Query psy895
Match_columns 269
No_of_seqs 242 out of 1520
Neff 7.6
Searched_HMMs 46136
Date Fri Aug 16 23:44:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy895.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/895hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02734 crtI_fam phytoene de 100.0 4.8E-41 1E-45 324.1 21.6 249 3-269 220-494 (502)
2 TIGR02733 desat_CrtD C-3',4' d 100.0 3.1E-38 6.8E-43 303.9 18.4 242 3-266 233-491 (492)
3 TIGR02730 carot_isom carotene 100.0 2E-37 4.3E-42 298.7 19.7 246 3-268 230-493 (493)
4 KOG4254|consensus 100.0 9.4E-37 2E-41 280.9 20.3 253 1-267 263-546 (561)
5 COG1233 Phytoene dehydrogenase 100.0 2.4E-29 5.2E-34 242.3 15.0 240 1-267 223-481 (487)
6 PLN02612 phytoene desaturase 99.6 1.1E-14 2.4E-19 143.0 15.3 223 4-268 310-549 (567)
7 PRK07233 hypothetical protein; 99.4 1.8E-11 3.8E-16 115.4 17.1 222 3-268 199-432 (434)
8 TIGR02731 phytoene_desat phyto 99.2 3.4E-10 7.5E-15 108.1 13.4 218 3-264 214-453 (453)
9 TIGR02732 zeta_caro_desat caro 99.1 6.3E-10 1.4E-14 107.3 10.1 220 3-264 220-474 (474)
10 PLN02487 zeta-carotene desatur 99.0 8.6E-09 1.9E-13 101.4 15.4 224 3-266 296-552 (569)
11 TIGR03467 HpnE squalene-associ 99.0 9.9E-09 2.1E-13 96.0 14.0 211 3-265 198-419 (419)
12 PF01593 Amino_oxidase: Flavin 98.9 5.3E-10 1.2E-14 103.3 3.5 223 3-264 210-450 (450)
13 PRK11883 protoporphyrinogen ox 98.8 1.2E-07 2.7E-12 89.8 13.6 207 18-265 235-450 (451)
14 PRK07208 hypothetical protein; 98.3 9E-06 2E-10 78.2 13.1 228 2-266 218-460 (479)
15 TIGR00562 proto_IX_ox protopor 98.3 9E-06 2E-10 77.6 12.6 213 17-268 238-461 (462)
16 PRK12416 protoporphyrinogen ox 97.8 0.00016 3.5E-09 69.3 11.6 225 4-268 228-462 (463)
17 PLN02576 protoporphyrinogen ox 97.5 0.00073 1.6E-08 65.3 11.1 223 8-267 241-487 (496)
18 COG1232 HemY Protoporphyrinoge 97.4 0.0028 6.2E-08 60.7 13.0 218 4-264 217-443 (444)
19 PLN02268 probable polyamine ox 96.8 0.012 2.7E-07 55.8 11.1 220 7-267 202-434 (435)
20 PLN02676 polyamine oxidase 96.4 0.021 4.5E-07 55.5 9.8 37 232-268 434-474 (487)
21 PLN02568 polyamine oxidase 95.7 0.074 1.6E-06 52.4 10.0 34 234-267 498-535 (539)
22 TIGR02352 thiamin_ThiO glycine 94.6 1.5 3.2E-05 39.6 14.4 47 4-52 139-188 (337)
23 PLN02529 lysine-specific histo 94.4 0.42 9E-06 48.9 11.3 34 235-268 562-599 (738)
24 PLN02976 amine oxidase 94.0 0.48 1E-05 51.7 10.9 35 233-267 1147-1186(1713)
25 COG3349 Uncharacterized conser 93.7 0.12 2.5E-06 50.1 5.4 89 157-267 369-463 (485)
26 PLN02328 lysine-specific histo 93.1 0.88 1.9E-05 47.0 10.9 33 236-268 644-680 (808)
27 PLN03000 amine oxidase 91.4 1.6 3.6E-05 45.4 10.5 33 236-268 588-624 (881)
28 PTZ00363 rab-GDP dissociation 88.4 3.5 7.6E-05 39.7 9.6 50 3-53 233-286 (443)
29 COG1231 Monoamine oxidase [Ami 86.7 23 0.00049 34.2 13.7 226 5-267 208-447 (450)
30 COG0445 GidA Flavin-dependent 86.2 0.88 1.9E-05 44.8 4.0 28 24-52 125-153 (621)
31 COG2509 Uncharacterized FAD-de 82.9 2.9 6.4E-05 40.2 5.9 47 5-52 176-225 (486)
32 KOG0029|consensus 79.0 11 0.00023 37.1 8.5 99 158-268 357-460 (501)
33 TIGR00137 gid_trmFO tRNA:m(5)U 77.2 4.1 8.9E-05 39.2 5.0 32 230-265 323-364 (433)
34 TIGR00136 gidA glucose-inhibit 74.1 5.5 0.00012 40.0 5.0 52 3-55 97-152 (617)
35 PF01266 DAO: FAD dependent ox 73.4 3.3 7.1E-05 37.1 3.2 47 4-52 149-198 (358)
36 PF03197 FRD2: Bacteriophage F 70.7 7.6 0.00016 29.3 3.9 40 8-47 2-42 (102)
37 PF01134 GIDA: Glucose inhibit 69.5 10 0.00022 36.1 5.5 52 3-55 96-150 (392)
38 COG3380 Predicted NAD/FAD-depe 67.3 4 8.7E-05 37.0 2.2 30 236-266 299-330 (331)
39 PRK11259 solA N-methyltryptoph 66.9 18 0.00039 33.2 6.6 72 165-266 286-360 (376)
40 PRK05192 tRNA uridine 5-carbox 66.8 12 0.00027 37.6 5.8 48 4-52 102-152 (618)
41 PRK04176 ribulose-1,5-biphosph 66.6 5.9 0.00013 35.2 3.2 35 235-269 213-256 (257)
42 PF13496 DUF4120: Domain of un 64.1 7.4 0.00016 28.6 2.7 66 161-226 17-91 (95)
43 TIGR03378 glycerol3P_GlpB glyc 62.9 9.1 0.0002 36.7 3.9 44 4-47 265-313 (419)
44 KOG2311|consensus 60.6 9.3 0.0002 37.4 3.4 21 31-52 161-181 (679)
45 KOG2820|consensus 57.1 1.7E+02 0.0038 27.5 12.0 50 6-56 157-211 (399)
46 PLN02852 ferredoxin-NADP+ redu 57.0 11 0.00024 36.8 3.4 36 232-267 383-421 (491)
47 PF08491 SE: Squalene epoxidas 56.4 91 0.002 28.2 8.9 19 234-252 128-146 (276)
48 COG1635 THI4 Ribulose 1,5-bisp 55.3 8.8 0.00019 33.8 2.1 34 235-268 218-260 (262)
49 TIGR01816 sdhA_forward succina 52.1 16 0.00034 36.3 3.7 34 4-37 121-157 (565)
50 PRK06175 L-aspartate oxidase; 52.0 17 0.00038 34.7 3.8 36 230-265 339-385 (433)
51 TIGR00292 thiazole biosynthesi 51.6 15 0.00034 32.4 3.2 34 235-268 212-254 (254)
52 COG0654 UbiH 2-polyprenyl-6-me 50.2 2.1E+02 0.0046 26.5 11.4 44 3-47 105-153 (387)
53 TIGR00551 nadB L-aspartate oxi 48.9 19 0.00042 34.8 3.7 36 230-265 341-387 (488)
54 PRK09078 sdhA succinate dehydr 47.9 21 0.00046 35.6 3.9 33 5-37 152-188 (598)
55 PRK06134 putative FAD-binding 46.9 18 0.0004 35.9 3.2 34 4-37 219-255 (581)
56 PRK12842 putative succinate de 46.9 21 0.00046 35.4 3.7 35 5-39 217-254 (574)
57 PRK09077 L-aspartate oxidase; 46.1 21 0.00046 35.1 3.5 36 230-265 361-407 (536)
58 TIGR01377 soxA_mon sarcosine o 45.8 71 0.0015 29.2 6.8 46 4-52 147-195 (380)
59 PRK07395 L-aspartate oxidase; 45.8 16 0.00035 36.1 2.7 16 230-245 355-370 (553)
60 TIGR01292 TRX_reduct thioredox 45.4 21 0.00045 31.3 3.0 36 231-266 261-299 (300)
61 PRK12769 putative oxidoreducta 45.2 23 0.00051 35.7 3.7 38 231-269 613-653 (654)
62 TIGR01812 sdhA_frdA_Gneg succi 45.1 22 0.00048 35.1 3.5 47 5-52 132-186 (566)
63 PRK10262 thioredoxin reductase 44.7 24 0.00051 31.9 3.4 38 231-268 275-315 (321)
64 PF08331 DUF1730: Domain of un 44.4 63 0.0014 23.0 4.9 29 155-184 45-73 (78)
65 PRK00711 D-amino acid dehydrog 43.5 63 0.0014 30.1 6.2 49 4-54 203-254 (416)
66 PLN02815 L-aspartate oxidase 42.9 27 0.00059 35.0 3.7 34 230-265 385-431 (594)
67 PRK05675 sdhA succinate dehydr 42.9 27 0.00059 34.7 3.7 33 5-37 129-165 (570)
68 PLN00128 Succinate dehydrogena 42.7 29 0.00062 35.1 3.9 33 5-37 190-226 (635)
69 PLN02661 Putative thiazole syn 42.3 24 0.00052 33.1 3.0 34 235-268 286-328 (357)
70 PRK12839 hypothetical protein; 42.0 26 0.00057 34.8 3.5 33 6-38 218-254 (572)
71 PRK05329 anaerobic glycerol-3- 41.8 27 0.0006 33.4 3.4 36 232-267 377-420 (422)
72 PRK08071 L-aspartate oxidase; 41.1 29 0.00064 33.9 3.6 16 230-245 340-355 (510)
73 cd00080 HhH2_motif Helix-hairp 41.0 25 0.00054 25.0 2.3 29 239-268 15-43 (75)
74 PF00070 Pyr_redox: Pyridine n 41.0 42 0.00091 23.5 3.6 36 4-40 42-80 (80)
75 smart00279 HhH2 Helix-hairpin- 40.4 26 0.00057 21.3 2.0 26 240-266 10-35 (36)
76 TIGR01373 soxB sarcosine oxida 40.0 1.2E+02 0.0026 28.2 7.5 43 4-47 185-231 (407)
77 PTZ00139 Succinate dehydrogena 39.5 32 0.0007 34.6 3.7 33 5-37 169-205 (617)
78 TIGR03378 glycerol3P_GlpB glyc 38.6 31 0.00068 33.0 3.3 30 235-264 382-419 (419)
79 TIGR03329 Phn_aa_oxid putative 38.2 83 0.0018 30.1 6.2 45 4-52 185-232 (460)
80 PRK12831 putative oxidoreducta 38.0 32 0.0007 33.2 3.3 37 231-268 422-461 (464)
81 PRK09231 fumarate reductase fl 38.0 35 0.00076 34.0 3.7 36 230-265 366-412 (582)
82 PRK05945 sdhA succinate dehydr 37.8 36 0.00078 33.8 3.7 47 5-52 138-192 (575)
83 PRK08958 sdhA succinate dehydr 37.7 37 0.0008 33.9 3.8 33 5-37 146-182 (588)
84 PRK12810 gltD glutamate syntha 37.5 38 0.00083 32.6 3.7 38 231-268 426-465 (471)
85 PRK07121 hypothetical protein; 37.4 37 0.00081 32.8 3.7 36 4-39 179-218 (492)
86 PRK05335 tRNA (uracil-5-)-meth 36.6 38 0.00081 32.7 3.4 15 231-245 325-340 (436)
87 COG0579 Predicted dehydrogenas 36.0 37 0.0008 32.7 3.3 49 3-52 154-206 (429)
88 PRK06069 sdhA succinate dehydr 36.0 35 0.00076 33.9 3.3 42 6-47 141-191 (577)
89 KOG1593|consensus 35.8 47 0.001 29.9 3.6 38 164-210 286-323 (349)
90 COG3324 Predicted enzyme relat 35.5 39 0.00084 26.9 2.8 35 7-41 84-119 (127)
91 COG1206 Gid NAD(FAD)-utilizing 35.4 32 0.0007 32.2 2.6 30 235-265 334-369 (439)
92 PRK12843 putative FAD-binding 35.0 41 0.0009 33.4 3.6 34 233-266 527-571 (578)
93 TIGR01176 fum_red_Fp fumarate 34.8 39 0.00084 33.7 3.4 36 230-265 365-411 (580)
94 PRK08274 tricarballylate dehyd 34.8 37 0.00081 32.4 3.2 34 233-266 416-460 (466)
95 PRK13984 putative oxidoreducta 34.8 34 0.00073 34.1 3.0 37 231-268 564-602 (604)
96 PRK07843 3-ketosteroid-delta-1 34.7 38 0.00082 33.5 3.3 34 5-38 211-247 (557)
97 PRK06452 sdhA succinate dehydr 34.6 48 0.001 32.9 4.0 35 5-39 139-176 (566)
98 PRK11749 dihydropyrimidine deh 34.1 38 0.00083 32.4 3.1 37 231-268 413-452 (457)
99 PRK08205 sdhA succinate dehydr 34.1 47 0.001 33.0 3.9 33 5-37 143-182 (583)
100 PRK10157 putative oxidoreducta 33.0 37 0.0008 32.3 2.8 33 235-267 294-335 (428)
101 TIGR03140 AhpF alkyl hydropero 32.8 47 0.001 32.4 3.5 39 230-268 472-513 (515)
102 PRK06263 sdhA succinate dehydr 32.7 56 0.0012 32.1 4.1 34 4-37 136-173 (543)
103 PRK12835 3-ketosteroid-delta-1 32.7 44 0.00096 33.3 3.4 32 7-38 218-253 (584)
104 PRK08401 L-aspartate oxidase; 32.1 47 0.001 32.0 3.4 43 4-47 122-166 (466)
105 TIGR01318 gltD_gamma_fam gluta 31.8 50 0.0011 31.9 3.5 37 231-268 427-466 (467)
106 PRK12844 3-ketosteroid-delta-1 31.5 45 0.00098 33.0 3.2 33 233-265 505-548 (557)
107 COG2509 Uncharacterized FAD-de 31.4 56 0.0012 31.7 3.7 38 231-268 445-484 (486)
108 cd00027 BRCT Breast Cancer Sup 31.3 61 0.0013 20.9 3.0 18 6-23 16-33 (72)
109 PF03486 HI0933_like: HI0933-l 31.2 47 0.001 31.6 3.2 47 5-52 112-161 (409)
110 PRK12409 D-amino acid dehydrog 31.2 1.2E+02 0.0026 28.2 6.0 73 165-266 332-406 (410)
111 PRK15317 alkyl hydroperoxide r 30.7 53 0.0011 32.1 3.5 39 230-268 471-512 (517)
112 COG2081 Predicted flavoprotein 30.3 57 0.0012 31.1 3.5 49 4-54 113-164 (408)
113 PRK12845 3-ketosteroid-delta-1 30.3 42 0.00091 33.4 2.7 34 233-266 520-564 (564)
114 TIGR01372 soxA sarcosine oxida 30.0 55 0.0012 34.9 3.7 37 232-269 435-473 (985)
115 TIGR01316 gltA glutamate synth 30.0 49 0.0011 31.7 3.1 36 231-267 411-449 (449)
116 PRK00711 D-amino acid dehydrog 29.7 65 0.0014 30.0 3.8 31 234-266 370-402 (416)
117 PRK08641 sdhA succinate dehydr 29.5 48 0.001 33.1 3.0 15 231-245 364-378 (589)
118 TIGR01317 GOGAT_sm_gam glutama 29.4 50 0.0011 32.1 3.1 37 230-267 439-478 (485)
119 PRK08626 fumarate reductase fl 29.0 64 0.0014 32.8 3.8 32 6-37 162-196 (657)
120 PRK05329 anaerobic glycerol-3- 28.8 62 0.0014 31.0 3.6 48 4-52 261-313 (422)
121 PRK07057 sdhA succinate dehydr 28.6 61 0.0013 32.4 3.6 32 6-37 152-187 (591)
122 PRK08275 putative oxidoreducta 28.5 52 0.0011 32.5 3.1 34 4-37 139-176 (554)
123 PRK12775 putative trifunctiona 28.5 60 0.0013 34.7 3.7 37 231-268 716-755 (1006)
124 TIGR02061 aprA adenosine phosp 28.4 50 0.0011 33.2 3.0 17 230-246 401-417 (614)
125 PRK12771 putative glutamate sy 28.3 50 0.0011 32.6 2.9 37 231-268 405-444 (564)
126 PRK15405 ethanolamine utilizat 28.2 1.9E+02 0.004 25.2 5.9 49 162-210 94-149 (217)
127 PRK07512 L-aspartate oxidase; 28.2 60 0.0013 31.8 3.4 34 5-38 139-176 (513)
128 PF05199 GMC_oxred_C: GMC oxid 27.7 53 0.0012 25.5 2.5 28 235-262 114-143 (144)
129 PRK12837 3-ketosteroid-delta-1 27.5 48 0.001 32.4 2.6 32 7-38 178-213 (513)
130 TIGR02485 CobZ_N-term precorri 27.2 59 0.0013 30.8 3.1 34 233-266 385-429 (432)
131 PRK07804 L-aspartate oxidase; 27.1 66 0.0014 31.7 3.5 35 4-38 146-184 (541)
132 COG4741 Predicted secreted end 26.9 33 0.00072 28.2 1.1 35 176-210 97-132 (175)
133 PRK12770 putative glutamate sy 26.7 58 0.0012 29.9 2.9 36 231-267 311-349 (352)
134 TIGR02867 spore_II_P stage II 26.0 2.3E+02 0.005 24.2 6.2 30 157-188 121-150 (196)
135 COG1574 Predicted metal-depend 24.5 1.1E+02 0.0023 30.4 4.4 38 164-201 344-386 (535)
136 PRK12809 putative oxidoreducta 24.4 71 0.0015 32.2 3.2 37 231-268 596-635 (639)
137 TIGR03377 glycerol3P_GlpA glyc 24.3 84 0.0018 30.6 3.7 51 4-55 130-188 (516)
138 PF05265 DUF723: Protein of un 24.0 47 0.001 22.9 1.3 29 168-197 6-34 (60)
139 PF07045 DUF1330: Protein of u 24.0 69 0.0015 21.8 2.2 18 5-22 8-25 (65)
140 COG0492 TrxB Thioredoxin reduc 23.3 79 0.0017 28.9 3.0 38 230-267 260-300 (305)
141 PRK07803 sdhA succinate dehydr 23.3 70 0.0015 32.2 2.9 14 232-245 402-415 (626)
142 PRK12778 putative bifunctional 22.8 75 0.0016 32.7 3.1 35 232-267 712-749 (752)
143 PRK12814 putative NADPH-depend 22.5 1E+02 0.0022 31.2 3.9 36 231-267 462-500 (652)
144 COG0578 GlpA Glycerol-3-phosph 22.4 6.4E+02 0.014 25.1 9.2 50 5-56 167-224 (532)
145 TIGR03315 Se_ygfK putative sel 22.2 75 0.0016 34.1 3.0 36 231-267 801-839 (1012)
146 PRK10597 DNA damage-inducible 21.8 1.8E+02 0.004 21.2 4.1 30 162-191 17-46 (81)
147 PRK14976 5'-3' exonuclease; Pr 21.5 71 0.0015 28.8 2.3 30 238-268 183-212 (281)
148 PRK06481 fumarate reductase fl 21.4 78 0.0017 30.8 2.8 35 4-38 192-229 (506)
149 COG0665 DadA Glycine/D-amino a 21.4 2.5E+02 0.0054 25.5 6.1 47 4-52 158-207 (387)
150 COG2921 Uncharacterized conser 21.2 1.3E+02 0.0027 22.5 3.1 29 161-189 23-52 (90)
151 PTZ00188 adrenodoxin reductase 21.0 86 0.0019 30.9 2.9 33 234-267 403-439 (506)
152 PF07454 SpoIIP: Stage II spor 20.7 2.7E+02 0.0058 25.0 5.8 31 157-189 199-229 (268)
153 PRK12834 putative FAD-binding 20.6 88 0.0019 30.8 3.0 32 6-37 152-190 (549)
154 TIGR03862 flavo_PP4765 unchara 20.6 73 0.0016 30.1 2.3 47 5-53 89-137 (376)
155 PF14123 DUF4290: Domain of un 20.5 1.1E+02 0.0025 25.7 3.1 25 161-185 33-57 (176)
156 PRK09853 putative selenate red 20.2 92 0.002 33.4 3.1 38 231-268 803-842 (1019)
157 PRK06116 glutathione reductase 20.1 93 0.002 29.5 3.0 34 231-265 291-327 (450)
158 PF12831 FAD_oxidored: FAD dep 20.1 35 0.00075 32.5 0.0 47 5-52 93-145 (428)
No 1
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=100.00 E-value=4.8e-41 Score=324.07 Aligned_cols=249 Identities=20% Similarity=0.287 Sum_probs=212.7
Q ss_pred hhhhhhHHHHHHhcCeeeeee---eeeeeceeeEEEecCCCccCccCCCCCCCCCCCCCCCcccccccccccccCcccch
Q psy895 3 LLSFLKDKEIEKKGGKRLRKI---TLVIRTRSIYCYECDSWKDRRCLDPFNYSVLPIHQPALNPCNGCCVKMVRNSKTEF 79 (269)
Q Consensus 3 ~~~~~~~~~i~~~gg~~~~~~---~~~~~~~~i~~~~~~~~~~~~~~~~fi~~~~p~~~~~~~~~~~~~~~Ll~~~~~~~ 79 (269)
.|++.|.+.++++||+|+.++ +++.++.++..|++++++.+.++. +|+++.+ ..+ ..+|++.+..++
T Consensus 220 ~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~V~~~~g~~~~ad~-VI~a~~~-----~~~----~~~l~~~~~~~~ 289 (502)
T TIGR02734 220 ALVAAMAKLAEDLGGELRLNAEVIRIETEGGRATAVHLADGERLDADA-VVSNADL-----HHT----YRRLLPNHPRRR 289 (502)
T ss_pred HHHHHHHHHHHHCCCEEEECCeEEEEEeeCCEEEEEEECCCCEEECCE-EEECCcH-----HHH----HHHhcCcccccc
Confidence 467899999999999999985 666677788899999998899999 9999776 233 124677666666
Q ss_pred hhhhhhccCCCCCceEEEEe--e---cccCCCCCcceEee---------------eCCCCeEEEEcCCCCCCCCCCCCee
Q psy895 80 ESVRRTCTSKLDISLFMVDH--V---CMYEGSGRGHMCFC---------------ESDRPMIEMVLPSSLDNTLSPPGHH 139 (269)
Q Consensus 80 ~~~~r~~~~~~s~s~f~vyl--~---~~~~~~~~~~i~~~---------------~~~~p~~~v~~ps~~Dp~~AP~G~~ 139 (269)
.+.+++++++.+.|+|++|+ + ..++++.||++++. +|++|++|+++|+..||++||+|++
T Consensus 290 ~~~~~~~~~~~s~s~~~~~lgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~v~~~s~~dp~~aP~G~~ 369 (502)
T TIGR02734 290 YPAARLSRKRPSPSLFVLYFGLLGVDGHWPQLAHHTLCFGPRYKELFDEIFRKGRLAEDPSLYLHRPTVTDPSLAPPGCE 369 (502)
T ss_pred ccccccccCCcCCeeeEEEEeeccccCcCCCcCceeEecCcCHHHHHHHHhcCCCCCCCCcEEEEcCCCCCCCCCCCCCc
Confidence 66778889999999999999 4 46777777776541 3567899999999999999999999
Q ss_pred EEEEEEecccccCCCCCCCcHHHHHHHHHHHHHHHHHH-CCCCCcceEEEEecChhHHHHhhCCCCCccccccccccccc
Q psy895 140 VCLLFTQFTPYKLAGDRDWTEEDKANYATNVFSSIEQY-CPGFTQDIVGYEILTPPDLEKEFGLTGGNIFHGALSLNQLL 218 (269)
Q Consensus 140 ~l~i~~~~~p~~~~~g~~w~~~~K~~~a~~il~~le~~-~P~i~~~I~~~~~~TP~t~~~y~~~~~GsiyG~~~~~~q~~ 218 (269)
+++++++ +|++-.++.+|+ +.|+++++++|+.||++ +|+|+++|+..+++||+||++|+|+++|++||++++..|..
T Consensus 370 ~~~~~~~-~~~~~~~~~~~~-~~k~~~~~~il~~l~~~~~p~l~~~i~~~~~~TP~t~~~~~~~~~G~~~G~~~~~~q~~ 447 (502)
T TIGR02734 370 NLYVLAP-VPHLGTADVDWS-VEGPRYRDRILAYLEERAIPGLRDRIVVERTFTPADFRDRYNAWLGSAFSLEHTLTQSA 447 (502)
T ss_pred cEEEEEe-CCCCCCCCCCcH-HHHHHHHHHHHHHHHHhcCCChhHheEEEEEcCHHHHHHhcCCCCccccchhhchhhcc
Confidence 9999998 887512234797 57999999999999998 99999999999999999999999999999999999999988
Q ss_pred cCCCCCCCCCCCCCCCCCcEEEcCCCCCCCCCccch--HHHHHHHHHHHHhcC
Q psy895 219 FNRPLPIQGPSSPFTLIPHLLLCGSGAHPGGGVCGA--PGYIAAQMVNRLMRK 269 (269)
Q Consensus 219 ~~rp~~~~~~~~~~t~i~nLyl~G~~~~pG~Gv~gv--sg~~~a~~il~~~~~ 269 (269)
.+||. ..+|+|+||||||||+|||+||+|+ ||++||++|++++++
T Consensus 448 ~~rp~------~~~t~i~gLyl~G~~~~pG~Gv~g~~~sg~~~a~~il~~~~~ 494 (502)
T TIGR02734 448 WFRPH------NRDRKIDNLYLVGAGTHPGAGVPGVLGSAKATAKLMLGDLAP 494 (502)
T ss_pred cCCCC------CCCCCCCCEEEeCCCCCCCCCHHHHHHHHHHHHHHHHhhccC
Confidence 88983 3578999999999999999999995 999999999998763
No 2
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=100.00 E-value=3.1e-38 Score=303.91 Aligned_cols=242 Identities=14% Similarity=0.124 Sum_probs=197.6
Q ss_pred hhhhhhHHHHHHhcCeeeeee---eeeeeceeeEEEecCCC-----ccCccCCCCCCCCCCCCCCCcccccccccccccC
Q psy895 3 LLSFLKDKEIEKKGGKRLRKI---TLVIRTRSIYCYECDSW-----KDRRCLDPFNYSVLPIHQPALNPCNGCCVKMVRN 74 (269)
Q Consensus 3 ~~~~~~~~~i~~~gg~~~~~~---~~~~~~~~i~~~~~~~~-----~~~~~~~~fi~~~~p~~~~~~~~~~~~~~~Ll~~ 74 (269)
-|+..|.+.|+++||+|..++ +|+.++.++..+.+.++ +...++. +|+++.| ..+ .+|+++
T Consensus 233 ~l~~aL~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~~~~~~~~~~~ad~-VI~~~~~-----~~~-----~~ll~~ 301 (492)
T TIGR02733 233 TLSDRLVEALKRDGGNLLTGQRVTAIHTKGGRAGWVVVVDSRKQEDLNVKADD-VVANLPP-----QSL-----LELLGP 301 (492)
T ss_pred HHHHHHHHHHHhcCCEEeCCceEEEEEEeCCeEEEEEEecCCCCceEEEECCE-EEECCCH-----HHH-----HHhcCc
Confidence 478899999999999999885 77777666666766554 5688999 9999888 444 568877
Q ss_pred cccchhhhhhhccCCCCCceEEEEe--ec-ccC-CCCCcceEeeeCCCCeEEEEcCCCCCCCCCCCCeeEEEEEEecccc
Q psy895 75 SKTEFESVRRTCTSKLDISLFMVDH--VC-MYE-GSGRGHMCFCESDRPMIEMVLPSSLDNTLSPPGHHVCLLFTQFTPY 150 (269)
Q Consensus 75 ~~~~~~~~~r~~~~~~s~s~f~vyl--~~-~~~-~~~~~~i~~~~~~~p~~~v~~ps~~Dp~~AP~G~~~l~i~~~~~p~ 150 (269)
+.+++.+.+++++++.+.|+|++|+ +. .++ +..+|..+ .+...+.+|++.++ .||++||+|+++++++++ +|+
T Consensus 302 ~~~~~~~~~~~~~~~~s~~~~~v~l~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~-~d~~~aP~G~~~l~~~~~-~~~ 378 (492)
T TIGR02733 302 LGLPPGYRKRLKKLPEPSGAFVFYLGVKRAALPVDCPPHLQF-LSDHQGSLFVSISQ-EGDGRAPQGEATLIASSF-TDT 378 (492)
T ss_pred ccCCHHHHHHHhcCCCCCceEEEEEeecccccCCCCCcceee-ccCCCceEEEEeCC-ccccCCCCCceEEEEEcC-CCH
Confidence 6777788889999999999999999 44 333 22223222 12234578888765 578999999999988876 655
Q ss_pred cC---CCCCCCcHHHHHHHHHHHHHHHHHHCCCCCcceEEEEecChhHHHHhhCCCCCccccccccccccccCCCCCCCC
Q psy895 151 KL---AGDRDWTEEDKANYATNVFSSIEQYCPGFTQDIVGYEILTPPDLEKEFGLTGGNIFHGALSLNQLLFNRPLPIQG 227 (269)
Q Consensus 151 ~~---~~g~~w~~~~K~~~a~~il~~le~~~P~i~~~I~~~~~~TP~t~~~y~~~~~GsiyG~~~~~~q~~~~rp~~~~~ 227 (269)
.. .++.+|+ +.|+++++++|+.+|+++|+|+++|+..+++||+||++|+|+++|++||+++++.|..++++
T Consensus 379 ~~~~~~~~~~y~-~~k~~~~~~il~~le~~~p~l~~~i~~~~v~TP~t~~~~~~~~~G~~~G~~~~~~q~~~~~~----- 452 (492)
T TIGR02733 379 NDWSSLDEEDYT-AKKKQYTQTIIERLGHYFDLLEENWVHVELATPRTFERWTGRPQGIVGGLGQRPSTFGPFGL----- 452 (492)
T ss_pred HHHcCCCHHHHH-HHHHHHHHHHHHHHHHHCCCccccEEEEEccCCchHHHHhCCCCcEECCCCcCccccCCcCC-----
Confidence 42 1345687 68999999999999999999999999999999999999999999999999999999766665
Q ss_pred CCCCCCCCCcEEEcCCCCCCCCCccch--HHHHHHHHHHHH
Q psy895 228 PSSPFTLIPHLLLCGSGAHPGGGVCGA--PGYIAAQMVNRL 266 (269)
Q Consensus 228 ~~~~~t~i~nLyl~G~~~~pG~Gv~gv--sg~~~a~~il~~ 266 (269)
+.+|+|+||||||||+|||+||+|+ ||++||++|+++
T Consensus 453 --~~~t~i~gLyl~G~~~~pG~Gv~g~~~sg~~~a~~i~~~ 491 (492)
T TIGR02733 453 --SSRTPVKGLWLCGDSIHPGEGTAGVSYSALMVVRQILAS 491 (492)
T ss_pred --CCCCCCCCeEEecCccCCCCcHHHHHHHHHHHHHHHhhc
Confidence 5689999999999999999999997 999999999864
No 3
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=100.00 E-value=2e-37 Score=298.68 Aligned_cols=246 Identities=17% Similarity=0.197 Sum_probs=201.0
Q ss_pred hhhhhhHHHHHHhcCeeeeee---eeeeeceeeEEEecCCCccCccCCCCCCCCCCCCCCCcccccccccccccCcccch
Q psy895 3 LLSFLKDKEIEKKGGKRLRKI---TLVIRTRSIYCYECDSWKDRRCLDPFNYSVLPIHQPALNPCNGCCVKMVRNSKTEF 79 (269)
Q Consensus 3 ~~~~~~~~~i~~~gg~~~~~~---~~~~~~~~i~~~~~~~~~~~~~~~~fi~~~~p~~~~~~~~~~~~~~~Ll~~~~~~~ 79 (269)
.|.+.|.+.++++||+|+.++ +|+.++.++..+++++++.+.|+. +|+++.| ..+ ..+|++++.+++
T Consensus 230 ~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~g~~~~ad~-vV~a~~~-----~~~----~~~Ll~~~~~~~ 299 (493)
T TIGR02730 230 QIAESLVKGLEKHGGQIRYRARVTKIILENGKAVGVKLADGEKIYAKR-IVSNATR-----WDT----FGKLLKAENLPK 299 (493)
T ss_pred HHHHHHHHHHHHCCCEEEeCCeeeEEEecCCcEEEEEeCCCCEEEcCE-EEECCCh-----HHH----HHHhCCccccch
Confidence 367889999999999999885 666677889999999999999999 9999887 333 135888877777
Q ss_pred hhhhhhccCCCCCceEEEEe--eccc-CC-CC-CcceEee----eCCCCeEEEEcCCCCCCCCCCCCeeEEEEEEecccc
Q psy895 80 ESVRRTCTSKLDISLFMVDH--VCMY-EG-SG-RGHMCFC----ESDRPMIEMVLPSSLDNTLSPPGHHVCLLFTQFTPY 150 (269)
Q Consensus 80 ~~~~r~~~~~~s~s~f~vyl--~~~~-~~-~~-~~~i~~~----~~~~p~~~v~~ps~~Dp~~AP~G~~~l~i~~~~~p~ 150 (269)
.+++++++++.+.|+|++|+ +.+. |. .. ||.+... ...+|++|+++|+..||++||+|+++++++++ .++
T Consensus 300 ~~~~~~~~~~~s~s~~~~~l~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~v~~ps~~dps~aP~G~~~i~~~~~-~~~ 378 (493)
T TIGR02730 300 KEKNWQRNYVKSPSFLSLHLGVKADVLPPGTECHHILLEDWTNLEKPQGTIFVSIPTLLDPSLAPEGHHIIHTFTP-SSM 378 (493)
T ss_pred hhHHHHhhccCCCceEEEEEEecCccCCCCCCccEEecchhhccCCCCCeEEEEeCCCCCCCCCcCCcEEEEEecC-CCh
Confidence 77777788899999999999 5543 32 22 3322111 13468899999999999999999999988876 555
Q ss_pred cCC---CCCCCcHHHHHHHHHHHHHHHHHHCCCCCcceEEEEecChhHHHHhhCCCCCccccccccccccccCC-CCCCC
Q psy895 151 KLA---GDRDWTEEDKANYATNVFSSIEQYCPGFTQDIVGYEILTPPDLEKEFGLTGGNIFHGALSLNQLLFNR-PLPIQ 226 (269)
Q Consensus 151 ~~~---~g~~w~~~~K~~~a~~il~~le~~~P~i~~~I~~~~~~TP~t~~~y~~~~~GsiyG~~~~~~q~~~~r-p~~~~ 226 (269)
+-+ +..+|+ ++|+++++++|+.||+++|+++++|+..++.||+|+++|++.++|+ ||..+...+.+.++ |
T Consensus 379 ~~w~~~~~~~y~-~~k~~~~~~il~~l~~~~p~l~~~I~~~~~~TP~t~~r~~~~~~G~-~G~~~~~~~~~~~~~~---- 452 (493)
T TIGR02730 379 EDWQGLSPKDYE-AKKEADAERIIDRLEKIFPGLDSAIDYKEVGTPRTHRRFLGRDSGT-YGPIPRRTLPGLLPMP---- 452 (493)
T ss_pred hhccCCCcHHHH-HHHHHHHHHHHHHHHHHCCChhhcEEEEEeeCchhHHHHhCCCCcc-cCCcccccccccccCC----
Confidence 322 224676 6899999999999999999999999999999999999999999998 78877666655554 3
Q ss_pred CCCCCCCCCCcEEEcCCCCCCCCCccc--hHHHHHHHHHHHHhc
Q psy895 227 GPSSPFTLIPHLLLCGSGAHPGGGVCG--APGYIAAQMVNRLMR 268 (269)
Q Consensus 227 ~~~~~~t~i~nLyl~G~~~~pG~Gv~g--vsg~~~a~~il~~~~ 268 (269)
.++|+|+||||||||++||+||+| +||+++|++|++|++
T Consensus 453 ---~~~t~i~gLyl~G~~~~pG~Gv~g~~~sG~~~a~~i~~~~~ 493 (493)
T TIGR02730 453 ---FNRTAIPGLYCVGDSCFPGQGLNAVAFSGFACAHRVAADLG 493 (493)
T ss_pred ---CCCCCCCCeEEecCcCCCCCCHHHHHHHHHHHHHHHHhhcC
Confidence 578999999999999999999999 499999999999865
No 4
>KOG4254|consensus
Probab=100.00 E-value=9.4e-37 Score=280.86 Aligned_cols=253 Identities=32% Similarity=0.444 Sum_probs=210.1
Q ss_pred CchhhhhhHHHHHHhcCeeeeee---eeeeeceeeEEEecCCCccCccCCCCCCCCCCCCCCCcccccccccccccCccc
Q psy895 1 MTLLSFLKDKEIEKKGGKRLRKI---TLVIRTRSIYCYECDSWKDRRCLDPFNYSVLPIHQPALNPCNGCCVKMVRNSKT 77 (269)
Q Consensus 1 ~~~~~~~~~~~i~~~gg~~~~~~---~~~~~~~~i~~~~~~~~~~~~~~~~fi~~~~p~~~~~~~~~~~~~~~Ll~~~~~ 77 (269)
|--+|+.+++.++++||+|+.++ ++..++..+..|+-++|++.+.+. ++||+-| -.| +.+|++.+.+
T Consensus 263 ~Gavs~aia~~~~~~GaeI~tka~Vq~Illd~gka~GV~L~dG~ev~sk~-VvSNAt~-----~~T----f~kLlp~e~L 332 (561)
T KOG4254|consen 263 MGAVSFAIAEGAKRAGAEIFTKATVQSILLDSGKAVGVRLADGTEVRSKI-VVSNATP-----WDT----FEKLLPGEAL 332 (561)
T ss_pred hhHHHHHHHHHHHhccceeeehhhhhheeccCCeEEEEEecCCcEEEeee-eecCCch-----HHH----HHHhCCCccC
Confidence 44589999999999999999996 777888999999999999999988 9999998 456 3599999998
Q ss_pred chhhhhhhccC---CCCCc-eEEEEe--ecccC-CCCCcceE--e-------------e-----eCCCCeEEEEcCCCCC
Q psy895 78 EFESVRRTCTS---KLDIS-LFMVDH--VCMYE-GSGRGHMC--F-------------C-----ESDRPMIEMVLPSSLD 130 (269)
Q Consensus 78 ~~~~~~r~~~~---~~s~s-~f~vyl--~~~~~-~~~~~~i~--~-------------~-----~~~~p~~~v~~ps~~D 130 (269)
+.++ +++.+ ..+.. -...|+ +++-. .++||+.- . . ....|.+++++||..|
T Consensus 333 Peef--~i~q~d~~spv~k~~~psFl~~~~~~~~plph~~~~i~~~~ed~~~~H~~v~D~~~gl~s~~pvI~~siPS~lD 410 (561)
T KOG4254|consen 333 PEEF--VIQQLDTVSPVTKDKLPSFLCLPNTKSLPLPHHGYTIHYNAEDTQAHHRAVEDPRNGLASHRPVIELSIPSSLD 410 (561)
T ss_pred Cchh--hhhhcccccccccccCcceeecCCCCCCCCCccceeEEecCchHHHHHHHHhChhhcccccCCeEEEecccccC
Confidence 8887 33333 22221 222333 22222 23454321 1 1 1346889999999999
Q ss_pred CCCCCCCeeEEEEEEecccccCCCCCC-CcHHHHHHHHHHHHHHHHHHCCCCCcceEEEEecChhHHHHhhCCCCCcccc
Q psy895 131 NTLSPPGHHVCLLFTQFTPYKLAGDRD-WTEEDKANYATNVFSSIEQYCPGFTQDIVGYEILTPPDLEKEFGLTGGNIFH 209 (269)
Q Consensus 131 p~~AP~G~~~l~i~~~~~p~~~~~g~~-w~~~~K~~~a~~il~~le~~~P~i~~~I~~~~~~TP~t~~~y~~~~~GsiyG 209 (269)
|++||+|+|++.+++.++|+++.++.. |++++|+++++++++.+|+.+|||++.|+.+++.||+|.|||++.++|++|+
T Consensus 411 ptlappg~Hvl~lf~~~t~~~w~g~~~~eye~~K~~~ae~~~~~ie~l~Pgfsssv~~~dvgTP~t~qr~l~~~~Gn~~~ 490 (561)
T KOG4254|consen 411 PTLAPPGKHVLHLFTQYTPEEWEGGLKGEYETKKEAFAERVFSVIEKLAPGFSSSVESYDVGTPPTHQRFLGRPGGNIFH 490 (561)
T ss_pred CCcCCCCceEEEEeccCCccccccCCcccchHHHHHHHHHHHHHHHHHcCCccceEEEEecCCCchhhHHhcCCCCcccC
Confidence 999999999999999888987655432 6778999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccCCCCCCCCCCCCCCCCCcEEEcCCCCCCCCCccchHHHHHHHHHHHHh
Q psy895 210 GALSLNQLLFNRPLPIQGPSSPFTLIPHLLLCGSGAHPGGGVCGAPGYIAAQMVNRLM 267 (269)
Q Consensus 210 ~~~~~~q~~~~rp~~~~~~~~~~t~i~nLyl~G~~~~pG~Gv~gvsg~~~a~~il~~~ 267 (269)
.+....|....||.+.|. .++|||+|||+||+++|||+||.++.|+++|...+.+.
T Consensus 491 ~~~~ld~g~l~~Pv~~~s--~y~tPI~~LYlcGs~afPGgGV~a~aG~~~A~~a~~~~ 546 (561)
T KOG4254|consen 491 GAMGLDQGYLHRPVMAWS--NYSTPIPGLYLCGSGAFPGGGVMAAAGRLAAHSAILDR 546 (561)
T ss_pred cccccccccccCCccccc--cCCCCCCceEEecCCCCCCCCccccchhHHHHHHhhhh
Confidence 999999998999999888 89999999999999999999999998999998887653
No 5
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.96 E-value=2.4e-29 Score=242.30 Aligned_cols=240 Identities=26% Similarity=0.324 Sum_probs=185.9
Q ss_pred CchhhhhhHHHHHHhcCeeeeee---eeeeeceeeEEEecCCCccCccCCCCCCCCCCCCCCCcccccccccccccCccc
Q psy895 1 MTLLSFLKDKEIEKKGGKRLRKI---TLVIRTRSIYCYECDSWKDRRCLDPFNYSVLPIHQPALNPCNGCCVKMVRNSKT 77 (269)
Q Consensus 1 ~~~~~~~~~~~i~~~gg~~~~~~---~~~~~~~~i~~~~~~~~~~~~~~~~fi~~~~p~~~~~~~~~~~~~~~Ll~~~~~ 77 (269)
|.-|.+.|.+.++++||+|..++ +|++++++...++..+++...++. ++++..|. . ...+..+..
T Consensus 223 ~~al~~aL~~~~~~~Gg~I~~~~~V~~I~v~~g~g~~~~~~~g~~~~ad~-vv~~~~~~-----~------~~~l~~~~~ 290 (487)
T COG1233 223 MGALVDALAELAREHGGEIRTGAEVSQILVEGGKGVGVRTSDGENIEADA-VVSNADPA-----L------LARLLGEAR 290 (487)
T ss_pred HHHHHHHHHHHHHHcCCEEECCCceEEEEEeCCcceEEeccccceeccce-eEecCchh-----h------hhhhhhhhh
Confidence 34578999999999999999995 888888888888888887888888 99997771 1 222322222
Q ss_pred chhhhhhhccCCCCCceEEEEe--ecccCCCCCc-ceEee---------e---CCC-CeEEEEcCCCCCCCCCCCCeeEE
Q psy895 78 EFESVRRTCTSKLDISLFMVDH--VCMYEGSGRG-HMCFC---------E---SDR-PMIEMVLPSSLDNTLSPPGHHVC 141 (269)
Q Consensus 78 ~~~~~~r~~~~~~s~s~f~vyl--~~~~~~~~~~-~i~~~---------~---~~~-p~~~v~~ps~~Dp~~AP~G~~~l 141 (269)
+ .++..+...+.|+|..|+ +...+...|+ .++.. + ..+ |++++++|+..||++||+|++.+
T Consensus 291 ~---~~~~~~~~~~~~al~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~ps~~Dps~AP~G~~~~ 367 (487)
T COG1233 291 R---PRYRGSYLKSLSALSLYLGLKGDLLPLAHHTTILLGDTREQIEEAFDDRAGRPPPLYVSIPSLTDPSLAPEGKHST 367 (487)
T ss_pred h---hccccchhhhhHHHHhccCCCCCCcchhhcceEecCCcHHHHHHHhhhhcCCCCceEEeCCCCCCCccCCCCCcce
Confidence 2 356667778999999999 4444444443 34321 0 011 16899999999999999999822
Q ss_pred EEEEecccccCCCCCCCcHHHHHHHHHHHHHHHHHHCCCCCcceEEEEecChhHHHHhhCCCCCccccccccccccccCC
Q psy895 142 LLFTQFTPYKLAGDRDWTEEDKANYATNVFSSIEQYCPGFTQDIVGYEILTPPDLEKEFGLTGGNIFHGALSLNQLLFNR 221 (269)
Q Consensus 142 ~i~~~~~p~~~~~g~~w~~~~K~~~a~~il~~le~~~P~i~~~I~~~~~~TP~t~~~y~~~~~GsiyG~~~~~~q~~~~r 221 (269)
.. .+.+.. ...+|+ +.|++++++ ++.+++.+|+++++|+..++.||.+++++++.++|++||.+++..|..++|
T Consensus 368 ~~--~~~~~~--~~~~~~-~~~~~~~~~-~~~~~~~~p~~~~~iv~~~~~tp~~~e~~~~~~~G~~~~~~~~~~q~~~~r 441 (487)
T COG1233 368 FA--QLVPVP--SLGDYD-ELKESLADA-IDALEELAPGLRDRIVAREVLTPLDLERYLGLPGGDIFGGAHTLDQLGPFR 441 (487)
T ss_pred ee--eeeecC--cCCChH-HHHHHHHHH-HHHHhhcCCCcccceeEEEEeChHHHHHhcCCCCCcccchhcChhhhcCCC
Confidence 22 212221 122565 799999999 999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCcEEEcCCCCCCCCCccchHHHHHHHHHHHHh
Q psy895 222 PLPIQGPSSPFTLIPHLLLCGSGAHPGGGVCGAPGYIAAQMVNRLM 267 (269)
Q Consensus 222 p~~~~~~~~~~t~i~nLyl~G~~~~pG~Gv~gvsg~~~a~~il~~~ 267 (269)
|. ..+|+|+|||+||+++|||+|++|+.|.+++..++.+.
T Consensus 442 p~------~~~t~i~~LYl~Ga~t~PG~Gv~g~~g~~~a~~~~~~~ 481 (487)
T COG1233 442 PP------PKSTPIKGLYLVGASTHPGGGVPGVPGSAAAVALLIDL 481 (487)
T ss_pred CC------CCCCCcCceEEeCCcCCCCCCcchhhhhHHHHHhhhcc
Confidence 84 23689999999999999999999997777777766553
No 6
>PLN02612 phytoene desaturase
Probab=99.61 E-value=1.1e-14 Score=143.04 Aligned_cols=223 Identities=11% Similarity=0.096 Sum_probs=147.0
Q ss_pred hhhhhHHHHHHhcCeeeeee---eeee-eceeeEEEecCCCccCccCCCCCCCCCCCCCCCcccccccccccccCcccch
Q psy895 4 LSFLKDKEIEKKGGKRLRKI---TLVI-RTRSIYCYECDSWKDRRCLDPFNYSVLPIHQPALNPCNGCCVKMVRNSKTEF 79 (269)
Q Consensus 4 ~~~~~~~~i~~~gg~~~~~~---~~~~-~~~~i~~~~~~~~~~~~~~~~fi~~~~p~~~~~~~~~~~~~~~Ll~~~~~~~ 79 (269)
|...|++.|++.||+|..+. +|+. +++.+..+++++|+.+.|+. +|+++.+ .+ +-+|+++...+.
T Consensus 310 l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~-VI~a~p~------~~----l~~Ll~~~~~~~ 378 (567)
T PLN02612 310 LCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDV-YVSATPV------DI----LKLLLPDQWKEI 378 (567)
T ss_pred HHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCE-EEECCCH------HH----HHHhCcchhcCc
Confidence 56788899999999999885 6655 34457788888899999999 9999643 12 123666544444
Q ss_pred hhhhhhccCCCCCceEEEEe--ecccCCCCCcceEeeeCCCCeEEEEcCCCCCCCCCCCCeeEEEEEEecccccCCCCCC
Q psy895 80 ESVRRTCTSKLDISLFMVDH--VCMYEGSGRGHMCFCESDRPMIEMVLPSSLDNTLSPPGHHVCLLFTQFTPYKLAGDRD 157 (269)
Q Consensus 80 ~~~~r~~~~~~s~s~f~vyl--~~~~~~~~~~~i~~~~~~~p~~~v~~ps~~Dp~~AP~G~~~l~i~~~~~p~~~~~g~~ 157 (269)
++.++++++. ..+.+.+++ +..+.....+.+. .-.....++...++. .+.++++|++.+. ++. .+. .+
T Consensus 379 ~~~~~l~~l~-~~~v~~v~l~~dr~~~~~~~~~~~-~~~~~~~~~~d~S~~-~~~~~~~~~~ll~-~~~-~~a-----~~ 448 (567)
T PLN02612 379 PYFKKLDKLV-GVPVINVHIWFDRKLKNTYDHLLF-SRSPLLSVYADMSTT-CKEYYDPNKSMLE-LVF-APA-----EE 448 (567)
T ss_pred HHHHHHHhcC-CCCeEEEEEEECcccCCCCCceee-cCCCCceeehhhhhc-chhhcCCCCeEEE-EEE-EcC-----hh
Confidence 5666776665 567888888 6655322222332 111112333333333 3566777776433 333 322 24
Q ss_pred CcHHHHHHHHHHHHHHHHHHCCCC------CcceE-EEEecChhHHHHhhCCCCCccccccccccccccCCCCCCCCCCC
Q psy895 158 WTEEDKANYATNVFSSIEQYCPGF------TQDIV-GYEILTPPDLEKEFGLTGGNIFHGALSLNQLLFNRPLPIQGPSS 230 (269)
Q Consensus 158 w~~~~K~~~a~~il~~le~~~P~i------~~~I~-~~~~~TP~t~~~y~~~~~GsiyG~~~~~~q~~~~rp~~~~~~~~ 230 (269)
|...-++++.+.+++.|++.+|+. +.+|. +..+.+|.++.++ .+++. .+|| .
T Consensus 449 ~~~~sdeei~e~vl~~L~~lfp~~~~~~~~~~~i~~~~~v~~P~a~~~~--~pg~~------------~~rp-------~ 507 (567)
T PLN02612 449 WISRSDEDIIDATMKELAKLFPDEISADQSKAKILKYHVVKTPRSVYKT--VPNCE------------PCRP-------L 507 (567)
T ss_pred hhcCCHHHHHHHHHHHHHHHCCcccccccCCceEEEEEEeccCCceEEe--CCCCc------------ccCc-------c
Confidence 543457899999999999999987 23344 4778999987332 22222 1356 6
Q ss_pred CCCCCCcEEEcCCCCCCC--CCccch--HHHHHHHHHHHHhc
Q psy895 231 PFTLIPHLLLCGSGAHPG--GGVCGA--PGYIAAQMVNRLMR 268 (269)
Q Consensus 231 ~~t~i~nLyl~G~~~~pG--~Gv~gv--sg~~~a~~il~~~~ 268 (269)
.+||++||||+|+++.++ +++.|+ ||+.||++|+++++
T Consensus 508 ~~tPi~~l~lAGd~t~~~~~~smeGAv~SG~~AA~~I~~~~~ 549 (567)
T PLN02612 508 QRSPIEGFYLAGDYTKQKYLASMEGAVLSGKLCAQSIVQDYE 549 (567)
T ss_pred ccCccCCEEEeecceeCCchhhHHHHHHHHHHHHHHHHHHhc
Confidence 789999999999999765 367774 99999999998864
No 7
>PRK07233 hypothetical protein; Provisional
Probab=99.38 E-value=1.8e-11 Score=115.38 Aligned_cols=222 Identities=16% Similarity=0.114 Sum_probs=138.8
Q ss_pred hhhhhhHHHHHHhcCeeeeee---eeeeeceeeEEEecCCCccCccCCCCCCCCCCCCCCCcccccccccccccCcccch
Q psy895 3 LLSFLKDKEIEKKGGKRLRKI---TLVIRTRSIYCYECDSWKDRRCLDPFNYSVLPIHQPALNPCNGCCVKMVRNSKTEF 79 (269)
Q Consensus 3 ~~~~~~~~~i~~~gg~~~~~~---~~~~~~~~i~~~~~~~~~~~~~~~~fi~~~~p~~~~~~~~~~~~~~~Ll~~~~~~~ 79 (269)
-|...|.+.++++||+|..+. .++.++.+++-+. .+++..+|+. +|+++.+ ... .+|+++ .+.
T Consensus 199 ~l~~~l~~~l~~~g~~v~~~~~V~~i~~~~~~~~~~~-~~~~~~~ad~-vI~a~p~-----~~~-----~~ll~~--~~~ 264 (434)
T PRK07233 199 TLIDALAEAIEARGGEIRLGTPVTSVVIDGGGVTGVE-VDGEEEDFDA-VISTAPP-----PIL-----ARLVPD--LPA 264 (434)
T ss_pred HHHHHHHHHHHhcCceEEeCCCeeEEEEcCCceEEEE-eCCceEECCE-EEECCCH-----HHH-----HhhcCC--CcH
Confidence 367788999999999998885 5555566565554 4556788999 9999765 333 456643 334
Q ss_pred hhhhhhccCCCCCceEEEEe--ecccCCCCCcceEeee--CCCCeEEEEcCCCCCCCCCCCCeeEEEEEEecccccCCCC
Q psy895 80 ESVRRTCTSKLDISLFMVDH--VCMYEGSGRGHMCFCE--SDRPMIEMVLPSSLDNTLSPPGHHVCLLFTQFTPYKLAGD 155 (269)
Q Consensus 80 ~~~~r~~~~~~s~s~f~vyl--~~~~~~~~~~~i~~~~--~~~p~~~v~~ps~~Dp~~AP~G~~~l~i~~~~~p~~~~~g 155 (269)
...+.++++. ..+.+++++ +..+.. + .|... ++.|..-+..++..+|+.+|+|++.+.+.++ ++.+.
T Consensus 265 ~~~~~~~~~~-~~~~~~~~l~~~~~~~~--~--~~~~~~~~~~~~~~~~~~s~~~~~~~~~g~~~~~~~~~-~~~~~--- 335 (434)
T PRK07233 265 DVLARLRRID-YQGVVCMVLKLRRPLTD--Y--YWLNINDPGAPFGGVIEHTNLVPPERYGGEHLVYLPKY-LPGDH--- 335 (434)
T ss_pred HHHhhhcccC-ccceEEEEEEecCCCCC--C--ceeeecCCCCCcceEEEecccCCccccCCceEEEEeee-cCCCC---
Confidence 4556676665 456777777 443322 1 23222 2234444444667788888888886655544 43321
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHCCCCC-cceEEEEecChhHHHHhhCCCCCccccccccccccccCCCCCCCCCCCCCCC
Q psy895 156 RDWTEEDKANYATNVFSSIEQYCPGFT-QDIVGYEILTPPDLEKEFGLTGGNIFHGALSLNQLLFNRPLPIQGPSSPFTL 234 (269)
Q Consensus 156 ~~w~~~~K~~~a~~il~~le~~~P~i~-~~I~~~~~~TP~t~~~y~~~~~GsiyG~~~~~~q~~~~rp~~~~~~~~~~t~ 234 (269)
..|. ..++++.+++++.|++.+|+++ +.++..++.. ..+. +.+|... . ...+| ..+++
T Consensus 336 ~~~~-~~~~~~~~~~~~~L~~~~p~~~~~~~~~~~~~r----~~~a----~~~~~~g--~---~~~~~-------~~~~~ 394 (434)
T PRK07233 336 PLWQ-MSDEELLDRFLSYLRKMFPDFDRDDVRAVRISR----APYA----QPIYEPG--Y---LDKIP-------PYDTP 394 (434)
T ss_pred hhhc-CCHHHHHHHHHHHHHHhCCCCChhheeeEEEEE----eccc----cccccCc--h---hhcCC-------CcccC
Confidence 1343 3578899999999999999985 4455554321 0110 1112110 0 01233 45678
Q ss_pred CCcEEEcCCCCC--CCCCccch--HHHHHHHHHHHHhc
Q psy895 235 IPHLLLCGSGAH--PGGGVCGA--PGYIAAQMVNRLMR 268 (269)
Q Consensus 235 i~nLyl~G~~~~--pG~Gv~gv--sg~~~a~~il~~~~ 268 (269)
++||||+|++.. +|+++.++ ||+.||++|+++++
T Consensus 395 ~~~l~~aG~~~~~~~~~~~~~Ai~sG~~aA~~i~~~~~ 432 (434)
T PRK07233 395 IEGLYLAGMSQIYPEDRSINGSVRAGRRVAREILEDRR 432 (434)
T ss_pred cCCEEEeCCcccCCccCchhHHHHHHHHHHHHHhhhhc
Confidence 999999999643 33467764 99999999999876
No 8
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=99.17 E-value=3.4e-10 Score=108.06 Aligned_cols=218 Identities=14% Similarity=0.115 Sum_probs=128.5
Q ss_pred hhhhhhHHHHHHhcCeeeeee---eeee-eceeeEEEecCCCc-----cCccCCCCCCCCCCCCCCCccccccccccccc
Q psy895 3 LLSFLKDKEIEKKGGKRLRKI---TLVI-RTRSIYCYECDSWK-----DRRCLDPFNYSVLPIHQPALNPCNGCCVKMVR 73 (269)
Q Consensus 3 ~~~~~~~~~i~~~gg~~~~~~---~~~~-~~~~i~~~~~~~~~-----~~~~~~~fi~~~~p~~~~~~~~~~~~~~~Ll~ 73 (269)
.|...|.+.|+++||+|..+. +|+. ++.++..|++.+++ ...|+. +|+++.|. .. .+||+
T Consensus 214 ~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~-VI~a~p~~-----~~-----~~lL~ 282 (453)
T TIGR02731 214 RLCQPIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADA-YVSAMPVD-----IF-----KLLLP 282 (453)
T ss_pred HHHHHHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCE-EEEcCCHH-----HH-----HhhCc
Confidence 357889999999999999885 5543 34458788886665 688999 99997652 12 45776
Q ss_pred CcccchhhhhhhccCCCCCceEEEEe--ecccCCCCCcceEeeeCCCCeE-EEEcCCCCCCCCCCCCeeEEEEEEecccc
Q psy895 74 NSKTEFESVRRTCTSKLDISLFMVDH--VCMYEGSGRGHMCFCESDRPMI-EMVLPSSLDNTLSPPGHHVCLLFTQFTPY 150 (269)
Q Consensus 74 ~~~~~~~~~~r~~~~~~s~s~f~vyl--~~~~~~~~~~~i~~~~~~~p~~-~v~~ps~~Dp~~AP~G~~~l~i~~~~~p~ 150 (269)
+......+.+++.+++. .+.+.+++ +..+....+..+ +..+.. .....+..-...++++++.+.+... ..
T Consensus 283 ~~~~~~~~~~~~~~~~~-~~~~~v~l~~~~~~~~~~~~~~----~~~~~~~~~~~~s~~~~~~~~~~~~l~~~~~~--~~ 355 (453)
T TIGR02731 283 QPWKQMPFFQKLNGLEG-VPVINVHIWFDRKLTTVDHLLF----SRSPLLSVYADMSETCKEYADPDKSMLELVFA--PA 355 (453)
T ss_pred hhhhcCHHHHHhhcCCC-CcEEEEEEEEccccCCCCceee----eCCCcceeecchhhhChhhcCCCCeEEEEEec--Ch
Confidence 54322445567776663 46777777 554432221111 222221 1111111111334555554444321 11
Q ss_pred cCCCCCCCcHHHHHHHHHHHHHHHHHHCCCC-----C-cceEEEEecChhHHHHhhCCCCCccccccccccccccCCCCC
Q psy895 151 KLAGDRDWTEEDKANYATNVFSSIEQYCPGF-----T-QDIVGYEILTPPDLEKEFGLTGGNIFHGALSLNQLLFNRPLP 224 (269)
Q Consensus 151 ~~~~g~~w~~~~K~~~a~~il~~le~~~P~i-----~-~~I~~~~~~TP~t~~~y~~~~~GsiyG~~~~~~q~~~~rp~~ 224 (269)
..|.+.-++++.+++++.|++.+|+. . +.+.+..+..|.+. |. . -.|.. ..+|
T Consensus 356 -----~~~~~~~~ee~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~p~a~--~~-~----~pg~~-------~~~~-- 414 (453)
T TIGR02731 356 -----ADWIGRSDEEIIDATMAELAKLFPNHIKADSPAKILKYKVVKTPRSV--YK-T----TPGRQ-------QYRP-- 414 (453)
T ss_pred -----hhhhcCCHHHHHHHHHHHHHHhCCcccCCCCCceEEEEEEEECCCce--ec-c----CCCCh-------hhCc--
Confidence 12222457889999999999999853 1 23455666777662 21 1 11211 1224
Q ss_pred CCCCCCCCCCCCcEEEcCCCCCCC--CCccch--HHHHHHHHHH
Q psy895 225 IQGPSSPFTLIPHLLLCGSGAHPG--GGVCGA--PGYIAAQMVN 264 (269)
Q Consensus 225 ~~~~~~~~t~i~nLyl~G~~~~pG--~Gv~gv--sg~~~a~~il 264 (269)
..++|++||||+|+++..+ +++.|+ ||..||++|+
T Consensus 415 -----~~~~p~~~l~~AG~~~a~~~~g~~egAi~SG~~AA~~v~ 453 (453)
T TIGR02731 415 -----HQKTPIPNFFLAGDYTKQKYLASMEGAVLSGKLCAQAIV 453 (453)
T ss_pred -----cccCccCCEEEeehhccCcccccHHHHHHHHHHHHHHhC
Confidence 5678899999999998432 256563 9999999874
No 9
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=99.07 E-value=6.3e-10 Score=107.29 Aligned_cols=220 Identities=13% Similarity=0.083 Sum_probs=124.0
Q ss_pred hhhhhhHHHHHHhcCeeeeee---eeeeec----e-eeEEEecCCC---ccCccCCCCCCCCCCCCCCCccccccccccc
Q psy895 3 LLSFLKDKEIEKKGGKRLRKI---TLVIRT----R-SIYCYECDSW---KDRRCLDPFNYSVLPIHQPALNPCNGCCVKM 71 (269)
Q Consensus 3 ~~~~~~~~~i~~~gg~~~~~~---~~~~~~----~-~i~~~~~~~~---~~~~~~~~fi~~~~p~~~~~~~~~~~~~~~L 71 (269)
+++..|++.|++.||+|..++ +++.++ + +++.++++++ +...++. +|.++.+ -.+ .+|
T Consensus 220 ~l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~-VVlA~p~-----~~~-----~~L 288 (474)
T TIGR02732 220 YLTKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADA-YVAACDV-----PGI-----KRL 288 (474)
T ss_pred hHHHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCE-EEECCCh-----HHH-----Hhh
Confidence 467779999999999998885 555432 3 3888888655 4477888 9998665 223 567
Q ss_pred ccCcccchhhhhhhccCCCCCceEEEEe--ecccC--C-------------CCCcceEeeeCCCCeEEEEcCCCCCC-CC
Q psy895 72 VRNSKTEFESVRRTCTSKLDISLFMVDH--VCMYE--G-------------SGRGHMCFCESDRPMIEMVLPSSLDN-TL 133 (269)
Q Consensus 72 l~~~~~~~~~~~r~~~~~~s~s~f~vyl--~~~~~--~-------------~~~~~i~~~~~~~p~~~v~~ps~~Dp-~~ 133 (269)
+++........+.+.+++. .+..+||| +.... . +.+. ++.....+++.+.. ....+ .+
T Consensus 289 l~~~~~~~~~~~~l~~l~~-~pi~~v~l~~~~~v~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~ 364 (474)
T TIGR02732 289 LPQEWRQFEEFDNIYKLDA-VPVATVQLRYDGWVTELQDLAKRKQLKRAAGLDNL-LYTADADFSCFADL--ALTSPDDY 364 (474)
T ss_pred CChhhhcCHHHhhHhcCCC-CCeEEEEEEeccccccccchhhhhccccccccccc-ccccCccceeeehh--hccCHHHH
Confidence 8753222334567777665 57788888 43221 1 1110 11011122321111 01112 24
Q ss_pred CCCCeeE-EEEEEecccccCCCCCCCcHHHHHHHHHHHHHHHHHHCCCCCcc-eEEEEecChhHHHHhhCCCCCcccccc
Q psy895 134 SPPGHHV-CLLFTQFTPYKLAGDRDWTEEDKANYATNVFSSIEQYCPGFTQD-IVGYEILTPPDLEKEFGLTGGNIFHGA 211 (269)
Q Consensus 134 AP~G~~~-l~i~~~~~p~~~~~g~~w~~~~K~~~a~~il~~le~~~P~i~~~-I~~~~~~TP~t~~~y~~~~~GsiyG~~ 211 (269)
++.|... +.+.+. ... ++.+.-.+++.+++.+.|++.+|.+++. +....+ . ....++|-..
T Consensus 365 ~~~~~~~~l~~~~~-~~~------~~~~~~~~~l~~~~~~~L~~~~p~~~~~~~~~~~v------~----~~~~a~~~~~ 427 (474)
T TIGR02732 365 YKEGQGSLLQCVLT-PGD------PWMPESNEEIAKRVDKQVRALFPSSKNLKLTWSSV------V----KLAQSLYREA 427 (474)
T ss_pred hccCCCeEEEEEEe-Chh------hhcCCCHHHHHHHHHHHHHHhCccccCCceeEEEE------E----EecCceeccC
Confidence 4444443 333222 111 1211245789999999999999987543 332110 0 1112233222
Q ss_pred ccccccccCCCCCCCCCCCCCCCCCcEEEcCCCCCCCC--Cccc-h-HHHHHHHHHH
Q psy895 212 LSLNQLLFNRPLPIQGPSSPFTLIPHLLLCGSGAHPGG--GVCG-A-PGYIAAQMVN 264 (269)
Q Consensus 212 ~~~~q~~~~rp~~~~~~~~~~t~i~nLyl~G~~~~pG~--Gv~g-v-sg~~~a~~il 264 (269)
.... ..|| +.+|+++|||++|||+..|. ++-| + ||..||+.|+
T Consensus 428 pg~~---~~~P-------~~~t~~~~l~lAGD~t~~~~pas~egAv~sG~~aA~~i~ 474 (474)
T TIGR02732 428 PGMD---PFRP-------DQKTPISNFFLAGSYTQQDYIDSMEGATLSGRQAAAAIL 474 (474)
T ss_pred CCCc---ccCC-------CCCCCCCCeEEeccccccCchHHHhHHHHHHHHHHHHhC
Confidence 2221 2357 78999999999999997654 2223 2 9999998874
No 10
>PLN02487 zeta-carotene desaturase
Probab=99.01 E-value=8.6e-09 Score=101.36 Aligned_cols=224 Identities=13% Similarity=0.095 Sum_probs=127.3
Q ss_pred hhhhhhHHHHHHhcCeeeeee---eeeeec---e--eeEEEec---CCCccCccCCCCCCCCCCCCCCCccccccccccc
Q psy895 3 LLSFLKDKEIEKKGGKRLRKI---TLVIRT---R--SIYCYEC---DSWKDRRCLDPFNYSVLPIHQPALNPCNGCCVKM 71 (269)
Q Consensus 3 ~~~~~~~~~i~~~gg~~~~~~---~~~~~~---~--~i~~~~~---~~~~~~~~~~~fi~~~~p~~~~~~~~~~~~~~~L 71 (269)
.|..-+.+.|+++||+|..+. +++.++ + +++.+++ .+++.+.++. +|+++.+ ... .+|
T Consensus 296 ~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~-VV~A~p~-----~~~-----~~L 364 (569)
T PLN02487 296 RLSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADA-YVAACDV-----PGI-----KRL 364 (569)
T ss_pred HHHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCE-EEECCCH-----HHH-----HHh
Confidence 466788999999999988774 555542 1 4888888 3344577888 8998665 222 567
Q ss_pred ccCcccchhhhhhhccCCCCCceEEEEe--ecccCCCCC-------------cceEee-eCCCCeEEEE-cCCCCCCCCC
Q psy895 72 VRNSKTEFESVRRTCTSKLDISLFMVDH--VCMYEGSGR-------------GHMCFC-ESDRPMIEMV-LPSSLDNTLS 134 (269)
Q Consensus 72 l~~~~~~~~~~~r~~~~~~s~s~f~vyl--~~~~~~~~~-------------~~i~~~-~~~~p~~~v~-~ps~~Dp~~A 134 (269)
+++........+++.+++. ....++|| +..+....+ .+.|+. .+++++++.. ..+..| .+.
T Consensus 365 lp~~~~~~~~~~~l~~L~~-~pi~tv~L~~d~~v~~~~~~~~~r~l~~~~g~~~~~~~~~~~~~f~~di~l~~~~~-~~~ 442 (569)
T PLN02487 365 LPEQWREYEFFDNIYKLVG-VPVVTVQLRYNGWVTEMQDLELSRQLRRAAGLDNLLYSADADFSCFADLALTSPED-YYK 442 (569)
T ss_pred CCchhhccHHHhHHhcCCC-eeEEEEEEEecccccccccccccccccccccccccccccCCCcceEeeeecCCHHH-Hcc
Confidence 8765322233467776655 66788888 443321111 122211 1234442221 010000 011
Q ss_pred CCCeeEEEEEEecccccCCCCCCCcHHHHHHHHHHHHHHHHHHCCCCCcc-eEEEEecChhHHHHhhCCCCCcccccccc
Q psy895 135 PPGHHVCLLFTQFTPYKLAGDRDWTEEDKANYATNVFSSIEQYCPGFTQD-IVGYEILTPPDLEKEFGLTGGNIFHGALS 213 (269)
Q Consensus 135 P~G~~~l~i~~~~~p~~~~~g~~w~~~~K~~~a~~il~~le~~~P~i~~~-I~~~~~~TP~t~~~y~~~~~GsiyG~~~~ 213 (269)
+...+.+.+... +-+ +|...-.+++++++++.|++.+|.+++. +....+. ....++|-....
T Consensus 443 ~~~g~~l~~vis--~a~-----~~~~~~~~ei~~~~~~~L~~~~p~~~~~~v~~~~vv----------~~~~at~~~~pg 505 (569)
T PLN02487 443 EGEGSLIQAVLT--PGD-----PYMPLSNDKIVEKVHKQVLELFPSSRGLEVTWSSVV----------KIGQSLYREAPG 505 (569)
T ss_pred cCCceEEEEEEc--CCc-----cccCCCHHHHHHHHHHHHHHhCcccccCceEEEEEE----------EccCceeccCCC
Confidence 111233443322 111 1222346789999999999999998643 4432211 111223322221
Q ss_pred ccccccCCCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcc--c-h-HHHHHHHHHHHH
Q psy895 214 LNQLLFNRPLPIQGPSSPFTLIPHLLLCGSGAHPGGGVC--G-A-PGYIAAQMVNRL 266 (269)
Q Consensus 214 ~~q~~~~rp~~~~~~~~~~t~i~nLyl~G~~~~pG~Gv~--g-v-sg~~~a~~il~~ 266 (269)
.. ..|| +.+|+++||||+|||+..+..-. | + ||..||+.|++.
T Consensus 506 ~~---~~RP-------~~~T~~~nl~LAGD~t~~~yPat~EgAv~SG~~AA~~i~~~ 552 (569)
T PLN02487 506 MD---PFRP-------DQKTPISNFFLAGSYTKQDYIDSMEGATLSGRQAAAYICEA 552 (569)
T ss_pred cc---ccCC-------CCCCCCCCEEEeCcccccCCcchHHHHHHHHHHHHHHHHHH
Confidence 11 3467 78999999999999998655322 3 2 999999999876
No 11
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=98.98 E-value=9.9e-09 Score=96.02 Aligned_cols=211 Identities=14% Similarity=0.104 Sum_probs=116.2
Q ss_pred hhhhhhHHHHHHhcCeeeeee---eeeeeceeeEEEecCCCccCccCCCCCCCCCCCCCCCcccccccccccccCcccch
Q psy895 3 LLSFLKDKEIEKKGGKRLRKI---TLVIRTRSIYCYECDSWKDRRCLDPFNYSVLPIHQPALNPCNGCCVKMVRNSKTEF 79 (269)
Q Consensus 3 ~~~~~~~~~i~~~gg~~~~~~---~~~~~~~~i~~~~~~~~~~~~~~~~fi~~~~p~~~~~~~~~~~~~~~Ll~~~~~~~ 79 (269)
++...|.+.|++.||+|..+. .|+..+.++..+.+.+++.+.|+. +|+++.+ .+. .+|+++.
T Consensus 198 ~~~~~l~~~l~~~g~~i~~~~~V~~i~~~~~~~~~~~~~~g~~~~~d~-vi~a~p~-----~~~-----~~ll~~~---- 262 (419)
T TIGR03467 198 LFPEPARRWLDSRGGEVRLGTRVRSIEANAGGIRALVLSGGETLPADA-VVLAVPP-----RHA-----ASLLPGE---- 262 (419)
T ss_pred HHHHHHHHHHHHcCCEEEcCCeeeEEEEcCCcceEEEecCCccccCCE-EEEcCCH-----HHH-----HHhCCCc----
Confidence 445568889999999998884 666666655544445677889999 9998666 333 4566542
Q ss_pred hhhhhhccCCCCCceEEEEe--eccc-CCCCCcceEeeeCCCCeEEEEcCCCCCCCCCCCCeeEEEEEEecccccCCCCC
Q psy895 80 ESVRRTCTSKLDISLFMVDH--VCMY-EGSGRGHMCFCESDRPMIEMVLPSSLDNTLSPPGHHVCLLFTQFTPYKLAGDR 156 (269)
Q Consensus 80 ~~~~r~~~~~~s~s~f~vyl--~~~~-~~~~~~~i~~~~~~~p~~~v~~ps~~Dp~~AP~G~~~l~i~~~~~p~~~~~g~ 156 (269)
...+.+++++++ +...+++ +..+ ....+..+ ...+.-++...+ ...+. ...+.++.. .. .
T Consensus 263 ~~~~~l~~~~~~-~~~~v~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~----~~~~~-~~~~~~~~~---~~----~ 325 (419)
T TIGR03467 263 DLGALLTALGYS-PITTVHLRLDRAVRLPAPMVGL----VGGLAQWLFDRG----QLAGE-PGYLAVVIS---AA----R 325 (419)
T ss_pred hHHHHHhhcCCc-ceEEEEEEeCCCcCCCCCeeee----cCCceeEEEECC----cCCCC-CCEEEEEEe---cc----h
Confidence 334567777665 4556777 5544 22222111 112222222111 11121 112222222 11 1
Q ss_pred CCcHHHHHHHHHHHHHHHHHHCCCCC-cceEEEEecChhHHHHhhCCCCCccccccccccccccCCCCCCCCCCCCCCCC
Q psy895 157 DWTEEDKANYATNVFSSIEQYCPGFT-QDIVGYEILTPPDLEKEFGLTGGNIFHGALSLNQLLFNRPLPIQGPSSPFTLI 235 (269)
Q Consensus 157 ~w~~~~K~~~a~~il~~le~~~P~i~-~~I~~~~~~TP~t~~~y~~~~~GsiyG~~~~~~q~~~~rp~~~~~~~~~~t~i 235 (269)
++.+.-++++.+.+++.|++.+|+.. ..++. .+...... +.|+...... ..+| ..++++
T Consensus 326 ~~~~~~~e~~~~~~l~~l~~~~~~~~~~~~~~---------~~~~~~~~-~~~~~~~g~~---~~~~-------~~~~~~ 385 (419)
T TIGR03467 326 DLVDLPREELADRIVAELRRAFPRVAGAKPLW---------ARVIKEKR-ATFAATPGLN---RLRP-------GARTPW 385 (419)
T ss_pred hhccCCHHHHHHHHHHHHHHhcCccccCCccc---------eEEEEccC-CccccCCccc---ccCC-------CCCCCc
Confidence 12112357899999999999999753 22211 11111111 2343322211 2244 456789
Q ss_pred CcEEEcCCCCCCCC--Cccch--HHHHHHHHHHH
Q psy895 236 PHLLLCGSGAHPGG--GVCGA--PGYIAAQMVNR 265 (269)
Q Consensus 236 ~nLyl~G~~~~pG~--Gv~gv--sg~~~a~~il~ 265 (269)
+||||+|+++.+|. -+-|+ ||..+|++|++
T Consensus 386 ~~l~~aGd~~~~~~~~~~egA~~SG~~aA~~i~~ 419 (419)
T TIGR03467 386 PNLFLAGDWTATGWPATMEGAVRSGYQAAEAVLK 419 (419)
T ss_pred CCEEEecccccCCCcchHHHHHHHHHHHHHHHhC
Confidence 99999999998631 12243 99999998864
No 12
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=98.93 E-value=5.3e-10 Score=103.33 Aligned_cols=223 Identities=17% Similarity=0.141 Sum_probs=121.2
Q ss_pred hhhhhhHHHHHHhcCeeeeee---eeeeeceeeEEEecCCCccCccCCCCCCCCCCCCCCCcccccccccc-cccCcccc
Q psy895 3 LLSFLKDKEIEKKGGKRLRKI---TLVIRTRSIYCYECDSWKDRRCLDPFNYSVLPIHQPALNPCNGCCVK-MVRNSKTE 78 (269)
Q Consensus 3 ~~~~~~~~~i~~~gg~~~~~~---~~~~~~~~i~~~~~~~~~~~~~~~~fi~~~~p~~~~~~~~~~~~~~~-Ll~~~~~~ 78 (269)
.++..+...++..|++|.-+. +|+..+.++ .+.+.+++...|+. +|+++.+ ... .+ ++.+ ..+
T Consensus 210 ~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v-~v~~~~g~~~~ad~-VI~a~p~-----~~l-----~~i~~~p-~l~ 276 (450)
T PF01593_consen 210 GLSLALALAAEELGGEIRLNTPVTRIEREDGGV-TVTTEDGETIEADA-VISAVPP-----SVL-----KNILLLP-PLP 276 (450)
T ss_dssp TTHHHHHHHHHHHGGGEESSEEEEEEEEESSEE-EEEETTSSEEEESE-EEE-S-H-----HHH-----HTSEEES-TSH
T ss_pred chhHHHHHHHhhcCceeecCCcceecccccccc-ccccccceEEecce-eeecCch-----hhh-----hhhhhcc-ccc
Confidence 355667778888899988885 766776666 48888888999999 9999665 222 21 2222 233
Q ss_pred hhhhhhhccCCCCCceEEEEe--ecccC--CCCCcceEeeeCCCCeEEEEcCCCCCCCCCCCCeeEEEEEEecccccCCC
Q psy895 79 FESVRRTCTSKLDISLFMVDH--VCMYE--GSGRGHMCFCESDRPMIEMVLPSSLDNTLSPPGHHVCLLFTQFTPYKLAG 154 (269)
Q Consensus 79 ~~~~~r~~~~~~s~s~f~vyl--~~~~~--~~~~~~i~~~~~~~p~~~v~~ps~~Dp~~AP~G~~~l~i~~~~~p~~~~~ 154 (269)
....+.++++..+.. ..+++ +..+. +.....++...+..+..++..++..++. ++...+..++. .++.
T Consensus 277 ~~~~~a~~~~~~~~~-~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~-~~~~--- 348 (450)
T PF01593_consen 277 EDKRRAIENLPYSSV-SKVFLGFDRPFWPPDIDFFGILYSDGFSPIGYVSDPSKFPGR---PGGGVLTSYVG-GPDA--- 348 (450)
T ss_dssp HHHHHHHHTEEEEEE-EEEEEEESSGGGGSTTTESEEEEESSTSSEEEEEEECCTTSC---TTSEEEEEEEE-HHHH---
T ss_pred ccccccccccccCcc-eeEEEeeecccccccccccceecccCccccccccccccCccc---ccCCcceeeee-cccc---
Confidence 333455555555432 24444 44443 2111122111111345566656555544 34445555554 3331
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHCCC--CCcceE--EEEecC-hhHHHHhhCCCCCccccccccccccccCCCCCCCCCC
Q psy895 155 DRDWTEEDKANYATNVFSSIEQYCPG--FTQDIV--GYEILT-PPDLEKEFGLTGGNIFHGALSLNQLLFNRPLPIQGPS 229 (269)
Q Consensus 155 g~~w~~~~K~~~a~~il~~le~~~P~--i~~~I~--~~~~~T-P~t~~~y~~~~~GsiyG~~~~~~q~~~~rp~~~~~~~ 229 (269)
..|.+.-.+++.+.+++.|++.+|. ..+-+. ...... |.. .|+......... ..+++
T Consensus 349 -~~~~~~~~e~~~~~~~~~L~~~~~~~~~~~~~~~~~~~w~~~~~~--------~~~~~~~~~~~~--~~~~~------- 410 (450)
T PF01593_consen 349 -PEWDDLSDEEILERVLDDLRKILPGASIPDPIDITVTRWSRDPYP--------RGSYSYFPPGQS--SQFRP------- 410 (450)
T ss_dssp -HHHTTSCHHHHHHHHHHHHHHHHTTGGGGEESEEEEEECTTSTTT--------SSSCECHCTTHH--HHHHH-------
T ss_pred -chhcccchhhhHHHHHHHhhhcccccccccccccccccccccccc--------cccccccccccc--ccccc-------
Confidence 0122223467889999999999985 222111 111111 211 121111111000 01223
Q ss_pred CCCCCC-CcEEEcCCCCCCC--CCccch--HHHHHHHHHH
Q psy895 230 SPFTLI-PHLLLCGSGAHPG--GGVCGA--PGYIAAQMVN 264 (269)
Q Consensus 230 ~~~t~i-~nLyl~G~~~~pG--~Gv~gv--sg~~~a~~il 264 (269)
..++|+ +||||||++++++ +|+.|+ ||+.||++||
T Consensus 411 ~~~~~~~~~l~~aG~~~~~~~~~~~~gA~~sG~~aA~~il 450 (450)
T PF01593_consen 411 ALRTPIDPGLYFAGDWTSPGYPGGIEGAILSGRRAAEEIL 450 (450)
T ss_dssp HHHSCBTTTEEE-SGGGSSSSTTSHHHHHHHHHHHHHHHH
T ss_pred cccCCcceEEEEeecccCCCCCCcHHHHHHHHHHHHHHhC
Confidence 456677 7999999999987 588885 9999999986
No 13
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=98.76 E-value=1.2e-07 Score=89.85 Aligned_cols=207 Identities=11% Similarity=-0.026 Sum_probs=113.1
Q ss_pred eeeeee---eeeeeceeeEEEecCCCccCccCCCCCCCCCCCCCCCcccccccccccccCcccchhhhhhhccCCCCCce
Q psy895 18 KRLRKI---TLVIRTRSIYCYECDSWKDRRCLDPFNYSVLPIHQPALNPCNGCCVKMVRNSKTEFESVRRTCTSKLDISL 94 (269)
Q Consensus 18 ~~~~~~---~~~~~~~~i~~~~~~~~~~~~~~~~fi~~~~p~~~~~~~~~~~~~~~Ll~~~~~~~~~~~r~~~~~~s~s~ 94 (269)
+|..+. +|+..+..+ .+.+++++...|+. +|.++.+. +. .+|+.+ +...+.+++++++. .
T Consensus 235 ~i~~~~~V~~i~~~~~~~-~v~~~~g~~~~~d~-vI~a~p~~-----~~-----~~l~~~----~~~~~~~~~~~~~~-~ 297 (451)
T PRK11883 235 TIHKGTPVTKIDKSGDGY-EIVLSNGGEIEADA-VIVAVPHP-----VL-----PSLFVA----PPAFALFKTIPSTS-V 297 (451)
T ss_pred eEEeCCEEEEEEEcCCeE-EEEECCCCEEEcCE-EEECCCHH-----HH-----HHhccC----hhHHHHHhCCCCCc-e
Confidence 566553 555555443 46677888899999 99996662 22 345433 23345566666643 3
Q ss_pred EEEEe--ecccCCCCCc-ceEeee-CCCCeEEEEcCCCCCCCCCCCCeeEEEEEEecccccCCCCCCCcHHHHHHHHHHH
Q psy895 95 FMVDH--VCMYEGSGRG-HMCFCE-SDRPMIEMVLPSSLDNTLSPPGHHVCLLFTQFTPYKLAGDRDWTEEDKANYATNV 170 (269)
Q Consensus 95 f~vyl--~~~~~~~~~~-~i~~~~-~~~p~~~v~~ps~~Dp~~AP~G~~~l~i~~~~~p~~~~~g~~w~~~~K~~~a~~i 170 (269)
..+++ +..++...+. .+++.. .+.+...+...+...|..+|+|+..+.++.. .+.+ ...|+ .-.+++.+.+
T Consensus 298 ~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~p~g~~~~~~~~~-~~~~---~~~~~-~~~~~~~~~~ 372 (451)
T PRK11883 298 ATVALAFPESATNLPDGTGFLVARNSDYTITACTWTSKKWPHTTPEGKVLLRLYVG-RPGD---EAVVD-ATDEELVAFV 372 (451)
T ss_pred EEEEEEeccccCCCCCceEEEecCCCCCcEEEEEeEcCcCCCCCCCCcEEEEEecC-CCCC---chhcc-CCHHHHHHHH
Confidence 46666 5544333321 232211 1223444545666778889988876555433 2221 11122 2357889999
Q ss_pred HHHHHHHCCCCCcceEEEEecChhHHHHhhCCCCCccccccccccccccCCCCCCCCCCCCCCCCCcEEEcCCCCCCCCC
Q psy895 171 FSSIEQYCPGFTQDIVGYEILTPPDLEKEFGLTGGNIFHGALSLNQLLFNRPLPIQGPSSPFTLIPHLLLCGSGAHPGGG 250 (269)
Q Consensus 171 l~~le~~~P~i~~~I~~~~~~TP~t~~~y~~~~~GsiyG~~~~~~q~~~~rp~~~~~~~~~~t~i~nLyl~G~~~~pG~G 250 (269)
++.|++.++ +....+...+.. |+. . =..|+... ..+....++ .... ++|||++|+++. |.|
T Consensus 373 ~~~L~~~~g-~~~~~~~~~~~r---w~~---a--~p~~~~~~-~~~~~~l~~-------~l~~-~~~l~~aG~~~~-g~~ 433 (451)
T PRK11883 373 LADLSKVMG-ITGDPEFTIVQR---WKE---A--MPQYGVGH-IERVAELRA-------GLPH-YPGLYVAGASFE-GVG 433 (451)
T ss_pred HHHHHHHhC-CCCCceEEEEee---cCc---c--CCCCCccH-HHHHHHHHH-------hhhh-CCCEEEECcccC-Ccc
Confidence 999999864 332332222211 111 0 00122111 111111122 1222 689999999986 679
Q ss_pred ccch--HHHHHHHHHHH
Q psy895 251 VCGA--PGYIAAQMVNR 265 (269)
Q Consensus 251 v~gv--sg~~~a~~il~ 265 (269)
++++ ||+.+|++|+.
T Consensus 434 i~~av~sg~~~a~~i~~ 450 (451)
T PRK11883 434 LPDCIAQAKRAAARLLA 450 (451)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 9884 99999999975
No 14
>PRK07208 hypothetical protein; Provisional
Probab=98.31 E-value=9e-06 Score=78.18 Aligned_cols=228 Identities=12% Similarity=0.068 Sum_probs=122.5
Q ss_pred chhhhhhHHHHHHhcCeeeeee---eeeeecee-eEEEec--CCCc--cCccCCCCCCCCCCCCCCCccccccccccccc
Q psy895 2 TLLSFLKDKEIEKKGGKRLRKI---TLVIRTRS-IYCYEC--DSWK--DRRCLDPFNYSVLPIHQPALNPCNGCCVKMVR 73 (269)
Q Consensus 2 ~~~~~~~~~~i~~~gg~~~~~~---~~~~~~~~-i~~~~~--~~~~--~~~~~~~fi~~~~p~~~~~~~~~~~~~~~Ll~ 73 (269)
.-|...|.+.|++.||+|..++ +|+.++.+ +..+.+ .+++ .+.|+. +|+++.| ..+ .++|+
T Consensus 218 ~~l~~~L~~~l~~~g~~i~~~~~V~~I~~~~~~~v~~~~~~~~~g~~~~~~ad~-VI~a~p~-----~~l-----~~~l~ 286 (479)
T PRK07208 218 GQLWETAAEKLEALGGKVVLNAKVVGLHHDGDGRIAVVVVNDTDGTEETVTADQ-VISSMPL-----REL-----VAALD 286 (479)
T ss_pred chHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCcEEEEEEEEcCCCCEEEEEcCE-EEECCCH-----HHH-----HHhcC
Confidence 3466789999999999998885 55555443 444443 3343 578999 9999776 333 45665
Q ss_pred CcccchhhhhhhccCCCCCceEEEEe--ecccCCCCCcceEeeeCCCCeEEEEcCCCCCCCCCCCCeeEEEEEEeccccc
Q psy895 74 NSKTEFESVRRTCTSKLDISLFMVDH--VCMYEGSGRGHMCFCESDRPMIEMVLPSSLDNTLSPPGHHVCLLFTQFTPYK 151 (269)
Q Consensus 74 ~~~~~~~~~~r~~~~~~s~s~f~vyl--~~~~~~~~~~~i~~~~~~~p~~~v~~ps~~Dp~~AP~G~~~l~i~~~~~p~~ 151 (269)
+. .++...+.++++++. +.+++++ +... ....+-++...+..+.--+..++..+|..+|+|++ ..+...+..+.
T Consensus 287 ~~-~~~~~~~~~~~l~~~-~~~~v~l~~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~p~g~~-~~l~~~~~~~~ 362 (479)
T PRK07208 287 PP-PPPEVRAAAAGLRYR-DFITVGLLVKELN-LFPDNWIYIHDPDVKVGRLQNFNNWSPYLVPDGRD-TWLGLEYFCFE 362 (479)
T ss_pred CC-CCHHHHHHHhCCCcc-eeEEEEEEecCCC-CCCCceEEecCCCCccceecccccCCcccCCCCCc-eEEEEEEEccC
Confidence 32 344555666666654 4677777 3322 12222122111111222234456667899999986 33322111121
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHHHHHCCCC-CcceEEEEec-ChhHHHHhhCCCCCccccccccccccccCCCCCCCCCC
Q psy895 152 LAGDRDWTEEDKANYATNVFSSIEQYCPGF-TQDIVGYEIL-TPPDLEKEFGLTGGNIFHGALSLNQLLFNRPLPIQGPS 229 (269)
Q Consensus 152 ~~~g~~w~~~~K~~~a~~il~~le~~~P~i-~~~I~~~~~~-TP~t~~~y~~~~~GsiyG~~~~~~q~~~~rp~~~~~~~ 229 (269)
.+.-|. .-.+++.+++++.|++..+ + .+.++...+. -|..+--| .. |........ +
T Consensus 363 --~~~~~~-~~deel~~~~~~~L~~l~~-~~~~~~~~~~v~r~~~a~P~y----~~---~~~~~~~~~---~-------- 420 (479)
T PRK07208 363 --GDDLWN-MSDEDLIALAIQELARLGL-IRPADVEDGFVVRVPKAYPVY----DG---TYERNVEII---R-------- 420 (479)
T ss_pred --CCcccc-CCHHHHHHHHHHHHHHcCC-CChhheeEEEEEEecCcccCC----Cc---hHHHHHHHH---H--------
Confidence 112343 2456789999999999643 3 4555443322 12111111 00 111111111 1
Q ss_pred CCCCCCCcEEEcCCCCCCCC-Cccc--hHHHHHHHHHHHH
Q psy895 230 SPFTLIPHLLLCGSGAHPGG-GVCG--APGYIAAQMVNRL 266 (269)
Q Consensus 230 ~~~t~i~nLyl~G~~~~pG~-Gv~g--vsg~~~a~~il~~ 266 (269)
...++.+|||++|....... .+-+ .||+.+|++|.+.
T Consensus 421 ~~~~~~~~l~laGr~~~~~~~~~d~a~~sg~~~a~~i~~~ 460 (479)
T PRK07208 421 DLLDHFPNLHLVGRNGMHRYNNQDHSMLTAMLAVENIIAG 460 (479)
T ss_pred HHHHhcCCceeeccccccccCChhHHHHHHHHHHHHHhcC
Confidence 11245799999996553322 3323 3999999998765
No 15
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=98.30 E-value=9e-06 Score=77.63 Aligned_cols=213 Identities=13% Similarity=0.106 Sum_probs=113.2
Q ss_pred Ceeeeee---eeeeeceeeEEEecCCCccCccCCCCCCCCCCCCCCCcccccccccccccCcccchhhhhhhccCCCCCc
Q psy895 17 GKRLRKI---TLVIRTRSIYCYECDSWKDRRCLDPFNYSVLPIHQPALNPCNGCCVKMVRNSKTEFESVRRTCTSKLDIS 93 (269)
Q Consensus 17 g~~~~~~---~~~~~~~~i~~~~~~~~~~~~~~~~fi~~~~p~~~~~~~~~~~~~~~Ll~~~~~~~~~~~r~~~~~~s~s 93 (269)
++|..+. ++...+..+ .+++++++...|+. +|+++.+ -+. .+|+++ .+....+.+.+++++ +
T Consensus 238 ~~i~~~~~V~~I~~~~~~~-~v~~~~g~~~~ad~-VI~t~P~-----~~~-----~~ll~~--~~~~~~~~l~~l~~~-~ 302 (462)
T TIGR00562 238 TKVYKGTKVTKLSHRGSNY-TLELDNGVTVETDS-VVVTAPH-----KAA-----AGLLSE--LSNSASSHLDKIHSP-P 302 (462)
T ss_pred CeEEcCCeEEEEEecCCcE-EEEECCCcEEEcCE-EEECCCH-----HHH-----HHHhcc--cCHHHHHHHhcCCCC-c
Confidence 5666663 444444333 46778888889999 9998665 222 456643 334555677777764 3
Q ss_pred eEEEEe--ecc-cCCCCCcceEeeeCCC---CeEEEEcCCCCCCCCCCCCeeEEEEEEecccccCCCCCCCcHHHHHHHH
Q psy895 94 LFMVDH--VCM-YEGSGRGHMCFCESDR---PMIEMVLPSSLDNTLSPPGHHVCLLFTQFTPYKLAGDRDWTEEDKANYA 167 (269)
Q Consensus 94 ~f~vyl--~~~-~~~~~~~~i~~~~~~~---p~~~v~~ps~~Dp~~AP~G~~~l~i~~~~~p~~~~~g~~w~~~~K~~~a 167 (269)
..++.+ +.. ++.-... .++..++. +.+-+...+..-|..+|+|+..++++.. ... +.++.+.-.+++.
T Consensus 303 ~~~v~l~~~~~~~~~~~~~-~g~l~~~~~~~~~~~~i~~s~~~p~~~p~g~~~l~~~~~-g~~----~~~~~~~~~ee~~ 376 (462)
T TIGR00562 303 VANVNLGFPEGSVDGELEG-FGFLISRSSKFAILGCIFTSKLFPNRAPPGKTLLTAYIG-GAT----DESIVDLSENEII 376 (462)
T ss_pred eEEEEEEEchHHcCCCCCc-eEEEccCCCCCceEEEEEEccccCCcCCCCcEEEEEEeC-CCC----CccccCCCHHHHH
Confidence 444444 332 2211111 21112322 3334444555567888988887766543 111 1122222456789
Q ss_pred HHHHHHHHHHCCCCCcceEEEEecChhHHHHhhCCCCCccccccccccccccCCCCCCCCCCCCCCCCCcEEEcCCCCCC
Q psy895 168 TNVFSSIEQYCPGFTQDIVGYEILTPPDLEKEFGLTGGNIFHGALSLNQLLFNRPLPIQGPSSPFTLIPHLLLCGSGAHP 247 (269)
Q Consensus 168 ~~il~~le~~~P~i~~~I~~~~~~TP~t~~~y~~~~~GsiyG~~~~~~q~~~~rp~~~~~~~~~~t~i~nLyl~G~~~~p 247 (269)
+.+++.|.+.++ +...++...+. .|+ + ..+.=+. |......+. ++ ...++.+|||++|+|..
T Consensus 377 ~~v~~~L~~~~g-i~~~p~~~~v~---rw~-~-a~P~~~~-g~~~~~~~i---~~-------~l~~~~~~l~l~G~~~~- 438 (462)
T TIGR00562 377 NIVLRDLKKVLN-INNEPEMLCVT---RWH-R-AIPQYHV-GHDQRLKEA---RE-------LLESAYPGVFLTGNSFE- 438 (462)
T ss_pred HHHHHHHHHHhC-CCCCCcEEEEe---Ecc-c-cCCCCCC-ChHHHHHHH---HH-------HHHhhCCCEEEeccccC-
Confidence 999999999875 44333332211 011 0 0100000 110111110 11 01233579999999975
Q ss_pred CCCccch--HHHHHHHHHHHHhc
Q psy895 248 GGGVCGA--PGYIAAQMVNRLMR 268 (269)
Q Consensus 248 G~Gv~gv--sg~~~a~~il~~~~ 268 (269)
|.|+.++ +|..+|+++++.+.
T Consensus 439 g~~i~~~i~sg~~~a~~~~~~~~ 461 (462)
T TIGR00562 439 GVGIPDCIDQGKAAASDVLTFLF 461 (462)
T ss_pred CCcHHHHHHHHHHHHHHHHHhhc
Confidence 6688874 99999999987653
No 16
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=97.85 E-value=0.00016 Score=69.27 Aligned_cols=225 Identities=10% Similarity=0.011 Sum_probs=111.6
Q ss_pred hhhhhHHHHHHhcCeeeeee---eeeeeceeeEEEecCCCccCccCCCCCCCCCCCCCCCcccccccccccccCcccchh
Q psy895 4 LSFLKDKEIEKKGGKRLRKI---TLVIRTRSIYCYECDSWKDRRCLDPFNYSVLPIHQPALNPCNGCCVKMVRNSKTEFE 80 (269)
Q Consensus 4 ~~~~~~~~i~~~gg~~~~~~---~~~~~~~~i~~~~~~~~~~~~~~~~fi~~~~p~~~~~~~~~~~~~~~Ll~~~~~~~~ 80 (269)
|.+.|.+.|++ ++|..+. .++..+.++ .+.+++++.+.|+. +|.++.+ .+. .+|+.+. .
T Consensus 228 l~~~l~~~l~~--~~i~~~~~V~~I~~~~~~~-~v~~~~g~~~~ad~-VI~a~p~-----~~~-----~~ll~~~----~ 289 (463)
T PRK12416 228 IIDRLEEVLTE--TVVKKGAVTTAVSKQGDRY-EISFANHESIQADY-VVLAAPH-----DIA-----ETLLQSN----E 289 (463)
T ss_pred HHHHHHHhccc--ccEEcCCEEEEEEEcCCEE-EEEECCCCEEEeCE-EEECCCH-----HHH-----HhhcCCc----c
Confidence 44555555544 5677664 555555543 56677777789999 9999754 122 4466542 2
Q ss_pred hhhhhccCCCCCceEEEEe--ecccCCCCCcceEeeeCC-CCe--EEEEcCCCCCCCCCCCCeeEEEEEEecccccCCCC
Q psy895 81 SVRRTCTSKLDISLFMVDH--VCMYEGSGRGHMCFCESD-RPM--IEMVLPSSLDNTLSPPGHHVCLLFTQFTPYKLAGD 155 (269)
Q Consensus 81 ~~~r~~~~~~s~s~f~vyl--~~~~~~~~~~~i~~~~~~-~p~--~~v~~ps~~Dp~~AP~G~~~l~i~~~~~p~~~~~g 155 (269)
....+.+++. .+.+++++ +.....++....-+..++ .+. .-+..++..-+..+|+++..+.++. -..-...
T Consensus 290 l~~~~~~~~~-~~~~~v~l~~~~~~~~~~~~g~G~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~~~---~~~~~~~ 365 (463)
T PRK12416 290 LNEQFHTFKN-SSLISIYLGFDILDEQLPADGTGFIVTENSDLHCDACTWTSRKWKHTSGKQKLLVRMFY---KSTNPVY 365 (463)
T ss_pred hhHHHhcCCC-CceEEEEEEechhhcCCCCCceEEEeeCCCCCeEEEEEeecCCCCCcCCCCeEEEEEEe---CCCCCCc
Confidence 3344555554 47778887 433222221111011122 221 1222233323334454443333222 1100000
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHCCCCCcceEEEEecChhHHHHhhCCCCCccccccccccccccCCCCCCCCCCCCCCCC
Q psy895 156 RDWTEEDKANYATNVFSSIEQYCPGFTQDIVGYEILTPPDLEKEFGLTGGNIFHGALSLNQLLFNRPLPIQGPSSPFTLI 235 (269)
Q Consensus 156 ~~w~~~~K~~~a~~il~~le~~~P~i~~~I~~~~~~TP~t~~~y~~~~~GsiyG~~~~~~q~~~~rp~~~~~~~~~~t~i 235 (269)
.++.+.-.+++.+.+++.|++.+. +....+...+. .|.. ..+...+ |......+. ++ ..+.+.
T Consensus 366 ~~~~~~~dee~~~~~~~~L~~~lG-~~~~p~~~~v~---~W~~--a~P~y~~-~~~~~~~~~---~~-------~l~~~~ 428 (463)
T PRK12416 366 ETIKNYSEEELVRVALYDIEKSLG-IKGEPEVVEVT---NWKD--LMPKYHL-EHNQAVQSL---QE-------KMMNLY 428 (463)
T ss_pred hhhhcCCHHHHHHHHHHHHHHHhC-CCCCceEEEEE---Eccc--cCCCcCc-CHHHHHHHH---HH-------HHHhhC
Confidence 112111246788999999999874 43332222211 1111 1222221 211111111 11 112335
Q ss_pred CcEEEcCCCCCCCCCccch--HHHHHHHHHHHHhc
Q psy895 236 PHLLLCGSGAHPGGGVCGA--PGYIAAQMVNRLMR 268 (269)
Q Consensus 236 ~nLyl~G~~~~pG~Gv~gv--sg~~~a~~il~~~~ 268 (269)
+|||++|++.. |.|+.++ ||..+|++|++.+.
T Consensus 429 ~~l~~aG~~~~-g~~i~~ai~sg~~aA~~i~~~~~ 462 (463)
T PRK12416 429 PNIYLAGASYY-GVGIGACIGNGKNTANEIIATLN 462 (463)
T ss_pred CCeEEeccccc-cccHHHHHHHHHHHHHHHHHHhh
Confidence 89999999975 6788874 99999999997653
No 17
>PLN02576 protoporphyrinogen oxidase
Probab=97.55 E-value=0.00073 Score=65.30 Aligned_cols=223 Identities=12% Similarity=0.021 Sum_probs=107.5
Q ss_pred hHHHHHH-hc-Ceeeeee---eeeeecee---eEEEecCCC-ccCccCCCCCCCCCCCCCCCcccccccccccccCcccc
Q psy895 8 KDKEIEK-KG-GKRLRKI---TLVIRTRS---IYCYECDSW-KDRRCLDPFNYSVLPIHQPALNPCNGCCVKMVRNSKTE 78 (269)
Q Consensus 8 ~~~~i~~-~g-g~~~~~~---~~~~~~~~---i~~~~~~~~-~~~~~~~~fi~~~~p~~~~~~~~~~~~~~~Ll~~~~~~ 78 (269)
|++.|.+ .| ++|..+. .++..+.. ++ +.++++ +...|+. +|+++.+ .+. .+|+.+ ..
T Consensus 241 L~~~la~~l~~~~i~l~~~V~~I~~~~~~~~~v~-~~~~~g~~~~~ad~-VI~a~P~-----~~l-----~~ll~~--~~ 306 (496)
T PLN02576 241 LPDALAKRLGKDKVKLNWKVLSLSKNDDGGYSLT-YDTPEGKVNVTAKA-VVMTAPL-----YVV-----SEMLRP--KS 306 (496)
T ss_pred HHHHHHHhhCcCcEEcCCEEEEEEECCCCcEEEE-EecCCCceeEEeCE-EEECCCH-----HHH-----HHHhcc--cC
Confidence 4444433 34 5666664 44333332 33 344455 3689999 9999765 222 445543 23
Q ss_pred hhhhhhhccCCCCCceEEEEe--ecc-cCCC-----CCcceEeeeCC---CCeEEEEcCCCCCCCCCCCCeeEEEEEEec
Q psy895 79 FESVRRTCTSKLDISLFMVDH--VCM-YEGS-----GRGHMCFCESD---RPMIEMVLPSSLDNTLSPPGHHVCLLFTQF 147 (269)
Q Consensus 79 ~~~~~r~~~~~~s~s~f~vyl--~~~-~~~~-----~~~~i~~~~~~---~p~~~v~~ps~~Dp~~AP~G~~~l~i~~~~ 147 (269)
+...+.+.++++.. ..++.+ +.. ++.- ....+-...+. .+.+.+...+...|.++|+|+..+.+++.
T Consensus 307 ~~~~~~l~~~~~~~-~~~v~l~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~lg~~~~s~~~p~~~~~~~~~l~~~~~- 384 (496)
T PLN02576 307 PAAADALPEFYYPP-VAAVTTSYPKEAVKRERLIDGPLEGFGQLHPRKQGVKTLGTIYSSSLFPDRAPEGRVLLLNYIG- 384 (496)
T ss_pred HHHHHHhccCCCCc-eEEEEEEEchHHcccccccCCCCCceEEEccCCCCCceEEEEeecCcCCCCCCCCCEEEEEEEC-
Confidence 44556677766643 333443 332 2210 00001000121 13343444556667788877665554432
Q ss_pred ccccCCCCCCCcHHHHHHHHHHHHHHHHHHCCCCC-cceEEEEecChhHHHHhhCCCCCccccccccccccccCCCCCCC
Q psy895 148 TPYKLAGDRDWTEEDKANYATNVFSSIEQYCPGFT-QDIVGYEILTPPDLEKEFGLTGGNIFHGALSLNQLLFNRPLPIQ 226 (269)
Q Consensus 148 ~p~~~~~g~~w~~~~K~~~a~~il~~le~~~P~i~-~~I~~~~~~TP~t~~~y~~~~~GsiyG~~~~~~q~~~~rp~~~~ 226 (269)
-.. ...+.+.-.+++.+.+++.|.+.++.-. .......+. .|.. ..+ .|...+..... ..+-
T Consensus 385 ~~~----~~~~~~~s~ee~~~~~~~~L~~~~g~~~~~~p~~~~~~---~w~~--a~P---~~~~g~~~~~~-~~~~---- 447 (496)
T PLN02576 385 GSR----NTGIASASEEELVEAVDRDLRKLLLKPGAPPPKVVGVR---VWPK--AIP---QYLLGHLDVLE-AAEK---- 447 (496)
T ss_pred CCC----CcccccCCHHHHHHHHHHHHHHHhCCCCCCCCcEEEEe---EcCc--ccC---CCCcCHHHHHH-HHHH----
Confidence 111 1112212356788999999999876321 111111110 1110 011 11111100000 0000
Q ss_pred CCCCCCCC-CCcEEEcCCCCCCCCCccch--HHHHHHHHHHHHh
Q psy895 227 GPSSPFTL-IPHLLLCGSGAHPGGGVCGA--PGYIAAQMVNRLM 267 (269)
Q Consensus 227 ~~~~~~t~-i~nLyl~G~~~~pG~Gv~gv--sg~~~a~~il~~~ 267 (269)
.-... .+|||++|++.. |.||.++ ||..+|++|+..+
T Consensus 448 ---~l~~~~~~~l~~aG~~~~-g~~i~~ai~sg~~aA~~i~~~~ 487 (496)
T PLN02576 448 ---MEKDLGLPGLFLGGNYRG-GVALGKCVESGYEAADLVISYL 487 (496)
T ss_pred ---HHHhcCCCCEEEeccccC-CccHHHHHHHHHHHHHHHHHHH
Confidence 00111 279999999996 6788874 9999999998765
No 18
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=97.41 E-value=0.0028 Score=60.71 Aligned_cols=218 Identities=9% Similarity=-0.068 Sum_probs=123.2
Q ss_pred hhhhhHHHHHHhcCeeeeee---eeeeeceeeEEEecCCCccCccCCCCCCCCCCCCCCCcccccccccccccCcccchh
Q psy895 4 LSFLKDKEIEKKGGKRLRKI---TLVIRTRSIYCYECDSWKDRRCLDPFNYSVLPIHQPALNPCNGCCVKMVRNSKTEFE 80 (269)
Q Consensus 4 ~~~~~~~~i~~~gg~~~~~~---~~~~~~~~i~~~~~~~~~~~~~~~~fi~~~~p~~~~~~~~~~~~~~~Ll~~~~~~~~ 80 (269)
|.+.|.+.++.. +..+. .+..++. -...+.+++.+..++. +|+++.+ .+. .+|+++. .
T Consensus 217 l~~al~~~l~~~---i~~~~~V~~i~~~~~-~~~~~~~~g~~~~~D~-VI~t~p~-----~~l-----~~ll~~~----~ 277 (444)
T COG1232 217 LIEALAEKLEAK---IRTGTEVTKIDKKGA-GKTIVDVGGEKITADG-VISTAPL-----PEL-----ARLLGDE----A 277 (444)
T ss_pred HHHHHHHHhhhc---eeecceeeEEEEcCC-ccEEEEcCCceEEcce-EEEcCCH-----HHH-----HHHcCCc----c
Confidence 445566666655 44443 4444422 2234445566689999 9999766 222 5677762 2
Q ss_pred hhhhhccCCCCCceEEEEe-e-cccCCCCCcceEeeeC-CCC-eEEEEcCCCCCCCCCCCCeeEEEEEEecccccCCCCC
Q psy895 81 SVRRTCTSKLDISLFMVDH-V-CMYEGSGRGHMCFCES-DRP-MIEMVLPSSLDNTLSPPGHHVCLLFTQFTPYKLAGDR 156 (269)
Q Consensus 81 ~~~r~~~~~~s~s~f~vyl-~-~~~~~~~~~~i~~~~~-~~p-~~~v~~ps~~Dp~~AP~G~~~l~i~~~~~p~~~~~g~ 156 (269)
..+-..+++++..+.++.. + ...+.++ ++.|+..+ +.| ..-++.+|+.=|-.+|.|++.+.+... .+.+. ..
T Consensus 278 ~~~~~~~~~~~s~~~vv~~~~~~~~~~~~-~~~g~~iad~~~~~~a~~~~S~~~p~~~p~g~~ll~~~~~-~~g~~--~~ 353 (444)
T COG1232 278 VSKAAKELQYTSVVTVVVGLDEKDNPALP-DGYGLLIADDDPYILAITFHSNKWPHEAPEGKTLLRVEFG-GPGDE--SV 353 (444)
T ss_pred hhhhhhhccccceEEEEEEeccccccCCC-CceEEEEecCCCcceeEEEecccCCCCCCCCcEEEEEEee-cCCCc--ch
Confidence 2234455555444444443 3 3333333 34454433 344 567778889999999999998888765 33320 01
Q ss_pred CCcHHHHHHHHHHHHHHHHHHCCCCCcceEEEEecChhHHHHhhCCCCCccccccccccccccCCCCCCCCCCCCCCCCC
Q psy895 157 DWTEEDKANYATNVFSSIEQYCPGFTQDIVGYEILTPPDLEKEFGLTGGNIFHGALSLNQLLFNRPLPIQGPSSPFTLIP 236 (269)
Q Consensus 157 ~w~~~~K~~~a~~il~~le~~~P~i~~~I~~~~~~TP~t~~~y~~~~~GsiyG~~~~~~q~~~~rp~~~~~~~~~~t~i~ 236 (269)
.| ..-+++.++.++.|.+.++...+-+.+... |+ ...-=.|+..+.-+.. ..|. .-++-.+
T Consensus 354 ~~--~~dee~~~~~l~~L~~~~~~~~~~~~~~v~-------r~--~~~~PqY~vG~~~~~~-~ir~-------~l~~~y~ 414 (444)
T COG1232 354 ST--MSDEELVAAVLDDLKKLGGINGDPVFVEVT-------RW--KYAMPQYEVGHLDRLE-PIRA-------ALKGAYP 414 (444)
T ss_pred hc--cCHHHHHHHHHHHHHHHcCcCcchhheeee-------ec--cccCCccchhHHHHHH-HHHH-------hhccccC
Confidence 12 124789999999999998877655422211 11 1111144443332221 1111 1122238
Q ss_pred cEEEcCCCCCCCCCccch--HHHHHHHHHH
Q psy895 237 HLLLCGSGAHPGGGVCGA--PGYIAAQMVN 264 (269)
Q Consensus 237 nLyl~G~~~~pG~Gv~gv--sg~~~a~~il 264 (269)
|++++|+|-. |.|++.+ +|..++++++
T Consensus 415 gi~~~G~~~~-g~g~~d~I~~g~~aa~~l~ 443 (444)
T COG1232 415 GIKSVGRYGE-GVGLPDCIAAGKEAAEQLL 443 (444)
T ss_pred CeEEeccCCC-CCCchHHHHHHHHHHHHhh
Confidence 9999999995 4688863 8888888875
No 19
>PLN02268 probable polyamine oxidase
Probab=96.81 E-value=0.012 Score=55.78 Aligned_cols=220 Identities=11% Similarity=0.018 Sum_probs=105.1
Q ss_pred hhHHHHHHhcCeeeeee---eeeeeceeeEEEecCCCccCccCCCCCCCCCCCCCCCcccccccccc-ccc-Ccccchhh
Q psy895 7 LKDKEIEKKGGKRLRKI---TLVIRTRSIYCYECDSWKDRRCLDPFNYSVLPIHQPALNPCNGCCVK-MVR-NSKTEFES 81 (269)
Q Consensus 7 ~~~~~i~~~gg~~~~~~---~~~~~~~~i~~~~~~~~~~~~~~~~fi~~~~p~~~~~~~~~~~~~~~-Ll~-~~~~~~~~ 81 (269)
.|++.|.+ |.++..+. .+...+..+ .+.+.+++.+.|+. +|.++.+-. . -+ ++. ...++...
T Consensus 202 ~l~~~l~~-~~~i~~~~~V~~i~~~~~~v-~v~~~~g~~~~ad~-VIva~P~~~-----l-----~~~~i~f~p~lp~~~ 268 (435)
T PLN02268 202 PVINTLAK-GLDIRLNHRVTKIVRRYNGV-KVTVEDGTTFVADA-AIIAVPLGV-----L-----KANIIKFEPELPEWK 268 (435)
T ss_pred HHHHHHhc-cCceeCCCeeEEEEEcCCcE-EEEECCCcEEEcCE-EEEecCHHH-----H-----hcCcceecCCCCHHH
Confidence 45566644 44555553 444444443 47788888889999 888854411 1 00 121 22345555
Q ss_pred hhhhccCCCCCceEEEEe--ecc-cCCCCCcceEeeeCC-CCeEEEEcCCCCCCCCCCCCeeEEEEEEecccccCCCCCC
Q psy895 82 VRRTCTSKLDISLFMVDH--VCM-YEGSGRGHMCFCESD-RPMIEMVLPSSLDNTLSPPGHHVCLLFTQFTPYKLAGDRD 157 (269)
Q Consensus 82 ~~r~~~~~~s~s~f~vyl--~~~-~~~~~~~~i~~~~~~-~p~~~v~~ps~~Dp~~AP~G~~~l~i~~~~~p~~~~~g~~ 157 (269)
.+.++++.++... -+++ +.. +++.. ......+. .+..+.... . .+.|+..+..+.. -+. ..+
T Consensus 269 ~~ai~~~~~g~~~-Kv~l~f~~~fw~~~~--~~g~~~~~~~~~~~~~~~-----~-~~~g~~~l~~~~~-g~~----a~~ 334 (435)
T PLN02268 269 EEAISDLGVGIEN-KIALHFDSVFWPNVE--FLGVVAPTSYGCSYFLNL-----H-KATGHPVLVYMPA-GRL----ARD 334 (435)
T ss_pred HHHHHhCCcccee-EEEEEeCCCCCCCCc--eeeccCCCCCCceEEEec-----c-cCCCCCEEEEEec-cHH----HHH
Confidence 5667776654322 2333 443 33211 00000111 111121111 0 1135555554432 111 012
Q ss_pred CcHHHHHHHHHHHHHHHHHHCCCCCcceEEEEecChhHHHHhhCCCCCccccccccccccccCCCCCCCCCCCCCCCCCc
Q psy895 158 WTEEDKANYATNVFSSIEQYCPGFTQDIVGYEILTPPDLEKEFGLTGGNIFHGALSLNQLLFNRPLPIQGPSSPFTLIPH 237 (269)
Q Consensus 158 w~~~~K~~~a~~il~~le~~~P~i~~~I~~~~~~TP~t~~~y~~~~~GsiyG~~~~~~q~~~~rp~~~~~~~~~~t~i~n 237 (269)
+.+.-.++..+.+++.|.+.+|...+-+.... ..|...- ...|+.-... +.+....++ ..+.|+.+
T Consensus 335 ~~~~~~~e~~~~v~~~L~~~~~~~~~p~~~~~----~~W~~dp-~~~G~~~~~~--~g~~~~~~~-------~l~~p~~~ 400 (435)
T PLN02268 335 IEKLSDEAAANFAMSQLKKMLPDATEPVQYLV----SRWGSDP-NSLGCYSYDL--VGKPHDLYE-------RLRAPVDN 400 (435)
T ss_pred HHhCCHHHHHHHHHHHHHHHcCCCCCccEEEe----cccCCCC-CCCccCCCCC--CCCCHHHHH-------HHhCCCCC
Confidence 22222467888999999999986443332221 1222211 1123221111 111100111 23567889
Q ss_pred EEEcCCCCCCCC-C-ccch--HHHHHHHHHHHHh
Q psy895 238 LLLCGSGAHPGG-G-VCGA--PGYIAAQMVNRLM 267 (269)
Q Consensus 238 Lyl~G~~~~pG~-G-v~gv--sg~~~a~~il~~~ 267 (269)
|||+|..+...+ | +-|+ ||..+|++|+..+
T Consensus 401 l~FAGe~ts~~~~g~~eGA~~sG~raA~~v~~~l 434 (435)
T PLN02268 401 LFFAGEATSSDFPGSVHGAYSTGVMAAEECRMRL 434 (435)
T ss_pred eEEeeccCCCcccccHHHHHHHHHHHHHHHHHhh
Confidence 999999987532 4 4454 9999999998653
No 20
>PLN02676 polyamine oxidase
Probab=96.42 E-value=0.021 Score=55.54 Aligned_cols=37 Identities=19% Similarity=0.261 Sum_probs=28.6
Q ss_pred CCCCCcEEEcCCCCCCC-CC-ccch--HHHHHHHHHHHHhc
Q psy895 232 FTLIPHLLLCGSGAHPG-GG-VCGA--PGYIAAQMVNRLMR 268 (269)
Q Consensus 232 ~t~i~nLyl~G~~~~pG-~G-v~gv--sg~~~a~~il~~~~ 268 (269)
+.|+.+|||+|..+... .| +.|+ ||..+|++|++.+.
T Consensus 434 ~~P~gri~FAGe~ts~~~~g~~eGA~~SG~RaA~~I~~~l~ 474 (487)
T PLN02676 434 RAPVGRVYFTGEHTSEKYNGYVHGAYLAGIDTANDLLECIK 474 (487)
T ss_pred hCCCCceEEeccccccccccchHHHHHHHHHHHHHHHHHhc
Confidence 45788999999988753 24 4464 99999999998753
No 21
>PLN02568 polyamine oxidase
Probab=95.71 E-value=0.074 Score=52.44 Aligned_cols=34 Identities=24% Similarity=0.269 Sum_probs=26.5
Q ss_pred CCCcEEEcCCCCCCCC-C-ccch--HHHHHHHHHHHHh
Q psy895 234 LIPHLLLCGSGAHPGG-G-VCGA--PGYIAAQMVNRLM 267 (269)
Q Consensus 234 ~i~nLyl~G~~~~pG~-G-v~gv--sg~~~a~~il~~~ 267 (269)
|...|||+|-.++..+ | |.|+ ||..+|++|+..+
T Consensus 498 ~~~~l~FAGEat~~~~~~Tv~GA~~SG~RaA~~i~~~~ 535 (539)
T PLN02568 498 PPLQLLFAGEATHRTHYSTTHGAYFSGLREANRLLQHY 535 (539)
T ss_pred CCccEEEeecccCCCccchHHHHHHHHHHHHHHHHHHh
Confidence 3447999998887654 4 5564 9999999999765
No 22
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=94.59 E-value=1.5 Score=39.57 Aligned_cols=47 Identities=19% Similarity=0.140 Sum_probs=36.6
Q ss_pred hhhhhHHHHHHhcCeeeeee---eeeeeceeeEEEecCCCccCccCCCCCCC
Q psy895 4 LSFLKDKEIEKKGGKRLRKI---TLVIRTRSIYCYECDSWKDRRCLDPFNYS 52 (269)
Q Consensus 4 ~~~~~~~~i~~~gg~~~~~~---~~~~~~~~i~~~~~~~~~~~~~~~~fi~~ 52 (269)
|...|.+.+++.|++++.+. .++..+.++..+.++++ ..+|+. +|..
T Consensus 139 l~~~l~~~~~~~g~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~-vV~a 188 (337)
T TIGR02352 139 LLKALEKALEKLGVEIIEHTEVQHIEIRGEKVTAIVTPSG-DVQADQ-VVLA 188 (337)
T ss_pred HHHHHHHHHHHcCCEEEccceEEEEEeeCCEEEEEEcCCC-EEECCE-EEEc
Confidence 55678889999999999874 66666777889999887 577888 4444
No 23
>PLN02529 lysine-specific histone demethylase 1
Probab=94.43 E-value=0.42 Score=48.94 Aligned_cols=34 Identities=21% Similarity=0.288 Sum_probs=26.3
Q ss_pred CCcEEEcCCCCCCCC-C-ccch--HHHHHHHHHHHHhc
Q psy895 235 IPHLLLCGSGAHPGG-G-VCGA--PGYIAAQMVNRLMR 268 (269)
Q Consensus 235 i~nLyl~G~~~~pG~-G-v~gv--sg~~~a~~il~~~~ 268 (269)
..+|||+|..+.+++ | |.|+ ||..+|++|+..++
T Consensus 562 ~grL~FAGEaTs~~~pgtVeGAi~SG~RAA~eIl~~l~ 599 (738)
T PLN02529 562 SGRLFFAGEATTRQYPATMHGAFLSGLREASRILHVAR 599 (738)
T ss_pred CCCEEEEEHHHhCCCCeEeHHHHHHHHHHHHHHHHHHh
Confidence 368999999997643 3 3464 99999999998653
No 24
>PLN02976 amine oxidase
Probab=93.96 E-value=0.48 Score=51.69 Aligned_cols=35 Identities=20% Similarity=0.321 Sum_probs=26.7
Q ss_pred CCCCc-EEEcCCCCCCCC-C-ccch--HHHHHHHHHHHHh
Q psy895 233 TLIPH-LLLCGSGAHPGG-G-VCGA--PGYIAAQMVNRLM 267 (269)
Q Consensus 233 t~i~n-Lyl~G~~~~pG~-G-v~gv--sg~~~a~~il~~~ 267 (269)
.|+.| |||+|..+.+.+ | |.|+ ||..+|++|+..+
T Consensus 1147 ePVggRLFFAGEATS~~~pGTVHGAIeSG~RAA~eIL~~L 1186 (1713)
T PLN02976 1147 RPVENCLFFAGEATCKEHPDTVGGAMMSGLREAVRIIDIL 1186 (1713)
T ss_pred CCCCCcEEEEehhhhCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 45777 999998876533 4 3464 9999999999876
No 25
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=93.69 E-value=0.12 Score=50.11 Aligned_cols=89 Identities=19% Similarity=0.253 Sum_probs=60.5
Q ss_pred CCcHHHHHHHHHHHHHHHHHHCCCCC-cceEEEEecChhHHHHhhCCCCCccccccccccccccCCCCCCCCCCCCCCCC
Q psy895 157 DWTEEDKANYATNVFSSIEQYCPGFT-QDIVGYEILTPPDLEKEFGLTGGNIFHGALSLNQLLFNRPLPIQGPSSPFTLI 235 (269)
Q Consensus 157 ~w~~~~K~~~a~~il~~le~~~P~i~-~~I~~~~~~TP~t~~~y~~~~~GsiyG~~~~~~q~~~~rp~~~~~~~~~~t~i 235 (269)
+|..+..++......+.++..+|... ..+....+-++... |+..... ...|| +.+||+
T Consensus 369 ~~~~~~~~~~~a~~e~~~~~~vP~~~~a~~~~~~i~~~q~~-----------~~~~pgs---~~~rP-------~~~Tpv 427 (485)
T COG3349 369 PFLFESDEAIVATFEKELYELVPSLAEAKLKSSVLVNQQSL-----------YGLAPGS---YHYRP-------EQKTPI 427 (485)
T ss_pred cccccchhhHHHHHHHHhhhcCCchhcccccccceeccccc-----------cccCCCc---cccCC-------CCCCCc
Confidence 45555677888888888888788764 44444555555443 2222222 23577 789999
Q ss_pred CcEEEcCCCCCCCCCcc---c--hHHHHHHHHHHHHh
Q psy895 236 PHLLLCGSGAHPGGGVC---G--APGYIAAQMVNRLM 267 (269)
Q Consensus 236 ~nLyl~G~~~~pG~Gv~---g--vsg~~~a~~il~~~ 267 (269)
+||+++|+++..- .+. + +||+.||+.|+...
T Consensus 428 ~N~~laGd~~~~~-~~~smE~A~~sGl~AA~~v~~~~ 463 (485)
T COG3349 428 PNLLLAGDYTKQP-YLGSMEGATLSGLLAANAILDNL 463 (485)
T ss_pred cchhhccceeecC-CcCccchhhhhHHHHHHHHHHhh
Confidence 9999999999742 333 3 39999999998653
No 26
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=93.11 E-value=0.88 Score=47.04 Aligned_cols=33 Identities=21% Similarity=0.341 Sum_probs=25.2
Q ss_pred CcEEEcCCCCCCCC-C-ccch--HHHHHHHHHHHHhc
Q psy895 236 PHLLLCGSGAHPGG-G-VCGA--PGYIAAQMVNRLMR 268 (269)
Q Consensus 236 ~nLyl~G~~~~pG~-G-v~gv--sg~~~a~~il~~~~ 268 (269)
.+|||+|..+...+ | |.|+ ||..+|++|+..++
T Consensus 644 GRL~FAGEaTs~~~~GtVhGAi~SGlRAA~eIl~~~~ 680 (808)
T PLN02328 644 GRVFFAGEATNKQYPATMHGAFLSGMREAANILRVAR 680 (808)
T ss_pred CCEEEEEhhHhCCCCeEhHHHHHHHHHHHHHHHHHHh
Confidence 47999999987432 3 4564 99999999998653
No 27
>PLN03000 amine oxidase
Probab=91.41 E-value=1.6 Score=45.40 Aligned_cols=33 Identities=18% Similarity=0.264 Sum_probs=24.8
Q ss_pred CcEEEcCCCCCCCC-C-ccch--HHHHHHHHHHHHhc
Q psy895 236 PHLLLCGSGAHPGG-G-VCGA--PGYIAAQMVNRLMR 268 (269)
Q Consensus 236 ~nLyl~G~~~~pG~-G-v~gv--sg~~~a~~il~~~~ 268 (269)
.+|||+|..+...+ | |.|+ ||..+|++|+..++
T Consensus 588 GRIfFAGEaTs~~~~GTVhGAieSGlRAA~eIl~~l~ 624 (881)
T PLN03000 588 GRLFFAGEATTRRYPATMHGAFVTGLREAANMAQSAK 624 (881)
T ss_pred CcEEEeehHHhCCCCeeHHHHHHHHHHHHHHHHHHhh
Confidence 37999998886422 3 4564 99999999998653
No 28
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=88.37 E-value=3.5 Score=39.71 Aligned_cols=50 Identities=10% Similarity=0.044 Sum_probs=40.7
Q ss_pred hhhhhhHHHHHHhcCeeeeee---eeeeec-eeeEEEecCCCccCccCCCCCCCC
Q psy895 3 LLSFLKDKEIEKKGGKRLRKI---TLVIRT-RSIYCYECDSWKDRRCLDPFNYSV 53 (269)
Q Consensus 3 ~~~~~~~~~i~~~gg~~~~~~---~~~~~~-~~i~~~~~~~~~~~~~~~~fi~~~ 53 (269)
-|+..|.+.++.+||++.-+. +|+.++ .++..+++++|+..+|+. +|.+.
T Consensus 233 ~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~-VV~~~ 286 (443)
T PTZ00363 233 GLPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKL-VICDP 286 (443)
T ss_pred HHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCE-EEECc
Confidence 467888999999999988875 555554 568889999999999999 88863
No 29
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=86.74 E-value=23 Score=34.21 Aligned_cols=226 Identities=14% Similarity=0.005 Sum_probs=115.5
Q ss_pred hhhhHHHHHHhcCeeeeee---eeeeeceeeEEEecCCCccCccCCCCCCCCCCCCCCCcccccccccccccCcccchhh
Q psy895 5 SFLKDKEIEKKGGKRLRKI---TLVIRTRSIYCYECDSWKDRRCLDPFNYSVLPIHQPALNPCNGCCVKMVRNSKTEFES 81 (269)
Q Consensus 5 ~~~~~~~i~~~gg~~~~~~---~~~~~~~~i~~~~~~~~~~~~~~~~fi~~~~p~~~~~~~~~~~~~~~Ll~~~~~~~~~ 81 (269)
..+|.+.+.+..|+.++.. .-+..+..=.-|.|.+...+.++. .|-++.|.. ... +++ +...+..+
T Consensus 208 md~la~Afa~ql~~~I~~~~~V~rI~q~~~gV~Vt~~~~~~~~ad~-~i~tiPl~~---l~q-----I~f--~P~l~~~~ 276 (450)
T COG1231 208 MDQLAEAFAKQLGTRILLNEPVRRIDQDGDGVTVTADDVGQYVADY-VLVTIPLAI---LGQ-----IDF--APLLPAEY 276 (450)
T ss_pred HHHHHHHHHHHhhceEEecCceeeEEEcCCeEEEEeCCcceEEecE-EEEecCHHH---Hhh-----ccc--CCCCCHHH
Confidence 3577888888888865552 223333333346677778899999 888866532 111 222 22566778
Q ss_pred hhhhccCCCCCceEEEEe--eccc-C--CCCCcceEeeeCCCCeEEEEcCCCCCCCCCCCCeeEEEEEEecccccCCCCC
Q psy895 82 VRRTCTSKLDISLFMVDH--VCMY-E--GSGRGHMCFCESDRPMIEMVLPSSLDNTLSPPGHHVCLLFTQFTPYKLAGDR 156 (269)
Q Consensus 82 ~~r~~~~~~s~s~f~vyl--~~~~-~--~~~~~~i~~~~~~~p~~~v~~ps~~Dp~~AP~G~~~l~i~~~~~p~~~~~g~ 156 (269)
+++++..++..... .++ +..| + +++....+ .+.+..+++.++. +.. +|+ .+.+-.+ +--+ +..
T Consensus 277 ~~a~~~~~y~~~~K-~~v~f~rpFWee~~~l~G~~~---tD~~~~~i~~~s~-~~~---~G~-gVl~g~~-~~g~--~A~ 344 (450)
T COG1231 277 KQAAKGVPYGSATK-IGVAFSRPFWEEAGILGGESL---TDLGLGFISYPSA-PFA---DGP-GVLLGSY-AFGD--DAL 344 (450)
T ss_pred HHHhcCcCcchhee-eeeecCchhhhhcccCCceEe---ecCCcceEecCcc-ccC---CCc-eEEEeee-eccc--cce
Confidence 78888866654443 333 4443 3 32222222 3455566665544 221 233 3333222 1111 011
Q ss_pred CCcHHHHHHHHHHHHHHHHHHCCCC-CcceEEEEecChhHHHHhhCCCCCccccccccccccccCCCCCCCCCCCCCCCC
Q psy895 157 DWTEEDKANYATNVFSSIEQYCPGF-TQDIVGYEILTPPDLEKEFGLTGGNIFHGALSLNQLLFNRPLPIQGPSSPFTLI 235 (269)
Q Consensus 157 ~w~~~~K~~~a~~il~~le~~~P~i-~~~I~~~~~~TP~t~~~y~~~~~GsiyG~~~~~~q~~~~rp~~~~~~~~~~t~i 235 (269)
.|..---++..+.++..+++.+|+- .+.+.... =.+|.+.-.+.+| +.. ....+...+-| .-..|.
T Consensus 345 ~~~~~~~~~r~~~vl~~l~~~~g~~a~~~f~~~~---~~~W~~dpwt~G~--~aa-~~~g~~~~~~~-------~l~~p~ 411 (450)
T COG1231 345 VIDALPEAERRQKVLARLAKLFGDEAADPFDYGA---SVDWSKDPWTLGG--TAA-YPPGQRTKLYP-------TLPAPH 411 (450)
T ss_pred eEecCCHHHHHHHHHHhHhhhCChhhccccccce---eeecccCCcCCcc--ccc-cCCcccccccc-------cccCCC
Confidence 2331112457788999999999944 34433311 1233333333332 111 11122111111 122356
Q ss_pred CcEEEcC---CCCCCCCCccch--HHHHHHHHHHHHh
Q psy895 236 PHLLLCG---SGAHPGGGVCGA--PGYIAAQMVNRLM 267 (269)
Q Consensus 236 ~nLyl~G---~~~~pG~Gv~gv--sg~~~a~~il~~~ 267 (269)
.-++++| ++-++| =+-|+ ||+.+|.+|...+
T Consensus 412 gRIh~AgtEhas~~~G-w~eGAi~Sg~~AA~ei~~~l 447 (450)
T COG1231 412 GRIHFAGTEHASEFGG-WLEGAIRSGQRAAAEIHALL 447 (450)
T ss_pred CceEEeeecccccccc-hhHHHHHHHHHHHHHHHHhh
Confidence 7899999 333332 24453 9999999998754
No 30
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=86.22 E-value=0.88 Score=44.76 Aligned_cols=28 Identities=4% Similarity=-0.009 Sum_probs=22.9
Q ss_pred eeeeece-eeEEEecCCCccCccCCCCCCC
Q psy895 24 TLVIRTR-SIYCYECDSWKDRRCLDPFNYS 52 (269)
Q Consensus 24 ~~~~~~~-~i~~~~~~~~~~~~~~~~fi~~ 52 (269)
.+++++. +|..|.++.|..++|+. +|-+
T Consensus 125 dli~e~~~~v~GV~t~~G~~~~a~a-VVlT 153 (621)
T COG0445 125 DLIVEEGQRVVGVVTADGPEFHAKA-VVLT 153 (621)
T ss_pred HHhhcCCCeEEEEEeCCCCeeecCE-EEEe
Confidence 5566444 79999999999999999 7766
No 31
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=82.88 E-value=2.9 Score=40.22 Aligned_cols=47 Identities=9% Similarity=-0.024 Sum_probs=38.8
Q ss_pred hhhhHHHHHHhcCeeeeee---eeeeeceeeEEEecCCCccCccCCCCCCC
Q psy895 5 SFLKDKEIEKKGGKRLRKI---TLVIRTRSIYCYECDSWKDRRCLDPFNYS 52 (269)
Q Consensus 5 ~~~~~~~i~~~gg~~~~~~---~~~~~~~~i~~~~~~~~~~~~~~~~fi~~ 52 (269)
-+.+-+.|++.||+++-++ .++.++..+..+..++++++.+++ +|-+
T Consensus 176 vkni~~~l~~~G~ei~f~t~VeDi~~~~~~~~~v~~~~g~~i~~~~-vvlA 225 (486)
T COG2509 176 VKNIREYLESLGGEIRFNTEVEDIEIEDNEVLGVKLTKGEEIEADY-VVLA 225 (486)
T ss_pred HHHHHHHHHhcCcEEEeeeEEEEEEecCCceEEEEccCCcEEecCE-EEEc
Confidence 3556788999999988886 556677779999999999999999 6665
No 32
>KOG0029|consensus
Probab=79.01 E-value=11 Score=37.08 Aligned_cols=99 Identities=12% Similarity=-0.028 Sum_probs=52.2
Q ss_pred CcHHHHHHHHHHHHHHHHHHCCCCCcceEEEEecChhHHHHhhCCCCCccccccccccccccCCCCCCCCCCCCCCCCCc
Q psy895 158 WTEEDKANYATNVFSSIEQYCPGFTQDIVGYEILTPPDLEKEFGLTGGNIFHGALSLNQLLFNRPLPIQGPSSPFTLIPH 237 (269)
Q Consensus 158 w~~~~K~~~a~~il~~le~~~P~i~~~I~~~~~~TP~t~~~y~~~~~GsiyG~~~~~~q~~~~rp~~~~~~~~~~t~i~n 237 (269)
++..-+++..+.++..|++.+++. .+..|+++.--.....+-.+|--..... --|...+. ..+.|+.|
T Consensus 357 ~~~~~~~~~~~~~~~~l~k~f~~~-------~~~~p~~~~vt~w~~d~~~~gsys~~~~---~~~~~~y~--~l~~pi~~ 424 (501)
T KOG0029|consen 357 VETLSDSEIVKKAMKLLRKVFGSE-------EVPDPLDALVTRWGTDPLSGGSYSYVAV---GSDGDDYD--RLAEPIKN 424 (501)
T ss_pred HhcCCHHHHHHHHHHHHHHHhccC-------cCCCccceeeeeecccccCCccccccCC---CCChhHHH--HHhccccC
Confidence 333346778899999999998821 1222222222111222222221110000 00110011 24678999
Q ss_pred -EEEcCCCCCCCC-C-ccch--HHHHHHHHHHHHhc
Q psy895 238 -LLLCGSGAHPGG-G-VCGA--PGYIAAQMVNRLMR 268 (269)
Q Consensus 238 -Lyl~G~~~~pG~-G-v~gv--sg~~~a~~il~~~~ 268 (269)
+||+|--+.-.+ | +.|+ ||..+|..|+..+.
T Consensus 425 ~~ffage~t~~~~~~tm~GA~~sG~~~a~~i~~~~~ 460 (501)
T KOG0029|consen 425 RVFFAGEATSRKYPGTMHGAYLSGLRAASDILDSLI 460 (501)
T ss_pred cEEecchhhcccCCCchHHHHHhhHHHHHHHHHHHH
Confidence 999999886433 3 4454 99999999987653
No 33
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=77.24 E-value=4.1 Score=39.17 Aligned_cols=32 Identities=28% Similarity=0.263 Sum_probs=21.6
Q ss_pred CCCCC-CCcEEEcCCCCCCCCCccc---------hHHHHHHHHHHH
Q psy895 230 SPFTL-IPHLLLCGSGAHPGGGVCG---------APGYIAAQMVNR 265 (269)
Q Consensus 230 ~~~t~-i~nLyl~G~~~~pG~Gv~g---------vsg~~~a~~il~ 265 (269)
..+++ ++||||+||=+ |+.| +.|+++|..+.+
T Consensus 323 ~l~~k~~~~lf~AGQi~----G~~GY~Eaaa~Gl~agina~~~~~~ 364 (433)
T TIGR00137 323 SLHFKDRQTLFFAGQLT----GVEGYVASTAGGWLAGINAARLALG 364 (433)
T ss_pred HhccCCCCCEEECcccc----cchHHHHHHHHHHHHHHHHHHHHcC
Confidence 34555 89999999987 3443 266667666543
No 34
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=74.05 E-value=5.5 Score=40.02 Aligned_cols=52 Identities=10% Similarity=-0.013 Sum_probs=35.9
Q ss_pred hhhhhhHHHHHHhcCe-eeeee--eeeee-ceeeEEEecCCCccCccCCCCCCCCCC
Q psy895 3 LLSFLKDKEIEKKGGK-RLRKI--TLVIR-TRSIYCYECDSWKDRRCLDPFNYSVLP 55 (269)
Q Consensus 3 ~~~~~~~~~i~~~gg~-~~~~~--~~~~~-~~~i~~~~~~~~~~~~~~~~fi~~~~p 55 (269)
++...+.+.+++++|- ++... .++.+ +.++..|.++++..++|+. +|-++-+
T Consensus 97 ~y~~~L~e~Le~~pgV~Ile~~Vv~li~e~~g~V~GV~t~~G~~I~Ad~-VILATGt 152 (617)
T TIGR00136 97 LYRKAMRNALENQPNLSLFQGEVEDLILEDNDEIKGVVTQDGLKFRAKA-VIITTGT 152 (617)
T ss_pred HHHHHHHHHHHcCCCcEEEEeEEEEEEEecCCcEEEEEECCCCEEECCE-EEEccCc
Confidence 3456788889999654 44332 44444 5679999999998888888 6666444
No 35
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=73.38 E-value=3.3 Score=37.15 Aligned_cols=47 Identities=9% Similarity=-0.026 Sum_probs=38.3
Q ss_pred hhhhhHHHHHHhcCeeeeee---eeeeeceeeEEEecCCCccCccCCCCCCC
Q psy895 4 LSFLKDKEIEKKGGKRLRKI---TLVIRTRSIYCYECDSWKDRRCLDPFNYS 52 (269)
Q Consensus 4 ~~~~~~~~i~~~gg~~~~~~---~~~~~~~~i~~~~~~~~~~~~~~~~fi~~ 52 (269)
+...|.+.+++.|++++.+. .+..++.+++.+++++++ .+|+. +|.+
T Consensus 149 l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~gv~~~~g~-i~ad~-vV~a 198 (358)
T PF01266_consen 149 LIQALAAEAQRAGVEIRTGTEVTSIDVDGGRVTGVRTSDGE-IRADR-VVLA 198 (358)
T ss_dssp HHHHHHHHHHHTT-EEEESEEEEEEEEETTEEEEEEETTEE-EEECE-EEE-
T ss_pred hhhhhHHHHHHhhhhccccccccchhhcccccccccccccc-cccce-eEec
Confidence 45678888999999999984 788899999999999998 99988 5544
No 36
>PF03197 FRD2: Bacteriophage FRD2 protein; InterPro: IPR004885 This is group of bacteriophage proteins has no known function.
Probab=70.66 E-value=7.6 Score=29.29 Aligned_cols=40 Identities=18% Similarity=-0.108 Sum_probs=29.8
Q ss_pred hHHHHHHhcCeeeeee-eeeeeceeeEEEecCCCccCccCC
Q psy895 8 KDKEIEKKGGKRLRKI-TLVIRTRSIYCYECDSWKDRRCLD 47 (269)
Q Consensus 8 ~~~~i~~~gg~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~ 47 (269)
+++.|+++||...-+. .......-++.++|++|+.+...-
T Consensus 2 mVklie~~G~~F~V~dm~~~dg~~~V~~ie~~dGti~~~~g 42 (102)
T PF03197_consen 2 MVKLIEENGGWFEVKDMSSIDGDYFVEKIEMADGTIYNSDG 42 (102)
T ss_pred HhHHHHHcCCcEEEeeeEecccceeEEEEEecCCcEEcCCC
Confidence 5789999999955553 434455669999999998876654
No 37
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=69.50 E-value=10 Score=36.07 Aligned_cols=52 Identities=6% Similarity=-0.043 Sum_probs=40.9
Q ss_pred hhhhhhHHHHHHhcCeeeeee---eeeeeceeeEEEecCCCccCccCCCCCCCCCC
Q psy895 3 LLSFLKDKEIEKKGGKRLRKI---TLVIRTRSIYCYECDSWKDRRCLDPFNYSVLP 55 (269)
Q Consensus 3 ~~~~~~~~~i~~~gg~~~~~~---~~~~~~~~i~~~~~~~~~~~~~~~~fi~~~~p 55 (269)
+.+..+.+.|+++.+-.+.+. .++.++.+|..|.|.+++.+.|+. ||-++=+
T Consensus 96 ~y~~~~~~~l~~~~nl~i~~~~V~~l~~e~~~v~GV~~~~g~~~~a~~-vVlaTGt 150 (392)
T PF01134_consen 96 KYSRAMREKLESHPNLTIIQGEVTDLIVENGKVKGVVTKDGEEIEADA-VVLATGT 150 (392)
T ss_dssp HHHHHHHHHHHTSTTEEEEES-EEEEEECTTEEEEEEETTSEEEEECE-EEE-TTT
T ss_pred HHHHHHHHHHhcCCCeEEEEcccceEEecCCeEEEEEeCCCCEEecCE-EEEeccc
Confidence 456677888888777655442 777899999999999999999998 8877665
No 38
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=67.31 E-value=4 Score=36.96 Aligned_cols=30 Identities=37% Similarity=0.466 Sum_probs=24.4
Q ss_pred CcEEEcCCCCCCCCCccch--HHHHHHHHHHHH
Q psy895 236 PHLLLCGSGAHPGGGVCGA--PGYIAAQMVNRL 266 (269)
Q Consensus 236 ~nLyl~G~~~~pG~Gv~gv--sg~~~a~~il~~ 266 (269)
-+||.||||+. |+-|-|+ ||..+|.+|+..
T Consensus 299 ~~l~~cGDwc~-GgrVEgA~LSGlAaA~~i~~~ 330 (331)
T COG3380 299 LPLYACGDWCA-GGRVEGAVLSGLAAADHILNG 330 (331)
T ss_pred Cceeeeccccc-CcchhHHHhccHHHHHHHHhc
Confidence 57999999996 4456664 999999999864
No 39
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=66.89 E-value=18 Score=33.16 Aligned_cols=72 Identities=14% Similarity=0.149 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHCCCCCcceEEEEecChhHHHHhhCCCCCccccccccccccccCCCCCCCCCCCCCCC-CCcEEEcCC
Q psy895 165 NYATNVFSSIEQYCPGFTQDIVGYEILTPPDLEKEFGLTGGNIFHGALSLNQLLFNRPLPIQGPSSPFTL-IPHLLLCGS 243 (269)
Q Consensus 165 ~~a~~il~~le~~~P~i~~~I~~~~~~TP~t~~~y~~~~~GsiyG~~~~~~q~~~~rp~~~~~~~~~~t~-i~nLyl~G~ 243 (269)
+..+.+++.+.+.+|++.+ +..... | ++.... +. .|..+ +.+ ++|||++..
T Consensus 286 ~~~~~l~~~~~~~~P~~~~-~~~~~~--------------g-~~~~t~--D~----~P~ig------~~~~~~gl~~~~G 337 (376)
T PRK11259 286 EDGAELRPFLRNYLPGVGP-CLRGAA--------------C-TYTNTP--DE----HFIID------TLPGHPNVLVASG 337 (376)
T ss_pred HHHHHHHHHHHHHCCCCCc-cccceE--------------E-ecccCC--CC----Cceee------cCCCCCCEEEEec
Confidence 4678888999999998875 322111 1 112112 12 13211 223 799999877
Q ss_pred CCCCCCCccc--hHHHHHHHHHHHH
Q psy895 244 GAHPGGGVCG--APGYIAAQMVNRL 266 (269)
Q Consensus 244 ~~~pG~Gv~g--vsg~~~a~~il~~ 266 (269)
.. |+|+.. +.|+..|+.|++.
T Consensus 338 ~~--g~G~~~ap~~g~~la~li~~~ 360 (376)
T PRK11259 338 CS--GHGFKFASVLGEILADLAQDG 360 (376)
T ss_pred cc--chhhhccHHHHHHHHHHHhcC
Confidence 66 567753 4899999998764
No 40
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=66.79 E-value=12 Score=37.55 Aligned_cols=48 Identities=6% Similarity=-0.003 Sum_probs=35.2
Q ss_pred hhhhhHHHHHHh-cCeeeeee--eeeeeceeeEEEecCCCccCccCCCCCCC
Q psy895 4 LSFLKDKEIEKK-GGKRLRKI--TLVIRTRSIYCYECDSWKDRRCLDPFNYS 52 (269)
Q Consensus 4 ~~~~~~~~i~~~-gg~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~fi~~ 52 (269)
+...+.+.++++ |.+++... .++.++.+|..|.++++..++|+. ||-+
T Consensus 102 y~kaL~e~L~~~~nV~I~q~~V~~Li~e~grV~GV~t~dG~~I~Ak~-VIlA 152 (618)
T PRK05192 102 YRAAMREILENQPNLDLFQGEVEDLIVENGRVVGVVTQDGLEFRAKA-VVLT 152 (618)
T ss_pred HHHHHHHHHHcCCCcEEEEeEEEEEEecCCEEEEEEECCCCEEECCE-EEEe
Confidence 456677788877 45665443 556678889999999999888888 5555
No 41
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=66.62 E-value=5.9 Score=35.15 Aligned_cols=35 Identities=26% Similarity=0.428 Sum_probs=26.9
Q ss_pred CCcEEEcCCCCCCCCCcc-------ch--HHHHHHHHHHHHhcC
Q psy895 235 IPHLLLCGSGAHPGGGVC-------GA--PGYIAAQMVNRLMRK 269 (269)
Q Consensus 235 i~nLyl~G~~~~pG~Gv~-------gv--sg~~~a~~il~~~~~ 269 (269)
.||||.+|=.+.-=+|.+ |+ ||+.+|+.|++++++
T Consensus 213 ~~g~~~~gm~~~~~~~~~rmg~~fg~m~~sg~~~a~~~~~~~~~ 256 (257)
T PRK04176 213 YPGLYVAGMAANAVHGLPRMGPIFGGMLLSGKKVAELILEKLKK 256 (257)
T ss_pred cCCEEEeehhhhhhcCCCccCchhHhHHHhHHHHHHHHHHHhhc
Confidence 899999997665333443 22 999999999999864
No 42
>PF13496 DUF4120: Domain of unknown function (DUF4120)
Probab=64.11 E-value=7.4 Score=28.62 Aligned_cols=66 Identities=18% Similarity=0.286 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHH--CCCCCcceEEEEecChhHH---HHh----hCCCCCccccccccccccccCCCCCCC
Q psy895 161 EDKANYATNVFSSIEQY--CPGFTQDIVGYEILTPPDL---EKE----FGLTGGNIFHGALSLNQLLFNRPLPIQ 226 (269)
Q Consensus 161 ~~K~~~a~~il~~le~~--~P~i~~~I~~~~~~TP~t~---~~y----~~~~~GsiyG~~~~~~q~~~~rp~~~~ 226 (269)
..+.+--+..|++|+++ .|+-.-.|+-++-..|-+| ++| +|..+|-+|+..++-+......|..+|
T Consensus 17 sI~D~tl~~ClerLk~We~n~~~~ceIELY~DfApySFgF~e~ypdG~~givGGllyhg~pd~sfav~~~pfhgw 91 (95)
T PF13496_consen 17 SIGDSTLQKCLERLKQWEKNPNHPCEIELYYDFAPYSFGFAERYPDGRRGIVGGLLYHGCPDRSFAVMLGPFHGW 91 (95)
T ss_pred HhcchHHHHHHHHHHHHHhCCCCCeEEEEEeccCccccceeEEccCCCcceEEeEEecCCCCceeEEEecCcccc
Confidence 45566677889999886 7888999999998888776 334 445566666666554433333443333
No 43
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=62.92 E-value=9.1 Score=36.68 Aligned_cols=44 Identities=14% Similarity=0.019 Sum_probs=34.2
Q ss_pred hhhhhHHHHHHhcCeeeeee---eeeeeceeeEEEecCCC--ccCccCC
Q psy895 4 LSFLKDKEIEKKGGKRLRKI---TLVIRTRSIYCYECDSW--KDRRCLD 47 (269)
Q Consensus 4 ~~~~~~~~i~~~gg~~~~~~---~~~~~~~~i~~~~~~~~--~~~~~~~ 47 (269)
|.+.|.+.++++||+++.+. .+..++.++..+.++++ ..++++.
T Consensus 265 L~~aL~~~~~~~Gg~il~g~~V~~i~~~~~~v~~V~t~~g~~~~l~AD~ 313 (419)
T TIGR03378 265 LEEALKHRFEQLGGVMLPGDRVLRAEFEGNRVTRIHTRNHRDIPLRADH 313 (419)
T ss_pred HHHHHHHHHHHCCCEEEECcEEEEEEeeCCeEEEEEecCCccceEECCE
Confidence 56778999999999999773 65668888999887665 3566666
No 44
>KOG2311|consensus
Probab=60.58 E-value=9.3 Score=37.36 Aligned_cols=21 Identities=0% Similarity=-0.350 Sum_probs=16.0
Q ss_pred eeEEEecCCCccCccCCCCCCC
Q psy895 31 SIYCYECDSWKDRRCLDPFNYS 52 (269)
Q Consensus 31 ~i~~~~~~~~~~~~~~~~fi~~ 52 (269)
.|..|...+|+...+.. +|-+
T Consensus 161 ~~~gV~l~dgt~v~a~~-VilT 181 (679)
T KOG2311|consen 161 VVSGVVLVDGTVVYAES-VILT 181 (679)
T ss_pred EEEEEEEecCcEeccce-EEEe
Confidence 38888888888888887 6554
No 45
>KOG2820|consensus
Probab=57.14 E-value=1.7e+02 Score=27.52 Aligned_cols=50 Identities=6% Similarity=-0.144 Sum_probs=38.9
Q ss_pred hhhHHHHHHhcCeeeeee-----eeeeeceeeEEEecCCCccCccCCCCCCCCCCC
Q psy895 6 FLKDKEIEKKGGKRLRKI-----TLVIRTRSIYCYECDSWKDRRCLDPFNYSVLPI 56 (269)
Q Consensus 6 ~~~~~~i~~~gg~~~~~~-----~~~~~~~~i~~~~~~~~~~~~~~~~fi~~~~p~ 56 (269)
++|...++++||.++.+. .++-++.....|.|.++..|.++- .|-++-++
T Consensus 157 k~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akk-iI~t~GaW 211 (399)
T KOG2820|consen 157 KALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKK-IIFTVGAW 211 (399)
T ss_pred HHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecce-EEEEecHH
Confidence 577889999999988774 333446668889999999999999 77775553
No 46
>PLN02852 ferredoxin-NADP+ reductase
Probab=56.95 E-value=11 Score=36.84 Aligned_cols=36 Identities=14% Similarity=0.089 Sum_probs=29.1
Q ss_pred CCCCCcEEEcCCCCCCCCCccc---hHHHHHHHHHHHHh
Q psy895 232 FTLIPHLLLCGSGAHPGGGVCG---APGYIAAQMVNRLM 267 (269)
Q Consensus 232 ~t~i~nLyl~G~~~~pG~Gv~g---vsg~~~a~~il~~~ 267 (269)
.|.++|+|.+|+..+-..|+.+ ..|..||+.|++|+
T Consensus 383 ~T~ipGvyAaGDi~~Gp~gvI~t~~~dA~~ta~~i~~d~ 421 (491)
T PLN02852 383 ADTEPGLYVVGWLKRGPTGIIGTNLTCAEETVASIAEDL 421 (491)
T ss_pred ccCCCCEEEeeeEecCCCCeeeecHhhHHHHHHHHHHHH
Confidence 4789999999999972236665 28999999999886
No 47
>PF08491 SE: Squalene epoxidase; InterPro: IPR013698 This domain is found in squalene epoxidase (SE) and related proteins which are found in taxonomically diverse groups of eukaryotes and also in bacteria. SE was first cloned from Saccharomyces cerevisiae (Baker's yeast) where it was named ERG1. It contains a putative FAD binding site and is a key enzyme in the sterol biosynthetic pathway []. Putative transmembrane regions are found to the protein's C terminus. ; GO: 0004506 squalene monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=56.40 E-value=91 Score=28.21 Aligned_cols=19 Identities=21% Similarity=0.275 Sum_probs=14.4
Q ss_pred CCCcEEEcCCCCCCCCCcc
Q psy895 234 LIPHLLLCGSGAHPGGGVC 252 (269)
Q Consensus 234 ~i~nLyl~G~~~~pG~Gv~ 252 (269)
..+|+.+.||..+.-+=+.
T Consensus 128 ~~~G~vllGDA~nmrHPLT 146 (276)
T PF08491_consen 128 WKPGVVLLGDAANMRHPLT 146 (276)
T ss_pred CCCCEEEEehhhcCcCCcc
Confidence 3599999999998544444
No 48
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=55.33 E-value=8.8 Score=33.82 Aligned_cols=34 Identities=24% Similarity=0.362 Sum_probs=26.3
Q ss_pred CCcEEEcCCCCCCCCCcc-------ch--HHHHHHHHHHHHhc
Q psy895 235 IPHLLLCGSGAHPGGGVC-------GA--PGYIAAQMVNRLMR 268 (269)
Q Consensus 235 i~nLyl~G~~~~pG~Gv~-------gv--sg~~~a~~il~~~~ 268 (269)
.||||.+|=.+.-=+|.+ |+ ||+.+|+.|++++.
T Consensus 218 ~pgL~vaGMa~~av~G~pRMGPiFGgMllSGkkaAe~i~e~L~ 260 (262)
T COG1635 218 YPGLYVAGMAVNAVHGLPRMGPIFGGMLLSGKKAAEEILEKLK 260 (262)
T ss_pred cCCeEeehhhHHhhcCCcccCchhhhhhhchHHHHHHHHHHhh
Confidence 799999997765334544 23 99999999999874
No 49
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=52.05 E-value=16 Score=36.29 Aligned_cols=34 Identities=6% Similarity=-0.064 Sum_probs=25.6
Q ss_pred hhhhhHHHHHHhcCeeeeee---eeeeeceeeEEEec
Q psy895 4 LSFLKDKEIEKKGGKRLRKI---TLVIRTRSIYCYEC 37 (269)
Q Consensus 4 ~~~~~~~~i~~~gg~~~~~~---~~~~~~~~i~~~~~ 37 (269)
+...|.+.+++.|.+++.+. +++.++.++..+.+
T Consensus 121 i~~~L~~~~~~~gi~i~~~~~~~~Li~~~g~v~Ga~~ 157 (565)
T TIGR01816 121 ILHTLYQQNLKADTSFFNEYFALDLLMEDGECRGVIA 157 (565)
T ss_pred HHHHHHHHHHhCCCEEEeccEEEEEEeeCCEEEEEEE
Confidence 34567788888999999884 66666677877766
No 50
>PRK06175 L-aspartate oxidase; Provisional
Probab=51.96 E-value=17 Score=34.66 Aligned_cols=36 Identities=17% Similarity=0.115 Sum_probs=22.7
Q ss_pred CCCCCCCcEEEcCCCCC---CCCCcc-c-------hHHHHHHHHHHH
Q psy895 230 SPFTLIPHLLLCGSGAH---PGGGVC-G-------APGYIAAQMVNR 265 (269)
Q Consensus 230 ~~~t~i~nLyl~G~~~~---pG~Gv~-g-------vsg~~~a~~il~ 265 (269)
..+|+|||||-+|-.+. .|..-. | +.|+.|++.+..
T Consensus 339 ~~~t~i~gLYAaGE~a~~g~hG~nrl~gnsl~~~lvfGr~Ag~~a~~ 385 (433)
T PRK06175 339 NSKTSMKNLYAFGEVSCTGVHGANRLASNSLLEGLVFSKRGAEKINS 385 (433)
T ss_pred CccccCCCeEecccccccCCCccccchhHHHHHHHHHHHHHHHHHHH
Confidence 34689999999999752 121111 1 377777777643
No 51
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=51.58 E-value=15 Score=32.45 Aligned_cols=34 Identities=21% Similarity=0.387 Sum_probs=25.9
Q ss_pred CCcEEEcCCCCCCCCCcc------c---hHHHHHHHHHHHHhc
Q psy895 235 IPHLLLCGSGAHPGGGVC------G---APGYIAAQMVNRLMR 268 (269)
Q Consensus 235 i~nLyl~G~~~~pG~Gv~------g---vsg~~~a~~il~~~~ 268 (269)
.||||.+|=.+.-=+|.+ | +||+.+|+.|+++++
T Consensus 212 ~~g~~~~gm~~~~~~~~~rmgp~fg~m~~sg~~~a~~~~~~~~ 254 (254)
T TIGR00292 212 VPNLYVAGMAVAAVHGLPRMGPIFGGMLLSGKHVAEQILEKLK 254 (254)
T ss_pred cCCEEEechhhhhhcCCCCcCchHHHHHHhhHHHHHHHHHHhC
Confidence 899999997765323443 2 299999999999874
No 52
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=50.20 E-value=2.1e+02 Score=26.48 Aligned_cols=44 Identities=2% Similarity=-0.306 Sum_probs=32.0
Q ss_pred hhhhhhHHHHHHhcC-eeeeee---eeeeeceeeEEEecC-CCccCccCC
Q psy895 3 LLSFLKDKEIEKKGG-KRLRKI---TLVIRTRSIYCYECD-SWKDRRCLD 47 (269)
Q Consensus 3 ~~~~~~~~~i~~~gg-~~~~~~---~~~~~~~~i~~~~~~-~~~~~~~~~ 47 (269)
.|...|.+.+++.++ +++... .++.++..++ +..+ +|+..+|+.
T Consensus 105 ~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~-v~l~~dG~~~~a~l 153 (387)
T COG0654 105 DLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVT-VTLSFDGETLDADL 153 (387)
T ss_pred HHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceE-EEEcCCCcEEecCE
Confidence 356778899999985 777765 5555555566 7777 888888887
No 53
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=48.89 E-value=19 Score=34.83 Aligned_cols=36 Identities=31% Similarity=0.373 Sum_probs=23.1
Q ss_pred CCCCCCCcEEEcCCCCCCC-CCc--c-c-------hHHHHHHHHHHH
Q psy895 230 SPFTLIPHLLLCGSGAHPG-GGV--C-G-------APGYIAAQMVNR 265 (269)
Q Consensus 230 ~~~t~i~nLyl~G~~~~pG-~Gv--~-g-------vsg~~~a~~il~ 265 (269)
..+|+|||||-+|..+..| +|- . | +.|+.|++.+.+
T Consensus 341 ~~~t~I~GLyAaGE~a~~g~hGanrl~g~sl~~~~v~G~~Ag~~aa~ 387 (488)
T TIGR00551 341 HGRTTVPGLYAIGEVACTGLHGANRLASNSLLECLVFGWSAAEDISR 387 (488)
T ss_pred CCcccCCCEEECccccccccCcccccchhHHHHHHHHHHHHHHHHHh
Confidence 3568899999999975211 121 1 1 368888777654
No 54
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=47.93 E-value=21 Score=35.63 Aligned_cols=33 Identities=6% Similarity=-0.069 Sum_probs=23.1
Q ss_pred hhhhHHHHHHhcCeeeeee---eeeeec-eeeEEEec
Q psy895 5 SFLKDKEIEKKGGKRLRKI---TLVIRT-RSIYCYEC 37 (269)
Q Consensus 5 ~~~~~~~i~~~gg~~~~~~---~~~~~~-~~i~~~~~ 37 (269)
...|.+.+++.|.+++.+. .++.++ .++..+.+
T Consensus 152 ~~~L~~~~~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~ 188 (598)
T PRK09078 152 LHTLYQQSLKHNAEFFIEYFALDLIMDDGGVCRGVVA 188 (598)
T ss_pred HHHHHHHHhhcCCEEEEeEEEEEEEEcCCCEEEEEEE
Confidence 3467777888899988884 656554 56777665
No 55
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=46.94 E-value=18 Score=35.93 Aligned_cols=34 Identities=15% Similarity=-0.028 Sum_probs=24.8
Q ss_pred hhhhhHHHHHHhcCeeeeee---eeeeeceeeEEEec
Q psy895 4 LSFLKDKEIEKKGGKRLRKI---TLVIRTRSIYCYEC 37 (269)
Q Consensus 4 ~~~~~~~~i~~~gg~~~~~~---~~~~~~~~i~~~~~ 37 (269)
|...|.+.++++|++++.+. .++.++.+|..+..
T Consensus 219 l~~~L~~~a~~~Gv~i~~~t~v~~l~~~~g~v~GV~~ 255 (581)
T PRK06134 219 LVARLLKSAEDLGVRIWESAPARELLREDGRVAGAVV 255 (581)
T ss_pred HHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEE
Confidence 34578889999999998885 55555667766655
No 56
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=46.93 E-value=21 Score=35.40 Aligned_cols=35 Identities=11% Similarity=-0.076 Sum_probs=25.5
Q ss_pred hhhhHHHHHHhcCeeeeee---eeeeeceeeEEEecCC
Q psy895 5 SFLKDKEIEKKGGKRLRKI---TLVIRTRSIYCYECDS 39 (269)
Q Consensus 5 ~~~~~~~i~~~gg~~~~~~---~~~~~~~~i~~~~~~~ 39 (269)
...|.+.+++.|++++.+. +++.++.+|..+.+.+
T Consensus 217 ~~~L~~~~~~~Gv~i~~~~~v~~l~~~~g~V~GV~~~~ 254 (574)
T PRK12842 217 AARLAKSALDLGIPILTGTPARELLTEGGRVVGARVID 254 (574)
T ss_pred HHHHHHHHHhCCCEEEeCCEEEEEEeeCCEEEEEEEEc
Confidence 3447788899999998884 6666667777776643
No 57
>PRK09077 L-aspartate oxidase; Provisional
Probab=46.11 E-value=21 Score=35.07 Aligned_cols=36 Identities=22% Similarity=0.105 Sum_probs=22.9
Q ss_pred CCCCCCCcEEEcCCCCCCC-CCcc--------c--hHHHHHHHHHHH
Q psy895 230 SPFTLIPHLLLCGSGAHPG-GGVC--------G--APGYIAAQMVNR 265 (269)
Q Consensus 230 ~~~t~i~nLyl~G~~~~pG-~Gv~--------g--vsg~~~a~~il~ 265 (269)
..+|+|||||-+|..+..| +|-. . +.|+.|++.+.+
T Consensus 361 ~~~t~I~GLyAaGE~a~~g~hGanrl~gnsl~~~~vfG~~Ag~~aa~ 407 (536)
T PRK09077 361 HGRTDLDGLYAIGEVSYTGLHGANRMASNSLLECLVYGRSAAEDILS 407 (536)
T ss_pred CCccccCCEEecccccccccCCCccchhhhHHHHHHHHHHHHHHHHH
Confidence 4568899999999976211 2211 1 267777777654
No 58
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=45.82 E-value=71 Score=29.19 Aligned_cols=46 Identities=4% Similarity=-0.125 Sum_probs=29.6
Q ss_pred hhhhhHHHHHHhcCeeeeee---eeeeeceeeEEEecCCCccCccCCCCCCC
Q psy895 4 LSFLKDKEIEKKGGKRLRKI---TLVIRTRSIYCYECDSWKDRRCLDPFNYS 52 (269)
Q Consensus 4 ~~~~~~~~i~~~gg~~~~~~---~~~~~~~~i~~~~~~~~~~~~~~~~fi~~ 52 (269)
+...|.+.++++|++++.+. .++.++..+. ++++++ .+.|+. +|..
T Consensus 147 ~~~~l~~~~~~~g~~~~~~~~V~~i~~~~~~~~-v~~~~~-~i~a~~-vV~a 195 (380)
T TIGR01377 147 ALRALQELAEAHGATVRDGTKVVEIEPTELLVT-VKTTKG-SYQANK-LVVT 195 (380)
T ss_pred HHHHHHHHHHHcCCEEECCCeEEEEEecCCeEE-EEeCCC-EEEeCE-EEEe
Confidence 45667788889999998874 4444444443 666655 467776 4444
No 59
>PRK07395 L-aspartate oxidase; Provisional
Probab=45.78 E-value=16 Score=36.13 Aligned_cols=16 Identities=38% Similarity=0.395 Sum_probs=13.7
Q ss_pred CCCCCCCcEEEcCCCC
Q psy895 230 SPFTLIPHLLLCGSGA 245 (269)
Q Consensus 230 ~~~t~i~nLyl~G~~~ 245 (269)
..+|+|||||-+|-.+
T Consensus 355 ~~~t~I~GLyAaGE~a 370 (553)
T PRK07395 355 NNQTSIPGLYAVGETA 370 (553)
T ss_pred CCcccCCCEEECcccc
Confidence 4578899999999976
No 60
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=45.42 E-value=21 Score=31.33 Aligned_cols=36 Identities=31% Similarity=0.335 Sum_probs=25.6
Q ss_pred CCCCCCcEEEcCCCCCCCC--Cccch-HHHHHHHHHHHH
Q psy895 231 PFTLIPHLLLCGSGAHPGG--GVCGA-PGYIAAQMVNRL 266 (269)
Q Consensus 231 ~~t~i~nLyl~G~~~~pG~--Gv~gv-sg~~~a~~il~~ 266 (269)
.+|..+|+|.+||.+..+. ....+ .|..||..|...
T Consensus 261 ~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~ 299 (300)
T TIGR01292 261 MRTSVPGVFAAGDVRDKGYRQAVTAAGDGCIAALSAERY 299 (300)
T ss_pred CccCCCCEEEeecccCcchhhhhhhhhhHHHHHHHHHhh
Confidence 4567999999999996222 22233 899999888653
No 61
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=45.18 E-value=23 Score=35.69 Aligned_cols=38 Identities=21% Similarity=0.215 Sum_probs=29.4
Q ss_pred CCCCCCcEEEcCCCCCCCCCc-c-ch-HHHHHHHHHHHHhcC
Q psy895 231 PFTLIPHLLLCGSGAHPGGGV-C-GA-PGYIAAQMVNRLMRK 269 (269)
Q Consensus 231 ~~t~i~nLyl~G~~~~pG~Gv-~-gv-sg~~~a~~il~~~~~ 269 (269)
.+|.++|+|.+||.+. |..+ . .+ .|+.||..|...|++
T Consensus 613 ~~Ts~~gVfAaGD~~~-g~~~vv~Ai~~Gr~AA~~I~~~L~~ 653 (654)
T PRK12769 613 YQTSNPKIFAGGDAVR-GADLVVTAMAEGRHAAQGIIDWLGV 653 (654)
T ss_pred cccCCCCEEEcCCcCC-CCcHHHHHHHHHHHHHHHHHHHhCc
Confidence 4688999999999985 3433 2 23 899999999988753
No 62
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=45.14 E-value=22 Score=35.10 Aligned_cols=47 Identities=9% Similarity=-0.081 Sum_probs=29.8
Q ss_pred hhhhHHHHHHhcCeeeeee---eeeeeceeeEEEec---CCCc--cCccCCCCCCC
Q psy895 5 SFLKDKEIEKKGGKRLRKI---TLVIRTRSIYCYEC---DSWK--DRRCLDPFNYS 52 (269)
Q Consensus 5 ~~~~~~~i~~~gg~~~~~~---~~~~~~~~i~~~~~---~~~~--~~~~~~~fi~~ 52 (269)
...|.+.+++.|.+++.+. .++.++.++..+.+ .+++ .++|+. +|-+
T Consensus 132 ~~~L~~~~~~~gv~i~~~~~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~Ak~-VVlA 186 (566)
T TIGR01812 132 LHTLYEQCLKLGVSFFNEYFALDLIHDDGRVRGVVAYDLKTGEIVFFRAKA-VVLA 186 (566)
T ss_pred HHHHHHHHHHcCCEEEeccEEEEEEEeCCEEEEEEEEECCCCcEEEEECCe-EEEC
Confidence 4567778888899998884 66666677766654 3343 345555 4433
No 63
>PRK10262 thioredoxin reductase; Provisional
Probab=44.66 E-value=24 Score=31.86 Aligned_cols=38 Identities=24% Similarity=0.204 Sum_probs=27.8
Q ss_pred CCCCCCcEEEcCCCCCCCC-Ccc-ch-HHHHHHHHHHHHhc
Q psy895 231 PFTLIPHLLLCGSGAHPGG-GVC-GA-PGYIAAQMVNRLMR 268 (269)
Q Consensus 231 ~~t~i~nLyl~G~~~~pG~-Gv~-gv-sg~~~a~~il~~~~ 268 (269)
.+|.+||+|.+||.+..+. -+. .+ .|..||..|.+.+.
T Consensus 275 ~~t~~~~VyA~GD~~~~~~~~~~~A~~~g~~Aa~~~~~~l~ 315 (321)
T PRK10262 275 TQTSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAERYLD 315 (321)
T ss_pred cccCCCCEEECeeccCCCcceEEEEehhHHHHHHHHHHHHH
Confidence 4788999999999996432 223 23 78899888877654
No 64
>PF08331 DUF1730: Domain of unknown function (DUF1730); InterPro: IPR013542 This domain of unknown function occurs in iron-sulphur cluster-binding proteins together with the 4Fe-4S binding domain (IPR001450 from INTERPRO).
Probab=44.42 E-value=63 Score=23.03 Aligned_cols=29 Identities=17% Similarity=0.235 Sum_probs=22.3
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHCCCCCcc
Q psy895 155 DRDWTEEDKANYATNVFSSIEQYCPGFTQD 184 (269)
Q Consensus 155 g~~w~~~~K~~~a~~il~~le~~~P~i~~~ 184 (269)
|.||- ..-++..++|.+.|++.+|+++-+
T Consensus 45 G~DYH-~vlk~~L~~l~~~i~~~~~~~~~r 73 (78)
T PF08331_consen 45 GRDYH-KVLKKKLEQLAEWIRELGPDFEYR 73 (78)
T ss_pred cCChH-HHHHHHHHHHHHHHHHHCCCCCeE
Confidence 56786 455667789999999999997633
No 65
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=43.45 E-value=63 Score=30.05 Aligned_cols=49 Identities=10% Similarity=-0.080 Sum_probs=33.1
Q ss_pred hhhhhHHHHHHhcCeeeeee---eeeeeceeeEEEecCCCccCccCCCCCCCCC
Q psy895 4 LSFLKDKEIEKKGGKRLRKI---TLVIRTRSIYCYECDSWKDRRCLDPFNYSVL 54 (269)
Q Consensus 4 ~~~~~~~~i~~~gg~~~~~~---~~~~~~~~i~~~~~~~~~~~~~~~~fi~~~~ 54 (269)
+...|.+.+++.|++++.+. .++..+..+..++++++ .++|+. +|..+-
T Consensus 203 ~~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~t~~~-~~~a~~-VV~a~G 254 (416)
T PRK00711 203 FTQRLAAMAEQLGVKFRFNTPVDGLLVEGGRITGVQTGGG-VITADA-YVVALG 254 (416)
T ss_pred HHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEEeCCc-EEeCCE-EEECCC
Confidence 44567888899999998763 55555666767777755 466777 444433
No 66
>PLN02815 L-aspartate oxidase
Probab=42.95 E-value=27 Score=34.98 Aligned_cols=34 Identities=24% Similarity=0.076 Sum_probs=22.8
Q ss_pred CCCCCCCcEEEcCCCCCCCCCccc-------------hHHHHHHHHHHH
Q psy895 230 SPFTLIPHLLLCGSGAHPGGGVCG-------------APGYIAAQMVNR 265 (269)
Q Consensus 230 ~~~t~i~nLyl~G~~~~pG~Gv~g-------------vsg~~~a~~il~ 265 (269)
..+|+|||||-+|..+. .|+.| +.|+.|++.+.+
T Consensus 385 ~~~t~IpGLyAaGE~a~--~G~hGanrl~gnsl~e~lvfGr~Ag~~aa~ 431 (594)
T PLN02815 385 QGETNVQGLYAAGEVAC--TGLHGANRLASNSLLEALVFARRAVQPSID 431 (594)
T ss_pred CCceecCCEEecccccc--cCCCCCCcchhhHHHHHHHHHHHHHHHHHH
Confidence 45688999999999762 12221 267777777653
No 67
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=42.93 E-value=27 Score=34.68 Aligned_cols=33 Identities=15% Similarity=-0.006 Sum_probs=23.8
Q ss_pred hhhhHHHHHHhcCeeeeee---eeeee-ceeeEEEec
Q psy895 5 SFLKDKEIEKKGGKRLRKI---TLVIR-TRSIYCYEC 37 (269)
Q Consensus 5 ~~~~~~~i~~~gg~~~~~~---~~~~~-~~~i~~~~~ 37 (269)
...|.+.+++.|.+++.+. +++.+ +.++..+.+
T Consensus 129 ~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~ 165 (570)
T PRK05675 129 LHTLYQGNLKNGTTFLNEWYAVDLVKNQDGAVVGVIA 165 (570)
T ss_pred HHHHHHHHhccCCEEEECcEEEEEEEcCCCeEEEEEE
Confidence 3556777778899999884 66663 567777766
No 68
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=42.69 E-value=29 Score=35.10 Aligned_cols=33 Identities=6% Similarity=-0.072 Sum_probs=22.4
Q ss_pred hhhhHHHHHHhcCeeeeee---eeeee-ceeeEEEec
Q psy895 5 SFLKDKEIEKKGGKRLRKI---TLVIR-TRSIYCYEC 37 (269)
Q Consensus 5 ~~~~~~~i~~~gg~~~~~~---~~~~~-~~~i~~~~~ 37 (269)
...|.+.+++.|.+++.+. .++.+ +.++..+.+
T Consensus 190 ~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~ 226 (635)
T PLN00128 190 LHTLYGQAMKHNTQFFVEYFALDLIMDSDGACQGVIA 226 (635)
T ss_pred HHHHHHHHHhCCCEEEEeeEEEEEEEcCCCEEEEEEE
Confidence 3566777778888988874 55554 456776665
No 69
>PLN02661 Putative thiazole synthesis
Probab=42.30 E-value=24 Score=33.08 Aligned_cols=34 Identities=18% Similarity=0.292 Sum_probs=26.1
Q ss_pred CCcEEEcCCCCCCCCCcc-------c--hHHHHHHHHHHHHhc
Q psy895 235 IPHLLLCGSGAHPGGGVC-------G--APGYIAAQMVNRLMR 268 (269)
Q Consensus 235 i~nLyl~G~~~~pG~Gv~-------g--vsg~~~a~~il~~~~ 268 (269)
+||||.+|=.+.-=.|.+ | +||+.+|+.|+++++
T Consensus 286 ~pgl~~~gm~~~~~~g~~rmgp~fg~m~~sg~k~a~~~~~~l~ 328 (357)
T PLN02661 286 VPGMIVTGMEVAEIDGSPRMGPTFGAMMISGQKAAHLALKALG 328 (357)
T ss_pred cCCEEEeccchhhhcCCCccCchhHhHHhhhHHHHHHHHHHHc
Confidence 899999997765323443 2 399999999999875
No 70
>PRK12839 hypothetical protein; Provisional
Probab=42.05 E-value=26 Score=34.85 Aligned_cols=33 Identities=6% Similarity=-0.099 Sum_probs=23.4
Q ss_pred hhhHHHHHHhcCeeeeee---eeeee-ceeeEEEecC
Q psy895 6 FLKDKEIEKKGGKRLRKI---TLVIR-TRSIYCYECD 38 (269)
Q Consensus 6 ~~~~~~i~~~gg~~~~~~---~~~~~-~~~i~~~~~~ 38 (269)
..|.+..++.|.+++.+. +++.+ +.+|..|.+.
T Consensus 218 ~~L~~~a~~~Gv~i~~~t~v~~Li~~~~g~V~GV~~~ 254 (572)
T PRK12839 218 GRLLRSADDLGVDLRVSTSATSLTTDKNGRVTGVRVQ 254 (572)
T ss_pred HHHHHHHHHCCCEEEcCCEEEEEEECCCCcEEEEEEE
Confidence 457778899999998885 55543 4677777653
No 71
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=41.84 E-value=27 Score=33.40 Aligned_cols=36 Identities=25% Similarity=0.210 Sum_probs=26.7
Q ss_pred CCCCCcEEEcCCCCC--------CCCCccchHHHHHHHHHHHHh
Q psy895 232 FTLIPHLLLCGSGAH--------PGGGVCGAPGYIAAQMVNRLM 267 (269)
Q Consensus 232 ~t~i~nLyl~G~~~~--------pG~Gv~gvsg~~~a~~il~~~ 267 (269)
++.++|||.+|+-+- .|.||..+||+.|++.|++..
T Consensus 377 ~~~~~nl~a~G~vl~g~d~~~~~~g~Gva~~ta~~a~~~~~~~~ 420 (422)
T PRK05329 377 GPVIENLYAAGAVLGGYDPIREGCGSGVALATALHAAEQIAEEA 420 (422)
T ss_pred CeeccceEEeeehhcCCchHHhCCCchhHHHHHHHHHHHHHHhh
Confidence 455899999998662 233555459999999998764
No 72
>PRK08071 L-aspartate oxidase; Provisional
Probab=41.09 E-value=29 Score=33.88 Aligned_cols=16 Identities=38% Similarity=0.277 Sum_probs=13.4
Q ss_pred CCCCCCCcEEEcCCCC
Q psy895 230 SPFTLIPHLLLCGSGA 245 (269)
Q Consensus 230 ~~~t~i~nLyl~G~~~ 245 (269)
..+|+|||||-+|..+
T Consensus 340 ~~~t~I~GLyAaGE~a 355 (510)
T PRK08071 340 DGETSIPGLYAIGEVA 355 (510)
T ss_pred CCcccCCCeEEccccc
Confidence 3468899999999976
No 73
>cd00080 HhH2_motif Helix-hairpin-helix class 2 (Pol1 family) motif. HhH2 domains are found in Rad2 family of prokaryotic and eukaryotic replication and repair nucleases, i.e., DNA polymerase I, Taq DNA polymerase, DNA repair protein Rad2 endonuclease, flap endonuclease, exonuclease I and IX, 5'-3' exonuclease and also bacteriophage Rnase H. These nucleases degrade RNA-DNA or DNA-DNA duplexes, or both and play essential roles in DNA duplication, repair, and recombination.
Probab=41.03 E-value=25 Score=25.03 Aligned_cols=29 Identities=24% Similarity=0.219 Sum_probs=18.8
Q ss_pred EEcCCCCCCCCCccchHHHHHHHHHHHHhc
Q psy895 239 LLCGSGAHPGGGVCGAPGYIAAQMVNRLMR 268 (269)
Q Consensus 239 yl~G~~~~pG~Gv~gvsg~~~a~~il~~~~ 268 (269)
-|+||.+---.||+|+ |..+|.+++.+++
T Consensus 15 ~L~GD~~D~i~gv~gi-G~k~A~~ll~~~~ 43 (75)
T cd00080 15 ILVGDKSDNIPGVPGI-GPKTALKLLKEYG 43 (75)
T ss_pred HHcCCccccCCCCCcc-cHHHHHHHHHHhC
Confidence 3677555422489987 6777777776654
No 74
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=40.96 E-value=42 Score=23.54 Aligned_cols=36 Identities=6% Similarity=0.026 Sum_probs=27.9
Q ss_pred hhhhhHHHHHHhcCeeeeee---eeeeeceeeEEEecCCC
Q psy895 4 LSFLKDKEIEKKGGKRLRKI---TLVIRTRSIYCYECDSW 40 (269)
Q Consensus 4 ~~~~~~~~i~~~gg~~~~~~---~~~~~~~~i~~~~~~~~ 40 (269)
++..+.+.+++.|-+++.+. +++.++..++ +.++||
T Consensus 42 ~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~~~-V~~~~g 80 (80)
T PF00070_consen 42 AAKILEEYLRKRGVEVHTNTKVKEIEKDGDGVE-VTLEDG 80 (80)
T ss_dssp HHHHHHHHHHHTTEEEEESEEEEEEEEETTSEE-EEEETS
T ss_pred HHHHHHHHHHHCCCEEEeCCEEEEEEEeCCEEE-EEEecC
Confidence 45678889999999999885 6666666666 888775
No 75
>smart00279 HhH2 Helix-hairpin-helix class 2 (Pol1 family) motifs.
Probab=40.40 E-value=26 Score=21.31 Aligned_cols=26 Identities=31% Similarity=0.216 Sum_probs=16.3
Q ss_pred EcCCCCCCCCCccchHHHHHHHHHHHH
Q psy895 240 LCGSGAHPGGGVCGAPGYIAAQMVNRL 266 (269)
Q Consensus 240 l~G~~~~pG~Gv~gvsg~~~a~~il~~ 266 (269)
|+||.+.-=.||+|+ |..+|.+++++
T Consensus 10 L~GD~~dni~Gv~gi-G~ktA~~ll~~ 35 (36)
T smart00279 10 LVGDYSDNIPGVKGI-GPKTALKLLRE 35 (36)
T ss_pred HhCcCCCCCCCCCcc-cHHHHHHHHHh
Confidence 567666411378877 66777777664
No 76
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=40.04 E-value=1.2e+02 Score=28.18 Aligned_cols=43 Identities=7% Similarity=0.060 Sum_probs=30.5
Q ss_pred hhhhhHHHHHHhcCeeeeee---eeeee-ceeeEEEecCCCccCccCC
Q psy895 4 LSFLKDKEIEKKGGKRLRKI---TLVIR-TRSIYCYECDSWKDRRCLD 47 (269)
Q Consensus 4 ~~~~~~~~i~~~gg~~~~~~---~~~~~-~~~i~~~~~~~~~~~~~~~ 47 (269)
+...|.+..++.|++++.+. .++.. +..+..++++++ ..+|+.
T Consensus 185 l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~ 231 (407)
T TIGR01373 185 VAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKK 231 (407)
T ss_pred HHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCE
Confidence 44567888899999999874 54433 456777888877 367776
No 77
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=39.46 E-value=32 Score=34.56 Aligned_cols=33 Identities=6% Similarity=-0.143 Sum_probs=23.1
Q ss_pred hhhhHHHHHHhcCeeeeee---eeee-eceeeEEEec
Q psy895 5 SFLKDKEIEKKGGKRLRKI---TLVI-RTRSIYCYEC 37 (269)
Q Consensus 5 ~~~~~~~i~~~gg~~~~~~---~~~~-~~~~i~~~~~ 37 (269)
-..|.+.+++.|.+++.+. .++. ++.++..+.+
T Consensus 169 ~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~ 205 (617)
T PTZ00139 169 LHTLYGQSLKYDCNFFIEYFALDLIMDEDGECRGVIA 205 (617)
T ss_pred HHHHHHHHHhCCCEEEeceEEEEEEECCCCEEEEEEE
Confidence 3466777788899998884 5555 4566776655
No 78
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=38.61 E-value=31 Score=33.05 Aligned_cols=30 Identities=27% Similarity=0.275 Sum_probs=22.5
Q ss_pred CCcEEEcCCCCC--------CCCCccchHHHHHHHHHH
Q psy895 235 IPHLLLCGSGAH--------PGGGVCGAPGYIAAQMVN 264 (269)
Q Consensus 235 i~nLyl~G~~~~--------pG~Gv~gvsg~~~a~~il 264 (269)
++|||.+|.-.- -|.||..++|+.||+.|+
T Consensus 382 ~~Nl~a~G~vL~G~d~~~~gcG~GVai~Ta~~aa~~i~ 419 (419)
T TIGR03378 382 IENLYAIGAVLGGYDPIFEGCGSGVAVSTALHAAEQII 419 (419)
T ss_pred cccceEechhhcCCChHhcCCCchhHHHHHHHHHHhhC
Confidence 999999997651 234666569999998873
No 79
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=38.17 E-value=83 Score=30.10 Aligned_cols=45 Identities=7% Similarity=-0.172 Sum_probs=30.1
Q ss_pred hhhhhHHHHHHhcCeeeeee---eeeeeceeeEEEecCCCccCccCCCCCCC
Q psy895 4 LSFLKDKEIEKKGGKRLRKI---TLVIRTRSIYCYECDSWKDRRCLDPFNYS 52 (269)
Q Consensus 4 ~~~~~~~~i~~~gg~~~~~~---~~~~~~~~i~~~~~~~~~~~~~~~~fi~~ 52 (269)
+...|.+.+++.|++++.+. .++ .+. ...++++++ ..+|+. +|.+
T Consensus 185 l~~~L~~~a~~~Gv~i~~~t~V~~i~-~~~-~~~v~t~~g-~v~A~~-VV~A 232 (460)
T TIGR03329 185 LVRGLRRVALELGVEIHENTPMTGLE-EGQ-PAVVRTPDG-QVTADK-VVLA 232 (460)
T ss_pred HHHHHHHHHHHcCCEEECCCeEEEEe-eCC-ceEEEeCCc-EEECCE-EEEc
Confidence 45678889999999999875 332 233 335778777 467877 4444
No 80
>PRK12831 putative oxidoreductase; Provisional
Probab=38.04 E-value=32 Score=33.18 Aligned_cols=37 Identities=19% Similarity=0.282 Sum_probs=27.8
Q ss_pred CCCCCCcEEEcCCCCCCCCC-cc-ch-HHHHHHHHHHHHhc
Q psy895 231 PFTLIPHLLLCGSGAHPGGG-VC-GA-PGYIAAQMVNRLMR 268 (269)
Q Consensus 231 ~~t~i~nLyl~G~~~~pG~G-v~-gv-sg~~~a~~il~~~~ 268 (269)
.+|.++|+|.+||.+. |.. +. .+ .|+.||..|...++
T Consensus 422 ~~Ts~pgVfAaGD~~~-g~~~v~~Ai~~G~~AA~~I~~~L~ 461 (464)
T PRK12831 422 GLTSKEGVFAGGDAVT-GAATVILAMGAGKKAAKAIDEYLS 461 (464)
T ss_pred CccCCCCEEEeCCCCC-CchHHHHHHHHHHHHHHHHHHHhc
Confidence 5678999999999985 333 22 23 89999999987764
No 81
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=38.02 E-value=35 Score=33.98 Aligned_cols=36 Identities=19% Similarity=0.211 Sum_probs=22.1
Q ss_pred CCCCCCCcEEEcCCCCC---CCCC------ccc--hHHHHHHHHHHH
Q psy895 230 SPFTLIPHLLLCGSGAH---PGGG------VCG--APGYIAAQMVNR 265 (269)
Q Consensus 230 ~~~t~i~nLyl~G~~~~---pG~G------v~g--vsg~~~a~~il~ 265 (269)
..+|+|||||-+|..+. .|.. +.. +.|+.|++.+.+
T Consensus 366 ~~~t~i~GLyAaGe~~~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa~ 412 (582)
T PRK09231 366 NCETRIKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRVAGEQAAE 412 (582)
T ss_pred CCccccCCEEecccccccccCCCCCcchhHHHHHHHHHHHHHHHHHH
Confidence 34688999999997642 1111 111 267777776654
No 82
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=37.84 E-value=36 Score=33.80 Aligned_cols=47 Identities=6% Similarity=-0.011 Sum_probs=28.3
Q ss_pred hhhhHHHHHHhcCeeeeee---eeeeeceeeEEEe---cCCCc--cCccCCCCCCC
Q psy895 5 SFLKDKEIEKKGGKRLRKI---TLVIRTRSIYCYE---CDSWK--DRRCLDPFNYS 52 (269)
Q Consensus 5 ~~~~~~~i~~~gg~~~~~~---~~~~~~~~i~~~~---~~~~~--~~~~~~~fi~~ 52 (269)
...|.+.+++.|.+++.+. .++.++.++..+. .++++ .++|+. +|-+
T Consensus 138 ~~~L~~~~~~~gi~i~~~t~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~Aka-VVlA 192 (575)
T PRK05945 138 LHELVNNLRRYGVTIYDEWYVMRLILEDNQAKGVVMYHIADGRLEVVRAKA-VMFA 192 (575)
T ss_pred HHHHHHHHhhCCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCeEEEEECCE-EEEC
Confidence 3457777888899998884 5555555655444 33443 355555 4433
No 83
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=37.69 E-value=37 Score=33.88 Aligned_cols=33 Identities=9% Similarity=-0.046 Sum_probs=22.4
Q ss_pred hhhhHHHHHHhcCeeeeee---eeeee-ceeeEEEec
Q psy895 5 SFLKDKEIEKKGGKRLRKI---TLVIR-TRSIYCYEC 37 (269)
Q Consensus 5 ~~~~~~~i~~~gg~~~~~~---~~~~~-~~~i~~~~~ 37 (269)
...|.+.+++.|.+++.+. .++.+ +.++..+.+
T Consensus 146 ~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~ 182 (588)
T PRK08958 146 LHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTA 182 (588)
T ss_pred HHHHHHHhhhcCCEEEeCcEEEEEEECCCCEEEEEEE
Confidence 3456677778888988874 55553 566777665
No 84
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=37.55 E-value=38 Score=32.62 Aligned_cols=38 Identities=18% Similarity=0.152 Sum_probs=27.5
Q ss_pred CCCCCCcEEEcCCCCCCCCCcc-ch-HHHHHHHHHHHHhc
Q psy895 231 PFTLIPHLLLCGSGAHPGGGVC-GA-PGYIAAQMVNRLMR 268 (269)
Q Consensus 231 ~~t~i~nLyl~G~~~~pG~Gv~-gv-sg~~~a~~il~~~~ 268 (269)
.+|.++|+|.+||.+....-+. .+ .|+.||..|...+.
T Consensus 426 ~~Ts~~gVfa~GD~~~g~~~~~~Av~~G~~AA~~i~~~L~ 465 (471)
T PRK12810 426 YQTSNPKVFAAGDMRRGQSLVVWAIAEGRQAARAIDAYLM 465 (471)
T ss_pred ccCCCCCEEEccccCCCchhHHHHHHHHHHHHHHHHHHHh
Confidence 4578999999999996211222 23 89999999987763
No 85
>PRK07121 hypothetical protein; Validated
Probab=37.37 E-value=37 Score=32.79 Aligned_cols=36 Identities=14% Similarity=0.030 Sum_probs=25.9
Q ss_pred hhhhhHHHHHHhcCeeeeee---eeeee-ceeeEEEecCC
Q psy895 4 LSFLKDKEIEKKGGKRLRKI---TLVIR-TRSIYCYECDS 39 (269)
Q Consensus 4 ~~~~~~~~i~~~gg~~~~~~---~~~~~-~~~i~~~~~~~ 39 (269)
+...|.+.+++.|++++.+. .++.+ +.++..+++++
T Consensus 179 ~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~ 218 (492)
T PRK07121 179 LMDPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARR 218 (492)
T ss_pred HHHHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEe
Confidence 44568888999999999885 55554 34677777643
No 86
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=36.57 E-value=38 Score=32.70 Aligned_cols=15 Identities=20% Similarity=0.213 Sum_probs=12.6
Q ss_pred CCCC-CCcEEEcCCCC
Q psy895 231 PFTL-IPHLLLCGSGA 245 (269)
Q Consensus 231 ~~t~-i~nLyl~G~~~ 245 (269)
.+++ ++|||++||-+
T Consensus 325 l~~k~~~~l~~AGqi~ 340 (436)
T PRK05335 325 LQLKKRPNLFFAGQIT 340 (436)
T ss_pred ccccCCCCEEeeeeec
Confidence 4554 89999999988
No 87
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=35.99 E-value=37 Score=32.67 Aligned_cols=49 Identities=6% Similarity=0.002 Sum_probs=37.9
Q ss_pred hhhhhhHHHHHHhcCeeeeee---eeeeeceeeEEEecCCCcc-CccCCCCCCC
Q psy895 3 LLSFLKDKEIEKKGGKRLRKI---TLVIRTRSIYCYECDSWKD-RRCLDPFNYS 52 (269)
Q Consensus 3 ~~~~~~~~~i~~~gg~~~~~~---~~~~~~~~i~~~~~~~~~~-~~~~~~fi~~ 52 (269)
.++..|++.++++|+++.-+. .++..+..+.-..+++++. ++|+. +|..
T Consensus 154 ~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg~~~~~~~~g~~~~~ak~-Vin~ 206 (429)
T COG0579 154 ELTRALAEEAQANGVELRLNTEVTGIEKQSDGVFVLNTSNGEETLEAKF-VINA 206 (429)
T ss_pred HHHHHHHHHHHHcCCEEEecCeeeEEEEeCCceEEEEecCCcEEEEeeE-EEEC
Confidence 367899999999999988775 4445444478888888877 89998 5555
No 88
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=35.96 E-value=35 Score=33.86 Aligned_cols=42 Identities=2% Similarity=-0.127 Sum_probs=24.4
Q ss_pred hhhHHHHHH-hcCeeeeee---eeeeeceeeEEEec---CCCc--cCccCC
Q psy895 6 FLKDKEIEK-KGGKRLRKI---TLVIRTRSIYCYEC---DSWK--DRRCLD 47 (269)
Q Consensus 6 ~~~~~~i~~-~gg~~~~~~---~~~~~~~~i~~~~~---~~~~--~~~~~~ 47 (269)
..|.+.+++ .|.+++.+. .++.++.++..+.+ ++++ .++|+.
T Consensus 141 ~~L~~~~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~Ak~ 191 (577)
T PRK06069 141 HTLYSRALRFDNIHFYDEHFVTSLIVENGVFKGVTAIDLKRGEFKVFQAKA 191 (577)
T ss_pred HHHHHHHHhcCCCEEEECCEEEEEEEECCEEEEEEEEEcCCCeEEEEECCc
Confidence 456666666 577887774 55555566665544 3443 345555
No 89
>KOG1593|consensus
Probab=35.77 E-value=47 Score=29.91 Aligned_cols=38 Identities=21% Similarity=0.352 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHCCCCCcceEEEEecChhHHHHhhCCCCCccccc
Q psy895 164 ANYATNVFSSIEQYCPGFTQDIVGYEILTPPDLEKEFGLTGGNIFHG 210 (269)
Q Consensus 164 ~~~a~~il~~le~~~P~i~~~I~~~~~~TP~t~~~y~~~~~GsiyG~ 210 (269)
++.++..|.+|.|+||.|...++...+ .|+.+++.||+
T Consensus 286 ~eAa~~~i~RI~khfp~F~gAvia~n~---------~G~ygaaC~g~ 323 (349)
T KOG1593|consen 286 AEAAQKAISRILKHFPDFSGAVIAANV---------LGSYGAACYGI 323 (349)
T ss_pred HHHHHHHHHHHHHhCccceeeEEEEec---------cCchhhhhccc
Confidence 567899999999999999999888764 57788888886
No 90
>COG3324 Predicted enzyme related to lactoylglutathione lyase [General function prediction only]
Probab=35.53 E-value=39 Score=26.88 Aligned_cols=35 Identities=20% Similarity=0.118 Sum_probs=25.1
Q ss_pred hhHHHHHHhcCeeeeeeeeee-eceeeEEEecCCCc
Q psy895 7 LKDKEIEKKGGKRLRKITLVI-RTRSIYCYECDSWK 41 (269)
Q Consensus 7 ~~~~~i~~~gg~~~~~~~~~~-~~~~i~~~~~~~~~ 41 (269)
.-++.+++.||+|++..+-+. .++...|+.++.-+
T Consensus 84 ~~l~rv~~~GG~V~~p~~~~p~~G~~a~~~Dp~Gn~ 119 (127)
T COG3324 84 ATLERVVAAGGKVLRPKTEFPGGGRIAHFVDPEGNR 119 (127)
T ss_pred HHHHHHHhcCCeEEecccccCCceEEEEEECCCCCE
Confidence 346789999999999985444 55667777776533
No 91
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=35.41 E-value=32 Score=32.21 Aligned_cols=30 Identities=27% Similarity=0.371 Sum_probs=19.7
Q ss_pred CCcEEEcCCCCCCCCCcc-----c-hHHHHHHHHHHH
Q psy895 235 IPHLLLCGSGAHPGGGVC-----G-APGYIAAQMVNR 265 (269)
Q Consensus 235 i~nLyl~G~~~~pG~Gv~-----g-vsg~~~a~~il~ 265 (269)
-+||||+||-+--- |-. | +.|+++|+..++
T Consensus 334 ~p~l~fAGQitG~E-GYveSaA~Gllag~naa~~~~g 369 (439)
T COG1206 334 RPNLFFAGQITGVE-GYVESAASGLLAGINAARLALG 369 (439)
T ss_pred CCCcEEeeeeecch-hhhHHhhhhHHHhhHHHHHhcC
Confidence 68999999988321 332 2 267777776654
No 92
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=35.02 E-value=41 Score=33.41 Aligned_cols=34 Identities=32% Similarity=0.560 Sum_probs=0.0
Q ss_pred CCCCcEEEcC-------CCCCCCCCccc----hHHHHHHHHHHHH
Q psy895 233 TLIPHLLLCG-------SGAHPGGGVCG----APGYIAAQMVNRL 266 (269)
Q Consensus 233 t~i~nLyl~G-------~~~~pG~Gv~g----vsg~~~a~~il~~ 266 (269)
.+|+|||-+| ....+|+|... +.|++|++.+.+.
T Consensus 527 ~pIpGLYAaG~~~gg~~g~~y~~~G~~lg~a~~fGriAg~~aa~~ 571 (578)
T PRK12843 527 QPISGLYACGNDMASIMGGTYPGPGITLGPAIVFAYLAARHAAKR 571 (578)
T ss_pred CCcCCceeccccccccccCCCCCcccchHHHHHHHHHHHHHHHHh
No 93
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=34.83 E-value=39 Score=33.70 Aligned_cols=36 Identities=25% Similarity=0.193 Sum_probs=22.6
Q ss_pred CCCCCCCcEEEcCCCCCCC-CCc--------cc--hHHHHHHHHHHH
Q psy895 230 SPFTLIPHLLLCGSGAHPG-GGV--------CG--APGYIAAQMVNR 265 (269)
Q Consensus 230 ~~~t~i~nLyl~G~~~~pG-~Gv--------~g--vsg~~~a~~il~ 265 (269)
..+|+|||||-+|..+..| +|- .. +.|+.|++.+.+
T Consensus 365 ~~~t~i~GLyAaGe~a~~G~hGanrl~g~sl~~~~v~G~~ag~~aa~ 411 (580)
T TIGR01176 365 NCETRIKGLFAVGECASVGLHGANRLGSNSLAELVVFGRRAGEAAAE 411 (580)
T ss_pred CcccccCCeEeeecccccCcCCCccccchhHHHHHHHHHHHHHHHHH
Confidence 4568899999999764211 221 11 367777777654
No 94
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=34.83 E-value=37 Score=32.41 Aligned_cols=34 Identities=26% Similarity=0.270 Sum_probs=0.0
Q ss_pred CCCCcEEEcCCCCCC---------CCCccch--HHHHHHHHHHHH
Q psy895 233 TLIPHLLLCGSGAHP---------GGGVCGA--PGYIAAQMVNRL 266 (269)
Q Consensus 233 t~i~nLyl~G~~~~p---------G~Gv~gv--sg~~~a~~il~~ 266 (269)
+||||||-+|-.+-- |.++... .|++|++.+.+.
T Consensus 416 ~~I~GLYAaGe~~gg~~~g~~y~~g~~l~~~~~~G~iag~~aa~~ 460 (466)
T PRK08274 416 RPSPNLFAAGEMMAGNVLGKGYPAGVGLTIGAVFGRIAGEEAARH 460 (466)
T ss_pred CCCCCceecccccccccccCCCccccchhhhhhhHHHHHHHHHHH
No 95
>PRK13984 putative oxidoreductase; Provisional
Probab=34.82 E-value=34 Score=34.09 Aligned_cols=37 Identities=35% Similarity=0.526 Sum_probs=28.7
Q ss_pred CCCCCCcEEEcCCCCCCCCCcc-ch-HHHHHHHHHHHHhc
Q psy895 231 PFTLIPHLLLCGSGAHPGGGVC-GA-PGYIAAQMVNRLMR 268 (269)
Q Consensus 231 ~~t~i~nLyl~G~~~~pG~Gv~-gv-sg~~~a~~il~~~~ 268 (269)
.+|.++|+|.+||.+. |..+. .+ .|+.||..|...+.
T Consensus 564 ~~Ts~~gVfAaGD~~~-~~~~v~Ai~~G~~AA~~I~~~L~ 602 (604)
T PRK13984 564 GQTSIPWLFAGGDIVH-GPDIIHGVADGYWAAEGIDMYLR 602 (604)
T ss_pred CccCCCCEEEecCcCC-chHHHHHHHHHHHHHHHHHHHhc
Confidence 5788999999999996 33433 23 89999999987764
No 96
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=34.72 E-value=38 Score=33.52 Aligned_cols=34 Identities=9% Similarity=0.027 Sum_probs=24.9
Q ss_pred hhhhHHHHHHhcCeeeeee---eeeeeceeeEEEecC
Q psy895 5 SFLKDKEIEKKGGKRLRKI---TLVIRTRSIYCYECD 38 (269)
Q Consensus 5 ~~~~~~~i~~~gg~~~~~~---~~~~~~~~i~~~~~~ 38 (269)
...|.+.+++.|.+++.+. +++.++.+|..+.+.
T Consensus 211 ~~~L~~~~~~~gv~v~~~t~v~~l~~~~g~v~Gv~~~ 247 (557)
T PRK07843 211 AAGLRIGLQRAGVPVLLNTPLTDLYVEDGRVTGVHAA 247 (557)
T ss_pred HHHHHHHHHcCCCEEEeCCEEEEEEEeCCEEEEEEEE
Confidence 4456688889999998885 666666677777663
No 97
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=34.60 E-value=48 Score=32.92 Aligned_cols=35 Identities=6% Similarity=-0.122 Sum_probs=25.3
Q ss_pred hhhhHHHHHHhcCeeeeee---eeeeeceeeEEEecCC
Q psy895 5 SFLKDKEIEKKGGKRLRKI---TLVIRTRSIYCYECDS 39 (269)
Q Consensus 5 ~~~~~~~i~~~gg~~~~~~---~~~~~~~~i~~~~~~~ 39 (269)
...|.+.+++.|.+++.+. .++.++.++..+.+.+
T Consensus 139 ~~~L~~~~~~~gv~i~~~~~~~~Li~~~g~v~Gv~~~~ 176 (566)
T PRK06452 139 LHTLFERTSGLNVDFYNEWFSLDLVTDNKKVVGIVAMQ 176 (566)
T ss_pred HHHHHHHHHhCCCEEEeCcEEEEEEEECCEEEEEEEEE
Confidence 3456777777888988774 6677777888887753
No 98
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=34.10 E-value=38 Score=32.39 Aligned_cols=37 Identities=22% Similarity=0.298 Sum_probs=27.1
Q ss_pred CCCCCCcEEEcCCCCCCCCC-cc-ch-HHHHHHHHHHHHhc
Q psy895 231 PFTLIPHLLLCGSGAHPGGG-VC-GA-PGYIAAQMVNRLMR 268 (269)
Q Consensus 231 ~~t~i~nLyl~G~~~~pG~G-v~-gv-sg~~~a~~il~~~~ 268 (269)
.+|.++|+|.+||.+. |.. +. .+ .|..+|..|...++
T Consensus 413 ~~Ts~~~VfA~GD~~~-~~~~~~~A~~~G~~aA~~I~~~l~ 452 (457)
T PRK11749 413 GRTSLPGVFAGGDIVT-GAATVVWAVGDGKDAAEAIHEYLE 452 (457)
T ss_pred CccCCCCEEEeCCcCC-CchHHHHHHHHHHHHHHHHHHHHh
Confidence 4677999999999984 222 22 23 89999999987764
No 99
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=34.06 E-value=47 Score=33.04 Aligned_cols=33 Identities=9% Similarity=-0.028 Sum_probs=21.7
Q ss_pred hhhhHHHHHHhcCeeeeee---eeeeec----eeeEEEec
Q psy895 5 SFLKDKEIEKKGGKRLRKI---TLVIRT----RSIYCYEC 37 (269)
Q Consensus 5 ~~~~~~~i~~~gg~~~~~~---~~~~~~----~~i~~~~~ 37 (269)
...|.+.+++.|.+++.+. .++.++ .++..+.+
T Consensus 143 ~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~ 182 (583)
T PRK08205 143 LQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVA 182 (583)
T ss_pred HHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEE
Confidence 3456777788888988884 555443 45665554
No 100
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=33.03 E-value=37 Score=32.28 Aligned_cols=33 Identities=27% Similarity=0.173 Sum_probs=24.6
Q ss_pred CCcEEEcCCCCC---C----CCCccc-h-HHHHHHHHHHHHh
Q psy895 235 IPHLLLCGSGAH---P----GGGVCG-A-PGYIAAQMVNRLM 267 (269)
Q Consensus 235 i~nLyl~G~~~~---p----G~Gv~g-v-sg~~~a~~il~~~ 267 (269)
-+|++++||.+. | |.||.. + ||..||+.|.+-+
T Consensus 294 ~~g~llvGDAAg~v~p~g~~g~Gi~~A~~SG~lAAeai~~a~ 335 (428)
T PRK10157 294 GDGVLIAGDAAGMCMNLGFTIRGMDLAIAAGEAAAKTVLSAM 335 (428)
T ss_pred cCCeEEEecccccccccCceeeeHHHHHHHHHHHHHHHHHHH
Confidence 489999999882 2 456653 2 9999999987653
No 101
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=32.81 E-value=47 Score=32.45 Aligned_cols=39 Identities=15% Similarity=0.061 Sum_probs=28.6
Q ss_pred CCCCCCCcEEEcCCCCCCCCC-cc-ch-HHHHHHHHHHHHhc
Q psy895 230 SPFTLIPHLLLCGSGAHPGGG-VC-GA-PGYIAAQMVNRLMR 268 (269)
Q Consensus 230 ~~~t~i~nLyl~G~~~~pG~G-v~-gv-sg~~~a~~il~~~~ 268 (269)
..+|.++|+|.+||.+..+.. +. .+ .|..||..|.+++.
T Consensus 472 ~~~Ts~p~IyAaGDv~~~~~~~~~~A~~~G~~Aa~~i~~~~~ 513 (515)
T TIGR03140 472 RGRTSVPGIFAAGDVTTVPYKQIIIAMGEGAKAALSAFDYLI 513 (515)
T ss_pred CCCCCCCCEEEcccccCCccceEEEEEccHHHHHHHHHHHHh
Confidence 356789999999999863222 22 23 89999999887764
No 102
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=32.74 E-value=56 Score=32.13 Aligned_cols=34 Identities=12% Similarity=0.057 Sum_probs=22.4
Q ss_pred hhhhhHHHHHHhcCeeeeee---eeeeece-eeEEEec
Q psy895 4 LSFLKDKEIEKKGGKRLRKI---TLVIRTR-SIYCYEC 37 (269)
Q Consensus 4 ~~~~~~~~i~~~gg~~~~~~---~~~~~~~-~i~~~~~ 37 (269)
+.+.|.+.+++.|.+++.+. .++.++. ++..+.+
T Consensus 136 i~~~L~~~~~~~gv~i~~~t~v~~Li~~~~~~v~Gv~~ 173 (543)
T PRK06263 136 MMMGLMEYLIKERIKILEEVMAIKLIVDENREVIGAIF 173 (543)
T ss_pred HHHHHHHHHhcCCCEEEeCeEeeeeEEeCCcEEEEEEE
Confidence 34567777888899998885 5555443 3766553
No 103
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=32.69 E-value=44 Score=33.31 Aligned_cols=32 Identities=6% Similarity=-0.013 Sum_probs=23.1
Q ss_pred hhHHHHHHhcCeeeeee---eeeee-ceeeEEEecC
Q psy895 7 LKDKEIEKKGGKRLRKI---TLVIR-TRSIYCYECD 38 (269)
Q Consensus 7 ~~~~~i~~~gg~~~~~~---~~~~~-~~~i~~~~~~ 38 (269)
.|.+.+++.|.+++.++ +++.+ +.+|..+.++
T Consensus 218 ~l~~~~~~~gv~i~~~~~~~~Li~d~~g~V~Gv~~~ 253 (584)
T PRK12835 218 RLRLALKDAGVPLWLDSPMTELITDPDGAVVGAVVE 253 (584)
T ss_pred HHHHHHHhCCceEEeCCEEEEEEECCCCcEEEEEEE
Confidence 35677889999999885 66664 4568777664
No 104
>PRK08401 L-aspartate oxidase; Provisional
Probab=32.14 E-value=47 Score=31.98 Aligned_cols=43 Identities=16% Similarity=0.067 Sum_probs=26.3
Q ss_pred hhhhhHHHHHHhcCeeeeee--eeeeeceeeEEEecCCCccCccCC
Q psy895 4 LSFLKDKEIEKKGGKRLRKI--TLVIRTRSIYCYECDSWKDRRCLD 47 (269)
Q Consensus 4 ~~~~~~~~i~~~gg~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~ 47 (269)
+...|.+.+++.|.+++... .++.++.++..+.++ ++..+++.
T Consensus 122 i~~~L~~~~~~~gv~i~~~~v~~l~~~~g~v~Gv~~~-g~~i~a~~ 166 (466)
T PRK08401 122 IIKILYKHARELGVNFIRGFAEELAIKNGKAYGVFLD-GELLKFDA 166 (466)
T ss_pred HHHHHHHHHHhcCCEEEEeEeEEEEeeCCEEEEEEEC-CEEEEeCe
Confidence 44567788888999987653 444455566666664 33344444
No 105
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=31.77 E-value=50 Score=31.88 Aligned_cols=37 Identities=19% Similarity=0.173 Sum_probs=27.7
Q ss_pred CCCCCCcEEEcCCCCCCCCCc--cch-HHHHHHHHHHHHhc
Q psy895 231 PFTLIPHLLLCGSGAHPGGGV--CGA-PGYIAAQMVNRLMR 268 (269)
Q Consensus 231 ~~t~i~nLyl~G~~~~pG~Gv--~gv-sg~~~a~~il~~~~ 268 (269)
.+|.++|+|.+||.+.+ ... ..+ .|+.+|..|...++
T Consensus 427 ~~T~~~gVfa~GD~~~~-~~~~~~Ai~~G~~aA~~i~~~L~ 466 (467)
T TIGR01318 427 YQTTNPKIFAGGDAVRG-ADLVVTAVAEGRQAAQGILDWLG 466 (467)
T ss_pred ccCCCCCEEEECCcCCC-ccHHHHHHHHHHHHHHHHHHHhc
Confidence 46779999999999863 332 223 89999999987764
No 106
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=31.49 E-value=45 Score=33.00 Aligned_cols=33 Identities=30% Similarity=0.474 Sum_probs=0.0
Q ss_pred CCCCcEEEcCCCCC---------CCCCccch--HHHHHHHHHHH
Q psy895 233 TLIPHLLLCGSGAH---------PGGGVCGA--PGYIAAQMVNR 265 (269)
Q Consensus 233 t~i~nLyl~G~~~~---------pG~Gv~gv--sg~~~a~~il~ 265 (269)
.||+|||-+|..+- +|.++... +|++|++.+.+
T Consensus 505 ~pIpGLYAAG~~~gg~~g~~Y~~~G~~l~~a~~~GriAg~~aa~ 548 (557)
T PRK12844 505 SVIPGLYATGNCTASVMGRTYPGAGASIGNSFVFGYIAALHAAG 548 (557)
T ss_pred CCccceeeccccccccccCCCCcCccchHHHHHHHHHHHHHHHh
No 107
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=31.38 E-value=56 Score=31.72 Aligned_cols=38 Identities=32% Similarity=0.301 Sum_probs=30.8
Q ss_pred CCCCCCcEEEcCCCCCCCCCccc--hHHHHHHHHHHHHhc
Q psy895 231 PFTLIPHLLLCGSGAHPGGGVCG--APGYIAAQMVNRLMR 268 (269)
Q Consensus 231 ~~t~i~nLyl~G~~~~pG~Gv~g--vsg~~~a~~il~~~~ 268 (269)
..|.|+|||-+|+++--.+|+.. +.|+.+|+.|+.+++
T Consensus 445 ~~t~i~gLy~aGdGAG~argI~~Aaa~Gi~~A~~i~~k~~ 484 (486)
T COG2509 445 LSTSIKGLYPAGDGAGLARGIVSAAADGIKAAEGIARKYG 484 (486)
T ss_pred ceeeecceEEccccccccchhHHHhhhhHHHHHHHHHHhc
Confidence 46779999999999964457753 499999999998764
No 108
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=31.27 E-value=61 Score=20.90 Aligned_cols=18 Identities=33% Similarity=0.267 Sum_probs=15.0
Q ss_pred hhhHHHHHHhcCeeeeee
Q psy895 6 FLKDKEIEKKGGKRLRKI 23 (269)
Q Consensus 6 ~~~~~~i~~~gg~~~~~~ 23 (269)
..|.+.|+++||++....
T Consensus 16 ~~l~~~i~~~Gg~v~~~~ 33 (72)
T cd00027 16 DELKELIEKLGGKVTSSV 33 (72)
T ss_pred HHHHHHHHHcCCEEeccc
Confidence 568899999999988754
No 109
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=31.23 E-value=47 Score=31.64 Aligned_cols=47 Identities=4% Similarity=-0.034 Sum_probs=36.4
Q ss_pred hhhhHHHHHHhcCeeeeee---eeeeeceeeEEEecCCCccCccCCCCCCC
Q psy895 5 SFLKDKEIEKKGGKRLRKI---TLVIRTRSIYCYECDSWKDRRCLDPFNYS 52 (269)
Q Consensus 5 ~~~~~~~i~~~gg~~~~~~---~~~~~~~~i~~~~~~~~~~~~~~~~fi~~ 52 (269)
-+.|.+.+++.|++++.+. .++.++..+..+++++...+.|+. +|-+
T Consensus 112 v~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~-vILA 161 (409)
T PF03486_consen 112 VDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEADA-VILA 161 (409)
T ss_dssp HHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEEEESE-EEE-
T ss_pred HHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcccccCCE-EEEe
Confidence 3678889999999999885 667778888999998888999999 6655
No 110
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=31.20 E-value=1.2e+02 Score=28.17 Aligned_cols=73 Identities=14% Similarity=0.005 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHCCCCCcceEEEEecChhHHHHhhCCCCCccccccccccccccCCCCCCCCCCCCCCCCCcEEEcCCC
Q psy895 165 NYATNVFSSIEQYCPGFTQDIVGYEILTPPDLEKEFGLTGGNIFHGALSLNQLLFNRPLPIQGPSSPFTLIPHLLLCGSG 244 (269)
Q Consensus 165 ~~a~~il~~le~~~P~i~~~I~~~~~~TP~t~~~y~~~~~GsiyG~~~~~~q~~~~rp~~~~~~~~~~t~i~nLyl~G~~ 244 (269)
+..+.+++.+.+++|++++... ..+.| ++....| . .|..+ +.+.+|||++-..
T Consensus 332 ~~~~~l~~~~~~~~P~l~~~~~----------~~w~G-----~r~~t~D--~----~PiiG------~~~~~~l~~~~G~ 384 (410)
T PRK12409 332 DRIRPLVDWVRRNFPDVSTRRV----------VPWAG-----LRPMMPN--M----MPRVG------RGRRPGVFYNTGH 384 (410)
T ss_pred HHHHHHHHHHHHhCCCCCcccc----------ceecc-----cCCCCCC--C----CCeeC------CCCCCCEEEecCC
Confidence 4678889999999999975421 01111 2222222 1 13211 1236999987653
Q ss_pred CCCCCCccc--hHHHHHHHHHHHH
Q psy895 245 AHPGGGVCG--APGYIAAQMVNRL 266 (269)
Q Consensus 245 ~~pG~Gv~g--vsg~~~a~~il~~ 266 (269)
- |.|+.. +.|...|+.|++.
T Consensus 385 ~--~~G~~~ap~~g~~lA~~i~~~ 406 (410)
T PRK12409 385 G--HLGWTLSAATADLVAQVVAQK 406 (410)
T ss_pred c--ccchhhcccHHHHHHHHHcCC
Confidence 3 457764 4888888888754
No 111
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=30.68 E-value=53 Score=32.06 Aligned_cols=39 Identities=15% Similarity=0.043 Sum_probs=28.1
Q ss_pred CCCCCCCcEEEcCCCCCCCC--Cccch-HHHHHHHHHHHHhc
Q psy895 230 SPFTLIPHLLLCGSGAHPGG--GVCGA-PGYIAAQMVNRLMR 268 (269)
Q Consensus 230 ~~~t~i~nLyl~G~~~~pG~--Gv~gv-sg~~~a~~il~~~~ 268 (269)
..+|.++|+|.+||.+..+. .+..+ .|..||..+.+++.
T Consensus 471 ~l~Ts~p~IyAaGDv~~~~~k~~~~A~~eG~~Aa~~~~~~l~ 512 (517)
T PRK15317 471 RGATSVPGVFAAGDCTTVPYKQIIIAMGEGAKAALSAFDYLI 512 (517)
T ss_pred CCCCCCCCEEECccccCCCCCEEEEhhhhHHHHHHHHHHHHh
Confidence 35678999999999997322 22333 78888888877753
No 112
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=30.31 E-value=57 Score=31.10 Aligned_cols=49 Identities=14% Similarity=0.047 Sum_probs=38.3
Q ss_pred hhhhhHHHHHHhcCeeeeee---eeeeeceeeEEEecCCCccCccCCCCCCCCC
Q psy895 4 LSFLKDKEIEKKGGKRLRKI---TLVIRTRSIYCYECDSWKDRRCLDPFNYSVL 54 (269)
Q Consensus 4 ~~~~~~~~i~~~gg~~~~~~---~~~~~~~~i~~~~~~~~~~~~~~~~fi~~~~ 54 (269)
+-+.|.+++++.|.+++.+. .++..+ ...-+.+++++.++|+- +|-++-
T Consensus 113 Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~-~~f~l~t~~g~~i~~d~-lilAtG 164 (408)
T COG2081 113 IVDALLKELEALGVTIRTRSRVSSVEKDD-SGFRLDTSSGETVKCDS-LILATG 164 (408)
T ss_pred HHHHHHHHHHHcCcEEEecceEEeEEecC-ceEEEEcCCCCEEEccE-EEEecC
Confidence 45678999999999999996 433333 67889999999999999 665543
No 113
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=30.28 E-value=42 Score=33.37 Aligned_cols=34 Identities=38% Similarity=0.460 Sum_probs=0.0
Q ss_pred CCCCcEEEcCCCC-------CCCCCccc----hHHHHHHHHHHHH
Q psy895 233 TLIPHLLLCGSGA-------HPGGGVCG----APGYIAAQMVNRL 266 (269)
Q Consensus 233 t~i~nLyl~G~~~-------~pG~Gv~g----vsg~~~a~~il~~ 266 (269)
.||+|||-+|-.+ .+|+|... +.|++|++.+.++
T Consensus 520 ~pI~GLYAaG~~~gg~~g~~Y~g~G~~lg~a~~fGriAg~~aa~~ 564 (564)
T PRK12845 520 SVIDGLYAIGNTAANAFGATYPGAGATIGQGLVYGYIAAQDAAAR 564 (564)
T ss_pred CCCCCeeEeeeeccccccCCCCCcchhhHHHHHHHHHHHHHHhcC
No 114
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=30.00 E-value=55 Score=34.89 Aligned_cols=37 Identities=19% Similarity=0.136 Sum_probs=27.7
Q ss_pred CCCCCcEEEcCCCCCCCCCccc--hHHHHHHHHHHHHhcC
Q psy895 232 FTLIPHLLLCGSGAHPGGGVCG--APGYIAAQMVNRLMRK 269 (269)
Q Consensus 232 ~t~i~nLyl~G~~~~pG~Gv~g--vsg~~~a~~il~~~~~ 269 (269)
.|.++|+|.+|+.+.. .++.. ..|..||..|+.++++
T Consensus 435 ~t~v~gVyaaGD~~g~-~~~~~A~~eG~~Aa~~i~~~lg~ 473 (985)
T TIGR01372 435 GDAVQGCILAGAANGL-FGLAAALADGAAAGAAAARAAGF 473 (985)
T ss_pred CCCCCCeEEeeccCCc-cCHHHHHHHHHHHHHHHHHHcCC
Confidence 4669999999987743 24433 2899999999888764
No 115
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=29.98 E-value=49 Score=31.67 Aligned_cols=36 Identities=25% Similarity=0.288 Sum_probs=26.4
Q ss_pred CCCCCCcEEEcCCCCCCCCCc-c-ch-HHHHHHHHHHHHh
Q psy895 231 PFTLIPHLLLCGSGAHPGGGV-C-GA-PGYIAAQMVNRLM 267 (269)
Q Consensus 231 ~~t~i~nLyl~G~~~~pG~Gv-~-gv-sg~~~a~~il~~~ 267 (269)
.+|.++|+|.+||.+. |... . .+ .|+.||..|...|
T Consensus 411 ~~Ts~~~VfA~GD~~~-g~~~v~~Ai~~G~~AA~~I~~~L 449 (449)
T TIGR01316 411 QRTSIPGVFAGGDIIL-GAATVIRAMGQGKRAAKSINEYL 449 (449)
T ss_pred CccCCCCEEEecCCCC-CcHHHHHHHHHHHHHHHHHHhhC
Confidence 4778999999999985 3332 2 23 8999999887653
No 116
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=29.69 E-value=65 Score=29.96 Aligned_cols=31 Identities=16% Similarity=0.114 Sum_probs=23.0
Q ss_pred CCCcEEEcCCCCCCCCCccc--hHHHHHHHHHHHH
Q psy895 234 LIPHLLLCGSGAHPGGGVCG--APGYIAAQMVNRL 266 (269)
Q Consensus 234 ~i~nLyl~G~~~~pG~Gv~g--vsg~~~a~~il~~ 266 (269)
+.+|||++.... |+|+.. ++|...|+.|++.
T Consensus 370 ~~~gl~~a~G~~--g~G~~~ap~~g~~la~li~g~ 402 (416)
T PRK00711 370 RYKNLWLNTGHG--TLGWTMACGSGQLLADLISGR 402 (416)
T ss_pred CCCCEEEecCCc--hhhhhhhhhHHHHHHHHHcCC
Confidence 468999876654 567764 4899999988763
No 117
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=29.47 E-value=48 Score=33.09 Aligned_cols=15 Identities=33% Similarity=0.465 Sum_probs=12.7
Q ss_pred CCCCCCcEEEcCCCC
Q psy895 231 PFTLIPHLLLCGSGA 245 (269)
Q Consensus 231 ~~t~i~nLyl~G~~~ 245 (269)
.+|+|||||-+|..+
T Consensus 364 ~~t~I~GLyAaGE~~ 378 (589)
T PRK08641 364 QMTNIPGLFAAGECD 378 (589)
T ss_pred CCeECCCEEECcccc
Confidence 467899999999865
No 118
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=29.42 E-value=50 Score=32.05 Aligned_cols=37 Identities=27% Similarity=0.374 Sum_probs=27.2
Q ss_pred CCCCCCCcEEEcCCCCCCCCC-cc-ch-HHHHHHHHHHHHh
Q psy895 230 SPFTLIPHLLLCGSGAHPGGG-VC-GA-PGYIAAQMVNRLM 267 (269)
Q Consensus 230 ~~~t~i~nLyl~G~~~~pG~G-v~-gv-sg~~~a~~il~~~ 267 (269)
..+|.++|+|.+||.+. |.. +. .+ .|+.||..|...+
T Consensus 439 ~~~Ts~~gVfAaGD~~~-g~~~~~~Av~~G~~AA~~i~~~L 478 (485)
T TIGR01317 439 DYSTSIPGVFAAGDCRR-GQSLIVWAINEGRKAAAAVDRYL 478 (485)
T ss_pred CceECCCCEEEeeccCC-CcHHHHHHHHHHHHHHHHHHHHH
Confidence 35678999999999985 232 22 23 8999999987765
No 119
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=29.03 E-value=64 Score=32.75 Aligned_cols=32 Identities=19% Similarity=0.160 Sum_probs=23.6
Q ss_pred hhhHHHHHHhcCeeeeee---eeeeeceeeEEEec
Q psy895 6 FLKDKEIEKKGGKRLRKI---TLVIRTRSIYCYEC 37 (269)
Q Consensus 6 ~~~~~~i~~~gg~~~~~~---~~~~~~~~i~~~~~ 37 (269)
..|.+.+++.|.+++.+. .++.++.++..+.+
T Consensus 162 ~~L~~~~~~~gv~i~~~~~~~~Li~~~g~v~Gv~~ 196 (657)
T PRK08626 162 YAVDNEAIKLGVPVHDRKEAIALIHDGKRCYGAVV 196 (657)
T ss_pred HHHHHHHHhCCCEEEeeEEEEEEEEECCEEEEEEE
Confidence 357788888999999885 66666667666655
No 120
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=28.80 E-value=62 Score=30.98 Aligned_cols=48 Identities=13% Similarity=0.084 Sum_probs=32.3
Q ss_pred hhhhhHHHHHHhcCeeeeee---eeeeeceeeEEEecCCCc--cCccCCCCCCC
Q psy895 4 LSFLKDKEIEKKGGKRLRKI---TLVIRTRSIYCYECDSWK--DRRCLDPFNYS 52 (269)
Q Consensus 4 ~~~~~~~~i~~~gg~~~~~~---~~~~~~~~i~~~~~~~~~--~~~~~~~fi~~ 52 (269)
+++.|.+.+++.|++++.+. .++..+.++..+...+++ ..+|+. ++-+
T Consensus 261 L~~aL~~~l~~~Gv~I~~g~~V~~v~~~~~~V~~v~~~~g~~~~i~AD~-VVLA 313 (422)
T PRK05329 261 LQNALRRAFERLGGRIMPGDEVLGAEFEGGRVTAVWTRNHGDIPLRARH-FVLA 313 (422)
T ss_pred HHHHHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEEEeeCCceEEEECCE-EEEe
Confidence 56789999999999998875 455556667666544443 356666 4444
No 121
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=28.59 E-value=61 Score=32.36 Aligned_cols=32 Identities=3% Similarity=-0.089 Sum_probs=20.1
Q ss_pred hhhHHHHHHhcCeeeeee---eeeee-ceeeEEEec
Q psy895 6 FLKDKEIEKKGGKRLRKI---TLVIR-TRSIYCYEC 37 (269)
Q Consensus 6 ~~~~~~i~~~gg~~~~~~---~~~~~-~~~i~~~~~ 37 (269)
..|.+..++.|.+++.+. .++.+ +.++..+.+
T Consensus 152 ~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~ 187 (591)
T PRK07057 152 HTLYQQNVAAKTQFFVEWMALDLIRDADGDVLGVTA 187 (591)
T ss_pred HHHHHHHHhcCCEEEeCcEEEEEEEcCCCeEEEEEE
Confidence 445566677888887774 44543 456666655
No 122
>PRK08275 putative oxidoreductase; Provisional
Probab=28.53 E-value=52 Score=32.49 Aligned_cols=34 Identities=6% Similarity=-0.002 Sum_probs=24.1
Q ss_pred hhhhhHHHHHHhcCeeeeee---eeeee-ceeeEEEec
Q psy895 4 LSFLKDKEIEKKGGKRLRKI---TLVIR-TRSIYCYEC 37 (269)
Q Consensus 4 ~~~~~~~~i~~~gg~~~~~~---~~~~~-~~~i~~~~~ 37 (269)
+.+.|.+.+++.|.+++.+. .++.+ +.++..+.+
T Consensus 139 i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~g~v~Gv~~ 176 (554)
T PRK08275 139 IKKVLYRQLKRARVLITNRIMATRLLTDADGRVAGALG 176 (554)
T ss_pred HHHHHHHHHHHCCCEEEcceEEEEEEEcCCCeEEEEEE
Confidence 34677888888999999885 65555 556666654
No 123
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=28.51 E-value=60 Score=34.73 Aligned_cols=37 Identities=27% Similarity=0.380 Sum_probs=27.9
Q ss_pred CCCCCCcEEEcCCCCCCCCC-cc-ch-HHHHHHHHHHHHhc
Q psy895 231 PFTLIPHLLLCGSGAHPGGG-VC-GA-PGYIAAQMVNRLMR 268 (269)
Q Consensus 231 ~~t~i~nLyl~G~~~~pG~G-v~-gv-sg~~~a~~il~~~~ 268 (269)
.+|.++|+|.+||.+. |.. +. .+ .|+.||..|...+.
T Consensus 716 ~~Ts~pgVFAaGDv~~-G~~~vv~Ai~~Gr~AA~~I~~~L~ 755 (1006)
T PRK12775 716 QSTNLPGVFAGGDIVT-GGATVILAMGAGRRAARSIATYLR 755 (1006)
T ss_pred cCCCCCCEEEecCcCC-CccHHHHHHHHHHHHHHHHHHHHh
Confidence 5788999999999985 333 22 23 89999999987653
No 124
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=28.42 E-value=50 Score=33.25 Aligned_cols=17 Identities=29% Similarity=0.640 Sum_probs=13.8
Q ss_pred CCCCCCCcEEEcCCCCC
Q psy895 230 SPFTLIPHLLLCGSGAH 246 (269)
Q Consensus 230 ~~~t~i~nLyl~G~~~~ 246 (269)
..+|.|+|||-+|..+-
T Consensus 401 ~~~T~i~gLyA~Ge~~~ 417 (614)
T TIGR02061 401 NRMTTVEGLFTCGDGVG 417 (614)
T ss_pred CCccccCCEEeceeccc
Confidence 34688999999999763
No 125
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=28.26 E-value=50 Score=32.64 Aligned_cols=37 Identities=19% Similarity=0.195 Sum_probs=26.8
Q ss_pred CCCCCCcEEEcCCCCCCCCC--ccch-HHHHHHHHHHHHhc
Q psy895 231 PFTLIPHLLLCGSGAHPGGG--VCGA-PGYIAAQMVNRLMR 268 (269)
Q Consensus 231 ~~t~i~nLyl~G~~~~pG~G--v~gv-sg~~~a~~il~~~~ 268 (269)
..|.++|+|.+||.+. |.. +..+ .|+.+|..|...+.
T Consensus 405 ~~ts~~~Vfa~GD~~~-g~~~v~~Av~~G~~aA~~i~~~L~ 444 (564)
T PRK12771 405 MMTGRPGVFAGGDMVP-GPRTVTTAIGHGKKAARNIDAFLG 444 (564)
T ss_pred ccCCCCCEEeccCcCC-CchHHHHHHHHHHHHHHHHHHHHc
Confidence 4567999999999986 232 2223 89999999877653
No 126
>PRK15405 ethanolamine utilization protein EutL; Provisional
Probab=28.22 E-value=1.9e+02 Score=25.23 Aligned_cols=49 Identities=8% Similarity=-0.035 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHC----CCCCcceEE--EEecChhHHHHh-hCCCCCccccc
Q psy895 162 DKANYATNVFSSIEQYC----PGFTQDIVG--YEILTPPDLEKE-FGLTGGNIFHG 210 (269)
Q Consensus 162 ~K~~~a~~il~~le~~~----P~i~~~I~~--~~~~TP~t~~~y-~~~~~GsiyG~ 210 (269)
.-++-.+..++.+|+.+ -+=.+++++ .+++-.-+|-.. +|.+.|..||+
T Consensus 94 dVrsAveaa~~~i~~~~~f~~~n~~g~~~~~a~~~aRag~~l~k~~g~~~G~a~~~ 149 (217)
T PRK15405 94 EVRAGLDAMVAFIENGAAFQSANDDDSTAFFAHVVSRTGSYLSKTAGIAEGEPLAY 149 (217)
T ss_pred HHHHHHHHHHHHHHhhhceEeeCCCCCEEEEEEEcccHHHHHHHHcCCCCCceeEE
Confidence 45566788888888853 344689999 666655555444 89999999886
No 127
>PRK07512 L-aspartate oxidase; Provisional
Probab=28.15 E-value=60 Score=31.76 Aligned_cols=34 Identities=6% Similarity=-0.082 Sum_probs=20.5
Q ss_pred hhhhHHHHHHh-cCeeeeee---eeeeeceeeEEEecC
Q psy895 5 SFLKDKEIEKK-GGKRLRKI---TLVIRTRSIYCYECD 38 (269)
Q Consensus 5 ~~~~~~~i~~~-gg~~~~~~---~~~~~~~~i~~~~~~ 38 (269)
-..|.+.+++. |.+++.+. .++.++.++..+.+.
T Consensus 139 ~~~L~~~~~~~~gV~i~~~~~v~~Li~~~g~v~Gv~~~ 176 (513)
T PRK07512 139 MRALIAAVRATPSITVLEGAEARRLLVDDGAVAGVLAA 176 (513)
T ss_pred HHHHHHHHHhCCCCEEEECcChhheeecCCEEEEEEEE
Confidence 34566667665 67877774 544455566665553
No 128
>PF05199 GMC_oxred_C: GMC oxidoreductase; InterPro: IPR007867 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. The function of this C-terminal conserved domain is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0055114 oxidation-reduction process; PDB: 3BG7_F 2IGM_D 3BLY_A 3BG6_H 3LSK_A 2IGO_A 3K4B_A 3K4L_B 2IGN_B 3K4M_H ....
Probab=27.74 E-value=53 Score=25.49 Aligned_cols=28 Identities=14% Similarity=0.158 Sum_probs=17.6
Q ss_pred CCcEEEcCCCCCCCC-Cc-cchHHHHHHHH
Q psy895 235 IPHLLLCGSGAHPGG-GV-CGAPGYIAAQM 262 (269)
Q Consensus 235 i~nLyl~G~~~~pG~-Gv-~gvsg~~~a~~ 262 (269)
++|||.+++|++|-. +. |.++....|++
T Consensus 114 ~~nL~V~DaSv~P~~~~~np~~t~~ala~r 143 (144)
T PF05199_consen 114 VRNLRVADASVFPTSPGANPTLTIMALAER 143 (144)
T ss_dssp SBSEEE-SGGGSSS-SSSSSHHHHHHHHHH
T ss_pred eeeEEECCCCcCCCCCCcCcHHHHHHHeeC
Confidence 899999999999854 22 22355555544
No 129
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=27.54 E-value=48 Score=32.37 Aligned_cols=32 Identities=6% Similarity=0.007 Sum_probs=20.9
Q ss_pred hhHHHHHH-hcCeeeeee---eeeeeceeeEEEecC
Q psy895 7 LKDKEIEK-KGGKRLRKI---TLVIRTRSIYCYECD 38 (269)
Q Consensus 7 ~~~~~i~~-~gg~~~~~~---~~~~~~~~i~~~~~~ 38 (269)
.|.+.+++ .|.+++.+. .++.++.+|..+.++
T Consensus 178 ~l~~~~~~~~gv~i~~~t~~~~Li~~~g~v~Gv~~~ 213 (513)
T PRK12837 178 RFLAALARFPNARLRLNTPLVELVVEDGRVVGAVVE 213 (513)
T ss_pred HHHHHHHhCCCCEEEeCCEEEEEEecCCEEEEEEEE
Confidence 34444555 488998884 666666778777653
No 130
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=27.16 E-value=59 Score=30.79 Aligned_cols=34 Identities=29% Similarity=0.369 Sum_probs=0.0
Q ss_pred CCCCcEEEcCCCCCC---------CCCccch--HHHHHHHHHHHH
Q psy895 233 TLIPHLLLCGSGAHP---------GGGVCGA--PGYIAAQMVNRL 266 (269)
Q Consensus 233 t~i~nLyl~G~~~~p---------G~Gv~gv--sg~~~a~~il~~ 266 (269)
.||||||-+|-.+.- |.++... .|++|++.+.+.
T Consensus 385 ~~I~GLYAaG~~~~g~~~g~~y~~G~~~~~a~~~GriAg~~aa~~ 429 (432)
T TIGR02485 385 VAPDNLFAAGTNMAGNVLGQGYLAGAGLTIAAVFGRIAGRAAARL 429 (432)
T ss_pred CCCCCeeecccccccccccCCCccchhhHHHHHHHHHHHHHHHHh
No 131
>PRK07804 L-aspartate oxidase; Provisional
Probab=27.09 E-value=66 Score=31.68 Aligned_cols=35 Identities=6% Similarity=-0.054 Sum_probs=23.4
Q ss_pred hhhhhHHHHHHhcCeeeeee---eeeeec-eeeEEEecC
Q psy895 4 LSFLKDKEIEKKGGKRLRKI---TLVIRT-RSIYCYECD 38 (269)
Q Consensus 4 ~~~~~~~~i~~~gg~~~~~~---~~~~~~-~~i~~~~~~ 38 (269)
+...|.+.+++.|.+++.+. .++.++ .++..+.+.
T Consensus 146 i~~~L~~~~~~~gV~i~~~~~v~~Li~~~~g~v~Gv~~~ 184 (541)
T PRK07804 146 VQRALDAAVRADPLDIREHALALDLLTDGTGAVAGVTLH 184 (541)
T ss_pred HHHHHHHHHHhCCCEEEECeEeeeeEEcCCCeEEEEEEE
Confidence 44567788888898888774 554443 466666553
No 132
>COG4741 Predicted secreted endonuclease distantly related to archaeal Holliday junction resolvase [Nucleotide transport and metabolism]
Probab=26.95 E-value=33 Score=28.20 Aligned_cols=35 Identities=31% Similarity=0.256 Sum_probs=27.5
Q ss_pred HHCCCCC-cceEEEEecChhHHHHhhCCCCCccccc
Q psy895 176 QYCPGFT-QDIVGYEILTPPDLEKEFGLTGGNIFHG 210 (269)
Q Consensus 176 ~~~P~i~-~~I~~~~~~TP~t~~~y~~~~~GsiyG~ 210 (269)
-+||+|+ +-=..+++.||.||-=|-|...|.+-.+
T Consensus 97 Pffp~f~ynPkD~RfIGTPvD~iVFdGLs~G~i~~I 132 (175)
T COG4741 97 PFFPEFKYNPKDARFIGTPVDFIVFDGLSEGNIESI 132 (175)
T ss_pred ccccCCCcCCccceeeCCCceEEEEcCCCcCceeEE
Confidence 3578887 4445689999999999999999987553
No 133
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=26.70 E-value=58 Score=29.89 Aligned_cols=36 Identities=22% Similarity=0.272 Sum_probs=25.9
Q ss_pred CCCCCCcEEEcCCCCCCCCCccc--h-HHHHHHHHHHHHh
Q psy895 231 PFTLIPHLLLCGSGAHPGGGVCG--A-PGYIAAQMVNRLM 267 (269)
Q Consensus 231 ~~t~i~nLyl~G~~~~pG~Gv~g--v-sg~~~a~~il~~~ 267 (269)
.+|..+|+|.+||.+. |..... + .|..+|..|...+
T Consensus 311 ~~t~~~~vyaiGD~~~-~~~~~~~A~~~g~~aa~~i~~~l 349 (352)
T PRK12770 311 HMTSREGVFAAGDVVT-GPSKIGKAIKSGLRAAQSIHEWL 349 (352)
T ss_pred cccCCCCEEEEccccc-CcchHHHHHHHHHHHHHHHHHHH
Confidence 3567899999999886 223322 2 7888999887765
No 134
>TIGR02867 spore_II_P stage II sporulation protein P. Stage II sporulation protein P is a protein of the endospore formation program in a number of lineages in the Firmicutes (low-GC Gram-positive bacteria). It is expressed in the mother cell compartment, under control of Sigma-E. SpoIIP, along with SpoIIM and SpoIID, is one of three major proteins involved in engulfment of the forespore by the mother cell. This protein family is named for the single member in Bacillus subtilis, although most sporulating bacteria have two members.
Probab=26.01 E-value=2.3e+02 Score=24.17 Aligned_cols=30 Identities=17% Similarity=0.378 Sum_probs=24.9
Q ss_pred CCcHHHHHHHHHHHHHHHHHHCCCCCcceEEE
Q psy895 157 DWTEEDKANYATNVFSSIEQYCPGFTQDIVGY 188 (269)
Q Consensus 157 ~w~~~~K~~~a~~il~~le~~~P~i~~~I~~~ 188 (269)
.|+ .-.++|++|.+.+++.+|||..-|...
T Consensus 121 ~~~--~N~~fA~~l~~~~~~~yPgl~rgi~~k 150 (196)
T TIGR02867 121 HFE--KNLQLANKLHAKLEKKYPGLSRGIFYK 150 (196)
T ss_pred CHH--HHHHHHHHHHHHHHhhCCCcccceEEc
Confidence 463 667899999999999999998777553
No 135
>COG1574 Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=24.46 E-value=1.1e+02 Score=30.44 Aligned_cols=38 Identities=16% Similarity=0.253 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHC---C--CCCcceEEEEecChhHHHHhhC
Q psy895 164 ANYATNVFSSIEQYC---P--GFTQDIVGYEILTPPDLEKEFG 201 (269)
Q Consensus 164 ~~~a~~il~~le~~~---P--~i~~~I~~~~~~TP~t~~~y~~ 201 (269)
++-.+.+|+.+|+.. | +++.+|++..+.+|.+++|+-.
T Consensus 344 D~Av~~~LdafE~~~~~~~~~~~r~rieH~~~v~~~~i~R~~~ 386 (535)
T COG1574 344 DGAVDAALDAFEKARKKNGLKGLRHRIEHAELVSPDQIERFAK 386 (535)
T ss_pred hHHHHHHHHHHHHHhhhcCCccCCceeeeeeecCHhHHHHHHh
Confidence 566788899999975 3 8899999999999999999943
No 136
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=24.38 E-value=71 Score=32.20 Aligned_cols=37 Identities=22% Similarity=0.310 Sum_probs=27.8
Q ss_pred CCCCCCcEEEcCCCCCCCCCc-c-ch-HHHHHHHHHHHHhc
Q psy895 231 PFTLIPHLLLCGSGAHPGGGV-C-GA-PGYIAAQMVNRLMR 268 (269)
Q Consensus 231 ~~t~i~nLyl~G~~~~pG~Gv-~-gv-sg~~~a~~il~~~~ 268 (269)
.+|.++|+|.+||-+. |... . .+ .|+.||..|...+.
T Consensus 596 ~~Ts~~gVfA~GD~~~-g~~~vv~Ai~~Gr~AA~~i~~~l~ 635 (639)
T PRK12809 596 TQTHLKKVFAGGDAVH-GADLVVTAMAAGRQAARDMLTLFD 635 (639)
T ss_pred cccCCCCEEEcCCCCC-CchHHHHHHHHHHHHHHHHHHHHh
Confidence 4688999999999885 3443 2 23 89999999987653
No 137
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=24.31 E-value=84 Score=30.58 Aligned_cols=51 Identities=6% Similarity=-0.040 Sum_probs=36.3
Q ss_pred hhhhhHHHHHHhcCeeeeee---eeeeeceeeEEEecC---CC--ccCccCCCCCCCCCC
Q psy895 4 LSFLKDKEIEKKGGKRLRKI---TLVIRTRSIYCYECD---SW--KDRRCLDPFNYSVLP 55 (269)
Q Consensus 4 ~~~~~~~~i~~~gg~~~~~~---~~~~~~~~i~~~~~~---~~--~~~~~~~~fi~~~~p 55 (269)
|...|++..+++|++++.+. .++..+.++..+++. ++ ...+|+. +|.++-+
T Consensus 130 l~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~~~~~g~~~~i~a~~-VVnAaG~ 188 (516)
T TIGR03377 130 LVAANVLDAQEHGARIFTYTKVTGLIREGGRVTGVKVEDHKTGEEERIEAQV-VINAAGI 188 (516)
T ss_pred HHHHHHHHHHHcCCEEEcCcEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCE-EEECCCc
Confidence 45667889999999999884 555666777766653 33 3578888 7776555
No 138
>PF05265 DUF723: Protein of unknown function (DUF723); InterPro: IPR007929 This family contains several uncharacterised proteins from Neisseria meningitidis. These proteins may have a role in DNA binding.
Probab=23.98 E-value=47 Score=22.86 Aligned_cols=29 Identities=17% Similarity=0.131 Sum_probs=23.5
Q ss_pred HHHHHHHHHHCCCCCcceEEEEecChhHHH
Q psy895 168 TNVFSSIEQYCPGFTQDIVGYEILTPPDLE 197 (269)
Q Consensus 168 ~~il~~le~~~P~i~~~I~~~~~~TP~t~~ 197 (269)
+....++++.||+ -.-|++.-+.+|.|++
T Consensus 6 ~~~~~r~~e~Fp~-~slvef~g~~~PvtI~ 34 (60)
T PF05265_consen 6 ESAASRFEEKFPH-YSLVEFSGVATPVTIR 34 (60)
T ss_pred HHHHHHHHHHCCC-ceEEEEeCCCCceEEE
Confidence 4566778899999 5678888899999964
No 139
>PF07045 DUF1330: Protein of unknown function (DUF1330); InterPro: IPR010753 This family consists of several hypothetical bacterial proteins of around 90 residues in length. The function of this family is unknown.; PDB: 2FIU_B 3HHL_A 3DCA_D 3LO3_I.
Probab=23.95 E-value=69 Score=21.85 Aligned_cols=18 Identities=28% Similarity=0.307 Sum_probs=13.5
Q ss_pred hhhhHHHHHHhcCeeeee
Q psy895 5 SFLKDKEIEKKGGKRLRK 22 (269)
Q Consensus 5 ~~~~~~~i~~~gg~~~~~ 22 (269)
+......|+++||+++.+
T Consensus 8 ~~~~~~~l~~~GG~~l~~ 25 (65)
T PF07045_consen 8 REAVPPILEKYGGRVLAR 25 (65)
T ss_dssp HHHHHHHHHHTT-EEEEE
T ss_pred HHHHHHHHHHcCCEEEEE
Confidence 345667899999998887
No 140
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=23.34 E-value=79 Score=28.87 Aligned_cols=38 Identities=29% Similarity=0.323 Sum_probs=26.5
Q ss_pred CCCCCCCcEEEcCCCCCCCC--Cccch-HHHHHHHHHHHHh
Q psy895 230 SPFTLIPHLLLCGSGAHPGG--GVCGA-PGYIAAQMVNRLM 267 (269)
Q Consensus 230 ~~~t~i~nLyl~G~~~~pG~--Gv~gv-sg~~~a~~il~~~ 267 (269)
..+|.+||+|-+||-+.... -+.++ .|..||..+.+.+
T Consensus 260 ~~~TsvpGifAaGDv~~~~~rqi~ta~~~G~~Aa~~a~~~l 300 (305)
T COG0492 260 EMETSVPGIFAAGDVADKNGRQIATAAGDGAIAALSAERYL 300 (305)
T ss_pred CcccCCCCEEEeEeeccCcccEEeehhhhHHHHHHHHHHHh
Confidence 47899999999999997422 22333 6777777666554
No 141
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=23.33 E-value=70 Score=32.23 Aligned_cols=14 Identities=29% Similarity=0.449 Sum_probs=12.0
Q ss_pred CCCCCcEEEcCCCC
Q psy895 232 FTLIPHLLLCGSGA 245 (269)
Q Consensus 232 ~t~i~nLyl~G~~~ 245 (269)
+|+|+|||-+|..+
T Consensus 402 ~t~IpGLYAaGE~a 415 (626)
T PRK07803 402 AATVPGLFAAGECA 415 (626)
T ss_pred eeecCCeeEccccc
Confidence 57899999999764
No 142
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=22.76 E-value=75 Score=32.66 Aligned_cols=35 Identities=26% Similarity=0.378 Sum_probs=27.0
Q ss_pred CCCCCcEEEcCCCCCCCCC-cc-ch-HHHHHHHHHHHHh
Q psy895 232 FTLIPHLLLCGSGAHPGGG-VC-GA-PGYIAAQMVNRLM 267 (269)
Q Consensus 232 ~t~i~nLyl~G~~~~pG~G-v~-gv-sg~~~a~~il~~~ 267 (269)
+|.++|+|.+||.+. |.. +. .+ .|+.||..|.+.+
T Consensus 712 ~Ts~~gVfA~GD~~~-g~~~vv~Av~~G~~AA~~I~~~L 749 (752)
T PRK12778 712 QSSIPGIYAGGDIVR-GGATVILAMGDGKRAAAAIDEYL 749 (752)
T ss_pred CCCCCCEEEeCCccC-CcHHHHHHHHHHHHHHHHHHHHh
Confidence 677999999999985 332 22 23 8999999998876
No 143
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=22.50 E-value=1e+02 Score=31.21 Aligned_cols=36 Identities=17% Similarity=0.254 Sum_probs=26.7
Q ss_pred CCCCCCcEEEcCCCCCCCCCc--cch-HHHHHHHHHHHHh
Q psy895 231 PFTLIPHLLLCGSGAHPGGGV--CGA-PGYIAAQMVNRLM 267 (269)
Q Consensus 231 ~~t~i~nLyl~G~~~~pG~Gv--~gv-sg~~~a~~il~~~ 267 (269)
.+|.++|+|.+||.+. |... ..+ .|+.||..|...+
T Consensus 462 ~~Ts~pgVfA~GDv~~-g~~~v~~Ai~~G~~AA~~I~~~L 500 (652)
T PRK12814 462 LQTSVAGVFAGGDCVT-GADIAINAVEQGKRAAHAIDLFL 500 (652)
T ss_pred CcCCCCCEEEcCCcCC-CchHHHHHHHHHHHHHHHHHHHH
Confidence 4677999999999985 3332 223 7999999987765
No 144
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=22.40 E-value=6.4e+02 Score=25.10 Aligned_cols=50 Identities=12% Similarity=0.145 Sum_probs=36.8
Q ss_pred hhhhHHHHHHhcCeeeeee---eeeeeceeeEEEecCCCc-----cCccCCCCCCCCCCC
Q psy895 5 SFLKDKEIEKKGGKRLRKI---TLVIRTRSIYCYECDSWK-----DRRCLDPFNYSVLPI 56 (269)
Q Consensus 5 ~~~~~~~i~~~gg~~~~~~---~~~~~~~~i~~~~~~~~~-----~~~~~~~fi~~~~p~ 56 (269)
.-+.++.-.++|++++++. .+..++. +..++|.+.+ +.+++. +|+++-|+
T Consensus 167 v~~~a~~A~~~Ga~il~~~~v~~~~re~~-v~gV~~~D~~tg~~~~ira~~-VVNAaGpW 224 (532)
T COG0578 167 VAANARDAAEHGAEILTYTRVESLRREGG-VWGVEVEDRETGETYEIRARA-VVNAAGPW 224 (532)
T ss_pred HHHHHHHHHhcccchhhcceeeeeeecCC-EEEEEEEecCCCcEEEEEcCE-EEECCCcc
Confidence 3456777889999999995 5555555 7778777655 578888 88887775
No 145
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=22.22 E-value=75 Score=34.08 Aligned_cols=36 Identities=19% Similarity=0.210 Sum_probs=26.6
Q ss_pred CCCCCCcEEEcCCCCCCCCC-cc-ch-HHHHHHHHHHHHh
Q psy895 231 PFTLIPHLLLCGSGAHPGGG-VC-GA-PGYIAAQMVNRLM 267 (269)
Q Consensus 231 ~~t~i~nLyl~G~~~~pG~G-v~-gv-sg~~~a~~il~~~ 267 (269)
.+|.++|+|.+||.+. |.+ +. .+ .|+.||..|+++.
T Consensus 801 ~~Ts~pgVFAaGD~a~-GP~tVv~AIaqGr~AA~nIl~~~ 839 (1012)
T TIGR03315 801 GETNITNVFVIGDANR-GPATIVEAIADGRKAANAILSRE 839 (1012)
T ss_pred CccCCCCEEEEeCcCC-CccHHHHHHHHHHHHHHHHhccc
Confidence 4677999999999885 232 32 23 8999999998653
No 146
>PRK10597 DNA damage-inducible protein I; Provisional
Probab=21.80 E-value=1.8e+02 Score=21.20 Aligned_cols=30 Identities=10% Similarity=-0.053 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHCCCCCcceEEEEec
Q psy895 162 DKANYATNVFSSIEQYCPGFTQDIVGYEIL 191 (269)
Q Consensus 162 ~K~~~a~~il~~le~~~P~i~~~I~~~~~~ 191 (269)
..+.+.+.|..+|.+.||+...+|.....+
T Consensus 17 a~~AL~~EL~kRl~~~fPd~~~~v~Vr~~s 46 (81)
T PRK10597 17 AIDALAGELSRRIQYAFPDNEGHVSVRYAA 46 (81)
T ss_pred HHHHHHHHHHHHHHhhCCCCCccEEEeecC
Confidence 556788888999999999998777766543
No 147
>PRK14976 5'-3' exonuclease; Provisional
Probab=21.54 E-value=71 Score=28.83 Aligned_cols=30 Identities=23% Similarity=0.112 Sum_probs=20.6
Q ss_pred EEEcCCCCCCCCCccchHHHHHHHHHHHHhc
Q psy895 238 LLLCGSGAHPGGGVCGAPGYIAAQMVNRLMR 268 (269)
Q Consensus 238 Lyl~G~~~~pG~Gv~gvsg~~~a~~il~~~~ 268 (269)
+-|+||++---.||+|+ |-.+|..++++++
T Consensus 183 ~aL~GD~sDnipGVpGI-G~KtA~~LL~~~g 212 (281)
T PRK14976 183 KGLVGDSSDNIKGVKGI-GPKTAIKLLNKYG 212 (281)
T ss_pred HHHhCCccCCCCCCCcc-cHHHHHHHHHHcC
Confidence 44789777533589988 6667777776654
No 148
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=21.44 E-value=78 Score=30.83 Aligned_cols=35 Identities=6% Similarity=-0.052 Sum_probs=25.2
Q ss_pred hhhhhHHHHHHhcCeeeeee---eeeeeceeeEEEecC
Q psy895 4 LSFLKDKEIEKKGGKRLRKI---TLVIRTRSIYCYECD 38 (269)
Q Consensus 4 ~~~~~~~~i~~~gg~~~~~~---~~~~~~~~i~~~~~~ 38 (269)
+...|.+.+++.|.+++.+. .++.++.+|..+...
T Consensus 192 l~~~L~~~~~~~gv~i~~~t~v~~l~~~~g~V~Gv~~~ 229 (506)
T PRK06481 192 LVDGLLKNVQERKIPLFVNADVTKITEKDGKVTGVKVK 229 (506)
T ss_pred HHHHHHHHHHHcCCeEEeCCeeEEEEecCCEEEEEEEE
Confidence 44567888999999998885 555555667766653
No 149
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=21.44 E-value=2.5e+02 Score=25.51 Aligned_cols=47 Identities=11% Similarity=0.013 Sum_probs=32.4
Q ss_pred hhhhhHHHHHHhcCeeeee-eee-eeece-eeEEEecCCCccCccCCCCCCC
Q psy895 4 LSFLKDKEIEKKGGKRLRK-ITL-VIRTR-SIYCYECDSWKDRRCLDPFNYS 52 (269)
Q Consensus 4 ~~~~~~~~i~~~gg~~~~~-~~~-~~~~~-~i~~~~~~~~~~~~~~~~fi~~ 52 (269)
+.+.|.+.+++.|+..+.. ... ..... .+..+.+++++ .+++. +|..
T Consensus 158 ~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~v~t~~g~-i~a~~-vv~a 207 (387)
T COG0665 158 LTRALAAAAEELGVVIIEGGTPVTSLERDGRVVGVETDGGT-IEADK-VVLA 207 (387)
T ss_pred HHHHHHHHHHhcCCeEEEccceEEEEEecCcEEEEEeCCcc-EEeCE-EEEc
Confidence 4578899999999776554 321 12221 67899999988 88888 4444
No 150
>COG2921 Uncharacterized conserved protein [Function unknown]
Probab=21.20 E-value=1.3e+02 Score=22.46 Aligned_cols=29 Identities=10% Similarity=0.124 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHCCCCC-cceEEEE
Q psy895 161 EDKANYATNVFSSIEQYCPGFT-QDIVGYE 189 (269)
Q Consensus 161 ~~K~~~a~~il~~le~~~P~i~-~~I~~~~ 189 (269)
...+++++++++.+.++.|++- .+|.+..
T Consensus 23 ~a~~~l~~~vv~vvqr~ap~~~~~~~~~k~ 52 (90)
T COG2921 23 AAGPELEDQVVEVVQRHAPGDYTPRVSWKP 52 (90)
T ss_pred ccchhHHHHHHHHHHHHCCcccCceeeecc
Confidence 3567899999999999999984 6664443
No 151
>PTZ00188 adrenodoxin reductase; Provisional
Probab=21.00 E-value=86 Score=30.89 Aligned_cols=33 Identities=12% Similarity=0.107 Sum_probs=26.4
Q ss_pred CCCcEEEcCCCCCCCC-Cccch---HHHHHHHHHHHHh
Q psy895 234 LIPHLLLCGSGAHPGG-GVCGA---PGYIAAQMVNRLM 267 (269)
Q Consensus 234 ~i~nLyl~G~~~~pG~-Gv~gv---sg~~~a~~il~~~ 267 (269)
+++|+|.+| |+--|. |+.|. -+..|++.|+.|+
T Consensus 403 ~~~g~Y~~G-WiKrGP~GvIgtn~~da~~t~~~v~~d~ 439 (506)
T PTZ00188 403 HKFAIFKAG-WFDKGPKGNIASQILNSKNSTHLVLNFL 439 (506)
T ss_pred CCCCcEEee-ecCcCCCceeccCcccHHHHHHHHHHHH
Confidence 368999888 776666 88774 5999999999885
No 152
>PF07454 SpoIIP: Stage II sporulation protein P (SpoIIP); InterPro: IPR010897 This family contains the bacterial stage II sporulation protein P (SpoIIP) (approximately 350 residues long). It has been shown that a block in polar cytokinesis in Bacillus subtilis is mediated partly by transcription of spoIID, spoIIM and spoIIP. This inhibition of polar division is involved in the locking in of asymmetry after the formation of a polar septum during sporulation []. SpoIIP is one of the three genes (spoIID, spoIIM and spoIIP, [, , ]), under the control of sigma E, that have been shown to be essential for the engulfment of the forespore by the mother cell. Their products are involved in degradation of the septal peptidoglycan and mutations in spoIID, spoIIM or spoIIP block sporulation at morphological stage II, prior to the stage of engulfment. These three genes are absolutely conserved (sometimes even duplicated) in all endospore formers [].
Probab=20.74 E-value=2.7e+02 Score=25.04 Aligned_cols=31 Identities=19% Similarity=0.574 Sum_probs=25.7
Q ss_pred CCcHHHHHHHHHHHHHHHHHHCCCCCcceEEEE
Q psy895 157 DWTEEDKANYATNVFSSIEQYCPGFTQDIVGYE 189 (269)
Q Consensus 157 ~w~~~~K~~~a~~il~~le~~~P~i~~~I~~~~ 189 (269)
.|+ .-.++|.+|.+.+++.+|||..-|....
T Consensus 199 ~~~--~N~~fA~~l~~~~~~~yPGl~rgI~~k~ 229 (268)
T PF07454_consen 199 NWE--KNLAFAKQLHAKLEKKYPGLSRGIFVKD 229 (268)
T ss_pred CHH--HHHHHHHHHHHHHHhHCCCccceeeecC
Confidence 464 5678999999999999999988776554
No 153
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=20.65 E-value=88 Score=30.80 Aligned_cols=32 Identities=6% Similarity=-0.024 Sum_probs=21.4
Q ss_pred hhhHHHHHH---h-cCeeeeee---eeeeeceeeEEEec
Q psy895 6 FLKDKEIEK---K-GGKRLRKI---TLVIRTRSIYCYEC 37 (269)
Q Consensus 6 ~~~~~~i~~---~-gg~~~~~~---~~~~~~~~i~~~~~ 37 (269)
..|.+.+++ . |.+++.+. +++.++.+|..|.+
T Consensus 152 ~~l~~~~~~~~~~~gv~i~~~t~~~~Li~~~g~V~Gv~~ 190 (549)
T PRK12834 152 EPFERRVREAAARGLVRFRFRHRVDELVVTDGAVTGVRG 190 (549)
T ss_pred HHHHHHHHHHHHhCCceEEecCEeeEEEEeCCEEEEEEE
Confidence 344555542 3 47888884 66777778999886
No 154
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=20.55 E-value=73 Score=30.07 Aligned_cols=47 Identities=6% Similarity=-0.064 Sum_probs=29.1
Q ss_pred hhhhHHHHHHhcCeeeeeeeeee-eceeeEEEecCCC-ccCccCCCCCCCC
Q psy895 5 SFLKDKEIEKKGGKRLRKITLVI-RTRSIYCYECDSW-KDRRCLDPFNYSV 53 (269)
Q Consensus 5 ~~~~~~~i~~~gg~~~~~~~~~~-~~~~i~~~~~~~~-~~~~~~~~fi~~~ 53 (269)
-+.|.+.+++.|.+++.+.++.- ++.. ..+.+.++ ..++|+. +|-++
T Consensus 89 v~~L~~~l~~~gV~i~~~~~V~~i~~~~-~~v~~~~~~~~~~a~~-vIlAt 137 (376)
T TIGR03862 89 LRAWLKRLAEQGVQFHTRHRWIGWQGGT-LRFETPDGQSTIEADA-VVLAL 137 (376)
T ss_pred HHHHHHHHHHCCCEEEeCCEEEEEeCCc-EEEEECCCceEEecCE-EEEcC
Confidence 46788899999999998864321 2222 34454322 3477777 66553
No 155
>PF14123 DUF4290: Domain of unknown function (DUF4290)
Probab=20.54 E-value=1.1e+02 Score=25.66 Aligned_cols=25 Identities=12% Similarity=0.239 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCcce
Q psy895 161 EDKANYATNVFSSIEQYCPGFTQDI 185 (269)
Q Consensus 161 ~~K~~~a~~il~~le~~~P~i~~~I 185 (269)
+.+.+.|+.|++.+.+.+|.+|+.=
T Consensus 33 eeR~~~A~~II~iM~~l~P~lRd~~ 57 (176)
T PF14123_consen 33 EERNRCAETIIEIMGNLNPHLRDVP 57 (176)
T ss_pred HHHHHHHHHHHHHHHhcCCccCCCh
Confidence 5788999999999999999998753
No 156
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=20.19 E-value=92 Score=33.44 Aligned_cols=38 Identities=16% Similarity=0.072 Sum_probs=27.5
Q ss_pred CCCCCCcEEEcCCCCC-CCCCccch-HHHHHHHHHHHHhc
Q psy895 231 PFTLIPHLLLCGSGAH-PGGGVCGA-PGYIAAQMVNRLMR 268 (269)
Q Consensus 231 ~~t~i~nLyl~G~~~~-pG~Gv~gv-sg~~~a~~il~~~~ 268 (269)
.+|.++|+|.+||.+. |+..+..+ .|+.||..|++.++
T Consensus 803 lqTs~pgVFAaGD~a~Gp~tvv~Ai~qGr~AA~nI~~~~~ 842 (1019)
T PRK09853 803 GETSLTNVYMIGDVQRGPSTIVAAIADARRAADAILSREG 842 (1019)
T ss_pred cccCCCCEEEEeccccCchHHHHHHHHHHHHHHHHhhhcC
Confidence 4677999999999985 32122223 89999999988653
No 157
>PRK06116 glutathione reductase; Validated
Probab=20.09 E-value=93 Score=29.55 Aligned_cols=34 Identities=12% Similarity=0.078 Sum_probs=24.5
Q ss_pred CCCCCCcEEEcCCCCCCCCCcc--ch-HHHHHHHHHHH
Q psy895 231 PFTLIPHLLLCGSGAHPGGGVC--GA-PGYIAAQMVNR 265 (269)
Q Consensus 231 ~~t~i~nLyl~G~~~~pG~Gv~--gv-sg~~~a~~il~ 265 (269)
.+|.+||+|.+||.+.. .... .+ .|+.+|+.|++
T Consensus 291 ~~Ts~~~IyA~GD~~~~-~~~~~~A~~~g~~aa~~i~g 327 (450)
T PRK06116 291 QNTNVPGIYAVGDVTGR-VELTPVAIAAGRRLSERLFN 327 (450)
T ss_pred CCcCCCCEEEEeecCCC-cCcHHHHHHHHHHHHHHHhC
Confidence 47789999999998842 2221 12 78888888875
No 158
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=20.07 E-value=35 Score=32.49 Aligned_cols=47 Identities=15% Similarity=0.092 Sum_probs=0.0
Q ss_pred hhhhHHHHHHhcCeeeeee---eeeeeceeeEEEecCC---CccCccCCCCCCC
Q psy895 5 SFLKDKEIEKKGGKRLRKI---TLVIRTRSIYCYECDS---WKDRRCLDPFNYS 52 (269)
Q Consensus 5 ~~~~~~~i~~~gg~~~~~~---~~~~~~~~i~~~~~~~---~~~~~~~~~fi~~ 52 (269)
...|.+.+++.|.+|+.+. .++.++.+|..|.+.+ ....+|+. ||-.
T Consensus 93 ~~~l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g~~~i~A~~-~IDa 145 (428)
T PF12831_consen 93 KAVLDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVETKSGRKEIRAKV-FIDA 145 (428)
T ss_dssp ------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence 3456677788999999995 6677888899999986 67777887 6655
Done!