RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy895
         (269 letters)



>d1pk3a1 a.60.1.2 (A:17-79) Polycomb protein Scm {Fruit fly
           (Drosophila melanogaster) [TaxId: 7227]}
          Length = 63

 Score = 30.7 bits (69), Expect = 0.026
 Identities = 11/51 (21%), Positives = 20/51 (39%), Gaps = 3/51 (5%)

Query: 158 WTEEDKANYATNVFSSIEQYCPGFTQDIVGYEIL---TPPDLEKEFGLTGG 205
           WT E+   Y  +  +S+  +   F +  +  + L       + K  GL  G
Sbjct: 1   WTIEEVIQYIESNDNSLAVHGDLFRKHEIDGKALLRLNSEMMMKYMGLKLG 51


>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone
           demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 449

 Score = 29.5 bits (64), Expect = 0.47
 Identities = 13/66 (19%), Positives = 18/66 (27%), Gaps = 5/66 (7%)

Query: 208 FHGALSLNQLLFNRPL-PIQGPSSPFTLIPHLLLCGSGAHPG--GGVCGA--PGYIAAQM 262
             G+   +  L  +P+ P          IP L   G          V GA   G   A  
Sbjct: 383 AAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREAGR 442

Query: 263 VNRLMR 268
           +     
Sbjct: 443 IADQFL 448


>d2ejna1 a.101.1.1 (A:1-72) Allergen Fel d I-A chain {Cat (Felis
           catus) [TaxId: 9685]}
          Length = 72

 Score = 25.9 bits (57), Expect = 1.3
 Identities = 10/26 (38%), Positives = 12/26 (46%), Gaps = 3/26 (11%)

Query: 155 DRDWTEEDKANYATNVFSSIE--QYC 178
           D   TEEDK N A ++   I     C
Sbjct: 46  DAKMTEEDKEN-ALSLLDKIYTSPLC 70


>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus)
          [TaxId: 10090]}
          Length = 88

 Score = 26.3 bits (57), Expect = 1.6
 Identities = 9/45 (20%), Positives = 16/45 (35%)

Query: 32 IYCYECDSWKDRRCLDPFNYSVLPIHQPALNPCNGCCVKMVRNSK 76
          + C EC +   + C  P            +  C  C  +M R ++
Sbjct: 34 VECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKRMAQ 78


>d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase,
          regulatory (C-terminal) domain {Escherichia coli
          [TaxId: 562]}
          Length = 84

 Score = 24.7 bits (54), Expect = 4.7
 Identities = 7/25 (28%), Positives = 15/25 (60%)

Query: 9  DKEIEKKGGKRLRKITLVIRTRSIY 33
          D+++ +K  + ++ I   IR R +Y
Sbjct: 60 DEDVAEKALQAMKAIPGTIRARLLY 84


>d1i7qa_ d.161.1.1 (A:) Anthranilate synthase
           aminodeoxyisochorismate synthase/lyase subunit, TrpE
           {Serratia marcescens [TaxId: 615]}
          Length = 517

 Score = 26.1 bits (56), Expect = 5.3
 Identities = 7/22 (31%), Positives = 10/22 (45%)

Query: 245 AHPGGGVCGAPGYIAAQMVNRL 266
               G + GAP   A Q++  L
Sbjct: 417 CMNMGTLSGAPKVRAMQLIAAL 438


>d1ffya2 b.51.1.1 (A:201-394) Isoleucyl-tRNA synthetase (IleRS)
           {Staphylococcus aureus [TaxId: 1280]}
          Length = 194

 Score = 25.0 bits (53), Expect = 9.5
 Identities = 7/26 (26%), Positives = 9/26 (34%)

Query: 98  DHVCMYEGSGRGHMCFCESDRPMIEM 123
           DHV    G+G  H      +   I  
Sbjct: 113 DHVTTDAGTGCVHTAPGHGEDDYIVG 138


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.141    0.452 

Gapped
Lambda     K      H
   0.267   0.0571    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,065,536
Number of extensions: 50054
Number of successful extensions: 181
Number of sequences better than 10.0: 1
Number of HSP's gapped: 181
Number of HSP's successfully gapped: 11
Length of query: 269
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 185
Effective length of database: 1,254,276
Effective search space: 232041060
Effective search space used: 232041060
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.2 bits)