Query psy8949
Match_columns 493
No_of_seqs 293 out of 450
Neff 5.6
Searched_HMMs 29240
Date Fri Aug 16 23:43:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8949.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8949hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bnx_A Diaphanous protein homo 100.0 2.8E-50 9.7E-55 419.8 21.9 278 47-466 23-305 (386)
2 3eg5_B Protein diaphanous homo 100.0 1E-47 3.5E-52 400.2 21.6 278 48-467 86-368 (383)
3 2f31_A Diaphanous protein homo 100.0 6.8E-45 2.3E-49 354.8 17.2 206 46-322 18-226 (233)
4 2f31_A Diaphanous protein homo 99.6 7.6E-15 2.6E-19 142.7 10.5 76 352-427 148-223 (233)
5 2bnx_A Diaphanous protein homo 99.5 1.2E-13 4E-18 143.9 13.8 76 352-427 152-227 (386)
6 3eg5_B Protein diaphanous homo 99.5 1.4E-13 4.9E-18 143.2 12.8 102 326-427 181-289 (383)
7 3dad_A FH1/FH2 domain-containi 99.3 4.7E-11 1.6E-15 121.9 17.9 153 167-320 177-332 (339)
8 4dvg_B Diaphanous protein; cyt 97.0 0.021 7.2E-07 54.5 16.1 145 165-313 129-286 (353)
9 3dad_A FH1/FH2 domain-containi 94.2 0.74 2.5E-05 47.0 14.4 72 356-427 256-331 (339)
10 3tpo_A Importin subunit alpha- 90.3 16 0.00055 38.1 19.2 216 169-421 270-486 (529)
11 3tpo_A Importin subunit alpha- 90.0 10 0.00036 39.5 17.4 182 169-380 312-493 (529)
12 3ul1_B Importin subunit alpha- 89.3 9.5 0.00032 39.8 16.4 216 168-421 250-467 (510)
13 3ul1_B Importin subunit alpha- 86.5 7.8 0.00027 40.5 13.6 182 169-380 293-474 (510)
14 4dvg_B Diaphanous protein; cyt 83.6 2.7 9.3E-05 40.1 7.5 61 364-425 230-293 (353)
15 4hxt_A De novo protein OR329; 83.5 25 0.00084 31.5 18.0 209 167-420 19-229 (252)
16 3grl_A General vesicular trans 83.2 10 0.00036 41.8 13.0 136 168-303 140-319 (651)
17 4db6_A Armadillo repeat protei 82.5 14 0.00049 32.6 11.8 125 168-312 72-197 (210)
18 2jdq_A Importin alpha-1 subuni 77.2 58 0.002 32.0 16.3 188 168-386 252-445 (450)
19 4db8_A Armadillo-repeat protei 76.9 43 0.0015 30.3 16.5 122 167-308 71-193 (252)
20 4hxt_A De novo protein OR329; 72.5 53 0.0018 29.3 16.8 122 167-308 61-183 (252)
21 4b8j_A Importin subunit alpha- 70.0 1E+02 0.0034 31.5 19.7 217 169-421 263-485 (528)
22 1jdh_A Beta-catenin; beta-cate 70.0 95 0.0033 31.2 20.0 208 191-422 265-520 (529)
23 4db8_A Armadillo-repeat protei 69.4 64 0.0022 29.0 20.3 121 162-303 24-146 (252)
24 2z6g_A B-catenin; FULL-length, 68.7 1.4E+02 0.0049 32.8 19.3 207 190-422 397-653 (780)
25 2ion_A PDCD4, programmed cell 61.9 22 0.00076 31.7 7.5 67 165-238 23-98 (152)
26 2nsz_A Programmed cell death p 61.0 25 0.00087 30.3 7.5 66 165-237 21-95 (129)
27 2jdq_A Importin alpha-1 subuni 59.1 1.4E+02 0.0047 29.2 17.3 115 169-302 211-325 (450)
28 2rg8_A Programmed cell death p 58.1 19 0.00065 32.6 6.4 65 165-237 24-96 (165)
29 1wa5_B Importin alpha subunit; 56.0 1.8E+02 0.0062 29.7 19.1 189 168-386 317-512 (530)
30 4db6_A Armadillo repeat protei 52.5 1.2E+02 0.004 26.4 17.8 119 165-303 27-146 (210)
31 3grl_A General vesicular trans 50.1 2.6E+02 0.009 30.7 14.9 189 185-385 115-343 (651)
32 4b8j_A Importin subunit alpha- 47.2 2.4E+02 0.0083 28.5 19.9 187 169-387 305-499 (528)
33 1wa5_B Importin alpha subunit; 44.7 2.7E+02 0.0092 28.3 21.0 217 169-420 276-498 (530)
34 2zu6_B Programmed cell death p 43.4 38 0.0013 33.7 6.5 67 165-238 180-255 (307)
35 3now_A UNC-45 protein, SD10334 34.5 1.7E+02 0.0057 33.1 10.5 119 168-304 641-759 (810)
36 3ldz_A STAM-1, signal transduc 30.3 89 0.003 27.2 6.0 71 167-237 59-133 (140)
37 2z6h_A Catenin beta-1, beta-ca 28.7 5.3E+02 0.018 27.0 19.9 222 169-421 282-516 (644)
38 1xm9_A Plakophilin 1; armadill 28.5 1.4E+02 0.0047 30.4 8.1 124 173-314 304-439 (457)
39 1ug3_A EIF4GI, eukaryotic prot 27.7 79 0.0027 31.4 5.9 64 166-237 26-98 (339)
40 2zu6_B Programmed cell death p 26.6 96 0.0033 30.8 6.2 65 165-237 17-89 (307)
41 4ffb_C Protein STU2; tubulin f 26.0 3.7E+02 0.013 24.9 10.1 93 165-276 70-168 (278)
42 3now_A UNC-45 protein, SD10334 21.7 3E+02 0.01 31.0 9.7 124 169-312 600-725 (810)
No 1
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=100.00 E-value=2.8e-50 Score=419.78 Aligned_cols=278 Identities=24% Similarity=0.360 Sum_probs=230.1
Q ss_pred hhhhccccccccCCChhHHHHHhcccccchHHHHHHHHHHHHHHhhhhhhcccCCCccccccCCCcccCCCCCCCCCCCC
Q psy8949 47 EETLNTSSEKCDKPPYRWVKEFLNDDNHGLDSLIEYLSFRLVMMRHEYRIADSKHLSEETLNTSSETENGLPASTNPPAN 126 (493)
Q Consensus 47 t~~L~~LeisLRTn~i~WV~eFln~~n~Gl~~L~eyL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (493)
+++|++|+|+||||+++||++|. ++|+++|+++|...+. ++. +. +
T Consensus 23 ~~~L~~L~v~Lrt~~~~Wv~~F~---~~Gl~~Ll~~L~~~~~----------~~~---------------------~~-~ 67 (386)
T 2bnx_A 23 LSCLESLRVSLNNNPVSWVQTFG---AEGLASLLDILKRLHD----------EKE---------------------ET-S 67 (386)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHH---HHHHHHHHHHHHHHHT----------CCT---------------------TT-C
T ss_pred HHHHHHHhHHHhcCCcHHHHHHH---HhHHHHHHHHHHHHHh----------ccc---------------------cc-c
Confidence 67899999999999999999995 5899999999987641 000 00 0
Q ss_pred CCCCCCCCCCCCccccccChhhhhhhhhhhhccCCCCCcchHHHHHHHHHHhcchhhHHHHhcchhhHHHHHHhhcCCCh
Q psy8949 127 VISPQSLGHQRPSLDLASSPSVKKRSRHAARLNMGDPKDDIHVCILCLRAIMNNKYGLNMVIKHTEAINSIALSLMHKSL 206 (493)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~~~~r~~~~~~~~~m~~~~dd~~~cI~CLkAIMN~~~Gl~~vl~~~~~i~~Ia~sL~s~~~ 206 (493)
. ....+.+|+||+|||||||+++|++.|+.||.++..|+.||+++++
T Consensus 68 -------------~--------------------~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~ 114 (386)
T 2bnx_A 68 -------------G--------------------NYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVP 114 (386)
T ss_dssp -------------C--------------------TTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSH
T ss_pred -------------c--------------------chhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCc
Confidence 0 0123678999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcccC--c-hHHHHHHHHhhHhhccCCcchHHHHhHhhccccccHHHHHHHHHHhhHHhcCCCChhh
Q psy8949 207 RTKALVLELLAAICLVTG--G-HEIILAAFDNFKEICQESKRFETLMDYFMNYEVFHIEFMVACMQFINIVVHSVEDMNF 283 (493)
Q Consensus 207 ~tr~lVlELLaalCl~~~--G-h~~VL~A~d~~k~~~~E~~RF~~Lv~~l~~~e~~~~ey~~a~m~fIN~lV~s~eDl~~ 283 (493)
+||++|+|+|+++|++++ | |+.||+||++++. ++|+.||++||+++++ ...++|+++||+|||+||++++|+++
T Consensus 115 ~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~-~~e~~RF~~lv~~l~~--~~~~e~~~a~m~lIN~lv~~~~dl~~ 191 (386)
T 2bnx_A 115 NMMIDAAKLLSALCILPQPEDMNERVLEAMTERAE-MDEVERFQPLLDGLKS--GTSIALKVGCLQLINALITPAEELDF 191 (386)
T ss_dssp HHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHH-HHTSCTTHHHHHHTST--TSCHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred hHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHH-hCchhhHHHHHHHHHc--CChHHHHHHHHHHHHHHHCCCCCHHH
Confidence 999999999999999986 9 9999999999987 5899999999999976 35899999999999999999999999
Q ss_pred HHHHHHHHHHCCChHHHHhhhhhhhhhhhhHHHhhhhhhhHH--HHHHHHHhhhhccccchhhhhhHHHHHhhchHHHHh
Q psy8949 284 RVHLQYEFSRLGLDSYLDKLRHTETLLLHCYLLCLYFYRVQV--ACMQFINIVVHSVEDMNFRVHLQYEFSRLGLDSYLD 361 (493)
Q Consensus 284 RVhLR~Ef~~lGL~~iL~kLr~~e~~~lq~qi~~~~~~e~~~--~~~~~~~al~~~~~d~d~r~~~r~~~~~~~~~~~v~ 361 (493)
|+|||+||.++||.+++++||..+++.++.|++.|+..+... ++.+. |..+--
T Consensus 192 R~~LR~Ef~~~GL~~il~~Lr~~~~~~L~~Qi~~fe~~~~eD~~el~~r-------------------------~~~i~~ 246 (386)
T 2bnx_A 192 RVHIRSELMRLGLHQVLQELREIENEDMKVQLCVFDEQGDEDFFDLKGR-------------------------LDDIRM 246 (386)
T ss_dssp HHHHHHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHH-------------------------HHHHHH
T ss_pred HHHHHHHHHHCChHHHHHHHhccCChhHHHHHHHHHHHHHHHHHHHHhh-------------------------hhcCCC
Confidence 999999999999999999999999999999999976644211 22111 111100
Q ss_pred hhhcccchhHHHHHHHhhhhhccCccccchhhhhHHHHhhcCchHHHhhhccCCcHHHHHhhhccCCCcchhhhhhhhcC
Q psy8949 362 KLRHTESEELQVACMQFINIVVHSVEDMNFRVHLQYEFSRLGLDSYLDKLRHTESEELQERVQAKDPPAHYLSKLRTYLD 441 (493)
Q Consensus 362 ~L~~~~n~~~~v~~m~fiN~li~~~~dl~~R~hLr~Ef~~lgl~~~l~~lr~~e~~~L~~ql~~fd~~~~~lSiLqhll~ 441 (493)
+ +.+|.++ ++.|..+++..++++||+|||||||.
T Consensus 247 d--------------------~~d~~~~--------------------------~~~l~~~~~~t~~~~~flSiLQhLLl 280 (386)
T 2bnx_A 247 E--------------------MDDFGEV--------------------------FQIILNTVKDSKAEPHFLSILQHLLL 280 (386)
T ss_dssp H--------------------CCCHHHH--------------------------HHHHHHHHTTSTHHHHHHHHHHHHTT
T ss_pred C--------------------CCCHHHH--------------------------HHHHHHHHcCCCchhHHHHHHHHHHh
Confidence 0 1122222 34556777788889999999999999
Q ss_pred CCCCCCchhHHHHHHHhhHhHHHhh
Q psy8949 442 PKASRSSRVQISAYLDNVFDVAALM 466 (493)
Q Consensus 442 ~~~~~~~~~~~w~~ld~~v~~a~ll 466 (493)
++.+.....++|.++|++|.+..+-
T Consensus 281 i~~d~~~~~~~~~Lid~~v~qivl~ 305 (386)
T 2bnx_A 281 VRNDYEARPQYYKLIEECVSQIVLH 305 (386)
T ss_dssp SCCCTTTHHHHHHHHHHHHHHHHTC
T ss_pred CCCcchhHHHHHHHHHHHHHHHHhc
Confidence 9987666689999999999999964
No 2
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=100.00 E-value=1e-47 Score=400.18 Aligned_cols=278 Identities=24% Similarity=0.370 Sum_probs=228.9
Q ss_pred hhhccccccccCCChhHHHHHhcccccchHHHHHHHHHHHHHHhhhhhhcccCCCccccccCCCcccCCCCCCCCCCCCC
Q psy8949 48 ETLNTSSEKCDKPPYRWVKEFLNDDNHGLDSLIEYLSFRLVMMRHEYRIADSKHLSEETLNTSSETENGLPASTNPPANV 127 (493)
Q Consensus 48 ~~L~~LeisLRTn~i~WV~eFln~~n~Gl~~L~eyL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (493)
+.|.+|+++|||++++||++|. ++|+++|++.|...+. .+. ..+
T Consensus 86 ~~L~sL~v~Lrt~~~sWV~~F~---~~Gl~~Ll~iL~~~~~----------~~~-------------------~~~---- 129 (383)
T 3eg5_B 86 SCLESLRVSLTSHPVSWVQTFG---AEGLASLLDILKRLHD----------EKE-------------------ETS---- 129 (383)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHH---HHHHHHHHHHHHHHHT----------CC---------------------------
T ss_pred HHHHHHHHHHhhCccHHHHHHH---HccHHHHHHHHHHHhh----------ccc-------------------ccc----
Confidence 4799999999999999999997 5799999999976541 000 000
Q ss_pred CCCCCCCCCCCccccccChhhhhhhhhhhhccCCCCCcchHHHHHHHHHHhcchhhHHHHhcchhhHHHHHHhhcCCChh
Q psy8949 128 ISPQSLGHQRPSLDLASSPSVKKRSRHAARLNMGDPKDDIHVCILCLRAIMNNKYGLNMVIKHTEAINSIALSLMHKSLR 207 (493)
Q Consensus 128 ~~~~~~~~~~~~l~~~~~~~~~r~~~~~~~~~m~~~~dd~~~cI~CLkAIMN~~~Gl~~vl~~~~~i~~Ia~sL~s~~~~ 207 (493)
. ....+.+|+||+|||||||+++|++.|++||.+|+.|+.||++++++
T Consensus 130 -----------------------~---------~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~ 177 (383)
T 3eg5_B 130 -----------------------G---------NYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPN 177 (383)
T ss_dssp -----------------------------------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHH
T ss_pred -----------------------c---------hhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCchH
Confidence 0 01235689999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccC---chHHHHHHHHhhHhhccCCcchHHHHhHhhccccccHHHHHHHHHHhhHHhcCCCChhhH
Q psy8949 208 TKALVLELLAAICLVTG---GHEIILAAFDNFKEICQESKRFETLMDYFMNYEVFHIEFMVACMQFINIVVHSVEDMNFR 284 (493)
Q Consensus 208 tr~lVlELLaalCl~~~---Gh~~VL~A~d~~k~~~~E~~RF~~Lv~~l~~~e~~~~ey~~a~m~fIN~lV~s~eDl~~R 284 (493)
||++|+|||+++|+|++ ||+.||+||++|+. ++|+.||++||+.+++. .+++|+++||+|||++|++++|+++|
T Consensus 178 ~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~-~~e~~RF~~lv~~L~~~--~~~e~~~~~m~lIN~li~~~~dl~~R 254 (383)
T 3eg5_B 178 MMIDAAKLLSALCILPQPEDMNERVLEAMTERAE-MDEVERFQPLLDGLKSG--TSIALKVGCLQLINALITPAEELDFR 254 (383)
T ss_dssp HHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHH-HHTSCTTHHHHHTTSTT--SCHHHHHHHHHHHHHHHTTCCCHHHH
T ss_pred HHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHH-hCCCCcHHHHHHHHHcc--CcHHHHHHHHHHHHHHHcCCCCHHHH
Confidence 99999999999999985 69999999999999 89999999999999864 58999999999999999999999999
Q ss_pred HHHHHHHHHCCChHHHHhhhhhhhhhhhhHHHhhhhhhhHH--HHHHHHHhhhhccccchhhhhhHHHHHhhchHHHHhh
Q psy8949 285 VHLQYEFSRLGLDSYLDKLRHTETLLLHCYLLCLYFYRVQV--ACMQFINIVVHSVEDMNFRVHLQYEFSRLGLDSYLDK 362 (493)
Q Consensus 285 VhLR~Ef~~lGL~~iL~kLr~~e~~~lq~qi~~~~~~e~~~--~~~~~~~al~~~~~d~d~r~~~r~~~~~~~~~~~v~~ 362 (493)
+|||+||.++||.+++++|+..++..++.|++.|+-.+... ++.+..+.+ +
T Consensus 255 ~~lR~ef~~~Gl~~il~~lr~~~~~~L~~Qi~~fe~~~~eD~~el~~r~~~~------------------~--------- 307 (383)
T 3eg5_B 255 VHIRSELMRLGLHQVLQELREIENEDMKVQLCVFDEQGDEDFFDLKGRLDDI------------------R--------- 307 (383)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------H---------
T ss_pred HHHHHHHHHCChHHHHHHHhcCCChhHHHHHHHHHHHHHHhHHHHHhhcccc------------------C---------
Confidence 99999999999999999999999999999999876543211 221111000 0
Q ss_pred hhcccchhHHHHHHHhhhhhccCccccchhhhhHHHHhhcCchHHHhhhccCCcHHHHHhhhccCCCcchhhhhhhhcCC
Q psy8949 363 LRHTESEELQVACMQFINIVVHSVEDMNFRVHLQYEFSRLGLDSYLDKLRHTESEELQERVQAKDPPAHYLSKLRTYLDP 442 (493)
Q Consensus 363 L~~~~n~~~~v~~m~fiN~li~~~~dl~~R~hLr~Ef~~lgl~~~l~~lr~~e~~~L~~ql~~fd~~~~~lSiLqhll~~ 442 (493)
+| +.+|.++ ++.|..+++.+++++||+|||||||.+
T Consensus 308 ----------------~d--~~d~~~~--------------------------~~~l~~~~~~t~a~~~flSiLQhLlli 343 (383)
T 3eg5_B 308 ----------------ME--MDDFGEV--------------------------FQIILNTVKDSKAEPHFLSILQHLLLV 343 (383)
T ss_dssp ----------------HH--CCSHHHH--------------------------HHHHHHHTTTSTTHHHHHHHHHHTTCS
T ss_pred ----------------cC--cCCHHHH--------------------------HHHHHHHhcCCcchHHHHHHHHHHHhc
Confidence 00 0112211 445677888889999999999999999
Q ss_pred CCCCCchhHHHHHHHhhHhHHHhhc
Q psy8949 443 KASRSSRVQISAYLDNVFDVAALME 467 (493)
Q Consensus 443 ~~~~~~~~~~w~~ld~~v~~a~lle 467 (493)
+.+...+.++|.++|++|.+..|-.
T Consensus 344 ~~d~~~~~~~~~Lid~~v~qivl~~ 368 (383)
T 3eg5_B 344 RNDYEARPQYYKLIEECVSQIVLHK 368 (383)
T ss_dssp CSSCTTHHHHHHHHHHHHHHHHCC-
T ss_pred cCCchhHHHHHHHHHHHHHHHHhcc
Confidence 8766667899999999999998543
No 3
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=100.00 E-value=6.8e-45 Score=354.77 Aligned_cols=206 Identities=28% Similarity=0.434 Sum_probs=184.1
Q ss_pred hhhhhccccccccCCChhHHHHHhcccccchHHHHHHHHHHHHHHhhhhhhcccCCCccccccCCCcccCCCCCCCCCCC
Q psy8949 46 SEETLNTSSEKCDKPPYRWVKEFLNDDNHGLDSLIEYLSFRLVMMRHEYRIADSKHLSEETLNTSSETENGLPASTNPPA 125 (493)
Q Consensus 46 st~~L~~LeisLRTn~i~WV~eFln~~n~Gl~~L~eyL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (493)
.++.|++|+|+||||+++||++|. ++|+++|+++|...+. ++. +.
T Consensus 18 ~~~~L~~L~v~Lrt~~~~Wv~~F~---~~Gl~~L~~~L~~~~~----------~~~---------------------~~- 62 (233)
T 2f31_A 18 LLSCLESLRVSLNNNPVSWVQTFG---AEGLASLLDILKRLHD----------EKE---------------------ET- 62 (233)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHH---HHHHHHHHHHHHHHHT----------CC-------------------------
T ss_pred HHHHHHHHhHhHhcCCcHHHHHHH---HhHHHHHHHHHHHHHh----------ccc---------------------cc-
Confidence 378999999999999999999993 6899999999987641 000 00
Q ss_pred CCCCCCCCCCCCCccccccChhhhhhhhhhhhccCCCCCcchHHHHHHHHHHhcchhhHHHHhcchhhHHHHHHhhcCCC
Q psy8949 126 NVISPQSLGHQRPSLDLASSPSVKKRSRHAARLNMGDPKDDIHVCILCLRAIMNNKYGLNMVIKHTEAINSIALSLMHKS 205 (493)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~~~~r~~~~~~~~~m~~~~dd~~~cI~CLkAIMN~~~Gl~~vl~~~~~i~~Ia~sL~s~~ 205 (493)
+ . ....+.+|+|++|||||||+++|++.+++||.+++.|+.||++++
T Consensus 63 ---~-----~-------------------------~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~ 109 (233)
T 2f31_A 63 ---S-----G-------------------------NYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAV 109 (233)
T ss_dssp -----------------------------------CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTS
T ss_pred ---c-----h-------------------------hhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCC
Confidence 0 0 012467899999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhcccC--c-hHHHHHHHHhhHhhccCCcchHHHHhHhhccccccHHHHHHHHHHhhHHhcCCCChh
Q psy8949 206 LRTKALVLELLAAICLVTG--G-HEIILAAFDNFKEICQESKRFETLMDYFMNYEVFHIEFMVACMQFINIVVHSVEDMN 282 (493)
Q Consensus 206 ~~tr~lVlELLaalCl~~~--G-h~~VL~A~d~~k~~~~E~~RF~~Lv~~l~~~e~~~~ey~~a~m~fIN~lV~s~eDl~ 282 (493)
++||++|+|+|+++|++++ | |++||+||++++. ++|+.||++||+.+++ +.+++|+++||+|||+||++++|++
T Consensus 110 ~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~-~~e~~RF~~lv~~l~~--~~~~e~~~~~m~lIN~li~~~~dl~ 186 (233)
T 2f31_A 110 PNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAE-MDEVERFQPLLDGLKS--GTSIALKVGCLQLINALITPAEELD 186 (233)
T ss_dssp HHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHH-HHTSCTTHHHHHTTST--TSCHHHHHHHHHHHHHHHTTCCCHH
T ss_pred chHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHH-hCCcchHHHHHHHHhc--CChHHHHHHHHHHHHHHHCCCCCHH
Confidence 9999999999999999986 9 9999999999987 6899999999999976 3589999999999999999999999
Q ss_pred hHHHHHHHHHHCCChHHHHhhhhhhhhhhhhHHHhhhhhh
Q psy8949 283 FRVHLQYEFSRLGLDSYLDKLRHTETLLLHCYLLCLYFYR 322 (493)
Q Consensus 283 ~RVhLR~Ef~~lGL~~iL~kLr~~e~~~lq~qi~~~~~~e 322 (493)
+|+|||+||.++||.+++++|+..+++.++.|++.|+.++
T Consensus 187 ~R~~lR~ef~~~Gl~~il~~l~~~~~~~L~~Qi~~fe~~~ 226 (233)
T 2f31_A 187 FRVHIRSELMRLGLHQVLQELREIENEDMKVQLCVFDEQG 226 (233)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCChHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999986654
No 4
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=99.56 E-value=7.6e-15 Score=142.70 Aligned_cols=76 Identities=34% Similarity=0.608 Sum_probs=72.9
Q ss_pred HhhchHHHHhhhhcccchhHHHHHHHhhhhhccCccccchhhhhHHHHhhcCchHHHhhhccCCcHHHHHhhhccC
Q psy8949 352 SRLGLDSYLDKLRHTESEELQVACMQFINIVVHSVEDMNFRVHLQYEFSRLGLDSYLDKLRHTESEELQERVQAKD 427 (493)
Q Consensus 352 ~~~~~~~~v~~L~~~~n~~~~v~~m~fiN~li~~~~dl~~R~hLr~Ef~~lgl~~~l~~lr~~e~~~L~~ql~~fd 427 (493)
++.||+++|++|++..+.+|+++||+|||++|++++|+++|+|||+||.++||.++++++|..++++|++|++.|+
T Consensus 148 e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~l~~~~~~~L~~Qi~~fe 223 (233)
T 2f31_A 148 EVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMKVQLCVFD 223 (233)
T ss_dssp TSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred CcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHhccCCHHHHHHHHHHH
Confidence 5578999999998888999999999999999999999999999999999999999999999999999999999886
No 5
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=99.50 E-value=1.2e-13 Score=143.94 Aligned_cols=76 Identities=34% Similarity=0.608 Sum_probs=73.2
Q ss_pred HhhchHHHHhhhhcccchhHHHHHHHhhhhhccCccccchhhhhHHHHhhcCchHHHhhhccCCcHHHHHhhhccC
Q psy8949 352 SRLGLDSYLDKLRHTESEELQVACMQFINIVVHSVEDMNFRVHLQYEFSRLGLDSYLDKLRHTESEELQERVQAKD 427 (493)
Q Consensus 352 ~~~~~~~~v~~L~~~~n~~~~v~~m~fiN~li~~~~dl~~R~hLr~Ef~~lgl~~~l~~lr~~e~~~L~~ql~~fd 427 (493)
++.||+++|+++++..+.+|+++||+|||++|++++|+++|+|||+||+++||.++++++|..++++|.+|++.|+
T Consensus 152 e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~~il~~Lr~~~~~~L~~Qi~~fe 227 (386)
T 2bnx_A 152 EVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMKVQLCVFD 227 (386)
T ss_dssp TSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHhccCChhHHHHHHHHH
Confidence 5578999999999889999999999999999999999999999999999999999999999999999999999996
No 6
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=99.48 E-value=1.4e-13 Score=143.20 Aligned_cols=102 Identities=25% Similarity=0.425 Sum_probs=84.2
Q ss_pred HHHHHHHhhhhcccc-------chhhhhhHHHHHhhchHHHHhhhhcccchhHHHHHHHhhhhhccCccccchhhhhHHH
Q psy8949 326 ACMQFINIVVHSVED-------MNFRVHLQYEFSRLGLDSYLDKLRHTESEELQVACMQFINIVVHSVEDMNFRVHLQYE 398 (493)
Q Consensus 326 ~~~~~~~al~~~~~d-------~d~r~~~r~~~~~~~~~~~v~~L~~~~n~~~~v~~m~fiN~li~~~~dl~~R~hLr~E 398 (493)
.+++++.+++...++ +++-.+.+..-++.||+++|++|++..+.+|+++||+|||++|++++|+++|+|||+|
T Consensus 181 ~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~e 260 (383)
T 3eg5_B 181 DAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSE 260 (383)
T ss_dssp HHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 455666666655431 1222222223355789999999998899999999999999999999999999999999
Q ss_pred HhhcCchHHHhhhccCCcHHHHHhhhccC
Q psy8949 399 FSRLGLDSYLDKLRHTESEELQERVQAKD 427 (493)
Q Consensus 399 f~~lgl~~~l~~lr~~e~~~L~~ql~~fd 427 (493)
|.++||.++++++|..++++|.+|++.|+
T Consensus 261 f~~~Gl~~il~~lr~~~~~~L~~Qi~~fe 289 (383)
T 3eg5_B 261 LMRLGLHQVLQELREIENEDMKVQLCVFD 289 (383)
T ss_dssp HHHTTHHHHHHHHTTSCCHHHHHHHHHHH
T ss_pred HHHCChHHHHHHHhcCCChhHHHHHHHHH
Confidence 99999999999999999999999999997
No 7
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=99.31 E-value=4.7e-11 Score=121.87 Aligned_cols=153 Identities=14% Similarity=0.151 Sum_probs=134.5
Q ss_pred hHHHHHHHHHHhcchhhHHHHhcchhhHHHHHHhhcCCChhHHHHHHHHHHHHhccc-CchHHHHHHHHhhHhhccCCcc
Q psy8949 167 IHVCILCLRAIMNNKYGLNMVIKHTEAINSIALSLMHKSLRTKALVLELLAAICLVT-GGHEIILAAFDNFKEICQESKR 245 (493)
Q Consensus 167 ~~~cI~CLkAIMN~~~Gl~~vl~~~~~i~~Ia~sL~s~~~~tr~lVlELLaalCl~~-~Gh~~VL~A~d~~k~~~~E~~R 245 (493)
+..+++++..||.+-+|.+.|++|+..|..|+.-+++....+-+.+++||-.+|.++ +|+..|.+|+.++... ....+
T Consensus 177 q~Y~L~AL~~LM~~v~Gm~gvvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~-~~~~p 255 (339)
T 3dad_A 177 QSYILRALGQLMLFVDGMLGVVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVAST-TGAPP 255 (339)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH-HCCCT
T ss_pred HHHHHHHHHHHHhccccccchhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhc-cCCCc
Confidence 467899999999999999999999999999999999988889999999999999997 5899999999988653 45677
Q ss_pred hHHHHhHhhccccccHHHHHHHHHHhhHHhcCCCChhhHHHHHHHHHHCCChHHHHh-hhhh-hhhhhhhHHHhhhh
Q psy8949 246 FETLMDYFMNYEVFHIEFMVACMQFINIVVHSVEDMNFRVHLQYEFSRLGLDSYLDK-LRHT-ETLLLHCYLLCLYF 320 (493)
Q Consensus 246 F~~Lv~~l~~~e~~~~ey~~a~m~fIN~lV~s~eDl~~RVhLR~Ef~~lGL~~iL~k-Lr~~-e~~~lq~qi~~~~~ 320 (493)
|+.+|.-+...++.+.+.++.+|.+||+++..++|-+.|-.+...+...|+..++.+ |+.. .++.++.|+..|+-
T Consensus 256 ~~~Lv~~L~~~~~~D~elq~~amtLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Ql~iyE~ 332 (339)
T 3dad_A 256 WANLVSILEEKNGADPELLVYTVTLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQLVLYEN 332 (339)
T ss_dssp THHHHHHHTTTTSCCHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 999999998555678999999999999999999998888999999999999998888 5554 56778888877654
No 8
>4dvg_B Diaphanous protein; cytoskeleton, armadillo repeat, GTPase-binding domain, nucle binding, signaling protein, lipoprotein; HET: GSP; 2.60A {Entamoeba histolytica}
Probab=97.04 E-value=0.021 Score=54.49 Aligned_cols=145 Identities=20% Similarity=0.364 Sum_probs=109.4
Q ss_pred cchHHHHHHHHHHhcchhhHHHHhcchhhHHHHHHhhcCCChhHHHHHHHHHHHHh----cc--c-------CchHHHHH
Q psy8949 165 DDIHVCILCLRAIMNNKYGLNMVIKHTEAINSIALSLMHKSLRTKALVLELLAAIC----LV--T-------GGHEIILA 231 (493)
Q Consensus 165 dd~~~cI~CLkAIMN~~~Gl~~vl~~~~~i~~Ia~sL~s~~~~tr~lVlELLaalC----l~--~-------~Gh~~VL~ 231 (493)
|.+-.|-..||-+.-....--.+++-..++..+...++|+.+.--.+ +++|--+. .+ | ||.--|+.
T Consensus 129 deerkccevlryvfaeedatvalieidggvelllkgmnskritpdnq-ldilleitltssmvehpsqeglylggdvcvmn 207 (353)
T 4dvg_B 129 DEERKCCEVLRYVFAEEDATVALIEIDGGVELLLKGMNSKRITPDNQ-LDILLEITLTSSMVEHPSQEGLYLGGDVCVMN 207 (353)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHTSTTHHHHHHHHHTCTTSCHHHH-HHHHHHHHHHHHCSBCTTSTTCBCCHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcccceEEEEEecccHHHHhcccccCcCCCccc-cceeeeEeehhhhhcCccccceeecCceeeeh
Confidence 55567777788777766666667777778888899999887754433 23332222 22 1 57778999
Q ss_pred HHHhhHhhccCCcchHHHHhHhhccccccHHHHHHHHHHhhHHhcCCCChhhHHHHHHHHHHCCChHHHHhhhhhhhhhh
Q psy8949 232 AFDNFKEICQESKRFETLMDYFMNYEVFHIEFMVACMQFINIVVHSVEDMNFRVHLQYEFSRLGLDSYLDKLRHTETLLL 311 (493)
Q Consensus 232 A~d~~k~~~~E~~RF~~Lv~~l~~~e~~~~ey~~a~m~fIN~lV~s~eDl~~RVhLR~Ef~~lGL~~iL~kLr~~e~~~l 311 (493)
||.++-..--+...|-.....|.. +..-.|+-|.+.+||-++..| ++.-|+..|+-|...||..-|+.+++++=-.+
T Consensus 208 afsnlvsegvdmkkflsffslfsk--sksekfkhaslvlinnlidqp-elehrmdvrnsfieiglvnelenmkntewmki 284 (353)
T 4dvg_B 208 AFSNLVSEGVDMKKFLSFFSLFSK--SKSEKFKHASLVLINNLIDQP-ELEHRMDVRNSFIEIGLVNELENMKNTEWMKI 284 (353)
T ss_dssp HHHHHHHTTSCSSTTHHHHHHHHH--CCCHHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHTTTHHHHHHHHHTSGGGGS
T ss_pred hhHHHHhccccHHHHHHHHHHHhh--hhhhhcccceeehhhccccch-hhHhhhhhhhhheeeehhhHhhhccCccceeh
Confidence 999997765567778777776654 235678999999999999985 59999999999999999999999999986555
Q ss_pred hh
Q psy8949 312 HC 313 (493)
Q Consensus 312 q~ 313 (493)
++
T Consensus 285 dk 286 (353)
T 4dvg_B 285 DK 286 (353)
T ss_dssp HH
T ss_pred hh
Confidence 54
No 9
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=94.25 E-value=0.74 Score=47.00 Aligned_cols=72 Identities=14% Similarity=0.252 Sum_probs=61.3
Q ss_pred hHHHHhhhh--cccchhHHHHHHHhhhhhccCccccchhhhhHHHHhhcCchHHHhh-hccC-CcHHHHHhhhccC
Q psy8949 356 LDSYLDKLR--HTESEELQVACMQFINIVVHSVEDMNFRVHLQYEFSRLGLDSYLDK-LRHT-ESEELQERVQAKD 427 (493)
Q Consensus 356 ~~~~v~~L~--~~~n~~~~v~~m~fiN~li~~~~dl~~R~hLr~Ef~~lgl~~~l~~-lr~~-e~~~L~~ql~~fd 427 (493)
++.+|.-|+ ..-+.++++..|+.||+++.+.+|=+.|-++..++-.+|+..++.+ +... .+.+|..|+..++
T Consensus 256 ~~~Lv~~L~~~~~~D~elq~~amtLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Ql~iyE 331 (339)
T 3dad_A 256 WANLVSILEEKNGADPELLVYTVTLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQLVLYE 331 (339)
T ss_dssp THHHHHHHTTTTSCCHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 778888885 3467899999999999999999888878899999999999998887 5554 5889999997654
No 10
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=90.29 E-value=16 Score=38.09 Aligned_cols=216 Identities=11% Similarity=0.079 Sum_probs=117.5
Q ss_pred HHHHHHHHHhcchhhHHHHhcchhhHHHHHHhhcCCChhHHHHHHHHHHHHhcccCchHHHHHHHHhhHhhccCCcchHH
Q psy8949 169 VCILCLRAIMNNKYGLNMVIKHTEAINSIALSLMHKSLRTKALVLELLAAICLVTGGHEIILAAFDNFKEICQESKRFET 248 (493)
Q Consensus 169 ~cI~CLkAIMN~~~Gl~~vl~~~~~i~~Ia~sL~s~~~~tr~lVlELLaalCl~~~Gh~~VL~A~d~~k~~~~E~~RF~~ 248 (493)
.+..||..+..........+....++..+...|.+++..++.-++..|..++...+... .++- +.+-...
T Consensus 270 ~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~---~~i~-------~~g~l~~ 339 (529)
T 3tpo_A 270 DSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQT---QKVI-------DAGALAV 339 (529)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHH---HHHH-------HTTGGGG
T ss_pred HHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHH---HHHh-------hcccHHH
Confidence 35556666655544444555566788889999999999999999999988876432221 1111 1122445
Q ss_pred HHhHhhccccccHHHHHHHHHHhhHHhcCCCChhhHHHHHHHHHHCCChHHHHhhhhhhhhhhhhHHHhhhhhhhHHHHH
Q psy8949 249 LMDYFMNYEVFHIEFMVACMQFINIVVHSVEDMNFRVHLQYEFSRLGLDSYLDKLRHTETLLLHCYLLCLYFYRVQVACM 328 (493)
Q Consensus 249 Lv~~l~~~e~~~~ey~~a~m~fIN~lV~s~eDl~~RVhLR~Ef~~lGL~~iL~kLr~~e~~~lq~qi~~~~~~e~~~~~~ 328 (493)
++..+.++. ..+ -.-+|..+-|..-++++ .+..+...|+.+.|-.+-...+..+++. ++.
T Consensus 340 L~~LL~~~~-~~i-~~~a~~aL~nl~~~~~~-------~~~~v~~~g~i~~Lv~lL~~~~~~v~~~-----------A~~ 399 (529)
T 3tpo_A 340 FPSLLTNPK-TNI-QKEATWTMSNITAGRQD-------QIQQVVNHGLVPFLVGVLSKADFKTQKA-----------AAW 399 (529)
T ss_dssp HHHHTTCSS-HHH-HHHHHHHHHHHHTSCHH-------HHHHHHHTTHHHHHHHHHHSSCHHHHHH-----------HHH
T ss_pred HHHHHcCCC-HHH-HHHHHHHHHHHhcccHH-------HHHHHHhcCcHHHHHHHhcCCCHHHHHH-----------HHH
Confidence 666666532 122 13466666675444322 2344556787776665544444444331 222
Q ss_pred HHHHhhhhccccchhhhhhHHHHHhh-chHHHHhhhhcccchhHHHHHHHhhhhhccCccccchhhhhHHHHhhcCchHH
Q psy8949 329 QFINIVVHSVEDMNFRVHLQYEFSRL-GLDSYLDKLRHTESEELQVACMQFINIVVHSVEDMNFRVHLQYEFSRLGLDSY 407 (493)
Q Consensus 329 ~~~~al~~~~~d~d~r~~~r~~~~~~-~~~~~v~~L~~~~n~~~~v~~m~fiN~li~~~~dl~~R~hLr~Ef~~lgl~~~ 407 (493)
-+.|.... .. ..+...+... +...+++=|++.++ +....++..+.-++..++.+.---.++.-|-.+|..+.
T Consensus 400 aL~nl~~~-~~-----~~~~~~l~~~g~i~~L~~LL~~~d~-~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ 472 (529)
T 3tpo_A 400 AITNYTSG-GT-----VEQIVYLVHCGIIEPLMNLLSAKDT-KIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDK 472 (529)
T ss_dssp HHHHHHHH-SC-----HHHHHHHHHTTCHHHHHHGGGCSCH-HHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcC-CC-----HHHHHHHHHCcCHHHHHHHhcCCCH-HHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHH
Confidence 22222111 10 0111112222 34566666665544 44444444444444444433333344556778899999
Q ss_pred HhhhccCCcHHHHH
Q psy8949 408 LDKLRHTESEELQE 421 (493)
Q Consensus 408 l~~lr~~e~~~L~~ 421 (493)
|+.|-.++++++..
T Consensus 473 ie~Lq~~~n~~i~~ 486 (529)
T 3tpo_A 473 IEALQRHENESVYK 486 (529)
T ss_dssp HTGGGGCSSHHHHH
T ss_pred HHHHHcCCCHHHHH
Confidence 99999988888754
No 11
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=90.00 E-value=10 Score=39.53 Aligned_cols=182 Identities=12% Similarity=0.068 Sum_probs=98.9
Q ss_pred HHHHHHHHHhcchhhHHHHhcchhhHHHHHHhhcCCChhHHHHHHHHHHHHhcccCchHHHHHHHHhhHhhccCCcchHH
Q psy8949 169 VCILCLRAIMNNKYGLNMVIKHTEAINSIALSLMHKSLRTKALVLELLAAICLVTGGHEIILAAFDNFKEICQESKRFET 248 (493)
Q Consensus 169 ~cI~CLkAIMN~~~Gl~~vl~~~~~i~~Ia~sL~s~~~~tr~lVlELLaalCl~~~Gh~~VL~A~d~~k~~~~E~~RF~~ 248 (493)
.+++||..|.-........+-+..++..+...|.+++..+|+.++-.|+.+|.... ....++-. .+-+.+
T Consensus 312 ~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~---~~~~~v~~-------~g~i~~ 381 (529)
T 3tpo_A 312 PALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQ---DQIQQVVN-------HGLVPF 381 (529)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCH---HHHHHHHH-------TTHHHH
T ss_pred HHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccH---HHHHHHHh-------cCcHHH
Confidence 34555555543222333444455678888888899999999999999999886432 11122211 123456
Q ss_pred HHhHhhccccccHHHHHHHHHHhhHHhcCCCChhhHHHHHHHHHHCCChHHHHhhhhhhhhhhhhHHHhhhhhhhHHHHH
Q psy8949 249 LMDYFMNYEVFHIEFMVACMQFINIVVHSVEDMNFRVHLQYEFSRLGLDSYLDKLRHTETLLLHCYLLCLYFYRVQVACM 328 (493)
Q Consensus 249 Lv~~l~~~e~~~~ey~~a~m~fIN~lV~s~eDl~~RVhLR~Ef~~lGL~~iL~kLr~~e~~~lq~qi~~~~~~e~~~~~~ 328 (493)
++..+.+.+ ..+ -..|+..+.|...++.. +. ...+...|..+.|-.|-...+..+. ..++
T Consensus 382 Lv~lL~~~~-~~v-~~~A~~aL~nl~~~~~~--~~----~~~l~~~g~i~~L~~LL~~~d~~i~------------~~~L 441 (529)
T 3tpo_A 382 LVGVLSKAD-FKT-QKAAAWAITNYTSGGTV--EQ----IVYLVHCGIIEPLMNLLSAKDTKII------------QVIL 441 (529)
T ss_dssp HHHHHHSSC-HHH-HHHHHHHHHHHHHHSCH--HH----HHHHHHTTCHHHHHHGGGCSCHHHH------------HHHH
T ss_pred HHHHhcCCC-HHH-HHHHHHHHHHHHcCCCH--HH----HHHHHHCcCHHHHHHHhcCCCHHHH------------HHHH
Confidence 777776542 222 13455566775554432 21 2235677866666555443332221 1223
Q ss_pred HHHHhhhhccccchhhhhhHHHHHhhchHHHHhhhhcccchhHHHHHHHhhh
Q psy8949 329 QFINIVVHSVEDMNFRVHLQYEFSRLGLDSYLDKLRHTESEELQVACMQFIN 380 (493)
Q Consensus 329 ~~~~al~~~~~d~d~r~~~r~~~~~~~~~~~v~~L~~~~n~~~~v~~m~fiN 380 (493)
+-+..+....+.....-..+.-+...|.-+.++.|.+++|.+........|.
T Consensus 442 ~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie 493 (529)
T 3tpo_A 442 DAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIE 493 (529)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3333344333322221111222455666677889988888887776666665
No 12
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=89.27 E-value=9.5 Score=39.79 Aligned_cols=216 Identities=11% Similarity=0.078 Sum_probs=118.2
Q ss_pred HHHHHHHHHHhcchhhHHHHhcchhhHHHHHHhhcCCChhHHHHHHHHHHHHhcccCchH-HHHHHHHhhHhhccCCcch
Q psy8949 168 HVCILCLRAIMNNKYGLNMVIKHTEAINSIALSLMHKSLRTKALVLELLAAICLVTGGHE-IILAAFDNFKEICQESKRF 246 (493)
Q Consensus 168 ~~cI~CLkAIMN~~~Gl~~vl~~~~~i~~Ia~sL~s~~~~tr~lVlELLaalCl~~~Gh~-~VL~A~d~~k~~~~E~~RF 246 (493)
..+..||..+..........+....++..+...|.+++..++.-++..|..++...+... .+++ .+-.
T Consensus 250 ~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~-----------~g~l 318 (510)
T 3ul1_B 250 ADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVID-----------AGAL 318 (510)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH-----------TTGG
T ss_pred HHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhh-----------ccch
Confidence 346667777765554444555566788899999999999999999999998886543221 2221 1112
Q ss_pred HHHHhHhhccccccHHHHHHHHHHhhHHhcCCCChhhHHHHHHHHHHCCChHHHHhhhhhhhhhhhhHHHhhhhhhhHHH
Q psy8949 247 ETLMDYFMNYEVFHIEFMVACMQFINIVVHSVEDMNFRVHLQYEFSRLGLDSYLDKLRHTETLLLHCYLLCLYFYRVQVA 326 (493)
Q Consensus 247 ~~Lv~~l~~~e~~~~ey~~a~m~fIN~lV~s~eDl~~RVhLR~Ef~~lGL~~iL~kLr~~e~~~lq~qi~~~~~~e~~~~ 326 (493)
..++..+.++. ..+ -..+|..+-|..-++++ .+..+...|+.+.|-.+-...+..+++. +
T Consensus 319 ~~L~~LL~~~~-~~v-~~~A~~aL~nl~a~~~~-------~~~~v~~~g~i~~Lv~lL~~~~~~v~~~-----------A 378 (510)
T 3ul1_B 319 AVFPSLLTNPK-TNI-QKEATWTMSNITAGRQD-------QIQQVVNHGLVPFLVGVLSKADFKTQKE-----------A 378 (510)
T ss_dssp GGCC-CTTCSS-HHH-HHHHHHHHHHHTTSCHH-------HHHHHHHTTHHHHHHHHHHSSCHHHHHH-----------H
T ss_pred HHHHHHhcCCC-HHH-HHHHHHHHHHHHcCcHH-------HHHHHHhcCCHHHHHHHHcCCCHHHHHH-----------H
Confidence 33344444432 111 24566666774433322 2344556777666655544444444431 2
Q ss_pred HHHHHHhhhhccccchhhhhhHHHHHh-hchHHHHhhhhcccchhHHHHHHHhhhhhccCccccchhhhhHHHHhhcCch
Q psy8949 327 CMQFINIVVHSVEDMNFRVHLQYEFSR-LGLDSYLDKLRHTESEELQVACMQFINIVVHSVEDMNFRVHLQYEFSRLGLD 405 (493)
Q Consensus 327 ~~~~~~al~~~~~d~d~r~~~r~~~~~-~~~~~~v~~L~~~~n~~~~v~~m~fiN~li~~~~dl~~R~hLr~Ef~~lgl~ 405 (493)
+.-+.|.... . ...++..+.. -..+.+++=|++.+ .+....++..+.-++...+.+.-.-.++.-|-.+|..
T Consensus 379 a~aL~Nl~~~-~-----~~~~~~~L~~~g~i~~L~~LL~~~d-~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl 451 (510)
T 3ul1_B 379 AWAITNYTSG-G-----TVEQIVYLVHCGIIEPLMNLLSAKD-TKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGL 451 (510)
T ss_dssp HHHHHHHHHH-C-----CHHHHHHHHHTTCHHHHHHGGGCSC-HHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHH
T ss_pred HHHHHHHHcc-C-----CHHHHHHHHHCCCHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcH
Confidence 2112221111 1 0111112222 23456666566544 4454455544444555444444344556667788999
Q ss_pred HHHhhhccCCcHHHHH
Q psy8949 406 SYLDKLRHTESEELQE 421 (493)
Q Consensus 406 ~~l~~lr~~e~~~L~~ 421 (493)
+.|+.|-.++++++..
T Consensus 452 ~~ie~Lq~~~n~~i~~ 467 (510)
T 3ul1_B 452 DKIEALQRHENESVYK 467 (510)
T ss_dssp HHHHHGGGCSSHHHHH
T ss_pred HHHHHHHcCCCHHHHH
Confidence 9999999888888753
No 13
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=86.46 E-value=7.8 Score=40.46 Aligned_cols=182 Identities=11% Similarity=0.068 Sum_probs=96.9
Q ss_pred HHHHHHHHHhcchhhHHHHhcchhhHHHHHHhhcCCChhHHHHHHHHHHHHhcccCchHHHHHHHHhhHhhccCCcchHH
Q psy8949 169 VCILCLRAIMNNKYGLNMVIKHTEAINSIALSLMHKSLRTKALVLELLAAICLVTGGHEIILAAFDNFKEICQESKRFET 248 (493)
Q Consensus 169 ~cI~CLkAIMN~~~Gl~~vl~~~~~i~~Ia~sL~s~~~~tr~lVlELLaalCl~~~Gh~~VL~A~d~~k~~~~E~~RF~~ 248 (493)
.+++||..|.-........+-+..++..+...|.+++..+|+.++-.|+.+|.....+. .++- +.+-+..
T Consensus 293 ~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~---~~v~-------~~g~i~~ 362 (510)
T 3ul1_B 293 PALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQI---QQVV-------NHGLVPF 362 (510)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHH---HHHH-------HTTHHHH
T ss_pred HHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHH---HHHH-------hcCCHHH
Confidence 34444444433222233333445567777777889999999999999999886432111 1111 1123456
Q ss_pred HHhHhhccccccHHHHHHHHHHhhHHhcCCCChhhHHHHHHHHHHCCChHHHHhhhhhhhhhhhhHHHhhhhhhhHHHHH
Q psy8949 249 LMDYFMNYEVFHIEFMVACMQFINIVVHSVEDMNFRVHLQYEFSRLGLDSYLDKLRHTETLLLHCYLLCLYFYRVQVACM 328 (493)
Q Consensus 249 Lv~~l~~~e~~~~ey~~a~m~fIN~lV~s~eDl~~RVhLR~Ef~~lGL~~iL~kLr~~e~~~lq~qi~~~~~~e~~~~~~ 328 (493)
++..+.+.+ ..+ -.-|+..+.|...++. .+. +..+...|..+.|-.|=...+..+. ..++
T Consensus 363 Lv~lL~~~~-~~v-~~~Aa~aL~Nl~~~~~--~~~----~~~L~~~g~i~~L~~LL~~~d~~i~------------~~~L 422 (510)
T 3ul1_B 363 LVGVLSKAD-FKT-QKEAAWAITNYTSGGT--VEQ----IVYLVHCGIIEPLMNLLSAKDTKII------------QVIL 422 (510)
T ss_dssp HHHHHHSSC-HHH-HHHHHHHHHHHHHHCC--HHH----HHHHHHTTCHHHHHHGGGCSCHHHH------------HHHH
T ss_pred HHHHHcCCC-HHH-HHHHHHHHHHHHccCC--HHH----HHHHHHCCCHHHHHHHhcCCCHHHH------------HHHH
Confidence 777776542 222 1345556677555432 222 2335677866666555443332221 1223
Q ss_pred HHHHhhhhccccchhhhhhHHHHHhhchHHHHhhhhcccchhHHHHHHHhhh
Q psy8949 329 QFINIVVHSVEDMNFRVHLQYEFSRLGLDSYLDKLRHTESEELQVACMQFIN 380 (493)
Q Consensus 329 ~~~~al~~~~~d~d~r~~~r~~~~~~~~~~~v~~L~~~~n~~~~v~~m~fiN 380 (493)
+-+.-+....+.+...-..+.-+...|.-+.++.|++.+|.+........|+
T Consensus 423 ~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie 474 (510)
T 3ul1_B 423 DAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIE 474 (510)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3333333333322222122223555677778899988888887777776666
No 14
>4dvg_B Diaphanous protein; cytoskeleton, armadillo repeat, GTPase-binding domain, nucle binding, signaling protein, lipoprotein; HET: GSP; 2.60A {Entamoeba histolytica}
Probab=83.59 E-value=2.7 Score=40.08 Aligned_cols=61 Identities=21% Similarity=0.488 Sum_probs=50.3
Q ss_pred hcccchhHHHHHHHhhhhhccCccccchhhhhHHHHhhcCchHHHhhhccCC---cHHHHHhhhc
Q psy8949 364 RHTESEELQVACMQFINIVVHSVEDMNFRVHLQYEFSRLGLDSYLDKLRHTE---SEELQERVQA 425 (493)
Q Consensus 364 ~~~~n~~~~v~~m~fiN~li~~~~dl~~R~hLr~Ef~~lgl~~~l~~lr~~e---~~~L~~ql~~ 425 (493)
..+.+..++.+-+.+||-+|..|+ ++-|...|+-|+..||-.-|+.++.+| -+.+...+++
T Consensus 230 sksksekfkhaslvlinnlidqpe-lehrmdvrnsfieiglvnelenmkntewmkidkikdsind 293 (353)
T 4dvg_B 230 SKSKSEKFKHASLVLINNLIDQPE-LEHRMDVRNSFIEIGLVNELENMKNTEWMKIDKIKDSIND 293 (353)
T ss_dssp HHCCCHHHHHHHHHHHHHHHCCSS-HHHHHHHHHHHHTTTHHHHHHHHHTSGGGGSHHHHHHHHH
T ss_pred hhhhhhhcccceeehhhccccchh-hHhhhhhhhhheeeehhhHhhhccCccceehhhHHhhHHH
Confidence 346788999999999999998875 889999999999999999999999885 3444444443
No 15
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=83.45 E-value=25 Score=31.52 Aligned_cols=209 Identities=12% Similarity=0.077 Sum_probs=110.7
Q ss_pred hHHHHHHHHHHhcchhhHHHHhcchhhHHHHHHhhcCCChhHHHHHHHHHHHHhccc-CchHHHHHHHHhhHhhccCCcc
Q psy8949 167 IHVCILCLRAIMNNKYGLNMVIKHTEAINSIALSLMHKSLRTKALVLELLAAICLVT-GGHEIILAAFDNFKEICQESKR 245 (493)
Q Consensus 167 ~~~cI~CLkAIMN~~~Gl~~vl~~~~~i~~Ia~sL~s~~~~tr~lVlELLaalCl~~-~Gh~~VL~A~d~~k~~~~E~~R 245 (493)
...++.||..+..........+-...++..+...|.+++..++..++..|..+|... .....+.+ .+-
T Consensus 19 ~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-----------~~~ 87 (252)
T 4hxt_A 19 QKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVD-----------AGG 87 (252)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH-----------TTH
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHH-----------CCC
Confidence 456777888776554433344445578999999999999999999999999999752 23333321 122
Q ss_pred hHHHHhHhhccccccHHHHHHHHHHhhHHhcCCCChhhHHHHHHHHHHCCChHHHHhhhhhhhhhhhhHHHhhhhhhhHH
Q psy8949 246 FETLMDYFMNYEVFHIEFMVACMQFINIVVHSVEDMNFRVHLQYEFSRLGLDSYLDKLRHTETLLLHCYLLCLYFYRVQV 325 (493)
Q Consensus 246 F~~Lv~~l~~~e~~~~ey~~a~m~fIN~lV~s~eDl~~RVhLR~Ef~~lGL~~iL~kLr~~e~~~lq~qi~~~~~~e~~~ 325 (493)
...++..+.+. +.+.+..++..+..+....++ .+..+...|..+.|-++-...+..+ +.
T Consensus 88 i~~l~~ll~~~---~~~v~~~a~~~L~~l~~~~~~------~~~~~~~~~~i~~L~~~l~~~~~~~------------~~ 146 (252)
T 4hxt_A 88 VEVLVKLLTST---DSEVQKEAARALANIASGPDE------AIKAIVDAGGVEVLVKLLTSTDSEV------------QK 146 (252)
T ss_dssp HHHHHHHTTCS---SHHHHHHHHHHHHHHTTSCHH------HHHHHHHTTHHHHHHHHTTCSCHHH------------HH
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHHHHcCCHH------HHHHHHHCCCHHHHHHHHcCCCHHH------------HH
Confidence 44566666642 345565666655556643332 3445566675554444433322222 22
Q ss_pred HHHHHHHhhhhccccchhhhhhHHHHHhh-chHHHHhhhhcccchhHHHHHHHhhhhhccCccccchhhhhHHHHhhcCc
Q psy8949 326 ACMQFINIVVHSVEDMNFRVHLQYEFSRL-GLDSYLDKLRHTESEELQVACMQFINIVVHSVEDMNFRVHLQYEFSRLGL 404 (493)
Q Consensus 326 ~~~~~~~al~~~~~d~d~r~~~r~~~~~~-~~~~~v~~L~~~~n~~~~v~~m~fiN~li~~~~dl~~R~hLr~Ef~~lgl 404 (493)
.+...+..+....++ . +..+... .+..+++-|++ .+.+.+..++..+-.+..+.+ ..+..+...|.
T Consensus 147 ~a~~~L~~l~~~~~~---~---~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~------~~~~~l~~~~~ 213 (252)
T 4hxt_A 147 EAARALANIASGPDE---A---IKAIVDAGGVEVLVKLLTS-TDSEVQKEAARALANIASGPT------SAIKAIVDAGG 213 (252)
T ss_dssp HHHHHHHHHTTSCHH---H---HHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHTTSBH------HHHHHHHHTTH
T ss_pred HHHHHHHHHHcCCHH---H---HHHHHHCcCHHHHHHHHCC-CCHHHHHHHHHHHHHHHcCCH------HHHHHHHHCCC
Confidence 333333444332111 1 0111111 23445555554 444555555555544444322 23445556677
Q ss_pred hHHHhhhccCCcHHHH
Q psy8949 405 DSYLDKLRHTESEELQ 420 (493)
Q Consensus 405 ~~~l~~lr~~e~~~L~ 420 (493)
.+.|-++=...++++.
T Consensus 214 i~~L~~ll~~~~~~v~ 229 (252)
T 4hxt_A 214 VEVLQKLLTSTDSEVQ 229 (252)
T ss_dssp HHHHHHGGGCSCHHHH
T ss_pred HHHHHHHHCCCcHHHH
Confidence 6666555445555544
No 16
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=83.22 E-value=10 Score=41.79 Aligned_cols=136 Identities=12% Similarity=0.132 Sum_probs=89.0
Q ss_pred HHHHHHHHHHhcchhh-H-HHHhcchhhHHHHHHhhcCCChhHHHHHHHHHHHHhccc----------CchHHHHHH---
Q psy8949 168 HVCILCLRAIMNNKYG-L-NMVIKHTEAINSIALSLMHKSLRTKALVLELLAAICLVT----------GGHEIILAA--- 232 (493)
Q Consensus 168 ~~cI~CLkAIMN~~~G-l-~~vl~~~~~i~~Ia~sL~s~~~~tr~lVlELLaalCl~~----------~Gh~~VL~A--- 232 (493)
...++||.+|..++.. . +.|+..|.+|..+...|..++-..|..++-+|+.++--. |++++..+-
T Consensus 140 ~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~ 219 (651)
T 3grl_A 140 WPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITE 219 (651)
T ss_dssp HHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHh
Confidence 4679999999866654 3 467789999999999999999999999999998887532 233322211
Q ss_pred ----------------HHhh-------HhhccCCcchHHHHhHhhccccc------cHHHHHHHHHHhhHHhcCCCChhh
Q psy8949 233 ----------------FDNF-------KEICQESKRFETLMDYFMNYEVF------HIEFMVACMQFINIVVHSVEDMNF 283 (493)
Q Consensus 233 ----------------~d~~-------k~~~~E~~RF~~Lv~~l~~~e~~------~~ey~~a~m~fIN~lV~s~eDl~~ 283 (493)
+.++ +....|..-...|...+...+.. -+.=+...+..|..+|.....++.
T Consensus 220 Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~ 299 (651)
T 3grl_A 220 EGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGA 299 (651)
T ss_dssp HTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHH
T ss_pred cCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 1111 12334555555555555432211 223345678889988887666655
Q ss_pred HHHHHHHHHHCCChHHHHhh
Q psy8949 284 RVHLQYEFSRLGLDSYLDKL 303 (493)
Q Consensus 284 RVhLR~Ef~~lGL~~iL~kL 303 (493)
...=|+.|...|+.+.+=++
T Consensus 300 t~~nQ~~~~~~g~l~~Ll~l 319 (651)
T 3grl_A 300 TSSCQKAMFQCGLLQQLCTI 319 (651)
T ss_dssp HHHHHHHHHHTTHHHHHHHH
T ss_pred CHHHHHHHHHCCCHHHHHHH
Confidence 55668889999976655444
No 17
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=82.53 E-value=14 Score=32.55 Aligned_cols=125 Identities=11% Similarity=0.111 Sum_probs=76.9
Q ss_pred HHHHHHHHHHh-cchhhHHHHhcchhhHHHHHHhhcCCChhHHHHHHHHHHHHhcccCchHHHHHHHHhhHhhccCCcch
Q psy8949 168 HVCILCLRAIM-NNKYGLNMVIKHTEAINSIALSLMHKSLRTKALVLELLAAICLVTGGHEIILAAFDNFKEICQESKRF 246 (493)
Q Consensus 168 ~~cI~CLkAIM-N~~~Gl~~vl~~~~~i~~Ia~sL~s~~~~tr~lVlELLaalCl~~~Gh~~VL~A~d~~k~~~~E~~RF 246 (493)
..++.||..|. ++......+ -+..++..+...|.++++.++..++..|..+|.....+ .+++- +.+-+
T Consensus 72 ~~a~~~L~~l~~~~~~~~~~i-~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~---~~~~~-------~~~~i 140 (210)
T 4db6_A 72 QEALWALSNIASGGNEQIQAV-IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ---IQAVI-------DAGAL 140 (210)
T ss_dssp HHHHHHHHHHTTSCHHHHHHH-HHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH---HHHHH-------HTTHH
T ss_pred HHHHHHHHHHhcCCcHHHHHH-HHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHH---HHHHH-------HcCcH
Confidence 45677777776 344443444 45568999999999999999999999999999743222 11111 12335
Q ss_pred HHHHhHhhccccccHHHHHHHHHHhhHHhcCCCChhhHHHHHHHHHHCCChHHHHhhhhhhhhhhh
Q psy8949 247 ETLMDYFMNYEVFHIEFMVACMQFINIVVHSVEDMNFRVHLQYEFSRLGLDSYLDKLRHTETLLLH 312 (493)
Q Consensus 247 ~~Lv~~l~~~e~~~~ey~~a~m~fIN~lV~s~eDl~~RVhLR~Ef~~lGL~~iL~kLr~~e~~~lq 312 (493)
..+++.+.+. +.+.+..++..+..+....+ ..+..+...|..+.|.++-..++..++
T Consensus 141 ~~L~~ll~~~---~~~v~~~a~~aL~~l~~~~~------~~~~~~~~~g~i~~L~~ll~~~~~~v~ 197 (210)
T 4db6_A 141 PALVQLLSSP---NEQILQEALWALSNIASGGN------EQKQAVKEAGALEKLEQLQSHENEKIQ 197 (210)
T ss_dssp HHHHHHTTCS---CHHHHHHHHHHHHHHHTSCH------HHHHHHHHTTHHHHHHHGGGCSCHHHH
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHHHHcCCc------HHHHHHHHCCCHHHHHHHHhCCCHHHH
Confidence 6677777653 33444444444444554432 134567788877777666555554443
No 18
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=77.18 E-value=58 Score=31.96 Aligned_cols=188 Identities=12% Similarity=0.051 Sum_probs=92.7
Q ss_pred HHHHHHHHHHhcchhhHHHHhcchhhHHHHHHhhcCCChhHHHHHHHHHHHHhcccCchHHHHHHHHhhHhhccCCcchH
Q psy8949 168 HVCILCLRAIMNNKYGLNMVIKHTEAINSIALSLMHKSLRTKALVLELLAAICLVTGGHEIILAAFDNFKEICQESKRFE 247 (493)
Q Consensus 168 ~~cI~CLkAIMN~~~Gl~~vl~~~~~i~~Ia~sL~s~~~~tr~lVlELLaalCl~~~Gh~~VL~A~d~~k~~~~E~~RF~ 247 (493)
..++.||..+..........+-+...+..+...|.++++.+|..++..|+.+|.. .....+++-. .+-+.
T Consensus 252 ~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~---~~~~~~~~~~-------~~~l~ 321 (450)
T 2jdq_A 252 SPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAG---NRAQIQTVID-------ANIFP 321 (450)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTS---CHHHHHHHHH-------TTHHH
T ss_pred HHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcC---CHHHHHHHHH-------CCCHH
Confidence 3455566655544333333334456889999999999999999999999998863 2222222211 12244
Q ss_pred HHHhHhhccccccHHHHH-HHHHHhhHHhcCCCChhhHHHHHHHHHHCCChHHHHhhhhhhhhhhhhHHHhhhhhhhHHH
Q psy8949 248 TLMDYFMNYEVFHIEFMV-ACMQFINIVVHSVEDMNFRVHLQYEFSRLGLDSYLDKLRHTETLLLHCYLLCLYFYRVQVA 326 (493)
Q Consensus 248 ~Lv~~l~~~e~~~~ey~~-a~m~fIN~lV~s~eDl~~RVhLR~Ef~~lGL~~iL~kLr~~e~~~lq~qi~~~~~~e~~~~ 326 (493)
.+++.+.+. ..+.+. +|..+-|......++ +.+ .+...|+.+.|-.+-...+..+ +..
T Consensus 322 ~L~~~l~~~---~~~v~~~a~~~L~~l~~~~~~~-----~~~-~l~~~~~i~~L~~ll~~~~~~v------------~~~ 380 (450)
T 2jdq_A 322 ALISILQTA---EFRTRKEAAWAITNATSGGSAE-----QIK-YLVELGCIKPLCDLLTVMDSKI------------VQV 380 (450)
T ss_dssp HHHHHHHHS---CHHHHHHHHHHHHHHHHHCCHH-----HHH-HHHHHTCHHHHHHGGGSSCHHH------------HHH
T ss_pred HHHHHHhcC---CHHHHHHHHHHHHHHHcCCCHH-----HHH-HHHHCCCHHHHHHHhcCCCHHH------------HHH
Confidence 566666543 223333 444455544332211 222 2334565555544433233222 223
Q ss_pred HHHHHHhhhhccccchhh---hhhHH--HHHhhchHHHHhhhhcccchhHHHHHHHhhhhhccCc
Q psy8949 327 CMQFINIVVHSVEDMNFR---VHLQY--EFSRLGLDSYLDKLRHTESEELQVACMQFINIVVHSV 386 (493)
Q Consensus 327 ~~~~~~al~~~~~d~d~r---~~~r~--~~~~~~~~~~v~~L~~~~n~~~~v~~m~fiN~li~~~ 386 (493)
+..-+..+....+....+ .-..| .+...|.-+.+..|..+.|.+.+..+...++.+....
T Consensus 381 a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~ 445 (450)
T 2jdq_A 381 ALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGTE 445 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCcc
Confidence 333333333322210000 00011 2223333344566766667777777777777655433
No 19
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=76.92 E-value=43 Score=30.27 Aligned_cols=122 Identities=9% Similarity=0.067 Sum_probs=75.2
Q ss_pred hHHHHHHHHHHhcchhhHHHHhcchhhHHHHHHhhcCCChhHHHHHHHHHHHHhcccCch-HHHHHHHHhhHhhccCCcc
Q psy8949 167 IHVCILCLRAIMNNKYGLNMVIKHTEAINSIALSLMHKSLRTKALVLELLAAICLVTGGH-EIILAAFDNFKEICQESKR 245 (493)
Q Consensus 167 ~~~cI~CLkAIMN~~~Gl~~vl~~~~~i~~Ia~sL~s~~~~tr~lVlELLaalCl~~~Gh-~~VL~A~d~~k~~~~E~~R 245 (493)
...++.||..+..........+-...++..+...|.++++.++..++..|..+|..+... ..+.+ .+-
T Consensus 71 ~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-----------~~~ 139 (252)
T 4db8_A 71 LQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID-----------AGA 139 (252)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH-----------TTH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHH-----------CCC
Confidence 356777888887643344444555578999999999999999999999999998765433 22222 123
Q ss_pred hHHHHhHhhccccccHHHHHHHHHHhhHHhcCCCChhhHHHHHHHHHHCCChHHHHhhhhhhh
Q psy8949 246 FETLMDYFMNYEVFHIEFMVACMQFINIVVHSVEDMNFRVHLQYEFSRLGLDSYLDKLRHTET 308 (493)
Q Consensus 246 F~~Lv~~l~~~e~~~~ey~~a~m~fIN~lV~s~eDl~~RVhLR~Ef~~lGL~~iL~kLr~~e~ 308 (493)
...++..+.+. +.+.+..++..+-.+....++ .+..+...|..+.|-++-...+
T Consensus 140 i~~L~~lL~~~---~~~v~~~a~~~L~~l~~~~~~------~~~~~~~~~~i~~L~~ll~~~~ 193 (252)
T 4db8_A 140 LPALVQLLSSP---NEQILQEALWALSNIASGGNE------QIQAVIDAGALPALVQLLSSPN 193 (252)
T ss_dssp HHHHHHGGGCS---CHHHHHHHHHHHHHHTTSCHH------HHHHHHHTTCHHHHHHGGGCSS
T ss_pred HHHHHHHHhCC---CHHHHHHHHHHHHHHHcCChH------HHHHHHHCCCHHHHHHHHCCCC
Confidence 45667777553 334455555444445544322 2334556777666655543333
No 20
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=72.46 E-value=53 Score=29.25 Aligned_cols=122 Identities=12% Similarity=0.052 Sum_probs=76.7
Q ss_pred hHHHHHHHHHHhcchhhHHHHhcchhhHHHHHHhhcCCChhHHHHHHHHHHHHhccc-CchHHHHHHHHhhHhhccCCcc
Q psy8949 167 IHVCILCLRAIMNNKYGLNMVIKHTEAINSIALSLMHKSLRTKALVLELLAAICLVT-GGHEIILAAFDNFKEICQESKR 245 (493)
Q Consensus 167 ~~~cI~CLkAIMN~~~Gl~~vl~~~~~i~~Ia~sL~s~~~~tr~lVlELLaalCl~~-~Gh~~VL~A~d~~k~~~~E~~R 245 (493)
...++.||..+..........+....++..+...|.++++.++..++..|..+|... .....+.+ .+-
T Consensus 61 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-----------~~~ 129 (252)
T 4hxt_A 61 QKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVD-----------AGG 129 (252)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHH-----------TTH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH-----------CCC
Confidence 356788888887664444555556678999999999999999999999999999533 22222221 233
Q ss_pred hHHHHhHhhccccccHHHHHHHHHHhhHHhcCCCChhhHHHHHHHHHHCCChHHHHhhhhhhh
Q psy8949 246 FETLMDYFMNYEVFHIEFMVACMQFINIVVHSVEDMNFRVHLQYEFSRLGLDSYLDKLRHTET 308 (493)
Q Consensus 246 F~~Lv~~l~~~e~~~~ey~~a~m~fIN~lV~s~eDl~~RVhLR~Ef~~lGL~~iL~kLr~~e~ 308 (493)
+..+++.+.+. +.+.+..++..+-.+....++ .+..+...|..+.|-++-...+
T Consensus 130 i~~L~~~l~~~---~~~~~~~a~~~L~~l~~~~~~------~~~~~~~~~~i~~L~~ll~~~~ 183 (252)
T 4hxt_A 130 VEVLVKLLTST---DSEVQKEAARALANIASGPDE------AIKAIVDAGGVEVLVKLLTSTD 183 (252)
T ss_dssp HHHHHHHTTCS---CHHHHHHHHHHHHHHTTSCHH------HHHHHHHTTHHHHHHHHTTCSC
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHHHHcCCHH------HHHHHHHCcCHHHHHHHHCCCC
Confidence 55667777653 344555555555556554332 1235556776666655544333
No 21
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=69.98 E-value=1e+02 Score=31.48 Aligned_cols=217 Identities=11% Similarity=0.073 Sum_probs=109.1
Q ss_pred HHHHHHHHHhcchhhHHHHhcchhhHHHHHHhhcCCChhHHHHHHHHHHHHhcccCchHHHHHHHHhhHhhccCCcchHH
Q psy8949 169 VCILCLRAIMNNKYGLNMVIKHTEAINSIALSLMHKSLRTKALVLELLAAICLVTGGHEIILAAFDNFKEICQESKRFET 248 (493)
Q Consensus 169 ~cI~CLkAIMN~~~Gl~~vl~~~~~i~~Ia~sL~s~~~~tr~lVlELLaalCl~~~Gh~~VL~A~d~~k~~~~E~~RF~~ 248 (493)
.++.||..+..........+-+..++..+...|.+++..++..++..|+.+|... ....+++- +.+-...
T Consensus 263 ~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~---~~~~~~~~-------~~~~l~~ 332 (528)
T 4b8j_A 263 DACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGD---DAQTQCII-------DHQALPC 332 (528)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC---HHHHHHHH-------TTTHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCC---HHHHHHHH-------HhhhHHH
Confidence 4455555555433333334445568899999999999999999999999998733 22212211 1223445
Q ss_pred HHhHhhccccccHHHH-HHHHHHhhHHhcCCCChhhHHHHHHHHHHCCChHHHHhhhhhhhhhhhhHHHhhhhhhhHHHH
Q psy8949 249 LMDYFMNYEVFHIEFM-VACMQFINIVVHSVEDMNFRVHLQYEFSRLGLDSYLDKLRHTETLLLHCYLLCLYFYRVQVAC 327 (493)
Q Consensus 249 Lv~~l~~~e~~~~ey~-~a~m~fIN~lV~s~eDl~~RVhLR~Ef~~lGL~~iL~kLr~~e~~~lq~qi~~~~~~e~~~~~ 327 (493)
++..+.... ....+ .||..+-| +..+.+ .....+...|+.+.|-++-...+..++ .+.
T Consensus 333 L~~lL~~~~--~~~v~~~A~~~L~n-l~~~~~------~~~~~~~~~~~i~~L~~lL~~~~~~v~------------~~a 391 (528)
T 4b8j_A 333 LLSLLTQNL--KKSIKKEACWTISN-ITAGNK------DQIQAVINAGIIGPLVNLLQTAEFDIK------------KEA 391 (528)
T ss_dssp HHHHHHSCC--CHHHHHHHHHHHHH-HHTSCH------HHHHHHHHTTCHHHHHHHHHHSCHHHH------------HHH
T ss_pred HHHHHcCCC--cHHHHHHHHHHHHH-HHCCCH------HHHHHHHHCCCHHHHHHHHhcCCHHHH------------HHH
Confidence 666666431 22223 34444555 443322 122345566776666555433333332 222
Q ss_pred HHHHHhhhhccccchhhhhhHHHHHhhchHHHHhhhhcccchhHHHHHHHhhhhhccCccccch-----hhhhHHHHhhc
Q psy8949 328 MQFINIVVHSVEDMNFRVHLQYEFSRLGLDSYLDKLRHTESEELQVACMQFINIVVHSVEDMNF-----RVHLQYEFSRL 402 (493)
Q Consensus 328 ~~~~~al~~~~~d~d~r~~~r~~~~~~~~~~~v~~L~~~~n~~~~v~~m~fiN~li~~~~dl~~-----R~hLr~Ef~~l 402 (493)
...+..+.....+ .+.+|=...-.+..+++-|.+ .+.+.+..++..+..++...+...- --....-|...
T Consensus 392 ~~aL~nl~~~~~~----~~~~~l~~~~~i~~L~~lL~~-~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 466 (528)
T 4b8j_A 392 AWAISNATSGGSH----DQIKYLVSEGCIKPLCDLLIC-PDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEA 466 (528)
T ss_dssp HHHHHHHHHHSCH----HHHHHHHHTTCHHHHHHGGGC-SCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHT
T ss_pred HHHHHHHHcCCCH----HHHHHHHHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHC
Confidence 2333333332110 111111011224555665555 3445555555555555544332110 01234445567
Q ss_pred CchHHHhhhccCCcHHHHH
Q psy8949 403 GLDSYLDKLRHTESEELQE 421 (493)
Q Consensus 403 gl~~~l~~lr~~e~~~L~~ 421 (493)
|..+.|.+|..++++++..
T Consensus 467 ~~~~~l~~L~~~~~~~v~~ 485 (528)
T 4b8j_A 467 EGLEKIENLQSHDNNEIYE 485 (528)
T ss_dssp THHHHHHHGGGCSSHHHHH
T ss_pred CcHHHHHHHHcCCCHHHHH
Confidence 7778888888777776553
No 22
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=69.95 E-value=95 Score=31.20 Aligned_cols=208 Identities=11% Similarity=0.114 Sum_probs=100.7
Q ss_pred hhhHHHHHHhhcCCChhHHHHHHHHHHHHhccc----------CchHHHHHHHHhh--------------Hhhcc-----
Q psy8949 191 TEAINSIALSLMHKSLRTKALVLELLAAICLVT----------GGHEIILAAFDNF--------------KEICQ----- 241 (493)
Q Consensus 191 ~~~i~~Ia~sL~s~~~~tr~lVlELLaalCl~~----------~Gh~~VL~A~d~~--------------k~~~~----- 241 (493)
..++..+...|.++++.++..++..|+.+|..+ +|-..+++.+... .....
T Consensus 265 ~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~ 344 (529)
T 1jdh_A 265 EGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEA 344 (529)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTH
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchH
Confidence 356777777778888888888888888887642 2333334443321 11111
Q ss_pred --------CCcchHHHHhHhhccccccHHHHHHHHHHhhHHhcCCCChhhHHHHHHHHHHCCChHHHHhhhhhhhhhhhh
Q psy8949 242 --------ESKRFETLMDYFMNYEVFHIEFMVACMQFINIVVHSVEDMNFRVHLQYEFSRLGLDSYLDKLRHTETLLLHC 313 (493)
Q Consensus 242 --------E~~RF~~Lv~~l~~~e~~~~ey~~a~m~fIN~lV~s~eDl~~RVhLR~Ef~~lGL~~iL~kLr~~e~~~lq~ 313 (493)
+.+-+..++..+.... ..+.+..+...+.-+..+++. |..+...|+.+.|-.+-...+..+++
T Consensus 345 ~~~~~~i~~~~~i~~L~~lL~~~~--~~~v~~~a~~~l~nl~~~~~~-------~~~~~~~~~i~~L~~ll~~~~~~v~~ 415 (529)
T 1jdh_A 345 EMAQNAVRLHYGLPVVVKLLHPPS--HWPLIKATVGLIRNLALCPAN-------HAPLREQGAIPRLVQLLVRAHQDTQR 415 (529)
T ss_dssp HHHHHHHHHTTCHHHHHHTTSTTC--CHHHHHHHHHHHHHHTTSGGG-------HHHHHHTTHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHcCChhHHHHHhcccc--chHHHHHHHHHHHHHhcChhh-------hHHHHHcCCHHHHHHHHHHHhHHHHH
Confidence 1133555555555431 223343444444334444432 24666778666554443334444433
Q ss_pred HHH----------hhhhhhhHHHHHHHHHhhhhccccchhhhhhHHHHHhh-chHHHHhhhhcccchhHHHHHHHhhhhh
Q psy8949 314 YLL----------CLYFYRVQVACMQFINIVVHSVEDMNFRVHLQYEFSRL-GLDSYLDKLRHTESEELQVACMQFINIV 382 (493)
Q Consensus 314 qi~----------~~~~~e~~~~~~~~~~al~~~~~d~d~r~~~r~~~~~~-~~~~~v~~L~~~~n~~~~v~~m~fiN~l 382 (493)
+.- .-..+++...+..-+..+.. +.+. |..+... ++..+++=+.+.+..-.+.++..+-| +
T Consensus 416 ~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~---~~~~----~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~-l 487 (529)
T 1jdh_A 416 RTSMGGTQQQFVEGVRMEEIVEGCTGALHILAR---DVHN----RIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCE-L 487 (529)
T ss_dssp ----------CBTTBCHHHHHHHHHHHHHHHTT---SHHH----HHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHH-H
T ss_pred HHhcccCchhhhccccHHHHHHHHHHHHHHHhc---CchH----HHHHhccCCccHHHHHHcCCchHHHHHHHHHHHH-H
Confidence 210 00112222233333333332 2122 2222221 23445554544332223344444445 2
Q ss_pred ccCccccchhhhhHHHHhhcCchHHHhhhccCCcHHHHHh
Q psy8949 383 VHSVEDMNFRVHLQYEFSRLGLDSYLDKLRHTESEELQER 422 (493)
Q Consensus 383 i~~~~dl~~R~hLr~Ef~~lgl~~~l~~lr~~e~~~L~~q 422 (493)
...+ ..+..+...|..+.|.+|-..+++++..+
T Consensus 488 ~~~~-------~~~~~i~~~~~~~~L~~l~~~~~~~v~~~ 520 (529)
T 1jdh_A 488 AQDK-------EAAEAIEAEGATAPLTELLHSRNEGVATY 520 (529)
T ss_dssp TTSH-------HHHHHHHHTTCHHHHHHGGGCSSHHHHHH
T ss_pred hcCH-------HHHHHHHHcCChHHHHHHhcCCCHHHHHH
Confidence 2221 23556777888899988888888877643
No 23
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=69.45 E-value=64 Score=29.03 Aligned_cols=121 Identities=9% Similarity=0.055 Sum_probs=73.0
Q ss_pred CCCcchHHHHHHHHHHhcc-hhhHHHHhcchhhHHHHHHhhcCCChhHHHHHHHHHHHHhccc-CchHHHHHHHHhhHhh
Q psy8949 162 DPKDDIHVCILCLRAIMNN-KYGLNMVIKHTEAINSIALSLMHKSLRTKALVLELLAAICLVT-GGHEIILAAFDNFKEI 239 (493)
Q Consensus 162 ~~~dd~~~cI~CLkAIMN~-~~Gl~~vl~~~~~i~~Ia~sL~s~~~~tr~lVlELLaalCl~~-~Gh~~VL~A~d~~k~~ 239 (493)
+..+.+..++.||+.++.. ..+... +-...++..+...|.++++.++..++..|..+|... .....+.+
T Consensus 24 ~~~~~~~~a~~~L~~~l~~~~~~~~~-~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~-------- 94 (252)
T 4db8_A 24 DDMQEQLSATRKFSQILSDGNEQIQA-VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID-------- 94 (252)
T ss_dssp SCSSHHHHHHHHHHHHHHHHHHHHHH-HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH--------
T ss_pred CCHHHHHHHHHHHHHHHcCCCchHHH-HHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHH--------
Confidence 3455677889999766643 334444 444568999999999999999999999999999743 22222222
Q ss_pred ccCCcchHHHHhHhhccccccHHHHHHHHHHhhHHhcCCCChhhHHHHHHHHHHCCChHHHHhh
Q psy8949 240 CQESKRFETLMDYFMNYEVFHIEFMVACMQFINIVVHSVEDMNFRVHLQYEFSRLGLDSYLDKL 303 (493)
Q Consensus 240 ~~E~~RF~~Lv~~l~~~e~~~~ey~~a~m~fIN~lV~s~eDl~~RVhLR~Ef~~lGL~~iL~kL 303 (493)
.+-...++..+.++ +.+.+..++..+..+....+ .| +..+...|..+.|-++
T Consensus 95 ---~g~i~~L~~lL~~~---~~~v~~~a~~~L~~l~~~~~---~~---~~~~~~~~~i~~L~~l 146 (252)
T 4db8_A 95 ---AGALPALVQLLSSP---NEQILQEALWALSNIASGGN---EQ---IQAVIDAGALPALVQL 146 (252)
T ss_dssp ---TTHHHHHHHGGGCS---CHHHHHHHHHHHHHHTTSCH---HH---HHHHHHTTHHHHHHHG
T ss_pred ---cCCHHHHHHHHcCC---CHHHHHHHHHHHHHhhcCCc---hH---HHHHHHCCCHHHHHHH
Confidence 12345666666653 34445555554444544332 11 1445566655555444
No 24
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=68.68 E-value=1.4e+02 Score=32.77 Aligned_cols=207 Identities=11% Similarity=0.117 Sum_probs=104.0
Q ss_pred chhhHHHHHHhhcCCChhHHHHHHHHHHHHhccc----------CchHHHHHHHHhh--------------Hhhcc----
Q psy8949 190 HTEAINSIALSLMHKSLRTKALVLELLAAICLVT----------GGHEIILAAFDNF--------------KEICQ---- 241 (493)
Q Consensus 190 ~~~~i~~Ia~sL~s~~~~tr~lVlELLaalCl~~----------~Gh~~VL~A~d~~--------------k~~~~---- 241 (493)
...++..+...|.++++.++..++.+|+.+|..+ +|-..+++.+... .....
T Consensus 397 ~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~ 476 (780)
T 2z6g_A 397 MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQD 476 (780)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTT
T ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCch
Confidence 3457888888888999999999999999888743 3334444444321 11110
Q ss_pred ---------CCcchHHHHhHhhccccccHHHH-HHHHHHhhHHhcCCCChhhHHHHHHHHHHCCChHHHHhhhhhhhhhh
Q psy8949 242 ---------ESKRFETLMDYFMNYEVFHIEFM-VACMQFINIVVHSVEDMNFRVHLQYEFSRLGLDSYLDKLRHTETLLL 311 (493)
Q Consensus 242 ---------E~~RF~~Lv~~l~~~e~~~~ey~-~a~m~fIN~lV~s~eDl~~RVhLR~Ef~~lGL~~iL~kLr~~e~~~l 311 (493)
+..-+..|++.+.... ..+.+ .+|-.+-| |..+++. |..+...|+.+.|-++-...+..+
T Consensus 477 ~~~~~~~v~~~~~l~~L~~lL~~~~--~~~v~~~A~~aL~n-La~~~~~-------~~~i~~~g~i~~Lv~lL~~~~~~~ 546 (780)
T 2z6g_A 477 AEMAQNAVRLHYGLPVVVKLLHPPS--HWPLIKATVGLIRN-LALCPAN-------HAPLREQGAIPRLVQLLVRAHQDT 546 (780)
T ss_dssp HHHHHHHHHHTTCHHHHHHTTSTTC--CHHHHHHHHHHHHH-HHSSHHH-------HHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHhcCCC--hHHHHHHHHHHHHH-HhcCHHH-------HHHHHHCCCHHHHHHHHHhcchhH
Confidence 1122455555555431 22333 33444444 3333221 245667776555544433333223
Q ss_pred hhHH----------HhhhhhhhHHHHHHHHHhhhhccccchhhhhhHHHHHhh-chHHHHhhhhcccchhHHHH-HHHhh
Q psy8949 312 HCYL----------LCLYFYRVQVACMQFINIVVHSVEDMNFRVHLQYEFSRL-GLDSYLDKLRHTESEELQVA-CMQFI 379 (493)
Q Consensus 312 q~qi----------~~~~~~e~~~~~~~~~~al~~~~~d~d~r~~~r~~~~~~-~~~~~v~~L~~~~n~~~~v~-~m~fi 379 (493)
+++. ..-..++++..+..-+..|... ...|+.+... ++..+++-|++. +.+.+.+ +..+-
T Consensus 547 ~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~-------~~~~~~l~~~~~i~~Lv~lL~~~-~~~v~~~a~~aL~ 618 (780)
T 2z6g_A 547 QRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARD-------IHNRIVIRGLNTIPLFVQLLYSP-IENIQRVAAGVLC 618 (780)
T ss_dssp HHTTC------CCSTTCCHHHHHHHHHHHHHHHTTS-------HHHHHHHHHTCCHHHHHHGGGCS-CHHHHHHHHHHHH
T ss_pred HHHHhhccccchhhcccChHHHHHHHHHHHHHHhcC-------hhhHHHHHHCCcHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 2210 0001233444444444444321 1223333222 345555555543 4444444 44444
Q ss_pred hhhccCccccchhhhhHHHHhhcCchHHHhhhccCCcHHHHHh
Q psy8949 380 NIVVHSVEDMNFRVHLQYEFSRLGLDSYLDKLRHTESEELQER 422 (493)
Q Consensus 380 N~li~~~~dl~~R~hLr~Ef~~lgl~~~l~~lr~~e~~~L~~q 422 (493)
|. ...+ ..+..|...|..+.|.+|-..+++++...
T Consensus 619 ~L-~~~~-------~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~ 653 (780)
T 2z6g_A 619 EL-AQDK-------EAAEAIEAEGATAPLTELLHSRNEGVATY 653 (780)
T ss_dssp HH-HTSH-------HHHHHHHHTTCHHHHHHGGGCSCHHHHHH
T ss_pred HH-hcCH-------HHHHHHHHCCCHHHHHHHHcCCCHHHHHH
Confidence 43 2221 24667777888888888888878777543
No 25
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=61.92 E-value=22 Score=31.72 Aligned_cols=67 Identities=22% Similarity=0.325 Sum_probs=47.6
Q ss_pred cchHHHHHHHHHHhcchhhHHHHhcchhhH-HHHHHhhcCCChhHHHHHHHHHHHHhc---cc-----CchHHHHHHHHh
Q psy8949 165 DDIHVCILCLRAIMNNKYGLNMVIKHTEAI-NSIALSLMHKSLRTKALVLELLAAICL---VT-----GGHEIILAAFDN 235 (493)
Q Consensus 165 dd~~~cI~CLkAIMN~~~Gl~~vl~~~~~i-~~Ia~sL~s~~~~tr~lVlELLaalCl---~~-----~Gh~~VL~A~d~ 235 (493)
.|..+.++|++.+- ... -|+..| ..|..+|..++...+..+..||..++- ++ .|...|++.++.
T Consensus 23 ~D~~EA~~cl~EL~-~p~------f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~~~Gf~~vl~~ldD 95 (152)
T 2ion_A 23 GDISEAEHCLKELE-VPH------FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIYNEIPD 95 (152)
T ss_dssp CCHHHHHHHHHHHT-CGG------GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhC-CCc------chHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHhChH
Confidence 36678999999973 221 123333 567778887778899999999999873 32 578888888877
Q ss_pred hHh
Q psy8949 236 FKE 238 (493)
Q Consensus 236 ~k~ 238 (493)
...
T Consensus 96 l~l 98 (152)
T 2ion_A 96 INL 98 (152)
T ss_dssp HHH
T ss_pred hcc
Confidence 763
No 26
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=61.02 E-value=25 Score=30.33 Aligned_cols=66 Identities=23% Similarity=0.370 Sum_probs=46.6
Q ss_pred cchHHHHHHHHHHhcchhhHHHHhcchhhH-HHHHHhhcCCChhHHHHHHHHHHHHhc---cc-----CchHHHHHHHHh
Q psy8949 165 DDIHVCILCLRAIMNNKYGLNMVIKHTEAI-NSIALSLMHKSLRTKALVLELLAAICL---VT-----GGHEIILAAFDN 235 (493)
Q Consensus 165 dd~~~cI~CLkAIMN~~~Gl~~vl~~~~~i-~~Ia~sL~s~~~~tr~lVlELLaalCl---~~-----~Gh~~VL~A~d~ 235 (493)
.|..+.++|+|.+- .+. + |+..| ..|..+|..++...+..+..||..++- ++ .|...|++.++.
T Consensus 21 ~D~~Ea~~cl~eL~-~p~-f-----~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~~~Gf~~v~~~l~D 93 (129)
T 2nsz_A 21 GDISEAEHCLKELE-VPH-F-----HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIYNEIPD 93 (129)
T ss_dssp CCHHHHHHHHHHHT-CGG-G-----HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhC-CCc-c-----HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHhhChH
Confidence 35678999999973 221 1 33333 557778888777899999999998873 22 477777777777
Q ss_pred hH
Q psy8949 236 FK 237 (493)
Q Consensus 236 ~k 237 (493)
..
T Consensus 94 l~ 95 (129)
T 2nsz_A 94 IN 95 (129)
T ss_dssp HH
T ss_pred hh
Confidence 75
No 27
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=59.13 E-value=1.4e+02 Score=29.21 Aligned_cols=115 Identities=8% Similarity=-0.002 Sum_probs=65.5
Q ss_pred HHHHHHHHHhcchhhHHHHhcchhhHHHHHHhhcCCChhHHHHHHHHHHHHhcccCchHHHHHHHHhhHhhccCCcchHH
Q psy8949 169 VCILCLRAIMNNKYGLNMVIKHTEAINSIALSLMHKSLRTKALVLELLAAICLVTGGHEIILAAFDNFKEICQESKRFET 248 (493)
Q Consensus 169 ~cI~CLkAIMN~~~Gl~~vl~~~~~i~~Ia~sL~s~~~~tr~lVlELLaalCl~~~Gh~~VL~A~d~~k~~~~E~~RF~~ 248 (493)
.+..||..+..........+....++..+...|.++++.++..++..|..+|...+.. .+++- +.+-...
T Consensus 211 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~---~~~~~-------~~~~l~~ 280 (450)
T 2jdq_A 211 DACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQ---TQVIL-------NCSALQS 280 (450)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH---HHHHH-------TTTHHHH
T ss_pred HHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHH---HHHHH-------HCccHHH
Confidence 4566666666543333333344567888999999999999999999999998643221 11111 1123445
Q ss_pred HHhHhhccccccHHHHHHHHHHhhHHhcCCCChhhHHHHHHHHHHCCChHHHHh
Q psy8949 249 LMDYFMNYEVFHIEFMVACMQFINIVVHSVEDMNFRVHLQYEFSRLGLDSYLDK 302 (493)
Q Consensus 249 Lv~~l~~~e~~~~ey~~a~m~fIN~lV~s~eDl~~RVhLR~Ef~~lGL~~iL~k 302 (493)
++..+..+ +...+.+++..+..+..+.++ ....+...|+.+.|-+
T Consensus 281 L~~ll~~~---~~~vr~~a~~~L~~l~~~~~~------~~~~~~~~~~l~~L~~ 325 (450)
T 2jdq_A 281 LLHLLSSP---KESIKKEACWTISNITAGNRA------QIQTVIDANIFPALIS 325 (450)
T ss_dssp HHHHTTCS---SHHHHHHHHHHHHHHTTSCHH------HHHHHHHTTHHHHHHH
T ss_pred HHHHHcCC---CHHHHHHHHHHHHHHHcCCHH------HHHHHHHCCCHHHHHH
Confidence 66666543 344455555555556654322 1223445565554433
No 28
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=58.09 E-value=19 Score=32.62 Aligned_cols=65 Identities=14% Similarity=0.228 Sum_probs=42.7
Q ss_pred cchHHHHHHHHHHhcchhhHHHHhcchhhHHH-HHHhhcCCChhHHHHHHHHHHHHhc--cc-----CchHHHHHHHHhh
Q psy8949 165 DDIHVCILCLRAIMNNKYGLNMVIKHTEAINS-IALSLMHKSLRTKALVLELLAAICL--VT-----GGHEIILAAFDNF 236 (493)
Q Consensus 165 dd~~~cI~CLkAIMN~~~Gl~~vl~~~~~i~~-Ia~sL~s~~~~tr~lVlELLaalCl--~~-----~Gh~~VL~A~d~~ 236 (493)
.|..+++.|++.+-... -|+..|.. |..+|+. +.+.|.++..||+.+|- ++ .|...+++.++..
T Consensus 24 ~D~~Ea~~~l~eL~~p~-------~~~~~V~~~I~~aldr-k~~ere~~s~LL~~L~~~~ls~~~i~~Gf~~lle~ldDl 95 (165)
T 2rg8_A 24 GDTNEVAEMLRDLNLGE-------MKSGVPVLAVSLALEG-KASHREMTSKLLSDLCGTVMSTTDVEKSFDKLLKDLPEL 95 (165)
T ss_dssp CCHHHHHHHHHHHTCSG-------GGGHHHHHHHHHHHTS-CHHHHHHHHHHHHHHBTTTBCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCcc-------cHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhChhh
Confidence 46689999999864332 24555544 4556655 57889999999999973 11 3566666666555
Q ss_pred H
Q psy8949 237 K 237 (493)
Q Consensus 237 k 237 (493)
.
T Consensus 96 ~ 96 (165)
T 2rg8_A 96 A 96 (165)
T ss_dssp H
T ss_pred c
Confidence 4
No 29
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=56.02 E-value=1.8e+02 Score=29.66 Aligned_cols=189 Identities=10% Similarity=0.043 Sum_probs=95.1
Q ss_pred HHHHHHHHHHhcc-hhhHHHHhcchhhHHHHHHhhcCCChhHHHHHHHHHHHHhcccCchHHHHHHHHhhHhhccCCcch
Q psy8949 168 HVCILCLRAIMNN-KYGLNMVIKHTEAINSIALSLMHKSLRTKALVLELLAAICLVTGGHEIILAAFDNFKEICQESKRF 246 (493)
Q Consensus 168 ~~cI~CLkAIMN~-~~Gl~~vl~~~~~i~~Ia~sL~s~~~~tr~lVlELLaalCl~~~Gh~~VL~A~d~~k~~~~E~~RF 246 (493)
..++.||..|... ......++ +..++..+...|.++++.+|..++..|+.+|... .....++- +.+=+
T Consensus 317 ~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~---~~~~~~~~-------~~~~l 385 (530)
T 1wa5_B 317 TPALRAVGNIVTGNDLQTQVVI-NAGVLPALRLLLSSPKENIKKEACWTISNITAGN---TEQIQAVI-------DANLI 385 (530)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHH-HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC---HHHHHHHH-------HTTCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHH-HcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC---HHHHHHHH-------HCCCH
Confidence 3455555555532 22333333 3468889999999999999999999999988632 22222221 11335
Q ss_pred HHHHhHhhccccccHHHHH-HHHHHhhHHhcCCCChhhHHHHHHHHHHCCChHHHHhhhhhhhhhhhhHHHhhhhhhhHH
Q psy8949 247 ETLMDYFMNYEVFHIEFMV-ACMQFINIVVHSVEDMNFRVHLQYEFSRLGLDSYLDKLRHTETLLLHCYLLCLYFYRVQV 325 (493)
Q Consensus 247 ~~Lv~~l~~~e~~~~ey~~-a~m~fIN~lV~s~eDl~~RVhLR~Ef~~lGL~~iL~kLr~~e~~~lq~qi~~~~~~e~~~ 325 (493)
..++..+... +.+.+. ++-.+-|....+.+.-. ....+...|..+.|-.+-...+..+ +.
T Consensus 386 ~~L~~lL~~~---~~~v~~~a~~aL~~l~~~~~~~~~----~~~~l~~~~~l~~L~~ll~~~~~~v------------~~ 446 (530)
T 1wa5_B 386 PPLVKLLEVA---EYKTKKEACWAISNASSGGLQRPD----IIRYLVSQGCIKPLCDLLEIADNRI------------IE 446 (530)
T ss_dssp HHHHHHHHHS---CHHHHHHHHHHHHHHHHHTTTCTH----HHHHHHHTTCHHHHHHHTTTCCHHH------------HH
T ss_pred HHHHHHHhcC---CHHHHHHHHHHHHHHHhcCCCcHH----HHHHHHHCCCHHHHHHHHhCCCHHH------------HH
Confidence 5677777543 233343 44444454443322101 1223456777666655543333222 22
Q ss_pred HHHHHHHhhhhccccchhh---hhhHHH--HHhhchHHHHhhhhcccchhHHHHHHHhhhhhccCc
Q psy8949 326 ACMQFINIVVHSVEDMNFR---VHLQYE--FSRLGLDSYLDKLRHTESEELQVACMQFINIVVHSV 386 (493)
Q Consensus 326 ~~~~~~~al~~~~~d~d~r---~~~r~~--~~~~~~~~~v~~L~~~~n~~~~v~~m~fiN~li~~~ 386 (493)
.++..+..++...+..... ....|. +...|.-+.+..|.++.+.+........++.+....
T Consensus 447 ~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~~~~~ 512 (530)
T 1wa5_B 447 VTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGEE 512 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSSSC
T ss_pred HHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCcc
Confidence 3333344444322211000 001122 333444445666766677766666666666555443
No 30
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=52.49 E-value=1.2e+02 Score=26.43 Aligned_cols=119 Identities=9% Similarity=0.069 Sum_probs=69.9
Q ss_pred cchHHHHHHHHHHhcchhhHHHHhcchhhHHHHHHhhcCCChhHHHHHHHHHHHHhcccC-chHHHHHHHHhhHhhccCC
Q psy8949 165 DDIHVCILCLRAIMNNKYGLNMVIKHTEAINSIALSLMHKSLRTKALVLELLAAICLVTG-GHEIILAAFDNFKEICQES 243 (493)
Q Consensus 165 dd~~~cI~CLkAIMN~~~Gl~~vl~~~~~i~~Ia~sL~s~~~~tr~lVlELLaalCl~~~-Gh~~VL~A~d~~k~~~~E~ 243 (493)
+-...++.||..+..........+-...++..+...|.++++.++..++..|..+|.... ....+. +.
T Consensus 27 ~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~-----------~~ 95 (210)
T 4db6_A 27 QELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI-----------DA 95 (210)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH-----------HT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHH-----------HC
Confidence 334567888888874333333344445789999999999999999999999999986432 222222 12
Q ss_pred cchHHHHhHhhccccccHHHHHHHHHHhhHHhcCCCChhhHHHHHHHHHHCCChHHHHhh
Q psy8949 244 KRFETLMDYFMNYEVFHIEFMVACMQFINIVVHSVEDMNFRVHLQYEFSRLGLDSYLDKL 303 (493)
Q Consensus 244 ~RF~~Lv~~l~~~e~~~~ey~~a~m~fIN~lV~s~eDl~~RVhLR~Ef~~lGL~~iL~kL 303 (493)
+-...++..+.+. +.+.+..+...+..+....++ .+..+...|..+.|-++
T Consensus 96 g~i~~L~~lL~~~---~~~v~~~a~~~L~~l~~~~~~------~~~~~~~~~~i~~L~~l 146 (210)
T 4db6_A 96 GALPALVQLLSSP---NEQILQEALWALSNIASGGNE------QIQAVIDAGALPALVQL 146 (210)
T ss_dssp TCHHHHHHHTTCS---CHHHHHHHHHHHHHHTTSCHH------HHHHHHHTTHHHHHHHH
T ss_pred CCHHHHHHHHcCC---cHHHHHHHHHHHHHHHcCCHH------HHHHHHHcCcHHHHHHH
Confidence 3455667777654 233344444443334433221 22345566765555444
No 31
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=50.08 E-value=2.6e+02 Score=30.75 Aligned_cols=189 Identities=13% Similarity=0.120 Sum_probs=105.5
Q ss_pred HHHhcchhhHHHHHHhhcCCChhHHHHHHHHHHHHhcccCc--hHHHHH---HHHhhHhhc-------------------
Q psy8949 185 NMVIKHTEAINSIALSLMHKSLRTKALVLELLAAICLVTGG--HEIILA---AFDNFKEIC------------------- 240 (493)
Q Consensus 185 ~~vl~~~~~i~~Ia~sL~s~~~~tr~lVlELLaalCl~~~G--h~~VL~---A~d~~k~~~------------------- 240 (493)
+.++++++.|..+.-.|.+....+|--++++|+++|.-... .+.|+. |+..+-...
T Consensus 115 d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt 194 (651)
T 3grl_A 115 EIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALT 194 (651)
T ss_dssp HHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHH
T ss_pred HHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHh
Confidence 46678899999999999999999999999999999975421 223332 222221111
Q ss_pred ----------cCCcchHHHHhHhhcccc-ccHHHHHHHHHHhhHHhcCCCChhhHHHHHHHHHHCCChHHHHhhhhhhhh
Q psy8949 241 ----------QESKRFETLMDYFMNYEV-FHIEFMVACMQFINIVVHSVEDMNFRVHLQYEFSRLGLDSYLDKLRHTETL 309 (493)
Q Consensus 241 ----------~E~~RF~~Lv~~l~~~e~-~~~ey~~a~m~fIN~lV~s~eDl~~RVhLR~Ef~~lGL~~iL~kLr~~e~~ 309 (493)
.-.+-|+.+++-++..+. ..-...-.|+.+++.++..- ..-|+-|...|..+-|.+|-..+.
T Consensus 195 ~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N------~sNQ~~FrEt~~i~~L~~LL~~~~- 267 (651)
T 3grl_A 195 RSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNN------NSNQNFFKEGSYIQRMKPWFEVGD- 267 (651)
T ss_dssp TTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTC------HHHHHHHHHTTCGGGGGGGGCCCS-
T ss_pred cCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcC------HHHHHHHHHcCCHHHHHHHhCCCc-
Confidence 112457777776654321 11234568999999998762 234777888887666655533211
Q ss_pred hhhhHHHhhhhhhhHH--HHHHHHHhhhhccccc-hhhhhhHHHHHhhc-hHHHHhhhhcc-cchhHHHHHHHhhhhhcc
Q psy8949 310 LLHCYLLCLYFYRVQV--ACMQFINIVVHSVEDM-NFRVHLQYEFSRLG-LDSYLDKLRHT-ESEELQVACMQFINIVVH 384 (493)
Q Consensus 310 ~lq~qi~~~~~~e~~~--~~~~~~~al~~~~~d~-d~r~~~r~~~~~~~-~~~~v~~L~~~-~n~~~~v~~m~fiN~li~ 384 (493)
+...|..-.+.. ..++.+.-++...... +.+.+|+. +-..| ++.+++=+... -.++.+...+.-+-.+|.
T Consensus 268 ----~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~-~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~ir 342 (651)
T 3grl_A 268 ----ENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKA-MFQCGLLQQLCTILMATGVPADILTETINTVSEVIR 342 (651)
T ss_dssp ----CSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHH-HHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHT
T ss_pred ----cccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHH-HHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHh
Confidence 112233112222 5667777777754433 34455543 33323 34444433322 234444444444444443
Q ss_pred C
Q psy8949 385 S 385 (493)
Q Consensus 385 ~ 385 (493)
+
T Consensus 343 g 343 (651)
T 3grl_A 343 G 343 (651)
T ss_dssp T
T ss_pred C
Confidence 3
No 32
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=47.21 E-value=2.4e+02 Score=28.55 Aligned_cols=187 Identities=10% Similarity=0.050 Sum_probs=94.8
Q ss_pred HHHHHHHHHhc-chhhHHHHhcchhhHHHHHHhhcCC-ChhHHHHHHHHHHHHhcccCchHHHHHHHHhhHhhccCCcch
Q psy8949 169 VCILCLRAIMN-NKYGLNMVIKHTEAINSIALSLMHK-SLRTKALVLELLAAICLVTGGHEIILAAFDNFKEICQESKRF 246 (493)
Q Consensus 169 ~cI~CLkAIMN-~~~Gl~~vl~~~~~i~~Ia~sL~s~-~~~tr~lVlELLaalCl~~~Gh~~VL~A~d~~k~~~~E~~RF 246 (493)
.++.||..|.. +......++ +..++..+...|.++ ++.+++.++-.|+.+|... .....++- +.+-+
T Consensus 305 ~a~~~L~nl~~~~~~~~~~~~-~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~---~~~~~~~~-------~~~~i 373 (528)
T 4b8j_A 305 PALRTVGNIVTGDDAQTQCII-DHQALPCLLSLLTQNLKKSIKKEACWTISNITAGN---KDQIQAVI-------NAGII 373 (528)
T ss_dssp HHHHHHHHHTTSCHHHHHHHH-TTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSC---HHHHHHHH-------HTTCH
T ss_pred HHHHHHHHHHcCCHHHHHHHH-HhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCC---HHHHHHHH-------HCCCH
Confidence 34455555543 233333444 466888899999888 9999999999999998632 22222221 12346
Q ss_pred HHHHhHhhccccccHHHHH-HHHHHhhHHhcCCCChhhHHHHHHHHHHCCChHHHHhhhhhhhhhhhhHHHhhhhhhhHH
Q psy8949 247 ETLMDYFMNYEVFHIEFMV-ACMQFINIVVHSVEDMNFRVHLQYEFSRLGLDSYLDKLRHTETLLLHCYLLCLYFYRVQV 325 (493)
Q Consensus 247 ~~Lv~~l~~~e~~~~ey~~-a~m~fIN~lV~s~eDl~~RVhLR~Ef~~lGL~~iL~kLr~~e~~~lq~qi~~~~~~e~~~ 325 (493)
..|+..+.+. ..+.+. ++..+-|...++.+ . .+..+...|..+.|-.+-...+..+ ..
T Consensus 374 ~~L~~lL~~~---~~~v~~~a~~aL~nl~~~~~~--~----~~~~l~~~~~i~~L~~lL~~~d~~v------------~~ 432 (528)
T 4b8j_A 374 GPLVNLLQTA---EFDIKKEAAWAISNATSGGSH--D----QIKYLVSEGCIKPLCDLLICPDIRI------------VT 432 (528)
T ss_dssp HHHHHHHHHS---CHHHHHHHHHHHHHHHHHSCH--H----HHHHHHHTTCHHHHHHGGGCSCHHH------------HH
T ss_pred HHHHHHHhcC---CHHHHHHHHHHHHHHHcCCCH--H----HHHHHHHCCCHHHHHHHHcCCCHHH------------HH
Confidence 6777777653 233333 44444554444222 1 2234456676666655543333222 22
Q ss_pred HHHHHHHhhhhccccchhh---hhhHH--HHHhhchHHHHhhhhcccchhHHHHHHHhhhhhccCcc
Q psy8949 326 ACMQFINIVVHSVEDMNFR---VHLQY--EFSRLGLDSYLDKLRHTESEELQVACMQFINIVVHSVE 387 (493)
Q Consensus 326 ~~~~~~~al~~~~~d~d~r---~~~r~--~~~~~~~~~~v~~L~~~~n~~~~v~~m~fiN~li~~~~ 387 (493)
.++..+..++...+..... -...| .+...|.-+.+..|.+.+|.+....+...+..+....+
T Consensus 433 ~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~~~~e~ 499 (528)
T 4b8j_A 433 VCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWMDEE 499 (528)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCcc
Confidence 3334444444322210000 00011 12233333456667777777777777766665554433
No 33
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=44.73 E-value=2.7e+02 Score=28.34 Aligned_cols=217 Identities=11% Similarity=0.017 Sum_probs=107.2
Q ss_pred HHHHHHHHHhcch-hhHHHHhcchhhHHHHHHhhcCCChhHHHHHHHHHHHHhcccCchHHHHHHHHhhHhhccCCcchH
Q psy8949 169 VCILCLRAIMNNK-YGLNMVIKHTEAINSIALSLMHKSLRTKALVLELLAAICLVTGGHEIILAAFDNFKEICQESKRFE 247 (493)
Q Consensus 169 ~cI~CLkAIMN~~-~Gl~~vl~~~~~i~~Ia~sL~s~~~~tr~lVlELLaalCl~~~Gh~~VL~A~d~~k~~~~E~~RF~ 247 (493)
.++.||..+.... .....++. ..++..+...|.+++..++..++..|..+|...+ ...+++-. .+-..
T Consensus 276 ~a~~~L~~L~~~~~~~~~~~~~-~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~---~~~~~~~~-------~~~l~ 344 (530)
T 1wa5_B 276 DACWAISYLSDGPQEAIQAVID-VRIPKRLVELLSHESTLVQTPALRAVGNIVTGND---LQTQVVIN-------AGVLP 344 (530)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHH-TTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH---HHHHHHHH-------TTHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHh-cCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCH---HHHHHHHH-------cchHH
Confidence 4566666665432 33444443 4578889999999999999999999999986432 11111111 12234
Q ss_pred HHHhHhhccccccHHHHHHHHHHhhHHhcCCCChhhHHHHHHHHHHCCChHHHHhhhhhhhhhhhhHHHhhhhhhhHHHH
Q psy8949 248 TLMDYFMNYEVFHIEFMVACMQFINIVVHSVEDMNFRVHLQYEFSRLGLDSYLDKLRHTETLLLHCYLLCLYFYRVQVAC 327 (493)
Q Consensus 248 ~Lv~~l~~~e~~~~ey~~a~m~fIN~lV~s~eDl~~RVhLR~Ef~~lGL~~iL~kLr~~e~~~lq~qi~~~~~~e~~~~~ 327 (493)
.++..+... ....+..++..+..+....++ +++ .+...|+.+.|-.+-...+..+ +.+.
T Consensus 345 ~L~~lL~~~---~~~vr~~A~~aL~~l~~~~~~-----~~~-~~~~~~~l~~L~~lL~~~~~~v------------~~~a 403 (530)
T 1wa5_B 345 ALRLLLSSP---KENIKKEACWTISNITAGNTE-----QIQ-AVIDANLIPPLVKLLEVAEYKT------------KKEA 403 (530)
T ss_dssp HHHHHTTCS---CHHHHHHHHHHHHHHTTSCHH-----HHH-HHHHTTCHHHHHHHHHHSCHHH------------HHHH
T ss_pred HHHHHHcCC---CHHHHHHHHHHHHHHHcCCHH-----HHH-HHHHCCCHHHHHHHHhcCCHHH------------HHHH
Confidence 556666553 334444444444445543221 222 3445676665544433333222 2222
Q ss_pred HHHHHhhhhccccchhhhhhHHHHHhhchHHHHhhhhcccchhHHHHHHHhhhhhccCccccch-----hhhhHHHHhhc
Q psy8949 328 MQFINIVVHSVEDMNFRVHLQYEFSRLGLDSYLDKLRHTESEELQVACMQFINIVVHSVEDMNF-----RVHLQYEFSRL 402 (493)
Q Consensus 328 ~~~~~al~~~~~d~d~r~~~r~~~~~~~~~~~v~~L~~~~n~~~~v~~m~fiN~li~~~~dl~~-----R~hLr~Ef~~l 402 (493)
...+..+....... ..+.++-...-.+..+++-|.+. +...+..++..+..++...+...- --.....|...
T Consensus 404 ~~aL~~l~~~~~~~--~~~~~~l~~~~~l~~L~~ll~~~-~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 480 (530)
T 1wa5_B 404 CWAISNASSGGLQR--PDIIRYLVSQGCIKPLCDLLEIA-DNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKA 480 (530)
T ss_dssp HHHHHHHHHHTTTC--THHHHHHHHTTCHHHHHHHTTTC-CHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHT
T ss_pred HHHHHHHHhcCCCc--HHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHc
Confidence 23333333221110 01112211112345555555543 455555555555555543322100 01223445667
Q ss_pred CchHHHhhhccCCcHHHH
Q psy8949 403 GLDSYLDKLRHTESEELQ 420 (493)
Q Consensus 403 gl~~~l~~lr~~e~~~L~ 420 (493)
|..+.|..|....++++.
T Consensus 481 g~~~~L~~L~~~~~~~v~ 498 (530)
T 1wa5_B 481 GGMEKIFNCQQNENDKIY 498 (530)
T ss_dssp THHHHHHGGGGCSCHHHH
T ss_pred CcHHHHHHHHcCCCHHHH
Confidence 777888777777776654
No 34
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=43.40 E-value=38 Score=33.69 Aligned_cols=67 Identities=24% Similarity=0.342 Sum_probs=48.2
Q ss_pred cchHHHHHHHHHHhcchhhHHHHhcchhhH-HHHHHhhcCCChhHHHHHHHHHHHHhc---cc-----CchHHHHHHHHh
Q psy8949 165 DDIHVCILCLRAIMNNKYGLNMVIKHTEAI-NSIALSLMHKSLRTKALVLELLAAICL---VT-----GGHEIILAAFDN 235 (493)
Q Consensus 165 dd~~~cI~CLkAIMN~~~Gl~~vl~~~~~i-~~Ia~sL~s~~~~tr~lVlELLaalCl---~~-----~Gh~~VL~A~d~ 235 (493)
.|..++++|++.+--.. -|+..| ..|..+|..++.+++..+..||..++- ++ .|...|++.++.
T Consensus 180 ~D~~EA~~ci~EL~~p~-------f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~~Gf~~vl~~l~D 252 (307)
T 2zu6_B 180 GDISEAEHCLKELEVPH-------FHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRGYERIYNEIPD 252 (307)
T ss_dssp CCHHHHHHHHHHHCCGG-------GHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCc-------chHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhccH
Confidence 36689999999985321 123333 456778887778899999999998883 22 588888888887
Q ss_pred hHh
Q psy8949 236 FKE 238 (493)
Q Consensus 236 ~k~ 238 (493)
...
T Consensus 253 l~l 255 (307)
T 2zu6_B 253 INL 255 (307)
T ss_dssp HHH
T ss_pred hhc
Confidence 763
No 35
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=34.50 E-value=1.7e+02 Score=33.06 Aligned_cols=119 Identities=13% Similarity=0.098 Sum_probs=79.3
Q ss_pred HHHHHHHHHHhcchhhHHHHhcchhhHHHHHHhhcCCChhHHHHHHHHHHHHhcccCchHHHHHHHHhhHhhccCCcchH
Q psy8949 168 HVCILCLRAIMNNKYGLNMVIKHTEAINSIALSLMHKSLRTKALVLELLAAICLVTGGHEIILAAFDNFKEICQESKRFE 247 (493)
Q Consensus 168 ~~cI~CLkAIMN~~~Gl~~vl~~~~~i~~Ia~sL~s~~~~tr~lVlELLaalCl~~~Gh~~VL~A~d~~k~~~~E~~RF~ 247 (493)
-....||..|+-+......+......+..+...+.++...+++.+.-.|+.++.. +....+++ ....+-..
T Consensus 641 ~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~---s~~~~~~i------i~~~g~I~ 711 (810)
T 3now_A 641 RAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSV---SVKCCEKI------LAIASWLD 711 (810)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH---CHHHHHHH------HTSTTHHH
T ss_pred HHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCC---CHHHHHHH------HHHcCCHH
Confidence 4567788888877777777775567899999999999999999999999998863 22222222 11123355
Q ss_pred HHHhHhhccccccHHHHHHHHHHhhHHhcCCCChhhHHHHHHHHHHCCChHHHHhhh
Q psy8949 248 TLMDYFMNYEVFHIEFMVACMQFINIVVHSVEDMNFRVHLQYEFSRLGLDSYLDKLR 304 (493)
Q Consensus 248 ~Lv~~l~~~e~~~~ey~~a~m~fIN~lV~s~eDl~~RVhLR~Ef~~lGL~~iL~kLr 304 (493)
+|++.+.+. +..+ -..|+..+.|..-++. ..+..+..+|..+.|..|-
T Consensus 712 ~Lv~LL~s~-d~~v-q~~A~~aL~NL~~~s~-------e~~~~l~e~G~i~~L~~LL 759 (810)
T 3now_A 712 ILHTLIANP-SPAV-QHRGIVIILNMINAGE-------EIAKKLFETDIMELLSGLG 759 (810)
T ss_dssp HHHHHHTCS-SHHH-HHHHHHHHHHHHTTCH-------HHHHHHHTSTHHHHHTTSC
T ss_pred HHHHHHCCC-CHHH-HHHHHHHHHHHHhCCH-------HHHHHHHHCCCHHHHHHHH
Confidence 777777653 2222 2345666667544432 2457788899888887774
No 36
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=30.26 E-value=89 Score=27.22 Aligned_cols=71 Identities=11% Similarity=0.026 Sum_probs=46.6
Q ss_pred hHHHHHHHHHHhc-chhhHHHHhcchhhHHHHHHhhcCCChhHHHHHHHHHHHHhcccC---chHHHHHHHHhhH
Q psy8949 167 IHVCILCLRAIMN-NKYGLNMVIKHTEAINSIALSLMHKSLRTKALVLELLAAICLVTG---GHEIILAAFDNFK 237 (493)
Q Consensus 167 ~~~cI~CLkAIMN-~~~Gl~~vl~~~~~i~~Ia~sL~s~~~~tr~lVlELLaalCl~~~---Gh~~VL~A~d~~k 237 (493)
+...+.=|-++|. ...-+..-+...+.++.+..-+...++.+|..+++++-.-..... +...|-++...++
T Consensus 59 ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f~~~~~l~~i~~~Y~~Lk 133 (140)
T 3ldz_A 59 AMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFKNDPQLSLISAMIKNLK 133 (140)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHTTCGGGTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHH
Confidence 4445556667764 457778778888888887776666788999999999876554322 2334555544443
No 37
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=28.67 E-value=5.3e+02 Score=27.03 Aligned_cols=222 Identities=12% Similarity=0.099 Sum_probs=110.2
Q ss_pred HHHHHHHHHhcchhhHHHHhcchhhHHHHHHhhcCC--ChhHHHHHHHHHHHHhcccCchHHHHHHHHhhHhhccCCcch
Q psy8949 169 VCILCLRAIMNNKYGLNMVIKHTEAINSIALSLMHK--SLRTKALVLELLAAICLVTGGHEIILAAFDNFKEICQESKRF 246 (493)
Q Consensus 169 ~cI~CLkAIMN~~~Gl~~vl~~~~~i~~Ia~sL~s~--~~~tr~lVlELLaalCl~~~Gh~~VL~A~d~~k~~~~E~~RF 246 (493)
.+..||..+..........+....++..+...|.+. ...++..++..|..+|...+..+..-.++-. .+-+
T Consensus 282 ~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~-------~~~l 354 (644)
T 2z6h_A 282 CAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRL-------HYGL 354 (644)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHH-------TTHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHH-------ccCh
Confidence 345555555443222233333455788888777753 3678888888888887532211111111111 1225
Q ss_pred HHHHhHhhccccccHHHHHHHHHHhhHHhcCCCChhhHHHHHHHHHHCCChHHHHhhhhhhhhhhhhHHH----------
Q psy8949 247 ETLMDYFMNYEVFHIEFMVACMQFINIVVHSVEDMNFRVHLQYEFSRLGLDSYLDKLRHTETLLLHCYLL---------- 316 (493)
Q Consensus 247 ~~Lv~~l~~~e~~~~ey~~a~m~fIN~lV~s~eDl~~RVhLR~Ef~~lGL~~iL~kLr~~e~~~lq~qi~---------- 316 (493)
..+++.+.... ..+...++...+..+..++++ |..+...|..+.|-++-...+..++++..
T Consensus 355 ~~L~~lL~~~~--~~~v~~~a~~~L~nLa~~~~~-------~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~ 425 (644)
T 2z6h_A 355 PVVVKLLHPPS--HWPLIKATVGLIRNLALCPAN-------HAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVE 425 (644)
T ss_dssp HHHHHTTSTTC--CHHHHHHHHHHHHHHTTSGGG-------HHHHHHTTHHHHHHHHHHHHHHHHTTC----------CC
T ss_pred HHHHHHhCccC--chHHHHHHHHHHHHHccCHHH-------HHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcc
Confidence 56666666532 233344444444445554442 24566777666555543333333333111
Q ss_pred hhhhhhhHHHHHHHHHhhhhccccchhhhhhHHHHHh-hchHHHHhhhhcccchhHHHHHHHhhhhhccCccccchhhhh
Q psy8949 317 CLYFYRVQVACMQFINIVVHSVEDMNFRVHLQYEFSR-LGLDSYLDKLRHTESEELQVACMQFINIVVHSVEDMNFRVHL 395 (493)
Q Consensus 317 ~~~~~e~~~~~~~~~~al~~~~~d~d~r~~~r~~~~~-~~~~~~v~~L~~~~n~~~~v~~m~fiN~li~~~~dl~~R~hL 395 (493)
.-..+++..++..-+..+.... ..|+.+.. -+...+++-|++....-.+.++..+-|. ...+ ..
T Consensus 426 ~~~~~~v~~~a~~aL~~La~~~-------~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l-~~~~-------~~ 490 (644)
T 2z6h_A 426 GVRMEEIVEGCTGALHILARDV-------HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCEL-AQDK-------EA 490 (644)
T ss_dssp SSCHHHHHHHHHHHHHHHTTSH-------HHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHH-HTSH-------HH
T ss_pred cccHHHHHHHHHHHHHHHhcCH-------HHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHH-HcCH-------HH
Confidence 0012334444444444444321 12333322 2345566666554333334455555553 2221 23
Q ss_pred HHHHhhcCchHHHhhhccCCcHHHHH
Q psy8949 396 QYEFSRLGLDSYLDKLRHTESEELQE 421 (493)
Q Consensus 396 r~Ef~~lgl~~~l~~lr~~e~~~L~~ 421 (493)
+..+...|..+.|.++-..+++++..
T Consensus 491 ~~~i~~~g~l~~L~~ll~~~~~~vr~ 516 (644)
T 2z6h_A 491 AEAIEAEGATAPLTELLHSRNEGVAT 516 (644)
T ss_dssp HHHHHHTTCHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHcCChhHHHHHHcCCCHHHHH
Confidence 55666788888888888888887754
No 38
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=28.55 E-value=1.4e+02 Score=30.42 Aligned_cols=124 Identities=10% Similarity=0.041 Sum_probs=0.0
Q ss_pred HHHHHhcchhhH--------HHHhcchhhHHHHHHhhcCCChhHHHHHHHHHHHHhcccCchHHHHHHHHhhHhhccCCc
Q psy8949 173 CLRAIMNNKYGL--------NMVIKHTEAINSIALSLMHKSLRTKALVLELLAAICLVTGGHEIILAAFDNFKEICQESK 244 (493)
Q Consensus 173 CLkAIMN~~~Gl--------~~vl~~~~~i~~Ia~sL~s~~~~tr~lVlELLaalCl~~~Gh~~VL~A~d~~k~~~~E~~ 244 (493)
|..||.|-..|- +.++....++..|..-|.+++.++++.+.-+|..++..+..+..|-+ +
T Consensus 304 a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~~i~~------------~ 371 (457)
T 1xm9_A 304 CAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGN------------Q 371 (457)
T ss_dssp HHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHH------------H
T ss_pred HHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHHHHHH------------h
Q ss_pred chHHHHhHhhccccc---cHHHHHHHHHHhhHHhcCCCChhhHHHHHHHHHHCCChHHHHhhhhhh-hhhhhhH
Q psy8949 245 RFETLMDYFMNYEVF---HIEFMVACMQFINIVVHSVEDMNFRVHLQYEFSRLGLDSYLDKLRHTE-TLLLHCY 314 (493)
Q Consensus 245 RF~~Lv~~l~~~e~~---~~ey~~a~m~fIN~lV~s~eDl~~RVhLR~Ef~~lGL~~iL~kLr~~e-~~~lq~q 314 (493)
-..++++.+...+.. ..+...+++..++.++...++ ....+..+|-.+.|..|-..+ +..+.+.
T Consensus 372 ~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~------~~~~i~~~g~l~~L~~L~~~~~~~~i~~~ 439 (457)
T 1xm9_A 372 VFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQ------LAKQYFSSSMLNNIINLCRSSASPKAAEA 439 (457)
T ss_dssp THHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTH------HHHHHCCHHHHHHHHHHHHCTTCHHHHHH
T ss_pred hhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHH------HHHHHHHcCCHHHHHHHHcCCCcHHHHHH
No 39
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=27.70 E-value=79 Score=31.41 Aligned_cols=64 Identities=14% Similarity=0.200 Sum_probs=44.5
Q ss_pred chHHHHHHHHHHhcchhhHHHHhcchhhHHHH-HHhhcCCChhHHHHHHHHHHHHhc---cc-----CchHHHHHHHHhh
Q psy8949 166 DIHVCILCLRAIMNNKYGLNMVIKHTEAINSI-ALSLMHKSLRTKALVLELLAAICL---VT-----GGHEIILAAFDNF 236 (493)
Q Consensus 166 d~~~cI~CLkAIMN~~~Gl~~vl~~~~~i~~I-a~sL~s~~~~tr~lVlELLaalCl---~~-----~Gh~~VL~A~d~~ 236 (493)
|..+.++|+|.+--..+ |+..|..+ ..+|. .+...|..+..||..++- ++ .|...|++.++..
T Consensus 26 d~~Ea~~ci~el~~p~~-------~~~~v~~~i~~~le-~~~~~re~~~~Ll~~L~~~~~is~~~~~~Gf~~~~~~l~Dl 97 (339)
T 1ug3_A 26 DMKEAVQCVQELASPSL-------LFIFVRHGVESTLE-RSAIAREHMGQLLHQLLCAGHLSTAQYYQGLYEILELAEDM 97 (339)
T ss_dssp CHHHHHHHHHTTCCGGG-------HHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCccc-------HHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhChHh
Confidence 55689999999842211 45555444 44444 456899999999999983 22 5888888888777
Q ss_pred H
Q psy8949 237 K 237 (493)
Q Consensus 237 k 237 (493)
.
T Consensus 98 ~ 98 (339)
T 1ug3_A 98 E 98 (339)
T ss_dssp T
T ss_pred h
Confidence 5
No 40
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=26.62 E-value=96 Score=30.76 Aligned_cols=65 Identities=15% Similarity=0.231 Sum_probs=44.2
Q ss_pred cchHHHHHHHHHHhcchhhHHHHhcchhhHHH-HHHhhcCCChhHHHHHHHHHHHHhc--cc-----CchHHHHHHHHhh
Q psy8949 165 DDIHVCILCLRAIMNNKYGLNMVIKHTEAINS-IALSLMHKSLRTKALVLELLAAICL--VT-----GGHEIILAAFDNF 236 (493)
Q Consensus 165 dd~~~cI~CLkAIMN~~~Gl~~vl~~~~~i~~-Ia~sL~s~~~~tr~lVlELLaalCl--~~-----~Gh~~VL~A~d~~ 236 (493)
.|..+++.|++.+ |... -++..|.. |..+|+. +.+-|.++..||+.+|- ++ .|...+++.++.+
T Consensus 17 ~d~~Ea~~~l~el-~~p~------~~~~~v~~~i~~aldr-~~~erE~~s~LLs~L~~~~ls~~~i~~gf~~ll~~ldDl 88 (307)
T 2zu6_B 17 GDTNEVAEMLRDL-NLGE------MKSGVPVLAVSLALEG-KASHREMTSKLLSDLCGTVMSTTDVEKSFDKLLKDLPEL 88 (307)
T ss_dssp CCHHHHHHHHHTT-CCGG------GGGGHHHHHHHHHHTS-CHHHHHHHHHHHHHHHHHTBCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHh-CCcc------hHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhHh
Confidence 4678899999985 3321 24444444 5556665 48899999999999982 22 4677777777666
Q ss_pred H
Q psy8949 237 K 237 (493)
Q Consensus 237 k 237 (493)
.
T Consensus 89 ~ 89 (307)
T 2zu6_B 89 A 89 (307)
T ss_dssp H
T ss_pred c
Confidence 5
No 41
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=26.00 E-value=3.7e+02 Score=24.94 Aligned_cols=93 Identities=10% Similarity=0.053 Sum_probs=53.9
Q ss_pred cchHHHHHHHHHHhcch---hhHHHHhc--chhhHHHHH-HhhcCCChhHHHHHHHHHHHHhcccCchHHHHHHHHhhHh
Q psy8949 165 DDIHVCILCLRAIMNNK---YGLNMVIK--HTEAINSIA-LSLMHKSLRTKALVLELLAAICLVTGGHEIILAAFDNFKE 238 (493)
Q Consensus 165 dd~~~cI~CLkAIMN~~---~Gl~~vl~--~~~~i~~Ia-~sL~s~~~~tr~lVlELLaalCl~~~Gh~~VL~A~d~~k~ 238 (493)
--+...+.|+.++...- .|...... -...+..|. .+|.++..++|..+++.+..++........+++.+..
T Consensus 70 ~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~~~e~l~~--- 146 (278)
T 4ffb_C 70 VAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQSVELVIP--- 146 (278)
T ss_dssp HHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHHHHHHHGG---
T ss_pred HHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH---
Confidence 34456788888887531 11111111 111233333 5678889999999999888877655444555554432
Q ss_pred hccCCcchHHHHhHhhccccccHHHHHHHHHHhhHHhc
Q psy8949 239 ICQESKRFETLMDYFMNYEVFHIEFMVACMQFINIVVH 276 (493)
Q Consensus 239 ~~~E~~RF~~Lv~~l~~~e~~~~ey~~a~m~fIN~lV~ 276 (493)
++.+ -+.....+|+.++..++.
T Consensus 147 -------------~l~~---Knpkv~~~~l~~l~~~l~ 168 (278)
T 4ffb_C 147 -------------FFEK---KLPKLIAAAANCVYELMA 168 (278)
T ss_dssp -------------GGGC---SCHHHHHHHHHHHHHHHH
T ss_pred -------------HHhc---cCHHHHHHHHHHHHHHHH
Confidence 2332 244557788888876665
No 42
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=21.73 E-value=3e+02 Score=30.96 Aligned_cols=124 Identities=11% Similarity=0.083 Sum_probs=71.4
Q ss_pred HHHHHHHHHhcchhhHHHHhcchhhHHHHHHhhcCCChhHHHHHHHHHHHHhcccCchHHHHHHHHhhHhhccCCcchHH
Q psy8949 169 VCILCLRAIMNNKYGLNMVIKHTEAINSIALSLMHKSLRTKALVLELLAAICLVTGGHEIILAAFDNFKEICQESKRFET 248 (493)
Q Consensus 169 ~cI~CLkAIMN~~~Gl~~vl~~~~~i~~Ia~sL~s~~~~tr~lVlELLaalCl~~~Gh~~VL~A~d~~k~~~~E~~RF~~ 248 (493)
+.+.+|..|....-+....+-...++..|...|.++++.+++.++++++.++..++....+. ...++...
T Consensus 600 eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v----------~~~g~l~~ 669 (810)
T 3now_A 600 ESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFE----------GNNDRVKF 669 (810)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHH----------SSSSHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHH----------hccCcHHH
Confidence 34555555544332333333335678899999999999999999999999987543222211 12467888
Q ss_pred HHhHhhccccccHHHH-HHHHHHhhHHhc-CCCChhhHHHHHHHHHHCCChHHHHhhhhhhhhhhh
Q psy8949 249 LMDYFMNYEVFHIEFM-VACMQFINIVVH-SVEDMNFRVHLQYEFSRLGLDSYLDKLRHTETLLLH 312 (493)
Q Consensus 249 Lv~~l~~~e~~~~ey~-~a~m~fIN~lV~-s~eDl~~RVhLR~Ef~~lGL~~iL~kLr~~e~~~lq 312 (493)
|+..+... ..+.+ .||..+-| +.. +++ ..|.-+...|..+.|-.|-...+..++
T Consensus 670 Lv~LL~s~---d~~vq~~Aa~ALan-Lt~~s~~------~~~~ii~~~g~I~~Lv~LL~s~d~~vq 725 (810)
T 3now_A 670 LALLCEDE---DEETATACAGALAI-ITSVSVK------CCEKILAIASWLDILHTLIANPSPAVQ 725 (810)
T ss_dssp HHHGGGCS---SHHHHHHHHHHHHH-HHHHCHH------HHHHHHTSTTHHHHHHHHHTCSSHHHH
T ss_pred HHHHhcCC---CHHHHHHHHHHHHH-HhCCCHH------HHHHHHHHcCCHHHHHHHHCCCCHHHH
Confidence 88888763 22333 34444444 433 322 123333325666666555555555554
Done!