RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8945
(219 letters)
>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG
BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP:
c.3.1.2 d.16.1.1
Length = 587
Score = 255 bits (654), Expect = 1e-82
Identities = 50/202 (24%), Positives = 80/202 (39%), Gaps = 10/202 (4%)
Query: 14 SLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPILLKPKSRGYIQLNAT 73
++ +Q+ + + D + I L P +RG + + ++
Sbjct: 392 NVTALKVQYENYRNWLLD------EDVAFAELFMDTEGKINFDLWDLIPFTRGSVHILSS 445
Query: 74 DPLWGPPLIFPKFFTKKPDLDVFVAGMKLGASIVQTEAMQKIHARLVDVSPPQCVFYKFG 133
DP PKFF + DL A KL + AM++ A P +
Sbjct: 446 DPYLWQFANDPKFFLNEFDLLGQAAASKLARDLTSQGAMKEYFAGETL---PGYNLVQNA 502
Query: 134 TWDYWACIAMQFTGTIYHPVGTCKMGPKDDPGSVVDARLRVHGVENLRVVDASIMPKIVR 193
T W+ +Q +H V +C M + G VVDA +V+G + LRV+D SI P V
Sbjct: 503 TLSQWSDYVLQNFRPNWHAVSSCSMMS-RELGGVVDATAKVYGTQGLRVIDGSIPPTQVS 561
Query: 194 GNTNAPTIMIAEKAADMIKEDW 215
+ +A K AD I +D+
Sbjct: 562 SHVMTIFYGMALKVADAILDDY 583
>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A
{Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*
Length = 583
Score = 254 bits (652), Expect = 2e-82
Identities = 50/206 (24%), Positives = 73/206 (35%), Gaps = 14/206 (6%)
Query: 10 RLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPILLKPKSRGYIQ 69
L + + ++ + L P +RGY+
Sbjct: 388 NTTALLIQYENYRDWIVNHNVAYSELFLDT----------AGVASFDVWDLLPFTRGYVH 437
Query: 70 LNATDPLWGPPLIFPKFFTKKPDLDVFVAGMKLGASIVQTEAMQKIHARLVDVSPPQCVF 129
+ DP P++F + DL A +L +I + AMQ A P
Sbjct: 438 ILDKDPYLHHFAYDPQYFLNELDLLGQAAATQLARNISNSGAMQTYFAGETI---PGDNL 494
Query: 130 YKFGTWDYWACIAMQFTGTIYHPVGTCKMGPKDDPGSVVDARLRVHGVENLRVVDASIMP 189
W YH VGTC M P + G VVD RV+GV+ LRV+D SI P
Sbjct: 495 AYDADLSAWTEYIPYHFRPNYHGVGTCSMMP-KEMGGVVDNAARVYGVQGLRVIDGSIPP 553
Query: 190 KIVRGNTNAPTIMIAEKAADMIKEDW 215
+ + +A K +D I ED+
Sbjct: 554 TQMSSHVMTVFYAMALKISDAILEDY 579
>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase,
flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}
Length = 566
Score = 247 bits (633), Expect = 1e-79
Identities = 50/204 (24%), Positives = 80/204 (39%), Gaps = 17/204 (8%)
Query: 11 LADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPILLKPKSRGYIQL 70
A + + I P ++V L+ P +RG I+L
Sbjct: 379 PAAGPNSAHWETIFSNQWFHPAIPRP-----------DTGSFMSVTNALISPVARGDIKL 427
Query: 71 NATDPLWGPPLIFPKFFTKKPDLDVFVAGMKLGASIVQTEAMQKIHARLVDVSPPQCVFY 130
++P PLI P++ + + D+ + +K + +A R D
Sbjct: 428 ATSNPFD-KPLINPQYLSTEFDIFTMIQAVKSNLRFLSGQAWADFVIRPFDPRLRDP--- 483
Query: 131 KFGTWDYWACIAMQFTGTIYHPVGTCKMGPKDDPGSVVDARLRVHGVENLRVVDASIMPK 190
TI+HPVGT M P+ VVD L+V GV+ LR+VD SI+P
Sbjct: 484 --TDDAAIESYIRDNANTIFHPVGTASMSPRGASWGVVDPDLKVKGVDGLRIVDGSILPF 541
Query: 191 IVRGNTNAPTIMIAEKAADMIKED 214
+T P ++ ++ AD+IK D
Sbjct: 542 APNAHTQGPIYLVGKQGADLIKAD 565
>3q9t_A Choline dehydrogenase and related flavoproteins;
glucose-methanol-choline oxidoreductase family, formate
OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A
{Aspergillus oryzae}
Length = 577
Score = 238 bits (609), Expect = 6e-76
Identities = 52/213 (24%), Positives = 83/213 (38%), Gaps = 14/213 (6%)
Query: 5 DVECGRLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPILLKPKS 64
+ P Q H + V + T A + D +TV L++P S
Sbjct: 373 KAKAANGGKDPFSPLGQPHFELDFVCMFGT----AFQWHFPTPKTGDHLTVVVDLVRPIS 428
Query: 65 R-GYIQLNATDPLWGPPLIFPKFFTKKPDLDVFVAGMKLGASIV-QTEAMQKIHARLVDV 122
G + LN+ DP P I FF D+ G++ ++ + E + +
Sbjct: 429 DPGEVTLNSADPFQ-QPNINLNFFANDLDIIAMREGIRFSYDLLFKGEGFKDLVESEYPW 487
Query: 123 SPPQCVFYKFGTWDYWACIAMQFTGTIYHPVGTCKMGPKDDPGSVVDARLRVHGVENLRV 182
P + + T +HP GT ++ + VVD +L+VHG++ LRV
Sbjct: 488 EMP------LDSDKEMHRAVLDRCQTAFHPTGTARLSK-NIDQGVVDPKLKVHGIKKLRV 540
Query: 183 VDASIMPKIVRGNTNAPTIMIAEKAADMIKEDW 215
DAS++P I + EK ADMIK +
Sbjct: 541 ADASVIPIIPDCRIQNSVYAVGEKCADMIKAEH 573
>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently
linked FAD, C4A-adduct, flavoprotein, oxidoreductase;
HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A*
3ljp_A*
Length = 546
Score = 234 bits (599), Expect = 9e-75
Identities = 63/213 (29%), Positives = 101/213 (47%), Gaps = 19/213 (8%)
Query: 10 RLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPILLKPKSRGYIQ 69
D LD PD+ H+ + ++ +G ++ P + +SRG ++
Sbjct: 338 PTEDGLDRPDLMMHYGSVPFDMNTLRHGYPTT--------ENGFSLTPNVTHARSRGTVR 389
Query: 70 LNATDPLWGPPLIFPKFFT--KKPDLDVFVAGMKLGASIVQTEAMQKIHARLVDVSP-PQ 126
L + D P++ P++FT + D+ V VAG++ I AM + R ++SP +
Sbjct: 390 LRSRDFRD-KPMVDPRYFTDPEGHDMRVMVAGIRKAREIAAQPAMAEWTGR--ELSPGVE 446
Query: 127 CVFYKFGTWDYWACIAMQFTGTIYHPVGTCKMGPKDDPGSVVDARLRVHGVENLRVVDAS 186
T + + T+YHPVGT +MG +D S +D LRV GV LRV DAS
Sbjct: 447 AQ-----TDEELQDYIRKTHNTVYHPVGTVRMGAVEDEMSPLDPELRVKGVTGLRVADAS 501
Query: 187 IMPKIVRGNTNAPTIMIAEKAADMIKEDWILDR 219
+MP+ V N N +MI E+ AD+I+ +
Sbjct: 502 VMPEHVTVNPNITVMMIGERCADLIRSARAGET 534
>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding,
oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}
Length = 526
Score = 222 bits (569), Expect = 2e-70
Identities = 47/201 (23%), Positives = 80/201 (39%), Gaps = 20/201 (9%)
Query: 14 SLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPILLKPKSRGYIQLNAT 73
+ P+I + + +P A ++ + P SRG ++++
Sbjct: 343 AAGQPEIVVGCGVAPIVS---------ESFPAPAAGS-AYSLLFGITHPTSRGSVRISGP 392
Query: 74 DPLWGPPLIFPKFFTKKPDLDVFVAGMKLGASIVQTEAMQKIHARLVDVSPPQCVFYKFG 133
+ +I P + D + F ++ +I + + R + P
Sbjct: 393 ELGD-RLIIDPAYLQTGRDRERFRRALEASRTIGHRDELAGWRERELLPGTPN------- 444
Query: 134 TWDYWACIAMQFTGTIYHPVGTCKMGPKDDPGSVVDARLRVHGVENLRVVDASIMPKIVR 193
+ + T +HP GTC+MG DP +VVDA LR+ ++NL VVDASIMP +
Sbjct: 445 SAAEMDDFIARSVITHHHPCGTCRMGK--DPDAVVDANLRLKALDNLFVVDASIMPNLTA 502
Query: 194 GNTNAPTIMIAEKAADMIKED 214
G +A + IAE A
Sbjct: 503 GPIHAAVLAIAETFARQYHHH 523
>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond,
cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A
{Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A*
3gdn_A*
Length = 536
Score = 214 bits (548), Expect = 3e-67
Identities = 38/212 (17%), Positives = 67/212 (31%), Gaps = 28/212 (13%)
Query: 14 SLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPILLKPKSRGYIQLNA- 72
SL F P S P + P S G + L +
Sbjct: 332 SLPFTTPPFGFFPSSSY---------------PLPNSTFAHFASKVAGPLSYGSLTLKSS 376
Query: 73 TDPLWGPPLIFPKFFTKKPDLDVFVAGMKLGASIVQTEAMQKIHARLVDVSPPQCVFYKF 132
++ P + +++ DL V+GMK ++ T+A++ + +
Sbjct: 377 SNVRV-SPNVKFNYYSNLTDLSHCVSGMKKIGELLSTDALKPYKVEDLPGVEGFNILGIP 435
Query: 133 GTWD-----YWACIAMQFTGTIYHPVGTCKMGPKDDPGSVVDARLRVHGVENLRVVDASI 187
D + + + +H G C +G V+D RV G+ LRVVD S
Sbjct: 436 LPKDQTDDAAFETFCRESVASYWHYHGGCLVG------KVLDGDFRVTGINALRVVDGST 489
Query: 188 MPKIVRGNTNAPTIMIAEKAADMIKEDWILDR 219
P + +M+ I ++
Sbjct: 490 FPYTPASHPQGFYLMLGRYVGIKILQERSASD 521
>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold,
alpha/beta structure, rossman 6-hydroxylated FAD,
oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A
{Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1
PDB: 1naa_A*
Length = 546
Score = 205 bits (524), Expect = 1e-63
Identities = 44/207 (21%), Positives = 70/207 (33%), Gaps = 28/207 (13%)
Query: 10 RLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPIL-LKPKSRGYI 68
Q P + + P NAS T+ L +SRG I
Sbjct: 362 YSGSDGFTRYAQGTVRPGAASVNSSLPYNASQ----------IFTITVYLSTGIQSRGRI 411
Query: 69 QLNATDPLWGPPLIFPKFFTKKPDLDVFVAGMKLGAS-IVQTEAMQKIHARLVDVSPPQC 127
++A ++ P + D V + + S I + I +P
Sbjct: 412 GIDAALR---GTVLTPPWLVNPVDKTVLLQALHDVVSNIGSIPGLTMI-------TPDVT 461
Query: 128 VFYKFGTWDYWACIAMQFTGTIYHPVGTCKMGPKDDPGSVVDARLRVHGVENLRVVDASI 187
T + + T H V + +G +VVD+ ++V G NL +VDA I
Sbjct: 462 Q-----TLEEYVDAYDPATMNSNHWVSSTTIGS-SPQSAVVDSNVKVFGTNNLFIVDAGI 515
Query: 188 MPKIVRGNTNAPTIMIAEKAADMIKED 214
+P + GN + AE+AA I
Sbjct: 516 IPHLPTGNPQGTLMSAAEQAAAKILAL 542
>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism,
oxidoreductase, atomic RESO; HET: FAD; 0.92A
{Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A*
1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A*
1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*
Length = 504
Score = 83.6 bits (206), Expect = 6e-19
Identities = 30/106 (28%), Positives = 44/106 (41%), Gaps = 12/106 (11%)
Query: 110 EAMQKIHARLVDVSPPQCVFYKFGTWDYWACIAMQFTGTIYHPVGTCKMGPKDDPGSVVD 169
A + + R+ + + FGT A F YHP+G C +G D
Sbjct: 406 NAAKALFDRINKANGTIYRYDLFGTQLKAF--ADDFC---YHPLGGCVLG------KATD 454
Query: 170 ARLRVHGVENLRVVDASIMPKIVRGNTNAPTIMIAEKAADMI-KED 214
RV G +NL V D S++P V N +AE+ + I K+D
Sbjct: 455 DYGRVAGYKNLYVTDGSLIPGSVGVNPFVTITALAERNVERIIKQD 500
>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer,
GMC oxidoredu PHBH fold, rossmann domain,
oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes
ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A*
2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A*
3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A*
3fdy_A* ...
Length = 623
Score = 72.2 bits (176), Expect = 5e-15
Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 3/87 (3%)
Query: 131 KFGTWDYWACIAMQFTGTIYHPVGTCKMG--PKDDPGSVVDARLRVHGVENLRVVDASIM 188
K G + + G + H GT +MG K+D V+ RV G +NL + +
Sbjct: 528 KIGGFLPGSLPQFMEPGLVLHLGGTHRMGFDEKED-NCCVNTDSRVFGFKNLFLGGCGNI 586
Query: 189 PKIVRGNTNAPTIMIAEKAADMIKEDW 215
P N + +A K+ + IK+++
Sbjct: 587 PTAYGANPTLTAMSLAIKSCEYIKQNF 613
>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD;
1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1
PDB: 3cox_A*
Length = 507
Score = 66.7 bits (162), Expect = 4e-13
Identities = 18/65 (27%), Positives = 25/65 (38%), Gaps = 6/65 (9%)
Query: 147 GTIYHPVGTCKMGPKDDPGSVVDARLRVHGVENLRVVDASIMPKIVRGNTNAPTIMIAEK 206
YHP+G + D R+ L VVD S++P V N +AE+
Sbjct: 443 DFTYHPLGGVLLN------KATDNFGRLPEYPGLYVVDGSLVPGNVGVNPFVTITALAER 496
Query: 207 AADMI 211
D I
Sbjct: 497 NMDKI 501
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.7 bits (100), Expect = 5e-05
Identities = 44/242 (18%), Positives = 65/242 (26%), Gaps = 96/242 (39%)
Query: 11 LADSLD----VPDIQFHHDPM-SVRDWITNPVNA--SSTNMSPFAYYDGITVRPILLKPK 63
L DSL+ VP PM S+ + V + TN L
Sbjct: 324 LEDSLENNEGVPS------PMLSISNLTQEQVQDYVNKTNSH--------------LPAG 363
Query: 64 SRGYIQL-NATDP--LWGPPLIFPKFFTKKPDLDVFVA---GMKLGASIVQTEA--MQ-- 113
+ I L N + GPP L K + + Q+ +
Sbjct: 364 KQVEISLVNGAKNLVVSGPPQ----------SLYGLNLTLRKAKAPSGLDQSRIPFSERK 413
Query: 114 -KIHARLVDVSPPQCVFYKFGTWDYWACIAMQFTGTIYH-P--VGTCKMGPKDDPGSVVD 169
K R + V+ P +H V + KD + V
Sbjct: 414 LKFSNRFLPVASP------------------------FHSHLLVPASDLINKDLVKNNVS 449
Query: 170 ---ARLR--VHGVE---NLRVVDASIMPKIVRGNTNAPTIMIAEK-----AADMIKEDWI 216
++ V+ +LRV+ SI +IV I K I
Sbjct: 450 FNAKDIQIPVYDTFDGSDLRVLSGSISERIVD--------CIIRLPVKWETTTQFKATHI 501
Query: 217 LD 218
LD
Sbjct: 502 LD 503
Score = 35.0 bits (80), Expect = 0.019
Identities = 25/198 (12%), Positives = 56/198 (28%), Gaps = 57/198 (28%)
Query: 10 RLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVR-PILLKPKSRGYI 68
L + + F +++ +W+ NP N + Y I + P++ G I
Sbjct: 197 ELIRTTLDAEKVFTQ-GLNILEWLENPSNTPDKD-----YLLSIPISCPLI------GVI 244
Query: 69 QLNATDPLWGPPLIFPKFFTKKPD--LDVFVAGMKLGASIVQTEAMQKIHARLVDVSPPQ 126
QL ++ K P +V A + +
Sbjct: 245 QLAHY-------VVTAKLLGFTPGELRSYLKGATGHSQGLVT--------AVAIAET--- 286
Query: 127 CVFYKFGTWDYWACIAMQFTGTIYHPVGTCKMGPKDDPGSVVDARLRVHGVENLRVVDAS 186
+W+ + + ++ +G +R + + S
Sbjct: 287 ------DSWESFFVSVRKAITVLFF-IG-----------------VRCYEAYPNTSLPPS 322
Query: 187 IMPKIVRGNTNAPTIMIA 204
I+ + N P+ M++
Sbjct: 323 ILEDSLENNEGVPSPMLS 340
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 38.3 bits (88), Expect = 0.002
Identities = 17/105 (16%), Positives = 29/105 (27%), Gaps = 29/105 (27%)
Query: 50 YDGITVRPILLKPKSRGYIQLNATDPLWGPPLIFPKFFTK---------------KPDLD 94
I +R YI+ D L+ +F K+ +P +
Sbjct: 95 MSPIKTEQRQPSMMTRMYIE--QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKN 152
Query: 95 VFVAGMK-LGASIVQTEAMQKIHARLVDVSPPQCVFYKFGTWDYW 138
V + G+ G + V + QC F +W
Sbjct: 153 VLIDGVLGSGKTWVALDVCLS--------YKVQCKMD-FKI--FW 186
Score = 32.5 bits (73), Expect = 0.11
Identities = 33/218 (15%), Positives = 64/218 (29%), Gaps = 66/218 (30%)
Query: 1 MVLSDVECGRLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPILL 60
+VL +V+ + ++ ++ S + +T + + T I L
Sbjct: 248 LVLLNVQNAKAWNAFNL----------SCKILLT------TRFKQVTDFLSAATTTHISL 291
Query: 61 KPKSRGYIQLNATDPLWGPPLIFPKFFTKKPDLDVFVAGMKLGASIVQTE--AMQKIHAR 118
S + K+ +P L ++ T + I
Sbjct: 292 DHHSMTLTPDEVKS-------LLLKYLDCRPQ--------DLPREVLTTNPRRLSIIAES 336
Query: 119 LVDVSPPQCVFYKFGTWDYWACIAMQFTGTIYHPVGTCKMGPKDDPGSVVDARLRVHGVE 178
+ D TWD W K D +++++ L V
Sbjct: 337 IRD---------GLATWDNW------------------KHVNCDKLTTIIESSLNVLEPA 369
Query: 179 NLRV--VDASIMPKIVRGNTNAPTIMIAEKAADMIKED 214
R S+ P + + PTI+++ D+IK D
Sbjct: 370 EYRKMFDRLSVFPP----SAHIPTILLSLIWFDVIKSD 403
Score = 31.0 bits (69), Expect = 0.33
Identities = 11/62 (17%), Positives = 18/62 (29%), Gaps = 12/62 (19%)
Query: 107 VQTEAMQKIHARLVDVSPPQCVFYKFG-TWDYWACIAMQFTGTIYHPVG----TCKMGPK 161
V+ E +H +VD Y T+D I Y +G + +
Sbjct: 437 VKLENEYALHRSIVD-------HYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPER 489
Query: 162 DD 163
Sbjct: 490 MT 491
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 30.2 bits (68), Expect = 0.53
Identities = 18/135 (13%), Positives = 32/135 (23%), Gaps = 41/135 (30%)
Query: 92 DLDVFVAGMKLGASIVQTEAMQKIHARLVD---VSPPQC------------VFYKFGTWD 136
+ V G G+ + A++ + V
Sbjct: 1038 YVHVSEVGNCSGSGMGGVSALRGMFKDRFKDEPVQNDILQESFINTMSAWVNMLLIS--- 1094
Query: 137 YWACIAMQFTGTIYHPVGTCKMGPKDDPGSVVDA-RLRVHGVENLRVVDASIMPKIVRGN 195
+G I PVG C + SV + G A I + G
Sbjct: 1095 --------SSGPIKTPVGACATSVE----SVDIGVETILSG-------KARIC---IVGG 1132
Query: 196 TNAPTIMIAEKAADM 210
+ + + +M
Sbjct: 1133 YDDFQEEGSFEFGNM 1147
>2qjw_A Uncharacterized protein XCC1541; putative hydrolase of the
alpha/beta superfamily, structural genomics; HET: MSE
TLA P6G; 1.35A {Xanthomonas campestris PV}
Length = 176
Score = 26.4 bits (58), Expect = 5.8
Identities = 21/97 (21%), Positives = 31/97 (31%), Gaps = 16/97 (16%)
Query: 91 PDLDVFVAGMKLGASIVQTEAMQKIHARLVDVSPPQCVFYKFGTWDYWACIAMQFTGTIY 150
V +AG LG+ I ++Q L + PP A A +I
Sbjct: 72 EKGPVVLAGSSLGSYIAAQVSLQVPTRALFLMVPP------TKMGPLPALDAAAVPISIV 125
Query: 151 HPVGTCKMGPKDD--PGSVVDARLRVHGVENLRVVDA 185
H D+ P + V A + L +VD
Sbjct: 126 H-------AWHDELIPAADVIAWAQARSAR-LLLVDD 154
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.139 0.442
Gapped
Lambda K H
0.267 0.0460 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,605,385
Number of extensions: 214688
Number of successful extensions: 428
Number of sequences better than 10.0: 1
Number of HSP's gapped: 399
Number of HSP's successfully gapped: 25
Length of query: 219
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 129
Effective length of database: 4,188,903
Effective search space: 540368487
Effective search space used: 540368487
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.6 bits)