RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8949
(493 letters)
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein
complex, armadillo repeats, structural protein; 2.10A
{Mus musculus}
Length = 233
Score = 136 bits (344), Expect = 1e-37
Identities = 45/161 (27%), Positives = 77/161 (47%), Gaps = 6/161 (3%)
Query: 150 KRSRHAARLNMGDPKDDIHVCILCLRAIMNNKYGLNMVIKHTEAINSIALSLMHKSLRTK 209
+ + + H I CL+A MNNK+G+ +++ E I + ++
Sbjct: 54 RLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMM 113
Query: 210 ALVLELLAAICLV---TGGHEIILAAFDNFKEICQESKRFETLMDYFMNYEVFHIEFMVA 266
+LL+A+C++ +E +L A E E +RF+ L+D + I V
Sbjct: 114 IDAAKLLSALCILPQPEDMNERVLEAMTERAE-MDEVERFQPLLDGLKSGT--SIALKVG 170
Query: 267 CMQFINIVVHSVEDMNFRVHLQYEFSRLGLDSYLDKLRHTE 307
C+Q IN ++ E+++FRVH++ E RLGL L +LR E
Sbjct: 171 CLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIE 211
Score = 70.2 bits (171), Expect = 6e-14
Identities = 25/66 (37%), Positives = 42/66 (63%)
Query: 360 LDKLRHTESEELQVACMQFINIVVHSVEDMNFRVHLQYEFSRLGLDSYLDKLRHTESEEL 419
LD L+ S L+V C+Q IN ++ E+++FRVH++ E RLGL L +LR E+E++
Sbjct: 156 LDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDM 215
Query: 420 QERVQA 425
+ ++
Sbjct: 216 KVQLCV 221
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO
proteins, formins, armadillo repeat, G-protein, GTPase,
alternative splicing; HET: GNP; 2.70A {Mus musculus}
PDB: 1z2c_B*
Length = 383
Score = 119 bits (299), Expect = 6e-30
Identities = 45/161 (27%), Positives = 77/161 (47%), Gaps = 6/161 (3%)
Query: 150 KRSRHAARLNMGDPKDDIHVCILCLRAIMNNKYGLNMVIKHTEAINSIALSLMHKSLRTK 209
+ + + H I CL+A MNNK+G+ +++ E I + ++
Sbjct: 120 RLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMM 179
Query: 210 ALVLELLAAICLVT---GGHEIILAAFDNFKEICQESKRFETLMDYFMNYEVFHIEFMVA 266
+LL+A+C++ +E +L A E E +RF+ L+D + I V
Sbjct: 180 IDAAKLLSALCILPQPEDMNERVLEAMTERAE-MDEVERFQPLLDGLKSGT--SIALKVG 236
Query: 267 CMQFINIVVHSVEDMNFRVHLQYEFSRLGLDSYLDKLRHTE 307
C+Q IN ++ E+++FRVH++ E RLGL L +LR E
Sbjct: 237 CLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIE 277
Score = 59.1 bits (142), Expect = 1e-09
Identities = 25/66 (37%), Positives = 42/66 (63%)
Query: 360 LDKLRHTESEELQVACMQFINIVVHSVEDMNFRVHLQYEFSRLGLDSYLDKLRHTESEEL 419
LD L+ S L+V C+Q IN ++ E+++FRVH++ E RLGL L +LR E+E++
Sbjct: 222 LDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDM 281
Query: 420 QERVQA 425
+ ++
Sbjct: 282 KVQLCV 287
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation,
cytoskeleton, structural; 2.4A {Mus musculus} SCOP:
a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Length = 386
Score = 116 bits (292), Expect = 5e-29
Identities = 46/166 (27%), Positives = 79/166 (47%), Gaps = 6/166 (3%)
Query: 149 KKRSRHAARLNMGDPKDDIHVCILCLRAIMNNKYGLNMVIKHTEAINSIALSLMHKSLRT 208
K+ + + H I CL+A MNNK+G+ +++ E I + ++
Sbjct: 57 KRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNM 116
Query: 209 KALVLELLAAICLVT---GGHEIILAAFDNFKEICQESKRFETLMDYFMNYEVFHIEFMV 265
+LL+A+C++ +E +L A E E +RF+ L+D + I V
Sbjct: 117 MIDAAKLLSALCILPQPEDMNERVLEAMTERAE-MDEVERFQPLLDGLKSGT--SIALKV 173
Query: 266 ACMQFINIVVHSVEDMNFRVHLQYEFSRLGLDSYLDKLRHTETLLL 311
C+Q IN ++ E+++FRVH++ E RLGL L +LR E +
Sbjct: 174 GCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDM 219
Score = 59.9 bits (144), Expect = 6e-10
Identities = 37/181 (20%), Positives = 73/181 (40%), Gaps = 15/181 (8%)
Query: 321 YRVQVACMQFINIVVHSVEDMNFRVHLQYEFSRLGLDSYLDKLRHTESEELQVACMQFIN 380
++V C+Q IN ++ E+++FRVH++ E RLGL L +LR E+E+++V F
Sbjct: 169 IALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMKVQLCVFDE 228
Query: 381 IVVHSVEDMNFR---VHLQYEFSRLGLDSYLDKLRHTESEE---------LQERVQAKDP 428
D+ R + ++ + L+ ++ +++E L R +
Sbjct: 229 QGDEDFFDLKGRLDDIRMEMDDFGEVFQIILNTVKDSKAEPHFLSILQHLLLVRNDYEAR 288
Query: 429 PAHYLSKLRTYLDPKASRS---SRVQISAYLDNVFDVAALMEDSETKTAALEKVAELEDE 485
P +Y ++ + ++ + M D + K ELE +
Sbjct: 289 PQYYKLIEECVSQIVLHKNGTDPDFKCRHLQIDIERLVDQMIDKTKVEKSEAKATELEKK 348
Query: 486 L 486
L
Sbjct: 349 L 349
Score = 57.2 bits (137), Expect = 5e-09
Identities = 25/80 (31%), Positives = 42/80 (52%)
Query: 346 HLQYEFSRLGLDSYLDKLRHTESEELQVACMQFINIVVHSVEDMNFRVHLQYEFSRLGLD 405
LD L+ S L+V C+Q IN ++ E+++FRVH++ E RLGL
Sbjct: 146 ERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLH 205
Query: 406 SYLDKLRHTESEELQERVQA 425
L +LR E+E+++ ++
Sbjct: 206 QVLQELREIENEDMKVQLCV 225
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding
domain, ubiquitin-superfold, armadillo repeats,
actin-binding, coiled coil; 2.30A {Homo sapiens}
Length = 339
Score = 83.7 bits (206), Expect = 7e-18
Identities = 18/138 (13%), Positives = 46/138 (33%), Gaps = 2/138 (1%)
Query: 168 HVCILCLRAIMNNKYGLNMVIKHTEAINSIALSLMHKSLRTKALVLELLAAICLVT-GGH 226
+ L +M G+ V+ H++ I + S L+LL +
Sbjct: 178 SYILRALGQLMLFVDGMLGVVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNA 237
Query: 227 EIILAAFDNFKEICQESKRFETLMDYFMNYEVFHIEFMVACMQFINIVVHSVEDMNFRVH 286
+ + A ++ + L+ E +V + IN + ++ D +
Sbjct: 238 PLFIRAVNSVASTTGA-PPWANLVSILEEKNGADPELLVYTVTLINKTLAALPDQDSFYD 296
Query: 287 LQYEFSRLGLDSYLDKLR 304
+ + G+++ + +
Sbjct: 297 VTDALEQQGMEALVQRHL 314
Score = 40.6 bits (94), Expect = 8e-04
Identities = 8/55 (14%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Query: 369 EELQVACMQFINIVVHSVEDMNFRVHLQYEFSRLGLDSYLDKL--RHTESEELQE 421
EL V + IN + ++ D + + + G+++ + + +L+
Sbjct: 271 PELLVYTVTLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRT 325
Score = 38.6 bits (89), Expect = 0.003
Identities = 6/58 (10%), Positives = 23/58 (39%), Gaps = 2/58 (3%)
Query: 323 VQVACMQFINIVVHSVEDMNFRVHLQYEFSRLGLDSYLDKL--RHTESEELQVACMQF 378
+ V + IN + ++ D + + + G+++ + + +L+ + +
Sbjct: 273 LLVYTVTLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQLVLY 330
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 69.5 bits (169), Expect = 1e-12
Identities = 75/481 (15%), Positives = 146/481 (30%), Gaps = 158/481 (32%)
Query: 5 ILWVKEFLNDDNHGLDSLIEYLSFRLVMMRHEYRIADSKHLSEETLNTSSEKCDKPPYRW 64
I W+ N ++ ++++E L L + + + S H S L S +
Sbjct: 184 IFWLN-LKNCNSP--ETVLEMLQKLLYQIDPNW-TSRSDHSSNIKLRIHSIQ------AE 233
Query: 65 VKEFLNDDNHG-----LD-----SLIEYLSFR---LVMMRHEYRIADS------KHLSEE 105
++ L + L + L+ R + ++ D H+S +
Sbjct: 234 LRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFK-QVTDFLSAATTTHISLD 292
Query: 106 TLN---TSSETEN------GLPASTNPP-ANVISPQSLGHQRPSL---DLASSPSVKKRS 152
+ T E ++ P +P+ L S+ + +
Sbjct: 293 HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL-----SIIAESIRDGLATWDNW 347
Query: 153 RH----------AARLNMGDPK-------------DDIHV-----CIL-------CLRAI 177
+H + LN+ +P H+ ++ + +
Sbjct: 348 KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVV 407
Query: 178 MNNKYGLNMVIKH----TEAINSIALSLMHKSLRTKALVLELLAAICLVTGGHEIILAAF 233
+N + ++V K T +I SI L L K AL H I+ +
Sbjct: 408 VNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL--------------HRSIVDHY 453
Query: 234 DNFKEICQESKRFETLMDYFMNYEVFHIEFMVACMQFINIVVHSVEDMNFRVHLQYEFSR 293
+ K + L YF ++ H + E M F
Sbjct: 454 NIPKTFDSDDLIPPYLDQYFYSHIGHH---LKNIEH--------PERMT-------LFRM 495
Query: 294 LGLD-SYLD-KLRHTETLLLHCY-----LLCLYFYRVQVACMQFINIVVHSVEDMNFRVH 346
+ LD +L+ K+RH T L L FY+ +I
Sbjct: 496 VFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYK------PYI-----------CDND 538
Query: 347 LQYEFSRLGLDSYLDKLRHTESEELQVACMQFINIVVHSVEDMNFRVHLQYEFSRLGLDS 406
+YE RL +++ LD L E + C ++ +++ R+ L E + ++
Sbjct: 539 PKYE--RL-VNAILDFLPKIEE---NLICSKYTDLL---------RIALMAEDEAIFEEA 583
Query: 407 Y 407
+
Sbjct: 584 H 584
Score = 62.6 bits (151), Expect = 2e-10
Identities = 92/618 (14%), Positives = 180/618 (29%), Gaps = 211/618 (34%)
Query: 3 ILILWVKEFLND-D-NHGLDSLIEYLSFR----LVMMRHE----YRIADS-KHLSEETLN 51
IL ++ F+++ D D LS ++M + R+ + EE +
Sbjct: 21 ILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQ 80
Query: 52 TSSEKCDKPPYRWVKE-FLNDDNHGLDSLIEYLSFRLVMM--------RHEYRIADSKHL 102
E+ + Y+++ + Y+ R + + R+ L
Sbjct: 81 KFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKL 140
Query: 103 SEETLNTSSETE---NGLPAS----------------TNPPANVI--------SPQSLGH 135
+ L +G+ S + SP+++
Sbjct: 141 RQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE 200
Query: 136 QRPSLDLASSPSVKKRSRHAA--RLNMGDPKDDI--------HV-CILCLRAIMNNKYGL 184
L P+ RS H++ +L + + ++ + C+L L + N K
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAK--- 257
Query: 185 NMVIKH----------------TEAINS-----IALSLMHKSLRTKALVLELLAAI---- 219
T+ +++ I+L +L T V LL
Sbjct: 258 --AWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL-TPDEVKSLLLKYLDCR 314
Query: 220 --CL---VTGGHEIILAAF-----------DNFKEICQESKRFETLMD------------ 251
L V + L+ DN+K + + T+++
Sbjct: 315 PQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV--NCDKLTTIIESSLNVLEPAEYR 372
Query: 252 -YFMNYEVF----HIEFMVACMQFINIVVHSVEDMNFRVHLQYEFSRLGLDSYLDKLRHT 306
F VF HI ++ + + +++ V + + + + L ++K
Sbjct: 373 KMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVV-----VN-KLHKYSL---VEKQPKE 423
Query: 307 ETLLLH-CYLLCLYFYRVQVACMQFINIVVHS--VEDMNFRVHLQYE-FSRLGLDSY--- 359
T+ + YL +V++ +H V+ N + LD Y
Sbjct: 424 STISIPSIYLE----LKVKLENEY----ALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYS 475
Query: 360 -----LDKLRHTESEELQVACMQFINIVVHSVEDMNFRVHLQYEFSRLGLD-SYLD-KLR 412
L + H E L F + LD +L+ K+R
Sbjct: 476 HIGHHLKNIEHPERMTL---------------------------FRMVFLDFRFLEQKIR 508
Query: 413 HTESEELQERVQAKDPPAHYLSKLRTYL------DPKASRSSRVQISAYLDNVFDVA--- 463
H + A + L +L+ Y DPK R ++A LD + +
Sbjct: 509 HDSTA-----WNASGSILNTLQQLKFYKPYICDNDPKYER----LVNAILDFLPKIEENL 559
Query: 464 -----------ALMEDSE 470
ALM + E
Sbjct: 560 ICSKYTDLLRIALMAEDE 577
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 50.4 bits (120), Expect = 1e-06
Identities = 49/360 (13%), Positives = 114/360 (31%), Gaps = 103/360 (28%)
Query: 192 EAINSIALSLMHKSLRT----------KALVL--ELLAAICLVTGGHEI---------IL 230
+A ++ L+L H SL A L + + T G ++
Sbjct: 2 DAYSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELV 61
Query: 231 AAFDNF---KEICQESKRFETLMDYFMNYEVFHIEFMVACMQFINIVVHSVEDMNFRVHL 287
F + + +F+ +++ + F + ++ +I H+ L
Sbjct: 62 GKFLGYVSSLVEPSKVGQFDQVLNLCLTE--FENCY----LEGNDI--HA-----LAAKL 108
Query: 288 QYEFSRLGLDSYLDKLRHTETLLLHCYLLCLYFYRVQVACMQFINIVVHS-----VEDMN 342
L+ +T L+ L + ++ + + +S V + N
Sbjct: 109 ---------------LQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGN 153
Query: 343 FRVHLQYEFSRLG----LDSYLDKLR------HTESEELQVACMQFINIVVHSVEDMNFR 392
++ F G D Y ++LR H +L + ++ ++ + D
Sbjct: 154 AQLVAI--F---GGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKV 208
Query: 393 VHLQYEFSRLGLD--SYLDKLRHTESEE----------LQERVQAKDPPAHYLSKLRTY- 439
F++ GL+ +L+ +T ++ L +Q AHY+ +
Sbjct: 209 ------FTQ-GLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQL----AHYVVTAKLLG 257
Query: 440 LDPKASRSSRVQISAYLDNVFDVAALMEDSETKTAALEKVAELEDEL------GHRTFPP 493
P RS + + + A + ++++ + V + L + +P
Sbjct: 258 FTPGELRSYLKGATGHSQGLV-TAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPN 316
Score = 35.4 bits (81), Expect = 0.056
Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 13/71 (18%)
Query: 100 KHLSEETLNTSSETENG-LPAS-------TNPPAN-VIS--PQSLGHQRPSLDLASSPSV 148
+L++E + N LPA N N V+S PQSL +L A +PS
Sbjct: 342 SNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSG 401
Query: 149 KKRSR--HAAR 157
+SR + R
Sbjct: 402 LDQSRIPFSER 412
Score = 34.3 bits (78), Expect = 0.11
Identities = 48/345 (13%), Positives = 100/345 (28%), Gaps = 108/345 (31%)
Query: 24 EYLSFRLVMMRHEYR--IADSKHLSEETLNT--SSEKCDKPPYRW---VKEFLNDDNH-- 74
+Y L + Y + D S ETL+ + + + + E+L + ++
Sbjct: 168 DYFE-ELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTP 226
Query: 75 ---------------GLDSLIEYLSFRLVM------MRHEYR--------------IADS 99
G+ L Y+ ++ +R + IA++
Sbjct: 227 DKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAET 286
Query: 100 KHLSEETLNTSS------------ETENGLPASTNPPANVISPQSLGHQRPSLDLA-SSP 146
S E+ S P ++ PP+ + PS L+ S+
Sbjct: 287 D--SWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNL 344
Query: 147 SVKKRSRHAARLNMGDPKDDIHVCILCLRAIMNNKYGLNMVIK-HTEAINSIALSLMHKS 205
+ ++ + + N P V I +++N N+V+ + S
Sbjct: 345 TQEQVQDYVNKTNSHLPAGK-QVEI----SLVNGA--KNLVVSGPPQ------------S 385
Query: 206 LRTKALVLELLAAICLVTGGHEIILAAFDNFK-EICQESKRFETLMDYFMNYEV-FHIEF 263
L L L A + D + + +F F+ FH
Sbjct: 386 LYGLNLTLRKAKA-----------PSGLDQSRIPFSERKLKFSNR---FLPVASPFHSHL 431
Query: 264 MVACMQFINIVVHSVEDMNFRVHLQYEFSRLGLDSYLDKLRHTET 308
+V I +D+ + ++ + + + Y T
Sbjct: 432 LVPASDLI------NKDLV-KNNVSFNAKDIQIPVY-----DTFD 464
Score = 33.5 bits (76), Expect = 0.21
Identities = 25/159 (15%), Positives = 46/159 (28%), Gaps = 61/159 (38%)
Query: 1 MSILILWVKEFLNDDN-----HGLDSLIEY---------LSF----RLVMMR-------- 34
+ + L + H SL EY +S +V R
Sbjct: 1741 KAAFEDLKSKGLIPADATFAGH---SLGEYAALASLADVMSIESLVEVVFYRGMTMQVAV 1797
Query: 35 -------HEYRIAD------SKHLSEETLNTSSEKCDKPPYRWVKEFLND---------- 71
Y + + S+E L E+ K W+ E +N
Sbjct: 1798 PRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRT-GWLVEIVNYNVENQQYVAA 1856
Query: 72 -DNHGLDSLIEYLSF------RLVMMRHEYRIADSK-HL 102
D LD++ L+F ++ ++ + + + HL
Sbjct: 1857 GDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEGHL 1895
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 32.2 bits (73), Expect = 0.51
Identities = 41/198 (20%), Positives = 63/198 (31%), Gaps = 57/198 (28%)
Query: 349 YEFSRLGLDSYLDKLRHTES--EELQVA-----------CMQFINIVVHSVEDMNFRVHL 395
Y S+L L++ ++ H+ES +L V M NI+ +E M R
Sbjct: 640 YSESKLSLETLFNR-WHSESWANQLTVCGAIIGWTRGTGLMSANNIIAEGIEKMGVRTFS 698
Query: 396 QYE--FSRLGL----------------D------------SYLDKLRHTESEELQERVQA 425
Q E F+ LGL D + KLR E + R
Sbjct: 699 QKEMAFNLLGLLTPEVVELCQKSPVMADLNGGLQFVPELKEFTAKLRKELVETSEVRKAV 758
Query: 426 KDPPAHYLSKLRTYLDPKASRSSRVQISAYLDNVF-DVAALMEDSETKTAALEKVAELED 484
A + A +Q A + F ++ + + A LE + +LE
Sbjct: 759 SIETALEHKVVNGNSADAAYAQVEIQPRANIQLDFPELKPYKQVKQIAPAELEGLLDLER 818
Query: 485 --------ELG----HRT 490
E+G RT
Sbjct: 819 VIVVTGFAEVGPWGSART 836
>2fdr_A Conserved hypothetical protein; SAD, structural genomics,
agrobacter tumefaciens, HAD-superfamily hydrolase; 2.00A
{Agrobacterium tumefaciens str} SCOP: c.108.1.6
Length = 229
Score = 29.2 bits (66), Expect = 2.3
Identities = 6/83 (7%), Positives = 21/83 (25%), Gaps = 16/83 (19%)
Query: 176 AIMNNKYGLNMVIKHTEAINSIALSLMHKSLRTKALVLELLAA----ICLVTGG-HEIIL 230
+ ++ + + + + + + ++ V L+ C+ + +
Sbjct: 56 LQVESEASIPLSASLLDKSEKLLDMRLERDVKIIDGVKFALSRLTTPRCICSNSSSHRLD 115
Query: 231 AAFDNFKEICQESKRFETLMDYF 253
L YF
Sbjct: 116 MMLTKVG-----------LKPYF 127
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament,
structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Length = 93
Score = 26.4 bits (59), Expect = 7.3
Identities = 13/71 (18%), Positives = 32/71 (45%), Gaps = 13/71 (18%)
Query: 404 LDSYLDKLRH---------TESEELQERVQAKDPPAH--YLSKLRTYLDPKASRSSRVQI 452
+ +DK+R E E+L+ + +++ + + +LR +D + +RV++
Sbjct: 18 FANLIDKVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEV 77
Query: 453 SAYLDNVFDVA 463
DN+ +
Sbjct: 78 E--RDNLAEDI 86
>3u3y_B Three prime repair exonuclease 1; RNAse H fold, 3' exonuclease,
homodimer, hydrolase-DNA compl; HET: BU1; 2.28A {Mus
musculus} PDB: 3u6f_B*
Length = 314
Score = 27.8 bits (61), Expect = 7.7
Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 5/52 (9%)
Query: 262 EFMVACMQFINIVVHSVE--DMNFRVHLQYEFSRLGLDSYLDKLRHTETLLL 311
F+ Q +V H+ + D LQ E +RL S LD +++
Sbjct: 110 AFLQRQPQPCCLVAHNGDRYDFPL---LQTELARLSTPSPLDGTFCVDSIAA 158
>3mxm_B Three prime repair exonuclease 1; RNAse H-like fold, polyproline
type II helix, hydrolase-DNA; HET: DNA; 1.75A {Mus
musculus} PDB: 3mxj_B 2ioc_B 3mxi_B* 3b6o_A* 2o4g_A*
3b6p_A* 2o4i_A 2oa8_A
Length = 242
Score = 27.3 bits (60), Expect = 9.9
Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 5/52 (9%)
Query: 262 EFMVACMQFINIVVHSVE--DMNFRVHLQYEFSRLGLDSYLDKLRHTETLLL 311
F+ Q +V H+ + D LQ E +RL S LD +++
Sbjct: 110 AFLQRQPQPCCLVAHNGDRYDFPL---LQTELARLSTPSPLDGTFCVDSIAA 158
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.135 0.395
Gapped
Lambda K H
0.267 0.0498 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,415,570
Number of extensions: 437288
Number of successful extensions: 864
Number of sequences better than 10.0: 1
Number of HSP's gapped: 844
Number of HSP's successfully gapped: 31
Length of query: 493
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 396
Effective length of database: 3,993,456
Effective search space: 1581408576
Effective search space used: 1581408576
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.1 bits)