHHHHHHHHHHHHHHHHHHhhHHHHHhhhcccccCCCCcccc
Q psy8945 52 GITVRPILLKPKSRGYIQLNATDPLWGPPLI-FPKFFTKKPDLDVFVAGMKLGASIVQTEAMQKIHARLVDVSPPQCVFY 130 (219)
Q Consensus 52 ~~t~~~~l~~P~SrG~V~L~s~dp~~~~P~I-~~~yl~~~~D~~~l~~g~~~~~~i~~~~~~~~~~~~~~~~~~p~~~~~ 130 (219)
.+++.+.+++|+|||+|+|+|+|| ++.|+| ++||+++|.|++.++++++.+++|+++++|+.+...+. .|++...
T Consensus 420 ~~~~~~~~~~P~SrG~v~l~s~dp-~~~P~i~~~~yl~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~---~pg~~~~ 495 (583)
T 3qvp_A 420 VASFDVWDLLPFTRGYVHILDKDP-YLHHFAYDPQYFLNELDLLGQAAATQLARNISNSGAMQTYFAGET---IPGDNLA 495 (583)
T ss_dssp SEEEEEEESSCCCCBEEEESSSCG-GGCCEEEECCTTCSHHHHHHHHHHHHHHHHHHTSTTHHHHEEEEE---ESGGGSC
T ss_pred CceeeeeecccCCceEEEecCCCC-CCCcccccCCCCCCHHHHHHHHHHHHHHHHHHhCcchhhcccccc---CCCcccc
Confidence 566667779999999999999999 999999 99999999999999999999999999999998875443 3555433
Q ss_pred cCCCHHHHHHHHhhccCcccccCCccccCCCCCCCCcccCCCeEeccCCeEEecCCCCCCCCCCCChHHHHHHHHHHHHH
Q psy8945 131 KFGTWDYWACIAMQFTGTIYHPVGTCKMGPKDDPGSVVDARLRVHGVENLRVVDASIMPKIVRGNTNAPTIMIAEKAADM 210 (219)
Q Consensus 131 ~~~~~~~~~~~i~~~~~~~~H~~GTc~MG~~~d~~~VVD~~lrV~Gv~nLrV~DaSv~P~~~~~np~~t~~~iaer~a~~ 210 (219)
...+|++|++|+|+...+.||++||||||+++ .++|||++|||||++|||||||||||.++++||++|+||||||+||+
T Consensus 496 ~~~sd~~~~~~~r~~~~t~~H~~GTc~Mg~~~-~~~VVD~~lrV~Gv~~LrVvDaSv~P~~~~~n~~~t~~aiaeraAd~ 574 (583)
T 3qvp_A 496 YDADLSAWTEYIPYHFRPNYHGVGTCSMMPKE-MGGVVDNAARVYGVQGLRVIDGSIPPTQMSSHVMTVFYAMALKISDA 574 (583)
T ss_dssp TTCCHHHHHHHGGGSCEECSCCBCTTCBSCGG-GTCSBCTTCBBTTCBSEEECSTTCCSSCCSSCSHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHhccCCCcCCCCceeCCCCC-CCceECCCCeEecCCCeEEeecccCCCCCCcCcHHHHHHHHHHHHHH
Confidence 35689999999999999999999999999865 47999999999999999999999999999999999999999999999
Q ss_pred HHHHhccC
Q psy8945 211 IKEDWILD 218 (219)
Q Consensus 211 i~~~~~~~ 218 (219)
|+++|+.+
T Consensus 575 I~~~~~~~ 582 (583)
T 3qvp_A 575 ILEDYASM 582 (583)
T ss_dssp HHHHHHHC
T ss_pred HHHhhhhc
Confidence 99998754
No 4
>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*
Probab=100.00 E-value=2.9e-42 Score=318.80 Aligned_cols=198 Identities=32% Similarity=0.491 Sum_probs=158.2
Q ss_pred ceeeecccC---CCCCCCEEEEecccccccccCCCccCCCCCCCCCCCCCcEEEEEEeeccCCCeEEEcCCCCCCCCCce
Q psy8945 5 DVECGRLAD---SLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPILLKPKSRGYIQLNATDPLWGPPL 81 (219)
Q Consensus 5 ~~~~~~~~~---~~~~Pdiql~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~P~SrG~V~L~s~dp~~~~P~ 81 (219)
..+++.|.. ....|++|+++.+......+. .... . ...+.|++.+.+++|.|||+|+|+|+|| ++.|.
T Consensus 330 ~~~~~~f~~~~~~~~~p~~~~~~~~~~~~~~~~------~~g~-~-~~~~~~~~~~~~~~P~srG~V~L~s~dp-~~~P~ 400 (546)
T 2jbv_A 330 WWEIGIFTPTEDGLDRPDLMMHYGSVPFDMNTL------RHGY-P-TTENGFSLTPNVTHARSRGTVRLRSRDF-RDKPM 400 (546)
T ss_dssp SCCEEEEECSSTTCSSCSEEEEEESSCCCTTTG------GGTC-C-CCSSEEEEEEEETTCCCCBEEECSSSCT-TSCCE
T ss_pred hhheEEEEecCCCCCCCceEEEecccccccccc------ccCc-c-CCCCeEEEEEEEcccCcccEEEecCCCC-CCCce
Confidence 345556622 346799999987654310000 0000 1 1235788888999999999999999999 99999
Q ss_pred eeeCCCCCHH--HHHHHHHHHHHHHHHHhhHHHHHhhhcccccCCCCcccccCCCHHHHHHHHhhccCcccccCCccccC
Q psy8945 82 IFPKFFTKKP--DLDVFVAGMKLGASIVQTEAMQKIHARLVDVSPPQCVFYKFGTWDYWACIAMQFTGTIYHPVGTCKMG 159 (219)
Q Consensus 82 I~~~yl~~~~--D~~~l~~g~~~~~~i~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~~~~~~~~H~~GTc~MG 159 (219)
|+++|+.+|. |++.++++++.+++|+++.+++.+...+. .|+. ...++++|++|+|+...+.+|++||||||
T Consensus 401 I~~~y~~~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~---~p~~---~~~sd~~~~~~ir~~~~~~~H~~GTcrMG 474 (546)
T 2jbv_A 401 VDPRYFTDPEGHDMRVMVAGIRKAREIAAQPAMAEWTGREL---SPGV---EAQTDEELQDYIRKTHNTVYHPVGTVRMG 474 (546)
T ss_dssp EECCTTCCTTCHHHHHHHHHHHHHHHHHTSGGGTTTEEEEE---ESCT---TCCSHHHHHHHHHHHCEECSCCBCTTCBC
T ss_pred ecccccCCCchhHHHHHHHHHHHHHHHHcCcchhhcccccc---cCCC---CCCCHHHHHHHHHhcCCcccccccccccC
Confidence 9999999999 99999999999999999988877654333 2332 35689999999999999999999999999
Q ss_pred CCCCCCCcccCCCeEeccCCeEEecCCCCCCCCCCCChHHHHHHHHHHHHHHHHHhcc
Q psy8945 160 PKDDPGSVVDARLRVHGVENLRVVDASIMPKIVRGNTNAPTIMIAEKAADMIKEDWIL 217 (219)
Q Consensus 160 ~~~d~~~VVD~~lrV~Gv~nLrV~DaSv~P~~~~~np~~t~~~iaer~a~~i~~~~~~ 217 (219)
+..|+++|||++|||||++|||||||||||+++++||++|+||||||+||+|++++..
T Consensus 475 ~~~d~~~VVD~~lrV~Gv~nLrVvDaSv~P~~~~~np~~ti~aiAeraAd~I~~~~~~ 532 (546)
T 2jbv_A 475 AVEDEMSPLDPELRVKGVTGLRVADASVMPEHVTVNPNITVMMIGERCADLIRSARAG 532 (546)
T ss_dssp CTTCTTCSBCTTCBBTTSBSEEECSGGGCSSCCSSCCHHHHHHHHHHHHHHC------
T ss_pred CCCCCCceECCCCEEECCCCeEEeecccCCCCCCcchHHHHHHHHHHHHHHHHhhccc
Confidence 7555789999999999999999999999999999999999999999999999988754
No 5
>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1
Probab=100.00 E-value=3.3e-41 Score=314.15 Aligned_cols=162 Identities=30% Similarity=0.365 Sum_probs=145.6
Q ss_pred CcEEEEEEeeccCCCeEEEcCCCCCCCCCc-eeeeCCCCCHHHHHHHHHHHHHHHHHHhhHHHHHhhhcccccCCCCccc
Q psy8945 51 DGITVRPILLKPKSRGYIQLNATDPLWGPP-LIFPKFFTKKPDLDVFVAGMKLGASIVQTEAMQKIHARLVDVSPPQCVF 129 (219)
Q Consensus 51 ~~~t~~~~l~~P~SrG~V~L~s~dp~~~~P-~I~~~yl~~~~D~~~l~~g~~~~~~i~~~~~~~~~~~~~~~~~~p~~~~ 129 (219)
+.+++.+.+++|+|||+|+|+|+|| ++.| +|++||+.+|.|++.++++++.+++|+++++++.+...+. .|+...
T Consensus 423 ~~~~~~~~~~~P~srG~V~L~s~dp-~~~P~~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~---~pg~~~ 498 (587)
T 1gpe_A 423 GKINFDLWDLIPFTRGSVHILSSDP-YLWQFANDPKFFLNEFDLLGQAAASKLARDLTSQGAMKEYFAGET---LPGYNL 498 (587)
T ss_dssp TEEEEEEEESSCCCCBEEEESSSCG-GGTCEEEECCTTSSHHHHHHHHHHHHHHHHHHTSTTHHHHEEEEE---ESGGGS
T ss_pred CcEEEEEEecCCccceeEEeCCCCc-ccCccEeecccCCChHHHHHHHHHHHHHHHHHcCcchhhhccccc---CCCccc
Confidence 4688889999999999999999999 9999 9999999999999999999999999999999988765432 233221
Q ss_pred ccCCCHHHHHHHHhhccCcccccCCccccCCCCCCCCcccCCCeEeccCCeEEecCCCCCCCCCCCChHHHHHHHHHHHH
Q psy8945 130 YKFGTWDYWACIAMQFTGTIYHPVGTCKMGPKDDPGSVVDARLRVHGVENLRVVDASIMPKIVRGNTNAPTIMIAEKAAD 209 (219)
Q Consensus 130 ~~~~~~~~~~~~i~~~~~~~~H~~GTc~MG~~~d~~~VVD~~lrV~Gv~nLrV~DaSv~P~~~~~np~~t~~~iaer~a~ 209 (219)
....++++|++|+|+...+.+|++||||||+++ .+||||++|||||++|||||||||||+++++||++|+||||||+||
T Consensus 499 ~~~~sd~~~~~~ir~~~~t~~H~~GTcrMG~~~-~~sVVD~~lrV~Gv~nLrVvDaSv~P~~~~~Np~~ti~aiAeraAd 577 (587)
T 1gpe_A 499 VQNATLSQWSDYVLQNFRPNWHAVSSCSMMSRE-LGGVVDATAKVYGTQGLRVIDGSIPPTQVSSHVMTIFYGMALKVAD 577 (587)
T ss_dssp CTTCCHHHHHHHHHHSCEECSCCBCTTCBSCGG-GTCSBCTTCBBTTCBSEEECSTTCCSSCCSSCSHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHhcCcccCccCccccCCCC-CCceECCCCEEECCCCcEEeeeccCCCCCCcchHHHHHHHHHHHHH
Confidence 223689999999999999999999999999865 5799999999999999999999999999999999999999999999
Q ss_pred HHHHHhcc
Q psy8945 210 MIKEDWIL 217 (219)
Q Consensus 210 ~i~~~~~~ 217 (219)
+|+++++.
T Consensus 578 ~I~~~~~~ 585 (587)
T 1gpe_A 578 AILDDYAK 585 (587)
T ss_dssp HHHHHHHH
T ss_pred HHHhhhhc
Confidence 99998753
No 6
>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}
Probab=100.00 E-value=2.7e-40 Score=302.52 Aligned_cols=178 Identities=25% Similarity=0.345 Sum_probs=150.7
Q ss_pred CCCCCEEEEecccccccccCCCccCCCCCCCCCCCCCcEEEEEEeeccCCCeEEEcCCCCCCCCCceeeeCCCCCHHHHH
Q psy8945 15 LDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPILLKPKSRGYIQLNATDPLWGPPLIFPKFFTKKPDLD 94 (219)
Q Consensus 15 ~~~Pdiql~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~P~SrG~V~L~s~dp~~~~P~I~~~yl~~~~D~~ 94 (219)
...|++++.+....... ..+......+.|++.+.+++|.|||+|+++|+|| .+.|+|+++|+.++.|++
T Consensus 344 ~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~l~~p~srG~v~~~s~dp-~~~p~i~~~~~~~~~d~~ 412 (526)
T 3t37_A 344 AGQPEIVVGCGVAPIVS----------ESFPAPAAGSAYSLLFGITHPTSRGSVRISGPEL-GDRLIIDPAYLQTGRDRE 412 (526)
T ss_dssp CSSCCEEEEEESSCCCC----------TTSCCCCTTSEEEEEEEESSCCCCBEEECSSSST-TSCCEEECCTTCSHHHHH
T ss_pred cCCcceeeecccccccc----------cccccccCCcceeeeccccCccccCcceeccCCC-ccCceeccccCCCHHHHH
Confidence 35688877655433211 1112223357899999999999999999999999 999999999999999999
Q ss_pred HHHHHHHHHHHHHhhHHHHHhhhcccccCCCCcccccCCCHHHHHHHHhhccCcccccCCccccCCCCCCCCcccCCCeE
Q psy8945 95 VFVAGMKLGASIVQTEAMQKIHARLVDVSPPQCVFYKFGTWDYWACIAMQFTGTIYHPVGTCKMGPKDDPGSVVDARLRV 174 (219)
Q Consensus 95 ~l~~g~~~~~~i~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~~~~~~~~H~~GTc~MG~~~d~~~VVD~~lrV 174 (219)
.++++++.+++|+++++++.+...+. .|++ ..++++|++|+++...+.||++||||||.+ ++||||++|||
T Consensus 413 ~~~~~~~~~r~i~~~~~~~~~~~~~~---~pg~----~~~~~~~~~~ir~~~~t~~H~~GTcrMG~d--~~sVVD~~~rV 483 (526)
T 3t37_A 413 RFRRALEASRTIGHRDELAGWREREL---LPGT----PNSAAEMDDFIARSVITHHHPCGTCRMGKD--PDAVVDANLRL 483 (526)
T ss_dssp HHHHHHHHHHHHHTCGGGTTTEEEEC---SSCC----CCSHHHHHHHHHHHEEECSCCBCTTCBCSS--TTCSBCTTCBB
T ss_pred HHHHHHHHHHHHHcChhhhhcccccc---CCCC----CCCHHHHHHHHHhcCccCcccCccccCCCC--CCccCCCCCEE
Confidence 99999999999999988887765543 3543 257899999999999999999999999964 47999999999
Q ss_pred eccCCeEEecCCCCCCCCCCCChHHHHHHHHHHHHHHH
Q psy8945 175 HGVENLRVVDASIMPKIVRGNTNAPTIMIAEKAADMIK 212 (219)
Q Consensus 175 ~Gv~nLrV~DaSv~P~~~~~np~~t~~~iaer~a~~i~ 212 (219)
||++|||||||||||+++++||++|+||||||+||.-.
T Consensus 484 ~Gv~nL~VvDaSv~P~~~~~np~~ti~aiAEkaAd~~~ 521 (526)
T 3t37_A 484 KALDNLFVVDASIMPNLTAGPIHAAVLAIAETFARQYH 521 (526)
T ss_dssp TTCSSEEECSGGGCSSCCSSCCHHHHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEcCcccCCcChHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999998753
No 7
>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*
Probab=100.00 E-value=1.7e-38 Score=293.01 Aligned_cols=155 Identities=21% Similarity=0.291 Sum_probs=133.1
Q ss_pred EEEEEeeccCCCeEEEc-CCCCCCCCCceeeeCCCCCHHHHHHHHHHHHHHHHHHhhHHHHHhhhcccccCCCCccc---
Q psy8945 54 TVRPILLKPKSRGYIQL-NATDPLWGPPLIFPKFFTKKPDLDVFVAGMKLGASIVQTEAMQKIHARLVDVSPPQCVF--- 129 (219)
Q Consensus 54 t~~~~l~~P~SrG~V~L-~s~dp~~~~P~I~~~yl~~~~D~~~l~~g~~~~~~i~~~~~~~~~~~~~~~~~~p~~~~--- 129 (219)
.+...+++|+|||+|+| +|+|| .+.|.|++||+.+|.|++.++++++.+++|+++++++.+...+.. +.|++..
T Consensus 357 ~~~~~l~~P~SrG~V~L~~s~Dp-~~~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~p~~~~~~~ 434 (536)
T 1ju2_A 357 HFASKVAGPLSYGSLTLKSSSNV-RVSPNVKFNYYSNLTDLSHCVSGMKKIGELLSTDALKPYKVEDLP-GVEGFNILGI 434 (536)
T ss_dssp EEEEEESSCSCCEEEECSCSSCT-TSCCEECCCTTCSHHHHHHHHHHHHHHHHHHTSGGGGGGCSSCCS-TTCSCCBSSS
T ss_pred EEeeecCCCCcceEEEeCCCCCc-ccCceecccccCCccHHHHHHHHHHHHHHHHcCccchhhhccccc-cCCCcccccc
Confidence 45667789999999999 99999 999999999999999999999999999999999888887644321 1222110
Q ss_pred ---ccCCCHHHHHHHHhhccCcccccCCccccCCCCCCCCcccCCCeEeccCCeEEecCCCCCCCCCCCChHHHHHHHHH
Q psy8945 130 ---YKFGTWDYWACIAMQFTGTIYHPVGTCKMGPKDDPGSVVDARLRVHGVENLRVVDASIMPKIVRGNTNAPTIMIAEK 206 (219)
Q Consensus 130 ---~~~~~~~~~~~~i~~~~~~~~H~~GTc~MG~~~d~~~VVD~~lrV~Gv~nLrV~DaSv~P~~~~~np~~t~~~iaer 206 (219)
....++++|++|+|+...+.||++|||||| +|||++|||||++|||||||||||.++++||++|+||||||
T Consensus 435 ~~p~~~~~d~~~~~~ir~~~~t~~H~~GTcrMG------~VVD~~lrV~Gv~nLrVvDaSv~P~~~~~np~~t~~aiAer 508 (536)
T 1ju2_A 435 PLPKDQTDDAAFETFCRESVASYWHYHGGCLVG------KVLDGDFRVTGINALRVVDGSTFPYTPASHPQGFYLMLGRY 508 (536)
T ss_dssp CCCSCTTCHHHHHHHHHHHCEECSCCEESSCBT------TTBCTTSBBTTCBTEEECSGGGCSSCSSSSCHHHHHHHHHH
T ss_pred CCCcccCCHHHHHHHHHhccCccccCcCccCCc------cEECCCCeEcCCCCeEEeecccCCCCCCcchHHHHHHHHHH
Confidence 013589999999999999999999999999 69999999999999999999999999999999999999999
Q ss_pred HHHHH-HHHhc
Q psy8945 207 AADMI-KEDWI 216 (219)
Q Consensus 207 ~a~~i-~~~~~ 216 (219)
+|+.| +++|.
T Consensus 509 ~A~~ii~~~~~ 519 (536)
T 1ju2_A 509 VGIKILQERSA 519 (536)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHhhhh
Confidence 77655 55554
No 8
>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*
Probab=100.00 E-value=2.1e-37 Score=285.67 Aligned_cols=153 Identities=24% Similarity=0.252 Sum_probs=132.9
Q ss_pred CCcEEEEEEeecc-CCCeEEEcCCCCCCCCCceeeeCCCCCHHHHHHHHHHHHHHHHHHhhHHHHHhhhcccccCCCCcc
Q psy8945 50 YDGITVRPILLKP-KSRGYIQLNATDPLWGPPLIFPKFFTKKPDLDVFVAGMKLGASIVQTEAMQKIHARLVDVSPPQCV 128 (219)
Q Consensus 50 ~~~~t~~~~l~~P-~SrG~V~L~s~dp~~~~P~I~~~yl~~~~D~~~l~~g~~~~~~i~~~~~~~~~~~~~~~~~~p~~~ 128 (219)
.+.+++.+.+++| .|||+|+|+|+|. .|.|+++|+.+|.|++.++++++.+++++++.+ .... ..|++
T Consensus 392 ~~~~~~~~~~~~p~~srG~v~L~s~~~---~~~i~~~y~~~~~D~~~~~~~~~~~~~~~~~~~-----~~~~--~~p~~- 460 (546)
T 1kdg_A 392 SQIFTITVYLSTGIQSRGRIGIDAALR---GTVLTPPWLVNPVDKTVLLQALHDVVSNIGSIP-----GLTM--ITPDV- 460 (546)
T ss_dssp GGEEEEEEEECTTCCCCBEEEECTTCC---EEEEECCTTCSHHHHHHHHHHHHHHTTTGGGST-----TCEE--EESCT-
T ss_pred CCeEEEEeeecCCCCCCceEecCCCCC---CCcccccccCCchHHHHHHHHHHHHHHHhcCCC-----cccc--cCCCC-
Confidence 4678999999999 9999999999763 578899999999999999999999999987643 1111 12332
Q ss_pred cccCCCHHHHHHHHhhccCcccccCCccccCCCCCCCCcccCCCeEeccCCeEEecCCCCCCCCCCCChHHHHHHHHHHH
Q psy8945 129 FYKFGTWDYWACIAMQFTGTIYHPVGTCKMGPKDDPGSVVDARLRVHGVENLRVVDASIMPKIVRGNTNAPTIMIAEKAA 208 (219)
Q Consensus 129 ~~~~~~~~~~~~~i~~~~~~~~H~~GTc~MG~~~d~~~VVD~~lrV~Gv~nLrV~DaSv~P~~~~~np~~t~~~iaer~a 208 (219)
..+++++.+|+++...+.+|++||||||+++ .++|||++|||||++|||||||||||+++++||++|+||||||+|
T Consensus 461 ---~~~~~~~~~~~~~~~~t~~H~~GTcrMG~~~-~~~VVD~~lrV~Gv~nLrVvDaSv~P~~~~~np~~ti~aiAeraA 536 (546)
T 1kdg_A 461 ---TQTLEEYVDAYDPATMNSNHWVSSTTIGSSP-QSAVVDSNVKVFGTNNLFIVDAGIIPHLPTGNPQGTLMSAAEQAA 536 (546)
T ss_dssp ---TSCHHHHHHHSCGGGGCCSCCBCTTCBCSCT-TTCSBCTTCBBTTCSSEEECSGGGCSSCCSSCSHHHHHHHHHHHH
T ss_pred ---CCCHHHHHHHHHHhcCcccccccceecCCCC-CCeeECCCCeEccCCCcEEeEecccCCCCCccHHHHHHHHHHHHH
Confidence 2478889999999889999999999999864 689999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcc
Q psy8945 209 DMIKEDWIL 217 (219)
Q Consensus 209 ~~i~~~~~~ 217 (219)
|+|++++++
T Consensus 537 d~I~~~~~~ 545 (546)
T 1kdg_A 537 AKILALAGG 545 (546)
T ss_dssp HHHHHSTTC
T ss_pred HHHHhhcCC
Confidence 999998764
No 9
>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*
Probab=99.97 E-value=7.5e-32 Score=246.78 Aligned_cols=135 Identities=22% Similarity=0.274 Sum_probs=111.4
Q ss_pred CcEEEEEEeeccCCCeEEEcCCCCCCCCCceeeeCCCCCHHHHHHHHHHHH-HHHHHHhhHHHHHhhhcccccCCCCccc
Q psy8945 51 DGITVRPILLKPKSRGYIQLNATDPLWGPPLIFPKFFTKKPDLDVFVAGMK-LGASIVQTEAMQKIHARLVDVSPPQCVF 129 (219)
Q Consensus 51 ~~~t~~~~l~~P~SrG~V~L~s~dp~~~~P~I~~~yl~~~~D~~~l~~g~~-~~~~i~~~~~~~~~~~~~~~~~~p~~~~ 129 (219)
+.++++..+++|.|||+|+|+|+|| .|+++|+.++ | +.++++++ .+++|+++.+. . ++.+
T Consensus 366 ~~~~~~~~~~~p~srG~V~L~s~~~-----~i~~~~~~~~-D-~~~~~~~~~~~~~i~~~~~~-------~----~~~~- 426 (504)
T 1n4w_A 366 TWVSLYLAITKNPQRGTFVYDAATD-----RAKLNWTRDQ-N-APAVNAAKALFDRINKANGT-------I----YRYD- 426 (504)
T ss_dssp CCEEEEEEEECCCCCBCEEEETTTT-----EEEECCCGGG-G-HHHHHHHHHHHHHHHHHHTC-------C----BCCS-
T ss_pred hhhhhheeeeccCCCcEEEecCCCC-----ceEeccCCCc-C-HHHHHHHHHHHHHHHhccCC-------C----cCCc-
Confidence 4677888889999999999999776 6999999999 9 88999999 88888766441 1 1110
Q ss_pred ccCCCHHHHHHHHhhccCcccccCCccccCCCCCCCCcccCCCeEeccCCeEEecCCCCCCCCCCCChHHHHHHHHHHHH
Q psy8945 130 YKFGTWDYWACIAMQFTGTIYHPVGTCKMGPKDDPGSVVDARLRVHGVENLRVVDASIMPKIVRGNTNAPTIMIAEKAAD 209 (219)
Q Consensus 130 ~~~~~~~~~~~~i~~~~~~~~H~~GTc~MG~~~d~~~VVD~~lrV~Gv~nLrV~DaSv~P~~~~~np~~t~~~iaer~a~ 209 (219)
.+ .++ |+++ ...+.+|++|||||| +|||++|||||++|||||||||||+++++||++|+||||||+||
T Consensus 427 -~~-~~~-~~~~---~~~~~~H~~GTcrMG------~VVD~~~rV~Gv~nLrVvDaSv~P~~~~~np~~ti~aiAeraAd 494 (504)
T 1n4w_A 427 -LF-GTQ-LKAF---ADDFCYHPLGGCVLG------KATDDYGRVAGYKNLYVTDGSLIPGSVGVNPFVTITALAERNVE 494 (504)
T ss_dssp -SS-SSS-CCSE---ECSEESSCBCSSCTT------TTBCTTSBBTTCSSEEECSGGGSCSCCSSCSHHHHHHHHHHHHH
T ss_pred -hh-hhh-hhhh---ccCccccccCCceee------eEECCCCeEeccCCeEEeeccccCCCCCcChHHHHHHHHHHHHH
Confidence 00 000 1111 456899999999999 79999999999999999999999999999999999999999999
Q ss_pred HHHHHhc
Q psy8945 210 MIKEDWI 216 (219)
Q Consensus 210 ~i~~~~~ 216 (219)
+|++++.
T Consensus 495 ~I~~~~~ 501 (504)
T 1n4w_A 495 RIIKQDV 501 (504)
T ss_dssp HHHHHHC
T ss_pred HHHHhhc
Confidence 9999875
No 10
>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*
Probab=99.97 E-value=6.1e-31 Score=240.98 Aligned_cols=134 Identities=21% Similarity=0.204 Sum_probs=109.3
Q ss_pred CcEEEEEEeeccCCCeEEEcCCCCCCCCCceeeeCCCCCHHHHHHHHHHHH-HHHHHHhhHHHHHhhhcccccCCCCccc
Q psy8945 51 DGITVRPILLKPKSRGYIQLNATDPLWGPPLIFPKFFTKKPDLDVFVAGMK-LGASIVQTEAMQKIHARLVDVSPPQCVF 129 (219)
Q Consensus 51 ~~~t~~~~l~~P~SrG~V~L~s~dp~~~~P~I~~~yl~~~~D~~~l~~g~~-~~~~i~~~~~~~~~~~~~~~~~~p~~~~ 129 (219)
+.++++..+++|.|||+|+|+|+|| .|+++|+.++ | ..++++++ .+++|+++.+ . .+..+.
T Consensus 371 ~~~~~~~~~~~p~s~G~V~L~s~~~-----~i~~~~~~~~-D-~~~~~~~~~~~~~i~~~~~-----~-~~~~~~----- 432 (507)
T 1coy_A 371 TYVSLYLAITKNPERARFQFNSGTG-----KVDLTWAQSQ-N-QKGIDMAKKVFDKINQKEG-----T-IYRTDL----- 432 (507)
T ss_dssp CCEEEEEEEECCCCCBCEEEETTTT-----EEEECCCGGG-G-HHHHHHHHHHHHHHHHHHT-----C-CBCSSC-----
T ss_pred hheeeeEEEeeeCCCcEEEEccCCC-----ceeeccCCCC-c-HHHHHHHHHHHHHHHhhcC-----C-cccCcc-----
Confidence 4677777888999999999999765 8999999999 8 57888888 8899887643 1 111111
Q ss_pred ccCCCHHHHHHHHhhccCcccccCCccccCCCCCCCCcccCCCeEeccCCeEEecCCCCCCCCCCCChHHHHHHHHHHHH
Q psy8945 130 YKFGTWDYWACIAMQFTGTIYHPVGTCKMGPKDDPGSVVDARLRVHGVENLRVVDASIMPKIVRGNTNAPTIMIAEKAAD 209 (219)
Q Consensus 130 ~~~~~~~~~~~~i~~~~~~~~H~~GTc~MG~~~d~~~VVD~~lrV~Gv~nLrV~DaSv~P~~~~~np~~t~~~iaer~a~ 209 (219)
..+++ ++| ...+.+|++|||||| +|||++|||||++|||||||||||+++++||++|+||||||+||
T Consensus 433 --~~~d~--~~~---~~~~~~H~~GTcrMG------~VVD~~~rV~Gv~nLrVvDaSv~P~~~~~Np~~ti~alAeraAd 499 (507)
T 1coy_A 433 --FGVYY--KTW---GDDFTYHPLGGVLLN------KATDNFGRLPEYPGLYVVDGSLVPGNVGVNPFVTITALAERNMD 499 (507)
T ss_dssp --C--CC--CSS---BCSEESCCBCSSCTT------TTSCTTSBCTTSTTEEECSGGGSCSCCSSCSHHHHHHHHHHHHH
T ss_pred --cccch--hhh---cccccccccCCcchh------heECCCCeEeccCCeEEeechhccCCCCcChHHHHHHHHHHHHH
Confidence 11222 222 456889999999999 49999999999999999999999999999999999999999999
Q ss_pred HHHHHh
Q psy8945 210 MIKEDW 215 (219)
Q Consensus 210 ~i~~~~ 215 (219)
+|+++.
T Consensus 500 ~I~~~~ 505 (507)
T 1coy_A 500 KIISSD 505 (507)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 998764
No 11
>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...
Probab=99.94 E-value=1.6e-27 Score=223.38 Aligned_cols=136 Identities=20% Similarity=0.218 Sum_probs=114.8
Q ss_pred eccCCCeEEEcCC--CCCCCCCceeeeCCCCCHH-HHHHHHHHHHHHHHHHhhHHHHHhhhcccccCCCCcccccCCCHH
Q psy8945 60 LKPKSRGYIQLNA--TDPLWGPPLIFPKFFTKKP-DLDVFVAGMKLGASIVQTEAMQKIHARLVDVSPPQCVFYKFGTWD 136 (219)
Q Consensus 60 ~~P~SrG~V~L~s--~dp~~~~P~I~~~yl~~~~-D~~~l~~g~~~~~~i~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 136 (219)
+.|.++|+|+|++ +|+ ++.|.++++|..++. |++.+.++++.+++|++. ++.... .+.. .+
T Consensus 477 ~~p~~~n~v~L~~~~~D~-~g~P~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-----~g~~~~---~~~~---~~---- 540 (623)
T 3pl8_A 477 TEPKEENKLWFSDKITDA-YNMPQPTFDFRFPAGRTSKEAEDMMTDMCVMSAK-----IGGFLP---GSLP---QF---- 540 (623)
T ss_dssp CCCCTTCEEEEEEEEECT-TSSEEEEEECCCCTTHHHHHHHHHHHHHHHHHTT-----TEEECT---TSCS---EE----
T ss_pred eccCCCCEEEECCCCcCC-CCCceEEEEEeCCcHHHHHHHHHHHHHHHHHHHh-----cCCccc---Cchh---hc----
Confidence 4599999999987 899 999999999999999 999999999999998753 333221 0100 00
Q ss_pred HHHHHHhhccCcccccCCccccCCCCCCCCcc-cCCCeEeccCCeEEecCCCCCCCCCCCChHHHHHHHHHHHHHHHHHh
Q psy8945 137 YWACIAMQFTGTIYHPVGTCKMGPKDDPGSVV-DARLRVHGVENLRVVDASIMPKIVRGNTNAPTIMIAEKAADMIKEDW 215 (219)
Q Consensus 137 ~~~~~i~~~~~~~~H~~GTc~MG~~~d~~~VV-D~~lrV~Gv~nLrV~DaSv~P~~~~~np~~t~~~iaer~a~~i~~~~ 215 (219)
....+++|++||||||.+++.+||| |++|||||++||||+|+|+||+.+++||++|+||+|+|+|+.|++++
T Consensus 541 -------~~~~~~~H~~gt~~mg~~~~~~~vvvd~~~~~~~~~~l~v~d~s~~p~~~~~np~~t~~a~a~r~a~~i~~~~ 613 (623)
T 3pl8_A 541 -------MEPGLVLHLGGTHRMGFDEKEDNCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLAIKSCEYIKQNF 613 (623)
T ss_dssp -------CCTTTTCCCBCTTCBCSSTTTTTCSBCTTCBBTTCSSEEECSGGGCCSCCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred -------cCCCCcccCCCceeCCCCCCCCeeEECCCCCEecCCCeEEecCCccCCCCCcChHHHHHHHHHHHHHHHHHHh
Confidence 0125689999999999874578997 99999999999999999999999999999999999999999999998
Q ss_pred ccC
Q psy8945 216 ILD 218 (219)
Q Consensus 216 ~~~ 218 (219)
+..
T Consensus 614 ~~~ 616 (623)
T 3pl8_A 614 TPS 616 (623)
T ss_dssp CCC
T ss_pred hcC
Confidence 653
No 12
>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*
Probab=75.18 E-value=4.4 Score=35.18 Aligned_cols=50 Identities=20% Similarity=0.151 Sum_probs=37.5
Q ss_pred cccCCCeEeccCCeEEe-cCCCCCCCC-----CCCC--hHHHHHHHHHHHHHHHHHhc
Q psy8945 167 VVDARLRVHGVENLRVV-DASIMPKIV-----RGNT--NAPTIMIAEKAADMIKEDWI 216 (219)
Q Consensus 167 VVD~~lrV~Gv~nLrV~-DaSv~P~~~-----~~np--~~t~~~iaer~a~~i~~~~~ 216 (219)
+||+.+|+-+.+|+|.+ |++-+|... .+.| -..+...|.-+|+.|++.+.
T Consensus 276 ~vd~~lq~t~~~~IfAiGD~a~~p~~~~~~~~~~~pk~a~~A~~qg~~~A~Ni~~~l~ 333 (430)
T 3hyw_A 276 IVNRCFQNPTYKNIFGVGVVTAIPPIEKTPIPTGVPKTGMMIEQMAMAVAHNIVNDIR 333 (430)
T ss_dssp CCCTTSBCSSSTTEEECSTTBCCCCSSCCSSCCCCCCCHHHHHHHHHHHHHHHHHHHT
T ss_pred EecccccCCCCCCEEEeccEEecCCcccCcCcCccchHHHHHHHHHHHHHHHHHHHhc
Confidence 68899999999999999 999888532 2233 23556678888888887653
No 13
>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*
Probab=72.70 E-value=3.3 Score=37.10 Aligned_cols=44 Identities=20% Similarity=0.166 Sum_probs=34.6
Q ss_pred cccCCCeEeccCCeEEe-cCCCCCCCCCCCChHHHHHHHHHHHHHHHH
Q psy8945 167 VVDARLRVHGVENLRVV-DASIMPKIVRGNTNAPTIMIAEKAADMIKE 213 (219)
Q Consensus 167 VVD~~lrV~Gv~nLrV~-DaSv~P~~~~~np~~t~~~iaer~a~~i~~ 213 (219)
+||+.||+.+.+|+|++ |++..|.++.+ -.++.-|+.+|+.|.+
T Consensus 354 ~Vd~~lq~~~~~~IfAiGD~a~~~~p~~a---~~A~qqg~~~A~ni~~ 398 (502)
T 4g6h_A 354 AVNDFLQVKGSNNIFAIGDNAFAGLPPTA---QVAHQEAEYLAKNFDK 398 (502)
T ss_dssp EBCTTSBBTTCSSEEECGGGEESSSCCCH---HHHHHHHHHHHHHHHH
T ss_pred eECCccccCCCCCEEEEEcccCCCCCCch---HHHHHHHHHHHHHHHH
Confidence 59999999999999999 99988865533 3466677777877754
No 14
>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}
Probab=67.91 E-value=2.4 Score=37.26 Aligned_cols=42 Identities=29% Similarity=0.235 Sum_probs=25.0
Q ss_pred CeEeccCCeEEecCCCCCCCCCCCChHHHHHHHHHHHHHHHHHhcc
Q psy8945 172 LRVHGVENLRVVDASIMPKIVRGNTNAPTIMIAEKAADMIKEDWIL 217 (219)
Q Consensus 172 lrV~Gv~nLrV~DaSv~P~~~~~np~~t~~~iaer~a~~i~~~~~~ 217 (219)
.+.-.++|||.+.+|++|-. -...+++=|..+|+.|++++..
T Consensus 452 ~~~t~i~gLyl~G~~t~pG~----Gv~ga~~SG~~aA~~il~dL~g 493 (501)
T 4dgk_A 452 NRDKTITNLYLVGAGTHPGA----GIPGVIGSAKATAGLMLEDLIG 493 (501)
T ss_dssp ----CCTTEEECCCH----------HHHHHHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCEEEECCCCCCcc----cHHHHHHHHHHHHHHHHHHhcC
Confidence 44567899999999998731 1223444589999999998743
No 15
>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*
Probab=60.88 E-value=14 Score=29.61 Aligned_cols=46 Identities=15% Similarity=0.020 Sum_probs=33.2
Q ss_pred cccCCCeEeccCCeEEe-cCCCCCCCCCCCChHHHHHHHHHHHHHHHHHh
Q psy8945 167 VVDARLRVHGVENLRVV-DASIMPKIVRGNTNAPTIMIAEKAADMIKEDW 215 (219)
Q Consensus 167 VVD~~lrV~Gv~nLrV~-DaSv~P~~~~~np~~t~~~iaer~a~~i~~~~ 215 (219)
.||.+++. .++|||++ |+.-.| +.......++.-|..+|..|.+.+
T Consensus 270 ~vd~~~~t-~~~~vya~GD~~~~~--~~~~~~~~A~~~g~~aa~~i~~~l 316 (323)
T 3f8d_A 270 KVDEWMRT-SVPGVFAAGDCTSAW--LGFRQVITAVAQGAVAATSAYRYV 316 (323)
T ss_dssp CCCTTCBC-SSTTEEECSTTBSTT--TTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred ecCCCcee-cCCCEEEcceecCCC--CcccceeehhhHHHHHHHHHHHHH
Confidence 57888886 89999999 777665 333455666667777887776655
No 16
>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*
Probab=53.44 E-value=21 Score=30.32 Aligned_cols=46 Identities=20% Similarity=0.161 Sum_probs=34.2
Q ss_pred cccCCCeEeccCCeEEe-cCCCCCCCCCCCChHHHHHHHHHHHHHHHHHh
Q psy8945 167 VVDARLRVHGVENLRVV-DASIMPKIVRGNTNAPTIMIAEKAADMIKEDW 215 (219)
Q Consensus 167 VVD~~lrV~Gv~nLrV~-DaSv~P~~~~~np~~t~~~iaer~a~~i~~~~ 215 (219)
.||+.+|+.+.+|++++ |++-+|.. .....+..-|..+|+.|...+
T Consensus 289 ~vd~~~~~~~~~~vfa~GD~~~~~~~---~~~~~A~~q~~~aa~~i~~~l 335 (409)
T 3h8l_A 289 PTDLNMVSIKYDNVYAVGDANSMTVP---KLGYLAVMTGRIAAQHLANRL 335 (409)
T ss_dssp CBBTTSBBSSCTTEEECGGGBTTCCS---CCHHHHHHHHHHHHHHHHHHT
T ss_pred EeCcccccCCCCCEEEeehhccCCCC---cHHHHHHHHHHHHHHHHHHHh
Confidence 58899999899999999 77766432 234456666778888887765
No 17
>3h28_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3h27_A* 3h29_A* 3hyv_A* 3hyw_A* 3hyx_A*
Probab=53.43 E-value=22 Score=30.56 Aligned_cols=50 Identities=20% Similarity=0.133 Sum_probs=36.0
Q ss_pred cccCCCeEeccCCeEEe-cCCCCCCC-----CC--CCChHHHHHHHHHHHHHHHHHhc
Q psy8945 167 VVDARLRVHGVENLRVV-DASIMPKI-----VR--GNTNAPTIMIAEKAADMIKEDWI 216 (219)
Q Consensus 167 VVD~~lrV~Gv~nLrV~-DaSv~P~~-----~~--~np~~t~~~iaer~a~~i~~~~~ 216 (219)
.||+.+|.-+.+|+|++ |+.-+|.. +. ..+...+..-|..+|+.|.+.+.
T Consensus 276 ~Vd~~l~t~~~~~Ifa~GD~~~~~~~~~~~~~~~~pk~~~~A~~~g~~aa~ni~~~l~ 333 (430)
T 3h28_A 276 IVNRCFQNPTYKNIFGVGVVTAIPPIEKTPIPTGVPKTGMMIEQMAMAVAHNIVNDIR 333 (430)
T ss_dssp CCCTTSBCSSSTTEEECSTTBCCCCSSCCSSCCCCCCCHHHHHHHHHHHHHHHHHHHT
T ss_pred ecCccccCCCCCCEEEEEeeeccCCccCCCCCCCCCchHHHHHHHHHHHHHHHHHHhc
Confidence 58888898899999999 88777642 11 12345566677888888887653
No 18
>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*
Probab=52.88 E-value=22 Score=30.58 Aligned_cols=50 Identities=24% Similarity=0.220 Sum_probs=36.0
Q ss_pred cccCCCeEeccCCeEEe-cCCCCCCC-----CCCC--ChHHHHHHHHHHHHHHHHHhc
Q psy8945 167 VVDARLRVHGVENLRVV-DASIMPKI-----VRGN--TNAPTIMIAEKAADMIKEDWI 216 (219)
Q Consensus 167 VVD~~lrV~Gv~nLrV~-DaSv~P~~-----~~~n--p~~t~~~iaer~a~~i~~~~~ 216 (219)
.||+.+|..+.+|+|++ |+.-+|.. +... +...+..-|..+|+.|.+.+.
T Consensus 287 ~Vd~~l~t~~~~~Ifa~GD~~~~~~~~~~~~~~~~pk~~~~A~~qg~~aA~ni~~~l~ 344 (437)
T 3sx6_A 287 LVDEHQRSKKYANIFAAGIAIAIPPVETTPVPTGAPKTGYMIESMVSAAVHNIKADLE 344 (437)
T ss_dssp CBCTTSBBSSCTTEEECGGGBCCCCSCCCSSCCCCCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred EeChhccCCCCCCEEEEEEEeccCCcCCCcCCCCCCcHHHHHHHHHHHHHHHHHHHhc
Confidence 58888998899999999 88877742 1122 344566677788888887653
No 19
>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5
Probab=39.53 E-value=47 Score=26.45 Aligned_cols=45 Identities=18% Similarity=0.160 Sum_probs=32.5
Q ss_pred cccCCCeEeccCCeEEe-cCCCCCCCCCCCChHHHHHHHHHHHHHHHHHhc
Q psy8945 167 VVDARLRVHGVENLRVV-DASIMPKIVRGNTNAPTIMIAEKAADMIKEDWI 216 (219)
Q Consensus 167 VVD~~lrV~Gv~nLrV~-DaSv~P~~~~~np~~t~~~iaer~a~~i~~~~~ 216 (219)
+||+++| -.++|+|++ |+.-.|. .....++.-|..+|..|.+.+.
T Consensus 260 ~vd~~~~-t~~~~vya~GD~~~~~~----~~~~~A~~~g~~aa~~i~~~l~ 305 (310)
T 1fl2_A 260 IIDAKCE-TNVKGVFAAGDCTTVPY----KQIIIATGEGAKASLSAFDYLI 305 (310)
T ss_dssp CCCTTCB-CSSTTEEECSTTBSCSS----CCHHHHHHHHHHHHHHHHHHHH
T ss_pred EcCCCCc-cCCCCEEEeecccCCcc----hhhhhhHhhHHHHHHHHHHHHH
Confidence 5888888 678999998 7665552 3445566677888888877653
No 20
>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}
Probab=37.00 E-value=51 Score=26.13 Aligned_cols=45 Identities=16% Similarity=-0.065 Sum_probs=32.3
Q ss_pred cccCCCeEeccCCeEEe-cCCCCCCCCCCCChHHHHHHHHHHHHHHHHHhc
Q psy8945 167 VVDARLRVHGVENLRVV-DASIMPKIVRGNTNAPTIMIAEKAADMIKEDWI 216 (219)
Q Consensus 167 VVD~~lrV~Gv~nLrV~-DaSv~P~~~~~np~~t~~~iaer~a~~i~~~~~ 216 (219)
.||+.+|. .++|+|++ |+.-.+ .......+.-|..+|..|.+.+.
T Consensus 267 ~vd~~~~t-~~~~v~a~GD~~~~~----~~~~~~A~~~g~~aa~~i~~~l~ 312 (315)
T 3r9u_A 267 SVDLKMQT-SVAGLFAAGDLRKDA----PKQVICAAGDGAVAALSAMAYIE 312 (315)
T ss_dssp CCCTTCBC-SSTTEEECGGGBTTC----CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred EeCCCccc-CCCCEEEeecccCCc----hhhhhhHHhhHHHHHHHHHHHHH
Confidence 58888887 89999999 664322 23455666778888888877654
No 21
>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*
Probab=35.88 E-value=50 Score=26.41 Aligned_cols=47 Identities=19% Similarity=0.070 Sum_probs=31.1
Q ss_pred cccCCCeEeccCCeEEe-cCCCCCCCCCCCChHHHHHHHHHHHHHHHHHhc
Q psy8945 167 VVDARLRVHGVENLRVV-DASIMPKIVRGNTNAPTIMIAEKAADMIKEDWI 216 (219)
Q Consensus 167 VVD~~lrV~Gv~nLrV~-DaSv~P~~~~~np~~t~~~iaer~a~~i~~~~~ 216 (219)
.||+.++. .++|||++ |+.-+|.. .......+.-|..+|..|.+.+.
T Consensus 268 ~vd~~~~t-~~~~vya~GD~~~~~~~--~~~~~~A~~~g~~aa~~i~~~l~ 315 (332)
T 3lzw_A 268 VVKSTMET-NIEGFFAAGDICTYEGK--VNLIASGFGEAPTAVNNAKAYMD 315 (332)
T ss_dssp ECCTTSBC-SSTTEEECGGGEECTTC--CCCHHHHHHHHHHHHHHHHHHHC
T ss_pred EeCCCCce-ecCCEEEccceecCCCC--cceEeeehhhHHHHHHHHHHhhC
Confidence 57888886 89999999 66555422 12334445557778888777653
No 22
>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*
Probab=35.81 E-value=54 Score=27.46 Aligned_cols=46 Identities=22% Similarity=0.159 Sum_probs=33.0
Q ss_pred cccCC-CeEeccCCeEEe-cCC-CCCCCCCCCChHHHHHHHHHHHHHHHHHh
Q psy8945 167 VVDAR-LRVHGVENLRVV-DAS-IMPKIVRGNTNAPTIMIAEKAADMIKEDW 215 (219)
Q Consensus 167 VVD~~-lrV~Gv~nLrV~-DaS-v~P~~~~~np~~t~~~iaer~a~~i~~~~ 215 (219)
.||++ +|.-+.+|+|.+ |+. ..|.+ -+...++.-|..+|+.|.+.+
T Consensus 275 ~VD~~tl~~t~~p~VfAiGDva~~~~~p---k~a~~A~~qa~v~A~ni~~~l 323 (401)
T 3vrd_B 275 PVDIRTFESSLQPGIHVIGDACNAAPMP---KSAYSANSQAKVAAAAVVALL 323 (401)
T ss_dssp CBCTTTCBBSSSTTEEECGGGBCCTTSC---BSHHHHHHHHHHHHHHHHHHH
T ss_pred EECCCcceecCCCCEEEecccccCCCCC---chHHHHHHHHHHHHHHHHHHh
Confidence 58887 899999999999 754 34432 234456667788888887665
No 23
>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*
Probab=35.42 E-value=58 Score=25.95 Aligned_cols=45 Identities=20% Similarity=0.110 Sum_probs=30.7
Q ss_pred cccCCCeEeccCCeEEe-cCCCCCCCCCCCChHHHHHHHHHHHHHHHHHhc
Q psy8945 167 VVDARLRVHGVENLRVV-DASIMPKIVRGNTNAPTIMIAEKAADMIKEDWI 216 (219)
Q Consensus 167 VVD~~lrV~Gv~nLrV~-DaSv~P~~~~~np~~t~~~iaer~a~~i~~~~~ 216 (219)
+||+.+|. .++|+|++ |+.-.| .......+.-|..+|..|.+.+.
T Consensus 264 ~vd~~~~t-~~~~vya~GD~~~~~----~~~~~~A~~~g~~aa~~i~~~l~ 309 (311)
T 2q0l_A 264 VVDFSMKT-NVQGLFAAGDIRIFA----PKQVVCAASDGATAALSVISYLE 309 (311)
T ss_dssp CCCTTCBC-SSTTEEECSTTBTTC----CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred EeCCcccc-CCCCeEEcccccCcc----hHHHHHHHHhHHHHHHHHHHHHh
Confidence 57888885 78999999 665542 12344555667888888876653
No 24
>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*
Probab=35.02 E-value=70 Score=23.23 Aligned_cols=43 Identities=12% Similarity=-0.105 Sum_probs=30.1
Q ss_pred ccCCCeEeccCCeEEe-cCCCCCCCCCCCChHHHHHHHHHHHHHHHHHh
Q psy8945 168 VDARLRVHGVENLRVV-DASIMPKIVRGNTNAPTIMIAEKAADMIKEDW 215 (219)
Q Consensus 168 VD~~lrV~Gv~nLrV~-DaSv~P~~~~~np~~t~~~iaer~a~~i~~~~ 215 (219)
||+.+|. .++|+|++ |+.-.|. ......+.-|..+|..|....
T Consensus 127 vd~~~~t-~~~~i~a~GD~~~~~~----~~~~~A~~~g~~aa~~i~~~~ 170 (180)
T 2ywl_A 127 TDEGGRT-SYPRVYAAGVARGKVP----GHAIISAGDGAYVAVHLVSDL 170 (180)
T ss_dssp CCTTCBC-SSTTEEECGGGGTCCS----CCHHHHHHHHHHHHHHHHHHH
T ss_pred eCCCCCc-CCCCEEEeecccCcch----hhHHHHHHhHHHHHHHHHHHh
Confidence 8888988 88999999 7766542 133445556777787776554
No 25
>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}
Probab=31.04 E-value=74 Score=25.60 Aligned_cols=46 Identities=15% Similarity=-0.003 Sum_probs=30.8
Q ss_pred cccCCCeEeccCCeEEe-cCCCCCCCCCCCChHHHHHHHHHHHHHHHHHh
Q psy8945 167 VVDARLRVHGVENLRVV-DASIMPKIVRGNTNAPTIMIAEKAADMIKEDW 215 (219)
Q Consensus 167 VVD~~lrV~Gv~nLrV~-DaSv~P~~~~~np~~t~~~iaer~a~~i~~~~ 215 (219)
+||+.+| -.++|||++ |+.-+|.. .......+.-|..+|..|.+.+
T Consensus 270 ~vd~~~~-t~~~~vya~GD~~~~~~~--~~~~~~A~~~g~~aa~~i~~~l 316 (335)
T 2zbw_A 270 KVDTTMA-TSIPGVYACGDIVTYPGK--LPLIVLGFGEAAIAANHAAAYA 316 (335)
T ss_dssp ECCTTCB-CSSTTEEECSTTEECTTC--CCCHHHHHHHHHHHHHHHHHHH
T ss_pred eeCCCCC-CCCCCEEEeccccccCcc--hhhhhhhHHHHHHHHHHHHHHh
Confidence 5788888 478999999 77766532 1233344556777888777665
No 26
>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}
Probab=30.33 E-value=78 Score=25.40 Aligned_cols=45 Identities=18% Similarity=0.069 Sum_probs=30.6
Q ss_pred CcccCCCeEeccCCeEEe-cCCCCCCCCCCCChHHHHHHHHHHHHHHHHHh
Q psy8945 166 SVVDARLRVHGVENLRVV-DASIMPKIVRGNTNAPTIMIAEKAADMIKEDW 215 (219)
Q Consensus 166 ~VVD~~lrV~Gv~nLrV~-DaSv~P~~~~~np~~t~~~iaer~a~~i~~~~ 215 (219)
=+||++++. .++|+|++ |+.-.| .......+.-|..+|..|.+.+
T Consensus 266 i~vd~~~~t-~~~~vya~GD~~~~~----~~~~~~A~~~g~~aa~~i~~~l 311 (325)
T 2q7v_A 266 VDVRDEIYT-NIPMLFAAGDVSDYI----YRQLATSVGAGTRAAMMTERQL 311 (325)
T ss_dssp BCCBTTTBC-SSTTEEECSTTTCSS----CCCHHHHHHHHHHHHHHHHHHH
T ss_pred EecCCCCcc-CCCCEEEeecccCcc----HHHHHHHHHHHHHHHHHHHHHH
Confidence 358888885 78999999 665543 1234556666777787776654
No 27
>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}
Probab=29.34 E-value=73 Score=26.08 Aligned_cols=46 Identities=20% Similarity=0.151 Sum_probs=30.4
Q ss_pred cccCCCeEeccCCeEEe-cCCCCCCCCCCCChHHHHHHHHHHHHHHHHHh
Q psy8945 167 VVDARLRVHGVENLRVV-DASIMPKIVRGNTNAPTIMIAEKAADMIKEDW 215 (219)
Q Consensus 167 VVD~~lrV~Gv~nLrV~-DaSv~P~~~~~np~~t~~~iaer~a~~i~~~~ 215 (219)
+||+.+|. .++|||++ |+.-+|.. .......+.-|..+|..|.+.+
T Consensus 281 ~vd~~~~t-~~~~vya~GD~~~~~~~--~~~~~~A~~~g~~aa~~i~~~l 327 (360)
T 3ab1_A 281 VVDSHMKT-SVDGLYAAGDIAYYPGK--LKIIQTGLSEATMAVRHSLSYI 327 (360)
T ss_dssp ECCTTSBC-SSTTEEECSTTEECTTC--CCSHHHHHHHHHHHHHHHHHHH
T ss_pred eecCCCcC-CCCCEEEecCccCCCCc--cceeehhHHHHHHHHHHHHhhc
Confidence 57888886 78999999 77665531 1233344555777787776654
No 28
>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*
Probab=29.09 E-value=73 Score=25.61 Aligned_cols=45 Identities=11% Similarity=-0.117 Sum_probs=29.6
Q ss_pred cccCCCeEeccCCeEEe-cCCCCCCCCCCCChHHHHHHHHHHHHHHHHHh
Q psy8945 167 VVDARLRVHGVENLRVV-DASIMPKIVRGNTNAPTIMIAEKAADMIKEDW 215 (219)
Q Consensus 167 VVD~~lrV~Gv~nLrV~-DaSv~P~~~~~np~~t~~~iaer~a~~i~~~~ 215 (219)
+||+.++.-.++|+|++ |+.-.| ......++.-|..+|..|.+.+
T Consensus 277 ~vd~~~~~t~~~~vya~GD~~~~~----~~~~~~A~~~g~~aa~~i~~~l 322 (333)
T 1vdc_A 277 VTKPGTTQTSVPGVFAAGDVQDKK----YRQAITAAGTGCMAALDAEHYL 322 (333)
T ss_dssp CCCTTSCBCSSTTEEECGGGGCSS----CCCHHHHHHHHHHHHHHHHHHH
T ss_pred EechhhcccCCCCEEEeeeccCCC----chhHHHHHHhHHHHHHHHHHHH
Confidence 46665545578999999 666554 1334555666778888777655
No 29
>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*
Probab=27.56 E-value=37 Score=29.70 Aligned_cols=45 Identities=18% Similarity=0.102 Sum_probs=31.6
Q ss_pred cccCCCeEeccCCeEEe-cCCCCCCCCCCCChHHHHHHHHHHHHHHHHHh
Q psy8945 167 VVDARLRVHGVENLRVV-DASIMPKIVRGNTNAPTIMIAEKAADMIKEDW 215 (219)
Q Consensus 167 VVD~~lrV~Gv~nLrV~-DaSv~P~~~~~np~~t~~~iaer~a~~i~~~~ 215 (219)
+||..+||-+++|+|++ |+.--|.. ...+++.-|..+|+.|.+++
T Consensus 341 ~vn~~~rvt~~pgvya~GD~~~gp~~----~i~~a~~~g~~~a~~i~~~l 386 (456)
T 1lqt_A 341 IPNVGGRINGSPNEYVVGWIKRGPTG----VIGTNKKDAQDTVDTLIKNL 386 (456)
T ss_dssp CCEETTEETTCSSEEECTHHHHCSCS----CTTHHHHHHHHHHHHHHHHH
T ss_pred eECCCCcCCCCCCEEEEeccCCCCch----hHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999 66533432 12356667777777776665
No 30
>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}
Probab=27.29 E-value=1e+02 Score=24.59 Aligned_cols=45 Identities=29% Similarity=0.161 Sum_probs=31.3
Q ss_pred cccCCCeEeccCCeEEe-cCCCCCCCCCCCChHHHHHHHHHHHHHHHHHhc
Q psy8945 167 VVDARLRVHGVENLRVV-DASIMPKIVRGNTNAPTIMIAEKAADMIKEDWI 216 (219)
Q Consensus 167 VVD~~lrV~Gv~nLrV~-DaSv~P~~~~~np~~t~~~iaer~a~~i~~~~~ 216 (219)
+||+.++ -.++|+|++ |+.-.| .......+.-|..+|..|.+.+.
T Consensus 271 ~vd~~~~-t~~~~vya~GD~~~~~----~~~~~~A~~~g~~aa~~i~~~l~ 316 (319)
T 3cty_A 271 VVDSRQR-TSVPGVYAAGDVTSGN----FAQIASAVGDGCKAALSLYSDSI 316 (319)
T ss_dssp CCCTTCB-CSSTTEEECSTTBTTC----CCCHHHHHHHHHHHHHHHHHHHT
T ss_pred eCCCCCc-cCCCCEEEeecccCcc----hhhHHHHHHHHHHHHHHHHHHhh
Confidence 5788777 478999999 665443 12344566677888888877764
No 31
>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}
Probab=25.91 E-value=1e+02 Score=24.01 Aligned_cols=44 Identities=11% Similarity=0.045 Sum_probs=30.8
Q ss_pred cccCCCeEeccCCeEEe-cCCCCCCCCCCCChHHHHHHHHHHHHHHHHHhc
Q psy8945 167 VVDARLRVHGVENLRVV-DASIMPKIVRGNTNAPTIMIAEKAADMIKEDWI 216 (219)
Q Consensus 167 VVD~~lrV~Gv~nLrV~-DaSv~P~~~~~np~~t~~~iaer~a~~i~~~~~ 216 (219)
+||.+++ -.++|+|++ |+.-.| ......+.-|..+|..|.+.+.
T Consensus 248 ~vd~~~~-t~~~~vya~GD~~~~~-----~~~~~A~~~g~~aa~~i~~~l~ 292 (297)
T 3fbs_A 248 VTDPMKQ-TTARGIFACGDVARPA-----GSVALAVGDGAMAGAAAHRSIL 292 (297)
T ss_dssp CCCTTCB-CSSTTEEECSGGGCTT-----CCHHHHHHHHHHHHHHHHHHHH
T ss_pred EeCCCCc-cCCCCEEEEeecCCch-----HHHHHHHHhHHHHHHHHHHHHh
Confidence 4677766 578999999 766553 3455666677888888877653
No 32
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=23.61 E-value=1.4e+02 Score=21.83 Aligned_cols=39 Identities=15% Similarity=0.084 Sum_probs=26.7
Q ss_pred EeccCCeEEe-cCCCCCCCCCCCChHHHHHHHHHHHHHHHHHhccC
Q psy8945 174 VHGVENLRVV-DASIMPKIVRGNTNAPTIMIAEKAADMIKEDWILD 218 (219)
Q Consensus 174 V~Gv~nLrV~-DaSv~P~~~~~np~~t~~~iaer~a~~i~~~~~~~ 218 (219)
.....||+++ |+- .+.-....+.-|.++|+.|.+.++.+
T Consensus 291 ~~~~~~v~l~GDa~------~g~gv~~A~~sG~~aA~~I~~~L~~e 330 (336)
T 3kkj_A 291 SDADLGIYVCGDWC------LSGRVEGAWLSGQEAARRLLEHLQLE 330 (336)
T ss_dssp EETTTTEEECCGGG------TTSSHHHHHHHHHHHHHHHHHHTTC-
T ss_pred eeCCCCEEEEeccc------CCcCHHHHHHHHHHHHHHHHHHhhcc
Confidence 3345678887 762 22335567888999999999988764
No 33
>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...
Probab=22.22 E-value=78 Score=28.99 Aligned_cols=49 Identities=16% Similarity=0.086 Sum_probs=36.4
Q ss_pred cccCCCeEe--------ccCCeEEecC----CCCCC-CCCCCChHHHHHHHHHHHHHHHHHh
Q psy8945 167 VVDARLRVH--------GVENLRVVDA----SIMPK-IVRGNTNAPTIMIAEKAADMIKEDW 215 (219)
Q Consensus 167 VVD~~lrV~--------Gv~nLrV~Da----Sv~P~-~~~~np~~t~~~iaer~a~~i~~~~ 215 (219)
.||.++||. -++|||.+.- |+.-. -+++|..+-++..|.++++.+.+..
T Consensus 371 ~~d~~~~Vl~~~~~~~t~IpGLyAaGE~a~~g~hGanrlggnsL~~~~vfGr~Ag~~aa~~~ 432 (621)
T 2h88_A 371 PTNYKGQVITHVNGEDKVVPGLYACGEAASASVHGANRLGANSLLDLVVFGRACALTIAETC 432 (621)
T ss_dssp EBCTTSEEEEEETTEEEEEEEEEECGGGEECSSSTTSCCTTSHHHHHHHHHHHHHHHHHHHC
T ss_pred eECCCCeEeecccCCCcccCceEEccccccccccCCCCCchHhHHHHHHHHHHHHHHHHHhh
Confidence 488888885 4999999942 44432 2478888999999999988876543
No 34
>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*
Probab=22.04 E-value=1.2e+02 Score=24.05 Aligned_cols=46 Identities=9% Similarity=-0.137 Sum_probs=30.4
Q ss_pred cccCCC----eEeccCCeEEe-cCCCCCCCCCCCChHHHHHHHHHHHHHHHHHhc
Q psy8945 167 VVDARL----RVHGVENLRVV-DASIMPKIVRGNTNAPTIMIAEKAADMIKEDWI 216 (219)
Q Consensus 167 VVD~~l----rV~Gv~nLrV~-DaSv~P~~~~~np~~t~~~iaer~a~~i~~~~~ 216 (219)
+||+.+ +.-.++|+|++ |+.-.| ......++.-|..+|..|.+.+.
T Consensus 264 ~vd~~~~~~~~~t~~~~vya~GD~~~~~----~~~~~~A~~~g~~aa~~i~~~l~ 314 (320)
T 1trb_A 264 KVQSGIHGNATQTSIPGVFAAGDVMDHI----YRQAITSAGTGCMAALDAERYLD 314 (320)
T ss_dssp CCCCSSSSCTTBCSSTTEEECGGGGCSS----SCCHHHHHHHHHHHHHHHHHHHT
T ss_pred EECCCcccccccCCCCCEEEcccccCCc----chhhhhhhccHHHHHHHHHHHHH
Confidence 356665 34568899999 666544 12345566678888888877663
No 35
>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}
Probab=21.42 E-value=1.3e+02 Score=24.27 Aligned_cols=45 Identities=11% Similarity=-0.092 Sum_probs=28.0
Q ss_pred cccCCCeEeccCCeEEe-cCCCCCCCCCCCChHHHHHHHHHHHHHHHHHh
Q psy8945 167 VVDARLRVHGVENLRVV-DASIMPKIVRGNTNAPTIMIAEKAADMIKEDW 215 (219)
Q Consensus 167 VVD~~lrV~Gv~nLrV~-DaSv~P~~~~~np~~t~~~iaer~a~~i~~~~ 215 (219)
+||++++.-..+|+|++ |+.-.| .......+.-|..+|..|.+.+
T Consensus 270 ~vd~~~~~t~~~~iya~GD~~~~~----~~~~~~A~~~g~~aA~~i~~~l 315 (335)
T 2a87_A 270 LVQGRTTSTSLPGVFAAGDLVDRT----YRQAVTAAGSGCAAAIDAERWL 315 (335)
T ss_dssp CCSTTSSBCSSTTEEECGGGTCCS----CCCHHHHHHHHHHHHHHHHHHH
T ss_pred EeCCCCCccCCCCEEEeeecCCcc----HHHHHHHHHhHHHHHHHHHHHh
Confidence 45665556678999999 665443 1234455556777777666544
No 36
>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}
Probab=21.28 E-value=1.4e+02 Score=26.14 Aligned_cols=42 Identities=14% Similarity=0.158 Sum_probs=30.9
Q ss_pred cccCCCeEeccCCeEEe-cCCCCCCCCCCCChHHHHHHHHHHHHHHHHHhc
Q psy8945 167 VVDARLRVHGVENLRVV-DASIMPKIVRGNTNAPTIMIAEKAADMIKEDWI 216 (219)
Q Consensus 167 VVD~~lrV~Gv~nLrV~-DaSv~P~~~~~np~~t~~~iaer~a~~i~~~~~ 216 (219)
+||..++ ..+|+|++ |+.-. ......+.-|..+|+.|...++
T Consensus 335 ~vd~~~~--s~~~vya~GD~~~~------~~~~~A~~~g~~aa~~i~~~lg 377 (493)
T 1y56_A 335 VLDEYHR--IKDGIYVAGSAVSI------KPHYANYLEGKLVGAYILKEFG 377 (493)
T ss_dssp CCCTTSE--EETTEEECSTTTCC------CCHHHHHHHHHHHHHHHHHHTT
T ss_pred ccccccC--cCCCEEEEeccCCc------cCHHHHHHHHHHHHHHHHHHcC
Confidence 4899999 89999999 55432 2456677778888888877654
Done!