Query psy895
Match_columns 269
No_of_seqs 242 out of 1520
Neff 7.6
Searched_HMMs 29240
Date Fri Aug 16 23:44:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy895.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/895hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dgk_A Phytoene dehydrogenase; 100.0 2.1E-43 7E-48 336.5 14.4 248 3-268 222-492 (501)
2 3ka7_A Oxidoreductase; structu 99.8 1.2E-18 4.2E-23 161.8 14.8 217 3-265 197-425 (425)
3 3nrn_A Uncharacterized protein 99.6 2.9E-15 1E-19 139.3 14.6 205 3-263 190-403 (421)
4 1b37_A Protein (polyamine oxid 99.2 4.8E-12 1.6E-16 119.6 1.2 227 4-268 208-459 (472)
5 1s3e_A Amine oxidase [flavin-c 99.1 2.1E-11 7.2E-16 116.5 4.0 216 14-268 224-455 (520)
6 2yg5_A Putrescine oxidase; oxi 99.1 5.4E-11 1.9E-15 111.2 5.5 213 13-268 223-452 (453)
7 2ivd_A PPO, PPOX, protoporphyr 99.1 1.1E-11 3.7E-16 116.8 0.7 214 15-268 248-474 (478)
8 2jae_A L-amino acid oxidase; o 99.0 1.7E-10 5.9E-15 109.0 5.4 225 4-268 241-486 (489)
9 2bcg_G Secretory pathway GDP d 98.9 1.2E-08 4.2E-13 96.0 12.1 183 3-265 243-439 (453)
10 1d5t_A Guanine nucleotide diss 98.7 1.8E-08 6.2E-13 94.4 7.7 118 3-150 235-361 (433)
11 1sez_A Protoporphyrinogen oxid 98.6 2.4E-09 8.3E-14 101.4 -0.6 210 17-268 256-494 (504)
12 3qj4_A Renalase; FAD/NAD(P)-bi 98.5 3.4E-07 1.1E-11 82.3 9.8 206 14-266 121-341 (342)
13 3nks_A Protoporphyrinogen oxid 98.5 3.1E-08 1.1E-12 92.9 2.6 229 3-266 235-473 (477)
14 2iid_A L-amino-acid oxidase; f 98.3 1.2E-07 4.2E-12 89.5 1.0 224 4-268 243-485 (498)
15 3i6d_A Protoporphyrinogen oxid 98.2 3.7E-07 1.3E-11 84.9 2.4 219 7-267 236-468 (470)
16 2vvm_A Monoamine oxidase N; FA 98.0 6E-06 2.1E-10 77.8 5.6 220 3-268 256-486 (495)
17 3lov_A Protoporphyrinogen oxid 98.0 4.9E-06 1.7E-10 77.9 4.5 217 7-268 237-466 (475)
18 4dsg_A UDP-galactopyranose mut 97.1 0.00021 7.1E-09 67.7 2.8 151 4-181 218-380 (484)
19 3k7m_X 6-hydroxy-L-nicotine ox 96.9 0.01 3.5E-07 54.3 12.3 207 7-266 208-425 (431)
20 4gde_A UDP-galactopyranose mut 96.9 0.00011 3.7E-09 69.1 -1.3 165 3-189 223-414 (513)
21 1vg0_A RAB proteins geranylger 96.8 0.004 1.4E-07 61.2 8.9 118 2-146 378-508 (650)
22 1yvv_A Amine oxidase, flavin-c 96.6 0.021 7.2E-07 50.1 11.9 207 8-269 112-329 (336)
23 2b9w_A Putative aminooxidase; 96.2 0.0024 8.2E-08 58.5 3.4 29 234-264 392-423 (424)
24 3kkj_A Amine oxidase, flavin-c 93.2 0.043 1.5E-06 44.6 2.7 37 231-268 290-328 (336)
25 2z3y_A Lysine-specific histone 92.8 0.092 3.1E-06 51.4 4.8 37 232-268 619-659 (662)
26 1rsg_A FMS1 protein; FAD bindi 92.6 0.045 1.5E-06 51.6 2.2 35 234-268 470-508 (516)
27 2xag_A Lysine-specific histone 92.6 0.047 1.6E-06 55.3 2.4 38 231-268 789-830 (852)
28 3ayj_A Pro-enzyme of L-phenyla 92.2 1.7 5.9E-05 43.0 13.1 35 234-268 643-680 (721)
29 3p1w_A Rabgdi protein; GDI RAB 87.3 0.23 7.8E-06 46.9 2.1 52 3-55 257-312 (475)
30 2e1m_C L-glutamate oxidase; L- 86.1 0.16 5.4E-06 41.5 0.3 37 232-268 114-153 (181)
31 2cul_A Glucose-inhibited divis 75.6 1.6 5.4E-05 36.3 2.8 35 232-268 195-232 (232)
32 3nlc_A Uncharacterized protein 74.4 1.8 6E-05 41.5 3.1 48 4-52 222-272 (549)
33 3fpz_A Thiazole biosynthetic e 69.7 1.6 5.6E-05 38.0 1.6 37 231-267 279-324 (326)
34 3g5s_A Methylenetetrahydrofola 67.3 2.6 8.9E-05 39.1 2.4 35 230-265 322-363 (443)
35 3f8d_A Thioredoxin reductase ( 66.9 3 0.0001 35.4 2.7 37 231-267 275-316 (323)
36 2zxi_A TRNA uridine 5-carboxym 66.9 5.2 0.00018 39.0 4.6 50 4-54 125-177 (637)
37 3fbs_A Oxidoreductase; structu 66.1 3.5 0.00012 34.6 2.9 37 231-267 253-291 (297)
38 2q0l_A TRXR, thioredoxin reduc 65.6 4.6 0.00016 34.4 3.6 39 231-269 269-310 (311)
39 3itj_A Thioredoxin reductase 1 65.6 3.1 0.00011 35.7 2.5 38 231-268 295-335 (338)
40 3ces_A MNMG, tRNA uridine 5-ca 65.5 12 0.00042 36.5 6.9 50 4-54 126-178 (651)
41 4gut_A Lysine-specific histone 62.0 2.3 8E-05 42.4 1.1 222 7-265 535-775 (776)
42 4a5l_A Thioredoxin reductase; 61.8 8.4 0.00029 32.7 4.6 38 230-267 271-311 (314)
43 2oln_A NIKD protein; flavoprot 60.7 14 0.0005 32.5 6.1 42 4-47 155-199 (397)
44 3cp8_A TRNA uridine 5-carboxym 58.5 17 0.00057 35.5 6.4 49 3-52 118-169 (641)
45 4gcm_A TRXR, thioredoxin reduc 58.1 10 0.00036 32.2 4.5 38 230-267 265-305 (312)
46 3cty_A Thioredoxin reductase; 57.4 11 0.00039 32.0 4.7 38 231-268 276-316 (319)
47 3r9u_A Thioredoxin reductase; 56.0 5.1 0.00017 33.9 2.1 37 231-267 272-311 (315)
48 3dje_A Fructosyl amine: oxygen 55.8 7.7 0.00026 34.9 3.4 48 4-52 163-216 (438)
49 2q7v_A Thioredoxin reductase; 55.4 7 0.00024 33.5 3.0 37 231-267 272-311 (325)
50 4a9w_A Monooxygenase; baeyer-v 53.3 11 0.00037 32.3 3.9 38 231-268 310-352 (357)
51 4fk1_A Putative thioredoxin re 53.0 4.8 0.00017 34.4 1.5 38 230-267 259-299 (304)
52 1fl2_A Alkyl hydroperoxide red 52.9 11 0.00037 31.9 3.8 37 231-267 265-304 (310)
53 3lxd_A FAD-dependent pyridine 52.7 9.6 0.00033 34.3 3.5 49 4-53 196-247 (415)
54 3fg2_P Putative rubredoxin red 51.2 11 0.00038 33.7 3.7 49 4-53 186-237 (404)
55 1vdc_A NTR, NADPH dependent th 51.2 5.8 0.0002 34.1 1.7 36 232-267 284-322 (333)
56 1trb_A Thioredoxin reductase; 51.0 11 0.00037 32.0 3.4 37 232-268 275-314 (320)
57 3lzw_A Ferredoxin--NADP reduct 50.8 11 0.00037 32.1 3.4 38 231-268 273-315 (332)
58 3nlc_A Uncharacterized protein 50.7 12 0.00042 35.6 4.0 38 230-267 502-542 (549)
59 3dje_A Fructosyl amine: oxygen 50.5 25 0.00084 31.5 5.9 30 235-266 353-384 (438)
60 2zbw_A Thioredoxin reductase; 48.1 17 0.00057 31.1 4.2 37 231-267 275-316 (335)
61 3ab1_A Ferredoxin--NADP reduct 46.3 13 0.00044 32.4 3.2 37 231-267 286-327 (360)
62 2gf3_A MSOX, monomeric sarcosi 46.3 27 0.00093 30.4 5.4 42 4-47 152-196 (389)
63 1chu_A Protein (L-aspartate ox 45.7 9.3 0.00032 36.1 2.3 37 230-266 362-409 (540)
64 2gjc_A Thiazole biosynthetic e 44.7 18 0.00062 32.0 3.9 34 234-268 282-325 (326)
65 1qo8_A Flavocytochrome C3 fuma 42.8 13 0.00044 35.1 2.8 34 233-269 519-565 (566)
66 2i0z_A NAD(FAD)-utilizing dehy 42.1 15 0.00052 33.4 3.1 49 4-53 136-187 (447)
67 2ywl_A Thioredoxin reductase r 42.0 17 0.0006 28.0 3.1 38 230-267 130-170 (180)
68 1d4d_A Flavocytochrome C fumar 41.8 9.5 0.00032 36.2 1.7 35 232-269 524-571 (572)
69 1gpe_A Protein (glucose oxidas 41.3 63 0.0022 30.6 7.5 34 235-268 545-584 (587)
70 1y56_B Sarcosine oxidase; dehy 40.3 17 0.0006 31.7 3.1 43 4-47 151-196 (382)
71 3dme_A Conserved exported prot 37.4 14 0.00048 31.8 2.0 48 4-52 152-204 (369)
72 2a87_A TRXR, TR, thioredoxin r 37.3 24 0.00081 30.3 3.5 36 232-267 277-315 (335)
73 2i0z_A NAD(FAD)-utilizing dehy 35.8 31 0.0011 31.3 4.2 33 234-267 403-443 (447)
74 2gqf_A Hypothetical protein HI 35.7 16 0.00055 33.0 2.1 46 5-53 112-164 (401)
75 1y0p_A Fumarate reductase flav 35.5 14 0.00047 35.0 1.7 34 233-269 524-570 (571)
76 2cul_A Glucose-inhibited divis 34.7 27 0.00091 28.5 3.2 48 4-52 70-120 (232)
77 2gag_B Heterotetrameric sarcos 34.6 23 0.00078 31.1 3.0 43 4-47 176-221 (405)
78 1kf6_A Fumarate reductase flav 34.3 18 0.00063 34.6 2.4 48 4-52 136-192 (602)
79 3nyc_A D-arginine dehydrogenas 34.3 24 0.00081 30.5 3.0 46 4-52 156-204 (381)
80 1hyu_A AHPF, alkyl hydroperoxi 34.0 31 0.0011 32.1 3.9 38 230-267 475-515 (521)
81 3axb_A Putative oxidoreductase 33.0 28 0.00095 31.3 3.3 47 4-52 183-249 (448)
82 3oz2_A Digeranylgeranylglycero 32.7 22 0.00075 30.7 2.5 31 235-265 276-313 (397)
83 1ryi_A Glycine oxidase; flavop 32.1 41 0.0014 29.1 4.2 46 4-52 166-214 (382)
84 2vdc_G Glutamate synthase [NAD 31.7 28 0.00097 32.0 3.2 36 231-267 405-443 (456)
85 3h8l_A NADH oxidase; membrane 31.3 24 0.00083 31.3 2.6 37 231-267 294-335 (409)
86 3h28_A Sulfide-quinone reducta 30.5 35 0.0012 30.6 3.6 37 231-267 281-332 (430)
87 1y56_B Sarcosine oxidase; dehy 30.4 49 0.0017 28.7 4.4 30 235-266 324-355 (382)
88 3v76_A Flavoprotein; structura 29.4 18 0.00062 32.9 1.4 36 228-263 374-417 (417)
89 2bs2_A Quinol-fumarate reducta 28.6 27 0.00091 34.0 2.5 33 232-266 382-427 (660)
90 3q9t_A Choline dehydrogenase a 27.5 1.3E+02 0.0044 28.5 7.1 89 178-268 474-574 (577)
91 1jnr_A Adenylylsulfate reducta 26.6 39 0.0013 32.5 3.2 43 5-47 154-209 (643)
92 1pj5_A N,N-dimethylglycine oxi 26.2 40 0.0014 33.4 3.3 47 4-52 153-202 (830)
93 3dgh_A TRXR-1, thioredoxin red 25.5 45 0.0016 30.4 3.4 37 230-266 313-352 (483)
94 3jsk_A Cypbp37 protein; octame 25.3 29 0.00098 31.0 1.9 34 235-268 293-335 (344)
95 1q1r_A Putidaredoxin reductase 24.6 49 0.0017 29.8 3.4 48 4-52 193-245 (431)
96 2l42_A DNA-binding protein RAP 24.4 28 0.00095 25.5 1.3 19 6-24 33-51 (106)
97 1lqt_A FPRA; NADP+ derivative, 24.3 31 0.0011 31.6 2.0 35 233-267 349-386 (456)
98 3da1_A Glycerol-3-phosphate de 24.2 31 0.0011 32.6 2.0 48 4-52 172-227 (561)
99 3ef6_A Toluene 1,2-dioxygenase 23.8 38 0.0013 30.2 2.5 48 4-53 187-237 (410)
100 3qvp_A Glucose oxidase; oxidor 23.5 2.3E+02 0.0079 26.8 8.0 34 235-268 541-580 (583)
101 3lad_A Dihydrolipoamide dehydr 23.2 44 0.0015 30.4 2.8 36 230-266 305-343 (476)
102 3ps9_A TRNA 5-methylaminomethy 23.2 50 0.0017 31.7 3.3 43 4-47 419-464 (676)
103 1i8t_A UDP-galactopyranose mut 23.2 53 0.0018 28.9 3.2 31 235-265 332-365 (367)
104 3klj_A NAD(FAD)-dependent dehy 22.7 22 0.00074 31.9 0.5 37 230-266 252-294 (385)
105 3urh_A Dihydrolipoyl dehydroge 22.6 37 0.0013 31.1 2.2 36 230-266 325-363 (491)
106 2jtv_A Protein of unknown func 22.5 40 0.0014 22.1 1.6 15 4-18 5-19 (65)
107 3g3e_A D-amino-acid oxidase; F 22.3 25 0.00087 30.3 0.9 32 235-268 302-335 (351)
108 3dgz_A Thioredoxin reductase 2 22.1 46 0.0016 30.5 2.7 37 230-266 313-352 (488)
109 3l8k_A Dihydrolipoyl dehydroge 21.9 39 0.0013 30.8 2.1 36 230-266 295-333 (466)
110 3sx6_A Sulfide-quinone reducta 21.9 43 0.0015 30.1 2.4 37 231-267 292-343 (437)
111 2rgh_A Alpha-glycerophosphate 21.6 74 0.0025 30.0 4.1 50 5-55 191-248 (571)
112 4dna_A Probable glutathione re 21.4 48 0.0016 30.1 2.6 39 231-269 294-334 (463)
113 3gyx_A Adenylylsulfate reducta 21.4 71 0.0024 31.0 4.0 43 5-47 169-224 (662)
114 1y56_A Hypothetical protein PH 21.0 51 0.0017 30.4 2.7 35 234-268 342-377 (493)
115 2h88_A Succinate dehydrogenase 21.0 24 0.00083 34.0 0.5 32 233-266 387-431 (621)
116 3qfa_A Thioredoxin reductase 1 20.7 48 0.0016 30.8 2.5 37 230-266 341-380 (519)
117 1ryi_A Glycine oxidase; flavop 20.6 35 0.0012 29.6 1.5 30 235-266 331-362 (382)
118 3pl8_A Pyranose 2-oxidase; sub 20.6 71 0.0024 30.6 3.8 38 232-269 571-615 (623)
119 1dxl_A Dihydrolipoamide dehydr 20.6 62 0.0021 29.2 3.2 34 231-265 305-341 (470)
120 3pc7_A DNA ligase 3; DNA repai 20.5 39 0.0013 24.0 1.4 30 6-39 32-61 (88)
121 2bi7_A UDP-galactopyranose mut 20.3 40 0.0014 30.0 1.9 33 235-267 335-370 (384)
122 3iwa_A FAD-dependent pyridine 20.2 57 0.002 29.6 2.9 48 4-53 204-254 (472)
123 3ic9_A Dihydrolipoamide dehydr 20.2 57 0.0019 30.0 2.9 36 230-265 300-337 (492)
124 3o0h_A Glutathione reductase; 20.1 50 0.0017 30.2 2.5 38 232-269 315-354 (484)
No 1
>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}
Probab=100.00 E-value=2.1e-43 Score=336.51 Aligned_cols=248 Identities=19% Similarity=0.274 Sum_probs=167.4
Q ss_pred hhhhhhHHHHHHhcCeeeeee---eeeeeceeeEEEecCCCccCccCCCCCCCCCCCCCCCcccccccccccccCcccch
Q psy895 3 LLSFLKDKEIEKKGGKRLRKI---TLVIRTRSIYCYECDSWKDRRCLDPFNYSVLPIHQPALNPCNGCCVKMVRNSKTEF 79 (269)
Q Consensus 3 ~~~~~~~~~i~~~gg~~~~~~---~~~~~~~~i~~~~~~~~~~~~~~~~fi~~~~p~~~~~~~~~~~~~~~Ll~~~~~~~ 79 (269)
-|.+.|.+.|+++||+|..++ +|+.++.+++.|++++++.+.|+. +|+++.| ..+ ..+|+++...+.
T Consensus 222 ~l~~aL~~~~~~~Gg~I~~~~~V~~I~~~~~~~~gV~~~~g~~~~ad~-VV~~a~~-----~~~----~~~Ll~~~~~~~ 291 (501)
T 4dgk_A 222 ALVQGMIKLFQDLGGEVVLNARVSHMETTGNKIEAVHLEDGRRFLTQA-VASNADV-----VHT----YRDLLSQHPAAV 291 (501)
T ss_dssp HHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTSCEEECSC-EEECCC-------------------------
T ss_pred chHHHHHHHHHHhCCceeeecceeEEEeeCCeEEEEEecCCcEEEcCE-EEECCCH-----HHH----HHHhccccccch
Confidence 477899999999999999885 888999999999999999999999 9999888 344 235778777777
Q ss_pred hhhhhhccCCCCCceEEEEe--ecccCCCCCcceEee---------------eCCCCeEEEEcCCCCCCCCCCCCeeEEE
Q psy895 80 ESVRRTCTSKLDISLFMVDH--VCMYEGSGRGHMCFC---------------ESDRPMIEMVLPSSLDNTLSPPGHHVCL 142 (269)
Q Consensus 80 ~~~~r~~~~~~s~s~f~vyl--~~~~~~~~~~~i~~~---------------~~~~p~~~v~~ps~~Dp~~AP~G~~~l~ 142 (269)
.+.+++++.+.+.|+|++|+ +...+.+.||++++. ++++|.+++++|+..||++||+|+++++
T Consensus 292 ~~~~~~~~~~~~~s~~~~~~~l~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~dp~~ap~G~~~~~ 371 (501)
T 4dgk_A 292 KQSNKLQTKRMSNSLFVLYFGLNHHHDQLAHHTVCFGPRYRELIDEIFNHDGLAEDFSLYLHAPCVTDSSLAPEGCGSYY 371 (501)
T ss_dssp -----------CCEEEEEEEEESSCCTTSCSEEEEEECC-------------CCCEEEEEEECGGGTCGGGSSTTCEEEE
T ss_pred hhhhhhhccccCCceeEEEecccCCccccccceeccccchhhhccccccccccccCCceecccCCCCCCCcCCCCCceEE
Confidence 78889999999999999999 777778888887642 3567889999999999999999999999
Q ss_pred EEEecccccCCCCCCCcHHHHHHHHHHHHHHHHHH-CCCCCcceEEEEecChhHHHHhhCCCCCccccccccccccccCC
Q psy895 143 LFTQFTPYKLAGDRDWTEEDKANYATNVFSSIEQY-CPGFTQDIVGYEILTPPDLEKEFGLTGGNIFHGALSLNQLLFNR 221 (269)
Q Consensus 143 i~~~~~p~~~~~g~~w~~~~K~~~a~~il~~le~~-~P~i~~~I~~~~~~TP~t~~~y~~~~~GsiyG~~~~~~q~~~~r 221 (269)
++++ +|+....+.+|+ +.|+++++++++.||++ +|+|+++|+..++.||+||++|++.++|++||++++..|..++|
T Consensus 372 ~~~~-~p~~~~~~~~~~-~~~~~~~~~vl~~l~~~~~P~~~~~i~~~~~~tP~~~~~~~~~~~G~~~g~~~~~~q~~~~R 449 (501)
T 4dgk_A 372 VLAP-VPHLGTANLDWT-VEGPKLRDRIFAYLEQHYMPGLRSQLVTHRMFTPFDFRDQLNAYHGSAFSVEPVLTQSAWFR 449 (501)
T ss_dssp EEEE-ECCTTTSCCCHH-HHHHHHHHHHHHHHHHHTCTTHHHHEEEEEEECTTTTC------------------------
T ss_pred EEEe-cCccccccccHH-HHHHHHHHHHHHHHHHhhCCChHHceEEEEECCHHHHHHHcCCCCccccChhcchhhccccC
Confidence 9998 888645566787 68999999999999986 59999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCcEEEcCCCCCCCCCccch--HHHHHHHHHHHHhc
Q psy895 222 PLPIQGPSSPFTLIPHLLLCGSGAHPGGGVCGA--PGYIAAQMVNRLMR 268 (269)
Q Consensus 222 p~~~~~~~~~~t~i~nLyl~G~~~~pG~Gv~gv--sg~~~a~~il~~~~ 268 (269)
|. ...|||+|||||||+++||+||+|+ ||++||++||+|+.
T Consensus 450 P~------~~~t~i~gLyl~G~~t~pG~Gv~ga~~SG~~aA~~il~dL~ 492 (501)
T 4dgk_A 450 PH------NRDKTITNLYLVGAGTHPGAGIPGVIGSAKATAGLMLEDLI 492 (501)
T ss_dssp ------------CCTTEEECCCH------HHHHHHHHHHHHHHHHHHHC
T ss_pred CC------CCCCCCCCEEEECCCCCCcccHHHHHHHHHHHHHHHHHHhc
Confidence 82 3468999999999999999999995 99999999999985
No 2
>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}
Probab=99.79 E-value=1.2e-18 Score=161.77 Aligned_cols=217 Identities=12% Similarity=0.039 Sum_probs=148.7
Q ss_pred hhhhhhHHHHHHhcCeeeeee---eeeeeceeeEEEecCCCccCccCCCCCCCCCCCCCCCcccccccccccccC-ccc-
Q psy895 3 LLSFLKDKEIEKKGGKRLRKI---TLVIRTRSIYCYECDSWKDRRCLDPFNYSVLPIHQPALNPCNGCCVKMVRN-SKT- 77 (269)
Q Consensus 3 ~~~~~~~~~i~~~gg~~~~~~---~~~~~~~~i~~~~~~~~~~~~~~~~fi~~~~p~~~~~~~~~~~~~~~Ll~~-~~~- 77 (269)
-|...|.+.++++|++|..+. +++.++.+++.+.++ ++..+|+. +|.++.+ ..+ .+|++. ..+
T Consensus 197 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~gv~~~-g~~~~ad~-VV~a~~~-----~~~-----~~ll~~~~~~~ 264 (425)
T 3ka7_A 197 GIIDALETVISANGGKIHTGQEVSKILIENGKAAGIIAD-DRIHDADL-VISNLGH-----AAT-----AVLCSEALSKE 264 (425)
T ss_dssp HHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEET-TEEEECSE-EEECSCH-----HHH-----HHHTTTTCCTT
T ss_pred HHHHHHHHHHHHcCCEEEECCceeEEEEECCEEEEEEEC-CEEEECCE-EEECCCH-----HHH-----HHhcCCccccc
Confidence 367789999999999999884 677777788888886 67889999 9999776 333 567753 334
Q ss_pred -chhhhhhhccCCCCCceEEEEe--ecccCCCCCcceEeeeCCCCeEEEEcCCCCCCCCCCCCeeEEEEEEecccccCCC
Q psy895 78 -EFESVRRTCTSKLDISLFMVDH--VCMYEGSGRGHMCFCESDRPMIEMVLPSSLDNTLSPPGHHVCLLFTQFTPYKLAG 154 (269)
Q Consensus 78 -~~~~~~r~~~~~~s~s~f~vyl--~~~~~~~~~~~i~~~~~~~p~~~v~~ps~~Dp~~AP~G~~~l~i~~~~~p~~~~~ 154 (269)
+..+.+++++++++ +.+++++ ++.+ ..|+.+++.....+...+..+|..||++||+|++.+++..+ .+++
T Consensus 265 ~~~~~~~~~~~~~~~-~~~~v~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~s~~~p~~ap~G~~~l~~~~~-~~~~--- 337 (425)
T 3ka7_A 265 ADAAYFKMVGTLQPS-AGIKICLAADEPL--VGHTGVLLTPYTRRINGVNEVTQADPELAPPGKHLTMCHQY-VAPE--- 337 (425)
T ss_dssp TTHHHHHHHHHCCCB-EEEEEEEEESSCS--SCSSSEEECCSSSSEEEEECGGGTCGGGSCTTCEEEEEEEE-ECGG---
T ss_pred CCHHHHHHhhCcCCC-ceEEEEeecCCCc--cCcCEEEECCChhhcceEEeccCCCCCcCCCCCeEEEEEec-cccc---
Confidence 67777888888876 4578888 4433 35666665333345667889999999999999998887654 3221
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHCCCCCcceEEEEecChhHHHHhhCCCCCccccccccccccccCCCCCCCCCCCCCCC
Q psy895 155 DRDWTEEDKANYATNVFSSIEQYCPGFTQDIVGYEILTPPDLEKEFGLTGGNIFHGALSLNQLLFNRPLPIQGPSSPFTL 234 (269)
Q Consensus 155 g~~w~~~~K~~~a~~il~~le~~~P~i~~~I~~~~~~TP~t~~~y~~~~~GsiyG~~~~~~q~~~~rp~~~~~~~~~~t~ 234 (269)
+. +..++..+++++.|++.+|+++..+..+. +| .+++--+... ...+| ..+||
T Consensus 338 ---~~-~~~~~~~~~~~~~l~~~~p~~~~~~~~v~--------~~----~~~~P~~~~~----~~~~~-------~~~~p 390 (425)
T 3ka7_A 338 ---NV-KNLESEIEMGLEDLKEIFPGKRYEVLLIQ--------SY----HDEWPVNRAA----SGTDP-------GNETP 390 (425)
T ss_dssp ---GG-GGHHHHHHHHHHHHHHHSTTCCEEEEEEE--------EE----BTTBCSBSSC----TTCCC-------CSBCS
T ss_pred ---cc-cchHHHHHHHHHHHHHhCCCCceEEEEEE--------EE----CCCccccccc----cCCCC-------CCCCC
Confidence 11 12245569999999999999643333222 12 1121111000 12334 78899
Q ss_pred CCcEEEcCCCCCC--CCCccch--HHHHHHHHHHH
Q psy895 235 IPHLLLCGSGAHP--GGGVCGA--PGYIAAQMVNR 265 (269)
Q Consensus 235 i~nLyl~G~~~~p--G~Gv~gv--sg~~~a~~il~ 265 (269)
++|||+||+++.+ |.||+++ ||+.+|++|++
T Consensus 391 ~~gL~laG~~~~~~gg~gv~~~~~s~~~~~~~i~~ 425 (425)
T 3ka7_A 391 FSGLYVVGDGAKGKGGIEVEGVALGVMSVMEKVLG 425 (425)
T ss_dssp SBTEEECSTTSCCTTCCHHHHHHHHHHHHHHC---
T ss_pred cCCeEEeCCccCCCCCCccHHHHHHHHHHHHHhhC
Confidence 9999999999998 4466664 99999999875
No 3
>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}
Probab=99.63 E-value=2.9e-15 Score=139.33 Aligned_cols=205 Identities=13% Similarity=0.095 Sum_probs=139.9
Q ss_pred hhhhhhHHHHHHhcCeeeeee---eeeeeceeeEEEecCCCccCccCCCCCCCCCCCCCCCcccccccccccccCcccch
Q psy895 3 LLSFLKDKEIEKKGGKRLRKI---TLVIRTRSIYCYECDSWKDRRCLDPFNYSVLPIHQPALNPCNGCCVKMVRNSKTEF 79 (269)
Q Consensus 3 ~~~~~~~~~i~~~gg~~~~~~---~~~~~~~~i~~~~~~~~~~~~~~~~fi~~~~p~~~~~~~~~~~~~~~Ll~~~~~~~ 79 (269)
-|...|.+.++++|+++..+. +++.++.++ +. .+++..+|+. +|.++.+ ..+ .+|++.+.++.
T Consensus 190 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~v--V~-~~g~~~~ad~-Vv~a~~~-----~~~-----~~ll~~~~~~~ 255 (421)
T 3nrn_A 190 AVIDELERIIMENKGKILTRKEVVEINIEEKKV--YT-RDNEEYSFDV-AISNVGV-----RET-----VKLIGRDYFDR 255 (421)
T ss_dssp HHHHHHHHHHHTTTCEEESSCCEEEEETTTTEE--EE-TTCCEEECSE-EEECSCH-----HHH-----HHHHCGGGSCH
T ss_pred HHHHHHHHHHHHCCCEEEcCCeEEEEEEECCEE--EE-eCCcEEEeCE-EEECCCH-----HHH-----HHhcCcccCCH
Confidence 366788999999999999885 555666666 54 4567889999 9998776 333 56887555666
Q ss_pred hhhhhhccCCCCCceEEEEe--ecccCCCCCcceEeeeCCCCeEEEEcCCCCCCCCCCCCeeEEEEEEecccccCCCCCC
Q psy895 80 ESVRRTCTSKLDISLFMVDH--VCMYEGSGRGHMCFCESDRPMIEMVLPSSLDNTLSPPGHHVCLLFTQFTPYKLAGDRD 157 (269)
Q Consensus 80 ~~~~r~~~~~~s~s~f~vyl--~~~~~~~~~~~i~~~~~~~p~~~v~~ps~~Dp~~AP~G~~~l~i~~~~~p~~~~~g~~ 157 (269)
.+.+++++++++ +.+.+++ +.. .+.++++++. ++.....++.++..||++||+|++.+++.++ ++..
T Consensus 256 ~~~~~~~~~~~~-~~~~v~l~~~~~--~~~~~~~~~~-~~~~~~~i~~~s~~~p~~ap~G~~~~~~~~~-~~~~------ 324 (421)
T 3nrn_A 256 DYLKQVDSIEPS-EGIKFNLAVPGE--PRIGNTIVFT-PGLMINGFNEPSALDKSLAREGYTLIMAHMA-LKNG------ 324 (421)
T ss_dssp HHHHHHHTCCCC-CEEEEEEEEESS--CSSCSSEEEC-TTSSSCEEECGGGTCGGGSCTTEEEEEEEEE-CTTC------
T ss_pred HHHHHHhCCCCC-ceEEEEEEEcCC--cccCCeEEEc-CCcceeeEeccCCCCCCcCCCCceEEEEEEe-eccc------
Confidence 777888999988 8899998 443 3556777653 2222446788999999999999999988776 5431
Q ss_pred CcHHHHHHHHHHHHHHHHHHCCCCCcceEEEEecChhHHHHhhCCCCCccccccccccccccCCCCCCCCCCCCCCCCCc
Q psy895 158 WTEEDKANYATNVFSSIEQYCPGFTQDIVGYEILTPPDLEKEFGLTGGNIFHGALSLNQLLFNRPLPIQGPSSPFTLIPH 237 (269)
Q Consensus 158 w~~~~K~~~a~~il~~le~~~P~i~~~I~~~~~~TP~t~~~y~~~~~GsiyG~~~~~~q~~~~rp~~~~~~~~~~t~i~n 237 (269)
. .+ +..+.+++.|++.+| ...+..... |.. ++...- .....++ + .++ +|
T Consensus 325 ~---~~-~~~~~~~~~L~~~~p--~~~~~~~~~--------~~~-------~~p~~~-~~~~~~~-------~-~~~-~g 373 (421)
T 3nrn_A 325 N---VK-KAIEKGWEELLEIFP--EGEPLLAQV--------YRD-------GNPVNR-TRAGLHI-------E-WPL-NE 373 (421)
T ss_dssp C---HH-HHHHHHHHHHHHHCT--TCEEEEEEE--------C---------------------CC-------C-CCC-SS
T ss_pred c---HH-HHHHHHHHHHHHHcC--CCeEEEeee--------ccC-------CCCccc-ccCCCCC-------C-CCC-Cc
Confidence 1 11 347899999999999 222222222 211 111110 0000112 4 678 99
Q ss_pred EEEcCCCCCCCCCc--cch--HHHHHHHHH
Q psy895 238 LLLCGSGAHPGGGV--CGA--PGYIAAQMV 263 (269)
Q Consensus 238 Lyl~G~~~~pG~Gv--~gv--sg~~~a~~i 263 (269)
||+|||++.+++|+ .|+ ||+.||++|
T Consensus 374 l~laGd~~~~~~g~~~~ga~~sg~~aA~~l 403 (421)
T 3nrn_A 374 VLVVGDGYRPPGGIEVDGIALGVMKALEKL 403 (421)
T ss_dssp EEECSTTCCCTTCCHHHHHHHHHHHHHHHT
T ss_pred EEEECCcccCCCceeeehHHHHHHHHHHHh
Confidence 99999999987688 664 999999998
No 4
>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*
Probab=99.16 E-value=4.8e-12 Score=119.57 Aligned_cols=227 Identities=9% Similarity=0.014 Sum_probs=130.5
Q ss_pred hhhhhHHHHHHh--------cCeeeeee---eeeeeceeeEEEecCCCccCccCCCCCCCCCCCCCCCccccccccccc-
Q psy895 4 LSFLKDKEIEKK--------GGKRLRKI---TLVIRTRSIYCYECDSWKDRRCLDPFNYSVLPIHQPALNPCNGCCVKM- 71 (269)
Q Consensus 4 ~~~~~~~~i~~~--------gg~~~~~~---~~~~~~~~i~~~~~~~~~~~~~~~~fi~~~~p~~~~~~~~~~~~~~~L- 71 (269)
|...|.+.+++. |++|..+. ++...+..+. +.|++++.++|+. +|.++.+ .++ .++
T Consensus 208 l~~~l~~~l~~~~~~~~~i~~~~i~~~~~V~~i~~~~~~v~-v~~~~g~~~~ad~-vI~a~~~-----~~l-----~~~~ 275 (472)
T 1b37_A 208 VVYYLAGQYLKTDDKSGKIVDPRLQLNKVVREIKYSPGGVT-VKTEDNSVYSADY-VMVSASL-----GVL-----QSDL 275 (472)
T ss_dssp HHHHHHHTTSCBCTTTCCBCCTTEESSCCEEEEEECSSCEE-EEETTSCEEEESE-EEECSCH-----HHH-----HTTS
T ss_pred HHHHHHHhccccccccccccccEEEcCCEEEEEEEcCCcEE-EEECCCCEEEcCE-EEEecCH-----HHh-----ccCC
Confidence 334455555544 66777664 5556666665 8899998999999 9999766 222 222
Q ss_pred cc-CcccchhhhhhhccCCCCCceEEEEe--eccc-CCCCCcceEeeeCCC---CeEEEEcCCCCCCCCCCCCeeEEEEE
Q psy895 72 VR-NSKTEFESVRRTCTSKLDISLFMVDH--VCMY-EGSGRGHMCFCESDR---PMIEMVLPSSLDNTLSPPGHHVCLLF 144 (269)
Q Consensus 72 l~-~~~~~~~~~~r~~~~~~s~s~f~vyl--~~~~-~~~~~~~i~~~~~~~---p~~~v~~ps~~Dp~~AP~G~~~l~i~ 144 (269)
+. ...+++...+.++++.++ +...+++ +..+ +.-....++...+.+ ..++.. .|++ .| |.+++.++
T Consensus 276 ~~~~p~Lp~~~~~ai~~~~~~-~~~kv~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~p-~~~~l~~~ 348 (472)
T 1b37_A 276 IQFKPKLPTWKVRAIYQFDMA-VYTKIFLKFPRKFWPEGKGREFFLYASSRRGYYGVWQE----FEKQ-YP-DANVLLVT 348 (472)
T ss_dssp SEEESCCCHHHHHHHHHSEEE-CEEEEEEECSSCCSCCSTTCSEEEECCSSTTSSCEEEE----CTTT-ST-TCCEEEEE
T ss_pred eeECCCCCHHHHHHHHhcCCc-ceeEEEEECCCcCCCCCCCcceEEecccCCccceeeec----ccCC-CC-CCCEEEEE
Confidence 22 344566667778877654 3445555 4432 221111222111111 123322 2333 33 55666665
Q ss_pred EecccccCCCCCCCcHHHHHHHHHHHHHHHHHHCCCCC--cceEEEEecChhHHHHhhCCCCCccccccccccccccCCC
Q psy895 145 TQFTPYKLAGDRDWTEEDKANYATNVFSSIEQYCPGFT--QDIVGYEILTPPDLEKEFGLTGGNIFHGALSLNQLLFNRP 222 (269)
Q Consensus 145 ~~~~p~~~~~g~~w~~~~K~~~a~~il~~le~~~P~i~--~~I~~~~~~TP~t~~~y~~~~~GsiyG~~~~~~q~~~~rp 222 (269)
+. .+.. ..|+..-++++.+.+++.|++.+|++. +.+ ...+.++.+.+ | ..|+.-++... +....++
T Consensus 349 ~~-~~~a----~~~~~~~~~e~~~~~l~~L~~~~Pg~~~~~~~-~~~~~~W~~~~-~---~~G~~~~~~~g--~~~~~~~ 416 (472)
T 1b37_A 349 VT-DEES----RRIEQQSDEQTKAEIMQVLRKMFPGKDVPDAT-DILVPRWWSDR-F---YKGTFSNWPVG--VNRYEYD 416 (472)
T ss_dssp EE-HHHH----HHHHTSCHHHHHHHHHHHHHHHCTTSCCCCCS-EEECCCTTTCT-T---TSSSEEECBTT--CCHHHHH
T ss_pred ec-hHHH----HHHHhCCHHHHHHHHHHHHHHHcCCCCCCCCc-eEEecccCCCC-C---CCcccCCCCCC--CChhHHH
Confidence 43 2110 013211367899999999999999863 444 44566666532 2 24443222111 1100122
Q ss_pred CCCCCCCCCCCCCCcEEEcCCCCCC--CCCccch--HHHHHHHHHHHHhc
Q psy895 223 LPIQGPSSPFTLIPHLLLCGSGAHP--GGGVCGA--PGYIAAQMVNRLMR 268 (269)
Q Consensus 223 ~~~~~~~~~~t~i~nLyl~G~~~~p--G~Gv~gv--sg~~~a~~il~~~~ 268 (269)
..++|++||||+|+++++ ++++.|+ ||+.||++|+++++
T Consensus 417 -------~l~~p~~~l~fAG~~t~~~~~g~v~GA~~SG~~aA~~i~~~l~ 459 (472)
T 1b37_A 417 -------QLRAPVGRVYFTGEHTSEHYNGYVHGAYLSGIDSAEILINCAQ 459 (472)
T ss_dssp -------HHHCCBTTEEECSGGGCTTTTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred -------HHhccCCcEEEeecccCCCCCCchhHHHHHHHHHHHHHHHHHH
Confidence 457889999999999987 4578886 99999999998764
No 5
>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...
Probab=99.12 E-value=2.1e-11 Score=116.48 Aligned_cols=216 Identities=13% Similarity=0.050 Sum_probs=124.8
Q ss_pred HhcCeeeeee---eeeeeceeeEEEecCCCccCccCCCCCCCCCCCCCCCcccccccccccccCcccchhhhhhhccCCC
Q psy895 14 KKGGKRLRKI---TLVIRTRSIYCYECDSWKDRRCLDPFNYSVLPIHQPALNPCNGCCVKMVRNSKTEFESVRRTCTSKL 90 (269)
Q Consensus 14 ~~gg~~~~~~---~~~~~~~~i~~~~~~~~~~~~~~~~fi~~~~p~~~~~~~~~~~~~~~Ll~~~~~~~~~~~r~~~~~~ 90 (269)
+.|++|..+. +|+.++.++. +.|++++.+.|+. +|.++.+ .+. .+|+.+..++....+.++++.+
T Consensus 224 ~lg~~i~~~~~V~~i~~~~~~v~-v~~~~g~~~~ad~-VI~a~p~-----~~l-----~~l~~~p~lp~~~~~~i~~~~~ 291 (520)
T 1s3e_A 224 LLGDRVKLERPVIYIDQTRENVL-VETLNHEMYEAKY-VISAIPP-----TLG-----MKIHFNPPLPMMRNQMITRVPL 291 (520)
T ss_dssp HHGGGEESSCCEEEEECSSSSEE-EEETTSCEEEESE-EEECSCG-----GGG-----GGSEEESCCCHHHHHHTTSCCB
T ss_pred HcCCcEEcCCeeEEEEECCCeEE-EEECCCeEEEeCE-EEECCCH-----HHH-----cceeeCCCCCHHHHHHHHhCCC
Confidence 3488887774 5555555665 8899999999999 9999776 222 3455444566677777888776
Q ss_pred CCceEEEEe--eccc-CCCCC-cceEeeeCCCCeEEEEcCCCCCCCCCCCCeeEEEEEEecccccCCCCCCCcHHHHHHH
Q psy895 91 DISLFMVDH--VCMY-EGSGR-GHMCFCESDRPMIEMVLPSSLDNTLSPPGHHVCLLFTQFTPYKLAGDRDWTEEDKANY 166 (269)
Q Consensus 91 s~s~f~vyl--~~~~-~~~~~-~~i~~~~~~~p~~~v~~ps~~Dp~~AP~G~~~l~i~~~~~p~~~~~g~~w~~~~K~~~ 166 (269)
+ +.+.+++ +..+ +.... ..++...++.|..++. |++..+.++..+..++...+.+ .|.+.-++++
T Consensus 292 ~-~~~kv~l~~~~~~w~~~~~~g~~~~~~~~~~~~~~~-----d~~~~~~~~~~l~~~~~~~~a~-----~~~~~~~~e~ 360 (520)
T 1s3e_A 292 G-SVIKCIVYYKEPFWRKKDYCGTMIIDGEEAPVAYTL-----DDTKPEGNYAAIMGFILAHKAR-----KLARLTKEER 360 (520)
T ss_dssp C-CEEEEEEECSSCGGGGGTEEEEEEECSTTCSCSEEE-----ECCCTTSCSCEEEEEEETHHHH-----HHTTSCHHHH
T ss_pred c-ceEEEEEEeCCCcccCCCCCceeeccCCCCceEEEe-----eCCCCCCCCCEEEEEccchhhh-----hhhcCCHHHH
Confidence 4 5556666 4433 32211 1111111223332322 3333333345565554311111 2332235778
Q ss_pred HHHHHHHHHHHCCCCCcceEEEEecChhHHHHhhC----CCCCccccccccccccccCCCCCCCCCCCCCCCCCcEEEcC
Q psy895 167 ATNVFSSIEQYCPGFTQDIVGYEILTPPDLEKEFG----LTGGNIFHGALSLNQLLFNRPLPIQGPSSPFTLIPHLLLCG 242 (269)
Q Consensus 167 a~~il~~le~~~P~i~~~I~~~~~~TP~t~~~y~~----~~~GsiyG~~~~~~q~~~~rp~~~~~~~~~~t~i~nLyl~G 242 (269)
.+.+++.|++.+|.- ++.+|.+++.+.. ...|+..++.. +.+...+++ ..++|++||||+|
T Consensus 361 ~~~vl~~L~~~~~~~-------~~~~p~~~~~~~W~~~~~~~G~~~~~~~-~g~~~~~~~-------~l~~p~~~L~fAG 425 (520)
T 1s3e_A 361 LKKLCELYAKVLGSL-------EALEPVHYEEKNWCEEQYSGGCYTTYFP-PGILTQYGR-------VLRQPVDRIYFAG 425 (520)
T ss_dssp HHHHHHHHHHHHTCG-------GGGCCSEEEEEEGGGCTTTCSSSCBCCC-TTHHHHHGG-------GTTCCBTTEEECS
T ss_pred HHHHHHHHHHHhCcc-------ccCCccEEEEEeeCCCCCCCCCCccccC-CCccccchH-------HHhCCCCCEEEee
Confidence 899999999998752 1345665544321 23455432211 111111233 4577899999999
Q ss_pred CCC---CCCCCccch--HHHHHHHHHHHHhc
Q psy895 243 SGA---HPGGGVCGA--PGYIAAQMVNRLMR 268 (269)
Q Consensus 243 ~~~---~pG~Gv~gv--sg~~~a~~il~~~~ 268 (269)
+++ ++| ++.|+ ||..+|++|++.++
T Consensus 426 ~~t~~~~~g-~v~GAi~SG~~aA~~i~~~l~ 455 (520)
T 1s3e_A 426 TETATHWSG-YMEGAVEAGERAAREILHAMG 455 (520)
T ss_dssp GGGCSSSTT-SHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhcCcCcE-EhHHHHHHHHHHHHHHHHHHh
Confidence 987 453 78885 99999999998875
No 6
>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*
Probab=99.10 E-value=5.4e-11 Score=111.20 Aligned_cols=213 Identities=14% Similarity=0.041 Sum_probs=119.3
Q ss_pred HHhcCeeeeee---eeeeeceeeEEEecCCCccCccCCCCCCCCCCCCCCCcccccccccccccCcccchhhhhhhccCC
Q psy895 13 EKKGGKRLRKI---TLVIRTRSIYCYECDSWKDRRCLDPFNYSVLPIHQPALNPCNGCCVKMVRNSKTEFESVRRTCTSK 89 (269)
Q Consensus 13 ~~~gg~~~~~~---~~~~~~~~i~~~~~~~~~~~~~~~~fi~~~~p~~~~~~~~~~~~~~~Ll~~~~~~~~~~~r~~~~~ 89 (269)
++.|++|..+. +|..++.....+.+ +++.++|+. +|.++.+ .+. .+|+....++....+.++++.
T Consensus 223 ~~lg~~i~~~~~V~~i~~~~~~~v~v~~-~~~~~~ad~-VI~a~p~-----~~~-----~~l~~~p~lp~~~~~~i~~~~ 290 (453)
T 2yg5_A 223 EALGDDVFLNAPVRTVKWNESGATVLAD-GDIRVEASR-VILAVPP-----NLY-----SRISYDPPLPRRQHQMHQHQS 290 (453)
T ss_dssp HHHGGGEECSCCEEEEEEETTEEEEEET-TTEEEEEEE-EEECSCG-----GGG-----GGSEEESCCCHHHHHHGGGEE
T ss_pred HhcCCcEEcCCceEEEEEeCCceEEEEE-CCeEEEcCE-EEEcCCH-----HHH-----hcCEeCCCCCHHHHHHHhcCC
Confidence 34588888774 55555555133677 567889999 9999766 222 345544456666667777776
Q ss_pred CCCceEEEEe--eccc-CCCC-CcceEeeeCCCCeEEEEcCCCCCCCCCCCC-eeEEEEEEecccccCCCCCCCcHHHHH
Q psy895 90 LDISLFMVDH--VCMY-EGSG-RGHMCFCESDRPMIEMVLPSSLDNTLSPPG-HHVCLLFTQFTPYKLAGDRDWTEEDKA 164 (269)
Q Consensus 90 ~s~s~f~vyl--~~~~-~~~~-~~~i~~~~~~~p~~~v~~ps~~Dp~~AP~G-~~~l~i~~~~~p~~~~~g~~w~~~~K~ 164 (269)
.+ +.+.+++ +..+ +... ...+. .++.|..++. |++ +|+| +..+..++. .+.. ..|.+.-++
T Consensus 291 ~~-~~~kv~l~~~~~~w~~~~~~g~~~--~~~~~~~~~~-----~~~-~~~~~~~~l~~~~~-~~~~----~~~~~~~~~ 356 (453)
T 2yg5_A 291 LG-LVIKVHAVYETPFWREDGLSGTGF--GASEVVQEVY-----DNT-NHEDDRGTLVAFVS-DEKA----DAMFELSAE 356 (453)
T ss_dssp EC-CEEEEEEEESSCGGGGGTEEEEEE--CTTSSSCEEE-----ECC-CTTCSSEEEEEEEE-HHHH----HHHHHSCHH
T ss_pred Cc-ceEEEEEEECCCCCCCCCCCceee--cCCCCeEEEE-----eCC-CCCCCCCEEEEEec-cHHH----HHHhcCCHH
Confidence 64 4566666 4432 2211 11111 1333432322 222 3444 345555543 2211 124322357
Q ss_pred HHHHHHHHHHHHHCCCCCcceEEEEecChhHHHHhhC----CCCCccccccccccccccCCCCCCCCCCCCCCCCCcEEE
Q psy895 165 NYATNVFSSIEQYCPGFTQDIVGYEILTPPDLEKEFG----LTGGNIFHGALSLNQLLFNRPLPIQGPSSPFTLIPHLLL 240 (269)
Q Consensus 165 ~~a~~il~~le~~~P~i~~~I~~~~~~TP~t~~~y~~----~~~GsiyG~~~~~~q~~~~rp~~~~~~~~~~t~i~nLyl 240 (269)
++.+.+++.|++.+|. ++.+|.++..... ...|+..+. ..+.+...+++ ..++|++||||
T Consensus 357 ~~~~~~l~~L~~~~~~--------~~~~p~~~~~~~W~~~~~~~G~~~~~-~~~g~~~~~~~-------~~~~p~~~l~~ 420 (453)
T 2yg5_A 357 ERKATILASLARYLGP--------KAEEPVVYYESDWGSEEWTRGCYAAS-FDLGGLHRYGA-------DSRTPVGPIHF 420 (453)
T ss_dssp HHHHHHHHHHHHHHCG--------GGGCCSEEEECCTTTCTTTCSSSCEE-ECTTHHHHHGG-------GTTCCBTTEEE
T ss_pred HHHHHHHHHHHHHhCc--------cCCCccEEEEeecCCCCCCCCCCcCc-CCCCccccchH-------HHhCCcCceEE
Confidence 7889999999998874 2345655432211 234543211 11111111223 46788999999
Q ss_pred cCCCCC---CCCCccch--HHHHHHHHHHHHhc
Q psy895 241 CGSGAH---PGGGVCGA--PGYIAAQMVNRLMR 268 (269)
Q Consensus 241 ~G~~~~---pG~Gv~gv--sg~~~a~~il~~~~ 268 (269)
+|+++. +| ++.|+ ||+.+|++|+++++
T Consensus 421 aG~~~~~~~~g-~v~gA~~SG~~aA~~i~~~l~ 452 (453)
T 2yg5_A 421 SCSDIAAEGYQ-HVDGAVRMGQRTAADIIARSK 452 (453)
T ss_dssp CCGGGCSTTTT-SHHHHHHHHHHHHHHHHHHC-
T ss_pred eeccccccccc-chHHHHHHHHHHHHHHHHHhc
Confidence 999874 43 68885 99999999998865
No 7
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*
Probab=99.10 E-value=1.1e-11 Score=116.76 Aligned_cols=214 Identities=11% Similarity=0.003 Sum_probs=123.0
Q ss_pred hcCeeeeee---eeeeeceeeEEEec---CCCccCccCCCCCCCCCCCCCCCcccccccccccccCcccchhhhhhhccC
Q psy895 15 KGGKRLRKI---TLVIRTRSIYCYEC---DSWKDRRCLDPFNYSVLPIHQPALNPCNGCCVKMVRNSKTEFESVRRTCTS 88 (269)
Q Consensus 15 ~gg~~~~~~---~~~~~~~~i~~~~~---~~~~~~~~~~~fi~~~~p~~~~~~~~~~~~~~~Ll~~~~~~~~~~~r~~~~ 88 (269)
.|++|..+. .+..++.+ ..+.+ .+++..+|+. +|.++.+ .+. .+|+++ +++...+.++++
T Consensus 248 lg~~i~~~~~V~~i~~~~~~-~~v~~~~~~~g~~~~ad~-vV~a~~~-----~~~-----~~ll~~--l~~~~~~~l~~~ 313 (478)
T 2ivd_A 248 LGDAAHVGARVEGLAREDGG-WRLIIEEHGRRAELSVAQ-VVLAAPA-----HAT-----AKLLRP--LDDALAALVAGI 313 (478)
T ss_dssp HGGGEESSEEEEEEECC--C-CEEEEEETTEEEEEECSE-EEECSCH-----HHH-----HHHHTT--TCHHHHHHHHTC
T ss_pred hhhhEEcCCEEEEEEecCCe-EEEEEeecCCCceEEcCE-EEECCCH-----HHH-----HHHhhc--cCHHHHHHHhcC
Confidence 378887775 44444444 34565 6777889999 9999765 222 456642 556666778888
Q ss_pred CCCCceEEEEe--eccc-CCCCCcceEee-eCCCCeEEEEcCCCCCCCCCCCCeeEEEEEEecccccCCCCCCCcHHHHH
Q psy895 89 KLDISLFMVDH--VCMY-EGSGRGHMCFC-ESDRPMIEMVLPSSLDNTLSPPGHHVCLLFTQFTPYKLAGDRDWTEEDKA 164 (269)
Q Consensus 89 ~~s~s~f~vyl--~~~~-~~~~~~~i~~~-~~~~p~~~v~~ps~~Dp~~AP~G~~~l~i~~~~~p~~~~~g~~w~~~~K~ 164 (269)
+++ +.+.+++ +..+ +......+... .++.+...+..++..+|.++|+|+..+++++. .++. ..|.+..++
T Consensus 314 ~~~-~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~p~g~~~l~~~~~-~~~~----~~~~~~~~~ 387 (478)
T 2ivd_A 314 AYA-PIAVVHLGFDAGTLPAPDGFGFLVPAEEQRRMLGAIHASTTFPFRAEGGRVLYSCMVG-GARQ----PGLVEQDED 387 (478)
T ss_dssp CBC-CEEEEEEEECTTSSCCCCSSEEECCGGGCCSCCEEEEHHHHCGGGBSTTCEEEEEEEE-CTTC----GGGGGSCHH
T ss_pred CCC-cEEEEEEEEccccCCCCCceEEEecCCCCCceEEEEEEcccCCCcCCCCCEEEEEEeC-CcCC----ccccCCCHH
Confidence 875 6777777 5443 32111112110 01234444555555577788999888877754 2221 123333567
Q ss_pred HHHHHHHHHHHHHCCCCCcceEEEEecChhHHHHhhCCCCCc-cccccccccccccCCCCCCCCCCCCCCCCCcEEEcCC
Q psy895 165 NYATNVFSSIEQYCPGFTQDIVGYEILTPPDLEKEFGLTGGN-IFHGALSLNQLLFNRPLPIQGPSSPFTLIPHLLLCGS 243 (269)
Q Consensus 165 ~~a~~il~~le~~~P~i~~~I~~~~~~TP~t~~~y~~~~~Gs-iyG~~~~~~q~~~~rp~~~~~~~~~~t~i~nLyl~G~ 243 (269)
++.+.+++.|++.+|... . |.++.. ..-.++. .|+...... ...+++ ..++ ++||||+|+
T Consensus 388 ~~~~~~~~~l~~~~~~~~-~--------p~~~~~-~~w~~~~p~~~~g~~~~-~~~~~~-------~~~~-~~~l~~aG~ 448 (478)
T 2ivd_A 388 ALAALAREELKALAGVTA-R--------PSFTRV-FRWPLGIPQYNLGHLER-VAAIDA-------ALQR-LPGLHLIGN 448 (478)
T ss_dssp HHHHHHHHHHHHHHCCCS-C--------CSEEEE-EEESSCCBCCBTTHHHH-HHHHHH-------HHHT-STTEEECST
T ss_pred HHHHHHHHHHHHHhCCCC-C--------CcEEEE-EECCCcccCCCcCHHHH-HHHHHH-------HHhh-CCCEEEEcc
Confidence 899999999999998753 2 222110 1111111 233222110 000111 1122 789999999
Q ss_pred CCCCCCCccch--HHHHHHHHHHHHhc
Q psy895 244 GAHPGGGVCGA--PGYIAAQMVNRLMR 268 (269)
Q Consensus 244 ~~~pG~Gv~gv--sg~~~a~~il~~~~ 268 (269)
++ +|.|+.|+ ||+.+|++|+++++
T Consensus 449 ~~-~g~gv~gA~~SG~~aA~~i~~~l~ 474 (478)
T 2ivd_A 449 AY-KGVGLNDCIRNAAQLADALVAGNT 474 (478)
T ss_dssp TT-SCCSHHHHHHHHHHHHHHHCC---
T ss_pred CC-CCCCHHHHHHHHHHHHHHHHHhhc
Confidence 98 67789885 99999999988764
No 8
>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*
Probab=99.02 E-value=1.7e-10 Score=109.03 Aligned_cols=225 Identities=9% Similarity=0.009 Sum_probs=131.0
Q ss_pred hhhhhHHHHHHhcCeeeeee---eeeeeceeeEEEecCCC---ccCccCCCCCCCCCCCCCCCcccccccccccccCccc
Q psy895 4 LSFLKDKEIEKKGGKRLRKI---TLVIRTRSIYCYECDSW---KDRRCLDPFNYSVLPIHQPALNPCNGCCVKMVRNSKT 77 (269)
Q Consensus 4 ~~~~~~~~i~~~gg~~~~~~---~~~~~~~~i~~~~~~~~---~~~~~~~~fi~~~~p~~~~~~~~~~~~~~~Ll~~~~~ 77 (269)
|.+.|.+.|.+ ++|..+. +|...+.++. +.++++ +.++|+. +|.++.| .+. .+|+. .+
T Consensus 241 l~~~l~~~l~~--~~i~~~~~V~~i~~~~~~v~-v~~~~g~~~~~~~ad~-vI~a~p~-----~~l-----~~l~~--~l 304 (489)
T 2jae_A 241 IYYAFQDRIGT--DNIVFGAEVTSMKNVSEGVT-VEYTAGGSKKSITADY-AICTIPP-----HLV-----GRLQN--NL 304 (489)
T ss_dssp HHHHHHHHHCG--GGEETTCEEEEEEEETTEEE-EEEEETTEEEEEEESE-EEECSCH-----HHH-----TTSEE--CC
T ss_pred HHHHHHHhcCC--CeEEECCEEEEEEEcCCeEE-EEEecCCeEEEEECCE-EEECCCH-----HHH-----HhCcc--CC
Confidence 44555555543 6776653 5555566555 666665 6789999 9999765 222 23332 45
Q ss_pred chhhhhhhccCCCCCceEEEEe--eccc-C---CCCCcceEeeeCCCCeEEEEcCCCCCCCCCCCCeeEEE-EEEecccc
Q psy895 78 EFESVRRTCTSKLDISLFMVDH--VCMY-E---GSGRGHMCFCESDRPMIEMVLPSSLDNTLSPPGHHVCL-LFTQFTPY 150 (269)
Q Consensus 78 ~~~~~~r~~~~~~s~s~f~vyl--~~~~-~---~~~~~~i~~~~~~~p~~~v~~ps~~Dp~~AP~G~~~l~-i~~~~~p~ 150 (269)
++...+.+++++++ +.+.+++ +..+ + ++..+.. .++.|..++..++..++ +|+ .++. .++. .+.
T Consensus 305 ~~~~~~~l~~~~~~-~~~kv~l~~~~~~w~~~~~~~g~~~---~~~~~~~~~~~~s~~~~--~~~--~~l~~~~~~-g~~ 375 (489)
T 2jae_A 305 PGDVLTALKAAKPS-SSGKLGIEYSRRWWETEDRIYGGAS---NTDKDISQIMFPYDHYN--SDR--GVVVAYYSS-GKR 375 (489)
T ss_dssp CHHHHHHHHTEECC-CEEEEEEEESSCHHHHTTCCCSCEE---EESSTTCEEECCSSSTT--SSC--EEEEEEEEE-THH
T ss_pred CHHHHHHHHhCCCc-cceEEEEEeCCCCccCCCCcccccc---cCCCCceEEEeCCCCCC--CCC--CEEEEEeeC-Cch
Confidence 56666778888776 6688887 4432 2 1211111 24556667776665443 232 2222 2222 111
Q ss_pred cCCCCCCCcHHHHHHHHHHHHHHHHHHCCC-CCcceEEEEecChhHHHHhhCCCCCccccccc----cccccccCCCCCC
Q psy895 151 KLAGDRDWTEEDKANYATNVFSSIEQYCPG-FTQDIVGYEILTPPDLEKEFGLTGGNIFHGAL----SLNQLLFNRPLPI 225 (269)
Q Consensus 151 ~~~~g~~w~~~~K~~~a~~il~~le~~~P~-i~~~I~~~~~~TP~t~~~y~~~~~GsiyG~~~----~~~q~~~~rp~~~ 225 (269)
. ..|...-++++.+.+++.|++.+|+ +++.+.... +.+|.+... ..|+...+.. .+.+....++
T Consensus 376 ~----~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~---~~~W~~~~~-~~G~~~~~~~~~~~~~~~~~~~~~--- 444 (489)
T 2jae_A 376 Q----EAFESLTHRQRLAKAIAEGSEIHGEKYTRDISSSF---SGSWRRTKY-SESAWANWAGSGGSHGGAATPEYE--- 444 (489)
T ss_dssp H----HHHHTSCHHHHHHHHHHHHHHHHCGGGGSSEEEEE---EEEGGGSTT-TSCSSCEETTC-------CCHHHH---
T ss_pred h----hhhhcCCHHHHHHHHHHHHHHHcCcchhhhccccE---EEEcCCCCC-CCCcchhcccccCCCcccchhhHH---
Confidence 1 1232222578899999999999998 877776543 445665432 3454432220 0111111122
Q ss_pred CCCCCCCCCCCcEEEcCCCC-CCCCCccch--HHHHHHHHHHHHhc
Q psy895 226 QGPSSPFTLIPHLLLCGSGA-HPGGGVCGA--PGYIAAQMVNRLMR 268 (269)
Q Consensus 226 ~~~~~~~t~i~nLyl~G~~~-~pG~Gv~gv--sg~~~a~~il~~~~ 268 (269)
..++|++||||+|+++ ++|+++.|+ ||..+|++|++.++
T Consensus 445 ----~l~~~~~~l~faG~~~~~~~~~v~gAi~sg~~aA~~i~~~l~ 486 (489)
T 2jae_A 445 ----KLLEPVDKIYFAGDHLSNAIAWQHGALTSARDVVTHIHERVA 486 (489)
T ss_dssp ----HHTSCBTTEEECSGGGBSSTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred ----HHhCCCCcEEEeEHHhccCccHHHHHHHHHHHHHHHHHHHHh
Confidence 3456789999999987 467789885 99999999998765
No 9
>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*
Probab=98.87 E-value=1.2e-08 Score=96.03 Aligned_cols=183 Identities=9% Similarity=-0.043 Sum_probs=120.5
Q ss_pred hhhhhhHHHHHHhcCeeeeee---eeeee--ceeeEEEecCCCccCccCCCCCCCCCCCCCCCcccccccccccccCccc
Q psy895 3 LLSFLKDKEIEKKGGKRLRKI---TLVIR--TRSIYCYECDSWKDRRCLDPFNYSVLPIHQPALNPCNGCCVKMVRNSKT 77 (269)
Q Consensus 3 ~~~~~~~~~i~~~gg~~~~~~---~~~~~--~~~i~~~~~~~~~~~~~~~~fi~~~~p~~~~~~~~~~~~~~~Ll~~~~~ 77 (269)
.|...|.+.++++||+++.+. +++.+ +.++..+.++ ++..+|+. +|.++.+. .
T Consensus 243 ~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~~V~~~-g~~~~ad~-VV~a~~~~----------------~---- 300 (453)
T 2bcg_G 243 ELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKTK-LGTFKAPL-VIADPTYF----------------P---- 300 (453)
T ss_dssp HHHHHHHHHHHHTTCEEECSCCCCEEEEETTTTEEEEEEET-TEEEECSC-EEECGGGC----------------G----
T ss_pred HHHHHHHHHHHHcCCEEECCCEEEEEEEECCCCeEEEEEEC-CeEEECCE-EEECCCcc----------------c----
Confidence 467889999999999998774 66666 6778888885 77788999 88885551 0
Q ss_pred chhhhhhhccCC-CCCceEEEEeecccCC---CCCcceEee---eCCCCeEEEEcCCCCCCCCCCCCeeEEEEEEecccc
Q psy895 78 EFESVRRTCTSK-LDISLFMVDHVCMYEG---SGRGHMCFC---ESDRPMIEMVLPSSLDNTLSPPGHHVCLLFTQFTPY 150 (269)
Q Consensus 78 ~~~~~~r~~~~~-~s~s~f~vyl~~~~~~---~~~~~i~~~---~~~~p~~~v~~ps~~Dp~~AP~G~~~l~i~~~~~p~ 150 (269)
.++++.+ .+.++|++ ++..+++ ..|+++++. ++.+|.+|+++++..| ++||+|++.++++++ +|+
T Consensus 301 -----~~l~~~~~~~~~~~~i-~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~v~~~s~~d-~~aP~G~~~~~v~~~-~~~ 372 (453)
T 2bcg_G 301 -----EKCKSTGQRVIRAICI-LNHPVPNTSNADSLQIIIPQSQLGRKSDIYVAIVSDAH-NVCSKGHYLAIISTI-IET 372 (453)
T ss_dssp -----GGEEEEEEEEEEEEEE-ESSCCTTSTTCSSEEEEECGGGTTCSSCEEEEEEEGGG-TSSCTTCEEEEEEEE-CCS
T ss_pred -----hhhcccCCcceeEEEE-EccccCCCCCCccEEEEeCccccCCCCCEEEEEeCCCC-CCCCCCcEEEEEEEe-cCC
Confidence 1223334 68888888 6666663 346666543 3457899999999999 999999999999998 765
Q ss_pred cCCCCCCCcHHHHHHHHHHHHHHHHHHCCCCCcceEEEEecChhHHHHhhCCCCCccccccccccccccCCCCCCCCCCC
Q psy895 151 KLAGDRDWTEEDKANYATNVFSSIEQYCPGFTQDIVGYEILTPPDLEKEFGLTGGNIFHGALSLNQLLFNRPLPIQGPSS 230 (269)
Q Consensus 151 ~~~~g~~w~~~~K~~~a~~il~~le~~~P~i~~~I~~~~~~TP~t~~~y~~~~~GsiyG~~~~~~q~~~~rp~~~~~~~~ 230 (269)
. + . .+ .+-..+|+..|..+..+...+ .| .| .
T Consensus 373 ~-----~---~-~~----~l~~~~~~l~~~~~~~~~~~~-----------------~~------------~~-------~ 403 (453)
T 2bcg_G 373 D-----K---P-HI----ELEPAFKLLGPIEEKFMGIAE-----------------LF------------EP-------R 403 (453)
T ss_dssp S-----C---H-HH----HTHHHHGGGCSCSEEEEEEEE-----------------EE------------EE-------S
T ss_pred C-----C---H-HH----HHHHHHHHhhhHHHhhccchh-----------------ee------------ee-------c
Confidence 2 1 1 11 233444444565444333321 11 12 1
Q ss_pred CCCCCCcEEEcCCCCCCCCCccch--HHHHHHHHHHH
Q psy895 231 PFTLIPHLLLCGSGAHPGGGVCGA--PGYIAAQMVNR 265 (269)
Q Consensus 231 ~~t~i~nLyl~G~~~~pG~Gv~gv--sg~~~a~~il~ 265 (269)
....-+|+|+||+--. ...+-++ +++.++++|++
T Consensus 404 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g 439 (453)
T 2bcg_G 404 EDGSKDNIYLSRSYDA-SSHFESMTDDVKDIYFRVTG 439 (453)
T ss_dssp SCSTTTSEEECCCCCS-CSBSHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCEEECCCCCc-cccHHHHHHHHHHHHHHHHC
Confidence 1123489999987552 2234443 88999999885
No 10
>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A
Probab=98.72 E-value=1.8e-08 Score=94.36 Aligned_cols=118 Identities=9% Similarity=0.068 Sum_probs=86.6
Q ss_pred hhhhhhHHHHHHhcCeeeeee---eeeeeceeeEEEecCCCccCccCCCCCCCCCCCCCCCcccccccccccccCcccch
Q psy895 3 LLSFLKDKEIEKKGGKRLRKI---TLVIRTRSIYCYECDSWKDRRCLDPFNYSVLPIHQPALNPCNGCCVKMVRNSKTEF 79 (269)
Q Consensus 3 ~~~~~~~~~i~~~gg~~~~~~---~~~~~~~~i~~~~~~~~~~~~~~~~fi~~~~p~~~~~~~~~~~~~~~Ll~~~~~~~ 79 (269)
.|...|.+.++++||+++.+. +++.++.++..+.+ +++..+|+. +|.++.+.. .++
T Consensus 235 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~v~~v~~-~g~~~~ad~-VV~a~~~~~------------~~~------- 293 (433)
T 1d5t_A 235 ELPQGFARLSAIYGGTYMLNKPVDDIIMENGKVVGVKS-EGEVARCKQ-LICDPSYVP------------DRV------- 293 (433)
T ss_dssp HHHHHHHHHHHHHTCCCBCSCCCCEEEEETTEEEEEEE-TTEEEECSE-EEECGGGCG------------GGE-------
T ss_pred HHHHHHHHHHHHcCCEEECCCEEEEEEEeCCEEEEEEE-CCeEEECCE-EEECCCCCc------------ccc-------
Confidence 467789999999999998874 66667777777775 567789999 888866521 011
Q ss_pred hhhhhhccCCCCCceEEEEeecccCCC---CCcceEee---eCCCCeEEEEcCCCCCCCCCCCCeeEEEEEEecccc
Q psy895 80 ESVRRTCTSKLDISLFMVDHVCMYEGS---GRGHMCFC---ESDRPMIEMVLPSSLDNTLSPPGHHVCLLFTQFTPY 150 (269)
Q Consensus 80 ~~~~r~~~~~~s~s~f~vyl~~~~~~~---~~~~i~~~---~~~~p~~~v~~ps~~Dp~~AP~G~~~l~i~~~~~p~ 150 (269)
++++.+.++|++ ++..+++. .||++++. ++++|.+|+++++ .||++||+|+++++++++ +|.
T Consensus 294 ------~~~~~~~~~~~i-l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~s-~d~~~aP~G~~~~~~~~~-~p~ 361 (433)
T 1d5t_A 294 ------RKAGQVIRIICI-LSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMIS-YAHNVAAQGKYIAIASTT-VET 361 (433)
T ss_dssp ------EEEEEEEEEEEE-ESSCCTTSTTCSSEEEEECGGGTTCSSCEEEEEEE-GGGTSSCTTCEEEEEEEE-CCS
T ss_pred ------cccCcceeEEEE-EcCcccccCCCceEEEEeCccccCCCCCEEEEEEC-CCCcccCCCCEEEEEEEe-cCC
Confidence 112235667765 56666644 57776653 3467899999999 999999999999999998 765
No 11
>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5
Probab=98.65 E-value=2.4e-09 Score=101.37 Aligned_cols=210 Identities=10% Similarity=-0.014 Sum_probs=109.1
Q ss_pred Ceeeeee---eeeeeceee-----EEEec--CCC---ccCccCCCCCCCCCCCCCCCcccccccccccccC---cccchh
Q psy895 17 GKRLRKI---TLVIRTRSI-----YCYEC--DSW---KDRRCLDPFNYSVLPIHQPALNPCNGCCVKMVRN---SKTEFE 80 (269)
Q Consensus 17 g~~~~~~---~~~~~~~~i-----~~~~~--~~~---~~~~~~~~fi~~~~p~~~~~~~~~~~~~~~Ll~~---~~~~~~ 80 (269)
++|..+. +|+..+... ..|.+ +++ +..+|+. +|+++.+ .++ .+|+.+ ..+++.
T Consensus 256 ~~i~~~~~V~~I~~~~~~~~~~~~~~v~~~~~~g~~~~~~~ad~-VI~a~p~-----~~l-----~~ll~~~~~~~~~~~ 324 (504)
T 1sez_A 256 DELRLNSRVLELSCSCTEDSAIDSWSIISASPHKRQSEEESFDA-VIMTAPL-----CDV-----KSMKIAKRGNPFLLN 324 (504)
T ss_dssp TTEETTCCEEEEEEECSSSSSSCEEEEEEBCSSSSCBCCCEESE-EEECSCH-----HHH-----HTSEEESSSSBCCCT
T ss_pred ceEEcCCeEEEEEecCCCCcccceEEEEEcCCCCccceeEECCE-EEECCCH-----HHH-----HHHhhcccCCcccHH
Confidence 6776664 554444431 23333 345 5788999 9999766 333 455521 122222
Q ss_pred hhhhhccCCCCCceEEEEe--ecc-cC-CCCCcceEeeeCCC------CeEEEEcCCCCCCCCCCCCeeEEEEEEecccc
Q psy895 81 SVRRTCTSKLDISLFMVDH--VCM-YE-GSGRGHMCFCESDR------PMIEMVLPSSLDNTLSPPGHHVCLLFTQFTPY 150 (269)
Q Consensus 81 ~~~r~~~~~~s~s~f~vyl--~~~-~~-~~~~~~i~~~~~~~------p~~~v~~ps~~Dp~~AP~G~~~l~i~~~~~p~ 150 (269)
. +.+++.. +...+++ +.. ++ .+.++.+. .|.+ +..-+..++..+|..+|+|+..++.++. -+.
T Consensus 325 ~---l~~~~~~-~~~~v~l~~~~~~~~~~~~~~~~l--~~~~~~~~g~~~~~~~~~s~~~~~~~p~g~~~l~~~~~-g~~ 397 (504)
T 1sez_A 325 F---IPEVDYV-PLSVVITTFKRENVKYPLEGFGVL--VPSKEQQHGLKTLGTLFSSMMFPDRAPNNVYLYTTFVG-GSR 397 (504)
T ss_dssp T---SCCCCEE-EEEEEEEEEEGGGBSSCCCSSEEE--CCGGGGGGTCCSSEEEEHHHHCGGGSCTTEEEEEEEEE-STT
T ss_pred H---HhcCCCC-ceEEEEEEEchhhcCCCCCceEEE--cCCCCCCCCCccceEEeeccccCCcCCCCCEEEEEEeC-CCC
Confidence 2 4444432 4555555 433 33 23222222 1211 2222233445677888999877666543 222
Q ss_pred cCCCCCCCcHHHHHHHHHHHHHHHHHHCCCCCcceEEEEe-cChhHHHHhhCCCCCccccccccccccccCCCCCCCCCC
Q psy895 151 KLAGDRDWTEEDKANYATNVFSSIEQYCPGFTQDIVGYEI-LTPPDLEKEFGLTGGNIFHGALSLNQLLFNRPLPIQGPS 229 (269)
Q Consensus 151 ~~~~g~~w~~~~K~~~a~~il~~le~~~P~i~~~I~~~~~-~TP~t~~~y~~~~~GsiyG~~~~~~q~~~~rp~~~~~~~ 229 (269)
. ..|...-.+++.+.+++.|++.++.-. ......+ .-+..+-.| ..| ........ +
T Consensus 398 ~----~~~~~~~~ee~~~~v~~~L~~~~g~~~-~p~~~~~~~w~~~~p~~---~~g----~~~~~~~~----~------- 454 (504)
T 1sez_A 398 N----RELAKASRTELKEIVTSDLKQLLGAEG-EPTYVNHLYWSKAFPLY---GHN----YDSVLDAI----D------- 454 (504)
T ss_dssp C----GGGTTCCHHHHHHHHHHHHHHHHCBCS-CCSSEEEEEEEEEEECC---CTT----HHHHHHHH----H-------
T ss_pred c----ccccCCCHHHHHHHHHHHHHHHhCCCC-CCeEEEEeECCCCCCcc---CcC----HHHHHHHH----H-------
Confidence 1 123222356788999999999987522 1111110 001010011 111 11111110 0
Q ss_pred CCCCCCCcEEEcCCCCCCCCCccch--HHHHHHHHHHHHhc
Q psy895 230 SPFTLIPHLLLCGSGAHPGGGVCGA--PGYIAAQMVNRLMR 268 (269)
Q Consensus 230 ~~~t~i~nLyl~G~~~~pG~Gv~gv--sg~~~a~~il~~~~ 268 (269)
...++++|||++|+++. |.|+.++ ||+.+|++|+++++
T Consensus 455 ~~~~~~~~l~~aG~~~~-g~~v~gai~sG~~aA~~il~~l~ 494 (504)
T 1sez_A 455 KMEKNLPGLFYAGNHRG-GLSVGKALSSGCNAADLVISYLE 494 (504)
T ss_dssp HHHHHSTTEEECCSSSS-CSSHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHhCCCEEEEeecCC-CCCHHHHHHHHHHHHHHHHHHHh
Confidence 23456899999999986 6788884 99999999998875
No 12
>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}
Probab=98.52 E-value=3.4e-07 Score=82.34 Aligned_cols=206 Identities=11% Similarity=0.093 Sum_probs=115.3
Q ss_pred HhcCeeeeee---eeeeeceeeEEEecCCCccCccCCCCCCCCCCCCCCCcccccccccccccC--cccchhhhhhhccC
Q psy895 14 KKGGKRLRKI---TLVIRTRSIYCYECDSWKDRRCLDPFNYSVLPIHQPALNPCNGCCVKMVRN--SKTEFESVRRTCTS 88 (269)
Q Consensus 14 ~~gg~~~~~~---~~~~~~~~i~~~~~~~~~~~~~~~~fi~~~~p~~~~~~~~~~~~~~~Ll~~--~~~~~~~~~r~~~~ 88 (269)
+.|++|..+. .++..+..+. +.+++++..+++. +|.++++ ... .+|+.+ ..+++...+.++++
T Consensus 121 ~~g~~i~~~~~V~~i~~~~~~~~-v~~~~g~~~~ad~-vV~A~p~-----~~~-----~~ll~~~~~~l~~~~~~~l~~~ 188 (342)
T 3qj4_A 121 ESGAEVYFRHRVTQINLRDDKWE-VSKQTGSPEQFDL-IVLTMPV-----PEI-----LQLQGDITTLISECQRQQLEAV 188 (342)
T ss_dssp HHTCEEESSCCEEEEEECSSSEE-EEESSSCCEEESE-EEECSCH-----HHH-----TTCBSTHHHHSCHHHHHHHHTC
T ss_pred hcCCEEEeCCEEEEEEEcCCEEE-EEECCCCEEEcCE-EEECCCH-----HHH-----HHHhcccccccCHHHHHHHhcC
Confidence 3488888775 5545544443 7778888789999 9988765 333 567754 23455667888888
Q ss_pred CCCCceEEEEe--eccc-CCCCCcceEeeeCCCC-eEEEEcCCCCCCCCC-CCCeeEEEEEEecccccCCCCCCCcHHHH
Q psy895 89 KLDISLFMVDH--VCMY-EGSGRGHMCFCESDRP-MIEMVLPSSLDNTLS-PPGHHVCLLFTQFTPYKLAGDRDWTEEDK 163 (269)
Q Consensus 89 ~~s~s~f~vyl--~~~~-~~~~~~~i~~~~~~~p-~~~v~~ps~~Dp~~A-P~G~~~l~i~~~~~p~~~~~g~~w~~~~K 163 (269)
+++ +.++|++ +..+ ...+..-+. .++.+ .-++...+.+ |.+. |++...+.+++- ..+. .++.+.-.
T Consensus 189 ~~~-~~~~v~l~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~k-~~r~~~~~~~~~v~~~~-~~~~----~~~~~~~~ 259 (342)
T 3qj4_A 189 SYS-SRYALGLFYEAGTKIDVPWAGQY--ITSNPCIRFVSIDNKK-RNIESSEIGPSLVIHTT-VPFG----VTYLEHSI 259 (342)
T ss_dssp CBC-CEEEEEEECSSCC--CCSCSEEE--CSSCSSEEEEEEHHHH-TTCCCC-CCCEEEEEEC-HHHH----HHTTTSCH
T ss_pred Ccc-ccEEEEEEECCCCccCCceeeEE--ccCCcceEEEEccccC-CCCCCCCCCceEEEECC-HHHH----HHhhcCCH
Confidence 876 6677777 5432 222222111 13333 3344333333 4333 333334555443 2221 01111235
Q ss_pred HHHHHHHHHHHHHHCCCCCcceEEEEecChhHHHHh-hCCCCCccccccccccccccCCCCCCCCCCCCC--CCCCcEEE
Q psy895 164 ANYATNVFSSIEQYCPGFTQDIVGYEILTPPDLEKE-FGLTGGNIFHGALSLNQLLFNRPLPIQGPSSPF--TLIPHLLL 240 (269)
Q Consensus 164 ~~~a~~il~~le~~~P~i~~~I~~~~~~TP~t~~~y-~~~~~GsiyG~~~~~~q~~~~rp~~~~~~~~~~--t~i~nLyl 240 (269)
+++.+.+++.+++.++...+-+ +..+ .|+ +..+. |+.. .+| ... ...+||++
T Consensus 260 ~~~~~~~~~~l~~~~g~~~~p~-~~~v------~rW~~a~p~---~~~~--------~~~-------~~~~~~~~~~l~l 314 (342)
T 3qj4_A 260 EDVQELVFQQLENILPGLPQPI-ATKC------QKWRHSQVT---NAAA--------NCP-------GQMTLHHKPFLAC 314 (342)
T ss_dssp HHHHHHHHHHHHHHSCSCCCCS-EEEE------EEETTCSBS---SCCS--------SSC-------SCEEEETTTEEEE
T ss_pred HHHHHHHHHHHHHhccCCCCCc-eeee------ccccccccc---cccC--------CCc-------ceeEecCCccEEE
Confidence 7899999999999987443211 1111 111 11111 1110 012 222 35799999
Q ss_pred cCCCCCCCCCccch--HHHHHHHHHHHH
Q psy895 241 CGSGAHPGGGVCGA--PGYIAAQMVNRL 266 (269)
Q Consensus 241 ~G~~~~pG~Gv~gv--sg~~~a~~il~~ 266 (269)
||+|.. |.||+++ ||..+|++|+..
T Consensus 315 aGd~~~-g~~v~~ai~sg~~aa~~i~~~ 341 (342)
T 3qj4_A 315 GGDGFT-QSNFDGCITSALCVLEALKNY 341 (342)
T ss_dssp CSGGGS-CSSHHHHHHHHHHHHHHHTTC
T ss_pred EccccC-CCCccHHHHHHHHHHHHHHhh
Confidence 999996 5689884 999999999764
No 13
>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}
Probab=98.51 E-value=3.1e-08 Score=92.90 Aligned_cols=229 Identities=13% Similarity=0.013 Sum_probs=119.5
Q ss_pred hhhhhhHHHHHHhcCeeeeee---eeeeeceeeEEEecCCCccCccCCCCCCCCCCCCCCCcccccccccccccCcccch
Q psy895 3 LLSFLKDKEIEKKGGKRLRKI---TLVIRTRSIYCYECDSWKDRRCLDPFNYSVLPIHQPALNPCNGCCVKMVRNSKTEF 79 (269)
Q Consensus 3 ~~~~~~~~~i~~~gg~~~~~~---~~~~~~~~i~~~~~~~~~~~~~~~~fi~~~~p~~~~~~~~~~~~~~~Ll~~~~~~~ 79 (269)
.|.+.|.+.|++.|++|..+. .|+..+..+..+.++ +....|+. +|.++.+ .+. .+|+++. .+
T Consensus 235 ~l~~~l~~~l~~~g~~i~~~~~V~~i~~~~~~~~~v~~~-~~~~~ad~-vv~a~p~-----~~~-----~~ll~~~--~~ 300 (477)
T 3nks_A 235 MLPQALETHLTSRGVSVLRGQPVCGLSLQAEGRWKVSLR-DSSLEADH-VISAIPA-----SVL-----SELLPAE--AA 300 (477)
T ss_dssp HHHHHHHHHHHHTTCEEECSCCCCEEEECGGGCEEEECS-SCEEEESE-EEECSCH-----HHH-----HHHSCGG--GH
T ss_pred HHHHHHHHHHHhcCCEEEeCCEEEEEEEcCCceEEEEEC-CeEEEcCE-EEECCCH-----HHH-----HHhcccc--CH
Confidence 477889999999999999885 655555444456665 44688999 9998655 222 4566542 35
Q ss_pred hhhhhhccCCCCCceEEEEe--ecc-cCCCCCcceEeeeCCCCeEEEEcCCCCCCCCC-CCCeeEEEEEEecccccC-CC
Q psy895 80 ESVRRTCTSKLDISLFMVDH--VCM-YEGSGRGHMCFCESDRPMIEMVLPSSLDNTLS-PPGHHVCLLFTQFTPYKL-AG 154 (269)
Q Consensus 80 ~~~~r~~~~~~s~s~f~vyl--~~~-~~~~~~~~i~~~~~~~p~~~v~~ps~~Dp~~A-P~G~~~l~i~~~~~p~~~-~~ 154 (269)
.+.+.+.++++. +...+++ +.. ++......+...-...+.+-+...+..-|..+ |+|+..++++.. ..+.. ..
T Consensus 301 ~~~~~l~~~~~~-~~~~v~l~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~l~~~~g-g~~~~~~~ 378 (477)
T 3nks_A 301 PLARALSAITAV-SVAVVNLQYQGAHLPVQGFGHLVPSSEDPGVLGIVYDSVAFPEQDGSPPGLRVTVMLG-GSWLQTLE 378 (477)
T ss_dssp HHHHHHHTCCEE-EEEEEEEEETTCCCSSCSSEEECCTTTCSSEEEEECHHHHCGGGSTTTTCEEEEEEEC-HHHHHHHH
T ss_pred HHHHHHhcCCCC-cEEEEEEEECCCCCCCCCceEEccCCCCCCceEEEEeccccCCCCCCCCceEEEEEEC-Cccccccc
Confidence 566777777653 4455666 433 22111111110001223333333333333333 347777777653 22210 00
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHCCCCCcceEEEEecChhHHHHhhCCCCCccccccccccccccCCCCCCCCCCCCCCC
Q psy895 155 DRDWTEEDKANYATNVFSSIEQYCPGFTQDIVGYEILTPPDLEKEFGLTGGNIFHGALSLNQLLFNRPLPIQGPSSPFTL 234 (269)
Q Consensus 155 g~~w~~~~K~~~a~~il~~le~~~P~i~~~I~~~~~~TP~t~~~y~~~~~GsiyG~~~~~~q~~~~rp~~~~~~~~~~t~ 234 (269)
+..|+ .-.+++.+.+++.|++.++...+-+.......|..+-.| .-|. ....... +. .....
T Consensus 379 ~~~~~-~~~~~~~~~~~~~L~~~~g~~~~~~~~~v~rw~~a~p~~---~~g~----~~~~~~~---~~-------~l~~~ 440 (477)
T 3nks_A 379 ASGCV-LSQELFQQRAQEAAATQLGLKEMPSHCLVHLHKNCIPQY---TLGH----WQKLESA---RQ-------FLTAH 440 (477)
T ss_dssp HSSCC-CCHHHHHHHHHHHHHHHHCCCSCCSEEEEEEEEEEEECC---BTTH----HHHHHHH---HH-------HHHHT
T ss_pred cccCC-CCHHHHHHHHHHHHHHHhCCCCCCcEEEEEEcCCccCCC---CCCH----HHHHHHH---HH-------HHHhc
Confidence 11121 134678899999999976422211111111111111111 0000 0000000 00 00011
Q ss_pred CCcEEEcCCCCCCCCCccch--HHHHHHHHHHHH
Q psy895 235 IPHLLLCGSGAHPGGGVCGA--PGYIAAQMVNRL 266 (269)
Q Consensus 235 i~nLyl~G~~~~pG~Gv~gv--sg~~~a~~il~~ 266 (269)
-+|||++|++. .|.||+++ ||..+|++|+++
T Consensus 441 ~~~l~l~G~~~-~G~gv~~a~~sg~~aA~~il~~ 473 (477)
T 3nks_A 441 RLPLTLAGASY-EGVAVNDCIESGRQAAVSVLGT 473 (477)
T ss_dssp TCSEEECSTTT-SCCSHHHHHHHHHHHHHHHHHC
T ss_pred CCCEEEEccCC-CCCcHHHHHHHHHHHHHHHHhc
Confidence 36899999996 68899874 999999999985
No 14
>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*
Probab=98.29 E-value=1.2e-07 Score=89.55 Aligned_cols=224 Identities=12% Similarity=-0.005 Sum_probs=117.2
Q ss_pred hhhhhHHHHHHhcCeeeeee---eeeeeceeeEEEecCCCcc----CccCCCCCCCCCCCCCCCcccccccccccccCcc
Q psy895 4 LSFLKDKEIEKKGGKRLRKI---TLVIRTRSIYCYECDSWKD----RRCLDPFNYSVLPIHQPALNPCNGCCVKMVRNSK 76 (269)
Q Consensus 4 ~~~~~~~~i~~~gg~~~~~~---~~~~~~~~i~~~~~~~~~~----~~~~~~fi~~~~p~~~~~~~~~~~~~~~Ll~~~~ 76 (269)
|.+.|.+.|++ +|..+. +|..++..+ .+.|++++. .+|+. +|.++.+ .+. .++.-...
T Consensus 243 l~~~l~~~l~~---~i~~~~~V~~I~~~~~~v-~v~~~~~~~~~~~~~ad~-vI~t~p~-----~~~-----~~i~f~p~ 307 (498)
T 2iid_A 243 LPTAMYRDIQD---KVHFNAQVIKIQQNDQKV-TVVYETLSKETPSVTADY-VIVCTTS-----RAV-----RLIKFNPP 307 (498)
T ss_dssp HHHHHHHHTGG---GEESSCEEEEEEECSSCE-EEEEECSSSCCCEEEESE-EEECSCH-----HHH-----TTSEEESC
T ss_pred HHHHHHHhccc---ccccCCEEEEEEECCCeE-EEEEecCCcccceEEeCE-EEECCCh-----HHH-----hheecCCC
Confidence 34445554443 565553 555554444 466666553 58999 9999665 222 23321233
Q ss_pred cchhhhhhhccCCCCCceEEEEe--eccc-CC--CCCcceEeeeCCCCeEEEEcCCCCCCCCCCCCeeEEEEEEeccccc
Q psy895 77 TEFESVRRTCTSKLDISLFMVDH--VCMY-EG--SGRGHMCFCESDRPMIEMVLPSSLDNTLSPPGHHVCLLFTQFTPYK 151 (269)
Q Consensus 77 ~~~~~~~r~~~~~~s~s~f~vyl--~~~~-~~--~~~~~i~~~~~~~p~~~v~~ps~~Dp~~AP~G~~~l~i~~~~~p~~ 151 (269)
+++...+.++++.++. ...+++ +..+ +. +..... ..+.|..++..++ ..+|.|..++..++. -+..
T Consensus 308 Lp~~~~~ai~~l~~~~-~~kv~l~~~~~~w~~~~~~~~~~---~~~~~~~~~~~~s----~~~p~g~~~L~~~~~-g~~a 378 (498)
T 2iid_A 308 LLPKKAHALRSVHYRS-GTKIFLTCTTKFWEDDGIHGGKS---TTDLPSRFIYYPN----HNFTNGVGVIIAYGI-GDDA 378 (498)
T ss_dssp CCHHHHHHHHHCCEEC-EEEEEEEESSCGGGGGTCCSSEE---EESSTTCEEECCS----SCCTTSCEEEEEEEE-HHHH
T ss_pred CCHHHHHHHHhCCCcc-eeEEEEEeCCCCccCCCccCCcc---cCCCCcceEEECC----CCCCCCCcEEEEEeC-CccH
Confidence 6677777788888765 457777 4433 32 211111 1234444555444 125777766666443 2211
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHHHHHCCCCCcce----EEEEecChhHHHHhhCCCCCccccccccccccccCCCCCCCC
Q psy895 152 LAGDRDWTEEDKANYATNVFSSIEQYCPGFTQDI----VGYEILTPPDLEKEFGLTGGNIFHGALSLNQLLFNRPLPIQG 227 (269)
Q Consensus 152 ~~~g~~w~~~~K~~~a~~il~~le~~~P~i~~~I----~~~~~~TP~t~~~y~~~~~GsiyG~~~~~~q~~~~rp~~~~~ 227 (269)
..|...-.+++.+.+++.|++.++.-.+.+ ....+ ..|.+.- ...|+...... .+...+++
T Consensus 379 ----~~~~~~~~~~~~~~~l~~L~~~~g~~~~~~~~~~~~~~~---~~W~~~p-~~~G~~~~~~~--~~~~~~~~----- 443 (498)
T 2iid_A 379 ----NFFQALDFKDCADIVFNDLSLIHQLPKKDIQSFCYPSVI---QKWSLDK-YAMGGITTFTP--YQFQHFSD----- 443 (498)
T ss_dssp ----HTTTTSCHHHHHHHHHHHHHHHHTCCHHHHHHHEEEEEE---EEGGGCT-TTCSSEECCCT--THHHHHHH-----
T ss_pred ----hhhhcCCHHHHHHHHHHHHHHHcCCChhhhhhhcCccEE---EecCCCC-CCCceeeecCC--cchHHHHH-----
Confidence 123321235688889999999876222211 11110 1222211 12343321111 11111112
Q ss_pred CCCCCCCCCcEEEcCCCCCCCC-Cccch--HHHHHHHHHHHHhc
Q psy895 228 PSSPFTLIPHLLLCGSGAHPGG-GVCGA--PGYIAAQMVNRLMR 268 (269)
Q Consensus 228 ~~~~~t~i~nLyl~G~~~~pG~-Gv~gv--sg~~~a~~il~~~~ 268 (269)
..+++++||||+|..+...+ ++.|+ ||+.+|++|++.++
T Consensus 444 --~l~~p~~~l~fAGe~t~~~~g~~~GAi~SG~raA~~i~~~l~ 485 (498)
T 2iid_A 444 --PLTASQGRIYFAGEYTAQAHGWIDSTIKSGLRAARDVNLASE 485 (498)
T ss_dssp --HHHCCBTTEEECSGGGSSSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHhCCCCcEEEEEcccccCCcCHHHHHHHHHHHHHHHHHHhc
Confidence 33557899999999995433 56674 99999999998763
No 15
>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}
Probab=98.21 E-value=3.7e-07 Score=84.94 Aligned_cols=219 Identities=11% Similarity=0.021 Sum_probs=113.5
Q ss_pred hhHHHHHHhc--Ceeeeee---eeeeeceeeEEEecCCCccCccCCCCCCCCCCCCCCCcccccccccccccCcccchhh
Q psy895 7 LKDKEIEKKG--GKRLRKI---TLVIRTRSIYCYECDSWKDRRCLDPFNYSVLPIHQPALNPCNGCCVKMVRNSKTEFES 81 (269)
Q Consensus 7 ~~~~~i~~~g--g~~~~~~---~~~~~~~~i~~~~~~~~~~~~~~~~fi~~~~p~~~~~~~~~~~~~~~Ll~~~~~~~~~ 81 (269)
.|.+.+.+.- ++|..+. .++.++..+ .+.|++|+..+|+. +|.++.+ .+. .+|+.+. +.
T Consensus 236 ~l~~~l~~~l~~~~i~~~~~V~~i~~~~~~~-~v~~~~g~~~~ad~-vi~a~p~-----~~~-----~~l~~~~----~~ 299 (470)
T 3i6d_A 236 TLVEEIEKQLKLTKVYKGTKVTKLSHSGSCY-SLELDNGVTLDADS-VIVTAPH-----KAA-----AGMLSEL----PA 299 (470)
T ss_dssp HHHHHHHHTCCSEEEECSCCEEEEEECSSSE-EEEESSSCEEEESE-EEECSCH-----HHH-----HHHTTTS----TT
T ss_pred HHHHHHHHhcCCCEEEeCCceEEEEEcCCeE-EEEECCCCEEECCE-EEECCCH-----HHH-----HHHcCCc----hh
Confidence 4455555444 4776664 555555443 57888998899999 9988655 222 3455432 22
Q ss_pred hhhhccCCCCCceEEEEe--eccc-CCCCCcceEeeeCCC---CeEEEEcCCCCCCCCCCCCeeEEEEEEecccccCCCC
Q psy895 82 VRRTCTSKLDISLFMVDH--VCMY-EGSGRGHMCFCESDR---PMIEMVLPSSLDNTLSPPGHHVCLLFTQFTPYKLAGD 155 (269)
Q Consensus 82 ~~r~~~~~~s~s~f~vyl--~~~~-~~~~~~~i~~~~~~~---p~~~v~~ps~~Dp~~AP~G~~~l~i~~~~~p~~~~~g 155 (269)
.+.++++++. +...+++ +..+ +..... ..+..+.. +..-+...+...+..+|+|+..+.++.. .+..
T Consensus 300 ~~~~~~~~~~-~~~~v~l~~~~~~~~~~~~~-~g~l~~~~~~~~~~~~~~~s~~~~~~~p~~~~~l~~~~~-~~~~---- 372 (470)
T 3i6d_A 300 ISHLKNMHST-SVANVALGFPEGSVQMEHEG-TGFVISRNSDFAITACTWTNKKWPHAAPEGKTLLRAYVG-KAGD---- 372 (470)
T ss_dssp HHHHHTCEEE-EEEEEEEEESSTTCCCSSCS-SEEEECSTTCCSEEEEEEHHHHCGGGSCTTCEEEEEEEC-CSSC----
T ss_pred hHHHhcCCCC-ceEEEEEEECchhcCCCCCC-eEEEccCCCCCCceEEEEEcCcCCCcCCCCCEEEEEEEC-CCCC----
Confidence 3455555543 3445555 4433 221111 11112322 2222333333445677888776666543 2221
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHCCCCCcceEEEEecChhHHHHhhCCCCCccccccccc-cccccCCCCCCCCCCCCCCC
Q psy895 156 RDWTEEDKANYATNVFSSIEQYCPGFTQDIVGYEILTPPDLEKEFGLTGGNIFHGALSL-NQLLFNRPLPIQGPSSPFTL 234 (269)
Q Consensus 156 ~~w~~~~K~~~a~~il~~le~~~P~i~~~I~~~~~~TP~t~~~y~~~~~GsiyG~~~~~-~q~~~~rp~~~~~~~~~~t~ 234 (269)
..+.+.-.+++.+.+++.|++.+|...+-+..... ++ .+++..+.... .+....++ ..+++
T Consensus 373 ~~~~~~~~~~~~~~~~~~l~~~~g~~~~p~~~~~~-------~w----~~a~p~~~~g~~~~~~~~~~-------~l~~~ 434 (470)
T 3i6d_A 373 ESIVDLSDNDIINIVLEDLKKVMNINGEPEMTCVT-------RW----HESMPQYHVGHKQRIKELRE-------ALASA 434 (470)
T ss_dssp CGGGTSCHHHHHHHHHHHHGGGSCCCSCCSEEEEE-------EE----EEEEEECBTTHHHHHHHHHH-------HHHHH
T ss_pred ccccCCCHHHHHHHHHHHHHHHhCCCCCceEEEEE-------Ec----CCccCCCCCCHHHHHHHHHH-------HHHhh
Confidence 11221234678899999999998754322111110 00 01110000000 00000111 12245
Q ss_pred CCcEEEcCCCCCCCCCccch--HHHHHHHHHHHHh
Q psy895 235 IPHLLLCGSGAHPGGGVCGA--PGYIAAQMVNRLM 267 (269)
Q Consensus 235 i~nLyl~G~~~~pG~Gv~gv--sg~~~a~~il~~~ 267 (269)
++|||++|++.. |.|+.++ ||..+|++|++++
T Consensus 435 ~~~l~~aG~~~~-g~gv~~a~~sG~~aA~~i~~~l 468 (470)
T 3i6d_A 435 YPGVYMTGASFE-GVGIPDCIDQGKAAVSDALTYL 468 (470)
T ss_dssp STTEEECSTTTS-CCSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeecCC-CCCHHHHHHHHHHHHHHHHHHh
Confidence 789999999885 6788874 9999999999876
No 16
>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*
Probab=97.98 E-value=6e-06 Score=77.80 Aligned_cols=220 Identities=10% Similarity=-0.011 Sum_probs=116.2
Q ss_pred hhhhhhHHHHHHhc-Ceeeeee---eeeeeceeeEEEecCCCccCccCCCCCCCCCCCCCCCcccccccccccccCcccc
Q psy895 3 LLSFLKDKEIEKKG-GKRLRKI---TLVIRTRSIYCYECDSWKDRRCLDPFNYSVLPIHQPALNPCNGCCVKMVRNSKTE 78 (269)
Q Consensus 3 ~~~~~~~~~i~~~g-g~~~~~~---~~~~~~~~i~~~~~~~~~~~~~~~~fi~~~~p~~~~~~~~~~~~~~~Ll~~~~~~ 78 (269)
-|.+.|.+.+++.| ++++.+. .++..+..+ .+.+++++.++|+. +|.++.+- +. .+|+-...++
T Consensus 256 ~l~~~l~~~l~~~g~~~i~~~~~V~~i~~~~~~v-~v~~~~g~~~~ad~-vI~a~~~~-----~l-----~~i~~~p~lp 323 (495)
T 2vvm_A 256 AFARRFWEEAAGTGRLGYVFGCPVRSVVNERDAA-RVTARDGREFVAKR-VVCTIPLN-----VL-----STIQFSPALS 323 (495)
T ss_dssp HHHHHHHHHHHTTTCEEEESSCCEEEEEECSSSE-EEEETTCCEEEEEE-EEECCCGG-----GG-----GGSEEESCCC
T ss_pred HHHHHHHHHhhhcCceEEEeCCEEEEEEEcCCEE-EEEECCCCEEEcCE-EEECCCHH-----HH-----hheeeCCCCC
Confidence 35677888899998 8887774 554444444 47788888899999 99987662 22 2343233455
Q ss_pred hhhhhhhccCCCCCceEEEEe--eccc-CCCCCcceEeeeCCCCeEEEEcCCCCCCCCCCCCeeEEEEEEecccccCCCC
Q psy895 79 FESVRRTCTSKLDISLFMVDH--VCMY-EGSGRGHMCFCESDRPMIEMVLPSSLDNTLSPPGHHVCLLFTQFTPYKLAGD 155 (269)
Q Consensus 79 ~~~~~r~~~~~~s~s~f~vyl--~~~~-~~~~~~~i~~~~~~~p~~~v~~ps~~Dp~~AP~G~~~l~i~~~~~p~~~~~g 155 (269)
....+.++.+.+. +...+++ +..+ +.. ..+ ..++.|..++. +....|.|+.++..++. .. .
T Consensus 324 ~~~~~ai~~~~~~-~~~kv~l~~~~~~~~~~--~g~--~~~~~~~~~~~-----~~~~~~~~~~vl~~~~~---~~-~-- 387 (495)
T 2vvm_A 324 TERISAMQAGHVS-MCTKVHAEVDNKDMRSW--TGI--AYPFNKLCYAI-----GDGTTPAGNTHLVCFGN---SA-N-- 387 (495)
T ss_dssp HHHHHHHHHCCCC-CCEEEEEEESCGGGGGE--EEE--ECSSCSSCEEE-----EEEECTTSCEEEEEEEC---ST-T--
T ss_pred HHHHHHHHhcCCC-ceeEEEEEECCccCCCc--eeE--ecCCCCcEEEe-----cCCCCCCCCeEEEEEeC---cc-c--
Confidence 6666777776653 4556666 4432 210 001 11233321221 11234566655555432 11 0
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHCCCCCcceEEEEecChhHHHHhhCCCCCccccccccccccccCCCCCCCCCCCCCCCC
Q psy895 156 RDWTEEDKANYATNVFSSIEQYCPGFTQDIVGYEILTPPDLEKEFGLTGGNIFHGALSLNQLLFNRPLPIQGPSSPFTLI 235 (269)
Q Consensus 156 ~~w~~~~K~~~a~~il~~le~~~P~i~~~I~~~~~~TP~t~~~y~~~~~GsiyG~~~~~~q~~~~rp~~~~~~~~~~t~i 235 (269)
.+.+ ++..+.+++.|++.+|+.. .+....+. .|.+.- ...|+ |... .+.+....++ ..++|+
T Consensus 388 -~~~~---~e~~~~~~~~L~~~~~~~~-~~~~~~~~---~W~~dp-~~~g~-y~~~-~~g~~~~~~~-------~l~~p~ 449 (495)
T 2vvm_A 388 -HIQP---DEDVRETLKAVGQLAPGTF-GVKRLVFH---NWVKDE-FAKGA-WFFS-RPGMVSECLQ-------GLREKH 449 (495)
T ss_dssp -CCCT---TTCHHHHHHHHHTTSTTSC-CEEEEEEC---CTTTCT-TTSSS-SCCC-CTTHHHHHHH-------HHHCCB
T ss_pred -cCCC---HHHHHHHHHHHHHhcCCCC-CceEEEEe---EcCCCC-CCCCC-ccCc-CCCcchhhHH-------HHhCcC
Confidence 0111 1234567888888888742 22222211 121110 01233 1110 0111000012 234578
Q ss_pred CcEEEcCCCCCCC--CCccch--HHHHHHHHHHHHhc
Q psy895 236 PHLLLCGSGAHPG--GGVCGA--PGYIAAQMVNRLMR 268 (269)
Q Consensus 236 ~nLyl~G~~~~pG--~Gv~gv--sg~~~a~~il~~~~ 268 (269)
+||||+|.++... +.+.|+ ||..+|++|++.++
T Consensus 450 ~~l~fAGe~t~~~~~g~veGAi~SG~raA~~i~~~l~ 486 (495)
T 2vvm_A 450 GGVVFANSDWALGWRSFIDGAIEEGTRAARVVLEELG 486 (495)
T ss_dssp TTEEECCGGGCSSSTTSHHHHHHHHHHHHHHHHHHHC
T ss_pred CCEEEechhhhcCCceEEEhHHHHHHHHHHHHHHHhc
Confidence 9999999998632 235564 99999999998865
No 17
>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}
Probab=97.95 E-value=4.9e-06 Score=77.91 Aligned_cols=217 Identities=12% Similarity=0.038 Sum_probs=111.3
Q ss_pred hhHHHHHHhc--Ceeeeee---eeeeeceeeEEEecCCCccCccCCCCCCCCCCCCCCCcccccccccccccCcccchhh
Q psy895 7 LKDKEIEKKG--GKRLRKI---TLVIRTRSIYCYECDSWKDRRCLDPFNYSVLPIHQPALNPCNGCCVKMVRNSKTEFES 81 (269)
Q Consensus 7 ~~~~~i~~~g--g~~~~~~---~~~~~~~~i~~~~~~~~~~~~~~~~fi~~~~p~~~~~~~~~~~~~~~Ll~~~~~~~~~ 81 (269)
.|.+.+.+.- ++|..+. .|...+..+ .+++++| ..+|+. +|.++.+ -+. .+|+.+...
T Consensus 237 ~l~~~l~~~l~~~~i~~~~~V~~i~~~~~~~-~v~~~~g-~~~ad~-vV~a~p~-----~~~-----~~ll~~~~~---- 299 (475)
T 3lov_A 237 SLIERLEEVLERSEIRLETPLLAISREDGRY-RLKTDHG-PEYADY-VLLTIPH-----PQV-----VQLLPDAHL---- 299 (475)
T ss_dssp HHHHHHHHHCSSCEEESSCCCCEEEEETTEE-EEECTTC-CEEESE-EEECSCH-----HHH-----HHHCTTSCC----
T ss_pred HHHHHHHhhccCCEEEcCCeeeEEEEeCCEE-EEEECCC-eEECCE-EEECCCH-----HHH-----HHHcCccCH----
Confidence 3555555554 5777764 555555554 4788888 789999 9998665 222 345544322
Q ss_pred hhhhccCCCCCceEEEEe--ecccCCCCCcceEeeeCC-C--CeEEEEcCCCCCCCCCCCCeeEEEEEEecccccCCCCC
Q psy895 82 VRRTCTSKLDISLFMVDH--VCMYEGSGRGHMCFCESD-R--PMIEMVLPSSLDNTLSPPGHHVCLLFTQFTPYKLAGDR 156 (269)
Q Consensus 82 ~~r~~~~~~s~s~f~vyl--~~~~~~~~~~~i~~~~~~-~--p~~~v~~ps~~Dp~~AP~G~~~l~i~~~~~p~~~~~g~ 156 (269)
+.++++++. +...+++ +..++ .......+..+. . +...+...+...+..+|. +..+.+++. .+.. .
T Consensus 300 -~~~~~~~~~-~~~~v~l~~~~~~~-~~~~g~g~l~~~~~~~~~~~~~~~s~~~~~~~p~-~~~l~~~~~-~~~~----~ 370 (475)
T 3lov_A 300 -PELEQLTTH-STATVTMIFDQQQS-LPIEGTGFVVNRRAPYSITACTAIDQKWNHSAPD-HTVLRAFVG-RPGN----D 370 (475)
T ss_dssp -HHHHTCCEE-EEEEEEEEEECCSS-CSSSSSEEEECTTSSCSEEEEEEHHHHCTTTCTT-EEEEEEEEC-BTTB----C
T ss_pred -HHHhcCCCC-eEEEEEEEECCcCC-CCCCCEEEEecCCCCCceEEEEEEcccCCCCCCC-cEEEEEEeC-CCCC----C
Confidence 445555443 3444555 55552 221111111122 2 223333344445666776 554555442 1221 1
Q ss_pred CCcHHHHHHHHHHHHHHHHHHCCCCCcceEEEEecChhHHHH-hhCCCCCccccccccccccccCCCCCCCCCCCCCCCC
Q psy895 157 DWTEEDKANYATNVFSSIEQYCPGFTQDIVGYEILTPPDLEK-EFGLTGGNIFHGALSLNQLLFNRPLPIQGPSSPFTLI 235 (269)
Q Consensus 157 ~w~~~~K~~~a~~il~~le~~~P~i~~~I~~~~~~TP~t~~~-y~~~~~GsiyG~~~~~~q~~~~rp~~~~~~~~~~t~i 235 (269)
.+.+.-.+++.+.+++.|++.++.-. ......+. .|.+ +....-|. ...... .++ ..++++
T Consensus 371 ~~~~~~~e~~~~~~~~~L~~~~g~~~-~p~~~~v~---~w~~a~p~~~~g~----~~~~~~---~~~-------~l~~~~ 432 (475)
T 3lov_A 371 HLVHESDEVLQQAVLQDLEKICGRTL-EPKQVIIS---RLMDGLPAYTVGH----ADRIQR---VRE-------EVLAQY 432 (475)
T ss_dssp GGGGSCHHHHHHHHHHHHHHHHSSCC-CCSEEEEE---EEEEEEECCCTTH----HHHHHH---HHH-------HHHHHS
T ss_pred cccCCCHHHHHHHHHHHHHHHhCCCC-CCeEEEEE---EcccCCCCCCCCh----HHHHHH---HHH-------HHHhhC
Confidence 12212346788999999999876422 11111100 0000 00011111 000000 011 123457
Q ss_pred CcEEEcCCCCCCCCCccch--HHHHHHHHHHHHhc
Q psy895 236 PHLLLCGSGAHPGGGVCGA--PGYIAAQMVNRLMR 268 (269)
Q Consensus 236 ~nLyl~G~~~~pG~Gv~gv--sg~~~a~~il~~~~ 268 (269)
+|||++|++.. |.|+.++ ||..+|++|+++++
T Consensus 433 ~~l~~aG~~~~-g~g~~~a~~sG~~aA~~i~~~l~ 466 (475)
T 3lov_A 433 PGIYLAGLAYD-GVGLPDCVASAKTMIESIELEQS 466 (475)
T ss_dssp TTEEECSTTTS-CSSHHHHHHHHHHHHHHHHHTC-
T ss_pred CCEEEEccCCC-CCCHHHHHHHHHHHHHHHHHHhh
Confidence 89999999886 5788874 99999999998765
No 18
>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*
Probab=97.07 E-value=0.00021 Score=67.66 Aligned_cols=151 Identities=9% Similarity=-0.046 Sum_probs=86.6
Q ss_pred hhhhhHHHHHHhcCeeeee----e-eeeeeceeeEEEecCCCccCccCCCCCCCCCCCCCCCcccccccccccccC--cc
Q psy895 4 LSFLKDKEIEKKGGKRLRK----I-TLVIRTRSIYCYECDSWKDRRCLDPFNYSVLPIHQPALNPCNGCCVKMVRN--SK 76 (269)
Q Consensus 4 ~~~~~~~~i~~~gg~~~~~----~-~~~~~~~~i~~~~~~~~~~~~~~~~fi~~~~p~~~~~~~~~~~~~~~Ll~~--~~ 76 (269)
|.+.|.+.|++. +|..+ + .+..++.. |.+.+++...|+. +|+++.+ -.. .+|+.+ ..
T Consensus 218 l~~~la~~l~~~--~i~~~~~~~V~~I~~~~~~---v~~~~G~~~~ad~-VI~a~p~-----~~~-----~~ll~~~~~~ 281 (484)
T 4dsg_A 218 IYQAIKEKLPSE--KLTFNSGFQAIAIDADAKT---ITFSNGEVVSYDY-LISTVPF-----DNL-----LRMTKGTGFK 281 (484)
T ss_dssp HHHHHHHHSCGG--GEEECGGGCEEEEETTTTE---EEETTSCEEECSE-EEECSCH-----HHH-----HHHEECSSCT
T ss_pred HHHHHHhhhhhC--eEEECCCceeEEEEecCCE---EEECCCCEEECCE-EEECCCH-----HHH-----HHHhhccCCC
Confidence 334455555432 45444 2 44444443 3457788889999 9999765 223 566643 12
Q ss_pred cchhhhhhhccCCCCCceEEEEe--ecccC-CCCCcceEeeeCC--CCeEEEEcCCCCCCCCCCCCeeEEEEEEeccccc
Q psy895 77 TEFESVRRTCTSKLDISLFMVDH--VCMYE-GSGRGHMCFCESD--RPMIEMVLPSSLDNTLSPPGHHVCLLFTQFTPYK 151 (269)
Q Consensus 77 ~~~~~~~r~~~~~~s~s~f~vyl--~~~~~-~~~~~~i~~~~~~--~p~~~v~~ps~~Dp~~AP~G~~~l~i~~~~~p~~ 151 (269)
.++...+.+++++++ +...+.+ +...+ ++... .|+..|+ .|..-++.++..+|.++|+|++++.+... .. +
T Consensus 282 ~~~~~~~~l~~l~y~-s~~~v~l~~~~~~~~~~~~~-~~i~vp~~~~~~~ri~~~s~~~p~~ap~g~~~l~~e~~-~~-~ 357 (484)
T 4dsg_A 282 GYDEWPAIADKMVYS-STNVIGIGVKGTPPPHLKTA-CWLYFPEDTSPFYRATVFSNYSKYNVPEGHWSLMLEVS-ES-K 357 (484)
T ss_dssp TGGGHHHHHHHCCEE-EEEEEEEEEESCCCGGGTTC-CEEECCSTTCSCSEEECGGGTCGGGSCTTEEEEEEEEE-EB-T
T ss_pred CCHHHHHHHhCCCcC-ceEEEEEEEcCCCcccCCCC-eEEEEEcCCCeEEEEEeecCCCcccCCCCeEEEEEEEe-cC-c
Confidence 455566667777774 4444544 44322 22211 2222243 36667888889999999999988777644 11 1
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHHHHHCCCC
Q psy895 152 LAGDRDWTEEDKANYATNVFSSIEQYCPGF 181 (269)
Q Consensus 152 ~~~g~~w~~~~K~~~a~~il~~le~~~P~i 181 (269)
.|. .-.+++.+..++.|++. .++
T Consensus 358 -----~~~-~~d~~l~~~a~~~L~~~-~~~ 380 (484)
T 4dsg_A 358 -----YKP-VNHSTLIEDCIVGCLAS-NLL 380 (484)
T ss_dssp -----TBC-CCTTSHHHHHHHHHHHT-TSC
T ss_pred -----CCc-CCHHHHHHHHHHHHHHc-CCC
Confidence 121 11245778888888886 344
No 19
>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*
Probab=96.88 E-value=0.01 Score=54.29 Aligned_cols=207 Identities=9% Similarity=-0.014 Sum_probs=102.6
Q ss_pred hhHHHHHHhcCeeeeee---eeeeeceeeEEEecCCCccCccCCCCCCCCCCCCCCCccccccccccccc-Ccccchhhh
Q psy895 7 LKDKEIEKKGGKRLRKI---TLVIRTRSIYCYECDSWKDRRCLDPFNYSVLPIHQPALNPCNGCCVKMVR-NSKTEFESV 82 (269)
Q Consensus 7 ~~~~~i~~~gg~~~~~~---~~~~~~~~i~~~~~~~~~~~~~~~~fi~~~~p~~~~~~~~~~~~~~~Ll~-~~~~~~~~~ 82 (269)
.|++.+.+.+|+|+.+. .+..++..+. +.|++++.++|+. +|.++.+- + ++.+. ...++....
T Consensus 208 ~l~~~~~~~~g~i~~~~~V~~i~~~~~~v~-v~~~~g~~~~ad~-vi~a~~~~-----~------l~~i~~~p~l~~~~~ 274 (431)
T 3k7m_X 208 DLVDAMSQEIPEIRLQTVVTGIDQSGDVVN-VTVKDGHAFQAHS-VIVATPMN-----T------WRRIVFTPALPERRR 274 (431)
T ss_dssp HHHHHHHTTCSCEESSCCEEEEECSSSSEE-EEETTSCCEEEEE-EEECSCGG-----G------GGGSEEESCCCHHHH
T ss_pred HHHHHHHhhCCceEeCCEEEEEEEcCCeEE-EEECCCCEEEeCE-EEEecCcc-----h------HhheeeCCCCCHHHH
Confidence 45555555555877664 5555555554 8888898899999 88886541 1 22221 233444444
Q ss_pred hhhccCCCCCceEEEEe--ecccCCCCCcceEee-eCCCCeEEEEcCCCCCCCCCCCCeeEEEEEEecccccCCCCCCCc
Q psy895 83 RRTCTSKLDISLFMVDH--VCMYEGSGRGHMCFC-ESDRPMIEMVLPSSLDNTLSPPGHHVCLLFTQFTPYKLAGDRDWT 159 (269)
Q Consensus 83 ~r~~~~~~s~s~f~vyl--~~~~~~~~~~~i~~~-~~~~p~~~v~~ps~~Dp~~AP~G~~~l~i~~~~~p~~~~~g~~w~ 159 (269)
+.++.+....+ ..+++ +..+++ ++.. .+....++-..+. ..+...+..+.. -+. ++
T Consensus 275 ~~~~~~~~~~~-~kv~~~~~~~~~~-----i~~~~d~~~~~~~~~~~~-------~~~~~~l~~~~~-g~~-------~~ 333 (431)
T 3k7m_X 275 SVIEEGHGGQG-LKILIHVRGAEAG-----IECVGDGIFPTLYDYCEV-------SESERLLVAFTD-SGS-------FD 333 (431)
T ss_dssp HHHHHCCCCCE-EEEEEEEESCCTT-----EEEEBSSSSSEEEEEEEC-------SSSEEEEEEEEE-TTT-------CC
T ss_pred HHHHhCCCcce-EEEEEEECCCCcC-----ceEcCCCCEEEEEeCcCC-------CCCCeEEEEEec-ccc-------CC
Confidence 55666554333 55555 555543 2211 1112233332221 123333333322 111 11
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCcceEEEEecChhHHHHhhCCCCCccccccccccccccCCCCCCCCCCCCCCCCCcEE
Q psy895 160 EEDKANYATNVFSSIEQYCPGFTQDIVGYEILTPPDLEKEFGLTGGNIFHGALSLNQLLFNRPLPIQGPSSPFTLIPHLL 239 (269)
Q Consensus 160 ~~~K~~~a~~il~~le~~~P~i~~~I~~~~~~TP~t~~~y~~~~~GsiyG~~~~~~q~~~~rp~~~~~~~~~~t~i~nLy 239 (269)
. .. .+++.+.|++.+|++. ..... . ..|...- ...|+ |.+. .+.+...+++ ..+.|+.+||
T Consensus 334 ~-~~---~~~~~~~l~~~~~~~~--~~~~~-~--~~W~~d~-~~~G~-~~~~-~~g~~~~~~~-------~l~~p~g~~~ 394 (431)
T 3k7m_X 334 P-TD---IGAVKDAVLYYLPEVE--VLGID-Y--HDWIADP-LFEGP-WVAP-RVGQFSRVHK-------ELGEPAGRIH 394 (431)
T ss_dssp T-TC---HHHHHHHHHHHCTTCE--EEEEE-C--CCTTTCT-TTSSS-SCCC-CTTTTTTSSG-------GGGSCBTTEE
T ss_pred C-CC---HHHHHHHHHHhcCCCC--ccEeE-e--cccCCCC-CCCCC-CCCc-CCCCCcccHH-------HHhCCCCcEE
Confidence 1 10 1346677888899764 11111 0 1222211 12343 2221 1222222233 3456789999
Q ss_pred EcCCCCCC-CCC-ccch--HHHHHHHHHHHH
Q psy895 240 LCGSGAHP-GGG-VCGA--PGYIAAQMVNRL 266 (269)
Q Consensus 240 l~G~~~~p-G~G-v~gv--sg~~~a~~il~~ 266 (269)
|+|..+.. -+| +.|+ ||..||++|+..
T Consensus 395 fAGe~t~~~~~g~~~GA~~sg~raa~~i~~~ 425 (431)
T 3k7m_X 395 FVGSDVSLEFPGYIEGALETAECAVNAILHS 425 (431)
T ss_dssp ECSGGGCSSSTTSHHHHHHHHHHHHHHHHHC
T ss_pred EEehhhhccCCeEehHHHHHHHHHHHHHHhh
Confidence 99955542 234 4464 999999999864
No 20
>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*
Probab=96.86 E-value=0.00011 Score=69.06 Aligned_cols=165 Identities=8% Similarity=-0.061 Sum_probs=90.3
Q ss_pred hhhhhhHHHHHHhcCeeeeee---eeeeeceeeEEEecCCCccCccCCCCCCCCCCCCCCCcccccccccccccCcccch
Q psy895 3 LLSFLKDKEIEKKGGKRLRKI---TLVIRTRSIYCYECDSWKDRRCLDPFNYSVLPIHQPALNPCNGCCVKMVRNSKTEF 79 (269)
Q Consensus 3 ~~~~~~~~~i~~~gg~~~~~~---~~~~~~~~i~~~~~~~~~~~~~~~~fi~~~~p~~~~~~~~~~~~~~~Ll~~~~~~~ 79 (269)
-|.+.|.+.|++.||++..++ ++..+++. +.+.+|+...|+. +|+++.. -. +.++++++
T Consensus 223 ~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~~---v~~~~G~~~~ad~-vI~t~P~-----~~-----l~~~l~~~---- 284 (513)
T 4gde_A 223 GIWIAVANTLPKEKTRFGEKGKVTKVNANNKT---VTLQDGTTIGYKK-LVSTMAV-----DF-----LAEAMNDQ---- 284 (513)
T ss_dssp HHHHHHHHTSCGGGEEESGGGCEEEEETTTTE---EEETTSCEEEEEE-EEECSCH-----HH-----HHHHTTCH----
T ss_pred HHHHHHHHHHHhcCeeeecceEEEEEEccCCE---EEEcCCCEEECCE-EEECCCH-----HH-----HHHhcCch----
Confidence 356788888999999998875 55566664 4578999999999 9999543 22 25566543
Q ss_pred hhhhhhccCCCCCceEEEEe--ecccC-CCCCcceEeeeC--CCCeEEEEcCCCCCCCCCCCCeeEEEEEEecccccC--
Q psy895 80 ESVRRTCTSKLDISLFMVDH--VCMYE-GSGRGHMCFCES--DRPMIEMVLPSSLDNTLSPPGHHVCLLFTQFTPYKL-- 152 (269)
Q Consensus 80 ~~~~r~~~~~~s~s~f~vyl--~~~~~-~~~~~~i~~~~~--~~p~~~v~~ps~~Dp~~AP~G~~~l~i~~~~~p~~~-- 152 (269)
........+++ .+..++++ +...+ .... ..|+..+ +.|+--+..++...|..+|+++..+...++ .....
T Consensus 285 ~~~~~~~~l~y-~~~~~v~l~~~~~~~~~~~~-~~~~y~~~~~~~f~Ri~~~~n~sp~~~p~~~~~~~~~~~-~~~~~~~ 361 (513)
T 4gde_A 285 ELVGLTKQLFY-SSTHVIGVGVRGSRPERIGD-KCWLYFPEDNCPFYRATIFSNYSPYNQPEASAALPTMQL-ADGSRPQ 361 (513)
T ss_dssp HHHHHHTTCCE-EEEEEEEEEEESSCCTTTTT-CCEEECCSTTCSCSEEECGGGTCGGGSCCTTCCEECCEE-TTSCCCS
T ss_pred hhHhhhhcccC-CceEEEEEEEeccccccccc-cceeeccCCCCceeEEEecCCCCcccCCCCCceEEEEEe-ccCCCcc
Confidence 22233444444 34445555 33332 2222 2222222 234434555566666666666655443332 11100
Q ss_pred ----------------CCCCCCcHHHHHHHHHHHHHHHHHHCC-CCCcceEEEE
Q psy895 153 ----------------AGDRDWTEEDKANYATNVFSSIEQYCP-GFTQDIVGYE 189 (269)
Q Consensus 153 ----------------~~g~~w~~~~K~~~a~~il~~le~~~P-~i~~~I~~~~ 189 (269)
....-|. .-.+++.+.+++.|++..+ .-.+.|+...
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~-~~de~l~~~~~~~L~~~~~i~~~~~i~~~~ 414 (513)
T 4gde_A 362 STEAKEGPYWSIMLEVSESSMKP-VNQETILADCIQGLVNTEMLKPTDEIVSTY 414 (513)
T ss_dssp CCSEECCCEEEEEEEEEEBTTBC-CCTTTHHHHHHHHHHHTTSSCTTCEEEEEE
T ss_pred cccCCcceEEEEEecccchhccC-CCHHHHHHHHHHHHHHhcCCCCccceEEEE
Confidence 0001111 1235678888888888754 2345555443
No 21
>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*
Probab=96.76 E-value=0.004 Score=61.18 Aligned_cols=118 Identities=11% Similarity=-0.052 Sum_probs=74.7
Q ss_pred chhhhhhHHHHHHhcCeeeeee---eeeeec--eeeEEEecCCCccCccCCCCCCCCCCCCCCCcccccccccccccCcc
Q psy895 2 TLLSFLKDKEIEKKGGKRLRKI---TLVIRT--RSIYCYECDSWKDRRCLDPFNYSVLPIHQPALNPCNGCCVKMVRNSK 76 (269)
Q Consensus 2 ~~~~~~~~~~i~~~gg~~~~~~---~~~~~~--~~i~~~~~~~~~~~~~~~~fi~~~~p~~~~~~~~~~~~~~~Ll~~~~ 76 (269)
--|+..|.+.++++||+++.++ +|++++ ++++.+.+++|+..+|+. +|++... ++..
T Consensus 378 g~L~qaL~r~~~~~Gg~i~l~~~V~~I~~~~~~g~v~gV~~~~Ge~i~A~~-VVs~~~~----------------lp~~- 439 (650)
T 1vg0_A 378 GELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKH-FIIEDSY----------------LSEN- 439 (650)
T ss_dssp THHHHHHHHHHHHTTCEEESSCCEEEEEEETTTCCEEEEEETTSCEEECSE-EEEEGGG----------------BCTT-
T ss_pred hHHHHHHHHHHHHcCCEEEeCCEeeEEEEeCCCCeEEEEEeCCCCEEEcCE-EEEChhh----------------cCHh-
Confidence 4578899999999999998874 677777 778889888899999999 8885221 2211
Q ss_pred cchhhhhhhccCCCC-CceEEEEeecccCCCC-C-c-ceEeeeC----CCCeEEEEcCCCCCCCCCCCCeeEEEEEEe
Q psy895 77 TEFESVRRTCTSKLD-ISLFMVDHVCMYEGSG-R-G-HMCFCES----DRPMIEMVLPSSLDNTLSPPGHHVCLLFTQ 146 (269)
Q Consensus 77 ~~~~~~~r~~~~~~s-~s~f~vyl~~~~~~~~-~-~-~i~~~~~----~~p~~~v~~ps~~Dp~~AP~G~~~l~i~~~ 146 (269)
..+++ ..+ .+-..+.++...++.. + . .+. .+| ..+.+++.+++. |++.||+|++++++.+.
T Consensus 440 ----~~~~~---~~~~v~R~i~i~~~pi~~~~~~~~~~~i-iiP~~~g~~~~V~i~~~Ss-~~~~cP~G~~Vv~lst~ 508 (650)
T 1vg0_A 440 ----TCSRV---QYRQISRAVLITDGSVLRTDADQQVSIL-TVPAEEPGSFAVRVIELCS-STMTCMKGTYLVHLTCM 508 (650)
T ss_dssp ----TTTTC---CCEEEEEEEEEESSCSSCCSCCCCCEEE-EECCSSTTSCCEEEEEECG-GGTSSCTTCEEEEEEEE
T ss_pred ----Hhccc---cccceEEEEEEecCCCCCcCCCcceEEE-EccCccCCCCCEEEEEeCC-CCCCCCCCCEEEEEEee
Confidence 11111 111 1111122233333211 1 1 111 123 346788888877 88999999999988765
No 22
>1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae} PDB: 3kkj_A*
Probab=96.61 E-value=0.021 Score=50.06 Aligned_cols=207 Identities=8% Similarity=0.011 Sum_probs=102.3
Q ss_pred hHHHHHHhcCeeeeee---eeeeeceeeEEEecCCCccCc-cCCCCCCCCCCCCCCCcccccccccccccCcccchhhhh
Q psy895 8 KDKEIEKKGGKRLRKI---TLVIRTRSIYCYECDSWKDRR-CLDPFNYSVLPIHQPALNPCNGCCVKMVRNSKTEFESVR 83 (269)
Q Consensus 8 ~~~~i~~~gg~~~~~~---~~~~~~~~i~~~~~~~~~~~~-~~~~fi~~~~p~~~~~~~~~~~~~~~Ll~~~~~~~~~~~ 83 (269)
|.+.+.+ |.+++.+. .++..+..+. +++++++... |+. +|.+.-+ ... .+++.. .+....
T Consensus 112 l~~~l~~-g~~i~~~~~v~~i~~~~~~~~-v~~~~g~~~~~a~~-vV~a~g~-----~~~-----~~~~~~---~~~l~~ 175 (336)
T 1yvv_A 112 ITRAMRG-DMPVSFSCRITEVFRGEEHWN-LLDAEGQNHGPFSH-VIIATPA-----PQA-----STLLAA---APKLAS 175 (336)
T ss_dssp HHHHHHT-TCCEECSCCEEEEEECSSCEE-EEETTSCEEEEESE-EEECSCH-----HHH-----GGGGTT---CHHHHH
T ss_pred HHHHHHc-cCcEEecCEEEEEEEeCCEEE-EEeCCCcCccccCE-EEEcCCH-----HHH-----HHhhcc---CHHHHH
Confidence 4455544 77877764 4444444443 5677776654 777 6666333 111 344432 244445
Q ss_pred hhccCCCCCceEEEEe--ecccCCCCCcceEeeeCCCCeEEEEcCCCCCCCCCCCCeeEEEEEEecccccCCCCCCCcHH
Q psy895 84 RTCTSKLDISLFMVDH--VCMYEGSGRGHMCFCESDRPMIEMVLPSSLDNTLSPPGHHVCLLFTQFTPYKLAGDRDWTEE 161 (269)
Q Consensus 84 r~~~~~~s~s~f~vyl--~~~~~~~~~~~i~~~~~~~p~~~v~~ps~~Dp~~AP~G~~~l~i~~~~~p~~~~~g~~w~~~ 161 (269)
.+..+++. +..++++ +..+. ..+.... .++.|.-++...+.. |...+.|. .+.+... ..+. . .+.+.
T Consensus 176 ~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~l~~~~~~-p~~~~~~~-~~v~~~~-~~~~-~---~~~~~ 244 (336)
T 1yvv_A 176 VVAGVKMD-PTWAVALAFETPLQ-TPMQGCF--VQDSPLDWLARNRSK-PERDDTLD-TWILHAT-SQWS-R---QNLDA 244 (336)
T ss_dssp HHTTCCEE-EEEEEEEEESSCCS-CCCCEEE--ECSSSEEEEEEGGGS-TTCCCSSE-EEEEEEC-HHHH-H---HTTTS
T ss_pred HHhhcCcc-ceeEEEEEecCCCC-CCCCeEE--eCCCceeEEEecCcC-CCCCCCCc-EEEEEeC-HHHH-H---HHHhC
Confidence 66666665 6666666 33322 1222221 245565444333222 33333222 3333322 1111 0 01111
Q ss_pred HHHHHHHHHHHHHHHHCCC-CCcc--eEEEEecChhHHHHhhCCCCCccccccccccccccCCCCCCCCCCCCCCCCCcE
Q psy895 162 DKANYATNVFSSIEQYCPG-FTQD--IVGYEILTPPDLEKEFGLTGGNIFHGALSLNQLLFNRPLPIQGPSSPFTLIPHL 238 (269)
Q Consensus 162 ~K~~~a~~il~~le~~~P~-i~~~--I~~~~~~TP~t~~~y~~~~~GsiyG~~~~~~q~~~~rp~~~~~~~~~~t~i~nL 238 (269)
-.+++.+++++.+.+.++. +.+- +....-. |.+..... .+. ....+.++|
T Consensus 245 ~~~~~~~~l~~~l~~~lg~~~~~p~~~~~~rw~----------------~a~~~~~~-----~~~------~~~~~~~rl 297 (336)
T 1yvv_A 245 SREQVIEHLHGAFAELIDCTMPAPVFSLAHRWL----------------YARPAGAH-----EWG------ALSDADLGI 297 (336)
T ss_dssp CHHHHHHHHHHHHHTTCSSCCCCCSEEEEEEEE----------------EEEESSCC-----CCS------CEEETTTTE
T ss_pred CHHHHHHHHHHHHHHHhCCCCCCCcEEEccccC----------------ccCCCCCC-----CCC------eeecCCCCE
Confidence 2356788888888887652 2111 1111100 00000000 000 111235899
Q ss_pred EEcCCCCCCCCCccch--HHHHHHHHHHHHhcC
Q psy895 239 LLCGSGAHPGGGVCGA--PGYIAAQMVNRLMRK 269 (269)
Q Consensus 239 yl~G~~~~pG~Gv~gv--sg~~~a~~il~~~~~ 269 (269)
+|+|++++ |+|+.+. ||..+|++|.+.+.|
T Consensus 298 ~laGDa~~-g~gv~~a~~sg~~lA~~l~~~~~~ 329 (336)
T 1yvv_A 298 YVCGDWCL-SGRVEGAWLSGQEAARRLLEHLQL 329 (336)
T ss_dssp EECCGGGT-TSSHHHHHHHHHHHHHHHHHHTTC
T ss_pred EEEecCCC-CCCHHHHHHHHHHHHHHHHHHhhh
Confidence 99999997 5688764 999999999988764
No 23
>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*
Probab=96.22 E-value=0.0024 Score=58.46 Aligned_cols=29 Identities=7% Similarity=-0.229 Sum_probs=22.7
Q ss_pred CCCcEEEcCCCCCCCCCcc-c-h-HHHHHHHHHH
Q psy895 234 LIPHLLLCGSGAHPGGGVC-G-A-PGYIAAQMVN 264 (269)
Q Consensus 234 ~i~nLyl~G~~~~pG~Gv~-g-v-sg~~~a~~il 264 (269)
..+||||||+++. .|+. + + ||..+|++++
T Consensus 392 ~~~~l~~aG~~~~--~g~~e~a~~Sg~~aA~~~l 423 (424)
T 2b9w_A 392 GRRNTFYAGEIMS--FGNFDEVCHYSKDLVTRFF 423 (424)
T ss_dssp TGGGEEECSGGGS--CSSHHHHHHHHHHHHHHHT
T ss_pred CCCCceEeccccc--cccHHHHHHHHHHHHHHhc
Confidence 4689999999884 4665 2 3 9999999885
No 24
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=93.18 E-value=0.043 Score=44.62 Aligned_cols=37 Identities=24% Similarity=0.256 Sum_probs=30.3
Q ss_pred CCCCCCcEEEcCCCCCCCCCccch--HHHHHHHHHHHHhc
Q psy895 231 PFTLIPHLLLCGSGAHPGGGVCGA--PGYIAAQMVNRLMR 268 (269)
Q Consensus 231 ~~t~i~nLyl~G~~~~pG~Gv~gv--sg~~~a~~il~~~~ 268 (269)
..+..+|+|++||++. |+||.++ ||+.+|++|++.|+
T Consensus 290 ~~~~~~~v~l~GDa~~-g~gv~~A~~sG~~aA~~I~~~L~ 328 (336)
T 3kkj_A 290 LSDADLGIYVCGDWCL-SGRVEGAWLSGQEAARRLLEHLQ 328 (336)
T ss_dssp EEETTTTEEECCGGGT-TSSHHHHHHHHHHHHHHHHHHTT
T ss_pred eeeCCCCEEEEecccC-CcCHHHHHHHHHHHHHHHHHHhh
Confidence 3456789999999986 5688763 99999999998874
No 25
>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A
Probab=92.83 E-value=0.092 Score=51.42 Aligned_cols=37 Identities=24% Similarity=0.273 Sum_probs=28.1
Q ss_pred CCCCCcEEEcCCCCCCCC-C-ccch--HHHHHHHHHHHHhc
Q psy895 232 FTLIPHLLLCGSGAHPGG-G-VCGA--PGYIAAQMVNRLMR 268 (269)
Q Consensus 232 ~t~i~nLyl~G~~~~pG~-G-v~gv--sg~~~a~~il~~~~ 268 (269)
+++.++|||+|..+...+ | +.|+ ||+.+|++|++.++
T Consensus 619 ~~~~grl~FAGe~ts~~~~g~v~GAi~SG~raA~~i~~~~~ 659 (662)
T 2z3y_A 619 PQPIPRLFFAGEHTIRNYPATVHGALLSGLREAGRIADQFL 659 (662)
T ss_dssp --CCCCEEECSGGGCTTSTTSHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCCCcEEEEeccccCCCCcCHHHHHHHHHHHHHHHHHHcc
Confidence 557899999999997522 3 4564 99999999998765
No 26
>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*
Probab=92.61 E-value=0.045 Score=51.63 Aligned_cols=35 Identities=23% Similarity=0.373 Sum_probs=27.4
Q ss_pred CCCcEEEcCCCCCC-CCCc-cch--HHHHHHHHHHHHhc
Q psy895 234 LIPHLLLCGSGAHP-GGGV-CGA--PGYIAAQMVNRLMR 268 (269)
Q Consensus 234 ~i~nLyl~G~~~~p-G~Gv-~gv--sg~~~a~~il~~~~ 268 (269)
+..+|||+|..+.+ ..|. .|+ ||..+|++|++.++
T Consensus 470 ~~~rl~FAGe~ts~~~~g~v~GA~~SG~raA~~i~~~~~ 508 (516)
T 1rsg_A 470 QDSRIRFAGEHTIMDGAGCAYGAWESGRREATRISDLLK 508 (516)
T ss_dssp SSSSEEECSTTSCSTTBTSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEeccccccCCCccchhHHHHHHHHHHHHHHHhh
Confidence 46889999999975 3353 464 99999999998754
No 27
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A
Probab=92.58 E-value=0.047 Score=55.27 Aligned_cols=38 Identities=24% Similarity=0.268 Sum_probs=29.1
Q ss_pred CCCCCCcEEEcCCCCCCCC-C-ccch--HHHHHHHHHHHHhc
Q psy895 231 PFTLIPHLLLCGSGAHPGG-G-VCGA--PGYIAAQMVNRLMR 268 (269)
Q Consensus 231 ~~t~i~nLyl~G~~~~pG~-G-v~gv--sg~~~a~~il~~~~ 268 (269)
.+.+..+|||+|..+...+ | +.|+ ||+.+|++|++.+.
T Consensus 789 ~~~~~grL~FAGE~Ts~~~~gtveGAi~SG~RAA~~Il~~l~ 830 (852)
T 2xag_A 789 APQPIPRLFFAGEHTIRNYPATVHGALLSGLREAGRIADQFL 830 (852)
T ss_dssp CCCCCCCEEECSGGGCTTSTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCcEEEEehhHhCCCCcCHHHHHHHHHHHHHHHHHHhh
Confidence 3557889999999997422 3 4564 99999999998763
No 28
>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*
Probab=92.22 E-value=1.7 Score=43.03 Aligned_cols=35 Identities=17% Similarity=0.083 Sum_probs=26.7
Q ss_pred CCCcEEEcCCCCCCCCCc-cch--HHHHHHHHHHHHhc
Q psy895 234 LIPHLLLCGSGAHPGGGV-CGA--PGYIAAQMVNRLMR 268 (269)
Q Consensus 234 ~i~nLyl~G~~~~pG~Gv-~gv--sg~~~a~~il~~~~ 268 (269)
+-.++||+|+.+..-+|. -|+ ||+.|+..|+..++
T Consensus 643 ~~gri~fAGe~~S~~~GWieGAl~Sa~~Aa~~i~~~~~ 680 (721)
T 3ayj_A 643 LDNRFFIASDSYSHLGGWLEGAFMSALNAVAGLIVRAN 680 (721)
T ss_dssp TCCCEEECSGGGSSCTTSHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCEEEeehhhccCCceehHHHHHHHHHHHHHHHHhc
Confidence 357899999999643564 454 99999999988754
No 29
>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}
Probab=87.28 E-value=0.23 Score=46.88 Aligned_cols=52 Identities=8% Similarity=-0.040 Sum_probs=41.9
Q ss_pred hhhhhhHHHHHHhcCeeeeee---eeee-eceeeEEEecCCCccCccCCCCCCCCCC
Q psy895 3 LLSFLKDKEIEKKGGKRLRKI---TLVI-RTRSIYCYECDSWKDRRCLDPFNYSVLP 55 (269)
Q Consensus 3 ~~~~~~~~~i~~~gg~~~~~~---~~~~-~~~~i~~~~~~~~~~~~~~~~fi~~~~p 55 (269)
-|...|.+.++++||+++.+. +++. ++.++..|++++|+..+|+. +|+++..
T Consensus 257 ~L~~aL~r~~~~~Gg~i~l~t~V~~I~~d~~g~v~gV~~~~G~~i~Ad~-VI~a~~~ 312 (475)
T 3p1w_A 257 GIPEGFSRMCAINGGTFMLNKNVVDFVFDDDNKVCGIKSSDGEIAYCDK-VICDPSY 312 (475)
T ss_dssp HHHHHHHHHHHHC--CEESSCCEEEEEECTTSCEEEEEETTSCEEEEEE-EEECGGG
T ss_pred HHHHHHHHHHHHcCCEEEeCCeEEEEEEecCCeEEEEEECCCcEEECCE-EEECCCc
Confidence 467889999999999998885 6666 66789999999999899999 9988643
No 30
>2e1m_C L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}
Probab=86.13 E-value=0.16 Score=41.50 Aligned_cols=37 Identities=19% Similarity=0.073 Sum_probs=28.3
Q ss_pred CCCCCcEEEcCCCCCCCCC-ccch--HHHHHHHHHHHHhc
Q psy895 232 FTLIPHLLLCGSGAHPGGG-VCGA--PGYIAAQMVNRLMR 268 (269)
Q Consensus 232 ~t~i~nLyl~G~~~~pG~G-v~gv--sg~~~a~~il~~~~ 268 (269)
+.|..+|||+|..+...+| +.|+ ||..+|++|+..++
T Consensus 114 ~~p~grl~FAGe~ts~~~g~~eGAl~SG~raA~~i~~~l~ 153 (181)
T 2e1m_C 114 VRPEGPVYFAGEHVSLKHAWIEGAVETAVRAAIAVNEAPV 153 (181)
T ss_dssp HSCBTTEEECSGGGTTSTTSHHHHHHHHHHHHHHHHTCCC
T ss_pred hCCCCcEEEEEHHHcCCccCHHHHHHHHHHHHHHHHHHhc
Confidence 3457899999999874334 4464 99999999998754
No 31
>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7
Probab=75.64 E-value=1.6 Score=36.30 Aligned_cols=35 Identities=14% Similarity=0.089 Sum_probs=28.2
Q ss_pred CCCCCcEEEcCCCCCCCCCccch---HHHHHHHHHHHHhc
Q psy895 232 FTLIPHLLLCGSGAHPGGGVCGA---PGYIAAQMVNRLMR 268 (269)
Q Consensus 232 ~t~i~nLyl~G~~~~pG~Gv~gv---sg~~~a~~il~~~~ 268 (269)
.|.+||||.+|+.+ +.|+.+. +|+.+|+.|+.+++
T Consensus 195 ~t~~p~iya~G~~a--~~g~~~~~~~~g~~~a~~i~~~l~ 232 (232)
T 2cul_A 195 LKRLEGLYAVGLCV--REGDYARMSEEGKRLAEHLLHELG 232 (232)
T ss_dssp ETTSBSEEECGGGT--SCCCHHHHHHHHHHHHHHHHHHC-
T ss_pred ccccccceeeeecc--cCccHHHHHHHHHHHHHHHHhhcC
Confidence 35799999999999 5666542 99999999998763
No 32
>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}
Probab=74.43 E-value=1.8 Score=41.49 Aligned_cols=48 Identities=10% Similarity=0.000 Sum_probs=38.1
Q ss_pred hhhhhHHHHHHhcCeeeeee---eeeeeceeeEEEecCCCccCccCCCCCCC
Q psy895 4 LSFLKDKEIEKKGGKRLRKI---TLVIRTRSIYCYECDSWKDRRCLDPFNYS 52 (269)
Q Consensus 4 ~~~~~~~~i~~~gg~~~~~~---~~~~~~~~i~~~~~~~~~~~~~~~~fi~~ 52 (269)
+...|.+.++++|++++.+. .++.++.++..+.+++++...|+. +|-+
T Consensus 222 l~~~L~~~l~~~Gv~I~~~t~V~~I~~~~~~v~gV~l~~G~~i~Ad~-VVlA 272 (549)
T 3nlc_A 222 MIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSNGEEIKSRH-VVLA 272 (549)
T ss_dssp HHHHHHHHHHHTTCEEESSCCEEEEEESSSBEEEEEETTSCEEECSC-EEEC
T ss_pred HHHHHHHHHHhcCCEEEeCCEEEEEEEeCCEEEEEEECCCCEEECCE-EEEC
Confidence 44567888999999999885 666667778899999998888888 5544
No 33
>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}
Probab=69.68 E-value=1.6 Score=38.05 Aligned_cols=37 Identities=19% Similarity=0.319 Sum_probs=26.7
Q ss_pred CCCCCCcEEEcCCCCC-----CCCC-ccc--h-HHHHHHHHHHHHh
Q psy895 231 PFTLIPHLLLCGSGAH-----PGGG-VCG--A-PGYIAAQMVNRLM 267 (269)
Q Consensus 231 ~~t~i~nLyl~G~~~~-----pG~G-v~g--v-sg~~~a~~il~~~ 267 (269)
.+|.+||+|.+|+.+. ++.| +.| + ||+.||+.|++.|
T Consensus 279 ~~t~vpGv~aaGDaa~~v~g~~rmGp~~g~mi~SG~~AAe~I~~~l 324 (326)
T 3fpz_A 279 AYAGVDNMYFAGMEVAELDGLNRMGPTFGAMALSGVHAAEQILKHF 324 (326)
T ss_dssp ECTTSBTEEECTHHHHHHHTCCBCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred eEECCCCEEEEchHhccccCCCcCchHHHHHHHHHHHHHHHHHHHh
Confidence 4677999999998642 1123 332 2 9999999999876
No 34
>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*
Probab=67.26 E-value=2.6 Score=39.13 Aligned_cols=35 Identities=23% Similarity=0.056 Sum_probs=21.9
Q ss_pred CCCCC-CCcEEEcCCCCCCCCCcc-----c-hHHHHHHHHHHH
Q psy895 230 SPFTL-IPHLLLCGSGAHPGGGVC-----G-APGYIAAQMVNR 265 (269)
Q Consensus 230 ~~~t~-i~nLyl~G~~~~pG~Gv~-----g-vsg~~~a~~il~ 265 (269)
...|+ ++|||++||-+-. .|.. | +.|+++|..+.+
T Consensus 322 tle~k~~~~Lf~AGqi~G~-~Gy~eAaa~Gl~AG~naa~~~~g 363 (443)
T 3g5s_A 322 TLEFREAEGLYAAGVLAGV-EGYLESAATGFLAGLNAARKALG 363 (443)
T ss_dssp TSEETTEEEEEECGGGGTB-CSHHHHHHHHHHHHHHHHHHHTT
T ss_pred hceecCCCCEEECcccccc-HHHHHHHHhHHHHHHHHHHHhcC
Confidence 45665 9999999998832 2332 1 255666665543
No 35
>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*
Probab=66.93 E-value=3 Score=35.43 Aligned_cols=37 Identities=22% Similarity=0.222 Sum_probs=26.3
Q ss_pred CCCCCCcEEEcCCCCCC---CCCcc-ch-HHHHHHHHHHHHh
Q psy895 231 PFTLIPHLLLCGSGAHP---GGGVC-GA-PGYIAAQMVNRLM 267 (269)
Q Consensus 231 ~~t~i~nLyl~G~~~~p---G~Gv~-gv-sg~~~a~~il~~~ 267 (269)
.+|.++|+|.+||.+.. ...+. .+ .|..+|..|...+
T Consensus 275 ~~t~~~~vya~GD~~~~~~~~~~~~~A~~~g~~aa~~i~~~l 316 (323)
T 3f8d_A 275 MRTSVPGVFAAGDCTSAWLGFRQVITAVAQGAVAATSAYRYV 316 (323)
T ss_dssp CBCSSTTEEECSTTBSTTTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred ceecCCCEEEcceecCCCCcccceeehhhHHHHHHHHHHHHH
Confidence 46789999999999862 11222 22 7888888887765
No 36
>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*
Probab=66.87 E-value=5.2 Score=39.01 Aligned_cols=50 Identities=4% Similarity=-0.057 Sum_probs=36.7
Q ss_pred hhhhhHHHHHHh-cCeeeeee--eeeeeceeeEEEecCCCccCccCCCCCCCCC
Q psy895 4 LSFLKDKEIEKK-GGKRLRKI--TLVIRTRSIYCYECDSWKDRRCLDPFNYSVL 54 (269)
Q Consensus 4 ~~~~~~~~i~~~-gg~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~fi~~~~ 54 (269)
+...|.+.++++ |.+++... .++.++.++..|.+.++..++|+. +|-++=
T Consensus 125 ~~~~L~~~Le~~~GVeI~~~~Vt~L~~e~g~V~GV~t~dG~~i~Ada-VVLATG 177 (637)
T 2zxi_A 125 YREYMKKVCENQENLYIKQEEVVDIIVKNNQVVGVRTNLGVEYKTKA-VVVTTG 177 (637)
T ss_dssp HHHHHHHHHHTCTTEEEEESCEEEEEESSSBEEEEEETTSCEEECSE-EEECCT
T ss_pred HHHHHHHHHHhCCCCEEEEeEEEEEEecCCEEEEEEECCCcEEEeCE-EEEccC
Confidence 456677888884 88886442 555667788889999998888888 666544
No 37
>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}
Probab=66.06 E-value=3.5 Score=34.63 Aligned_cols=37 Identities=22% Similarity=0.313 Sum_probs=27.2
Q ss_pred CCCCCCcEEEcCCCCC-CCCCccch-HHHHHHHHHHHHh
Q psy895 231 PFTLIPHLLLCGSGAH-PGGGVCGA-PGYIAAQMVNRLM 267 (269)
Q Consensus 231 ~~t~i~nLyl~G~~~~-pG~Gv~gv-sg~~~a~~il~~~ 267 (269)
.+|.++|+|.+||.+. |+.....+ .|..+|..|...+
T Consensus 253 ~~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~~~l 291 (297)
T 3fbs_A 253 KQTTARGIFACGDVARPAGSVALAVGDGAMAGAAAHRSI 291 (297)
T ss_dssp CBCSSTTEEECSGGGCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CccCCCCEEEEeecCCchHHHHHHHHhHHHHHHHHHHHH
Confidence 4678999999999997 43222223 7888988887765
No 38
>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*
Probab=65.65 E-value=4.6 Score=34.37 Aligned_cols=39 Identities=23% Similarity=0.142 Sum_probs=28.0
Q ss_pred CCCCCCcEEEcCCCCCCCCCc--cch-HHHHHHHHHHHHhcC
Q psy895 231 PFTLIPHLLLCGSGAHPGGGV--CGA-PGYIAAQMVNRLMRK 269 (269)
Q Consensus 231 ~~t~i~nLyl~G~~~~pG~Gv--~gv-sg~~~a~~il~~~~~ 269 (269)
.+|..+|+|.+||.+...... ..+ .|..+|..|.+.+.+
T Consensus 269 ~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~ 310 (311)
T 2q0l_A 269 MKTNVQGLFAAGDIRIFAPKQVVCAASDGATAALSVISYLEH 310 (311)
T ss_dssp CBCSSTTEEECSTTBTTCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccCCCCeEEcccccCcchHHHHHHHHhHHHHHHHHHHHHhh
Confidence 467899999999998621222 222 789999999887653
No 39
>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*
Probab=65.56 E-value=3.1 Score=35.70 Aligned_cols=38 Identities=18% Similarity=0.274 Sum_probs=28.2
Q ss_pred CCCCCCcEEEcCCCCCCCC-Ccc-ch-HHHHHHHHHHHHhc
Q psy895 231 PFTLIPHLLLCGSGAHPGG-GVC-GA-PGYIAAQMVNRLMR 268 (269)
Q Consensus 231 ~~t~i~nLyl~G~~~~pG~-Gv~-gv-sg~~~a~~il~~~~ 268 (269)
.+|.++|+|.+||.+..+. .+. .+ .|..||..|...+.
T Consensus 295 ~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~ 335 (338)
T 3itj_A 295 SLTSVPGFFAAGDVQDSKYRQAITSAGSGCMAALDAEKYLT 335 (338)
T ss_dssp SBCSSTTEEECGGGGCSSCCCHHHHHHHHHHHHHHHHHHHT
T ss_pred cccCCCCEEEeeccCCCCccceeeehhhhHHHHHHHHHHHh
Confidence 4677999999999996322 222 23 89999999988764
No 40
>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A
Probab=65.52 E-value=12 Score=36.50 Aligned_cols=50 Identities=8% Similarity=-0.031 Sum_probs=35.6
Q ss_pred hhhhhHHHHHH-hcCeeeeee--eeeeeceeeEEEecCCCccCccCCCCCCCCC
Q psy895 4 LSFLKDKEIEK-KGGKRLRKI--TLVIRTRSIYCYECDSWKDRRCLDPFNYSVL 54 (269)
Q Consensus 4 ~~~~~~~~i~~-~gg~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~fi~~~~ 54 (269)
+...|.+.+++ .|.+++... .++.++.++..|.++++..++|+. +|-++=
T Consensus 126 ~~~~L~e~Le~~~GV~I~~~~V~~L~~e~g~V~GV~t~dG~~I~Ad~-VVLATG 178 (651)
T 3ces_A 126 YRQAVRTALENQPNLMIFQQAVEDLIVENDRVVGAVTQMGLKFRAKA-VVLTVG 178 (651)
T ss_dssp HHHHHHHHHHTCTTEEEEECCEEEEEESSSBEEEEEETTSEEEEEEE-EEECCS
T ss_pred HHHHHHHHHHhCCCCEEEEEEEEEEEecCCEEEEEEECCCCEEECCE-EEEcCC
Confidence 45667788888 588886542 555567778889998888888887 665533
No 41
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*
Probab=62.00 E-value=2.3 Score=42.38 Aligned_cols=222 Identities=8% Similarity=-0.034 Sum_probs=100.7
Q ss_pred hhHHHHHHhcCeeeeee---eeeeeceeeEEEecCCCccCccCCCCCCCCCCCCCCCcccccccccccc-cCcccchhhh
Q psy895 7 LKDKEIEKKGGKRLRKI---TLVIRTRSIYCYECDSWKDRRCLDPFNYSVLPIHQPALNPCNGCCVKMV-RNSKTEFESV 82 (269)
Q Consensus 7 ~~~~~i~~~gg~~~~~~---~~~~~~~~i~~~~~~~~~~~~~~~~fi~~~~p~~~~~~~~~~~~~~~Ll-~~~~~~~~~~ 82 (269)
.|++.+.+ |.+|+.+. .|..++..+. +++.+++.++|+. +|.++.+- +.- -.++ -...++....
T Consensus 535 ~l~~aLa~-gl~I~l~t~V~~I~~~~~~v~-V~~~~G~~i~Ad~-VIvA~P~~-----vL~----~~~i~f~P~Lp~~~~ 602 (776)
T 4gut_A 535 VIIEKLAE-GLDIQLKSPVQCIDYSGDEVQ-VTTTDGTGYSAQK-VLVTVPLA-----LLQ----KGAIQFNPPLSEKKM 602 (776)
T ss_dssp HHHHHHHT-TSCEESSCCEEEEECSSSSEE-EEETTCCEEEESE-EEECCCHH-----HHH----TTCSEEESCCCHHHH
T ss_pred HHHHHHHh-CCcEEcCCeeEEEEEcCCEEE-EEECCCcEEEcCE-EEECCCHH-----HHh----hcccccCCCCCHHHH
Confidence 34444443 66776664 5555555554 7888888899999 88886431 110 0011 1123445555
Q ss_pred hhhccCCCCCceEEEEe--eccc-C-CCCCcceEeeeC----CCCeEEEEcCCCCCCCCCCCCe-eEEEEEEecccccCC
Q psy895 83 RRTCTSKLDISLFMVDH--VCMY-E-GSGRGHMCFCES----DRPMIEMVLPSSLDNTLSPPGH-HVCLLFTQFTPYKLA 153 (269)
Q Consensus 83 ~r~~~~~~s~s~f~vyl--~~~~-~-~~~~~~i~~~~~----~~p~~~v~~ps~~Dp~~AP~G~-~~l~i~~~~~p~~~~ 153 (269)
+.++++..+ +...+++ +..| + .......+..++ ..+.+.+.. | .+|+|. ..|..++. -+..
T Consensus 603 ~ai~~l~~g-~~~KV~l~f~~~FW~~~~~g~~~fG~l~~~~~~~~~~~~~~----d--~~p~g~~~vL~~~i~-G~~a-- 672 (776)
T 4gut_A 603 KAINSLGAG-IIEKIALQFPYRFWDSKVQGADFFGHVPPSASKRGLFAVFY----D--MDPQKKHSVLMSVIA-GEAV-- 672 (776)
T ss_dssp HHHHHEEEE-CCEEEEEECSSCTTHHHHTTCSEEEECCSSGGGTTEEEEEE----E--SCTTSCSCEEEEEEC-THHH--
T ss_pred HHHHhCCCe-eEEEEEEecCcccccccCCCCceEEeecCCcCCCceEEEEe----c--CCCCCCceEEEEEec-chhH--
Confidence 667666543 2333444 4332 2 111112211111 122222221 1 124443 23433332 1110
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHHCCCCC-cceEEEEecChhHHHHhhCCCCCccccccccccccccCCCCCCCCCCCCC
Q psy895 154 GDRDWTEEDKANYATNVFSSIEQYCPGFT-QDIVGYEILTPPDLEKEFGLTGGNIFHGALSLNQLLFNRPLPIQGPSSPF 232 (269)
Q Consensus 154 ~g~~w~~~~K~~~a~~il~~le~~~P~i~-~~I~~~~~~TP~t~~~y~~~~~GsiyG~~~~~~q~~~~rp~~~~~~~~~~ 232 (269)
..+...-.+++.+.+++.|.+.++.-. .......+. .|.+-. ...|+. ..... .+....++ ...
T Consensus 673 --~~l~~lsdeel~~~~l~~L~~ifg~~~~~~P~~~~vt---~W~~dp-~s~Gsy-s~~~~-g~~~~~~~-------~L~ 737 (776)
T 4gut_A 673 --ASVRTLDDKQVLQQCMATLRELFKEQEVPDPTKYFVT---RWSTDP-WIQMAY-SFVKT-GGSGEAYD-------IIA 737 (776)
T ss_dssp --HHHHTSCHHHHHHHHHHHHHHHTTTSCCCCCSEEEEC---CGGGCT-TTCCSE-EEEBT-TCCTHHHH-------HHH
T ss_pred --HHHHcCCHHHHHHHHHHHHHHHhCcccccCcceEEEe---cCCCCC-ccCCCC-CccCC-CCchhHHH-------HHh
Confidence 011111135688889999999987521 122222211 222211 112321 11100 00000000 011
Q ss_pred CC-CCcEEEcCCCCCCCC-C-ccch--HHHHHHHHHHH
Q psy895 233 TL-IPHLLLCGSGAHPGG-G-VCGA--PGYIAAQMVNR 265 (269)
Q Consensus 233 t~-i~nLyl~G~~~~pG~-G-v~gv--sg~~~a~~il~ 265 (269)
.| ..+|||+|..+.+.+ | +.|+ ||..+|++|++
T Consensus 738 ~p~~grL~FAGE~Ts~~~~gtveGAi~SG~RaA~~Ila 775 (776)
T 4gut_A 738 EDIQGTVFFAGEATNRHFPQTVTGAYLSGVREASKIAA 775 (776)
T ss_dssp CCBTTTEEECSGGGCSSSCSSHHHHHHHHHHHHHHHHC
T ss_pred CcCCCcEEEEehhhcCCCCcCHHHHHHHHHHHHHHHHh
Confidence 23 378999999998532 3 4564 99999999974
No 42
>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*
Probab=61.77 E-value=8.4 Score=32.65 Aligned_cols=38 Identities=21% Similarity=0.301 Sum_probs=27.1
Q ss_pred CCCCCCCcEEEcCCCCCCCCC-cc-ch-HHHHHHHHHHHHh
Q psy895 230 SPFTLIPHLLLCGSGAHPGGG-VC-GA-PGYIAAQMVNRLM 267 (269)
Q Consensus 230 ~~~t~i~nLyl~G~~~~pG~G-v~-gv-sg~~~a~~il~~~ 267 (269)
..+|.+||+|.+||.+...+- +. .+ .|..||..+.+.+
T Consensus 271 ~~~Ts~pgIyA~GDv~~~~~~~~~~A~~~G~~AA~~~~~yL 311 (314)
T 4a5l_A 271 GPKTSVDGVFACGDVCDRVYRQAIVAAGSGCMAALSCEKWL 311 (314)
T ss_dssp TTBCSSTTEEECSTTTCSSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCccCCCCEEEEEeccCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999999863221 22 22 6888888887655
No 43
>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*
Probab=60.70 E-value=14 Score=32.52 Aligned_cols=42 Identities=12% Similarity=-0.101 Sum_probs=27.2
Q ss_pred hhhhhHHHHHHhcCeeeeee---eeeeeceeeEEEecCCCccCccCC
Q psy895 4 LSFLKDKEIEKKGGKRLRKI---TLVIRTRSIYCYECDSWKDRRCLD 47 (269)
Q Consensus 4 ~~~~~~~~i~~~gg~~~~~~---~~~~~~~~i~~~~~~~~~~~~~~~ 47 (269)
+...|.+.+++.|++++.+. .++.++..+. ++++++ ..+|+.
T Consensus 155 ~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~v~-v~t~~g-~i~a~~ 199 (397)
T 2oln_A 155 TLAALFTLAQAAGATLRAGETVTELVPDADGVS-VTTDRG-TYRAGK 199 (397)
T ss_dssp HHHHHHHHHHHTTCEEEESCCEEEEEEETTEEE-EEESSC-EEEEEE
T ss_pred HHHHHHHHHHHcCCEEECCCEEEEEEEcCCeEE-EEECCC-EEEcCE
Confidence 34567788889999998774 5555555554 556554 466666
No 44
>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}
Probab=58.46 E-value=17 Score=35.47 Aligned_cols=49 Identities=8% Similarity=0.005 Sum_probs=35.0
Q ss_pred hhhhhhHHHHHHh-cCeeeeee--eeeeeceeeEEEecCCCccCccCCCCCCC
Q psy895 3 LLSFLKDKEIEKK-GGKRLRKI--TLVIRTRSIYCYECDSWKDRRCLDPFNYS 52 (269)
Q Consensus 3 ~~~~~~~~~i~~~-gg~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~fi~~ 52 (269)
.+...|.+.++++ |.+++... .++.++.++..|.+.++..++|+. +|-+
T Consensus 118 ~l~~~L~~~l~~~~GV~I~~~~V~~L~~d~g~V~GV~t~~G~~i~Ad~-VVLA 169 (641)
T 3cp8_A 118 QYSLYMRRIVEHEPNIDLLQDTVIGVSANSGKFSSVTVRSGRAIQAKA-AILA 169 (641)
T ss_dssp HHHHHHHHHHHTCTTEEEEECCEEEEEEETTEEEEEEETTSCEEEEEE-EEEC
T ss_pred HHHHHHHHHHHhCCCCEEEeeEEEEEEecCCEEEEEEECCCcEEEeCE-EEEC
Confidence 3456677888885 88886552 555667778888888888888887 5554
No 45
>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}
Probab=58.05 E-value=10 Score=32.23 Aligned_cols=38 Identities=24% Similarity=0.308 Sum_probs=26.5
Q ss_pred CCCCCCCcEEEcCCCCCCCCC-cc-ch-HHHHHHHHHHHHh
Q psy895 230 SPFTLIPHLLLCGSGAHPGGG-VC-GA-PGYIAAQMVNRLM 267 (269)
Q Consensus 230 ~~~t~i~nLyl~G~~~~pG~G-v~-gv-sg~~~a~~il~~~ 267 (269)
..+|.+||+|.+||.+..+.- +. .+ .|+.||..|.+.+
T Consensus 265 ~~~Ts~pgIyA~GDv~~~~~~~~~~A~~~G~~AA~~i~~~L 305 (312)
T 4gcm_A 265 DMTTSVPGIFAAGDVRDKGLRQIVTATGDGSIAAQSAAEYI 305 (312)
T ss_dssp TSBCSSTTEEECSTTBSCSCCSHHHHHHHHHHHHHHHHHHH
T ss_pred CCccCCCCEEEEeecCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999854322 22 12 6888888885543
No 46
>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}
Probab=57.44 E-value=11 Score=32.02 Aligned_cols=38 Identities=16% Similarity=0.027 Sum_probs=27.9
Q ss_pred CCCCCCcEEEcCCCCCCCCCc-c-ch-HHHHHHHHHHHHhc
Q psy895 231 PFTLIPHLLLCGSGAHPGGGV-C-GA-PGYIAAQMVNRLMR 268 (269)
Q Consensus 231 ~~t~i~nLyl~G~~~~pG~Gv-~-gv-sg~~~a~~il~~~~ 268 (269)
.+|..+|+|.+||.+.+.... . .+ .|..+|..|.+.+.
T Consensus 276 ~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~ 316 (319)
T 3cty_A 276 QRTSVPGVYAAGDVTSGNFAQIASAVGDGCKAALSLYSDSI 316 (319)
T ss_dssp CBCSSTTEEECSTTBTTCCCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CccCCCCEEEeecccCcchhhHHHHHHHHHHHHHHHHHHhh
Confidence 467899999999999642222 2 22 89999999988764
No 47
>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}
Probab=56.00 E-value=5.1 Score=33.90 Aligned_cols=37 Identities=22% Similarity=0.147 Sum_probs=27.1
Q ss_pred CCCCCCcEEEcCCCCCCCCC-cc-ch-HHHHHHHHHHHHh
Q psy895 231 PFTLIPHLLLCGSGAHPGGG-VC-GA-PGYIAAQMVNRLM 267 (269)
Q Consensus 231 ~~t~i~nLyl~G~~~~pG~G-v~-gv-sg~~~a~~il~~~ 267 (269)
.+|.++|+|.+||.+..+.. +. .+ .|..+|..|...+
T Consensus 272 ~~t~~~~v~a~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l 311 (315)
T 3r9u_A 272 MQTSVAGLFAAGDLRKDAPKQVICAAGDGAVAALSAMAYI 311 (315)
T ss_dssp CBCSSTTEEECGGGBTTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCEEEeecccCCchhhhhhHHhhHHHHHHHHHHHH
Confidence 56789999999999853222 22 23 8999999998765
No 48
>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*
Probab=55.77 E-value=7.7 Score=34.94 Aligned_cols=48 Identities=15% Similarity=0.032 Sum_probs=37.9
Q ss_pred hhhhhHHHHHHhcCeeeeee------eeeeeceeeEEEecCCCccCccCCCCCCC
Q psy895 4 LSFLKDKEIEKKGGKRLRKI------TLVIRTRSIYCYECDSWKDRRCLDPFNYS 52 (269)
Q Consensus 4 ~~~~~~~~i~~~gg~~~~~~------~~~~~~~~i~~~~~~~~~~~~~~~~fi~~ 52 (269)
+...|.+.++++|++++.+. .++.++.++..+++++++.++|+. +|.+
T Consensus 163 ~~~~L~~~a~~~Gv~i~~~t~~~~V~~i~~~~~~v~gV~t~~G~~i~Ad~-VV~A 216 (438)
T 3dje_A 163 ALVAAAREAQRMGVKFVTGTPQGRVVTLIFENNDVKGAVTADGKIWRAER-TFLC 216 (438)
T ss_dssp HHHHHHHHHHHTTCEEEESTTTTCEEEEEEETTEEEEEEETTTEEEECSE-EEEC
T ss_pred HHHHHHHHHHhcCCEEEeCCcCceEEEEEecCCeEEEEEECCCCEEECCE-EEEC
Confidence 45678889999999998753 666677788889999998888888 5544
No 49
>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}
Probab=55.39 E-value=7 Score=33.52 Aligned_cols=37 Identities=27% Similarity=0.239 Sum_probs=26.4
Q ss_pred CCCCCCcEEEcCCCCCCCCCc--cch-HHHHHHHHHHHHh
Q psy895 231 PFTLIPHLLLCGSGAHPGGGV--CGA-PGYIAAQMVNRLM 267 (269)
Q Consensus 231 ~~t~i~nLyl~G~~~~pG~Gv--~gv-sg~~~a~~il~~~ 267 (269)
.+|..+|+|.+||.+...... ..+ .|..+|..|++.+
T Consensus 272 ~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l 311 (325)
T 2q7v_A 272 IYTNIPMLFAAGDVSDYIYRQLATSVGAGTRAAMMTERQL 311 (325)
T ss_dssp TBCSSTTEEECSTTTCSSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CccCCCCEEEeecccCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999998631122 222 7888898888765
No 50
>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}
Probab=53.32 E-value=11 Score=32.26 Aligned_cols=38 Identities=16% Similarity=0.124 Sum_probs=27.1
Q ss_pred CCCCCCcEEEcC--CCCCCCCC-ccch--HHHHHHHHHHHHhc
Q psy895 231 PFTLIPHLLLCG--SGAHPGGG-VCGA--PGYIAAQMVNRLMR 268 (269)
Q Consensus 231 ~~t~i~nLyl~G--~~~~pG~G-v~gv--sg~~~a~~il~~~~ 268 (269)
.+|..+|+|.+| +.+.++.+ +.++ .|..+|..|...+.
T Consensus 310 ~~t~~~~vya~Gd~d~~~~~~~~~~~A~~~g~~~a~~i~~~l~ 352 (357)
T 4a9w_A 310 RALAVPSVWLLGYGDWNGMASATLIGVTRYAREAVRQVTAYCA 352 (357)
T ss_dssp BBSSCTTEEECSSCGGGSTTCSSTTTHHHHHHHHHHHHHHHTC
T ss_pred cCCCCCCeEEeccccccccchhhhhhhHHHHHHHHHHHHHHHH
Confidence 367799999999 55554333 3332 89999999988763
No 51
>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*
Probab=52.99 E-value=4.8 Score=34.42 Aligned_cols=38 Identities=24% Similarity=0.204 Sum_probs=27.6
Q ss_pred CCCCCCCcEEEcCCCCCCCCC-cc-ch-HHHHHHHHHHHHh
Q psy895 230 SPFTLIPHLLLCGSGAHPGGG-VC-GA-PGYIAAQMVNRLM 267 (269)
Q Consensus 230 ~~~t~i~nLyl~G~~~~pG~G-v~-gv-sg~~~a~~il~~~ 267 (269)
..+|.+||+|.+||.+.++.. +. .+ .|..||..|..+|
T Consensus 259 ~~~Ts~p~IyA~GDv~~~~~~~~~~A~~~G~~AA~~i~~~L 299 (304)
T 4fk1_A 259 FGRTSEKNIYLAGETTTQGPSSLIIAASQGNKAAIAINSDI 299 (304)
T ss_dssp TCBCSSTTEEECSHHHHTSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCccCCCCEEEEeccCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999998854332 22 23 7889998887665
No 52
>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5
Probab=52.89 E-value=11 Score=31.90 Aligned_cols=37 Identities=11% Similarity=-0.011 Sum_probs=27.3
Q ss_pred CCCCCCcEEEcCCCCCCCCC-cc-ch-HHHHHHHHHHHHh
Q psy895 231 PFTLIPHLLLCGSGAHPGGG-VC-GA-PGYIAAQMVNRLM 267 (269)
Q Consensus 231 ~~t~i~nLyl~G~~~~pG~G-v~-gv-sg~~~a~~il~~~ 267 (269)
.+|.++|+|.+||.+..... +. .+ .|..+|..|...+
T Consensus 265 ~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l 304 (310)
T 1fl2_A 265 CETNVKGVFAAGDCTTVPYKQIIIATGEGAKASLSAFDYL 304 (310)
T ss_dssp CBCSSTTEEECSTTBSCSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred CccCCCCEEEeecccCCcchhhhhhHhhHHHHHHHHHHHH
Confidence 46789999999999974222 22 22 8899999998775
No 53
>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}
Probab=52.73 E-value=9.6 Score=34.25 Aligned_cols=49 Identities=8% Similarity=-0.149 Sum_probs=38.8
Q ss_pred hhhhhHHHHHHhcCeeeeee---eeeeeceeeEEEecCCCccCccCCCCCCCC
Q psy895 4 LSFLKDKEIEKKGGKRLRKI---TLVIRTRSIYCYECDSWKDRRCLDPFNYSV 53 (269)
Q Consensus 4 ~~~~~~~~i~~~gg~~~~~~---~~~~~~~~i~~~~~~~~~~~~~~~~fi~~~ 53 (269)
++..+.+.++++|.+++.+. +++.++.++..+++++++...|+. +|..+
T Consensus 196 ~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~~v~l~dG~~i~aD~-Vv~a~ 247 (415)
T 3lxd_A 196 LSEFYQAEHRAHGVDLRTGAAMDCIEGDGTKVTGVRMQDGSVIPADI-VIVGI 247 (415)
T ss_dssp HHHHHHHHHHHTTCEEEETCCEEEEEESSSBEEEEEESSSCEEECSE-EEECS
T ss_pred HHHHHHHHHHhCCCEEEECCEEEEEEecCCcEEEEEeCCCCEEEcCE-EEECC
Confidence 45678889999999999774 555556678899999999888988 66663
No 54
>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}
Probab=51.17 E-value=11 Score=33.71 Aligned_cols=49 Identities=8% Similarity=-0.049 Sum_probs=39.0
Q ss_pred hhhhhHHHHHHhcCeeeeee---eeeeeceeeEEEecCCCccCccCCCCCCCC
Q psy895 4 LSFLKDKEIEKKGGKRLRKI---TLVIRTRSIYCYECDSWKDRRCLDPFNYSV 53 (269)
Q Consensus 4 ~~~~~~~~i~~~gg~~~~~~---~~~~~~~~i~~~~~~~~~~~~~~~~fi~~~ 53 (269)
++..+.+.+++.|.+++.+. +++.++.++..+++++++...|+. +|..+
T Consensus 186 ~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~~V~~~dG~~i~aD~-Vv~a~ 237 (404)
T 3fg2_P 186 ISSYFHDRHSGAGIRMHYGVRATEIAAEGDRVTGVVLSDGNTLPCDL-VVVGV 237 (404)
T ss_dssp HHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTSCEEECSE-EEECC
T ss_pred HHHHHHHHHHhCCcEEEECCEEEEEEecCCcEEEEEeCCCCEEEcCE-EEECc
Confidence 46678889999999998874 555566678899999999888988 66653
No 55
>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*
Probab=51.17 E-value=5.8 Score=34.09 Aligned_cols=36 Identities=19% Similarity=0.245 Sum_probs=26.2
Q ss_pred CCCCCcEEEcCCCCCCCCC--ccch-HHHHHHHHHHHHh
Q psy895 232 FTLIPHLLLCGSGAHPGGG--VCGA-PGYIAAQMVNRLM 267 (269)
Q Consensus 232 ~t~i~nLyl~G~~~~pG~G--v~gv-sg~~~a~~il~~~ 267 (269)
+|..+|+|.+||.+.+... ...+ .|..+|..|...+
T Consensus 284 ~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l 322 (333)
T 1vdc_A 284 QTSVPGVFAAGDVQDKKYRQAITAAGTGCMAALDAEHYL 322 (333)
T ss_dssp BCSSTTEEECGGGGCSSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCEEEeeeccCCCchhHHHHHHhHHHHHHHHHHHH
Confidence 6789999999999864222 1222 7888898888765
No 56
>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*
Probab=50.99 E-value=11 Score=32.04 Aligned_cols=37 Identities=24% Similarity=0.214 Sum_probs=27.5
Q ss_pred CCCCCcEEEcCCCCCCCC-Cc-cch-HHHHHHHHHHHHhc
Q psy895 232 FTLIPHLLLCGSGAHPGG-GV-CGA-PGYIAAQMVNRLMR 268 (269)
Q Consensus 232 ~t~i~nLyl~G~~~~pG~-Gv-~gv-sg~~~a~~il~~~~ 268 (269)
+|..+|+|.+||.+.+.. .+ ..+ .|..+|..|...+.
T Consensus 275 ~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~ 314 (320)
T 1trb_A 275 QTSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAERYLD 314 (320)
T ss_dssp BCSSTTEEECGGGGCSSSCCHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCCCCEEEcccccCCcchhhhhhhccHHHHHHHHHHHHH
Confidence 678999999999986422 22 222 89999999988764
No 57
>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*
Probab=50.78 E-value=11 Score=32.07 Aligned_cols=38 Identities=21% Similarity=0.094 Sum_probs=26.8
Q ss_pred CCCCCCcEEEcCCCCCCCCCcc----ch-HHHHHHHHHHHHhc
Q psy895 231 PFTLIPHLLLCGSGAHPGGGVC----GA-PGYIAAQMVNRLMR 268 (269)
Q Consensus 231 ~~t~i~nLyl~G~~~~pG~Gv~----gv-sg~~~a~~il~~~~ 268 (269)
.+|.++|+|.+||.+...++.. .+ .|..+|..|+..+.
T Consensus 273 ~~t~~~~vya~GD~~~~~~~~~~~~~A~~~g~~aa~~i~~~l~ 315 (332)
T 3lzw_A 273 METNIEGFFAAGDICTYEGKVNLIASGFGEAPTAVNNAKAYMD 315 (332)
T ss_dssp SBCSSTTEEECGGGEECTTCCCCHHHHHHHHHHHHHHHHHHHC
T ss_pred CceecCCEEEccceecCCCCcceEeeehhhHHHHHHHHHHhhC
Confidence 4678999999999985211221 12 78899999887753
No 58
>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}
Probab=50.67 E-value=12 Score=35.60 Aligned_cols=38 Identities=24% Similarity=0.288 Sum_probs=30.5
Q ss_pred CCCC-CCCcEEEcCCCCCCCCCccc--hHHHHHHHHHHHHh
Q psy895 230 SPFT-LIPHLLLCGSGAHPGGGVCG--APGYIAAQMVNRLM 267 (269)
Q Consensus 230 ~~~t-~i~nLyl~G~~~~pG~Gv~g--vsg~~~a~~il~~~ 267 (269)
...| .|+|||.||+++--.+|+.. +.|+.+|+.|++.+
T Consensus 502 ~~~~~~~~gly~~GegaG~a~gi~~Aa~~G~~~a~~i~~~~ 542 (549)
T 3nlc_A 502 DFQSVNLKGFYPAGEGAGYAGGILSAGIDGIKVAEAVARDI 542 (549)
T ss_dssp TTSCTTCBTEEECHHHHTSCCSHHHHHHHHHHHHHHHHHHH
T ss_pred CceECCcCCEEEccccCChhhHHHHHHHHHHHHHHHHHHHh
Confidence 3456 59999999999965568764 49999999998875
No 59
>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*
Probab=50.49 E-value=25 Score=31.49 Aligned_cols=30 Identities=17% Similarity=0.188 Sum_probs=23.1
Q ss_pred CCcEEEcCCCCCCCCCccc--hHHHHHHHHHHHH
Q psy895 235 IPHLLLCGSGAHPGGGVCG--APGYIAAQMVNRL 266 (269)
Q Consensus 235 i~nLyl~G~~~~pG~Gv~g--vsg~~~a~~il~~ 266 (269)
.+|||++.... |+|+.. +.|...|+.|++.
T Consensus 353 ~~~l~~a~G~~--g~G~~~ap~~g~~la~~i~g~ 384 (438)
T 3dje_A 353 YHSLVLGCGAS--GRGFKYLPSIGNLIVDAMEGK 384 (438)
T ss_dssp CTTEEEEECCT--TCCGGGTTTHHHHHHHHHHTC
T ss_pred CCCEEEEECCC--CcchhhhHHHHHHHHHHHhCC
Confidence 68999986644 678764 4899999998764
No 60
>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}
Probab=48.08 E-value=17 Score=31.09 Aligned_cols=37 Identities=27% Similarity=0.278 Sum_probs=26.1
Q ss_pred CCCCCCcEEEcCCCCCC-CC-Ccc--ch-HHHHHHHHHHHHh
Q psy895 231 PFTLIPHLLLCGSGAHP-GG-GVC--GA-PGYIAAQMVNRLM 267 (269)
Q Consensus 231 ~~t~i~nLyl~G~~~~p-G~-Gv~--gv-sg~~~a~~il~~~ 267 (269)
.+|.++|+|.+||.+.. +. ... ++ .|..+|..|.+++
T Consensus 275 ~~t~~~~vya~GD~~~~~~~~~~~~~A~~~g~~aa~~i~~~l 316 (335)
T 2zbw_A 275 MATSIPGVYACGDIVTYPGKLPLIVLGFGEAAIAANHAAAYA 316 (335)
T ss_dssp CBCSSTTEEECSTTEECTTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCEEEeccccccCcchhhhhhhHHHHHHHHHHHHHHh
Confidence 46789999999999852 21 111 12 6888898888775
No 61
>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}
Probab=46.35 E-value=13 Score=32.38 Aligned_cols=37 Identities=19% Similarity=0.080 Sum_probs=25.9
Q ss_pred CCCCCCcEEEcCCCCCCCCCcc----ch-HHHHHHHHHHHHh
Q psy895 231 PFTLIPHLLLCGSGAHPGGGVC----GA-PGYIAAQMVNRLM 267 (269)
Q Consensus 231 ~~t~i~nLyl~G~~~~pG~Gv~----gv-sg~~~a~~il~~~ 267 (269)
.+|.++|+|.+||.+...++.. .+ .|..+|..|++.+
T Consensus 286 ~~t~~~~vya~GD~~~~~~~~~~~~~A~~~g~~aa~~i~~~l 327 (360)
T 3ab1_A 286 MKTSVDGLYAAGDIAYYPGKLKIIQTGLSEATMAVRHSLSYI 327 (360)
T ss_dssp SBCSSTTEEECSTTEECTTCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred CcCCCCCEEEecCccCCCCccceeehhHHHHHHHHHHHHhhc
Confidence 4678999999999985211111 12 6888888888765
No 62
>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*
Probab=46.25 E-value=27 Score=30.38 Aligned_cols=42 Identities=17% Similarity=0.049 Sum_probs=27.7
Q ss_pred hhhhhHHHHHHhcCeeeeee---eeeeeceeeEEEecCCCccCccCC
Q psy895 4 LSFLKDKEIEKKGGKRLRKI---TLVIRTRSIYCYECDSWKDRRCLD 47 (269)
Q Consensus 4 ~~~~~~~~i~~~gg~~~~~~---~~~~~~~~i~~~~~~~~~~~~~~~ 47 (269)
+...|.+.++++|++++.+. .++.++..+. ++++++ ..+|+.
T Consensus 152 ~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~~~-v~~~~g-~~~a~~ 196 (389)
T 2gf3_A 152 CIRAYRELAEARGAKVLTHTRVEDFDISPDSVK-IETANG-SYTADK 196 (389)
T ss_dssp HHHHHHHHHHHTTCEEECSCCEEEEEECSSCEE-EEETTE-EEEEEE
T ss_pred HHHHHHHHHHHCCCEEEcCcEEEEEEecCCeEE-EEeCCC-EEEeCE
Confidence 44678888999999998774 4544444433 556555 466776
No 63
>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*
Probab=45.69 E-value=9.3 Score=36.09 Aligned_cols=37 Identities=22% Similarity=0.152 Sum_probs=23.4
Q ss_pred CCCCCCCcEEEcCCCCC---CCC----Ccc---c-hHHHHHHHHHHHH
Q psy895 230 SPFTLIPHLLLCGSGAH---PGG----GVC---G-APGYIAAQMVNRL 266 (269)
Q Consensus 230 ~~~t~i~nLyl~G~~~~---pG~----Gv~---g-vsg~~~a~~il~~ 266 (269)
..+|+|||||.+|..+. .|. |-. + +.|+.|++.+.+.
T Consensus 362 ~~~t~I~GLyAaGE~a~~g~hGanrl~gnsl~~~~vfG~~Ag~~aa~~ 409 (540)
T 1chu_A 362 HGRTDVEGLYAIGEVSYTGLHGANRMASNSLLECLVYGWSAAEDITRR 409 (540)
T ss_dssp TCBCSSBTEEECGGGEECSSSTTSCCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccCCEEeccccccccccCCCcCcchhHHHHHHHHHHHHHHHHHh
Confidence 34688999999998652 111 111 1 3688888777654
No 64
>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*
Probab=44.69 E-value=18 Score=32.01 Aligned_cols=34 Identities=18% Similarity=0.275 Sum_probs=24.5
Q ss_pred CCCcEEEcCCCC-------CCCCCccc---hHHHHHHHHHHHHhc
Q psy895 234 LIPHLLLCGSGA-------HPGGGVCG---APGYIAAQMVNRLMR 268 (269)
Q Consensus 234 ~i~nLyl~G~~~-------~pG~Gv~g---vsg~~~a~~il~~~~ 268 (269)
-+||||++|-.+ .+|. +-| +||..+|+.|++++.
T Consensus 282 ~~~~~~~~g~~~~~~~~~~r~g~-~fg~m~~sg~~~a~~~~~~~~ 325 (326)
T 2gjc_A 282 GVDNMYFAGMEVAELDGLNRMGP-TFGAMALSGVHAAEQILKHFA 325 (326)
T ss_dssp TSTTEEECTHHHHHHHTCCBCCS-CCHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCEEECChHHHHhcCCCCCCh-hhhhhhhhhHHHHHHHHHHhh
Confidence 489999999543 3322 223 399999999998863
No 65
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1
Probab=42.83 E-value=13 Score=35.13 Aligned_cols=34 Identities=29% Similarity=0.353 Sum_probs=0.0
Q ss_pred CCCCcEEEcCCCCCCCCCccc-------------hHHHHHHHHHHHHhcC
Q psy895 233 TLIPHLLLCGSGAHPGGGVCG-------------APGYIAAQMVNRLMRK 269 (269)
Q Consensus 233 t~i~nLyl~G~~~~pG~Gv~g-------------vsg~~~a~~il~~~~~ 269 (269)
++|||||-+|..+ +|+.| +.|++|++.+.+...|
T Consensus 519 ~~I~GLyAaGe~~---~g~~g~~~~~g~sl~~~~v~Gr~Ag~~aa~~~~~ 565 (566)
T 1qo8_A 519 KPIDGLFAAGEVT---GGVHGYNRLGGNAIADTVVFGRIAGDNAAKHALD 565 (566)
T ss_dssp CEEEEEEECSTTB---CSSSTTCCCTTHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CEeCCEEeccccc---CCCCCCCCCchhhHHHHHHHHHHHHHHHHHHhhh
No 66
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1
Probab=42.14 E-value=15 Score=33.43 Aligned_cols=49 Identities=8% Similarity=-0.115 Sum_probs=37.0
Q ss_pred hhhhhHHHHHHhcCeeeeee---eeeeeceeeEEEecCCCccCccCCCCCCCC
Q psy895 4 LSFLKDKEIEKKGGKRLRKI---TLVIRTRSIYCYECDSWKDRRCLDPFNYSV 53 (269)
Q Consensus 4 ~~~~~~~~i~~~gg~~~~~~---~~~~~~~~i~~~~~~~~~~~~~~~~fi~~~ 53 (269)
+...|.+.+++.|.+++.+. .++.++.++..+++++++.++|+. +|-+.
T Consensus 136 l~~~L~~~~~~~GV~i~~~~~V~~i~~~~~~v~~V~~~~G~~i~Ad~-VVlAt 187 (447)
T 2i0z_A 136 VVDALLTRLKDLGVKIRTNTPVETIEYENGQTKAVILQTGEVLETNH-VVIAV 187 (447)
T ss_dssp HHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTCCEEECSC-EEECC
T ss_pred HHHHHHHHHHHCCCEEEeCcEEEEEEecCCcEEEEEECCCCEEECCE-EEECC
Confidence 34678888899999998774 555566777888888887688887 66553
No 67
>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*
Probab=42.01 E-value=17 Score=28.04 Aligned_cols=38 Identities=18% Similarity=0.093 Sum_probs=27.0
Q ss_pred CCCCCCCcEEEcCCCCCCCCCc-c-ch-HHHHHHHHHHHHh
Q psy895 230 SPFTLIPHLLLCGSGAHPGGGV-C-GA-PGYIAAQMVNRLM 267 (269)
Q Consensus 230 ~~~t~i~nLyl~G~~~~pG~Gv-~-gv-sg~~~a~~il~~~ 267 (269)
..+|.++|+|.+||.+...... . .+ .|..+|..|.+.+
T Consensus 130 ~~~t~~~~i~a~GD~~~~~~~~~~~A~~~g~~aa~~i~~~~ 170 (180)
T 2ywl_A 130 GGRTSYPRVYAAGVARGKVPGHAIISAGDGAYVAVHLVSDL 170 (180)
T ss_dssp TCBCSSTTEEECGGGGTCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcCCCCEEEeecccCcchhhHHHHHHhHHHHHHHHHHHh
Confidence 3467789999999998643212 2 12 7888898888764
No 68
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*
Probab=41.83 E-value=9.5 Score=36.24 Aligned_cols=35 Identities=29% Similarity=0.402 Sum_probs=0.0
Q ss_pred CCCCCcEEEcCCCCCCCCCccc-------------hHHHHHHHHHHHHhcC
Q psy895 232 FTLIPHLLLCGSGAHPGGGVCG-------------APGYIAAQMVNRLMRK 269 (269)
Q Consensus 232 ~t~i~nLyl~G~~~~pG~Gv~g-------------vsg~~~a~~il~~~~~ 269 (269)
+++|||||-+|-.+ +|+.| +.|+.|++.+.+...|
T Consensus 524 ~~~I~GLyAaGe~~---~g~~g~~~l~g~sl~~~~vfGr~Ag~~aa~~~~~ 571 (572)
T 1d4d_A 524 AKPITGLYAAGEVT---GGVHGANRLGGNAISDIVTYGRIAGASAAKFAKD 571 (572)
T ss_dssp SSEEEEEEECSTTE---ESTTTTSCCTTHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred CcccCCeeECeecc---cCCCCCCCCchHhHHHHHHHHHHHHHHHHHHhhh
No 69
>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1
Probab=41.31 E-value=63 Score=30.64 Aligned_cols=34 Identities=9% Similarity=-0.047 Sum_probs=24.2
Q ss_pred CCcEEEcCCCCCCCC-Cc-cc----hHHHHHHHHHHHHhc
Q psy895 235 IPHLLLCGSGAHPGG-GV-CG----APGYIAAQMVNRLMR 268 (269)
Q Consensus 235 i~nLyl~G~~~~pG~-Gv-~g----vsg~~~a~~il~~~~ 268 (269)
++|||.+++|++|-. +. +. +=|..+|+.|+++++
T Consensus 545 v~nLrVvDaSv~P~~~~~Np~~ti~aiAeraAd~I~~~~~ 584 (587)
T 1gpe_A 545 TQGLRVIDGSIPPTQVSSHVMTIFYGMALKVADAILDDYA 584 (587)
T ss_dssp CBSEEECSTTCCSSCCSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEeeeccCCCCCCcchHHHHHHHHHHHHHHHHhhhh
Confidence 899999999999843 22 21 256777788877653
No 70
>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}
Probab=40.32 E-value=17 Score=31.67 Aligned_cols=43 Identities=12% Similarity=-0.030 Sum_probs=32.2
Q ss_pred hhhhhHHHHHHhcCeeeeee---eeeeeceeeEEEecCCCccCccCC
Q psy895 4 LSFLKDKEIEKKGGKRLRKI---TLVIRTRSIYCYECDSWKDRRCLD 47 (269)
Q Consensus 4 ~~~~~~~~i~~~gg~~~~~~---~~~~~~~~i~~~~~~~~~~~~~~~ 47 (269)
+...|.+.++++|++++.+. .++.++.++..++++++ ..+|+.
T Consensus 151 l~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~v~gv~~~~g-~i~a~~ 196 (382)
T 1y56_B 151 ATTAFAVKAKEYGAKLLEYTEVKGFLIENNEIKGVKTNKG-IIKTGI 196 (382)
T ss_dssp HHHHHHHHHHHTTCEEECSCCEEEEEESSSBEEEEEETTE-EEECSE
T ss_pred HHHHHHHHHHHCCCEEECCceEEEEEEECCEEEEEEECCc-EEECCE
Confidence 44568888999999998874 55566667777888776 567777
No 71
>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}
Probab=37.44 E-value=14 Score=31.79 Aligned_cols=48 Identities=10% Similarity=0.092 Sum_probs=33.0
Q ss_pred hhhhhHHHHHHhcCeeeeee---eeeeeceeeEEEecCCC--ccCccCCCCCCC
Q psy895 4 LSFLKDKEIEKKGGKRLRKI---TLVIRTRSIYCYECDSW--KDRRCLDPFNYS 52 (269)
Q Consensus 4 ~~~~~~~~i~~~gg~~~~~~---~~~~~~~~i~~~~~~~~--~~~~~~~~fi~~ 52 (269)
+...|.+.++++|++++.+. .++.++.....+.++++ ...+|+. +|.+
T Consensus 152 ~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~a~~-VV~A 204 (369)
T 3dme_A 152 LMLAYQGDAESDGAQLVFHTPLIAGRVRPEGGFELDFGGAEPMTLSCRV-LINA 204 (369)
T ss_dssp HHHHHHHHHHHTTCEEECSCCEEEEEECTTSSEEEEECTTSCEEEEEEE-EEEC
T ss_pred HHHHHHHHHHHCCCEEECCCEEEEEEEcCCceEEEEECCCceeEEEeCE-EEEC
Confidence 55678899999999999764 55555444344777777 3677777 4444
No 72
>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}
Probab=37.32 E-value=24 Score=30.31 Aligned_cols=36 Identities=22% Similarity=0.189 Sum_probs=25.7
Q ss_pred CCCCCcEEEcCCCCCCCCCc--cch-HHHHHHHHHHHHh
Q psy895 232 FTLIPHLLLCGSGAHPGGGV--CGA-PGYIAAQMVNRLM 267 (269)
Q Consensus 232 ~t~i~nLyl~G~~~~pG~Gv--~gv-sg~~~a~~il~~~ 267 (269)
+|..+|+|.+||.+.+.... ..+ .|..+|..|...+
T Consensus 277 ~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aA~~i~~~l 315 (335)
T 2a87_A 277 STSLPGVFAAGDLVDRTYRQAVTAAGSGCAAAIDAERWL 315 (335)
T ss_dssp BCSSTTEEECGGGTCCSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCEEEeeecCCccHHHHHHHHHhHHHHHHHHHHHh
Confidence 67799999999999643221 112 7888888887654
No 73
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1
Probab=35.75 E-value=31 Score=31.26 Aligned_cols=33 Identities=24% Similarity=0.340 Sum_probs=22.9
Q ss_pred CCCcEEEcCCCCCCCCCccc--------hHHHHHHHHHHHHh
Q psy895 234 LIPHLLLCGSGAHPGGGVCG--------APGYIAAQMVNRLM 267 (269)
Q Consensus 234 ~i~nLyl~G~~~~pG~Gv~g--------vsg~~~a~~il~~~ 267 (269)
+|||||++|--+- -+|..| ++|+.|++.+.+..
T Consensus 403 ~i~GLy~aGEv~~-v~g~~GG~~l~~a~~~G~~Ag~~aa~~~ 443 (447)
T 2i0z_A 403 FTNGLYFCGEVLD-IHGYTGGYNITSALVTGRIAGTTAGENA 443 (447)
T ss_dssp SSBTEEECGGGBS-CBCCTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEEeecc-CccCCCcHHHHHHHHHHHHHHHHHHHhh
Confidence 5999999996554 234332 38999988886543
No 74
>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1
Probab=35.71 E-value=16 Score=32.97 Aligned_cols=46 Identities=15% Similarity=0.158 Sum_probs=30.5
Q ss_pred hhhhHHHHHHhcCeeeeee---eeeee----ceeeEEEecCCCccCccCCCCCCCC
Q psy895 5 SFLKDKEIEKKGGKRLRKI---TLVIR----TRSIYCYECDSWKDRRCLDPFNYSV 53 (269)
Q Consensus 5 ~~~~~~~i~~~gg~~~~~~---~~~~~----~~~i~~~~~~~~~~~~~~~~fi~~~ 53 (269)
...|.+.+++.|.+++.+. .++.+ +..+ .++++++ .++|+. +|-++
T Consensus 112 ~~~L~~~~~~~Gv~i~~~~~v~~i~~~~~g~~~~~-~v~~~~g-~i~ad~-VVlAt 164 (401)
T 2gqf_A 112 VEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRF-VLQVNST-QWQCKN-LIVAT 164 (401)
T ss_dssp HHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCE-EEEETTE-EEEESE-EEECC
T ss_pred HHHHHHHHHHCCCEEEeCCEEEEEEcccCcCCCeE-EEEECCC-EEECCE-EEECC
Confidence 3567888899999998875 34434 3333 4666666 578888 66553
No 75
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*
Probab=35.52 E-value=14 Score=34.98 Aligned_cols=34 Identities=32% Similarity=0.512 Sum_probs=0.0
Q ss_pred CCCCcEEEcCCCCCCCCCccc-------------hHHHHHHHHHHHHhcC
Q psy895 233 TLIPHLLLCGSGAHPGGGVCG-------------APGYIAAQMVNRLMRK 269 (269)
Q Consensus 233 t~i~nLyl~G~~~~pG~Gv~g-------------vsg~~~a~~il~~~~~ 269 (269)
++|||||-+|-.+ +|+.| +.|++|++.+.+...|
T Consensus 524 ~~I~GLyAaGe~~---~g~~g~~~l~g~sl~~~~~fGr~Ag~~aa~~~~~ 570 (571)
T 1y0p_A 524 QVIPGLYGAGEVT---GGVHGANRLGGNAISDIITFGRLAGEEAAKYSKK 570 (571)
T ss_dssp CEEEEEEECSTTE---ESSSTTSCCTTHHHHHHHHHHHHHHHHHHHHC--
T ss_pred CCcCCcEeceEcC---CCCcCCCCCchHhHHHHHHHHHHHHHHHHHHhhh
No 76
>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7
Probab=34.74 E-value=27 Score=28.55 Aligned_cols=48 Identities=6% Similarity=-0.103 Sum_probs=34.7
Q ss_pred hhhhhHHHHHHh-cCeeeeee--eeeeeceeeEEEecCCCccCccCCCCCCC
Q psy895 4 LSFLKDKEIEKK-GGKRLRKI--TLVIRTRSIYCYECDSWKDRRCLDPFNYS 52 (269)
Q Consensus 4 ~~~~~~~~i~~~-gg~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~fi~~ 52 (269)
+...|.+.++++ |-+++... .++.++.++..+.+++++.++|+. +|.+
T Consensus 70 ~~~~l~~~~~~~~gv~i~~~~v~~i~~~~~~v~~v~~~~g~~i~a~~-VV~A 120 (232)
T 2cul_A 70 FHARAKYLLEGLRPLHLFQATATGLLLEGNRVVGVRTWEGPPARGEK-VVLA 120 (232)
T ss_dssp HHHHHHHHHHTCTTEEEEECCEEEEEEETTEEEEEEETTSCCEECSE-EEEC
T ss_pred HHHHHHHHHHcCCCcEEEEeEEEEEEEeCCEEEEEEECCCCEEECCE-EEEC
Confidence 456778889987 77777432 555566677788888888888888 5555
No 77
>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*
Probab=34.60 E-value=23 Score=31.07 Aligned_cols=43 Identities=2% Similarity=0.013 Sum_probs=31.7
Q ss_pred hhhhhHHHHHHhcCeeeeee---eeeeeceeeEEEecCCCccCccCC
Q psy895 4 LSFLKDKEIEKKGGKRLRKI---TLVIRTRSIYCYECDSWKDRRCLD 47 (269)
Q Consensus 4 ~~~~~~~~i~~~gg~~~~~~---~~~~~~~~i~~~~~~~~~~~~~~~ 47 (269)
+...|.+.+++.|++++.+. .++.++.++..++++++ ..+|+.
T Consensus 176 ~~~~l~~~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~ 221 (405)
T 2gag_B 176 VAWAFARKANEMGVDIIQNCEVTGFIKDGEKVTGVKTTRG-TIHAGK 221 (405)
T ss_dssp HHHHHHHHHHHTTCEEECSCCEEEEEESSSBEEEEEETTC-CEEEEE
T ss_pred HHHHHHHHHHHCCCEEEcCCeEEEEEEeCCEEEEEEeCCc-eEECCE
Confidence 45668889999999998874 55555666777888776 566666
No 78
>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*
Probab=34.34 E-value=18 Score=34.59 Aligned_cols=48 Identities=4% Similarity=-0.101 Sum_probs=29.6
Q ss_pred hhhhhHHHHHHhc-Ceeeeee---eeeeeceeeEEEec---CCCc--cCccCCCCCCC
Q psy895 4 LSFLKDKEIEKKG-GKRLRKI---TLVIRTRSIYCYEC---DSWK--DRRCLDPFNYS 52 (269)
Q Consensus 4 ~~~~~~~~i~~~g-g~~~~~~---~~~~~~~~i~~~~~---~~~~--~~~~~~~fi~~ 52 (269)
|...|.+.++++| .+++.+. .++.++.++..+.+ ++++ .++|+. +|-.
T Consensus 136 l~~~L~~~~~~~gnv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~A~~-VVlA 192 (602)
T 1kf6_A 136 MLHTLFQTSLQFPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANA-VVMA 192 (602)
T ss_dssp HHHHHHHHHTTCTTEEEEETEEEEEEEEETTEEEEEEEEETTTTEEEEEECSC-EEEC
T ss_pred HHHHHHHHHHhCCCcEEEeCCEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCe-EEEC
Confidence 3456777788888 7888764 55556666555443 5555 466666 4433
No 79
>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*
Probab=34.27 E-value=24 Score=30.55 Aligned_cols=46 Identities=15% Similarity=0.114 Sum_probs=33.3
Q ss_pred hhhhhHHHHHHhcCeeeeee---eeeeeceeeEEEecCCCccCccCCCCCCC
Q psy895 4 LSFLKDKEIEKKGGKRLRKI---TLVIRTRSIYCYECDSWKDRRCLDPFNYS 52 (269)
Q Consensus 4 ~~~~~~~~i~~~gg~~~~~~---~~~~~~~~i~~~~~~~~~~~~~~~~fi~~ 52 (269)
+...|.+.++++|++++.+. .++.++.. ..++++++ ..+|+. +|.+
T Consensus 156 ~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~-~~V~t~~g-~i~a~~-VV~A 204 (381)
T 3nyc_A 156 LHQGYLRGIRRNQGQVLCNHEALEIRRVDGA-WEVRCDAG-SYRAAV-LVNA 204 (381)
T ss_dssp HHHHHHHHHHHTTCEEESSCCCCEEEEETTE-EEEECSSE-EEEESE-EEEC
T ss_pred HHHHHHHHHHHCCCEEEcCCEEEEEEEeCCe-EEEEeCCC-EEEcCE-EEEC
Confidence 45678889999999998764 66666555 56788877 677877 4444
No 80
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A
Probab=34.05 E-value=31 Score=32.12 Aligned_cols=38 Identities=11% Similarity=-0.002 Sum_probs=27.2
Q ss_pred CCCCCCCcEEEcCCCCCCCCC-c-cch-HHHHHHHHHHHHh
Q psy895 230 SPFTLIPHLLLCGSGAHPGGG-V-CGA-PGYIAAQMVNRLM 267 (269)
Q Consensus 230 ~~~t~i~nLyl~G~~~~pG~G-v-~gv-sg~~~a~~il~~~ 267 (269)
..+|.++|+|.+||.+..... + ..+ .|..+|..|...+
T Consensus 475 ~~~ts~p~VfA~GD~~~~~~~~~~~A~~~g~~aa~~i~~~L 515 (521)
T 1hyu_A 475 KCETSVKGVFAAGDCTTVPYKQIIIATGEGAKASLSAFDYL 515 (521)
T ss_dssp TCBCSSTTEEECSTTBCCSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCEEEeecccCCCcceeeehHHhHHHHHHHHHHHH
Confidence 356789999999999974322 2 223 7888888887765
No 81
>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*
Probab=33.03 E-value=28 Score=31.30 Aligned_cols=47 Identities=4% Similarity=-0.143 Sum_probs=33.8
Q ss_pred hhhhhHHHHHHhcCeeeeee---eeee---------------eceeeEEEecCCCccC--ccCCCCCCC
Q psy895 4 LSFLKDKEIEKKGGKRLRKI---TLVI---------------RTRSIYCYECDSWKDR--RCLDPFNYS 52 (269)
Q Consensus 4 ~~~~~~~~i~~~gg~~~~~~---~~~~---------------~~~~i~~~~~~~~~~~--~~~~~fi~~ 52 (269)
+...|.+.++++|++++.+. .++. ++.++..++++++ .. +|+. +|.+
T Consensus 183 l~~~L~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~v~~V~t~~g-~i~~~Ad~-VV~A 249 (448)
T 3axb_A 183 VVDYYYRRASGAGVEFIFGRRVVGVELKPRVELGIEGEPLPWQEARASAAVLSDG-TRVEVGEK-LVVA 249 (448)
T ss_dssp HHHHHHHHHHHTTCEEEESCCEEEEEEEESSCCCCTTSSCTTSCEEEEEEEETTS-CEEEEEEE-EEEC
T ss_pred HHHHHHHHHHhCCCEEEcCCeEEEEEecccccccccccccccCCCceEEEEeCCC-EEeecCCE-EEEC
Confidence 55678889999999998874 5555 4566777888877 45 7776 4433
No 82
>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}
Probab=32.70 E-value=22 Score=30.73 Aligned_cols=31 Identities=39% Similarity=0.723 Sum_probs=23.2
Q ss_pred CCcEEEcCCCCCC-----CCCccc-h-HHHHHHHHHHH
Q psy895 235 IPHLLLCGSGAHP-----GGGVCG-A-PGYIAAQMVNR 265 (269)
Q Consensus 235 i~nLyl~G~~~~p-----G~Gv~g-v-sg~~~a~~il~ 265 (269)
-+|++++||.+|. |.|+.. + +|.++|+.|.+
T Consensus 276 ~~~v~lvGDAA~~~~P~~G~Gi~~A~~~g~~~A~~i~~ 313 (397)
T 3oz2_A 276 MPGLMLVGDAARLIDPITGGGIANAIVSGMYAAQVTKE 313 (397)
T ss_dssp ETTEEECGGGGTCSCTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred eeeEEEcccccccCCCCcchhHHHHHHHHHHHHHHHHH
Confidence 5799999998862 556653 3 89988888764
No 83
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*
Probab=32.10 E-value=41 Score=29.12 Aligned_cols=46 Identities=9% Similarity=-0.037 Sum_probs=31.5
Q ss_pred hhhhhHHHHHHhcCeeeeee---eeeeeceeeEEEecCCCccCccCCCCCCC
Q psy895 4 LSFLKDKEIEKKGGKRLRKI---TLVIRTRSIYCYECDSWKDRRCLDPFNYS 52 (269)
Q Consensus 4 ~~~~~~~~i~~~gg~~~~~~---~~~~~~~~i~~~~~~~~~~~~~~~~fi~~ 52 (269)
+...|.+.+++.|++++.+. .++.++..+ .+.++++ ..+|+. +|.+
T Consensus 166 ~~~~l~~~~~~~g~~i~~~~~v~~i~~~~~~~-~v~~~~g-~~~a~~-vV~A 214 (382)
T 1ryi_A 166 VCKAYVKAAKMLGAEIFEHTPVLHVERDGEAL-FIKTPSG-DVWANH-VVVA 214 (382)
T ss_dssp HHHHHHHHHHHTTCEEETTCCCCEEECSSSSE-EEEETTE-EEEEEE-EEEC
T ss_pred HHHHHHHHHHHCCCEEEcCCcEEEEEEECCEE-EEEcCCc-eEEcCE-EEEC
Confidence 45678888899999988764 555555555 5677766 567777 4444
No 84
>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}
Probab=31.67 E-value=28 Score=31.95 Aligned_cols=36 Identities=17% Similarity=0.211 Sum_probs=27.0
Q ss_pred CCCCCCcEEEcCCCCCCCCCc-c-ch-HHHHHHHHHHHHh
Q psy895 231 PFTLIPHLLLCGSGAHPGGGV-C-GA-PGYIAAQMVNRLM 267 (269)
Q Consensus 231 ~~t~i~nLyl~G~~~~pG~Gv-~-gv-sg~~~a~~il~~~ 267 (269)
.+|.++|+|.+||.+. |... . .+ .|+.+|..|.+.+
T Consensus 405 ~~Ts~~~VfA~GD~~~-g~~~v~~A~~~G~~aA~~i~~~L 443 (456)
T 2vdc_G 405 KMTNMDGVFAAGDIVR-GASLVVWAIRDGRDAAEGIHAYA 443 (456)
T ss_dssp CBCSSTTEEECGGGGS-SCCSHHHHHHHHHHHHHHHHHHH
T ss_pred CcCCCCCEEEeccccC-CchHHHHHHHHHHHHHHHHHHHh
Confidence 5688999999999985 2322 2 23 8999999998765
No 85
>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*
Probab=31.32 E-value=24 Score=31.34 Aligned_cols=37 Identities=16% Similarity=0.133 Sum_probs=26.4
Q ss_pred CCC-CCCcEEEcCCCCCC-CCCc--cch-HHHHHHHHHHHHh
Q psy895 231 PFT-LIPHLLLCGSGAHP-GGGV--CGA-PGYIAAQMVNRLM 267 (269)
Q Consensus 231 ~~t-~i~nLyl~G~~~~p-G~Gv--~gv-sg~~~a~~il~~~ 267 (269)
.+| ..+|+|.+||.+.. .... ... .|..+|+.|.+.+
T Consensus 294 ~~~~~~~~vfa~GD~~~~~~~~~~~~A~~q~~~aa~~i~~~l 335 (409)
T 3h8l_A 294 MVSIKYDNVYAVGDANSMTVPKLGYLAVMTGRIAAQHLANRL 335 (409)
T ss_dssp SBBSSCTTEEECGGGBTTCCSCCHHHHHHHHHHHHHHHHHHT
T ss_pred cccCCCCCEEEeehhccCCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 456 58999999999963 1222 122 7889999998876
No 86
>3h28_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3h27_A* 3h29_A* 3hyv_A* 3hyw_A* 3hyx_A*
Probab=30.50 E-value=35 Score=30.60 Aligned_cols=37 Identities=11% Similarity=-0.086 Sum_probs=26.1
Q ss_pred CCC-CCCcEEEcCCCCCCCC--------Ccc-----ch-HHHHHHHHHHHHh
Q psy895 231 PFT-LIPHLLLCGSGAHPGG--------GVC-----GA-PGYIAAQMVNRLM 267 (269)
Q Consensus 231 ~~t-~i~nLyl~G~~~~pG~--------Gv~-----gv-sg~~~a~~il~~~ 267 (269)
.+| ..+|+|.+||.+...+ +.+ .+ .|..+|+.|...+
T Consensus 281 l~t~~~~~Ifa~GD~~~~~~~~~~~~~~~~pk~~~~A~~~g~~aa~ni~~~l 332 (430)
T 3h28_A 281 FQNPTYKNIFGVGVVTAIPPIEKTPIPTGVPKTGMMIEQMAMAVAHNIVNDI 332 (430)
T ss_dssp SBCSSSTTEEECSTTBCCCCSSCCSSCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCEEEEEeeeccCCccCCCCCCCCCchHHHHHHHHHHHHHHHHHHh
Confidence 456 5999999999986311 122 12 7888999888775
No 87
>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}
Probab=30.40 E-value=49 Score=28.68 Aligned_cols=30 Identities=17% Similarity=0.288 Sum_probs=21.8
Q ss_pred CCcEEEcCCCCCCCCCccc--hHHHHHHHHHHHH
Q psy895 235 IPHLLLCGSGAHPGGGVCG--APGYIAAQMVNRL 266 (269)
Q Consensus 235 i~nLyl~G~~~~pG~Gv~g--vsg~~~a~~il~~ 266 (269)
.+|||++.... |+|+.. ..|..+|+.|++.
T Consensus 324 ~~~~~~~~G~~--g~G~~~a~~~g~~la~~i~~~ 355 (382)
T 1y56_B 324 LNDYYIAAGFS--GHGFMMAPAVGEMVAELITKG 355 (382)
T ss_dssp SBTEEEEECCT--TCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEEecC--cchHhhhHHHHHHHHHHHhCC
Confidence 68999875433 567764 3888889888764
No 88
>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}
Probab=29.38 E-value=18 Score=32.90 Aligned_cols=36 Identities=25% Similarity=0.281 Sum_probs=0.0
Q ss_pred CCCCCCC-CCcEEEcC---CCCCCCCCccch----HHHHHHHHH
Q psy895 228 PSSPFTL-IPHLLLCG---SGAHPGGGVCGA----PGYIAAQMV 263 (269)
Q Consensus 228 ~~~~~t~-i~nLyl~G---~~~~pG~Gv~gv----sg~~~a~~i 263 (269)
+....++ +|||||+| |+.-+-||..-- ||+.|++.+
T Consensus 374 ~~tmesk~~~gLy~aGE~lD~~~~~GGynlq~a~stG~~ag~~~ 417 (417)
T 3v76_A 374 SRTMQAKEVPGLYFVGECVDVTGWLGGYNFQWAWASGFVAGQDV 417 (417)
T ss_dssp TTTCBBTTSTTEEECGGGBSEEECSSSHHHHHHHHHHHHHHHHC
T ss_pred hhhccccCCCCeEEEEEeEecccCCCCHHHHHHHHHHHHHhCcC
No 89
>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*
Probab=28.62 E-value=27 Score=33.99 Aligned_cols=33 Identities=18% Similarity=0.221 Sum_probs=0.0
Q ss_pred CCCCCcEEEcCCCCCCCCCccc-------------hHHHHHHHHHHHH
Q psy895 232 FTLIPHLLLCGSGAHPGGGVCG-------------APGYIAAQMVNRL 266 (269)
Q Consensus 232 ~t~i~nLyl~G~~~~pG~Gv~g-------------vsg~~~a~~il~~ 266 (269)
+|+|||||-+|..+ ++|+.| +.|+.|++.+.+.
T Consensus 382 ~v~IpGLYAaGE~a--~~g~hGanrlggnsL~~~~vfGr~Ag~~aa~~ 427 (660)
T 2bs2_A 382 EAKLKGLFSAGEAA--CWDMHGFNRLGGNSVSEAVVAGMIVGEYFAEH 427 (660)
T ss_dssp BCSSBTEEECGGGE--ECCSSTTCCCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred ceecCCEEeccccc--cccccCCCCCchHHHHHHHHHHHHHHHHHHHH
No 90
>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}
Probab=27.55 E-value=1.3e+02 Score=28.52 Aligned_cols=89 Identities=13% Similarity=0.003 Sum_probs=44.6
Q ss_pred CCCCCcceEEEE-----ecChhHHHHhhCCCCCccccccccccccccCCCCCCCCCCCCCCC-CCcEEEcCCCCCCCC-C
Q psy895 178 CPGFTQDIVGYE-----ILTPPDLEKEFGLTGGNIFHGALSLNQLLFNRPLPIQGPSSPFTL-IPHLLLCGSGAHPGG-G 250 (269)
Q Consensus 178 ~P~i~~~I~~~~-----~~TP~t~~~y~~~~~GsiyG~~~~~~q~~~~rp~~~~~~~~~~t~-i~nLyl~G~~~~pG~-G 250 (269)
-|.+++.+.... +.|-..++.|.-...++.|+..-+.. ++. ++..+.+...-|.. ++||+.+.+|++|-. +
T Consensus 474 ~~~~~~~~~~e~~p~~~~~sd~~~~~~ir~~~~t~~H~~GTc~-Mg~-~~~~~VVD~~lrV~Gv~~LrVvDaSv~P~~~~ 551 (577)
T 3q9t_A 474 GEGFKDLVESEYPWEMPLDSDKEMHRAVLDRCQTAFHPTGTAR-LSK-NIDQGVVDPKLKVHGIKKLRVADASVIPIIPD 551 (577)
T ss_dssp STTGGGTEEEEESSCCCTTCHHHHHHHHHHHCEECSCCBCTTC-BCS-STTTCSBCTTCBBTTCBSEEECSGGGCSSCCS
T ss_pred ChhhhhccccccCCCCCcCCHHHHHHHHHhcccccccccccee-cCC-CCCCceECCCCeEeCCCCcEEeecccccCCCC
Confidence 477776554332 23445566664333344444322221 110 11111220022333 899999999999742 2
Q ss_pred c-cc----hHHHHHHHHHHHHhc
Q psy895 251 V-CG----APGYIAAQMVNRLMR 268 (269)
Q Consensus 251 v-~g----vsg~~~a~~il~~~~ 268 (269)
. +. +=|..+|+.|+++.+
T Consensus 552 ~n~~a~~~~iaekaAd~I~~~~~ 574 (577)
T 3q9t_A 552 CRIQNSVYAVGEKCADMIKAEHK 574 (577)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHCT
T ss_pred CccHHHHHHHHHHHHHHHHhhhh
Confidence 1 21 256677777877654
No 91
>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*
Probab=26.56 E-value=39 Score=32.54 Aligned_cols=43 Identities=7% Similarity=-0.015 Sum_probs=27.6
Q ss_pred hhhhHHHHHHh-cC-eeeeee---eeeeece---eeEEEec---CCCc--cCccCC
Q psy895 5 SFLKDKEIEKK-GG-KRLRKI---TLVIRTR---SIYCYEC---DSWK--DRRCLD 47 (269)
Q Consensus 5 ~~~~~~~i~~~-gg-~~~~~~---~~~~~~~---~i~~~~~---~~~~--~~~~~~ 47 (269)
...|.+.+++. |. +++.+. .++.++. ++..+.+ .+++ .++|+.
T Consensus 154 ~~~l~~~~~~~~gv~~i~~~~~v~~L~~~~~~~g~v~Gv~~~~~~~g~~~~i~A~~ 209 (643)
T 1jnr_A 154 KPIIAEAAKMAVGEENIYERVFIFELLKDNNDPNAVAGAVGFSVREPKFYVFKAKA 209 (643)
T ss_dssp HHHHHHHHHHHHCGGGEECSEEEEEEEECTTCTTBEEEEEEEESSSSCEEEEECSE
T ss_pred HHHHHHHHHhcCCCcEEEecCEEEEEEEcCCccceeEEEEEEEecCCcEEEEEcCE
Confidence 35677778888 99 888874 5666555 6766554 4443 456655
No 92
>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*
Probab=26.20 E-value=40 Score=33.40 Aligned_cols=47 Identities=9% Similarity=-0.202 Sum_probs=35.4
Q ss_pred hhhhhHHHHHHhcCeeeeee---eeeeeceeeEEEecCCCccCccCCCCCCC
Q psy895 4 LSFLKDKEIEKKGGKRLRKI---TLVIRTRSIYCYECDSWKDRRCLDPFNYS 52 (269)
Q Consensus 4 ~~~~~~~~i~~~gg~~~~~~---~~~~~~~~i~~~~~~~~~~~~~~~~fi~~ 52 (269)
+...|.+.+++.|++++.+. .++.++.++..+.++++ ..+|+. +|.+
T Consensus 153 l~~~L~~~a~~~Gv~i~~~t~V~~i~~~~~~v~~V~t~~G-~i~Ad~-VV~A 202 (830)
T 1pj5_A 153 AVQLLIKRTESAGVTYRGSTTVTGIEQSGGRVTGVQTADG-VIPADI-VVSC 202 (830)
T ss_dssp HHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTE-EEECSE-EEEC
T ss_pred HHHHHHHHHHHcCCEEECCceEEEEEEeCCEEEEEEECCc-EEECCE-EEEC
Confidence 45678899999999998764 56666677878888877 577777 4444
No 93
>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*
Probab=25.52 E-value=45 Score=30.44 Aligned_cols=37 Identities=11% Similarity=-0.024 Sum_probs=25.9
Q ss_pred CCCCCCCcEEEcCCCCCCCCCc-cc-h-HHHHHHHHHHHH
Q psy895 230 SPFTLIPHLLLCGSGAHPGGGV-CG-A-PGYIAAQMVNRL 266 (269)
Q Consensus 230 ~~~t~i~nLyl~G~~~~pG~Gv-~g-v-sg~~~a~~il~~ 266 (269)
..+|.++|+|.+||.+..+... +. + .|+.+|+.|++.
T Consensus 313 ~~~t~~~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~g~ 352 (483)
T 3dgh_A 313 QEATNVANIYAVGDIIYGKPELTPVAVLAGRLLARRLYGG 352 (483)
T ss_dssp TCBCSSTTEEECSTTBTTSCCCHHHHHHHHHHHHHHHHSC
T ss_pred CCccCCCCEEEEEcccCCCCccHHHHHHHHHHHHHHHcCC
Confidence 3578899999999998421222 21 2 788999988764
No 94
>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}
Probab=25.35 E-value=29 Score=31.00 Aligned_cols=34 Identities=24% Similarity=0.303 Sum_probs=24.1
Q ss_pred CCcEEEcCCCCC-------CCCCccc--hHHHHHHHHHHHHhc
Q psy895 235 IPHLLLCGSGAH-------PGGGVCG--APGYIAAQMVNRLMR 268 (269)
Q Consensus 235 i~nLyl~G~~~~-------pG~Gv~g--vsg~~~a~~il~~~~ 268 (269)
+||||.+|=.+. +|.=+-+ +||..+|+.|+++++
T Consensus 293 ~~gl~~~gm~~~~~~g~~rmgp~fg~m~~sg~~~a~~~~~~~~ 335 (344)
T 3jsk_A 293 VPGLIVGGMELSEIDGANRMGPTFGAMALSGVKAAHEAIRVFD 335 (344)
T ss_dssp ETTEEECGGGHHHHHTCEECCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCEEEechhhHhhcCCCCCCcccceeeecCHHHHHHHHHHHH
Confidence 799999995543 2221112 399999999999874
No 95
>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*
Probab=24.63 E-value=49 Score=29.80 Aligned_cols=48 Identities=6% Similarity=-0.036 Sum_probs=35.2
Q ss_pred hhhhhHHHHHHhcCeeeeee---eeee--eceeeEEEecCCCccCccCCCCCCC
Q psy895 4 LSFLKDKEIEKKGGKRLRKI---TLVI--RTRSIYCYECDSWKDRRCLDPFNYS 52 (269)
Q Consensus 4 ~~~~~~~~i~~~gg~~~~~~---~~~~--~~~~i~~~~~~~~~~~~~~~~fi~~ 52 (269)
++..+.+.+++.|.+++.+. ++.. ++.++..+.+++++...|+. ++..
T Consensus 193 ~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~-Vv~a 245 (431)
T 1q1r_A 193 VSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADL-VIAG 245 (431)
T ss_dssp HHHHHHHHHHHHTCEEECSCCEEEEEECTTTCCEEEEEETTSCEEECSE-EEEC
T ss_pred HHHHHHHHHHhCCeEEEeCCEEEEEEeccCCCcEEEEEeCCCCEEEcCE-EEEC
Confidence 45677889999999998875 4433 34567778888888788887 6555
No 96
>2l42_A DNA-binding protein RAP1; BRCT domain, protein binding; NMR {Saccharomyces cerevisiae}
Probab=24.42 E-value=28 Score=25.52 Aligned_cols=19 Identities=21% Similarity=0.184 Sum_probs=16.5
Q ss_pred hhhHHHHHHhcCeeeeeee
Q psy895 6 FLKDKEIEKKGGKRLRKIT 24 (269)
Q Consensus 6 ~~~~~~i~~~gg~~~~~~~ 24 (269)
..|.+.|+++||+|+...-
T Consensus 33 d~L~~lI~~nGG~Vl~~lP 51 (106)
T 2l42_A 33 DQLARLIRANGGEVLDSKP 51 (106)
T ss_dssp HHHHHHHHTTTSCCCEECC
T ss_pred HHHHHHHHhcCcEEhhhCc
Confidence 5789999999999998853
No 97
>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*
Probab=24.31 E-value=31 Score=31.61 Aligned_cols=35 Identities=14% Similarity=0.085 Sum_probs=26.0
Q ss_pred CCCCcEEEcCCCCCCCCCccc--h-HHHHHHHHHHHHh
Q psy895 233 TLIPHLLLCGSGAHPGGGVCG--A-PGYIAAQMVNRLM 267 (269)
Q Consensus 233 t~i~nLyl~G~~~~pG~Gv~g--v-sg~~~a~~il~~~ 267 (269)
|.++|+|.+|+......|+.+ + .|..+|..|++++
T Consensus 349 t~~pgvya~GD~~~gp~~~i~~a~~~g~~~a~~i~~~l 386 (456)
T 1lqt_A 349 NGSPNEYVVGWIKRGPTGVIGTNKKDAQDTVDTLIKNL 386 (456)
T ss_dssp TTCSSEEECTHHHHCSCSCTTHHHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeccCCCCchhHHHHHHHHHHHHHHHHHHH
Confidence 568999999998752135443 2 7899999998875
No 98
>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}
Probab=24.19 E-value=31 Score=32.58 Aligned_cols=48 Identities=10% Similarity=0.059 Sum_probs=33.9
Q ss_pred hhhhhHHHHHHhcCeeeeee---eeeeeceeeEEEecCC-----CccCccCCCCCCC
Q psy895 4 LSFLKDKEIEKKGGKRLRKI---TLVIRTRSIYCYECDS-----WKDRRCLDPFNYS 52 (269)
Q Consensus 4 ~~~~~~~~i~~~gg~~~~~~---~~~~~~~~i~~~~~~~-----~~~~~~~~~fi~~ 52 (269)
|...|.+..+++|++++.+. .++.++.++..+++.+ ....+|+. +|.+
T Consensus 172 l~~~L~~~a~~~G~~i~~~~~V~~l~~~~g~v~gV~~~d~~tg~~~~i~A~~-VV~A 227 (561)
T 3da1_A 172 LTLEIMKEAVARGAVALNYMKVESFIYDQGKVVGVVAKDRLTDTTHTIYAKK-VVNA 227 (561)
T ss_dssp HHHHHHHHHHHTTCEEEESEEEEEEEEETTEEEEEEEEETTTCCEEEEEEEE-EEEC
T ss_pred HHHHHHHHHHHcCCEEEcCCEEEEEEEcCCeEEEEEEEEcCCCceEEEECCE-EEEC
Confidence 45678888999999999874 6666777777777654 23566776 4444
No 99
>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*
Probab=23.75 E-value=38 Score=30.23 Aligned_cols=48 Identities=4% Similarity=-0.195 Sum_probs=35.8
Q ss_pred hhhhhHHHHHHhcCeeeeee---eeeeeceeeEEEecCCCccCccCCCCCCCC
Q psy895 4 LSFLKDKEIEKKGGKRLRKI---TLVIRTRSIYCYECDSWKDRRCLDPFNYSV 53 (269)
Q Consensus 4 ~~~~~~~~i~~~gg~~~~~~---~~~~~~~~i~~~~~~~~~~~~~~~~fi~~~ 53 (269)
++..+.+.+++.|.+++.+. +++.+ .++..++.++++...|+. ++..+
T Consensus 187 ~~~~l~~~l~~~GV~i~~~~~v~~i~~~-~~~~~v~~~dg~~i~aD~-Vv~a~ 237 (410)
T 3ef6_A 187 IGAWLRGLLTELGVQVELGTGVVGFSGE-GQLEQVMASDGRSFVADS-ALICV 237 (410)
T ss_dssp HHHHHHHHHHHHTCEEECSCCEEEEECS-SSCCEEEETTSCEEECSE-EEECS
T ss_pred HHHHHHHHHHHCCCEEEeCCEEEEEecc-CcEEEEEECCCCEEEcCE-EEEee
Confidence 45678888999999998774 44333 367788888998888888 66653
No 100
>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*
Probab=23.51 E-value=2.3e+02 Score=26.84 Aligned_cols=34 Identities=9% Similarity=-0.017 Sum_probs=23.8
Q ss_pred CCcEEEcCCCCCCCC--Cccc----hHHHHHHHHHHHHhc
Q psy895 235 IPHLLLCGSGAHPGG--GVCG----APGYIAAQMVNRLMR 268 (269)
Q Consensus 235 i~nLyl~G~~~~pG~--Gv~g----vsg~~~a~~il~~~~ 268 (269)
++||+.+.+|++|-. |=+. +=|..+|+.|+++.+
T Consensus 541 v~~LrVvDaSv~P~~~~~n~~~t~~aiaeraAd~I~~~~~ 580 (583)
T 3qvp_A 541 VQGLRVIDGSIPPTQMSSHVMTVFYAMALKISDAILEDYA 580 (583)
T ss_dssp CBSEEECSTTCCSSCCSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEeecccCCCCCCcCcHHHHHHHHHHHHHHHHHhhh
Confidence 899999999999743 1121 246677777777654
No 101
>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*
Probab=23.25 E-value=44 Score=30.36 Aligned_cols=36 Identities=14% Similarity=0.137 Sum_probs=25.7
Q ss_pred CCCCCCCcEEEcCCCCCCCCCcc-c-h-HHHHHHHHHHHH
Q psy895 230 SPFTLIPHLLLCGSGAHPGGGVC-G-A-PGYIAAQMVNRL 266 (269)
Q Consensus 230 ~~~t~i~nLyl~G~~~~pG~Gv~-g-v-sg~~~a~~il~~ 266 (269)
..+|.++|+|.+||.+.. .... . + .|+.+|+.|++.
T Consensus 305 ~~~t~~~~Iya~GD~~~~-~~~~~~A~~~g~~aa~~i~g~ 343 (476)
T 3lad_A 305 YCATSVPGVYAIGDVVRG-AMLAHKASEEGVVVAERIAGH 343 (476)
T ss_dssp TSBCSSTTEEECGGGSSS-CCCHHHHHHHHHHHHHHHHHC
T ss_pred CcccCCCCEEEEEccCCC-cccHHHHHHHHHHHHHHhcCC
Confidence 356889999999999831 2221 1 2 788999988864
No 102
>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*
Probab=23.22 E-value=50 Score=31.72 Aligned_cols=43 Identities=5% Similarity=-0.115 Sum_probs=32.3
Q ss_pred hhhhhHHHHHHhcCeeeeee---eeeeeceeeEEEecCCCccCccCC
Q psy895 4 LSFLKDKEIEKKGGKRLRKI---TLVIRTRSIYCYECDSWKDRRCLD 47 (269)
Q Consensus 4 ~~~~~~~~i~~~gg~~~~~~---~~~~~~~~i~~~~~~~~~~~~~~~ 47 (269)
+...|.+.+++.|++++.+. .++.++..+ .++++++...+|+.
T Consensus 419 l~~aL~~~a~~~Gv~i~~~t~V~~l~~~~~~v-~V~t~~G~~i~Ad~ 464 (676)
T 3ps9_A 419 LTRNVLELAQQQGLQIYYQYQLQNFSRKDDCW-LLNFAGDQQATHSV 464 (676)
T ss_dssp HHHHHHHHHHHTTCEEEESCCEEEEEEETTEE-EEEETTSCEEEESE
T ss_pred HHHHHHHHHHhCCCEEEeCCeeeEEEEeCCeE-EEEECCCCEEECCE
Confidence 45678888899999998874 666666665 67777777777777
No 103
>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7
Probab=23.15 E-value=53 Score=28.94 Aligned_cols=31 Identities=6% Similarity=-0.062 Sum_probs=22.6
Q ss_pred CCcEEEcCCCC-CCCCCccc-h-HHHHHHHHHHH
Q psy895 235 IPHLLLCGSGA-HPGGGVCG-A-PGYIAAQMVNR 265 (269)
Q Consensus 235 i~nLyl~G~~~-~pG~Gv~g-v-sg~~~a~~il~ 265 (269)
.+|+++||... +-+.++.. + ||..+|+++++
T Consensus 332 ~~~~~~~Gr~~~~~y~~~~d~i~sa~~~a~~~~~ 365 (367)
T 1i8t_A 332 EDKVIFGGRLAEYKYYDMHQVISAALYQVKNIMS 365 (367)
T ss_dssp CTTEEECSTTTTTSCCCHHHHHHHHHHHHHHHHS
T ss_pred CCCEEEcccceeeEecCHHHHHHHHHHHHHHHhc
Confidence 48999999864 33445543 3 99999999874
No 104
>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}
Probab=22.70 E-value=22 Score=31.86 Aligned_cols=37 Identities=24% Similarity=0.247 Sum_probs=25.8
Q ss_pred CCCCCCCcEEEcCCCCC-CC--CCcc--ch-HHHHHHHHHHHH
Q psy895 230 SPFTLIPHLLLCGSGAH-PG--GGVC--GA-PGYIAAQMVNRL 266 (269)
Q Consensus 230 ~~~t~i~nLyl~G~~~~-pG--~Gv~--gv-sg~~~a~~il~~ 266 (269)
..+|..+|+|.+||.+. ++ .+.. .+ .|..+|..|++.
T Consensus 252 ~~~t~~~~IyA~GD~a~~~~~~~~~~~~A~~qg~~aa~~i~g~ 294 (385)
T 3klj_A 252 HMETSIKDIYACGDVAEFYGKNPGLINIANKQGEVAGLNACGE 294 (385)
T ss_dssp TCBCSSTTEEECGGGEEETTBCCCCHHHHHHHHHHHHHHHTTC
T ss_pred CcccCCCCEEEEEeeEecCCCcccHHHHHHHHHHHHHHHhcCC
Confidence 35788999999999985 21 1211 12 788899888764
No 105
>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}
Probab=22.65 E-value=37 Score=31.12 Aligned_cols=36 Identities=14% Similarity=0.075 Sum_probs=25.6
Q ss_pred CCCCCCCcEEEcCCCCCCCCCcc--ch-HHHHHHHHHHHH
Q psy895 230 SPFTLIPHLLLCGSGAHPGGGVC--GA-PGYIAAQMVNRL 266 (269)
Q Consensus 230 ~~~t~i~nLyl~G~~~~pG~Gv~--gv-sg~~~a~~il~~ 266 (269)
..+|.++|+|.+||.+.. .... .. .|+.+|+.|++.
T Consensus 325 ~~~t~~~~IyA~GD~~~~-~~~~~~A~~~g~~aa~~i~g~ 363 (491)
T 3urh_A 325 HFQTSIAGVYAIGDVVRG-PMLAHKAEDEGVAVAEIIAGQ 363 (491)
T ss_dssp TCBCSSTTEEECGGGSSS-CCCHHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCCCEEEEEecCCC-ccchhHHHHHHHHHHHHHcCC
Confidence 457889999999999832 2222 12 788888888764
No 106
>2jtv_A Protein of unknown function; protein with unknown function RPA3401, northeast structural consortium, NESG, PSI-2, structural genomics; NMR {Rhodopseudomonas palustris}
Probab=22.47 E-value=40 Score=22.11 Aligned_cols=15 Identities=27% Similarity=0.477 Sum_probs=13.2
Q ss_pred hhhhhHHHHHHhcCe
Q psy895 4 LSFLKDKEIEKKGGK 18 (269)
Q Consensus 4 ~~~~~~~~i~~~gg~ 18 (269)
--|.||++|+..||.
T Consensus 5 ddfrlirei~~~ggr 19 (65)
T 2jtv_A 5 DDFKLIRDIHSTGGR 19 (65)
T ss_dssp HHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHhcCCc
Confidence 357899999999998
No 107
>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*
Probab=22.34 E-value=25 Score=30.34 Aligned_cols=32 Identities=16% Similarity=0.164 Sum_probs=22.4
Q ss_pred CCcEEEcCCCCCCCCCccc--hHHHHHHHHHHHHhc
Q psy895 235 IPHLLLCGSGAHPGGGVCG--APGYIAAQMVNRLMR 268 (269)
Q Consensus 235 i~nLyl~G~~~~pG~Gv~g--vsg~~~a~~il~~~~ 268 (269)
.+|||++.... |+|+.. ..|...|+.|.+.+.
T Consensus 302 ~~~~~~~~G~~--g~G~~~ap~~g~~la~li~~~~~ 335 (351)
T 3g3e_A 302 NTEVIHNYGHG--GYGLTIHWGCALEAAKLFGRILE 335 (351)
T ss_dssp CEEEEEEECCT--TCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEeCCC--cchHhhhHHHHHHHHHHHHHHHH
Confidence 58998865543 567764 378888888877643
No 108
>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*
Probab=22.09 E-value=46 Score=30.48 Aligned_cols=37 Identities=22% Similarity=0.195 Sum_probs=26.0
Q ss_pred CCCCCCCcEEEcCCCCCCCCCcc-c-h-HHHHHHHHHHHH
Q psy895 230 SPFTLIPHLLLCGSGAHPGGGVC-G-A-PGYIAAQMVNRL 266 (269)
Q Consensus 230 ~~~t~i~nLyl~G~~~~pG~Gv~-g-v-sg~~~a~~il~~ 266 (269)
..+|.++|+|.+||.+..+.... . + .|+.+|+.|++.
T Consensus 313 ~~~t~~~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~g~ 352 (488)
T 3dgz_A 313 QEATSVPHIYAIGDVAEGRPELTPTAIKAGKLLAQRLFGK 352 (488)
T ss_dssp TSBCSSTTEEECGGGBTTCCCCHHHHHHHHHHHHHHHHSC
T ss_pred CCccCCCCEEEeEEecCCCCcchhHHHHHHHHHHHHHcCC
Confidence 45788999999999974222221 1 2 788899988764
No 109
>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}
Probab=21.91 E-value=39 Score=30.76 Aligned_cols=36 Identities=17% Similarity=0.084 Sum_probs=26.2
Q ss_pred CCCCCCCcEEEcCCCCCCCCCcc--ch-HHHHHHHHHHHH
Q psy895 230 SPFTLIPHLLLCGSGAHPGGGVC--GA-PGYIAAQMVNRL 266 (269)
Q Consensus 230 ~~~t~i~nLyl~G~~~~pG~Gv~--gv-sg~~~a~~il~~ 266 (269)
..+|.++|+|.+||.+.. .... .+ .|+.+|+.|++.
T Consensus 295 ~~~t~~~~Iya~GD~~~~-~~~~~~A~~~g~~aa~~i~~~ 333 (466)
T 3l8k_A 295 TMKTNIPNVFATGDANGL-APYYHAAVRMSIAAANNIMAN 333 (466)
T ss_dssp TCBCSSTTEEECGGGTCS-CCSHHHHHHHHHHHHHHHHTT
T ss_pred CccCCCCCEEEEEecCCC-CccHhHHHHHHHHHHHHHhCC
Confidence 357889999999999852 2221 22 789999998864
No 110
>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*
Probab=21.88 E-value=43 Score=30.13 Aligned_cols=37 Identities=8% Similarity=-0.059 Sum_probs=25.7
Q ss_pred CCC-CCCcEEEcCCCCCCCC--------Ccc-----ch-HHHHHHHHHHHHh
Q psy895 231 PFT-LIPHLLLCGSGAHPGG--------GVC-----GA-PGYIAAQMVNRLM 267 (269)
Q Consensus 231 ~~t-~i~nLyl~G~~~~pG~--------Gv~-----gv-sg~~~a~~il~~~ 267 (269)
.+| ..+|+|.+||.+...+ +.+ .+ .|..+|+.|+..+
T Consensus 292 l~t~~~~~Ifa~GD~~~~~~~~~~~~~~~~pk~~~~A~~qg~~aA~ni~~~l 343 (437)
T 3sx6_A 292 QRSKKYANIFAAGIAIAIPPVETTPVPTGAPKTGYMIESMVSAAVHNIKADL 343 (437)
T ss_dssp SBBSSCTTEEECGGGBCCCCSCCCSSCCCCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred ccCCCCCCEEEEEEEeccCCcCCCcCCCCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 456 5999999999986311 122 12 7888898888775
No 111
>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*
Probab=21.56 E-value=74 Score=29.98 Aligned_cols=50 Identities=10% Similarity=0.016 Sum_probs=33.5
Q ss_pred hhhhHHHHHHhcCeeeeee---eeeeeceeeEEEecC---CC--ccCccCCCCCCCCCC
Q psy895 5 SFLKDKEIEKKGGKRLRKI---TLVIRTRSIYCYECD---SW--KDRRCLDPFNYSVLP 55 (269)
Q Consensus 5 ~~~~~~~i~~~gg~~~~~~---~~~~~~~~i~~~~~~---~~--~~~~~~~~fi~~~~p 55 (269)
...|.+..+++|++++.+. .++.++.++..+++. ++ ...+|+. +|.++-+
T Consensus 191 ~~~l~~~a~~~Ga~i~~~t~V~~l~~~~~~v~gV~~~d~~tg~~~~i~A~~-VV~AaG~ 248 (571)
T 2rgh_A 191 VIDNIKKAAEDGAYLVSKMKAVGFLYEGDQIVGVKARDLLTDEVIEIKAKL-VINTSGP 248 (571)
T ss_dssp HHHHHHHHHHTTCEEESSEEEEEEEEETTEEEEEEEEETTTCCEEEEEBSC-EEECCGG
T ss_pred HHHHHHHHHHcCCeEEeccEEEEEEEeCCEEEEEEEEEcCCCCEEEEEcCE-EEECCCh
Confidence 3457788899999999874 566666677777653 23 3577877 5555443
No 112
>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}
Probab=21.38 E-value=48 Score=30.10 Aligned_cols=39 Identities=10% Similarity=-0.129 Sum_probs=0.0
Q ss_pred CCCCCCcEEEcCCCCCCCCCccch--HHHHHHHHHHHHhcC
Q psy895 231 PFTLIPHLLLCGSGAHPGGGVCGA--PGYIAAQMVNRLMRK 269 (269)
Q Consensus 231 ~~t~i~nLyl~G~~~~pG~Gv~gv--sg~~~a~~il~~~~~ 269 (269)
.+|.++|+|.+||.+....-.+.+ .|+.+|+.|++...+
T Consensus 294 ~~t~~~~iya~GD~~~~~~~~~~A~~~g~~aa~~i~g~~~~ 334 (463)
T 4dna_A 294 SRTSTPGIYALGDVTDRVQLTPVAIHEAMCFIETEYKNNPT 334 (463)
T ss_dssp CBCSSTTEEECSGGGSSCCCHHHHHHHHHHHHHHHHSSCCC
T ss_pred CCCCCCCEEEEEecCCCCCChHHHHHHHHHHHHHHcCCCCc
No 113
>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}
Probab=21.35 E-value=71 Score=30.96 Aligned_cols=43 Identities=7% Similarity=0.048 Sum_probs=27.1
Q ss_pred hhhhHHHHHHh--cCeeeeee---eeeeece---eeEEEec---CCCc--cCccCC
Q psy895 5 SFLKDKEIEKK--GGKRLRKI---TLVIRTR---SIYCYEC---DSWK--DRRCLD 47 (269)
Q Consensus 5 ~~~~~~~i~~~--gg~~~~~~---~~~~~~~---~i~~~~~---~~~~--~~~~~~ 47 (269)
...|.+.++++ |.+++.+. .++.++. ++..+.+ .+++ .++|+.
T Consensus 169 ~~~L~~~a~~~~~gV~i~~~~~v~dLi~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~ 224 (662)
T 3gyx_A 169 KVIVAEAAKNALGQDRIIERIFIVKLLLDKNTPNRIAGAVGFNLRANEVHIFKANA 224 (662)
T ss_dssp HHHHHHHHHHHHCTTTEECSEEECCCEECSSSTTBEEEEEEEESSSSCEEEEECSE
T ss_pred HHHHHHHHHhcCCCcEEEEceEEEEEEEeCCccceEEEEEEEEcCCCcEEEEEeCE
Confidence 34677888888 88998885 5556555 6666544 3332 355555
No 114
>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}
Probab=21.02 E-value=51 Score=30.39 Aligned_cols=35 Identities=9% Similarity=0.111 Sum_probs=26.0
Q ss_pred CCCcEEEcCCCCCCCCCccch-HHHHHHHHHHHHhc
Q psy895 234 LIPHLLLCGSGAHPGGGVCGA-PGYIAAQMVNRLMR 268 (269)
Q Consensus 234 ~i~nLyl~G~~~~pG~Gv~gv-sg~~~a~~il~~~~ 268 (269)
.++|+|.+||.+.++.....+ .|..+|..|.+.++
T Consensus 342 s~~~vya~GD~~~~~~~~~A~~~g~~aa~~i~~~lg 377 (493)
T 1y56_A 342 IKDGIYVAGSAVSIKPHYANYLEGKLVGAYILKEFG 377 (493)
T ss_dssp EETTEEECSTTTCCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCCEEEEeccCCccCHHHHHHHHHHHHHHHHHHcC
Confidence 478999999999654322222 89999999988764
No 115
>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...
Probab=21.01 E-value=24 Score=34.01 Aligned_cols=32 Identities=28% Similarity=0.502 Sum_probs=0.0
Q ss_pred CCCCcEEEcCCCCCCCCCccc-------------hHHHHHHHHHHHH
Q psy895 233 TLIPHLLLCGSGAHPGGGVCG-------------APGYIAAQMVNRL 266 (269)
Q Consensus 233 t~i~nLyl~G~~~~pG~Gv~g-------------vsg~~~a~~il~~ 266 (269)
|+|||||-+|..+ ++|+.| +.|+.|++.+.+.
T Consensus 387 t~IpGLyAaGE~a--~~g~hGanrlggnsL~~~~vfGr~Ag~~aa~~ 431 (621)
T 2h88_A 387 KVVPGLYACGEAA--SASVHGANRLGANSLLDLVVFGRACALTIAET 431 (621)
T ss_dssp EEEEEEEECGGGE--ECSSSTTSCCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred cccCceEEccccc--cccccCCCCCchHhHHHHHHHHHHHHHHHHHh
No 116
>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*
Probab=20.66 E-value=48 Score=30.79 Aligned_cols=37 Identities=16% Similarity=0.046 Sum_probs=25.8
Q ss_pred CCCCCCCcEEEcCCCCCCCCCcc-c--hHHHHHHHHHHHH
Q psy895 230 SPFTLIPHLLLCGSGAHPGGGVC-G--APGYIAAQMVNRL 266 (269)
Q Consensus 230 ~~~t~i~nLyl~G~~~~pG~Gv~-g--vsg~~~a~~il~~ 266 (269)
..+|.++|+|.+||.+..+.... . ..|+.+|+.|++.
T Consensus 341 ~~~Ts~~~IyA~GD~~~g~~~~~~~A~~~g~~aa~~i~g~ 380 (519)
T 3qfa_A 341 EEQTNVPYIYAIGDILEDKVELTPVAIQAGRLLAQRLYAG 380 (519)
T ss_dssp TSBCSSTTEEECGGGBSSSCCCHHHHHHHHHHHHHHHHSC
T ss_pred CCccCCCCEEEEEeccCCCCccHHHHHHHHHHHHHHHcCC
Confidence 35788999999999984212222 1 2788899888754
No 117
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*
Probab=20.60 E-value=35 Score=29.58 Aligned_cols=30 Identities=13% Similarity=0.221 Sum_probs=22.2
Q ss_pred CCcEEEcCCCCCCCCCccc--hHHHHHHHHHHHH
Q psy895 235 IPHLLLCGSGAHPGGGVCG--APGYIAAQMVNRL 266 (269)
Q Consensus 235 i~nLyl~G~~~~pG~Gv~g--vsg~~~a~~il~~ 266 (269)
.+|||+++... |+|+.. .+|..+|+.|++.
T Consensus 331 ~~~l~~~~G~~--g~G~~~a~~~g~~la~~i~~~ 362 (382)
T 1ryi_A 331 DSRILFAAGHF--RNGILLAPATGALISDLIMNK 362 (382)
T ss_dssp EEEEEEEECCS--SCTTTTHHHHHHHHHHHHTTC
T ss_pred cCCEEEEEcCC--cchHHHhHHHHHHHHHHHhCC
Confidence 57999886643 678875 3899999888753
No 118
>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...
Probab=20.58 E-value=71 Score=30.59 Aligned_cols=38 Identities=16% Similarity=0.289 Sum_probs=27.4
Q ss_pred CCC-CCcEEEcCCCCCCCC-Ccc-c----hHHHHHHHHHHHHhcC
Q psy895 232 FTL-IPHLLLCGSGAHPGG-GVC-G----APGYIAAQMVNRLMRK 269 (269)
Q Consensus 232 ~t~-i~nLyl~G~~~~pG~-Gv~-g----vsg~~~a~~il~~~~~ 269 (269)
+.. ++|||.++.+++|.. +.. . +=|..+|+.|++++++
T Consensus 571 ~~~~~~~l~v~d~s~~p~~~~~np~~t~~a~a~r~a~~i~~~~~~ 615 (623)
T 3pl8_A 571 RVFGFKNLFLGGCGNIPTAYGANPTLTAMSLAIKSCEYIKQNFTP 615 (623)
T ss_dssp BBTTCSSEEECSGGGCCSCCCSCCHHHHHHHHHHHHHHHHHHCCC
T ss_pred CEecCCCeEEecCCccCCCCCcChHHHHHHHHHHHHHHHHHHhhc
Confidence 443 899999999999854 332 2 2577788888887653
No 119
>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=20.58 E-value=62 Score=29.24 Aligned_cols=34 Identities=9% Similarity=-0.025 Sum_probs=25.0
Q ss_pred CCCCCCcEEEcCCCCCCCCCccc--h-HHHHHHHHHHH
Q psy895 231 PFTLIPHLLLCGSGAHPGGGVCG--A-PGYIAAQMVNR 265 (269)
Q Consensus 231 ~~t~i~nLyl~G~~~~pG~Gv~g--v-sg~~~a~~il~ 265 (269)
.+|..+|+|.+||.+.. ..+.. + .|+.+|..|++
T Consensus 305 ~~t~~~~Iya~GD~~~~-~~~~~~A~~~g~~aa~~i~g 341 (470)
T 1dxl_A 305 FSTNVSGVYAIGDVIPG-PMLAHKAEEDGVACVEYLAG 341 (470)
T ss_dssp CBCSSTTEEECSTTSSS-CCCHHHHHHHHHHHHHHHTT
T ss_pred CccCCCCEEEEeccCCC-CccHHHHHHHHHHHHHHHcC
Confidence 56789999999999853 22221 2 78888888875
No 120
>3pc7_A DNA ligase 3; DNA repair, BRCT domain, protein:protein interactions, XRCC1 domain, DNA binding protein; HET: DNA MSE; 1.65A {Homo sapiens} SCOP: c.15.1.2 PDB: 3pc8_C* 1imo_A* 1in1_A* 3qvg_A*
Probab=20.52 E-value=39 Score=23.96 Aligned_cols=30 Identities=7% Similarity=-0.108 Sum_probs=20.5
Q ss_pred hhhHHHHHHhcCeeeeeeeeeeeceeeEEEecCC
Q psy895 6 FLKDKEIEKKGGKRLRKITLVIRTRSIYCYECDS 39 (269)
Q Consensus 6 ~~~~~~i~~~gg~~~~~~~~~~~~~~i~~~~~~~ 39 (269)
+.|.+-|-++||+|+.. ++..+++.+..+.
T Consensus 32 ~~l~RyiiAfgG~v~~~----~~~~~vTHvI~~~ 61 (88)
T 3pc7_A 32 SRLRRYFVAFDGDLVQE----FDMTSATHVLGSR 61 (88)
T ss_dssp HHHHHHHHHTTCEECCG----GGGGGCSEEESCC
T ss_pred hhheeeeeecCCEEecc----cCCCcCeEEecCC
Confidence 47889999999998772 3333556666544
No 121
>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*
Probab=20.33 E-value=40 Score=29.96 Aligned_cols=33 Identities=6% Similarity=-0.112 Sum_probs=24.7
Q ss_pred CCcEEEcCCCC-CCCCCccc-h-HHHHHHHHHHHHh
Q psy895 235 IPHLLLCGSGA-HPGGGVCG-A-PGYIAAQMVNRLM 267 (269)
Q Consensus 235 i~nLyl~G~~~-~pG~Gv~g-v-sg~~~a~~il~~~ 267 (269)
.+|+|+||.+. +-+.++.. + ||..+|+++++.+
T Consensus 335 ~~~~~~~Gr~~~~~~~~~~d~i~sa~~~a~~~~~~~ 370 (384)
T 2bi7_A 335 ETNITFVGRLGTYRYLDMDVTIAEALKTAEVYLNSL 370 (384)
T ss_dssp CSSEEECHHHHTTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEccccEEEEeCCHHHHHHHHHHHHHHHhhhh
Confidence 58999999864 34445554 3 9999999998754
No 122
>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}
Probab=20.22 E-value=57 Score=29.59 Aligned_cols=48 Identities=10% Similarity=-0.090 Sum_probs=34.7
Q ss_pred hhhhhHHHHHHhcCeeeeee---eeeeeceeeEEEecCCCccCccCCCCCCCC
Q psy895 4 LSFLKDKEIEKKGGKRLRKI---TLVIRTRSIYCYECDSWKDRRCLDPFNYSV 53 (269)
Q Consensus 4 ~~~~~~~~i~~~gg~~~~~~---~~~~~~~~i~~~~~~~~~~~~~~~~fi~~~ 53 (269)
++..|.+.+++.|.+++.+. +++.++.++. +..++++...|+. ++..+
T Consensus 204 ~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~-v~~~~g~~i~aD~-Vv~a~ 254 (472)
T 3iwa_A 204 LSQMLRHDLEKNDVVVHTGEKVVRLEGENGKVA-RVITDKRTLDADL-VILAA 254 (472)
T ss_dssp HHHHHHHHHHHTTCEEECSCCEEEEEESSSBEE-EEEESSCEEECSE-EEECS
T ss_pred HHHHHHHHHHhcCCEEEeCCEEEEEEccCCeEE-EEEeCCCEEEcCE-EEECC
Confidence 45678889999999999874 4444345555 6677888888888 66653
No 123
>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}
Probab=20.20 E-value=57 Score=30.01 Aligned_cols=36 Identities=17% Similarity=0.195 Sum_probs=25.9
Q ss_pred CCCCCCCcEEEcCCCCCCCCCccc-h-HHHHHHHHHHH
Q psy895 230 SPFTLIPHLLLCGSGAHPGGGVCG-A-PGYIAAQMVNR 265 (269)
Q Consensus 230 ~~~t~i~nLyl~G~~~~pG~Gv~g-v-sg~~~a~~il~ 265 (269)
..+|.++|+|.+||.+.+..-.+. + .|+.+|..|++
T Consensus 300 ~~~t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~~ 337 (492)
T 3ic9_A 300 TLQTSVDHIFVAGDANNTLTLLHEAADDGKVAGTNAGA 337 (492)
T ss_dssp TCBCSSTTEEECGGGGTSSCSHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCCEEEEEecCCCCccHHHHHHHHHHHHHHHcC
Confidence 457889999999999853221111 2 78999999886
No 124
>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}
Probab=20.10 E-value=50 Score=30.21 Aligned_cols=38 Identities=11% Similarity=-0.129 Sum_probs=0.0
Q ss_pred CCCCCcEEEcCCCCCCCCCccch--HHHHHHHHHHHHhcC
Q psy895 232 FTLIPHLLLCGSGAHPGGGVCGA--PGYIAAQMVNRLMRK 269 (269)
Q Consensus 232 ~t~i~nLyl~G~~~~pG~Gv~gv--sg~~~a~~il~~~~~ 269 (269)
+|.++|+|.+||.+....-.+.+ .|+.+|+.|++...+
T Consensus 315 ~t~~~~Iya~GD~~~~~~~~~~A~~~g~~aa~~i~~~~~~ 354 (484)
T 3o0h_A 315 TTNVSHIWAVGDVTGHIQLTPVAIHDAMCFVKNAFENTST 354 (484)
T ss_dssp BCSSTTEEECGGGGTSCCCHHHHHHHHHHHHHHHHC---C
T ss_pred CCCCCCEEEEEecCCCCcCHHHHHHHHHHHHHHHcCCCCC
Done!