Query psy8949
Match_columns 493
No_of_seqs 293 out of 450
Neff 5.6
Searched_HMMs 46136
Date Fri Aug 16 23:43:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8949.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8949hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1924|consensus 100.0 9.3E-41 2E-45 359.2 21.3 294 47-489 159-490 (1102)
2 KOG1923|consensus 99.9 6.6E-27 1.4E-31 253.6 6.1 137 174-311 1-137 (830)
3 PF06367 Drf_FH3: Diaphanous F 99.9 3.1E-25 6.8E-30 211.2 14.2 176 224-470 1-178 (197)
4 PF06371 Drf_GBD: Diaphanous G 99.8 4.8E-20 1E-24 172.8 8.1 111 42-221 77-187 (187)
5 KOG1924|consensus 99.6 2.8E-15 6.2E-20 163.4 10.2 112 352-473 285-398 (1102)
6 PF06367 Drf_FH3: Diaphanous F 99.4 3.8E-13 8.3E-18 128.2 7.9 76 352-427 19-96 (197)
7 KOG1923|consensus 97.5 3.6E-05 7.9E-10 85.8 2.0 104 355-488 72-177 (830)
8 PF11841 DUF3361: Domain of un 80.5 25 0.00055 33.3 11.2 107 168-291 35-145 (160)
9 PF10508 Proteasom_PSMB: Prote 75.9 14 0.0003 40.9 9.3 61 169-229 96-156 (503)
10 PF10508 Proteasom_PSMB: Prote 74.7 98 0.0021 34.2 15.6 100 164-279 52-151 (503)
11 cd00256 VATPase_H VATPase_H, r 71.3 1.3E+02 0.0027 33.1 15.0 129 162-305 156-287 (429)
12 KOG0212|consensus 62.7 1.9E+02 0.004 33.0 14.2 118 168-291 354-492 (675)
13 PF05804 KAP: Kinesin-associat 57.6 3.7E+02 0.008 31.5 16.6 213 164-383 384-636 (708)
14 cd00020 ARM Armadillo/beta-cat 54.8 33 0.00071 28.4 5.6 53 168-220 67-119 (120)
15 PF06371 Drf_GBD: Diaphanous G 53.2 4.5 9.7E-05 37.7 0.0 23 5-29 97-119 (187)
16 KOG2759|consensus 53.0 3.5E+02 0.0075 29.8 14.3 129 162-305 169-300 (442)
17 PF03224 V-ATPase_H_N: V-ATPas 51.0 2.2E+02 0.0047 29.2 11.9 123 168-305 168-293 (312)
18 cd00020 ARM Armadillo/beta-cat 50.8 1.4E+02 0.003 24.5 9.4 56 167-223 24-80 (120)
19 KOG1062|consensus 50.5 91 0.002 36.6 9.6 80 195-295 353-435 (866)
20 PF14664 RICTOR_N: Rapamycin-i 50.0 34 0.00074 36.5 6.0 64 168-233 86-156 (371)
21 PF05536 Neurochondrin: Neuroc 42.3 70 0.0015 35.9 7.2 55 167-223 116-170 (543)
22 PF02985 HEAT: HEAT repeat; I 33.5 77 0.0017 21.1 3.7 28 194-221 2-29 (31)
23 PF05804 KAP: Kinesin-associat 29.5 4.2E+02 0.0091 31.0 10.9 114 168-303 264-380 (708)
24 smart00544 MA3 Domain in DAP-5 29.3 1.3E+02 0.0029 25.6 5.4 50 165-221 16-65 (113)
25 PF02847 MA3: MA3 domain; Int 29.2 1.8E+02 0.0038 24.7 6.2 65 166-237 17-89 (113)
26 PF10274 ParcG: Parkin co-regu 28.6 2.2E+02 0.0048 27.7 7.2 50 191-240 79-136 (183)
27 PF12765 Cohesin_HEAT: HEAT re 26.2 70 0.0015 23.3 2.7 31 186-216 12-42 (42)
28 PF12830 Nipped-B_C: Sister ch 25.7 5.8E+02 0.013 24.2 10.4 77 159-241 17-100 (187)
29 PHA02994 hypothetical protein; 25.6 55 0.0012 32.5 2.6 82 2-83 75-161 (218)
30 PF12719 Cnd3: Nuclear condens 23.8 5E+02 0.011 26.4 9.3 90 163-252 74-178 (298)
31 KOG4199|consensus 23.4 6.5E+02 0.014 27.3 10.0 111 168-305 305-426 (461)
32 PF04031 Las1: Las1-like ; In 22.9 1E+02 0.0022 28.9 3.8 46 261-306 78-123 (154)
33 COG4828 Predicted membrane pro 22.0 3.7E+02 0.008 24.0 6.7 98 209-321 14-111 (113)
34 PF08389 Xpo1: Exportin 1-like 21.6 2.3E+02 0.0049 24.7 5.6 49 164-216 100-148 (148)
35 KOG4500|consensus 20.4 4.9E+02 0.011 29.1 8.5 31 193-223 88-118 (604)
36 PF11707 Npa1: Ribosome 60S bi 20.2 2.2E+02 0.0047 29.7 5.9 113 169-305 45-169 (330)
No 1
>KOG1924|consensus
Probab=100.00 E-value=9.3e-41 Score=359.20 Aligned_cols=294 Identities=31% Similarity=0.471 Sum_probs=253.8
Q ss_pred hhhhccccccccCCChhHHHHHhcccccchHHHHHHHHHHHHHHhhhhhhcccCCCccccccCCCcccCCCCCCCCCCCC
Q psy8949 47 EETLNTSSEKCDKPPYRWVKEFLNDDNHGLDSLIEYLSFRLVMMRHEYRIADSKHLSEETLNTSSETENGLPASTNPPAN 126 (493)
Q Consensus 47 t~~L~~LeisLRTn~i~WV~eFln~~n~Gl~~L~eyL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (493)
-+.|.+|.|||-.|+|+||++|--+ |++.+.+.|..+... + +
T Consensus 159 ~~CleslRVsL~~npVSwvn~Fgve---gl~ll~~~Lkrl~ds----------k--------------~----------- 200 (1102)
T KOG1924|consen 159 LECLESLRVSLTSNPVSWVNKFGVE---GLGLLLDVLKRLRDS----------K--------------V----------- 200 (1102)
T ss_pred HHHHHHHhhhhcCCccHHHHHhhhh---hHHHHHHHHHHHHhh----------h--------------h-----------
Confidence 4567899999999999999999986 999999999876521 0 0
Q ss_pred CCCCCCCCCCCCccccccChhhhhhhhhhhhccCCCCCcchHHHHHHHHHHhcchhhHHHHhcchhhHHHHHHhhcCCCh
Q psy8949 127 VISPQSLGHQRPSLDLASSPSVKKRSRHAARLNMGDPKDDIHVCILCLRAIMNNKYGLNMVIKHTEAINSIALSLMHKSL 206 (493)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~~~~r~~~~~~~~~m~~~~dd~~~cI~CLkAIMN~~~Gl~~vl~~~~~i~~Ia~sL~s~~~ 206 (493)
+. .+ ..+..+++|+||||+|||++|+..|+.....+..+|.+++...+
T Consensus 201 -------~~---~~----------------------~~k~~~eiIrClka~mNn~~Gl~~vL~~e~~lllla~aldpr~p 248 (1102)
T KOG1924|consen 201 -------GS---KL----------------------DIKNLQEIIRCLKAFMNNKFGLVLVLRRERSLLLLARALDPREP 248 (1102)
T ss_pred -------hh---hh----------------------HHHHHHHHHHHHHHHhccccceeeeecCCccHHHHHHhcCccCc
Confidence 00 00 12446999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhccc--CchHHHHHHHHhhHhhccCCcchHHHHhHhhccccccHHHHHHHHHHhhHHhcCCCChhhH
Q psy8949 207 RTKALVLELLAAICLVT--GGHEIILAAFDNFKEICQESKRFETLMDYFMNYEVFHIEFMVACMQFINIVVHSVEDMNFR 284 (493)
Q Consensus 207 ~tr~lVlELLaalCl~~--~Gh~~VL~A~d~~k~~~~E~~RF~~Lv~~l~~~e~~~~ey~~a~m~fIN~lV~s~eDl~~R 284 (493)
.+++.|+.+|+++|++. +|.++||+|++...+. ....||+++|+.+...+ .....++||+|||+++.++.|++||
T Consensus 249 nmm~dvvkllsalciV~ee~~~ekvl~aiT~~ae~-~~veRF~piv~gl~~~e--~~~l~vacmq~INal~t~p~dldfR 325 (1102)
T KOG1924|consen 249 NMMTDVVKLLSALCIVGEENGLEKVLEAITTIAEA-KPVERFRPIVEGLDFLE--KQQLQVACMQFINALVTSPSDLDFR 325 (1102)
T ss_pred cHHHHHHHHHHHHheeehhhHHHHHHHHHHHHHhh-cchhhhhhHHHHHhccc--hHHHHHHHHHHHHHhcCCHHHhhHH
Confidence 99999999999999997 6999999999999885 77899999999998764 6778999999999999999999999
Q ss_pred HHHHHHHHHCCChHHHHhhhhhhhhhhhhHHHhhhhhhhHH----HHHHHHHhhhhccccchhhhhhHHHHHhhchHHHH
Q psy8949 285 VHLQYEFSRLGLDSYLDKLRHTETLLLHCYLLCLYFYRVQV----ACMQFINIVVHSVEDMNFRVHLQYEFSRLGLDSYL 360 (493)
Q Consensus 285 VhLR~Ef~~lGL~~iL~kLr~~e~~~lq~qi~~~~~~e~~~----~~~~~~~al~~~~~d~d~r~~~r~~~~~~~~~~~v 360 (493)
+|||+||+++||..+|++++.+++..++.|+.+ |+|+++ +++|.++++...++|+|..++.
T Consensus 326 lhlR~E~mr~gL~~~l~~l~~i~n~~ldvqlkv--fdE~~e~Dl~el~~rledir~emDd~~~~f~l------------- 390 (1102)
T KOG1924|consen 326 LHLRSEFMRDGLHKYLPDLTEINNDILDVQLKV--FDEHKEDDLEELSGRLEDIRAEMDDANEVFEL------------- 390 (1102)
T ss_pred HHHHHHHHHHhHHHHHHHhhhhccHHHHHHHHH--HhhhhhhhHHHHHhHHHhhhhhhccHHHHHHH-------------
Confidence 999999999999999999999998888888877 566653 8999999998888777755543
Q ss_pred hhhhcccchhHHHHHHHhhhhhccCccccchhhhhHHHHhhcCchHHHhhhccCCcHHHHHhhhccCCCcchhhhhhhhc
Q psy8949 361 DKLRHTESEELQVACMQFINIVVHSVEDMNFRVHLQYEFSRLGLDSYLDKLRHTESEELQERVQAKDPPAHYLSKLRTYL 440 (493)
Q Consensus 361 ~~L~~~~n~~~~v~~m~fiN~li~~~~dl~~R~hLr~Ef~~lgl~~~l~~lr~~e~~~L~~ql~~fd~~~~~lSiLqhll 440 (493)
|.+.+++.-+++||||||||||
T Consensus 391 ----------------------------------------------------------L~n~vkdT~aE~yfLSILQhll 412 (1102)
T KOG1924|consen 391 ----------------------------------------------------------LANTVKDTGAEPYFLSILQHLL 412 (1102)
T ss_pred ----------------------------------------------------------HHHhhhhccccchHHHHHHHHH
Confidence 3345556667899999999998
Q ss_pred ------------------------------CCCCCCCch--hHHHHHHHhhHhHHHhhccchhHHHHHHHHHHHhHhhcC
Q psy8949 441 ------------------------------DPKASRSSR--VQISAYLDNVFDVAALMEDSETKTAALEKVAELEDELGH 488 (493)
Q Consensus 441 ------------------------------~~~~~~~~~--~~~w~~ld~~v~~a~lle~~e~~~~~l~~~~~~~~~~~~ 488 (493)
|+++++..+ ..+..++|.+||+|+ ++++|+|+++++|+ +++++++
T Consensus 413 lirnDy~~rpqYykLIEecISqIvlHr~~~DPdf~yr~~l~id~~~liD~~vdkak-~eeseqkA~e~~kk--~~ke~ta 489 (1102)
T KOG1924|consen 413 LIRNDYYIRPQYYKLIEECISQIVLHRTGMDPDFKYRFRLDIDLTELIDKMVDKAK-AEESEQKAAELEKK--FDKELTA 489 (1102)
T ss_pred HHhhhhhhhHHHHHHHHHHHHHHHHhcCCCCCCcchhhcccCcHHHHHHHHHHHHH-HHHHHHHHHHHHHH--HHHHHhH
Confidence 888887764 488899999999999 99999999999999 9998886
Q ss_pred C
Q psy8949 489 R 489 (493)
Q Consensus 489 ~ 489 (493)
+
T Consensus 490 ~ 490 (1102)
T KOG1924|consen 490 R 490 (1102)
T ss_pred H
Confidence 4
No 2
>KOG1923|consensus
Probab=99.93 E-value=6.6e-27 Score=253.60 Aligned_cols=137 Identities=45% Similarity=0.581 Sum_probs=130.0
Q ss_pred HHHHhcchhhHHHHhcchhhHHHHHHhhcCCChhHHHHHHHHHHHHhcccCchHHHHHHHHhhHhhccCCcchHHHHhHh
Q psy8949 174 LRAIMNNKYGLNMVIKHTEAINSIALSLMHKSLRTKALVLELLAAICLVTGGHEIILAAFDNFKEICQESKRFETLMDYF 253 (493)
Q Consensus 174 LkAIMN~~~Gl~~vl~~~~~i~~Ia~sL~s~~~~tr~lVlELLaalCl~~~Gh~~VL~A~d~~k~~~~E~~RF~~Lv~~l 253 (493)
|+++||+++|+..++.||.++++||.|+.+.+++|+++|+++|+++|++-|||++++.|++.|+.+++|+.||++++..+
T Consensus 1 laas~~~~~g~~~v~s~p~A~~~ia~S~~~~n~rtktsvl~~lasic~v~gg~E~~~~a~~~f~~v~qe~~rf~~lm~~~ 80 (830)
T KOG1923|consen 1 LAASMNNKAGFGQVGSVPPAIACIANSSKHTNLRTKTSVLGSLASICYVIGGSEQSWPAAPVFSKVNQEPRRFNTLMYVH 80 (830)
T ss_pred CCcccccccccCCCCCCchHHHHhhHhhccCCcchHHHHHHHHHHHHHHhcCceeecccCcchhhhhcCccccccccccc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccccHHHHHHHHHHhhHHhcCCCChhhHHHHHHHHHHCCChHHHHhhhhhhhhhh
Q psy8949 254 MNYEVFHIEFMVACMQFINIVVHSVEDMNFRVHLQYEFSRLGLDSYLDKLRHTETLLL 311 (493)
Q Consensus 254 ~~~e~~~~ey~~a~m~fIN~lV~s~eDl~~RVhLR~Ef~~lGL~~iL~kLr~~e~~~l 311 (493)
...+.+++||++++|||+|.+|+ ++|+++|+|+||||+.+||+.+++.++.+++..+
T Consensus 81 s~~~~fn~df~~a~lQf~~ifv~-v~d~n~rvhlQye~t~lgld~yi~~~~e~ese~l 137 (830)
T KOG1923|consen 81 SLPPFFNADFSAAKLQFYDVFVG-VPDENFRVHLQYEATHLGLDKYIDAPPENESEEL 137 (830)
T ss_pred cCccccChHHHHHHHHHHHHHhc-chhhhhHHHhhhHHHHHhhhhhhhcchhhhhHHH
Confidence 98888999999999999999999 9999999999999999999988888887766333
No 3
>PF06367 Drf_FH3: Diaphanous FH3 Domain; InterPro: IPR010472 Formin homology (FH) proteins play a crucial role in the reorganisation of the actin cytoskeleton, which mediates various functions of the cell cortex including motility, adhesion, and cytokinesis []. Formins are multidomain proteins that interact with diverse signalling molecules and cytoskeletal proteins, although some formins have been assigned functions within the nucleus. Formins are characterised by the presence of three FH domains (FH1, FH2 and FH3), although members of the formin family do not necessarily contain all three domains []. The proline-rich FH1 domain mediates interactions with a variety of proteins, including the actin-binding protein profilin, SH3 (Src homology 3) domain proteins, and WW domain proteins. The FH2 domain (IPR003104 from INTERPRO) is required to inhibit actin polymerisation. The FH3 domain is less well conserved and is required for directing formins to the correct intracellular location, such the mitotic spindle [], or the projection tip during conjugation []. In addition, some formins can contain a GTPase-binding domain (GBD) (IPR010473 from INTERPRO) required for binding to Rho small GTPases, and a C-terminal conserved Dia-autoregulatory domain (DAD). This entry represents the FH3 domain.; GO: 0003779 actin binding, 0016043 cellular component organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=99.93 E-value=3.1e-25 Score=211.21 Aligned_cols=176 Identities=31% Similarity=0.460 Sum_probs=132.8
Q ss_pred CchHHHHHHHHhhHhhccCCcchHHHHhHhhccccccHHHHHHHHHHhhHHhcCCCChhhHHHHHHHHHHCCChHHHHhh
Q psy8949 224 GGHEIILAAFDNFKEICQESKRFETLMDYFMNYEVFHIEFMVACMQFINIVVHSVEDMNFRVHLQYEFSRLGLDSYLDKL 303 (493)
Q Consensus 224 ~Gh~~VL~A~d~~k~~~~E~~RF~~Lv~~l~~~e~~~~ey~~a~m~fIN~lV~s~eDl~~RVhLR~Ef~~lGL~~iL~kL 303 (493)
|||++|++||++|+..++|++||++||+++...+...++|+++||+|||+||++++|+++|+|||+||+.+||.+++++|
T Consensus 1 ~G~~~vl~a~~~~~~~~~e~~RF~~lv~~l~~~~~~~~e~~~~~l~~IN~li~~~~d~~~R~~lr~e~~~~GL~~il~~l 80 (197)
T PF06367_consen 1 GGHEKVLEAFDNFKEVKGERGRFQSLVGALESVDSSDIEYKTACLQFINSLINSPEDLNFRVHLRNEFERLGLLDILEKL 80 (197)
T ss_dssp -HHHHHHHHHHHHHHHHT-S-TTHHHHHHCS--TTS-HHHHHHHHHHHHHHHTT-SSHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhCCcccHHHHHHHHHccccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCcHHHHHHH
Confidence 69999999999999999999999999999996456899999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhHHHhhhhhhh-HH-HHHHHHHhhhhccccchhhhhhHHHHHhhchHHHHhhhhcccchhHHHHHHHhhhh
Q psy8949 304 RHTETLLLHCYLLCLYFYRV-QV-ACMQFINIVVHSVEDMNFRVHLQYEFSRLGLDSYLDKLRHTESEELQVACMQFINI 381 (493)
Q Consensus 304 r~~e~~~lq~qi~~~~~~e~-~~-~~~~~~~al~~~~~d~d~r~~~r~~~~~~~~~~~v~~L~~~~n~~~~v~~m~fiN~ 381 (493)
+..++..++.|++.|+-.+. ++ ++.+..+ .. +.
T Consensus 81 ~~~~~~~L~~Qi~~f~~~~~~D~~el~~~~~------------------~~---------------------------~~ 115 (197)
T PF06367_consen 81 RNLEDDDLQEQIDIFEENEEEDEEELLERFD------------------SK---------------------------TV 115 (197)
T ss_dssp TTS--HHHHHHHHHHHHHHHHHHHHHHHHHH------------------HH---------------------------HH
T ss_pred HhcchHHHHHHHHHHHHHHHhhHHHHHHhhc------------------cc---------------------------cc
Confidence 99999999999999876654 22 2211100 00 00
Q ss_pred hccCccccchhhhhHHHHhhcCchHHHhhhccCCcHHHHHhhhccCCCcchhhhhhhhcCCCCCCCchhHHHHHHHhhHh
Q psy8949 382 VVHSVEDMNFRVHLQYEFSRLGLDSYLDKLRHTESEELQERVQAKDPPAHYLSKLRTYLDPKASRSSRVQISAYLDNVFD 461 (493)
Q Consensus 382 li~~~~dl~~R~hLr~Ef~~lgl~~~l~~lr~~e~~~L~~ql~~fd~~~~~lSiLqhll~~~~~~~~~~~~w~~ld~~v~ 461 (493)
-+..|.++ ...|...++..+++.+|+|+|||+|.++.......++|.++|.+|.
T Consensus 116 ~~~~~~~l--------------------------~~~l~~~~~~~~~~~~~~siLq~ll~i~~~~~~~~~~~~lie~~v~ 169 (197)
T PF06367_consen 116 DLSDPQEL--------------------------FEALLEKLKDTEAEDYFLSILQHLLLIRQDEEERSKYWQLIESLVS 169 (197)
T ss_dssp HSSSHHHH--------------------------HHHHHHHHTTSTTHHHHHHHHHHHTTS-TTTTTHHHHHHHHHHHHH
T ss_pred ccccHHHH--------------------------HHHHHHHHhCcccHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH
Confidence 01112211 3344566677778889999999999985555556899999999999
Q ss_pred HHHhhccch
Q psy8949 462 VAALMEDSE 470 (493)
Q Consensus 462 ~a~lle~~e 470 (493)
+..+.....
T Consensus 170 ~i~~~~~~~ 178 (197)
T PF06367_consen 170 QIVLDRKGI 178 (197)
T ss_dssp HHHSSGGGS
T ss_pred HHHHhcccc
Confidence 999766543
No 4
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=99.81 E-value=4.8e-20 Score=172.83 Aligned_cols=111 Identities=38% Similarity=0.626 Sum_probs=90.7
Q ss_pred cccchhhhhccccccccCCChhHHHHHhcccccchHHHHHHHHHHHHHHhhhhhhcccCCCccccccCCCcccCCCCCCC
Q psy8949 42 SKHLSEETLNTSSEKCDKPPYRWVKEFLNDDNHGLDSLIEYLSFRLVMMRHEYRIADSKHLSEETLNTSSETENGLPAST 121 (493)
Q Consensus 42 s~~~st~~L~~LeisLRTn~i~WV~eFln~~n~Gl~~L~eyL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (493)
+...+.+.|++|+++|||++++||++|++ .+|+++|+++|......- . .
T Consensus 77 ~~~~~~~~L~~L~v~Lrt~~~~Wv~~Fl~--~~G~~~L~~~L~~~~~~~------~-----------------------~ 125 (187)
T PF06371_consen 77 SRPSTSKILKSLRVSLRTNPISWVQEFLE--LGGLEALLNVLSKLNKKK------E-----------------------K 125 (187)
T ss_dssp TT--HHHHHHHHHHHHHHS-HHHHHHH-H--HHHHHHHHHHHHHHHTHH------C-----------------------T
T ss_pred ccCccHHHHHHHHHHhccCCchHHHHhcc--CCCHHHHHHHHHHhhhhh------h-----------------------h
Confidence 33445599999999999999999999998 599999999998765210 0 0
Q ss_pred CCCCCCCCCCCCCCCCCccccccChhhhhhhhhhhhccCCCCCcchHHHHHHHHHHhcchhhHHHHhcchhhHHHHHHhh
Q psy8949 122 NPPANVISPQSLGHQRPSLDLASSPSVKKRSRHAARLNMGDPKDDIHVCILCLRAIMNNKYGLNMVIKHTEAINSIALSL 201 (493)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~r~~~~~~~~~m~~~~dd~~~cI~CLkAIMN~~~Gl~~vl~~~~~i~~Ia~sL 201 (493)
. ....+.+++|++|||||||+++|++.++.+|.++..|+.||
T Consensus 126 -------------~-------------------------~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L 167 (187)
T PF06371_consen 126 -------------S-------------------------EEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSL 167 (187)
T ss_dssp -------------C-------------------------TTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT-
T ss_pred -------------c-------------------------chhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHH
Confidence 0 12336689999999999999999999999999999999999
Q ss_pred cCCChhHHHHHHHHHHHHhc
Q psy8949 202 MHKSLRTKALVLELLAAICL 221 (493)
Q Consensus 202 ~s~~~~tr~lVlELLaalCl 221 (493)
+|++++||++|+|+|+++|+
T Consensus 168 ~s~~~~~r~~~leiL~~lc~ 187 (187)
T PF06371_consen 168 DSPNIKTRKLALEILAALCL 187 (187)
T ss_dssp -TTSHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHC
Confidence 99999999999999999996
No 5
>KOG1924|consensus
Probab=99.59 E-value=2.8e-15 Score=163.45 Aligned_cols=112 Identities=31% Similarity=0.463 Sum_probs=93.1
Q ss_pred HhhchHHHHhhhhcccchhHHHHHHHhhhhhccCccccchhhhhHHHHhhcCchHHHhhhccCCcHHHHHhhhccCC--C
Q psy8949 352 SRLGLDSYLDKLRHTESEELQVACMQFINIVVHSVEDMNFRVHLQYEFSRLGLDSYLDKLRHTESEELQERVQAKDP--P 429 (493)
Q Consensus 352 ~~~~~~~~v~~L~~~~n~~~~v~~m~fiN~li~~~~dl~~R~hLr~Ef~~lgl~~~l~~lr~~e~~~L~~ql~~fd~--~ 429 (493)
.+-||++||++|++.+.+.++|+||||||+|+.+|+|++||+|||+||+++||.++|++++..+++.|++|+++||. +
T Consensus 285 ~veRF~piv~gl~~~e~~~l~vacmq~INal~t~p~dldfRlhlR~E~mr~gL~~~l~~l~~i~n~~ldvqlkvfdE~~e 364 (1102)
T KOG1924|consen 285 PVERFRPIVEGLDFLEKQQLQVACMQFINALVTSPSDLDFRLHLRSEFMRDGLHKYLPDLTEINNDILDVQLKVFDEHKE 364 (1102)
T ss_pred chhhhhhHHHHHhccchHHHHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHhHHHHHHHhhhhccHHHHHHHHHHhhhhh
Confidence 34579999999999999999999999999999999999999999999999999999999999999999999999996 4
Q ss_pred cchhhhhhhhcCCCCCCCchhHHHHHHHhhHhHHHhhccchhHH
Q psy8949 430 AHYLSKLRTYLDPKASRSSRVQISAYLDNVFDVAALMEDSETKT 473 (493)
Q Consensus 430 ~~~lSiLqhll~~~~~~~~~~~~w~~ld~~v~~a~lle~~e~~~ 473 (493)
..+....+.| ..|.+-.|.+-++..+|......+
T Consensus 365 ~Dl~el~~rl----------edir~emDd~~~~f~lL~n~vkdT 398 (1102)
T KOG1924|consen 365 DDLEELSGRL----------EDIRAEMDDANEVFELLANTVKDT 398 (1102)
T ss_pred hhHHHHHhHH----------HhhhhhhccHHHHHHHHHHhhhhc
Confidence 5555555555 455555666666665555544433
No 6
>PF06367 Drf_FH3: Diaphanous FH3 Domain; InterPro: IPR010472 Formin homology (FH) proteins play a crucial role in the reorganisation of the actin cytoskeleton, which mediates various functions of the cell cortex including motility, adhesion, and cytokinesis []. Formins are multidomain proteins that interact with diverse signalling molecules and cytoskeletal proteins, although some formins have been assigned functions within the nucleus. Formins are characterised by the presence of three FH domains (FH1, FH2 and FH3), although members of the formin family do not necessarily contain all three domains []. The proline-rich FH1 domain mediates interactions with a variety of proteins, including the actin-binding protein profilin, SH3 (Src homology 3) domain proteins, and WW domain proteins. The FH2 domain (IPR003104 from INTERPRO) is required to inhibit actin polymerisation. The FH3 domain is less well conserved and is required for directing formins to the correct intracellular location, such the mitotic spindle [], or the projection tip during conjugation []. In addition, some formins can contain a GTPase-binding domain (GBD) (IPR010473 from INTERPRO) required for binding to Rho small GTPases, and a C-terminal conserved Dia-autoregulatory domain (DAD). This entry represents the FH3 domain.; GO: 0003779 actin binding, 0016043 cellular component organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=99.41 E-value=3.8e-13 Score=128.22 Aligned_cols=76 Identities=43% Similarity=0.714 Sum_probs=67.2
Q ss_pred HhhchHHHHhhhh--cccchhHHHHHHHhhhhhccCccccchhhhhHHHHhhcCchHHHhhhccCCcHHHHHhhhccC
Q psy8949 352 SRLGLDSYLDKLR--HTESEELQVACMQFINIVVHSVEDMNFRVHLQYEFSRLGLDSYLDKLRHTESEELQERVQAKD 427 (493)
Q Consensus 352 ~~~~~~~~v~~L~--~~~n~~~~v~~m~fiN~li~~~~dl~~R~hLr~Ef~~lgl~~~l~~lr~~e~~~L~~ql~~fd 427 (493)
.+.||+++|..++ .....+|+++||+|||++|++++|+++|+|||+||..+||.++++++|..+++.|..|++.|.
T Consensus 19 e~~RF~~lv~~l~~~~~~~~e~~~~~l~~IN~li~~~~d~~~R~~lr~e~~~~GL~~il~~l~~~~~~~L~~Qi~~f~ 96 (197)
T PF06367_consen 19 ERGRFQSLVGALESVDSSDIEYKTACLQFINSLINSPEDLNFRVHLRNEFERLGLLDILEKLRNLEDDDLQEQIDIFE 96 (197)
T ss_dssp -S-TTHHHHHHCS--TTS-HHHHHHHHHHHHHHHTT-SSHHHHHHHHHHHHHTTHHHHHHHHTTS--HHHHHHHHHHH
T ss_pred CcccHHHHHHHHHccccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCcHHHHHHHHhcchHHHHHHHHHHH
Confidence 4678999999997 578889999999999999999999999999999999999999999999999999999999886
No 7
>KOG1923|consensus
Probab=97.53 E-value=3.6e-05 Score=85.78 Aligned_cols=104 Identities=42% Similarity=0.577 Sum_probs=95.5
Q ss_pred chHHHHhhhhc--ccchhHHHHHHHhhhhhccCccccchhhhhHHHHhhcCchHHHhhhccCCcHHHHHhhhccCCCcch
Q psy8949 355 GLDSYLDKLRH--TESEELQVACMQFINIVVHSVEDMNFRVHLQYEFSRLGLDSYLDKLRHTESEELQERVQAKDPPAHY 432 (493)
Q Consensus 355 ~~~~~v~~L~~--~~n~~~~v~~m~fiN~li~~~~dl~~R~hLr~Ef~~lgl~~~l~~lr~~e~~~L~~ql~~fd~~~~~ 432 (493)
||++++.-..+ .-|++++++||||+|.+++ .+|++||+|++|||+.+||+.+++..++.+.+.|+
T Consensus 72 rf~~lm~~~s~~~~fn~df~~a~lQf~~ifv~-v~d~n~rvhlQye~t~lgld~yi~~~~e~ese~l~------------ 138 (830)
T KOG1923|consen 72 RFNTLMYVHSLPPFFNADFSAAKLQFYDVFVG-VPDENFRVHLQYEATHLGLDKYIDAPPENESEELQ------------ 138 (830)
T ss_pred ccccccccccCccccChHHHHHHHHHHHHHhc-chhhhhHHHhhhHHHHHhhhhhhhcchhhhhHHHH------------
Confidence 57777776543 5799999999999999999 99999999999999999999999999999999988
Q ss_pred hhhhhhhcCCCCCCCchhHHHHHHHhhHhHHHhhccchhHHHHHHHHHHHhHhhcC
Q psy8949 433 LSKLRTYLDPKASRSSRVQISAYLDNVFDVAALMEDSETKTAALEKVAELEDELGH 488 (493)
Q Consensus 433 lSiLqhll~~~~~~~~~~~~w~~ld~~v~~a~lle~~e~~~~~l~~~~~~~~~~~~ 488 (493)
.|+-.|+|++.|+..+++++++|+.++++++++++.++|
T Consensus 139 -----------------~Q~~sy~dn~~dv~all~ds~~k~~~le~v~~~~~~ish 177 (830)
T KOG1923|consen 139 -----------------RQFQSYTDNLTDVRALLRDSFQKTFVLEFVETPADQISH 177 (830)
T ss_pred -----------------HHHHHHhhhHHHHHHhcccchhhhHHHHhhcchhhhhhH
Confidence 567799999999999999999999999999999998876
No 8
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=80.54 E-value=25 Score=33.35 Aligned_cols=107 Identities=14% Similarity=0.174 Sum_probs=73.3
Q ss_pred HHHHHHHHHHhcchh-hHHHHhcchhhHHHHHHhhcCCC--hhHHHHHHHHHHHHhccc-CchHHHHHHHHhhHhhccCC
Q psy8949 168 HVCILCLRAIMNNKY-GLNMVIKHTEAINSIALSLMHKS--LRTKALVLELLAAICLVT-GGHEIILAAFDNFKEICQES 243 (493)
Q Consensus 168 ~~cI~CLkAIMN~~~-Gl~~vl~~~~~i~~Ia~sL~s~~--~~tr~lVlELLaalCl~~-~Gh~~VL~A~d~~k~~~~E~ 243 (493)
..++.|+--+|.... |= .. -.+..|..||.-.+++. +.+-..++.+|=.++.-+ .+|..| .+.
T Consensus 35 a~~L~af~eLMeHg~vsW-d~-l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~Vl~S~~ly~~V-----------~~e 101 (160)
T PF11841_consen 35 AYALTAFVELMEHGIVSW-DT-LSDSFIKKIASYVNSSAMDASILQRSLAILESIVLNSPKLYQLV-----------EQE 101 (160)
T ss_pred HHHHHHHHHHHhcCcCch-hh-ccHHHHHHHHHHHccccccchHHHHHHHHHHHHHhCCHHHHHHH-----------hcc
Confidence 457889999998643 33 23 34557888888888554 556666777776655543 335444 235
Q ss_pred cchHHHHhHhhccccccHHHHHHHHHHhhHHhcCCCChhhHHHHHHHH
Q psy8949 244 KRFETLMDYFMNYEVFHIEFMVACMQFINIVVHSVEDMNFRVHLQYEF 291 (493)
Q Consensus 244 ~RF~~Lv~~l~~~e~~~~ey~~a~m~fIN~lV~s~eDl~~RVhLR~Ef 291 (493)
..++.++.-+.. .+-+.++.+|.+||++.-.++|-+ |-.+..-|
T Consensus 102 vt~~~Li~hLq~---~~~~iq~naiaLinAL~~kA~~~~-r~~i~~~l 145 (160)
T PF11841_consen 102 VTLESLIRHLQV---SNQEIQTNAIALINALFLKADDSK-RKEIAETL 145 (160)
T ss_pred CCHHHHHHHHHc---CCHHHHHHHHHHHHHHHhcCChHH-HHHHHHHH
Confidence 678889999986 366789999999999999987744 33444433
No 9
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=75.90 E-value=14 Score=40.85 Aligned_cols=61 Identities=16% Similarity=0.194 Sum_probs=51.3
Q ss_pred HHHHHHHHHhcchhhHHHHhcchhhHHHHHHhhcCCChhHHHHHHHHHHHHhcccCchHHH
Q psy8949 169 VCILCLRAIMNNKYGLNMVIKHTEAINSIALSLMHKSLRTKALVLELLAAICLVTGGHEII 229 (493)
Q Consensus 169 ~cI~CLkAIMN~~~Gl~~vl~~~~~i~~Ia~sL~s~~~~tr~lVlELLaalCl~~~Gh~~V 229 (493)
.+++.|+.+.+...|.-.++.+++.+..|..+|..++..+.+.+..+|..++-.+.|.+.+
T Consensus 96 l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l 156 (503)
T PF10508_consen 96 LALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQL 156 (503)
T ss_pred HHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHH
Confidence 3455566666677788888888899999999999999999999999999999887777766
No 10
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=74.74 E-value=98 Score=34.22 Aligned_cols=100 Identities=11% Similarity=0.141 Sum_probs=67.7
Q ss_pred CcchHHHHHHHHHHhcchhhHHHHhcchhhHHHHHHhhcCCChhHHHHHHHHHHHHhcccCchHHHHHHHHhhHhhccCC
Q psy8949 164 KDDIHVCILCLRAIMNNKYGLNMVIKHTEAINSIALSLMHKSLRTKALVLELLAAICLVTGGHEIILAAFDNFKEICQES 243 (493)
Q Consensus 164 ~dd~~~cI~CLkAIMN~~~Gl~~vl~~~~~i~~Ia~sL~s~~~~tr~lVlELLaalCl~~~Gh~~VL~A~d~~k~~~~E~ 243 (493)
.+....|..||+.++....+-.- .+++...+...|.++++.+|.+++..+.-+.--+ +...+. ..+.
T Consensus 52 ~e~v~~~~~iL~~~l~~~~~~~l---~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~---~~~~~~-------~~~~ 118 (503)
T PF10508_consen 52 REQVELICDILKRLLSALSPDSL---LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHS---EGAAQL-------LVDN 118 (503)
T ss_pred hHHHHHHHHHHHHHHhccCHHHH---HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC---HHHHHH-------hcCc
Confidence 34456788999999998766444 6677888999999999999999988865443222 111221 2344
Q ss_pred cchHHHHhHhhccccccHHHHHHHHHHhhHHhcCCC
Q psy8949 244 KRFETLMDYFMNYEVFHIEFMVACMQFINIVVHSVE 279 (493)
Q Consensus 244 ~RF~~Lv~~l~~~e~~~~ey~~a~m~fIN~lV~s~e 279 (493)
.-+..++..+..+ +.+...+++..+-.+...++
T Consensus 119 ~l~~~i~~~L~~~---d~~Va~~A~~~L~~l~~~~~ 151 (503)
T PF10508_consen 119 ELLPLIIQCLRDP---DLSVAKAAIKALKKLASHPE 151 (503)
T ss_pred cHHHHHHHHHcCC---cHHHHHHHHHHHHHHhCCch
Confidence 4566677777653 45667777777777776654
No 11
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=71.35 E-value=1.3e+02 Score=33.06 Aligned_cols=129 Identities=11% Similarity=0.158 Sum_probs=71.3
Q ss_pred CCCcchHHHHHHHHHHhcchhhHHHHhcchhhHHHHHHhhcCCChhHHHHHHHHHHHHhccc---CchHHHHHHHHhhHh
Q psy8949 162 DPKDDIHVCILCLRAIMNNKYGLNMVIKHTEAINSIALSLMHKSLRTKALVLELLAAICLVT---GGHEIILAAFDNFKE 238 (493)
Q Consensus 162 ~~~dd~~~cI~CLkAIMN~~~Gl~~vl~~~~~i~~Ia~sL~s~~~~tr~lVlELLaalCl~~---~Gh~~VL~A~d~~k~ 238 (493)
+..+.+..|++||..++..+.- +.++-..+++..|...|.+.. ..-.+.-+ +.+|+|- .+. ..+.+.+
T Consensus 156 ~~~~~~~~~v~~L~~LL~~~~~-R~~f~~~~~v~~L~~~L~~~~-~~~Ql~Y~--~ll~lWlLSF~~~--~~~~~~~--- 226 (429)
T cd00256 156 TNNDYVQTAARCLQMLLRVDEY-RFAFVLADGVPTLVKLLSNAT-LGFQLQYQ--SIFCIWLLTFNPH--AAEVLKR--- 226 (429)
T ss_pred CCcchHHHHHHHHHHHhCCchH-HHHHHHccCHHHHHHHHhhcc-ccHHHHHH--HHHHHHHHhccHH--HHHhhcc---
Confidence 3456678899999999988744 444433337888887775322 11122222 2366652 222 1122211
Q ss_pred hccCCcchHHHHhHhhccccccHHHHHHHHHHhhHHhcCCCChhhHHHHHHHHHHCCChHHHHhhhh
Q psy8949 239 ICQESKRFETLMDYFMNYEVFHIEFMVACMQFINIVVHSVEDMNFRVHLQYEFSRLGLDSYLDKLRH 305 (493)
Q Consensus 239 ~~~E~~RF~~Lv~~l~~~e~~~~ey~~a~m~fIN~lV~s~eDl~~RVhLR~Ef~~lGL~~iL~kLr~ 305 (493)
..=+..+++-++.. .-..-..++++.|-|.+ ..+.+-..+--.-..+..+|+.++++.|..
T Consensus 227 ----~~~i~~l~~i~k~s-~KEKvvRv~l~~l~Nll-~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~ 287 (429)
T cd00256 227 ----LSLIQDLSDILKES-TKEKVIRIVLAIFRNLI-SKRVDREVKKTAALQMVQCKVLKTLQSLEQ 287 (429)
T ss_pred ----ccHHHHHHHHHHhh-hhHHHHHHHHHHHHHHh-hcccccchhhhHHHHHHHcChHHHHHHHhc
Confidence 12233444444432 11223577888888944 444333333334457888999999999964
No 12
>KOG0212|consensus
Probab=62.70 E-value=1.9e+02 Score=33.03 Aligned_cols=118 Identities=18% Similarity=0.304 Sum_probs=70.5
Q ss_pred HHHHHHHHHHhcchhhHHHHhcchhhHHHHHHhhcCCChhHHHHHHHHHHHHhcccC--chH-HHHHHHHhhHhhc---c
Q psy8949 168 HVCILCLRAIMNNKYGLNMVIKHTEAINSIALSLMHKSLRTKALVLELLAAICLVTG--GHE-IILAAFDNFKEIC---Q 241 (493)
Q Consensus 168 ~~cI~CLkAIMN~~~Gl~~vl~~~~~i~~Ia~sL~s~~~~tr~lVlELLaalCl~~~--Gh~-~VL~A~d~~k~~~---~ 241 (493)
..|+.-+..+.++..|=-.+..| +....+-.+|..++-.+--+++++++.+|.-++ |.. -+++-++-|++.. .
T Consensus 354 i~~L~Wi~~l~~~~p~ql~~h~~-~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~~~~~fl~sLL~~f~e~~~~l~ 432 (675)
T KOG0212|consen 354 IAVLNWIILLYHKAPGQLLVHND-SIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSPNLRKFLLSLLEMFKEDTKLLE 432 (675)
T ss_pred HHHHHHHHHHHhhCcchhhhhcc-HHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccccHHHHHHHHHHHHhhhhHHHH
Confidence 45677777777776663333333 345667778888888889999999999998763 333 3455577776421 1
Q ss_pred CC--------------cc-hHHHHhHhhccccccHHHHHHHHHHhhHHhcCCCChhhHHHHHHHH
Q psy8949 242 ES--------------KR-FETLMDYFMNYEVFHIEFMVACMQFINIVVHSVEDMNFRVHLQYEF 291 (493)
Q Consensus 242 E~--------------~R-F~~Lv~~l~~~e~~~~ey~~a~m~fIN~lV~s~eDl~~RVhLR~Ef 291 (493)
.+ .| |..+-.-+.. ..+.+|....++..|.++-+.+++ ..||+++
T Consensus 433 ~Rg~lIIRqlC~lL~aE~IYr~~a~ILe~--e~nl~FAstMV~~Ln~iLlTStEL---f~LR~~L 492 (675)
T KOG0212|consen 433 VRGNLIIRQLCLLLNAERIYRSIADILER--EENLKFASTMVQALNTILLTSTEL---FQLRNKL 492 (675)
T ss_pred hhhhHHHHHHHHHhCHHHHHHHHHHHHhc--cccchHHHHHHHHHHhhhcccHHH---HHHHHHH
Confidence 11 11 2222222222 346777877778887766654433 2345544
No 13
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=57.63 E-value=3.7e+02 Score=31.46 Aligned_cols=213 Identities=15% Similarity=0.171 Sum_probs=112.6
Q ss_pred CcchHHHHHHHHHHhcchhhHHHHhcchhhHHHHHHhhc-CCChhHHHHHHHHHHHHhccc---------CchHHHH---
Q psy8949 164 KDDIHVCILCLRAIMNNKYGLNMVIKHTEAINSIALSLM-HKSLRTKALVLELLAAICLVT---------GGHEIIL--- 230 (493)
Q Consensus 164 ~dd~~~cI~CLkAIMN~~~Gl~~vl~~~~~i~~Ia~sL~-s~~~~tr~lVlELLaalCl~~---------~Gh~~VL--- 230 (493)
....+.|+..|..+--..- .+..+...+++..+...|. ++..++...++-++..+|..+ +|-...+
T Consensus 384 ~~~~~val~iLy~LS~dd~-~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra 462 (708)
T PF05804_consen 384 PNFREVALKILYNLSMDDE-ARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRA 462 (708)
T ss_pred CchHHHHHHHHHHhccCHh-hHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHH
Confidence 3445668888888865544 3566777789999888776 456666555555555555543 3433222
Q ss_pred ---------HHHHhhHhhc-cCCcchHHHHhHhhc--cccccHHHHHHHHHHhhHHhcCCCChhhHHHHHHHHHHCCChH
Q psy8949 231 ---------AAFDNFKEIC-QESKRFETLMDYFMN--YEVFHIEFMVACMQFINIVVHSVEDMNFRVHLQYEFSRLGLDS 298 (493)
Q Consensus 231 ---------~A~d~~k~~~-~E~~RF~~Lv~~l~~--~e~~~~ey~~a~m~fIN~lV~s~eDl~~RVhLR~Ef~~lGL~~ 298 (493)
+-+.|....- ..+..|..++.-+-. ......++.+.|+.-++-+-.+ |+++--.+ ...+|.+
T Consensus 463 ~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~--~ld~~~ll----~~~~llp 536 (708)
T PF05804_consen 463 LKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIP--DLDWAQLL----QEYNLLP 536 (708)
T ss_pred HhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccC--CcCHHHHH----HhCCHHH
Confidence 2222222222 345567777765432 1123668999999988877653 44444443 3578888
Q ss_pred HHHhhhhh--hhhhhhhHHHhhhh------hhhHH-----HHHHHHHhhhhccccchhhhhhHHHHHh-hchHHHHhhh-
Q psy8949 299 YLDKLRHT--ETLLLHCYLLCLYF------YRVQV-----ACMQFINIVVHSVEDMNFRVHLQYEFSR-LGLDSYLDKL- 363 (493)
Q Consensus 299 iL~kLr~~--e~~~lq~qi~~~~~------~e~~~-----~~~~~~~al~~~~~d~d~r~~~r~~~~~-~~~~~~v~~L- 363 (493)
+|.++=.. ..+.+..++=.+-. .+..- -+-.+++-+...-||-++++..-|.|-+ +..++.-+.+
T Consensus 537 ~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll 616 (708)
T PF05804_consen 537 WLKDLLKPGASEDDLLLEVVILLGTLASDPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETREVLL 616 (708)
T ss_pred HHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHH
Confidence 88776432 12223222222111 11110 1233344444445777788777777766 3333333333
Q ss_pred hcccchhHHHHHHHhhhhhc
Q psy8949 364 RHTESEELQVACMQFINIVV 383 (493)
Q Consensus 364 ~~~~n~~~~v~~m~fiN~li 383 (493)
+.++-+.|.+.+|.==|+.|
T Consensus 617 ~~~~~~~ylidL~~d~N~~i 636 (708)
T PF05804_consen 617 KETEIPAYLIDLMHDKNAEI 636 (708)
T ss_pred hccchHHHHHHHhcCCCHHH
Confidence 33444444444444444333
No 14
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=54.75 E-value=33 Score=28.44 Aligned_cols=53 Identities=8% Similarity=0.114 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhcchhhHHHHhcchhhHHHHHHhhcCCChhHHHHHHHHHHHHh
Q psy8949 168 HVCILCLRAIMNNKYGLNMVIKHTEAINSIALSLMHKSLRTKALVLELLAAIC 220 (493)
Q Consensus 168 ~~cI~CLkAIMN~~~Gl~~vl~~~~~i~~Ia~sL~s~~~~tr~lVlELLaalC 220 (493)
..++.||..|..+.......+-....+..+...+...+..++..++.+|..+|
T Consensus 67 ~~a~~~L~~l~~~~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 67 KAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHHHHHccCcHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 46778888887666555555555668999999999999999999999999887
No 15
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=53.20 E-value=4.5 Score=37.70 Aligned_cols=23 Identities=48% Similarity=0.765 Sum_probs=19.1
Q ss_pred HHHHHHHhhhcCCCcchhhhccchh
Q psy8949 5 ILWVKEFLNDDNHGLDSLIEYLSFR 29 (493)
Q Consensus 5 ~~w~~~fl~~~n~gl~~~~eyL~~~ 29 (493)
+.||++|++. +|+++|++.|..-
T Consensus 97 ~~Wv~~Fl~~--~G~~~L~~~L~~~ 119 (187)
T PF06371_consen 97 ISWVQEFLEL--GGLEALLNVLSKL 119 (187)
T ss_dssp HHHHHHH-HH--HHHHHHHHHHHHH
T ss_pred chHHHHhccC--CCHHHHHHHHHHh
Confidence 6899999974 7999999988775
No 16
>KOG2759|consensus
Probab=53.05 E-value=3.5e+02 Score=29.76 Aligned_cols=129 Identities=12% Similarity=0.134 Sum_probs=70.9
Q ss_pred CCCcchHHHHHHHHHHhcchhhHHHHhcchhhHHHHHHhhcCCChhHHHHHHHHHHHHhccc---CchHHHHHHHHhhHh
Q psy8949 162 DPKDDIHVCILCLRAIMNNKYGLNMVIKHTEAINSIALSLMHKSLRTKALVLELLAAICLVT---GGHEIILAAFDNFKE 238 (493)
Q Consensus 162 ~~~dd~~~cI~CLkAIMN~~~Gl~~vl~~~~~i~~Ia~sL~s~~~~tr~lVlELLaalCl~~---~Gh~~VL~A~d~~k~ 238 (493)
.+.+-...|++||..++--+.- +..+=..+++..+..++.|....+..+ -=+.+|+|- ++|-. +-+.+|.
T Consensus 169 ~~~~~~~~~~rcLQ~ll~~~ey-R~~~v~adg~~~l~~~l~s~~~~~QlQ---YqsifciWlLtFn~~~a--e~~~~~~- 241 (442)
T KOG2759|consen 169 TNNDYIQFAARCLQTLLRVDEY-RYAFVIADGVSLLIRILASTKCGFQLQ---YQSIFCIWLLTFNPHAA--EKLKRFD- 241 (442)
T ss_pred CCCchHHHHHHHHHHHhcCcch-hheeeecCcchhhHHHHhccCcchhHH---HHHHHHHHHhhcCHHHH--HHHhhcc-
Confidence 3456666777888777655421 222222334555555554333333222 123355552 44432 2222221
Q ss_pred hccCCcchHHHHhHhhccccccHHHHHHHHHHhhHHhcCCCChhhHHHHHHHHHHCCChHHHHhhhh
Q psy8949 239 ICQESKRFETLMDYFMNYEVFHIEFMVACMQFINIVVHSVEDMNFRVHLQYEFSRLGLDSYLDKLRH 305 (493)
Q Consensus 239 ~~~E~~RF~~Lv~~l~~~e~~~~ey~~a~m~fIN~lV~s~eDl~~RVhLR~Ef~~lGL~~iL~kLr~ 305 (493)
=++.+.+-++.. .-..-+.+.+..|.| ++.+++|-..+=..-..+..+++.+.++-|..
T Consensus 242 ------li~~L~~Ivk~~-~KEKV~Rivlai~~N-ll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~ 300 (442)
T KOG2759|consen 242 ------LIQDLSDIVKES-TKEKVTRIVLAIFRN-LLDKGPDRETKKDIASQMVLCKVLKTLQSLEE 300 (442)
T ss_pred ------HHHHHHHHHHHH-HHHHHHHHHHHHHHH-HhccCchhhHHHHHHHHHHhcCchHHHHHHHh
Confidence 133344444331 123346777888899 66777777777777788999999999988864
No 17
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=51.02 E-value=2.2e+02 Score=29.20 Aligned_cols=123 Identities=15% Similarity=0.148 Sum_probs=69.9
Q ss_pred HHHHHHHHHHhcchhhHHHHhcchhhHHHHHHhhcCCChhHHHHHHHHH--HHHhccc-CchHHHHHHHHhhHhhccCCc
Q psy8949 168 HVCILCLRAIMNNKYGLNMVIKHTEAINSIALSLMHKSLRTKALVLELL--AAICLVT-GGHEIILAAFDNFKEICQESK 244 (493)
Q Consensus 168 ~~cI~CLkAIMN~~~Gl~~vl~~~~~i~~Ia~sL~s~~~~tr~lVlELL--aalCl~~-~Gh~~VL~A~d~~k~~~~E~~ 244 (493)
..|++||..++..+. .+.++-+.+++..+...|..........-+|++ +.+|+|- .-.+.+.+.|....
T Consensus 168 ~~av~~L~~LL~~~~-~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~------- 239 (312)
T PF03224_consen 168 YIAVQCLQNLLRSKE-YRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKY------- 239 (312)
T ss_dssp HHHHHHHHHHHTSHH-HHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTS-------
T ss_pred HHHHHHHHHHhCcch-hHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccc-------
Confidence 789999999997764 455555588888888877322212222233333 3466663 23334444443221
Q ss_pred chHHHHhHhhccccccHHHHHHHHHHhhHHhcCCCChhhHHHHHHHHHHCCChHHHHhhhh
Q psy8949 245 RFETLMDYFMNYEVFHIEFMVACMQFINIVVHSVEDMNFRVHLQYEFSRLGLDSYLDKLRH 305 (493)
Q Consensus 245 RF~~Lv~~l~~~e~~~~ey~~a~m~fIN~lV~s~eDl~~RVhLR~Ef~~lGL~~iL~kLr~ 305 (493)
=+..+++-++... -..-..++.+.|-|.+-..++. .-..+..+|+.++++.|..
T Consensus 240 ~i~~L~~i~~~~~-KEKvvRv~la~l~Nl~~~~~~~------~~~~mv~~~~l~~l~~L~~ 293 (312)
T PF03224_consen 240 LIPLLADILKDSI-KEKVVRVSLAILRNLLSKAPKS------NIELMVLCGLLKTLQNLSE 293 (312)
T ss_dssp HHHHHHHHHHH---SHHHHHHHHHHHHHTTSSSSTT------HHHHHHHH-HHHHHHHHHS
T ss_pred hHHHHHHHHHhcc-cchHHHHHHHHHHHHHhccHHH------HHHHHHHccHHHHHHHHhc
Confidence 2334444444321 1234578888999966555554 5667788899999998864
No 18
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=50.82 E-value=1.4e+02 Score=24.54 Aligned_cols=56 Identities=9% Similarity=0.072 Sum_probs=45.0
Q ss_pred hHHHHHHHHHHhcc-hhhHHHHhcchhhHHHHHHhhcCCChhHHHHHHHHHHHHhccc
Q psy8949 167 IHVCILCLRAIMNN-KYGLNMVIKHTEAINSIALSLMHKSLRTKALVLELLAAICLVT 223 (493)
Q Consensus 167 ~~~cI~CLkAIMN~-~~Gl~~vl~~~~~i~~Ia~sL~s~~~~tr~lVlELLaalCl~~ 223 (493)
...++.||..+... ..+...++. ..++..+...|.+++++++..++-.|+.+|..+
T Consensus 24 ~~~a~~~l~~l~~~~~~~~~~~~~-~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 24 QREAAWALSNLSAGNNDNIQAVVE-AGGLPALVQLLKSEDEEVVKAALWALRNLAAGP 80 (120)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHH-CCChHHHHHHHhCCCHHHHHHHHHHHHHHccCc
Confidence 35778888888766 455555554 578999999999999999999999999998754
No 19
>KOG1062|consensus
Probab=50.47 E-value=91 Score=36.60 Aligned_cols=80 Identities=16% Similarity=0.181 Sum_probs=49.8
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHHhcccCchHHHHHHHHhhHhhccCCcchHHHHhHhhccccccHHHHHHHHHHhhHH
Q psy8949 195 NSIALSLMHKSLRTKALVLELLAAICLVTGGHEIILAAFDNFKEICQESKRFETLMDYFMNYEVFHIEFMVACMQFINIV 274 (493)
Q Consensus 195 ~~Ia~sL~s~~~~tr~lVlELLaalCl~~~Gh~~VL~A~d~~k~~~~E~~RF~~Lv~~l~~~e~~~~ey~~a~m~fIN~l 274 (493)
..|.-||..|....|+-++||+.++.--.+=..+| +-++.++.+ ..-+|+..|.+=|--+
T Consensus 353 ~tIleCL~DpD~SIkrralELs~~lvn~~Nv~~mv-----------------~eLl~fL~~---~d~~~k~~~as~I~~l 412 (866)
T KOG1062|consen 353 STILECLKDPDVSIKRRALELSYALVNESNVRVMV-----------------KELLEFLES---SDEDFKADIASKIAEL 412 (866)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHhccccHHHHH-----------------HHHHHHHHh---ccHHHHHHHHHHHHHH
Confidence 56788888888888888888887765432212222 123444543 2456777777777766
Q ss_pred hcCCCChhhHHHHHHH---HHHCC
Q psy8949 275 VHSVEDMNFRVHLQYE---FSRLG 295 (493)
Q Consensus 275 V~s~eDl~~RVhLR~E---f~~lG 295 (493)
+.. -..+.|.||+.- |..+|
T Consensus 413 aEk-faP~k~W~idtml~Vl~~aG 435 (866)
T KOG1062|consen 413 AEK-FAPDKRWHIDTMLKVLKTAG 435 (866)
T ss_pred HHh-cCCcchhHHHHHHHHHHhcc
Confidence 664 223678887763 55555
No 20
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=50.00 E-value=34 Score=36.52 Aligned_cols=64 Identities=22% Similarity=0.389 Sum_probs=51.4
Q ss_pred HHHHHHHHHHhcchhhHHHHhcchhhHHHHHHhhcCCChhHHHHHHHHHHHHhccc-------CchHHHHHHH
Q psy8949 168 HVCILCLRAIMNNKYGLNMVIKHTEAINSIALSLMHKSLRTKALVLELLAAICLVT-------GGHEIILAAF 233 (493)
Q Consensus 168 ~~cI~CLkAIMN~~~Gl~~vl~~~~~i~~Ia~sL~s~~~~tr~lVlELLaalCl~~-------~Gh~~VL~A~ 233 (493)
-++++.+|+++..+-|.+.+ ....+++|+....++.-+.|..++|.|+-+|+.. ||...+++++
T Consensus 86 ~QALkliR~~l~~~~~~~~~--~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l 156 (371)
T PF14664_consen 86 EQALKLIRAFLEIKKGPKEI--PRGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRAL 156 (371)
T ss_pred HHHHHHHHHHHHhcCCcccC--CHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHH
Confidence 47899999999998787665 3446788888888999999999999999988863 6776666665
No 21
>PF05536 Neurochondrin: Neurochondrin
Probab=42.31 E-value=70 Score=35.93 Aligned_cols=55 Identities=16% Similarity=0.243 Sum_probs=46.0
Q ss_pred hHHHHHHHHHHhcchhhHHHHhcchhhHHHHHHhhcCCChhHHHHHHHHHHHHhccc
Q psy8949 167 IHVCILCLRAIMNNKYGLNMVIKHTEAINSIALSLMHKSLRTKALVLELLAAICLVT 223 (493)
Q Consensus 167 ~~~cI~CLkAIMN~~~Gl~~vl~~~~~i~~Ia~sL~s~~~~tr~lVlELLaalCl~~ 223 (493)
..+|+.||-+|..++.|.+.+++. ++|..++..+.+ ++..+..++.+|..+|...
T Consensus 116 v~dalqcL~~Ias~~~G~~aLl~~-g~v~~L~ei~~~-~~~~~E~Al~lL~~Lls~~ 170 (543)
T PF05536_consen 116 VDDALQCLLAIASSPEGAKALLES-GAVPALCEIIPN-QSFQMEIALNLLLNLLSRL 170 (543)
T ss_pred HHHHHHHHHHHHcCcHhHHHHHhc-CCHHHHHHHHHh-CcchHHHHHHHHHHHHHhc
Confidence 568999999999999999999986 567888887776 6677889999998888753
No 22
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=33.52 E-value=77 Score=21.12 Aligned_cols=28 Identities=21% Similarity=0.131 Sum_probs=22.5
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHHhc
Q psy8949 194 INSIALSLMHKSLRTKALVLELLAAICL 221 (493)
Q Consensus 194 i~~Ia~sL~s~~~~tr~lVlELLaalCl 221 (493)
+..+...+..+++.+|..+.+.|..++-
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 3456777889999999999999998874
No 23
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=29.52 E-value=4.2e+02 Score=31.02 Aligned_cols=114 Identities=15% Similarity=0.194 Sum_probs=74.4
Q ss_pred HHHHHHHHHHhcch--hhHHHHhcchhhHHHHHHhhcCCChhHHHHHHHHHHHHhcccCchHHHHHHHHhhHhhccCCcc
Q psy8949 168 HVCILCLRAIMNNK--YGLNMVIKHTEAINSIALSLMHKSLRTKALVLELLAAICLVTGGHEIILAAFDNFKEICQESKR 245 (493)
Q Consensus 168 ~~cI~CLkAIMN~~--~Gl~~vl~~~~~i~~Ia~sL~s~~~~tr~lVlELLaalCl~~~Gh~~VL~A~d~~k~~~~E~~R 245 (493)
..+--|+..++|-. ...+..|.+.+.|..|+.+|.+.+.....+++-+|--++++......+. +.+=
T Consensus 264 qLlrv~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~-----------~~gi 332 (708)
T PF05804_consen 264 QLLRVAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMA-----------ESGI 332 (708)
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHH-----------HcCC
Confidence 45556777777654 3556667788899999999999999999999999999998865444432 2223
Q ss_pred hHHHHhHhhccccccHHH-HHHHHHHhhHHhcCCCChhhHHHHHHHHHHCCChHHHHhh
Q psy8949 246 FETLMDYFMNYEVFHIEF-MVACMQFINIVVHSVEDMNFRVHLQYEFSRLGLDSYLDKL 303 (493)
Q Consensus 246 F~~Lv~~l~~~e~~~~ey-~~a~m~fIN~lV~s~eDl~~RVhLR~Ef~~lGL~~iL~kL 303 (493)
..+|+..+.+. +.+. .++...+.| +=..+ -+|..+..+|+.+-|-.+
T Consensus 333 V~kL~kLl~s~---~~~l~~~aLrlL~N-LSfd~-------~~R~~mV~~GlIPkLv~L 380 (708)
T PF05804_consen 333 VEKLLKLLPSE---NEDLVNVALRLLFN-LSFDP-------ELRSQMVSLGLIPKLVEL 380 (708)
T ss_pred HHHHHHHhcCC---CHHHHHHHHHHHHH-hCcCH-------HHHHHHHHCCCcHHHHHH
Confidence 34555556543 2333 334444455 22222 257788999987766555
No 24
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=29.28 E-value=1.3e+02 Score=25.65 Aligned_cols=50 Identities=16% Similarity=0.331 Sum_probs=34.3
Q ss_pred cchHHHHHHHHHHhcchhhHHHHhcchhhHHHHHHhhcCCChhHHHHHHHHHHHHhc
Q psy8949 165 DDIHVCILCLRAIMNNKYGLNMVIKHTEAINSIALSLMHKSLRTKALVLELLAAICL 221 (493)
Q Consensus 165 dd~~~cI~CLkAIMN~~~Gl~~vl~~~~~i~~Ia~sL~s~~~~tr~lVlELLaalCl 221 (493)
.|.-++++|++.+- .+ . .+++.+..+..+-...+...+..+..+|..+|-
T Consensus 16 ~D~~ea~~~l~~L~-~~-~-----~~~~vv~~~i~~~le~~~~~~~~~~~Ll~~L~~ 65 (113)
T smart00544 16 GDTDEAVHCLLELK-LP-E-----QHHEVVKVLLTCALEEKRTYREMYSVLLSRLCQ 65 (113)
T ss_pred CCHHHHHHHHHHhC-CC-c-----chHHHHHHHHHHHHcCCccHHHHHHHHHHHHHH
Confidence 46678999998863 22 1 255555544444444567889999999999994
No 25
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=29.21 E-value=1.8e+02 Score=24.74 Aligned_cols=65 Identities=18% Similarity=0.408 Sum_probs=43.1
Q ss_pred chHHHHHHHHHHhcchhhHHHHhcchhhHHHHHHhhcCCChhHHHHHHHHHHHHhccc--------CchHHHHHHHHhhH
Q psy8949 166 DIHVCILCLRAIMNNKYGLNMVIKHTEAINSIALSLMHKSLRTKALVLELLAAICLVT--------GGHEIILAAFDNFK 237 (493)
Q Consensus 166 d~~~cI~CLkAIMN~~~Gl~~vl~~~~~i~~Ia~sL~s~~~~tr~lVlELLaalCl~~--------~Gh~~VL~A~d~~k 237 (493)
|.-+.+.|++.+ +.+ -.++..+..+..+....+...|..+.++|+.+|--. .|.+.+++.++.+.
T Consensus 17 d~~ea~~~l~el-~~~------~~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~~~~~~~~~gf~~~l~~l~Dl~ 89 (113)
T PF02847_consen 17 DVDEAVECLKEL-KLP------SQHHEVVKVILECALEEKKSYREYYSKLLSHLCKRKLISKEQFQEGFEDLLESLEDLE 89 (113)
T ss_dssp -HHHHHHHHHHT-T-G------GGHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHh-CCC------ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhHhhhcc
Confidence 456778888774 322 234556777777767778899999999999999532 35555555555543
No 26
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=28.56 E-value=2.2e+02 Score=27.67 Aligned_cols=50 Identities=16% Similarity=0.205 Sum_probs=38.0
Q ss_pred hhhHHHHHHhhcCCChhHHHHHHHHHHHHhcccC--c------hHHHHHHHHhhHhhc
Q psy8949 191 TEAINSIALSLMHKSLRTKALVLELLAAICLVTG--G------HEIILAAFDNFKEIC 240 (493)
Q Consensus 191 ~~~i~~Ia~sL~s~~~~tr~lVlELLaalCl~~~--G------h~~VL~A~d~~k~~~ 240 (493)
|+.|..|=.+|++.++.+..-++++|..++...+ | +..+|..+.-|+...
T Consensus 79 PqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~aLvPyyrqLLp~ln~f~~k~ 136 (183)
T PF10274_consen 79 PQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGEALVPYYRQLLPVLNLFKNKN 136 (183)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcc
Confidence 5677888899999999999999999999865432 2 445677777666543
No 27
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=26.18 E-value=70 Score=23.33 Aligned_cols=31 Identities=16% Similarity=0.285 Sum_probs=26.3
Q ss_pred HHhcchhhHHHHHHhhcCCChhHHHHHHHHH
Q psy8949 186 MVIKHTEAINSIALSLMHKSLRTKALVLELL 216 (493)
Q Consensus 186 ~vl~~~~~i~~Ia~sL~s~~~~tr~lVlELL 216 (493)
.++..+.....|...+.-+.+.+|..++|++
T Consensus 12 ~ll~~~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 12 TLLDSSDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred cccchHHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 4667777888999999999999999999874
No 28
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=25.70 E-value=5.8e+02 Score=24.20 Aligned_cols=77 Identities=12% Similarity=0.132 Sum_probs=52.4
Q ss_pred cCCCCCcchHHHHHHHHHHhcchhhHHHHhcchh-hHHHHHHhhcCCChhHHHHHHHHHHHHhcccCc------hHHHHH
Q psy8949 159 NMGDPKDDIHVCILCLRAIMNNKYGLNMVIKHTE-AINSIALSLMHKSLRTKALVLELLAAICLVTGG------HEIILA 231 (493)
Q Consensus 159 ~m~~~~dd~~~cI~CLkAIMN~~~Gl~~vl~~~~-~i~~Ia~sL~s~~~~tr~lVlELLaalCl~~~G------h~~VL~ 231 (493)
++..+..-....+++++.+.+.. +.||. ++..+..-..+|++.+|..|.+++..++--..| -+-|-.
T Consensus 17 ~~~~~~~vr~~Al~~l~~il~qG------LvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~~~~~gi~~ 90 (187)
T PF12830_consen 17 CLSSDDSVRLAALQVLELILRQG------LVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVESRYSEGIRL 90 (187)
T ss_pred HhCCCHHHHHHHHHHHHHHHhcC------CCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 34444555578899999998754 35676 777777777789999999999999998853211 122455
Q ss_pred HHHhhHhhcc
Q psy8949 232 AFDNFKEICQ 241 (493)
Q Consensus 232 A~d~~k~~~~ 241 (493)
|++.-+...+
T Consensus 91 af~~~~~l~~ 100 (187)
T PF12830_consen 91 AFDYQRRLSS 100 (187)
T ss_pred HHHHHHHhcC
Confidence 6666554433
No 29
>PHA02994 hypothetical protein; Provisional
Probab=25.64 E-value=55 Score=32.50 Aligned_cols=82 Identities=15% Similarity=0.148 Sum_probs=65.6
Q ss_pred hhhHHHHHHHhhhcCCCcchh---hhccchhhhhhhhhhhhcccccchhhhhcccc--ccccCCChhHHHHHhcccccch
Q psy8949 2 SILILWVKEFLNDDNHGLDSL---IEYLSFRLVMMRHEYRIADSKHLSEETLNTSS--EKCDKPPYRWVKEFLNDDNHGL 76 (493)
Q Consensus 2 ~~~~~w~~~fl~~~n~gl~~~---~eyL~~~~~~~~~~~r~~es~~~st~~L~~Le--isLRTn~i~WV~eFln~~n~Gl 76 (493)
||-++=+=+.|-+++.++..+ .|+|-|.++.+.|+.---+.++..-+.+|++= +..||++..=+++|+++.-.+.
T Consensus 75 sisv~~Ly~~l~~~~~~~~~iyFV~D~l~fDG~PPsFr~v~~dv~~~~RkkirDli~Li~m~tc~~~ii~~Fi~~NFG~v 154 (218)
T PHA02994 75 SISVEKLYNSMMRNRIKPIKIYFVRDNLAFDGIPPSFRMVNIDVKIYNRKKIKDLIILINMKTCNKKIIKDFINDNFGSV 154 (218)
T ss_pred eeeHHHHHHHHHhcCCCceEEEEEeeceeeccCCCcceeecchHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHhccccH
Confidence 455566666777788887777 89999999999998766667677777788763 4569999999999999988999
Q ss_pred HHHHHHH
Q psy8949 77 DSLIEYL 83 (493)
Q Consensus 77 ~~L~eyL 83 (493)
+.|+.-+
T Consensus 155 ~~Ll~ii 161 (218)
T PHA02994 155 DTLLSII 161 (218)
T ss_pred HHHHHHH
Confidence 9998755
No 30
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=23.83 E-value=5e+02 Score=26.38 Aligned_cols=90 Identities=18% Similarity=0.276 Sum_probs=59.8
Q ss_pred CCcchHHHHHHHHHHhcc--hhhHHHHhcchh---------hHHHHHHhhcCCChhHHHHHHHHHHHHhccc--CchHHH
Q psy8949 163 PKDDIHVCILCLRAIMNN--KYGLNMVIKHTE---------AINSIALSLMHKSLRTKALVLELLAAICLVT--GGHEII 229 (493)
Q Consensus 163 ~~dd~~~cI~CLkAIMN~--~~Gl~~vl~~~~---------~i~~Ia~sL~s~~~~tr~lVlELLaalCl~~--~Gh~~V 229 (493)
++++.-..+.|+++|.+- .||...+-..+. .+..+...|.+.++.++..+.|-++-+-+.. ..+..|
T Consensus 74 ~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~~~~v 153 (298)
T PF12719_consen 74 QKDDEEVKITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISDPPKV 153 (298)
T ss_pred HhCCHHHHHHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 345666778899998654 578776665553 6778888899999999999999999988764 233667
Q ss_pred HHHH--HhhHhhccCCcchHHHHhH
Q psy8949 230 LAAF--DNFKEICQESKRFETLMDY 252 (493)
Q Consensus 230 L~A~--d~~k~~~~E~~RF~~Lv~~ 252 (493)
++++ .+|.-...+..|.+-.+.+
T Consensus 154 L~~Lll~yF~p~t~~~~~LrQ~L~~ 178 (298)
T PF12719_consen 154 LSRLLLLYFNPSTEDNQRLRQCLSV 178 (298)
T ss_pred HHHHHHHHcCcccCCcHHHHHHHHH
Confidence 6663 3333333333344444433
No 31
>KOG4199|consensus
Probab=23.38 E-value=6.5e+02 Score=27.31 Aligned_cols=111 Identities=19% Similarity=0.290 Sum_probs=72.4
Q ss_pred HHHHHHHHHHhcchhhHHHHhcchhhHHHHHHhhc-CCChhHHHHHHHHHHHHhccc----------CchHHHHHHHHhh
Q psy8949 168 HVCILCLRAIMNNKYGLNMVIKHTEAINSIALSLM-HKSLRTKALVLELLAAICLVT----------GGHEIILAAFDNF 236 (493)
Q Consensus 168 ~~cI~CLkAIMN~~~Gl~~vl~~~~~i~~Ia~sL~-s~~~~tr~lVlELLaalCl~~----------~Gh~~VL~A~d~~ 236 (493)
-.|+.=||||--+..-=..++.....=..+++.+. +.+|.+-..++-+++.+|+-. ||-..+++||..+
T Consensus 305 k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkah 384 (461)
T KOG4199|consen 305 KTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAH 384 (461)
T ss_pred HHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhC
Confidence 46888899997665544555554443344555555 567888888999999999854 3344456666554
Q ss_pred HhhccCCcchHHHHhHhhccccccHHHHHHHHHHhhHHhcCCCChhhHHHHHHHHHHCCChHHHHhhhh
Q psy8949 237 KEICQESKRFETLMDYFMNYEVFHIEFMVACMQFINIVVHSVEDMNFRVHLQYEFSRLGLDSYLDKLRH 305 (493)
Q Consensus 237 k~~~~E~~RF~~Lv~~l~~~e~~~~ey~~a~m~fIN~lV~s~eDl~~RVhLR~Ef~~lGL~~iL~kLr~ 305 (493)
-.. ..--.-+|+..=|.+++|.+. |.-+...|...++..-+.
T Consensus 385 P~~--------------------a~vQrnac~~IRNiv~rs~~~-------~~~~l~~GiE~Li~~A~~ 426 (461)
T KOG4199|consen 385 PVA--------------------AQVQRNACNMIRNIVVRSAEN-------RTILLANGIEKLIRTAKA 426 (461)
T ss_pred cHH--------------------HHHHHHHHHHHHHHHHhhhhc-------cchHHhccHHHHHHHHHh
Confidence 321 111246899999999999763 334567788777766654
No 32
>PF04031 Las1: Las1-like ; InterPro: IPR007174 Las1 is an essential nuclear protein involved in cell morphogenesis and cell surface growth [].
Probab=22.92 E-value=1e+02 Score=28.86 Aligned_cols=46 Identities=24% Similarity=0.440 Sum_probs=36.6
Q ss_pred HHHHHHHHHHhhHHhcCCCChhhHHHHHHHHHHCCChHHHHhhhhh
Q psy8949 261 IEFMVACMQFINIVVHSVEDMNFRVHLQYEFSRLGLDSYLDKLRHT 306 (493)
Q Consensus 261 ~ey~~a~m~fIN~lV~s~eDl~~RVhLR~Ef~~lGL~~iL~kLr~~ 306 (493)
.-|..|.+-|||.++....+-.+=.-+..--..+||.+.|-.+|+.
T Consensus 78 ~~ysmaivRfVNgl~D~~Q~~~~a~si~~~A~~iglP~~lVdlRH~ 123 (154)
T PF04031_consen 78 LSYSMAIVRFVNGLVDPSQQGKYARSIASLAKEIGLPSWLVDLRHE 123 (154)
T ss_pred HHHHHhHHHHHHHhhhHhhccchhhhHHHHHHHcCCCHHHHHHHHH
Confidence 4688999999999999865434445666667889999999999984
No 33
>COG4828 Predicted membrane protein [Function unknown]
Probab=22.02 E-value=3.7e+02 Score=24.05 Aligned_cols=98 Identities=18% Similarity=0.257 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHhcccCchHHHHHHHHhhHhhccCCcchHHHHhHhhccccccHHHHHHHHHHhhHHhcCCCChhhHHHHH
Q psy8949 209 KALVLELLAAICLVTGGHEIILAAFDNFKEICQESKRFETLMDYFMNYEVFHIEFMVACMQFINIVVHSVEDMNFRVHLQ 288 (493)
Q Consensus 209 r~lVlELLaalCl~~~Gh~~VL~A~d~~k~~~~E~~RF~~Lv~~l~~~e~~~~ey~~a~m~fIN~lV~s~eDl~~RVhLR 288 (493)
-..++|..+++|+..||-+.+..-|- ++..+.+.-|+.+-..+.+.-....+|..++=.+--..= +. .
T Consensus 14 f~~~fe~v~~l~IiyGglra~~~ifl--~e~~k~p~~~~~iRkelt~ki~fgLEf~i~adil~T~r~---Pt-------~ 81 (113)
T COG4828 14 FAVVFEAVSVLLIIYGGLRAVAMIFL--REVHKKPEVYESIRKELTNKIAFGLEFLIAADILETARA---PT-------L 81 (113)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHH--HHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---cc-------H
Confidence 35688999999998888877754443 555555666666666665433334444444332221111 11 1
Q ss_pred HHHHHCCChHHHHhhhhhhhhhhhhHHHhhhhh
Q psy8949 289 YEFSRLGLDSYLDKLRHTETLLLHCYLLCLYFY 321 (493)
Q Consensus 289 ~Ef~~lGL~~iL~kLr~~e~~~lq~qi~~~~~~ 321 (493)
.++..+|. +.-+|..=+.-++|+++.|+.+
T Consensus 82 edL~~LG~---Iv~IRT~LgYFL~KEieey~~~ 111 (113)
T COG4828 82 EDLSKLGA---IVLIRTVLGYFLSKEIEEYERD 111 (113)
T ss_pred HHHHHhhH---HHHHHHHHHHHHHHHHHHHHhc
Confidence 12333333 3333444455577777777654
No 34
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=21.60 E-value=2.3e+02 Score=24.69 Aligned_cols=49 Identities=18% Similarity=0.334 Sum_probs=34.8
Q ss_pred CcchHHHHHHHHHHhcchhhHHHHhcchhhHHHHHHhhcCCChhHHHHHHHHH
Q psy8949 164 KDDIHVCILCLRAIMNNKYGLNMVIKHTEAINSIALSLMHKSLRTKALVLELL 216 (493)
Q Consensus 164 ~dd~~~cI~CLkAIMN~~~Gl~~vl~~~~~i~~Ia~sL~s~~~~tr~lVlELL 216 (493)
.+....+++|+++.+. -...+.+.+++ .+..+...|.++.. +..++|.|
T Consensus 100 ~~~~~~~L~~l~s~i~-~~~~~~i~~~~-~l~~~~~~l~~~~~--~~~A~~cl 148 (148)
T PF08389_consen 100 EELVKAALKCLKSWIS-WIPIELIINSN-LLNLIFQLLQSPEL--REAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHTT-TS-HHHHHSSS-HHHHHHHHTTSCCC--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-hCCHHHhccHH-HHHHHHHHcCCHHH--HHHHHHhC
Confidence 3445689999999998 45677777755 88888888855554 66776654
No 35
>KOG4500|consensus
Probab=20.42 E-value=4.9e+02 Score=29.09 Aligned_cols=31 Identities=13% Similarity=0.203 Sum_probs=24.0
Q ss_pred hHHHHHHhhcCCChhHHHHHHHHHHHHhccc
Q psy8949 193 AINSIALSLMHKSLRTKALVLELLAAICLVT 223 (493)
Q Consensus 193 ~i~~Ia~sL~s~~~~tr~lVlELLaalCl~~ 223 (493)
++..+..-..|+...+..+..-.|+.+|+-+
T Consensus 88 ~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn 118 (604)
T KOG4500|consen 88 ALELLRQTPSSPDTEVHEQCFRALGNICYDN 118 (604)
T ss_pred HHHHHHhCCCCCcccHHHHHHHHHhhhhccC
Confidence 4555566666777778899999999999875
No 36
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=20.24 E-value=2.2e+02 Score=29.68 Aligned_cols=113 Identities=19% Similarity=0.214 Sum_probs=66.8
Q ss_pred HHHHHHHHHhcchhhHHHHhcchhhHHHHHHhhcCCChhHHHHHHHHHHHHhcccCch-H-HHHHHHHhhHhhccCCcch
Q psy8949 169 VCILCLRAIMNNKYGLNMVIKHTEAINSIALSLMHKSLRTKALVLELLAAICLVTGGH-E-IILAAFDNFKEICQESKRF 246 (493)
Q Consensus 169 ~cI~CLkAIMN~~~Gl~~vl~~~~~i~~Ia~sL~s~~~~tr~lVlELLaalCl~~~Gh-~-~VL~A~d~~k~~~~E~~RF 246 (493)
....+.|.|+++. +..|..+|.+.......-++.||++++.+.+|- . .|+.+|+-= ...|
T Consensus 45 ~g~~l~~~iL~~~------------~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~------~~~l 106 (330)
T PF11707_consen 45 YGLELIRSILQNH------------LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFS------LKSL 106 (330)
T ss_pred HHHHHHHHHHHHH------------HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCc------hhhH
Confidence 3566677777653 788999999999888889999999999987652 2 466666322 1122
Q ss_pred HHHHhHhh----cc----ccccHHHHHHHHHHhhHHhcCCCChhhHHHHHHHHHHCC--ChHHHHhhhh
Q psy8949 247 ETLMDYFM----NY----EVFHIEFMVACMQFINIVVHSVEDMNFRVHLQYEFSRLG--LDSYLDKLRH 305 (493)
Q Consensus 247 ~~Lv~~l~----~~----e~~~~ey~~a~m~fIN~lV~s~eDl~~RVhLR~Ef~~lG--L~~iL~kLr~ 305 (493)
..++..=+ .. ... .+..++.+.|+=+++...+ -.++.++...+ +..++..|+.
T Consensus 107 ~kll~~~~~~~~~~~~~~~~~-~siR~~fI~F~Lsfl~~~~-----~~~~~~lL~~~~~~~~l~k~l~~ 169 (330)
T PF11707_consen 107 PKLLTPRKKEKEKDSESSKSK-PSIRTNFIRFWLSFLSSGD-----PELKRDLLSQKKLMSALFKGLRK 169 (330)
T ss_pred HHHhccccccccccccccccC-cCHHHHHHHHHHHHHccCC-----HHHHHHHHHcCchHHHHHhcccC
Confidence 22222111 00 000 1557788888777777664 23444443333 4445555554
Done!