RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8949
         (493 letters)



>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1
           (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 343

 Score =  131 bits (332), Expect = 4e-35
 Identities = 46/162 (28%), Positives = 78/162 (48%), Gaps = 6/162 (3%)

Query: 149 KKRSRHAARLNMGDPKDDIHVCILCLRAIMNNKYGLNMVIKHTEAINSIALSLMHKSLRT 208
           K+        +      + H  I CL+A MNNK+G+  +++  E I  +  ++       
Sbjct: 55  KRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNM 114

Query: 209 KALVLELLAAICLVT---GGHEIILAAFDNFKEICQESKRFETLMDYFMNYEVFHIEFMV 265
                +LL+A+C++      +E +L A     E   E +RF+ L+D   +     I   V
Sbjct: 115 MIDAAKLLSALCILPQPEDMNERVLEAMTERAE-MDEVERFQPLLDGLKSGT--SIALKV 171

Query: 266 ACMQFINIVVHSVEDMNFRVHLQYEFSRLGLDSYLDKLRHTE 307
            C+Q IN ++   E+++FRVH++ E  RLGL   L +LR  E
Sbjct: 172 GCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIE 213



 Score = 68.0 bits (166), Expect = 4e-13
 Identities = 25/66 (37%), Positives = 42/66 (63%)

Query: 360 LDKLRHTESEELQVACMQFINIVVHSVEDMNFRVHLQYEFSRLGLDSYLDKLRHTESEEL 419
           LD L+   S  L+V C+Q IN ++   E+++FRVH++ E  RLGL   L +LR  E+E++
Sbjct: 158 LDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDM 217

Query: 420 QERVQA 425
           + ++  
Sbjct: 218 KVQLCV 223



 Score = 26.8 bits (59), Expect = 6.7
 Identities = 9/25 (36%), Positives = 13/25 (52%), Gaps = 3/25 (12%)

Query: 61 PYRWVKEFLNDDNHGLDSLIEYLSF 85
          P  WV+ F  +   GL SL++ L  
Sbjct: 35 PVSWVQTFGAE---GLASLLDILKR 56



 Score = 26.1 bits (57), Expect = 9.7
 Identities = 8/24 (33%), Positives = 13/24 (54%), Gaps = 3/24 (12%)

Query: 5  ILWVKEFLNDDNHGLDSLIEYLSF 28
          + WV+ F  +   GL SL++ L  
Sbjct: 36 VSWVQTFGAE---GLASLLDILKR 56


>d2p90a1 c.56.8.1 (A:6-274) Hypothetical protein Cgl1923
           {Corynebacterium glutamicum [TaxId: 1718]}
          Length = 269

 Score = 29.2 bits (65), Expect = 0.99
 Identities = 14/58 (24%), Positives = 21/58 (36%), Gaps = 3/58 (5%)

Query: 431 HYLSKLRTYLDPKASRSSRVQISAYLDNVFDVAALMEDSETKTAALEKVAELEDELGH 488
           HY+S       P A+      I+   D    + AL  D+E     L +  E   E+  
Sbjct: 198 HYVS---ASPYPAATLKLLQSIADSADLNLPLLALERDAEKVHRQLMEQTEESSEIQR 252


>d1zt2a1 d.264.1.1 (A:3-329) DNA primase small subunit PriA
           {Sulfolobus solfataricus [TaxId: 2287]}
          Length = 327

 Score = 28.1 bits (62), Expect = 2.9
 Identities = 20/107 (18%), Positives = 40/107 (37%), Gaps = 4/107 (3%)

Query: 383 VHSVEDMNFRVHLQYEFSRLGLDSYLDKLRHTESEELQERVQAKDPPAHYLSKLRTYLDP 442
           +   +DM  R   ++     G D+Y+  L  + SEEL++ +  ++ P H       Y  P
Sbjct: 25  LELPKDMELR---EFALQPFGSDTYVRHLSFSSSEELRDYLVNRNLPLHLFYSSARYQLP 81

Query: 443 KASRSSRVQ-ISAYLDNVFDVAALMEDSETKTAALEKVAELEDELGH 488
            A        + + L    D   L +    +   +   A + ++   
Sbjct: 82  SARNMEEKAWMGSDLLFDIDADHLCKLRSIRFCPVCGNAVVSEKCER 128


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.135    0.395 

Gapped
Lambda     K      H
   0.267   0.0640    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,788,420
Number of extensions: 82368
Number of successful extensions: 177
Number of sequences better than 10.0: 1
Number of HSP's gapped: 171
Number of HSP's successfully gapped: 11
Length of query: 493
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 404
Effective length of database: 1,185,626
Effective search space: 478992904
Effective search space used: 478992904
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.2 bits)