BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8953
(286 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 28/37 (75%)
Query: 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
KEIL GIS E + G++ ++GP+GAGK+T L I++ L
Sbjct: 28 KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTL 64
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 27/32 (84%)
Query: 248 ISGEFKAGQLTAIMGPSGAGKSTLLNILAGLT 279
+SGE +AG++ ++GP+GAGKSTLL +AG+T
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLARMAGMT 50
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 27/32 (84%)
Query: 248 ISGEFKAGQLTAIMGPSGAGKSTLLNILAGLT 279
+SGE +AG++ ++GP+GAGKSTLL +AG+T
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLARMAGMT 50
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 27/35 (77%)
Query: 244 ILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
+L ++ EF+ G++ ++G +G+GK+TLL ILAGL
Sbjct: 26 VLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGL 60
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 40.8 bits (94), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 27/34 (79%)
Query: 245 LHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
+ G+S + + G++ ++GPSG+GK+T+L ++AGL
Sbjct: 31 VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGL 64
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%)
Query: 241 NKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAG 277
+K IL G+S + G++ AIMGP+G+GKSTL LAG
Sbjct: 13 DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAG 49
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%)
Query: 241 NKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAG 277
+K IL G+S + G++ AIMGP+G+GKSTL LAG
Sbjct: 32 DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAG 68
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 30/46 (65%)
Query: 241 NKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLNFSKC 286
+ +++ +S +G++ AI+GP+GAGKSTLL +L G + +C
Sbjct: 23 QQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGEC 68
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 25/34 (73%)
Query: 245 LHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
+ G+S E K G+ A++GPSG GK+T L +LAG+
Sbjct: 19 VDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGI 52
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 23/32 (71%)
Query: 245 LHGISGEFKAGQLTAIMGPSGAGKSTLLNILA 276
L ++ K G+ +IMGPSG+GKST+LNI+
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIG 52
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 23/32 (71%)
Query: 245 LHGISGEFKAGQLTAIMGPSGAGKSTLLNILA 276
L ++ K G+ +IMGPSG+GKST+LNI+
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIG 52
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 25/32 (78%)
Query: 248 ISGEFKAGQLTAIMGPSGAGKSTLLNILAGLT 279
+SGE +AG++ ++GP+GAGKSTLL AG T
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLARXAGXT 50
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 25/32 (78%)
Query: 248 ISGEFKAGQLTAIMGPSGAGKSTLLNILAGLT 279
+SGE +AG++ ++GP+GAGKSTLL AG T
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLARXAGXT 50
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/34 (58%), Positives = 24/34 (70%)
Query: 243 EILHGISGEFKAGQLTAIMGPSGAGKSTLLNILA 276
EIL GIS K G+ +I+G SG+GKSTLL IL
Sbjct: 18 EILKGISLSVKKGEFVSIIGASGSGKSTLLYILG 51
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 24/34 (70%)
Query: 245 LHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
L G+S G +T I+GP+G+GKSTL+N++ G
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGF 56
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 28/40 (70%)
Query: 239 FLNKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
F N L+ I+ + K G+ A++GPSG+GKSTLL +AG+
Sbjct: 13 FGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGI 52
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 24/34 (70%)
Query: 245 LHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
L G+S G +T I+GP+G+GKSTL+N++ G
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGF 56
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Query: 232 AYHNPADFLNKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
AY N D L +L G++ + G++TA++GP+G+GKST+ +L L
Sbjct: 23 AYPNRPDVL---VLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNL 66
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 25/34 (73%)
Query: 244 ILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAG 277
IL G++ G++ A+MGP+GAGKSTL ILAG
Sbjct: 18 ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAG 51
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 10/39 (25%)
Query: 250 GEFKA----------GQLTAIMGPSGAGKSTLLNILAGL 278
GEFKA G +T I+GP+G+GKSTL+N++ G
Sbjct: 18 GEFKALDGVSISVCKGDVTLIIGPNGSGKSTLINVITGF 56
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 243 EILHGISGEFKAGQLTAIMGPSGAGKSTLLNIL 275
E+L GI+ + G++ ++GPSG+GKST L L
Sbjct: 17 EVLKGINVHIREGEVVVVIGPSGSGKSTFLRCL 49
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 9/64 (14%)
Query: 224 ASLGLPCPAYHNPADFLNKE---------ILHGISGEFKAGQLTAIMGPSGAGKSTLLNI 274
A L P F N E +L G++ K G L A++G +G+GKSTL+N+
Sbjct: 329 ADNALALPNVEGSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNL 388
Query: 275 LAGL 278
+ L
Sbjct: 389 IPRL 392
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNIL 275
K +L I+ K GQ A++GP+G+GK+T++N+L
Sbjct: 368 KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLL 401
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 22/29 (75%)
Query: 250 GEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
GE + G++ I+GP+G GK+T + +LAG+
Sbjct: 377 GEIRKGEVIGIVGPNGIGKTTFVKMLAGV 405
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 253 KAGQLTAIMGPSGAGKSTLLNILAG 277
K G + I+GP+G GK+T + ILAG
Sbjct: 115 KDGMVVGIVGPNGTGKTTAVKILAG 139
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 22/29 (75%)
Query: 250 GEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
GE + G++ I+GP+G GK+T + +LAG+
Sbjct: 363 GEIRKGEVIGIVGPNGIGKTTFVKMLAGV 391
Score = 32.3 bits (72), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 253 KAGQLTAIMGPSGAGKSTLLNILAG 277
K G + I+GP+G GK+T + ILAG
Sbjct: 101 KDGMVVGIVGPNGTGKTTAVKILAG 125
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 243 EILHGISGEFKAGQLTAIMGPSGAGKSTLLNIL 275
E+L GI+ + G++ ++GPSG+GKST L L
Sbjct: 38 EVLKGINVHIREGEVVVVIGPSGSGKSTFLRCL 70
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 36.2 bits (82), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 250 GEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
GE K G++ I+GP+G GK+T + LAG+
Sbjct: 307 GEIKKGEVIGIVGPNGIGKTTFVKXLAGV 335
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 253 KAGQLTAIMGPSGAGKSTLLNILAG 277
K G + I+GP+G GKST + ILAG
Sbjct: 45 KEGXVVGIVGPNGTGKSTAVKILAG 69
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 35.8 bits (81), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 23/34 (67%)
Query: 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNIL 275
+E L +S GQ A++GPSGAGKST+L +L
Sbjct: 67 RETLQDVSFTVMPGQTLALVGPSGAGKSTILRLL 100
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 35.8 bits (81), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 245 LHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
L ++ + G+ I+GPSGAGK+T + I+AGL
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAGL 54
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 35.8 bits (81), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 245 LHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
L ++ + G+ I+GPSGAGK+T + I+AGL
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAGL 54
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 35.8 bits (81), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 24/33 (72%)
Query: 243 EILHGISGEFKAGQLTAIMGPSGAGKSTLLNIL 275
EIL G+S + GQ A++GPSG GKST++ +L
Sbjct: 1093 EILKGLSFSVEPGQTLALVGPSGCGKSTVVALL 1125
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 23/32 (71%)
Query: 244 ILHGISGEFKAGQLTAIMGPSGAGKSTLLNIL 275
IL G++ AGQ A++G SG GKST++++L
Sbjct: 433 ILRGMNLRVNAGQTVALVGSSGCGKSTIISLL 464
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 245 LHGISGEFKAGQLTAIMGPSGAGKSTLLNILA 276
L ++ K G+ +I GPSG+GKST LNI+
Sbjct: 21 LKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIG 52
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 35.4 bits (80), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 249 SGEFKAGQLTAIMGPSGAGKSTLLNILAG 277
+GE K G++ I+GP+G GK+T IL G
Sbjct: 288 NGEAKEGEIIGILGPNGIGKTTFARILVG 316
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 253 KAGQLTAIMGPSGAGKSTLLNILAGLTYLNF 283
K + ++G +G GK+T+L ILAG NF
Sbjct: 23 KNNTILGVLGKNGVGKTTVLKILAGEIIPNF 53
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 35.0 bits (79), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 27/38 (71%)
Query: 241 NKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
N ++L G++ G++TA++GP+G+GKST+ +L L
Sbjct: 31 NVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNL 68
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 35.0 bits (79), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 27/38 (71%)
Query: 241 NKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
N ++L G++ G++TA++GP+G+GKST+ +L L
Sbjct: 31 NVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNL 68
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 35.0 bits (79), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 27/38 (71%)
Query: 241 NKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
N ++L G++ G++TA++GP+G+GKST+ +L L
Sbjct: 31 NVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNL 68
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 35.0 bits (79), Expect = 0.049, Method: Composition-based stats.
Identities = 19/35 (54%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 245 LHGISGEFKAGQLTAIMGPSGAGKSTLLN-ILAGL 278
L GI F G LT++ G SG+GKSTL+N ILA +
Sbjct: 658 LRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAV 692
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 35.0 bits (79), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 244 ILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAG 277
+L+ GEF ++ +MG +G GK+TL+ +LAG
Sbjct: 367 VLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAG 400
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 253 KAGQLTAIMGPSGAGKSTLLNILAGLTYLNFSK 285
+ GQ+ ++G +G GKST L ILAG N +
Sbjct: 101 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGR 133
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 35.0 bits (79), Expect = 0.053, Method: Composition-based stats.
Identities = 13/19 (68%), Positives = 18/19 (94%)
Query: 259 AIMGPSGAGKSTLLNILAG 277
A++GP+GAGKSTL+N+L G
Sbjct: 697 AVIGPNGAGKSTLINVLTG 715
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 35.0 bits (79), Expect = 0.053, Method: Composition-based stats.
Identities = 13/19 (68%), Positives = 18/19 (94%)
Query: 259 AIMGPSGAGKSTLLNILAG 277
A++GP+GAGKSTL+N+L G
Sbjct: 703 AVIGPNGAGKSTLINVLTG 721
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 34.7 bits (78), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 18/99 (18%)
Query: 183 TVVATIHTPSALLFEKFDSLYALAKGHCIYR----GSISRLVPHLASLGLPCPAYHNPAD 238
T + +A E F L+ AK + R G S + + LG P
Sbjct: 2 TTEVVMENVTAFWEEGFGELFEKAKQNNNNRKTSNGDDSLFFSNFSLLGTP--------- 52
Query: 239 FLNKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAG 277
+L I+ + + GQL A+ G +GAGK++LL ++ G
Sbjct: 53 -----VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMG 86
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 34.7 bits (78), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 13/19 (68%), Positives = 18/19 (94%)
Query: 259 AIMGPSGAGKSTLLNILAG 277
A++GP+GAGKSTL+N+L G
Sbjct: 703 AVIGPNGAGKSTLINVLTG 721
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 34.7 bits (78), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 23/32 (71%)
Query: 244 ILHGISGEFKAGQLTAIMGPSGAGKSTLLNIL 275
+L G+S E K GQ A++G SG GKST++ +L
Sbjct: 1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLL 1079
Score = 32.0 bits (71), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 25/36 (69%)
Query: 243 EILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
+IL G++ + K+GQ A++G SG GKST + ++ L
Sbjct: 404 QILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRL 439
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 34.7 bits (78), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 23/32 (71%)
Query: 244 ILHGISGEFKAGQLTAIMGPSGAGKSTLLNIL 275
+L G+S E K GQ A++G SG GKST++ +L
Sbjct: 1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLL 1079
Score = 32.0 bits (71), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 25/36 (69%)
Query: 243 EILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
+IL G++ + K+GQ A++G SG GKST + ++ L
Sbjct: 404 QILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRL 439
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 34.7 bits (78), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 248 ISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
+S E K G+ ++GPSG GK+T L ++AGL
Sbjct: 22 MSLEVKDGEFMILLGPSGCGKTTTLRMIAGL 52
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 34.7 bits (78), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 245 LHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
L GI+ K G++TAI+G +G GKSTL G+
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGI 57
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 34.3 bits (77), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 245 LHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
+ +S E K G+ ++GPSG GK+T L +AGL
Sbjct: 22 VKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGL 55
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 34.3 bits (77), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 248 ISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYL 281
I+ + G+ +GPSG GKSTLL ++AGL +
Sbjct: 22 INLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETI 55
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 34.3 bits (77), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 248 ISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYL 281
I+ + G+ +GPSG GKSTLL ++AGL +
Sbjct: 22 INLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETI 55
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 34.3 bits (77), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 248 ISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYL 281
I+ + G+ +GPSG GKSTLL ++AGL +
Sbjct: 22 INLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETI 55
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 34.3 bits (77), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 25/45 (55%)
Query: 234 HNPADFLNKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
H F N +L+ IS G++ I+G SG GK+TLL LAG
Sbjct: 9 HLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGF 53
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 18/99 (18%)
Query: 183 TVVATIHTPSALLFEKFDSLYALAKGHCIYR----GSISRLVPHLASLGLPCPAYHNPAD 238
T + +A E F L+ AK + R G S + + LG P
Sbjct: 2 TTEVVMENVTAFWEEGFGELFEKAKQNNNNRKTSNGDDSLSFSNFSLLGTP--------- 52
Query: 239 FLNKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAG 277
+L I+ + + GQL A+ G +GAGK++LL ++ G
Sbjct: 53 -----VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMG 86
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 18/99 (18%)
Query: 183 TVVATIHTPSALLFEKFDSLYALAKGHCIYR----GSISRLVPHLASLGLPCPAYHNPAD 238
T + +A E F L+ AK + R G S + + LG P
Sbjct: 2 TTEVVMENVTAFWEEGFGELFEKAKQNNNNRKTSNGDDSLSFSNFSLLGTP--------- 52
Query: 239 FLNKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAG 277
+L I+ + + GQL A+ G +GAGK++LL ++ G
Sbjct: 53 -----VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMG 86
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 23/32 (71%)
Query: 244 ILHGISGEFKAGQLTAIMGPSGAGKSTLLNIL 275
I S +G +TA++GPSG+GKST+L++L
Sbjct: 390 IFQDFSLSIPSGSVTALVGPSGSGKSTVLSLL 421
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 23/32 (71%)
Query: 244 ILHGISGEFKAGQLTAIMGPSGAGKSTLLNIL 275
I S +G +TA++GPSG+GKST+L++L
Sbjct: 359 IFQDFSLSIPSGSVTALVGPSGSGKSTVLSLL 390
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 24/39 (61%)
Query: 240 LNKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
L K+ L +S G+ + G +G+GKSTLL I+AGL
Sbjct: 18 LEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGL 56
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 24/39 (61%)
Query: 240 LNKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
L K+ L +S G+ + G +G+GKSTLL I+AGL
Sbjct: 20 LEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGL 58
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 252 FKAGQLTAIMGPSGAGKSTLLNILAGL 278
K G+ ++GPSG GK+T L ++AGL
Sbjct: 34 IKDGEFLVLLGPSGCGKTTTLRMIAGL 60
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 252 FKAGQLTAIMGPSGAGKSTLLNILAGL 278
K G+ ++GPSG GK+T L ++AGL
Sbjct: 35 IKDGEFLVLLGPSGCGKTTTLRMIAGL 61
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 29/46 (63%), Gaps = 4/46 (8%)
Query: 233 YHNPADFLNKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
Y+ +FL +++ + + G + A++G +G GKSTLL++L G+
Sbjct: 13 YYQAENFLFQQL----NFDLNKGDILAVLGQNGCGKSTLLDLLLGI 54
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 241 NKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNIL 275
+++IL IS E + + A GPSG GKST+ ++L
Sbjct: 14 SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLL 48
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 23/34 (67%)
Query: 245 LHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
L +S + ++G+ I+GP+GAGK+ L ++AG
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGF 49
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 32.0 bits (71), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 24/34 (70%)
Query: 244 ILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAG 277
+L I+ + + GQL A+ G +GAGK++LL ++ G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMG 86
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 32.0 bits (71), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 24/34 (70%)
Query: 244 ILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAG 277
+L I+ + + GQL A+ G +GAGK++LL ++ G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMG 86
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 24/34 (70%)
Query: 244 ILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAG 277
+L I+ + + GQL A+ G +GAGK++LL ++ G
Sbjct: 35 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMG 68
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 31.6 bits (70), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 24/34 (70%)
Query: 244 ILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAG 277
+L I+ + + GQL A+ G +GAGK++LL ++ G
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMG 56
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 31.6 bits (70), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 24/34 (70%)
Query: 244 ILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAG 277
+L I+ + + GQL A+ G +GAGK++LL ++ G
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMG 56
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 31.2 bits (69), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 245 LHGISGEFKAGQLTAIMGPSGAGKSTLL 272
L+ +S AGQ+ ++G SGAGKSTL+
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLI 71
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 31.2 bits (69), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 245 LHGISGEFKAGQLTAIMGPSGAGKSTLL 272
L+ +S AGQ+ ++G SGAGKSTL+
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLI 71
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 31.2 bits (69), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 245 LHGISGEFKAGQLTAIMGPSGAGKSTLL 272
L+ +S AGQ+ ++G SGAGKSTL+
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLI 48
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 31.2 bits (69), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 21/34 (61%)
Query: 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNIL 275
K IL IS + G + G +GAGK+TLLNIL
Sbjct: 34 KTILKKISWQIAKGDKWILYGLNGAGKTTLLNIL 67
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 30.8 bits (68), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 245 LHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLT 279
+ GI + GQ+ ++G +GAGK+T L+ +AGL
Sbjct: 22 IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLV 56
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 30.8 bits (68), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 244 ILHGISGEFKAGQLTAIMGPSGAGKSTLLNIL 275
IL I+ + G+ A +G SG GKSTL+N++
Sbjct: 356 ILKDINLSIEKGETVAFVGMSGGGKSTLINLI 387
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 19/24 (79%)
Query: 255 GQLTAIMGPSGAGKSTLLNILAGL 278
G+ I+GP+G+GK+TLL ++GL
Sbjct: 30 GEKVIILGPNGSGKTTLLRAISGL 53
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 244 ILHGISGEFKAGQLTAIMGPSGAGKSTLLNIL 275
IL I+ K G++ I+G SG+GKSTL ++
Sbjct: 18 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI 49
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 244 ILHGISGEFKAGQLTAIMGPSGAGKSTLLNIL 275
IL I+ K G++ I+G SG+GKSTL ++
Sbjct: 24 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI 55
>pdb|1II8|A Chain A, Crystal Structure Of The P. Furiosus Rad50 Atpase Domain
Length = 195
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 23/31 (74%), Gaps = 2/31 (6%)
Query: 251 EFKAGQLTAIMGPSGAGKSTLLN-ILAGLTY 280
EFK G + I+G +G+GKS+LL+ IL GL +
Sbjct: 20 EFKEG-INLIIGQNGSGKSSLLDAILVGLYW 49
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 244 ILHGISGEFKAGQLTAIMGPSGAGKSTLLNIL 275
IL I+ K G++ I+G SG+GKSTL ++
Sbjct: 18 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI 49
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 244 ILHGISGEFKAGQLTAIMGPSGAGKSTLLNIL 275
IL I+ K G++ I+G SG+GKSTL ++
Sbjct: 20 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI 51
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 244 ILHGISGEFKAGQLTAIMGPSGAGKSTLLNIL 275
IL I+ K G++ I+G SG+GKSTL ++
Sbjct: 24 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI 55
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 244 ILHGISGEFKAGQLTAIMGPSGAGKSTLLNIL 275
IL I+ K G++ I+G SG+GKSTL ++
Sbjct: 24 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI 55
>pdb|3QG5|A Chain A, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
pdb|3QG5|B Chain B, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
Length = 365
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 7/44 (15%)
Query: 245 LHGISGEFKAGQLTAIMGPSGAGKSTLLNILA------GLTYLN 282
L + EF++G +T + GP+GAGKS+L ++ G+ Y N
Sbjct: 14 LKNVDIEFQSG-ITVVEGPNGAGKSSLFEAISFALFGNGIRYPN 56
>pdb|3QF7|A Chain A, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
pdb|3QF7|B Chain B, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
Length = 365
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 7/44 (15%)
Query: 245 LHGISGEFKAGQLTAIMGPSGAGKSTLLNILA------GLTYLN 282
L + EF++G +T + GP+GAGKS+L ++ G+ Y N
Sbjct: 14 LKNVDIEFQSG-ITVVEGPNGAGKSSLFEAISFALFGNGIRYPN 56
>pdb|3QKR|A Chain A, Mre11 Rad50 Binding Domain Bound To Rad50
pdb|3QKS|A Chain A, Mre11 Rad50 Binding Domain Bound To Rad50
Length = 203
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 23/31 (74%), Gaps = 2/31 (6%)
Query: 251 EFKAGQLTAIMGPSGAGKSTLLN-ILAGLTY 280
EFK G + I+G +G+GKS+LL+ IL GL +
Sbjct: 20 EFKEG-INLIIGQNGSGKSSLLDAILVGLYW 49
>pdb|3THO|A Chain A, Crystal Structure Of Mre11:rad50 In Its AtpADP BOUND STATE
Length = 382
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 245 LHGISGEFKAGQLTAIMGPSGAGKSTLLNILA 276
L + EF++G +T + GP+GAGKS+L ++
Sbjct: 31 LKNVDIEFQSG-ITVVEGPNGAGKSSLFEAIS 61
>pdb|3QKU|A Chain A, Mre11 Rad50 Binding Domain In Complex With Rad50 And
Amp-Pnp
pdb|3QKU|B Chain B, Mre11 Rad50 Binding Domain In Complex With Rad50 And
Amp-Pnp
Length = 359
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 23/31 (74%), Gaps = 2/31 (6%)
Query: 251 EFKAGQLTAIMGPSGAGKSTLLN-ILAGLTY 280
EFK G + I+G +G+GKS+LL+ IL GL +
Sbjct: 20 EFKEG-INLIIGQNGSGKSSLLDAILVGLYW 49
>pdb|3QKT|A Chain A, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|B Chain B, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|C Chain C, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|D Chain D, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
Length = 339
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 23/31 (74%), Gaps = 2/31 (6%)
Query: 251 EFKAGQLTAIMGPSGAGKSTLLN-ILAGLTY 280
EFK G + I+G +G+GKS+LL+ IL GL +
Sbjct: 20 EFKEG-INLIIGQNGSGKSSLLDAILVGLYW 49
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 244 ILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282
IL IS GQ ++G +G+GKSTLL+ A L LN
Sbjct: 36 ILENISFSISPGQRVGLLGRTGSGKSTLLS--AFLRLLN 72
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 241 NKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYL 281
+K +L I+ + G + GP+G GK+TLL ++ TYL
Sbjct: 21 DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTIS--TYL 59
>pdb|1F2T|A Chain A, Crystal Structure Of Atp-free Rad50 Abc-atpase
pdb|1F2U|A Chain A, Crystal Structure Of Rad50 Abc-Atpase
pdb|1F2U|C Chain C, Crystal Structure Of Rad50 Abc-Atpase
Length = 149
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 23/31 (74%), Gaps = 2/31 (6%)
Query: 251 EFKAGQLTAIMGPSGAGKSTLLN-ILAGLTY 280
EFK G + I+G +G+GKS+LL+ IL GL +
Sbjct: 20 EFKEG-INLIIGQNGSGKSSLLDAILVGLYW 49
>pdb|1HF2|A Chain A, Crystal Structure Of The Bacterial Cell-Division Inhibitor
Minc From T. Maritima
pdb|1HF2|B Chain B, Crystal Structure Of The Bacterial Cell-Division Inhibitor
Minc From T. Maritima
pdb|1HF2|C Chain C, Crystal Structure Of The Bacterial Cell-Division Inhibitor
Minc From T. Maritima
pdb|1HF2|D Chain D, Crystal Structure Of The Bacterial Cell-Division Inhibitor
Minc From T. Maritima
Length = 210
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 173 DFPNLAKQGRTVVATIHTPSALLFEKFDSLYALAKGHCIYRGSISRLVPHLASLGLPC 230
D+ NL + + A I T F K D + + + H + I R+V HL +LGL
Sbjct: 17 DYQNLEEVLNAISARI-TQMGGFFAKGDRISLMIENHNKHSQDIPRIVSHLRNLGLEV 73
>pdb|1US8|A Chain A, The Rad50 Signature Motif: Essential To Atp Binding And
Biological Function
Length = 147
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 23/31 (74%), Gaps = 2/31 (6%)
Query: 251 EFKAGQLTAIMGPSGAGKSTLLN-ILAGLTY 280
EFK G + I+G +G+GKS+LL+ IL GL +
Sbjct: 20 EFKEG-INLIIGQNGSGKSSLLDAILVGLYW 49
>pdb|1Q3T|A Chain A, Solution Structure And Function Of An Essential Cmp Kinase
Of Streptococcus Pneumoniae
Length = 236
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 3/27 (11%)
Query: 259 AIMGPSGAGKSTLLNILA---GLTYLN 282
AI GP+ +GKST+ I+A G TYL+
Sbjct: 20 AIDGPASSGKSTVAKIIAKDFGFTYLD 46
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 251 EFKAGQ-LTAIMGPSGAGKSTLLNILAGLT 279
+F+ G+ ++GP+GAGKS L ++AG+
Sbjct: 19 DFEMGRDYCVLLGPTGAGKSVFLELIAGIV 48
>pdb|2YKR|W Chain W, 30s Ribosomal Subunit With Rsga Bound In The Presence Of
Gmppnp
Length = 350
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 254 AGQLTAIMGPSGAGKSTLLNILAGL 278
G+++ G SG GKS+LLN L GL
Sbjct: 206 TGRISIFAGQSGVGKSSLLNALLGL 230
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 244 ILHGISGEFKAGQLTAIMGPSGAGKSTLLNIL 275
IL I+ K G++ I+G +G+GKSTL ++
Sbjct: 20 ILDNINLSIKQGEVIGIVGRAGSGKSTLTKLI 51
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 28.9 bits (63), Expect = 3.4, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 245 LHGISGEFKAGQLTAIMGPSGAGKSTLLN 273
L +S + G A+ G SG+GKSTL+N
Sbjct: 640 LKNVSVKIPLGTFVAVTGVSGSGKSTLVN 668
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 28.9 bits (63), Expect = 3.4, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 245 LHGISGEFKAGQLTAIMGPSGAGKSTLLN 273
L +S + G A+ G SG+GKSTL+N
Sbjct: 640 LKNVSVKIPLGTFVAVTGVSGSGKSTLVN 668
>pdb|2RCN|A Chain A, Crystal Structure Of The Ribosomal Interacting Gtpase Yjeq
From The Enterobacterial Species Salmonella Typhimurium
Length = 358
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 255 GQLTAIMGPSGAGKSTLLNILAGL 278
G+++ G SG GKS+LLN L GL
Sbjct: 215 GRISIFAGQSGVGKSSLLNALLGL 238
>pdb|4A2I|V Chain V, Cryo-Electron Microscopy Structure Of The 30s Subunit In
Complex With The Yjeq Biogenesis Factor
Length = 277
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 251 EFKAGQLTAIMGPSGAGKSTLLNILAGL 278
E G+++ G SG GKS+LLN L GL
Sbjct: 156 EALTGRISIFAGQSGVGKSSLLNALLGL 183
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 7/53 (13%)
Query: 228 LPCPAYHNPADFLNKEI-------LHGISGEFKAGQLTAIMGPSGAGKSTLLN 273
+P PA D E+ L +S + G A+ G SG+GKSTL+N
Sbjct: 314 IPIPAERRRPDGRWLEVVGAREHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVN 366
>pdb|2JLP|A Chain A, Crystal Structure Of Human Extracellular Copper-Zinc
Superoxide Dismutase.
pdb|2JLP|B Chain B, Crystal Structure Of Human Extracellular Copper-Zinc
Superoxide Dismutase.
pdb|2JLP|C Chain C, Crystal Structure Of Human Extracellular Copper-Zinc
Superoxide Dismutase.
pdb|2JLP|D Chain D, Crystal Structure Of Human Extracellular Copper-Zinc
Superoxide Dismutase
Length = 222
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 221 PHLASLGLPCPAYHNPADFLNKEILHGISGEFKAGQLTAIMGP 263
PH L +P P + P DF N + G ++AG ++ GP
Sbjct: 112 PHYNPLAVPHPQH--PGDFGNFAVRDGSLWRYRAGLAASLAGP 152
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 245 LHGISGEFKAGQLTAIMGPSGAGKSTLLNIL 275
L+GI+ G L A++G G GKS+LL+ L
Sbjct: 21 LNGITFSIPEGALVAVVGQVGCGKSSLLSAL 51
>pdb|3JVV|A Chain A, Crystal Structure Of P. Aeruginosa Pilt With Bound Amp-Pcp
pdb|3JVV|B Chain B, Crystal Structure Of P. Aeruginosa Pilt With Bound Amp-Pcp
pdb|3JVV|C Chain C, Crystal Structure Of P. Aeruginosa Pilt With Bound Amp-Pcp
pdb|3JVU|A Chain A, Crystal Structure Of Unliganded P. Aeruginosa Pilt
pdb|3JVU|B Chain B, Crystal Structure Of Unliganded P. Aeruginosa Pilt
pdb|3JVU|C Chain C, Crystal Structure Of Unliganded P. Aeruginosa Pilt
Length = 356
Score = 27.7 bits (60), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 257 LTAIMGPSGAGKSTLLNILAGLTYLNFSK 285
L + GP+G+GKST L A L YLN +K
Sbjct: 125 LVLVTGPTGSGKSTTLA--AMLDYLNNTK 151
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,873,335
Number of Sequences: 62578
Number of extensions: 303669
Number of successful extensions: 1012
Number of sequences better than 100.0: 119
Number of HSP's better than 100.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 883
Number of HSP's gapped (non-prelim): 149
length of query: 286
length of database: 14,973,337
effective HSP length: 98
effective length of query: 188
effective length of database: 8,840,693
effective search space: 1662050284
effective search space used: 1662050284
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)