BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy895
(269 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DGK|A Chain A, Crystal Structure Of Phytoene Desaturase Crti From Pantoea
Ananatis
Length = 501
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 58/138 (42%), Gaps = 13/138 (9%)
Query: 126 PSSLDNTLSPPGHHVCLLFTQFTPYKLAG--DRDWTEEDKANYATNVFSSIEQ-YCPGFT 182
P D++L+P G C + P G + DWT E +F+ +EQ Y PG
Sbjct: 355 PCVTDSSLAPEG---CGSYYVLAPVPHLGTANLDWTVEGP-KLRDRIFAYLEQHYMPGLR 410
Query: 183 QDIVGYEILTPPDLEKEFGLTGGNIFHGALSLNQLLFNRPLPIQGPSSPFTLIPHLLLCG 242
+V + + TP D + G+ F L Q + RP + I +L L G
Sbjct: 411 SQLVTHRMFTPFDFRDQLNAYHGSAFSVEPVLTQSAWFRP------HNRDKTITNLYLVG 464
Query: 243 SGAHPGGGVCGAPGYIAA 260
+G HPG G+ G G A
Sbjct: 465 AGTHPGAGIPGVIGSAKA 482
>pdb|3ZUK|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Zinc
Metalloprotease Zmp1 In Complex With Inhibitor
pdb|3ZUK|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Zinc
Metalloprotease Zmp1 In Complex With Inhibitor
Length = 699
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 6/75 (8%)
Query: 158 WTEEDKANYATNVFSSIEQYCPGFTQDIVGYEILTPPDLEKEFGLTGGNIFH-GALSLNQ 216
WT++D+ +A + IEQY +D+V + PP ++ F + G NI G LS+
Sbjct: 552 WTDDDRTEFAARTKALIEQYHAYTPRDLVDHP--GPPHVQGAFTI-GENIGDLGGLSIAL 608
Query: 217 LLFNRPLPIQGPSSP 231
L + L + G +P
Sbjct: 609 LAYQ--LSLNGNPAP 621
>pdb|3VKH|A Chain A, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
pdb|3VKH|B Chain B, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
Length = 3367
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 4/77 (5%)
Query: 132 TLSPPGHHVCLLFTQFTPYKLAGDRDWTEEDKANYATNVFSSIEQYCPGFTQDIVGYEIL 191
+ P G + L Q+ K+ T +++ N+ S++ CP QD+ + +
Sbjct: 2311 VIDPSGQAMEFLMNQYADKKITK----TSFLDSSFMKNLESALRFGCPLLVQDVENIDPV 2366
Query: 192 TPPDLEKEFGLTGGNIF 208
P L KE GG I
Sbjct: 2367 LNPVLNKEIRKKGGRIL 2383
>pdb|3VKG|A Chain A, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein Motor
Domain
pdb|3VKG|B Chain B, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein Motor
Domain
Length = 3245
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 4/77 (5%)
Query: 132 TLSPPGHHVCLLFTQFTPYKLAGDRDWTEEDKANYATNVFSSIEQYCPGFTQDIVGYEIL 191
+ P G + L Q+ K+ T +++ N+ S++ CP QD+ + +
Sbjct: 2189 VIDPSGQAMEFLMNQYADKKITK----TSFLDSSFMKNLESALRFGCPLLVQDVENIDPV 2244
Query: 192 TPPDLEKEFGLTGGNIF 208
P L KE GG I
Sbjct: 2245 LNPVLNKEIRKKGGRIL 2261
>pdb|2NVK|X Chain X, Crystal Structure Of Thioredoxin Reductase From Drosophila
Melanogaster
Length = 488
Score = 27.7 bits (60), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 10/49 (20%)
Query: 162 DKANYATNVFSSIEQYCPGFTQDIVGYEILTPPDLEKEFGLTGGNIFHG 210
D + AT VF+ +E C G +++ D K+FG +FHG
Sbjct: 358 DYKDVATTVFTPLEYACVGLSEE----------DAVKQFGADEIEVFHG 396
>pdb|3DGH|A Chain A, Crystal Structure Of Drosophila Thioredoxin Reductase,
C-Terminal 8- Residue Truncation
pdb|3DGH|B Chain B, Crystal Structure Of Drosophila Thioredoxin Reductase,
C-Terminal 8- Residue Truncation
Length = 483
Score = 27.7 bits (60), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 10/49 (20%)
Query: 162 DKANYATNVFSSIEQYCPGFTQDIVGYEILTPPDLEKEFGLTGGNIFHG 210
D + AT VF+ +E C G +++ D K+FG +FHG
Sbjct: 358 DYKDVATTVFTPLEYACVGLSEE----------DAVKQFGADEIEVFHG 396
>pdb|3DH9|A Chain A, Crystal Structure Of Drosophila Thioredoxin Reductase,
Wild-Type
pdb|3DH9|B Chain B, Crystal Structure Of Drosophila Thioredoxin Reductase,
Wild-Type
Length = 482
Score = 27.7 bits (60), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 10/49 (20%)
Query: 162 DKANYATNVFSSIEQYCPGFTQDIVGYEILTPPDLEKEFGLTGGNIFHG 210
D + AT VF+ +E C G +++ D K+FG +FHG
Sbjct: 354 DYKDVATTVFTPLEYACVGLSEE----------DAVKQFGADEIEVFHG 392
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.141 0.452
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,946,998
Number of Sequences: 62578
Number of extensions: 381643
Number of successful extensions: 620
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 616
Number of HSP's gapped (non-prelim): 11
length of query: 269
length of database: 14,973,337
effective HSP length: 97
effective length of query: 172
effective length of database: 8,903,271
effective search space: 1531362612
effective search space used: 1531362612
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)