RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy895
(269 letters)
>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure
initiative, northeast structural genomics consortium,
NESG; HET: FAD; 1.80A {Methanosarcina mazei}
Length = 425
Score = 64.7 bits (158), Expect = 3e-12
Identities = 24/160 (15%), Positives = 47/160 (29%), Gaps = 34/160 (21%)
Query: 110 HMCFCESDRPMIEMVLPSSLDNTLSPPGHHVCLLFTQFTPYKLAGDRDWTEEDKANYATN 169
+ R + + + D L+PPG H+ + P ++ +
Sbjct: 297 GVLLTPYTRRINGVNEVTQADPELAPPGKHLTMCHQYVAP--------ENVKNLESEIEM 348
Query: 170 VFSSIEQYCPGFTQDIVGYEILTPPDLEKEFGLTGGNIFHGALSLNQLLFNRPLPIQGPS 229
+++ PG YE+L + A P G
Sbjct: 349 GLEDLKEIFPGKR-----YEVLLIQSYH-----DEWPVNRAA------SGTDP----GNE 388
Query: 230 SPFTLIPHLLLCGSGAHPGGGVCGAPGYI--AAQMVNRLM 267
+P L + G GA GG+ G ++ +++
Sbjct: 389 TP---FSGLYVVGDGAKGKGGI-EVEGVALGVMSVMEKVL 424
>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural
genomics, PSI-2, protein STRU initiative; HET: AMP;
2.10A {Pyrococcus furiosus}
Length = 421
Score = 45.8 bits (109), Expect = 6e-06
Identities = 22/161 (13%), Positives = 44/161 (27%), Gaps = 41/161 (25%)
Query: 109 GHMCFCESDRPMIEMVLPSSLDNTLSPPGHHVCLLFTQFTPYKLAGDRDWTEEDKANYAT 168
G+ + PS+LD +L+ G+ + + + + E+
Sbjct: 283 GNTIVFTPGLMINGFNEPSALDKSLAREGYTLIMAHMALKNGNVKKAIEKGWEE------ 336
Query: 169 NVFSSIEQYCPGFTQDIVGYEILTPPDLEKEFGLTGGNIFHGALSLNQLLFNRPLPIQGP 228
+ + P E L + + NR
Sbjct: 337 -----LLEIFP-------EGEPLLAQV------------YRDGNPV-----NRTRAGLHI 367
Query: 229 SSPFTLIPHLLLCGSGAHPGGGVCGAPG--YIAAQMVNRLM 267
P + +L+ G G P GG+ G + + +L
Sbjct: 368 EWP---LNEVLVVGDGYRPPGGI-EVDGIALGVMKALEKLN 404
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.3 bits (99), Expect = 1e-04
Identities = 50/268 (18%), Positives = 89/268 (33%), Gaps = 90/268 (33%)
Query: 36 ECDSWKD----------------RRCLDPFNYSVLP--IHQPALNPCNGCCVKM--VRN- 74
E DSW+ RC + + + LP I + +L G M + N
Sbjct: 285 ETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNL 344
Query: 75 SKTEFES-VRRTCT-----SKLDISLF-----MVDHVC-----MY------------EGS 106
++ + + V +T + +++ISL +V V +Y G
Sbjct: 345 TQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLV--VSGPPQSLYGLNLTLRKAKAPSGL 402
Query: 107 GRGHMCFCESDR-PMIEMV-LPSSLDNTLSPPGHHVCLLFTQFTPYKLAGDRDWTEEDKA 164
+ + F S+R LP ++ P H + L D +D
Sbjct: 403 DQSRIPF--SERKLKFSNRFLP------VASPFH---------SHL-LVPASDLINKDLV 444
Query: 165 NYATNVFSSIEQYCPGF-TQDIVGYEILTPPDLEKEFGLTGGNIFHGALSLNQLLFNRPL 223
+ F++ + P + T D G DL G+I + + + L
Sbjct: 445 KNNVS-FNAKDIQIPVYDTFD--GS------DLRVL----SGSI---SERIVDCIIR--L 486
Query: 224 PIQGPSSPFTLIPHLLLCGSGAHPGGGV 251
P++ ++ H+L G G G GV
Sbjct: 487 PVKWETTTQFKATHILDFGPGGASGLGV 514
Score = 32.3 bits (73), Expect = 0.18
Identities = 33/155 (21%), Positives = 48/155 (30%), Gaps = 49/155 (31%)
Query: 116 SDRPMIEMVLPS-SLDNTLS-PPGHHVCL--LFTQFT-----PY-KLAGDRDWTEEDK-- 163
S RP+ L SL++ L P L QF P A D +E
Sbjct: 5 STRPL---TLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAAD----DEPTTP 57
Query: 164 ----ANYATNVFSSIEQYCPGFTQDIVGYEILTPPDLEKEFGLTGGNIFHG-ALSLNQ-- 216
+ V S +E G ++ LT + E + L G +I H A L Q
Sbjct: 58 AELVGKFLGYVSSLVEPSKVGQFDQVLN-LCLT--EFENCY-LEGNDI-HALAAKLLQEN 112
Query: 217 ------------------LLFNRPLPIQGPSSPFT 233
++ RP + S+ F
Sbjct: 113 DTTLVKTKELIKNYITARIMAKRPFDKKSNSALFR 147
>1pk1_B Sex COMB on midleg CG9495-PA; hetero SAM domain, polymers,
transcriptional repression, transcription repression;
1.80A {Drosophila melanogaster} SCOP: a.60.1.2 PDB:
1pk3_A
Length = 89
Score = 32.2 bits (73), Expect = 0.031
Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Query: 156 RDWTEEDKANYATNVFSSIEQYCPGFTQ-DIVGYEI--LTPPDLEKEFGLTGG 205
DWT E+ Y + +S+ + F + +I G + L + K GL G
Sbjct: 15 IDWTIEEVIQYIESNDNSLAVHGDLFRKHEIDGKALLRLNSERMMKYMGLKLG 67
>2ean_A Connector enhancer of kinase suppressor of RAS 2; cell-free protein
synthesis, protein regulation, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 83
Score = 30.5 bits (69), Expect = 0.10
Identities = 9/51 (17%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 156 RDWTEEDKANYATNVFSSIEQYCPGFTQ-DIVGYEI--LTPPDLEKEFGLT 203
W+ ++ + ++QY F + I G ++ +T +L ++ G++
Sbjct: 9 SKWSPSQVVDWMKGLDDCLQQYIKNFEREKISGDQLLRITHQEL-EDLGVS 58
>3bs7_A Protein aveugle; sterIle alpha motif (SAM) domain, cytoplasm,
membrane, sensory transduction, vision, signaling
protein; 1.90A {Drosophila melanogaster}
Length = 78
Score = 29.4 bits (66), Expect = 0.23
Identities = 14/51 (27%), Positives = 19/51 (37%), Gaps = 4/51 (7%)
Query: 156 RDWTEEDKANYATNVFSSIEQYCPGFTQ-DIVGYEI--LTPPDLEKEFGLT 203
WT D + QY F Q DI G + +T L + G+T
Sbjct: 4 YLWTVSDVLKWYRRHCGEYTQYEQLFAQHDITGRALLRITDSSL-QRMGVT 53
>3bs5_B Connector enhancer of kinase suppressor of RAS 2; sterIle alpha
motif, SAM domain, SAM domain dimer, SAM domain complex,
cytoplasm, membrane; 2.00A {Homo sapiens}
Length = 80
Score = 29.3 bits (66), Expect = 0.25
Identities = 9/51 (17%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 156 RDWTEEDKANYATNVFSSIEQYCPGFTQ-DIVGYEI--LTPPDLEKEFGLT 203
W+ ++ + ++QY F + I G ++ +T +L ++ G++
Sbjct: 5 SKWSPSQVVDWMKGLDDCLQQYIKNFEREKISGDQLLRITHQEL-EDLGVS 54
>3bs5_A Protein aveugle; sterIle alpha motif, SAM domain, SAM domain dimer,
SAM domain complex, cytoplasm, membrane; 2.00A
{Drosophila melanogaster}
Length = 106
Score = 29.6 bits (66), Expect = 0.43
Identities = 14/51 (27%), Positives = 19/51 (37%), Gaps = 4/51 (7%)
Query: 156 RDWTEEDKANYATNVFSSIEQYCPGFTQ-DIVGYEI--LTPPDLEKEFGLT 203
WT D + QY F Q DI G + +T L + G+T
Sbjct: 24 YLWTVSDVLKWYRRHCGEYTQYEQLFAQHDITGRALLRITDSSL-QRMGVT 73
>3dxt_A JMJC domain-containing histone demethylation PROT; JMJD2D, histone
demethylase, H3K9, jumonji domain-CONT protein 2D,
oxidoreductase; 1.80A {Homo sapiens} PDB: 3dxu_A*
2w2i_A*
Length = 354
Score = 29.6 bits (65), Expect = 1.0
Identities = 17/129 (13%), Positives = 35/129 (27%), Gaps = 3/129 (2%)
Query: 26 VIRTRSIYCYECDSWKDRRCLDPFNYSVLPIHQPALNPCNGCCVKMVRNSKTEFESVR-R 84
I IY + +N L Q L G ++ V F +
Sbjct: 129 RIYNSPIYGADISGSLFDENTKQWNLGHLGTIQDLLEKECGVVIEGVNTPYLYFGMWKTT 188
Query: 85 TCTSKLDISLFMVDHVCMYEGSGRGHMCFCESDRPMIEMVLPSSLDNTLSPPGHHVCLLF 144
D+ L+ ++++ + G + +E + + G +
Sbjct: 189 FAWHTEDMDLYSINYLHL--GEPKTWYVVPPEHGQRLERLARELFPGSSRGCGAFLRHKV 246
Query: 145 TQFTPYKLA 153
+P L
Sbjct: 247 ALISPTVLK 255
>3tad_C Liprin-beta-1; protein binding; 2.90A {Mus musculus}
Length = 265
Score = 27.5 bits (60), Expect = 4.8
Identities = 12/52 (23%), Positives = 19/52 (36%), Gaps = 9/52 (17%)
Query: 157 DWTEEDKANYATNVFSSI--EQYCPGFTQ-DIVGYEI--LTPPDLEKEFGLT 203
WT+E ++ + Y I G + + DLEKE G+
Sbjct: 17 KWTKEQVCSW----LAEQGLGSYLSSGKHWIISGQTLLQASQQDLEKELGIK 64
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding,
chromatin regulator, cytoplasm, hydrolase,
metal-binding, nucleus, phosphoprotein; 1.55A {Homo
sapiens} PDB: 3gv4_A 3phd_A
Length = 109
Score = 26.1 bits (57), Expect = 5.8
Identities = 5/22 (22%), Positives = 9/22 (40%)
Query: 27 IRTRSIYCYECDSWKDRRCLDP 48
S +CY C ++ + L
Sbjct: 70 YIDLSAWCYYCQAYVHHQALLD 91
>2ox0_A JMJC domain-containing histone demethylation PROT; double-stranded
beta helix, demethylase, oxygenase, SGC, STR genomics,
structural genomics consortium, oxidoreductase; HET: MLY
ALY OGA; 1.95A {Homo sapiens} PDB: 2oq7_A* 2os2_A*
2ot7_A* 2oq6_A* 2vd7_A* 2ybk_A* 2ybp_A* 2ybs_A* 3njy_A*
3pdq_A* 3u4s_A* 2p5b_A* 2q8c_A* 2q8d_A* 2q8e_A* 2gp5_A*
2gp3_A* 2wwj_A* 2pxj_A* 2xml_A*
Length = 381
Score = 26.9 bits (58), Expect = 7.5
Identities = 15/130 (11%), Positives = 39/130 (30%), Gaps = 3/130 (2%)
Query: 25 LVIRTRSIYCYECDSWKDRRCLDPFNYSVLPIHQPALNPCNGCCVKMVRNSKTEFESVR- 83
+ IY + + + +D +N L + +G ++ V F +
Sbjct: 146 NLTFNPPIYGADVNGTLYEKHVDEWNIGRLRTILDLVEKESGITIEGVNTPYLYFGMWKT 205
Query: 84 RTCTSKLDISLFMVDHVCMYEGSGRGHMCFCESDRPMIEMVLPSSLDNTLSPPGHHVCLL 143
D+ L+ +++ ++ G + +E + + +
Sbjct: 206 SFAWHTEDMDLYSINY--LHFGEPKSWYSVPPEHGKRLERLAKGFFPGSAQSCEAFLRHK 263
Query: 144 FTQFTPYKLA 153
T +P L
Sbjct: 264 MTLISPLMLK 273
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.141 0.452
Gapped
Lambda K H
0.267 0.0479 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,209,554
Number of extensions: 242734
Number of successful extensions: 634
Number of sequences better than 10.0: 1
Number of HSP's gapped: 632
Number of HSP's successfully gapped: 19
Length of query: 269
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 177
Effective length of database: 4,133,061
Effective search space: 731551797
Effective search space used: 731551797
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (26.0 bits)