BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8949
(493 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BNX|A Chain A, Crystal Structure Of The Dimeric Regulatory Domain Of
Mouse Diaphaneous-Related Formin (Drf), Mdia1
pdb|2BNX|B Chain B, Crystal Structure Of The Dimeric Regulatory Domain Of
Mouse Diaphaneous-Related Formin (Drf), Mdia1
Length = 386
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 75/144 (52%), Gaps = 6/144 (4%)
Query: 168 HVCILCLRAIMNNKYGLNMVIKHTEAINSIALSLMHKSLRTKALVLELLAAICLVTGG-- 225
H I CL+A MNNK+G+ +++ E I + ++ +LL+A+C++
Sbjct: 76 HEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPED 135
Query: 226 -HEIILAAFDNFKEICQESKRFETLMDYFMNYEVFHIEFMVACMQFINIVVHSVEDMNFR 284
+E +L A E+ E +RF+ L+D + I V C+Q IN ++ E+++FR
Sbjct: 136 MNERVLEAMTERAEM-DEVERFQPLLDGLKSG--TSIALKVGCLQLINALITPAEELDFR 192
Query: 285 VHLQYEFSRLGLDSYLDKLRHTET 308
VH++ E RLGL L +LR E
Sbjct: 193 VHIRSELMRLGLHQVLQELREIEN 216
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 51/88 (57%), Gaps = 7/88 (7%)
Query: 339 EDMNFRVHLQYEFSRLGLDSY------LDKLRHTESEELQVACMQFINIVVHSVEDMNFR 392
EDMN RV L+ R +D LD L+ S L+V C+Q IN ++ E+++FR
Sbjct: 134 EDMNERV-LEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFR 192
Query: 393 VHLQYEFSRLGLDSYLDKLRHTESEELQ 420
VH++ E RLGL L +LR E+E+++
Sbjct: 193 VHIRSELMRLGLHQVLQELREIENEDMK 220
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 37/56 (66%)
Query: 323 VQVACMQFINIVVHSVEDMNFRVHLQYEFSRLGLDSYLDKLRHTESEELQVACMQF 378
++V C+Q IN ++ E+++FRVH++ E RLGL L +LR E+E+++V F
Sbjct: 171 LKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMKVQLCVF 226
>pdb|3EG5|B Chain B, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
pdb|3EG5|D Chain D, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
Length = 383
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 75/144 (52%), Gaps = 6/144 (4%)
Query: 168 HVCILCLRAIMNNKYGLNMVIKHTEAINSIALSLMHKSLRTKALVLELLAAICLVTGGHE 227
H I CL+A MNNK+G+ +++ E I + ++ +LL+A+C++ +
Sbjct: 138 HEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPED 197
Query: 228 I---ILAAFDNFKEICQESKRFETLMDYFMNYEVFHIEFMVACMQFINIVVHSVEDMNFR 284
+ +L A E+ E +RF+ L+D + I V C+Q IN ++ E+++FR
Sbjct: 198 MNERVLEAMTERAEM-DEVERFQPLLDGLKSGT--SIALKVGCLQLINALITPAEELDFR 254
Query: 285 VHLQYEFSRLGLDSYLDKLRHTET 308
VH++ E RLGL L +LR E
Sbjct: 255 VHIRSELMRLGLHQVLQELREIEN 278
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 51/88 (57%), Gaps = 7/88 (7%)
Query: 339 EDMNFRVHLQYEFSRLGLDSY------LDKLRHTESEELQVACMQFINIVVHSVEDMNFR 392
EDMN RV L+ R +D LD L+ S L+V C+Q IN ++ E+++FR
Sbjct: 196 EDMNERV-LEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFR 254
Query: 393 VHLQYEFSRLGLDSYLDKLRHTESEELQ 420
VH++ E RLGL L +LR E+E+++
Sbjct: 255 VHIRSELMRLGLHQVLQELREIENEDMK 282
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 37/56 (66%)
Query: 323 VQVACMQFINIVVHSVEDMNFRVHLQYEFSRLGLDSYLDKLRHTESEELQVACMQF 378
++V C+Q IN ++ E+++FRVH++ E RLGL L +LR E+E+++V F
Sbjct: 233 LKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMKVQLCVF 288
>pdb|1Z2C|B Chain B, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|D Chain D, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 383
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 75/144 (52%), Gaps = 6/144 (4%)
Query: 168 HVCILCLRAIMNNKYGLNMVIKHTEAINSIALSLMHKSLRTKALVLELLAAICLVTGG-- 225
H I CL+A MNNK+G+ +++ E I + ++ +LL+A+C++
Sbjct: 138 HEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPED 197
Query: 226 -HEIILAAFDNFKEICQESKRFETLMDYFMNYEVFHIEFMVACMQFINIVVHSVEDMNFR 284
+E +L A E+ E +RF+ L+D + I V C+Q IN ++ E+++FR
Sbjct: 198 MNERVLEAMTERAEM-DEVERFQPLLDGLKSGT--SIALKVGCLQLINALITPAEELDFR 254
Query: 285 VHLQYEFSRLGLDSYLDKLRHTET 308
VH++ E RLGL L +LR E
Sbjct: 255 VHIRSELMRLGLHQVLQELREIEN 278
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 51/88 (57%), Gaps = 7/88 (7%)
Query: 339 EDMNFRVHLQYEFSRLGLDSY------LDKLRHTESEELQVACMQFINIVVHSVEDMNFR 392
EDMN RV L+ R +D LD L+ S L+V C+Q IN ++ E+++FR
Sbjct: 196 EDMNERV-LEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFR 254
Query: 393 VHLQYEFSRLGLDSYLDKLRHTESEELQ 420
VH++ E RLGL L +LR E+E+++
Sbjct: 255 VHIRSELMRLGLHQVLQELREIENEDMK 282
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 37/56 (66%)
Query: 323 VQVACMQFINIVVHSVEDMNFRVHLQYEFSRLGLDSYLDKLRHTESEELQVACMQF 378
++V C+Q IN ++ E+++FRVH++ E RLGL L +LR E+E+++V F
Sbjct: 233 LKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMKVQLCVF 288
>pdb|3O4X|A Chain A, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
pdb|3O4X|B Chain B, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
pdb|3O4X|C Chain C, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
pdb|3O4X|D Chain D, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
Length = 330
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 75/144 (52%), Gaps = 6/144 (4%)
Query: 168 HVCILCLRAIMNNKYGLNMVIKHTEAINSIALSLMHKSLRTKALVLELLAAICLVTGG-- 225
H I CL+A MNNK+G+ +++ E I + ++ +LL+A+C++
Sbjct: 78 HEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPED 137
Query: 226 -HEIILAAFDNFKEICQESKRFETLMDYFMNYEVFHIEFMVACMQFINIVVHSVEDMNFR 284
+E +L A E+ E +RF+ L+D + I V C+Q IN ++ E+++FR
Sbjct: 138 MNERVLEAMTERAEM-DEVERFQPLLDGLKSGT--SIALKVGCLQLINALITPAEELDFR 194
Query: 285 VHLQYEFSRLGLDSYLDKLRHTET 308
VH++ E RLGL L +LR E
Sbjct: 195 VHIRSELMRLGLHQVLQELREIEN 218
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 51/88 (57%), Gaps = 7/88 (7%)
Query: 339 EDMNFRVHLQYEFSRLGLDSY------LDKLRHTESEELQVACMQFINIVVHSVEDMNFR 392
EDMN RV L+ R +D LD L+ S L+V C+Q IN ++ E+++FR
Sbjct: 136 EDMNERV-LEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFR 194
Query: 393 VHLQYEFSRLGLDSYLDKLRHTESEELQ 420
VH++ E RLGL L +LR E+E+++
Sbjct: 195 VHIRSELMRLGLHQVLQELREIENEDMK 222
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 37/56 (66%)
Query: 323 VQVACMQFINIVVHSVEDMNFRVHLQYEFSRLGLDSYLDKLRHTESEELQVACMQF 378
++V C+Q IN ++ E+++FRVH++ E RLGL L +LR E+E+++V F
Sbjct: 173 LKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMKVQLCVF 228
>pdb|3OBV|A Chain A, Autoinhibited Formin Mdia1 Structure
pdb|3OBV|B Chain B, Autoinhibited Formin Mdia1 Structure
pdb|3OBV|C Chain C, Autoinhibited Formin Mdia1 Structure
pdb|3OBV|D Chain D, Autoinhibited Formin Mdia1 Structure
Length = 327
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 75/144 (52%), Gaps = 6/144 (4%)
Query: 168 HVCILCLRAIMNNKYGLNMVIKHTEAINSIALSLMHKSLRTKALVLELLAAICLVTGG-- 225
H I CL+A MNNK+G+ +++ E I + ++ +LL+A+C++
Sbjct: 76 HEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPED 135
Query: 226 -HEIILAAFDNFKEICQESKRFETLMDYFMNYEVFHIEFMVACMQFINIVVHSVEDMNFR 284
+E +L A E+ E +RF+ L+D + I V C+Q IN ++ E+++FR
Sbjct: 136 MNERVLEAMTERAEM-DEVERFQPLLDGLKSGT--SIALKVGCLQLINALITPAEELDFR 192
Query: 285 VHLQYEFSRLGLDSYLDKLRHTET 308
VH++ E RLGL L +LR E
Sbjct: 193 VHIRSELMRLGLHQVLQELREIEN 216
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 51/88 (57%), Gaps = 7/88 (7%)
Query: 339 EDMNFRVHLQYEFSRLGLDSY------LDKLRHTESEELQVACMQFINIVVHSVEDMNFR 392
EDMN RV L+ R +D LD L+ S L+V C+Q IN ++ E+++FR
Sbjct: 134 EDMNERV-LEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFR 192
Query: 393 VHLQYEFSRLGLDSYLDKLRHTESEELQ 420
VH++ E RLGL L +LR E+E+++
Sbjct: 193 VHIRSELMRLGLHQVLQELREIENEDMK 220
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 37/56 (66%)
Query: 323 VQVACMQFINIVVHSVEDMNFRVHLQYEFSRLGLDSYLDKLRHTESEELQVACMQF 378
++V C+Q IN ++ E+++FRVH++ E RLGL L +LR E+E+++V F
Sbjct: 171 LKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMKVQLCVF 226
>pdb|2F31|A Chain A, Crystal Structure Of The Autoinhibitory Switch In Formin
Mdia1; The DidDAD COMPLEX
Length = 233
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 75/144 (52%), Gaps = 6/144 (4%)
Query: 168 HVCILCLRAIMNNKYGLNMVIKHTEAINSIALSLMHKSLRTKALVLELLAAICLVTGGHE 227
H I CL+A MNNK+G+ +++ E I + ++ +LL+A+C++ +
Sbjct: 72 HEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPED 131
Query: 228 I---ILAAFDNFKEICQESKRFETLMDYFMNYEVFHIEFMVACMQFINIVVHSVEDMNFR 284
+ +L A E+ E +RF+ L+D + I V C+Q IN ++ E+++FR
Sbjct: 132 MNERVLEAMTERAEM-DEVERFQPLLDGLKSGT--SIALKVGCLQLINALITPAEELDFR 188
Query: 285 VHLQYEFSRLGLDSYLDKLRHTET 308
VH++ E RLGL L +LR E
Sbjct: 189 VHIRSELMRLGLHQVLQELREIEN 212
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 53/93 (56%), Gaps = 7/93 (7%)
Query: 334 VVHSVEDMNFRVHLQYEFSRLGLDSY------LDKLRHTESEELQVACMQFINIVVHSVE 387
++ EDMN RV L+ R +D LD L+ S L+V C+Q IN ++ E
Sbjct: 125 ILPQPEDMNERV-LEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAE 183
Query: 388 DMNFRVHLQYEFSRLGLDSYLDKLRHTESEELQ 420
+++FRVH++ E RLGL L +LR E+E+++
Sbjct: 184 ELDFRVHIRSELMRLGLHQVLQELREIENEDMK 216
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 37/56 (66%)
Query: 323 VQVACMQFINIVVHSVEDMNFRVHLQYEFSRLGLDSYLDKLRHTESEELQVACMQF 378
++V C+Q IN ++ E+++FRVH++ E RLGL L +LR E+E+++V F
Sbjct: 167 LKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMKVQLCVF 222
>pdb|2BAP|B Chain B, Crystal Structure Of The N-Terminal Mdia1 Armadillo Repeat
Region And Dimerisation Domain In Complex With The Mdia1
Autoregulatory Domain (Dad)
pdb|2BAP|A Chain A, Crystal Structure Of The N-Terminal Mdia1 Armadillo Repeat
Region And Dimerisation Domain In Complex With The Mdia1
Autoregulatory Domain (Dad)
Length = 317
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 75/144 (52%), Gaps = 6/144 (4%)
Query: 168 HVCILCLRAIMNNKYGLNMVIKHTEAINSIALSLMHKSLRTKALVLELLAAICLVTGGHE 227
H I CL+A MNNK+G+ +++ E I + ++ +LL+A+C++ +
Sbjct: 72 HEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPED 131
Query: 228 I---ILAAFDNFKEICQESKRFETLMDYFMNYEVFHIEFMVACMQFINIVVHSVEDMNFR 284
+ +L A E+ E +RF+ L+D + I V C+Q IN ++ E+++FR
Sbjct: 132 MNERVLEAMTERAEM-DEVERFQPLLDGLKSGT--SIALKVGCLQLINALITPAEELDFR 188
Query: 285 VHLQYEFSRLGLDSYLDKLRHTET 308
VH++ E RLGL L +LR E
Sbjct: 189 VHIRSELMRLGLHQVLQELREIEN 212
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 53/93 (56%), Gaps = 7/93 (7%)
Query: 334 VVHSVEDMNFRVHLQYEFSRLGLDSY------LDKLRHTESEELQVACMQFINIVVHSVE 387
++ EDMN RV L+ R +D LD L+ S L+V C+Q IN ++ E
Sbjct: 125 ILPQPEDMNERV-LEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAE 183
Query: 388 DMNFRVHLQYEFSRLGLDSYLDKLRHTESEELQ 420
+++FRVH++ E RLGL L +LR E+E+++
Sbjct: 184 ELDFRVHIRSELMRLGLHQVLQELREIENEDMK 216
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 37/56 (66%)
Query: 323 VQVACMQFINIVVHSVEDMNFRVHLQYEFSRLGLDSYLDKLRHTESEELQVACMQF 378
++V C+Q IN ++ E+++FRVH++ E RLGL L +LR E+E+++V F
Sbjct: 167 LKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMKVQLCVF 222
>pdb|1KZH|A Chain A, Structure Of A Pyrophosphate-dependent Phosphofructokinase
From The Lyme Disease Spirochete Borrelia Burgdorferi
pdb|1KZH|B Chain B, Structure Of A Pyrophosphate-dependent Phosphofructokinase
From The Lyme Disease Spirochete Borrelia Burgdorferi
pdb|2F48|A Chain A, Crystal Structure Of A Novel Fructose 1,6-Bisphosphate And
Alf3 Containing Pyrophosphate-Dependent
Phosphofructo-1-Kinase Complex From Borrelia Burgdorferi
pdb|2F48|B Chain B, Crystal Structure Of A Novel Fructose 1,6-Bisphosphate And
Alf3 Containing Pyrophosphate-Dependent
Phosphofructo-1-Kinase Complex From Borrelia Burgdorferi
Length = 555
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 9/74 (12%)
Query: 173 CLRAIMNNKYGLNMVIKHTEAINSIALSLMHKSLRTKALVLELLAAICLVTGGHEIILAA 232
L+ N YGL +I TE +S++ S KAL + ++ + GGH +I
Sbjct: 44 ALKEFFKNTYGL-PIISFTEGESSLSFS--------KALNIGIILSGGPAPGGHNVISGV 94
Query: 233 FDNFKEICQESKRF 246
FD K+ SK F
Sbjct: 95 FDAIKKFNPNSKLF 108
>pdb|3RJT|A Chain A, Crystal Structure Of Lipolytic Protein G-D-S-L Family From
Alicyclobacillus Acidocaldarius Subsp. Acidocaldarius
Dsm 446
pdb|3RJT|B Chain B, Crystal Structure Of Lipolytic Protein G-D-S-L Family From
Alicyclobacillus Acidocaldarius Subsp. Acidocaldarius
Dsm 446
Length = 216
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 402 LGLDSYLDKLRHTESEELQERVQAKDPPAHYLSKLRTYLDPKASRSSRVQISAYLDNVFD 461
+G+D Y D LRH + + RV+ LS YL+P S R + AY++ D
Sbjct: 110 VGIDEYRDTLRHLVATT-KPRVREX----FLLSPF--YLEPNRSDPXRKTVDAYIEAXRD 162
Query: 462 VAA 464
VAA
Sbjct: 163 VAA 165
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.136 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,164,408
Number of Sequences: 62578
Number of extensions: 485639
Number of successful extensions: 1170
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1139
Number of HSP's gapped (non-prelim): 27
length of query: 493
length of database: 14,973,337
effective HSP length: 103
effective length of query: 390
effective length of database: 8,527,803
effective search space: 3325843170
effective search space used: 3325843170
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (25.0 bits)