RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8945
(219 letters)
>d1cf3a2 d.16.1.1 (A:325-520) Glucose oxidase {Aspergillus niger
[TaxId: 5061]}
Length = 196
Score = 92.9 bits (230), Expect = 4e-24
Identities = 28/144 (19%), Positives = 41/144 (28%), Gaps = 13/144 (9%)
Query: 12 ADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPILLKPKSRGYIQLN 71
L + + V S + + L P +RGY+ +
Sbjct: 66 TALLIQYENYRDWIV-------NHNVAYSELFLDTA---GVASFDVWDLLPFTRGYVHIL 115
Query: 72 ATDPLWGPPLIFPKFFTKKPDLDVFVAGMKLGASIVQTEAMQKIHARLVDVSPPQCVFYK 131
DP P++F + DL A +L +I + AMQ A P
Sbjct: 116 DKDPYLHHFAYDPQYFLNELDLLGQAAATQLARNISNSGAMQTYFAGET---IPGDNLAY 172
Query: 132 FGTWDYWACIAMQFTGTIYHPVGT 155
W YH VGT
Sbjct: 173 DADLSAWTEYIPYHFRPNYHGVGT 196
>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus
niger [TaxId: 5061]}
Length = 385
Score = 96.1 bits (238), Expect = 5e-24
Identities = 27/68 (39%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 148 TIYHPVGTCKMGPKDDPGSVVDARLRVHGVENLRVVDASIMPKIVRGNTNAPTIMIAEKA 207
+ PVG C M P + G VVD RV+GV+ LRV+D SI P + + +A K
Sbjct: 315 VVDLPVGLCSMMP-KEMGGVVDNAARVYGVQGLRVIDGSIPPTQMSSHVMTVFYAMALKI 373
Query: 208 ADMIKEDW 215
+D I ED+
Sbjct: 374 SDAILEDY 381
>d1gpea2 d.16.1.1 (A:329-524) Glucose oxidase {Penicillium
amagasakiense [TaxId: 63559]}
Length = 196
Score = 92.1 bits (228), Expect = 6e-24
Identities = 26/146 (17%), Positives = 45/146 (30%), Gaps = 13/146 (8%)
Query: 10 RLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPILLKPKSRGYIQ 69
+ + + W+ + I L P +RG +
Sbjct: 64 NVTALKVQYENYRN--------WL--LDEDVAFAELFMDTEGKINFDLWDLIPFTRGSVH 113
Query: 70 LNATDPLWGPPLIFPKFFTKKPDLDVFVAGMKLGASIVQTEAMQKIHARLVDVSPPQCVF 129
+ ++DP PKFF + DL A KL + AM++ A P
Sbjct: 114 ILSSDPYLWQFANDPKFFLNEFDLLGQAAASKLARDLTSQGAMKEYFAGET---LPGYNL 170
Query: 130 YKFGTWDYWACIAMQFTGTIYHPVGT 155
+ T W+ +Q +H V +
Sbjct: 171 VQNATLSQWSDYVLQNFRPNWHAVSS 196
>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of
flavocytochrome cellobiose dehydrogenase (CDH),
FAD-binding domain {Fungus (Phanerochaete chrysosporium)
[TaxId: 5306]}
Length = 360
Score = 90.5 bits (223), Expect = 4e-22
Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 148 TIYHPVGTCKMGPKDDPGSVVDARLRVHGVENLRVVDASIMPKIVRGNTNAPTIMIAEKA 207
I PVG +G +VVD+ ++V G NL +VDA I+P + GN + AE+A
Sbjct: 291 WINLPVGMTTIGS-SPQSAVVDSNVKVFGTNNLFIVDAGIIPHLPTGNPQGTLMSAAEQA 349
Query: 208 ADMI 211
A I
Sbjct: 350 AAKI 353
>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium
amagasakiense [TaxId: 63559]}
Length = 391
Score = 80.7 bits (198), Expect = 1e-18
Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 151 HPVGTCKMGPKDDPGSVVDARLRVHGVENLRVVDASIMPKIVRGNTNAPTIMIAEKAADM 210
PVG C M + G VVDA +V+G + LRV+D SI P V + +A K AD
Sbjct: 324 LPVGICSMMS-RELGGVVDATAKVYGTQGLRVIDGSIPPTQVSSHVMTIFYGMALKVADA 382
Query: 211 IKEDWI 216
I +D+
Sbjct: 383 ILDDYA 388
>d1ju2a2 d.16.1.1 (A:294-463) Hydroxynitrile lyase {Almond (Prunus
dulcis) [TaxId: 3755]}
Length = 170
Score = 72.1 bits (176), Expect = 1e-16
Identities = 18/142 (12%), Positives = 42/142 (29%), Gaps = 15/142 (10%)
Query: 18 PDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPILLKPKSRGYIQLNATDPLW 77
+ F P ++ P + P S G + L ++ +
Sbjct: 38 SSLPFTTPPFGFFP----------SSSYPLPNSTFAHFASKVAGPLSYGSLTLKSSSNVR 87
Query: 78 GPPLIFPKFFTKKPDLDVFVAGMKLGASIVQTEAMQKIHARLVDVSPPQCVFYKFGTW-- 135
P + +++ DL V+GMK ++ T+A++ + +
Sbjct: 88 VSPNVKFNYYSNLTDLSHCVSGMKKIGELLSTDALKPYKVEDLPGVEGFNILGIPLPKDQ 147
Query: 136 ---DYWACIAMQFTGTIYHPVG 154
+ + + +H G
Sbjct: 148 TDDAAFETFCRESVASYWHYHG 169
>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot
fungus (Peniophora sp. SG) [TaxId: 204723]}
Length = 379
Score = 73.9 bits (180), Expect = 4e-16
Identities = 18/113 (15%), Positives = 40/113 (35%), Gaps = 6/113 (5%)
Query: 108 QTEAMQKIHARLVDVSPPQ----CVFYKFGTWDYWACIAMQFTGTIYHPVGTCKMGPKDD 163
+ +I A + ++ + G + +G+ +MG +
Sbjct: 262 ISGDRFEIKADVYVLTAGAVHNTQLLVNSGFGQLG-RPNPTNPPELLPSLGSHRMGFDEK 320
Query: 164 P-GSVVDARLRVHGVENLRVVDASIMPKIVRGNTNAPTIMIAEKAADMIKEDW 215
V+ RV G +NL + +P N + +A K+ + IK+++
Sbjct: 321 EDNCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLAIKSCEYIKQNF 373
>d1kdga2 d.16.1.1 (A:513-693) Flavoprotein domain of flavocytochrome
cellobiose dehydrogenase (CDH), substrate-binding domain
{Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}
Length = 181
Score = 54.8 bits (131), Expect = 4e-10
Identities = 21/142 (14%), Positives = 40/142 (28%), Gaps = 23/142 (16%)
Query: 14 SLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPILLKPKSRGYIQLNAT 73
Q P + + P NAS + Y +SRG I ++A
Sbjct: 63 DGFTRYAQGTVRPGAASVNSSLPYNASQI-FTITVYL--------STGIQSRGRIGIDAA 113
Query: 74 DPLWGPPLIFPKFFTKKPDLDVFVAGMKLGASIVQTEAMQKIHARLVDVSPPQCVFYKFG 133
++ P + D V + + S + + + ++P
Sbjct: 114 LR---GTVLTPPWLVNPVDKTVLLQALHDVVSNIGSIPGLTM------ITPDVTQ----- 159
Query: 134 TWDYWACIAMQFTGTIYHPVGT 155
T + + T H V +
Sbjct: 160 TLEEYVDAYDPATMNSNHWVSS 181
>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC
family {Streptomyces sp. [TaxId: 1931]}
Length = 367
Score = 28.0 bits (61), Expect = 0.96
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 7/57 (12%)
Query: 162 DDPGSVVDARLRVHGVENLRVVDASIMPKIVRGNTNAPTIMI---AEK-AADMIKED 214
G D RV G +NL V D S++P V N P + I AE+ +IK+D
Sbjct: 312 CVLGKATDDYGRVAGYKNLYVTDGSLIPGSVGVN---PFVTITALAERNVERIIKQD 365
>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC
family {Brevibacterium sterolicum [TaxId: 1702]}
Length = 370
Score = 27.2 bits (59), Expect = 1.8
Identities = 8/29 (27%), Positives = 11/29 (37%)
Query: 162 DDPGSVVDARLRVHGVENLRVVDASIMPK 190
D R+ L VVD S++P
Sbjct: 316 VLLNKATDNFGRLPEYPGLYVVDGSLVPG 344
>d2efva1 a.43.1.12 (A:6-87) Uncharacterized protein MJ0366
{Methanococcus jannaschii [TaxId: 2190]}
Length = 82
Score = 24.7 bits (54), Expect = 3.1
Identities = 9/45 (20%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 169 DARLRVHGVENLRVVDASIMPKIVRGNTN-APTIMIAEKAADMIK 212
R +H +EN+ VD + + + +I + E+ +I+
Sbjct: 20 KLRYLLHKLENVENVDIDTLRRAIEAEKKYKRSITLTEEEEVIIQ 64
>d2ia1a1 d.359.1.1 (A:1-166) Uncharacterized protein BH3703
{Bacillus halodurans [TaxId: 86665]}
Length = 166
Score = 25.1 bits (55), Expect = 5.2
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 203 IAEKAADMIKEDW 215
IA+ DMI E+W
Sbjct: 12 IAQLIIDMIPEEW 24
>d1d6za1 b.30.2.1 (A:301-724) Copper amine oxidase, domain 3
{Escherichia coli [TaxId: 562]}
Length = 424
Score = 24.9 bits (54), Expect = 9.9
Identities = 6/31 (19%), Positives = 11/31 (35%), Gaps = 1/31 (3%)
Query: 22 FHHDPMSVRDWITNPVNASSTNMSPFAYYDG 52
H +W P T + P+ ++D
Sbjct: 387 TTHVA-RAEEWPIMPTEWVHTLLKPWNFFDE 416
>d1cjya2 c.19.1.2 (A:142-721) Cytosolic phospholipase A2 catalytic
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 580
Score = 24.9 bits (54), Expect = 10.0
Identities = 7/30 (23%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 130 YKFGTWDYWACIAMQFTGTIYHPVGTCKMG 159
Y+ G Y +A G+ + +GT
Sbjct: 211 YEIGMAKYGTFMAPDLFGSKFF-MGTVVKK 239
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.139 0.442
Gapped
Lambda K H
0.267 0.0452 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 884,097
Number of extensions: 40627
Number of successful extensions: 103
Number of sequences better than 10.0: 1
Number of HSP's gapped: 95
Number of HSP's successfully gapped: 19
Length of query: 219
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 137
Effective length of database: 1,281,736
Effective search space: 175597832
Effective search space used: 175597832
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.1 bits)