Query psy8953
Match_columns 286
No_of_seqs 202 out of 2585
Neff 9.3
Searched_HMMs 46136
Date Fri Aug 16 23:49:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8953.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8953hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0061|consensus 100.0 1.1E-39 2.3E-44 308.1 15.2 177 1-180 69-284 (613)
2 PRK13549 xylose transporter AT 100.0 8.7E-36 1.9E-40 278.7 16.5 234 1-281 44-314 (506)
3 KOG0065|consensus 100.0 1.6E-35 3.5E-40 287.0 14.4 177 1-180 830-1050(1391)
4 PRK10762 D-ribose transporter 100.0 3.3E-35 7.1E-40 274.5 16.0 226 1-282 43-305 (501)
5 PRK09700 D-allose transporter 100.0 6E-35 1.3E-39 273.4 16.7 233 1-282 44-316 (510)
6 TIGR02633 xylG D-xylose ABC tr 100.0 8.8E-35 1.9E-39 271.7 17.0 234 1-281 40-312 (500)
7 PRK10982 galactose/methyl gala 100.0 1.2E-34 2.7E-39 270.1 16.7 229 1-282 37-301 (491)
8 TIGR03269 met_CoM_red_A2 methy 100.0 2.7E-34 5.8E-39 269.6 17.9 231 1-282 39-337 (520)
9 PRK11288 araG L-arabinose tran 100.0 1.4E-34 3.1E-39 270.1 15.3 227 1-282 43-306 (501)
10 PRK15439 autoinducer 2 ABC tra 100.0 1.4E-34 3E-39 270.5 15.0 236 1-282 50-316 (510)
11 COG1123 ATPase components of v 100.0 4.3E-34 9.2E-39 259.5 15.8 246 1-282 48-344 (539)
12 PRK15134 microcin C ABC transp 100.0 1.8E-33 3.9E-38 264.4 17.7 239 1-280 48-337 (529)
13 PRK10261 glutathione transport 100.0 1.4E-33 3E-38 269.0 16.9 264 1-282 55-377 (623)
14 PRK10938 putative molybdenum t 100.0 1.4E-32 3E-37 256.3 14.5 236 1-281 42-312 (490)
15 TIGR00955 3a01204 The Eye Pigm 100.0 2.5E-32 5.4E-37 260.2 14.0 176 1-179 64-279 (617)
16 PLN03211 ABC transporter G-25; 100.0 1.2E-31 2.5E-36 256.0 14.9 176 1-180 107-320 (659)
17 COG1122 CbiO ABC-type cobalt t 100.0 2.1E-31 4.7E-36 222.6 10.9 151 1-156 43-228 (235)
18 PRK15064 ABC transporter ATP-b 100.0 1.9E-29 4E-34 237.3 17.5 139 1-155 40-241 (530)
19 COG1126 GlnQ ABC-type polar am 100.0 8.6E-30 1.9E-34 204.2 10.4 152 1-156 41-225 (240)
20 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 6E-29 1.3E-33 234.7 16.3 139 1-155 44-247 (552)
21 PRK11819 putative ABC transpor 100.0 8.6E-29 1.9E-33 233.8 17.3 138 1-154 46-248 (556)
22 COG1135 AbcC ABC-type metal io 100.0 1.4E-29 2.9E-34 213.0 10.5 150 1-155 45-230 (339)
23 PLN03140 ABC transporter G fam 100.0 5E-29 1.1E-33 254.0 13.5 176 1-179 919-1139(1470)
24 TIGR00956 3a01205 Pleiotropic 100.0 8.1E-29 1.7E-33 252.9 14.6 176 1-177 100-321 (1394)
25 PLN03140 ABC transporter G fam 100.0 1E-28 2.2E-33 251.7 14.0 175 1-178 204-449 (1470)
26 TIGR00956 3a01205 Pleiotropic 100.0 9.2E-29 2E-33 252.5 13.6 175 1-179 802-1021(1394)
27 COG4172 ABC-type uncharacteriz 100.0 5.2E-28 1.1E-32 209.4 15.6 228 14-282 67-340 (534)
28 COG3839 MalK ABC-type sugar tr 100.0 1.6E-28 3.5E-33 213.3 9.9 149 1-156 42-223 (338)
29 COG1125 OpuBA ABC-type proline 99.9 9.7E-28 2.1E-32 196.5 9.2 151 1-156 40-225 (309)
30 COG3845 ABC-type uncharacteriz 99.9 1.4E-26 3E-31 205.7 16.4 231 1-281 43-310 (501)
31 PRK13409 putative ATPase RIL; 99.9 3.8E-27 8.3E-32 222.5 13.7 233 1-282 112-392 (590)
32 COG3842 PotA ABC-type spermidi 99.9 3.7E-27 8E-32 205.9 10.2 149 1-155 44-225 (352)
33 COG1118 CysA ABC-type sulfate/ 99.9 2.9E-27 6.3E-32 198.7 8.5 151 1-156 41-227 (345)
34 COG1127 Ttg2A ABC-type transpo 99.9 1E-26 2.2E-31 189.3 8.8 152 1-156 47-235 (263)
35 COG3840 ThiQ ABC-type thiamine 99.9 7.3E-27 1.6E-31 182.2 7.1 147 1-155 38-218 (231)
36 COG1129 MglA ABC-type sugar tr 99.9 8.3E-26 1.8E-30 204.3 15.0 228 1-282 47-312 (500)
37 COG1131 CcmA ABC-type multidru 99.9 1.9E-26 4.1E-31 200.4 10.1 155 1-158 44-228 (293)
38 COG2884 FtsE Predicted ATPase 99.9 1.9E-26 4E-31 181.2 8.6 146 1-151 41-221 (223)
39 COG3638 ABC-type phosphate/pho 99.9 8.3E-26 1.8E-30 183.6 10.6 154 1-156 43-237 (258)
40 PRK11147 ABC transporter ATPas 99.9 5.7E-25 1.2E-29 210.6 17.2 185 82-282 153-372 (635)
41 COG1136 SalX ABC-type antimicr 99.9 9E-26 2E-30 185.6 9.5 139 1-145 44-220 (226)
42 PRK11650 ugpC glycerol-3-phosp 99.9 1.2E-25 2.6E-30 200.3 11.1 149 1-156 43-224 (356)
43 PRK10636 putative ABC transpor 99.9 6.4E-26 1.4E-30 216.8 9.9 68 83-154 147-234 (638)
44 COG1120 FepC ABC-type cobalami 99.9 3.3E-26 7.2E-31 191.8 6.7 163 1-165 41-240 (258)
45 TIGR01186 proV glycine betaine 99.9 1.5E-25 3.2E-30 199.5 11.1 150 1-155 32-218 (363)
46 TIGR03258 PhnT 2-aminoethylpho 99.9 1.2E-25 2.7E-30 200.4 10.4 149 1-156 44-228 (362)
47 TIGR03265 PhnT2 putative 2-ami 99.9 1.2E-25 2.7E-30 200.1 10.3 149 1-156 43-224 (353)
48 PRK11432 fbpC ferric transport 99.9 1.4E-25 3.1E-30 199.4 10.3 148 1-155 45-225 (351)
49 TIGR02314 ABC_MetN D-methionin 99.9 2.1E-25 4.6E-30 197.4 10.7 150 1-155 44-229 (343)
50 PRK09452 potA putrescine/sperm 99.9 2.9E-25 6.4E-30 198.7 10.8 149 1-156 53-234 (375)
51 PRK11607 potG putrescine trans 99.9 3.2E-25 7E-30 198.8 10.4 149 1-156 58-239 (377)
52 PRK13643 cbiO cobalt transport 99.9 5.7E-25 1.2E-29 191.4 11.5 162 1-167 45-247 (288)
53 PRK13537 nodulation ABC transp 99.9 5.1E-25 1.1E-29 193.0 10.7 150 1-156 46-227 (306)
54 PRK13651 cobalt transporter AT 99.9 7.1E-25 1.5E-29 191.8 11.2 159 1-164 46-265 (305)
55 COG1116 TauB ABC-type nitrate/ 99.9 3.2E-25 7E-30 182.7 7.4 133 1-143 42-207 (248)
56 PRK10851 sulfate/thiosulfate t 99.9 1.1E-24 2.3E-29 194.1 10.4 151 1-155 41-225 (353)
57 PLN03073 ABC transporter F fam 99.9 5.9E-25 1.3E-29 211.3 9.3 68 83-154 342-429 (718)
58 TIGR01188 drrA daunorubicin re 99.9 1.6E-24 3.5E-29 189.9 10.3 150 1-156 32-213 (302)
59 KOG0065|consensus 99.9 1.4E-24 2.9E-29 211.5 10.7 174 1-177 154-372 (1391)
60 PRK11000 maltose/maltodextrin 99.9 2.4E-24 5.2E-29 193.2 10.4 148 1-155 42-222 (369)
61 PRK13647 cbiO cobalt transport 99.9 4.1E-24 8.9E-29 184.8 11.0 149 1-154 44-225 (274)
62 PRK13631 cbiO cobalt transport 99.9 4.8E-24 1E-28 187.7 11.3 159 1-164 65-276 (320)
63 cd03261 ABC_Org_Solvent_Resist 99.9 4.4E-24 9.5E-29 180.8 10.1 151 1-155 39-225 (235)
64 PRK13634 cbiO cobalt transport 99.9 5.7E-24 1.2E-28 185.3 10.9 150 1-155 46-234 (290)
65 PRK13536 nodulation factor exp 99.9 5.2E-24 1.1E-28 188.8 10.8 150 1-156 80-261 (340)
66 PRK13650 cbiO cobalt transport 99.9 5.3E-24 1.1E-28 184.6 10.5 158 1-164 46-240 (279)
67 PRK11153 metN DL-methionine tr 99.9 5.9E-24 1.3E-28 189.1 10.7 150 1-155 44-229 (343)
68 TIGR01187 potA spermidine/putr 99.9 5.5E-24 1.2E-28 188.1 10.3 148 1-155 9-189 (325)
69 PRK13637 cbiO cobalt transport 99.9 1.3E-23 2.7E-28 182.9 11.6 151 1-156 46-234 (287)
70 TIGR01288 nodI ATP-binding ABC 99.9 1.2E-23 2.7E-28 184.4 10.8 150 1-156 43-224 (303)
71 cd03265 ABC_DrrA DrrA is the A 99.9 1.6E-23 3.5E-28 175.6 10.6 147 1-153 39-218 (220)
72 COG4175 ProV ABC-type proline/ 99.9 3.6E-24 7.8E-29 180.5 6.1 150 1-155 67-253 (386)
73 cd03219 ABC_Mj1267_LivG_branch 99.9 2E-23 4.4E-28 176.8 10.5 153 1-155 39-231 (236)
74 PRK10070 glycine betaine trans 99.9 2.1E-23 4.6E-28 187.8 10.8 150 1-155 67-253 (400)
75 PRK13635 cbiO cobalt transport 99.9 2.6E-23 5.6E-28 180.2 10.7 149 1-155 46-228 (279)
76 cd03218 ABC_YhbG The ABC trans 99.9 2.4E-23 5.2E-28 176.0 10.2 150 1-155 39-221 (232)
77 COG1117 PstB ABC-type phosphat 99.9 4.1E-23 9E-28 165.3 10.7 150 1-156 46-237 (253)
78 COG1124 DppF ABC-type dipeptid 99.9 2.6E-23 5.5E-28 170.1 9.7 152 1-156 46-231 (252)
79 PRK15079 oligopeptide ABC tran 99.9 3.2E-23 6.9E-28 183.2 10.4 152 1-155 60-250 (331)
80 COG4148 ModC ABC-type molybdat 99.9 1.6E-23 3.5E-28 173.8 7.7 149 1-156 37-218 (352)
81 PRK13646 cbiO cobalt transport 99.9 4E-23 8.8E-28 179.7 10.6 151 1-156 46-235 (286)
82 PRK09536 btuD corrinoid ABC tr 99.9 1.9E-23 4.1E-28 188.2 8.6 153 1-155 42-227 (402)
83 TIGR03522 GldA_ABC_ATP gliding 99.9 3.8E-23 8.2E-28 181.1 10.2 149 1-156 41-221 (301)
84 cd03266 ABC_NatA_sodium_export 99.9 4.3E-23 9.4E-28 172.8 10.1 143 1-149 44-218 (218)
85 TIGR03415 ABC_choXWV_ATP choli 99.9 3.9E-23 8.4E-28 184.9 10.2 150 1-155 63-253 (382)
86 COG0410 LivF ABC-type branched 99.9 3.3E-23 7.2E-28 168.3 8.8 154 1-156 42-226 (237)
87 TIGR00960 3a0501s02 Type II (G 99.9 3.4E-23 7.3E-28 173.2 9.0 140 1-145 42-216 (216)
88 PRK13636 cbiO cobalt transport 99.9 7.6E-23 1.6E-27 177.7 11.3 150 1-155 45-230 (283)
89 cd03296 ABC_CysA_sulfate_impor 99.9 6.6E-23 1.4E-27 174.0 10.7 151 1-155 41-225 (239)
90 cd03295 ABC_OpuCA_Osmoprotecti 99.9 4.9E-23 1.1E-27 175.1 9.9 150 1-155 40-224 (242)
91 cd03258 ABC_MetN_methionine_tr 99.9 4.8E-23 1E-27 174.2 9.7 149 1-154 44-228 (233)
92 cd03234 ABCG_White The White s 99.9 9.3E-23 2E-27 171.7 11.4 146 1-149 46-226 (226)
93 cd03224 ABC_TM1139_LivF_branch 99.9 4.9E-23 1.1E-27 172.9 9.6 151 1-154 39-219 (222)
94 PRK13652 cbiO cobalt transport 99.9 6.6E-23 1.4E-27 177.6 10.6 150 1-155 43-226 (277)
95 cd03268 ABC_BcrA_bacitracin_re 99.9 6.4E-23 1.4E-27 170.5 9.8 142 1-149 39-208 (208)
96 cd03263 ABC_subfamily_A The AB 99.9 6.2E-23 1.3E-27 172.1 9.7 146 1-153 41-218 (220)
97 cd03260 ABC_PstB_phosphate_tra 99.9 4.2E-23 9E-28 173.9 8.6 148 1-153 39-226 (227)
98 PRK14247 phosphate ABC transpo 99.9 9.3E-23 2E-27 174.3 10.7 152 1-155 42-233 (250)
99 PRK13640 cbiO cobalt transport 99.9 9.9E-23 2.2E-27 176.9 10.9 150 1-155 46-231 (282)
100 cd03294 ABC_Pro_Gly_Bertaine T 99.9 1E-22 2.3E-27 175.6 10.9 150 1-155 63-249 (269)
101 PRK13644 cbiO cobalt transport 99.9 1E-22 2.2E-27 176.1 10.8 149 1-155 41-223 (274)
102 cd03264 ABC_drug_resistance_li 99.9 6.4E-23 1.4E-27 170.9 9.0 142 1-149 38-211 (211)
103 PRK09473 oppD oligopeptide tra 99.9 1.1E-22 2.3E-27 179.9 10.7 152 1-155 55-250 (330)
104 cd03256 ABC_PhnC_transporter A 99.9 6.1E-23 1.3E-27 174.4 8.8 153 1-155 40-233 (241)
105 cd03259 ABC_Carb_Solutes_like 99.9 1.1E-22 2.3E-27 169.8 9.9 142 1-149 39-213 (213)
106 PRK13642 cbiO cobalt transport 99.9 1.6E-22 3.4E-27 175.3 11.2 149 1-155 46-228 (277)
107 TIGR02142 modC_ABC molybdenum 99.9 9.5E-23 2.1E-27 182.2 10.0 149 1-156 36-221 (354)
108 PRK13641 cbiO cobalt transport 99.9 1.2E-22 2.7E-27 176.7 10.3 150 1-155 46-233 (287)
109 PRK11144 modC molybdate transp 99.9 9E-23 2E-27 182.1 9.6 149 1-156 37-218 (352)
110 cd03301 ABC_MalK_N The N-termi 99.9 1.6E-22 3.5E-27 168.7 10.4 142 1-149 39-213 (213)
111 PRK09493 glnQ glutamine ABC tr 99.9 1.9E-22 4.2E-27 171.3 10.8 151 1-155 40-224 (240)
112 PRK13648 cbiO cobalt transport 99.9 2.1E-22 4.6E-27 173.8 11.1 149 1-155 48-230 (269)
113 PRK11614 livF leucine/isoleuci 99.9 1.5E-22 3.3E-27 171.6 9.4 152 1-155 44-225 (237)
114 PRK14267 phosphate ABC transpo 99.9 2.4E-22 5.2E-27 172.0 10.6 152 1-155 43-236 (253)
115 COG0444 DppD ABC-type dipeptid 99.9 1.8E-22 3.8E-27 172.1 9.6 154 1-156 44-243 (316)
116 PRK13639 cbiO cobalt transport 99.9 3.2E-22 6.9E-27 173.2 11.4 150 1-155 41-225 (275)
117 PRK13632 cbiO cobalt transport 99.9 3.1E-22 6.6E-27 172.9 11.3 149 1-155 48-230 (271)
118 PRK11022 dppD dipeptide transp 99.9 2.3E-22 5.1E-27 177.6 10.6 152 1-155 46-242 (326)
119 PRK13633 cobalt transporter AT 99.9 2.5E-22 5.5E-27 174.2 10.6 150 1-156 49-233 (280)
120 PRK11831 putative ABC transpor 99.9 2.7E-22 5.8E-27 173.1 10.6 151 1-155 46-232 (269)
121 PRK11264 putative amino-acid A 99.9 3.3E-22 7.1E-27 170.9 11.0 151 1-155 42-232 (250)
122 cd03269 ABC_putative_ATPase Th 99.9 2.1E-22 4.6E-27 167.6 9.6 140 1-149 39-210 (210)
123 PRK11629 lolD lipoprotein tran 99.9 2.9E-22 6.3E-27 169.4 10.3 144 1-150 48-228 (233)
124 PRK10619 histidine/lysine/argi 99.9 3.6E-22 7.9E-27 171.3 10.5 150 1-155 44-240 (257)
125 PRK13649 cbiO cobalt transport 99.9 5.4E-22 1.2E-26 172.3 11.5 150 1-155 46-233 (280)
126 PRK13638 cbiO cobalt transport 99.9 5.7E-22 1.2E-26 171.3 11.5 150 1-155 40-224 (271)
127 PRK10895 lipopolysaccharide AB 99.9 3.7E-22 8.1E-27 169.6 10.1 151 1-155 42-225 (241)
128 PRK11308 dppF dipeptide transp 99.9 4E-22 8.7E-27 176.0 10.4 151 1-155 54-243 (327)
129 PRK14268 phosphate ABC transpo 99.9 4.2E-22 9E-27 171.0 10.3 149 1-155 51-241 (258)
130 PRK10908 cell division protein 99.9 3.9E-22 8.6E-27 167.4 9.8 142 1-147 41-217 (222)
131 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.9 4.2E-22 9.1E-27 166.8 9.7 139 1-145 43-218 (218)
132 cd03293 ABC_NrtD_SsuB_transpor 99.9 5.7E-22 1.2E-26 166.2 10.4 141 1-151 43-218 (220)
133 cd03226 ABC_cobalt_CbiO_domain 99.9 3.4E-22 7.3E-27 165.8 8.9 138 1-146 39-205 (205)
134 PRK11124 artP arginine transpo 99.9 5.3E-22 1.2E-26 168.8 10.3 149 1-154 41-228 (242)
135 PRK11300 livG leucine/isoleuci 99.9 5E-22 1.1E-26 170.3 10.1 153 1-155 44-242 (255)
136 cd03292 ABC_FtsE_transporter F 99.9 4.4E-22 9.5E-27 166.2 9.5 140 1-145 40-214 (214)
137 cd03299 ABC_ModC_like Archeal 99.9 6.5E-22 1.4E-26 167.5 10.7 148 1-155 38-218 (235)
138 PRK10771 thiQ thiamine transpo 99.9 3.5E-22 7.6E-27 168.8 8.7 151 1-155 38-218 (232)
139 TIGR02315 ABC_phnC phosphonate 99.9 2.5E-22 5.3E-27 171.0 7.8 152 1-154 41-233 (243)
140 TIGR00972 3a0107s01c2 phosphat 99.9 7.3E-22 1.6E-26 168.4 10.5 150 1-155 40-231 (247)
141 cd03298 ABC_ThiQ_thiamine_tran 99.9 3.5E-22 7.6E-27 166.4 8.3 145 1-149 37-211 (211)
142 TIGR01978 sufC FeS assembly AT 99.9 6.8E-22 1.5E-26 168.2 10.1 153 1-154 39-232 (243)
143 TIGR03873 F420-0_ABC_ATP propo 99.9 4.6E-22 1E-26 170.5 9.0 152 1-155 40-225 (256)
144 COG1101 PhnK ABC-type uncharac 99.9 2.5E-22 5.5E-27 161.0 6.7 148 1-150 45-232 (263)
145 cd03213 ABCG_EPDR ABCG transpo 99.9 7.8E-22 1.7E-26 162.1 9.7 126 1-149 48-194 (194)
146 COG4555 NatA ABC-type Na+ tran 99.9 5.3E-22 1.2E-26 157.6 8.2 150 1-156 41-222 (245)
147 PRK11231 fecE iron-dicitrate t 99.9 4E-22 8.7E-27 170.8 8.2 153 1-155 41-226 (255)
148 TIGR03740 galliderm_ABC gallid 99.9 1.1E-21 2.5E-26 164.7 10.7 143 1-152 39-209 (223)
149 TIGR02673 FtsE cell division A 99.9 7.7E-22 1.7E-26 164.7 9.6 139 1-144 41-214 (214)
150 PRK15093 antimicrobial peptide 99.9 8E-22 1.7E-26 174.6 10.1 154 1-155 46-247 (330)
151 COG1121 ZnuC ABC-type Mn/Zn tr 99.9 8E-22 1.7E-26 164.6 9.4 150 1-156 43-227 (254)
152 PRK10575 iron-hydroxamate tran 99.9 4.3E-22 9.3E-27 171.5 8.0 153 1-155 50-236 (265)
153 TIGR03410 urea_trans_UrtE urea 99.9 8.4E-22 1.8E-26 166.3 9.6 149 1-154 39-219 (230)
154 TIGR01277 thiQ thiamine ABC tr 99.9 9.6E-22 2.1E-26 164.0 9.6 146 1-150 37-212 (213)
155 TIGR03005 ectoine_ehuA ectoine 99.9 1.2E-21 2.7E-26 167.5 10.6 151 1-155 39-235 (252)
156 PRK14273 phosphate ABC transpo 99.9 1.2E-21 2.5E-26 167.9 10.3 150 1-155 46-237 (254)
157 PRK14269 phosphate ABC transpo 99.9 9E-22 1.9E-26 167.8 9.6 151 1-155 41-229 (246)
158 TIGR01184 ntrCD nitrate transp 99.9 1.1E-21 2.4E-26 165.5 9.9 145 1-153 24-201 (230)
159 PRK13548 hmuV hemin importer A 99.9 9.5E-22 2.1E-26 168.7 9.7 153 1-155 41-229 (258)
160 PRK10253 iron-enterobactin tra 99.9 8.2E-22 1.8E-26 169.8 9.0 153 1-155 46-232 (265)
161 cd03262 ABC_HisP_GlnQ_permease 99.9 1.1E-21 2.4E-26 163.7 9.5 141 1-145 39-213 (213)
162 cd03257 ABC_NikE_OppD_transpor 99.9 1.4E-21 3.1E-26 164.6 10.2 145 1-149 44-228 (228)
163 PRK15112 antimicrobial peptide 99.9 1.3E-21 2.9E-26 168.6 10.2 151 1-155 52-238 (267)
164 COG0411 LivG ABC-type branched 99.9 1.4E-21 3E-26 160.1 9.6 154 1-156 43-239 (250)
165 cd03232 ABC_PDR_domain2 The pl 99.9 1.3E-21 2.7E-26 160.7 9.5 125 1-149 46-192 (192)
166 PRK14250 phosphate ABC transpo 99.9 8.4E-22 1.8E-26 167.4 8.7 149 1-155 42-220 (241)
167 COG4181 Predicted ABC-type tra 99.9 1E-21 2.2E-26 152.1 8.2 145 1-148 49-227 (228)
168 TIGR03864 PQQ_ABC_ATP ABC tran 99.9 2E-21 4.3E-26 164.6 10.9 149 1-156 40-221 (236)
169 TIGR02769 nickel_nikE nickel i 99.9 1.4E-21 3.1E-26 168.3 10.1 151 1-155 50-239 (265)
170 cd03300 ABC_PotA_N PotA is an 99.9 1.9E-21 4.1E-26 164.4 10.4 148 1-155 39-219 (232)
171 PRK09984 phosphonate/organopho 99.9 1.6E-21 3.4E-26 167.8 9.9 153 1-154 43-240 (262)
172 COG4525 TauB ABC-type taurine 99.9 1.7E-21 3.8E-26 153.9 9.3 142 1-152 44-220 (259)
173 PRK14272 phosphate ABC transpo 99.9 2.3E-21 4.9E-26 165.9 10.9 151 1-155 43-235 (252)
174 PRK14235 phosphate transporter 99.9 1.9E-21 4.2E-26 167.6 10.1 151 1-155 58-250 (267)
175 PRK14256 phosphate ABC transpo 99.9 2.2E-21 4.7E-26 166.0 10.4 151 1-155 43-235 (252)
176 PRK03695 vitamin B12-transport 99.9 1.1E-21 2.5E-26 167.2 8.6 148 1-155 35-221 (248)
177 cd03225 ABC_cobalt_CbiO_domain 99.9 1.3E-21 2.9E-26 163.0 8.7 139 1-144 40-211 (211)
178 TIGR02211 LolD_lipo_ex lipopro 99.9 1.8E-21 3.9E-26 163.3 9.4 140 1-146 44-220 (221)
179 PRK14274 phosphate ABC transpo 99.9 1.9E-21 4.1E-26 167.0 9.7 150 1-155 51-242 (259)
180 cd03297 ABC_ModC_molybdenum_tr 99.9 1.4E-21 3.1E-26 163.1 8.5 146 1-149 36-214 (214)
181 cd03233 ABC_PDR_domain1 The pl 99.9 2.5E-21 5.4E-26 160.1 9.8 133 1-149 46-202 (202)
182 PRK13645 cbiO cobalt transport 99.9 2E-21 4.2E-26 169.5 9.6 150 1-155 50-239 (289)
183 COG4988 CydD ABC-type transpor 99.9 9.5E-22 2.1E-26 178.7 7.9 146 1-156 360-543 (559)
184 PRK11174 cysteine/glutathione 99.9 9.5E-22 2E-26 187.5 8.3 145 1-156 389-572 (588)
185 PRK14242 phosphate transporter 99.9 2.7E-21 5.9E-26 165.5 10.3 150 1-155 45-236 (253)
186 PRK11248 tauB taurine transpor 99.9 3.1E-21 6.7E-26 165.1 10.5 141 1-151 40-215 (255)
187 TIGR03411 urea_trans_UrtD urea 99.9 2.6E-21 5.5E-26 164.6 9.8 152 1-155 41-230 (242)
188 TIGR01257 rim_protein retinal- 99.8 2.6E-21 5.7E-26 200.0 11.1 152 1-158 1978-2161(2272)
189 PRK14270 phosphate ABC transpo 99.8 3.2E-21 6.9E-26 164.9 9.9 150 1-155 43-234 (251)
190 TIGR00968 3a0106s01 sulfate AB 99.8 3.6E-21 7.8E-26 163.1 10.1 148 1-155 39-219 (237)
191 COG1137 YhbG ABC-type (unclass 99.8 1.2E-21 2.6E-26 155.4 6.6 153 1-156 43-228 (243)
192 TIGR02770 nickel_nikD nickel i 99.8 4.1E-21 8.8E-26 162.1 10.2 149 1-155 25-214 (230)
193 COG2274 SunT ABC-type bacterio 99.8 1.3E-21 2.8E-26 186.6 7.8 146 1-156 512-696 (709)
194 PRK14241 phosphate transporter 99.8 5E-21 1.1E-25 164.3 10.6 151 1-155 43-241 (258)
195 PRK10744 pstB phosphate transp 99.8 4.1E-21 8.9E-26 165.0 10.0 150 1-155 52-243 (260)
196 PRK10584 putative ABC transpor 99.8 4.9E-21 1.1E-25 161.4 10.1 141 1-147 49-226 (228)
197 PRK14240 phosphate transporter 99.8 5.3E-21 1.1E-25 163.4 10.2 150 1-155 42-233 (250)
198 PRK14245 phosphate ABC transpo 99.8 5.2E-21 1.1E-25 163.5 9.9 150 1-155 42-233 (250)
199 PRK14253 phosphate ABC transpo 99.8 5E-21 1.1E-25 163.5 9.8 150 1-155 42-232 (249)
200 PRK10261 glutathione transport 99.8 5E-21 1.1E-25 183.0 10.8 151 1-155 363-552 (623)
201 TIGR01257 rim_protein retinal- 99.8 4.6E-21 9.9E-26 198.3 11.1 149 1-156 969-1149(2272)
202 PRK15134 microcin C ABC transp 99.8 4.7E-21 1E-25 180.4 10.3 151 1-155 325-514 (529)
203 PRK14249 phosphate ABC transpo 99.8 6.3E-21 1.4E-25 163.1 10.1 150 1-155 43-234 (251)
204 COG0488 Uup ATPase components 99.8 5.4E-20 1.2E-24 170.3 17.0 134 1-150 42-234 (530)
205 COG4559 ABC-type hemin transpo 99.8 4.4E-21 9.5E-26 153.5 8.4 153 1-155 40-229 (259)
206 PRK14259 phosphate ABC transpo 99.8 3.4E-21 7.4E-26 166.2 8.4 153 1-156 52-253 (269)
207 TIGR00630 uvra excinuclease AB 99.8 7.1E-21 1.5E-25 185.9 11.4 106 48-155 432-582 (924)
208 cd03252 ABCC_Hemolysin The ABC 99.8 2.6E-21 5.7E-26 164.0 7.3 146 1-156 41-225 (237)
209 PRK14239 phosphate transporter 99.8 9.8E-21 2.1E-25 162.0 10.8 150 1-155 44-235 (252)
210 PRK14262 phosphate ABC transpo 99.8 8.9E-21 1.9E-25 162.0 10.5 150 1-155 42-233 (250)
211 PRK11247 ssuB aliphatic sulfon 99.8 5.4E-21 1.2E-25 163.6 9.0 139 1-151 51-218 (257)
212 PRK14244 phosphate ABC transpo 99.8 6.9E-21 1.5E-25 162.8 9.5 151 1-155 44-236 (251)
213 COG1123 ATPase components of v 99.8 7.9E-21 1.7E-25 173.2 10.4 152 1-156 330-519 (539)
214 PRK14236 phosphate transporter 99.8 9.9E-21 2.2E-25 163.6 10.5 150 1-155 64-255 (272)
215 PRK13547 hmuV hemin importer A 99.8 4.7E-21 1E-25 165.3 8.3 154 1-155 40-243 (272)
216 PRK14237 phosphate transporter 99.8 9.8E-21 2.1E-25 163.2 10.2 150 1-155 59-250 (267)
217 PRK14257 phosphate ABC transpo 99.8 9.9E-21 2.1E-25 167.2 10.4 149 1-155 121-312 (329)
218 TIGR03797 NHPM_micro_ABC2 NHPM 99.8 3.4E-21 7.4E-26 186.7 7.9 143 1-156 492-673 (686)
219 PRK14261 phosphate ABC transpo 99.8 1.2E-20 2.5E-25 161.6 10.3 150 1-155 45-236 (253)
220 PRK14258 phosphate ABC transpo 99.8 1.1E-20 2.4E-25 162.4 10.2 152 1-156 46-245 (261)
221 cd03267 ABC_NatA_like Similar 99.8 1.4E-20 3E-25 159.4 10.5 143 1-149 60-236 (236)
222 PRK14271 phosphate ABC transpo 99.8 1.2E-20 2.7E-25 163.2 10.3 150 1-155 60-250 (276)
223 PRK00349 uvrA excinuclease ABC 99.8 1.5E-20 3.3E-25 183.9 12.1 178 47-275 433-655 (943)
224 TIGR01193 bacteriocin_ABC ABC- 99.8 2.9E-21 6.2E-26 187.8 6.9 146 1-156 513-697 (708)
225 PRK10790 putative multidrug tr 99.8 4.2E-21 9.1E-26 183.2 7.9 145 1-156 380-563 (592)
226 PRK11176 lipid transporter ATP 99.8 3.4E-21 7.4E-26 183.5 6.9 147 1-156 382-567 (582)
227 cd03235 ABC_Metallic_Cations A 99.8 5.8E-21 1.3E-25 159.3 7.5 141 1-149 38-213 (213)
228 COG4152 ABC-type uncharacteriz 99.8 2.7E-20 5.9E-25 152.0 10.7 148 1-157 41-220 (300)
229 TIGR03796 NHPM_micro_ABC1 NHPM 99.8 4.1E-21 8.9E-26 186.8 7.0 144 1-156 518-700 (710)
230 PRK14238 phosphate transporter 99.8 1.8E-20 3.8E-25 161.9 10.1 150 1-155 63-254 (271)
231 PRK14260 phosphate ABC transpo 99.8 1.7E-20 3.7E-25 161.0 9.9 150 1-155 46-242 (259)
232 PRK14263 phosphate ABC transpo 99.8 1.3E-20 2.9E-25 161.7 9.2 153 1-156 47-245 (261)
233 PRK14248 phosphate ABC transpo 99.8 2E-20 4.3E-25 161.4 10.2 150 1-155 60-251 (268)
234 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.8 5.4E-21 1.2E-25 162.2 6.5 146 1-156 42-226 (238)
235 cd03289 ABCC_CFTR2 The CFTR su 99.8 7.8E-21 1.7E-25 163.8 7.5 144 1-156 43-225 (275)
236 PRK14255 phosphate ABC transpo 99.8 2.9E-20 6.2E-25 159.1 10.9 150 1-155 44-235 (252)
237 TIGR03375 type_I_sec_LssB type 99.8 6.2E-21 1.3E-25 185.1 7.6 147 1-157 504-689 (694)
238 PRK14251 phosphate ABC transpo 99.8 2.4E-20 5.3E-25 159.4 10.2 150 1-155 43-234 (251)
239 cd03369 ABCC_NFT1 Domain 2 of 99.8 7.2E-21 1.6E-25 158.0 6.6 140 1-151 47-207 (207)
240 TIGR03771 anch_rpt_ABC anchore 99.8 1.3E-20 2.8E-25 158.2 8.0 147 1-155 19-200 (223)
241 PRK14275 phosphate ABC transpo 99.8 2.4E-20 5.3E-25 162.2 10.0 150 1-155 78-269 (286)
242 TIGR02982 heterocyst_DevA ABC 99.8 2.2E-20 4.8E-25 156.6 9.2 141 1-146 44-220 (220)
243 cd03230 ABC_DR_subfamily_A Thi 99.8 1.4E-20 3E-25 151.9 7.4 124 1-145 39-173 (173)
244 PRK14254 phosphate ABC transpo 99.8 2.9E-20 6.4E-25 161.5 9.9 152 1-155 78-268 (285)
245 TIGR01842 type_I_sec_PrtD type 99.8 1.5E-20 3.3E-25 177.6 8.5 146 1-155 357-541 (544)
246 COG1132 MdlB ABC-type multidru 99.8 9.2E-21 2E-25 180.0 7.1 146 1-156 368-552 (567)
247 PRK13549 xylose transporter AT 99.8 2.2E-20 4.7E-25 175.0 9.4 153 1-154 301-492 (506)
248 cd03251 ABCC_MsbA MsbA is an e 99.8 1.5E-20 3.2E-25 159.1 7.5 146 1-156 41-225 (234)
249 cd03215 ABC_Carb_Monos_II This 99.8 2E-20 4.3E-25 152.3 8.0 129 1-145 39-182 (182)
250 PRK14243 phosphate transporter 99.8 2.6E-20 5.6E-25 160.3 8.4 152 1-155 49-247 (264)
251 PRK10418 nikD nickel transport 99.8 5.6E-20 1.2E-24 157.4 10.3 151 1-155 42-229 (254)
252 PRK14246 phosphate ABC transpo 99.8 4.7E-20 1E-24 158.0 9.7 151 1-155 49-240 (257)
253 COG4604 CeuD ABC-type enteroch 99.8 1.4E-20 3E-25 149.0 5.7 153 1-156 40-225 (252)
254 PRK14266 phosphate ABC transpo 99.8 4.8E-20 1E-24 157.5 9.5 150 1-155 42-233 (250)
255 PRK13657 cyclic beta-1,2-gluca 99.8 2.3E-20 5.1E-25 177.9 8.1 145 1-155 374-557 (588)
256 cd03253 ABCC_ATM1_transporter 99.8 2.5E-20 5.4E-25 157.9 7.4 145 1-155 40-223 (236)
257 cd03217 ABC_FeS_Assembly ABC-t 99.8 3.4E-20 7.4E-25 153.1 8.0 132 1-156 39-193 (200)
258 PRK11160 cysteine/glutathione 99.8 2.3E-20 5E-25 177.2 7.9 146 1-156 379-562 (574)
259 PRK11701 phnK phosphonate C-P 99.8 6.5E-20 1.4E-24 157.4 9.9 150 1-155 45-240 (258)
260 COG4598 HisP ABC-type histidin 99.8 2E-20 4.4E-25 146.1 6.1 152 1-156 45-241 (256)
261 CHL00131 ycf16 sulfate ABC tra 99.8 1.1E-19 2.4E-24 155.4 11.2 152 1-153 46-238 (252)
262 cd03254 ABCC_Glucan_exporter_l 99.8 2.4E-20 5.1E-25 157.3 6.9 145 1-155 42-225 (229)
263 PRK10762 D-ribose transporter 99.8 4E-20 8.7E-25 173.0 9.0 152 1-154 291-482 (501)
264 PRK10419 nikE nickel transport 99.8 8.4E-20 1.8E-24 157.5 10.3 151 1-155 51-240 (268)
265 TIGR01846 type_I_sec_HlyB type 99.8 2.4E-20 5.2E-25 180.9 7.5 146 1-156 496-680 (694)
266 KOG0057|consensus 99.8 2.5E-20 5.4E-25 167.6 6.9 145 1-156 391-574 (591)
267 PRK14265 phosphate ABC transpo 99.8 6.1E-20 1.3E-24 158.8 8.8 152 1-155 59-257 (274)
268 PRK10789 putative multidrug tr 99.8 3.7E-20 8E-25 175.7 7.6 146 1-156 354-538 (569)
269 TIGR03269 met_CoM_red_A2 methy 99.8 5.4E-20 1.2E-24 172.9 8.4 150 1-156 323-517 (520)
270 TIGR00958 3a01208 Conjugate Tr 99.8 3.1E-20 6.6E-25 180.3 6.6 144 1-156 520-702 (711)
271 TIGR02633 xylG D-xylose ABC tr 99.8 6.7E-20 1.5E-24 171.6 8.3 152 1-153 299-489 (500)
272 cd03245 ABCC_bacteriocin_expor 99.8 6.2E-20 1.3E-24 153.9 6.9 139 1-149 43-220 (220)
273 PRK14252 phosphate ABC transpo 99.8 1.5E-19 3.2E-24 155.7 9.5 149 1-155 55-248 (265)
274 cd03246 ABCC_Protease_Secretio 99.8 4.4E-20 9.5E-25 149.0 5.7 122 1-145 41-173 (173)
275 TIGR03608 L_ocin_972_ABC putat 99.8 2.1E-19 4.5E-24 149.1 9.3 134 1-140 37-206 (206)
276 cd03229 ABC_Class3 This class 99.8 6.1E-20 1.3E-24 148.8 6.0 126 1-144 39-178 (178)
277 PRK11288 araG L-arabinose tran 99.8 9.4E-20 2E-24 170.5 8.0 153 1-155 292-484 (501)
278 TIGR01192 chvA glucan exporter 99.8 1.1E-19 2.3E-24 173.0 8.3 146 1-156 374-558 (585)
279 TIGR02203 MsbA_lipidA lipid A 99.8 6.7E-20 1.5E-24 174.3 6.8 146 1-155 371-555 (571)
280 PRK14264 phosphate ABC transpo 99.8 3.4E-19 7.3E-24 156.4 10.2 152 1-155 84-288 (305)
281 TIGR02323 CP_lyasePhnK phospho 99.8 2.6E-19 5.7E-24 153.2 9.2 153 1-155 42-237 (253)
282 PRK09700 D-allose transporter 99.8 9.7E-20 2.1E-24 170.8 7.2 149 1-151 302-493 (510)
283 PRK15439 autoinducer 2 ABC tra 99.8 2.2E-19 4.8E-24 168.3 9.0 153 1-155 302-491 (510)
284 COG4618 ArpD ABC-type protease 99.8 1.8E-19 3.9E-24 160.7 7.8 150 1-159 375-563 (580)
285 PRK10535 macrolide transporter 99.8 3.6E-19 7.7E-24 170.9 10.4 149 1-155 47-231 (648)
286 cd03244 ABCC_MRP_domain2 Domai 99.8 1.1E-19 2.5E-24 152.4 6.2 139 1-150 43-220 (221)
287 TIGR02204 MsbA_rel ABC transpo 99.8 1.1E-19 2.5E-24 172.9 6.9 145 1-155 379-562 (576)
288 PRK09580 sufC cysteine desulfu 99.8 4.8E-19 1E-23 151.2 10.0 153 1-154 40-233 (248)
289 PRK10247 putative ABC transpor 99.8 3.7E-19 8E-24 149.6 8.5 145 1-150 46-221 (225)
290 cd03288 ABCC_SUR2 The SUR doma 99.8 9.2E-20 2E-24 156.3 4.8 145 1-156 60-243 (257)
291 COG4172 ABC-type uncharacteriz 99.8 8.1E-19 1.8E-23 152.7 10.6 152 1-156 326-516 (534)
292 PRK00635 excinuclease ABC subu 99.8 5.2E-19 1.1E-23 180.4 11.0 106 48-155 424-571 (1809)
293 cd03247 ABCC_cytochrome_bd The 99.8 1.8E-19 3.9E-24 146.1 5.6 118 1-149 41-178 (178)
294 KOG0055|consensus 99.8 1.4E-19 3.1E-24 176.7 5.7 145 1-155 392-575 (1228)
295 PRK13543 cytochrome c biogenes 99.8 1E-18 2.2E-23 145.9 9.9 134 1-142 50-212 (214)
296 PRK15056 manganese/iron transp 99.8 4.4E-19 9.6E-24 153.3 8.0 148 1-155 46-229 (272)
297 PTZ00265 multidrug resistance 99.8 2.6E-19 5.6E-24 183.9 6.2 133 15-155 1275-1451(1466)
298 TIGR01166 cbiO cobalt transpor 99.8 2.4E-18 5.1E-23 141.0 10.7 123 1-127 31-188 (190)
299 PLN03232 ABC transporter C fam 99.8 2.7E-19 5.9E-24 184.9 6.1 145 1-156 1275-1458(1495)
300 cd03231 ABC_CcmA_heme_exporter 99.8 2E-18 4.4E-23 142.6 9.0 132 1-140 39-198 (201)
301 PLN03130 ABC transporter C fam 99.8 5.9E-19 1.3E-23 182.9 7.1 144 1-155 1278-1460(1622)
302 PRK13546 teichoic acids export 99.8 4E-18 8.6E-23 146.4 11.0 138 1-156 63-232 (264)
303 PTZ00243 ABC transporter; Prov 99.8 6.2E-19 1.3E-23 182.4 7.0 145 1-156 1349-1533(1560)
304 PRK13538 cytochrome c biogenes 99.8 2.4E-18 5.3E-23 142.5 9.2 135 1-140 40-202 (204)
305 KOG0058|consensus 99.8 7.1E-19 1.5E-23 163.3 6.3 146 1-156 507-691 (716)
306 cd03248 ABCC_TAP TAP, the Tran 99.8 1.9E-19 4.1E-24 151.5 2.2 135 1-145 53-226 (226)
307 COG4987 CydC ABC-type transpor 99.8 5.5E-19 1.2E-23 158.8 5.2 146 1-156 377-561 (573)
308 TIGR02324 CP_lyasePhnL phospho 99.8 2.7E-18 5.8E-23 144.3 9.0 135 1-140 47-222 (224)
309 TIGR01189 ccmA heme ABC export 99.8 1.9E-18 4.1E-23 142.5 7.7 123 1-128 39-189 (198)
310 COG4161 ArtP ABC-type arginine 99.8 2.4E-18 5.2E-23 132.3 7.5 150 1-154 41-228 (242)
311 KOG0059|consensus 99.7 4.2E-18 9.1E-23 168.1 10.9 151 1-156 604-787 (885)
312 TIGR00957 MRP_assoc_pro multi 99.7 1.1E-18 2.4E-23 180.7 7.0 144 1-156 1325-1508(1522)
313 TIGR01271 CFTR_protein cystic 99.7 1.8E-18 4E-23 178.7 7.5 144 1-156 1258-1440(1490)
314 PRK00635 excinuclease ABC subu 99.7 8E-18 1.7E-22 171.9 11.9 107 48-156 760-906 (1809)
315 PRK13540 cytochrome c biogenes 99.7 9.7E-18 2.1E-22 138.5 10.0 131 1-139 40-198 (200)
316 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.7 8.7E-18 1.9E-22 141.2 9.4 132 1-149 61-224 (224)
317 PRK13545 tagH teichoic acids e 99.7 1.1E-17 2.4E-22 153.3 10.7 137 1-155 63-231 (549)
318 cd03237 ABC_RNaseL_inhibitor_d 99.7 8.2E-18 1.8E-22 143.0 9.2 150 1-164 38-219 (246)
319 PRK09544 znuC high-affinity zi 99.7 6.7E-18 1.5E-22 144.1 8.4 135 1-155 43-208 (251)
320 cd03228 ABCC_MRP_Like The MRP 99.7 2.5E-18 5.4E-23 138.5 5.3 120 1-144 41-171 (171)
321 PRK13539 cytochrome c biogenes 99.7 1.4E-17 3.1E-22 138.2 9.2 130 1-140 41-198 (207)
322 TIGR02857 CydD thiol reductant 99.7 5.2E-18 1.1E-22 160.0 7.1 130 1-140 361-529 (529)
323 PRK10982 galactose/methyl gala 99.7 1.1E-17 2.3E-22 156.4 8.7 147 1-152 287-476 (491)
324 COG4619 ABC-type uncharacteriz 99.7 3.5E-18 7.6E-23 132.2 3.8 141 1-145 42-212 (223)
325 cd03214 ABC_Iron-Siderophores_ 99.7 8.6E-18 1.9E-22 136.5 4.0 121 1-149 38-180 (180)
326 COG4674 Uncharacterized ABC-ty 99.7 4.8E-17 1E-21 128.8 8.0 151 1-155 44-234 (249)
327 PTZ00265 multidrug resistance 99.7 1.5E-17 3.2E-22 171.1 6.6 139 1-143 424-655 (1466)
328 cd03290 ABCC_SUR1_N The SUR do 99.7 1.9E-17 4E-22 138.6 5.9 134 1-144 40-218 (218)
329 cd03216 ABC_Carb_Monos_I This 99.7 2.6E-17 5.7E-22 131.4 6.3 112 1-147 39-162 (163)
330 cd03250 ABCC_MRP_domain1 Domai 99.7 3E-17 6.4E-22 136.0 6.7 121 1-144 44-204 (204)
331 PRK10522 multidrug transporter 99.7 2.8E-17 6E-22 155.5 6.6 135 1-148 362-530 (547)
332 COG0396 sufC Cysteine desulfur 99.7 2.3E-16 5.1E-21 128.2 10.9 162 1-165 43-242 (251)
333 cd03291 ABCC_CFTR1 The CFTR su 99.7 4.4E-17 9.6E-22 141.0 7.3 134 1-155 76-246 (282)
334 TIGR02868 CydC thiol reductant 99.7 4.5E-17 9.7E-22 153.6 7.8 117 1-126 374-529 (529)
335 TIGR01194 cyc_pep_trnsptr cycl 99.7 2.9E-17 6.3E-22 155.5 6.1 136 1-148 381-551 (555)
336 PRK10938 putative molybdenum t 99.7 7.9E-17 1.7E-21 150.5 6.8 147 1-148 299-484 (490)
337 KOG0055|consensus 99.7 7.7E-17 1.7E-21 157.8 5.4 147 1-156 1029-1213(1228)
338 PRK13541 cytochrome c biogenes 99.7 6.4E-16 1.4E-20 127.1 9.9 126 1-137 39-192 (195)
339 cd03236 ABC_RNaseL_inhibitor_d 99.6 2.6E-16 5.5E-21 134.5 6.6 141 1-149 39-220 (255)
340 PRK15064 ABC transporter ATP-b 99.6 5.5E-16 1.2E-20 146.1 9.4 135 1-155 358-524 (530)
341 cd03223 ABCD_peroxisomal_ALDP 99.6 2.8E-16 6.1E-21 125.8 6.3 104 1-143 40-163 (166)
342 PRK13409 putative ATPase RIL; 99.6 5E-16 1.1E-20 147.2 9.0 147 1-164 378-557 (590)
343 PRK15177 Vi polysaccharide exp 99.6 7.6E-16 1.6E-20 128.3 9.0 140 1-159 26-195 (213)
344 COG4136 ABC-type uncharacteriz 99.6 2.9E-16 6.4E-21 119.4 4.8 123 1-129 41-198 (213)
345 PRK11819 putative ABC transpor 99.6 2.1E-15 4.6E-20 142.8 9.9 138 1-155 363-532 (556)
346 COG4586 ABC-type uncharacteriz 99.6 1.6E-15 3.5E-20 126.1 7.4 151 1-157 63-247 (325)
347 COG0178 UvrA Excinuclease ATPa 99.6 3.9E-15 8.6E-20 139.6 10.6 107 48-156 426-577 (935)
348 COG4138 BtuD ABC-type cobalami 99.6 2.3E-15 5.1E-20 117.4 7.5 144 1-155 38-220 (248)
349 COG4167 SapF ABC-type antimicr 99.6 4.9E-15 1.1E-19 116.4 8.8 152 1-156 52-239 (267)
350 TIGR03719 ABC_ABC_ChvD ATP-bin 99.6 4.7E-15 1E-19 140.4 10.0 137 1-155 361-530 (552)
351 TIGR00957 MRP_assoc_pro multi 99.6 2.2E-15 4.7E-20 156.5 8.1 132 1-155 677-849 (1522)
352 TIGR01271 CFTR_protein cystic 99.6 2.7E-15 5.8E-20 155.4 8.4 131 1-155 465-635 (1490)
353 COG4608 AppF ABC-type oligopep 99.6 5.4E-15 1.2E-19 123.9 6.7 121 1-156 52-199 (268)
354 COG1245 Predicted ATPase, RNas 99.6 5.5E-14 1.2E-18 124.4 12.6 82 51-139 179-285 (591)
355 PLN03130 ABC transporter C fam 99.5 6.3E-15 1.4E-19 153.2 7.5 131 1-155 656-827 (1622)
356 PLN03232 ABC transporter C fam 99.5 5.6E-15 1.2E-19 153.2 6.9 132 1-155 656-827 (1495)
357 cd03222 ABC_RNaseL_inhibitor T 99.5 1.2E-14 2.5E-19 117.2 6.4 110 1-154 38-161 (177)
358 KOG0927|consensus 99.5 4.4E-14 9.6E-19 127.3 10.2 191 84-284 220-445 (614)
359 COG1121 ZnuC ABC-type Mn/Zn tr 99.5 9.8E-15 2.1E-19 122.2 5.1 41 242-282 17-57 (254)
360 PRK10636 putative ABC transpor 99.5 2.2E-14 4.8E-19 137.7 8.3 135 1-156 351-517 (638)
361 TIGR00954 3a01203 Peroxysomal 99.5 2.4E-14 5.2E-19 137.9 7.5 127 1-145 491-657 (659)
362 COG1119 ModF ABC-type molybden 99.5 5E-15 1.1E-19 121.7 2.4 148 1-150 70-256 (257)
363 KOG0056|consensus 99.5 9.2E-15 2E-19 130.3 3.6 146 1-156 577-761 (790)
364 PTZ00243 ABC transporter; Prov 99.5 4.5E-14 9.7E-19 146.7 8.2 132 1-155 699-869 (1560)
365 cd00267 ABC_ATPase ABC (ATP-bi 99.5 3.5E-14 7.6E-19 112.7 5.8 109 1-144 38-157 (157)
366 PRK11147 ABC transporter ATPas 99.5 6E-14 1.3E-18 134.8 8.4 137 1-154 358-526 (635)
367 PLN03073 ABC transporter F fam 99.5 1E-13 2.3E-18 133.9 10.0 137 1-156 548-714 (718)
368 COG5265 ATM1 ABC-type transpor 99.5 1.5E-14 3.2E-19 126.9 2.9 146 1-156 302-486 (497)
369 COG1134 TagH ABC-type polysacc 99.5 2.5E-13 5.5E-18 111.9 9.4 142 1-159 66-239 (249)
370 COG1129 MglA ABC-type sugar tr 99.5 1.6E-13 3.5E-18 124.9 8.9 149 2-152 299-486 (500)
371 COG1116 TauB ABC-type nitrate/ 99.5 5.9E-14 1.3E-18 116.2 5.0 41 242-282 16-56 (248)
372 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.4 9.1E-14 2E-18 108.6 5.0 95 1-144 39-144 (144)
373 COG1134 TagH ABC-type polysacc 99.4 1E-13 2.2E-18 114.2 4.9 41 242-282 40-80 (249)
374 COG0410 LivF ABC-type branched 99.4 1.4E-13 3.1E-18 112.3 5.2 41 241-281 15-55 (237)
375 COG3845 ABC-type uncharacteriz 99.4 1E-12 2.2E-17 117.8 10.7 151 2-154 298-490 (501)
376 KOG0054|consensus 99.4 2.2E-13 4.8E-18 136.5 6.9 132 1-155 560-730 (1381)
377 COG1119 ModF ABC-type molybden 99.4 1.4E-13 3.1E-18 113.3 4.6 43 240-282 42-84 (257)
378 cd03216 ABC_Carb_Monos_I This 99.4 2.9E-13 6.4E-18 108.0 5.5 41 242-282 13-53 (163)
379 COG3638 ABC-type phosphate/pho 99.4 3.7E-13 8E-18 110.1 5.3 42 241-282 16-57 (258)
380 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.4 3.7E-13 8.1E-18 112.6 5.3 40 243-282 18-57 (218)
381 COG1131 CcmA ABC-type multidru 99.4 3.8E-13 8.3E-18 117.1 5.3 41 242-282 18-58 (293)
382 TIGR00960 3a0501s02 Type II (G 99.4 4.9E-13 1.1E-17 111.7 5.3 41 242-282 16-56 (216)
383 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.4 5.9E-13 1.3E-17 104.0 5.4 41 242-282 13-53 (144)
384 COG1136 SalX ABC-type antimicr 99.4 4.9E-13 1.1E-17 110.4 5.0 41 242-282 18-58 (226)
385 PRK10247 putative ABC transpor 99.4 5.2E-13 1.1E-17 112.3 5.3 41 242-282 20-60 (225)
386 cd03267 ABC_NatA_like Similar 99.4 5.5E-13 1.2E-17 112.9 5.4 42 241-282 33-74 (236)
387 PRK13536 nodulation factor exp 99.4 5.4E-13 1.2E-17 118.5 5.4 42 241-282 53-94 (340)
388 PRK09544 znuC high-affinity zi 99.4 6.6E-13 1.4E-17 113.4 5.5 41 242-282 17-57 (251)
389 COG0411 LivG ABC-type branched 99.4 1.3E-13 2.8E-18 113.5 1.0 42 241-282 16-57 (250)
390 cd03293 ABC_NrtD_SsuB_transpor 99.4 6.7E-13 1.4E-17 111.2 5.3 40 243-282 18-57 (220)
391 PRK11247 ssuB aliphatic sulfon 99.4 7E-13 1.5E-17 113.5 5.5 41 242-282 25-65 (257)
392 PRK13537 nodulation ABC transp 99.4 6.3E-13 1.4E-17 116.7 5.3 41 242-282 20-60 (306)
393 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.4 7.6E-13 1.7E-17 111.2 5.4 42 241-282 34-75 (224)
394 PRK13637 cbiO cobalt transport 99.4 7.4E-13 1.6E-17 115.3 5.4 41 242-282 20-60 (287)
395 PRK11629 lolD lipoprotein tran 99.4 7.7E-13 1.7E-17 111.9 5.4 41 242-282 22-62 (233)
396 PRK11831 putative ABC transpor 99.4 7.9E-13 1.7E-17 114.2 5.4 41 242-282 20-60 (269)
397 cd03223 ABCD_peroxisomal_ALDP 99.4 8.3E-13 1.8E-17 105.7 5.1 41 242-282 14-54 (166)
398 PRK13646 cbiO cobalt transport 99.4 8.1E-13 1.8E-17 115.0 5.4 41 242-282 20-60 (286)
399 PRK10895 lipopolysaccharide AB 99.4 8.2E-13 1.8E-17 112.2 5.3 41 242-282 16-56 (241)
400 TIGR01288 nodI ATP-binding ABC 99.3 7.9E-13 1.7E-17 116.1 5.3 41 242-282 17-57 (303)
401 COG3842 PotA ABC-type spermidi 99.3 7.6E-13 1.6E-17 116.2 5.1 42 241-282 17-58 (352)
402 PRK14250 phosphate ABC transpo 99.3 9.1E-13 2E-17 112.0 5.4 41 242-282 16-56 (241)
403 cd03258 ABC_MetN_methionine_tr 99.3 8.2E-13 1.8E-17 111.6 5.1 40 243-282 19-58 (233)
404 cd03228 ABCC_MRP_Like The MRP 99.3 1.1E-12 2.3E-17 105.6 5.5 40 243-282 16-55 (171)
405 COG3839 MalK ABC-type sugar tr 99.3 8.2E-13 1.8E-17 115.4 5.1 41 242-282 16-56 (338)
406 PRK10584 putative ABC transpor 99.3 8.9E-13 1.9E-17 111.1 5.2 40 243-282 24-63 (228)
407 PRK13543 cytochrome c biogenes 99.3 1E-12 2.2E-17 109.7 5.3 41 242-282 24-64 (214)
408 PRK13641 cbiO cobalt transport 99.3 1E-12 2.2E-17 114.5 5.5 41 242-282 20-60 (287)
409 KOG0054|consensus 99.3 1.6E-12 3.5E-17 130.4 7.5 145 1-156 1179-1362(1381)
410 TIGR02211 LolD_lipo_ex lipopro 99.3 1E-12 2.2E-17 110.1 5.3 41 242-282 18-58 (221)
411 cd03238 ABC_UvrA The excision 99.3 8.4E-13 1.8E-17 106.3 4.5 114 1-149 34-170 (176)
412 cd03294 ABC_Pro_Gly_Bertaine T 99.3 1.1E-12 2.5E-17 113.2 5.5 42 241-282 36-77 (269)
413 cd03266 ABC_NatA_sodium_export 99.3 1.1E-12 2.3E-17 109.8 5.2 40 243-282 19-58 (218)
414 PRK14241 phosphate transporter 99.3 1E-12 2.2E-17 112.8 5.1 40 242-281 17-56 (258)
415 cd03257 ABC_NikE_OppD_transpor 99.3 9.8E-13 2.1E-17 110.8 4.9 40 243-282 19-58 (228)
416 PRK11264 putative amino-acid A 99.3 1E-12 2.3E-17 112.2 5.1 41 242-282 16-56 (250)
417 PRK11614 livF leucine/isoleuci 99.3 1.1E-12 2.4E-17 111.1 5.2 41 242-282 18-58 (237)
418 PRK11701 phnK phosphonate C-P 99.3 1.2E-12 2.7E-17 112.3 5.6 41 242-282 19-59 (258)
419 PRK10575 iron-hydroxamate tran 99.3 1.1E-12 2.3E-17 113.1 5.1 41 242-282 24-64 (265)
420 PRK13651 cobalt transporter AT 99.3 1.3E-12 2.8E-17 114.6 5.5 40 243-282 21-60 (305)
421 PRK13634 cbiO cobalt transport 99.3 1.3E-12 2.9E-17 113.9 5.5 41 242-282 20-60 (290)
422 COG0396 sufC Cysteine desulfur 99.3 9.5E-13 2.1E-17 107.3 4.1 39 242-280 17-55 (251)
423 PRK14267 phosphate ABC transpo 99.3 1.3E-12 2.8E-17 111.9 5.1 41 242-282 17-57 (253)
424 PRK14273 phosphate ABC transpo 99.3 1.3E-12 2.8E-17 111.9 5.1 41 242-282 20-60 (254)
425 TIGR02324 CP_lyasePhnL phospho 99.3 1.4E-12 2.9E-17 109.6 5.1 40 243-282 22-61 (224)
426 PRK15056 manganese/iron transp 99.3 1.5E-12 3.2E-17 112.7 5.4 41 242-282 20-60 (272)
427 PRK13647 cbiO cobalt transport 99.3 1.5E-12 3.3E-17 112.6 5.5 41 242-282 18-58 (274)
428 PRK13643 cbiO cobalt transport 99.3 1.5E-12 3.2E-17 113.5 5.4 40 243-282 20-59 (288)
429 PRK11300 livG leucine/isoleuci 99.3 1.4E-12 3E-17 111.8 5.1 41 242-282 18-58 (255)
430 TIGR02323 CP_lyasePhnK phospho 99.3 1.5E-12 3.2E-17 111.5 5.2 41 242-282 16-56 (253)
431 PRK09536 btuD corrinoid ABC tr 99.3 1.5E-12 3.1E-17 117.9 5.4 42 241-282 15-56 (402)
432 PRK13650 cbiO cobalt transport 99.3 1.6E-12 3.4E-17 112.8 5.4 40 243-282 21-60 (279)
433 cd03271 ABC_UvrA_II The excisi 99.3 9.1E-13 2E-17 112.4 3.8 110 38-151 118-261 (261)
434 PRK14235 phosphate transporter 99.3 1.5E-12 3.2E-17 112.4 5.1 40 242-281 32-71 (267)
435 cd03246 ABCC_Protease_Secretio 99.3 1.9E-12 4.2E-17 104.4 5.4 41 242-282 15-55 (173)
436 PRK14268 phosphate ABC transpo 99.3 1.7E-12 3.6E-17 111.5 5.3 40 242-281 25-64 (258)
437 PRK13649 cbiO cobalt transport 99.3 1.7E-12 3.7E-17 112.8 5.3 40 243-282 21-60 (280)
438 PRK14237 phosphate transporter 99.3 1.7E-12 3.7E-17 112.0 5.2 40 242-281 33-72 (267)
439 PRK13652 cbiO cobalt transport 99.3 1.8E-12 3.8E-17 112.4 5.4 41 242-282 17-57 (277)
440 PRK11153 metN DL-methionine tr 99.3 1.8E-12 3.8E-17 115.6 5.4 41 242-282 18-58 (343)
441 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.3 1.8E-12 3.9E-17 109.9 5.3 41 242-282 16-56 (238)
442 PRK15112 antimicrobial peptide 99.3 1.8E-12 3.9E-17 111.8 5.3 41 242-282 26-66 (267)
443 PRK14247 phosphate ABC transpo 99.3 1.7E-12 3.6E-17 111.0 5.0 40 242-281 16-55 (250)
444 TIGR02769 nickel_nikE nickel i 99.3 1.7E-12 3.8E-17 111.8 5.1 41 242-282 24-64 (265)
445 COG1127 Ttg2A ABC-type transpo 99.3 1.8E-12 3.9E-17 106.4 4.8 43 240-282 19-61 (263)
446 PRK10253 iron-enterobactin tra 99.3 1.7E-12 3.7E-17 111.9 4.9 41 242-282 20-60 (265)
447 PRK14272 phosphate ABC transpo 99.3 1.8E-12 4E-17 110.8 5.0 41 242-282 17-57 (252)
448 PRK09984 phosphonate/organopho 99.3 1.9E-12 4.1E-17 111.4 5.1 41 242-282 17-57 (262)
449 cd03233 ABC_PDR_domain1 The pl 99.3 1.9E-12 4.2E-17 107.0 5.0 40 242-281 20-59 (202)
450 PRK13640 cbiO cobalt transport 99.3 2E-12 4.4E-17 112.3 5.4 41 242-282 20-60 (282)
451 PRK14240 phosphate transporter 99.3 1.9E-12 4.1E-17 110.6 5.0 39 242-280 16-54 (250)
452 COG1124 DppF ABC-type dipeptid 99.3 2.3E-12 5E-17 106.0 5.2 41 243-283 21-61 (252)
453 PRK13635 cbiO cobalt transport 99.3 2.2E-12 4.8E-17 111.9 5.4 41 242-282 20-60 (279)
454 PRK13633 cobalt transporter AT 99.3 2.2E-12 4.8E-17 112.0 5.3 41 242-282 23-63 (280)
455 PRK13645 cbiO cobalt transport 99.3 2.3E-12 5.1E-17 112.4 5.5 40 243-282 25-64 (289)
456 PRK14274 phosphate ABC transpo 99.3 2E-12 4.4E-17 111.0 5.0 39 242-280 25-63 (259)
457 PRK10744 pstB phosphate transp 99.3 2E-12 4.4E-17 111.1 4.9 39 242-280 26-64 (260)
458 PRK14270 phosphate ABC transpo 99.3 2.2E-12 4.8E-17 110.3 5.0 40 242-281 17-56 (251)
459 PRK14259 phosphate ABC transpo 99.3 2.1E-12 4.5E-17 111.5 4.9 40 242-281 26-65 (269)
460 PRK14253 phosphate ABC transpo 99.3 2.1E-12 4.5E-17 110.3 4.9 41 242-282 16-56 (249)
461 cd03250 ABCC_MRP_domain1 Domai 99.3 2.6E-12 5.5E-17 106.4 5.3 40 243-282 19-58 (204)
462 PRK11000 maltose/maltodextrin 99.3 2.4E-12 5.2E-17 115.8 5.4 41 242-282 16-56 (369)
463 PRK10619 histidine/lysine/argi 99.3 2.6E-12 5.7E-17 110.2 5.4 41 242-282 18-58 (257)
464 PRK14249 phosphate ABC transpo 99.3 2.5E-12 5.5E-17 109.9 5.2 41 242-282 17-57 (251)
465 TIGR02314 ABC_MetN D-methionin 99.3 2.5E-12 5.4E-17 114.2 5.3 41 242-282 18-58 (343)
466 PRK14256 phosphate ABC transpo 99.3 2.3E-12 4.9E-17 110.3 4.9 39 242-280 17-55 (252)
467 PRK13631 cbiO cobalt transport 99.3 2.7E-12 5.9E-17 113.2 5.5 40 243-282 40-79 (320)
468 PRK14261 phosphate ABC transpo 99.3 2.6E-12 5.5E-17 110.0 5.2 40 242-281 19-58 (253)
469 PRK13546 teichoic acids export 99.3 2.6E-12 5.7E-17 110.4 5.2 41 242-282 37-77 (264)
470 PRK13648 cbiO cobalt transport 99.3 2.8E-12 6E-17 110.8 5.4 40 243-282 23-62 (269)
471 PRK14242 phosphate transporter 99.3 2.3E-12 5E-17 110.3 4.9 39 242-280 19-57 (253)
472 cd03254 ABCC_Glucan_exporter_l 99.3 2.6E-12 5.7E-17 108.3 5.1 41 242-282 16-56 (229)
473 PRK14262 phosphate ABC transpo 99.3 2.6E-12 5.7E-17 109.8 5.1 40 242-281 16-55 (250)
474 PRK13636 cbiO cobalt transport 99.3 3E-12 6.5E-17 111.3 5.5 41 242-282 19-59 (283)
475 cd03244 ABCC_MRP_domain2 Domai 99.3 2.9E-12 6.4E-17 107.4 5.2 41 242-282 17-57 (221)
476 PRK14260 phosphate ABC transpo 99.3 2.6E-12 5.7E-17 110.3 5.0 40 242-281 20-59 (259)
477 PRK14239 phosphate transporter 99.3 2.9E-12 6.3E-17 109.6 5.2 39 242-280 18-56 (252)
478 PRK14265 phosphate ABC transpo 99.3 3E-12 6.4E-17 110.8 5.2 40 242-281 33-72 (274)
479 COG1122 CbiO ABC-type cobalt t 99.3 3.4E-12 7.4E-17 107.1 5.3 41 242-282 17-57 (235)
480 cd03245 ABCC_bacteriocin_expor 99.3 3.3E-12 7.1E-17 107.0 5.2 41 242-282 17-57 (220)
481 PRK14251 phosphate ABC transpo 99.3 3E-12 6.4E-17 109.5 5.1 39 242-280 17-55 (251)
482 cd03248 ABCC_TAP TAP, the Tran 99.3 3.3E-12 7.2E-17 107.4 5.2 40 243-282 28-67 (226)
483 cd03232 ABC_PDR_domain2 The pl 99.3 3.4E-12 7.5E-17 104.6 5.1 39 242-280 20-58 (192)
484 PRK14271 phosphate ABC transpo 99.3 3.2E-12 7E-17 110.7 5.2 41 241-281 33-73 (276)
485 PRK14243 phosphate transporter 99.3 2.7E-12 5.9E-17 110.5 4.7 40 242-281 23-62 (264)
486 PRK11650 ugpC glycerol-3-phosp 99.3 3.5E-12 7.6E-17 114.1 5.5 41 242-282 17-57 (356)
487 PRK14246 phosphate ABC transpo 99.3 3.6E-12 7.9E-17 109.3 5.3 42 241-282 22-63 (257)
488 cd03234 ABCG_White The White s 99.3 3.3E-12 7.1E-17 107.5 4.9 39 242-280 20-58 (226)
489 PRK10418 nikD nickel transport 99.3 3.5E-12 7.6E-17 109.2 5.1 40 242-281 16-55 (254)
490 TIGR03265 PhnT2 putative 2-ami 99.3 3.9E-12 8.5E-17 113.6 5.5 41 242-282 17-57 (353)
491 PRK11432 fbpC ferric transport 99.3 3.8E-12 8.3E-17 113.5 5.4 41 242-282 19-59 (351)
492 cd00267 ABC_ATPase ABC (ATP-bi 99.3 4.8E-12 1E-16 100.4 5.4 41 242-282 12-52 (157)
493 PRK13632 cbiO cobalt transport 99.3 4.1E-12 8.8E-17 109.8 5.4 41 242-282 22-62 (271)
494 PRK14248 phosphate ABC transpo 99.3 3.5E-12 7.5E-17 110.1 4.9 39 242-280 34-72 (268)
495 cd03213 ABCG_EPDR ABCG transpo 99.3 4E-12 8.8E-17 104.4 5.1 41 242-282 22-64 (194)
496 PRK14238 phosphate transporter 99.3 3.8E-12 8.3E-17 110.0 5.1 39 242-280 37-75 (271)
497 TIGR02982 heterocyst_DevA ABC 99.3 4.5E-12 9.7E-17 106.2 5.3 41 242-282 18-58 (220)
498 PRK14252 phosphate ABC transpo 99.3 4.3E-12 9.2E-17 109.4 5.2 40 242-281 29-68 (265)
499 TIGR03258 PhnT 2-aminoethylpho 99.3 4.3E-12 9.4E-17 113.6 5.4 41 242-282 18-58 (362)
500 COG4107 PhnK ABC-type phosphon 99.3 8.2E-12 1.8E-16 97.6 6.2 153 1-155 45-240 (258)
No 1
>KOG0061|consensus
Probab=100.00 E-value=1.1e-39 Score=308.11 Aligned_cols=177 Identities=43% Similarity=0.632 Sum_probs=166.5
Q ss_pred Cchhhhh-cCCCCC--CceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHH
Q psy8953 1 MSIELNV-QSIRLT--GSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQ 77 (286)
Q Consensus 1 ~stll~~-~g~~~~--~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~ 77 (286)
||||||+ ||+.++ .++|+|++||++... +.+++.+|||+|||.+++++||+|++.|+|++|+|...+.+|+++|
T Consensus 69 KtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~---~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~ 145 (613)
T KOG0061|consen 69 KTTLLNALAGRLNGGLKLSGEILLNGRPRDS---RSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRER 145 (613)
T ss_pred HHHHHHHHhccccCCCcceEEEEECCccCch---hhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 8999999 999875 599999999988776 7899999999999999999999999999999999998999999999
Q ss_pred Hh-------hh-hhhccc---------CCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEE
Q psy8953 78 VS-------LE-LWNNFC---------KKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVA 121 (286)
Q Consensus 78 v~-------l~-~~~~~~---------gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~ 121 (286)
|+ |. |+|+++ ||||| ||||||+.++.+++++|++++++|+|||+
T Consensus 146 V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~ 225 (613)
T KOG0061|consen 146 VEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVIC 225 (613)
T ss_pred HHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEE
Confidence 99 44 777765 68999 99999999999999999999999999999
Q ss_pred EEcCCCHHHHHHhhhHhhhcCCeeecccChhcHHHHHHhCCCCCCCCCCCCCccccccC
Q psy8953 122 TIHTPSALLFEKFDSLYALAKGHCIYRGSISRLVPHLASLGLPCPAYHNPADFPNLAKQ 180 (286)
Q Consensus 122 ~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~g~~~p~~~~~~~~~~~~~~ 180 (286)
++|||+..++++||++++|.+|+++|.|++.++.++|...|++||.+.||+|+..+...
T Consensus 226 tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~~ff~~~G~~~P~~~Npadf~l~l~s 284 (613)
T KOG0061|consen 226 TIHQPSSELFELFDKLLLLSEGEVVYSGSPRELLEFFSSLGFPCPELENPADFLLDLLS 284 (613)
T ss_pred EEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHHHHHHhCCCCCCCcCChHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999877544
No 2
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.7e-36 Score=278.67 Aligned_cols=234 Identities=17% Similarity=0.208 Sum_probs=164.8
Q ss_pred Cchhhhh-cCCCCC-CceeEEEECCeecCchhhh-cccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHH
Q psy8953 1 MSIELNV-QSIRLT-GSSGKILVNGQERKSACIE-QFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQ 77 (286)
Q Consensus 1 ~stll~~-~g~~~~-~~~G~i~~~g~~~~~~~~~-~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~ 77 (286)
||||+++ +|..+. ..+|+|+++|+++...+.. .+++.+|||+|++.+++.+||+|++.|+++.+.....+.++..++
T Consensus 44 KSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ 123 (506)
T PRK13549 44 KSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLR 123 (506)
T ss_pred HHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHH
Confidence 8999999 997654 3799999999988643222 234679999999999999999999999876421111233333333
Q ss_pred Hh-------hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcCC
Q psy8953 78 VS-------LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVATIHTP 126 (286)
Q Consensus 78 v~-------l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~~ 126 (286)
+. +. ...++|||||| ||++||+.++.+++++|++++++|.|||+++|++
T Consensus 124 ~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~ 203 (506)
T PRK13549 124 AQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKL 203 (506)
T ss_pred HHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcH
Confidence 33 21 34678999999 9999999999999999999987799999999998
Q ss_pred CHHHHHHhhhHhhhcCCeeecccChhcHHH--HHHh-CCCCCCCCCCCCCccccccCCceeeeeccCchhhHHHHHHHHH
Q psy8953 127 SALLFEKFDSLYALAKGHCIYRGSISRLVP--HLAS-LGLPCPAYHNPADFPNLAKQGRTVVATIHTPSALLFEKFDSLY 203 (286)
Q Consensus 127 ~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~--~~~~-~g~~~p~~~~~~~~~~~~~~g~tii~~~h~p~~~l~~~~d~~~ 203 (286)
+ .+...+|++++|++|++++.|+++++.. .... .+...+.. .+.. ..+
T Consensus 204 ~-~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-----------~~~------------ 254 (506)
T PRK13549 204 N-EVKAISDTICVIRDGRHIGTRPAAGMTEDDIITMMVGRELTAL-----YPRE-----------PHT------------ 254 (506)
T ss_pred H-HHHHhcCEEEEEECCEEeeecccccCCHHHHHHHhhCcCcccc-----cccc-----------ccC------------
Confidence 6 4667899999999999999998876532 1111 12110000 0000 000
Q ss_pred HHhcCcceecCCccccccccccCCCCCCCCCCCCcccccccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCC
Q psy8953 204 ALAKGHCIYRGSISRLVPHLASLGLPCPAYHNPADFLNKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYL 281 (286)
Q Consensus 204 ~l~~g~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~ 281 (286)
.......++++... |... ..+.+++++||+|++||+++|+|+||||||||+|+|+|++++
T Consensus 255 ------------~~~~~l~~~~l~~~---~~~~---~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~ 314 (506)
T PRK13549 255 ------------IGEVILEVRNLTAW---DPVN---PHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPG 314 (506)
T ss_pred ------------CCCceEEEecCccc---cccc---cccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCC
Confidence 00001112222211 1000 023589999999999999999999999999999999999874
No 3
>KOG0065|consensus
Probab=100.00 E-value=1.6e-35 Score=287.00 Aligned_cols=177 Identities=32% Similarity=0.532 Sum_probs=160.4
Q ss_pred Cchhhhh-cCCCCCC-ceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHH
Q psy8953 1 MSIELNV-QSIRLTG-SSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQV 78 (286)
Q Consensus 1 ~stll~~-~g~~~~~-~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v 78 (286)
||||||| |||+.++ ++|+|+|||.+.+. ..|+|.+|||.|+|.+.+.+||+|.|.|+|.||+|..++.+|+.+.|
T Consensus 830 KTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q---~tF~R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yV 906 (1391)
T KOG0065|consen 830 KTTLLDVLAGRKTGGYIEGDILISGFPKDQ---ETFARVSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYV 906 (1391)
T ss_pred hHHHHHHHhcCcccceEEeEEEECCeeCch---hhhccccceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHH
Confidence 8999999 9997665 99999999999986 78999999999999999999999999999999999999999998888
Q ss_pred h-------hh-hhhccc--------CCccc--------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEE
Q psy8953 79 S-------LE-LWNNFC--------KKKKK--------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVAT 122 (286)
Q Consensus 79 ~-------l~-~~~~~~--------gG~kq--------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~ 122 (286)
+ |+ +.+.++ .+||| ||||||+.++..+++++++|+..|+||+|+
T Consensus 907 e~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCT 986 (1391)
T KOG0065|consen 907 EEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCT 986 (1391)
T ss_pred HHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEE
Confidence 8 33 566655 45777 999999999999999999999999999999
Q ss_pred EcCCCHHHHHHhhhHhhhc-CCeeecccChhcH----HHHHHhCC-CCCCCCCCCCCccccccC
Q psy8953 123 IHTPSALLFEKFDSLYALA-KGHCIYRGSISRL----VPHLASLG-LPCPAYHNPADFPNLAKQ 180 (286)
Q Consensus 123 ~h~~~~~~~~~~d~v~~l~-~G~i~~~g~~~~~----~~~~~~~g-~~~p~~~~~~~~~~~~~~ 180 (286)
+|||+..+++.||++++|+ .|+.+|.|+..+. ++||++.| ..||...||+++.+++..
T Consensus 987 IHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s~~li~YFes~~~~~~~~~~NPA~~mLevi~ 1050 (1391)
T KOG0065|consen 987 IHQPSIDIFEAFDELLLLKRGGQTVYFGPLGENSSKLIEYFESIGGVKCISDENPAEWMLEVIG 1050 (1391)
T ss_pred ecCCcHHHHHHHhHHHHHhcCCeEEEecCcccccHHHHHHHHhcCCccCCCCCChHHHHHhhcc
Confidence 9999999999999999998 5999999998664 56999885 899999999999987643
No 4
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=3.3e-35 Score=274.46 Aligned_cols=226 Identities=19% Similarity=0.259 Sum_probs=161.1
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhh-cccceeeEEecCcccCCCCCHHHHHHHHHhcCCC-CCCCHHHHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIE-QFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLG-FKVSTQEKKDQ 77 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~-~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~-~~~~~~~~~~~ 77 (286)
|||||++ +|..+. .+|+|.++|+++...+.. ..++.+|||+|++.+++.+||+|+++|+++.... ...+.++.+++
T Consensus 43 KSTLl~~l~G~~~p-~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~ 121 (501)
T PRK10762 43 KSTMMKVLTGIYTR-DAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAE 121 (501)
T ss_pred HHHHHHHHhCCCCC-CCcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHH
Confidence 8999999 997544 689999999987532111 2346799999999999999999999998653210 11223333333
Q ss_pred Hh-------hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcCC
Q psy8953 78 VS-------LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVATIHTP 126 (286)
Q Consensus 78 v~-------l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~~ 126 (286)
+. +. ...++|||||| ||++||+.++.+++++|++++++|.|||+++|++
T Consensus 122 ~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~ 201 (501)
T PRK10762 122 ADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRL 201 (501)
T ss_pred HHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 33 22 34679999999 9999999999999999999987899999999998
Q ss_pred CHHHHHHhhhHhhhcCCeeecccChhcHHHH-H-Hh-CCCCCCCCCCCCCccccccCCceeeeeccCchhhHHHHHHHHH
Q psy8953 127 SALLFEKFDSLYALAKGHCIYRGSISRLVPH-L-AS-LGLPCPAYHNPADFPNLAKQGRTVVATIHTPSALLFEKFDSLY 203 (286)
Q Consensus 127 ~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~-~-~~-~g~~~p~~~~~~~~~~~~~~g~tii~~~h~p~~~l~~~~d~~~ 203 (286)
+ .+..++|++++|++|+++..|+++++... + +. .+-..+. . .|..
T Consensus 202 ~-~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~--~-------------------~~~~---------- 249 (501)
T PRK10762 202 K-EIFEICDDVTVFRDGQFIAEREVADLTEDSLIEMMVGRKLED--Q-------------------YPRL---------- 249 (501)
T ss_pred H-HHHHhCCEEEEEeCCEEEEecCcCcCCHHHHHHHhcCCCccc--c-------------------cccc----------
Confidence 6 46688999999999999999987765321 1 10 0100000 0 0000
Q ss_pred HHhcCcceecCCccccccccccCCCCCCCCCCCCcccccccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 204 ALAKGHCIYRGSISRLVPHLASLGLPCPAYHNPADFLNKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 204 ~l~~g~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
..........++++. ..+++++||+|++||+++|+|+||||||||+|+|+|+++++
T Consensus 250 ---------~~~~~~~~l~~~~l~--------------~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~ 305 (501)
T PRK10762 250 ---------DKAPGEVRLKVDNLS--------------GPGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRT 305 (501)
T ss_pred ---------ccCCCCcEEEEeCcc--------------cCCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCC
Confidence 000000001111111 23699999999999999999999999999999999999874
No 5
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6e-35 Score=273.38 Aligned_cols=233 Identities=18% Similarity=0.203 Sum_probs=163.0
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhc-ccceeeEEecCcccCCCCCHHHHHHHHHhcC-CCCC---CCHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQ-FLKLSCYIQQDDALRPKLTVTEAMMIASHLK-LGFK---VSTQEK 74 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~-~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~-~~~~---~~~~~~ 74 (286)
|||||++ +|..+. .+|+|+++|+++...+... .++.+|||+|++.+++.+||+|++.|++... ...+ .+.++.
T Consensus 44 KSTLl~~i~Gl~~p-~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~ 122 (510)
T PRK09700 44 KSTLMKVLSGIHEP-TKGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREM 122 (510)
T ss_pred HHHHHHHHcCCcCC-CccEEEECCEECCCCCHHHHHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHH
Confidence 8999999 997643 6899999999886432222 2457999999999999999999999875311 0011 123333
Q ss_pred HHHHh-------hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEEE
Q psy8953 75 KDQVS-------LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVATI 123 (286)
Q Consensus 75 ~~~v~-------l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~ 123 (286)
.+++. +. ...++|||||| ||++||+.++..++++|++++++|+|||+++
T Consensus 123 ~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivs 202 (510)
T PRK09700 123 RVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYIS 202 (510)
T ss_pred HHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 33333 21 34678999999 9999999999999999999988899999999
Q ss_pred cCCCHHHHHHhhhHhhhcCCeeecccChhcHHH--HHHhC-CCCCCCCCCCCCccccccCCceeeeeccCchhhHHHHHH
Q psy8953 124 HTPSALLFEKFDSLYALAKGHCIYRGSISRLVP--HLASL-GLPCPAYHNPADFPNLAKQGRTVVATIHTPSALLFEKFD 200 (286)
Q Consensus 124 h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~--~~~~~-g~~~p~~~~~~~~~~~~~~g~tii~~~h~p~~~l~~~~d 200 (286)
|+++ .+..++|++++|++|++++.|+++++.. ....+ +.... ..... .+ +.
T Consensus 203 Hd~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~-----~~~~~-----------~~-~~-------- 256 (510)
T PRK09700 203 HKLA-EIRRICDRYTVMKDGSSVCSGMVSDVSNDDIVRLMVGRELQ-----NRFNA-----------MK-EN-------- 256 (510)
T ss_pred CCHH-HHHHhCCEEEEEECCEEeeecchhhCCHHHHHHHhcCCCcc-----ccccc-----------cc-cc--------
Confidence 9986 4668899999999999999999877532 11111 10000 00000 00 00
Q ss_pred HHHHHhcCcceecCCccccccccccCCCCCCCCCCCCcccccccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCC
Q psy8953 201 SLYALAKGHCIYRGSISRLVPHLASLGLPCPAYHNPADFLNKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTY 280 (286)
Q Consensus 201 ~~~~l~~g~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~ 280 (286)
.. .........++++... | ..+++++||+|++||+++|+|+||||||||+|+|+|+++
T Consensus 257 --------~~---~~~~~~~l~~~~l~~~---------~--~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~ 314 (510)
T PRK09700 257 --------VS---NLAHETVFEVRNVTSR---------D--RKKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDK 314 (510)
T ss_pred --------cc---cCCCCcEEEEeCcccc---------C--CCcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc
Confidence 00 0000011122222211 1 238999999999999999999999999999999999998
Q ss_pred CC
Q psy8953 281 LN 282 (286)
Q Consensus 281 ~~ 282 (286)
++
T Consensus 315 p~ 316 (510)
T PRK09700 315 RA 316 (510)
T ss_pred CC
Confidence 74
No 6
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=8.8e-35 Score=271.70 Aligned_cols=234 Identities=15% Similarity=0.220 Sum_probs=163.0
Q ss_pred Cchhhhh-cCCCCC-CceeEEEECCeecCchhhhc-ccceeeEEecCcccCCCCCHHHHHHHHHhcCCCC-CCCHHHHHH
Q psy8953 1 MSIELNV-QSIRLT-GSSGKILVNGQERKSACIEQ-FLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGF-KVSTQEKKD 76 (286)
Q Consensus 1 ~stll~~-~g~~~~-~~~G~i~~~g~~~~~~~~~~-~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~-~~~~~~~~~ 76 (286)
|||||++ +|..+. ..+|+|.++|+++...+... .++.+|||+|++.+++.+||+|++.|+.++.... ..+.++..+
T Consensus 40 KSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~ 119 (500)
T TIGR02633 40 KSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYL 119 (500)
T ss_pred HHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHH
Confidence 8999999 997654 36999999999886422222 3467999999999999999999999987542111 123333333
Q ss_pred HHh-------hh------hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEEEc
Q psy8953 77 QVS-------LE------LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVATIH 124 (286)
Q Consensus 77 ~v~-------l~------~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h 124 (286)
++. +. ...++|||||| ||++||+.++..+.++|++++++|.|||+++|
T Consensus 120 ~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitH 199 (500)
T TIGR02633 120 RAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISH 199 (500)
T ss_pred HHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 333 21 24568999999 99999999999999999999888999999999
Q ss_pred CCCHHHHHHhhhHhhhcCCeeecccChhcHHH--HHHhC-CCCCCCCCCCCCccccccCCceeeeeccCchhhHHHHHHH
Q psy8953 125 TPSALLFEKFDSLYALAKGHCIYRGSISRLVP--HLASL-GLPCPAYHNPADFPNLAKQGRTVVATIHTPSALLFEKFDS 201 (286)
Q Consensus 125 ~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~--~~~~~-g~~~p~~~~~~~~~~~~~~g~tii~~~h~p~~~l~~~~d~ 201 (286)
+++ .+..++|++++|++|++++.+++++... ....+ +...+.. .+.. ..+
T Consensus 200 d~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-----------~~~---------- 252 (500)
T TIGR02633 200 KLN-EVKAVCDTICVIRDGQHVATKDMSTMSEDDIITMMVGREITSL-----YPHE-----------PHE---------- 252 (500)
T ss_pred cHH-HHHHhCCEEEEEeCCeEeeecCcccCCHHHHHHHHhCcccccc-----cccc-----------ccC----------
Confidence 986 4668899999999999999888765421 11111 1110000 0000 000
Q ss_pred HHHHhcCcceecCCccccccccccCCCCCCCCCCCCcccccccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCC
Q psy8953 202 LYALAKGHCIYRGSISRLVPHLASLGLPCPAYHNPADFLNKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYL 281 (286)
Q Consensus 202 ~~~l~~g~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~ 281 (286)
.......++++... |... ..+.+++++||+|++||+++|+|+||||||||+|+|+|++++
T Consensus 253 --------------~~~~~l~~~~l~~~---~~~~---~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p 312 (500)
T TIGR02633 253 --------------IGDVILEARNLTCW---DVIN---PHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPG 312 (500)
T ss_pred --------------CCCceEEEeCCccc---cccc---ccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCC
Confidence 00001112222211 1000 023589999999999999999999999999999999999985
No 7
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-34 Score=270.08 Aligned_cols=229 Identities=17% Similarity=0.255 Sum_probs=161.8
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchh-hhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSAC-IEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQV 78 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~-~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v 78 (286)
|||||++ +|+.+. .+|+|.++|+++...+ ...+++.+|||+|++.+++.+||+|+++|+.....+...+.++..+++
T Consensus 37 KSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~ 115 (491)
T PRK10982 37 KSTLLKCLFGIYQK-DSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDT 115 (491)
T ss_pred HHHHHHHHcCCCCC-CceEEEECCEECCCCCHHHHHhCCEEEEecccccccCCCHHHHhhcccccccccccCHHHHHHHH
Confidence 8999999 997543 6899999999875321 123456799999999899999999999987531001111233333333
Q ss_pred h-------hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcCCC
Q psy8953 79 S-------LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVATIHTPS 127 (286)
Q Consensus 79 ~-------l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~~~ 127 (286)
. +. ...++|||||| ||++||+.++..++++|+++++.|.|||+++|+++
T Consensus 116 ~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~ 195 (491)
T PRK10982 116 KAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKME 195 (491)
T ss_pred HHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH
Confidence 3 21 34679999999 99999999999999999999888999999999986
Q ss_pred HHHHHHhhhHhhhcCCeeecccChhcHHH--HHHhC-CCCCCCCCCCCCccccccCCceeeeeccCchhhHHHHHHHHHH
Q psy8953 128 ALLFEKFDSLYALAKGHCIYRGSISRLVP--HLASL-GLPCPAYHNPADFPNLAKQGRTVVATIHTPSALLFEKFDSLYA 204 (286)
Q Consensus 128 ~~~~~~~d~v~~l~~G~i~~~g~~~~~~~--~~~~~-g~~~p~~~~~~~~~~~~~~g~tii~~~h~p~~~l~~~~d~~~~ 204 (286)
.+..++|++++|++|+++..|++++... ....+ +-.... .++. +
T Consensus 196 -~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~--------------~------------- 242 (491)
T PRK10982 196 -EIFQLCDEITILRDGQWIATQPLAGLTMDKIIAMMVGRSLTQ-----RFPD--------------K------------- 242 (491)
T ss_pred -HHHHhCCEEEEEECCEEEeecChhhCCHHHHHHHHhCCCccc-----cccc--------------c-------------
Confidence 4668899999999999999998766421 11111 100000 0000 0
Q ss_pred HhcCcceecCCccccccccccCCCCCCCCCCCCcccccccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 205 LAKGHCIYRGSISRLVPHLASLGLPCPAYHNPADFLNKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 205 l~~g~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
. . ........++++... .+.+++++||+|++||+++|+|+||||||||+|+|+|+++++
T Consensus 243 --~-~-----~~~~~~i~~~~l~~~-----------~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~ 301 (491)
T PRK10982 243 --E-N-----KPGEVILEVRNLTSL-----------RQPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKS 301 (491)
T ss_pred --c-C-----CCCCcEEEEeCcccc-----------cCcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCC
Confidence 0 0 000001122222211 134899999999999999999999999999999999999874
No 8
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=2.7e-34 Score=269.57 Aligned_cols=231 Identities=20% Similarity=0.233 Sum_probs=161.0
Q ss_pred Cchhhhh-cCCCC-CCceeEEEEC-----------------------CeecC----------chhhhcccceeeEEecC-
Q psy8953 1 MSIELNV-QSIRL-TGSSGKILVN-----------------------GQERK----------SACIEQFLKLSCYIQQD- 44 (286)
Q Consensus 1 ~stll~~-~g~~~-~~~~G~i~~~-----------------------g~~~~----------~~~~~~~~~~~g~v~Q~- 44 (286)
|||||++ +|..+ ...+|+|.++ |.++. ......+++.+|||+|+
T Consensus 39 KSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~ 118 (520)
T TIGR03269 39 KSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRT 118 (520)
T ss_pred HHHHHHHHhhcccCCCCceEEEEeccccccccccccccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccc
Confidence 8999999 99753 4478999997 22221 00112345679999998
Q ss_pred cccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh-------hh-----hhhcccCCccc-------------------c
Q psy8953 45 DALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS-------LE-----LWNNFCKKKKK-------------------K 93 (286)
Q Consensus 45 ~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~-------l~-----~~~~~~gG~kq-------------------p 93 (286)
+.+++.+||+|+++|.++.. ..+.++.++++. +. ...++|||||| |
T Consensus 119 ~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEP 195 (520)
T TIGR03269 119 FALYGDDTVLDNVLEALEEI---GYEGKEAVGRAVDLIEMVQLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEP 195 (520)
T ss_pred cccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCC
Confidence 56889999999999987632 233445444444 22 45679999999 9
Q ss_pred CCCcchHHHHHHHHHHHHHHh-CCCEEEEEEcCCCHHHHHHhhhHhhhcCCeeecccChhcHHHHHHhCCCCCCCCCCCC
Q psy8953 94 KRGLDSSSCSQCVSLLANLAK-QGRTVVATIHTPSALLFEKFDSLYALAKGHCIYRGSISRLVPHLASLGLPCPAYHNPA 172 (286)
Q Consensus 94 tsgLD~~~~~~~~~~l~~l~~-~g~tii~~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~g~~~p~~~~~~ 172 (286)
|++||+.++..++++|+++++ .|.|||+++|+++. +...+|++++|++|++++.|+++++....... . +....+.
T Consensus 196 t~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~-~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~-~--~~~~~~~ 271 (520)
T TIGR03269 196 TGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEV-IEDLSDKAIWLENGEIKEEGTPDEVVAVFMEG-V--SEVEKEC 271 (520)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHH-HHHhcCEEEEEeCCEEeeecCHHHHHHHHHhh-c--hhhcccc
Confidence 999999999999999999976 49999999999864 56889999999999999999888775532110 0 0000000
Q ss_pred CccccccCCceeeeeccCchhhHHHHHHHHHHHhcCcceecCCccccccccccCCCCCCCCCCCCcccccccceeeeeEE
Q psy8953 173 DFPNLAKQGRTVVATIHTPSALLFEKFDSLYALAKGHCIYRGSISRLVPHLASLGLPCPAYHNPADFLNKEILHGISGEF 252 (286)
Q Consensus 173 ~~~~~~~~g~tii~~~h~p~~~l~~~~d~~~~l~~g~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~il~~~~l~i 252 (286)
. .+ .......++++... |.... -..+.+|+++||+|
T Consensus 272 ~----------------~~------------------------~~~~~l~~~~l~~~---~~~~~-~~~~~il~~is~~i 307 (520)
T TIGR03269 272 E----------------VE------------------------VGEPIIKVRNVSKR---YISVD-RGVVKAVDNVSLEV 307 (520)
T ss_pred c----------------cC------------------------CCCceEEEeccEEE---eccCC-CCCceEEeeEEEEE
Confidence 0 00 00001111222111 10000 00135899999999
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 253 KAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 253 ~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
++||+++|+|+||||||||+|+|+|+++++
T Consensus 308 ~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~ 337 (520)
T TIGR03269 308 KEGEIFGIVGTSGAGKTTLSKIIAGVLEPT 337 (520)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 999999999999999999999999999864
No 9
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-34 Score=270.13 Aligned_cols=227 Identities=20% Similarity=0.276 Sum_probs=157.5
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchh-hhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSAC-IEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQV 78 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~-~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v 78 (286)
|||||++ +|..+. .+|+|.++|+++...+ ...+++.+|||+|++.+++.+||.|++.|+.........+..+.++++
T Consensus 43 KSTLl~~l~Gl~~p-~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~ 121 (501)
T PRK11288 43 KSTLLKILSGNYQP-DAGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEA 121 (501)
T ss_pred HHHHHHHHhCCCCC-CCCEEEECCEECCCCCHHHHHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHH
Confidence 8999999 997543 6899999999875321 123467899999999999999999999997531110112334444443
Q ss_pred h-------hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcCCC
Q psy8953 79 S-------LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVATIHTPS 127 (286)
Q Consensus 79 ~-------l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~~~ 127 (286)
. +. ....+|||||| ||++||+.++..++++|++++++|.|||+++|+++
T Consensus 122 ~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~ 201 (501)
T PRK11288 122 REQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRME 201 (501)
T ss_pred HHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 3 21 34678999999 99999999999999999999878999999999986
Q ss_pred HHHHHHhhhHhhhcCCeeecccChhcHH---HHHHhC-CCCCCCCCCCCCccccccCCceeeeeccCchhhHHHHHHHHH
Q psy8953 128 ALLFEKFDSLYALAKGHCIYRGSISRLV---PHLASL-GLPCPAYHNPADFPNLAKQGRTVVATIHTPSALLFEKFDSLY 203 (286)
Q Consensus 128 ~~~~~~~d~v~~l~~G~i~~~g~~~~~~---~~~~~~-g~~~p~~~~~~~~~~~~~~g~tii~~~h~p~~~l~~~~d~~~ 203 (286)
.+..++|++++|++|+++..++..... ...+.. +-.. .... . ..+.
T Consensus 202 -~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~~~------~~~~---~---------~~~~----------- 251 (501)
T PRK11288 202 -EIFALCDAITVFKDGRYVATFDDMAQVDRDQLVQAMVGREI------GDIY---G---------YRPR----------- 251 (501)
T ss_pred -HHHHhCCEEEEEECCEEEeecCccccCCHHHHHHHhcCCCc------cccc---c---------cccc-----------
Confidence 466889999999999998766432110 001000 0000 0000 0 0000
Q ss_pred HHhcCcceecCCccccccccccCCCCCCCCCCCCcccccccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 204 ALAKGHCIYRGSISRLVPHLASLGLPCPAYHNPADFLNKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 204 ~l~~g~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
........+++.. .+.+++++||+|++||+++|+|+||||||||+|+|+|+++++
T Consensus 252 -----------~~~~~~l~~~~~~-------------~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~ 306 (501)
T PRK11288 252 -----------PLGEVRLRLDGLK-------------GPGLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRT 306 (501)
T ss_pred -----------CCCCcEEEEeccc-------------cCCcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCC
Confidence 0000001111111 124899999999999999999999999999999999999864
No 10
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=1.4e-34 Score=270.53 Aligned_cols=236 Identities=18% Similarity=0.226 Sum_probs=160.0
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcc-cceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQF-LKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQV 78 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~-~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v 78 (286)
|||||++ +|..+. .+|+|.++|+++...+...+ ++.+|||+|++.+++.+||.|++.|.... .....++..+.+
T Consensus 50 KSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~---~~~~~~~~~~~l 125 (510)
T PRK15439 50 KSTLMKIIAGIVPP-DSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPK---RQASMQKMKQLL 125 (510)
T ss_pred HHHHHHHHhCCCCC-CceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhccccc---chHHHHHHHHHH
Confidence 8999999 997543 68999999998754322222 35699999999999999999999997542 110111222222
Q ss_pred h---hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcCCCHHHH
Q psy8953 79 S---LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVATIHTPSALLF 131 (286)
Q Consensus 79 ~---l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~~~~~~~ 131 (286)
+ +. ....+|||||| ||++||+.++..++++|++++++|+|||+++|+++. +.
T Consensus 126 ~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~-~~ 204 (510)
T PRK15439 126 AALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPE-IR 204 (510)
T ss_pred HHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH-HH
Confidence 2 22 34678999999 999999999999999999998889999999999864 66
Q ss_pred HHhhhHhhhcCCeeecccChhcHHH--HHHhCCCCCCCCCCCCCccccccCCceeeeeccCchhhHHHHHHHHHHHhcCc
Q psy8953 132 EKFDSLYALAKGHCIYRGSISRLVP--HLASLGLPCPAYHNPADFPNLAKQGRTVVATIHTPSALLFEKFDSLYALAKGH 209 (286)
Q Consensus 132 ~~~d~v~~l~~G~i~~~g~~~~~~~--~~~~~g~~~p~~~~~~~~~~~~~~g~tii~~~h~p~~~l~~~~d~~~~l~~g~ 209 (286)
..+|++++|++|++++.|+++++.. ....+. ....... ........ ...|.
T Consensus 205 ~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~-~~~~~~~-------~~~~~~~~--~~~~~----------------- 257 (510)
T PRK15439 205 QLADRISVMRDGTIALSGKTADLSTDDIIQAIT-PAAREKS-------LSASQKLW--LELPG----------------- 257 (510)
T ss_pred HhCCEEEEEECCEEEEecChHHcCHHHHHHHHh-Ccccccc-------cccccccc--ccccc-----------------
Confidence 8899999999999999999877542 121110 0000000 00000000 00000
Q ss_pred ceecCCccccccccccCCCCCCCCCCCCcccccccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 210 CIYRGSISRLVPHLASLGLPCPAYHNPADFLNKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 210 ~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
.............++++. ..+|+++||+|++||+++|+|+||||||||+|+|+|+++++
T Consensus 258 ~~~~~~~~~~~l~~~~l~--------------~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~ 316 (510)
T PRK15439 258 NRRQQAAGAPVLTVEDLT--------------GEGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPAR 316 (510)
T ss_pred cccccCCCCceEEEeCCC--------------CCCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC
Confidence 000000000011111111 12689999999999999999999999999999999999874
No 11
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=4.3e-34 Score=259.52 Aligned_cols=246 Identities=20% Similarity=0.247 Sum_probs=170.6
Q ss_pred Cchhhhh-cCCCCCC---ceeEEEECCeecCchhhhcc----cceeeEEecCcc--cCCCCCHHHHHHHHHhcCCCCCCC
Q psy8953 1 MSIELNV-QSIRLTG---SSGKILVNGQERKSACIEQF----LKLSCYIQQDDA--LRPKLTVTEAMMIASHLKLGFKVS 70 (286)
Q Consensus 1 ~stll~~-~g~~~~~---~~G~i~~~g~~~~~~~~~~~----~~~~g~v~Q~~~--~~~~~tV~e~l~f~~~~~~~~~~~ 70 (286)
|||+.+. -|+.+.+ .+|+|.++|.++...+.+.+ .+.++||||+|. +-|-+||..-|.=..+.+.+. +
T Consensus 48 KSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~--~ 125 (539)
T COG1123 48 KSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKG--S 125 (539)
T ss_pred HHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccc--c
Confidence 8999999 9976653 79999999997754322222 489999999994 458899999999888865532 3
Q ss_pred HHHHHHHHh------------h-h-hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC-C
Q psy8953 71 TQEKKDQVS------------L-E-LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ-G 116 (286)
Q Consensus 71 ~~~~~~~v~------------l-~-~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~-g 116 (286)
.+|.++++. . . ++|.+|||||| ||+.||+..+.+++++|++|.++ |
T Consensus 126 ~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g 205 (539)
T COG1123 126 RAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELG 205 (539)
T ss_pred HHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcC
Confidence 666655544 2 2 67889999999 99999999999999999999875 9
Q ss_pred CEEEEEEcCCCHHHHHHhhhHhhhcCCeeecccChhcHHHHH-----HhCCCCCCCCCCCCCccccccCCceeeeeccCc
Q psy8953 117 RTVVATIHTPSALLFEKFDSLYALAKGHCIYRGSISRLVPHL-----ASLGLPCPAYHNPADFPNLAKQGRTVVATIHTP 191 (286)
Q Consensus 117 ~tii~~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~-----~~~g~~~p~~~~~~~~~~~~~~g~tii~~~h~p 191 (286)
+++|+++|++. .+.+++|||+||.+|+++..|++++++... ..+--..|........ .... -.+
T Consensus 206 ~a~l~ITHDl~-Vva~~aDrv~Vm~~G~iVE~G~~~~i~~~p~hpYT~~Ll~a~p~~~~~~~~------~~~~----~~~ 274 (539)
T COG1123 206 MAVLFITHDLG-VVAELADRVVVMYKGEIVETGPTEEILSNPQHPYTRGLLAAVPRLGDEKII------RLPR----RGP 274 (539)
T ss_pred cEEEEEcCCHH-HHHHhcCeEEEEECCEEEEecCHHHHHhccCCcccHHHHhhCCCccccccc------cccc----ccc
Confidence 99999999996 688999999999999999999999987521 0000000000000000 0000 000
Q ss_pred hhhHHHHHHHHHHHhcCcceecCCccccccccccCCCCCCCCCC--CCcccccccceeeeeEEeCCCEEEEEcCCCCcHH
Q psy8953 192 SALLFEKFDSLYALAKGHCIYRGSISRLVPHLASLGLPCPAYHN--PADFLNKEILHGISGEFKAGQLTAIMGPSGAGKS 269 (286)
Q Consensus 192 ~~~l~~~~d~~~~l~~g~~~~~g~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~il~~~~l~i~~Ge~~aivG~NGsGKS 269 (286)
. ..+....++++...+..... ........+++||||++++||++||||++|||||
T Consensus 275 ~-----------------------~~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKS 331 (539)
T COG1123 275 L-----------------------RAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKS 331 (539)
T ss_pred c-----------------------ccCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHH
Confidence 0 00011111111111110000 0000013489999999999999999999999999
Q ss_pred HHHHHHHcCCCCC
Q psy8953 270 TLLNILAGLTYLN 282 (286)
Q Consensus 270 TLl~~l~GL~~~~ 282 (286)
||+|+|+||+++.
T Consensus 332 Tlar~i~gL~~P~ 344 (539)
T COG1123 332 TLARILAGLLPPS 344 (539)
T ss_pred HHHHHHhCCCCCC
Confidence 9999999999984
No 12
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=1.8e-33 Score=264.41 Aligned_cols=239 Identities=18% Similarity=0.217 Sum_probs=159.4
Q ss_pred Cchhhhh-cCCCCC----CceeEEEECCeecCchhhh---ccc-ceeeEEecCcc--cCCCCCHHHHHHHHHhcCCCCCC
Q psy8953 1 MSIELNV-QSIRLT----GSSGKILVNGQERKSACIE---QFL-KLSCYIQQDDA--LRPKLTVTEAMMIASHLKLGFKV 69 (286)
Q Consensus 1 ~stll~~-~g~~~~----~~~G~i~~~g~~~~~~~~~---~~~-~~~g~v~Q~~~--~~~~~tV~e~l~f~~~~~~~~~~ 69 (286)
|||||++ +|..+. ..+|+|.++|+++...+.. .++ +.+|||+|++. +++.+||+|++.+.+... ...
T Consensus 48 KSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~--~~~ 125 (529)
T PRK15134 48 KSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLH--RGM 125 (529)
T ss_pred HHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHh--cCC
Confidence 8999999 997553 2689999999987542212 222 57999999985 567889999998765421 123
Q ss_pred CHHHHHHHHh-------h-------h-hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC
Q psy8953 70 STQEKKDQVS-------L-------E-LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ 115 (286)
Q Consensus 70 ~~~~~~~~v~-------l-------~-~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~ 115 (286)
+.++..+++. + . ...++|||||| ||++||+.++..++++|++++++
T Consensus 126 ~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~ 205 (529)
T PRK15134 126 RREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQE 205 (529)
T ss_pred CHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHh
Confidence 3444444443 2 1 34568999999 99999999999999999999875
Q ss_pred -CCEEEEEEcCCCHHHHHHhhhHhhhcCCeeecccChhcHHHHHHhCCCCCCCCCCCCCccccccCCceeeeeccCchhh
Q psy8953 116 -GRTVVATIHTPSALLFEKFDSLYALAKGHCIYRGSISRLVPHLASLGLPCPAYHNPADFPNLAKQGRTVVATIHTPSAL 194 (286)
Q Consensus 116 -g~tii~~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~g~~~p~~~~~~~~~~~~~~g~tii~~~h~p~~~ 194 (286)
|+|||+++|+++. +..++||+++|++|++++.|+++++... +.......+........ +.
T Consensus 206 ~g~tvi~vtHd~~~-~~~~~dri~~l~~G~i~~~g~~~~~~~~--------~~~~~~~~~~~~~~~~~--------~~-- 266 (529)
T PRK15134 206 LNMGLLFITHNLSI-VRKLADRVAVMQNGRCVEQNRAATLFSA--------PTHPYTQKLLNSEPSGD--------PV-- 266 (529)
T ss_pred cCCeEEEEcCcHHH-HHHhcCEEEEEECCEEEEeCCHHHHhhC--------CCCHHHHHHHHhCcccc--------cc--
Confidence 9999999999864 5688999999999999999988766421 00000000000000000 00
Q ss_pred HHHHHHHHHHHhcCcceecCCccccccccccCCCCCCCCCCCCc-----ccccccceeeeeEEeCCCEEEEEcCCCCcHH
Q psy8953 195 LFEKFDSLYALAKGHCIYRGSISRLVPHLASLGLPCPAYHNPAD-----FLNKEILHGISGEFKAGQLTAIMGPSGAGKS 269 (286)
Q Consensus 195 l~~~~d~~~~l~~g~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~~il~~~~l~i~~Ge~~aivG~NGsGKS 269 (286)
. .. ........++++... |..... ...+.+|+++||+|++||+++|+|+||||||
T Consensus 267 --------------~--~~-~~~~~~l~~~~l~~~---~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKS 326 (529)
T PRK15134 267 --------------P--LP-EPASPLLDVEQLQVA---FPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKS 326 (529)
T ss_pred --------------c--cC-CCCCCcccccCcEEE---eecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHH
Confidence 0 00 000001111222111 100000 0013589999999999999999999999999
Q ss_pred HHHHHHHcCCC
Q psy8953 270 TLLNILAGLTY 280 (286)
Q Consensus 270 TLl~~l~GL~~ 280 (286)
||+|+|+|+++
T Consensus 327 TLlk~l~Gl~~ 337 (529)
T PRK15134 327 TTGLALLRLIN 337 (529)
T ss_pred HHHHHHhCcCC
Confidence 99999999985
No 13
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-33 Score=269.05 Aligned_cols=264 Identities=16% Similarity=0.142 Sum_probs=163.4
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecC-------------chhhhcc-cceeeEEecCc--ccCCCCCHHHHHHHHHhc
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERK-------------SACIEQF-LKLSCYIQQDD--ALRPKLTVTEAMMIASHL 63 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~-------------~~~~~~~-~~~~g~v~Q~~--~~~~~~tV~e~l~f~~~~ 63 (286)
||||+++ +|+.+. .+|+|.++|..+. ......+ ++.+|||+|+| .+++.+||+|++.|++++
T Consensus 55 KSTLl~~l~Gll~p-~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~ 133 (623)
T PRK10261 55 KSVTALALMRLLEQ-AGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRL 133 (623)
T ss_pred HHHHHHHHHcCCCC-CCeEEEECCEEeccccccccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHH
Confidence 8999999 997644 5899999997441 1011122 24799999998 477899999999999875
Q ss_pred CCCCCCCHHHHHHHHh-------h-------h-hhhcccCCccc-------------------cCCCcchHHHHHHHHHH
Q psy8953 64 KLGFKVSTQEKKDQVS-------L-------E-LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLL 109 (286)
Q Consensus 64 ~~~~~~~~~~~~~~v~-------l-------~-~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l 109 (286)
+. ..+..+.++++. | . ..+++|||||| ||++||+.++.+++++|
T Consensus 134 ~~--~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll 211 (623)
T PRK10261 134 HQ--GASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLI 211 (623)
T ss_pred hc--CCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHH
Confidence 21 234555444443 3 1 45679999999 99999999999999999
Q ss_pred HHHHhC-CCEEEEEEcCCCHHHHHHhhhHhhhcCCeeecccChhcHHHH-----HHhCCCCCCCCCCCCCccccccCCce
Q psy8953 110 ANLAKQ-GRTVVATIHTPSALLFEKFDSLYALAKGHCIYRGSISRLVPH-----LASLGLPCPAYHNPADFPNLAKQGRT 183 (286)
Q Consensus 110 ~~l~~~-g~tii~~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~-----~~~~g~~~p~~~~~~~~~~~~~~g~t 183 (286)
++|+++ |+|||+++|+++ .+..++|||++|++|+++..|+++++... ...+--..|... .. .+..
T Consensus 212 ~~l~~~~g~tvi~itHdl~-~~~~~adri~vl~~G~i~~~g~~~~~~~~~~~~~~~~l~~~~~~~~---~~-----~~~~ 282 (623)
T PRK10261 212 KVLQKEMSMGVIFITHDMG-VVAEIADRVLVMYQGEAVETGSVEQIFHAPQHPYTRALLAAVPQLG---AM-----KGLD 282 (623)
T ss_pred HHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEeeCCeecccCCHHHhhcCCCChhhhhhhhccCccc---cc-----cccc
Confidence 999875 999999999986 46688999999999999999998776421 000000000000 00 0000
Q ss_pred eeeeccCchhhHHHHHHHHHHHhcCcceecCCccccccccccCCCCCCCCCCC-Cc-ccccccceeeeeEEeCCCEEEEE
Q psy8953 184 VVATIHTPSALLFEKFDSLYALAKGHCIYRGSISRLVPHLASLGLPCPAYHNP-AD-FLNKEILHGISGEFKAGQLTAIM 261 (286)
Q Consensus 184 ii~~~h~p~~~l~~~~d~~~~l~~g~~~~~g~~~~~~~~~~~~g~~~~~~~~~-~~-~~~~~il~~~~l~i~~Ge~~aiv 261 (286)
... ..+... ...... ..................++++...+...... .. .....+++++||+|++||+++|+
T Consensus 283 ~~~--~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lv 356 (623)
T PRK10261 283 YPR--RFPLIS--LEHPAK--QEPPIEQDTVVDGEPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLV 356 (623)
T ss_pred CCc--cccccc--cccccc--cCcccccccccCCCceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEE
Confidence 000 000000 000000 00000000000000112222222211100000 00 00135899999999999999999
Q ss_pred cCCCCcHHHHHHHHHcCCCCC
Q psy8953 262 GPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 262 G~NGsGKSTLl~~l~GL~~~~ 282 (286)
|+||||||||+|+|+|+++++
T Consensus 357 G~nGsGKSTLlk~i~Gl~~p~ 377 (623)
T PRK10261 357 GESGSGKSTTGRALLRLVESQ 377 (623)
T ss_pred CCCCCCHHHHHHHHHcCCCCC
Confidence 999999999999999999875
No 14
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=1.4e-32 Score=256.29 Aligned_cols=236 Identities=21% Similarity=0.187 Sum_probs=155.3
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCccc-C-------CCCCHHHHHHHHHhcCCCCCCCH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDAL-R-------PKLTVTEAMMIASHLKLGFKVST 71 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~-~-------~~~tV~e~l~f~~~~~~~~~~~~ 71 (286)
|||||++ +|..+. .+|+|.++|.++...+...+++.+|||+|++.. + ..+||+|++.+..+. ....
T Consensus 42 KSTLl~~l~G~~~p-~~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 116 (490)
T PRK10938 42 KSALARALAGELPL-LSGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDEVKD----PARC 116 (490)
T ss_pred HHHHHHHHhccCCC-CCceEEECCcccccCCHHHHHHHhceeccCcchhhcccchhhccccHHHhcccchhH----HHHH
Confidence 8999999 997543 689999999876432223445679999998742 2 157899887653210 0001
Q ss_pred HHHHHHHhhh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcCCC
Q psy8953 72 QEKKDQVSLE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVATIHTPS 127 (286)
Q Consensus 72 ~~~~~~v~l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~~~ 127 (286)
++..+++.+. ....+|||||| ||++||+.++..++++|++++++|.|||+++|+++
T Consensus 117 ~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~ 196 (490)
T PRK10938 117 EQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFD 196 (490)
T ss_pred HHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 1222333332 45679999999 99999999999999999999888999999999986
Q ss_pred HHHHHHhhhHhhhcCCeeecccChhcHHH--HHHhCCCCCCCCCCCCCccccccCCceeeeeccCchhhHHHHHHHHHHH
Q psy8953 128 ALLFEKFDSLYALAKGHCIYRGSISRLVP--HLASLGLPCPAYHNPADFPNLAKQGRTVVATIHTPSALLFEKFDSLYAL 205 (286)
Q Consensus 128 ~~~~~~~d~v~~l~~G~i~~~g~~~~~~~--~~~~~g~~~p~~~~~~~~~~~~~~g~tii~~~h~p~~~l~~~~d~~~~l 205 (286)
.+...+|++++|++|++++.|+++++.. .+......... .+...+ ... .+...
T Consensus 197 -~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~----~~~-------~~~~~----------- 251 (490)
T PRK10938 197 -EIPDFVQFAGVLADCTLAETGEREEILQQALVAQLAHSEQL--EGVQLP----EPD-------EPSAR----------- 251 (490)
T ss_pred -HHHhhCCEEEEEECCEEEEeCCHHHHhcchhhhhhhhhhcc--CccccC----ccc-------ccccc-----------
Confidence 4668899999999999999998876542 11111100000 000000 000 00000
Q ss_pred hcCcceecCCccccccccccCCCCCCCCCCCCcccccccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCC
Q psy8953 206 AKGHCIYRGSISRLVPHLASLGLPCPAYHNPADFLNKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYL 281 (286)
Q Consensus 206 ~~g~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~ 281 (286)
... ........++++... |.++.+|+++||+|.+||+++|+|+||||||||+|+|+|+.++
T Consensus 252 ----~~~--~~~~~~l~~~~l~~~---------~~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~ 312 (490)
T PRK10938 252 ----HAL--PANEPRIVLNNGVVS---------YNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQ 312 (490)
T ss_pred ----ccc--CCCCceEEEeceEEE---------ECCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCc
Confidence 000 000011112222111 2234589999999999999999999999999999999998764
No 15
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.98 E-value=2.5e-32 Score=260.22 Aligned_cols=176 Identities=37% Similarity=0.606 Sum_probs=157.5
Q ss_pred Cchhhhh-cCCCCCC--ceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHH
Q psy8953 1 MSIELNV-QSIRLTG--SSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQ 77 (286)
Q Consensus 1 ~stll~~-~g~~~~~--~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~ 77 (286)
|||||++ +|+.+.+ .+|+|.+||++++. ..+++.+|||+|+|.+++++||+|+|.|+++++++...+.++++++
T Consensus 64 KSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~---~~~~~~i~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~ 140 (617)
T TIGR00955 64 KTTLMNALAFRSPKGVKGSGSVLLNGMPIDA---KEMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRER 140 (617)
T ss_pred HHHHHHHHhCCCCCCCcceeEEEECCEECCH---HHHhhhceeeccccccCccCcHHHHHHHHHhcCCCCCCCHHHHHHH
Confidence 8999999 9986543 79999999999875 5678899999999999999999999999999988877778887777
Q ss_pred Hh-------hh-hhh----------cccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEE
Q psy8953 78 VS-------LE-LWN----------NFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVV 120 (286)
Q Consensus 78 v~-------l~-~~~----------~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii 120 (286)
++ |. +.| .+|||||| ||+|||+.++..+++.|+++++.|+|||
T Consensus 141 v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi 220 (617)
T TIGR00955 141 VDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTII 220 (617)
T ss_pred HHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHhCCCEEE
Confidence 77 22 222 37899999 9999999999999999999998899999
Q ss_pred EEEcCCCHHHHHHhhhHhhhcCCeeecccChhcHHHHHHhCCCCCCCCCCCCCcccccc
Q psy8953 121 ATIHTPSALLFEKFDSLYALAKGHCIYRGSISRLVPHLASLGLPCPAYHNPADFPNLAK 179 (286)
Q Consensus 121 ~~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~g~~~p~~~~~~~~~~~~~ 179 (286)
+++|||+..+++.||++++|++|+++|.|+++++.++|.++|+.||...||+++..+..
T Consensus 221 ~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~ 279 (617)
T TIGR00955 221 CTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNPADFYVQVL 279 (617)
T ss_pred EEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHHHHHHcCCCCCCCCChHHHHHHHh
Confidence 99999987788999999999999999999999999999999999999999999886553
No 16
>PLN03211 ABC transporter G-25; Provisional
Probab=99.97 E-value=1.2e-31 Score=255.97 Aligned_cols=176 Identities=32% Similarity=0.459 Sum_probs=153.8
Q ss_pred Cchhhhh-cCCCCC-CceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHH
Q psy8953 1 MSIELNV-QSIRLT-GSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQV 78 (286)
Q Consensus 1 ~stll~~-~g~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v 78 (286)
|||||++ +|+.+. ..+|+|.+||+++.. ...+.+|||+|+|.+++.+||+|++.|++.++++...+.+++++++
T Consensus 107 KSTLL~iLaG~~~~~~~sG~I~inG~~~~~----~~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v 182 (659)
T PLN03211 107 KSTLLNALAGRIQGNNFTGTILANNRKPTK----QILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVA 182 (659)
T ss_pred HHHHHHHHhCCCCCCceeEEEEECCEECch----hhccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHH
Confidence 8999999 998654 479999999998753 3346799999999999999999999999988776555666666665
Q ss_pred h-------hh-hhh---------cccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEE
Q psy8953 79 S-------LE-LWN---------NFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVAT 122 (286)
Q Consensus 79 ~-------l~-~~~---------~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~ 122 (286)
+ |. +.+ .+|||||| ||+|||+.++.++++.|++++++|+|||++
T Consensus 183 ~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~ 262 (659)
T PLN03211 183 ESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTS 262 (659)
T ss_pred HHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 5 32 333 37899999 999999999999999999999889999999
Q ss_pred EcCCCHHHHHHhhhHhhhcCCeeecccChhcHHHHHHhCCCCCCCCCCCCCccccccC
Q psy8953 123 IHTPSALLFEKFDSLYALAKGHCIYRGSISRLVPHLASLGLPCPAYHNPADFPNLAKQ 180 (286)
Q Consensus 123 ~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~g~~~p~~~~~~~~~~~~~~ 180 (286)
+|+++..+++.+|++++|++|++++.|+++++.++|+++|+.||...||+|+.++...
T Consensus 263 sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~~f~~~G~~~P~~~NpADf~ldv~~ 320 (659)
T PLN03211 263 MHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADFLLDLAN 320 (659)
T ss_pred ecCCCHHHHHhhceEEEecCCcEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHcC
Confidence 9999876789999999999999999999999999999999999999999999877654
No 17
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=2.1e-31 Score=222.63 Aligned_cols=151 Identities=21% Similarity=0.307 Sum_probs=134.5
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCc-hhhhcccceeeEEecCcc-cCCCCCHHHHHHHHHhcCCCCCCCHHHHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKS-ACIEQFLKLSCYIQQDDA-LRPKLTVTEAMMIASHLKLGFKVSTQEKKDQ 77 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~-~~~~~~~~~~g~v~Q~~~-~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~ 77 (286)
||||+++ +|+... .+|+|+++|.+... .+...+++.+|||||||. |+...||+|+++|++++ .+.+++|+++|
T Consensus 43 KSTL~~~l~GLl~p-~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n---~g~~~~e~~~r 118 (235)
T COG1122 43 KSTLLKLLNGLLKP-TSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLEN---LGLPREEIEER 118 (235)
T ss_pred HHHHHHHHcCcCcC-CCCEEEECCeeccchhhHHHhhcceEEEEECcccccccCcHHHHHhhchhh---cCCCHHHHHHH
Confidence 8999999 997554 67999999999762 445788999999999996 89999999999999994 67789999999
Q ss_pred Hh-------h----h-hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC-CCEEEEEEcC
Q psy8953 78 VS-------L----E-LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ-GRTVVATIHT 125 (286)
Q Consensus 78 v~-------l----~-~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~-g~tii~~~h~ 125 (286)
|+ + . .++.+|||||| |||+||+.++.++++++++|+.+ |+|||+++|+
T Consensus 119 v~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd 198 (235)
T COG1122 119 VAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHD 198 (235)
T ss_pred HHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCc
Confidence 88 2 2 56789999999 99999999999999999999987 8999999999
Q ss_pred CCHHHHHHhhhHhhhcCCeeecccChhcHHH
Q psy8953 126 PSALLFEKFDSLYALAKGHCIYRGSISRLVP 156 (286)
Q Consensus 126 ~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 156 (286)
.+ .+..++|++++|++|+++++|+|.+++.
T Consensus 199 ~~-~~~~~ad~v~vl~~G~i~~~g~p~~i~~ 228 (235)
T COG1122 199 LE-LVLEYADRVVVLDDGKILADGDPAEIFN 228 (235)
T ss_pred HH-HHHhhCCEEEEEECCEEeecCCHHHHhh
Confidence 96 5778899999999999999999988765
No 18
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.9e-29 Score=237.29 Aligned_cols=139 Identities=15% Similarity=0.192 Sum_probs=105.2
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHh-c-----------CCCC
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASH-L-----------KLGF 67 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~-~-----------~~~~ 67 (286)
|||||++ +|..+. .+|+|.++|. ..+|||+|++.+++.+||+|++.|+.. . ..+.
T Consensus 40 KSTLl~~l~Gl~~p-~~G~i~~~~~-----------~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~ 107 (530)
T PRK15064 40 KSTFMKILGGDLEP-SAGNVSLDPN-----------ERLGKLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPE 107 (530)
T ss_pred HHHHHHHHhCCCCC-CCceEEecCC-----------CEEEEEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccc
Confidence 8999999 997543 6899999873 348999999988999999999988641 0 0000
Q ss_pred ---C--CC------------HHHHHHHHh-------hh------hhhcccCCccc-------------------cCCCcc
Q psy8953 68 ---K--VS------------TQEKKDQVS-------LE------LWNNFCKKKKK-------------------KKRGLD 98 (286)
Q Consensus 68 ---~--~~------------~~~~~~~v~-------l~------~~~~~~gG~kq-------------------ptsgLD 98 (286)
. .. ..+.++++. +. ...++|||||| ||++||
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD 187 (530)
T PRK15064 108 MSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLD 187 (530)
T ss_pred cccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccC
Confidence 0 00 001122222 21 23568999999 999999
Q ss_pred hHHHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHhhhHhhhcCCee-ecccChhcHH
Q psy8953 99 SSSCSQCVSLLANLAKQGRTVVATIHTPSALLFEKFDSLYALAKGHC-IYRGSISRLV 155 (286)
Q Consensus 99 ~~~~~~~~~~l~~l~~~g~tii~~~h~~~~~~~~~~d~v~~l~~G~i-~~~g~~~~~~ 155 (286)
+.++..+.++|++ .|.|||+++|+++ .+...+|++++|++|++ ++.|++++..
T Consensus 188 ~~~~~~l~~~l~~---~~~tiiivsHd~~-~~~~~~d~i~~l~~g~i~~~~g~~~~~~ 241 (530)
T PRK15064 188 INTIRWLEDVLNE---RNSTMIIISHDRH-FLNSVCTHMADLDYGELRVYPGNYDEYM 241 (530)
T ss_pred HHHHHHHHHHHHh---CCCeEEEEeCCHH-HHHhhcceEEEEeCCEEEEecCCHHHHH
Confidence 9999999999863 5899999999986 46688999999999999 5889887654
No 19
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.96 E-value=8.6e-30 Score=204.21 Aligned_cols=152 Identities=21% Similarity=0.258 Sum_probs=131.7
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCc-hhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKS-ACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQV 78 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~-~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v 78 (286)
|||||.| +++... .+|+|+|+|+++.. .++..+++.+|+|||+..+||++||.||+..++.. -.+.+++|.+++.
T Consensus 41 KSTlLRclN~LE~~-~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~--v~~~~k~eA~~~A 117 (240)
T COG1126 41 KSTLLRCLNGLEEP-DSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVK--VKKLSKAEAREKA 117 (240)
T ss_pred HHHHHHHHHCCcCC-CCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhHH--HcCCCHHHHHHHH
Confidence 8999999 997665 79999999987743 24577899999999999999999999999999962 1455677766554
Q ss_pred h-------hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcCCC
Q psy8953 79 S-------LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVATIHTPS 127 (286)
Q Consensus 79 ~-------l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~~~ 127 (286)
. |. ++..+||||+| |||.|||+...++++.+++|+++|+|+|+++|...
T Consensus 118 ~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~ 197 (240)
T COG1126 118 LELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMG 197 (240)
T ss_pred HHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhH
Confidence 4 22 77889999999 99999999999999999999999999999999986
Q ss_pred HHHHHHhhhHhhhcCCeeecccChhcHHH
Q psy8953 128 ALLFEKFDSLYALAKGHCIYRGSISRLVP 156 (286)
Q Consensus 128 ~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 156 (286)
. ..+.+|||+.|++|+++..|+|++++.
T Consensus 198 F-Ar~VadrviFmd~G~iie~g~p~~~f~ 225 (240)
T COG1126 198 F-AREVADRVIFMDQGKIIEEGPPEEFFD 225 (240)
T ss_pred H-HHHhhheEEEeeCCEEEEecCHHHHhc
Confidence 4 568899999999999999999988764
No 20
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.96 E-value=6e-29 Score=234.74 Aligned_cols=139 Identities=19% Similarity=0.218 Sum_probs=104.5
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHh-cC-----CC-----CC
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASH-LK-----LG-----FK 68 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~-~~-----~~-----~~ 68 (286)
|||||++ +|..+. .+|+|.+++ ...+|||+|++.+++.+||.|++.|+.. .+ .. ..
T Consensus 44 KSTLl~~i~G~~~p-~~G~i~~~~-----------~~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~ 111 (552)
T TIGR03719 44 KSTLLRIMAGVDKE-FNGEARPAP-----------GIKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFA 111 (552)
T ss_pred HHHHHHHHhCCCCC-CCceEEecC-----------CCEEEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhc
Confidence 8999999 997543 689999975 1459999999999999999999998642 10 00 00
Q ss_pred CCHHH----------------------HHHHHh-------h---h-hhhcccCCccc-------------------cCCC
Q psy8953 69 VSTQE----------------------KKDQVS-------L---E-LWNNFCKKKKK-------------------KKRG 96 (286)
Q Consensus 69 ~~~~~----------------------~~~~v~-------l---~-~~~~~~gG~kq-------------------ptsg 96 (286)
.+.++ ..+++. + . ...++|||||| ||++
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~ 191 (552)
T TIGR03719 112 EPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNH 191 (552)
T ss_pred cCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCcccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCC
Confidence 01111 112222 1 1 34568999999 9999
Q ss_pred cchHHHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHhhhHhhhcCCeee-cccChhcHH
Q psy8953 97 LDSSSCSQCVSLLANLAKQGRTVVATIHTPSALLFEKFDSLYALAKGHCI-YRGSISRLV 155 (286)
Q Consensus 97 LD~~~~~~~~~~l~~l~~~g~tii~~~h~~~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~ 155 (286)
||+.++..+.+.|+++ +.|||+++|+++ .+...+|++++|++|+++ +.|+.+++.
T Consensus 192 LD~~~~~~l~~~L~~~---~~tvIiisHd~~-~~~~~~d~v~~l~~g~i~~~~g~~~~~~ 247 (552)
T TIGR03719 192 LDAESVAWLEQHLQEY---PGTVVAVTHDRY-FLDNVAGWILELDRGRGIPWEGNYSSWL 247 (552)
T ss_pred CChHHHHHHHHHHHhC---CCeEEEEeCCHH-HHHhhcCeEEEEECCEEEEecCCHHHHH
Confidence 9999999999999876 349999999986 466889999999999976 788877654
No 21
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.96 E-value=8.6e-29 Score=233.75 Aligned_cols=138 Identities=20% Similarity=0.245 Sum_probs=104.3
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHh-cC--------C--CCC
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASH-LK--------L--GFK 68 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~-~~--------~--~~~ 68 (286)
|||||++ +|..+. .+|+|.+++. ..+|||+|++.+++.+||.|++.|+.. .. + ...
T Consensus 46 KSTLlk~i~G~~~p-~~G~i~~~~~-----------~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~ 113 (556)
T PRK11819 46 KSTLLRIMAGVDKE-FEGEARPAPG-----------IKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYA 113 (556)
T ss_pred HHHHHHHHhCCCCC-CCceEEecCC-----------CEEEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhc
Confidence 8999999 997543 6899999751 359999999999999999999998642 10 0 000
Q ss_pred CCHH----------------------HHHHHHh-------h---h-hhhcccCCccc-------------------cCCC
Q psy8953 69 VSTQ----------------------EKKDQVS-------L---E-LWNNFCKKKKK-------------------KKRG 96 (286)
Q Consensus 69 ~~~~----------------------~~~~~v~-------l---~-~~~~~~gG~kq-------------------ptsg 96 (286)
.+.+ +..+++. + . ....+|||||| ||++
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~ 193 (556)
T PRK11819 114 EPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNH 193 (556)
T ss_pred cCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCcccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCc
Confidence 0100 1122222 2 1 34578999999 9999
Q ss_pred cchHHHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHhhhHhhhcCCeee-cccChhcH
Q psy8953 97 LDSSSCSQCVSLLANLAKQGRTVVATIHTPSALLFEKFDSLYALAKGHCI-YRGSISRL 154 (286)
Q Consensus 97 LD~~~~~~~~~~l~~l~~~g~tii~~~h~~~~~~~~~~d~v~~l~~G~i~-~~g~~~~~ 154 (286)
||+.++..+.++|+++. .|||+++|+++ .+...+|++++|++|+++ +.|+.++.
T Consensus 194 LD~~~~~~l~~~L~~~~---~tviiisHd~~-~~~~~~d~i~~l~~g~i~~~~g~~~~~ 248 (556)
T PRK11819 194 LDAESVAWLEQFLHDYP---GTVVAVTHDRY-FLDNVAGWILELDRGRGIPWEGNYSSW 248 (556)
T ss_pred CChHHHHHHHHHHHhCC---CeEEEEeCCHH-HHHhhcCeEEEEeCCEEEEecCCHHHH
Confidence 99999999999999873 49999999986 466889999999999986 88887654
No 22
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=1.4e-29 Score=213.04 Aligned_cols=150 Identities=23% Similarity=0.304 Sum_probs=135.1
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecC---chhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERK---SACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKD 76 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~---~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~ 76 (286)
||||+.+ +++... .+|+|+|||+++. ..+.+.+++.+|++||++.++...||+|++||.+|+ .+.+++|+++
T Consensus 45 KSTLiR~iN~Le~P-tsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLei---ag~~k~ei~~ 120 (339)
T COG1135 45 KSTLLRLINLLERP-TSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLEL---AGVPKAEIKQ 120 (339)
T ss_pred HHHHHHHHhccCCC-CCceEEEcCEecccCChHHHHHHHhhccEEeccccccccchHHhhhhhhHhh---cCCCHHHHHH
Confidence 8999999 987544 8999999997775 356677789999999999999999999999999997 5578999999
Q ss_pred HHh-------hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC-CCEEEEEEc
Q psy8953 77 QVS-------LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ-GRTVVATIH 124 (286)
Q Consensus 77 ~v~-------l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~-g~tii~~~h 124 (286)
||. |. ++..+|||||| |||.|||.++..++.+|++++++ |.||++++|
T Consensus 121 RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITH 200 (339)
T COG1135 121 RVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITH 200 (339)
T ss_pred HHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEec
Confidence 988 22 56679999999 99999999999999999999987 999999999
Q ss_pred CCCHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 125 TPSALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 125 ~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
.++ .+-..||||+||++|+++..|+..+++
T Consensus 201 Em~-Vvk~ic~rVavm~~G~lvE~G~v~~vF 230 (339)
T COG1135 201 EME-VVKRICDRVAVLDQGRLVEEGTVSEVF 230 (339)
T ss_pred hHH-HHHHHhhhheEeeCCEEEEeccHHHhh
Confidence 996 578999999999999999999988876
No 23
>PLN03140 ABC transporter G family member; Provisional
Probab=99.96 E-value=5e-29 Score=254.02 Aligned_cols=176 Identities=30% Similarity=0.508 Sum_probs=151.7
Q ss_pred Cchhhhh-cCCCCC-CceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHH
Q psy8953 1 MSIELNV-QSIRLT-GSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQV 78 (286)
Q Consensus 1 ~stll~~-~g~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v 78 (286)
|||||++ +|+... ..+|+|.+||++... ..+++.+|||+|+|.+++.+||+|+|.|++.++++...+.+++.++|
T Consensus 919 KTTLL~~LaG~~~~g~~~G~I~inG~~~~~---~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v 995 (1470)
T PLN03140 919 KTTLMDVLAGRKTGGYIEGDIRISGFPKKQ---ETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFV 995 (1470)
T ss_pred HHHHHHHHcCCCCCCcccceEEECCccCCh---HHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHH
Confidence 8999999 998654 589999999998754 45678899999999999999999999999998887666666665555
Q ss_pred h-------hh-hh---------hcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEE
Q psy8953 79 S-------LE-LW---------NNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVAT 122 (286)
Q Consensus 79 ~-------l~-~~---------~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~ 122 (286)
+ |. +. ..+|||||| ||+|||+.++..++++|++++++|+|||++
T Consensus 996 ~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t 1075 (1470)
T PLN03140 996 DEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 1075 (1470)
T ss_pred HHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 4 22 22 357899999 999999999999999999999889999999
Q ss_pred EcCCCHHHHHHhhhHhhhcC-CeeecccCh----hcHHHHHHhC-CCC-CCCCCCCCCcccccc
Q psy8953 123 IHTPSALLFEKFDSLYALAK-GHCIYRGSI----SRLVPHLASL-GLP-CPAYHNPADFPNLAK 179 (286)
Q Consensus 123 ~h~~~~~~~~~~d~v~~l~~-G~i~~~g~~----~~~~~~~~~~-g~~-~p~~~~~~~~~~~~~ 179 (286)
+|||+..+++.||++++|++ |+++|.|++ +++.+||+++ |.+ ||+..||+++.++..
T Consensus 1076 ~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~~~~~~~~~~yF~~~~g~~~~p~~~NPAd~~l~v~ 1139 (1470)
T PLN03140 1076 IHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVS 1139 (1470)
T ss_pred eCCCCHHHHHhCCEEEEEcCCCEEEEECCcccccccHHHHHHhcCCCCCCCCCCCchhhhhhhh
Confidence 99998767889999999996 899999996 5788999997 664 899999999987764
No 24
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.96 E-value=8.1e-29 Score=252.94 Aligned_cols=176 Identities=26% Similarity=0.324 Sum_probs=148.6
Q ss_pred Cchhhhh-cCCCC---CCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCC----CCCHH
Q psy8953 1 MSIELNV-QSIRL---TGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGF----KVSTQ 72 (286)
Q Consensus 1 ~stll~~-~g~~~---~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~----~~~~~ 72 (286)
|||||++ +|+.. ...+|+|.+||+++.... ..+++.++||+|+|.+++++||+|+|.|+++++.+. ..+++
T Consensus 100 KSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~-~~~r~~i~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~ 178 (1394)
T TIGR00956 100 CSTLLKTIASNTDGFHIGVEGVITYDGITPEEIK-KHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSRE 178 (1394)
T ss_pred HHHHHHHHhCCCCCCCCCceeEEEECCEehHHHH-hhcCceeEEeccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHH
Confidence 8999999 99853 248999999999875421 345677999999999999999999999999987653 24555
Q ss_pred HHHHHH-h-------hh-hhh---------cccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC
Q psy8953 73 EKKDQV-S-------LE-LWN---------NFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ 115 (286)
Q Consensus 73 ~~~~~v-~-------l~-~~~---------~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~ 115 (286)
+..+++ + |. +.+ .+|||||| ||+|||+.++.++++.|++++++
T Consensus 179 ~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~ 258 (1394)
T TIGR00956 179 EYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANI 258 (1394)
T ss_pred HHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHh
Confidence 543332 2 33 433 37899999 99999999999999999999975
Q ss_pred -CCEEEEEEcCCCHHHHHHhhhHhhhcCCeeecccChhcHHHHHHhCCCCCCCCCCCCCcccc
Q psy8953 116 -GRTVVATIHTPSALLFEKFDSLYALAKGHCIYRGSISRLVPHLASLGLPCPAYHNPADFPNL 177 (286)
Q Consensus 116 -g~tii~~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~g~~~p~~~~~~~~~~~ 177 (286)
|+|||+++|||...+++.||++++|++|++++.|+++++.++|+++|+.||+..+|+|+..+
T Consensus 259 ~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~yF~~lG~~~p~~~n~aDfl~~ 321 (1394)
T TIGR00956 259 LDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCPDRQTTADFLTS 321 (1394)
T ss_pred cCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHHHHHHcCCCCCCCCChHHHHHh
Confidence 99999999999888899999999999999999999999999999999999999998877543
No 25
>PLN03140 ABC transporter G family member; Provisional
Probab=99.96 E-value=1e-28 Score=251.70 Aligned_cols=175 Identities=26% Similarity=0.331 Sum_probs=145.7
Q ss_pred Cchhhhh-cCCCCC--CceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCC-------CCC
Q psy8953 1 MSIELNV-QSIRLT--GSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGF-------KVS 70 (286)
Q Consensus 1 ~stll~~-~g~~~~--~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~-------~~~ 70 (286)
|||||++ +|+... ..+|+|.+||++... ...++.++||+|+|.+++.+||+|+|.|+++++.+. ..+
T Consensus 204 KSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~---~~~~~~i~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~ 280 (1470)
T PLN03140 204 KTTLLLALAGKLDPSLKVSGEITYNGYRLNE---FVPRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELA 280 (1470)
T ss_pred HHHHHHHHhCCCCCCCcceeEEEECCEechh---hcccceeEEecccccCCCcCcHHHHHHHHHHhcCCCCcccchhhcC
Confidence 8999999 997543 479999999999865 234678999999999999999999999999865321 112
Q ss_pred HHHHH------------------------HHHh-------hh-hhh---------cccCCccc-----------------
Q psy8953 71 TQEKK------------------------DQVS-------LE-LWN---------NFCKKKKK----------------- 92 (286)
Q Consensus 71 ~~~~~------------------------~~v~-------l~-~~~---------~~~gG~kq----------------- 92 (286)
++|++ .+++ |. +.+ .+||||||
T Consensus 281 ~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL~~~p~vlll 360 (1470)
T PLN03140 281 RREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFM 360 (1470)
T ss_pred HHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCcccceeeeehhhhcCCCcEEEE
Confidence 22211 0122 33 443 36799999
Q ss_pred --cCCCcchHHHHHHHHHHHHHHh-CCCEEEEEEcCCCHHHHHHhhhHhhhcCCeeecccChhcHHHHHHhCCCCCCCCC
Q psy8953 93 --KKRGLDSSSCSQCVSLLANLAK-QGRTVVATIHTPSALLFEKFDSLYALAKGHCIYRGSISRLVPHLASLGLPCPAYH 169 (286)
Q Consensus 93 --ptsgLD~~~~~~~~~~l~~l~~-~g~tii~~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~g~~~p~~~ 169 (286)
||+|||+.++.++++.|+++++ .|+|+|+++|||..+++++||+|++|++|+++|.|+++++.++|+++|+.||+..
T Consensus 361 DEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ivy~G~~~~~~~yF~~lGf~cP~~~ 440 (1470)
T PLN03140 361 DEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESCGFKCPERK 440 (1470)
T ss_pred eCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceEEEeCCHHHHHHHHHHcCCCCCCCC
Confidence 9999999999999999999987 5999999999998889999999999999999999999999999999999999999
Q ss_pred CCCCccccc
Q psy8953 170 NPADFPNLA 178 (286)
Q Consensus 170 ~~~~~~~~~ 178 (286)
+|+|+..+.
T Consensus 441 n~ADFl~~v 449 (1470)
T PLN03140 441 GTADFLQEV 449 (1470)
T ss_pred ChHHHHHHh
Confidence 998877543
No 26
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.96 E-value=9.2e-29 Score=252.53 Aligned_cols=175 Identities=33% Similarity=0.489 Sum_probs=152.0
Q ss_pred Cchhhhh-cCCCCC--CceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHH
Q psy8953 1 MSIELNV-QSIRLT--GSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQ 77 (286)
Q Consensus 1 ~stll~~-~g~~~~--~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~ 77 (286)
||||||+ +|+.+. ..+|+|++||+++. ..+++.+|||+|+|.+++.+||+|+|.|++.++++...+.+++.++
T Consensus 802 KSTLL~~Lag~~~~g~~~~G~I~i~G~~~~----~~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~ 877 (1394)
T TIGR00956 802 KTTLLNVLAERVTTGVITGGDRLVNGRPLD----SSFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEY 877 (1394)
T ss_pred HHHHHHHHhCCCCCCCcceeEEEECCEECC----hhhhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHH
Confidence 8999999 998753 36799999999985 3467899999999999999999999999999887766677777666
Q ss_pred Hh-------hh-hhh--------cccCCccc--------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEE
Q psy8953 78 VS-------LE-LWN--------NFCKKKKK--------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVA 121 (286)
Q Consensus 78 v~-------l~-~~~--------~~~gG~kq--------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~ 121 (286)
|+ |. +.+ .+|||||| ||+|||+.++..++++|++++++|+|||+
T Consensus 878 v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~ 957 (1394)
T TIGR00956 878 VEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILC 957 (1394)
T ss_pred HHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEE
Confidence 65 22 333 47899999 99999999999999999999888999999
Q ss_pred EEcCCCHHHHHHhhhHhhhcCC-eeecccCh----hcHHHHHHhCCC-CCCCCCCCCCcccccc
Q psy8953 122 TIHTPSALLFEKFDSLYALAKG-HCIYRGSI----SRLVPHLASLGL-PCPAYHNPADFPNLAK 179 (286)
Q Consensus 122 ~~h~~~~~~~~~~d~v~~l~~G-~i~~~g~~----~~~~~~~~~~g~-~~p~~~~~~~~~~~~~ 179 (286)
++|||+..+++.||++++|++| ++++.|++ +++.++|+..|+ .||...||+|+.++..
T Consensus 958 t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~~~~~~~~yf~~~G~~~~p~~~NpAd~~ldvi 1021 (1394)
T TIGR00956 958 TIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSHTIINYFEKHGAPKCPEDANPAEWMLEVI 1021 (1394)
T ss_pred EecCCCHHHHHhcCEEEEEcCCCEEEEECCcccccchHHHHHHhcCCCCCCCCCCHHHHHHHHh
Confidence 9999997777889999999987 99999997 457799999996 8999999999987653
No 27
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.96 E-value=5.2e-28 Score=209.42 Aligned_cols=228 Identities=21% Similarity=0.260 Sum_probs=161.3
Q ss_pred CceeEEEECCeecCchhhhccc----ceeeEEecCcc--cCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh--------
Q psy8953 14 GSSGKILVNGQERKSACIEQFL----KLSCYIQQDDA--LRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS-------- 79 (286)
Q Consensus 14 ~~~G~i~~~g~~~~~~~~~~~~----~~~g~v~Q~~~--~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~-------- 79 (286)
.-+|+|.++|++.-..+-+.++ ..++++||+|. +-|-.|+..-|+=..+++- ++++++-++|+-
T Consensus 67 ~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hr--g~~~~~Ar~r~lelL~~VgI 144 (534)
T COG4172 67 HPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHR--GLSRAAARARALELLELVGI 144 (534)
T ss_pred CccceeEEcChhhhcCCHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHh--cccHHHHHHHHHHHHHHcCC
Confidence 4889999999998654334443 58999999994 6799999999998887533 445666555543
Q ss_pred ------hh-hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC-CCEEEEEEcCCCHHHHH
Q psy8953 80 ------LE-LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ-GRTVVATIHTPSALLFE 132 (286)
Q Consensus 80 ------l~-~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~-g~tii~~~h~~~~~~~~ 132 (286)
|. ++|.+|||||| ||+.||..-+.+++++|++|.++ |+.+++++|++. .+-.
T Consensus 145 ~~p~~rl~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~-iVr~ 223 (534)
T COG4172 145 PEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLG-IVRK 223 (534)
T ss_pred CchhhhhhhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHH-HHHH
Confidence 55 88999999999 99999999999999999999886 999999999996 6889
Q ss_pred HhhhHhhhcCCeeecccChhcHHH-----HHHhCCCCCCCCCCCCCccccccCCceeeeeccCchhhHHHHHHHHHHHhc
Q psy8953 133 KFDSLYALAKGHCIYRGSISRLVP-----HLASLGLPCPAYHNPADFPNLAKQGRTVVATIHTPSALLFEKFDSLYALAK 207 (286)
Q Consensus 133 ~~d~v~~l~~G~i~~~g~~~~~~~-----~~~~~g~~~p~~~~~~~~~~~~~~g~tii~~~h~p~~~l~~~~d~~~~l~~ 207 (286)
++|||.||.+|+++..|+.+.++. |-..+--..|....+.. ...+..++... +
T Consensus 224 ~ADrV~VM~~G~ivE~~~t~~lF~~PqHpYTr~Ll~aeP~g~~~p~----~~~~~~ll~~~------------------~ 281 (534)
T COG4172 224 FADRVYVMQHGEIVETGTTETLFAAPQHPYTRKLLAAEPSGDPPPL----PEDAPVLLEVE------------------D 281 (534)
T ss_pred hhhhEEEEeccEEeecCcHHHHhhCCCChHHHHHHhcCCCCCCCCC----CCCCCceEEec------------------c
Confidence 999999999999999999888763 22211111121111100 00011110000 0
Q ss_pred CcceecCCccccccccccCCCCCCCCCCCCcccccccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 208 GHCIYRGSISRLVPHLASLGLPCPAYHNPADFLNKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 208 g~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
-++.|.. .-|+... ..+ ...+++++||++++||.++|||++|||||||-++|.+|++..
T Consensus 282 v~v~f~i----------~~g~~~r----~~~--~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~ 340 (534)
T COG4172 282 LRVWFPI----------KGGFLRR----TVD--HLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ 340 (534)
T ss_pred eEEEEec----------CCccccc----cch--heEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC
Confidence 0111110 0011000 000 124899999999999999999999999999999999998753
No 28
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.95 E-value=1.6e-28 Score=213.30 Aligned_cols=149 Identities=20% Similarity=0.211 Sum_probs=135.0
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
|||||++ ||+... .+|+|+|+|.+++..+. ..|.+|||||+..+||++||+|+|+|++++ .+++++|+++||.
T Consensus 42 KSTlLr~IAGLe~~-~~G~I~i~g~~vt~l~P--~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~---~~~~k~ei~~rV~ 115 (338)
T COG3839 42 KSTLLRMIAGLEEP-TSGEILIDGRDVTDLPP--EKRGIAMVFQNYALYPHMTVYENIAFGLKL---RGVPKAEIDKRVK 115 (338)
T ss_pred HHHHHHHHhCCCCC-CCceEEECCEECCCCCh--hHCCEEEEeCCccccCCCcHHHHhhhhhhh---CCCchHHHHHHHH
Confidence 8999999 997655 79999999999987544 459999999999999999999999999997 5678999999988
Q ss_pred -----------hh-hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC-CCEEEEEEcCCC
Q psy8953 80 -----------LE-LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ-GRTVVATIHTPS 127 (286)
Q Consensus 80 -----------l~-~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~-g~tii~~~h~~~ 127 (286)
|+ .+..+||||+| |.|+||+.-+.++...|++|+++ |.|+|.++|+..
T Consensus 116 eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~ 195 (338)
T COG3839 116 EVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQV 195 (338)
T ss_pred HHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHH
Confidence 33 66789999999 99999999999999999999987 999999999986
Q ss_pred HHHHHHhhhHhhhcCCeeecccChhcHHH
Q psy8953 128 ALLFEKFDSLYALAKGHCIYRGSISRLVP 156 (286)
Q Consensus 128 ~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 156 (286)
+ ...++||+++|++|+|.-.|+|.++..
T Consensus 196 E-Amtladri~Vm~~G~i~Q~g~p~ely~ 223 (338)
T COG3839 196 E-AMTLADRIVVMNDGRIQQVGTPLELYE 223 (338)
T ss_pred H-HHhhCCEEEEEeCCeeeecCChHHHhh
Confidence 4 668999999999999999999999874
No 29
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.95 E-value=9.7e-28 Score=196.51 Aligned_cols=151 Identities=19% Similarity=0.277 Sum_probs=138.7
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
|||+|.. .++... .+|+|++||++++..+..++++.+|||-|.-.+||++||+|+|++-+++ .+++++++++|++
T Consensus 40 KTTtLkMINrLiep-t~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L---~~w~k~~i~~r~~ 115 (309)
T COG1125 40 KTTTLKMINRLIEP-TSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKL---LGWDKERIKKRAD 115 (309)
T ss_pred HHHHHHHHhcccCC-CCceEEECCeecccCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhh---cCCCHHHHHHHHH
Confidence 7999999 887655 8999999999999888889999999999999999999999999999997 6788999999988
Q ss_pred -------h------h-hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC-CCEEEEEEcC
Q psy8953 80 -------L------E-LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ-GRTVVATIHT 125 (286)
Q Consensus 80 -------l------~-~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~-g~tii~~~h~ 125 (286)
| . +++.+||||.| |.+.|||.++.++-..+.+++++ |+|||+++|+
T Consensus 116 ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHD 195 (309)
T COG1125 116 ELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHD 195 (309)
T ss_pred HHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecC
Confidence 1 2 67889999999 99999999999999999999987 9999999999
Q ss_pred CCHHHHHHhhhHhhhcCCeeecccChhcHHH
Q psy8953 126 PSALLFEKFDSLYALAKGHCIYRGSISRLVP 156 (286)
Q Consensus 126 ~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 156 (286)
.++ .+.++||+++|++|+++-.++|+++..
T Consensus 196 idE-A~kLadri~vm~~G~i~Q~~~P~~il~ 225 (309)
T COG1125 196 IDE-ALKLADRIAVMDAGEIVQYDTPDEILA 225 (309)
T ss_pred HHH-HHhhhceEEEecCCeEEEeCCHHHHHh
Confidence 975 669999999999999999999988763
No 30
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.95 E-value=1.4e-26 Score=205.69 Aligned_cols=231 Identities=19% Similarity=0.278 Sum_probs=166.0
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhh-hcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACI-EQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQV 78 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~-~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v 78 (286)
|||||++ .|.... .+|+|+++|+++.-.+. ...+.-+|+|+|++.+++++||.|||..+.+-.....++..+.++++
T Consensus 43 KSTLm~iL~G~~~P-~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i 121 (501)
T COG3845 43 KSTLMKILFGLYQP-DSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARI 121 (501)
T ss_pred HHHHHHHHhCcccC-CcceEEECCEEeccCCHHHHHHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHH
Confidence 8999999 995433 79999999999975333 44467999999999999999999999999985333345666666665
Q ss_pred h-------h----h-hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcCCC
Q psy8953 79 S-------L----E-LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVATIHTPS 127 (286)
Q Consensus 79 ~-------l----~-~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~~~ 127 (286)
. | + ....++=|++| ||+-|-|....+++.+|++|+++|.|||+++|+..
T Consensus 122 ~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~ 201 (501)
T COG3845 122 KELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLK 201 (501)
T ss_pred HHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH
Confidence 5 2 2 34557778888 99999999999999999999999999999999997
Q ss_pred HHHHHHhhhHhhhcCCeeecccC-hhcH-HHHHHhC--CCCCCCCCCCCCccccccCCceeeeeccCchhhHHHHHHHHH
Q psy8953 128 ALLFEKFDSLYALAKGHCIYRGS-ISRL-VPHLASL--GLPCPAYHNPADFPNLAKQGRTVVATIHTPSALLFEKFDSLY 203 (286)
Q Consensus 128 ~~~~~~~d~v~~l~~G~i~~~g~-~~~~-~~~~~~~--g~~~p~~~~~~~~~~~~~~g~tii~~~h~p~~~l~~~~d~~~ 203 (286)
++.+++||+-||.+|+++..-+ ..+. ...+..+ |=......+ ......+..+
T Consensus 202 -Ev~~iaDrvTVLR~Gkvvgt~~~~~~~t~~ela~lMvG~~v~~~~~----~~~~~pg~~v------------------- 257 (501)
T COG3845 202 -EVMAIADRVTVLRRGKVVGTVDPVAETTEEELAELMVGREVVLRVV----KPPSTPGEVV------------------- 257 (501)
T ss_pred -HHHHhhCeeEEEeCCeEEeeecCCCCCCHHHHHHHhcCCccccccc----cCCCCCCCeE-------------------
Confidence 5779999999999999886655 2231 1222221 110000000 0000001111
Q ss_pred HHhcCcceecCCccccccccccCCCCCCCCCCCCcccccccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCC
Q psy8953 204 ALAKGHCIYRGSISRLVPHLASLGLPCPAYHNPADFLNKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYL 281 (286)
Q Consensus 204 ~l~~g~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~ 281 (286)
..++++... ... ....++++||++++||+++|.|-.|-|-+-|+.+|+|+.++
T Consensus 258 -----------------L~V~~L~v~--~~~------~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~ 310 (501)
T COG3845 258 -----------------LEVEDLSVK--DRR------GVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKP 310 (501)
T ss_pred -----------------EEEeeeEee--cCC------CCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCcc
Confidence 111111110 000 12469999999999999999999999999999999999865
No 31
>PRK13409 putative ATPase RIL; Provisional
Probab=99.95 E-value=3.8e-27 Score=222.47 Aligned_cols=233 Identities=18% Similarity=0.157 Sum_probs=138.9
Q ss_pred Cchhhhh-cCCCCCCceeEEE-----------ECCeecCchh--hhcccceeeEEecCcccCC---CCCHHHHHHHHHhc
Q psy8953 1 MSIELNV-QSIRLTGSSGKIL-----------VNGQERKSAC--IEQFLKLSCYIQQDDALRP---KLTVTEAMMIASHL 63 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~-----------~~g~~~~~~~--~~~~~~~~g~v~Q~~~~~~---~~tV~e~l~f~~~~ 63 (286)
|||||++ +|..+. .+|+|. ++|+++.... .......++|++|...+++ ..||+|.+++..+.
T Consensus 112 KSTLlkiL~G~l~p-~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~~~~ 190 (590)
T PRK13409 112 KTTAVKILSGELIP-NLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVDER 190 (590)
T ss_pred HHHHHHHHhCCccC-CCccccCCCcHHHHHHHhCChHHHHHHHHHhccCcceeecccchhhhhhhhcchHHHHHHhhhHH
Confidence 8999999 996544 479997 9998874311 0111234566666544433 33999999764210
Q ss_pred CCCCCCCHHHHHHHHhhh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEE
Q psy8953 64 KLGFKVSTQEKKDQVSLE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTV 119 (286)
Q Consensus 64 ~~~~~~~~~~~~~~v~l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~ti 119 (286)
-..++..+.+.+. ....+||||+| ||++||+.++..++++|+++++ |.||
T Consensus 191 -----~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~-g~tv 264 (590)
T PRK13409 191 -----GKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAE-GKYV 264 (590)
T ss_pred -----HHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEE
Confidence 0012222333332 45679999999 9999999999999999999988 9999
Q ss_pred EEEEcCCCHHHHHHhhhHhhhcCCe--e-ecccChhcH---H-HHHHhCCCCCCCCCCCCCccccccCCceeeeeccCch
Q psy8953 120 VATIHTPSALLFEKFDSLYALAKGH--C-IYRGSISRL---V-PHLASLGLPCPAYHNPADFPNLAKQGRTVVATIHTPS 192 (286)
Q Consensus 120 i~~~h~~~~~~~~~~d~v~~l~~G~--i-~~~g~~~~~---~-~~~~~~g~~~p~~~~~~~~~~~~~~g~tii~~~h~p~ 192 (286)
|+++|+++ .+..++|++++|.++. . ++. .+... . .+.. ++.... + ..+ . ..... ...+.+.
T Consensus 265 IivsHd~~-~l~~~~D~v~vl~~~~g~~g~~~-~~~~~~~~i~~~~~--~~~~~e--~-~~~-~--~~~~~--~~~~~~~ 332 (590)
T PRK13409 265 LVVEHDLA-VLDYLADNVHIAYGEPGAYGVVS-KPKGVRVGINEYLK--GYLPEE--N-MRI-R--PEPIE--FEERPPR 332 (590)
T ss_pred EEEeCCHH-HHHHhCCEEEEEeCCccccceec-chhHHHHhHHHHHH--hcchhh--h-hhc-c--ccCcc--eecCCCc
Confidence 99999986 4668899999997631 1 111 11111 1 1111 110000 0 000 0 00000 0000000
Q ss_pred hhHHHHHHHHHHHhcCcceecCCccccccccccCCCCCCCCCCCCcccccccceeeeeEEeCCCEEEEEcCCCCcHHHHH
Q psy8953 193 ALLFEKFDSLYALAKGHCIYRGSISRLVPHLASLGLPCPAYHNPADFLNKEILHGISGEFKAGQLTAIMGPSGAGKSTLL 272 (286)
Q Consensus 193 ~~l~~~~d~~~~l~~g~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl 272 (286)
..........++++.. . |.+ ..|+++||+|++||+++|+|+||||||||+
T Consensus 333 --------------------~~~~~~~~l~~~~ls~---~------~~~-~~l~~~s~~i~~Geiv~l~G~NGsGKSTLl 382 (590)
T PRK13409 333 --------------------DESERETLVEYPDLTK---K------LGD-FSLEVEGGEIYEGEVIGIVGPNGIGKTTFA 382 (590)
T ss_pred --------------------cccCCceEEEEcceEE---E------ECC-EEEEecceEECCCCEEEEECCCCCCHHHHH
Confidence 0000000111111111 1 112 248999999999999999999999999999
Q ss_pred HHHHcCCCCC
Q psy8953 273 NILAGLTYLN 282 (286)
Q Consensus 273 ~~l~GL~~~~ 282 (286)
|+|+|+++++
T Consensus 383 k~L~Gl~~p~ 392 (590)
T PRK13409 383 KLLAGVLKPD 392 (590)
T ss_pred HHHhCCCCCC
Confidence 9999999875
No 32
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.94 E-value=3.7e-27 Score=205.88 Aligned_cols=149 Identities=21% Similarity=0.253 Sum_probs=132.2
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
|||||.+ ||+... .+|+|+++|+++... .-.+|.+|||||+..+||++||+||++|+++++ ...+.+|+++||.
T Consensus 44 KTTlLR~IAGfe~p-~~G~I~l~G~~i~~l--pp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~--~~~~~~~i~~rv~ 118 (352)
T COG3842 44 KTTLLRMIAGFEQP-SSGEILLDGEDITDV--PPEKRPIGMVFQSYALFPHMTVEENVAFGLKVR--KKLKKAEIKARVE 118 (352)
T ss_pred HHHHHHHHhCCCCC-CCceEEECCEECCCC--ChhhcccceeecCcccCCCCcHHHHhhhhhhhc--CCCCHHHHHHHHH
Confidence 8999999 997655 799999999999875 345799999999999999999999999999942 3345677888877
Q ss_pred -------hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC-CCEEEEEEcCCC
Q psy8953 80 -------LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ-GRTVVATIHTPS 127 (286)
Q Consensus 80 -------l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~-g~tii~~~h~~~ 127 (286)
|. .++.+||||+| |.|.||..-+.++...|+++.++ |+|.|.++|+.+
T Consensus 119 e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqe 198 (352)
T COG3842 119 EALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQE 198 (352)
T ss_pred HHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHH
Confidence 22 67889999999 99999999999999999999886 999999999997
Q ss_pred HHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 128 ALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 128 ~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
+ ...+.|||++|++|+|.-.|+|+++.
T Consensus 199 E-Al~msDrI~Vm~~G~I~Q~gtP~eiY 225 (352)
T COG3842 199 E-ALAMSDRIAVMNDGRIEQVGTPEEIY 225 (352)
T ss_pred H-HhhhccceEEccCCceeecCCHHHHh
Confidence 5 56899999999999999999999986
No 33
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=2.9e-27 Score=198.65 Aligned_cols=151 Identities=19% Similarity=0.243 Sum_probs=131.4
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCe---ecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQ---ERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKD 76 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~---~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~ 76 (286)
|||||.+ ||+... ..|.|.+||. +.+. ...-.|.+|||||+..+|+++||.+||||+++.+ ...-++.+++.
T Consensus 41 KsTlLRiIAGLe~p-~~G~I~~~~~~l~D~~~--~~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~-~~~p~~~~~r~ 116 (345)
T COG1118 41 KSTLLRIIAGLETP-DAGRIRLNGRVLFDVSN--LAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVR-KERPSEAEIRA 116 (345)
T ss_pred HHHHHHHHhCcCCC-CCceEEECCEeccchhc--cchhhcceeEEEechhhcccchHHhhhhhccccc-ccCCChhhHHH
Confidence 8999999 997554 7899999999 5543 2344689999999999999999999999999876 23446777887
Q ss_pred HHh-------h---h--hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC-CCEEEEEEc
Q psy8953 77 QVS-------L---E--LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ-GRTVVATIH 124 (286)
Q Consensus 77 ~v~-------l---~--~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~-g~tii~~~h 124 (286)
||. | . ++..+|||||| |.+.||..-+.++.+-|+++.++ |.|.++++|
T Consensus 117 rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTH 196 (345)
T COG1118 117 RVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTH 196 (345)
T ss_pred HHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeC
Confidence 777 2 2 67789999999 99999999999999999999987 999999999
Q ss_pred CCCHHHHHHhhhHhhhcCCeeecccChhcHHH
Q psy8953 125 TPSALLFEKFDSLYALAKGHCIYRGSISRLVP 156 (286)
Q Consensus 125 ~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 156 (286)
+++ +.++.+|||++|++|+|.-.|++.++..
T Consensus 197 D~e-ea~~ladrvvvl~~G~Ieqvg~p~ev~~ 227 (345)
T COG1118 197 DQE-EALELADRVVVLNQGRIEQVGPPDEVYD 227 (345)
T ss_pred CHH-HHHhhcceEEEecCCeeeeeCCHHHHhc
Confidence 996 5779999999999999999999999874
No 34
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.94 E-value=1e-26 Score=189.34 Aligned_cols=152 Identities=23% Similarity=0.259 Sum_probs=131.2
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCch---hhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSA---CIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKD 76 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~---~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~ 76 (286)
|||||+. .|+... .+|+|+|+|+++... ...++++.+|++||+-.+|..+||+||++|.++-. ...+++++++
T Consensus 47 KStlLr~I~Gll~P-~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~--~~lp~~~i~~ 123 (263)
T COG1127 47 KSTLLRLILGLLRP-DKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREH--TKLPESLIRE 123 (263)
T ss_pred HHHHHHHHhccCCC-CCCeEEEcCcchhccCHHHHHHHHhheeEEeeccccccccchhHhhheehHhh--ccCCHHHHHH
Confidence 8999999 996544 799999999998653 22345789999999999999999999999999632 2356888887
Q ss_pred HHh------------hh-hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC-CCEEEEEE
Q psy8953 77 QVS------------LE-LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ-GRTVVATI 123 (286)
Q Consensus 77 ~v~------------l~-~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~-g~tii~~~ 123 (286)
.+. .+ ++..+|||.+| ||+||||.++..+.+++++|++. |.|+++++
T Consensus 124 lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VT 203 (263)
T COG1127 124 LVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVT 203 (263)
T ss_pred HHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEE
Confidence 765 12 56679999998 99999999999999999999997 99999999
Q ss_pred cCCCHHHHHHhhhHhhhcCCeeecccChhcHHH
Q psy8953 124 HTPSALLFEKFDSLYALAKGHCIYRGSISRLVP 156 (286)
Q Consensus 124 h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 156 (286)
|+.+ .++..+||++++.+|+|++.|+++++..
T Consensus 204 HDl~-s~~~i~Drv~~L~~gkv~~~Gt~~el~~ 235 (263)
T COG1127 204 HDLD-SLLTIADRVAVLADGKVIAEGTPEELLA 235 (263)
T ss_pred CChH-HHHhhhceEEEEeCCEEEEeCCHHHHHh
Confidence 9997 4779999999999999999999999864
No 35
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.94 E-value=7.3e-27 Score=182.24 Aligned_cols=147 Identities=23% Similarity=0.346 Sum_probs=125.1
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHh--cCCCCCCCHHHHHH-
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASH--LKLGFKVSTQEKKD- 76 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~--~~~~~~~~~~~~~~- 76 (286)
||||||+ ||+... .+|+|+|||++...+ .-..|=++++||+..+|.++||++++.++.. +|++ .+++++
T Consensus 38 KSTLLnLIAGF~~P-~~G~i~i~g~d~t~~--~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~LkL~----a~~r~~v 110 (231)
T COG3840 38 KSTLLNLIAGFETP-ASGEILINGVDHTAS--PPAERPVSMLFQENNLFAHLTVAQNIGLGLSPGLKLN----AEQREKV 110 (231)
T ss_pred HHHHHHHHHhccCC-CCceEEEcCeecCcC--CcccCChhhhhhccccchhhhhhhhhcccCCcccccC----HHHHHHH
Confidence 8999999 997654 799999999998764 2346889999999999999999999999987 5443 333322
Q ss_pred -----HHhh----h-hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC-CCEEEEEEcCC
Q psy8953 77 -----QVSL----E-LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ-GRTVVATIHTP 126 (286)
Q Consensus 77 -----~v~l----~-~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~-g~tii~~~h~~ 126 (286)
+|.| . .+.++|||||| |.|.|||.-+.+.+.++.++..+ ++|+++++|+|
T Consensus 111 ~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~ 190 (231)
T COG3840 111 EAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHP 190 (231)
T ss_pred HHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCH
Confidence 2323 3 67889999999 99999999999999999999885 99999999999
Q ss_pred CHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 127 SALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 127 ~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
++ ....+|+++++++|||.+.|+..+++
T Consensus 191 ~D-a~~ia~~~~fl~~Gri~~~g~~~~~~ 218 (231)
T COG3840 191 ED-AARIADRVVFLDNGRIAAQGSTQELL 218 (231)
T ss_pred HH-HHHhhhceEEEeCCEEEeeccHHHHh
Confidence 86 66889999999999999999987765
No 36
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.94 E-value=8.3e-26 Score=204.28 Aligned_cols=228 Identities=19% Similarity=0.266 Sum_probs=165.9
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCch-hhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCC-CCCCCHHHHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSA-CIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKL-GFKVSTQEKKDQ 77 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~-~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~-~~~~~~~~~~~~ 77 (286)
||||+++ +|-.+ ..+|+|++||++..-. +......-++.|+|+..++|++||.|||.++-+.+- ..-+++.+++++
T Consensus 47 KSTLmKiLsGv~~-p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~ 125 (500)
T COG1129 47 KSTLMKILSGVYP-PDSGEILIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRR 125 (500)
T ss_pred HHHHHHHHhCccc-CCCceEEECCEEccCCCHHHHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHH
Confidence 8999999 99544 3799999999999743 334446899999999999999999999999988543 133677777776
Q ss_pred Hh--hh----------hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcCC
Q psy8953 78 VS--LE----------LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVATIHTP 126 (286)
Q Consensus 78 v~--l~----------~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~~ 126 (286)
.. |. ...++++|||| |||.|+..-+..+++++++|+++|++||.+.|+.
T Consensus 126 A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl 205 (500)
T COG1129 126 ARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRL 205 (500)
T ss_pred HHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcH
Confidence 65 22 22346789999 9999999999999999999999999999999999
Q ss_pred CHHHHHHhhhHhhhcCCeeecccCh-hcHHH-HH-HhC-CCCCCCCCCCCCccccccCCceeeeeccCchhhHHHHHHHH
Q psy8953 127 SALLFEKFDSLYALAKGHCIYRGSI-SRLVP-HL-ASL-GLPCPAYHNPADFPNLAKQGRTVVATIHTPSALLFEKFDSL 202 (286)
Q Consensus 127 ~~~~~~~~d~v~~l~~G~i~~~g~~-~~~~~-~~-~~~-g~~~p~~~~~~~~~~~~~~g~tii~~~h~p~~~l~~~~d~~ 202 (286)
+ ++++.|||+.||.+|+++.+.+. .+.-. .+ ..+ |=..... ++. .
T Consensus 206 ~-Ei~~i~DritVlRDG~~v~~~~~~~~~~~~~lv~~MvGr~~~~~-----~~~-~------------------------ 254 (500)
T COG1129 206 D-EVFEIADRITVLRDGRVVGTRPTAAETSEDELVRLMVGRELEDL-----FPE-P------------------------ 254 (500)
T ss_pred H-HHHHhcCEEEEEeCCEEeeecccccCCCHHHHHHHhhCcchhhh-----ccc-c------------------------
Confidence 6 58899999999999999988773 33311 11 000 0000000 000 0
Q ss_pred HHHhcCcceecCCccccccccccCCCCCCCCCCCCcccccccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 203 YALAKGHCIYRGSISRLVPHLASLGLPCPAYHNPADFLNKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 203 ~~l~~g~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
......+....++.+. ....++|+||++++||+++|.|==|||+|=|++.|.|+.++.
T Consensus 255 ---------~~~~~~~~~l~v~~l~-------------~~~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~ 312 (500)
T COG1129 255 ---------PEEGIGEPVLEVRNLS-------------GGGKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPAS 312 (500)
T ss_pred ---------cccCCCCcEEEEecCC-------------CCCceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCC
Confidence 0000000011111111 112488999999999999999999999999999999977653
No 37
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.93 E-value=1.9e-26 Score=200.43 Aligned_cols=155 Identities=25% Similarity=0.297 Sum_probs=127.7
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCC-CCHHHHHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFK-VSTQEKKDQV 78 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~-~~~~~~~~~v 78 (286)
|||||++ +|+... .+|+|.++|++.... ...+++.+|||+|+|.+++.+||+|+|.|.+.++.+.. ..++.+.+.+
T Consensus 44 KTTllk~l~gl~~p-~~G~i~i~G~~~~~~-~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l 121 (293)
T COG1131 44 KTTLLKILAGLLKP-TSGEILVLGYDVVKE-PAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELL 121 (293)
T ss_pred HHHHHHHHhCCcCC-CceEEEEcCEeCccC-HHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 8999999 997655 899999999998652 35677899999999999999999999999999866432 1122233333
Q ss_pred h---hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCC-CEEEEEEcCCCHHH
Q psy8953 79 S---LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQG-RTVVATIHTPSALL 130 (286)
Q Consensus 79 ~---l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g-~tii~~~h~~~~~~ 130 (286)
+ |. ....+|+|||| ||+||||.++.+++++|++++++| +||++++|.+++ +
T Consensus 122 ~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e-~ 200 (293)
T COG1131 122 ELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEE-A 200 (293)
T ss_pred HHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHH-H
Confidence 3 33 13458899999 999999999999999999999986 899999999975 6
Q ss_pred HHHhhhHhhhcCCeeecccChhcHHHHH
Q psy8953 131 FEKFDSLYALAKGHCIYRGSISRLVPHL 158 (286)
Q Consensus 131 ~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 158 (286)
...||+|++|++|++++.|+++++...+
T Consensus 201 ~~~~d~v~il~~G~~~~~g~~~~l~~~~ 228 (293)
T COG1131 201 EELCDRVIILNDGKIIAEGTPEELKEKF 228 (293)
T ss_pred HHhCCEEEEEeCCEEEEeCCHHHHHHhh
Confidence 6789999999999999999988866543
No 38
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.93 E-value=1.9e-26 Score=181.20 Aligned_cols=146 Identities=23% Similarity=0.257 Sum_probs=126.5
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCch---hhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSA---CIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKD 76 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~---~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~ 76 (286)
|||||+. .+. ....+|+|++||++++.. ++.-+++.+|+||||..+++..||.|++||+++. .+.++.++++
T Consensus 41 KSTllkLi~~~-e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v---~G~~~~~i~~ 116 (223)
T COG2884 41 KSTLLKLIYGE-ERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRV---IGKPPREIRR 116 (223)
T ss_pred HHHHHHHHHhh-hcCCCceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhhhhc---cCCCHHHHHH
Confidence 8999999 773 223799999999999753 3445589999999999999999999999999996 5678999999
Q ss_pred HHh-------hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcC
Q psy8953 77 QVS-------LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVATIHT 125 (286)
Q Consensus 77 ~v~-------l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~ 125 (286)
||. |. .+..+||||+| ||-+|||..+.++++++.++++.|+||++++|+
T Consensus 117 rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd 196 (223)
T COG2884 117 RVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHD 196 (223)
T ss_pred HHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEecc
Confidence 887 22 56789999999 999999999999999999999999999999999
Q ss_pred CCHHHHHHhhhHhhhcCCeeecccCh
Q psy8953 126 PSALLFEKFDSLYALAKGHCIYRGSI 151 (286)
Q Consensus 126 ~~~~~~~~~d~v~~l~~G~i~~~g~~ 151 (286)
.. .+..+-.|++.+++|+++.+...
T Consensus 197 ~~-lv~~~~~rvl~l~~Grl~~d~~~ 221 (223)
T COG2884 197 LE-LVNRMRHRVLALEDGRLVRDESR 221 (223)
T ss_pred HH-HHHhccCcEEEEeCCEEEecccc
Confidence 74 56677779999999999987543
No 39
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.93 E-value=8.3e-26 Score=183.55 Aligned_cols=154 Identities=22% Similarity=0.328 Sum_probs=129.2
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCc---hhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCC-----CC-CC
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKS---ACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLG-----FK-VS 70 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~---~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~-----~~-~~ 70 (286)
|||||.+ +|+... .+|+|++||.++.. ...+++++.+||+||++.+.+.++|.+++..+.-.+.+ .+ .+
T Consensus 43 KSTLLR~lngl~d~-t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfs 121 (258)
T COG3638 43 KSTLLRSLNGLVDP-TSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFS 121 (258)
T ss_pred HHHHHHHHhcccCC-CcceEEecccchhccchHHHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCC
Confidence 8999999 995544 78999999988754 34677889999999999999999999999987654433 12 34
Q ss_pred HHHHHHHHh-------hh----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC-CCEE
Q psy8953 71 TQEKKDQVS-------LE----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ-GRTV 119 (286)
Q Consensus 71 ~~~~~~~v~-------l~----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~-g~ti 119 (286)
.+++..-++ ++ ..+++||||+| |++.|||.++..+|..|++++++ |+|+
T Consensus 122 k~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tv 201 (258)
T COG3638 122 KEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITV 201 (258)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEE
Confidence 666654433 22 56789999999 99999999999999999999985 9999
Q ss_pred EEEEcCCCHHHHHHhhhHhhhcCCeeecccChhcHHH
Q psy8953 120 VATIHTPSALLFEKFDSLYALAKGHCIYRGSISRLVP 156 (286)
Q Consensus 120 i~~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 156 (286)
|+..|+.+ ....+|||++-|++|+|+|+|++.++-.
T Consensus 202 i~nLH~vd-lA~~Y~~Riigl~~G~ivfDg~~~el~~ 237 (258)
T COG3638 202 IVNLHQVD-LAKKYADRIIGLKAGRIVFDGPASELTD 237 (258)
T ss_pred EEEechHH-HHHHHHhhheEecCCcEEEeCChhhhhH
Confidence 99999996 4679999999999999999999988653
No 40
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.93 E-value=5.7e-25 Score=210.59 Aligned_cols=185 Identities=15% Similarity=0.243 Sum_probs=104.7
Q ss_pred hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHhhhHhhhcC
Q psy8953 82 LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVATIHTPSALLFEKFDSLYALAK 142 (286)
Q Consensus 82 ~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~~~~~~~~~~d~v~~l~~ 142 (286)
...++|||||| ||++||+.++..+.++|+++. .|||+++|+.. .+...+|++++|++
T Consensus 153 ~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~---~tvlivsHd~~-~l~~~~d~i~~L~~ 228 (635)
T PRK11147 153 ALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQ---GSIIFISHDRS-FIRNMATRIVDLDR 228 (635)
T ss_pred chhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCC---CEEEEEeCCHH-HHHHhcCeEEEEEC
Confidence 34678999999 999999999999999999873 49999999986 46688999999999
Q ss_pred Ceee-cccChhcHHHHHHhC-CCCCCCCCC---C-CCccccccCCceeeeeccCchhhHHHHHHHHH--HHhc----C--
Q psy8953 143 GHCI-YRGSISRLVPHLASL-GLPCPAYHN---P-ADFPNLAKQGRTVVATIHTPSALLFEKFDSLY--ALAK----G-- 208 (286)
Q Consensus 143 G~i~-~~g~~~~~~~~~~~~-g~~~p~~~~---~-~~~~~~~~~g~tii~~~h~p~~~l~~~~d~~~--~l~~----g-- 208 (286)
|+++ |.|...+.....+.. -.....+.. . .....+...+... ..+..... ....+.+. .... .
T Consensus 229 G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a--~~~~~~~r-~~~~~~~~~~~~~~~~~~~~~ 305 (635)
T PRK11147 229 GKLVSYPGNYDQYLLEKEEALRVEELQNAEFDRKLAQEEVWIRQGIKA--RRTRNEGR-VRALKALRRERSERREVMGTA 305 (635)
T ss_pred CEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh--hhhhHHHH-HHHHHHhhhhhccccccCCce
Confidence 9997 567765543211000 000000000 0 0000000000000 00000000 00111110 0000 0
Q ss_pred cceecCC--ccccccccccCCCCCCCCCCCCcccccccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 209 HCIYRGS--ISRLVPHLASLGLPCPAYHNPADFLNKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 209 ~~~~~g~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
+..+... .......++++.. .|.++.+++++||+|.+||+++|+|+||||||||+|+|+|+++++
T Consensus 306 ~~~~~~~~~~~~~~l~~~~l~~---------~~~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~ 372 (635)
T PRK11147 306 KMQVEEASRSGKIVFEMENVNY---------QIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQAD 372 (635)
T ss_pred eEEeCCCCCCCCceEEEeeeEE---------EECCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC
Confidence 0000000 0000111111111 133456899999999999999999999999999999999999875
No 41
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.93 E-value=9e-26 Score=185.61 Aligned_cols=139 Identities=25% Similarity=0.362 Sum_probs=114.1
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhh---hcc-cceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACI---EQF-LKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKK 75 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~---~~~-~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~ 75 (286)
||||||+ +|+... .+|.|+++|+++...+- ..+ ++.+|||||+..++|++||.|++...+.+.. .+..+++
T Consensus 44 KSTLLniig~ld~p-t~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~---~~~~~~~ 119 (226)
T COG1136 44 KSTLLNLLGGLDKP-TSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAG---KSAGRRK 119 (226)
T ss_pred HHHHHHHHhcccCC-CCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcC---CChhHHH
Confidence 8999999 987655 89999999999875432 223 4789999999999999999999999887533 2332333
Q ss_pred HHHh-------hh------hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC-CCEEEEE
Q psy8953 76 DQVS-------LE------LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ-GRTVVAT 122 (286)
Q Consensus 76 ~~v~-------l~------~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~-g~tii~~ 122 (286)
+++. |. .++.+||||+| ||.+||+.++.++++++++++++ |+|||++
T Consensus 120 ~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~V 199 (226)
T COG1136 120 RAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMV 199 (226)
T ss_pred HHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 3322 32 35679999999 99999999999999999999986 9999999
Q ss_pred EcCCCHHHHHHhhhHhhhcCCee
Q psy8953 123 IHTPSALLFEKFDSLYALAKGHC 145 (286)
Q Consensus 123 ~h~~~~~~~~~~d~v~~l~~G~i 145 (286)
+|++. ++..+||++.|.+|++
T Consensus 200 THd~~--lA~~~dr~i~l~dG~~ 220 (226)
T COG1136 200 THDPE--LAKYADRVIELKDGKI 220 (226)
T ss_pred cCCHH--HHHhCCEEEEEeCCee
Confidence 99974 6789999999999984
No 42
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1.2e-25 Score=200.35 Aligned_cols=149 Identities=17% Similarity=0.179 Sum_probs=125.9
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
|||||++ +|+.+. .+|+|++||+++...+. .++.+|||||++.+||++||+|+++|+++.+ ..+.+++.+++.
T Consensus 43 KSTLLr~iaGl~~p-~~G~I~~~g~~i~~~~~--~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~ 116 (356)
T PRK11650 43 KSTLLRMVAGLERI-TSGEIWIGGRVVNELEP--ADRDIAMVFQNYALYPHMSVRENMAYGLKIR---GMPKAEIEERVA 116 (356)
T ss_pred HHHHHHHHHCCCCC-CceEEEECCEECCCCCH--HHCCEEEEeCCccccCCCCHHHHHHhHHhhc---CCCHHHHHHHHH
Confidence 8999999 997554 78999999999865322 3478999999999999999999999998742 234555555444
Q ss_pred -------hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC-CCEEEEEEcCCC
Q psy8953 80 -------LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ-GRTVVATIHTPS 127 (286)
Q Consensus 80 -------l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~-g~tii~~~h~~~ 127 (286)
|. ..+.+||||+| ||++||+.++.++.+.|+++.++ |+|+|+++|+++
T Consensus 117 ~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ 196 (356)
T PRK11650 117 EAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQV 196 (356)
T ss_pred HHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 22 55679999999 99999999999999999999886 999999999986
Q ss_pred HHHHHHhhhHhhhcCCeeecccChhcHHH
Q psy8953 128 ALLFEKFDSLYALAKGHCIYRGSISRLVP 156 (286)
Q Consensus 128 ~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 156 (286)
++..++|++++|++|+++..|+++++..
T Consensus 197 -ea~~l~D~i~vl~~G~i~~~g~~~~~~~ 224 (356)
T PRK11650 197 -EAMTLADRVVVMNGGVAEQIGTPVEVYE 224 (356)
T ss_pred -HHHHhCCEEEEEeCCEEEEECCHHHHHh
Confidence 4678999999999999999999988753
No 43
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=6.4e-26 Score=216.79 Aligned_cols=68 Identities=16% Similarity=0.194 Sum_probs=57.9
Q ss_pred hhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHhhhHhhhcCC
Q psy8953 83 WNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVATIHTPSALLFEKFDSLYALAKG 143 (286)
Q Consensus 83 ~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~~~~~~~~~~d~v~~l~~G 143 (286)
..++|||||| ||++||+.++..+.+.|+++ +.|||+++|+.+ .+...+|++++|++|
T Consensus 147 ~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~---~~tviivsHd~~-~l~~~~d~i~~L~~G 222 (638)
T PRK10636 147 VSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY---QGTLILISHDRD-FLDPIVDKIIHIEQQ 222 (638)
T ss_pred hhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC---CCeEEEEeCCHH-HHHHhcCEEEEEeCC
Confidence 3568999999 99999999999999988876 569999999986 466889999999999
Q ss_pred eee-cccChhcH
Q psy8953 144 HCI-YRGSISRL 154 (286)
Q Consensus 144 ~i~-~~g~~~~~ 154 (286)
++. |.|.....
T Consensus 223 ~i~~~~g~~~~~ 234 (638)
T PRK10636 223 SLFEYTGNYSSF 234 (638)
T ss_pred EEEEecCCHHHH
Confidence 996 67765544
No 44
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.93 E-value=3.3e-26 Score=191.80 Aligned_cols=163 Identities=21% Similarity=0.320 Sum_probs=133.1
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCC--CCCCHHHHH--
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLG--FKVSTQEKK-- 75 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~--~~~~~~~~~-- 75 (286)
|||||++ +|..+. .+|+|+++|+++.+.+.+++++.+|||+|.+...+.+||+|-+.++-.-..+ ...++++.+
T Consensus 41 KSTLLk~l~g~l~p-~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v 119 (258)
T COG1120 41 KSTLLKCLAGLLKP-KSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIV 119 (258)
T ss_pred HHHHHHHHhccCCC-CCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHH
Confidence 8999999 996543 7999999999999888899999999999999999999999999998542221 122333332
Q ss_pred -HHHh------hh--hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC-CCEEEEEEcCC
Q psy8953 76 -DQVS------LE--LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ-GRTVVATIHTP 126 (286)
Q Consensus 76 -~~v~------l~--~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~-g~tii~~~h~~ 126 (286)
+-++ +. ..+++|||||| ||+.||...+.++++++++++++ |+|||++.|++
T Consensus 120 ~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDl 199 (258)
T COG1120 120 EEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDL 199 (258)
T ss_pred HHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 1122 22 55789999999 99999999999999999999965 99999999999
Q ss_pred CHHHHHHhhhHhhhcCCeeecccChhcHHH--H-HHhCCCCC
Q psy8953 127 SALLFEKFDSLYALAKGHCIYRGSISRLVP--H-LASLGLPC 165 (286)
Q Consensus 127 ~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~--~-~~~~g~~~ 165 (286)
. ..+.+||++++|++|++++.|+|++++. . .+-+|+.+
T Consensus 200 N-~A~ryad~~i~lk~G~i~a~G~p~evlT~e~l~~Vygv~~ 240 (258)
T COG1120 200 N-LAARYADHLILLKDGKIVAQGTPEEVLTEENLREVYGVDA 240 (258)
T ss_pred H-HHHHhCCEEEEEECCeEEeecCcchhcCHHHHHHHhCCce
Confidence 6 5678999999999999999999998862 2 33356653
No 45
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.93 E-value=1.5e-25 Score=199.54 Aligned_cols=150 Identities=17% Similarity=0.226 Sum_probs=127.7
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcc----cceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQF----LKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKK 75 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~----~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~ 75 (286)
|||||++ +|+.+. .+|+|+++|+++...+...+ ++.+|||+|++.+|+++||+|+++|+.++ .+.+++++.
T Consensus 32 KSTLLr~L~Gl~~p-~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~TV~eNi~~~~~~---~~~~~~~~~ 107 (363)
T TIGR01186 32 KSTTVRMLNRLIEP-TAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHMTILQNTSLGPEL---LGWPEQERK 107 (363)
T ss_pred HHHHHHHHhCCCCC-CceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCCCHHHHHHHHHHH---cCCCHHHHH
Confidence 8999999 997654 79999999999876444444 67999999999999999999999999875 234565555
Q ss_pred HHHh-------hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC-CCEEEEEE
Q psy8953 76 DQVS-------LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ-GRTVVATI 123 (286)
Q Consensus 76 ~~v~-------l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~-g~tii~~~ 123 (286)
+++. |. ....+||||+| |+++||+.++.++.+.|.+++++ |+|||+++
T Consensus 108 ~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vT 187 (363)
T TIGR01186 108 EKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFIT 187 (363)
T ss_pred HHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 5544 22 55679999999 99999999999999999999875 99999999
Q ss_pred cCCCHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 124 HTPSALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 124 h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
|+.++ +..++|++++|++|+++..|+++++.
T Consensus 188 Hd~~e-a~~~~drI~vl~~G~iv~~g~~~ei~ 218 (363)
T TIGR01186 188 HDLDE-AIRIGDRIVIMKAGEIVQVGTPDEIL 218 (363)
T ss_pred CCHHH-HHHhCCEEEEEeCCEEEeeCCHHHHH
Confidence 99964 66889999999999999999998875
No 46
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.93 E-value=1.2e-25 Score=200.44 Aligned_cols=149 Identities=16% Similarity=0.195 Sum_probs=125.7
Q ss_pred Cchhhhh-cCCCCCCce--eEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHH
Q psy8953 1 MSIELNV-QSIRLTGSS--GKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQ 77 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~--G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~ 77 (286)
|||||++ +|+.+. .+ |+|.++|+++... ...++.+|||||++.+|+.+||+|+++|+++.+ ..+.++++++
T Consensus 44 KSTLLr~iaGl~~p-~~~~G~i~~~g~~~~~~--~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~---~~~~~~~~~~ 117 (362)
T TIGR03258 44 KTTLLRAIAGFVKA-AGLTGRIAIADRDLTHA--PPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQ---KMPKADIAER 117 (362)
T ss_pred HHHHHHHHhCCCCC-CCCCEEEEECCEECCCC--CHHHCCEEEEECCcccCCCCcHHHHHHHHHHHc---CCCHHHHHHH
Confidence 8999999 997543 45 9999999998643 223578999999999999999999999998742 3456666555
Q ss_pred Hh-------h----h-hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC--CCEEEEEEc
Q psy8953 78 VS-------L----E-LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ--GRTVVATIH 124 (286)
Q Consensus 78 v~-------l----~-~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~--g~tii~~~h 124 (286)
+. | . ..+.+|||||| |+++||+..+.++.+.|+++.++ |+|+|+++|
T Consensus 118 v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTH 197 (362)
T TIGR03258 118 VADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTH 197 (362)
T ss_pred HHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 54 2 2 55679999999 99999999999999999999886 899999999
Q ss_pred CCCHHHHHHhhhHhhhcCCeeecccChhcHHH
Q psy8953 125 TPSALLFEKFDSLYALAKGHCIYRGSISRLVP 156 (286)
Q Consensus 125 ~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 156 (286)
++++ +..++||+++|++|+++..|+++++..
T Consensus 198 d~~e-a~~l~dri~vl~~G~i~~~g~~~~~~~ 228 (362)
T TIGR03258 198 DQDD-ALTLADKAGIMKDGRLAAHGEPQALYD 228 (362)
T ss_pred CHHH-HHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9864 678899999999999999999998863
No 47
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.93 E-value=1.2e-25 Score=200.08 Aligned_cols=149 Identities=15% Similarity=0.186 Sum_probs=126.7
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
|||||++ +|+.+. .+|+|.++|+++... ...++.+|||||++.+||++||+|+++|+++. ...+.++.+++++
T Consensus 43 KSTLLr~iaGl~~p-~~G~I~i~g~~~~~~--~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~---~~~~~~~~~~~~~ 116 (353)
T TIGR03265 43 KTTLLRIIAGLERQ-TAGTIYQGGRDITRL--PPQKRDYGIVFQSYALFPNLTVADNIAYGLKN---RGMGRAEVAERVA 116 (353)
T ss_pred HHHHHHHHHCCCCC-CceEEEECCEECCCC--CHHHCCEEEEeCCcccCCCCcHHHHHHHHHHh---cCCCHHHHHHHHH
Confidence 8999999 997554 789999999998653 22357899999999999999999999999874 2345566555554
Q ss_pred -------h----h-hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC-CCEEEEEEcCCC
Q psy8953 80 -------L----E-LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ-GRTVVATIHTPS 127 (286)
Q Consensus 80 -------l----~-~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~-g~tii~~~h~~~ 127 (286)
| . ....+||||+| |+++||+..+.++...|+++.++ |+|+|+++|+++
T Consensus 117 ~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ 196 (353)
T TIGR03265 117 ELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQE 196 (353)
T ss_pred HHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH
Confidence 2 2 55679999999 99999999999999999999886 999999999996
Q ss_pred HHHHHHhhhHhhhcCCeeecccChhcHHH
Q psy8953 128 ALLFEKFDSLYALAKGHCIYRGSISRLVP 156 (286)
Q Consensus 128 ~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 156 (286)
++..++||+++|++|+++..|+++++..
T Consensus 197 -ea~~l~d~i~vl~~G~i~~~g~~~~~~~ 224 (353)
T TIGR03265 197 -EALSMADRIVVMNHGVIEQVGTPQEIYR 224 (353)
T ss_pred -HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 4678999999999999999999988763
No 48
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=1.4e-25 Score=199.39 Aligned_cols=148 Identities=20% Similarity=0.294 Sum_probs=126.6
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
|||||++ +|+.+. .+|+|++||+++...+ ..++.+|||||++.+||++||+|+++|+++.+ +.+.+++++++.
T Consensus 45 KSTLLr~IaGl~~p-~~G~I~~~g~~i~~~~--~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~---~~~~~~~~~~v~ 118 (351)
T PRK11432 45 KTTVLRLVAGLEKP-TEGQIFIDGEDVTHRS--IQQRDICMVFQSYALFPHMSLGENVGYGLKML---GVPKEERKQRVK 118 (351)
T ss_pred HHHHHHHHHCCCCC-CceEEEECCEECCCCC--HHHCCEEEEeCCcccCCCCCHHHHHHHHHhHc---CCCHHHHHHHHH
Confidence 8999999 997654 7999999999986532 23588999999999999999999999998752 345566655554
Q ss_pred -------h----h-hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC-CCEEEEEEcCCC
Q psy8953 80 -------L----E-LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ-GRTVVATIHTPS 127 (286)
Q Consensus 80 -------l----~-~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~-g~tii~~~h~~~ 127 (286)
+ . ....+||||+| |+++||+..+.++...|+++.++ |+|+|+++|+++
T Consensus 119 ~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ 198 (351)
T PRK11432 119 EALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQS 198 (351)
T ss_pred HHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH
Confidence 2 2 56779999999 99999999999999999999876 999999999996
Q ss_pred HHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 128 ALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 128 ~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
+ +..++|++++|++|+++..|+++++.
T Consensus 199 e-~~~laD~i~vm~~G~i~~~g~~~~~~ 225 (351)
T PRK11432 199 E-AFAVSDTVIVMNKGKIMQIGSPQELY 225 (351)
T ss_pred H-HHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 4 66889999999999999999998875
No 49
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.92 E-value=2.1e-25 Score=197.40 Aligned_cols=150 Identities=20% Similarity=0.298 Sum_probs=125.5
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchh---hhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSAC---IEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKD 76 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~---~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~ 76 (286)
||||+++ +|+.+. .+|+|+++|+++...+ .+..++.+|||||++.+++..||.|+++|..++. +.+.+++++
T Consensus 44 KSTLlr~I~gl~~p-~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~ 119 (343)
T TIGR02314 44 KSTLIRCVNLLERP-TSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEIKR 119 (343)
T ss_pred HHHHHHHHhcCCCC-CceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHHc---CCCHHHHHH
Confidence 8999999 997654 6899999999986532 2234678999999999999999999999998742 234555555
Q ss_pred HHh-------hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC-CCEEEEEEc
Q psy8953 77 QVS-------LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ-GRTVVATIH 124 (286)
Q Consensus 77 ~v~-------l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~-g~tii~~~h 124 (286)
++. |. ....+|||||| ||++||+.++.+++++|++++++ |+|||+++|
T Consensus 120 ~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH 199 (343)
T TIGR02314 120 KVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITH 199 (343)
T ss_pred HHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 544 22 45679999999 99999999999999999999886 999999999
Q ss_pred CCCHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 125 TPSALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 125 ~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
+++ .+..+||++++|++|+++..|++++++
T Consensus 200 ~~~-~v~~~~d~v~vl~~G~iv~~g~~~~v~ 229 (343)
T TIGR02314 200 EMD-VVKRICDCVAVISNGELIEQGTVSEIF 229 (343)
T ss_pred CHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 986 466889999999999999999988775
No 50
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.92 E-value=2.9e-25 Score=198.74 Aligned_cols=149 Identities=19% Similarity=0.227 Sum_probs=125.7
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
|||||++ +|+.+. .+|+|.++|+++... ...++.+|||||++.+||.+||.|+|+|+++.+ +.+..+++++++
T Consensus 53 KSTLLr~IaGl~~p-~~G~I~~~g~~i~~~--~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~~~ 126 (375)
T PRK09452 53 KTTVLRLIAGFETP-DSGRIMLDGQDITHV--PAENRHVNTVFQSYALFPHMTVFENVAFGLRMQ---KTPAAEITPRVM 126 (375)
T ss_pred HHHHHHHHhCCCCC-CceEEEECCEECCCC--CHHHCCEEEEecCcccCCCCCHHHHHHHHHhhc---CCCHHHHHHHHH
Confidence 8999999 997654 789999999998653 223578999999999999999999999998742 334555554444
Q ss_pred -------h----h-hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC-CCEEEEEEcCCC
Q psy8953 80 -------L----E-LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ-GRTVVATIHTPS 127 (286)
Q Consensus 80 -------l----~-~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~-g~tii~~~h~~~ 127 (286)
+ . ....+||||+| |+++||+..+.++...|++++++ |+|+|+++|+++
T Consensus 127 ~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ 206 (375)
T PRK09452 127 EALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQE 206 (375)
T ss_pred HHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 2 2 55679999999 99999999999999999999885 999999999986
Q ss_pred HHHHHHhhhHhhhcCCeeecccChhcHHH
Q psy8953 128 ALLFEKFDSLYALAKGHCIYRGSISRLVP 156 (286)
Q Consensus 128 ~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 156 (286)
++..++|++++|++|+++..|+++++..
T Consensus 207 -ea~~laDri~vl~~G~i~~~g~~~~i~~ 234 (375)
T PRK09452 207 -EALTMSDRIVVMRDGRIEQDGTPREIYE 234 (375)
T ss_pred -HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 4678899999999999999999988763
No 51
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=3.2e-25 Score=198.76 Aligned_cols=149 Identities=15% Similarity=0.225 Sum_probs=126.4
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
|||||++ +|+.+. .+|+|+++|+++... ...++.+|||||++.+|+++||+|+|+|+++.+ ..+.++.++++.
T Consensus 58 KSTLLr~IaGl~~p-~~G~I~i~g~~i~~~--~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~v~ 131 (377)
T PRK11607 58 KSTLLRMLAGFEQP-TAGQIMLDGVDLSHV--PPYQRPINMMFQSYALFPHMTVEQNIAFGLKQD---KLPKAEIASRVN 131 (377)
T ss_pred HHHHHHHHhCCCCC-CceEEEECCEECCCC--CHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHH
Confidence 8999999 997654 689999999998643 234688999999999999999999999998742 335666665554
Q ss_pred -------h----h-hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC-CCEEEEEEcCCC
Q psy8953 80 -------L----E-LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ-GRTVVATIHTPS 127 (286)
Q Consensus 80 -------l----~-~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~-g~tii~~~h~~~ 127 (286)
+ . ....+||||+| |+++||+..+.++...|+++.++ |+|+|+++|+++
T Consensus 132 ~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ 211 (377)
T PRK11607 132 EMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQE 211 (377)
T ss_pred HHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH
Confidence 2 2 45679999999 99999999999999999999775 999999999986
Q ss_pred HHHHHHhhhHhhhcCCeeecccChhcHHH
Q psy8953 128 ALLFEKFDSLYALAKGHCIYRGSISRLVP 156 (286)
Q Consensus 128 ~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 156 (286)
++..++|++++|++|+++..|+++++..
T Consensus 212 -ea~~laDri~vl~~G~i~~~g~~~~~~~ 239 (377)
T PRK11607 212 -EAMTMAGRIAIMNRGKFVQIGEPEEIYE 239 (377)
T ss_pred -HHHHhCCEEEEEeCCEEEEEcCHHHHHh
Confidence 4678999999999999999999988763
No 52
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=5.7e-25 Score=191.38 Aligned_cols=162 Identities=21% Similarity=0.215 Sum_probs=128.5
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCc----hhhhcccceeeEEecCcc-cCCCCCHHHHHHHHHhcCCCCCCCHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKS----ACIEQFLKLSCYIQQDDA-LRPKLTVTEAMMIASHLKLGFKVSTQEK 74 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~----~~~~~~~~~~g~v~Q~~~-~~~~~tV~e~l~f~~~~~~~~~~~~~~~ 74 (286)
||||+++ +|..+. .+|+|+++|.++.. .....+++.+|||+|+|. ++...||.|+++|+++. .+.+.+++
T Consensus 45 KSTLl~~l~Gl~~p-~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~---~~~~~~~~ 120 (288)
T PRK13643 45 KSTLLQHLNGLLQP-TEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQN---FGIPKEKA 120 (288)
T ss_pred HHHHHHHHhcCCCC-CCcEEEECCEECccccccccHHHHHhhEEEEecCcchhcccchHHHHHHhHHHH---cCCCHHHH
Confidence 8999999 997543 79999999998742 122446788999999984 55557999999999874 23355555
Q ss_pred HHHHh-------hh------hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEE
Q psy8953 75 KDQVS-------LE------LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVAT 122 (286)
Q Consensus 75 ~~~v~-------l~------~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~ 122 (286)
++++. |. ....+|||||| ||++||+.++..++++|++++++|+|||++
T Consensus 121 ~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~v 200 (288)
T PRK13643 121 EKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLV 200 (288)
T ss_pred HHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 55544 21 33558899999 999999999999999999998789999999
Q ss_pred EcCCCHHHHHHhhhHhhhcCCeeecccChhcHHH---HHHhCCCCCCC
Q psy8953 123 IHTPSALLFEKFDSLYALAKGHCIYRGSISRLVP---HLASLGLPCPA 167 (286)
Q Consensus 123 ~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~---~~~~~g~~~p~ 167 (286)
+|+++ .+..++||+++|++|++++.|++++++. .+...|+.+|.
T Consensus 201 tHd~~-~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~ 247 (288)
T PRK13643 201 THLMD-DVADYADYVYLLEKGHIISCGTPSDVFQEVDFLKAHELGVPK 247 (288)
T ss_pred ecCHH-HHHHhCCEEEEEECCEEEEECCHHHHHcCHHHHHHcCCCCCh
Confidence 99986 4668899999999999999999998763 34556665443
No 53
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.92 E-value=5.1e-25 Score=193.04 Aligned_cols=150 Identities=21% Similarity=0.260 Sum_probs=124.3
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
||||+++ +|..+. .+|+|+++|+++.... ...++.+|||+|++.+++.+||+|++.|.+.+. +.+..+..+++.
T Consensus 46 KSTLl~~l~Gl~~p-~~G~v~i~G~~~~~~~-~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~ 120 (306)
T PRK13537 46 KTTTLRMLLGLTHP-DAGSISLCGEPVPSRA-RHARQRVGVVPQFDNLDPDFTVRENLLVFGRYF---GLSAAAARALVP 120 (306)
T ss_pred HHHHHHHHhcCCCC-CceEEEECCEecccch-HHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHH
Confidence 8999999 997544 7899999999986432 245688999999999999999999999877642 233444443332
Q ss_pred -------hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcCCCH
Q psy8953 80 -------LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVATIHTPSA 128 (286)
Q Consensus 80 -------l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~~~~ 128 (286)
+. ....+|||||| ||+|||+.++.+++++|++++++|+|||+++|+++
T Consensus 121 ~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~- 199 (306)
T PRK13537 121 PLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFME- 199 (306)
T ss_pred HHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-
Confidence 22 33568899999 99999999999999999999878999999999996
Q ss_pred HHHHHhhhHhhhcCCeeecccChhcHHH
Q psy8953 129 LLFEKFDSLYALAKGHCIYRGSISRLVP 156 (286)
Q Consensus 129 ~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 156 (286)
++..+|||+++|++|++++.|+++++..
T Consensus 200 e~~~~~d~i~il~~G~i~~~g~~~~l~~ 227 (306)
T PRK13537 200 EAERLCDRLCVIEEGRKIAEGAPHALIE 227 (306)
T ss_pred HHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 4668899999999999999999988754
No 54
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=7.1e-25 Score=191.84 Aligned_cols=159 Identities=18% Similarity=0.221 Sum_probs=127.0
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCc------------------------hhhhcccceeeEEecCcc-cCCCCCHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKS------------------------ACIEQFLKLSCYIQQDDA-LRPKLTVT 54 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~------------------------~~~~~~~~~~g~v~Q~~~-~~~~~tV~ 54 (286)
||||+++ +|..+. .+|+|+++|++... .....+++.+|||||+|. +++..||+
T Consensus 46 KSTLl~~L~Gl~~p-~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~ 124 (305)
T PRK13651 46 KTTFIEHLNALLLP-DTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIE 124 (305)
T ss_pred HHHHHHHHhCCCCC-CCcEEEEeceecccccccccccccccccccccccccccchHHHHHhceEEEeeCcccccccccHH
Confidence 8999999 997654 57999999986521 012345688999999984 66778999
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHh-------h-----h-hhhcccCCccc-------------------cCCCcchHHH
Q psy8953 55 EAMMIASHLKLGFKVSTQEKKDQVS-------L-----E-LWNNFCKKKKK-------------------KKRGLDSSSC 102 (286)
Q Consensus 55 e~l~f~~~~~~~~~~~~~~~~~~v~-------l-----~-~~~~~~gG~kq-------------------ptsgLD~~~~ 102 (286)
|+|+|+++. ...+++++.+++. | . ....+|||||| ||++||+.++
T Consensus 125 e~i~~~~~~---~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~ 201 (305)
T PRK13651 125 KDIIFGPVS---MGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGV 201 (305)
T ss_pred HHHHhhHHH---cCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHH
Confidence 999999874 2345666665554 2 1 44568999999 9999999999
Q ss_pred HHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHhhhHhhhcCCeeecccChhcHHH---HHHhCCCC
Q psy8953 103 SQCVSLLANLAKQGRTVVATIHTPSALLFEKFDSLYALAKGHCIYRGSISRLVP---HLASLGLP 164 (286)
Q Consensus 103 ~~~~~~l~~l~~~g~tii~~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~---~~~~~g~~ 164 (286)
..++++|+++++.|+|||+++|+.+ .+..++||+++|++|++++.|+++++.. .+...++.
T Consensus 202 ~~l~~~l~~l~~~g~tiiivtHd~~-~~~~~adrv~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~ 265 (305)
T PRK13651 202 KEILEIFDNLNKQGKTIILVTHDLD-NVLEWTKRTIFFKDGKIIKDGDTYDILSDNKFLIENNME 265 (305)
T ss_pred HHHHHHHHHHHHCCCEEEEEeeCHH-HHHHhCCEEEEEECCEEEEECCHHHHhcCHHHHHHCCCC
Confidence 9999999999877999999999986 4668899999999999999999988763 33444544
No 55
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.92 E-value=3.2e-25 Score=182.67 Aligned_cols=133 Identities=21% Similarity=0.237 Sum_probs=115.0
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
||||||+ ||+... .+|+|.++|+++. .....+|||||++.+||.+||.||++|+++.+. .+.+|.++++.
T Consensus 42 KSTLLriiAGL~~p-~~G~V~~~g~~v~-----~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~---~~~~e~~~~a~ 112 (248)
T COG1116 42 KSTLLRLIAGLEKP-TSGEVLLDGRPVT-----GPGPDIGYVFQEDALLPWLTVLDNVALGLELRG---KSKAEARERAK 112 (248)
T ss_pred HHHHHHHHhCCCCC-CCceEEECCcccC-----CCCCCEEEEeccCcccchhhHHhhheehhhccc---cchHhHHHHHH
Confidence 8999999 997655 7999999999873 346789999999999999999999999999743 45666665555
Q ss_pred -------hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC-CCEEEEEEcCCC
Q psy8953 80 -------LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ-GRTVVATIHTPS 127 (286)
Q Consensus 80 -------l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~-g~tii~~~h~~~ 127 (286)
|. +++.+|||+|| |.+.||+.++.++.+.|.+++++ +.||++++|+.+
T Consensus 113 ~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~ 192 (248)
T COG1116 113 ELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVD 192 (248)
T ss_pred HHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH
Confidence 32 77889999999 99999999999999999999885 999999999998
Q ss_pred HHHHHHhhhHhhhcCC
Q psy8953 128 ALLFEKFDSLYALAKG 143 (286)
Q Consensus 128 ~~~~~~~d~v~~l~~G 143 (286)
+.+ .+.|||++|.++
T Consensus 193 EAv-~LsdRivvl~~~ 207 (248)
T COG1116 193 EAV-YLADRVVVLSNR 207 (248)
T ss_pred HHH-hhhCEEEEecCC
Confidence 655 789999999984
No 56
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.91 E-value=1.1e-24 Score=194.10 Aligned_cols=151 Identities=17% Similarity=0.167 Sum_probs=125.0
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCC-CCCCHHHHHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLG-FKVSTQEKKDQV 78 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~-~~~~~~~~~~~v 78 (286)
|||||++ +|..+. .+|+|++||+++... ...++.+|||||++.+|+.+||.|+++|+++.... ...+.++.++++
T Consensus 41 KSTLLr~IaGl~~p-~~G~I~i~g~~i~~~--~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~ 117 (353)
T PRK10851 41 KTTLLRIIAGLEHQ-TSGHIRFHGTDVSRL--HARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKV 117 (353)
T ss_pred HHHHHHHHhCCCCC-CCcEEEECCEECCCC--CHHHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHH
Confidence 8999999 997544 689999999998642 22347899999999999999999999999864211 123455555554
Q ss_pred h-------h----h-hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC-CCEEEEEEcCC
Q psy8953 79 S-------L----E-LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ-GRTVVATIHTP 126 (286)
Q Consensus 79 ~-------l----~-~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~-g~tii~~~h~~ 126 (286)
. | . ..+.+||||+| ||++||+.++.++.+.|++++++ |+|+|+++|++
T Consensus 118 ~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~ 197 (353)
T PRK10851 118 TQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQ 197 (353)
T ss_pred HHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 4 2 2 45678999999 99999999999999999999886 99999999999
Q ss_pred CHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 127 SALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 127 ~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
+ ++..++|++++|++|+++..|+++++.
T Consensus 198 ~-ea~~~~Dri~vl~~G~i~~~g~~~~i~ 225 (353)
T PRK10851 198 E-EAMEVADRVVVMSQGNIEQAGTPDQVW 225 (353)
T ss_pred H-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 6 467889999999999999999998875
No 57
>PLN03073 ABC transporter F family; Provisional
Probab=99.91 E-value=5.9e-25 Score=211.30 Aligned_cols=68 Identities=15% Similarity=0.197 Sum_probs=59.1
Q ss_pred hhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHhhhHhhhcCC
Q psy8953 83 WNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVATIHTPSALLFEKFDSLYALAKG 143 (286)
Q Consensus 83 ~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~~~~~~~~~~d~v~~l~~G 143 (286)
..++|||||| ||++||+.++..+.+.|+++ +.|||+++|+.+ .+..++|++++|++|
T Consensus 342 ~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~~tviivsHd~~-~l~~~~d~i~~l~~g 417 (718)
T PLN03073 342 TKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW---PKTFIVVSHARE-FLNTVVTDILHLHGQ 417 (718)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc---CCEEEEEECCHH-HHHHhCCEEEEEECC
Confidence 3568999999 99999999999999999887 679999999975 466889999999999
Q ss_pred eee-cccChhcH
Q psy8953 144 HCI-YRGSISRL 154 (286)
Q Consensus 144 ~i~-~~g~~~~~ 154 (286)
++. |.|+....
T Consensus 418 ~i~~~~g~~~~~ 429 (718)
T PLN03073 418 KLVTYKGDYDTF 429 (718)
T ss_pred EEEEeCCCHHHH
Confidence 996 77776543
No 58
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.91 E-value=1.6e-24 Score=189.87 Aligned_cols=150 Identities=16% Similarity=0.207 Sum_probs=123.5
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
||||+++ +|+.+. .+|+|.++|+++... ...+++.+|||+|++.+++.+||+|++.|.+++. +.+.++..+++.
T Consensus 32 KSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~-~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~ 106 (302)
T TIGR01188 32 KTTTIRMLTTLLRP-TSGTARVAGYDVVRE-PRKVRRSIGIVPQYASVDEDLTGRENLEMMGRLY---GLPKDEAEERAE 106 (302)
T ss_pred HHHHHHHHhCCCCC-CceEEEECCEEcccC-HHHHHhhcEEecCCCCCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHH
Confidence 8999999 997544 689999999987542 1345678999999999999999999999988752 223344333333
Q ss_pred -------hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcCCCH
Q psy8953 80 -------LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVATIHTPSA 128 (286)
Q Consensus 80 -------l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~~~~ 128 (286)
|. ....+|||||| ||+|||+.++..++++|++++++|.|||+++|+++
T Consensus 107 ~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~- 185 (302)
T TIGR01188 107 ELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYME- 185 (302)
T ss_pred HHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-
Confidence 22 34568999999 99999999999999999999878999999999986
Q ss_pred HHHHHhhhHhhhcCCeeecccChhcHHH
Q psy8953 129 LLFEKFDSLYALAKGHCIYRGSISRLVP 156 (286)
Q Consensus 129 ~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 156 (286)
.+..+||++++|++|++++.|+++++..
T Consensus 186 ~~~~~~d~v~~l~~G~i~~~g~~~~l~~ 213 (302)
T TIGR01188 186 EADKLCDRIAIIDHGRIIAEGTPEELKR 213 (302)
T ss_pred HHHHhCCEEEEEECCEEEEECCHHHHHH
Confidence 4668899999999999999999887654
No 59
>KOG0065|consensus
Probab=99.91 E-value=1.4e-24 Score=211.55 Aligned_cols=174 Identities=30% Similarity=0.415 Sum_probs=151.4
Q ss_pred Cchhhhh-cCCCCC--CceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCC----CCCCHHH
Q psy8953 1 MSIELNV-QSIRLT--GSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLG----FKVSTQE 73 (286)
Q Consensus 1 ~stll~~-~g~~~~--~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~----~~~~~~~ 73 (286)
|||||.. +|..+. ..+|+|..||++... ..-++.++|..|+|.++|.+||+|+|.|+++.+.+ ...++.|
T Consensus 154 ~ttllkal~g~~~~~~~~~~~isy~G~~~~e---~~~~~~~aY~~e~DvH~p~lTVreTldFa~rck~~~~r~~~~~R~e 230 (1391)
T KOG0065|consen 154 KTTLLKALAGKLDNFLKSSGEITYNGHDLKE---FVPKKTVAYNSEQDVHFPELTVRETLDFAARCKGPGSRYDEVSRRE 230 (1391)
T ss_pred hHHHHHHHhCCCcccccCCCceeECCCcccc---cccCceEEeccccccccceeEEeehhhHHHhccCCccccccccHHH
Confidence 6999999 996554 467899999999876 23379999999999999999999999999999887 2355566
Q ss_pred HHH-HHh-------hh-hhhccc---------CCccc-------------------cCCCcchHHHHHHHHHHHHHHhC-
Q psy8953 74 KKD-QVS-------LE-LWNNFC---------KKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ- 115 (286)
Q Consensus 74 ~~~-~v~-------l~-~~~~~~---------gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~- 115 (286)
..+ .++ |. |.+|++ ||||| +|+|||+.++.++.+.|+.+++-
T Consensus 231 ~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~t~GLDSsTal~iik~lr~~a~~~ 310 (1391)
T KOG0065|consen 231 KLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEITRGLDSSTAFQIIKALRQLAHIT 310 (1391)
T ss_pred HHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeecccccccHHHHHHHHHHHHHHHhhh
Confidence 443 222 55 777765 89999 88999999999999999999885
Q ss_pred CCEEEEEEcCCCHHHHHHhhhHhhhcCCeeecccChhcHHHHHHhCCCCCCCCCCCCCcccc
Q psy8953 116 GRTVVATIHTPSALLFEKFDSLYALAKGHCIYRGSISRLVPHLASLGLPCPAYHNPADFPNL 177 (286)
Q Consensus 116 g~tii~~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~g~~~p~~~~~~~~~~~ 177 (286)
+.|.+++++||+++++++||.|++|.+|+++|.|+.+++.++|+++|+.||+...++|+..+
T Consensus 311 ~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~Gf~cP~r~~~ADfLt~ 372 (1391)
T KOG0065|consen 311 GATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDMGFKCPPRKGTADFLTE 372 (1391)
T ss_pred cceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhcCccCCCccCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999888877644
No 60
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.91 E-value=2.4e-24 Score=193.16 Aligned_cols=148 Identities=20% Similarity=0.225 Sum_probs=123.3
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
|||||++ +|+.+. .+|+|.++|+++... ...++.+|||+|++.+|+.+||+|+++|+++.+ ..+.++.++++.
T Consensus 42 KSTLL~~iaGl~~p-~~G~I~~~g~~i~~~--~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~ 115 (369)
T PRK11000 42 KSTLLRMIAGLEDI-TSGDLFIGEKRMNDV--PPAERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEEINQRVN 115 (369)
T ss_pred HHHHHHHHhCCCCC-CceEEEECCEECCCC--CHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhc---CCCHHHHHHHHH
Confidence 8999999 997543 689999999988643 223467999999999999999999999998742 234445444443
Q ss_pred -------hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC-CCEEEEEEcCCC
Q psy8953 80 -------LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ-GRTVVATIHTPS 127 (286)
Q Consensus 80 -------l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~-g~tii~~~h~~~ 127 (286)
+. ....+|||||| ||++||+.++.++++.|+++.++ |.|+|+++|+++
T Consensus 116 ~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~ 195 (369)
T PRK11000 116 QVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV 195 (369)
T ss_pred HHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH
Confidence 22 44679999999 99999999999999999999875 999999999986
Q ss_pred HHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 128 ALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 128 ~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
++..++|++++|++|+++..|+++++.
T Consensus 196 -~~~~~~d~i~vl~~G~i~~~g~~~~i~ 222 (369)
T PRK11000 196 -EAMTLADKIVVLDAGRVAQVGKPLELY 222 (369)
T ss_pred -HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 466889999999999999999998875
No 61
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=4.1e-24 Score=184.79 Aligned_cols=149 Identities=21% Similarity=0.179 Sum_probs=121.2
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcc-cCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDA-LRPKLTVTEAMMIASHLKLGFKVSTQEKKDQV 78 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~-~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v 78 (286)
||||+++ +|..+. .+|+|+++|+++........++.+|||+|++. +++..||.|+++|+.+.. ..+.++.++++
T Consensus 44 KSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~ 119 (274)
T PRK13647 44 KSTLLLHLNGIYLP-QRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNM---GLDKDEVERRV 119 (274)
T ss_pred HHHHHHHHhcCCCC-CceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHHHc---CCCHHHHHHHH
Confidence 8999999 997543 68999999998865333455678999999985 667789999999987632 23344444343
Q ss_pred h-------hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcCCC
Q psy8953 79 S-------LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVATIHTPS 127 (286)
Q Consensus 79 ~-------l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~~~ 127 (286)
. |. ....+||||+| ||++||+.++.+++++|++++++|+|||+++|+++
T Consensus 120 ~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~ 199 (274)
T PRK13647 120 EEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVD 199 (274)
T ss_pred HHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 3 22 45678999999 99999999999999999999877999999999986
Q ss_pred HHHHHHhhhHhhhcCCeeecccChhcH
Q psy8953 128 ALLFEKFDSLYALAKGHCIYRGSISRL 154 (286)
Q Consensus 128 ~~~~~~~d~v~~l~~G~i~~~g~~~~~ 154 (286)
. +..++||+++|++|++++.|+++++
T Consensus 200 ~-~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 200 L-AAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred H-HHHhCCEEEEEECCEEEEECCHHHh
Confidence 4 6688999999999999999998653
No 62
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=4.8e-24 Score=187.74 Aligned_cols=159 Identities=17% Similarity=0.181 Sum_probs=125.4
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCch----------------hhhcccceeeEEecCcc-cCCCCCHHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSA----------------CIEQFLKLSCYIQQDDA-LRPKLTVTEAMMIASH 62 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~----------------~~~~~~~~~g~v~Q~~~-~~~~~tV~e~l~f~~~ 62 (286)
||||+++ +|+.+. .+|+|+++|+++... ....+++.+|||+|++. ++...||+|+++|++.
T Consensus 65 KSTLl~~L~Gl~~p-~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~ 143 (320)
T PRK13631 65 KSTLVTHFNGLIKS-KYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPV 143 (320)
T ss_pred HHHHHHHHhCCCCC-CCCeEEECCEEcccccccccccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHH
Confidence 8999999 997544 689999999887431 22456788999999984 4555699999999876
Q ss_pred cCCCCCCCHHHHHHHHh-------hh------hhhcccCCccc-------------------cCCCcchHHHHHHHHHHH
Q psy8953 63 LKLGFKVSTQEKKDQVS-------LE------LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLA 110 (286)
Q Consensus 63 ~~~~~~~~~~~~~~~v~-------l~------~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~ 110 (286)
. ...+.++..+++. +. ....+|||||| ||++||+.++..++++|+
T Consensus 144 ~---~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~ 220 (320)
T PRK13631 144 A---LGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLIL 220 (320)
T ss_pred h---cCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHH
Confidence 3 2234555555544 21 23468999999 999999999999999999
Q ss_pred HHHhCCCEEEEEEcCCCHHHHHHhhhHhhhcCCeeecccChhcHHH---HHHhCCCC
Q psy8953 111 NLAKQGRTVVATIHTPSALLFEKFDSLYALAKGHCIYRGSISRLVP---HLASLGLP 164 (286)
Q Consensus 111 ~l~~~g~tii~~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~---~~~~~g~~ 164 (286)
+++++|.|||+++|+++ .+..++||+++|++|+++..|++++++. .+...++.
T Consensus 221 ~l~~~g~TiiivtHd~~-~~~~~adri~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~ 276 (320)
T PRK13631 221 DAKANNKTVFVITHTME-HVLEVADEVIVMDKGKILKTGTPYEIFTDQHIINSTSIQ 276 (320)
T ss_pred HHHHCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCHHHHhcCHHHHHHcCCC
Confidence 99878999999999986 4668899999999999999999988752 34444544
No 63
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=4.4e-24 Score=180.80 Aligned_cols=151 Identities=23% Similarity=0.263 Sum_probs=121.3
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhh---hcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACI---EQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKD 76 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~---~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~ 76 (286)
|||||++ +|..+. .+|+|.++|+++...+. ..+++.+|||+|++.+++.+||.|++.|+..... ..+.++..+
T Consensus 39 KSTLl~~l~G~~~p-~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~ 115 (235)
T cd03261 39 KSTLLRLIVGLLRP-DSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHT--RLSEEEIRE 115 (235)
T ss_pred HHHHHHHHhCCCCC-CceEEEECCEEccccChhhHHHHhcceEEEccCcccCCCCcHHHHHHHHHhhcc--CCCHHHHHH
Confidence 8999999 997544 68999999998754321 3456789999999999999999999999865311 123444433
Q ss_pred HHh-------hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC-CCEEEEEEc
Q psy8953 77 QVS-------LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ-GRTVVATIH 124 (286)
Q Consensus 77 ~v~-------l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~-g~tii~~~h 124 (286)
++. +. ....+||||+| ||++||+.++..++++|++++++ |.|||+++|
T Consensus 116 ~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH 195 (235)
T cd03261 116 IVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTH 195 (235)
T ss_pred HHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEec
Confidence 333 21 34568999999 99999999999999999999874 999999999
Q ss_pred CCCHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 125 TPSALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 125 ~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
+++ .+..++|++++|++|++++.|+++++.
T Consensus 196 ~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~ 225 (235)
T cd03261 196 DLD-TAFAIADRIAVLYDGKIVAEGTPEELR 225 (235)
T ss_pred CHH-HHHHhcCEEEEEECCeEEEecCHHHHc
Confidence 986 466889999999999999999877653
No 64
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=5.7e-24 Score=185.33 Aligned_cols=150 Identities=17% Similarity=0.185 Sum_probs=121.4
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCc----hhhhcccceeeEEecCcc-cCCCCCHHHHHHHHHhcCCCCCCCHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKS----ACIEQFLKLSCYIQQDDA-LRPKLTVTEAMMIASHLKLGFKVSTQEK 74 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~----~~~~~~~~~~g~v~Q~~~-~~~~~tV~e~l~f~~~~~~~~~~~~~~~ 74 (286)
||||+++ +|..+. .+|+|.++|+++.. .....+++.+|||+|++. ++...||+|+++|+.+. ...+.++.
T Consensus 46 KSTLl~~l~Gl~~p-~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~---~~~~~~~~ 121 (290)
T PRK13634 46 KSTLLQHLNGLLQP-TSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMN---FGVSEEDA 121 (290)
T ss_pred HHHHHHHHhcCCCC-CCcEEEECCEECccccccchHHHHHhhEEEEeeCchhhhhhhhHHHHHHHHHHH---cCCCHHHH
Confidence 8999999 997554 68999999998742 122455678999999974 45567999999999864 22345555
Q ss_pred HHHHh-------hh------hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC-CCEEEE
Q psy8953 75 KDQVS-------LE------LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ-GRTVVA 121 (286)
Q Consensus 75 ~~~v~-------l~------~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~-g~tii~ 121 (286)
.+++. |. ....+||||+| ||++||+.++.+++++|++++++ |.|||+
T Consensus 122 ~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tvii 201 (290)
T PRK13634 122 KQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVL 201 (290)
T ss_pred HHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 44443 31 34568899999 99999999999999999999875 999999
Q ss_pred EEcCCCHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 122 TIHTPSALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 122 ~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
++|+++ .+..++||+++|++|+++++|+++++.
T Consensus 202 itHd~~-~~~~~~drv~~l~~G~i~~~g~~~~~~ 234 (290)
T PRK13634 202 VTHSME-DAARYADQIVVMHKGTVFLQGTPREIF 234 (290)
T ss_pred EeCCHH-HHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 999986 466889999999999999999988875
No 65
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.90 E-value=5.2e-24 Score=188.77 Aligned_cols=150 Identities=23% Similarity=0.217 Sum_probs=123.2
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
||||+++ +|+.+. .+|+|.|+|+++.... ..+++.+|||+|++.+++.+||.|++.|.+.+. ..+..+..+++.
T Consensus 80 KSTLl~~L~Gl~~p-~~G~i~i~G~~~~~~~-~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~ 154 (340)
T PRK13536 80 KSTIARMILGMTSP-DAGKITVLGVPVPARA-RLARARIGVVPQFDNLDLEFTVRENLLVFGRYF---GMSTREIEAVIP 154 (340)
T ss_pred HHHHHHHHHcCCCC-CceEEEECCEECCcch-HHHhccEEEEeCCccCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHH
Confidence 8999999 997544 6899999999986422 345788999999999999999999999876542 123333333332
Q ss_pred -------hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcCCCH
Q psy8953 80 -------LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVATIHTPSA 128 (286)
Q Consensus 80 -------l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~~~~ 128 (286)
|. ...++|||||| ||+||||.++.+++++|++++++|+|||+++|+.+
T Consensus 155 ~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~- 233 (340)
T PRK13536 155 SLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME- 233 (340)
T ss_pred HHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-
Confidence 22 34568999999 99999999999999999999888999999999996
Q ss_pred HHHHHhhhHhhhcCCeeecccChhcHHH
Q psy8953 129 LLFEKFDSLYALAKGHCIYRGSISRLVP 156 (286)
Q Consensus 129 ~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 156 (286)
++..+|||+++|++|++++.|+++++..
T Consensus 234 e~~~~~d~i~il~~G~i~~~g~~~~l~~ 261 (340)
T PRK13536 234 EAERLCDRLCVLEAGRKIAEGRPHALID 261 (340)
T ss_pred HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 4678899999999999999999988754
No 66
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=5.3e-24 Score=184.59 Aligned_cols=158 Identities=15% Similarity=0.192 Sum_probs=127.1
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcc-cCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDA-LRPKLTVTEAMMIASHLKLGFKVSTQEKKDQV 78 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~-~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v 78 (286)
||||+++ +|+.+. .+|+|+++|+++.......+++.+|||+|++. +++..||+|++.|+.+. .+.++++..+++
T Consensus 46 KSTLl~~l~Gl~~p-~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~---~~~~~~~~~~~~ 121 (279)
T PRK13650 46 KSTTVRLIDGLLEA-ESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLEN---KGIPHEEMKERV 121 (279)
T ss_pred HHHHHHHHhcCCCC-CCcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHh---CCCCHHHHHHHH
Confidence 8999999 997544 69999999999865434456678999999985 78889999999998764 233455554444
Q ss_pred h-------hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC-CCEEEEEEcCC
Q psy8953 79 S-------LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ-GRTVVATIHTP 126 (286)
Q Consensus 79 ~-------l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~-g~tii~~~h~~ 126 (286)
. |. ....+||||+| ||++||+.++..++++|++++++ |+|||+++|++
T Consensus 122 ~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~ 201 (279)
T PRK13650 122 NEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDL 201 (279)
T ss_pred HHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 3 22 44678999999 99999999999999999999875 99999999998
Q ss_pred CHHHHHHhhhHhhhcCCeeecccChhcHHH---HHHhCCCC
Q psy8953 127 SALLFEKFDSLYALAKGHCIYRGSISRLVP---HLASLGLP 164 (286)
Q Consensus 127 ~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~---~~~~~g~~ 164 (286)
+. + ..+|++++|++|+++.+|+++++.. .+...++.
T Consensus 202 ~~-~-~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 240 (279)
T PRK13650 202 DE-V-ALSDRVLVMKNGQVESTSTPRELFSRGNDLLQLGLD 240 (279)
T ss_pred HH-H-HhCCEEEEEECCEEEEECCHHHHHcChHHHHHcCCC
Confidence 64 4 5799999999999999999988763 23444544
No 67
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=5.9e-24 Score=189.12 Aligned_cols=150 Identities=20% Similarity=0.294 Sum_probs=123.0
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchh---hhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSAC---IEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKD 76 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~---~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~ 76 (286)
||||+++ +|+.+. .+|+|.++|+++...+ ...+++.+|||+|++.+++.+||.|++.|.+++. +.+.++.++
T Consensus 44 KSTLlk~L~Gl~~p-~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~ 119 (343)
T PRK11153 44 KSTLIRCINLLERP-TSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELA---GTPKAEIKA 119 (343)
T ss_pred HHHHHHHHhCCCCC-CceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHc---CCCHHHHHH
Confidence 8999999 997644 6899999999986422 1234678999999999999999999999987642 233444444
Q ss_pred HHh-------hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC-CCEEEEEEc
Q psy8953 77 QVS-------LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ-GRTVVATIH 124 (286)
Q Consensus 77 ~v~-------l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~-g~tii~~~h 124 (286)
++. +. ....+|||||| ||++||+.++..++++|++++++ |+|||+++|
T Consensus 120 ~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH 199 (343)
T PRK11153 120 RVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITH 199 (343)
T ss_pred HHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 433 22 34568999999 99999999999999999999875 999999999
Q ss_pred CCCHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 125 TPSALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 125 ~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
+++ .+..+||++++|++|++++.|+++++.
T Consensus 200 ~~~-~i~~~~d~v~~l~~G~i~~~g~~~~~~ 229 (343)
T PRK11153 200 EMD-VVKRICDRVAVIDAGRLVEQGTVSEVF 229 (343)
T ss_pred CHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 986 466889999999999999999987764
No 68
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.90 E-value=5.5e-24 Score=188.06 Aligned_cols=148 Identities=22% Similarity=0.266 Sum_probs=122.6
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
|||||++ +|+.+. .+|+|.++|+++... ...++.+|||+|++.+|+.+||.|++.|+++.+ ..+.++.++++.
T Consensus 9 KSTLl~~iaGl~~p-~~G~I~i~g~~i~~~--~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~~~~~~~~~ 82 (325)
T TIGR01187 9 KTTLLRLLAGFEQP-DSGSIMLDGEDVTNV--PPHLRHINMVFQSYALFPHMTVEENVAFGLKMR---KVPRAEIKPRVL 82 (325)
T ss_pred HHHHHHHHHCCCCC-CceEEEECCEECCCC--CHHHCCEEEEecCccccCCCcHHHHHHHHHhhc---CCCHHHHHHHHH
Confidence 8999999 997654 689999999988542 223578999999999999999999999998642 223444433333
Q ss_pred -------h----h-hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC-CCEEEEEEcCCC
Q psy8953 80 -------L----E-LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ-GRTVVATIHTPS 127 (286)
Q Consensus 80 -------l----~-~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~-g~tii~~~h~~~ 127 (286)
+ . ....+|||||| ||++||+.++..+.+.|++++++ |+|||+++|+++
T Consensus 83 ~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd~~ 162 (325)
T TIGR01187 83 EALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQE 162 (325)
T ss_pred HHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 2 2 45678999999 99999999999999999999875 999999999986
Q ss_pred HHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 128 ALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 128 ~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
++..++|++++|++|+++..|+++++.
T Consensus 163 -e~~~~~d~i~vl~~G~i~~~g~~~~~~ 189 (325)
T TIGR01187 163 -EAMTMSDRIAIMRKGKIAQIGTPEEIY 189 (325)
T ss_pred -HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 466889999999999999999998875
No 69
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=1.3e-23 Score=182.87 Aligned_cols=151 Identities=17% Similarity=0.243 Sum_probs=122.9
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchh--hhcccceeeEEecCcc-cCCCCCHHHHHHHHHhcCCCCCCCHHHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSAC--IEQFLKLSCYIQQDDA-LRPKLTVTEAMMIASHLKLGFKVSTQEKKD 76 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~--~~~~~~~~g~v~Q~~~-~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~ 76 (286)
||||+++ +|..+. .+|+|+++|+++...+ ...+++.+|||+|++. +++..||+|+++|+.+. ...++++..+
T Consensus 46 KSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~---~~~~~~~~~~ 121 (287)
T PRK13637 46 KSTLIQHLNGLLKP-TSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPIN---LGLSEEEIEN 121 (287)
T ss_pred HHHHHHHHhcCCCC-CccEEEECCEECCCcCccHHHHhhceEEEecCchhccccccHHHHHHhHHHH---CCCCHHHHHH
Confidence 8999999 997544 7999999999986421 1345689999999985 55678999999998764 2345666555
Q ss_pred HHh-------h---h----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC-CCEEEEE
Q psy8953 77 QVS-------L---E----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ-GRTVVAT 122 (286)
Q Consensus 77 ~v~-------l---~----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~-g~tii~~ 122 (286)
++. | . ....+||||+| ||++||+.++.+++++|++++++ |+|||++
T Consensus 122 ~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~v 201 (287)
T PRK13637 122 RVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILV 201 (287)
T ss_pred HHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 544 3 1 23458899999 99999999999999999999875 9999999
Q ss_pred EcCCCHHHHHHhhhHhhhcCCeeecccChhcHHH
Q psy8953 123 IHTPSALLFEKFDSLYALAKGHCIYRGSISRLVP 156 (286)
Q Consensus 123 ~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 156 (286)
+|+++ .+..++||+++|++|++++.|+++++..
T Consensus 202 tHd~~-~~~~~~drv~~l~~G~i~~~g~~~~~~~ 234 (287)
T PRK13637 202 SHSME-DVAKLADRIIVMNKGKCELQGTPREVFK 234 (287)
T ss_pred eCCHH-HHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99986 4668899999999999999999988753
No 70
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.90 E-value=1.2e-23 Score=184.37 Aligned_cols=150 Identities=24% Similarity=0.224 Sum_probs=122.0
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
|||||++ +|+.+. .+|+|.++|+++... ...+++.+|||+|++.+++.+||+|++.|.+.+. ..+.++..+++.
T Consensus 43 KSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~-~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~ 117 (303)
T TIGR01288 43 KSTIARMLLGMISP-DRGKITVLGEPVPSR-ARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYF---GMSTREIEAVIP 117 (303)
T ss_pred HHHHHHHHhCCCCC-CceEEEECCEECccc-HHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHc---CCCHHHHHHHHH
Confidence 8999999 997543 689999999987532 1345678999999999999999999999866532 123333333332
Q ss_pred -------hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcCCCH
Q psy8953 80 -------LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVATIHTPSA 128 (286)
Q Consensus 80 -------l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~~~~ 128 (286)
+. ....+|||||| ||+|||+.++..++++|++++++|.|||+++|+++
T Consensus 118 ~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~- 196 (303)
T TIGR01288 118 SLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME- 196 (303)
T ss_pred HHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-
Confidence 22 34678999999 99999999999999999999888999999999996
Q ss_pred HHHHHhhhHhhhcCCeeecccChhcHHH
Q psy8953 129 LLFEKFDSLYALAKGHCIYRGSISRLVP 156 (286)
Q Consensus 129 ~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 156 (286)
.+..+||++++|++|++++.|+++++..
T Consensus 197 ~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 224 (303)
T TIGR01288 197 EAERLCDRLCVLESGRKIAEGRPHALID 224 (303)
T ss_pred HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 4668899999999999999999887653
No 71
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=1.6e-23 Score=175.59 Aligned_cols=147 Identities=18% Similarity=0.271 Sum_probs=118.7
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
||||+++ +|..+. .+|+|.++|.++... ...+++.++||+|++.+++.+||+|++.|..+.. ..+.++..+++.
T Consensus 39 KSTLl~~i~G~~~~-~~G~i~~~g~~~~~~-~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~ 113 (220)
T cd03265 39 KTTTIKMLTTLLKP-TSGRATVAGHDVVRE-PREVRRRIGIVFQDLSVDDELTGWENLYIHARLY---GVPGAERRERID 113 (220)
T ss_pred HHHHHHHHhCCCCC-CceEEEECCEecCcC-hHHHhhcEEEecCCccccccCcHHHHHHHHHHHc---CCCHHHHHHHHH
Confidence 8999999 997543 689999999987532 1345678999999999999999999999987642 123333333322
Q ss_pred -------hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC-CCEEEEEEcCCC
Q psy8953 80 -------LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ-GRTVVATIHTPS 127 (286)
Q Consensus 80 -------l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~-g~tii~~~h~~~ 127 (286)
+. ....+||||+| ||++||+.++..+.+.|++++++ |.|||+++|+++
T Consensus 114 ~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~ 193 (220)
T cd03265 114 ELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYME 193 (220)
T ss_pred HHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 22 34568999999 99999999999999999999886 999999999986
Q ss_pred HHHHHHhhhHhhhcCCeeecccChhc
Q psy8953 128 ALLFEKFDSLYALAKGHCIYRGSISR 153 (286)
Q Consensus 128 ~~~~~~~d~v~~l~~G~i~~~g~~~~ 153 (286)
. +..++|++++|++|+++..|++++
T Consensus 194 ~-~~~~~d~i~~l~~G~i~~~~~~~~ 218 (220)
T cd03265 194 E-AEQLCDRVAIIDHGRIIAEGTPEE 218 (220)
T ss_pred H-HHHhCCEEEEEeCCEEEEeCChHH
Confidence 4 668899999999999999887654
No 72
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.90 E-value=3.6e-24 Score=180.51 Aligned_cols=150 Identities=19% Similarity=0.230 Sum_probs=133.2
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcc----cceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQF----LKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKK 75 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~----~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~ 75 (286)
||||+.+ +++... ..|+|+|+|.++..++.+.+ ++.+++|||+..++|+.||.|+.+|++|+ .+++++|++
T Consensus 67 KSTLvR~~NrLiep-t~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev---~Gv~~~er~ 142 (386)
T COG4175 67 KSTLVRLLNRLIEP-TRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEV---QGVPKAERE 142 (386)
T ss_pred HHHHHHHHhccCCC-CCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceee---cCCCHHHHH
Confidence 8999999 987665 89999999999976544443 37999999999999999999999999998 667899988
Q ss_pred HHHh-------hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC-CCEEEEEE
Q psy8953 76 DQVS-------LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ-GRTVVATI 123 (286)
Q Consensus 76 ~~v~-------l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~-g~tii~~~ 123 (286)
+++. |. +++.+|||++| |.|.|||--+.++-+.|-+|..+ .+|||.++
T Consensus 143 ~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFit 222 (386)
T COG4175 143 ERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFIT 222 (386)
T ss_pred HHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEe
Confidence 8766 32 77899999999 88999999999999999999887 99999999
Q ss_pred cCCCHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 124 HTPSALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 124 h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
|++++ .+..-|||.+|.+|+|+-.|+|+++.
T Consensus 223 HDLdE-AlriG~rIaimkdG~ivQ~Gtp~eIl 253 (386)
T COG4175 223 HDLDE-ALRIGDRIAIMKDGEIVQVGTPEEIL 253 (386)
T ss_pred cCHHH-HHhccceEEEecCCeEEEeCCHHHHH
Confidence 99975 56889999999999999999999986
No 73
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.90 E-value=2e-23 Score=176.83 Aligned_cols=153 Identities=20% Similarity=0.269 Sum_probs=120.2
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcc-cceeeEEecCcccCCCCCHHHHHHHHHhcCCCCC-------CCH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQF-LKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFK-------VST 71 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~-~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~-------~~~ 71 (286)
|||||++ +|+.+. .+|+|.++|+++...+...+ ++.++||+|++.+++.+||+|++.|+........ ...
T Consensus 39 KSTLl~~l~Gl~~~-~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~ 117 (236)
T cd03219 39 KTTLFNLISGFLRP-TSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREE 117 (236)
T ss_pred HHHHHHHHcCCCCC-CCceEEECCEECCCCCHHHHHhcCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccH
Confidence 8999999 997543 68999999998764322232 4569999999999999999999999876421110 012
Q ss_pred HHHHHHHh-------hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEE
Q psy8953 72 QEKKDQVS-------LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVV 120 (286)
Q Consensus 72 ~~~~~~v~-------l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii 120 (286)
++..+++. +. ....+||||+| ||++||+.++..++++|++++++|+|||
T Consensus 118 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii 197 (236)
T cd03219 118 REARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVL 197 (236)
T ss_pred HHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 23333332 22 34568999999 9999999999999999999987899999
Q ss_pred EEEcCCCHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 121 ATIHTPSALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 121 ~~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
+++|+++ .+..++|++++|++|+++..|+++++.
T Consensus 198 ~vsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 231 (236)
T cd03219 198 LVEHDMD-VVMSLADRVTVLDQGRVIAEGTPDEVR 231 (236)
T ss_pred EEecCHH-HHHHhCCEEEEEeCCEEEeecCHHHhc
Confidence 9999996 466889999999999999999877653
No 74
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=2.1e-23 Score=187.84 Aligned_cols=150 Identities=17% Similarity=0.231 Sum_probs=122.1
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhc----ccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQ----FLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKK 75 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~----~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~ 75 (286)
|||||++ +|+.+. .+|+|++||+++...+... .++.+|||+|++.+|+.+||+|++.|+++++ ..+.++..
T Consensus 67 KSTLLr~I~Gl~~p-~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~---~~~~~~~~ 142 (400)
T PRK10070 67 KSTMVRLLNRLIEP-TRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELA---GINAEERR 142 (400)
T ss_pred HHHHHHHHHcCCCC-CCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhc---CCCHHHHH
Confidence 8999999 997554 6899999999986432222 2357999999999999999999999998752 23344444
Q ss_pred HHHh-------h----h-hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHh-CCCEEEEEE
Q psy8953 76 DQVS-------L----E-LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAK-QGRTVVATI 123 (286)
Q Consensus 76 ~~v~-------l----~-~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~-~g~tii~~~ 123 (286)
+++. | . ....+||||+| ||++||+.++.++.+.|+++++ .|+|||+++
T Consensus 143 ~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivT 222 (400)
T PRK10070 143 EKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFIS 222 (400)
T ss_pred HHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 3333 2 2 45679999999 9999999999999999999986 499999999
Q ss_pred cCCCHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 124 HTPSALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 124 h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
|+++. +..++|++++|++|+++..|+++++.
T Consensus 223 Hd~~~-~~~~~Dri~vL~~G~i~~~g~~~~l~ 253 (400)
T PRK10070 223 HDLDE-AMRIGDRIAIMQNGEVVQVGTPDEIL 253 (400)
T ss_pred CCHHH-HHHhCCEEEEEECCEEEecCCHHHHH
Confidence 99864 66889999999999999999988764
No 75
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=2.6e-23 Score=180.20 Aligned_cols=149 Identities=17% Similarity=0.198 Sum_probs=122.4
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcc-cCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDA-LRPKLTVTEAMMIASHLKLGFKVSTQEKKDQV 78 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~-~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v 78 (286)
||||+++ +|..+. .+|+|+++|+++...+....++.+|||+|++. +++..||.|++.|+.+.. ..+.++..+++
T Consensus 46 KSTLl~~i~G~~~p-~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~ 121 (279)
T PRK13635 46 KSTLAKLLNGLLLP-EAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENI---GVPREEMVERV 121 (279)
T ss_pred HHHHHHHHhcCCCC-CCcEEEECCEECCcCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhhC---CCCHHHHHHHH
Confidence 8999999 997554 69999999999865444455678999999985 788899999999987642 23444444444
Q ss_pred h-------hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC-CCEEEEEEcCC
Q psy8953 79 S-------LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ-GRTVVATIHTP 126 (286)
Q Consensus 79 ~-------l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~-g~tii~~~h~~ 126 (286)
. |. ....+||||+| ||++||+.++..++++|++++++ |+|||+++|++
T Consensus 122 ~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~ 201 (279)
T PRK13635 122 DQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDL 201 (279)
T ss_pred HHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCH
Confidence 3 22 45678999999 99999999999999999999986 99999999998
Q ss_pred CHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 127 SALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 127 ~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
+. +. .+|++++|++|++++.|+++++.
T Consensus 202 ~~-~~-~~d~i~~l~~G~i~~~g~~~~~~ 228 (279)
T PRK13635 202 DE-AA-QADRVIVMNKGEILEEGTPEEIF 228 (279)
T ss_pred HH-HH-cCCEEEEEECCEEEEECCHHHHh
Confidence 75 43 59999999999999999988765
No 76
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.89 E-value=2.4e-23 Score=175.95 Aligned_cols=150 Identities=18% Similarity=0.286 Sum_probs=119.8
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhc-ccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQ-FLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQV 78 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~-~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v 78 (286)
|||||++ +|..+. .+|+|.+||+++...+... .++.++||+|++.+++.+||+|++.|..+.+. ...++..+++
T Consensus 39 KSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~ 114 (232)
T cd03218 39 KTTTFYMIVGLVKP-DSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRG---LSKKEREEKL 114 (232)
T ss_pred HHHHHHHHhCCCCC-CCcEEEECCEecccCCHhHHHhccEEEecCCccccccCcHHHHHHHHHHhcC---CCHHHHHHHH
Confidence 8999999 997543 7899999999875422222 24579999999999999999999999865321 2333333333
Q ss_pred h-------hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcCCC
Q psy8953 79 S-------LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVATIHTPS 127 (286)
Q Consensus 79 ~-------l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~~~ 127 (286)
. +. ....+||||+| ||++||+.++..++++|++++++|+|||+++|+++
T Consensus 115 ~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~ 194 (232)
T cd03218 115 EELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVR 194 (232)
T ss_pred HHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 2 22 34568999999 99999999999999999999888999999999986
Q ss_pred HHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 128 ALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 128 ~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
.+..++|++++|++|++++.|+++++.
T Consensus 195 -~~~~~~d~i~~l~~G~i~~~~~~~~~~ 221 (232)
T cd03218 195 -ETLSITDRAYIIYEGKVLAEGTPEEIA 221 (232)
T ss_pred -HHHHhCCEEEEEECCeEEEEeCHHHhh
Confidence 466889999999999999999877653
No 77
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.89 E-value=4.1e-23 Score=165.32 Aligned_cols=150 Identities=15% Similarity=0.135 Sum_probs=127.1
Q ss_pred Cchhhhh-cCC---CCC-CceeEEEECCeecCc--hhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHH
Q psy8953 1 MSIELNV-QSI---RLT-GSSGKILVNGQERKS--ACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQE 73 (286)
Q Consensus 1 ~stll~~-~g~---~~~-~~~G~i~~~g~~~~~--~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~ 73 (286)
|||||.+ ... .++ ..+|+|+++|+++.. .++-.+++.+|+|||.|.-|| +++.|+++|+++++.- ..++
T Consensus 46 KST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g~---~~~~ 121 (253)
T COG1117 46 KSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGI---KDKE 121 (253)
T ss_pred HHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhhcc---chHH
Confidence 8999999 764 343 599999999999965 345677999999999999999 9999999999997442 2377
Q ss_pred HHHHHh-------hh---------hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCE
Q psy8953 74 KKDQVS-------LE---------LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRT 118 (286)
Q Consensus 74 ~~~~v~-------l~---------~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~t 118 (286)
++++|+ |+ ....+||||+| |||.|||.++..+-.++.+|++ ..|
T Consensus 122 ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~-~yT 200 (253)
T COG1117 122 LDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKK-KYT 200 (253)
T ss_pred HHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHh-ccE
Confidence 777777 22 34458899999 9999999999999999999985 689
Q ss_pred EEEEEcCCCHHHHHHhhhHhhhcCCeeecccChhcHHH
Q psy8953 119 VVATIHTPSALLFEKFDSLYALAKGHCIYRGSISRLVP 156 (286)
Q Consensus 119 ii~~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 156 (286)
||+++|.+. ......|+..++..|+++..|+.++++.
T Consensus 201 IviVTHnmq-QAaRvSD~taFf~~G~LvE~g~T~~iF~ 237 (253)
T COG1117 201 IVIVTHNMQ-QAARVSDYTAFFYLGELVEFGPTDKIFT 237 (253)
T ss_pred EEEEeCCHH-HHHHHhHhhhhhcccEEEEEcCHHhhhc
Confidence 999999985 5778899999999999999999887763
No 78
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.89 E-value=2.6e-23 Score=170.14 Aligned_cols=152 Identities=24% Similarity=0.286 Sum_probs=124.9
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCch-hhhcccceeeEEecCcc--cCCCCCHHHHHHHHHhc-CCCCCCCHHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSA-CIEQFLKLSCYIQQDDA--LRPKLTVTEAMMIASHL-KLGFKVSTQEKK 75 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~-~~~~~~~~~g~v~Q~~~--~~~~~tV~e~l~f~~~~-~~~~~~~~~~~~ 75 (286)
||||+++ +|+... .+|+|.++|++.... ..+.+.+.+-+|||||. +-|..||++.|.=++.. +++ ...+++.
T Consensus 46 KSTL~r~l~Gl~~p-~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~--~~~~~i~ 122 (252)
T COG1124 46 KSTLARLLAGLEKP-SSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLS--KSQQRIA 122 (252)
T ss_pred HHHHHHHHhcccCC-CCceEEECCcccCccccchhhccceeEEecCCccccCcchhHHHHHhhhhccCCcc--HHHHHHH
Confidence 8999999 998665 899999999877541 12356899999999996 56999999999999884 222 1122222
Q ss_pred H---HHh-----hh-hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC-CCEEEEEEcCC
Q psy8953 76 D---QVS-----LE-LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ-GRTVVATIHTP 126 (286)
Q Consensus 76 ~---~v~-----l~-~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~-g~tii~~~h~~ 126 (286)
+ .|. +. .++.+||||+| |||.||+.-+.+++++|..+.++ +.|.|++.|+.
T Consensus 123 ~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl 202 (252)
T COG1124 123 ELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDL 202 (252)
T ss_pred HHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcH
Confidence 2 232 44 78999999999 99999999999999999999985 99999999998
Q ss_pred CHHHHHHhhhHhhhcCCeeecccChhcHHH
Q psy8953 127 SALLFEKFDSLYALAKGHCIYRGSISRLVP 156 (286)
Q Consensus 127 ~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 156 (286)
. .+..+|||++||++|+++..++..++..
T Consensus 203 ~-~v~~~cdRi~Vm~~G~ivE~~~~~~l~~ 231 (252)
T COG1124 203 A-LVEHMCDRIAVMDNGQIVEIGPTEELLS 231 (252)
T ss_pred H-HHHHHhhheeeeeCCeEEEeechhhhhc
Confidence 6 5789999999999999999998877654
No 79
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.89 E-value=3.2e-23 Score=183.22 Aligned_cols=152 Identities=22% Similarity=0.240 Sum_probs=124.0
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchh---hhcccceeeEEecCc--ccCCCCCHHHHHHHHHhcCCCCCCCHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSAC---IEQFLKLSCYIQQDD--ALRPKLTVTEAMMIASHLKLGFKVSTQEK 74 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~---~~~~~~~~g~v~Q~~--~~~~~~tV~e~l~f~~~~~~~~~~~~~~~ 74 (286)
||||+++ +|+.+. .+|+|+++|+++...+ ...+++.++||+||+ .+++.+||.|+++|.+....+ ..+.++.
T Consensus 60 KSTLlk~i~Gl~~p-~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~-~~~~~~~ 137 (331)
T PRK15079 60 KSTFARAIIGLVKA-TDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHP-KLSRQEV 137 (331)
T ss_pred HHHHHHHHHCCCCC-CCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhcc-CCCHHHH
Confidence 8999999 997654 6899999999986432 234567899999998 478999999999998764211 2345555
Q ss_pred HHHHh-------h-----h-hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC-CCEEEE
Q psy8953 75 KDQVS-------L-----E-LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ-GRTVVA 121 (286)
Q Consensus 75 ~~~v~-------l-----~-~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~-g~tii~ 121 (286)
++++. + . ..+.+||||+| ||++||+.++.+++++|++++++ |.|||+
T Consensus 138 ~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~ 217 (331)
T PRK15079 138 KDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIF 217 (331)
T ss_pred HHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 54443 2 2 45679999999 99999999999999999999875 999999
Q ss_pred EEcCCCHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 122 TIHTPSALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 122 ~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
++|+++ .+..++|++++|.+|+++..|++++++
T Consensus 218 iTHdl~-~~~~~~dri~vl~~G~ive~g~~~~i~ 250 (331)
T PRK15079 218 IAHDLA-VVKHISDRVLVMYLGHAVELGTYDEVY 250 (331)
T ss_pred EeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999986 466889999999999999999988765
No 80
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.89 E-value=1.6e-23 Score=173.78 Aligned_cols=149 Identities=17% Similarity=0.193 Sum_probs=128.4
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchh----hhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSAC----IEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKK 75 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~----~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~ 75 (286)
||||+|+ ||+... -+|.|.+||....+++ ...-+|.+||||||-.+||++||+-||.|+... ....+..
T Consensus 37 KTslin~IaGL~rP-deG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrgNL~YG~~~-----~~~~~fd 110 (352)
T COG4148 37 KTSLINMIAGLTRP-DEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGNLRYGMWK-----SMRAQFD 110 (352)
T ss_pred hhhHHHHHhccCCc-cccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEecchhhhhcc-----cchHhHH
Confidence 8999999 997544 6899999998775421 122368999999999999999999999999973 2466777
Q ss_pred HHHh-------hh-hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC-CCEEEEEEcCCC
Q psy8953 76 DQVS-------LE-LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ-GRTVVATIHTPS 127 (286)
Q Consensus 76 ~~v~-------l~-~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~-g~tii~~~h~~~ 127 (286)
+.|+ |. .+.++|||||| |.+.||-.-..|++-.|++|.++ .++|+-+.|-++
T Consensus 111 ~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~IPIlYVSHS~~ 190 (352)
T COG4148 111 QLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSLD 190 (352)
T ss_pred HHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHhcCCCEEEEecCHH
Confidence 7776 44 88899999999 99999999999999999999987 999999999996
Q ss_pred HHHHHHhhhHhhhcCCeeecccChhcHHH
Q psy8953 128 ALLFEKFDSLYALAKGHCIYRGSISRLVP 156 (286)
Q Consensus 128 ~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 156 (286)
++..++|+|++|++|++.+.|+.++++.
T Consensus 191 -Ev~RLAd~vV~le~GkV~A~g~~e~v~~ 218 (352)
T COG4148 191 -EVLRLADRVVVLENGKVKASGPLEEVWG 218 (352)
T ss_pred -HHHhhhheEEEecCCeEEecCcHHHHhc
Confidence 5789999999999999999999988864
No 81
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=4e-23 Score=179.68 Aligned_cols=151 Identities=17% Similarity=0.176 Sum_probs=121.1
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCch----hhhcccceeeEEecCcc-cCCCCCHHHHHHHHHhcCCCCCCCHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSA----CIEQFLKLSCYIQQDDA-LRPKLTVTEAMMIASHLKLGFKVSTQEK 74 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~----~~~~~~~~~g~v~Q~~~-~~~~~tV~e~l~f~~~~~~~~~~~~~~~ 74 (286)
||||+++ +|..+. .+|+|.++|+++... +...+++.+|||||++. ++...||+|++.|+++. ...+.++.
T Consensus 46 KSTLl~~L~Gl~~p-~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~---~~~~~~~~ 121 (286)
T PRK13646 46 KSTLIQNINALLKP-TTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKN---FKMNLDEV 121 (286)
T ss_pred HHHHHHHHhcCCCC-CCcEEEECCEECccccccchHHHHHhheEEEecChHhccchhhHHHHHHhhHHH---cCCCHHHH
Confidence 8999999 997544 689999999987531 22356788999999984 44456999999998763 22345555
Q ss_pred HHHHh-------hh------hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC-CCEEEE
Q psy8953 75 KDQVS-------LE------LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ-GRTVVA 121 (286)
Q Consensus 75 ~~~v~-------l~------~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~-g~tii~ 121 (286)
.+++. |. ....+|||||| ||++||+.++.+++++|++++.+ |+|||+
T Consensus 122 ~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~ 201 (286)
T PRK13646 122 KNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIIL 201 (286)
T ss_pred HHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 44444 21 23558899999 99999999999999999999874 999999
Q ss_pred EEcCCCHHHHHHhhhHhhhcCCeeecccChhcHHH
Q psy8953 122 TIHTPSALLFEKFDSLYALAKGHCIYRGSISRLVP 156 (286)
Q Consensus 122 ~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 156 (286)
++|+++ .+..++||+++|++|++++.|++++++.
T Consensus 202 vtH~~~-~~~~~~dri~~l~~G~i~~~g~~~~~~~ 235 (286)
T PRK13646 202 VSHDMN-EVARYADEVIVMKEGSIVSQTSPKELFK 235 (286)
T ss_pred EecCHH-HHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999986 4668899999999999999999887653
No 82
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.89 E-value=1.9e-23 Score=188.25 Aligned_cols=153 Identities=17% Similarity=0.234 Sum_probs=122.9
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCC--CCCCHH---HH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLG--FKVSTQ---EK 74 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~--~~~~~~---~~ 74 (286)
|||||++ +|..+. .+|+|+++|+++...+.+.+++.+|||+|++.+++.+||+|++.++...... ...+.+ .+
T Consensus 42 KSTLLk~LaGll~p-~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v 120 (402)
T PRK09536 42 KTTLLRAINGTLTP-TAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAV 120 (402)
T ss_pred HHHHHHHHhcCCCC-CCcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHH
Confidence 8999999 996543 7899999999987655566778999999999999999999999987532110 001121 11
Q ss_pred H---HHHhhh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcCCC
Q psy8953 75 K---DQVSLE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVATIHTPS 127 (286)
Q Consensus 75 ~---~~v~l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~~~ 127 (286)
. +++.+. ....+|||||| ||++||+.++.+++++|++++++|+|||+++|+++
T Consensus 121 ~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~ 200 (402)
T PRK09536 121 ERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLD 200 (402)
T ss_pred HHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH
Confidence 2 222222 44678999999 99999999999999999999877999999999996
Q ss_pred HHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 128 ALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 128 ~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
.+..++||+++|++|++++.|++++++
T Consensus 201 -~~~~~adrii~l~~G~iv~~G~~~ev~ 227 (402)
T PRK09536 201 -LAARYCDELVLLADGRVRAAGPPADVL 227 (402)
T ss_pred -HHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 466889999999999999999998864
No 83
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.89 E-value=3.8e-23 Score=181.08 Aligned_cols=149 Identities=17% Similarity=0.250 Sum_probs=122.1
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
|||||++ +|+.+. .+|+|.++|+++... ....++.+|||+|++.+++.+||.|++.|.+.+. +.+.++..+++.
T Consensus 41 KTTLl~~l~Gl~~~-~~G~i~i~g~~~~~~-~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~ 115 (301)
T TIGR03522 41 KSTTMKIITGYLPP-DSGSVQVCGEDVLQN-PKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIY---GMKGQLLKQRVE 115 (301)
T ss_pred HHHHHHHHhCCCCC-CceEEEECCEEcccC-hHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHH
Confidence 8999999 997543 689999999988642 2345678999999999999999999999988752 223333333333
Q ss_pred -------hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcCCCH
Q psy8953 80 -------LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVATIHTPSA 128 (286)
Q Consensus 80 -------l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~~~~ 128 (286)
+. ....+|||||| ||+|||+.++..+++.|+++++ ++|||+++|+++
T Consensus 116 ~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l~- 193 (301)
T TIGR03522 116 EMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK-DKTIILSTHIMQ- 193 (301)
T ss_pred HHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-
Confidence 22 33558899999 9999999999999999999975 799999999996
Q ss_pred HHHHHhhhHhhhcCCeeecccChhcHHH
Q psy8953 129 LLFEKFDSLYALAKGHCIYRGSISRLVP 156 (286)
Q Consensus 129 ~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 156 (286)
++.++|||+++|++|++++.|+++++..
T Consensus 194 ~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (301)
T TIGR03522 194 EVEAICDRVIIINKGKIVADKKLDELSA 221 (301)
T ss_pred HHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 4668899999999999999999988754
No 84
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.89 E-value=4.3e-23 Score=172.75 Aligned_cols=143 Identities=15% Similarity=0.247 Sum_probs=115.8
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
||||+++ +|..+. .+|+|.++|+++... ...+++.+|||+|++.+++.+||.|++.|..+.. ..+.++..+++.
T Consensus 44 KSTLl~~l~Gl~~~-~~G~i~~~g~~~~~~-~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~ 118 (218)
T cd03266 44 KTTTLRMLAGLLEP-DAGFATVDGFDVVKE-PAEARRRLGFVSDSTGLYDRLTARENLEYFAGLY---GLKGDELTARLE 118 (218)
T ss_pred HHHHHHHHhCCcCC-CCceEEECCEEcccC-HHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHc---CCCHHHHHHHHH
Confidence 8999999 997554 689999999987642 2455678999999999999999999999877642 123333333332
Q ss_pred -------h----h-hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcCCCH
Q psy8953 80 -------L----E-LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVATIHTPSA 128 (286)
Q Consensus 80 -------l----~-~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~~~~ 128 (286)
+ . ....+||||+| ||++||+.++..++++|++++++|.|||+++|+++
T Consensus 119 ~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~- 197 (218)
T cd03266 119 ELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQ- 197 (218)
T ss_pred HHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-
Confidence 2 2 44568999999 99999999999999999999877999999999986
Q ss_pred HHHHHhhhHhhhcCCeeeccc
Q psy8953 129 LLFEKFDSLYALAKGHCIYRG 149 (286)
Q Consensus 129 ~~~~~~d~v~~l~~G~i~~~g 149 (286)
.+..++|++++|++|++++.|
T Consensus 198 ~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 198 EVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HHHHhcCEEEEEECCEEeecC
Confidence 466889999999999998653
No 85
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.89 E-value=3.9e-23 Score=184.89 Aligned_cols=150 Identities=19% Similarity=0.227 Sum_probs=121.4
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCe----ecCchh---hhccc-ceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQ----ERKSAC---IEQFL-KLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVST 71 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~----~~~~~~---~~~~~-~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~ 71 (286)
||||+++ +|+.+. .+|+|+++|+ ++...+ ...++ +.+|||||++.+++.+||.|+++|+++++ +.+.
T Consensus 63 KSTLlr~L~Gl~~p-~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~---g~~~ 138 (382)
T TIGR03415 63 KSSLLRAVNGLNPV-SRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALMPWLTVEENVAFGLEMQ---GMPE 138 (382)
T ss_pred HHHHHHHHhCCCCC-CCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcCCCCCcHHHHHHHHHHhc---CCCH
Confidence 8999999 997554 7899999997 332211 12222 57999999999999999999999998742 2344
Q ss_pred HHHHHHHh-------hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC-CCEE
Q psy8953 72 QEKKDQVS-------LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ-GRTV 119 (286)
Q Consensus 72 ~~~~~~v~-------l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~-g~ti 119 (286)
++.++++. |. ....+||||+| ||++||+.++.++.+.|.+++++ |+||
T Consensus 139 ~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TI 218 (382)
T TIGR03415 139 AERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTI 218 (382)
T ss_pred HHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence 54444433 22 45668999999 99999999999999999999875 9999
Q ss_pred EEEEcCCCHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 120 VATIHTPSALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 120 i~~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
|+++|++++ +..++||+++|++|+++..|+++++.
T Consensus 219 I~iTHdl~e-~~~l~DrI~vl~~G~iv~~g~~~ei~ 253 (382)
T TIGR03415 219 IFVSHDLDE-ALKIGNRIAIMEGGRIIQHGTPEEIV 253 (382)
T ss_pred EEEeCCHHH-HHHhCCEEEEEECCEEEEecCHHHHh
Confidence 999999864 66889999999999999999998775
No 86
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.89 E-value=3.3e-23 Score=168.30 Aligned_cols=154 Identities=18% Similarity=0.285 Sum_probs=125.1
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchh-hhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCC---HHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSAC-IEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVS---TQEKK 75 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~-~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~---~~~~~ 75 (286)
|||||+. +|..+. .+|+|.++|+++...+ .+..+.-++||||--..|+.+||+|||..++..+-..... .+++.
T Consensus 42 KTTlLkti~Gl~~~-~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~ 120 (237)
T COG0410 42 KTTLLKTIMGLVRP-RSGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVY 120 (237)
T ss_pred HHHHHHHHhCCCCC-CCeeEEECCeecCCCCHHHHHhCCeEeCcccccchhhCcHHHHHhhhhhcccccccccccHHHHH
Confidence 8999999 997665 5999999999998743 3445789999999999999999999999987632211111 22222
Q ss_pred HHHh-hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC-CCEEEEEEcCCCHH
Q psy8953 76 DQVS-LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ-GRTVVATIHTPSAL 129 (286)
Q Consensus 76 ~~v~-l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~-g~tii~~~h~~~~~ 129 (286)
+..- |. ...++||||+| ||.||-|.-..++++++++|+++ |+||+++|++.. .
T Consensus 121 ~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~-~ 199 (237)
T COG0410 121 ELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNAR-F 199 (237)
T ss_pred HHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHH-H
Confidence 2211 22 45679999999 99999999999999999999976 899999999986 4
Q ss_pred HHHHhhhHhhhcCCeeecccChhcHHH
Q psy8953 130 LFEKFDSLYALAKGHCIYRGSISRLVP 156 (286)
Q Consensus 130 ~~~~~d~v~~l~~G~i~~~g~~~~~~~ 156 (286)
..+.+||.+||.+|+|++.|+.+++..
T Consensus 200 Al~iaDr~yvle~Griv~~G~~~eL~~ 226 (237)
T COG0410 200 ALEIADRGYVLENGRIVLSGTAAELLA 226 (237)
T ss_pred HHHhhCEEEEEeCCEEEEecCHHHHhc
Confidence 668999999999999999999988763
No 87
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.89 E-value=3.4e-23 Score=173.19 Aligned_cols=140 Identities=22% Similarity=0.276 Sum_probs=111.8
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchh---hhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSAC---IEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKD 76 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~---~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~ 76 (286)
|||||++ +|..+. .+|+|.+||+++...+ ...+++.++||+|++.+++.+||.|++.|++... ....++..+
T Consensus 42 KSTLl~~l~Gl~~~-~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~ 117 (216)
T TIGR00960 42 KSTFLKLILGIEKP-TRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRII---GVPPRDANE 117 (216)
T ss_pred HHHHHHHHhCCCCC-CceEEEECCEehhhcChhHHHHHHHhceEEecCccccccccHHHHHHHHHHhc---CCCHHHHHH
Confidence 8999999 997543 6899999999875321 1235678999999999999999999999987642 122333333
Q ss_pred HHh-------hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcC
Q psy8953 77 QVS-------LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVATIHT 125 (286)
Q Consensus 77 ~v~-------l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~ 125 (286)
++. +. ....+||||+| ||++||+.++..+.++|++++++|.|||+++|+
T Consensus 118 ~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~ 197 (216)
T TIGR00960 118 RVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHD 197 (216)
T ss_pred HHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 332 22 44678999999 999999999999999999998779999999999
Q ss_pred CCHHHHHHhhhHhhhcCCee
Q psy8953 126 PSALLFEKFDSLYALAKGHC 145 (286)
Q Consensus 126 ~~~~~~~~~d~v~~l~~G~i 145 (286)
++ .+..++|++++|++|++
T Consensus 198 ~~-~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 198 IN-LVETYRHRTLTLSRGRL 216 (216)
T ss_pred HH-HHHHhCCEEEEEeCCcC
Confidence 86 46678999999999975
No 88
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=7.6e-23 Score=177.71 Aligned_cols=150 Identities=21% Similarity=0.280 Sum_probs=121.3
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCc--hhhhcccceeeEEecCcc-cCCCCCHHHHHHHHHhcCCCCCCCHHHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKS--ACIEQFLKLSCYIQQDDA-LRPKLTVTEAMMIASHLKLGFKVSTQEKKD 76 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~--~~~~~~~~~~g~v~Q~~~-~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~ 76 (286)
||||+++ +|..+. .+|+|.++|+++.. .....+++.+|||+|++. .+...||+|++.|+... ...+.++..+
T Consensus 45 KSTLl~~i~Gl~~p-~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~---~~~~~~~~~~ 120 (283)
T PRK13636 45 KSTLFQNLNGILKP-SSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVN---LKLPEDEVRK 120 (283)
T ss_pred HHHHHHHHhcCCCC-CccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhccccHHHHHHhHHHH---cCCCHHHHHH
Confidence 8999999 997654 78999999998742 122456688999999985 45678999999998763 2234455444
Q ss_pred HHh-------hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC-CCEEEEEEc
Q psy8953 77 QVS-------LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ-GRTVVATIH 124 (286)
Q Consensus 77 ~v~-------l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~-g~tii~~~h 124 (286)
++. |. ....+||||+| ||++||+.++..++++|++++++ |+|||+++|
T Consensus 121 ~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH 200 (283)
T PRK13636 121 RVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATH 200 (283)
T ss_pred HHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 433 22 44568999999 99999999999999999999875 999999999
Q ss_pred CCCHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 125 TPSALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 125 ~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
+++. +..++||+++|++|++++.|+++++.
T Consensus 201 ~~~~-~~~~~dri~~l~~G~i~~~g~~~~~~ 230 (283)
T PRK13636 201 DIDI-VPLYCDNVFVMKEGRVILQGNPKEVF 230 (283)
T ss_pred CHHH-HHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9974 66789999999999999999998875
No 89
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=6.6e-23 Score=174.02 Aligned_cols=151 Identities=18% Similarity=0.192 Sum_probs=118.7
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCC-CCCCHHHHHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLG-FKVSTQEKKDQV 78 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~-~~~~~~~~~~~v 78 (286)
||||+++ +|..+. .+|+|+++|+++... ...++.++||+|++.+++.+||.|++.|+...... .....++..+++
T Consensus 41 KSTLl~~l~Gl~~~-~~G~i~~~g~~~~~~--~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~ 117 (239)
T cd03296 41 KTTLLRLIAGLERP-DSGTILFGGEDATDV--PVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKV 117 (239)
T ss_pred HHHHHHHHhCCCCC-CceEEEECCEECCcC--CccccceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHH
Confidence 8999999 997543 689999999987542 12246799999999999999999999998753211 001222222222
Q ss_pred h-------hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC-CCEEEEEEcCC
Q psy8953 79 S-------LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ-GRTVVATIHTP 126 (286)
Q Consensus 79 ~-------l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~-g~tii~~~h~~ 126 (286)
. +. ....+||||+| ||++||+.++..++++|++++++ |+|||+++|++
T Consensus 118 ~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~ 197 (239)
T cd03296 118 HELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQ 197 (239)
T ss_pred HHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 2 22 34568999999 99999999999999999999875 99999999998
Q ss_pred CHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 127 SALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 127 ~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
+ .+...+|++++|++|++++.|+++++.
T Consensus 198 ~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 225 (239)
T cd03296 198 E-EALEVADRVVVMNKGRIEQVGTPDEVY 225 (239)
T ss_pred H-HHHHhCCEEEEEECCeEEEecCHHHHh
Confidence 6 466889999999999999999877653
No 90
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=4.9e-23 Score=175.12 Aligned_cols=150 Identities=17% Similarity=0.305 Sum_probs=120.3
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
|||||++ +|..+. .+|+|.+||+++...+...+++.++||+|++.+++.+||+|++.|+.++. ..+.++..+++.
T Consensus 40 KSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~ 115 (242)
T cd03295 40 KTTTMKMINRLIEP-TSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLL---KWPKEKIRERAD 115 (242)
T ss_pred HHHHHHHHhcCCCC-CCceEEECCeEcCcCChHHhhcceEEEccCccccCCCcHHHHHHHHHHHc---CCCHHHHHHHHH
Confidence 8999999 997543 68999999998764333455678999999999999999999999987642 123333322222
Q ss_pred -------hh-------hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC-CCEEEEEEcC
Q psy8953 80 -------LE-------LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ-GRTVVATIHT 125 (286)
Q Consensus 80 -------l~-------~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~-g~tii~~~h~ 125 (286)
+. ....+||||+| ||++||+.++..+.+.|++++++ |.|||+++|+
T Consensus 116 ~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~ 195 (242)
T cd03295 116 ELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHD 195 (242)
T ss_pred HHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecC
Confidence 21 23568899999 99999999999999999999875 9999999999
Q ss_pred CCHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 126 PSALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 126 ~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
++. +..++|++++|++|++++.|+++++.
T Consensus 196 ~~~-~~~~~d~i~~l~~G~i~~~~~~~~~~ 224 (242)
T cd03295 196 IDE-AFRLADRIAIMKNGEIVQVGTPDEIL 224 (242)
T ss_pred HHH-HHHhCCEEEEEECCEEEEecCHHHHH
Confidence 864 56889999999999999998876653
No 91
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=4.8e-23 Score=174.21 Aligned_cols=149 Identities=20% Similarity=0.271 Sum_probs=119.2
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhh---hcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACI---EQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKD 76 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~---~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~ 76 (286)
||||+++ +|..+. .+|+|.++|+++...+. ..+++.++||+|++.+++.+||+|++.|.+..+. ...++..+
T Consensus 44 KSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~---~~~~~~~~ 119 (233)
T cd03258 44 KSTLIRCINGLERP-TSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAG---VPKAEIEE 119 (233)
T ss_pred HHHHHHHHhCCCCC-CCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHHHHHHcC---CCHHHHHH
Confidence 8999999 997654 78999999998754211 2335789999999999999999999999876421 22222222
Q ss_pred HHh-------hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC-CCEEEEEEc
Q psy8953 77 QVS-------LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ-GRTVVATIH 124 (286)
Q Consensus 77 ~v~-------l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~-g~tii~~~h 124 (286)
++. +. ....+||||+| ||++||+.++..++++|++++++ |.|||+++|
T Consensus 120 ~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH 199 (233)
T cd03258 120 RVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITH 199 (233)
T ss_pred HHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence 222 22 34568999999 99999999999999999999875 999999999
Q ss_pred CCCHHHHHHhhhHhhhcCCeeecccChhcH
Q psy8953 125 TPSALLFEKFDSLYALAKGHCIYRGSISRL 154 (286)
Q Consensus 125 ~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 154 (286)
+++ .+..++|++++|++|++++.|+++++
T Consensus 200 ~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (233)
T cd03258 200 EME-VVKRICDRVAVMEKGEVVEEGTVEEV 228 (233)
T ss_pred CHH-HHHHhCCEEEEEECCEEEEecCHHHH
Confidence 986 46688999999999999999987655
No 92
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.89 E-value=9.3e-23 Score=171.67 Aligned_cols=146 Identities=36% Similarity=0.533 Sum_probs=116.6
Q ss_pred Cchhhhh-cCCCCC--CceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHH---
Q psy8953 1 MSIELNV-QSIRLT--GSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEK--- 74 (286)
Q Consensus 1 ~stll~~-~g~~~~--~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~--- 74 (286)
||||+++ +|..+. ..+|+|.++|+++.. ..+++.++||+|++.+++.+||.|++.|++....+.....+..
T Consensus 46 KSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~---~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ 122 (226)
T cd03234 46 KTTLLDAISGRVEGGGTTSGQILFNGQPRKP---DQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKR 122 (226)
T ss_pred HHHHHHHHhCccCCCCCCceEEEECCEECCh---HHhcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHH
Confidence 8999999 997652 479999999998764 4567889999999999999999999999876433211111111
Q ss_pred -HH-HHh---hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcC
Q psy8953 75 -KD-QVS---LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVATIHT 125 (286)
Q Consensus 75 -~~-~v~---l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~ 125 (286)
.+ .++ +. ....+||||+| ||++||+.++..+.++|+++++.|.|+|+++|+
T Consensus 123 ~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~ 202 (226)
T cd03234 123 VEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQ 202 (226)
T ss_pred HHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecC
Confidence 11 222 22 23568899999 999999999999999999998779999999999
Q ss_pred CCHHHHHHhhhHhhhcCCeeeccc
Q psy8953 126 PSALLFEKFDSLYALAKGHCIYRG 149 (286)
Q Consensus 126 ~~~~~~~~~d~v~~l~~G~i~~~g 149 (286)
+.+.+.+++|++++|++|++++.|
T Consensus 203 ~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 203 PRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred CCHHHHHhCCEEEEEeCCEEEecC
Confidence 865677899999999999998764
No 93
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.89 E-value=4.9e-23 Score=172.92 Aligned_cols=151 Identities=17% Similarity=0.265 Sum_probs=118.2
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhc-ccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHH---H
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQ-FLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEK---K 75 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~-~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~---~ 75 (286)
|||||++ +|+.+. .+|+|.++|+++...+... .++.++||+|++.+++.+||+|+++|+...... ....++. .
T Consensus 39 KSTLl~~l~Gl~~~-~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~-~~~~~~~~~~l 116 (222)
T cd03224 39 KTTLLKTIMGLLPP-RSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARRR-AKRKARLERVY 116 (222)
T ss_pred HHHHHHHHhCCCCC-CCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCcHHHHHHHHhhhcCc-hhHHHHHHHHH
Confidence 8999999 997654 6899999999875432222 246799999999999999999999998764211 1011111 1
Q ss_pred HHHh-hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcCCCHHH
Q psy8953 76 DQVS-LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVATIHTPSALL 130 (286)
Q Consensus 76 ~~v~-l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~~~~~~ 130 (286)
+.+. +. ....+||||+| ||++||+.++.+++++|++++++|.|||+++|+++ .+
T Consensus 117 ~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~ 195 (222)
T cd03224 117 ELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNAR-FA 195 (222)
T ss_pred HHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HH
Confidence 2221 21 34568999999 99999999999999999999878899999999986 46
Q ss_pred HHHhhhHhhhcCCeeecccChhcH
Q psy8953 131 FEKFDSLYALAKGHCIYRGSISRL 154 (286)
Q Consensus 131 ~~~~d~v~~l~~G~i~~~g~~~~~ 154 (286)
..++|++++|++|+++..|+++++
T Consensus 196 ~~~~d~i~~l~~G~i~~~~~~~~~ 219 (222)
T cd03224 196 LEIADRAYVLERGRVVLEGTAAEL 219 (222)
T ss_pred HHhccEEEEeeCCeEEEeCCHHHH
Confidence 688999999999999999887654
No 94
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=6.6e-23 Score=177.62 Aligned_cols=150 Identities=22% Similarity=0.322 Sum_probs=121.8
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcc-cCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDA-LRPKLTVTEAMMIASHLKLGFKVSTQEKKDQV 78 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~-~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v 78 (286)
||||+++ +|..+. .+|+|.++|+++...+...+++.+|||+|++. .+...||.|++.|.... ...++++..+++
T Consensus 43 KSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~---~~~~~~~~~~~~ 118 (277)
T PRK13652 43 KSTLFRHFNGILKP-TSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPIN---LGLDEETVAHRV 118 (277)
T ss_pred HHHHHHHHhcCCCC-CceEEEECCEECCcCCHHHHHhheEEEecCcccccccccHHHHHHhHHHH---cCCCHHHHHHHH
Confidence 8999999 996543 79999999998754333456678999999985 55678999999988753 123444444333
Q ss_pred h-------hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC-CCEEEEEEcCC
Q psy8953 79 S-------LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ-GRTVVATIHTP 126 (286)
Q Consensus 79 ~-------l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~-g~tii~~~h~~ 126 (286)
. +. ....+||||+| ||++||+.++..++++|++++++ |.|||+++|++
T Consensus 119 ~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~ 198 (277)
T PRK13652 119 SSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQL 198 (277)
T ss_pred HHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 3 22 34568999999 99999999999999999999885 99999999998
Q ss_pred CHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 127 SALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 127 ~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
+ .+.+++||+++|++|++++.|++++++
T Consensus 199 ~-~~~~~~drv~~l~~G~i~~~g~~~~~~ 226 (277)
T PRK13652 199 D-LVPEMADYIYVMDKGRIVAYGTVEEIF 226 (277)
T ss_pred H-HHHHhCCEEEEEECCeEEEECCHHHHh
Confidence 6 466889999999999999999998875
No 95
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.89 E-value=6.4e-23 Score=170.53 Aligned_cols=142 Identities=20% Similarity=0.281 Sum_probs=115.2
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
||||+++ +|..+. .+|+|.+||+++... ..+++.++||+|++.+++..||+|++.|...... ...++..+.++
T Consensus 39 KSTLl~~l~Gl~~~-~~G~i~~~g~~~~~~--~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~l~ 112 (208)
T cd03268 39 KTTTMKIILGLIKP-DSGEITFDGKSYQKN--IEALRRIGALIEAPGFYPNLTARENLRLLARLLG---IRKKRIDEVLD 112 (208)
T ss_pred HHHHHHHHhCCcCC-CceEEEECCCcccch--HHHHhhEEEecCCCccCccCcHHHHHHHHHHhcC---CcHHHHHHHHH
Confidence 8999999 997654 799999999987542 3456789999999999999999999999876321 12333332222
Q ss_pred ---hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHH
Q psy8953 80 ---LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVATIHTPSALLFE 132 (286)
Q Consensus 80 ---l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~~~~~~~~ 132 (286)
+. ....+|||||| ||++||+.++..++++|++++++|.|||+++|+++ .+..
T Consensus 113 ~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~ 191 (208)
T cd03268 113 VVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLS-EIQK 191 (208)
T ss_pred HcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHH
Confidence 22 45679999999 99999999999999999999888999999999986 4567
Q ss_pred HhhhHhhhcCCeeeccc
Q psy8953 133 KFDSLYALAKGHCIYRG 149 (286)
Q Consensus 133 ~~d~v~~l~~G~i~~~g 149 (286)
++|++++|++|++++.|
T Consensus 192 ~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 192 VADRIGIINKGKLIEEG 208 (208)
T ss_pred hcCEEEEEECCEEEecC
Confidence 89999999999998754
No 96
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.89 E-value=6.2e-23 Score=172.07 Aligned_cols=146 Identities=24% Similarity=0.278 Sum_probs=118.2
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
||||+++ +|..+. .+|+|+++|+++... ...+++.+|||+|++.+++.+||+|++.|..+.. ..+.++..+++.
T Consensus 41 KSTLl~~l~Gl~~~-~~G~i~~~g~~~~~~-~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~ 115 (220)
T cd03263 41 KTTTLKMLTGELRP-TSGTAYINGYSIRTD-RKAARQSLGYCPQFDALFDELTVREHLRFYARLK---GLPKSEIKEEVE 115 (220)
T ss_pred HHHHHHHHhCCCCC-CCcEEEECCEecccc-hHHHhhhEEEecCcCCccccCCHHHHHHHHHHHc---CCCHHHHHHHHH
Confidence 8999999 997543 799999999987542 1345678999999999999999999999987642 123333333322
Q ss_pred -------h----h-hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcCCCH
Q psy8953 80 -------L----E-LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVATIHTPSA 128 (286)
Q Consensus 80 -------l----~-~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~~~~ 128 (286)
+ . ....+||||+| ||++||+.++..+++.|+++++ +.|||+++|+++.
T Consensus 116 ~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~ 194 (220)
T cd03263 116 LLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK-GRSIILTTHSMDE 194 (220)
T ss_pred HHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEcCCHHH
Confidence 2 2 44668999999 9999999999999999999977 5999999999974
Q ss_pred HHHHHhhhHhhhcCCeeecccChhc
Q psy8953 129 LLFEKFDSLYALAKGHCIYRGSISR 153 (286)
Q Consensus 129 ~~~~~~d~v~~l~~G~i~~~g~~~~ 153 (286)
+..++|++++|++|+++..|++++
T Consensus 195 -~~~~~d~i~~l~~g~i~~~~~~~~ 218 (220)
T cd03263 195 -AEALCDRIAIMSDGKLRCIGSPQE 218 (220)
T ss_pred -HHHhcCEEEEEECCEEEecCCHHH
Confidence 667899999999999999988765
No 97
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.88 E-value=4.2e-23 Score=173.92 Aligned_cols=148 Identities=16% Similarity=0.138 Sum_probs=117.1
Q ss_pred Cchhhhh-cCCCC----CCceeEEEECCeecCchh--hhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHH
Q psy8953 1 MSIELNV-QSIRL----TGSSGKILVNGQERKSAC--IEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQE 73 (286)
Q Consensus 1 ~stll~~-~g~~~----~~~~G~i~~~g~~~~~~~--~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~ 73 (286)
||||+++ +|..+ ...+|+|+++|+++...+ ...+++.+|||+|++.++ .+||+|++.|+.+.... .+.++
T Consensus 39 KSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~~--~~~~~ 115 (227)
T cd03260 39 KSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHGI--KLKEE 115 (227)
T ss_pred HHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHhhEEEEecCchhc-cccHHHHHHhHHHhcCC--CcHHH
Confidence 8999999 99762 347999999999875422 244567899999999877 89999999998764211 11222
Q ss_pred HHHHH----h---hh-----h--hhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEE
Q psy8953 74 KKDQV----S---LE-----L--WNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVV 120 (286)
Q Consensus 74 ~~~~v----~---l~-----~--~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii 120 (286)
..+++ + +. . ...+|||||| ||++||+.++..++++|++++++ +|||
T Consensus 116 ~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii 194 (227)
T cd03260 116 LDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIV 194 (227)
T ss_pred HHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEE
Confidence 22222 2 21 2 3779999999 99999999999999999999887 9999
Q ss_pred EEEcCCCHHHHHHhhhHhhhcCCeeecccChhc
Q psy8953 121 ATIHTPSALLFEKFDSLYALAKGHCIYRGSISR 153 (286)
Q Consensus 121 ~~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 153 (286)
+++|+++ .+..++|++++|++|++++.|++++
T Consensus 195 ~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 195 IVTHNMQ-QAARVADRTAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred EEeccHH-HHHHhCCEEEEEeCCEEEEecCccc
Confidence 9999986 4668899999999999999988765
No 98
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=9.3e-23 Score=174.28 Aligned_cols=152 Identities=20% Similarity=0.231 Sum_probs=121.1
Q ss_pred Cchhhhh-cCCCCC----CceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHH
Q psy8953 1 MSIELNV-QSIRLT----GSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKK 75 (286)
Q Consensus 1 ~stll~~-~g~~~~----~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~ 75 (286)
||||+++ +|..+. ..+|+|.++|+++...+...+++.+|||+|++.+++.+||.|++.|+.+... ...+.++..
T Consensus 42 KSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~-~~~~~~~~~ 120 (250)
T PRK14247 42 KSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNR-LVKSKKELQ 120 (250)
T ss_pred HHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccCCCCcHHHHHHHHHHhcc-ccCCHHHHH
Confidence 8999999 997542 3799999999988654445667889999999998999999999999865321 111233333
Q ss_pred HHHh-------h--------h-hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEE
Q psy8953 76 DQVS-------L--------E-LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVV 120 (286)
Q Consensus 76 ~~v~-------l--------~-~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii 120 (286)
+++. + . ....+||||+| ||++||+.++..+.++|+++++ |+|||
T Consensus 121 ~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tii 199 (250)
T PRK14247 121 ERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK-DMTIV 199 (250)
T ss_pred HHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEE
Confidence 3332 2 1 33568899999 9999999999999999999965 89999
Q ss_pred EEEcCCCHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 121 ATIHTPSALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 121 ~~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
+++|+++ .+..++|++++|++|+++..|+++++.
T Consensus 200 i~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14247 200 LVTHFPQ-QAARISDYVAFLYKGQIVEWGPTREVF 233 (250)
T ss_pred EEeCCHH-HHHHhcCEEEEEECCeEEEECCHHHHH
Confidence 9999986 466789999999999999999887764
No 99
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=9.9e-23 Score=176.88 Aligned_cols=150 Identities=19% Similarity=0.169 Sum_probs=122.1
Q ss_pred Cchhhhh-cCCCCCC--ceeEEEECCeecCchhhhcccceeeEEecCcc-cCCCCCHHHHHHHHHhcCCCCCCCHHHHHH
Q psy8953 1 MSIELNV-QSIRLTG--SSGKILVNGQERKSACIEQFLKLSCYIQQDDA-LRPKLTVTEAMMIASHLKLGFKVSTQEKKD 76 (286)
Q Consensus 1 ~stll~~-~g~~~~~--~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~-~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~ 76 (286)
||||+++ +|..+.. .+|+|.+||+++........++.+|||+|++. +++..||+|++.|..+. ...+.++..+
T Consensus 46 KSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~---~~~~~~~~~~ 122 (282)
T PRK13640 46 KSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLEN---RAVPRPEMIK 122 (282)
T ss_pred HHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHh---CCCCHHHHHH
Confidence 8999999 9975432 45999999999865333445678999999985 78889999999998753 2234555554
Q ss_pred HHh-------hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC-CCEEEEEEc
Q psy8953 77 QVS-------LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ-GRTVVATIH 124 (286)
Q Consensus 77 ~v~-------l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~-g~tii~~~h 124 (286)
++. +. ....+||||+| ||++||+.++..+++.|++++++ |+|||+++|
T Consensus 123 ~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH 202 (282)
T PRK13640 123 IVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITH 202 (282)
T ss_pred HHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 444 22 34568999999 99999999999999999999875 999999999
Q ss_pred CCCHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 125 TPSALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 125 ~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
+++. + ..+|++++|++|++++.|+++++.
T Consensus 203 ~~~~-~-~~~d~i~~l~~G~i~~~g~~~~~~ 231 (282)
T PRK13640 203 DIDE-A-NMADQVLVLDDGKLLAQGSPVEIF 231 (282)
T ss_pred CHHH-H-HhCCEEEEEECCEEEEeCCHHHHh
Confidence 9975 4 579999999999999999988775
No 100
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=1e-22 Score=175.64 Aligned_cols=150 Identities=20% Similarity=0.232 Sum_probs=119.1
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhc----ccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQ----FLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKK 75 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~----~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~ 75 (286)
|||||++ +|..+. .+|+|.++|+++...+... .++.+|||+|++.+++.+||.|++.|.++.. .....+..
T Consensus 63 KSTLl~~L~Gl~~p-~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~ 138 (269)
T cd03294 63 KSTLLRCINRLIEP-TSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQ---GVPRAERE 138 (269)
T ss_pred HHHHHHHHhcCCCC-CCeEEEECCEEccccChhhhhhhhcCcEEEEecCcccCCCCcHHHHHHHHHHhc---CCCHHHHH
Confidence 8999999 997654 6899999999875422122 2357999999999999999999999987642 12233332
Q ss_pred HHHh-------hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC-CCEEEEEE
Q psy8953 76 DQVS-------LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ-GRTVVATI 123 (286)
Q Consensus 76 ~~v~-------l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~-g~tii~~~ 123 (286)
+++. +. ....+|||||| ||++||+.++..+.++|+++..+ |.|||+++
T Consensus 139 ~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~t 218 (269)
T cd03294 139 ERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFIT 218 (269)
T ss_pred HHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 3322 22 34568999999 99999999999999999999865 89999999
Q ss_pred cCCCHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 124 HTPSALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 124 h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
|+++ .+..++|++++|++|++++.|+++++.
T Consensus 219 H~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~ 249 (269)
T cd03294 219 HDLD-EALRLGDRIAIMKDGRLVQVGTPEEIL 249 (269)
T ss_pred CCHH-HHHHhcCEEEEEECCEEEEeCCHHHHH
Confidence 9986 466889999999999999999877664
No 101
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=1e-22 Score=176.10 Aligned_cols=149 Identities=19% Similarity=0.226 Sum_probs=120.9
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchh-hhcccceeeEEecCcc-cCCCCCHHHHHHHHHhcCCCCCCCHHHHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSAC-IEQFLKLSCYIQQDDA-LRPKLTVTEAMMIASHLKLGFKVSTQEKKDQ 77 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~-~~~~~~~~g~v~Q~~~-~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~ 77 (286)
|||||++ +|..+. .+|+|+++|.++...+ ...+++.+|||+|++. +++..||+|++.|..... ..++++..++
T Consensus 41 KSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~ 116 (274)
T PRK13644 41 KSTLALHLNGLLRP-QKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENL---CLPPIEIRKR 116 (274)
T ss_pred HHHHHHHHhcCCCC-CCceEEECCEECCccccHHHHHhheEEEEEChhhhcccchHHHHHHhhHHHc---CCCHHHHHHH
Confidence 8999999 997543 7899999999885421 2345678999999986 577899999999987632 2344444444
Q ss_pred Hh-------hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcCC
Q psy8953 78 VS-------LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVATIHTP 126 (286)
Q Consensus 78 v~-------l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~~ 126 (286)
+. +. ....+||||+| ||++||+.++..+++.|++++++|.|||+++|++
T Consensus 117 ~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~ 196 (274)
T PRK13644 117 VDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNL 196 (274)
T ss_pred HHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCH
Confidence 33 22 44668999999 9999999999999999999987899999999999
Q ss_pred CHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 127 SALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 127 ~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
+. + ..+|++++|++|++++.|+++++.
T Consensus 197 ~~-~-~~~d~v~~l~~G~i~~~g~~~~~~ 223 (274)
T PRK13644 197 EE-L-HDADRIIVMDRGKIVLEGEPENVL 223 (274)
T ss_pred HH-H-hhCCEEEEEECCEEEEECCHHHHh
Confidence 75 4 569999999999999999988765
No 102
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=6.4e-23 Score=170.86 Aligned_cols=142 Identities=22% Similarity=0.352 Sum_probs=114.5
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
||||+++ +|+.+. .+|+|.+||+++...+ ..+++.++||+|++.+++.+||.|++.|..++. ..+.++..+++.
T Consensus 38 KSTLl~~l~Gl~~~-~~G~i~~~g~~~~~~~-~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~ 112 (211)
T cd03264 38 KTTLMRILATLTPP-SSGTIRIDGQDVLKQP-QKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLK---GIPSKEVKARVD 112 (211)
T ss_pred HHHHHHHHhCCCCC-CccEEEECCCccccch-HHHHhheEEecCCCcccccCCHHHHHHHHHHHh---CCCHHHHHHHHH
Confidence 8999999 997543 6899999999876533 455678999999999999999999999987642 122333333322
Q ss_pred -------h----h-hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcCCCH
Q psy8953 80 -------L----E-LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVATIHTPSA 128 (286)
Q Consensus 80 -------l----~-~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~~~~ 128 (286)
+ . ....+||||+| ||++||+.++..+.+.|+++++ +.|||+++|+++.
T Consensus 113 ~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~~ 191 (211)
T cd03264 113 EVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE-DRIVILSTHIVED 191 (211)
T ss_pred HHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEcCCHHH
Confidence 2 2 44668999999 9999999999999999999986 5899999999864
Q ss_pred HHHHHhhhHhhhcCCeeeccc
Q psy8953 129 LLFEKFDSLYALAKGHCIYRG 149 (286)
Q Consensus 129 ~~~~~~d~v~~l~~G~i~~~g 149 (286)
+..++||+++|++|++++.|
T Consensus 192 -~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 192 -VESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred -HHHhCCEEEEEECCEEEecC
Confidence 66789999999999998754
No 103
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.88 E-value=1.1e-22 Score=179.91 Aligned_cols=152 Identities=18% Similarity=0.226 Sum_probs=122.6
Q ss_pred Cchhhhh-cCCCCCC--ceeEEEECCeecCchhhhcc---c-ceeeEEecCc--ccCCCCCHHHHHHHHHhcCCCCCCCH
Q psy8953 1 MSIELNV-QSIRLTG--SSGKILVNGQERKSACIEQF---L-KLSCYIQQDD--ALRPKLTVTEAMMIASHLKLGFKVST 71 (286)
Q Consensus 1 ~stll~~-~g~~~~~--~~G~i~~~g~~~~~~~~~~~---~-~~~g~v~Q~~--~~~~~~tV~e~l~f~~~~~~~~~~~~ 71 (286)
||||+++ +|+.+.. .+|+|+++|+++...+...+ + +.++|||||+ .+.+.+||.+++.+...... ..+.
T Consensus 55 KSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~--~~~~ 132 (330)
T PRK09473 55 KSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHK--GMSK 132 (330)
T ss_pred HHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhc--CCCH
Confidence 8999999 9976542 59999999999865333333 2 4799999998 47899999999998776422 2344
Q ss_pred HHHHHHHh-------h-------h-hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC-C
Q psy8953 72 QEKKDQVS-------L-------E-LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ-G 116 (286)
Q Consensus 72 ~~~~~~v~-------l-------~-~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~-g 116 (286)
++..+++. | . ..+.+||||+| ||++||+.++.+++++|++++++ |
T Consensus 133 ~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g 212 (330)
T PRK09473 133 AEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFN 212 (330)
T ss_pred HHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcC
Confidence 44443333 2 1 45678999999 99999999999999999999885 9
Q ss_pred CEEEEEEcCCCHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 117 RTVVATIHTPSALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 117 ~tii~~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
.|+|+++|+++ .+..++||+++|++|+|+..|++++++
T Consensus 213 ~til~iTHdl~-~~~~~~Dri~vm~~G~ive~g~~~~i~ 250 (330)
T PRK09473 213 TAIIMITHDLG-VVAGICDKVLVMYAGRTMEYGNARDVF 250 (330)
T ss_pred CEEEEEECCHH-HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 99999999986 466789999999999999999988875
No 104
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=6.1e-23 Score=174.44 Aligned_cols=153 Identities=22% Similarity=0.316 Sum_probs=118.6
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchh---hhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCC-----CCCCH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSAC---IEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLG-----FKVST 71 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~---~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~-----~~~~~ 71 (286)
||||+++ +|..+. .+|+|.+||+++...+ ...+++.++||+|++.+++.+||+|++.++...... .....
T Consensus 40 KSTLl~~l~Gl~~~-~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~ 118 (241)
T cd03256 40 KSTLLRCLNGLVEP-TSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFP 118 (241)
T ss_pred HHHHHHHHhCCcCC-CCceEEECCEeccccCHhHHHHHHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCc
Confidence 8999999 997543 6899999999876432 234567899999999999999999999986531100 01111
Q ss_pred HHHHHH----Hh---hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC-CCEE
Q psy8953 72 QEKKDQ----VS---LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ-GRTV 119 (286)
Q Consensus 72 ~~~~~~----v~---l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~-g~ti 119 (286)
++..++ ++ +. ....+|||||| ||++||+.++..+++.|++++++ |+||
T Consensus 119 ~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~ti 198 (241)
T cd03256 119 KEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITV 198 (241)
T ss_pred HHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence 111222 22 22 34568999999 99999999999999999999874 9999
Q ss_pred EEEEcCCCHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 120 VATIHTPSALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 120 i~~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
|+++|+++. +..++|++++|++|++++.|+++++.
T Consensus 199 i~~tH~~~~-~~~~~d~v~~l~~G~i~~~~~~~~~~ 233 (241)
T cd03256 199 IVSLHQVDL-AREYADRIVGLKDGRIVFDGPPAELT 233 (241)
T ss_pred EEEeCCHHH-HHHhCCEEEEEECCEEEeecCHHHhh
Confidence 999999974 66789999999999999999887753
No 105
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=1.1e-22 Score=169.78 Aligned_cols=142 Identities=22% Similarity=0.294 Sum_probs=113.8
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
||||+++ +|..+. .+|+|.++|+++... ...++.++||+|++.+++.+||+|++.|+.... ..+.++..+++.
T Consensus 39 KSTLl~~l~G~~~p-~~G~i~~~g~~~~~~--~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~ 112 (213)
T cd03259 39 KTTLLRLIAGLERP-DSGEILIDGRDVTGV--PPERRNIGMVFQDYALFPHLTVAENIAFGLKLR---GVPKAEIRARVR 112 (213)
T ss_pred HHHHHHHHhCCCCC-CCeEEEECCEEcCcC--chhhccEEEEcCchhhccCCcHHHHHHhHHHHc---CCCHHHHHHHHH
Confidence 8999999 997543 789999999987542 224568999999999999999999999987532 122333332322
Q ss_pred -------hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC-CCEEEEEEcCCC
Q psy8953 80 -------LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ-GRTVVATIHTPS 127 (286)
Q Consensus 80 -------l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~-g~tii~~~h~~~ 127 (286)
+. ....+|||||| ||++||+.++..++++|++++++ |.|||+++|+++
T Consensus 113 ~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~ 192 (213)
T cd03259 113 ELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQE 192 (213)
T ss_pred HHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH
Confidence 22 34568999999 99999999999999999999874 999999999986
Q ss_pred HHHHHHhhhHhhhcCCeeeccc
Q psy8953 128 ALLFEKFDSLYALAKGHCIYRG 149 (286)
Q Consensus 128 ~~~~~~~d~v~~l~~G~i~~~g 149 (286)
.+..++|++++|++|++++.|
T Consensus 193 -~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 193 -EALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred -HHHHhcCEEEEEECCEEEecC
Confidence 466889999999999998754
No 106
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=1.6e-22 Score=175.26 Aligned_cols=149 Identities=13% Similarity=0.150 Sum_probs=121.9
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcc-cCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDA-LRPKLTVTEAMMIASHLKLGFKVSTQEKKDQV 78 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~-~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v 78 (286)
|||||++ +|..+. .+|+|.++|+++...+...+++.+|||+|++. +++..||.|++.|+++.. ...+++..+++
T Consensus 46 KSTLl~~l~Gl~~~-~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~ 121 (277)
T PRK13642 46 KSTTARLIDGLFEE-FEGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQ---GIPREEMIKRV 121 (277)
T ss_pred HHHHHHHHhcCCCC-CCCEEEECCEECCcCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhHHHc---CCCHHHHHHHH
Confidence 8999999 997654 78999999999865334456788999999985 788899999999987631 22344444443
Q ss_pred h-------hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC-CCEEEEEEcCC
Q psy8953 79 S-------LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ-GRTVVATIHTP 126 (286)
Q Consensus 79 ~-------l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~-g~tii~~~h~~ 126 (286)
. +. ....+||||+| ||++||+.++..++++|++++++ |.|||+++|++
T Consensus 122 ~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~ 201 (277)
T PRK13642 122 DEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDL 201 (277)
T ss_pred HHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 3 22 34568999999 99999999999999999999886 99999999999
Q ss_pred CHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 127 SALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 127 ~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
+. +. .+|++++|++|+++..|+++++.
T Consensus 202 ~~-~~-~~d~i~~l~~G~i~~~g~~~~~~ 228 (277)
T PRK13642 202 DE-AA-SSDRILVMKAGEIIKEAAPSELF 228 (277)
T ss_pred HH-HH-hCCEEEEEECCEEEEeCCHHHHh
Confidence 75 43 59999999999999999988765
No 107
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.88 E-value=9.5e-23 Score=182.22 Aligned_cols=149 Identities=16% Similarity=0.234 Sum_probs=120.4
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchh----hhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSAC----IEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKK 75 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~----~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~ 75 (286)
|||||++ +|+.+. .+|+|.++|+++.... ....++.+|||+|++.+|+.+||+|+++|+.+.. ..++..
T Consensus 36 KSTLl~~iaGl~~p-~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~-----~~~~~~ 109 (354)
T TIGR02142 36 KTTLIRLIAGLTRP-DEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRGNLRYGMKRA-----RPSERR 109 (354)
T ss_pred HHHHHHHHhCCCCC-CceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHHHHHHHHhhcc-----ChhHHH
Confidence 8999999 997654 6899999999875311 1234678999999999999999999999987631 112222
Q ss_pred HHHh-------hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC-CCEEEEEE
Q psy8953 76 DQVS-------LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ-GRTVVATI 123 (286)
Q Consensus 76 ~~v~-------l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~-g~tii~~~ 123 (286)
+++. |. ....+|||||| ||++||+.++.++++.|++++++ |+|||+++
T Consensus 110 ~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivt 189 (354)
T TIGR02142 110 ISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVS 189 (354)
T ss_pred HHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 2222 22 44678999999 99999999999999999999876 99999999
Q ss_pred cCCCHHHHHHhhhHhhhcCCeeecccChhcHHH
Q psy8953 124 HTPSALLFEKFDSLYALAKGHCIYRGSISRLVP 156 (286)
Q Consensus 124 h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 156 (286)
|+++ .+..++|++++|++|+++..|+++++..
T Consensus 190 H~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (354)
T TIGR02142 190 HSLQ-EVLRLADRVVVLEDGRVAAAGPIAEVWA 221 (354)
T ss_pred cCHH-HHHHhCCEEEEEeCCEEEEECCHHHHhc
Confidence 9996 4668899999999999999999887753
No 108
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=1.2e-22 Score=176.75 Aligned_cols=150 Identities=19% Similarity=0.189 Sum_probs=120.2
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCch----hhhcccceeeEEecCcc-cCCCCCHHHHHHHHHhcCCCCCCCHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSA----CIEQFLKLSCYIQQDDA-LRPKLTVTEAMMIASHLKLGFKVSTQEK 74 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~----~~~~~~~~~g~v~Q~~~-~~~~~tV~e~l~f~~~~~~~~~~~~~~~ 74 (286)
|||||++ +|..+. .+|+|.++|+++... +....++.+|||+|++. .+..+||+|++.|+.+.. ....++.
T Consensus 46 KSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~ 121 (287)
T PRK13641 46 KSTLMQHFNALLKP-SSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNF---GFSEDEA 121 (287)
T ss_pred HHHHHHHHhcCCCC-CCcEEEECCEECccccccchHHHHHhceEEEEeChhhhhccchHHHHHHHHHHHc---CCCHHHH
Confidence 8999999 997554 799999999987421 12345678999999984 444689999999987642 2344554
Q ss_pred HHHHh-------hh------hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEE
Q psy8953 75 KDQVS-------LE------LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVAT 122 (286)
Q Consensus 75 ~~~v~-------l~------~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~ 122 (286)
.+++. |. ....+|||||| ||++||+.++..+.++|+++++.|+|||++
T Consensus 122 ~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvliv 201 (287)
T PRK13641 122 KEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILV 201 (287)
T ss_pred HHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 44443 21 23468899999 999999999999999999998779999999
Q ss_pred EcCCCHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 123 IHTPSALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 123 ~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
+|+++ .+..++|++++|++|++++.|+++++.
T Consensus 202 sH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13641 202 THNMD-DVAEYADDVLVLEHGKLIKHASPKEIF 233 (287)
T ss_pred eCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99986 466889999999999999999988765
No 109
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.88 E-value=9e-23 Score=182.12 Aligned_cols=149 Identities=17% Similarity=0.235 Sum_probs=121.4
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCch----hhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSA----CIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKK 75 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~----~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~ 75 (286)
|||||++ +|..+. .+|+|.++|+++... .....++.+|||+|++.+|+.+||+|++.|+.+. ...++..
T Consensus 37 KSTLl~~iaGl~~p-~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~-----~~~~~~~ 110 (352)
T PRK11144 37 KTSLINAISGLTRP-QKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMAK-----SMVAQFD 110 (352)
T ss_pred HHHHHHHHhCCCCC-CceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHHHHHHhhhhh-----hhHHHHH
Confidence 8999999 997543 689999999987431 0123467899999999999999999999998641 1123333
Q ss_pred HHHh---hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC-CCEEEEEEcCCC
Q psy8953 76 DQVS---LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ-GRTVVATIHTPS 127 (286)
Q Consensus 76 ~~v~---l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~-g~tii~~~h~~~ 127 (286)
+.++ +. ....+|||||| ||++||+.++..+++.|++++++ |+|+|+++|+++
T Consensus 111 ~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~ 190 (352)
T PRK11144 111 KIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLD 190 (352)
T ss_pred HHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHH
Confidence 3333 22 45679999999 99999999999999999999876 999999999986
Q ss_pred HHHHHHhhhHhhhcCCeeecccChhcHHH
Q psy8953 128 ALLFEKFDSLYALAKGHCIYRGSISRLVP 156 (286)
Q Consensus 128 ~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 156 (286)
++..++|++++|++|+++..|+++++..
T Consensus 191 -~~~~~~d~i~~l~~G~i~~~g~~~~i~~ 218 (352)
T PRK11144 191 -EILRLADRVVVLEQGKVKAFGPLEEVWA 218 (352)
T ss_pred -HHHHhCCEEEEEeCCEEEEecCHHHHHh
Confidence 4678899999999999999999988763
No 110
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.88 E-value=1.6e-22 Score=168.71 Aligned_cols=142 Identities=20% Similarity=0.272 Sum_probs=114.4
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
|||||++ +|..+. .+|+|+++|+++... ...++.++||+|++.+++..||+|++.+.++.. ....++.++++.
T Consensus 39 KSTLl~~l~G~~~~-~~G~v~~~g~~~~~~--~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~ 112 (213)
T cd03301 39 KTTTLRMIAGLEEP-TSGRIYIGGRDVTDL--PPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLR---KVPKDEIDERVR 112 (213)
T ss_pred HHHHHHHHhCCCCC-CceEEEECCEECCcC--CcccceEEEEecChhhccCCCHHHHHHHHHHhc---CCCHHHHHHHHH
Confidence 8999999 997543 789999999987542 223467999999999899999999999987542 223344333333
Q ss_pred -------hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC-CCEEEEEEcCCC
Q psy8953 80 -------LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ-GRTVVATIHTPS 127 (286)
Q Consensus 80 -------l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~-g~tii~~~h~~~ 127 (286)
+. ....+||||+| ||++||+.++..++++|++++++ |.|||+++|+++
T Consensus 113 ~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~ 192 (213)
T cd03301 113 EVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQV 192 (213)
T ss_pred HHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 22 34568999999 99999999999999999999875 999999999986
Q ss_pred HHHHHHhhhHhhhcCCeeeccc
Q psy8953 128 ALLFEKFDSLYALAKGHCIYRG 149 (286)
Q Consensus 128 ~~~~~~~d~v~~l~~G~i~~~g 149 (286)
.+...+|++++|++|++++.|
T Consensus 193 -~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 193 -EAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred -HHHHhcCeEEEEECCEEEecC
Confidence 466889999999999998765
No 111
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.88 E-value=1.9e-22 Score=171.27 Aligned_cols=151 Identities=20% Similarity=0.206 Sum_probs=119.6
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCch--hhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSA--CIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQ 77 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~--~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~ 77 (286)
||||+++ +|..+ ..+|+|++||+++... ....+++.++||+|++.+++.+||.|++.|+.... .....++..++
T Consensus 40 KSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~ 116 (240)
T PRK09493 40 KSTLLRCINKLEE-ITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRV--RGASKEEAEKQ 116 (240)
T ss_pred HHHHHHHHhCCCC-CCceEEEECCEECCcCChhHHHHhhceEEEecccccCCCCcHHHHHHhHHHHh--cCCCHHHHHHH
Confidence 8999999 99754 3789999999987542 12344678999999999999999999999976310 11223333333
Q ss_pred Hh-------hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcCC
Q psy8953 78 VS-------LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVATIHTP 126 (286)
Q Consensus 78 v~-------l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~~ 126 (286)
+. +. ....+||||+| ||++||+.++..+.++|++++++|+|||+++|++
T Consensus 117 ~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~ 196 (240)
T PRK09493 117 ARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEI 196 (240)
T ss_pred HHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 32 22 34568999999 9999999999999999999987799999999998
Q ss_pred CHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 127 SALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 127 ~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
+. +..++|++++|++|++++.|+++++.
T Consensus 197 ~~-~~~~~d~i~~l~~G~i~~~g~~~~~~ 224 (240)
T PRK09493 197 GF-AEKVASRLIFIDKGRIAEDGDPQVLI 224 (240)
T ss_pred HH-HHHhCCEEEEEECCEEEeeCCHHHHh
Confidence 64 66789999999999999999877653
No 112
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=2.1e-22 Score=173.81 Aligned_cols=149 Identities=19% Similarity=0.198 Sum_probs=120.5
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcc-cCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDA-LRPKLTVTEAMMIASHLKLGFKVSTQEKKDQV 78 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~-~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v 78 (286)
||||+++ +|..+. .+|+|.+||+++...+...+++.+|||+|++. +++..||.+++.|..+.. ..+.++..+++
T Consensus 48 KSTLl~~i~Gl~~~-~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~~~ 123 (269)
T PRK13648 48 KSTIAKLMIGIEKV-KSGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENH---AVPYDEMHRRV 123 (269)
T ss_pred HHHHHHHHhcCCCC-CceEEEECCEECCcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHhc---CCCHHHHHHHH
Confidence 8999999 997543 68999999998865433456778999999986 788899999999987632 22344433333
Q ss_pred h-------h----h-hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC-CCEEEEEEcCC
Q psy8953 79 S-------L----E-LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ-GRTVVATIHTP 126 (286)
Q Consensus 79 ~-------l----~-~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~-g~tii~~~h~~ 126 (286)
. + . ....+||||+| ||++||+.++..++++|++++++ |.|||+++|++
T Consensus 124 ~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~ 203 (269)
T PRK13648 124 SEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDL 203 (269)
T ss_pred HHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCc
Confidence 2 2 1 34568999999 99999999999999999999875 89999999999
Q ss_pred CHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 127 SALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 127 ~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
+. +.. +||+++|++|++++.|+++++.
T Consensus 204 ~~-~~~-~d~i~~l~~G~i~~~g~~~~~~ 230 (269)
T PRK13648 204 SE-AME-ADHVIVMNKGTVYKEGTPTEIF 230 (269)
T ss_pred hH-Hhc-CCEEEEEECCEEEEecCHHHHh
Confidence 75 444 9999999999999999988764
No 113
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=1.5e-22 Score=171.62 Aligned_cols=152 Identities=14% Similarity=0.183 Sum_probs=119.3
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhh-cccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHH---H
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIE-QFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEK---K 75 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~-~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~---~ 75 (286)
||||+++ +|..+. .+|+|.++|+++...+.. ..++.++||+|++.+++.+||.|++.++..... .....++. .
T Consensus 44 KSTLl~~l~G~~~p-~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~-~~~~~~~~~~~l 121 (237)
T PRK11614 44 KTTLLGTLCGDPRA-TSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAE-RDQFQERIKWVY 121 (237)
T ss_pred HHHHHHHHcCCCCC-CCceEEECCEecCCCCHHHHHHhCEEEeccCcccCCCCcHHHHHHHhhhccC-hhHHHHHHHHHH
Confidence 8999999 997543 789999999987643222 245789999999999999999999999764211 00001111 1
Q ss_pred HHHh-hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcCCCHHH
Q psy8953 76 DQVS-LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVATIHTPSALL 130 (286)
Q Consensus 76 ~~v~-l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~~~~~~ 130 (286)
+.+. +. ..+.+||||+| ||++||+.++..+.+.|++++++|.|||+++|+++ .+
T Consensus 122 ~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~ 200 (237)
T PRK11614 122 ELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNAN-QA 200 (237)
T ss_pred HHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HH
Confidence 2221 21 44668999999 99999999999999999999888999999999986 46
Q ss_pred HHHhhhHhhhcCCeeecccChhcHH
Q psy8953 131 FEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 131 ~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
.+++||+++|++|++++.|+++++.
T Consensus 201 ~~~~d~i~~l~~G~i~~~~~~~~~~ 225 (237)
T PRK11614 201 LKLADRGYVLENGHVVLEDTGDALL 225 (237)
T ss_pred HhhCCEEEEEeCCEEEeeCCHHHHh
Confidence 6889999999999999999988764
No 114
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=2.4e-22 Score=172.05 Aligned_cols=152 Identities=19% Similarity=0.185 Sum_probs=119.2
Q ss_pred Cchhhhh-cCCCCC----CceeEEEECCeecC--chhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHH
Q psy8953 1 MSIELNV-QSIRLT----GSSGKILVNGQERK--SACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQE 73 (286)
Q Consensus 1 ~stll~~-~g~~~~----~~~G~i~~~g~~~~--~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~ 73 (286)
||||+++ +|..+. ..+|+|+++|+++. ..+...+++.++||+|++.+++.+||.|++.|++..+. ...+.++
T Consensus 43 KSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~-~~~~~~~ 121 (253)
T PRK14267 43 KSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNG-LVKSKKE 121 (253)
T ss_pred HHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcC-ccCCHHH
Confidence 8999999 997543 26999999999875 21223456789999999999999999999999875321 1112333
Q ss_pred HHHHHh-------h--------h-hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCE
Q psy8953 74 KKDQVS-------L--------E-LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRT 118 (286)
Q Consensus 74 ~~~~v~-------l--------~-~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~t 118 (286)
..+++. + . ....+|||||| ||++||+.++..+.++|+++++ +.|
T Consensus 122 ~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~t 200 (253)
T PRK14267 122 LDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYT 200 (253)
T ss_pred HHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCE
Confidence 332222 1 1 33568899999 9999999999999999999976 689
Q ss_pred EEEEEcCCCHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 119 VVATIHTPSALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 119 ii~~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
||+++|+++ .+...+|++++|++|++++.|+++++.
T Consensus 201 iii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (253)
T PRK14267 201 IVLVTHSPA-QAARVSDYVAFLYLGKLIEVGPTRKVF 236 (253)
T ss_pred EEEEECCHH-HHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999986 466889999999999999999887664
No 115
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.88 E-value=1.8e-22 Score=172.13 Aligned_cols=154 Identities=19% Similarity=0.251 Sum_probs=126.6
Q ss_pred Cchhhhh-cCCCC-C---CceeEEEECCeecCchhhhc---c-cceeeEEecCcc--cCCCCCHHHHHHHHHhcCCCCCC
Q psy8953 1 MSIELNV-QSIRL-T---GSSGKILVNGQERKSACIEQ---F-LKLSCYIQQDDA--LRPKLTVTEAMMIASHLKLGFKV 69 (286)
Q Consensus 1 ~stll~~-~g~~~-~---~~~G~i~~~g~~~~~~~~~~---~-~~~~g~v~Q~~~--~~~~~tV~e~l~f~~~~~~~~~~ 69 (286)
|||+... .|+.+ . -.+|+|.++|+++...+-+. + .+.++||||||. +-|..||.+-+.=.++.+....
T Consensus 44 KS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~- 122 (316)
T COG0444 44 KSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGL- 122 (316)
T ss_pred HHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcch-
Confidence 7999999 99765 2 27899999999886544332 2 479999999994 6799999999998887543211
Q ss_pred CHHHHHHHHh--------------hh-hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC
Q psy8953 70 STQEKKDQVS--------------LE-LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ 115 (286)
Q Consensus 70 ~~~~~~~~v~--------------l~-~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~ 115 (286)
+.+|.++++. +. ++|.+|||+|| ||+.||...+.+++++|++|+++
T Consensus 123 ~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e 202 (316)
T COG0444 123 SKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQRE 202 (316)
T ss_pred hhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHh
Confidence 3444443332 34 88999999999 99999999999999999999985
Q ss_pred -CCEEEEEEcCCCHHHHHHhhhHhhhcCCeeecccChhcHHH
Q psy8953 116 -GRTVVATIHTPSALLFEKFDSLYALAKGHCIYRGSISRLVP 156 (286)
Q Consensus 116 -g~tii~~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 156 (286)
|+++|+++|++. .+++++|||+||..|+||..|+.++++.
T Consensus 203 ~~~aiilITHDl~-vva~~aDri~VMYaG~iVE~g~~~~i~~ 243 (316)
T COG0444 203 KGTALILITHDLG-VVAEIADRVAVMYAGRIVEEGPVEEIFK 243 (316)
T ss_pred cCCEEEEEeCCHH-HHHHhcceEEEEECcEEEEeCCHHHHhc
Confidence 999999999996 6889999999999999999999998863
No 116
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=3.2e-22 Score=173.17 Aligned_cols=150 Identities=24% Similarity=0.288 Sum_probs=119.6
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCc--hhhhcccceeeEEecCcc-cCCCCCHHHHHHHHHhcCCCCCCCHHHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKS--ACIEQFLKLSCYIQQDDA-LRPKLTVTEAMMIASHLKLGFKVSTQEKKD 76 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~--~~~~~~~~~~g~v~Q~~~-~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~ 76 (286)
||||+++ +|..+. .+|+|.++|+++.. .+...+++.++||+|++. .+...||+|++.|+.... ....+++.+
T Consensus 41 KSTLl~~i~Gl~~~-~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~---~~~~~~~~~ 116 (275)
T PRK13639 41 KSTLFLHFNGILKP-TSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNL---GLSKEEVEK 116 (275)
T ss_pred HHHHHHHHhCCCCC-CccEEEECCEECccccchHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHc---CCCHHHHHH
Confidence 8999999 997554 68999999998742 122345678999999984 555679999999876421 223444433
Q ss_pred HHh-------hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcC
Q psy8953 77 QVS-------LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVATIHT 125 (286)
Q Consensus 77 ~v~-------l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~ 125 (286)
++. +. ....+||||+| ||++||+.++..++++|++++++|.|||+++|+
T Consensus 117 ~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~ 196 (275)
T PRK13639 117 RVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHD 196 (275)
T ss_pred HHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecC
Confidence 333 22 44668999999 999999999999999999998779999999999
Q ss_pred CCHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 126 PSALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 126 ~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
++ .+..++|++++|++|++++.|+++++.
T Consensus 197 ~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 225 (275)
T PRK13639 197 VD-LVPVYADKVYVMSDGKIIKEGTPKEVF 225 (275)
T ss_pred HH-HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 86 466789999999999999999988875
No 117
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=3.1e-22 Score=172.94 Aligned_cols=149 Identities=19% Similarity=0.226 Sum_probs=119.9
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcc-cCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDA-LRPKLTVTEAMMIASHLKLGFKVSTQEKKDQV 78 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~-~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v 78 (286)
|||||++ +|..+. .+|+|++||+++...+...+++.+|||+|++. .++.+||.|++.|++... ..+.++..+++
T Consensus 48 KSTLl~~l~Gl~~p-~~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~ 123 (271)
T PRK13632 48 KSTISKILTGLLKP-QSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENK---KVPPKKMKDII 123 (271)
T ss_pred HHHHHHHHhcCCCC-CCceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHc---CCCHHHHHHHH
Confidence 8999999 997654 68999999999864333456788999999985 788899999999987532 22344433333
Q ss_pred h-------hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC-CCEEEEEEcCC
Q psy8953 79 S-------LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ-GRTVVATIHTP 126 (286)
Q Consensus 79 ~-------l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~-g~tii~~~h~~ 126 (286)
. +. ....+||||+| ||++||+.++..++++|++++++ +.|||+++|++
T Consensus 124 ~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~ 203 (271)
T PRK13632 124 DDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDM 203 (271)
T ss_pred HHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEech
Confidence 2 22 34568999999 99999999999999999999876 59999999999
Q ss_pred CHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 127 SALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 127 ~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
+. + ..+|++++|++|+++..|+++++.
T Consensus 204 ~~-~-~~~d~v~~l~~G~i~~~g~~~~~~ 230 (271)
T PRK13632 204 DE-A-ILADKVIVFSEGKLIAQGKPKEIL 230 (271)
T ss_pred hH-H-hhCCEEEEEECCEEEEecCHHHHh
Confidence 75 4 479999999999999999887754
No 118
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=2.3e-22 Score=177.56 Aligned_cols=152 Identities=17% Similarity=0.178 Sum_probs=121.3
Q ss_pred Cchhhhh-cCCCCC---CceeEEEECCeecCchhhhcc----cceeeEEecCcc--cCCCCCHHHHHHHHHhcCCCCCCC
Q psy8953 1 MSIELNV-QSIRLT---GSSGKILVNGQERKSACIEQF----LKLSCYIQQDDA--LRPKLTVTEAMMIASHLKLGFKVS 70 (286)
Q Consensus 1 ~stll~~-~g~~~~---~~~G~i~~~g~~~~~~~~~~~----~~~~g~v~Q~~~--~~~~~tV~e~l~f~~~~~~~~~~~ 70 (286)
||||+++ +|+.+. ..+|+|+++|+++...+.+.+ ++.++||||++. +.+.+||.+.+++...... ...
T Consensus 46 KSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~--~~~ 123 (326)
T PRK11022 46 KSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQ--GGN 123 (326)
T ss_pred HHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhc--CCC
Confidence 8999999 997542 268999999999864322322 247999999984 7899999999988776421 123
Q ss_pred HHHHHHHHh-------h-------h-hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC-
Q psy8953 71 TQEKKDQVS-------L-------E-LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ- 115 (286)
Q Consensus 71 ~~~~~~~v~-------l-------~-~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~- 115 (286)
.++.++++. | . ..+.+||||+| ||++||+.++.+++++|++++++
T Consensus 124 ~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~ 203 (326)
T PRK11022 124 KKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKE 203 (326)
T ss_pred HHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhc
Confidence 444443333 2 1 45679999999 99999999999999999999874
Q ss_pred CCEEEEEEcCCCHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 116 GRTVVATIHTPSALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 116 g~tii~~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
|.|+|+++|+++ .+..++||+++|++|+++..|++++++
T Consensus 204 g~til~iTHdl~-~~~~~adri~vm~~G~ive~g~~~~~~ 242 (326)
T PRK11022 204 NMALVLITHDLA-LVAEAAHKIIVMYAGQVVETGKAHDIF 242 (326)
T ss_pred CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 999999999986 466889999999999999999988875
No 119
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=2.5e-22 Score=174.21 Aligned_cols=150 Identities=17% Similarity=0.226 Sum_probs=120.3
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCch-hhhcccceeeEEecCcc-cCCCCCHHHHHHHHHhcCCCCCCCHHHHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSA-CIEQFLKLSCYIQQDDA-LRPKLTVTEAMMIASHLKLGFKVSTQEKKDQ 77 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~-~~~~~~~~~g~v~Q~~~-~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~ 77 (286)
||||+++ +|..+. .+|+|.++|+++... ....+++.+|||+|++. ++...||.|+++|+++.. ..+..+.+++
T Consensus 49 KSTLl~~l~Gl~~~-~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~---~~~~~~~~~~ 124 (280)
T PRK13633 49 KSTIAKHMNALLIP-SEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENL---GIPPEEIRER 124 (280)
T ss_pred HHHHHHHHhCCCCC-CCceEEECCEeccccccHHHHhhheEEEecChhhhhccccHHHHHHhhHhhc---CCCHHHHHHH
Confidence 8999999 997654 789999999988542 12345688999999985 455679999999987632 2334444443
Q ss_pred Hh-------hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC-CCEEEEEEcC
Q psy8953 78 VS-------LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ-GRTVVATIHT 125 (286)
Q Consensus 78 v~-------l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~-g~tii~~~h~ 125 (286)
+. |. ....+||||+| ||++||+.++..++++|++++++ |+|||+++|+
T Consensus 125 ~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~ 204 (280)
T PRK13633 125 VDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHY 204 (280)
T ss_pred HHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 33 22 45678999999 99999999999999999999874 9999999999
Q ss_pred CCHHHHHHhhhHhhhcCCeeecccChhcHHH
Q psy8953 126 PSALLFEKFDSLYALAKGHCIYRGSISRLVP 156 (286)
Q Consensus 126 ~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 156 (286)
++. +.. +|++++|++|++++.|+++++..
T Consensus 205 ~~~-~~~-~d~v~~l~~G~i~~~g~~~~~~~ 233 (280)
T PRK13633 205 MEE-AVE-ADRIIVMDSGKVVMEGTPKEIFK 233 (280)
T ss_pred hHH-Hhc-CCEEEEEECCEEEEecCHHHHhc
Confidence 975 444 99999999999999999888753
No 120
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.87 E-value=2.7e-22 Score=173.15 Aligned_cols=151 Identities=18% Similarity=0.195 Sum_probs=119.0
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchh---hhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSAC---IEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKD 76 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~---~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~ 76 (286)
|||||++ +|..+. .+|+|+++|+++...+ ...+++.++||+|++.+++.+||.|++.|...... ..+.++..+
T Consensus 46 KSTLl~~l~Gl~~p-~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~ 122 (269)
T PRK11831 46 KTTLLRLIGGQIAP-DHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHT--QLPAPLLHS 122 (269)
T ss_pred HHHHHHHHhCCCCC-CCceEEECCEEccccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHcc--CCCHHHHHH
Confidence 8999999 997643 6899999999875321 12345679999999999999999999998764211 122333222
Q ss_pred HHh-------hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC-CCEEEEEEc
Q psy8953 77 QVS-------LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ-GRTVVATIH 124 (286)
Q Consensus 77 ~v~-------l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~-g~tii~~~h 124 (286)
++. +. ....+|||||| ||++||+.++..++++|++++++ |.|||+++|
T Consensus 123 ~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH 202 (269)
T PRK11831 123 TVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSH 202 (269)
T ss_pred HHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEec
Confidence 222 22 34679999999 99999999999999999999875 899999999
Q ss_pred CCCHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 125 TPSALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 125 ~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
+++ .+..++|++++|++|++++.|+++++.
T Consensus 203 ~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (269)
T PRK11831 203 DVP-EVLSIADHAYIVADKKIVAHGSAQALQ 232 (269)
T ss_pred CHH-HHHHhhCEEEEEECCEEEEeCCHHHHh
Confidence 986 466889999999999999999877654
No 121
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.87 E-value=3.3e-22 Score=170.91 Aligned_cols=151 Identities=19% Similarity=0.224 Sum_probs=119.6
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCch--------hhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSA--------CIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVST 71 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~--------~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~ 71 (286)
||||+++ +|..+. .+|+|.++|+++... +...+++.+|||+|++.+++..||.|++.|+.... ...+.
T Consensus 42 KSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~--~~~~~ 118 (250)
T PRK11264 42 KTTLLRCINLLEQP-EAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIV--KGEPK 118 (250)
T ss_pred HHHHHHHHhcCCCC-CCeEEEECCEEccccccccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHh--cCCCH
Confidence 8999999 997543 689999999987531 12345678999999999999999999999865311 11233
Q ss_pred HHHHHHHh-------hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEE
Q psy8953 72 QEKKDQVS-------LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVV 120 (286)
Q Consensus 72 ~~~~~~v~-------l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii 120 (286)
++..+++. +. ....+||||+| ||++||+.++..++++|++++++|.|||
T Consensus 119 ~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi 198 (250)
T PRK11264 119 EEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMV 198 (250)
T ss_pred HHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEE
Confidence 33333332 22 34568999999 9999999999999999999987899999
Q ss_pred EEEcCCCHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 121 ATIHTPSALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 121 ~~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
+++|+++ .+..++|++++|++|++++.|+++++.
T Consensus 199 ~~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 232 (250)
T PRK11264 199 IVTHEMS-FARDVADRAIFMDQGRIVEQGPAKALF 232 (250)
T ss_pred EEeCCHH-HHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 9999986 466889999999999999999877653
No 122
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=2.1e-22 Score=167.61 Aligned_cols=140 Identities=22% Similarity=0.385 Sum_probs=113.4
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
|||||++ +|..+. .+|+|.+||+++.. ..++.++||+|++.+++.+||+|++.|..+.+ ..+..+..+++.
T Consensus 39 KSTLl~~l~G~~~~-~~G~i~~~g~~~~~----~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~ 110 (210)
T cd03269 39 KTTTIRMILGIILP-DSGEVLFDGKPLDI----AARNRIGYLPEERGLYPKMKVIDQLVYLAQLK---GLKKEEARRRID 110 (210)
T ss_pred HHHHHHHHhCCCCC-CceEEEECCCchhH----HHHccEEEeccCCcCCcCCcHHHHHHHHHHHc---CCChHHHHHHHH
Confidence 8999999 997543 69999999998753 34578999999999999999999999987642 122333333322
Q ss_pred -------hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcCCCH
Q psy8953 80 -------LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVATIHTPSA 128 (286)
Q Consensus 80 -------l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~~~~ 128 (286)
+. ....+|||||| ||++||+.++..+.+.|++++++|.|||+++|+++.
T Consensus 111 ~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~ 190 (210)
T cd03269 111 EWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMEL 190 (210)
T ss_pred HHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHH
Confidence 22 34568999999 999999999999999999998778999999999864
Q ss_pred HHHHHhhhHhhhcCCeeeccc
Q psy8953 129 LLFEKFDSLYALAKGHCIYRG 149 (286)
Q Consensus 129 ~~~~~~d~v~~l~~G~i~~~g 149 (286)
+..++|++++|++|++++.|
T Consensus 191 -~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 191 -VEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred -HHHhhhEEEEEeCCEEEecC
Confidence 66789999999999998653
No 123
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=2.9e-22 Score=169.42 Aligned_cols=144 Identities=19% Similarity=0.244 Sum_probs=113.6
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhc---c-cceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQ---F-LKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKK 75 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~---~-~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~ 75 (286)
||||+++ +|..+. .+|+|++||+++...+... + ++.+|||+|++.+++.+||+|++.|.+..+ ..+.++.+
T Consensus 48 KSTLl~~l~Gl~~~-~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~ 123 (233)
T PRK11629 48 KSTLLHLLGGLDTP-TSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIG---KKKPAEIN 123 (233)
T ss_pred HHHHHHHHhcCCCC-CceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHH
Confidence 8999999 997543 7999999999886432221 2 257999999999999999999999987632 12233333
Q ss_pred HHHh-------hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHh-CCCEEEEEE
Q psy8953 76 DQVS-------LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAK-QGRTVVATI 123 (286)
Q Consensus 76 ~~v~-------l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~-~g~tii~~~ 123 (286)
+++. +. ....+|||||| ||++||+.++..+.++|+++++ .|.|||+++
T Consensus 124 ~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~s 203 (233)
T PRK11629 124 SRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVT 203 (233)
T ss_pred HHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 3333 21 34568999999 9999999999999999999986 599999999
Q ss_pred cCCCHHHHHHhhhHhhhcCCeeecccC
Q psy8953 124 HTPSALLFEKFDSLYALAKGHCIYRGS 150 (286)
Q Consensus 124 h~~~~~~~~~~d~v~~l~~G~i~~~g~ 150 (286)
|+++. + ..+|++++|++|+++..++
T Consensus 204 H~~~~-~-~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 204 HDLQL-A-KRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred CCHHH-H-HhhCEEEEEECCEEEEEec
Confidence 99864 4 4468999999999998765
No 124
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.87 E-value=3.6e-22 Score=171.26 Aligned_cols=150 Identities=21% Similarity=0.251 Sum_probs=118.7
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCch-------------hhhcccceeeEEecCcccCCCCCHHHHHHHHHh-cCC
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSA-------------CIEQFLKLSCYIQQDDALRPKLTVTEAMMIASH-LKL 65 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~-------------~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~-~~~ 65 (286)
||||+++ +|..+. .+|+|.++|+++... ....+++.++||+|++.+++.+||+|++.|++. ..
T Consensus 44 KSTLl~~i~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~- 121 (257)
T PRK10619 44 KSTFLRCINFLEKP-SEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL- 121 (257)
T ss_pred HHHHHHHHhCCCCC-CCeEEEECCEEcccccccccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhC-
Confidence 8999999 997653 689999999987420 123456789999999999999999999998653 21
Q ss_pred CCCCCHHHHHHHHh-------hh------hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHH
Q psy8953 66 GFKVSTQEKKDQVS-------LE------LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLA 113 (286)
Q Consensus 66 ~~~~~~~~~~~~v~-------l~------~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~ 113 (286)
....++..+++. +. ....+||||+| ||++||+.++..++++|++++
T Consensus 122 --~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~ 199 (257)
T PRK10619 122 --GLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLA 199 (257)
T ss_pred --CCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 122333333322 21 23468899999 999999999999999999998
Q ss_pred hCCCEEEEEEcCCCHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 114 KQGRTVVATIHTPSALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 114 ~~g~tii~~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
+.|+|||+++|+++ .+..++||+++|++|++++.|++++..
T Consensus 200 ~~g~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 240 (257)
T PRK10619 200 EEGKTMVVVTHEMG-FARHVSSHVIFLHQGKIEEEGAPEQLF 240 (257)
T ss_pred hcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEEeCCHHHhh
Confidence 78999999999986 466789999999999999999877654
No 125
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=5.4e-22 Score=172.28 Aligned_cols=150 Identities=19% Similarity=0.198 Sum_probs=118.2
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCch----hhhcccceeeEEecCcc-cCCCCCHHHHHHHHHhcCCCCCCCHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSA----CIEQFLKLSCYIQQDDA-LRPKLTVTEAMMIASHLKLGFKVSTQEK 74 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~----~~~~~~~~~g~v~Q~~~-~~~~~tV~e~l~f~~~~~~~~~~~~~~~ 74 (286)
|||||++ +|..+. .+|+|.++|+++... +...+++.+|||+|++. .+...||+|++.|..+.. ..+.++.
T Consensus 46 KSTLl~~i~Gl~~p-~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~ 121 (280)
T PRK13649 46 KSTIMQLLNGLHVP-TQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNF---GVSQEEA 121 (280)
T ss_pred HHHHHHHHhCCCCC-CceEEEECCEEccccccccCHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHc---CCCHHHH
Confidence 8999999 997544 789999999987531 12345678999999983 444579999999987632 2234443
Q ss_pred HHHHh-------hh------hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEE
Q psy8953 75 KDQVS-------LE------LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVAT 122 (286)
Q Consensus 75 ~~~v~-------l~------~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~ 122 (286)
.+++. +. ....+|||||| ||++||+.++..+.+.|++++++|.|||++
T Consensus 122 ~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiiv 201 (280)
T PRK13649 122 EALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLV 201 (280)
T ss_pred HHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 33332 21 23568899999 999999999999999999998779999999
Q ss_pred EcCCCHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 123 IHTPSALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 123 ~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
+|+++ .+..++|++++|++|++++.|+++++.
T Consensus 202 sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (280)
T PRK13649 202 THLMD-DVANYADFVYVLEKGKLVLSGKPKDIF 233 (280)
T ss_pred eccHH-HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99986 466889999999999999999988764
No 126
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=5.7e-22 Score=171.28 Aligned_cols=150 Identities=17% Similarity=0.245 Sum_probs=118.8
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCc--hhhhcccceeeEEecCcc-cCCCCCHHHHHHHHHhcCCCCCCCHHHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKS--ACIEQFLKLSCYIQQDDA-LRPKLTVTEAMMIASHLKLGFKVSTQEKKD 76 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~--~~~~~~~~~~g~v~Q~~~-~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~ 76 (286)
|||||++ +|..+. .+|+|.++|+++.. .+...+++.+|||+|++. ++...||.|++.|.++.. ....++..+
T Consensus 40 KSTLl~~l~Gl~~p-~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~ 115 (271)
T PRK13638 40 KSTLFMNLSGLLRP-QKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNL---GVPEAEITR 115 (271)
T ss_pred HHHHHHHHcCCCCC-CccEEEECCEEcccccCCHHHHHhheEEEeeChhhccccccHHHHHHHHHHHc---CCCHHHHHH
Confidence 8999999 997543 68999999998742 112344678999999986 456778999999986532 223444333
Q ss_pred HHh-------hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcC
Q psy8953 77 QVS-------LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVATIHT 125 (286)
Q Consensus 77 ~v~-------l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~ 125 (286)
++. +. ....+||||+| ||++||+.++..+.++|++++++|.|||+++|+
T Consensus 116 ~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~ 195 (271)
T PRK13638 116 RVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHD 195 (271)
T ss_pred HHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 332 22 34568999999 999999999999999999998779999999999
Q ss_pred CCHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 126 PSALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 126 ~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
++ .+..++|++++|++|++++.|+++++.
T Consensus 196 ~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 224 (271)
T PRK13638 196 ID-LIYEISDAVYVLRQGQILTHGAPGEVF 224 (271)
T ss_pred HH-HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 86 466889999999999999999988765
No 127
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=3.7e-22 Score=169.62 Aligned_cols=151 Identities=16% Similarity=0.309 Sum_probs=119.7
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhh-hcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACI-EQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQV 78 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~-~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v 78 (286)
||||+++ +|..+. .+|+|.++|.++...+. ..+++.++||+|++.+++.+||.|++.+..++.. ..+.++..+++
T Consensus 42 KSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~ 118 (241)
T PRK10895 42 KTTTFYMVVGIVPR-DAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRD--DLSAEQREDRA 118 (241)
T ss_pred HHHHHHHHhCCCCC-CCcEEEECCEECCCCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhhhccc--ccCHHHHHHHH
Confidence 8999999 997543 68999999998754222 2245679999999999999999999998765321 12233333332
Q ss_pred h-------hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcCCC
Q psy8953 79 S-------LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVATIHTPS 127 (286)
Q Consensus 79 ~-------l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~~~ 127 (286)
. +. ....+||||+| ||++||+.++..+.++|+.++++|.|||+++|+++
T Consensus 119 ~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~ 198 (241)
T PRK10895 119 NELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVR 198 (241)
T ss_pred HHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHH
Confidence 2 22 34568999999 99999999999999999999878999999999986
Q ss_pred HHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 128 ALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 128 ~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
.+..++|++++|++|++++.|+++++.
T Consensus 199 -~~~~~~d~v~~l~~G~i~~~~~~~~~~ 225 (241)
T PRK10895 199 -ETLAVCERAYIVSQGHLIAHGTPTEIL 225 (241)
T ss_pred -HHHHhcCEEEEEeCCeEEeeCCHHHHh
Confidence 466889999999999999999887664
No 128
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=4e-22 Score=176.04 Aligned_cols=151 Identities=19% Similarity=0.278 Sum_probs=122.6
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchh---hhcccceeeEEecCc--ccCCCCCHHHHHHHHHhcCCCCCCCHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSAC---IEQFLKLSCYIQQDD--ALRPKLTVTEAMMIASHLKLGFKVSTQEK 74 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~---~~~~~~~~g~v~Q~~--~~~~~~tV~e~l~f~~~~~~~~~~~~~~~ 74 (286)
||||+++ +|+.+. .+|+|+++|+++...+ .+.+++.+||||||+ .+.+.+||.+.+.+...... ....++.
T Consensus 54 KSTLl~~l~gl~~p-~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~--~~~~~~~ 130 (327)
T PRK11308 54 KSTLARLLTMIETP-TGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINT--SLSAAER 130 (327)
T ss_pred HHHHHHHHHcCCCC-CCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHcc--CCCHHHH
Confidence 8999999 997654 6899999999986432 234567899999998 47899999999998776421 2234444
Q ss_pred HHHHh-------h-----h-hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC-CCEEEE
Q psy8953 75 KDQVS-------L-----E-LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ-GRTVVA 121 (286)
Q Consensus 75 ~~~v~-------l-----~-~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~-g~tii~ 121 (286)
++++. | . ..+.+||||+| ||++||+.++.+++++|++++++ |.|||+
T Consensus 131 ~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~ 210 (327)
T PRK11308 131 REKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVF 210 (327)
T ss_pred HHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 44433 2 2 45679999999 99999999999999999999885 999999
Q ss_pred EEcCCCHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 122 TIHTPSALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 122 ~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
++|+.. .+..++|++++|++|+++..|+.++++
T Consensus 211 iTHdl~-~~~~~adrv~vm~~G~ive~g~~~~~~ 243 (327)
T PRK11308 211 ISHDLS-VVEHIADEVMVMYLGRCVEKGTKEQIF 243 (327)
T ss_pred EeCCHH-HHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 999986 466789999999999999999988775
No 129
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=4.2e-22 Score=170.97 Aligned_cols=149 Identities=15% Similarity=0.166 Sum_probs=117.6
Q ss_pred Cchhhhh-cCCCCC----CceeEEEECCeecCchh--hhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHH
Q psy8953 1 MSIELNV-QSIRLT----GSSGKILVNGQERKSAC--IEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQE 73 (286)
Q Consensus 1 ~stll~~-~g~~~~----~~~G~i~~~g~~~~~~~--~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~ 73 (286)
||||+++ +|+.+. ..+|+|+++|+++.... ...+++.+|||+|++.+++ +||+|++.|..+.. ..+.++
T Consensus 51 KSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~---~~~~~~ 126 (258)
T PRK14268 51 KSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIH---GANKKD 126 (258)
T ss_pred HHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHc---CCCHHH
Confidence 8999999 997543 36999999999874311 1245678999999998887 89999999987642 223333
Q ss_pred HHHHHh-------h--------h-hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCE
Q psy8953 74 KKDQVS-------L--------E-LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRT 118 (286)
Q Consensus 74 ~~~~v~-------l--------~-~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~t 118 (286)
..+++. + . ....+||||+| ||++||+.++..++++|+++++ |.|
T Consensus 127 ~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~t 205 (258)
T PRK14268 127 LDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK-DYT 205 (258)
T ss_pred HHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-CCE
Confidence 333322 1 1 23468899999 9999999999999999999975 799
Q ss_pred EEEEEcCCCHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 119 VVATIHTPSALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 119 ii~~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
||+++|+++. +..++|++++|++|++++.|+++++.
T Consensus 206 iiivsH~~~~-~~~~~d~i~~l~~G~i~~~~~~~~~~ 241 (258)
T PRK14268 206 IVIVTHNMQQ-AARISDYTGFFLMGELIEFGQTRQIF 241 (258)
T ss_pred EEEEECCHHH-HHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999864 66889999999999999999887664
No 130
>PRK10908 cell division protein FtsE; Provisional
Probab=99.87 E-value=3.9e-22 Score=167.41 Aligned_cols=142 Identities=20% Similarity=0.227 Sum_probs=113.6
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchh---hhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSAC---IEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKD 76 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~---~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~ 76 (286)
||||+++ +|..+. .+|+|.++|+++...+ ...+++.++||+|++.+++..||.|++.|.+.+. ..+.++..+
T Consensus 41 KSTLl~~l~G~~~~-~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~ 116 (222)
T PRK10908 41 KSTLLKLICGIERP-SAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIA---GASGDDIRR 116 (222)
T ss_pred HHHHHHHHhCCCCC-CceEEEECCEEcccCChhHHHHHHhheEEEecCccccccccHHHHHHhHHHhc---CCCHHHHHH
Confidence 8999999 997653 6899999999875321 1235678999999999889999999999987642 223444333
Q ss_pred HHh-------h----h-hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcC
Q psy8953 77 QVS-------L----E-LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVATIHT 125 (286)
Q Consensus 77 ~v~-------l----~-~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~ 125 (286)
++. + . ....+||||+| ||++||+.++.+++++|++++++|.|||+++|+
T Consensus 117 ~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~ 196 (222)
T PRK10908 117 RVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHD 196 (222)
T ss_pred HHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 332 2 1 34578999999 999999999999999999998778999999999
Q ss_pred CCHHHHHHhhhHhhhcCCeeec
Q psy8953 126 PSALLFEKFDSLYALAKGHCIY 147 (286)
Q Consensus 126 ~~~~~~~~~d~v~~l~~G~i~~ 147 (286)
++. +..++|++++|++|+++.
T Consensus 197 ~~~-~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 197 IGL-ISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred HHH-HHHhCCEEEEEECCEEcc
Confidence 864 667899999999999863
No 131
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.87 E-value=4.2e-22 Score=166.79 Aligned_cols=139 Identities=23% Similarity=0.309 Sum_probs=110.0
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhh---c-ccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIE---Q-FLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKK 75 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~---~-~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~ 75 (286)
|||||++ +|..+. .+|+|.++|+++...+.. . .++.++||+|++.+++.+||+|++.|++..+. .+..+..
T Consensus 43 KSTLl~~i~Gl~~~-~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~ 118 (218)
T cd03255 43 KSTLLNILGGLDRP-TSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAG---VPKKERR 118 (218)
T ss_pred HHHHHHHHhCCcCC-CceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhcC---CCHHHHH
Confidence 8999999 997543 689999999987542211 1 24679999999999999999999999876431 2222222
Q ss_pred HHHh-------hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHh-CCCEEEEEE
Q psy8953 76 DQVS-------LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAK-QGRTVVATI 123 (286)
Q Consensus 76 ~~v~-------l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~-~g~tii~~~ 123 (286)
+++. +. ....+|||||| ||++||+.++..+.++|+++++ .|+|||+++
T Consensus 119 ~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~s 198 (218)
T cd03255 119 ERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVT 198 (218)
T ss_pred HHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEE
Confidence 2322 22 34568999999 9999999999999999999987 599999999
Q ss_pred cCCCHHHHHHhhhHhhhcCCee
Q psy8953 124 HTPSALLFEKFDSLYALAKGHC 145 (286)
Q Consensus 124 h~~~~~~~~~~d~v~~l~~G~i 145 (286)
|+++. +. ++|++++|++|++
T Consensus 199 H~~~~-~~-~~d~v~~l~~G~i 218 (218)
T cd03255 199 HDPEL-AE-YADRIIELRDGKI 218 (218)
T ss_pred CCHHH-Hh-hhcEEEEeeCCcC
Confidence 99864 54 8999999999974
No 132
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=5.7e-22 Score=166.22 Aligned_cols=141 Identities=22% Similarity=0.271 Sum_probs=113.5
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
||||+++ +|..+. .+|+|.++|+++.. .++.++||+|++.+++.+||+|++.|+...+ ..+.++..+++.
T Consensus 43 KSTLl~~l~Gl~~~-~~G~i~~~g~~~~~-----~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~ 113 (220)
T cd03293 43 KSTLLRIIAGLERP-TSGEVLVDGEPVTG-----PGPDRGYVFQQDALLPWLTVLDNVALGLELQ---GVPKAEARERAE 113 (220)
T ss_pred HHHHHHHHhCCCCC-CceEEEECCEECcc-----ccCcEEEEecccccccCCCHHHHHHHHHHHc---CCCHHHHHHHHH
Confidence 8999999 997543 68999999998753 3577999999999899999999999987632 122333222222
Q ss_pred -------hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHh-CCCEEEEEEcCCC
Q psy8953 80 -------LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAK-QGRTVVATIHTPS 127 (286)
Q Consensus 80 -------l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~-~g~tii~~~h~~~ 127 (286)
+. ....+|||||| ||++||+.++..++++|+++.+ .|.|||+++|+++
T Consensus 114 ~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~ 193 (220)
T cd03293 114 ELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDID 193 (220)
T ss_pred HHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH
Confidence 22 34568999999 9999999999999999999976 4899999999986
Q ss_pred HHHHHHhhhHhhhc--CCeeecccCh
Q psy8953 128 ALLFEKFDSLYALA--KGHCIYRGSI 151 (286)
Q Consensus 128 ~~~~~~~d~v~~l~--~G~i~~~g~~ 151 (286)
.+..++|++++|+ +|+++..++.
T Consensus 194 -~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 194 -EAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred -HHHHhCCEEEEEECCCCEEEEEEEe
Confidence 4668899999999 7999987653
No 133
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.87 E-value=3.4e-22 Score=165.80 Aligned_cols=138 Identities=22% Similarity=0.264 Sum_probs=110.2
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcc-cCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDA-LRPKLTVTEAMMIASHLKLGFKVSTQEKKDQV 78 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~-~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v 78 (286)
|||||++ +|..+. .+|+|.++|.++.. ..+++.+|||+|++. .+...||.|++.|+.... ....++..+.+
T Consensus 39 KSTLl~~l~Gl~~p-~~G~i~~~g~~~~~---~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~l 111 (205)
T cd03226 39 KTTLAKILAGLIKE-SSGSILLNGKPIKA---KERRKSIGYVMQDVDYQLFTDSVREELLLGLKEL---DAGNEQAETVL 111 (205)
T ss_pred HHHHHHHHhcCCCC-CceEEEECCEEhhh---HHhhcceEEEecChhhhhhhccHHHHHhhhhhhc---CccHHHHHHHH
Confidence 8999999 997543 78999999998754 345678999999985 456789999999976531 11223333333
Q ss_pred h---hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcCCCHHHH
Q psy8953 79 S---LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVATIHTPSALLF 131 (286)
Q Consensus 79 ~---l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~~~~~~~ 131 (286)
+ +. ....+|||||| ||++||+.++..+.++|++++++|.|||+++|+++. +.
T Consensus 112 ~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~-~~ 190 (205)
T cd03226 112 KDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEF-LA 190 (205)
T ss_pred HHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH-HH
Confidence 3 22 44668999999 999999999999999999998779999999999864 66
Q ss_pred HHhhhHhhhcCCeee
Q psy8953 132 EKFDSLYALAKGHCI 146 (286)
Q Consensus 132 ~~~d~v~~l~~G~i~ 146 (286)
.++|++++|++|+++
T Consensus 191 ~~~d~i~~l~~G~iv 205 (205)
T cd03226 191 KVCDRVLLLANGAIV 205 (205)
T ss_pred HhCCEEEEEECCEEC
Confidence 789999999999875
No 134
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=5.3e-22 Score=168.79 Aligned_cols=149 Identities=21% Similarity=0.276 Sum_probs=116.7
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCc------hhhhcccceeeEEecCcccCCCCCHHHHHHHH-HhcCCCCCCCHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKS------ACIEQFLKLSCYIQQDDALRPKLTVTEAMMIA-SHLKLGFKVSTQ 72 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~------~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~-~~~~~~~~~~~~ 72 (286)
||||+++ +|..+. .+|+|+++|+++.. .....+++.++||+|++.+++.+||.|++.+. .+.. ....+
T Consensus 41 KSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~---~~~~~ 116 (242)
T PRK11124 41 KSSLLRVLNLLEMP-RSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVL---GLSKD 116 (242)
T ss_pred HHHHHHHHhCCCCC-CceEEEECCEecccccccchhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHc---CCCHH
Confidence 8999999 997543 78999999998631 11234567899999999999999999999753 3321 12233
Q ss_pred HHHHHHh-------hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEE
Q psy8953 73 EKKDQVS-------LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVA 121 (286)
Q Consensus 73 ~~~~~v~-------l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~ 121 (286)
+..+++. +. ....+|||||| ||++||+.++..++++|++++++|.|+|+
T Consensus 117 ~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~ 196 (242)
T PRK11124 117 QALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVI 196 (242)
T ss_pred HHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEE
Confidence 3333322 22 34568999999 99999999999999999999877999999
Q ss_pred EEcCCCHHHHHHhhhHhhhcCCeeecccChhcH
Q psy8953 122 TIHTPSALLFEKFDSLYALAKGHCIYRGSISRL 154 (286)
Q Consensus 122 ~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 154 (286)
++|+++ .+..++|++++|++|++++.|+++++
T Consensus 197 ~sh~~~-~~~~~~d~i~~l~~g~i~~~~~~~~~ 228 (242)
T PRK11124 197 VTHEVE-VARKTASRVVYMENGHIVEQGDASCF 228 (242)
T ss_pred EeCCHH-HHHHhcCEEEEEECCEEEEeCCHHHh
Confidence 999986 45678999999999999999887653
No 135
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=5e-22 Score=170.26 Aligned_cols=153 Identities=21% Similarity=0.265 Sum_probs=118.0
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcc-cceeeEEecCcccCCCCCHHHHHHHHHhcCCC-------C----
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQF-LKLSCYIQQDDALRPKLTVTEAMMIASHLKLG-------F---- 67 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~-~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~-------~---- 67 (286)
||||+++ +|..+. .+|+|.++|+++...+.... +..++||+|++.+++.+||.|++.++...+.. .
T Consensus 44 KSTLl~~l~Gl~~~-~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~ 122 (255)
T PRK11300 44 KTTVFNCLTGFYKP-TGGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPA 122 (255)
T ss_pred HHHHHHHHhCCcCC-CcceEEECCEECCCCCHHHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccc
Confidence 8999999 997543 78999999998764322222 34689999999999999999999997542110 0
Q ss_pred -CCCHHHHHHHHh-------hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC
Q psy8953 68 -KVSTQEKKDQVS-------LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ 115 (286)
Q Consensus 68 -~~~~~~~~~~v~-------l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~ 115 (286)
.....+..+++. +. ....+||||+| ||++||+.++..+.++|++++++
T Consensus 123 ~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~ 202 (255)
T PRK11300 123 FRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNE 202 (255)
T ss_pred cccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhh
Confidence 001111112222 22 44568999999 99999999999999999999886
Q ss_pred -CCEEEEEEcCCCHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 116 -GRTVVATIHTPSALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 116 -g~tii~~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
|.|||+++|+++ .+..++|++++|++|++++.|+++++.
T Consensus 203 ~~~tii~~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~~~ 242 (255)
T PRK11300 203 HNVTVLLIEHDMK-LVMGISDRIYVVNQGTPLANGTPEEIR 242 (255)
T ss_pred cCCEEEEEeCCHH-HHHHhCCEEEEEECCeEEecCCHHHHh
Confidence 999999999986 466889999999999999999987654
No 136
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.87 E-value=4.4e-22 Score=166.18 Aligned_cols=140 Identities=26% Similarity=0.303 Sum_probs=111.6
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchh---hhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSAC---IEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKD 76 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~---~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~ 76 (286)
|||||++ +|..+. .+|+|.++|+++.... ...+++.++||+|++.+++.+||+|++.|..+.+. .+.++..+
T Consensus 40 KSTLl~~l~G~~~~-~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~---~~~~~~~~ 115 (214)
T cd03292 40 KSTLLKLIYKEELP-TSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTG---VPPREIRK 115 (214)
T ss_pred HHHHHHHHhcCCCC-CceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccCCcHHHHHHHHHHHcC---CCHHHHHH
Confidence 8999999 997543 6899999999875321 12356789999999999999999999999876421 23333333
Q ss_pred HHh-------hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcC
Q psy8953 77 QVS-------LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVATIHT 125 (286)
Q Consensus 77 ~v~-------l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~ 125 (286)
++. +. ....+||||+| ||++||+.++..+.+.|++++++|.|||+++|+
T Consensus 116 ~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~ 195 (214)
T cd03292 116 RVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHA 195 (214)
T ss_pred HHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 322 22 34568999999 999999999999999999998779999999999
Q ss_pred CCHHHHHHhhhHhhhcCCee
Q psy8953 126 PSALLFEKFDSLYALAKGHC 145 (286)
Q Consensus 126 ~~~~~~~~~d~v~~l~~G~i 145 (286)
++ .+..++|++++|++|++
T Consensus 196 ~~-~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 196 KE-LVDTTRHRVIALERGKL 214 (214)
T ss_pred HH-HHHHhCCEEEEEeCCcC
Confidence 86 46678999999999874
No 137
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=6.5e-22 Score=167.47 Aligned_cols=148 Identities=21% Similarity=0.258 Sum_probs=118.6
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHH--
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQ-- 77 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~-- 77 (286)
||||+++ +|..+. .+|+|.++|.++.... ..++.++||+|++.+++.+||.|++.|+.... .....+..++
T Consensus 38 KStLl~~l~G~~~p-~~G~v~i~g~~~~~~~--~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~---~~~~~~~~~~~~ 111 (235)
T cd03299 38 KSVLLETIAGFIKP-DSGKILLNGKDITNLP--PEKRDISYVPQNYALFPHMTVYKNIAYGLKKR---KVDKKEIERKVL 111 (235)
T ss_pred HHHHHHHHhCCcCC-CceEEEECCEEcCcCC--hhHcCEEEEeecCccCCCccHHHHHHHHHHHc---CCCHHHHHHHHH
Confidence 8999999 996543 6899999999886421 23578999999999999999999999986532 1223333222
Q ss_pred --Hh---hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC-CCEEEEEEcCCC
Q psy8953 78 --VS---LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ-GRTVVATIHTPS 127 (286)
Q Consensus 78 --v~---l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~-g~tii~~~h~~~ 127 (286)
++ +. ....+||||+| ||++||+.++..++++|++++.+ |.|||+++|+++
T Consensus 112 ~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~ 191 (235)
T cd03299 112 EIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFE 191 (235)
T ss_pred HHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 22 22 34568999999 99999999999999999999875 999999999986
Q ss_pred HHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 128 ALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 128 ~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
. +.+++|++++|++|++++.|++++..
T Consensus 192 ~-~~~~~d~i~~l~~G~i~~~~~~~~~~ 218 (235)
T cd03299 192 E-AWALADKVAIMLNGKLIQVGKPEEVF 218 (235)
T ss_pred H-HHHhCCEEEEEECCEEEEecCHHHHH
Confidence 4 66889999999999999999876654
No 138
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=3.5e-22 Score=168.84 Aligned_cols=151 Identities=17% Similarity=0.232 Sum_probs=117.4
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCC-CCHHHHHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFK-VSTQEKKDQV 78 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~-~~~~~~~~~v 78 (286)
|||||++ +|..+. .+|+|.++|+++... ....+.++||+|++.+++.+||.|++.|......... ...+++.+.+
T Consensus 38 KSTLl~~l~Gl~~~-~~G~i~~~g~~~~~~--~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l 114 (232)
T PRK10771 38 KSTLLNLIAGFLTP-ASGSLTLNGQDHTTT--PPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIA 114 (232)
T ss_pred HHHHHHHHhCCCCC-CCceEEECCeecCcC--ChhhccEEEEecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHH
Confidence 8999999 997543 789999999987542 1224679999999999999999999998753211100 0111222222
Q ss_pred h---hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC-CCEEEEEEcCCCHHH
Q psy8953 79 S---LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ-GRTVVATIHTPSALL 130 (286)
Q Consensus 79 ~---l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~-g~tii~~~h~~~~~~ 130 (286)
+ +. ....+||||+| ||++||+.++..+.++|++++++ |.|||+++|+++ .+
T Consensus 115 ~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~ 193 (232)
T PRK10771 115 RQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLE-DA 193 (232)
T ss_pred HHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HH
Confidence 2 22 44578999999 99999999999999999999774 999999999986 46
Q ss_pred HHHhhhHhhhcCCeeecccChhcHH
Q psy8953 131 FEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 131 ~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
..++|++++|++|++++.|+++++.
T Consensus 194 ~~~~d~i~~l~~g~i~~~g~~~~~~ 218 (232)
T PRK10771 194 ARIAPRSLVVADGRIAWDGPTDELL 218 (232)
T ss_pred HHhCCEEEEEECCEEEEeCCHHHHH
Confidence 6889999999999999999877665
No 139
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.87 E-value=2.5e-22 Score=170.96 Aligned_cols=152 Identities=22% Similarity=0.258 Sum_probs=117.1
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchh---hhcccceeeEEecCcccCCCCCHHHHHHHHHhcCC-----CCCCCH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSAC---IEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKL-----GFKVST 71 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~---~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~-----~~~~~~ 71 (286)
|||||++ +|..+. .+|+|.+||+++...+ ...+++.+|||+|++.+++.+||+|++.|+..... ......
T Consensus 41 KSTLl~~l~Gl~~~-~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~ 119 (243)
T TIGR02315 41 KSTLLRCINRLVEP-SSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFS 119 (243)
T ss_pred HHHHHHHHhCCcCC-CccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhcccc
Confidence 8999999 997644 6899999999875421 12346789999999999999999999988643100 001111
Q ss_pred HHHHHHHh-------hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC-CCEE
Q psy8953 72 QEKKDQVS-------LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ-GRTV 119 (286)
Q Consensus 72 ~~~~~~v~-------l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~-g~ti 119 (286)
++..+++. +. ....+||||+| ||++||+.++..+.++|++++++ |+||
T Consensus 120 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~ti 199 (243)
T TIGR02315 120 EEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITV 199 (243)
T ss_pred HHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEE
Confidence 12222222 22 34568999999 99999999999999999999764 8999
Q ss_pred EEEEcCCCHHHHHHhhhHhhhcCCeeecccChhcH
Q psy8953 120 VATIHTPSALLFEKFDSLYALAKGHCIYRGSISRL 154 (286)
Q Consensus 120 i~~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 154 (286)
|+++|+++. +..++|++++|++|++++.|+++++
T Consensus 200 ii~tH~~~~-~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (243)
T TIGR02315 200 IINLHQVDL-AKKYADRIVGLKAGEIVFDGAPSEL 233 (243)
T ss_pred EEEeCCHHH-HHHhcCeEEEEECCEEEecCCHHHh
Confidence 999999864 6688999999999999999988764
No 140
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.87 E-value=7.3e-22 Score=168.43 Aligned_cols=150 Identities=16% Similarity=0.174 Sum_probs=117.8
Q ss_pred Cchhhhh-cCCCCCC----ceeEEEECCeecCch--hhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHH
Q psy8953 1 MSIELNV-QSIRLTG----SSGKILVNGQERKSA--CIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQE 73 (286)
Q Consensus 1 ~stll~~-~g~~~~~----~~G~i~~~g~~~~~~--~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~ 73 (286)
|||||++ +|..+.. .+|+|+++|+++... ....+++.+|||+|++.+++ .||.|++.|.++++. ..+.++
T Consensus 40 KSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~ 116 (247)
T TIGR00972 40 KSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHG--IKDKKE 116 (247)
T ss_pred HHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcccCC-CCHHHHHHhHHHhcC--CCCHHH
Confidence 8999999 9975431 389999999987531 12345678999999998888 999999999876421 012333
Q ss_pred HHHHHh-------h-----h----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCE
Q psy8953 74 KKDQVS-------L-----E----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRT 118 (286)
Q Consensus 74 ~~~~v~-------l-----~----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~t 118 (286)
..+++. + . ....+|||||| ||++||+.++..++++|++++++ .|
T Consensus 117 ~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~t 195 (247)
T TIGR00972 117 LDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKK-YT 195 (247)
T ss_pred HHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhc-Ce
Confidence 333322 2 1 23568899999 99999999999999999999874 89
Q ss_pred EEEEEcCCCHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 119 VVATIHTPSALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 119 ii~~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
||+++|+++ .+..++|++++|++|++++.|+++++.
T Consensus 196 iiivsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 231 (247)
T TIGR00972 196 IVIVTHNMQ-QAARISDRTAFFYDGELVEYGPTEQIF 231 (247)
T ss_pred EEEEecCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999986 466889999999999999999887654
No 141
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=3.5e-22 Score=166.42 Aligned_cols=145 Identities=20% Similarity=0.246 Sum_probs=112.3
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCC-CCHHHHHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFK-VSTQEKKDQV 78 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~-~~~~~~~~~v 78 (286)
|||||++ +|..+. .+|+|.++|+++... ...++.+|||+|++.+++.+||+|+++|+...+.... ...+++.+.+
T Consensus 37 KSTLl~~l~gl~~~-~~G~i~~~g~~~~~~--~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l 113 (211)
T cd03298 37 KSTLLNLIAGFETP-QSGRVLINGVDVTAA--PPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVAL 113 (211)
T ss_pred HHHHHHHHhCCCCC-CCceEEECCEEcCcC--CHhHccEEEEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHH
Confidence 8999999 997653 689999999987542 1234689999999999999999999998765321100 0111222222
Q ss_pred h---hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC-CCEEEEEEcCCCHHH
Q psy8953 79 S---LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ-GRTVVATIHTPSALL 130 (286)
Q Consensus 79 ~---l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~-g~tii~~~h~~~~~~ 130 (286)
+ +. ....+||||+| ||++||+.++..++++|++++.+ |.|||+++|+++. +
T Consensus 114 ~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~-~ 192 (211)
T cd03298 114 ARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPED-A 192 (211)
T ss_pred HHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-H
Confidence 2 22 34568999999 99999999999999999999864 9999999999864 6
Q ss_pred HHHhhhHhhhcCCeeeccc
Q psy8953 131 FEKFDSLYALAKGHCIYRG 149 (286)
Q Consensus 131 ~~~~d~v~~l~~G~i~~~g 149 (286)
..++|++++|++|+++..|
T Consensus 193 ~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 193 KRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HhhhCEEEEEECCEEeecC
Confidence 6889999999999998653
No 142
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.86 E-value=6.8e-22 Score=168.21 Aligned_cols=153 Identities=17% Similarity=0.098 Sum_probs=117.2
Q ss_pred Cchhhhh-cCCCC-CCceeEEEECCeecCchhhhcc-cceeeEEecCcccCCCCCHHHHHHHHHhcCCCC----CCCHHH
Q psy8953 1 MSIELNV-QSIRL-TGSSGKILVNGQERKSACIEQF-LKLSCYIQQDDALRPKLTVTEAMMIASHLKLGF----KVSTQE 73 (286)
Q Consensus 1 ~stll~~-~g~~~-~~~~G~i~~~g~~~~~~~~~~~-~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~----~~~~~~ 73 (286)
|||||++ +|+.+ ...+|+|.++|+++...+.... +..++||+|++.+++.+||+|++.|.++..... ..+.++
T Consensus 39 KSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (243)
T TIGR01978 39 KSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLD 118 (243)
T ss_pred HHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHH
Confidence 8999999 99742 3579999999998754322232 345899999999999999999999976532110 012233
Q ss_pred HHHHHh-------hh------hhh-cccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEE
Q psy8953 74 KKDQVS-------LE------LWN-NFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVV 120 (286)
Q Consensus 74 ~~~~v~-------l~------~~~-~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii 120 (286)
..+++. +. ... .+|||||| ||++||+.++..+.++|++++++|.|||
T Consensus 119 ~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi 198 (243)
T TIGR01978 119 FLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFL 198 (243)
T ss_pred HHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEE
Confidence 223322 21 223 49999999 9999999999999999999987899999
Q ss_pred EEEcCCCHHHHHH-hhhHhhhcCCeeecccChhcH
Q psy8953 121 ATIHTPSALLFEK-FDSLYALAKGHCIYRGSISRL 154 (286)
Q Consensus 121 ~~~h~~~~~~~~~-~d~v~~l~~G~i~~~g~~~~~ 154 (286)
+++|+++. +..+ +|++++|++|++++.|+++++
T Consensus 199 ~vsH~~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (243)
T TIGR01978 199 IITHYQRL-LNYIKPDYVHVLLDGRIVKSGDVELA 232 (243)
T ss_pred EEEecHHH-HHhhcCCeEEEEeCCEEEEecCHHHh
Confidence 99999864 5566 799999999999999987643
No 143
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.86 E-value=4.6e-22 Score=170.52 Aligned_cols=152 Identities=17% Similarity=0.220 Sum_probs=118.6
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHh-c-CCCCCCCHHH----
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASH-L-KLGFKVSTQE---- 73 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~-~-~~~~~~~~~~---- 73 (286)
||||+++ +|..+. .+|+|.++|+++...+...+++.++||+|++.+++.+||+|++.|+.. . .. ...+.++
T Consensus 40 KSTLl~~i~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~-~~~~~~~~~~~ 117 (256)
T TIGR03873 40 KSTLLRLLAGALRP-DAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSL-WAGDSPHDAAV 117 (256)
T ss_pred HHHHHHHHcCCCCC-CCCEEEECCEEcccCCHHHHhhheEEecccCccCCCCCHHHHHHhcchhhhhh-ccCCCHHHHHH
Confidence 8999999 996543 689999999987654334556679999999988888999999998632 1 11 0111111
Q ss_pred HHHHHh---hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcCC
Q psy8953 74 KKDQVS---LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVATIHTP 126 (286)
Q Consensus 74 ~~~~v~---l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~~ 126 (286)
..+.++ +. ....+||||+| ||++||+.++..++++|++++++|.|||+++|++
T Consensus 118 ~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~ 197 (256)
T TIGR03873 118 VDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDL 197 (256)
T ss_pred HHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 222222 22 34568999999 9999999999999999999987799999999999
Q ss_pred CHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 127 SALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 127 ~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
+. +..++|++++|++|+++..|+.+++.
T Consensus 198 ~~-~~~~~d~i~~l~~G~i~~~g~~~~~~ 225 (256)
T TIGR03873 198 NL-AASYCDHVVVLDGGRVVAAGPPREVL 225 (256)
T ss_pred HH-HHHhCCEEEEEeCCCEEEecCHHHhh
Confidence 74 66889999999999999999887654
No 144
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.86 E-value=2.5e-22 Score=160.96 Aligned_cols=148 Identities=20% Similarity=0.244 Sum_probs=120.4
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcc--cCCCCCHHHHHHHHHhcCCCCCCCHHH----
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDA--LRPKLTVTEAMMIASHLKLGFKVSTQE---- 73 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~--~~~~~tV~e~l~f~~~~~~~~~~~~~~---- 73 (286)
||||+|+ ||+... .+|.|+|+|.++++.+..+.+..++-|||||. .++.+|++|+++.+..-+-.++.+..-
T Consensus 45 KSTlln~iaG~l~~-t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~ 123 (263)
T COG1101 45 KSTLLNAIAGDLKP-TSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERR 123 (263)
T ss_pred HHHHHHHhhCcccc-CCceEEECceecccCCHHHHhhHHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHH
Confidence 8999999 997554 79999999999998877777889999999995 799999999999988543333333321
Q ss_pred ---HHHHHh-----hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC-CCEEE
Q psy8953 74 ---KKDQVS-----LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ-GRTVV 120 (286)
Q Consensus 74 ---~~~~v~-----l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~-g~tii 120 (286)
-++++. |+ ...-+|||||| =|+.|||.++..+++.-+++.++ ..|.+
T Consensus 124 ~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtl 203 (263)
T COG1101 124 RSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTL 203 (263)
T ss_pred HHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceE
Confidence 122333 22 33457899999 67899999999999999999876 88999
Q ss_pred EEEcCCCHHHHHHhhhHhhhcCCeeecccC
Q psy8953 121 ATIHTPSALLFEKFDSLYALAKGHCIYRGS 150 (286)
Q Consensus 121 ~~~h~~~~~~~~~~d~v~~l~~G~i~~~g~ 150 (286)
+++|..++.+ ++-+|+++|++|+|+.+-.
T Consensus 204 MVTHnm~~Al-~yG~RlImLh~G~IvlDv~ 232 (263)
T COG1101 204 MVTHNMEDAL-DYGNRLIMLHSGKIVLDVT 232 (263)
T ss_pred EEeccHHHHH-hhCCeEEEEeCCeEEEEcc
Confidence 9999998654 8899999999999998644
No 145
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.86 E-value=7.8e-22 Score=162.09 Aligned_cols=126 Identities=44% Similarity=0.684 Sum_probs=107.8
Q ss_pred Cchhhhh-cCCCC-CCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHH
Q psy8953 1 MSIELNV-QSIRL-TGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQV 78 (286)
Q Consensus 1 ~stll~~-~g~~~-~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v 78 (286)
||||+++ +|..+ ...+|+|.++|+++.. ..+++.++||+|++.+++.+||.|++.|...+.
T Consensus 48 KStLl~~i~Gl~~~~~~~G~i~~~g~~~~~---~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~-------------- 110 (194)
T cd03213 48 KSTLLNALAGRRTGLGVSGEVLINGRPLDK---RSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR-------------- 110 (194)
T ss_pred HHHHHHHHhCCCCCCCCceEEEECCEeCch---HhhhheEEEccCcccCCCCCcHHHHHHHHHHhc--------------
Confidence 8999999 99762 3479999999998864 355678999999999999999999999876531
Q ss_pred hhhhhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHhhhHhh
Q psy8953 79 SLELWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVATIHTPSALLFEKFDSLYA 139 (286)
Q Consensus 79 ~l~~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~~~~~~~~~~d~v~~ 139 (286)
.+||||+| ||++||+.++..+.++|++++++|+|+|+++|+++..+..++|++++
T Consensus 111 ------~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~ 184 (194)
T cd03213 111 ------GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLL 184 (194)
T ss_pred ------cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEE
Confidence 34566655 99999999999999999999877999999999997557788999999
Q ss_pred hcCCeeeccc
Q psy8953 140 LAKGHCIYRG 149 (286)
Q Consensus 140 l~~G~i~~~g 149 (286)
|++|++++.|
T Consensus 185 l~~G~i~~~~ 194 (194)
T cd03213 185 LSQGRVIYFG 194 (194)
T ss_pred EeCCEEEecC
Confidence 9999998754
No 146
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.86 E-value=5.3e-22 Score=157.55 Aligned_cols=150 Identities=21% Similarity=0.302 Sum_probs=127.2
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
|||+|.+ +++-.. .+|+|.|||.+.... ....++.+|.++-.-.++..+|++|+|.|.+++ -.+++.++++|++
T Consensus 41 KTT~LRmiatlL~P-~~G~v~idg~d~~~~-p~~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L---~~l~~~~~kari~ 115 (245)
T COG4555 41 KTTLLRMIATLLIP-DSGKVTIDGVDTVRD-PSFVRRKIGVLFGERGLYARLTARENLKYFARL---NGLSRKEIKARIA 115 (245)
T ss_pred chhHHHHHHHhccC-CCceEEEeecccccC-hHHHhhhcceecCCcChhhhhhHHHHHHHHHHH---hhhhhhHHHHHHH
Confidence 8999999 885443 799999999998653 245579999999444589999999999999995 3456788887776
Q ss_pred -------hh-hhhc----ccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcCCCH
Q psy8953 80 -------LE-LWNN----FCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVATIHTPSA 128 (286)
Q Consensus 80 -------l~-~~~~----~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~~~~ 128 (286)
+. +.|. +|-|+|| ||||||..++..+.+.+++++++|++||.+.|..+
T Consensus 116 ~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~- 194 (245)
T COG4555 116 ELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQ- 194 (245)
T ss_pred HHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHH-
Confidence 33 5555 5679999 99999999999999999999999999999999997
Q ss_pred HHHHHhhhHhhhcCCeeecccChhcHHH
Q psy8953 129 LLFEKFDSLYALAKGHCIYRGSISRLVP 156 (286)
Q Consensus 129 ~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 156 (286)
++..+||||+++++|++++.|+++++..
T Consensus 195 EvealCDrvivlh~Gevv~~gs~~~l~~ 222 (245)
T COG4555 195 EVEALCDRVIVLHKGEVVLEGSIEALDA 222 (245)
T ss_pred HHHHhhheEEEEecCcEEEcCCHHHHHH
Confidence 4768999999999999999999987654
No 147
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=4e-22 Score=170.82 Aligned_cols=153 Identities=19% Similarity=0.259 Sum_probs=118.3
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHh--cCCCCCCCH---HHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASH--LKLGFKVST---QEK 74 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~--~~~~~~~~~---~~~ 74 (286)
||||+++ +|..+. .+|+|.++|+++...+...+++.++||+|++.+++.+||.|++.|+.. ...-...+. +++
T Consensus 41 KSTLl~~l~Gl~~~-~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~ 119 (255)
T PRK11231 41 KSTLLKCFARLLTP-QSGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARV 119 (255)
T ss_pred HHHHHHHHhCCcCC-CCcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHH
Confidence 8999999 997543 789999999987543334456789999999988889999999998642 111000011 112
Q ss_pred HHHHh---h----h-hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcCCC
Q psy8953 75 KDQVS---L----E-LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVATIHTPS 127 (286)
Q Consensus 75 ~~~v~---l----~-~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~~~ 127 (286)
.+.++ + . ....+||||+| ||++||+.++..+.+.|++++.+|.|||+++|+++
T Consensus 120 ~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~ 199 (255)
T PRK11231 120 NQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLN 199 (255)
T ss_pred HHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH
Confidence 22222 2 1 44668999999 99999999999999999999877999999999986
Q ss_pred HHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 128 ALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 128 ~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
.+.+++|++++|++|+++..|++++..
T Consensus 200 -~~~~~~d~i~~l~~G~i~~~~~~~~~~ 226 (255)
T PRK11231 200 -QASRYCDHLVVLANGHVMAQGTPEEVM 226 (255)
T ss_pred -HHHHhcCEEEEEECCeEEEEcCHHHhc
Confidence 466889999999999999999877654
No 148
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.86 E-value=1.1e-21 Score=164.73 Aligned_cols=143 Identities=22% Similarity=0.280 Sum_probs=116.4
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
|||||++ +|..+ ..+|+|.++|+++.. .. .+.++|++|++.+++.+||+|++.+...... .+.++..+.++
T Consensus 39 KSTLl~~l~G~~~-~~~G~i~~~~~~~~~---~~-~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~~---~~~~~~~~~l~ 110 (223)
T TIGR03740 39 KSTLLKMITGILR-PTSGEIIFDGHPWTR---KD-LHKIGSLIESPPLYENLTARENLKVHTTLLG---LPDSRIDEVLN 110 (223)
T ss_pred HHHHHHHHhCCCC-CCceEEEECCEeccc---cc-cccEEEEcCCCCccccCCHHHHHHHHHHHcC---CCHHHHHHHHH
Confidence 8999999 99754 379999999998753 22 2579999999998999999999998876421 23333333333
Q ss_pred ---hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHH
Q psy8953 80 ---LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVATIHTPSALLFE 132 (286)
Q Consensus 80 ---l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~~~~~~~~ 132 (286)
+. ....+||||+| ||++||+.++..++++|++++++|.|||+++|+++ .+..
T Consensus 111 ~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~-~~~~ 189 (223)
T TIGR03740 111 IVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILS-EVQQ 189 (223)
T ss_pred HcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHH
Confidence 22 44568999999 99999999999999999999877999999999986 4668
Q ss_pred HhhhHhhhcCCeeecccChh
Q psy8953 133 KFDSLYALAKGHCIYRGSIS 152 (286)
Q Consensus 133 ~~d~v~~l~~G~i~~~g~~~ 152 (286)
++|++++|++|++++.|++.
T Consensus 190 ~~d~i~~l~~g~i~~~~~~~ 209 (223)
T TIGR03740 190 LADHIGIISEGVLGYQGKIN 209 (223)
T ss_pred hcCEEEEEeCCEEEEecChh
Confidence 89999999999999988765
No 149
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.86 E-value=7.7e-22 Score=164.72 Aligned_cols=139 Identities=21% Similarity=0.271 Sum_probs=110.4
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchh---hhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSAC---IEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKD 76 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~---~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~ 76 (286)
||||+++ +|..+. .+|+|.++|+++.... ...+++.++||+|++.+++.+||.|++.|++... ....++..+
T Consensus 41 KSTLl~~i~Gl~~~-~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~ 116 (214)
T TIGR02673 41 KTTLLKLLYGALTP-SRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVR---GKKEREIQR 116 (214)
T ss_pred HHHHHHHHhCCCCC-CCceEEECCEEcccCCHHHHHHHHhheEEEecChhhccCCcHHHHHHHHHHHc---CCCHHHHHH
Confidence 8999999 997543 6999999999875421 1235678999999999999999999999987632 122222222
Q ss_pred HHh-------hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcC
Q psy8953 77 QVS-------LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVATIHT 125 (286)
Q Consensus 77 ~v~-------l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~ 125 (286)
++. +. ....+||||+| ||++||+.++..+.+.|++++++|.|||+++|+
T Consensus 117 ~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~ 196 (214)
T TIGR02673 117 RVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHD 196 (214)
T ss_pred HHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 222 22 34578999999 999999999999999999998779999999999
Q ss_pred CCHHHHHHhhhHhhhcCCe
Q psy8953 126 PSALLFEKFDSLYALAKGH 144 (286)
Q Consensus 126 ~~~~~~~~~d~v~~l~~G~ 144 (286)
++ .+..++|++++|++|+
T Consensus 197 ~~-~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 197 LS-LVDRVAHRVIILDDGR 214 (214)
T ss_pred HH-HHHHhcCEEEEecCCC
Confidence 86 4667899999999885
No 150
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=8e-22 Score=174.64 Aligned_cols=154 Identities=13% Similarity=0.085 Sum_probs=118.4
Q ss_pred Cchhhhh-cCCCCC---CceeEEEECCeecCchhhhcc----cceeeEEecCcc--cCCCCCHHHHHHHHHhcCCCCC--
Q psy8953 1 MSIELNV-QSIRLT---GSSGKILVNGQERKSACIEQF----LKLSCYIQQDDA--LRPKLTVTEAMMIASHLKLGFK-- 68 (286)
Q Consensus 1 ~stll~~-~g~~~~---~~~G~i~~~g~~~~~~~~~~~----~~~~g~v~Q~~~--~~~~~tV~e~l~f~~~~~~~~~-- 68 (286)
||||+++ +|+.+. ..+|+|+++|+++...+.+.+ ++.++||||++. +.+.+||.+++.+.........
T Consensus 46 KSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~ 125 (330)
T PRK15093 46 KSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRW 125 (330)
T ss_pred HHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccc
Confidence 8999999 997642 368999999999864332322 357999999985 5799999999987543110000
Q ss_pred -CCHHHHHHHHh-------h-------h-hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHH
Q psy8953 69 -VSTQEKKDQVS-------L-------E-LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLA 113 (286)
Q Consensus 69 -~~~~~~~~~v~-------l-------~-~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~ 113 (286)
...++.++++. | . ..+.+||||+| ||++||+.++.+++++|++++
T Consensus 126 ~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~ 205 (330)
T PRK15093 126 WQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLN 205 (330)
T ss_pred cccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHH
Confidence 01122222222 2 1 34579999999 999999999999999999998
Q ss_pred hC-CCEEEEEEcCCCHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 114 KQ-GRTVVATIHTPSALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 114 ~~-g~tii~~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
++ |.|||+++|+++ .+..++||+++|++|+|+..|+.++++
T Consensus 206 ~~~g~tii~itHdl~-~v~~~~dri~vm~~G~ive~g~~~~i~ 247 (330)
T PRK15093 206 QNNNTTILLISHDLQ-MLSQWADKINVLYCGQTVETAPSKELV 247 (330)
T ss_pred HhcCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 85 999999999986 466889999999999999999988765
No 151
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.86 E-value=8e-22 Score=164.63 Aligned_cols=150 Identities=21% Similarity=0.323 Sum_probs=117.2
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcc--cCCCCCHHHHHHHHHhcCCC--CCCCHHH--
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDA--LRPKLTVTEAMMIASHLKLG--FKVSTQE-- 73 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~--~~~~~tV~e~l~f~~~~~~~--~~~~~~~-- 73 (286)
||||+.+ .|+... .+|+|.++|+++.. ..-...+|||||... .-.-+||+|-++-+.--+.+ ...+.++
T Consensus 43 KSTLlK~iLGll~p-~~G~i~~~g~~~~~---~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~ 118 (254)
T COG1121 43 KSTLLKAILGLLKP-SSGEIKIFGKPVRK---RRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKE 118 (254)
T ss_pred HHHHHHHHhCCCcC-CcceEEEccccccc---cccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHH
Confidence 8999999 995433 79999999998765 233578999999763 34778999999998532221 2222222
Q ss_pred -HH---HHHhhh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcC
Q psy8953 74 -KK---DQVSLE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVATIHT 125 (286)
Q Consensus 74 -~~---~~v~l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~ 125 (286)
++ ++|.+. ....+||||+| |++|+|+.++.+++++|++|+++|+||++++|+
T Consensus 119 ~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHD 198 (254)
T COG1121 119 KVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHD 198 (254)
T ss_pred HHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 22 233322 44568999999 999999999999999999999999999999999
Q ss_pred CCHHHHHHhhhHhhhcCCeeecccChhcHHH
Q psy8953 126 PSALLFEKFDSLYALAKGHCIYRGSISRLVP 156 (286)
Q Consensus 126 ~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 156 (286)
+. .+.+.||+|+.|++ ++++.|+++++..
T Consensus 199 L~-~v~~~~D~vi~Ln~-~~~~~G~~~~~~~ 227 (254)
T COG1121 199 LG-LVMAYFDRVICLNR-HLIASGPPEEVLT 227 (254)
T ss_pred cH-HhHhhCCEEEEEcC-eeEeccChhhccC
Confidence 97 47799999999886 6788899988763
No 152
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=4.3e-22 Score=171.53 Aligned_cols=153 Identities=24% Similarity=0.313 Sum_probs=118.4
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCC-CC-CCH---HHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLG-FK-VST---QEK 74 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~-~~-~~~---~~~ 74 (286)
||||+++ +|..+. .+|+|+++|+++...+...+++.++||+|++.+++.+||.|++.|+...... .. ... +++
T Consensus 50 KSTLl~~l~Gl~~~-~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~ 128 (265)
T PRK10575 50 KSTLLKMLGRHQPP-SEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKV 128 (265)
T ss_pred HHHHHHHHcCCCCC-CCCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHH
Confidence 8999999 997543 7899999999875433345567899999999888999999999986421100 00 111 112
Q ss_pred H---HHHhhh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC-CCEEEEEEcCC
Q psy8953 75 K---DQVSLE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ-GRTVVATIHTP 126 (286)
Q Consensus 75 ~---~~v~l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~-g~tii~~~h~~ 126 (286)
. +++.+. ....+||||+| ||++||+.++..+.++|++++.+ |.|||+++|++
T Consensus 129 ~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~ 208 (265)
T PRK10575 129 EEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDI 208 (265)
T ss_pred HHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 2 222222 34568999999 99999999999999999999875 99999999998
Q ss_pred CHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 127 SALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 127 ~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
+ .+...+|++++|++|+++..|+++++.
T Consensus 209 ~-~i~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (265)
T PRK10575 209 N-MAARYCDYLVALRGGEMIAQGTPAELM 236 (265)
T ss_pred H-HHHHhCCEEEEEECCeEEEecCHHHhc
Confidence 6 466889999999999999999877654
No 153
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.86 E-value=8.4e-22 Score=166.31 Aligned_cols=149 Identities=15% Similarity=0.217 Sum_probs=118.3
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhc-ccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHH----
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQ-FLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEK---- 74 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~-~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~---- 74 (286)
||||+++ +|..+. .+|+|.++|.++...+... .++.+|||+|++.+++.+||.|++.|+.+..- ...++.
T Consensus 39 KSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~ 114 (230)
T TIGR03410 39 KTTLLKTLMGLLPV-KSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRLTVEENLLTGLAALP---RRSRKIPDEI 114 (230)
T ss_pred HHHHHHHHhCCCCC-CCCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCCCcHHHHHHHHHHhcC---cchHHHHHHH
Confidence 8999999 997543 7899999999875422222 35679999999999999999999999876321 112222
Q ss_pred HHHHh-hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC-CCEEEEEEcCCCH
Q psy8953 75 KDQVS-LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ-GRTVVATIHTPSA 128 (286)
Q Consensus 75 ~~~v~-l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~-g~tii~~~h~~~~ 128 (286)
.+.+. +. ....+||||+| ||++||+.++.++.++|.+++++ |.|||+++|+++
T Consensus 115 l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~- 193 (230)
T TIGR03410 115 YELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLD- 193 (230)
T ss_pred HHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHH-
Confidence 22222 11 44568999999 99999999999999999999875 899999999986
Q ss_pred HHHHHhhhHhhhcCCeeecccChhcH
Q psy8953 129 LLFEKFDSLYALAKGHCIYRGSISRL 154 (286)
Q Consensus 129 ~~~~~~d~v~~l~~G~i~~~g~~~~~ 154 (286)
.+...+|++++|++|+++..|+.+++
T Consensus 194 ~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 194 FARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred HHHHhCCEEEEEECCEEEEECCHHHc
Confidence 46678999999999999999988765
No 154
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.86 E-value=9.6e-22 Score=164.03 Aligned_cols=146 Identities=18% Similarity=0.213 Sum_probs=114.3
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCC-CCHHHHHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFK-VSTQEKKDQV 78 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~-~~~~~~~~~v 78 (286)
||||+++ +|..+. .+|+|+++|+++... ..+++.++||+|++.+++.+||.|++.|......... ..++++.+.+
T Consensus 37 KSTLl~~l~G~~~~-~~G~i~~~g~~~~~~--~~~~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l 113 (213)
T TIGR01277 37 KSTLLNLIAGFIEP-ASGSIKVNDQSHTGL--APYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAA 113 (213)
T ss_pred HHHHHHHHhcCCCC-CCcEEEECCEEcccC--ChhccceEEEeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHH
Confidence 8999999 997554 689999999987542 2356789999999999999999999998764211100 0112222222
Q ss_pred h---hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC-CCEEEEEEcCCCHHH
Q psy8953 79 S---LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ-GRTVVATIHTPSALL 130 (286)
Q Consensus 79 ~---l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~-g~tii~~~h~~~~~~ 130 (286)
+ +. ....+||||+| ||++||+.++..++++|+++.++ |.|||+++|+++ .+
T Consensus 114 ~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~-~~ 192 (213)
T TIGR01277 114 QQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLS-DA 192 (213)
T ss_pred HHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH
Confidence 2 22 44678999999 99999999999999999999875 899999999986 45
Q ss_pred HHHhhhHhhhcCCeeecccC
Q psy8953 131 FEKFDSLYALAKGHCIYRGS 150 (286)
Q Consensus 131 ~~~~d~v~~l~~G~i~~~g~ 150 (286)
.+++|++++|++|+++..|.
T Consensus 193 ~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 193 RAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred HhhcCeEEEEECCeEEEecC
Confidence 67899999999999998764
No 155
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.86 E-value=1.2e-21 Score=167.50 Aligned_cols=151 Identities=18% Similarity=0.225 Sum_probs=119.1
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchh-------------hhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCC
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSAC-------------IEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLG 66 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~-------------~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~ 66 (286)
||||+++ +|..+. .+|+|.++|+++...+ ...+++.++||+|++.+++..||.|++.++....
T Consensus 39 KSTLl~~l~G~~~~-~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~-- 115 (252)
T TIGR03005 39 KSTILRILMTLEPI-DEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLV-- 115 (252)
T ss_pred HHHHHHHHhCCCCC-CceEEEECCEEccccccccccccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHh--
Confidence 8999999 997543 6999999999875321 1245678999999999999999999999875311
Q ss_pred CCCCHHHHHHHHh-------hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC
Q psy8953 67 FKVSTQEKKDQVS-------LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ 115 (286)
Q Consensus 67 ~~~~~~~~~~~v~-------l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~ 115 (286)
.....++..+++. +. ....+||||+| ||++||+.++..++++|++++++
T Consensus 116 ~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~ 195 (252)
T TIGR03005 116 LGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASE 195 (252)
T ss_pred cCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 1122333333332 21 34568999999 99999999999999999999875
Q ss_pred -CCEEEEEEcCCCHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 116 -GRTVVATIHTPSALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 116 -g~tii~~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
|.|||+++|+++ .+..++||+++|++|++++.|+.+++.
T Consensus 196 ~~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 235 (252)
T TIGR03005 196 HDLTMLLVTHEMG-FAREFADRVCFFDKGRIVEQGKPDEIF 235 (252)
T ss_pred cCcEEEEEeCCHH-HHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 999999999986 466889999999999999998876654
No 156
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=1.2e-21 Score=167.90 Aligned_cols=150 Identities=14% Similarity=0.104 Sum_probs=116.8
Q ss_pred Cchhhhh-cCCCCC----CceeEEEECCeecCc--hhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHH
Q psy8953 1 MSIELNV-QSIRLT----GSSGKILVNGQERKS--ACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQE 73 (286)
Q Consensus 1 ~stll~~-~g~~~~----~~~G~i~~~g~~~~~--~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~ 73 (286)
|||||++ +|..+. ..+|+|+++|+++.. .....+++.+|||+|++.++. +||+|++.|+.+... ....++
T Consensus 46 KSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~ 122 (254)
T PRK14273 46 KSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHG--TKDKKK 122 (254)
T ss_pred HHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeecccccc-CcHHHHHHHHHHhcC--CCCHHH
Confidence 8999999 997543 268999999998642 112345678999999998774 999999999875321 112223
Q ss_pred HHHHHh-------h--------h-hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCE
Q psy8953 74 KKDQVS-------L--------E-LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRT 118 (286)
Q Consensus 74 ~~~~v~-------l--------~-~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~t 118 (286)
..+++. + . ....+|||||| ||++||+.++..++++|+++++ +.|
T Consensus 123 ~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~t 201 (254)
T PRK14273 123 LDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKE-SYT 201 (254)
T ss_pred HHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhc-CCE
Confidence 333222 1 1 33568899999 9999999999999999999965 789
Q ss_pred EEEEEcCCCHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 119 VVATIHTPSALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 119 ii~~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
||+++|+++. +..++||+++|++|+++..|+++++.
T Consensus 202 vii~sH~~~~-~~~~~d~i~~l~~G~i~~~g~~~~~~ 237 (254)
T PRK14273 202 IIIVTHNMQQ-AGRISDRTAFFLNGCIEEESSTDELF 237 (254)
T ss_pred EEEEeCCHHH-HHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999864 56889999999999999999887764
No 157
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=9e-22 Score=167.77 Aligned_cols=151 Identities=15% Similarity=0.113 Sum_probs=117.1
Q ss_pred Cchhhhh-cCCCC--CCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHH
Q psy8953 1 MSIELNV-QSIRL--TGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQ 77 (286)
Q Consensus 1 ~stll~~-~g~~~--~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~ 77 (286)
||||+++ +|..+ ...+|+|.++|+++...+...+++.++||+|++.+|+ .||+|+++|+...+- ...+.++..++
T Consensus 41 KSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~-~~~~~~~~~~~ 118 (246)
T PRK14269 41 KSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFV-KSIYENISYAPKLHG-MIKNKDEEEAL 118 (246)
T ss_pred HHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCcccc-ccHHHHhhhHHhhcC-cccChHHHHHH
Confidence 8999999 99753 3478999999999865333455678999999998876 699999999865321 10011222222
Q ss_pred ----Hh---h----h-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEE
Q psy8953 78 ----VS---L----E-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVAT 122 (286)
Q Consensus 78 ----v~---l----~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~ 122 (286)
++ + . ....+||||+| ||++||+.++..+.+.|+++.+ |.|||++
T Consensus 119 ~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~ 197 (246)
T PRK14269 119 VVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH-NLSMIMV 197 (246)
T ss_pred HHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEE
Confidence 22 2 1 22458899999 9999999999999999999975 8999999
Q ss_pred EcCCCHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 123 IHTPSALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 123 ~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
+|+++. +..++|++++|++|+++..|++.++.
T Consensus 198 tH~~~~-~~~~~d~i~~l~~G~i~~~g~~~~~~ 229 (246)
T PRK14269 198 THNMQQ-GKRVADYTAFFHLGELIEFGESKEFF 229 (246)
T ss_pred ecCHHH-HHhhCcEEEEEECCEEEEECCHHHHH
Confidence 999864 66889999999999999999877654
No 158
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.86 E-value=1.1e-21 Score=165.53 Aligned_cols=145 Identities=21% Similarity=0.208 Sum_probs=113.9
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
||||+++ +|..+. .+|+|.+||+++... ....+||+|++.+++.+||.|++.+......+ ....++..+++.
T Consensus 24 KSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~-----~~~~~~v~q~~~l~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~ 96 (230)
T TIGR01184 24 KSTLLNLISGLAQP-TSGGVILEGKQITEP-----GPDRMVVFQNYSLLPWLTVRENIALAVDRVLP-DLSKSERRAIVE 96 (230)
T ss_pred HHHHHHHHhCCCCC-CCceEEECCEECCCC-----ChhheEEecCcccCCCCCHHHHHHHHHHhccc-CCCHHHHHHHHH
Confidence 8999999 997653 799999999987541 12248999999999999999999987531111 223333333322
Q ss_pred -------hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC-CCEEEEEEcCCC
Q psy8953 80 -------LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ-GRTVVATIHTPS 127 (286)
Q Consensus 80 -------l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~-g~tii~~~h~~~ 127 (286)
+. ....+|||||| ||++||+.++.++.++|++++++ |+|||+++|+++
T Consensus 97 ~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~ 176 (230)
T TIGR01184 97 EHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVD 176 (230)
T ss_pred HHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 22 34568999999 99999999999999999999875 999999999986
Q ss_pred HHHHHHhhhHhhhcCCeeecccChhc
Q psy8953 128 ALLFEKFDSLYALAKGHCIYRGSISR 153 (286)
Q Consensus 128 ~~~~~~~d~v~~l~~G~i~~~g~~~~ 153 (286)
.+..++|++++|++|+++..|+..+
T Consensus 177 -~~~~~~d~v~~l~~G~i~~~~~~~~ 201 (230)
T TIGR01184 177 -EALLLSDRVVMLTNGPAANIGQILE 201 (230)
T ss_pred -HHHHhcCEEEEEeCCcEecccCcee
Confidence 4668899999999999998875443
No 159
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.86 E-value=9.5e-22 Score=168.68 Aligned_cols=153 Identities=17% Similarity=0.219 Sum_probs=118.1
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcC-CCCCCCHHHHHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLK-LGFKVSTQEKKDQV 78 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~-~~~~~~~~~~~~~v 78 (286)
|||||++ +|..+. .+|+|+++|.++...+...+++.+|||+|++.+++.+||+|++.|+.... .......+...+.+
T Consensus 41 KSTLl~~i~G~~~p-~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l 119 (258)
T PRK13548 41 KSTLLRALSGELSP-DSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAAL 119 (258)
T ss_pred HHHHHHHHhCCCCC-CCCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHH
Confidence 8999999 997543 78999999998764333445678999999998888899999999976521 11000011112222
Q ss_pred h---hh-----hhhcccCCccc-------------------------cCCCcchHHHHHHHHHHHHHH-hCCCEEEEEEc
Q psy8953 79 S---LE-----LWNNFCKKKKK-------------------------KKRGLDSSSCSQCVSLLANLA-KQGRTVVATIH 124 (286)
Q Consensus 79 ~---l~-----~~~~~~gG~kq-------------------------ptsgLD~~~~~~~~~~l~~l~-~~g~tii~~~h 124 (286)
+ +. ....+||||+| ||++||+.++..+.++|++++ +.|.|||+++|
T Consensus 120 ~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH 199 (258)
T PRK13548 120 AQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLH 199 (258)
T ss_pred HHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEEC
Confidence 2 22 34568899987 999999999999999999998 56999999999
Q ss_pred CCCHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 125 TPSALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 125 ~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
+++ .+...+|++++|++|++++.|+++++.
T Consensus 200 ~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (258)
T PRK13548 200 DLN-LAARYADRIVLLHQGRLVADGTPAEVL 229 (258)
T ss_pred CHH-HHHHhcCEEEEEECCEEEeeCCHHHHh
Confidence 986 466789999999999999999887654
No 160
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.86 E-value=8.2e-22 Score=169.77 Aligned_cols=153 Identities=16% Similarity=0.209 Sum_probs=118.7
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHh-c-CCCCCCCHH---HH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASH-L-KLGFKVSTQ---EK 74 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~-~-~~~~~~~~~---~~ 74 (286)
|||||++ +|..+. .+|+|.+||+++...+...+++.++||+|++.+++..||+|++.++.. . .+....... .+
T Consensus 46 KSTLl~~i~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (265)
T PRK10253 46 KSTLLRTLSRLMTP-AHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAV 124 (265)
T ss_pred HHHHHHHHcCCCCC-CCcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHH
Confidence 8999999 997543 689999999987543334455789999999999999999999988632 1 110001111 11
Q ss_pred HHHHh---hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC-CCEEEEEEcCC
Q psy8953 75 KDQVS---LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ-GRTVVATIHTP 126 (286)
Q Consensus 75 ~~~v~---l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~-g~tii~~~h~~ 126 (286)
.+.++ +. ....+||||+| ||++||+.++..+.++|+++.++ |.|||+++|++
T Consensus 125 ~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~ 204 (265)
T PRK10253 125 TKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDL 204 (265)
T ss_pred HHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 22122 22 44568999999 99999999999999999999874 99999999998
Q ss_pred CHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 127 SALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 127 ~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
+ .+..++|++++|++|++++.|+++++.
T Consensus 205 ~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (265)
T PRK10253 205 N-QACRYASHLIALREGKIVAQGAPKEIV 232 (265)
T ss_pred H-HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 6 467899999999999999999987764
No 161
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.86 E-value=1.1e-21 Score=163.68 Aligned_cols=141 Identities=21% Similarity=0.271 Sum_probs=111.5
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCc--hhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKS--ACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQ 77 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~--~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~ 77 (286)
|||||++ +|..+. .+|+|.++|+++.. .....+++.++||+|++.+++.+||.|++.++.... ...+.++..++
T Consensus 39 KSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~--~~~~~~~~~~~ 115 (213)
T cd03262 39 KSTLLRCINLLEEP-DSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKV--KGMSKAEAEER 115 (213)
T ss_pred HHHHHHHHhCCCCC-CCceEEECCEECCccchhHHHHHhcceEEecccccCCCCcHHHHHHhHHHHh--cCCCHHHHHHH
Confidence 8999999 997654 68999999998742 222445688999999999999999999999975310 11223333333
Q ss_pred Hh-------h----h-hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcCC
Q psy8953 78 VS-------L----E-LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVATIHTP 126 (286)
Q Consensus 78 v~-------l----~-~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~~ 126 (286)
+. + . ....+||||+| ||++||+.++..+.++|+++++.|+|||+++|++
T Consensus 116 ~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~ 195 (213)
T cd03262 116 ALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEM 195 (213)
T ss_pred HHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 22 2 2 44668999999 9999999999999999999988899999999998
Q ss_pred CHHHHHHhhhHhhhcCCee
Q psy8953 127 SALLFEKFDSLYALAKGHC 145 (286)
Q Consensus 127 ~~~~~~~~d~v~~l~~G~i 145 (286)
+ .+..++|++++|++|++
T Consensus 196 ~-~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 196 G-FAREVADRVIFMDDGRI 213 (213)
T ss_pred H-HHHHhCCEEEEEeCCcC
Confidence 6 46688999999999975
No 162
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.86 E-value=1.4e-21 Score=164.63 Aligned_cols=145 Identities=19% Similarity=0.251 Sum_probs=112.6
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhh---hcccceeeEEecCc--ccCCCCCHHHHHHHHHhcCCCCCCCHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACI---EQFLKLSCYIQQDD--ALRPKLTVTEAMMIASHLKLGFKVSTQEK 74 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~---~~~~~~~g~v~Q~~--~~~~~~tV~e~l~f~~~~~~~~~~~~~~~ 74 (286)
|||||++ +|..+. .+|+|+++|+++...+. ..+++.+|||+|++ .+++.+||+|++.|.++...+. ..++.
T Consensus 44 KSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~--~~~~~ 120 (228)
T cd03257 44 KSTLARAILGLLKP-TSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKL--SKKEA 120 (228)
T ss_pred HHHHHHHHhCCCCC-CCceEEECCEEccccchhhHHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCC--cHHHH
Confidence 8999999 997543 78999999998864321 34567899999998 3567899999999987642211 11111
Q ss_pred HH-----HHh---h-----h-hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC-CCEEE
Q psy8953 75 KD-----QVS---L-----E-LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ-GRTVV 120 (286)
Q Consensus 75 ~~-----~v~---l-----~-~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~-g~tii 120 (286)
.+ .++ + . ....+||||+| ||++||+.++..+.+.|++++++ |.|||
T Consensus 121 ~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii 200 (228)
T cd03257 121 RKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLL 200 (228)
T ss_pred HHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 11 111 2 1 34568999999 99999999999999999999876 99999
Q ss_pred EEEcCCCHHHHHHhhhHhhhcCCeeeccc
Q psy8953 121 ATIHTPSALLFEKFDSLYALAKGHCIYRG 149 (286)
Q Consensus 121 ~~~h~~~~~~~~~~d~v~~l~~G~i~~~g 149 (286)
+++|+++ .+..++|++++|++|+++..|
T Consensus 201 ~~sH~~~-~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 201 FITHDLG-VVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred EEeCCHH-HHHHhcCeEEEEeCCEEEecC
Confidence 9999986 455789999999999998654
No 163
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.86 E-value=1.3e-21 Score=168.59 Aligned_cols=151 Identities=17% Similarity=0.246 Sum_probs=118.2
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcc--cCCCCCHHHHHHHHHhcCCCCCCCHHHHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDA--LRPKLTVTEAMMIASHLKLGFKVSTQEKKDQ 77 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~--~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~ 77 (286)
|||||++ +|..+. .+|+|.++|.++........++.++||+|++. +++.+||.|.+.|..+... ....++..++
T Consensus 52 KSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~ 128 (267)
T PRK15112 52 KSTLAKMLAGMIEP-TSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNT--DLEPEQREKQ 128 (267)
T ss_pred HHHHHHHHhCCCCC-CCCEEEECCEECCCCchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhcc--CCCHHHHHHH
Confidence 8999999 997544 78999999998754222334567999999985 5688999999999876421 1223333322
Q ss_pred Hh-------h-h-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC-CCEEEEEEc
Q psy8953 78 VS-------L-E-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ-GRTVVATIH 124 (286)
Q Consensus 78 v~-------l-~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~-g~tii~~~h 124 (286)
+. + . ....+||||+| ||++||+.++..+.++|++++++ |.|||+++|
T Consensus 129 ~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH 208 (267)
T PRK15112 129 IIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQ 208 (267)
T ss_pred HHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeC
Confidence 22 3 1 23568999999 99999999999999999999875 999999999
Q ss_pred CCCHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 125 TPSALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 125 ~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
+++ .+..++|++++|++|++++.|+++++.
T Consensus 209 ~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 238 (267)
T PRK15112 209 HLG-MMKHISDQVLVMHQGEVVERGSTADVL 238 (267)
T ss_pred CHH-HHHHhcCEEEEEECCEEEecCCHHHHh
Confidence 986 466789999999999999998876654
No 164
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.86 E-value=1.4e-21 Score=160.10 Aligned_cols=154 Identities=19% Similarity=0.250 Sum_probs=124.5
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhc-ccceeeEEecCcccCCCCCHHHHHHHHHhcCC--------CC-CC
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQ-FLKLSCYIQQDDALRPKLTVTEAMMIASHLKL--------GF-KV 69 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~-~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~--------~~-~~ 69 (286)
||||+|+ +|..+. .+|+|.++|+++...+..+ .+.-++--||....|+.+||.|+++.++..+. +. ..
T Consensus 43 KTTlfNlitG~~~P-~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~ 121 (250)
T COG0411 43 KTTLFNLITGFYKP-SSGTVIFRGRDITGLPPHRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARK 121 (250)
T ss_pred ceeeeeeecccccC-CCceEEECCcccCCCCHHHHHhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchh
Confidence 8999999 995433 7899999999998754433 46789999999999999999999999976432 11 01
Q ss_pred CHHHHHHHHh-------hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC-CC
Q psy8953 70 STQEKKDQVS-------LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ-GR 117 (286)
Q Consensus 70 ~~~~~~~~v~-------l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~-g~ 117 (286)
..++..++.. |. ....+++||++ |.+||.+.-+.++..+|++++++ |+
T Consensus 122 ~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~ 201 (250)
T COG0411 122 EEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGV 201 (250)
T ss_pred hHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCc
Confidence 2333334433 33 23457788877 99999999999999999999985 89
Q ss_pred EEEEEEcCCCHHHHHHhhhHhhhcCCeeecccChhcHHH
Q psy8953 118 TVVATIHTPSALLFEKFDSLYALAKGHCIYRGSISRLVP 156 (286)
Q Consensus 118 tii~~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 156 (286)
||+++||+.. .++.+||||+||+.|+++++|+|+++..
T Consensus 202 tillIEHdM~-~Vm~l~dri~Vl~~G~~IAeG~P~eV~~ 239 (250)
T COG0411 202 TILLIEHDMK-LVMGLADRIVVLNYGEVIAEGTPEEVRN 239 (250)
T ss_pred EEEEEEeccH-HHhhhccEEEeccCCcCcccCCHHHHhc
Confidence 9999999996 6889999999999999999999999864
No 165
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=1.3e-21 Score=160.65 Aligned_cols=125 Identities=35% Similarity=0.604 Sum_probs=107.2
Q ss_pred Cchhhhh-cCCCC-CCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHH
Q psy8953 1 MSIELNV-QSIRL-TGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQV 78 (286)
Q Consensus 1 ~stll~~-~g~~~-~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v 78 (286)
||||+++ +|... ...+|+|.++|+++. ..+++.++||+|++.+++.+||+|++.|+..++
T Consensus 46 KSTLl~~l~G~~~~~~~~G~i~~~g~~~~----~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-------------- 107 (192)
T cd03232 46 KTTLLDVLAGRKTAGVITGEILINGRPLD----KNFQRSTGYVEQQDVHSPNLTVREALRFSALLR-------------- 107 (192)
T ss_pred HHHHHHHHhCCCcCCCcceEEEECCEehH----HHhhhceEEecccCccccCCcHHHHHHHHHHHh--------------
Confidence 8999999 99753 458999999999875 345678999999999999999999999976421
Q ss_pred hhhhhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHhhhHhh
Q psy8953 79 SLELWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVATIHTPSALLFEKFDSLYA 139 (286)
Q Consensus 79 ~l~~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~~~~~~~~~~d~v~~ 139 (286)
.+||||+| ||++||+.++..+++.|+++++.|.|||+++|+++..+...+|++++
T Consensus 108 ------~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~ 181 (192)
T cd03232 108 ------GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLL 181 (192)
T ss_pred ------cCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEE
Confidence 45677766 99999999999999999999877999999999997445678999999
Q ss_pred hcC-Ceeeccc
Q psy8953 140 LAK-GHCIYRG 149 (286)
Q Consensus 140 l~~-G~i~~~g 149 (286)
|++ |++++.|
T Consensus 182 l~~~g~i~~~g 192 (192)
T cd03232 182 LKRGGKTVYFG 192 (192)
T ss_pred EcCCCeEEeCC
Confidence 998 9999865
No 166
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=8.4e-22 Score=167.42 Aligned_cols=149 Identities=18% Similarity=0.144 Sum_probs=117.8
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
|||||++ +|..+. .+|+|+++|+++...+...+++.++||+|++.+++ .||+|++.+....+ ....++..+.++
T Consensus 42 KSTLl~~l~Gl~~p-~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~---~~~~~~~~~~l~ 116 (241)
T PRK14250 42 KSTLIKLINRLIDP-TEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFE-GTVKDNIEYGPMLK---GEKNVDVEYYLS 116 (241)
T ss_pred HHHHHHHHhCCCCC-CCcEEEECCEEhhhcChHHhhhcEEEEecCchhch-hhHHHHHhcchhhc---CcHHHHHHHHHH
Confidence 8999999 997543 68999999998764333455678999999998776 69999999876432 111222222222
Q ss_pred ---hh------hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC-CCEEEEEEcCCCHHH
Q psy8953 80 ---LE------LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ-GRTVVATIHTPSALL 130 (286)
Q Consensus 80 ---l~------~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~-g~tii~~~h~~~~~~ 130 (286)
+. ....+||||+| ||++||+.++..+.+.|++++++ |.|||+++|+++. +
T Consensus 117 ~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~-~ 195 (241)
T PRK14250 117 IVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQ-A 195 (241)
T ss_pred HcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHH-H
Confidence 21 34568999999 99999999999999999999874 9999999999864 6
Q ss_pred HHHhhhHhhhcCCeeecccChhcHH
Q psy8953 131 FEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 131 ~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
..++|++++|++|+++..|++.++.
T Consensus 196 ~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (241)
T PRK14250 196 KRIGDYTAFLNKGILVEYAKTYDFF 220 (241)
T ss_pred HHhCCEEEEEeCCEEEEeCCHHHHh
Confidence 6889999999999999998877654
No 167
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.86 E-value=1e-21 Score=152.13 Aligned_cols=145 Identities=22% Similarity=0.247 Sum_probs=118.2
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchh---hhcc-cceeeEEecCcccCCCCCHHHHHHHHHhcCCCCC-CCHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSAC---IEQF-LKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFK-VSTQEK 74 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~---~~~~-~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~-~~~~~~ 74 (286)
|||||-+ ||+... .+|+|.+.|++....+ ...+ .+.+|||||...++|++|-.|+++..++++.... .+++.-
T Consensus 49 KSTLl~vlAGLd~~-ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A 127 (228)
T COG4181 49 KSTLLAVLAGLDDP-SSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGA 127 (228)
T ss_pred HHhHHHHHhcCCCC-CCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHH
Confidence 8999999 997655 8999999999986431 1222 4899999999999999999999999999866211 111111
Q ss_pred ---HHHHh----hh-hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC-CCEEEEEEcCC
Q psy8953 75 ---KDQVS----LE-LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ-GRTVVATIHTP 126 (286)
Q Consensus 75 ---~~~v~----l~-~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~-g~tii~~~h~~ 126 (286)
.++|. |. ++.++||||.| ||-+||.++..++.++|-.++++ |+|+|+++|+|
T Consensus 128 ~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~ 207 (228)
T COG4181 128 KALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDP 207 (228)
T ss_pred HHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCH
Confidence 12333 34 78889999999 99999999999999999999886 99999999998
Q ss_pred CHHHHHHhhhHhhhcCCeeecc
Q psy8953 127 SALLFEKFDSLYALAKGHCIYR 148 (286)
Q Consensus 127 ~~~~~~~~d~v~~l~~G~i~~~ 148 (286)
. ++..|||.+-|..|+++.+
T Consensus 208 ~--LA~Rc~R~~r~~~G~l~~~ 227 (228)
T COG4181 208 Q--LAARCDRQLRLRSGRLVED 227 (228)
T ss_pred H--HHHhhhheeeeecceeccC
Confidence 4 6788999999999999753
No 168
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.86 E-value=2e-21 Score=164.62 Aligned_cols=149 Identities=21% Similarity=0.279 Sum_probs=117.6
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
||||+++ +|..+. .+|+|.++|.++...+. ...+.++||+|++.+++.+||.|++.+.+..+ ..+.++..+++.
T Consensus 40 KSTLl~~l~G~~~p-~~G~i~~~g~~i~~~~~-~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~ 114 (236)
T TIGR03864 40 KSTLFSLLTRLYVA-QEGQISVAGHDLRRAPR-AALARLGVVFQQPTLDLDLSVRQNLRYHAALH---GLSRAEARERIA 114 (236)
T ss_pred HHHHHHHHhCCcCC-CceEEEECCEEcccCCh-hhhhhEEEeCCCCCCcccCcHHHHHHHHHHhc---CCCHHHHHHHHH
Confidence 8999999 997543 68999999998754322 22357999999998889999999999877642 122333322222
Q ss_pred -------hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHh-CCCEEEEEEcCCC
Q psy8953 80 -------LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAK-QGRTVVATIHTPS 127 (286)
Q Consensus 80 -------l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~-~g~tii~~~h~~~ 127 (286)
+. ....+||||+| ||++||+.++..+.++|+++++ .|.|||+++|+++
T Consensus 115 ~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~ 194 (236)
T TIGR03864 115 ALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVD 194 (236)
T ss_pred HHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChh
Confidence 22 34568999999 9999999999999999999986 5999999999997
Q ss_pred HHHHHHhhhHhhhcCCeeecccChhcHHH
Q psy8953 128 ALLFEKFDSLYALAKGHCIYRGSISRLVP 156 (286)
Q Consensus 128 ~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 156 (286)
. +. .+|++++|++|+++..|+++++..
T Consensus 195 ~-~~-~~d~i~~l~~G~i~~~~~~~~~~~ 221 (236)
T TIGR03864 195 E-IE-ADDRLVVLHRGRVLADGAAAELRG 221 (236)
T ss_pred h-Hh-hCCEEEEEeCCeEEEeCCHHHHHH
Confidence 5 43 499999999999999998776643
No 169
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.86 E-value=1.4e-21 Score=168.28 Aligned_cols=151 Identities=17% Similarity=0.217 Sum_probs=117.2
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhh---hcccceeeEEecCcc--cCCCCCHHHHHHHHHhcCCCCCCCHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACI---EQFLKLSCYIQQDDA--LRPKLTVTEAMMIASHLKLGFKVSTQEK 74 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~---~~~~~~~g~v~Q~~~--~~~~~tV~e~l~f~~~~~~~~~~~~~~~ 74 (286)
|||||++ +|..+. .+|+|+++|+++..... ..+++.+|||+|++. +++.+||+|++.+.++... ....++.
T Consensus 50 KSTLl~~l~Gl~~p-~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~ 126 (265)
T TIGR02769 50 KSTLARLLLGLEKP-AQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLT--SLDESEQ 126 (265)
T ss_pred HHHHHHHHhCCCCC-CCcEEEECCEEccccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhc--CCCHHHH
Confidence 8999999 997543 78999999998754211 224578999999973 5688999999998765211 1122222
Q ss_pred HHHHh-------h-----h-hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC-CCEEEE
Q psy8953 75 KDQVS-------L-----E-LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ-GRTVVA 121 (286)
Q Consensus 75 ~~~v~-------l-----~-~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~-g~tii~ 121 (286)
.+++. + . ....+||||+| ||++||+.++..+++.|++++++ |.|||+
T Consensus 127 ~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii 206 (265)
T TIGR02769 127 KARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLF 206 (265)
T ss_pred HHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEE
Confidence 22222 2 1 33568899999 99999999999999999999875 999999
Q ss_pred EEcCCCHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 122 TIHTPSALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 122 ~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
++|+++ .+..++|++++|++|++++.|+++++.
T Consensus 207 vsH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 239 (265)
T TIGR02769 207 ITHDLR-LVQSFCQRVAVMDKGQIVEECDVAQLL 239 (265)
T ss_pred EeCCHH-HHHHHhcEEEEEeCCEEEEECCHHHHc
Confidence 999986 466789999999999999999987664
No 170
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=1.9e-21 Score=164.37 Aligned_cols=148 Identities=23% Similarity=0.256 Sum_probs=118.6
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
||||+++ +|..+. .+|+|.++|+++.... ..++.+|||+|++.+++.+||.|++.|..+... ...+...+++.
T Consensus 39 KSTLl~~l~g~~~~-~~G~i~~~g~~~~~~~--~~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~~---~~~~~~~~~~~ 112 (232)
T cd03300 39 KTTLLRLIAGFETP-TSGEILLDGKDITNLP--PHKRPVNTVFQNYALFPHLTVFENIAFGLRLKK---LPKAEIKERVA 112 (232)
T ss_pred HHHHHHHHhcCCCC-CceEEEECCEEcCcCC--hhhcceEEEecccccCCCCcHHHHHHHHHHhcC---CCHHHHHHHHH
Confidence 8999999 997654 6899999999886421 225789999999999999999999999876421 22222222222
Q ss_pred -------hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC-CCEEEEEEcCCC
Q psy8953 80 -------LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ-GRTVVATIHTPS 127 (286)
Q Consensus 80 -------l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~-g~tii~~~h~~~ 127 (286)
+. ....+||||+| ||++||+.++..+.++|++++++ |.|||++.|+++
T Consensus 113 ~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~ 192 (232)
T cd03300 113 EALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQE 192 (232)
T ss_pred HHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 21 34568899999 99999999999999999999875 999999999986
Q ss_pred HHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 128 ALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 128 ~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
. +.+++|++++|++|++++.|+.++..
T Consensus 193 ~-~~~~~d~i~~l~~G~~~~~~~~~~~~ 219 (232)
T cd03300 193 E-ALTMSDRIAVMNKGKIQQIGTPEEIY 219 (232)
T ss_pred H-HHHhcCEEEEEECCEEEecCCHHHHH
Confidence 4 66889999999999999999876654
No 171
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.86 E-value=1.6e-21 Score=167.82 Aligned_cols=153 Identities=22% Similarity=0.270 Sum_probs=117.4
Q ss_pred Cchhhhh-cCCCCC--CceeEEEECCeecCch-----hhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCC-----
Q psy8953 1 MSIELNV-QSIRLT--GSSGKILVNGQERKSA-----CIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGF----- 67 (286)
Q Consensus 1 ~stll~~-~g~~~~--~~~G~i~~~g~~~~~~-----~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~----- 67 (286)
||||+++ +|..+. +.+|+|+++|+++... ....+++.++||+|++.+++.+||.|++.|......+.
T Consensus 43 KSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~ 122 (262)
T PRK09984 43 KSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCF 122 (262)
T ss_pred HHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhc
Confidence 8999999 997543 3579999999987431 12344577999999999999999999999875311000
Q ss_pred CCCHHHHHHHHh-------hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC-
Q psy8953 68 KVSTQEKKDQVS-------LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ- 115 (286)
Q Consensus 68 ~~~~~~~~~~v~-------l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~- 115 (286)
....++.++++. +. ....+|||||| ||++||+.++..+.++|++++++
T Consensus 123 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~ 202 (262)
T PRK09984 123 SWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQND 202 (262)
T ss_pred ccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhc
Confidence 001122222222 22 44568999999 99999999999999999999864
Q ss_pred CCEEEEEEcCCCHHHHHHhhhHhhhcCCeeecccChhcH
Q psy8953 116 GRTVVATIHTPSALLFEKFDSLYALAKGHCIYRGSISRL 154 (286)
Q Consensus 116 g~tii~~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 154 (286)
|.|||+++|+++. +..++|++++|++|++++.|++++.
T Consensus 203 g~tvii~tH~~~~-~~~~~d~i~~l~~g~i~~~g~~~~~ 240 (262)
T PRK09984 203 GITVVVTLHQVDY-ALRYCERIVALRQGHVFYDGSSQQF 240 (262)
T ss_pred CCEEEEEeCCHHH-HHHhCCEEEEEECCEEEEeCCHHHh
Confidence 9999999999964 6688999999999999999987654
No 172
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.86 E-value=1.7e-21 Score=153.91 Aligned_cols=142 Identities=21% Similarity=0.243 Sum_probs=121.7
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
||||||+ ||+... ..|+|.+||.++.- -...-|.||||+.++|.+||.++++|++++ +++++.++.+++.
T Consensus 44 KTTLLnl~AGf~~P-~~G~i~l~~r~i~g-----PgaergvVFQ~~~LlPWl~~~dNvafgL~l---~Gi~k~~R~~~a~ 114 (259)
T COG4525 44 KTTLLNLIAGFVTP-SRGSIQLNGRRIEG-----PGAERGVVFQNEALLPWLNVIDNVAFGLQL---RGIEKAQRREIAH 114 (259)
T ss_pred HHHHHHHHhcCcCc-ccceEEECCEeccC-----CCccceeEeccCccchhhHHHHHHHHHHHh---cCCCHHHHHHHHH
Confidence 8999999 998765 78999999998853 345679999999999999999999999997 5577888777665
Q ss_pred -------hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC-CCEEEEEEcCCC
Q psy8953 80 -------LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ-GRTVVATIHTPS 127 (286)
Q Consensus 80 -------l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~-g~tii~~~h~~~ 127 (286)
|+ +...+|||+|| |...||.-+++++-.+|-++++. |..+++++|..+
T Consensus 115 q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ie 194 (259)
T COG4525 115 QMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIE 194 (259)
T ss_pred HHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHH
Confidence 33 44568899999 99999999999999999999885 999999999998
Q ss_pred HHHHHHhhhHhhhcC--CeeecccChh
Q psy8953 128 ALLFEKFDSLYALAK--GHCIYRGSIS 152 (286)
Q Consensus 128 ~~~~~~~d~v~~l~~--G~i~~~g~~~ 152 (286)
+.+ -++++++||+. |||+..-+++
T Consensus 195 EAl-flatrLvvlsp~pgRvv~~~~~d 220 (259)
T COG4525 195 EAL-FLATRLVVLSPGPGRVVERLPLD 220 (259)
T ss_pred HHH-hhhheeEEecCCCceeeEecCCC
Confidence 755 56999999984 8999876655
No 173
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=2.3e-21 Score=165.89 Aligned_cols=151 Identities=15% Similarity=0.167 Sum_probs=117.9
Q ss_pred Cchhhhh-cCCCCCC----ceeEEEECCeecCc--hhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHH
Q psy8953 1 MSIELNV-QSIRLTG----SSGKILVNGQERKS--ACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQE 73 (286)
Q Consensus 1 ~stll~~-~g~~~~~----~~G~i~~~g~~~~~--~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~ 73 (286)
||||+++ +|..+.. .+|+|.++|+++.. .....+++.++||+|++.+++.+||.|++.++..... ....++
T Consensus 43 KSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~--~~~~~~ 120 (252)
T PRK14272 43 KTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAG--IRDRDH 120 (252)
T ss_pred HHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcC--CCCHHH
Confidence 8999999 9975432 48999999998753 1123456789999999999999999999998765311 112233
Q ss_pred HHHHHh-------h--------h-hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCE
Q psy8953 74 KKDQVS-------L--------E-LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRT 118 (286)
Q Consensus 74 ~~~~v~-------l--------~-~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~t 118 (286)
..+++. + . ....+||||+| ||++||+.++..+.+.|+++++ +.|
T Consensus 121 ~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~t 199 (252)
T PRK14272 121 LMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK-VTT 199 (252)
T ss_pred HHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCe
Confidence 222221 1 1 33568899999 9999999999999999999975 799
Q ss_pred EEEEEcCCCHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 119 VVATIHTPSALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 119 ii~~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
||+++|+++ .+..++|++++|++|++++.|+++++.
T Consensus 200 iii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14272 200 IIIVTHNMH-QAARVSDTTSFFLVGDLVEHGPTDQLF 235 (252)
T ss_pred EEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999986 466789999999999999999987764
No 174
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.85 E-value=1.9e-21 Score=167.62 Aligned_cols=151 Identities=16% Similarity=0.168 Sum_probs=117.2
Q ss_pred Cchhhhh-cCCCCC----CceeEEEECCeecCc--hhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHH
Q psy8953 1 MSIELNV-QSIRLT----GSSGKILVNGQERKS--ACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQE 73 (286)
Q Consensus 1 ~stll~~-~g~~~~----~~~G~i~~~g~~~~~--~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~ 73 (286)
|||||++ +|..+. ..+|+|+++|+++.. .+...+++.+|||+|++.+++. ||.|++.|+++.+. ...+..+
T Consensus 58 KSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~-~~~~~~~ 135 (267)
T PRK14235 58 KSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHG-LARSKAE 135 (267)
T ss_pred HHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhcc-cccchHH
Confidence 8999999 997542 378999999998753 1223456789999999988875 99999999876421 1112233
Q ss_pred HHHHHh-------h--------h-hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCE
Q psy8953 74 KKDQVS-------L--------E-LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRT 118 (286)
Q Consensus 74 ~~~~v~-------l--------~-~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~t 118 (286)
..+++. + . ....+|||||| ||++||+.++..++++|+++++ +.|
T Consensus 136 ~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~t 214 (267)
T PRK14235 136 LDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYT 214 (267)
T ss_pred HHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCe
Confidence 222222 2 1 23458899999 9999999999999999999976 689
Q ss_pred EEEEEcCCCHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 119 VVATIHTPSALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 119 ii~~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
||+++|+++ .+..++|++++|++|+++..|+++++.
T Consensus 215 iiivtH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~ 250 (267)
T PRK14235 215 IVIVTHSMQ-QAARVSQRTAFFHLGNLVEVGDTEKMF 250 (267)
T ss_pred EEEEEcCHH-HHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999986 466889999999999999999877654
No 175
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=2.2e-21 Score=165.98 Aligned_cols=151 Identities=15% Similarity=0.143 Sum_probs=118.1
Q ss_pred Cchhhhh-cCCCC--C--CceeEEEECCeecCch--hhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHH
Q psy8953 1 MSIELNV-QSIRL--T--GSSGKILVNGQERKSA--CIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQE 73 (286)
Q Consensus 1 ~stll~~-~g~~~--~--~~~G~i~~~g~~~~~~--~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~ 73 (286)
||||+++ +|..+ . ..+|+|+++|+++... ....+++.++||+|++.+++.+||.|++.++.+... ..+.++
T Consensus 43 KSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~ 120 (252)
T PRK14256 43 KSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNG--RVNRSE 120 (252)
T ss_pred HHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcC--CCCHHH
Confidence 8999999 99753 2 2589999999987531 123456789999999999999999999998765321 112222
Q ss_pred HHHHHh-------hh---------hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCE
Q psy8953 74 KKDQVS-------LE---------LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRT 118 (286)
Q Consensus 74 ~~~~v~-------l~---------~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~t 118 (286)
..+++. +. ....+|||||| ||++||+.++..++++|+++++ +.|
T Consensus 121 ~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~t 199 (252)
T PRK14256 121 ADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE-KYT 199 (252)
T ss_pred HHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCc
Confidence 222222 10 23458899999 9999999999999999999976 589
Q ss_pred EEEEEcCCCHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 119 VVATIHTPSALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 119 ii~~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
||+++|+++ .+..++||+++|++|+++..|+++++.
T Consensus 200 iiivsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14256 200 IIIVTHNMQ-QAARVSDYTAFFYMGDLVECGETKKIF 235 (252)
T ss_pred EEEEECCHH-HHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999986 466889999999999999999887664
No 176
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.85 E-value=1.1e-21 Score=167.22 Aligned_cols=148 Identities=19% Similarity=0.231 Sum_probs=117.0
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHH--
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQ-- 77 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~-- 77 (286)
||||+++ +|..+ .+|+|.++|+++...+...+++.+|||+|++.+++.+||.|++.|....+ .+.++..++
T Consensus 35 KSTLl~~l~Gl~~--~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~----~~~~~~~~~~~ 108 (248)
T PRK03695 35 KSTLLARMAGLLP--GSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQYLTLHQPDK----TRTEAVASALN 108 (248)
T ss_pred HHHHHHHHcCCCC--CCeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHHHHHHhcCccC----CCcHHHHHHHH
Confidence 8999999 99865 38999999998864333455567999999998888999999999875321 122222222
Q ss_pred --Hh---hh-----hhhcccCCccc--------------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEE
Q psy8953 78 --VS---LE-----LWNNFCKKKKK--------------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVA 121 (286)
Q Consensus 78 --v~---l~-----~~~~~~gG~kq--------------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~ 121 (286)
++ +. ....+||||+| ||++||+.++..+.++|++++++|.|||+
T Consensus 109 ~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~ 188 (248)
T PRK03695 109 EVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVM 188 (248)
T ss_pred HHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 22 22 34568888865 88999999999999999999877999999
Q ss_pred EEcCCCHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 122 TIHTPSALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 122 ~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
++|+++ .+..++|++++|++|+++..|+.+++.
T Consensus 189 ~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 221 (248)
T PRK03695 189 SSHDLN-HTLRHADRVWLLKQGKLLASGRRDEVL 221 (248)
T ss_pred EecCHH-HHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 999986 466889999999999999999877653
No 177
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.85 E-value=1.3e-21 Score=162.96 Aligned_cols=139 Identities=22% Similarity=0.302 Sum_probs=109.7
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcc-cCCCCCHHHHHHHHHhcCCCCCCCHHHHHHH-
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDA-LRPKLTVTEAMMIASHLKLGFKVSTQEKKDQ- 77 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~-~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~- 77 (286)
||||+++ +|..+. .+|+|.+||+++...+...+++.++||+|++. .++.+||.|++.|++... .....+..++
T Consensus 40 KSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~ 115 (211)
T cd03225 40 KSTLLRLLNGLLGP-TSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENL---GLPEEEIEERV 115 (211)
T ss_pred HHHHHHHHhcCCCC-CCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCcHHHHHHHHHHHc---CCCHHHHHHHH
Confidence 8999999 997543 68999999998764333455678999999985 577899999999976532 1222222222
Q ss_pred ---Hh---hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcCCC
Q psy8953 78 ---VS---LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVATIHTPS 127 (286)
Q Consensus 78 ---v~---l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~~~ 127 (286)
++ +. ....+||||+| ||++||+.++..+++.|++++++|+|||+++|+++
T Consensus 116 ~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~ 195 (211)
T cd03225 116 EEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLD 195 (211)
T ss_pred HHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 22 22 34668999999 99999999999999999999877999999999986
Q ss_pred HHHHHHhhhHhhhcCCe
Q psy8953 128 ALLFEKFDSLYALAKGH 144 (286)
Q Consensus 128 ~~~~~~~d~v~~l~~G~ 144 (286)
.+..++|++++|++|+
T Consensus 196 -~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 196 -LLLELADRVIVLEDGK 211 (211)
T ss_pred -HHHHhCCEEEEEeCCC
Confidence 4667899999999885
No 178
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.85 E-value=1.8e-21 Score=163.29 Aligned_cols=140 Identities=19% Similarity=0.280 Sum_probs=109.5
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhc---cc-ceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQ---FL-KLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKK 75 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~---~~-~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~ 75 (286)
|||||++ +|..+. .+|+|.++|+++...+... ++ +.++||+|++.+++.+||+|++.|.+..+. .+..+..
T Consensus 44 KSTLl~~i~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~ 119 (221)
T TIGR02211 44 KSTLLHLLGGLDNP-TSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGK---KSVKEAK 119 (221)
T ss_pred HHHHHHHHhCCCCC-CCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhcC---CCHHHHH
Confidence 8999999 997543 6999999999875432222 22 579999999999999999999999765321 1222222
Q ss_pred HHHh-------h----h-hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC-CCEEEEEE
Q psy8953 76 DQVS-------L----E-LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ-GRTVVATI 123 (286)
Q Consensus 76 ~~v~-------l----~-~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~-g~tii~~~ 123 (286)
+++. + . ....+||||+| ||++||+.++..+.++|++++++ |.|||+++
T Consensus 120 ~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~t 199 (221)
T TIGR02211 120 ERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVT 199 (221)
T ss_pred HHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 2222 2 2 44678999999 99999999999999999999875 89999999
Q ss_pred cCCCHHHHHHhhhHhhhcCCeee
Q psy8953 124 HTPSALLFEKFDSLYALAKGHCI 146 (286)
Q Consensus 124 h~~~~~~~~~~d~v~~l~~G~i~ 146 (286)
|+++. + ..+|++++|++|+++
T Consensus 200 H~~~~-~-~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 200 HDLEL-A-KKLDRVLEMKDGQLF 220 (221)
T ss_pred CCHHH-H-hhcCEEEEEeCCEec
Confidence 99864 4 458999999999986
No 179
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=1.9e-21 Score=166.99 Aligned_cols=150 Identities=13% Similarity=0.120 Sum_probs=117.2
Q ss_pred Cchhhhh-cCCCC--CC--ceeEEEECCeecCch--hhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHH
Q psy8953 1 MSIELNV-QSIRL--TG--SSGKILVNGQERKSA--CIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQE 73 (286)
Q Consensus 1 ~stll~~-~g~~~--~~--~~G~i~~~g~~~~~~--~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~ 73 (286)
||||+++ +|..+ .. .+|+|+++|+++... ....+++.+|||+|++.+++. ||.|++.|..+... ..+.++
T Consensus 51 KSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~ 127 (259)
T PRK14274 51 KSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHG--TKNKKK 127 (259)
T ss_pred HHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCccccc-CHHHHHHhHHHhcC--CCCHHH
Confidence 8999999 99753 22 589999999987521 123456789999999988875 99999999876421 112333
Q ss_pred HHHHHh-------h--------h-hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCE
Q psy8953 74 KKDQVS-------L--------E-LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRT 118 (286)
Q Consensus 74 ~~~~v~-------l--------~-~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~t 118 (286)
..+++. + . ....+||||+| ||++||+.++..++++|+++++ +.|
T Consensus 128 ~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~t 206 (259)
T PRK14274 128 LQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYT 206 (259)
T ss_pred HHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCE
Confidence 333332 2 1 23458899999 9999999999999999999975 789
Q ss_pred EEEEEcCCCHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 119 VVATIHTPSALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 119 ii~~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
||+++|+++ .+..++||+++|++|+++..|+++++.
T Consensus 207 iiivtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 242 (259)
T PRK14274 207 IVIVTHNMQ-QAARVSDQTAFFYMGELVECNDTNKMF 242 (259)
T ss_pred EEEEEcCHH-HHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 999999986 466889999999999999999988764
No 180
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=1.4e-21 Score=163.13 Aligned_cols=146 Identities=19% Similarity=0.189 Sum_probs=112.5
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCch----hhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSA----CIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKK 75 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~----~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~ 75 (286)
||||+++ +|..+. .+|+|.++|+++... +....++.++||+|++.+++.+||.|++.+......+ ....++..
T Consensus 36 KSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~-~~~~~~~~ 113 (214)
T cd03297 36 KSTLLRCIAGLEKP-DGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRKRN-REDRISVD 113 (214)
T ss_pred HHHHHHHHhCCCCC-CCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCHHHHHHHHHhhCCH-HHHHHHHH
Confidence 8999999 997543 689999999987421 1123457899999999999999999999988652110 00111122
Q ss_pred HHHh---hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC-CCEEEEEEcCCC
Q psy8953 76 DQVS---LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ-GRTVVATIHTPS 127 (286)
Q Consensus 76 ~~v~---l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~-g~tii~~~h~~~ 127 (286)
+.++ +. ....+|||||| ||++||+.++..+.++|++++++ |.|||+++|+++
T Consensus 114 ~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~ 193 (214)
T cd03297 114 ELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLS 193 (214)
T ss_pred HHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHH
Confidence 2222 22 34568999999 99999999999999999999876 999999999986
Q ss_pred HHHHHHhhhHhhhcCCeeeccc
Q psy8953 128 ALLFEKFDSLYALAKGHCIYRG 149 (286)
Q Consensus 128 ~~~~~~~d~v~~l~~G~i~~~g 149 (286)
. +...+|++++|++|+++..|
T Consensus 194 ~-~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 194 E-AEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred H-HHHhcCEEEEEECCEEEecC
Confidence 4 66789999999999998764
No 181
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=2.5e-21 Score=160.13 Aligned_cols=133 Identities=26% Similarity=0.348 Sum_probs=109.8
Q ss_pred Cchhhhh-cCCCCC--CceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHH
Q psy8953 1 MSIELNV-QSIRLT--GSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQ 77 (286)
Q Consensus 1 ~stll~~-~g~~~~--~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~ 77 (286)
||||+++ +|..+. ..+|+|+++|+++.... ...++.++||+|++.+++.+||+|++.|+++..
T Consensus 46 KSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~-~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~------------- 111 (202)
T cd03233 46 CSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA-EKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK------------- 111 (202)
T ss_pred HHHHHHHhcccCCCCCCcceEEEECCEECccch-hhhcceEEEEecccccCCCCcHHHHHhhhhhhc-------------
Confidence 8999999 997552 58999999999876421 245678999999999999999999999987642
Q ss_pred Hhhh-hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC-CCEEEEEEcCCCHHHHHHhhh
Q psy8953 78 VSLE-LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ-GRTVVATIHTPSALLFEKFDS 136 (286)
Q Consensus 78 v~l~-~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~-g~tii~~~h~~~~~~~~~~d~ 136 (286)
+. ....+||||+| ||++||+.++..++++|++++++ +.|+|+++|+..+.+..++|+
T Consensus 112 --~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~ 189 (202)
T cd03233 112 --GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDK 189 (202)
T ss_pred --cccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCe
Confidence 11 34567888888 99999999999999999999875 778888777754567789999
Q ss_pred HhhhcCCeeeccc
Q psy8953 137 LYALAKGHCIYRG 149 (286)
Q Consensus 137 v~~l~~G~i~~~g 149 (286)
+++|++|++++.|
T Consensus 190 i~~l~~G~i~~~g 202 (202)
T cd03233 190 VLVLYEGRQIYYG 202 (202)
T ss_pred EEEEECCEEEecC
Confidence 9999999998754
No 182
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=2e-21 Score=169.46 Aligned_cols=150 Identities=16% Similarity=0.199 Sum_probs=117.7
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCc-----hhhhcccceeeEEecCcc-cCCCCCHHHHHHHHHhcCCCCCCCHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKS-----ACIEQFLKLSCYIQQDDA-LRPKLTVTEAMMIASHLKLGFKVSTQE 73 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~-----~~~~~~~~~~g~v~Q~~~-~~~~~tV~e~l~f~~~~~~~~~~~~~~ 73 (286)
|||||++ +|..+. .+|+|.++|+++.. .+...+++.+|||+|++. .+...||+|++.|+.... ....++
T Consensus 50 KSTLl~~l~Gl~~p-~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~ 125 (289)
T PRK13645 50 KSTMIQLTNGLIIS-ETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNL---GENKQE 125 (289)
T ss_pred HHHHHHHHhcCCCC-CCceEEECCEEccccccccccHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHc---CCCHHH
Confidence 8999999 997654 68999999998642 112345678999999984 344569999999987531 223444
Q ss_pred HHHHHh-------h-h-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC-CCEEE
Q psy8953 74 KKDQVS-------L-E-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ-GRTVV 120 (286)
Q Consensus 74 ~~~~v~-------l-~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~-g~tii 120 (286)
..+++. | . ....+|||||| ||++||+.++..++++|+++.++ |+|||
T Consensus 126 ~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii 205 (289)
T PRK13645 126 AYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRII 205 (289)
T ss_pred HHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEE
Confidence 333332 2 1 23568899999 99999999999999999999874 99999
Q ss_pred EEEcCCCHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 121 ATIHTPSALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 121 ~~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
+++|+++ .+..++|++++|++|++++.|+++++.
T Consensus 206 iisH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 239 (289)
T PRK13645 206 MVTHNMD-QVLRIADEVIVMHEGKVISIGSPFEIF 239 (289)
T ss_pred EEecCHH-HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999986 466889999999999999999987764
No 183
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=9.5e-22 Score=178.72 Aligned_cols=146 Identities=23% Similarity=0.261 Sum_probs=124.9
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
||||+++ +|+.+. .+|+|.+||++....+...|++.++||+|+|.+|. -|++|||.|+-. ..+.+++.+-++
T Consensus 360 KSTLl~lL~G~~~~-~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~-gTireNi~l~~~-----~~s~e~i~~al~ 432 (559)
T COG4988 360 KSTLLNLLLGFLAP-TQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFA-GTIRENILLARP-----DASDEEIIAALD 432 (559)
T ss_pred HHHHHHHHhCcCCC-CCceEEECCccccccCHHHHHhHeeeeCCCCcccc-ccHHHHhhccCC-----cCCHHHHHHHHH
Confidence 8999999 997766 89999999999988778899999999999998765 489999999874 246788876655
Q ss_pred ---hh---------------hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEE
Q psy8953 80 ---LE---------------LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVAT 122 (286)
Q Consensus 80 ---l~---------------~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~ 122 (286)
+. -...+||||+| ||++||.++.+.+.+.|.+++++ +|++++
T Consensus 433 ~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~-ktvl~i 511 (559)
T COG4988 433 QAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQ-KTVLVI 511 (559)
T ss_pred HhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhC-CeEEEE
Confidence 21 11237799999 99999999999999999999985 899999
Q ss_pred EcCCCHHHHHHhhhHhhhcCCeeecccChhcHHH
Q psy8953 123 IHTPSALLFEKFDSLYALAKGHCIYRGSISRLVP 156 (286)
Q Consensus 123 ~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 156 (286)
+||+.. ...+|+|++|++|+++..|.++++..
T Consensus 512 tHrl~~--~~~~D~I~vld~G~l~~~g~~~~L~~ 543 (559)
T COG4988 512 THRLED--AADADRIVVLDNGRLVEQGTHEELSE 543 (559)
T ss_pred EcChHH--HhcCCEEEEecCCceeccCCHHHHhh
Confidence 999853 35699999999999999999988753
No 184
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.85 E-value=9.5e-22 Score=187.54 Aligned_cols=145 Identities=17% Similarity=0.282 Sum_probs=121.4
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
||||+++ +|+. . .+|+|++||+++...+...+++.+|||+|||.+|.. |++|||.|+.. ..+.+|+.+-++
T Consensus 389 KSTL~~lL~g~~-p-~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~-TI~eNI~~g~~-----~~~~eei~~al~ 460 (588)
T PRK11174 389 KTSLLNALLGFL-P-YQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHG-TLRDNVLLGNP-----DASDEQLQQALE 460 (588)
T ss_pred HHHHHHHHhcCC-C-CCcEEEECCEecccCCHHHHHhheEEecCCCcCCCc-CHHHHhhcCCC-----CCCHHHHHHHHH
Confidence 8999999 9977 3 589999999999887778889999999999987754 99999999742 245777665444
Q ss_pred ----------h----h-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEE
Q psy8953 80 ----------L----E-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVA 121 (286)
Q Consensus 80 ----------l----~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~ 121 (286)
+ + ....+|||||| |||+||+.+...+.+.|+++.+ ++|+|+
T Consensus 461 ~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~-~~TvIi 539 (588)
T PRK11174 461 NAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASR-RQTTLM 539 (588)
T ss_pred HhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhC-CCEEEE
Confidence 1 1 12347899999 9999999999999999998864 799999
Q ss_pred EEcCCCHHHHHHhhhHhhhcCCeeecccChhcHHH
Q psy8953 122 TIHTPSALLFEKFDSLYALAKGHCIYRGSISRLVP 156 (286)
Q Consensus 122 ~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 156 (286)
++|+++. + ..+|++++|++|+++..|+.+++..
T Consensus 540 ItHrl~~-i-~~aD~Iivl~~G~i~e~G~~~eL~~ 572 (588)
T PRK11174 540 VTHQLED-L-AQWDQIWVMQDGQIVQQGDYAELSQ 572 (588)
T ss_pred EecChHH-H-HhCCEEEEEeCCeEeecCCHHHHHh
Confidence 9999953 4 6699999999999999999887753
No 185
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.85 E-value=2.7e-21 Score=165.51 Aligned_cols=150 Identities=14% Similarity=0.123 Sum_probs=116.1
Q ss_pred Cchhhhh-cCCCC---C-CceeEEEECCeecCc--hhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHH
Q psy8953 1 MSIELNV-QSIRL---T-GSSGKILVNGQERKS--ACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQE 73 (286)
Q Consensus 1 ~stll~~-~g~~~---~-~~~G~i~~~g~~~~~--~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~ 73 (286)
|||||++ +|... . ..+|+|.++|+++.. .....+++.+|||+|++.+++ .||+|++.|+...+. ..+.++
T Consensus 45 KSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~ 121 (253)
T PRK14242 45 KSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNG--VKDKAY 121 (253)
T ss_pred HHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcC--CCCHHH
Confidence 8999999 99742 1 369999999998753 112345678999999998887 599999999876421 112223
Q ss_pred HHHHHh-------h--------h-hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCE
Q psy8953 74 KKDQVS-------L--------E-LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRT 118 (286)
Q Consensus 74 ~~~~v~-------l--------~-~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~t 118 (286)
..+++. + . ....+|||||| ||++||+.++..+.++|+++.+ +.|
T Consensus 122 ~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~t 200 (253)
T PRK14242 122 LAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA-RYT 200 (253)
T ss_pred HHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCe
Confidence 233322 2 1 23568899999 9999999999999999999965 789
Q ss_pred EEEEEcCCCHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 119 VVATIHTPSALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 119 ii~~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
||+++|+++. +..++|++++|++|+++..|+++++.
T Consensus 201 vii~tH~~~~-~~~~~d~v~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14242 201 IIIVTHNMQQ-AARVSDVTAFFYMGKLIEVGPTEQIF 236 (253)
T ss_pred EEEEEecHHH-HHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999864 66889999999999999999877653
No 186
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=3.1e-21 Score=165.13 Aligned_cols=141 Identities=18% Similarity=0.189 Sum_probs=112.9
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
|||||++ +|+.+. .+|+|.++|+++.. ....+|||+|++.+++.+||.|++.|..... ..+.++..+++.
T Consensus 40 KSTLl~~l~Gl~~p-~~G~i~~~g~~~~~-----~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~ 110 (255)
T PRK11248 40 KTTLLNLIAGFVPY-QHGSITLDGKPVEG-----PGAERGVVFQNEGLLPWRNVQDNVAFGLQLA---GVEKMQRLEIAH 110 (255)
T ss_pred HHHHHHHHhCCCCC-CCcEEEECCEECCC-----CCCcEEEEeCCCccCCCCcHHHHHHhHHHHc---CCCHHHHHHHHH
Confidence 8999999 997543 68999999998753 2345899999999999999999999986532 223333333332
Q ss_pred -------hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHh-CCCEEEEEEcCCC
Q psy8953 80 -------LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAK-QGRTVVATIHTPS 127 (286)
Q Consensus 80 -------l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~-~g~tii~~~h~~~ 127 (286)
+. ....+||||+| ||++||+.++..+.++|+++++ .|.|||+++|+++
T Consensus 111 ~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~ 190 (255)
T PRK11248 111 QMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIE 190 (255)
T ss_pred HHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 22 34668999999 9999999999999999999965 5999999999986
Q ss_pred HHHHHHhhhHhhhc--CCeeecccCh
Q psy8953 128 ALLFEKFDSLYALA--KGHCIYRGSI 151 (286)
Q Consensus 128 ~~~~~~~d~v~~l~--~G~i~~~g~~ 151 (286)
.+..++|++++|+ +|+++..++.
T Consensus 191 -~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 191 -EAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred -HHHHhCCEEEEEeCCCcEEEEEecC
Confidence 4668899999998 5999987653
No 187
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.85 E-value=2.6e-21 Score=164.60 Aligned_cols=152 Identities=20% Similarity=0.221 Sum_probs=117.0
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhc-ccceeeEEecCcccCCCCCHHHHHHHHHhcCCC-----CCCCHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQ-FLKLSCYIQQDDALRPKLTVTEAMMIASHLKLG-----FKVSTQE 73 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~-~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~-----~~~~~~~ 73 (286)
|||||++ +|..+. .+|+|.++|+++...+... .++.++|++|++.+++.+||+|++.|+...... .....++
T Consensus 41 KSTLl~~l~G~~~p-~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~ 119 (242)
T TIGR03411 41 KTTMMDVITGKTRP-DEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAE 119 (242)
T ss_pred HHHHHHHHhCCCCC-CCCeEEECCeecCCCCHHHHHhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHH
Confidence 8999999 997543 6899999999875432222 245799999999999999999999997542100 0011222
Q ss_pred HHHHHh-------hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEE
Q psy8953 74 KKDQVS-------LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVAT 122 (286)
Q Consensus 74 ~~~~v~-------l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~ 122 (286)
..+++. +. ....+||||+| ||++||+.++..++++|+++++ ++|||++
T Consensus 120 ~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~ 198 (242)
T TIGR03411 120 EKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVV 198 (242)
T ss_pred HHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEE
Confidence 222222 22 34568899999 9999999999999999999977 6899999
Q ss_pred EcCCCHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 123 IHTPSALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 123 ~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
+|+++ .+..++|++++|++|++++.|+++++.
T Consensus 199 sH~~~-~~~~~~d~i~~l~~g~~~~~~~~~~~~ 230 (242)
T TIGR03411 199 EHDME-FVRSIADKVTVLHQGSVLAEGSLDQVQ 230 (242)
T ss_pred ECCHH-HHHHhCCEEEEEECCeEEeeCCHHHHh
Confidence 99986 466889999999999999999877653
No 188
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.85 E-value=2.6e-21 Score=200.03 Aligned_cols=152 Identities=21% Similarity=0.264 Sum_probs=126.9
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
||||+++ +|.... .+|+|+++|+++.. .....++.+|||+|++.+++.+||+|++.|.++++ +.+.++++++++
T Consensus 1978 KTTLlkmL~Gll~p-tsG~I~i~G~~i~~-~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~---g~~~~~~~~~v~ 2052 (2272)
T TIGR01257 1978 KTTTFKMLTGDTTV-TSGDATVAGKSILT-NISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLR---GVPAEEIEKVAN 2052 (2272)
T ss_pred HHHHHHHHhCCCCC-CccEEEECCEECcc-hHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhc---CCCHHHHHHHHH
Confidence 8999999 997544 68999999999853 22445678999999999999999999999988763 234455444443
Q ss_pred -------hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcCCCH
Q psy8953 80 -------LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVATIHTPSA 128 (286)
Q Consensus 80 -------l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~~~~ 128 (286)
|. ...++|||||| ||+||||.+++.++++|++++++|+|||+++|+++
T Consensus 2053 ~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~me- 2131 (2272)
T TIGR01257 2053 WSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSME- 2131 (2272)
T ss_pred HHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-
Confidence 22 34668999999 99999999999999999999888999999999996
Q ss_pred HHHHHhhhHhhhcCCeeecccChhcHHHHH
Q psy8953 129 LLFEKFDSLYALAKGHCIYRGSISRLVPHL 158 (286)
Q Consensus 129 ~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 158 (286)
++..+|||+++|.+|++++.|+++++...+
T Consensus 2132 e~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~~ 2161 (2272)
T TIGR01257 2132 ECEALCTRLAIMVKGAFQCLGTIQHLKSKF 2161 (2272)
T ss_pred HHHHhCCEEEEEECCEEEEECCHHHHHHHh
Confidence 467889999999999999999999886543
No 189
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=3.2e-21 Score=164.87 Aligned_cols=150 Identities=15% Similarity=0.130 Sum_probs=117.0
Q ss_pred Cchhhhh-cCCCCC----CceeEEEECCeecCch--hhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHH
Q psy8953 1 MSIELNV-QSIRLT----GSSGKILVNGQERKSA--CIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQE 73 (286)
Q Consensus 1 ~stll~~-~g~~~~----~~~G~i~~~g~~~~~~--~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~ 73 (286)
|||||++ +|..+. ..+|+|.++|+++... .....++.+|||+|++.+++ .||+|++.|..+.... ...++
T Consensus 43 KSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~--~~~~~ 119 (251)
T PRK14270 43 KSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHGI--KDKKE 119 (251)
T ss_pred HHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcCC--CcHHH
Confidence 8999999 997532 3689999999988531 11234678999999998887 8999999998763210 12223
Q ss_pred HHHHHh-------h--------h-hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCE
Q psy8953 74 KKDQVS-------L--------E-LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRT 118 (286)
Q Consensus 74 ~~~~v~-------l--------~-~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~t 118 (286)
..+++. + . ....+||||+| ||++||+.++..+.++|+++.+ +.|
T Consensus 120 ~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~t 198 (251)
T PRK14270 120 LDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYT 198 (251)
T ss_pred HHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCe
Confidence 222222 1 1 33568899999 9999999999999999999977 589
Q ss_pred EEEEEcCCCHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 119 VVATIHTPSALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 119 ii~~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
||+++|+++ .+..++||+++|++|++++.|+++++.
T Consensus 199 iiivsH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14270 199 IVIVTHNMQ-QASRVSDYTAFFLMGDLIEFNKTEKIF 234 (251)
T ss_pred EEEEEcCHH-HHHHhcCEEEEEECCeEEEeCCHHHHh
Confidence 999999986 466889999999999999999988764
No 190
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.85 E-value=3.6e-21 Score=163.12 Aligned_cols=148 Identities=22% Similarity=0.248 Sum_probs=118.7
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
||||+++ +|..+. .+|+|.++|.++... ...++.++||+|++.+++.+|+.|++.|..+.. .....+..+++.
T Consensus 39 KSTLl~~i~G~~~~-~~G~i~i~g~~~~~~--~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~---~~~~~~~~~~~~ 112 (237)
T TIGR00968 39 KSTLLRIIAGLEQP-DSGRIRLNGQDATRV--HARDRKIGFVFQHYALFKHLTVRDNIAFGLEIR---KHPKAKIKARVE 112 (237)
T ss_pred HHHHHHHHhcCCCC-CceEEEECCEEcCcC--ChhhcCEEEEecChhhccCCcHHHHHHhHHHhc---CCCHHHHHHHHH
Confidence 8999999 997543 789999999987642 223578999999999999999999999887632 112222222222
Q ss_pred -------hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC-CCEEEEEEcCCC
Q psy8953 80 -------LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ-GRTVVATIHTPS 127 (286)
Q Consensus 80 -------l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~-g~tii~~~h~~~ 127 (286)
+. ....+||||+| ||++||+.++..+.++|++++++ |+|||+++|+++
T Consensus 113 ~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~ 192 (237)
T TIGR00968 113 ELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQE 192 (237)
T ss_pred HHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 21 33568899999 99999999999999999999886 899999999986
Q ss_pred HHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 128 ALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 128 ~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
.+..++|++++|++|++++.|+.+++.
T Consensus 193 -~~~~~~d~i~~l~~g~i~~~~~~~~~~ 219 (237)
T TIGR00968 193 -EAMEVADRIVVMSNGKIEQIGSPDEVY 219 (237)
T ss_pred -HHHhhcCEEEEEECCEEEEecCHHHHH
Confidence 466889999999999999999877664
No 191
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.85 E-value=1.2e-21 Score=155.37 Aligned_cols=153 Identities=18% Similarity=0.277 Sum_probs=127.8
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcc-cceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQF-LKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQV 78 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~-~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v 78 (286)
|||-..+ .|+... -+|.|++||.+++..++... +.-+||.+|++..|-.+||+|+|+-.+|.+-.. ....+.+.++
T Consensus 43 KTT~Fymi~Glv~~-d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~d-~~~~~~~~~l 120 (243)
T COG1137 43 KTTTFYMIVGLVRP-DSGKILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKD-LKKAERKEEL 120 (243)
T ss_pred ceeEEEEEEEEEec-CCceEEECCcccccCChHHHhhcCcccccccchHhhcCcHHHHHHHHHhhhhcc-hhHHHHHHHH
Confidence 6788888 887654 68999999999988766555 458999999999999999999999999975421 1223444444
Q ss_pred h-------hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcCCC
Q psy8953 79 S-------LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVATIHTPS 127 (286)
Q Consensus 79 ~-------l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~~~ 127 (286)
+ +. ...++|||||+ |.+|.||.+..++-++++.|+..|+.|+++-|+..
T Consensus 121 ~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVR 200 (243)
T COG1137 121 DALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVR 200 (243)
T ss_pred HHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHH
Confidence 3 22 33468899999 99999999999999999999999999999999998
Q ss_pred HHHHHHhhhHhhhcCCeeecccChhcHHH
Q psy8953 128 ALLFEKFDSLYALAKGHCIYRGSISRLVP 156 (286)
Q Consensus 128 ~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 156 (286)
+ ..+.+||..++.+|++++.|+|+++..
T Consensus 201 E-tL~i~dRaYIi~~G~vla~G~p~ei~~ 228 (243)
T COG1137 201 E-TLDICDRAYIISDGKVLAEGSPEEIVN 228 (243)
T ss_pred H-HHhhhheEEEEecCeEEecCCHHHHhc
Confidence 6 559999999999999999999999864
No 192
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.85 E-value=4.1e-21 Score=162.10 Aligned_cols=149 Identities=15% Similarity=0.194 Sum_probs=116.7
Q ss_pred Cchhhhh-cCCCCCC---ceeEEEECCeecCchhhhcccceeeEEecCcc--cCCCCCHHHHHHHHHhcCCCCCCCHHHH
Q psy8953 1 MSIELNV-QSIRLTG---SSGKILVNGQERKSACIEQFLKLSCYIQQDDA--LRPKLTVTEAMMIASHLKLGFKVSTQEK 74 (286)
Q Consensus 1 ~stll~~-~g~~~~~---~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~--~~~~~tV~e~l~f~~~~~~~~~~~~~~~ 74 (286)
||||+++ +|..+.. .+|+|+++|+++... ...++.+|||+|++. +.+.+||+|++.|..+... ...++.
T Consensus 25 KSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~--~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~---~~~~~~ 99 (230)
T TIGR02770 25 KSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL--SIRGRHIATIMQNPRTAFNPLFTMGNHAIETLRSLG---KLSKQA 99 (230)
T ss_pred HHHHHHHHhcCCCCccCccccEEEECCEechhh--hhhhheeEEEecCchhhcCcccCHHHHHHHHHHHcC---ccHHHH
Confidence 8999999 9976542 799999999987542 222368999999985 4578999999998775311 112222
Q ss_pred HHHHh-------hh--------hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC-CCEE
Q psy8953 75 KDQVS-------LE--------LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ-GRTV 119 (286)
Q Consensus 75 ~~~v~-------l~--------~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~-g~ti 119 (286)
.+++. +. ....+|||||| ||++||+.++..+.+.|++++++ |.||
T Consensus 100 ~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~ti 179 (230)
T TIGR02770 100 RALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGI 179 (230)
T ss_pred HHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhcCCEE
Confidence 22222 21 23458899999 99999999999999999999875 8999
Q ss_pred EEEEcCCCHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 120 VATIHTPSALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 120 i~~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
|+++|+++ .+...+|++++|++|+++..|+++++.
T Consensus 180 ii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 214 (230)
T TIGR02770 180 LLITHDLG-VVARIADEVAVMDDGRIVERGTVKEIF 214 (230)
T ss_pred EEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999987 466789999999999999999887764
No 193
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.85 E-value=1.3e-21 Score=186.64 Aligned_cols=146 Identities=19% Similarity=0.287 Sum_probs=123.2
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
||||+++ +|+... .+|+|++||.++...+...+++.+|||+||+.+| +-|++|+++++.- ..+.||+.+-+.
T Consensus 512 KSTL~KLL~gly~p-~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf-~gSI~eNi~l~~p-----~~~~e~i~~A~~ 584 (709)
T COG2274 512 KSTLLKLLLGLYKP-QQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLF-SGSIRENIALGNP-----EATDEEIIEAAQ 584 (709)
T ss_pred HHHHHHHHhcCCCC-CCceEEECCEeHHhcCHHHHHhheeEEcccchhh-cCcHHHHHhcCCC-----CCCHHHHHHHHH
Confidence 8999999 996544 7999999999999888899999999999998665 5689999999884 234566655433
Q ss_pred ------------------hh-hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEE
Q psy8953 80 ------------------LE-LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVA 121 (286)
Q Consensus 80 ------------------l~-~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~ 121 (286)
+. ....+|||||| |||+||+.+...+.+.|+++.. |+|+|+
T Consensus 585 ~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~-~~T~I~ 663 (709)
T COG2274 585 LAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQ-GRTVII 663 (709)
T ss_pred HhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhc-CCeEEE
Confidence 11 23458899999 9999999999999999999977 689999
Q ss_pred EEcCCCHHHHHHhhhHhhhcCCeeecccChhcHHH
Q psy8953 122 TIHTPSALLFEKFDSLYALAKGHCIYRGSISRLVP 156 (286)
Q Consensus 122 ~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 156 (286)
+.||++ ....+||++||++|+|+.+|+.+++..
T Consensus 664 IaHRl~--ti~~adrIiVl~~Gkiv~~gs~~ell~ 696 (709)
T COG2274 664 IAHRLS--TIRSADRIIVLDQGKIVEQGSHEELLA 696 (709)
T ss_pred EEccch--HhhhccEEEEccCCceeccCCHHHHHH
Confidence 999986 347799999999999999999998875
No 194
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.85 E-value=5e-21 Score=164.33 Aligned_cols=151 Identities=13% Similarity=0.149 Sum_probs=118.0
Q ss_pred Cchhhhh-cCCCCC----CceeEEEECCeecCc--hhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHH
Q psy8953 1 MSIELNV-QSIRLT----GSSGKILVNGQERKS--ACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQE 73 (286)
Q Consensus 1 ~stll~~-~g~~~~----~~~G~i~~~g~~~~~--~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~ 73 (286)
|||||++ +|+... ..+|+|.++|+++.. .....+++.+|||+|++.+++.+||.|++.|+...+. ..+.++
T Consensus 43 KSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~ 120 (258)
T PRK14241 43 KSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNG--VRNKKD 120 (258)
T ss_pred HHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcC--CCCHHH
Confidence 8999999 997542 269999999998742 1123456789999999999999999999999876421 112333
Q ss_pred HHHHHh-------h--------h-hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCE
Q psy8953 74 KKDQVS-------L--------E-LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRT 118 (286)
Q Consensus 74 ~~~~v~-------l--------~-~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~t 118 (286)
.++++. + . ....+||||+| ||++||+.++..+.++|+++++ +.|
T Consensus 121 ~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~t 199 (258)
T PRK14241 121 LDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ-DYT 199 (258)
T ss_pred HHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCE
Confidence 333322 2 1 33568999999 9999999999999999999965 689
Q ss_pred EEEEEcCCCHHHHHHhhhHhhhc------CCeeecccChhcHH
Q psy8953 119 VVATIHTPSALLFEKFDSLYALA------KGHCIYRGSISRLV 155 (286)
Q Consensus 119 ii~~~h~~~~~~~~~~d~v~~l~------~G~i~~~g~~~~~~ 155 (286)
||+++|+++. +..++|++++|+ +|++++.|+++++.
T Consensus 200 viivsH~~~~-~~~~~d~i~~l~~~~~~~~g~i~~~~~~~~~~ 241 (258)
T PRK14241 200 IVIVTHNMQQ-AARVSDQTAFFNLEATGKPGRLVEIDDTEKIF 241 (258)
T ss_pred EEEEecCHHH-HHHhCCEEEEEecccCCCCceEEecCCHHHHH
Confidence 9999999864 668899999996 79999999887764
No 195
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.85 E-value=4.1e-21 Score=165.00 Aligned_cols=150 Identities=19% Similarity=0.186 Sum_probs=117.7
Q ss_pred Cchhhhh-cCCCC--C--CceeEEEECCeecCc--hhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHH
Q psy8953 1 MSIELNV-QSIRL--T--GSSGKILVNGQERKS--ACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQE 73 (286)
Q Consensus 1 ~stll~~-~g~~~--~--~~~G~i~~~g~~~~~--~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~ 73 (286)
||||+++ +|... . ..+|+|.++|+++.. .+...+++.++||+|++.+++ .||+|++.|..+... ..+.++
T Consensus 52 KSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~ 128 (260)
T PRK10744 52 KSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFE--KLSRAE 128 (260)
T ss_pred HHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcC--CCCHHH
Confidence 8999999 99753 2 368999999998742 122345678999999998777 899999999875311 123444
Q ss_pred HHHHHh-------h--------h-hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCE
Q psy8953 74 KKDQVS-------L--------E-LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRT 118 (286)
Q Consensus 74 ~~~~v~-------l--------~-~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~t 118 (286)
..+++. + . ....+||||+| ||++||+.++..+++.|+++++ +.|
T Consensus 129 ~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~t 207 (260)
T PRK10744 129 MDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQ-DYT 207 (260)
T ss_pred HHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCe
Confidence 333332 1 1 23568899999 9999999999999999999964 789
Q ss_pred EEEEEcCCCHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 119 VVATIHTPSALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 119 ii~~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
||+++|+++. +..++|++++|++|+++..|+++++.
T Consensus 208 iii~sH~~~~-~~~~~d~i~~l~~G~i~~~g~~~~~~ 243 (260)
T PRK10744 208 VVIVTHNMQQ-AARCSDYTAFMYLGELIEFGNTDTIF 243 (260)
T ss_pred EEEEeCCHHH-HHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999864 66889999999999999999877664
No 196
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.85 E-value=4.9e-21 Score=161.39 Aligned_cols=141 Identities=21% Similarity=0.265 Sum_probs=111.0
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhc---c-cceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQ---F-LKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKK 75 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~---~-~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~ 75 (286)
||||+++ +|..+. .+|+|.++|+++...+... . ++.++||+|++.+++.+||.|++.|....+ ..+.++..
T Consensus 49 KSTLl~~i~Gl~~p-~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~---~~~~~~~~ 124 (228)
T PRK10584 49 KSTLLAILAGLDDG-SSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLR---GESSRQSR 124 (228)
T ss_pred HHHHHHHHHcCCCC-CCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhc---CCCHHHHH
Confidence 8999999 997543 6899999999875432221 1 357999999999999999999999976432 12233333
Q ss_pred HHHh-------h----h-hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC-CCEEEEEE
Q psy8953 76 DQVS-------L----E-LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ-GRTVVATI 123 (286)
Q Consensus 76 ~~v~-------l----~-~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~-g~tii~~~ 123 (286)
+++. + . ....+||||+| ||++||+.++..++++|++++.+ |.|||+++
T Consensus 125 ~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~s 204 (228)
T PRK10584 125 NGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVT 204 (228)
T ss_pred HHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 3333 2 1 44668999999 99999999999999999999775 89999999
Q ss_pred cCCCHHHHHHhhhHhhhcCCeeec
Q psy8953 124 HTPSALLFEKFDSLYALAKGHCIY 147 (286)
Q Consensus 124 h~~~~~~~~~~d~v~~l~~G~i~~ 147 (286)
|+++. + ..+|++++|++|+++.
T Consensus 205 H~~~~-~-~~~d~i~~l~~g~i~~ 226 (228)
T PRK10584 205 HDLQL-A-ARCDRRLRLVNGQLQE 226 (228)
T ss_pred cCHHH-H-HhCCEEEEEECCEEEe
Confidence 99864 5 5599999999999874
No 197
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.84 E-value=5.3e-21 Score=163.43 Aligned_cols=150 Identities=17% Similarity=0.153 Sum_probs=116.1
Q ss_pred Cchhhhh-cCCCC--C--CceeEEEECCeecCc--hhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHH
Q psy8953 1 MSIELNV-QSIRL--T--GSSGKILVNGQERKS--ACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQE 73 (286)
Q Consensus 1 ~stll~~-~g~~~--~--~~~G~i~~~g~~~~~--~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~ 73 (286)
|||||++ +|..+ . ..+|+|+++|+++.. .+...+++.++||+|++.+++ .||.|++.|+.+.... .+.++
T Consensus 42 KSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~~--~~~~~ 118 (250)
T PRK14240 42 KSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHGI--KDKKK 118 (250)
T ss_pred HHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCccCc-ccHHHHHHHHHHhcCC--CCHHH
Confidence 8999999 99643 2 158999999998753 122345678999999998877 8999999998753211 12222
Q ss_pred HHHHHh-------h--------h-hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCE
Q psy8953 74 KKDQVS-------L--------E-LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRT 118 (286)
Q Consensus 74 ~~~~v~-------l--------~-~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~t 118 (286)
.++++. + . ...++||||+| ||++||+.++..+.++|+++++ +.|
T Consensus 119 ~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~t 197 (250)
T PRK14240 119 LDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKK-DYT 197 (250)
T ss_pred HHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCe
Confidence 222222 1 1 33568999999 9999999999999999999965 789
Q ss_pred EEEEEcCCCHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 119 VVATIHTPSALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 119 ii~~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
||+++|+++ .+...+|++++|++|+++..|+++++.
T Consensus 198 iii~sH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~~ 233 (250)
T PRK14240 198 IVIVTHNMQ-QASRISDKTAFFLNGEIVEFGDTVDLF 233 (250)
T ss_pred EEEEEeCHH-HHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999986 466889999999999999999877654
No 198
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=5.2e-21 Score=163.45 Aligned_cols=150 Identities=15% Similarity=0.135 Sum_probs=115.9
Q ss_pred Cchhhhh-cCCC---CC-CceeEEEECCeecCch--hhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHH
Q psy8953 1 MSIELNV-QSIR---LT-GSSGKILVNGQERKSA--CIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQE 73 (286)
Q Consensus 1 ~stll~~-~g~~---~~-~~~G~i~~~g~~~~~~--~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~ 73 (286)
||||+++ +|.. +. ..+|+|.++|+++... +...+++.++||+|++.+++ .||.|++.|+.+.+.. ...++
T Consensus 42 KSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~~--~~~~~ 118 (250)
T PRK14245 42 KSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNGV--KDNAF 118 (250)
T ss_pred HHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHhhheEEEecCCccCc-ccHHHHHHHHHHHcCC--CcHHH
Confidence 8999999 9962 22 2589999999987542 12345678999999998776 5999999998764211 11222
Q ss_pred HHHHHh-------h--------h-hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCE
Q psy8953 74 KKDQVS-------L--------E-LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRT 118 (286)
Q Consensus 74 ~~~~v~-------l--------~-~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~t 118 (286)
..+++. + . ....+||||+| ||++||+.++..+++.|+++.+ ++|
T Consensus 119 ~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~t 197 (250)
T PRK14245 119 IRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKK-DYT 197 (250)
T ss_pred HHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCe
Confidence 222222 1 1 23468899999 9999999999999999999954 799
Q ss_pred EEEEEcCCCHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 119 VVATIHTPSALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 119 ii~~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
||+++|+++. +..++|++++|++|++++.|+++++.
T Consensus 198 iiivtH~~~~-~~~~~d~v~~l~~G~~~~~~~~~~~~ 233 (250)
T PRK14245 198 IVIVTHNMQQ-AARVSDKTAFFYMGEMVEYDDTKKIF 233 (250)
T ss_pred EEEEeCCHHH-HHhhCCEEEEEECCEEEEECCHHHHh
Confidence 9999999864 66889999999999999999988775
No 199
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=5e-21 Score=163.47 Aligned_cols=150 Identities=13% Similarity=0.113 Sum_probs=116.4
Q ss_pred Cchhhhh-cCCCCC----CceeEEEECCeecCc-hhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHH
Q psy8953 1 MSIELNV-QSIRLT----GSSGKILVNGQERKS-ACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEK 74 (286)
Q Consensus 1 ~stll~~-~g~~~~----~~~G~i~~~g~~~~~-~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~ 74 (286)
||||+++ +|..+. ..+|+|.++|.++.. .+...+++.++||+|++.+++ .||.|++.|+..... ..+.++.
T Consensus 42 KSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~--~~~~~~~ 118 (249)
T PRK14253 42 KSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQG--IKDKKVL 118 (249)
T ss_pred HHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEecCCCcCc-ccHHHHHHhHHHhcC--CCchHHH
Confidence 8999999 997543 368999999998742 223455678999999998887 899999998865311 1122222
Q ss_pred HHHHh-------h--------h-hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEE
Q psy8953 75 KDQVS-------L--------E-LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTV 119 (286)
Q Consensus 75 ~~~v~-------l--------~-~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~ti 119 (286)
.+++. + . ....+||||+| ||++||+.++..++++|+++++ +.||
T Consensus 119 ~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~ti 197 (249)
T PRK14253 119 DEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK-NYTI 197 (249)
T ss_pred HHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeE
Confidence 22222 1 1 23468899999 9999999999999999999976 5899
Q ss_pred EEEEcCCCHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 120 VATIHTPSALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 120 i~~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
|+++|+++ .+..++|++++|++|+++..|+++++.
T Consensus 198 i~~sh~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (249)
T PRK14253 198 VIVTHSMQ-QARRISDRTAFFLMGELVEHDDTQVIF 232 (249)
T ss_pred EEEecCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999986 467889999999999999999876653
No 200
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.84 E-value=5e-21 Score=182.99 Aligned_cols=151 Identities=19% Similarity=0.233 Sum_probs=120.7
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchh---hhcccceeeEEecCc--ccCCCCCHHHHHHHHHhcCCCCCCCHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSAC---IEQFLKLSCYIQQDD--ALRPKLTVTEAMMIASHLKLGFKVSTQEK 74 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~---~~~~~~~~g~v~Q~~--~~~~~~tV~e~l~f~~~~~~~~~~~~~~~ 74 (286)
||||+++ +|+.+. .+|+|.++|+++...+ ...+++.+|||+|++ .+++.+||.|++++....+. ..+.++.
T Consensus 363 KSTLlk~i~Gl~~p-~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~--~~~~~~~ 439 (623)
T PRK10261 363 KSTTGRALLRLVES-QGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHG--LLPGKAA 439 (623)
T ss_pred HHHHHHHHHcCCCC-CCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcC--CCCHHHH
Confidence 8999999 997643 6899999999875421 123467899999998 47899999999999875321 1123333
Q ss_pred HHHHh-------h-----h-hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC-CCEEEE
Q psy8953 75 KDQVS-------L-----E-LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ-GRTVVA 121 (286)
Q Consensus 75 ~~~v~-------l-----~-~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~-g~tii~ 121 (286)
++++. | . ..+.+|||||| ||++||+.++.+++++|++++++ |.|||+
T Consensus 440 ~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~ 519 (623)
T PRK10261 440 AARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLF 519 (623)
T ss_pred HHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 33332 3 1 45679999999 99999999999999999999875 999999
Q ss_pred EEcCCCHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 122 TIHTPSALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 122 ~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
++|+++ .+..++|++++|++|++++.|++++++
T Consensus 520 isHdl~-~v~~~~dri~vl~~G~iv~~g~~~~i~ 552 (623)
T PRK10261 520 ISHDMA-VVERISHRVAVMYLGQIVEIGPRRAVF 552 (623)
T ss_pred EeCCHH-HHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 999986 466889999999999999999988875
No 201
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.84 E-value=4.6e-21 Score=198.26 Aligned_cols=149 Identities=20% Similarity=0.233 Sum_probs=123.6
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
|||||++ +|..+. .+|+|.++|+++.. ....+++.+|||+|++.+++.+||+|++.|.++++. .+.++.+++++
T Consensus 969 KSTLLkiLaGLl~P-tsG~I~i~G~dI~~-~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg---~~~~~~~~~v~ 1043 (2272)
T TIGR01257 969 KTTTLSILTGLLPP-TSGTVLVGGKDIET-NLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKG---RSWEEAQLEME 1043 (2272)
T ss_pred HHHHHHHHhcCCCC-CceEEEECCEECcc-hHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcC---CCHHHHHHHHH
Confidence 8999999 997654 68999999999864 234567889999999999999999999999988642 23333333333
Q ss_pred -------hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcCCCH
Q psy8953 80 -------LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVATIHTPSA 128 (286)
Q Consensus 80 -------l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~~~~ 128 (286)
|. ...++|||||| ||+|||+.+++.++++|++++ +|+|||+++|+++
T Consensus 1044 ~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~g~TIIltTHdmd- 1121 (2272)
T TIGR01257 1044 AMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHMD- 1121 (2272)
T ss_pred HHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEECCHH-
Confidence 32 45678999999 999999999999999999995 5999999999986
Q ss_pred HHHHHhhhHhhhcCCeeecccChhcHHH
Q psy8953 129 LLFEKFDSLYALAKGHCIYRGSISRLVP 156 (286)
Q Consensus 129 ~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 156 (286)
++...+||+++|++|++++.|++..+..
T Consensus 1122 ea~~laDrI~iL~~GkL~~~Gs~~~Lk~ 1149 (2272)
T TIGR01257 1122 EADLLGDRIAIISQGRLYCSGTPLFLKN 1149 (2272)
T ss_pred HHHHhCCEEEEEECCEEEEecCHHHHHH
Confidence 4667899999999999999999987753
No 202
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.84 E-value=4.7e-21 Score=180.42 Aligned_cols=151 Identities=19% Similarity=0.215 Sum_probs=118.4
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhh---hcccceeeEEecCcc--cCCCCCHHHHHHHHHhcCCCCCCCHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACI---EQFLKLSCYIQQDDA--LRPKLTVTEAMMIASHLKLGFKVSTQEK 74 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~---~~~~~~~g~v~Q~~~--~~~~~tV~e~l~f~~~~~~~~~~~~~~~ 74 (286)
||||+++ +|+.+ .+|+|+++|+++...+. ..+++.+|||+|++. +++.+||.|+++|++..... ..+..+.
T Consensus 325 KSTLlk~l~Gl~~--~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~-~~~~~~~ 401 (529)
T PRK15134 325 KSTTGLALLRLIN--SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQP-TLSAAQR 401 (529)
T ss_pred HHHHHHHHhCcCC--CCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccc-cCChHHH
Confidence 8999999 99875 68999999998754221 123567999999973 78899999999998653211 1223332
Q ss_pred HHHHh-------hh------hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC-CCEEEE
Q psy8953 75 KDQVS-------LE------LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ-GRTVVA 121 (286)
Q Consensus 75 ~~~v~-------l~------~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~-g~tii~ 121 (286)
++++. +. ...++|||||| ||++||+.++..++++|++++++ |.|||+
T Consensus 402 ~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~ 481 (529)
T PRK15134 402 EQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLF 481 (529)
T ss_pred HHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEE
Confidence 22222 21 34578999999 99999999999999999999875 999999
Q ss_pred EEcCCCHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 122 TIHTPSALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 122 ~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
++|+++. +..++|++++|++|+++..|+++++.
T Consensus 482 vsHd~~~-~~~~~d~i~~l~~G~i~~~~~~~~~~ 514 (529)
T PRK15134 482 ISHDLHV-VRALCHQVIVLRQGEVVEQGDCERVF 514 (529)
T ss_pred EeCCHHH-HHHhcCeEEEEECCEEEEEcCHHHHh
Confidence 9999864 66889999999999999999877664
No 203
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=6.3e-21 Score=163.07 Aligned_cols=150 Identities=15% Similarity=0.122 Sum_probs=116.2
Q ss_pred Cchhhhh-cCCCCCC----ceeEEEECCeecCch--hhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHH
Q psy8953 1 MSIELNV-QSIRLTG----SSGKILVNGQERKSA--CIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQE 73 (286)
Q Consensus 1 ~stll~~-~g~~~~~----~~G~i~~~g~~~~~~--~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~ 73 (286)
|||||++ +|..+.. .+|+|.++|+++... ....+++.++||+|++.+++. ||+|++.|+...+. .. ..++
T Consensus 43 KSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~-~~-~~~~ 119 (251)
T PRK14249 43 KSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLG-TT-AQSR 119 (251)
T ss_pred HHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhceEEEEecCCccCcC-cHHHHHhhHHHhcC-CC-hhhH
Confidence 8999999 9975532 479999999987531 123457889999999988875 99999999876421 11 1222
Q ss_pred HHHHHh-------h--------h-hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCE
Q psy8953 74 KKDQVS-------L--------E-LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRT 118 (286)
Q Consensus 74 ~~~~v~-------l--------~-~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~t 118 (286)
..+++. + . ....+||||+| ||++||+.++..+.++|+++. ++.|
T Consensus 120 ~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~t 198 (251)
T PRK14249 120 LDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNYT 198 (251)
T ss_pred HHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCE
Confidence 222221 1 1 33558899999 999999999999999999995 5899
Q ss_pred EEEEEcCCCHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 119 VVATIHTPSALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 119 ii~~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
||+++|+++. +..++|++++|++|++++.|+++++.
T Consensus 199 ilivsh~~~~-~~~~~d~i~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14249 199 IAIVTHNMQQ-AARASDWTGFLLTGDLVEYGRTGEIF 234 (251)
T ss_pred EEEEeCCHHH-HHhhCCEEEEEeCCeEEEeCCHHHHH
Confidence 9999999864 56889999999999999999887664
No 204
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.84 E-value=5.4e-20 Score=170.30 Aligned_cols=134 Identities=19% Similarity=0.193 Sum_probs=93.7
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHh-c-C-----------CC
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASH-L-K-----------LG 66 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~-~-~-----------~~ 66 (286)
|||||++ +|.... .+|+|...+ .-.+||+.|++......||.+.+.=+.. + . ++
T Consensus 42 KSTLLkilaG~~~~-~~G~i~~~~-----------~~~v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~ 109 (530)
T COG0488 42 KSTLLKILAGELEP-DSGEVTRPK-----------GLRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLA 109 (530)
T ss_pred HHHHHHHHcCCCcC-CCCeEeecC-----------CceEEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcc
Confidence 8999999 996533 678876653 2469999999999999999998876542 1 0 00
Q ss_pred CC--CCHH------------HHHHHHh-----hh------hhhcccCCccc-------------------cCCCcchHHH
Q psy8953 67 FK--VSTQ------------EKKDQVS-----LE------LWNNFCKKKKK-------------------KKRGLDSSSC 102 (286)
Q Consensus 67 ~~--~~~~------------~~~~~v~-----l~------~~~~~~gG~kq-------------------ptsgLD~~~~ 102 (286)
.. ...+ +.+.++. |. ...++|||||. ||..||..+.
T Consensus 110 ~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i 189 (530)
T COG0488 110 DPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESI 189 (530)
T ss_pred cchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHH
Confidence 00 0000 0011222 21 22458899998 9999999999
Q ss_pred HHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHhhhHhhhcCCeee-cccC
Q psy8953 103 SQCVSLLANLAKQGRTVVATIHTPSALLFEKFDSLYALAKGHCI-YRGS 150 (286)
Q Consensus 103 ~~~~~~l~~l~~~g~tii~~~h~~~~~~~~~~d~v~~l~~G~i~-~~g~ 150 (286)
.-+-+.|++. .| |+|+|.|+- +.+-..|++|+-++.|++. |.|.
T Consensus 190 ~WLe~~L~~~--~g-tviiVSHDR-~FLd~V~t~I~~ld~g~l~~y~Gn 234 (530)
T COG0488 190 EWLEDYLKRY--PG-TVIVVSHDR-YFLDNVATHILELDRGKLTPYKGN 234 (530)
T ss_pred HHHHHHHHhC--CC-cEEEEeCCH-HHHHHHhhheEEecCCceeEecCC
Confidence 9888888733 46 999999995 4566779999999998665 5554
No 205
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.84 E-value=4.4e-21 Score=153.55 Aligned_cols=153 Identities=21% Similarity=0.258 Sum_probs=128.4
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHh-cCCCCCCCHHH-HHH-
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASH-LKLGFKVSTQE-KKD- 76 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~-~~~~~~~~~~~-~~~- 76 (286)
|||||.. +|.... -+|++.+||.+.+.++..++++.-+.++|+-.+-+-.||+|-+.++.. .+.+..-++++ +.+
T Consensus 40 KSTlLk~LsGel~p-~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ 118 (259)
T COG4559 40 KSTLLKALSGELSP-DSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQ 118 (259)
T ss_pred HHHHHHHhhCccCC-CCCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHH
Confidence 8999999 996543 689999999999999889999999999999988788899999999986 32222211222 222
Q ss_pred ---HHh---hh--hhhcccCCccc-------------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEEE
Q psy8953 77 ---QVS---LE--LWNNFCKKKKK-------------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVATI 123 (286)
Q Consensus 77 ---~v~---l~--~~~~~~gG~kq-------------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~ 123 (286)
+++ +. ...++||||+| |||.||...+..++++.++++++|-.|+++.
T Consensus 119 ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VL 198 (259)
T COG4559 119 ALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVL 198 (259)
T ss_pred HHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 222 33 45679999999 9999999999999999999999999999999
Q ss_pred cCCCHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 124 HTPSALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 124 h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
|+.. ....++|||++|.+||+++.|+|.++.
T Consensus 199 HDLN-LAA~YaDrivll~~Grv~a~g~p~~vl 229 (259)
T COG4559 199 HDLN-LAAQYADRIVLLHQGRVIASGSPQDVL 229 (259)
T ss_pred ccch-HHHHhhheeeeeeCCeEeecCCHHHhc
Confidence 9997 467899999999999999999999986
No 206
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=3.4e-21 Score=166.21 Aligned_cols=153 Identities=12% Similarity=0.079 Sum_probs=115.8
Q ss_pred Cchhhhh-cCCCCC----CceeEEEECCeecCc--hhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHH
Q psy8953 1 MSIELNV-QSIRLT----GSSGKILVNGQERKS--ACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQE 73 (286)
Q Consensus 1 ~stll~~-~g~~~~----~~~G~i~~~g~~~~~--~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~ 73 (286)
|||||++ +|..+. ..+|+|.++|+++.. .+...+++.+|||+|++.+++. ||+|++.|++..+.......++
T Consensus 52 KSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~ 130 (269)
T PRK14259 52 KSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPK-SIYENIAFGARINGYTGDMDEL 130 (269)
T ss_pred HHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEccCCccchh-hHHHHHhhhhhhcCCcHHHHHH
Confidence 8999999 997542 379999999998642 1123456789999999988874 9999999987642111101112
Q ss_pred HHHHHh---h--------h-hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEE
Q psy8953 74 KKDQVS---L--------E-LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVAT 122 (286)
Q Consensus 74 ~~~~v~---l--------~-~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~ 122 (286)
+.+.++ + . ....+|||||| ||++||+.++..++++|+++++ +.|||++
T Consensus 131 ~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiiiv 209 (269)
T PRK14259 131 VERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK-NFTIVIV 209 (269)
T ss_pred HHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEE
Confidence 222222 1 1 33568999999 9999999999999999999965 7899999
Q ss_pred EcCCCHHHHHHhhhHhhhcC-----------CeeecccChhcHHH
Q psy8953 123 IHTPSALLFEKFDSLYALAK-----------GHCIYRGSISRLVP 156 (286)
Q Consensus 123 ~h~~~~~~~~~~d~v~~l~~-----------G~i~~~g~~~~~~~ 156 (286)
+|+++ .+...+|++++|++ |+++..|+++++..
T Consensus 210 tH~~~-~~~~~~d~i~~l~~~~~~~~~~g~~g~~~~~~~~~~~~~ 253 (269)
T PRK14259 210 THNMQ-QAVRVSDMTAFFNAEEVEGGSGGKVGYLVEFNETKKIFN 253 (269)
T ss_pred eCCHH-HHHHhcCEEEEEeccccccccccccceEEEeCCHHHHHh
Confidence 99986 46688999999996 67899999887754
No 207
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.84 E-value=7.1e-21 Score=185.89 Aligned_cols=106 Identities=18% Similarity=0.276 Sum_probs=83.3
Q ss_pred CCCCCHHHHHHHHHhcCCCCCCC------HHHHHHHHh------h-----h-hhhcccCCccc-----------------
Q psy8953 48 RPKLTVTEAMMIASHLKLGFKVS------TQEKKDQVS------L-----E-LWNNFCKKKKK----------------- 92 (286)
Q Consensus 48 ~~~~tV~e~l~f~~~~~~~~~~~------~~~~~~~v~------l-----~-~~~~~~gG~kq----------------- 92 (286)
+..+||.|.+.|..++.++.... ..++.+|++ | . ...+|||||+|
T Consensus 432 ~~~~~v~~~~~~~~~l~~~~~~~~ia~~i~~~i~~rl~~L~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~ll 511 (924)
T TIGR00630 432 VSELSIREAHEFFNQLDLTPEEKKIAEEILKEIKERLGFLIDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLY 511 (924)
T ss_pred HhcCCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhHhhccccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEE
Confidence 46789999999988764431000 123344443 2 1 35678999999
Q ss_pred ----cCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHhhhHhhh------cCCeeecccChhcHH
Q psy8953 93 ----KKRGLDSSSCSQCVSLLANLAKQGRTVVATIHTPSALLFEKFDSLYAL------AKGHCIYRGSISRLV 155 (286)
Q Consensus 93 ----ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~~~~~~~~~~d~v~~l------~~G~i~~~g~~~~~~ 155 (286)
||+|||+.++..++++|++|.+.|.|||+++|+++. + ..+|++++| ++|+|++.|+++++.
T Consensus 512 ILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~~-i-~~aD~vi~LgpgaG~~~G~Iv~~g~~~el~ 582 (924)
T TIGR00630 512 VLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEET-I-RAADYVIDIGPGAGIHGGEVVASGTPEEIL 582 (924)
T ss_pred EEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHH-H-hhCCEEEEecccccCCCCEEeeccCHHHHh
Confidence 899999999999999999998889999999999864 4 589999999 899999999988764
No 208
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.84 E-value=2.6e-21 Score=164.02 Aligned_cols=146 Identities=18% Similarity=0.266 Sum_probs=114.2
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
|||||++ +|..+. .+|+|++||.++...+...+++.+|||+|++.++ ..||+|++.|.... ...+++.+..+
T Consensus 41 KSTLl~~l~Gl~~~-~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~-~~tv~~nl~~~~~~-----~~~~~~~~~~~ 113 (237)
T cd03252 41 KSTLTKLIQRFYVP-ENGRVLVDGHDLALADPAWLRRQVGVVLQENVLF-NRSIRDNIALADPG-----MSMERVIEAAK 113 (237)
T ss_pred HHHHHHHHhcCcCC-CCCEEEECCeehHhcCHHHHhhcEEEEcCCchhc-cchHHHHhhccCCC-----CCHHHHHHHHH
Confidence 8999999 997643 6899999999875433345567899999998766 47999999885421 12222221111
Q ss_pred -------h-----------h-hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEE
Q psy8953 80 -------L-----------E-LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVA 121 (286)
Q Consensus 80 -------l-----------~-~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~ 121 (286)
+ . ....+|||||| ||++||+.++..+.+.|+++++ |.|||+
T Consensus 114 ~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii 192 (237)
T cd03252 114 LAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICA-GRTVII 192 (237)
T ss_pred HcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEE
Confidence 1 1 34678999999 9999999999999999999975 899999
Q ss_pred EEcCCCHHHHHHhhhHhhhcCCeeecccChhcHHH
Q psy8953 122 TIHTPSALLFEKFDSLYALAKGHCIYRGSISRLVP 156 (286)
Q Consensus 122 ~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 156 (286)
++|+++. + ..+|++++|++|++++.|+++++..
T Consensus 193 ~sH~~~~-~-~~~d~v~~l~~G~i~~~~~~~~~~~ 225 (237)
T cd03252 193 IAHRLST-V-KNADRIIVMEKGRIVEQGSHDELLA 225 (237)
T ss_pred EeCCHHH-H-HhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999975 4 4699999999999999999877653
No 209
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.84 E-value=9.8e-21 Score=161.98 Aligned_cols=150 Identities=16% Similarity=0.114 Sum_probs=115.5
Q ss_pred Cchhhhh-cCCCC--CC--ceeEEEECCeecCch--hhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHH
Q psy8953 1 MSIELNV-QSIRL--TG--SSGKILVNGQERKSA--CIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQE 73 (286)
Q Consensus 1 ~stll~~-~g~~~--~~--~~G~i~~~g~~~~~~--~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~ 73 (286)
||||+++ +|..+ .. .+|+|+++|+++... ....+++.++||+|++.+++ .||.|++.|+.+... . ...++
T Consensus 44 KSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~-~-~~~~~ 120 (252)
T PRK14239 44 KSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKG-I-KDKQV 120 (252)
T ss_pred HHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHcC-C-CcHHH
Confidence 8999999 99632 21 589999999987421 11345678999999998777 899999999875321 1 11222
Q ss_pred HHHHHh-------h--------h-hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCE
Q psy8953 74 KKDQVS-------L--------E-LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRT 118 (286)
Q Consensus 74 ~~~~v~-------l--------~-~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~t 118 (286)
..+++. + . ....+|||||| ||++||+.++..++++|+++++ +.|
T Consensus 121 ~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~t 199 (252)
T PRK14239 121 LDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYT 199 (252)
T ss_pred HHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCe
Confidence 222222 1 1 33568899999 9999999999999999999975 689
Q ss_pred EEEEEcCCCHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 119 VVATIHTPSALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 119 ii~~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
||+++|+++ .+..++|++++|++|++++.|+++++.
T Consensus 200 ii~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 235 (252)
T PRK14239 200 MLLVTRSMQ-QASRISDRTGFFLDGDLIEYNDTKQMF 235 (252)
T ss_pred EEEEECCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999986 466889999999999999999887764
No 210
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=8.9e-21 Score=162.04 Aligned_cols=150 Identities=17% Similarity=0.206 Sum_probs=116.5
Q ss_pred Cchhhhh-cCCCCC----CceeEEEECCeecCch--hhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHH
Q psy8953 1 MSIELNV-QSIRLT----GSSGKILVNGQERKSA--CIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQE 73 (286)
Q Consensus 1 ~stll~~-~g~~~~----~~~G~i~~~g~~~~~~--~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~ 73 (286)
|||||++ +|+.+. ..+|+|.++|.++... ....+++.++||+|++.+++ .||+|++.|+..... ..+.++
T Consensus 42 KSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~ 118 (250)
T PRK14262 42 KTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHG--VKSKHK 118 (250)
T ss_pred HHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHH
Confidence 8999999 997542 3789999999987531 12345678999999998887 899999999875321 112222
Q ss_pred HHHHHh-------h--------h-hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCE
Q psy8953 74 KKDQVS-------L--------E-LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRT 118 (286)
Q Consensus 74 ~~~~v~-------l--------~-~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~t 118 (286)
.++++. + . ....+||||+| ||++||+.++..++++|+++++ +.|
T Consensus 119 ~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~t 197 (250)
T PRK14262 119 LDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYT 197 (250)
T ss_pred HHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-CcE
Confidence 222221 1 1 33568899999 9999999999999999999975 789
Q ss_pred EEEEEcCCCHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 119 VVATIHTPSALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 119 ii~~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
||+++|+++ .+..++|++++|++|+++..|+++++.
T Consensus 198 ili~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14262 198 IVIVTHNIG-QAIRIADYIAFMYRGELIEYGPTREIV 233 (250)
T ss_pred EEEEeCCHH-HHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 999999986 466889999999999999999887664
No 211
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.84 E-value=5.4e-21 Score=163.61 Aligned_cols=139 Identities=17% Similarity=0.138 Sum_probs=111.9
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
||||+++ +|+.+. .+|+|.++|.++. .+++.++||+|++.+++.+||+|++.|.... ...++..+.++
T Consensus 51 KSTLlk~l~Gl~~p-~~G~i~~~g~~~~-----~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~-----~~~~~~~~~l~ 119 (257)
T PRK11247 51 KSTLLRLLAGLETP-SAGELLAGTAPLA-----EAREDTRLMFQDARLLPWKKVIDNVGLGLKG-----QWRDAALQALA 119 (257)
T ss_pred HHHHHHHHhcCCCC-CCeEEEECCEEHH-----HhhCceEEEecCccCCCCCcHHHHHHhcccc-----hHHHHHHHHHH
Confidence 8999999 997544 6899999998753 3467899999999888999999999986421 01222222222
Q ss_pred ---hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHh-CCCEEEEEEcCCCHHHH
Q psy8953 80 ---LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAK-QGRTVVATIHTPSALLF 131 (286)
Q Consensus 80 ---l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~-~g~tii~~~h~~~~~~~ 131 (286)
+. ....+|||||| ||++||+.++..+.++|+++++ .|.|||+++|+++ .+.
T Consensus 120 ~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~-~~~ 198 (257)
T PRK11247 120 AVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVS-EAV 198 (257)
T ss_pred HcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHH
Confidence 22 44679999999 9999999999999999999976 4899999999986 456
Q ss_pred HHhhhHhhhcCCeeecccCh
Q psy8953 132 EKFDSLYALAKGHCIYRGSI 151 (286)
Q Consensus 132 ~~~d~v~~l~~G~i~~~g~~ 151 (286)
..+|++++|++|++++.++.
T Consensus 199 ~~~d~i~~l~~G~i~~~~~~ 218 (257)
T PRK11247 199 AMADRVLLIEEGKIGLDLTV 218 (257)
T ss_pred HhCCEEEEEECCEEEeeccc
Confidence 78999999999999987754
No 212
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=6.9e-21 Score=162.82 Aligned_cols=151 Identities=13% Similarity=0.124 Sum_probs=115.2
Q ss_pred Cchhhhh-cCCCC--C--CceeEEEECCeecCchh--hhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHH
Q psy8953 1 MSIELNV-QSIRL--T--GSSGKILVNGQERKSAC--IEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQE 73 (286)
Q Consensus 1 ~stll~~-~g~~~--~--~~~G~i~~~g~~~~~~~--~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~ 73 (286)
||||+++ +|... . ..+|+|+++|+++...+ ...+++.++||+|++.+++. ||.|++.|....+. .....++
T Consensus 44 KSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~-~~~~~~~ 121 (251)
T PRK14244 44 KSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHG-LAKNKKK 121 (251)
T ss_pred HHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCcccccC-CHHHHHHHHHHhcC-CCCCHHH
Confidence 8999999 99753 2 36999999999875321 12346789999999988875 99999999864321 1111222
Q ss_pred HHHHHh-------hh---------hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCE
Q psy8953 74 KKDQVS-------LE---------LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRT 118 (286)
Q Consensus 74 ~~~~v~-------l~---------~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~t 118 (286)
.++++. +. ....+|||||| ||++||+.++..+.+.|+++.+ |.|
T Consensus 122 ~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~t 200 (251)
T PRK14244 122 LDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKK-NFT 200 (251)
T ss_pred HHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCe
Confidence 222222 21 23458899999 9999999999999999999964 899
Q ss_pred EEEEEcCCCHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 119 VVATIHTPSALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 119 ii~~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
||+++|+++ .+..++|++++|++|++++.|+++++.
T Consensus 201 iiiisH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (251)
T PRK14244 201 IIVVTHSMK-QAKKVSDRVAFFQSGRIVEYNTTQEIF 236 (251)
T ss_pred EEEEeCCHH-HHHhhcCEEEEEECCEEEEeCCHHHHh
Confidence 999999986 466889999999999999999877654
No 213
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.84 E-value=7.9e-21 Score=173.24 Aligned_cols=152 Identities=20% Similarity=0.289 Sum_probs=128.6
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecC--chhhhcccceeeEEecCcc--cCCCCCHHHHHHHHHhcCCCCCCCHHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERK--SACIEQFLKLSCYIQQDDA--LRPKLTVTEAMMIASHLKLGFKVSTQEKK 75 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~--~~~~~~~~~~~g~v~Q~~~--~~~~~tV~e~l~f~~~~~~~~~~~~~~~~ 75 (286)
||||..+ +|+.+. .+|+|.++|++.+ ....+..++.+=+|||||. +-|..||++.|+..+...... ...+++
T Consensus 330 KSTlar~i~gL~~P-~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~--~~~~~~ 406 (539)
T COG1123 330 KSTLARILAGLLPP-SSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGG--SGAERR 406 (539)
T ss_pred HHHHHHHHhCCCCC-CCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhccc--chHHHH
Confidence 8999999 998776 8999999998832 2223456789999999995 679999999999999854432 255666
Q ss_pred HHHh------------hh-hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC-CCEEEEE
Q psy8953 76 DQVS------------LE-LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ-GRTVVAT 122 (286)
Q Consensus 76 ~~v~------------l~-~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~-g~tii~~ 122 (286)
+||. +. +++.+|||||| |||-||+..+.+++++|++|.++ |.|.+++
T Consensus 407 ~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfI 486 (539)
T COG1123 407 ARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFI 486 (539)
T ss_pred HHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEE
Confidence 6654 33 78899999999 99999999999999999999987 9999999
Q ss_pred EcCCCHHHHHHhhhHhhhcCCeeecccChhcHHH
Q psy8953 123 IHTPSALLFEKFDSLYALAKGHCIYRGSISRLVP 156 (286)
Q Consensus 123 ~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 156 (286)
.|+.. .+...||||+||.+|+|+..|+.++++.
T Consensus 487 SHDl~-vV~~i~drv~vm~~G~iVE~G~~~~v~~ 519 (539)
T COG1123 487 SHDLA-VVRYIADRVAVMYDGRIVEEGPTEKVFE 519 (539)
T ss_pred eCCHH-HHHhhCceEEEEECCeEEEeCCHHHHhc
Confidence 99996 6778999999999999999998777764
No 214
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.84 E-value=9.9e-21 Score=163.61 Aligned_cols=150 Identities=17% Similarity=0.144 Sum_probs=116.4
Q ss_pred Cchhhhh-cCCCCC----CceeEEEECCeecCch--hhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHH
Q psy8953 1 MSIELNV-QSIRLT----GSSGKILVNGQERKSA--CIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQE 73 (286)
Q Consensus 1 ~stll~~-~g~~~~----~~~G~i~~~g~~~~~~--~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~ 73 (286)
||||+++ +|..+. ..+|+|+++|+++... +...+++.++||+|++.+++. ||.|++.|.+.... . ..+++
T Consensus 64 KSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~-~-~~~~~ 140 (272)
T PRK14236 64 KSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQG-I-NNRRV 140 (272)
T ss_pred HHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC-C-CcHHH
Confidence 8999999 997542 3799999999987531 123456889999999988876 99999998865321 1 11222
Q ss_pred HHHHHh-------h--------h-hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCE
Q psy8953 74 KKDQVS-------L--------E-LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRT 118 (286)
Q Consensus 74 ~~~~v~-------l--------~-~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~t 118 (286)
..+++. + . ....+||||+| ||++||+.++..++++|+++++ +.|
T Consensus 141 ~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~t 219 (272)
T PRK14236 141 LDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYT 219 (272)
T ss_pred HHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCe
Confidence 222222 1 1 23558899999 9999999999999999999976 789
Q ss_pred EEEEEcCCCHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 119 VVATIHTPSALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 119 ii~~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
||+++|+++. +..++|++++|++|+++..|+++++.
T Consensus 220 iiivtH~~~~-~~~~~d~i~~l~~G~i~~~g~~~~~~ 255 (272)
T PRK14236 220 IVIVTHNMQQ-AARVSDYTAFMYMGKLVEYGDTDTLF 255 (272)
T ss_pred EEEEeCCHHH-HHhhCCEEEEEECCEEEecCCHHHHh
Confidence 9999999864 66889999999999999999877654
No 215
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.84 E-value=4.7e-21 Score=165.27 Aligned_cols=154 Identities=16% Similarity=0.179 Sum_probs=117.0
Q ss_pred Cchhhhh-cCCCCCC-------ceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCC-CCCCCH
Q psy8953 1 MSIELNV-QSIRLTG-------SSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKL-GFKVST 71 (286)
Q Consensus 1 ~stll~~-~g~~~~~-------~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~-~~~~~~ 71 (286)
||||+++ +|..+.. .+|+|.+||+++.......+++.++||+|++..++..||.|++.|+..... ......
T Consensus 40 KSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~ 119 (272)
T PRK13547 40 KSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALT 119 (272)
T ss_pred HHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCC
Confidence 8999999 9975432 389999999987543334556778999999876667999999998653111 001111
Q ss_pred HHHHHHHh-------hh-----hhhcccCCccc----------------------------cCCCcchHHHHHHHHHHHH
Q psy8953 72 QEKKDQVS-------LE-----LWNNFCKKKKK----------------------------KKRGLDSSSCSQCVSLLAN 111 (286)
Q Consensus 72 ~~~~~~v~-------l~-----~~~~~~gG~kq----------------------------ptsgLD~~~~~~~~~~l~~ 111 (286)
++..+++. +. ...++||||+| ||++||+.++..+.++|++
T Consensus 120 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 199 (272)
T PRK13547 120 HRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRR 199 (272)
T ss_pred HHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHH
Confidence 12222222 22 34568899987 9999999999999999999
Q ss_pred HHhC-CCEEEEEEcCCCHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 112 LAKQ-GRTVVATIHTPSALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 112 l~~~-g~tii~~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
++++ |.|||+++|+++ .+..++|++++|++|++++.|+++++.
T Consensus 200 ~~~~~~~tviiisH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 243 (272)
T PRK13547 200 LARDWNLGVLAIVHDPN-LAARHADRIAMLADGAIVAHGAPADVL 243 (272)
T ss_pred HHHhcCCEEEEEECCHH-HHHHhCCEEEEEECCeEEEecCHHHHc
Confidence 9876 999999999986 466789999999999999999887664
No 216
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.84 E-value=9.8e-21 Score=163.23 Aligned_cols=150 Identities=16% Similarity=0.079 Sum_probs=117.2
Q ss_pred Cchhhhh-cCCCCC----CceeEEEECCeecCc--hhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHH
Q psy8953 1 MSIELNV-QSIRLT----GSSGKILVNGQERKS--ACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQE 73 (286)
Q Consensus 1 ~stll~~-~g~~~~----~~~G~i~~~g~~~~~--~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~ 73 (286)
|||||++ +|+.+. ..+|+|+++|+++.. ......++.+|||+|++.+++ .||+|++.|+..... ..+.++
T Consensus 59 KSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~ 135 (267)
T PRK14237 59 KSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNPFA-KSIYENITFALERAG--VKDKKV 135 (267)
T ss_pred HHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhcC--CCCHHH
Confidence 8999999 997542 479999999998753 112345678999999998877 599999999865311 112333
Q ss_pred HHHHHh-------h--------h-hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCE
Q psy8953 74 KKDQVS-------L--------E-LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRT 118 (286)
Q Consensus 74 ~~~~v~-------l--------~-~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~t 118 (286)
..+++. + . ....+||||+| ||++||+.++..+.++|+++.+ +.|
T Consensus 136 ~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~t 214 (267)
T PRK14237 136 LDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKK-NYT 214 (267)
T ss_pred HHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCE
Confidence 333322 2 1 34568899999 9999999999999999999964 789
Q ss_pred EEEEEcCCCHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 119 VVATIHTPSALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 119 ii~~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
||+++|+++ .+.+++|++++|++|+++..|+++++.
T Consensus 215 iii~tH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 250 (267)
T PRK14237 215 IIIVTHNMQ-QAARASDYTAFFYLGDLIEYDKTRNIF 250 (267)
T ss_pred EEEEecCHH-HHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 999999986 466889999999999999999987764
No 217
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=9.9e-21 Score=167.24 Aligned_cols=149 Identities=12% Similarity=0.137 Sum_probs=117.3
Q ss_pred Cchhhhh-cCCCCC----CceeEEEECCeecCc--hhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHH
Q psy8953 1 MSIELNV-QSIRLT----GSSGKILVNGQERKS--ACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQE 73 (286)
Q Consensus 1 ~stll~~-~g~~~~----~~~G~i~~~g~~~~~--~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~ 73 (286)
|||||++ +|.... ..+|+|++||+++.. .....+++.++||+|+|.+| ..||+|++.|+.... ..+.++
T Consensus 121 KSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~-~~ti~eNi~~~~~~~---~~~~~~ 196 (329)
T PRK14257 121 KSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPF-EMSIFDNVAYGPRNN---GINDRK 196 (329)
T ss_pred HHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCccC-CCcHHHHHHhHHHhc---CCChHH
Confidence 8999999 997542 368999999999863 12235578899999999877 479999999987531 122222
Q ss_pred H-HHH-------Hhh--------h-hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCC
Q psy8953 74 K-KDQ-------VSL--------E-LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGR 117 (286)
Q Consensus 74 ~-~~~-------v~l--------~-~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~ 117 (286)
. .+. +.| . ....+|||||| ||++||+.+...+.++|+++.+ +.
T Consensus 197 ~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~ 275 (329)
T PRK14257 197 ILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-KY 275 (329)
T ss_pred HHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CC
Confidence 2 111 112 1 33558899999 9999999999999999999976 68
Q ss_pred EEEEEEcCCCHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 118 TVVATIHTPSALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 118 tii~~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
|||+++|+++. +.+++||+++|++|+++..|++++++
T Consensus 276 Tii~iTH~l~~-i~~~~Driivl~~G~i~e~g~~~~l~ 312 (329)
T PRK14257 276 SIIIVTHSMAQ-AQRISDETVFFYQGWIEEAGETKTIF 312 (329)
T ss_pred EEEEEeCCHHH-HHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999864 66789999999999999999998875
No 218
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.84 E-value=3.4e-21 Score=186.65 Aligned_cols=143 Identities=17% Similarity=0.235 Sum_probs=118.9
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
||||+++ +|+.+. .+|+|++||+++...+...+++.+|||+||+.+|. -|++|+|.++.. .+.+++.+-.+
T Consensus 492 KSTLlklL~gl~~p-~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~-gTI~eNi~~~~~------~~~e~i~~al~ 563 (686)
T TIGR03797 492 KSTLLRLLLGFETP-ESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMS-GSIFENIAGGAP------LTLDEAWEAAR 563 (686)
T ss_pred HHHHHHHHhCCCCC-CCCEEEECCEEcCcCCHHHHHhccEEEccCCccCc-ccHHHHHhcCCC------CCHHHHHHHHH
Confidence 8999999 996554 79999999999987777888999999999998875 599999998632 35666655444
Q ss_pred ---h-----------h-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEE
Q psy8953 80 ---L-----------E-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVA 121 (286)
Q Consensus 80 ---l-----------~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~ 121 (286)
+ + ....+|||||| |||+||+.+..++++.|+++ ++|+|+
T Consensus 564 ~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~Ii 640 (686)
T TIGR03797 564 MAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL---KVTRIV 640 (686)
T ss_pred HcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEE
Confidence 1 1 11347899999 99999999999999999887 579999
Q ss_pred EEcCCCHHHHHHhhhHhhhcCCeeecccChhcHHH
Q psy8953 122 TIHTPSALLFEKFDSLYALAKGHCIYRGSISRLVP 156 (286)
Q Consensus 122 ~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 156 (286)
++|+++. + ..+|+|++|++|+++..|+.+++.+
T Consensus 641 ItHr~~~-i-~~~D~Iivl~~G~iv~~G~~~~Ll~ 673 (686)
T TIGR03797 641 IAHRLST-I-RNADRIYVLDAGRVVQQGTYDELMA 673 (686)
T ss_pred EecChHH-H-HcCCEEEEEECCEEEEECCHHHHHh
Confidence 9999963 3 6699999999999999999887653
No 219
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=1.2e-20 Score=161.61 Aligned_cols=150 Identities=17% Similarity=0.143 Sum_probs=116.2
Q ss_pred Cchhhhh-cCCCCC--C--ceeEEEECCeecCch--hhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHH
Q psy8953 1 MSIELNV-QSIRLT--G--SSGKILVNGQERKSA--CIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQE 73 (286)
Q Consensus 1 ~stll~~-~g~~~~--~--~~G~i~~~g~~~~~~--~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~ 73 (286)
||||+++ +|.... . .+|+|.++|+++... +....++.++||+|++.+++. ||+|++.|+++.+... +..+
T Consensus 45 KSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~--~~~~ 121 (253)
T PRK14261 45 KSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHGEK--NKKT 121 (253)
T ss_pred HHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecCCccCcc-cHHHHHHhhHHhcCCC--CHHH
Confidence 8999999 997431 1 489999999987532 123456789999999988875 9999999987642211 1222
Q ss_pred HHHHHh-------h--------h-hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCE
Q psy8953 74 KKDQVS-------L--------E-LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRT 118 (286)
Q Consensus 74 ~~~~v~-------l--------~-~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~t 118 (286)
.++++. + . ....+||||+| ||++||+.++..+.++|+++++ +.|
T Consensus 122 ~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~t 200 (253)
T PRK14261 122 LDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYT 200 (253)
T ss_pred HHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-Cce
Confidence 222221 1 1 33458899999 9999999999999999999976 589
Q ss_pred EEEEEcCCCHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 119 VVATIHTPSALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 119 ii~~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
||+++|+++. +.+++|++++|++|+++..|+++++.
T Consensus 201 vii~sh~~~~-~~~~~d~v~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14261 201 VIIVTHNMQQ-AARVSDYTGFMYLGKLIEFDKTTQIF 236 (253)
T ss_pred EEEEEcCHHH-HHhhCCEEEEEECCEEEEcCCHHHHH
Confidence 9999999864 66789999999999999999987664
No 220
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=1.1e-20 Score=162.37 Aligned_cols=152 Identities=15% Similarity=0.138 Sum_probs=118.0
Q ss_pred Cchhhhh-cCCCCCC----ceeEEEECCeecCc--hhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHH
Q psy8953 1 MSIELNV-QSIRLTG----SSGKILVNGQERKS--ACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQE 73 (286)
Q Consensus 1 ~stll~~-~g~~~~~----~~G~i~~~g~~~~~--~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~ 73 (286)
|||||++ +|..+.. .+|+|.++|+++.. .+...+++.++||+|++.+++ .||.|++.+...... . .+..+
T Consensus 46 KSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~-~-~~~~~ 122 (261)
T PRK14258 46 KSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVG-W-RPKLE 122 (261)
T ss_pred HHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHhhccEEEEecCCccCc-ccHHHHHHHHHHhcC-C-CcHHH
Confidence 8999999 9975532 58999999998742 112345678999999988877 899999998865321 0 12222
Q ss_pred HHHHHh-------h--------h-hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHh-CCC
Q psy8953 74 KKDQVS-------L--------E-LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAK-QGR 117 (286)
Q Consensus 74 ~~~~v~-------l--------~-~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~-~g~ 117 (286)
..+++. + . ....+||||+| ||++||+.++..+.+.|++++. .|.
T Consensus 123 ~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~ 202 (261)
T PRK14258 123 IDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSEL 202 (261)
T ss_pred HHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCC
Confidence 222222 1 1 33568999999 9999999999999999999976 489
Q ss_pred EEEEEEcCCCHHHHHHhhhHhhhcC-----CeeecccChhcHHH
Q psy8953 118 TVVATIHTPSALLFEKFDSLYALAK-----GHCIYRGSISRLVP 156 (286)
Q Consensus 118 tii~~~h~~~~~~~~~~d~v~~l~~-----G~i~~~g~~~~~~~ 156 (286)
|||+++|+++ .+..++|++++|++ |++++.|+++++..
T Consensus 203 tiiivsH~~~-~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~~~~ 245 (261)
T PRK14258 203 TMVIVSHNLH-QVSRLSDFTAFFKGNENRIGQLVEFGLTKKIFN 245 (261)
T ss_pred EEEEEECCHH-HHHHhcCEEEEEccCCCcCceEEEeCCHHHHHh
Confidence 9999999986 46688999999999 99999999888753
No 221
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.84 E-value=1.4e-20 Score=159.41 Aligned_cols=143 Identities=18% Similarity=0.250 Sum_probs=112.2
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEec-CcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQ-DDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQV 78 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q-~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v 78 (286)
|||||++ +|..+. .+|+|.++|+++... ...+++.++||+| ++.+++.+||+|++.|...+. ....++..+++
T Consensus 60 KSTLl~~i~Gl~~p-~~G~i~~~g~~~~~~-~~~~~~~i~~~~~~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~ 134 (236)
T cd03267 60 KTTTLKILSGLLQP-TSGEVRVAGLVPWKR-RKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIY---DLPPARFKKRL 134 (236)
T ss_pred HHHHHHHHhCCcCC-CceEEEECCEEcccc-chhhcccEEEEcCCccccCCCCcHHHHHHHHHHHc---CCCHHHHHHHH
Confidence 8999999 997543 689999999876431 1345678999985 456889999999999987642 22333333333
Q ss_pred h-------hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC-CCEEEEEEcCC
Q psy8953 79 S-------LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ-GRTVVATIHTP 126 (286)
Q Consensus 79 ~-------l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~-g~tii~~~h~~ 126 (286)
. +. ....+||||+| ||++||+.++..+.++|++++++ |.|||+++|++
T Consensus 135 ~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~ 214 (236)
T cd03267 135 DELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYM 214 (236)
T ss_pred HHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCH
Confidence 2 22 33558899999 99999999999999999999875 89999999998
Q ss_pred CHHHHHHhhhHhhhcCCeeeccc
Q psy8953 127 SALLFEKFDSLYALAKGHCIYRG 149 (286)
Q Consensus 127 ~~~~~~~~d~v~~l~~G~i~~~g 149 (286)
+ .+..++|++++|++|++++.|
T Consensus 215 ~-~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 215 K-DIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred H-HHHHhCCEEEEEeCCEEEecC
Confidence 6 466889999999999998754
No 222
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=1.2e-20 Score=163.23 Aligned_cols=150 Identities=15% Similarity=0.161 Sum_probs=118.2
Q ss_pred Cchhhhh-cCCCCC----CceeEEEECCeecCch-hhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHH
Q psy8953 1 MSIELNV-QSIRLT----GSSGKILVNGQERKSA-CIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEK 74 (286)
Q Consensus 1 ~stll~~-~g~~~~----~~~G~i~~~g~~~~~~-~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~ 74 (286)
||||+++ +|..+. ..+|+|.++|.++... ....+++.++||+|++.+|+ .||.|++.|+.+..- ..+.++.
T Consensus 60 KSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~~--~~~~~~~ 136 (276)
T PRK14271 60 KTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAHK--LVPRKEF 136 (276)
T ss_pred HHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEeccCCccCC-ccHHHHHHHHHHhcc--CCCHHHH
Confidence 8999999 997543 3799999999987542 12345678999999998887 899999998865311 1234443
Q ss_pred HHHHh-------hh---------hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEE
Q psy8953 75 KDQVS-------LE---------LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTV 119 (286)
Q Consensus 75 ~~~v~-------l~---------~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~ti 119 (286)
.+++. +. ....+||||+| ||++||+.++..+.+.|+++++ +.||
T Consensus 137 ~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~ti 215 (276)
T PRK14271 137 RGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTV 215 (276)
T ss_pred HHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEE
Confidence 33322 21 23468899999 9999999999999999999976 4899
Q ss_pred EEEEcCCCHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 120 VATIHTPSALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 120 i~~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
|+++|+++ .+..++||+++|++|+++..|+++++.
T Consensus 216 iivsH~~~-~~~~~~dri~~l~~G~i~~~g~~~~~~ 250 (276)
T PRK14271 216 IIVTHNLA-QAARISDRAALFFDGRLVEEGPTEQLF 250 (276)
T ss_pred EEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999986 466889999999999999999987764
No 223
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.84 E-value=1.5e-20 Score=183.89 Aligned_cols=178 Identities=21% Similarity=0.335 Sum_probs=117.9
Q ss_pred cCCCCCHHHHHHHHHhcCCCCC---C---CHHHHHHHHh------hh------hhhcccCCccc----------------
Q psy8953 47 LRPKLTVTEAMMIASHLKLGFK---V---STQEKKDQVS------LE------LWNNFCKKKKK---------------- 92 (286)
Q Consensus 47 ~~~~~tV~e~l~f~~~~~~~~~---~---~~~~~~~~v~------l~------~~~~~~gG~kq---------------- 92 (286)
++..++|.|.++|.-.+.++.. + -..++.+|++ |. ...++||||+|
T Consensus 433 ~~~~~~v~~~~~~~~~~~~~~~~~~~a~~~~~~i~~rl~~L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~l 512 (943)
T PRK00349 433 EVSELSIGEALEFFENLKLSEQEAKIAEPILKEIRERLKFLVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVL 512 (943)
T ss_pred HHhcCcHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcE
Confidence 6889999999999444543210 0 0124445555 21 34568899999
Q ss_pred -----cCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHhhhHhhh------cCCeeecccChhcHHHHHHhC
Q psy8953 93 -----KKRGLDSSSCSQCVSLLANLAKQGRTVVATIHTPSALLFEKFDSLYAL------AKGHCIYRGSISRLVPHLASL 161 (286)
Q Consensus 93 -----ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~~~~~~~~~~d~v~~l------~~G~i~~~g~~~~~~~~~~~~ 161 (286)
||+|||+..+..++++|++|++.|.|||+++|+++. + ..+|+|++| ++|++++.|+++++......+
T Consensus 513 lILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~~-i-~~aD~vi~LgpgaG~~~G~iv~~g~~~e~~~~~~~l 590 (943)
T PRK00349 513 YVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDEDT-I-RAADYIVDIGPGAGVHGGEVVASGTPEEIMKNPNSL 590 (943)
T ss_pred EEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-H-HhCCEEEEeccccCCCCCEEeeccCHHHHhcChhhe
Confidence 999999999999999999998889999999999874 4 469999999 899999999988764311000
Q ss_pred CCCCCCCCCCCCccccccCCceeeeeccCchhhHHHHHHHHHHHhcCcceecCCccccccccccCCCCCCCCCCCCcccc
Q psy8953 162 GLPCPAYHNPADFPNLAKQGRTVVATIHTPSALLFEKFDSLYALAKGHCIYRGSISRLVPHLASLGLPCPAYHNPADFLN 241 (286)
Q Consensus 162 g~~~p~~~~~~~~~~~~~~g~tii~~~h~p~~~l~~~~d~~~~l~~g~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~ 241 (286)
- ..+. .+.... . .+.. . . ........++...
T Consensus 591 ~---------~~~l----~~~~~~-~--~~~~---------------~---~-~~~~~~L~v~~l~-------------- 621 (943)
T PRK00349 591 T---------GQYL----SGKKKI-E--VPKE---------------R---R-KGNGKFLKLKGAR-------------- 621 (943)
T ss_pred e---------ehhh----cccccc-c--cccc---------------c---c-CCCcceEEecCCc--------------
Confidence 0 0000 000000 0 0000 0 0 0000000111110
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHH
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNIL 275 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l 275 (286)
...|+++|++|++||+++|+|.||||||||++.+
T Consensus 622 ~~~L~~isl~Ip~GeivgVtGvsGSGKSTLl~~~ 655 (943)
T PRK00349 622 ENNLKNVDVEIPLGKFTCVTGVSGSGKSTLINET 655 (943)
T ss_pred cCCcCceEEEEeCCCEEEEEcCCCCCHHHHHHHH
Confidence 1258999999999999999999999999999875
No 224
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.83 E-value=2.9e-21 Score=187.81 Aligned_cols=146 Identities=22% Similarity=0.267 Sum_probs=120.2
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
||||+++ +|+... .+|+|++||.++...+...+++.+|||+||+.+|.. |++|+|.++.+ ...+.+++.+-++
T Consensus 513 KSTLlklL~gl~~p-~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g-TI~eNi~l~~~----~~~~~~~i~~a~~ 586 (708)
T TIGR01193 513 KSTLAKLLVGFFQA-RSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSG-SILENLLLGAK----ENVSQDEIWAACE 586 (708)
T ss_pred HHHHHHHHhccCCC-CCcEEEECCEEHHHcCHHHHHHheEEEecCceehhH-HHHHHHhccCC----CCCCHHHHHHHHH
Confidence 8999999 996544 789999999999877778889999999999998865 99999999853 1235666554333
Q ss_pred --------------hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEE
Q psy8953 80 --------------LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVA 121 (286)
Q Consensus 80 --------------l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~ 121 (286)
++ -...+|||||| |||+||+.+...+++.|+++ .++|+|+
T Consensus 587 ~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~--~~~T~Ii 664 (708)
T TIGR01193 587 IAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIF 664 (708)
T ss_pred HhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh--cCCEEEE
Confidence 11 12347899999 99999999999999999985 4789999
Q ss_pred EEcCCCHHHHHHhhhHhhhcCCeeecccChhcHHH
Q psy8953 122 TIHTPSALLFEKFDSLYALAKGHCIYRGSISRLVP 156 (286)
Q Consensus 122 ~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 156 (286)
++|+++. ...+|++++|++|+++..|+.+++..
T Consensus 665 itHr~~~--~~~~D~i~~l~~G~i~~~G~~~~L~~ 697 (708)
T TIGR01193 665 VAHRLSV--AKQSDKIIVLDHGKIIEQGSHDELLD 697 (708)
T ss_pred EecchHH--HHcCCEEEEEECCEEEEECCHHHHHh
Confidence 9999963 47799999999999999999887754
No 225
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.83 E-value=4.2e-21 Score=183.19 Aligned_cols=145 Identities=19% Similarity=0.234 Sum_probs=121.1
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
||||+++ +|+.+. .+|+|++||+++...+.+.+++.++||+||+.+|.. |++|+|.++.. .+.+++.+-++
T Consensus 380 KSTLl~lL~gl~~p-~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~-Ti~~NI~~~~~------~~d~~i~~a~~ 451 (592)
T PRK10790 380 KSTLASLLMGYYPL-TEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLAD-TFLANVTLGRD------ISEEQVWQALE 451 (592)
T ss_pred HHHHHHHHhcccCC-CCceEEECCEEhhhCCHHHHHhheEEEccCCccccc-hHHHHHHhCCC------CCHHHHHHHHH
Confidence 8999999 996554 689999999999877778889999999999998886 99999999742 34566554433
Q ss_pred ----------h----h-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEE
Q psy8953 80 ----------L----E-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVA 121 (286)
Q Consensus 80 ----------l----~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~ 121 (286)
+ + ....+|||||| |||+||+.+..++.+.|+++.+ ++|+|+
T Consensus 452 ~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~-~~tvIi 530 (592)
T PRK10790 452 TVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE-HTTLVV 530 (592)
T ss_pred HcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC-CCEEEE
Confidence 1 1 12348899999 9999999999999999999865 689999
Q ss_pred EEcCCCHHHHHHhhhHhhhcCCeeecccChhcHHH
Q psy8953 122 TIHTPSALLFEKFDSLYALAKGHCIYRGSISRLVP 156 (286)
Q Consensus 122 ~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 156 (286)
++|+++. ...+|+|++|++|+++..|+.+++.+
T Consensus 531 vtHr~~~--l~~~D~ii~l~~G~i~~~G~~~~L~~ 563 (592)
T PRK10790 531 IAHRLST--IVEADTILVLHRGQAVEQGTHQQLLA 563 (592)
T ss_pred EecchHH--HHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999953 36699999999999999999988753
No 226
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.83 E-value=3.4e-21 Score=183.55 Aligned_cols=147 Identities=20% Similarity=0.252 Sum_probs=120.9
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
||||+++ +|+.+. .+|+|++||+++...+...+++.++||+||+.+|. -|++|+|.++.. ...+.+++.+..+
T Consensus 382 KSTLl~ll~gl~~p-~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~-~Ti~~Ni~~~~~----~~~~~~~i~~al~ 455 (582)
T PRK11176 382 KSTIANLLTRFYDI-DEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFN-DTIANNIAYART----EQYSREQIEEAAR 455 (582)
T ss_pred HHHHHHHHHhccCC-CCceEEECCEEhhhcCHHHHHhhceEEccCceeec-chHHHHHhcCCC----CCCCHHHHHHHHH
Confidence 8999999 996544 78999999999987666788899999999998886 699999988642 2235666654433
Q ss_pred --------------hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEE
Q psy8953 80 --------------LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVA 121 (286)
Q Consensus 80 --------------l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~ 121 (286)
++ ....+|||||| |||+||+.+..++++.|.++.+ ++|+|+
T Consensus 456 ~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~-~~tvI~ 534 (582)
T PRK11176 456 MAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLV 534 (582)
T ss_pred HhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEE
Confidence 11 12347899999 9999999999999999999855 689999
Q ss_pred EEcCCCHHHHHHhhhHhhhcCCeeecccChhcHHH
Q psy8953 122 TIHTPSALLFEKFDSLYALAKGHCIYRGSISRLVP 156 (286)
Q Consensus 122 ~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 156 (286)
++|+++ ....||+|++|++|+++..|+.+++.+
T Consensus 535 VtHr~~--~~~~~D~Ii~l~~g~i~e~g~~~~l~~ 567 (582)
T PRK11176 535 IAHRLS--TIEKADEILVVEDGEIVERGTHAELLA 567 (582)
T ss_pred EecchH--HHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 999995 347799999999999999999887754
No 227
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.83 E-value=5.8e-21 Score=159.32 Aligned_cols=141 Identities=21% Similarity=0.320 Sum_probs=106.7
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccC--CCCCHHHHHHHHHhcCCC-CCCCHHHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALR--PKLTVTEAMMIASHLKLG-FKVSTQEKKD 76 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~--~~~tV~e~l~f~~~~~~~-~~~~~~~~~~ 76 (286)
||||+++ +|..+. .+|+|.++|+++. .+++.++||+|++.++ +.+||+|++.|+...... .....++..+
T Consensus 38 KSTLl~~l~G~~~p-~~G~i~~~g~~~~-----~~~~~i~~v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ 111 (213)
T cd03235 38 KSTLLKAILGLLKP-TSGSIRVFGKPLE-----KERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKA 111 (213)
T ss_pred HHHHHHHHcCCCCC-CCCEEEECCccHH-----HHHhheEEeccccccccCCCCcHHHHHHhccccccccccCCCHHHHH
Confidence 8999999 997543 6899999998763 3457899999998653 458999999997652110 0011122222
Q ss_pred HHh-------hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcC
Q psy8953 77 QVS-------LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVATIHT 125 (286)
Q Consensus 77 ~v~-------l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~ 125 (286)
++. +. ....+|||||| ||++||+.++..+.+.|++++++|.|||+++|+
T Consensus 112 ~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~ 191 (213)
T cd03235 112 KVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHD 191 (213)
T ss_pred HHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 222 21 34678999999 999999999999999999998789999999999
Q ss_pred CCHHHHHHhhhHhhhcCCeeeccc
Q psy8953 126 PSALLFEKFDSLYALAKGHCIYRG 149 (286)
Q Consensus 126 ~~~~~~~~~d~v~~l~~G~i~~~g 149 (286)
++ .+..++|++++|++| +++.|
T Consensus 192 ~~-~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 192 LG-LVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HH-HHHHhcCEEEEEcCc-EeecC
Confidence 86 466889999999886 55543
No 228
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.83 E-value=2.7e-20 Score=151.98 Aligned_cols=148 Identities=20% Similarity=0.308 Sum_probs=129.3
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
|||.+.+ .|+... .+|+|.+||++++ ...+..+||.|.+-.+++.+||+|.|.|-|+| .+++.+|+++++.
T Consensus 41 KTTtfRmILglle~-~~G~I~~~g~~~~----~~~~~rIGyLPEERGLy~k~tv~dql~yla~L---kGm~~~e~~~~~~ 112 (300)
T COG4152 41 KTTTFRMILGLLEP-TEGEITWNGGPLS----QEIKNRIGYLPEERGLYPKMTVEDQLKYLAEL---KGMPKAEIQKKLQ 112 (300)
T ss_pred ccchHHHHhccCCc-cCceEEEcCcchh----hhhhhhcccChhhhccCccCcHHHHHHHHHHh---cCCcHHHHHHHHH
Confidence 7888888 886554 7999999999997 45678999999999999999999999999998 5688999998877
Q ss_pred --hh----------hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcCCCH
Q psy8953 80 --LE----------LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVATIHTPSA 128 (286)
Q Consensus 80 --l~----------~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~~~~ 128 (286)
|+ ...++|-|..| |.|||||...+.+-+.+.+++++|.|||.+.|+.+
T Consensus 113 ~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me- 191 (300)
T COG4152 113 AWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRME- 191 (300)
T ss_pred HHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHH-
Confidence 21 23456755555 99999999999999999999999999999999997
Q ss_pred HHHHHhhhHhhhcCCeeecccChhcHHHH
Q psy8953 129 LLFEKFDSLYALAKGHCIYRGSISRLVPH 157 (286)
Q Consensus 129 ~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 157 (286)
.+-.+||+++.|+.|+.|..|+.+++...
T Consensus 192 ~vEeLCD~llmL~kG~~V~~G~v~~ir~~ 220 (300)
T COG4152 192 HVEELCDRLLMLKKGQTVLYGTVEDIRRS 220 (300)
T ss_pred HHHHHhhhhheecCCceEEeccHHHHHHh
Confidence 57799999999999999999999988763
No 229
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.83 E-value=4.1e-21 Score=186.84 Aligned_cols=144 Identities=19% Similarity=0.212 Sum_probs=118.7
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
||||+++ +|..+. .+|+|++||.++...+...+++.+|||+||+.+|. -|++|+|.++. ...+.+++.+-.+
T Consensus 518 KSTLlklL~gl~~p-~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~-gTi~eNi~l~~-----~~~~~~~i~~al~ 590 (710)
T TIGR03796 518 KSTIAKLVAGLYQP-WSGEILFDGIPREEIPREVLANSVAMVDQDIFLFE-GTVRDNLTLWD-----PTIPDADLVRACK 590 (710)
T ss_pred HHHHHHHHhcCCCC-CCcEEEECCEeHHHCCHHHHHhheeEEecCChhhh-ccHHHHhhCCC-----CCCCHHHHHHHHH
Confidence 8999999 996544 78999999999987767888999999999998874 59999998763 1245666654433
Q ss_pred --------------hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEE
Q psy8953 80 --------------LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVA 121 (286)
Q Consensus 80 --------------l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~ 121 (286)
++ ....+|||||| |||+||+.+..++++.|++ .++|+|+
T Consensus 591 ~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~Ii 667 (710)
T TIGR03796 591 DAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCII 667 (710)
T ss_pred HhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEE
Confidence 11 12347899999 9999999999999999976 4899999
Q ss_pred EEcCCCHHHHHHhhhHhhhcCCeeecccChhcHHH
Q psy8953 122 TIHTPSALLFEKFDSLYALAKGHCIYRGSISRLVP 156 (286)
Q Consensus 122 ~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 156 (286)
++|+++. + ..+|++++|++|+++..|+.+++.+
T Consensus 668 itHrl~~-i-~~~D~Iivl~~G~i~~~G~~~~Ll~ 700 (710)
T TIGR03796 668 VAHRLST-I-RDCDEIIVLERGKVVQRGTHEELWA 700 (710)
T ss_pred EecCHHH-H-HhCCEEEEEeCCEEEEecCHHHHHH
Confidence 9999863 4 6699999999999999999888764
No 230
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.83 E-value=1.8e-20 Score=161.93 Aligned_cols=150 Identities=14% Similarity=0.126 Sum_probs=115.6
Q ss_pred Cchhhhh-cCCCC--C--CceeEEEECCeecCc--hhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHH
Q psy8953 1 MSIELNV-QSIRL--T--GSSGKILVNGQERKS--ACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQE 73 (286)
Q Consensus 1 ~stll~~-~g~~~--~--~~~G~i~~~g~~~~~--~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~ 73 (286)
|||||++ +|..+ . ..+|+|.+||+++.. .....+++.+|||+|++.+++. ||+|++.|+..... ..+.+.
T Consensus 63 KSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~eni~~~~~~~~--~~~~~~ 139 (271)
T PRK14238 63 KSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKPNPFPK-SIYDNVTYGPKIHG--IKDKKT 139 (271)
T ss_pred HHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHHhhhEEEEecCCccccc-cHHHHHHHHHHhcC--CCcHHH
Confidence 8999999 99754 2 479999999998742 1123456789999999988774 99999999875311 011111
Q ss_pred HHHHHh---------------hh-hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCE
Q psy8953 74 KKDQVS---------------LE-LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRT 118 (286)
Q Consensus 74 ~~~~v~---------------l~-~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~t 118 (286)
..+++. +. ....+||||+| ||++||+.++..+.++|+++++ ++|
T Consensus 140 ~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~t 218 (271)
T PRK14238 140 LDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYS 218 (271)
T ss_pred HHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCE
Confidence 111111 12 44568999999 9999999999999999999976 799
Q ss_pred EEEEEcCCCHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 119 VVATIHTPSALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 119 ii~~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
||+++|+++ .+..++|++++|++|+++..|++.++.
T Consensus 219 iiivsH~~~-~i~~~~d~i~~l~~G~i~~~g~~~~~~ 254 (271)
T PRK14238 219 IIIVTHNMQ-QAARISDKTAFFLNGYVNEYDDTDKIF 254 (271)
T ss_pred EEEEEcCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999986 466889999999999999999877654
No 231
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=1.7e-20 Score=161.04 Aligned_cols=150 Identities=13% Similarity=0.113 Sum_probs=116.2
Q ss_pred Cchhhhh-cCCCCC--C--ceeEEEECCeecCc--hhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHH
Q psy8953 1 MSIELNV-QSIRLT--G--SSGKILVNGQERKS--ACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQE 73 (286)
Q Consensus 1 ~stll~~-~g~~~~--~--~~G~i~~~g~~~~~--~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~ 73 (286)
||||+++ +|..+. . .+|+|.++|+++.. .....+++.++||+|++.+++ .||+|++.|+.+.+.. .+..+
T Consensus 46 KSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~--~~~~~ 122 (259)
T PRK14260 46 KSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISAK--LPQAD 122 (259)
T ss_pred HHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhheEEEecccccCC-ccHHHHHHHHHHHhcC--CCHHH
Confidence 8999999 997542 1 58999999998742 112345678999999998887 8999999988753211 12222
Q ss_pred HHHHHh-------h--------h-hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCE
Q psy8953 74 KKDQVS-------L--------E-LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRT 118 (286)
Q Consensus 74 ~~~~v~-------l--------~-~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~t 118 (286)
..+++. + . ....+||||+| ||++||+.++..++++|+++++ +.|
T Consensus 123 ~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~t 201 (259)
T PRK14260 123 LDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELT 201 (259)
T ss_pred HHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCE
Confidence 222221 1 1 33568899999 9999999999999999999976 689
Q ss_pred EEEEEcCCCHHHHHHhhhHhhhc-----CCeeecccChhcHH
Q psy8953 119 VVATIHTPSALLFEKFDSLYALA-----KGHCIYRGSISRLV 155 (286)
Q Consensus 119 ii~~~h~~~~~~~~~~d~v~~l~-----~G~i~~~g~~~~~~ 155 (286)
||+++|+++ .+..++|++++|+ +|+++..|+++++.
T Consensus 202 iii~tH~~~-~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~~~ 242 (259)
T PRK14260 202 IAIVTHNMQ-QATRVSDFTAFFSTDESRIGQMVEFGVTTQIF 242 (259)
T ss_pred EEEEeCCHH-HHHHhcCeEEEEeccCCCCceEEEeCCHHHHh
Confidence 999999997 4668899999997 59999999988764
No 232
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=1.3e-20 Score=161.74 Aligned_cols=153 Identities=12% Similarity=0.066 Sum_probs=115.3
Q ss_pred Cchhhhh-cCCCCC----CceeEEEECCeecCch--hhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHH
Q psy8953 1 MSIELNV-QSIRLT----GSSGKILVNGQERKSA--CIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQE 73 (286)
Q Consensus 1 ~stll~~-~g~~~~----~~~G~i~~~g~~~~~~--~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~ 73 (286)
||||+++ +|..+. ..+|+|+++|+++... ....+++.++||+|++.++ .+||.|++.|+...+.......++
T Consensus 47 KSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~~~~~~~~~ 125 (261)
T PRK14263 47 KSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNRYKGDLGDR 125 (261)
T ss_pred HHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCCccc-cccHHHHHHHHHhhcCchHHHHHH
Confidence 8999999 997532 2699999999987531 1124567899999999877 699999999987642210000111
Q ss_pred HHHHHh---hh---------hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEE
Q psy8953 74 KKDQVS---LE---------LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVAT 122 (286)
Q Consensus 74 ~~~~v~---l~---------~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~ 122 (286)
..+.++ +. ....+||||+| ||+|||+.++.+++++|+++++ +.|||++
T Consensus 126 ~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~-~~tii~i 204 (261)
T PRK14263 126 VKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKK-DYTIALV 204 (261)
T ss_pred HHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEE
Confidence 222222 21 12358899999 9999999999999999999964 7899999
Q ss_pred EcCCCHHHHHHhhhHhhhc--------CCeeecccChhcHHH
Q psy8953 123 IHTPSALLFEKFDSLYALA--------KGHCIYRGSISRLVP 156 (286)
Q Consensus 123 ~h~~~~~~~~~~d~v~~l~--------~G~i~~~g~~~~~~~ 156 (286)
+|+++ .+..++||+++|+ +|+++..|+++++..
T Consensus 205 sH~~~-~i~~~~d~v~~l~~~~~~~~~~G~i~~~g~~~~~~~ 245 (261)
T PRK14263 205 THNMQ-QAIRVADTTAFFSVDISQGTRTGYLVEMGPTAQIFQ 245 (261)
T ss_pred eCCHH-HHHHhCCEEEEEecccccccCCceEEEeCCHHHHHh
Confidence 99986 4668899999995 899999999877653
No 233
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=2e-20 Score=161.44 Aligned_cols=150 Identities=14% Similarity=0.114 Sum_probs=114.9
Q ss_pred Cchhhhh-cCCCC----CCceeEEEECCeecCch--hhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHH
Q psy8953 1 MSIELNV-QSIRL----TGSSGKILVNGQERKSA--CIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQE 73 (286)
Q Consensus 1 ~stll~~-~g~~~----~~~~G~i~~~g~~~~~~--~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~ 73 (286)
|||||++ +|..+ ...+|+|.++|+++... +...+++.+|||+|++.+++. ||+|++.|..+... . .....
T Consensus 60 KSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~-~-~~~~~ 136 (268)
T PRK14248 60 KSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAG-E-RRKSV 136 (268)
T ss_pred HHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC-C-CcHHH
Confidence 8999999 99642 14789999999987531 112456789999999988875 99999998865321 1 11111
Q ss_pred HHHHHh-------h--------h-hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCE
Q psy8953 74 KKDQVS-------L--------E-LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRT 118 (286)
Q Consensus 74 ~~~~v~-------l--------~-~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~t 118 (286)
.++++. + . ....+||||+| ||++||+.++..+.++|+++++ +.|
T Consensus 137 ~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~t 215 (268)
T PRK14248 137 LDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYS 215 (268)
T ss_pred HHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCE
Confidence 112111 1 1 34568899999 9999999999999999999976 689
Q ss_pred EEEEEcCCCHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 119 VVATIHTPSALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 119 ii~~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
||+++|+++ .+..++||+++|++|++++.|+++++.
T Consensus 216 iii~tH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~~ 251 (268)
T PRK14248 216 IIIVTHNMQ-QALRVSDRTAFFLNGDLVEYDQTEQIF 251 (268)
T ss_pred EEEEEeCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999986 466889999999999999999877654
No 234
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.83 E-value=5.4e-21 Score=162.22 Aligned_cols=146 Identities=18% Similarity=0.250 Sum_probs=113.9
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
||||+++ +|..+. .+|+|++||+++...+....++.++||+|++.+++ .||+|++.|....+ ..++..+..+
T Consensus 42 KSTLl~~i~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~-----~~~~~~~~~~ 114 (238)
T cd03249 42 KSTVVSLLERFYDP-TSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFD-GTIAENIRYGKPDA-----TDEEVEEAAK 114 (238)
T ss_pred HHHHHHHHhccCCC-CCCEEEECCEehhhcCHHHHHhhEEEECCchhhhh-hhHHHHhhccCCCC-----CHHHHHHHHH
Confidence 8999999 997543 68999999998754323444577999999998775 69999999865421 1222222111
Q ss_pred ----------h--------h-hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEE
Q psy8953 80 ----------L--------E-LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVA 121 (286)
Q Consensus 80 ----------l--------~-~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~ 121 (286)
+ . ....+||||+| ||++||+.++.++++.|++++ +|.|||+
T Consensus 115 ~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~ 193 (238)
T cd03249 115 KANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM-KGRTTIV 193 (238)
T ss_pred HcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEE
Confidence 1 0 23568999999 999999999999999999997 7999999
Q ss_pred EEcCCCHHHHHHhhhHhhhcCCeeecccChhcHHH
Q psy8953 122 TIHTPSALLFEKFDSLYALAKGHCIYRGSISRLVP 156 (286)
Q Consensus 122 ~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 156 (286)
++|+++. + ..+|++++|++|++++.|+.+++..
T Consensus 194 ~sh~~~~-~-~~~d~v~~l~~G~i~~~~~~~~~~~ 226 (238)
T cd03249 194 IAHRLST-I-RNADLIAVLQNGQVVEQGTHDELMA 226 (238)
T ss_pred EeCCHHH-H-hhCCEEEEEECCEEEEeCCHHHHhh
Confidence 9999875 4 4799999999999999998776643
No 235
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.83 E-value=7.8e-21 Score=163.84 Aligned_cols=144 Identities=16% Similarity=0.140 Sum_probs=116.4
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
|||||++ +|..+ .+|+|+++|.++...+...+++.++||+|++.+|+. ||+|++.+... ...+++.+.++
T Consensus 43 KSTLl~~L~gl~~--~~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~~-tv~~nl~~~~~------~~~~~~~~~l~ 113 (275)
T cd03289 43 KSTLLSAFLRLLN--TEGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSG-TFRKNLDPYGK------WSDEEIWKVAE 113 (275)
T ss_pred HHHHHHHHhhhcC--CCcEEEECCEEhhhCCHHHHhhhEEEECCCcccchh-hHHHHhhhccC------CCHHHHHHHHH
Confidence 8999999 99875 579999999998655456677899999999998874 99999964321 23455554443
Q ss_pred ---hh-----hhhc-----------ccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEE
Q psy8953 80 ---LE-----LWNN-----------FCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVA 121 (286)
Q Consensus 80 ---l~-----~~~~-----------~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~ 121 (286)
|. .... +||||+| ||++||+.+...+.+.|+++. .++|||+
T Consensus 114 ~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~-~~~tii~ 192 (275)
T cd03289 114 EVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF-ADCTVIL 192 (275)
T ss_pred HcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEE
Confidence 22 2222 8999999 999999999999999999885 4899999
Q ss_pred EEcCCCHHHHHHhhhHhhhcCCeeecccChhcHHH
Q psy8953 122 TIHTPSALLFEKFDSLYALAKGHCIYRGSISRLVP 156 (286)
Q Consensus 122 ~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 156 (286)
++|+++ .+. .+||+++|++|+++..|+++++..
T Consensus 193 isH~~~-~i~-~~dri~vl~~G~i~~~g~~~~l~~ 225 (275)
T cd03289 193 SEHRIE-AML-ECQRFLVIEENKVRQYDSIQKLLN 225 (275)
T ss_pred EECCHH-HHH-hCCEEEEecCCeEeecCCHHHHhh
Confidence 999995 454 499999999999999999988764
No 236
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=2.9e-20 Score=159.09 Aligned_cols=150 Identities=15% Similarity=0.144 Sum_probs=115.5
Q ss_pred Cchhhhh-cCCCC--CC--ceeEEEECCeecCc--hhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHH
Q psy8953 1 MSIELNV-QSIRL--TG--SSGKILVNGQERKS--ACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQE 73 (286)
Q Consensus 1 ~stll~~-~g~~~--~~--~~G~i~~~g~~~~~--~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~ 73 (286)
|||||++ +|..+ .. .+|+|.+||+++.. .....+++.+|||+|++.+++ .||.|++.|....+.. ...++
T Consensus 44 KSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~--~~~~~ 120 (252)
T PRK14255 44 KSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGV--KDKAV 120 (252)
T ss_pred HHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcCC--CCHHH
Confidence 8999999 99643 21 58999999998742 112345678999999998887 6999999998653211 11222
Q ss_pred HHHH-------Hhh--------h-hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCE
Q psy8953 74 KKDQ-------VSL--------E-LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRT 118 (286)
Q Consensus 74 ~~~~-------v~l--------~-~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~t 118 (286)
..++ +.+ . ....+||||+| ||++||+.++..+.++|+++++ +.|
T Consensus 121 ~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~t 199 (252)
T PRK14255 121 LDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYT 199 (252)
T ss_pred HHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCE
Confidence 2222 211 1 34568999999 9999999999999999999976 589
Q ss_pred EEEEEcCCCHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 119 VVATIHTPSALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 119 ii~~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
||+++|+++ .+..++|++++|++|+++..|++.+..
T Consensus 200 ii~vsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14255 200 IILVTHSMH-QASRISDKTAFFLTGNLIEFADTKQMF 235 (252)
T ss_pred EEEEECCHH-HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999986 466889999999999999999887664
No 237
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.83 E-value=6.2e-21 Score=185.10 Aligned_cols=147 Identities=16% Similarity=0.240 Sum_probs=122.3
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
||||+++ +|+.+. .+|+|++||+++...+...+++.+|||+||+.+|. .|++|+|.++-. ..+.+++.+-++
T Consensus 504 KSTLlklL~gl~~p-~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~-~TI~eNi~~~~~-----~~~~~~i~~a~~ 576 (694)
T TIGR03375 504 KSTLLKLLLGLYQP-TEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFY-GTLRDNIALGAP-----YADDEEILRAAE 576 (694)
T ss_pred HHHHHHHHhcCCCC-CCceEEECCEEhhhCCHHHHHhccEEECCChhhhh-hhHHHHHhCCCC-----CCCHHHHHHHHH
Confidence 8999999 996544 78999999999987777888999999999998876 499999998642 245676655444
Q ss_pred ---h-----------h-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEE
Q psy8953 80 ---L-----------E-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVA 121 (286)
Q Consensus 80 ---l-----------~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~ 121 (286)
+ + ....+|||||| |||+||+.+...+.+.|.++.+ ++|+|+
T Consensus 577 ~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~-~~T~ii 655 (694)
T TIGR03375 577 LAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLA-GKTLVL 655 (694)
T ss_pred HcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhC-CCEEEE
Confidence 1 1 12358899999 9999999999999999999875 789999
Q ss_pred EEcCCCHHHHHHhhhHhhhcCCeeecccChhcHHHH
Q psy8953 122 TIHTPSALLFEKFDSLYALAKGHCIYRGSISRLVPH 157 (286)
Q Consensus 122 ~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 157 (286)
++|+++. + ..+|+|++|++|+++..|+.+++.+.
T Consensus 656 ItHrl~~-~-~~~D~iivl~~G~i~e~G~~~eLl~~ 689 (694)
T TIGR03375 656 VTHRTSL-L-DLVDRIIVMDNGRIVADGPKDQVLEA 689 (694)
T ss_pred EecCHHH-H-HhCCEEEEEeCCEEEeeCCHHHHHHH
Confidence 9999963 3 77999999999999999999887653
No 238
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=2.4e-20 Score=159.42 Aligned_cols=150 Identities=17% Similarity=0.141 Sum_probs=114.9
Q ss_pred Cchhhhh-cCCCC--C--CceeEEEECCeecCc--hhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHH
Q psy8953 1 MSIELNV-QSIRL--T--GSSGKILVNGQERKS--ACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQE 73 (286)
Q Consensus 1 ~stll~~-~g~~~--~--~~~G~i~~~g~~~~~--~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~ 73 (286)
||||+++ +|..+ . ..+|+|.++|+++.. .+...+++.++||+|++.+++ .||+|++.|+..... ....+.
T Consensus 43 KSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~ 119 (251)
T PRK14251 43 KSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAG--VKDKEL 119 (251)
T ss_pred HHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCCccCC-CcHHHHHHHHHHHcC--CCCHHH
Confidence 8999999 99754 2 369999999998742 122345678999999998775 799999998765311 011222
Q ss_pred HHHHHh-------h--------h-hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCE
Q psy8953 74 KKDQVS-------L--------E-LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRT 118 (286)
Q Consensus 74 ~~~~v~-------l--------~-~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~t 118 (286)
..+++. + . ....+||||+| ||++||+.++..+++.|+++.+ +.|
T Consensus 120 ~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~t 198 (251)
T PRK14251 120 IDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH-QYT 198 (251)
T ss_pred HHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc-CCe
Confidence 222221 2 1 33568899999 9999999999999999999965 689
Q ss_pred EEEEEcCCCHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 119 VVATIHTPSALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 119 ii~~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
||+++|+++. +..++|++++|++|+++..|+++++.
T Consensus 199 iiiisH~~~~-~~~~~d~i~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14251 199 FIMVTHNLQQ-AGRISDQTAFLMNGDLIEAGPTEEMF 234 (251)
T ss_pred EEEEECCHHH-HHhhcCEEEEEECCEEEEeCCHHHHH
Confidence 9999999864 66889999999999999999877653
No 239
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.83 E-value=7.2e-21 Score=158.04 Aligned_cols=140 Identities=14% Similarity=0.134 Sum_probs=112.6
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
||||+++ +|+.+. .+|+|.++|+++...+...+++.++||+|++.+++ .||+|++.+... ...+++.+..+
T Consensus 47 KSTLl~~l~Gl~~~-~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~~l~~~~~------~~~~~~~~~l~ 118 (207)
T cd03369 47 KSTLILALFRFLEA-EEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFS-GTIRSNLDPFDE------YSDEEIYGALR 118 (207)
T ss_pred HHHHHHHHhcccCC-CCCeEEECCEEhHHCCHHHHHhhEEEEecCCcccC-ccHHHHhcccCC------CCHHHHHHHhh
Confidence 8999999 997544 68999999998754333455678999999997776 599999976421 23444444444
Q ss_pred hh-hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHhhhHhh
Q psy8953 80 LE-LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVATIHTPSALLFEKFDSLYA 139 (286)
Q Consensus 80 l~-~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~~~~~~~~~~d~v~~ 139 (286)
+. ....+||||+| ||++||+.++..++++|+++. +|.|+|+++|+++. +.. +|++++
T Consensus 119 ~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~th~~~~-~~~-~d~v~~ 195 (207)
T cd03369 119 VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEF-TNSTILTIAHRLRT-IID-YDKILV 195 (207)
T ss_pred ccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHH-Hhh-CCEEEE
Confidence 44 56789999999 999999999999999999985 48999999999875 444 999999
Q ss_pred hcCCeeecccCh
Q psy8953 140 LAKGHCIYRGSI 151 (286)
Q Consensus 140 l~~G~i~~~g~~ 151 (286)
|++|+++..|++
T Consensus 196 l~~g~i~~~g~~ 207 (207)
T cd03369 196 MDAGEVKEYDHP 207 (207)
T ss_pred EECCEEEecCCC
Confidence 999999987763
No 240
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.83 E-value=1.3e-20 Score=158.23 Aligned_cols=147 Identities=18% Similarity=0.255 Sum_probs=112.4
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccC--CCCCHHHHHHHHHhcCCC-CCCCHH----
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALR--PKLTVTEAMMIASHLKLG-FKVSTQ---- 72 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~--~~~tV~e~l~f~~~~~~~-~~~~~~---- 72 (286)
||||+++ +|..+. .+|+|++||+++. ..++.++||+|++.++ +.+||.|++.++...... ...+..
T Consensus 19 KSTLl~~l~G~~~~-~~G~i~~~g~~~~-----~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~ 92 (223)
T TIGR03771 19 KTTLLRAILGLIPP-AKGTVKVAGASPG-----KGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHIGWLRRPCVADFA 92 (223)
T ss_pred HHHHHHHHhCCCCC-CCceEEECCccch-----HhhCcEEEecccccccCCCCccHHHHHHhccccccccccCCcHHHHH
Confidence 8999999 997543 6899999998763 2356799999998753 458999999986431100 111111
Q ss_pred HHHHHHh---hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcC
Q psy8953 73 EKKDQVS---LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVATIHT 125 (286)
Q Consensus 73 ~~~~~v~---l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~ 125 (286)
++.+.++ +. ....+|||||| ||++||+.++..+.+.|++++++|.|+|+++|+
T Consensus 93 ~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~tvii~sH~ 172 (223)
T TIGR03771 93 AVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHD 172 (223)
T ss_pred HHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 1222222 22 34568899999 999999999999999999998779999999999
Q ss_pred CCHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 126 PSALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 126 ~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
++ .+...+|+++++ +|++++.|+++++.
T Consensus 173 ~~-~~~~~~d~i~~l-~G~i~~~~~~~~~~ 200 (223)
T TIGR03771 173 LA-QAMATCDRVVLL-NGRVIADGTPQQLQ 200 (223)
T ss_pred HH-HHHHhCCEEEEE-CCEEEeecCHHHhc
Confidence 86 466889999999 79999999887764
No 241
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=2.4e-20 Score=162.18 Aligned_cols=150 Identities=13% Similarity=0.145 Sum_probs=115.5
Q ss_pred Cchhhhh-cCCCC--C--CceeEEEECCeecCch--hhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHH
Q psy8953 1 MSIELNV-QSIRL--T--GSSGKILVNGQERKSA--CIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQE 73 (286)
Q Consensus 1 ~stll~~-~g~~~--~--~~~G~i~~~g~~~~~~--~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~ 73 (286)
|||||++ +|+.. . ..+|+|++||+++... ....+++.+|||+|++.+++. ||.|++.|+.+.+. . .+.++
T Consensus 78 KSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~-~-~~~~~ 154 (286)
T PRK14275 78 KSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHG-I-NDKKQ 154 (286)
T ss_pred HHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcC-C-CcHHH
Confidence 8999999 99642 2 2799999999987421 112356789999999988775 99999999875321 1 11222
Q ss_pred HHHHHh-------h--------h-hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCE
Q psy8953 74 KKDQVS-------L--------E-LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRT 118 (286)
Q Consensus 74 ~~~~v~-------l--------~-~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~t 118 (286)
.++++. + . ....+||||+| ||++||+.++..+++.|++++. +.|
T Consensus 155 ~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~t 233 (286)
T PRK14275 155 LEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYT 233 (286)
T ss_pred HHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCe
Confidence 222211 1 1 34668999999 9999999999999999999976 589
Q ss_pred EEEEEcCCCHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 119 VVATIHTPSALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 119 ii~~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
||+++|+++. +..++|++++|++|+++..|+++++.
T Consensus 234 vIivsH~~~~-~~~~~d~i~~L~~G~i~~~g~~~~~~ 269 (286)
T PRK14275 234 IMIVTHNMQQ-ASRVSDYTMFFYEGVLVEHAPTAQLF 269 (286)
T ss_pred EEEEeCCHHH-HHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999864 66889999999999999999877654
No 242
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.82 E-value=2.2e-20 Score=156.59 Aligned_cols=141 Identities=26% Similarity=0.329 Sum_probs=111.8
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhh---hcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACI---EQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKD 76 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~---~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~ 76 (286)
||||+++ +|..+. .+|+|++||+++...+. ..+++.++||+|++.+++.+||.|++.|+....- ....++..+
T Consensus 44 KStLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~--~~~~~~~~~ 120 (220)
T TIGR02982 44 KTTLLTLIGGLRSV-QEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQP--NLSYQEARE 120 (220)
T ss_pred HHHHHHHHhCCCCC-CCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhcc--CCCHHHHHH
Confidence 8999999 997543 79999999998853211 2356889999999999999999999999875321 123344333
Q ss_pred HHh-------hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC-CCEEEEEEc
Q psy8953 77 QVS-------LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ-GRTVVATIH 124 (286)
Q Consensus 77 ~v~-------l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~-g~tii~~~h 124 (286)
++. +. ....+||||+| ||++||+.++..+.+.|+++.++ |.|||+++|
T Consensus 121 ~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh 200 (220)
T TIGR02982 121 RARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTH 200 (220)
T ss_pred HHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence 333 22 44568899999 99999999999999999999874 999999999
Q ss_pred CCCHHHHHHhhhHhhhcCCeee
Q psy8953 125 TPSALLFEKFDSLYALAKGHCI 146 (286)
Q Consensus 125 ~~~~~~~~~~d~v~~l~~G~i~ 146 (286)
+.+ . ..++|++++|++|+++
T Consensus 201 ~~~-~-~~~~d~v~~l~~g~~~ 220 (220)
T TIGR02982 201 DNR-I-LDVADRIVHMEDGKLL 220 (220)
T ss_pred CHH-H-HhhCCEEEEEECCEEC
Confidence 985 3 4789999999999863
No 243
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.82 E-value=1.4e-20 Score=151.93 Aligned_cols=124 Identities=25% Similarity=0.334 Sum_probs=98.5
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
||||+++ +|..+. .+|+|++||+++...+ ..+++.++||+|++.+++..||.|+++ + |.-|+ +|+.
T Consensus 39 KStLl~~l~G~~~~-~~G~i~~~g~~~~~~~-~~~~~~i~~~~q~~~~~~~~tv~~~~~------L----S~G~~-qrv~ 105 (173)
T cd03230 39 KTTLIKIILGLLKP-DSGEIKVLGKDIKKEP-EEVKRRIGYLPEEPSLYENLTVRENLK------L----SGGMK-QRLA 105 (173)
T ss_pred HHHHHHHHhCCCCC-CCeEEEECCEEcccch-HhhhccEEEEecCCccccCCcHHHHhh------c----CHHHH-HHHH
Confidence 8999999 997544 6899999999876432 345678999999999999999999986 1 22222 2221
Q ss_pred ----hh------hhhcccCCccccCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHhhhHhhhcCCee
Q psy8953 80 ----LE------LWNNFCKKKKKKKRGLDSSSCSQCVSLLANLAKQGRTVVATIHTPSALLFEKFDSLYALAKGHC 145 (286)
Q Consensus 80 ----l~------~~~~~~gG~kqptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~~~~~~~~~~d~v~~l~~G~i 145 (286)
+. ..|. ||++||+.++..+.++|++++++|.|+|+++|+++ .+..++|++++|++|++
T Consensus 106 laral~~~p~illlDE-------Pt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~-~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 106 LAQALLHDPELLILDE-------PTSGLDPESRREFWELLRELKKEGKTILLSSHILE-EAERLCDRVAILNNGRI 173 (173)
T ss_pred HHHHHHcCCCEEEEeC-------CccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEeCCCC
Confidence 00 2222 99999999999999999999888999999999986 46678999999999874
No 244
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=2.9e-20 Score=161.54 Aligned_cols=152 Identities=14% Similarity=0.110 Sum_probs=114.3
Q ss_pred Cchhhhh-cCCCCC----CceeEEEECCeecCch--hhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHH
Q psy8953 1 MSIELNV-QSIRLT----GSSGKILVNGQERKSA--CIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQE 73 (286)
Q Consensus 1 ~stll~~-~g~~~~----~~~G~i~~~g~~~~~~--~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~ 73 (286)
|||||++ +|..+. ..+|+|.++|+++... +...+++.++||+|++.+++. ||.|++.|...++.......++
T Consensus 78 KSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~ 156 (285)
T PRK14254 78 KSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQGYDGDIDER 156 (285)
T ss_pred HHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCcC-CHHHHHHHHHHHcCCcHHHHHH
Confidence 8999999 997542 4789999999987421 123456889999999988875 9999999987642110000111
Q ss_pred HHHHHh---h--------h-hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEE
Q psy8953 74 KKDQVS---L--------E-LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVAT 122 (286)
Q Consensus 74 ~~~~v~---l--------~-~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~ 122 (286)
+.+.++ + . ....+|||||| ||++||+.++..++++|++++++ .|||++
T Consensus 157 ~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~-~tiii~ 235 (285)
T PRK14254 157 VEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEE-YTVVIV 235 (285)
T ss_pred HHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcC-CEEEEE
Confidence 221121 2 1 33568999999 99999999999999999999874 799999
Q ss_pred EcCCCHHHHHHhhhHh-hhcCCeeecccChhcHH
Q psy8953 123 IHTPSALLFEKFDSLY-ALAKGHCIYRGSISRLV 155 (286)
Q Consensus 123 ~h~~~~~~~~~~d~v~-~l~~G~i~~~g~~~~~~ 155 (286)
+|+++ .+..++||++ +|++|+++..|+++++.
T Consensus 236 tH~~~-~i~~~~dri~v~l~~G~i~~~g~~~~~~ 268 (285)
T PRK14254 236 THNMQ-QAARISDKTAVFLTGGELVEFDDTDKIF 268 (285)
T ss_pred eCCHH-HHHhhcCEEEEEeeCCEEEEeCCHHHHH
Confidence 99986 4667899975 67999999999877653
No 245
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.82 E-value=1.5e-20 Score=177.59 Aligned_cols=146 Identities=23% Similarity=0.271 Sum_probs=119.1
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
||||+++ +|..+. .+|+|++||+++...+...+++.++||+|++.+|.. |++|++.+..+ ..+.+++.+..+
T Consensus 357 KSTL~~ll~g~~~~-~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~~-----~~~~~~~~~~~~ 429 (544)
T TIGR01842 357 KSTLARLIVGIWPP-TSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPG-TVAENIARFGE-----NADPEKIIEAAK 429 (544)
T ss_pred HHHHHHHHhCCCCC-CCceEEECCEehhhCCHHHHhhheEEecCCcccccc-cHHHHHhccCC-----CCCHHHHHHHHH
Confidence 8999999 997543 789999999998776567788999999999988875 99999985432 134555443222
Q ss_pred ----------h----h-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEE
Q psy8953 80 ----------L----E-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVA 121 (286)
Q Consensus 80 ----------l----~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~ 121 (286)
+ + ....+|||||| ||++||+.+..++.+.|+++...++|+|+
T Consensus 430 ~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ 509 (544)
T TIGR01842 430 LAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVV 509 (544)
T ss_pred HhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEE
Confidence 1 1 12458899999 99999999999999999999767899999
Q ss_pred EEcCCCHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 122 TIHTPSALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 122 ~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
++|+++ . ...+|++++|++|+++..|+.+++.
T Consensus 510 ith~~~-~-~~~~d~i~~l~~G~i~~~g~~~~l~ 541 (544)
T TIGR01842 510 ITHRPS-L-LGCVDKILVLQDGRIARFGERDEVL 541 (544)
T ss_pred EeCCHH-H-HHhCCEEEEEECCEEEeeCCHHHHh
Confidence 999986 3 4779999999999999999987664
No 246
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.82 E-value=9.2e-21 Score=179.95 Aligned_cols=146 Identities=21% Similarity=0.311 Sum_probs=124.6
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
||||.+. .++... .+|+|++||+++...+...+++.++||+||+.+|. -||+|+|.|+..- .+.+|+.+..+
T Consensus 368 KSTl~~LL~r~~~~-~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~-~TI~~NI~~g~~~-----at~eei~~a~k 440 (567)
T COG1132 368 KSTLIKLLLRLYDP-TSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFS-GTIRENIALGRPD-----ATDEEIEEALK 440 (567)
T ss_pred HHHHHHHHhccCCC-CCCeEEECCEehhhcCHHHHHHhccEEcccceeec-ccHHHHHhcCCCC-----CCHHHHHHHHH
Confidence 8999999 997655 89999999999998888899999999999999988 9999999999751 45677766544
Q ss_pred ----------h----h-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEE
Q psy8953 80 ----------L----E-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVA 121 (286)
Q Consensus 80 ----------l----~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~ 121 (286)
+ + ....+|||||| |||.||+.+...+.+.+.++. +++|+++
T Consensus 441 ~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~-~~rT~ii 519 (567)
T COG1132 441 LANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL-KGRTTLI 519 (567)
T ss_pred HhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh-cCCEEEE
Confidence 1 1 11247799999 999999999999999999888 5689999
Q ss_pred EEcCCCHHHHHHhhhHhhhcCCeeecccChhcHHH
Q psy8953 122 TIHTPSALLFEKFDSLYALAKGHCIYRGSISRLVP 156 (286)
Q Consensus 122 ~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 156 (286)
+.||++. + ..+|+|+||++|+++..|+++++..
T Consensus 520 IaHRlst-i-~~aD~IiVl~~G~i~e~G~h~eLl~ 552 (567)
T COG1132 520 IAHRLST-I-KNADRIIVLDNGRIVERGTHEELLA 552 (567)
T ss_pred EeccHhH-H-HhCCEEEEEECCEEEEecCHHHHHH
Confidence 9999964 4 4499999999999999999998865
No 247
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.82 E-value=2.2e-20 Score=174.97 Aligned_cols=153 Identities=12% Similarity=0.151 Sum_probs=117.2
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchh-hhcccceeeEEecCc---ccCCCCCHHHHHHHHHhcCCCC-C-CCHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSAC-IEQFLKLSCYIQQDD---ALRPKLTVTEAMMIASHLKLGF-K-VSTQE 73 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~-~~~~~~~~g~v~Q~~---~~~~~~tV~e~l~f~~~~~~~~-~-~~~~~ 73 (286)
||||+++ +|+.+...+|+|+++|+++...+ ....++.+|||+|++ .+++.+||.|++.|+....... . .+.++
T Consensus 301 KSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~ 380 (506)
T PRK13549 301 RTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAA 380 (506)
T ss_pred HHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHH
Confidence 8999999 99865336899999999875311 123356799999996 3678999999999875211100 0 12222
Q ss_pred HHHHHh-------hh------hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEE
Q psy8953 74 KKDQVS-------LE------LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVA 121 (286)
Q Consensus 74 ~~~~v~-------l~------~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~ 121 (286)
.++++. +. ...++|||||| ||++||+.++.+++++|+.++++|.|||+
T Consensus 381 ~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~ 460 (506)
T PRK13549 381 ELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIV 460 (506)
T ss_pred HHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEE
Confidence 222222 21 33578999999 99999999999999999999888999999
Q ss_pred EEcCCCHHHHHHhhhHhhhcCCeeecccChhcH
Q psy8953 122 TIHTPSALLFEKFDSLYALAKGHCIYRGSISRL 154 (286)
Q Consensus 122 ~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 154 (286)
++|+++ .+..+||++++|++|++++.|+++++
T Consensus 461 ~sHd~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 492 (506)
T PRK13549 461 ISSELP-EVLGLSDRVLVMHEGKLKGDLINHNL 492 (506)
T ss_pred ECCCHH-HHHHhCCEEEEEECCEEEEEeccccC
Confidence 999986 46688999999999999999987765
No 248
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.82 E-value=1.5e-20 Score=159.15 Aligned_cols=146 Identities=21% Similarity=0.256 Sum_probs=114.3
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
|||||++ +|..+. .+|+|.+||+++...+...+++.++||+|++.+++ .||.|++.|.... ...++..+..+
T Consensus 41 KSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~-----~~~~~~~~~~~ 113 (234)
T cd03251 41 KSTLVNLIPRFYDV-DSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFN-DTVAENIAYGRPG-----ATREEVEEAAR 113 (234)
T ss_pred HHHHHHHHhccccC-CCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeecc-ccHHHHhhccCCC-----CCHHHHHHHHH
Confidence 8999999 997543 79999999998754333455678999999998776 6999999987542 12222222111
Q ss_pred -------h-----------h-hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEE
Q psy8953 80 -------L-----------E-LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVA 121 (286)
Q Consensus 80 -------l-----------~-~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~ 121 (286)
+ . ....+||||+| ||++||+.++..+.+.|+++++ +.|||+
T Consensus 114 ~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~ 192 (234)
T cd03251 114 AANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMK-NRTTFV 192 (234)
T ss_pred HcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEE
Confidence 1 1 23568899999 9999999999999999999975 899999
Q ss_pred EEcCCCHHHHHHhhhHhhhcCCeeecccChhcHHH
Q psy8953 122 TIHTPSALLFEKFDSLYALAKGHCIYRGSISRLVP 156 (286)
Q Consensus 122 ~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 156 (286)
++|+++. +.. +|++++|++|+++..|+++++..
T Consensus 193 ~sh~~~~-~~~-~d~v~~l~~G~i~~~~~~~~~~~ 225 (234)
T cd03251 193 IAHRLST-IEN-ADRIVVLEDGKIVERGTHEELLA 225 (234)
T ss_pred EecCHHH-Hhh-CCEEEEecCCeEeeeCCHHHHHH
Confidence 9999975 444 99999999999999998877643
No 249
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.82 E-value=2e-20 Score=152.28 Aligned_cols=129 Identities=21% Similarity=0.321 Sum_probs=99.9
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchh-hhcccceeeEEecCc---ccCCCCCHHHHHHHHHhcCCCCCCCHHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSAC-IEQFLKLSCYIQQDD---ALRPKLTVTEAMMIASHLKLGFKVSTQEKK 75 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~-~~~~~~~~g~v~Q~~---~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~ 75 (286)
||||+++ +|..+. .+|+|+++|+++.... ....++.++||+|++ .+++.+||+|++.|...+ |.-++
T Consensus 39 KSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~L------S~G~~- 110 (182)
T cd03215 39 QTELAEALFGLRPP-ASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIALSSLL------SGGNQ- 110 (182)
T ss_pred HHHHHHHHhCCCCC-CCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCCCcHHHHHHHHhhc------CHHHH-
Confidence 8999999 997543 6899999999886532 123467899999995 478899999999987641 22222
Q ss_pred HHHhhh----------hhhcccCCccccCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHhhhHhhhcCCee
Q psy8953 76 DQVSLE----------LWNNFCKKKKKKKRGLDSSSCSQCVSLLANLAKQGRTVVATIHTPSALLFEKFDSLYALAKGHC 145 (286)
Q Consensus 76 ~~v~l~----------~~~~~~gG~kqptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~~~~~~~~~~d~v~~l~~G~i 145 (286)
+|+.+. ..|. ||++||+.++..++++|++++++|.|||+++|+++ .+..++|++++|++|++
T Consensus 111 qrl~la~al~~~p~llllDE-------P~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 111 QKVVLARWLARDPRVLILDE-------PTRGVDVGAKAEIYRLIRELADAGKAVLLISSELD-ELLGLCDRILVMYEGRI 182 (182)
T ss_pred HHHHHHHHHccCCCEEEECC-------CCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEecCCcC
Confidence 121100 1222 99999999999999999999877999999999986 46688999999999974
No 250
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.82 E-value=2.6e-20 Score=160.34 Aligned_cols=152 Identities=11% Similarity=0.050 Sum_probs=115.2
Q ss_pred Cchhhhh-cCCCC--C--CceeEEEECCeecCc--hhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHH
Q psy8953 1 MSIELNV-QSIRL--T--GSSGKILVNGQERKS--ACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQE 73 (286)
Q Consensus 1 ~stll~~-~g~~~--~--~~~G~i~~~g~~~~~--~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~ 73 (286)
|||||++ +|+.. . ..+|+|.++|+++.. .+...+++.+|||+|++.+++ .||.|++.|..+.+.-.....++
T Consensus 49 KSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~ 127 (264)
T PRK14243 49 KSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPNPFP-KSIYDNIAYGARINGYKGDMDEL 127 (264)
T ss_pred HHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHhhhEEEEccCCcccc-ccHHHHHHhhhhhcCcchHHHHH
Confidence 8999999 99643 1 268999999998742 112345678999999998777 49999999987642111001111
Q ss_pred HHHHHh---h--------h-hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEE
Q psy8953 74 KKDQVS---L--------E-LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVAT 122 (286)
Q Consensus 74 ~~~~v~---l--------~-~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~ 122 (286)
+.+.+. + . ....+||||+| ||++||+.++..++++|+++++ +.|||++
T Consensus 128 ~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~v 206 (264)
T PRK14243 128 VERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIV 206 (264)
T ss_pred HHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEE
Confidence 211111 1 1 33458999999 9999999999999999999976 5899999
Q ss_pred EcCCCHHHHHHhhhHhhhc---------CCeeecccChhcHH
Q psy8953 123 IHTPSALLFEKFDSLYALA---------KGHCIYRGSISRLV 155 (286)
Q Consensus 123 ~h~~~~~~~~~~d~v~~l~---------~G~i~~~g~~~~~~ 155 (286)
+|+++ .+..++|++++|+ +|++++.|+++++.
T Consensus 207 tH~~~-~~~~~~d~v~~l~~~~~~~~~~~g~i~~~~~~~~~~ 247 (264)
T PRK14243 207 THNMQ-QAARVSDMTAFFNVELTEGGGRYGYLVEFDRTEKIF 247 (264)
T ss_pred ecCHH-HHHHhCCEEEEEecccccccccCceEEEeCCHHHHH
Confidence 99986 4678999999998 89999999988775
No 251
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.82 E-value=5.6e-20 Score=157.41 Aligned_cols=151 Identities=13% Similarity=0.147 Sum_probs=115.3
Q ss_pred Cchhhhh-cCCCCC---CceeEEEECCeecCchhhhcccceeeEEecCcc--cCCCCCHHHHHHHHHhcCCCCCCCHHHH
Q psy8953 1 MSIELNV-QSIRLT---GSSGKILVNGQERKSACIEQFLKLSCYIQQDDA--LRPKLTVTEAMMIASHLKLGFKVSTQEK 74 (286)
Q Consensus 1 ~stll~~-~g~~~~---~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~--~~~~~tV~e~l~f~~~~~~~~~~~~~~~ 74 (286)
||||+++ +|..+. ..+|+|+++|+++... ...++.++||+|++. +.+..||.+++.+.+.... .....++.
T Consensus 42 KSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~--~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 118 (254)
T PRK10418 42 KSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC--ALRGRKIATIMQNPRSAFNPLHTMHTHARETCLALG-KPADDATL 118 (254)
T ss_pred HHHHHHHHhCCCCCCCCCcCCEEEECCeecccc--ccccceEEEEecCCccccCccccHHHHHHHHHHHcC-CChHHHHH
Confidence 8999999 997553 2789999999987531 223467999999985 4467899999888664211 11112222
Q ss_pred HHHHh---hh--------hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC-CCEEEEEE
Q psy8953 75 KDQVS---LE--------LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ-GRTVVATI 123 (286)
Q Consensus 75 ~~~v~---l~--------~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~-g~tii~~~ 123 (286)
.+.++ +. ....+||||+| ||++||+.++..+.++|++++++ |+|||+++
T Consensus 119 ~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~s 198 (254)
T PRK10418 119 TAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVT 198 (254)
T ss_pred HHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEe
Confidence 22222 21 23568899999 99999999999999999999875 89999999
Q ss_pred cCCCHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 124 HTPSALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 124 h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
|+++. +..++|++++|++|+++..|+++++.
T Consensus 199 H~~~~-~~~~~d~v~~l~~G~i~~~~~~~~~~ 229 (254)
T PRK10418 199 HDMGV-VARLADDVAVMSHGRIVEQGDVETLF 229 (254)
T ss_pred cCHHH-HHHhCCEEEEEECCEEEEecCHHHHh
Confidence 99864 55789999999999999999887664
No 252
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=4.7e-20 Score=158.00 Aligned_cols=151 Identities=17% Similarity=0.154 Sum_probs=116.4
Q ss_pred Cchhhhh-cCCCCC-----CceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHH
Q psy8953 1 MSIELNV-QSIRLT-----GSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEK 74 (286)
Q Consensus 1 ~stll~~-~g~~~~-----~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~ 74 (286)
||||+++ +|..+. .+.|++.++|+++...+...+++.++|++|++.+++.+||.|++.|+..... ..++++.
T Consensus 49 KSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~ 126 (257)
T PRK14246 49 KSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHG--IKEKREI 126 (257)
T ss_pred HHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcC--CCCHHHH
Confidence 8999999 997432 1347777777766433334567889999999999999999999999875321 1123343
Q ss_pred HHHHh-------h--------h-hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEE
Q psy8953 75 KDQVS-------L--------E-LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTV 119 (286)
Q Consensus 75 ~~~v~-------l--------~-~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~ti 119 (286)
.+++. + . ....+||||+| ||++||+.++..+.++|.++++ +.||
T Consensus 127 ~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~ti 205 (257)
T PRK14246 127 KKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAI 205 (257)
T ss_pred HHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEE
Confidence 33332 2 1 23457899999 9999999999999999999965 6899
Q ss_pred EEEEcCCCHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 120 VATIHTPSALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 120 i~~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
|+++|+++ .+..++|++++|++|+++..|++++..
T Consensus 206 ilvsh~~~-~~~~~~d~v~~l~~g~i~~~g~~~~~~ 240 (257)
T PRK14246 206 VIVSHNPQ-QVARVADYVAFLYNGELVEWGSSNEIF 240 (257)
T ss_pred EEEECCHH-HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 99999986 466889999999999999999887664
No 253
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.82 E-value=1.4e-20 Score=149.03 Aligned_cols=153 Identities=21% Similarity=0.315 Sum_probs=127.6
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHH----
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKK---- 75 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~---- 75 (286)
|||||-+ +.+.+. -+|+|+|+|+++..++-+++++..+..-|+...-..+||+|-++|+=-- -..+...+|-+
T Consensus 40 KSTLLS~~sRL~~~-d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~~rlTV~dLv~FGRfP-YSqGRlt~eD~~~I~ 117 (252)
T COG4604 40 KSTLLSMMSRLLKK-DSGEITIDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFP-YSQGRLTKEDRRIIN 117 (252)
T ss_pred HHHHHHHHHHhccc-cCceEEEeeeecccCChHHHHHHHHHHHhhchhhheeEHHHHhhcCCCc-ccCCCCchHHHHHHH
Confidence 8999999 665544 7999999999999888899999999999999999999999999997530 00122223322
Q ss_pred HHHh------hh--hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC-CCEEEEEEcCCC
Q psy8953 76 DQVS------LE--LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ-GRTVVATIHTPS 127 (286)
Q Consensus 76 ~~v~------l~--~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~-g~tii~~~h~~~ 127 (286)
+-++ |. +.+.+|||||| |..+||-..+.++|+.|++++++ |+|||++.|+..
T Consensus 118 ~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDIN 197 (252)
T COG4604 118 EAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDIN 197 (252)
T ss_pred HHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEeccc
Confidence 3333 33 67889999999 99999999999999999999997 999999999987
Q ss_pred HHHHHHhhhHhhhcCCeeecccChhcHHH
Q psy8953 128 ALLFEKFDSLYALAKGHCIYRGSISRLVP 156 (286)
Q Consensus 128 ~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 156 (286)
. ...+.|+++-|.+|+++..|++++++.
T Consensus 198 f-AS~YsD~IVAlK~G~vv~~G~~~eii~ 225 (252)
T COG4604 198 F-ASCYSDHIVALKNGKVVKQGSPDEIIQ 225 (252)
T ss_pred H-HHhhhhheeeecCCEEEecCCHHHhcC
Confidence 4 556799999999999999999999873
No 254
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=4.8e-20 Score=157.51 Aligned_cols=150 Identities=14% Similarity=0.140 Sum_probs=116.2
Q ss_pred Cchhhhh-cCCCC--C--CceeEEEECCeecCch--hhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHH
Q psy8953 1 MSIELNV-QSIRL--T--GSSGKILVNGQERKSA--CIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQE 73 (286)
Q Consensus 1 ~stll~~-~g~~~--~--~~~G~i~~~g~~~~~~--~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~ 73 (286)
|||||++ +|... . ..+|+|++||+++... ....+++.++||+|++.+|+. ||.|++.++..... ..+.++
T Consensus 42 KSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~~--~~~~~~ 118 (250)
T PRK14266 42 KSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIHG--EDDEDF 118 (250)
T ss_pred HHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhheEEEecCCccCcc-hHHHHHHhHHhhcC--CCCHHH
Confidence 8999999 99743 2 2689999999987531 123456789999999988875 99999998765311 112233
Q ss_pred HHHHHh-------h--------h-hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCE
Q psy8953 74 KKDQVS-------L--------E-LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRT 118 (286)
Q Consensus 74 ~~~~v~-------l--------~-~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~t 118 (286)
.++++. + . ....+||||+| ||++||+.++..+.++|+++++ +.|
T Consensus 119 ~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~t 197 (250)
T PRK14266 119 IEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKE-DYT 197 (250)
T ss_pred HHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCe
Confidence 333322 1 1 23558899999 9999999999999999999965 789
Q ss_pred EEEEEcCCCHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 119 VVATIHTPSALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 119 ii~~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
||+++|+++. +...+|++++|++|++++.|+++++.
T Consensus 198 iii~sh~~~~-~~~~~~~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14266 198 IVIVTHNMQQ-ATRVSKYTSFFLNGEIIESGLTDQIF 233 (250)
T ss_pred EEEEECCHHH-HHhhcCEEEEEECCeEEEeCCHHHHH
Confidence 9999999864 66889999999999999999987764
No 255
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.81 E-value=2.3e-20 Score=177.89 Aligned_cols=145 Identities=19% Similarity=0.302 Sum_probs=119.0
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
||||+++ +|+.+. .+|+|++||+++...+...+++.++||+||+.+|. .|++|+|.++.. ..+.+++.+..+
T Consensus 374 KSTLl~lL~gl~~p-~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~~Ni~~~~~-----~~~d~~i~~al~ 446 (588)
T PRK13657 374 KSTLINLLQRVFDP-QSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFN-RSIEDNIRVGRP-----DATDEEMRAAAE 446 (588)
T ss_pred HHHHHHHHhcCcCC-CCCEEEECCEEhhhCCHHHHHhheEEEecCccccc-ccHHHHHhcCCC-----CCCHHHHHHHHH
Confidence 8999999 997554 79999999999987777788899999999998775 599999998632 234566554322
Q ss_pred --------------hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEE
Q psy8953 80 --------------LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVA 121 (286)
Q Consensus 80 --------------l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~ 121 (286)
++ ....+|||||| |||+||+.+...+++.|+++.. ++|+|+
T Consensus 447 ~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~-~~tvIi 525 (588)
T PRK13657 447 RAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMK-GRTTFI 525 (588)
T ss_pred HhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhc-CCEEEE
Confidence 11 11348899999 9999999999999999998854 799999
Q ss_pred EEcCCCHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 122 TIHTPSALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 122 ~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
++|+++ ....+|++++|++|+++..|+.++..
T Consensus 526 itHr~~--~~~~~D~ii~l~~G~i~~~g~~~~l~ 557 (588)
T PRK13657 526 IAHRLS--TVRNADRILVFDNGRVVESGSFDELV 557 (588)
T ss_pred EEecHH--HHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999985 34779999999999999999977764
No 256
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.81 E-value=2.5e-20 Score=157.92 Aligned_cols=145 Identities=21% Similarity=0.270 Sum_probs=114.5
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHH---
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKD--- 76 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~--- 76 (286)
|||||++ +|..+. .+|+|++||+++...+...+++.++||+|++.+++ .||.|++.|+... .+.+++.+
T Consensus 40 KSTLl~~i~Gl~~~-~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~-----~~~~~~~~~~~ 112 (236)
T cd03253 40 KSTILRLLFRFYDV-SSGSILIDGQDIREVTLDSLRRAIGVVPQDTVLFN-DTIGYNIRYGRPD-----ATDEEVIEAAK 112 (236)
T ss_pred HHHHHHHHhcccCC-CCCEEEECCEEhhhCCHHHHHhhEEEECCCChhhc-chHHHHHhhcCCC-----CCHHHHHHHHH
Confidence 8999999 997653 79999999998865434556778999999998775 6999999987531 12222222
Q ss_pred HHhh----h------------hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEE
Q psy8953 77 QVSL----E------------LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVA 121 (286)
Q Consensus 77 ~v~l----~------------~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~ 121 (286)
++.+ . ....+||||+| ||++||+.++..++++|+++++ |.|||+
T Consensus 113 ~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii 191 (236)
T cd03253 113 AAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSK-GRTTIV 191 (236)
T ss_pred HcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEE
Confidence 1111 1 12468999999 9999999999999999999987 999999
Q ss_pred EEcCCCHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 122 TIHTPSALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 122 ~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
++|+++. + ..+|++++|++|++++.|++++..
T Consensus 192 ~sh~~~~-~-~~~d~~~~l~~g~i~~~~~~~~~~ 223 (236)
T cd03253 192 IAHRLST-I-VNADKIIVLKDGRIVERGTHEELL 223 (236)
T ss_pred EcCCHHH-H-HhCCEEEEEECCEEEeeCCHHHHh
Confidence 9999875 4 349999999999999998876654
No 257
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.81 E-value=3.4e-20 Score=153.11 Aligned_cols=132 Identities=20% Similarity=0.187 Sum_probs=105.3
Q ss_pred Cchhhhh-cCCC-CCCceeEEEECCeecCchhhhcc-cceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHH
Q psy8953 1 MSIELNV-QSIR-LTGSSGKILVNGQERKSACIEQF-LKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQ 77 (286)
Q Consensus 1 ~stll~~-~g~~-~~~~~G~i~~~g~~~~~~~~~~~-~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~ 77 (286)
||||+++ +|.. ....+|+|.+||+++...+.... ++.++||+|++.+++..|+++.+.-
T Consensus 39 KStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l~~------------------ 100 (200)
T cd03217 39 KSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKNADFLRY------------------ 100 (200)
T ss_pred HHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccCccHHHHHhh------------------
Confidence 8999999 9974 24588999999998865322222 3469999999999999999987711
Q ss_pred HhhhhhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHH-HhhhH
Q psy8953 78 VSLELWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVATIHTPSALLFE-KFDSL 137 (286)
Q Consensus 78 v~l~~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~~~~~~~~-~~d~v 137 (286)
....+||||+| ||++||+.++.+++++|++++++|.|||+++|+++ .+.. ++|++
T Consensus 101 ----~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~-~~~~~~~d~i 175 (200)
T cd03217 101 ----VNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQR-LLDYIKPDRV 175 (200)
T ss_pred ----ccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhhCCEE
Confidence 11245566666 99999999999999999999877899999999986 4545 79999
Q ss_pred hhhcCCeeecccChhcHHH
Q psy8953 138 YALAKGHCIYRGSISRLVP 156 (286)
Q Consensus 138 ~~l~~G~i~~~g~~~~~~~ 156 (286)
++|++|+++..|+.+ +..
T Consensus 176 ~~l~~G~i~~~~~~~-~~~ 193 (200)
T cd03217 176 HVLYDGRIVKSGDKE-LAL 193 (200)
T ss_pred EEEECCEEEEEccHH-HHh
Confidence 999999999998443 443
No 258
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.81 E-value=2.3e-20 Score=177.24 Aligned_cols=146 Identities=24% Similarity=0.343 Sum_probs=121.1
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
||||+++ +|..+. .+|+|++||+++.+.+...+++.+|||+||+.+|. .|++|++.++.. ..+.+++.+-++
T Consensus 379 KSTL~~ll~g~~~p-~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~ti~~Ni~~~~~-----~~~~~~i~~al~ 451 (574)
T PRK11160 379 KSTLLQLLTRAWDP-QQGEILLNGQPIADYSEAALRQAISVVSQRVHLFS-ATLRDNLLLAAP-----NASDEALIEVLQ 451 (574)
T ss_pred HHHHHHHHhcCCCC-CCceEEECCEEhhhCCHHHHHhheeEEcccchhhc-ccHHHHhhcCCC-----ccCHHHHHHHHH
Confidence 8999999 996544 78999999999987777888999999999998776 599999999752 235666655444
Q ss_pred ---hh-h--------------hhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEE
Q psy8953 80 ---LE-L--------------WNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVAT 122 (286)
Q Consensus 80 ---l~-~--------------~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~ 122 (286)
+. . ...+|||||| ||++||+.+...+.+.|+++.+ ++|+|++
T Consensus 452 ~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~-~~tviii 530 (574)
T PRK11160 452 QVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQ-NKTVLMI 530 (574)
T ss_pred HcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEE
Confidence 22 1 1348899999 9999999999999999999864 8999999
Q ss_pred EcCCCHHHHHHhhhHhhhcCCeeecccChhcHHH
Q psy8953 123 IHTPSALLFEKFDSLYALAKGHCIYRGSISRLVP 156 (286)
Q Consensus 123 ~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 156 (286)
.|+++. + ..+|++++|++|+++..|+.+++..
T Consensus 531 tHr~~~-~-~~~d~i~~l~~G~i~~~g~~~~l~~ 562 (574)
T PRK11160 531 THRLTG-L-EQFDRICVMDNGQIIEQGTHQELLA 562 (574)
T ss_pred ecChhH-H-HhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 999964 4 5699999999999999999887653
No 259
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.81 E-value=6.5e-20 Score=157.41 Aligned_cols=150 Identities=15% Similarity=0.179 Sum_probs=114.5
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCee-----cCchhhhc----ccceeeEEecCcc--cCCCCCHHHHHHHHHh-cCCCC
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQE-----RKSACIEQ----FLKLSCYIQQDDA--LRPKLTVTEAMMIASH-LKLGF 67 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~-----~~~~~~~~----~~~~~g~v~Q~~~--~~~~~tV~e~l~f~~~-~~~~~ 67 (286)
||||+++ +|..+. .+|+|.++|++ +...+... .++.+|||+|++. +++.+|+.|++.+... ...
T Consensus 45 KSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~-- 121 (258)
T PRK11701 45 KTTLLNALSARLAP-DAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGA-- 121 (258)
T ss_pred HHHHHHHHhCCCCC-CCCEEEECCccccccccccCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhcc--
Confidence 8999999 997543 68999999997 54321122 2457999999984 5788999999987653 111
Q ss_pred CCCHHHHHHHHh-------h-----h-hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC
Q psy8953 68 KVSTQEKKDQVS-------L-----E-LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ 115 (286)
Q Consensus 68 ~~~~~~~~~~v~-------l-----~-~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~ 115 (286)
....+..+++. + . ....+||||+| ||++||+.++.++++.|++++.+
T Consensus 122 -~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 200 (258)
T PRK11701 122 -RHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRE 200 (258)
T ss_pred -CcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh
Confidence 11222222222 2 1 34568899999 99999999999999999999875
Q ss_pred -CCEEEEEEcCCCHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 116 -GRTVVATIHTPSALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 116 -g~tii~~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
|.|||+++|+++. +..++|++++|++|++++.|+++++.
T Consensus 201 ~~~tii~isH~~~~-~~~~~d~i~~l~~g~i~~~~~~~~~~ 240 (258)
T PRK11701 201 LGLAVVIVTHDLAV-ARLLAHRLLVMKQGRVVESGLTDQVL 240 (258)
T ss_pred cCcEEEEEeCCHHH-HHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999864 55789999999999999999877654
No 260
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.81 E-value=2e-20 Score=146.06 Aligned_cols=152 Identities=20% Similarity=0.238 Sum_probs=126.1
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecC-------------chhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCC
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERK-------------SACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLG 66 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~-------------~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~ 66 (286)
|||+|.| .-+.. ...|.|.|||+.+. ..+++.++...|+|||+..+...+||.|++.=++-- .
T Consensus 45 KSTfLRCiN~LE~-P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvh-V- 121 (256)
T COG4598 45 KSTFLRCINFLEK-PSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVH-V- 121 (256)
T ss_pred hhHHHHHHHhhcC-CCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchH-h-
Confidence 8999999 66543 37899999999874 234556678899999999999999999999988841 1
Q ss_pred CCCCHHHHHHHHh-------hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC
Q psy8953 67 FKVSTQEKKDQVS-------LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ 115 (286)
Q Consensus 67 ~~~~~~~~~~~v~-------l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~ 115 (286)
.++++.|..++.+ +. ++..+||||.| |||.|||+-.-++++.+++|+++
T Consensus 122 Lg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeE 201 (256)
T COG4598 122 LGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEE 201 (256)
T ss_pred hcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHh
Confidence 3455777666555 22 55668999999 99999999999999999999999
Q ss_pred CCEEEEEEcCCCHHHHHHhhhHhhhcCCeeecccChhcHHH
Q psy8953 116 GRTVVATIHTPSALLFEKFDSLYALAKGHCIYRGSISRLVP 156 (286)
Q Consensus 116 g~tii~~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 156 (286)
|+|+++++|-... ..+...+|+.|.+|.|-..|+|++++.
T Consensus 202 grTMv~VTHEM~F-AR~Vss~v~fLh~G~iEE~G~P~qvf~ 241 (256)
T COG4598 202 GRTMVVVTHEMGF-ARDVSSHVIFLHQGKIEEEGPPEQVFG 241 (256)
T ss_pred CCeEEEEeeehhH-HHhhhhheEEeecceecccCChHHHhc
Confidence 9999999999863 457788999999999999999998864
No 261
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.81 E-value=1.1e-19 Score=155.43 Aligned_cols=152 Identities=18% Similarity=0.119 Sum_probs=114.7
Q ss_pred Cchhhhh-cCCC-CCCceeEEEECCeecCchhhhcccc-eeeEEecCcccCCCCCHHHHHHHHHhcCC---C-CCCCHHH
Q psy8953 1 MSIELNV-QSIR-LTGSSGKILVNGQERKSACIEQFLK-LSCYIQQDDALRPKLTVTEAMMIASHLKL---G-FKVSTQE 73 (286)
Q Consensus 1 ~stll~~-~g~~-~~~~~G~i~~~g~~~~~~~~~~~~~-~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~---~-~~~~~~~ 73 (286)
||||+++ +|.. ....+|+|+++|+++...+.....+ .++||+|++.+++.+|+.+.+.|.+.... . ......+
T Consensus 46 KSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 125 (252)
T CHL00131 46 KSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLE 125 (252)
T ss_pred HHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHH
Confidence 8999999 9963 2347999999999876432233333 58999999999999999999988654211 0 0111222
Q ss_pred HHHHHh-------h-----h-hhh-cccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEE
Q psy8953 74 KKDQVS-------L-----E-LWN-NFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVV 120 (286)
Q Consensus 74 ~~~~v~-------l-----~-~~~-~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii 120 (286)
..+++. + . ... .+||||+| ||++||+.++.+++++|+++++.|.|||
T Consensus 126 ~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii 205 (252)
T CHL00131 126 FLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSII 205 (252)
T ss_pred HHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 222222 2 1 223 49999999 9999999999999999999987799999
Q ss_pred EEEcCCCHHHHHH-hhhHhhhcCCeeecccChhc
Q psy8953 121 ATIHTPSALLFEK-FDSLYALAKGHCIYRGSISR 153 (286)
Q Consensus 121 ~~~h~~~~~~~~~-~d~v~~l~~G~i~~~g~~~~ 153 (286)
+++|+++. +... +|++++|++|++++.|+++.
T Consensus 206 ~~tH~~~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 238 (252)
T CHL00131 206 LITHYQRL-LDYIKPDYVHVMQNGKIIKTGDAEL 238 (252)
T ss_pred EEecCHHH-HHhhhCCEEEEEeCCEEEEecChhh
Confidence 99999864 4444 79999999999999998873
No 262
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.81 E-value=2.4e-20 Score=157.34 Aligned_cols=145 Identities=18% Similarity=0.276 Sum_probs=113.3
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHH---
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKD--- 76 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~--- 76 (286)
|||||++ +|+.+. .+|+|++||.++...+...+++.++|++|++.++.. ||.|++.|.... ...++..+
T Consensus 42 KSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~~~~~~~~~~-----~~~~~~~~~~~ 114 (229)
T cd03254 42 KTTLINLLMRFYDP-QKGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSG-TIMENIRLGRPN-----ATDEEVIEAAK 114 (229)
T ss_pred HHHHHHHHhcCcCC-CCCEEEECCEeHHHcCHHHHhhhEEEecCCchhhhh-HHHHHHhccCCC-----CCHHHHHHHHH
Confidence 8999999 997644 689999999987643334567789999999977775 999999987532 11222221
Q ss_pred HHhhh----------------hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEE
Q psy8953 77 QVSLE----------------LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVA 121 (286)
Q Consensus 77 ~v~l~----------------~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~ 121 (286)
++.+. ....+|||||| ||++||+.++..++++|++++ +|.|||+
T Consensus 115 ~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~ 193 (229)
T cd03254 115 EAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM-KGRTSII 193 (229)
T ss_pred HhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEE
Confidence 22111 13578999999 999999999999999999996 4899999
Q ss_pred EEcCCCHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 122 TIHTPSALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 122 ~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
++|+++. + ..+|++++|++|++++.|+.+++.
T Consensus 194 ~sh~~~~-~-~~~d~i~~l~~g~~~~~~~~~~~~ 225 (229)
T cd03254 194 IAHRLST-I-KNADKILVLDDGKIIEEGTHDELL 225 (229)
T ss_pred EecCHHH-H-hhCCEEEEEeCCeEEEeCCHHHHH
Confidence 9999865 4 459999999999999988876554
No 263
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.81 E-value=4e-20 Score=173.02 Aligned_cols=152 Identities=14% Similarity=0.192 Sum_probs=117.0
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhh-hcccceeeEEecCc---ccCCCCCHHHHHHHHHhcCCCC--C-CCHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACI-EQFLKLSCYIQQDD---ALRPKLTVTEAMMIASHLKLGF--K-VSTQ 72 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~-~~~~~~~g~v~Q~~---~~~~~~tV~e~l~f~~~~~~~~--~-~~~~ 72 (286)
|||||++ +|..+. .+|+|.++|+++...+. ..+++.+|||+|++ .+++.+||.|+++|........ . .+.+
T Consensus 291 KSTLl~~l~G~~~p-~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~ 369 (501)
T PRK10762 291 RTELMKVLYGALPR-TSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHA 369 (501)
T ss_pred HHHHHHHHhCCCCC-CceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHH
Confidence 8999999 997543 68999999998753211 22456799999997 4789999999999864211100 0 1222
Q ss_pred HHHHHHh-------h-h-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEE
Q psy8953 73 EKKDQVS-------L-E-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVV 120 (286)
Q Consensus 73 ~~~~~v~-------l-~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii 120 (286)
+.++++. + . ....+|||||| ||++||+.++..+.++|++++++|.|||
T Consensus 370 ~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvi 449 (501)
T PRK10762 370 DEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSII 449 (501)
T ss_pred HHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEE
Confidence 2222222 3 1 34568999999 9999999999999999999988899999
Q ss_pred EEEcCCCHHHHHHhhhHhhhcCCeeecccChhcH
Q psy8953 121 ATIHTPSALLFEKFDSLYALAKGHCIYRGSISRL 154 (286)
Q Consensus 121 ~~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 154 (286)
+++|+++ .+..++|++++|++|++++.|+++++
T Consensus 450 ivtHd~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 482 (501)
T PRK10762 450 LVSSEMP-EVLGMSDRILVMHEGRISGEFTREQA 482 (501)
T ss_pred EEcCCHH-HHHhhCCEEEEEECCEEEEEeccccC
Confidence 9999986 56788999999999999999987765
No 264
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.81 E-value=8.4e-20 Score=157.46 Aligned_cols=151 Identities=16% Similarity=0.176 Sum_probs=116.6
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhh---hcccceeeEEecCcc--cCCCCCHHHHHHHHHhcCCCCCCCHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACI---EQFLKLSCYIQQDDA--LRPKLTVTEAMMIASHLKLGFKVSTQEK 74 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~---~~~~~~~g~v~Q~~~--~~~~~tV~e~l~f~~~~~~~~~~~~~~~ 74 (286)
||||+++ +|..+. .+|+|.++|+++...+. ..+++.+|||+|++. +++..||.|++.+..+.. .....++.
T Consensus 51 KSTLl~~l~Gl~~p-~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~--~~~~~~~~ 127 (268)
T PRK10419 51 KSTLARLLVGLESP-SQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHL--LSLDKAER 127 (268)
T ss_pred HHHHHHHHhCCCCC-CCcEEEECCEeccccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhh--ccCCHHHH
Confidence 8999999 997543 79999999998754211 234678999999983 568899999998865411 11223332
Q ss_pred HHHHh-------h-----h-hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC-CCEEEE
Q psy8953 75 KDQVS-------L-----E-LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ-GRTVVA 121 (286)
Q Consensus 75 ~~~v~-------l-----~-~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~-g~tii~ 121 (286)
.+++. + . ....+||||+| ||++||+.++..++++|++++++ |.|||+
T Consensus 128 ~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii 207 (268)
T PRK10419 128 LARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLF 207 (268)
T ss_pred HHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEE
Confidence 22222 2 1 33458899999 99999999999999999999875 899999
Q ss_pred EEcCCCHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 122 TIHTPSALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 122 ~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
++|+++ .+..++|++++|++|++++.|+++++.
T Consensus 208 vsH~~~-~i~~~~d~i~~l~~G~i~~~g~~~~~~ 240 (268)
T PRK10419 208 ITHDLR-LVERFCQRVMVMDNGQIVETQPVGDKL 240 (268)
T ss_pred EECCHH-HHHHhCCEEEEEECCEEeeeCChhhcc
Confidence 999986 466789999999999999999877653
No 265
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.81 E-value=2.4e-20 Score=180.90 Aligned_cols=146 Identities=17% Similarity=0.228 Sum_probs=119.8
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
||||+++ +|+... .+|+|++||+++...+...+++.+|||+||+.+|. .|++|+|.++.. ..+.+++.+..+
T Consensus 496 KSTL~~ll~g~~~p-~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~-~ti~eNi~~~~~-----~~~~~~i~~a~~ 568 (694)
T TIGR01846 496 KSTLTKLLQRLYTP-QHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFS-RSIRDNIALCNP-----GAPFEHVIHAAK 568 (694)
T ss_pred HHHHHHHHhcCCCC-CCceEEECCEehhhCCHHHHHHhCeEEccCCeehh-hhHHHHHhcCCC-----CCCHHHHHHHHH
Confidence 8999999 996544 68999999999987767788999999999988775 599999988531 235666654333
Q ss_pred --------------hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEE
Q psy8953 80 --------------LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVA 121 (286)
Q Consensus 80 --------------l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~ 121 (286)
++ ....+|||||| ||++||+.+..++++.|+++. .++|+|+
T Consensus 569 ~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~ 647 (694)
T TIGR01846 569 LAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC-RGRTVII 647 (694)
T ss_pred HcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEE
Confidence 11 12347899999 999999999999999999985 4799999
Q ss_pred EEcCCCHHHHHHhhhHhhhcCCeeecccChhcHHH
Q psy8953 122 TIHTPSALLFEKFDSLYALAKGHCIYRGSISRLVP 156 (286)
Q Consensus 122 ~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 156 (286)
++|+++. + ..+|++++|++|+++..|+.+++.+
T Consensus 648 itH~~~~-~-~~~d~ii~l~~G~i~~~g~~~~l~~ 680 (694)
T TIGR01846 648 IAHRLST-V-RACDRIIVLEKGQIAESGRHEELLA 680 (694)
T ss_pred EeCChHH-H-HhCCEEEEEeCCEEEEeCCHHHHHH
Confidence 9999964 4 5699999999999999999887754
No 266
>KOG0057|consensus
Probab=99.81 E-value=2.5e-20 Score=167.56 Aligned_cols=145 Identities=23% Similarity=0.283 Sum_probs=122.7
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
|||+++. -++.. .+|+|+|||+++..-+...+++.+||||||- ++++-||.++|.|+. ...+.+|+.+..+
T Consensus 391 KSTilr~LlrF~d--~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~-~LFndTIl~NI~YGn-----~sas~eeV~e~~k 462 (591)
T KOG0057|consen 391 KSTILRLLLRFFD--YSGSILIDGQDIKEVSLESLRQSIGVVPQDS-VLFNDTILYNIKYGN-----PSASDEEVVEACK 462 (591)
T ss_pred HHHHHHHHHHHhc--cCCcEEECCeeHhhhChHHhhhheeEeCCcc-cccchhHHHHhhcCC-----CCcCHHHHHHHHH
Confidence 7999999 77555 7999999999998877788899999999974 566889999999987 3567888776655
Q ss_pred ----------hh---------hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEE
Q psy8953 80 ----------LE---------LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVA 121 (286)
Q Consensus 80 ----------l~---------~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~ 121 (286)
+. +-..+|||||| |||.||..+-.++++.+.. ...|+|+|+
T Consensus 463 ~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~-~~~~rTvI~ 541 (591)
T KOG0057|consen 463 RAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMD-VMSGRTVIM 541 (591)
T ss_pred HcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHH-hcCCCeEEE
Confidence 11 23347899999 9999999999999999999 445899999
Q ss_pred EEcCCCHHHHHHhhhHhhhcCCeeecccChhcHHH
Q psy8953 122 TIHTPSALLFEKFDSLYALAKGHCIYRGSISRLVP 156 (286)
Q Consensus 122 ~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 156 (286)
+.|+.+ ....||+|++|++|++...|+.++++.
T Consensus 542 IvH~l~--ll~~~DkI~~l~nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 542 IVHRLD--LLKDFDKIIVLDNGTVKEYGTHSELLA 574 (591)
T ss_pred EEecch--hHhcCCEEEEEECCeeEEeccHHHHhh
Confidence 999986 447799999999999999999998875
No 267
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=6.1e-20 Score=158.79 Aligned_cols=152 Identities=13% Similarity=0.082 Sum_probs=115.0
Q ss_pred Cchhhhh-cCCCC-C---CceeEEEECCeecCc--hhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHH
Q psy8953 1 MSIELNV-QSIRL-T---GSSGKILVNGQERKS--ACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQE 73 (286)
Q Consensus 1 ~stll~~-~g~~~-~---~~~G~i~~~g~~~~~--~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~ 73 (286)
|||||++ +|+.. . ..+|+|.++|+++.. .....+++.++||+|++.+++. ||.|++.++...+.-.....++
T Consensus 59 KSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~~~~~~~~~ 137 (274)
T PRK14265 59 KSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRANGYKGNLDEL 137 (274)
T ss_pred HHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHhhcEEEEccCCccccc-cHHHHHHhHHHhcCchHHHHHH
Confidence 8999999 99743 1 258999999998742 1123456789999999987775 9999999986532100001111
Q ss_pred HHH---HHhh--------h-hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEE
Q psy8953 74 KKD---QVSL--------E-LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVAT 122 (286)
Q Consensus 74 ~~~---~v~l--------~-~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~ 122 (286)
..+ .+.+ . ....+||||+| ||++||+.++..+.++|+++++ +.|||++
T Consensus 138 ~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~ 216 (274)
T PRK14265 138 VEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMV 216 (274)
T ss_pred HHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEE
Confidence 111 1111 1 33568999999 9999999999999999999975 6899999
Q ss_pred EcCCCHHHHHHhhhHhhhc---------CCeeecccChhcHH
Q psy8953 123 IHTPSALLFEKFDSLYALA---------KGHCIYRGSISRLV 155 (286)
Q Consensus 123 ~h~~~~~~~~~~d~v~~l~---------~G~i~~~g~~~~~~ 155 (286)
+|+++ .+..++|++++|+ +|+++..|+++++.
T Consensus 217 sH~~~-~~~~~~d~i~~l~~~~~~~~~~~G~~~~~g~~~~~~ 257 (274)
T PRK14265 217 THNMQ-QASRVADWTAFFNTEIDEYGKRRGKLVEFSPTEQMF 257 (274)
T ss_pred eCCHH-HHHHhCCEEEEEecccccccccCceEEEeCCHHHHH
Confidence 99986 4668899999997 89999999998775
No 268
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.81 E-value=3.7e-20 Score=175.74 Aligned_cols=146 Identities=20% Similarity=0.214 Sum_probs=118.9
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
||||+++ +|..+. .+|+|++||+++...+...+++.++||+|++.+|. .|++|+|.++.. ..+.+++.+..+
T Consensus 354 KSTLl~ll~g~~~p-~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~-~ti~~Ni~~~~~-----~~~~~~~~~~~~ 426 (569)
T PRK10789 354 KSTLLSLIQRHFDV-SEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFS-DTVANNIALGRP-----DATQQEIEHVAR 426 (569)
T ss_pred HHHHHHHHhcccCC-CCCEEEECCEEHhhCCHHHHHhheEEEccCCeecc-ccHHHHHhcCCC-----CCCHHHHHHHHH
Confidence 8999999 996544 78999999999877666778899999999998886 499999988642 234555544332
Q ss_pred ---h-----------h-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEE
Q psy8953 80 ---L-----------E-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVA 121 (286)
Q Consensus 80 ---l-----------~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~ 121 (286)
+ + ....+|||||| ||++||+.+...+++.|+++. .++|+|+
T Consensus 427 ~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tii~ 505 (569)
T PRK10789 427 LASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG-EGRTVII 505 (569)
T ss_pred HcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEE
Confidence 1 1 12358899999 999999999999999999985 4899999
Q ss_pred EEcCCCHHHHHHhhhHhhhcCCeeecccChhcHHH
Q psy8953 122 TIHTPSALLFEKFDSLYALAKGHCIYRGSISRLVP 156 (286)
Q Consensus 122 ~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 156 (286)
++|+++. + ..+|++++|++|+++..|+.+++.+
T Consensus 506 itH~~~~-~-~~~d~i~~l~~G~i~~~g~~~~l~~ 538 (569)
T PRK10789 506 SAHRLSA-L-TEASEILVMQHGHIAQRGNHDQLAQ 538 (569)
T ss_pred EecchhH-H-HcCCEEEEEeCCEEEEecCHHHHHH
Confidence 9999964 3 6699999999999999999877653
No 269
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.81 E-value=5.4e-20 Score=172.92 Aligned_cols=150 Identities=13% Similarity=0.192 Sum_probs=115.7
Q ss_pred Cchhhhh-cCCCCCCceeEEEEC-Cee---cCch---hhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVN-GQE---RKSA---CIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQ 72 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~-g~~---~~~~---~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~ 72 (286)
|||||++ +|..+. .+|+|.++ |.+ +... ....+++.+|||+|++.+++.+||.|++.+...++. +.+
T Consensus 323 KSTLl~~l~Gl~~p-~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~----~~~ 397 (520)
T TIGR03269 323 KTTLSKIIAGVLEP-TSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLEL----PDE 397 (520)
T ss_pred HHHHHHHHhCCCCC-CCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCC----CHH
Confidence 8999999 997643 68999996 642 2111 012235679999999988999999999998754322 222
Q ss_pred HHHHHHh-------h---------h-hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC-
Q psy8953 73 EKKDQVS-------L---------E-LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ- 115 (286)
Q Consensus 73 ~~~~~v~-------l---------~-~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~- 115 (286)
+.++++. + . ....+|||||| ||++||+.++.+++++|++++++
T Consensus 398 ~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~ 477 (520)
T TIGR03269 398 LARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEM 477 (520)
T ss_pred HHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHc
Confidence 2222222 3 1 33568999999 99999999999999999999875
Q ss_pred CCEEEEEEcCCCHHHHHHhhhHhhhcCCeeecccChhcHHH
Q psy8953 116 GRTVVATIHTPSALLFEKFDSLYALAKGHCIYRGSISRLVP 156 (286)
Q Consensus 116 g~tii~~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 156 (286)
|.|||+++|+++ .+..++|++++|++|++++.|+++++..
T Consensus 478 g~tvi~vsHd~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 517 (520)
T TIGR03269 478 EQTFIIVSHDMD-FVLDVCDRAALMRDGKIVKIGDPEEIVE 517 (520)
T ss_pred CcEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999986 4668899999999999999998877654
No 270
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.80 E-value=3.1e-20 Score=180.30 Aligned_cols=144 Identities=17% Similarity=0.210 Sum_probs=115.7
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
||||+++ +|..+. .+|+|++||+++.+.+...+++.++||+|||.+|. .|++|||.++.. ..+.+++.+..+
T Consensus 520 KSTLl~lL~gl~~p-~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~-gTIreNI~~g~~-----~~~~e~i~~al~ 592 (711)
T TIGR00958 520 KSTVAALLQNLYQP-TGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFS-GSVRENIAYGLT-----DTPDEEIMAAAK 592 (711)
T ss_pred HHHHHHHHHhccCC-CCCEEEECCEEHHhcCHHHHHhhceEEecCccccc-cCHHHHHhcCCC-----CCCHHHHHHHHH
Confidence 8999999 996544 78999999999987666788899999999998775 699999998753 234666654433
Q ss_pred --------------hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEE
Q psy8953 80 --------------LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVA 121 (286)
Q Consensus 80 --------------l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~ 121 (286)
++ ....+|||||| |||+||+.+...+.+ .. ...++|+|+
T Consensus 593 ~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~--~~~~~TvIi 669 (711)
T TIGR00958 593 AANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SR--SRASRTVLL 669 (711)
T ss_pred HcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hh--ccCCCeEEE
Confidence 11 11358899999 999999999998887 22 235899999
Q ss_pred EEcCCCHHHHHHhhhHhhhcCCeeecccChhcHHH
Q psy8953 122 TIHTPSALLFEKFDSLYALAKGHCIYRGSISRLVP 156 (286)
Q Consensus 122 ~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 156 (286)
++|+++. ...+|+|++|++|+++..|+.+++.+
T Consensus 670 ItHrl~~--i~~aD~IivL~~G~ive~Gt~~eL~~ 702 (711)
T TIGR00958 670 IAHRLST--VERADQILVLKKGSVVEMGTHKQLME 702 (711)
T ss_pred EeccHHH--HHhCCEEEEEECCEEEEeeCHHHHHh
Confidence 9999863 36799999999999999999888764
No 271
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.80 E-value=6.7e-20 Score=171.56 Aligned_cols=152 Identities=11% Similarity=0.155 Sum_probs=115.8
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCch-hhhcccceeeEEecCc---ccCCCCCHHHHHHHHHh--cCCCCCCCHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSA-CIEQFLKLSCYIQQDD---ALRPKLTVTEAMMIASH--LKLGFKVSTQE 73 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~-~~~~~~~~~g~v~Q~~---~~~~~~tV~e~l~f~~~--~~~~~~~~~~~ 73 (286)
|||||++ +|..+...+|+|.++|+++... ....+++.+|||+|++ .+++.+||+|++.|+.. .......+..+
T Consensus 299 KSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~ 378 (500)
T TIGR02633 299 RTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAA 378 (500)
T ss_pred HHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHH
Confidence 8999999 9976533689999999987531 1133457899999996 47899999999998652 11001122222
Q ss_pred HHHHHh-------hh------hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEE
Q psy8953 74 KKDQVS-------LE------LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVA 121 (286)
Q Consensus 74 ~~~~v~-------l~------~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~ 121 (286)
.++++. +. ....+|||||| ||++||+.++..++++|+.++++|.|||+
T Consensus 379 ~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii 458 (500)
T TIGR02633 379 ELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIV 458 (500)
T ss_pred HHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEE
Confidence 222222 31 23468999999 99999999999999999999888999999
Q ss_pred EEcCCCHHHHHHhhhHhhhcCCeeecccChhc
Q psy8953 122 TIHTPSALLFEKFDSLYALAKGHCIYRGSISR 153 (286)
Q Consensus 122 ~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 153 (286)
++|+++ .+..++|++++|++|++++..+..+
T Consensus 459 vsHd~~-~~~~~~d~v~~l~~G~i~~~~~~~~ 489 (500)
T TIGR02633 459 VSSELA-EVLGLSDRVLVIGEGKLKGDFVNHA 489 (500)
T ss_pred ECCCHH-HHHHhCCEEEEEECCEEEEEEcccc
Confidence 999986 4668899999999999998776543
No 272
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.80 E-value=6.2e-20 Score=153.86 Aligned_cols=139 Identities=18% Similarity=0.271 Sum_probs=108.0
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
|||||++ +|..+. .+|+|.++|+++...+...+++.++||+|++.+++ .||.|++.+.... ...++..+..+
T Consensus 43 KSTLl~~i~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~-----~~~~~~~~~l~ 115 (220)
T cd03245 43 KSTLLKLLAGLYKP-TSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFY-GTLRDNITLGAPL-----ADDERILRAAE 115 (220)
T ss_pred HHHHHHHHhcCcCC-CCCeEEECCEEhHHCCHHHHHhhEEEeCCCCcccc-chHHHHhhcCCCC-----CCHHHHHHHHH
Confidence 8999999 997543 68999999998754222345678999999998776 6999999886431 12233332222
Q ss_pred ---hh-----hh-----------hcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEE
Q psy8953 80 ---LE-----LW-----------NNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVA 121 (286)
Q Consensus 80 ---l~-----~~-----------~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~ 121 (286)
+. .. ..+||||+| ||++||+.++..++++|++++++ .|||+
T Consensus 116 ~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~ 194 (220)
T cd03245 116 LAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGD-KTLII 194 (220)
T ss_pred HcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCC-CEEEE
Confidence 21 11 479999999 99999999999999999999775 89999
Q ss_pred EEcCCCHHHHHHhhhHhhhcCCeeeccc
Q psy8953 122 TIHTPSALLFEKFDSLYALAKGHCIYRG 149 (286)
Q Consensus 122 ~~h~~~~~~~~~~d~v~~l~~G~i~~~g 149 (286)
++|+++ .+ .++|++++|++|++++.|
T Consensus 195 ~sH~~~-~~-~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 195 ITHRPS-LL-DLVDRIIVMDSGRIVADG 220 (220)
T ss_pred EeCCHH-HH-HhCCEEEEEeCCeEeecC
Confidence 999986 35 789999999999998653
No 273
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=1.5e-19 Score=155.75 Aligned_cols=149 Identities=15% Similarity=0.136 Sum_probs=114.4
Q ss_pred Cchhhhh-cCCCC--C--CceeEEEECCeecCc----hhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcC-CCCCCC
Q psy8953 1 MSIELNV-QSIRL--T--GSSGKILVNGQERKS----ACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLK-LGFKVS 70 (286)
Q Consensus 1 ~stll~~-~g~~~--~--~~~G~i~~~g~~~~~----~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~-~~~~~~ 70 (286)
|||||++ +|... . ..+|+|.++|+++.. .....+++.+||++|++.+++. ||.|++.|+.... .+ .
T Consensus 55 KSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~---~ 130 (265)
T PRK14252 55 KSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIRGVK---R 130 (265)
T ss_pred HHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHcCCC---h
Confidence 8999999 99753 2 279999999987631 1123456789999999988876 9999999886531 11 1
Q ss_pred HHHHHHHHh-------h--------h-hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC
Q psy8953 71 TQEKKDQVS-------L--------E-LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ 115 (286)
Q Consensus 71 ~~~~~~~v~-------l--------~-~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~ 115 (286)
.+..++++. + . ....+||||+| ||++||+.++..+++.|+++++
T Consensus 131 ~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~- 209 (265)
T PRK14252 131 RSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN- 209 (265)
T ss_pred HHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-
Confidence 111122221 1 1 23458899999 9999999999999999999976
Q ss_pred CCEEEEEEcCCCHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 116 GRTVVATIHTPSALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 116 g~tii~~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
+.|||+++|+++. +..++|++++|++|+++..|+.+++.
T Consensus 210 ~~tiiivth~~~~-~~~~~d~i~~l~~G~i~~~g~~~~~~ 248 (265)
T PRK14252 210 KVTILIVTHNMQQ-AARVSDYTAYMYMGELIEFGATDTIF 248 (265)
T ss_pred CCEEEEEecCHHH-HHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 6899999999864 66889999999999999999877654
No 274
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.80 E-value=4.4e-20 Score=149.01 Aligned_cols=122 Identities=20% Similarity=0.293 Sum_probs=95.4
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
|||||++ +|..+. .+|+|.+||.++...+...+++.++||+|++.+++ .||+|++ + |.-++ +|+.
T Consensus 41 KStLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~l-------L----S~G~~-qrv~ 106 (173)
T cd03246 41 KSTLARLILGLLRP-TSGRVRLDGADISQWDPNELGDHVGYLPQDDELFS-GSIAENI-------L----SGGQR-QRLG 106 (173)
T ss_pred HHHHHHHHHhccCC-CCCeEEECCEEcccCCHHHHHhheEEECCCCcccc-CcHHHHC-------c----CHHHH-HHHH
Confidence 8999999 997543 68999999998865434556788999999997777 4999998 1 22222 2222
Q ss_pred hh----------hhhcccCCccccCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHhhhHhhhcCCee
Q psy8953 80 LE----------LWNNFCKKKKKKKRGLDSSSCSQCVSLLANLAKQGRTVVATIHTPSALLFEKFDSLYALAKGHC 145 (286)
Q Consensus 80 l~----------~~~~~~gG~kqptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~~~~~~~~~~d~v~~l~~G~i 145 (286)
+. ..|. ||++||+.++.++++.|++++++|+|||+++|+++ .+ ..+|++++|++|++
T Consensus 107 la~al~~~p~~lllDE-------Pt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~-~~~d~v~~l~~G~i 173 (173)
T cd03246 107 LARALYGNPRILVLDE-------PNSHLDVEGERALNQAIAALKAAGATRIVIAHRPE-TL-ASADRILVLEDGRV 173 (173)
T ss_pred HHHHHhcCCCEEEEEC-------CccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEEECCCC
Confidence 00 2222 99999999999999999999877999999999986 44 67999999999874
No 275
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.80 E-value=2.1e-19 Score=149.15 Aligned_cols=134 Identities=24% Similarity=0.332 Sum_probs=103.6
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCch---h-hhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSA---C-IEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKK 75 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~---~-~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~ 75 (286)
||||+++ +|..+. .+|+|.++|+++... . ....++.++||+|++.+++..||+|++.|.+... ....++..
T Consensus 37 KSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~~~~~~~~~---~~~~~~~~ 112 (206)
T TIGR03608 37 KSTLLNIIGLLEKF-DSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALIENETVEENLDLGLKYK---KLSKKEKR 112 (206)
T ss_pred HHHHHHHHhcCCCC-CCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhccCCcHHHHHHHHHHhc---CCCHHHHH
Confidence 8999999 997543 689999999985421 1 1234578999999999999999999999987532 12233333
Q ss_pred HHHh-------h----h-hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEEEc
Q psy8953 76 DQVS-------L----E-LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVATIH 124 (286)
Q Consensus 76 ~~v~-------l----~-~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h 124 (286)
+++. + . ....+||||+| ||++||+.++..+.++|+++.++|.|||+++|
T Consensus 113 ~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh 192 (206)
T TIGR03608 113 EKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTH 192 (206)
T ss_pred HHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 3322 2 2 44568999999 99999999999999999999877999999999
Q ss_pred CCCHHHHHHhhhHhhh
Q psy8953 125 TPSALLFEKFDSLYAL 140 (286)
Q Consensus 125 ~~~~~~~~~~d~v~~l 140 (286)
+++ .+ ..+|++++|
T Consensus 193 ~~~-~~-~~~d~i~~l 206 (206)
T TIGR03608 193 DPE-VA-KQADRVIEL 206 (206)
T ss_pred CHH-HH-hhcCEEEeC
Confidence 986 34 679988764
No 276
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.80 E-value=6.1e-20 Score=148.85 Aligned_cols=126 Identities=28% Similarity=0.343 Sum_probs=98.9
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchh--hhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSAC--IEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQ 77 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~--~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~ 77 (286)
||||+++ +|..+. .+|+|.++|+++...+ ...+++.++|++|++.+++.+|++|++.+. + |.-+++ |
T Consensus 39 KSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~----l----S~G~~q-r 108 (178)
T cd03229 39 KSTLLRCIAGLEEP-DSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG----L----SGGQQQ-R 108 (178)
T ss_pred HHHHHHHHhCCCCC-CceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheeec----C----CHHHHH-H
Confidence 8999999 997543 6999999999876432 245678999999999999999999998765 1 222221 1
Q ss_pred Hhhh----------hhhcccCCccccCCCcchHHHHHHHHHHHHHHhC-CCEEEEEEcCCCHHHHHHhhhHhhhcCCe
Q psy8953 78 VSLE----------LWNNFCKKKKKKKRGLDSSSCSQCVSLLANLAKQ-GRTVVATIHTPSALLFEKFDSLYALAKGH 144 (286)
Q Consensus 78 v~l~----------~~~~~~gG~kqptsgLD~~~~~~~~~~l~~l~~~-g~tii~~~h~~~~~~~~~~d~v~~l~~G~ 144 (286)
+.+. ..|. ||++||+.++..++++|++++++ |.|+|+++|+++ .+.+++|++++|++|+
T Consensus 109 ~~la~al~~~p~llilDE-------P~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 109 VALARALAMDPDVLLLDE-------PTSALDPITRREVRALLKSLQAQLGITVVLVTHDLD-EAARLADRVVVLRDGK 178 (178)
T ss_pred HHHHHHHHCCCCEEEEeC-------CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeCCC
Confidence 1100 2222 99999999999999999999887 899999999986 4657899999999885
No 277
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.80 E-value=9.4e-20 Score=170.50 Aligned_cols=153 Identities=12% Similarity=0.160 Sum_probs=117.5
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCch-hhhcccceeeEEecCcc---cCCCCCHHHHHHHHHhcCC-CCC--CCHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSA-CIEQFLKLSCYIQQDDA---LRPKLTVTEAMMIASHLKL-GFK--VSTQ 72 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~-~~~~~~~~~g~v~Q~~~---~~~~~tV~e~l~f~~~~~~-~~~--~~~~ 72 (286)
|||||++ +|..+. .+|+|+++|+++... .....++.++||+|++. +++.+||.|++.|+..... +.. ....
T Consensus 292 KSTLlk~l~G~~~p-~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~ 370 (501)
T PRK11288 292 RSELMKLLYGATRR-TAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNR 370 (501)
T ss_pred HHHHHHHHcCCCcC-CCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChH
Confidence 8999999 997543 689999999987531 11234568999999973 8899999999998653211 001 0121
Q ss_pred HHHHHHh-------h-h-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEE
Q psy8953 73 EKKDQVS-------L-E-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVV 120 (286)
Q Consensus 73 ~~~~~v~-------l-~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii 120 (286)
+.++++. + . ...++|||||| ||++||+.++.+++++|++++++|.|||
T Consensus 371 ~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi 450 (501)
T PRK11288 371 WEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVL 450 (501)
T ss_pred HHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEE
Confidence 1112222 3 1 34578999999 9999999999999999999998899999
Q ss_pred EEEcCCCHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 121 ATIHTPSALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 121 ~~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
+++|+++ .+..++|++++|++|++++.|+++++.
T Consensus 451 ivsHd~~-~~~~~~d~i~~l~~g~i~~~~~~~~~~ 484 (501)
T PRK11288 451 FVSSDLP-EVLGVADRIVVMREGRIAGELAREQAT 484 (501)
T ss_pred EECCCHH-HHHhhCCEEEEEECCEEEEEEccccCC
Confidence 9999986 466889999999999999999887654
No 278
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.80 E-value=1.1e-19 Score=173.00 Aligned_cols=146 Identities=20% Similarity=0.284 Sum_probs=118.0
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
||||+++ +|..+. .+|+|++||.++...+...+++.++||+||+.+|. .|++|+|.++.. ..+.+++.+..+
T Consensus 374 KSTL~~ll~g~~~~-~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~-~ti~~Ni~~~~~-----~~~~~~~~~a~~ 446 (585)
T TIGR01192 374 KTTLINLLQRVYDP-TVGQILIDGIDINTVTRESLRKSIATVFQDAGLFN-RSIRENIRLGRE-----GATDEEVYEAAK 446 (585)
T ss_pred HHHHHHHHccCCCC-CCCEEEECCEEhhhCCHHHHHhheEEEccCCccCc-ccHHHHHhcCCC-----CCCHHHHHHHHH
Confidence 8999999 996554 78999999999876656678899999999998775 699999998642 124555443222
Q ss_pred --------------hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEE
Q psy8953 80 --------------LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVA 121 (286)
Q Consensus 80 --------------l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~ 121 (286)
++ ....+|||||| ||++||+.+...+.+.|+++.+ ++|+|+
T Consensus 447 ~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~-~~tvI~ 525 (585)
T TIGR01192 447 AAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRK-NRTTFI 525 (585)
T ss_pred HhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEE
Confidence 11 22357899999 9999999999999999998854 899999
Q ss_pred EEcCCCHHHHHHhhhHhhhcCCeeecccChhcHHH
Q psy8953 122 TIHTPSALLFEKFDSLYALAKGHCIYRGSISRLVP 156 (286)
Q Consensus 122 ~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 156 (286)
+.|+++. + ..+|++++|++|+++..|+.+++.+
T Consensus 526 isH~~~~-~-~~~d~i~~l~~G~i~~~g~~~~l~~ 558 (585)
T TIGR01192 526 IAHRLST-V-RNADLVLFLDQGRLIEKGSFQELIQ 558 (585)
T ss_pred EEcChHH-H-HcCCEEEEEECCEEEEECCHHHHHH
Confidence 9999964 4 6699999999999999999877653
No 279
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.79 E-value=6.7e-20 Score=174.34 Aligned_cols=146 Identities=20% Similarity=0.263 Sum_probs=119.5
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
||||+++ +|+... .+|+|++||.+++..+...+++.++||+|||.+|. .|++|+|.++.. ...+.+++.+-.+
T Consensus 371 KSTLl~lL~gl~~~-~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~-~Ti~~Ni~~~~~----~~~~~~~i~~~l~ 444 (571)
T TIGR02203 371 KSTLVNLIPRFYEP-DSGQILLDGHDLADYTLASLRRQVALVSQDVVLFN-DTIANNIAYGRT----EQADRAEIERALA 444 (571)
T ss_pred HHHHHHHHHhccCC-CCCeEEECCEeHHhcCHHHHHhhceEEccCccccc-ccHHHHHhcCCC----CCCCHHHHHHHHH
Confidence 8999999 996544 78999999999987666778899999999997774 499999998752 1345666655433
Q ss_pred ---h-----------h-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEE
Q psy8953 80 ---L-----------E-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVA 121 (286)
Q Consensus 80 ---l-----------~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~ 121 (286)
+ + ....+|||||| ||++||+.+...+++.|+++.. ++|+|+
T Consensus 445 ~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~-~~tiIi 523 (571)
T TIGR02203 445 AAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQ-GRTTLV 523 (571)
T ss_pred HcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhC-CCEEEE
Confidence 1 1 12347899999 9999999999999999998854 689999
Q ss_pred EEcCCCHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 122 TIHTPSALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 122 ~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
++|+++ ....+|+|++|++|+++..|+.++..
T Consensus 524 itH~~~--~~~~~D~ii~l~~g~i~~~g~~~~l~ 555 (571)
T TIGR02203 524 IAHRLS--TIEKADRIVVMDDGRIVERGTHNELL 555 (571)
T ss_pred EehhhH--HHHhCCEEEEEeCCEEEeeCCHHHHH
Confidence 999985 35779999999999999999988765
No 280
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=3.4e-19 Score=156.36 Aligned_cols=152 Identities=16% Similarity=0.161 Sum_probs=114.4
Q ss_pred Cchhhhh-cCCCC----CCceeEEEECCeecCch--hhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCC-------
Q psy8953 1 MSIELNV-QSIRL----TGSSGKILVNGQERKSA--CIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLG------- 66 (286)
Q Consensus 1 ~stll~~-~g~~~----~~~~G~i~~~g~~~~~~--~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~------- 66 (286)
|||||++ +|+.. ...+|+|.++|+++... +...+++.++||+|++.+++ .||+|++.|+.+....
T Consensus 84 KSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~ 162 (305)
T PRK14264 84 KSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQSPNPFP-KSIRENISYGPRKHGDINTGLLA 162 (305)
T ss_pred HHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHHHhhceEEEccCCcccc-ccHHHHHHhHHhhcccccccccc
Confidence 8999999 99753 24799999999987531 12345678999999998777 4999999998653110
Q ss_pred --CCCC-HHHHHHHHh-------h--------h-hhhcccCCccc-------------------cCCCcchHHHHHHHHH
Q psy8953 67 --FKVS-TQEKKDQVS-------L--------E-LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSL 108 (286)
Q Consensus 67 --~~~~-~~~~~~~v~-------l--------~-~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~ 108 (286)
...+ .++..+++. + . ....+||||+| ||++||+.++..++++
T Consensus 163 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~ 242 (305)
T PRK14264 163 RLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDL 242 (305)
T ss_pred cccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 0111 121122222 1 1 23568899999 9999999999999999
Q ss_pred HHHHHhCCCEEEEEEcCCCHHHHHHhhhH-hhhcCCeeecccChhcHH
Q psy8953 109 LANLAKQGRTVVATIHTPSALLFEKFDSL-YALAKGHCIYRGSISRLV 155 (286)
Q Consensus 109 l~~l~~~g~tii~~~h~~~~~~~~~~d~v-~~l~~G~i~~~g~~~~~~ 155 (286)
|++++++ .|||+++|+++. +..++|++ ++|++|++++.|+++++.
T Consensus 243 L~~~~~~-~tiiivtH~~~~-i~~~~d~i~~~l~~G~i~~~g~~~~~~ 288 (305)
T PRK14264 243 IEELAEE-YTVVVVTHNMQQ-AARISDQTAVFLTGGELVEYDDTDKIF 288 (305)
T ss_pred HHHHhcC-CEEEEEEcCHHH-HHHhcCEEEEEecCCEEEEeCCHHHHH
Confidence 9999874 899999999864 66889997 578999999999887664
No 281
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.79 E-value=2.6e-19 Score=153.24 Aligned_cols=153 Identities=14% Similarity=0.158 Sum_probs=112.3
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCee-----cCchhhhc----ccceeeEEecCcc--cCCCCCHHHHHHHHHh-cCC-C
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQE-----RKSACIEQ----FLKLSCYIQQDDA--LRPKLTVTEAMMIASH-LKL-G 66 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~-----~~~~~~~~----~~~~~g~v~Q~~~--~~~~~tV~e~l~f~~~-~~~-~ 66 (286)
|||||++ +|..+. .+|+|.++|++ +...+... .++.+|||+|++. .++..||.|++.+... ... .
T Consensus 42 KSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~ 120 (253)
T TIGR02323 42 KSTLLGCLAGRLAP-DHGTATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARH 120 (253)
T ss_pred HHHHHHHHhCCCCC-CCcEEEEecccccccccccCCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccc
Confidence 8999999 997654 68999999987 43221121 2457999999985 4577899999987543 111 0
Q ss_pred CCCCHHHHHHHHh---h-----h-hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC-CC
Q psy8953 67 FKVSTQEKKDQVS---L-----E-LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ-GR 117 (286)
Q Consensus 67 ~~~~~~~~~~~v~---l-----~-~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~-g~ 117 (286)
.....++..+.++ + . ....+||||+| ||++||+.++..++++|+++..+ |.
T Consensus 121 ~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~ 200 (253)
T TIGR02323 121 YGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGL 200 (253)
T ss_pred hHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCC
Confidence 0000111222122 2 1 33458899999 99999999999999999999765 99
Q ss_pred EEEEEEcCCCHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 118 TVVATIHTPSALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 118 tii~~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
|||+++|+++ .+...+|++++|++|+++..|+++++.
T Consensus 201 tii~vsH~~~-~~~~~~d~~~~l~~G~i~~~~~~~~~~ 237 (253)
T TIGR02323 201 AVIIVTHDLG-VARLLAQRLLVMQQGRVVESGLTDQVL 237 (253)
T ss_pred EEEEEeCCHH-HHHHhcCEEEEEECCEEEEECCHHHHh
Confidence 9999999986 466789999999999999999876554
No 282
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.79 E-value=9.7e-20 Score=170.84 Aligned_cols=149 Identities=15% Similarity=0.257 Sum_probs=113.2
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchh-hhcccceeeEEecCc---ccCCCCCHHHHHHHHHhcC---CCC--C-C
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSAC-IEQFLKLSCYIQQDD---ALRPKLTVTEAMMIASHLK---LGF--K-V 69 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~-~~~~~~~~g~v~Q~~---~~~~~~tV~e~l~f~~~~~---~~~--~-~ 69 (286)
|||||++ +|..+. .+|+|.++|+++...+ ....++.+|||+|++ .+++.+||.|++.|+.... ... . .
T Consensus 302 KSTLlk~i~Gl~~p-~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~ 380 (510)
T PRK09700 302 RTELMNCLFGVDKR-AGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLF 380 (510)
T ss_pred HHHHHHHHhCCCcC-CCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhcccccccccccccccccc
Confidence 8999999 997543 6899999999875321 123456799999984 4789999999999875421 100 1 0
Q ss_pred CHHHHHHHH----h---hh------hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCC
Q psy8953 70 STQEKKDQV----S---LE------LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGR 117 (286)
Q Consensus 70 ~~~~~~~~v----~---l~------~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~ 117 (286)
...+.++++ + +. ....+|||||| ||++||+.++..++++|++++++|.
T Consensus 381 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~ 460 (510)
T PRK09700 381 HEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGK 460 (510)
T ss_pred ChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCC
Confidence 111111222 2 31 33568999999 9999999999999999999988899
Q ss_pred EEEEEEcCCCHHHHHHhhhHhhhcCCeeecccCh
Q psy8953 118 TVVATIHTPSALLFEKFDSLYALAKGHCIYRGSI 151 (286)
Q Consensus 118 tii~~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~ 151 (286)
|||+++|+++ .+..++|++++|++|++++.+++
T Consensus 461 tvi~vsHd~~-~~~~~~d~i~~l~~G~i~~~~~~ 493 (510)
T PRK09700 461 VILMVSSELP-EIITVCDRIAVFCEGRLTQILTN 493 (510)
T ss_pred EEEEEcCCHH-HHHhhCCEEEEEECCEEEEEecC
Confidence 9999999986 46688999999999999988765
No 283
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.79 E-value=2.2e-19 Score=168.26 Aligned_cols=153 Identities=14% Similarity=0.202 Sum_probs=114.3
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhh-cccceeeEEecCc---ccCCCCCHHHHHHHHHhcCCCCCCCHHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIE-QFLKLSCYIQQDD---ALRPKLTVTEAMMIASHLKLGFKVSTQEKK 75 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~-~~~~~~g~v~Q~~---~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~ 75 (286)
|||||++ +|..+. .+|+|.++|+++...+.. .+++.++||+|++ .+++.+||.|++.+.............+.+
T Consensus 302 KSTLl~~i~Gl~~p-~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~ 380 (510)
T PRK15439 302 RTELAETLYGLRPA-RGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPAREN 380 (510)
T ss_pred HHHHHHHHcCCCCC-CCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHH
Confidence 8999999 997543 589999999987542222 2345799999985 378899999999753211111000111112
Q ss_pred HHHh-------hh------hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEEE
Q psy8953 76 DQVS-------LE------LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVATI 123 (286)
Q Consensus 76 ~~v~-------l~------~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~ 123 (286)
++++ +. ....+|||||| ||++||+.++..+.++|++++++|.|||+++
T Consensus 381 ~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivs 460 (510)
T PRK15439 381 AVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFIS 460 (510)
T ss_pred HHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEEC
Confidence 2222 21 33568999999 9999999999999999999988899999999
Q ss_pred cCCCHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 124 HTPSALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 124 h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
|+++ .+..+||++++|++|++++.|+++++.
T Consensus 461 Hd~~-~i~~~~d~i~~l~~G~i~~~~~~~~~~ 491 (510)
T PRK15439 461 SDLE-EIEQMADRVLVMHQGEISGALTGAAIN 491 (510)
T ss_pred CCHH-HHHHhCCEEEEEECCEEEEEEccccCC
Confidence 9996 467889999999999999998876543
No 284
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.79 E-value=1.8e-19 Score=160.73 Aligned_cols=150 Identities=19% Similarity=0.229 Sum_probs=124.3
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
||||... -|--+. .+|.|++||.+...++.+.+.+++||.+||=++|+. ||.|||+-..+ ..+++.+-+-..
T Consensus 375 KSTLaR~lvG~w~p-~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~G-TIaeNIaRf~~-----~~d~~kIieAA~ 447 (580)
T COG4618 375 KSTLARLLVGIWPP-TSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDG-TIAENIARFGE-----EADPEKVIEAAR 447 (580)
T ss_pred HHHHHHHHHccccc-CCCcEEecchhhhcCCHHHhccccCcCcccceecCC-cHHHHHHhccc-----cCCHHHHHHHHH
Confidence 8999999 995443 899999999999999999999999999998777654 89999987664 123444332221
Q ss_pred --------hh-----------hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEE
Q psy8953 80 --------LE-----------LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVA 121 (286)
Q Consensus 80 --------l~-----------~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~ 121 (286)
+. --.++|||||| |-|+||..+-..+.+.|.+++.+|.|+|+
T Consensus 448 lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvv 527 (580)
T COG4618 448 LAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVV 527 (580)
T ss_pred HcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEE
Confidence 11 12347899999 99999999999999999999999999999
Q ss_pred EEcCCCHHHHHHhhhHhhhcCCeeecccChhcHHHHHH
Q psy8953 122 TIHTPSALLFEKFDSLYALAKGHCIYRGSISRLVPHLA 159 (286)
Q Consensus 122 ~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~ 159 (286)
+.|+|+ +...+|+|++|++|++-.+|+.+++...+.
T Consensus 528 iaHRPs--~L~~~Dkilvl~~G~~~~FG~r~eVLa~~~ 563 (580)
T COG4618 528 IAHRPS--ALASVDKILVLQDGRIAAFGPREEVLAKVL 563 (580)
T ss_pred EecCHH--HHhhcceeeeecCChHHhcCCHHHHHHHhc
Confidence 999996 457799999999999999999999987543
No 285
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.79 E-value=3.6e-19 Score=170.93 Aligned_cols=149 Identities=18% Similarity=0.262 Sum_probs=120.3
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcc----cceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQF----LKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKK 75 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~----~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~ 75 (286)
||||+++ +|..+. .+|+|++||+++...+...+ ++.++||+|++.+++.+||.|++.+..... ..+.++.+
T Consensus 47 KSTLl~~i~Gl~~~-~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~~~~~ 122 (648)
T PRK10535 47 KSTLMNILGCLDKP-TSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYA---GLERKQRL 122 (648)
T ss_pred HHHHHHHHhcCCCC-CCeEEEECCEEcCcCCHHHHHHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHc---CCCHHHHH
Confidence 8999999 997654 68999999999875333332 468999999999999999999999876531 22334433
Q ss_pred HHHh-------hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEEEc
Q psy8953 76 DQVS-------LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVATIH 124 (286)
Q Consensus 76 ~~v~-------l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h 124 (286)
+++. +. ....+||||+| ||++||+.++..+.++|++++++|+|+|+++|
T Consensus 123 ~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH 202 (648)
T PRK10535 123 LRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTH 202 (648)
T ss_pred HHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECC
Confidence 3332 22 34568899999 99999999999999999999878999999999
Q ss_pred CCCHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 125 TPSALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 125 ~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
+++ .+ ..+||+++|++|+++..|+.++..
T Consensus 203 ~~~-~~-~~~d~i~~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 203 DPQ-VA-AQAERVIEIRDGEIVRNPPAQEKV 231 (648)
T ss_pred CHH-HH-HhCCEEEEEECCEEEeecCccccc
Confidence 986 34 679999999999999999988664
No 286
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.79 E-value=1.1e-19 Score=152.36 Aligned_cols=139 Identities=19% Similarity=0.173 Sum_probs=109.5
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
|||||++ +|..+. .+|+|++||.++...+...+++.++||+|++.+++ .||+|++.+... ...++..+..+
T Consensus 43 KSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~------~~~~~~~~~~~ 114 (221)
T cd03244 43 KSSLLLALFRLVEL-SSGSILIDGVDISKIGLHDLRSRISIIPQDPVLFS-GTIRSNLDPFGE------YSDEELWQALE 114 (221)
T ss_pred HHHHHHHHHcCCCC-CCCEEEECCEEhHhCCHHHHhhhEEEECCCCcccc-chHHHHhCcCCC------CCHHHHHHHHH
Confidence 8999999 997543 78999999998765444566789999999998665 599999976432 12333333222
Q ss_pred ---hh----------------hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEE
Q psy8953 80 ---LE----------------LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVA 121 (286)
Q Consensus 80 ---l~----------------~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~ 121 (286)
+. ....+||||+| ||++||+.++..++++|+++++ +.|||+
T Consensus 115 ~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~ 193 (221)
T cd03244 115 RVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFK-DCTVLT 193 (221)
T ss_pred HhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEE
Confidence 11 23468899999 9999999999999999999965 689999
Q ss_pred EEcCCCHHHHHHhhhHhhhcCCeeecccC
Q psy8953 122 TIHTPSALLFEKFDSLYALAKGHCIYRGS 150 (286)
Q Consensus 122 ~~h~~~~~~~~~~d~v~~l~~G~i~~~g~ 150 (286)
++|+++. +. .+|++++|++|++++.|+
T Consensus 194 ~sh~~~~-~~-~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 194 IAHRLDT-II-DSDRILVLDKGRVVEFDS 220 (221)
T ss_pred EeCCHHH-Hh-hCCEEEEEECCeEEecCC
Confidence 9999975 43 499999999999998775
No 287
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.79 E-value=1.1e-19 Score=172.94 Aligned_cols=145 Identities=19% Similarity=0.249 Sum_probs=117.5
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
||||+++ +|..+. .+|+|++||.++...+...+++.+|||+|||.+| +.|++|+|.++-. ..+.+++.+.++
T Consensus 379 KSTLlklL~gl~~p-~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf-~~Ti~~Ni~~~~~-----~~~~~~~~~~l~ 451 (576)
T TIGR02204 379 KSTLFQLLLRFYDP-QSGRILLDGVDLRQLDPAELRARMALVPQDPVLF-AASVMENIRYGRP-----DATDEEVEAAAR 451 (576)
T ss_pred HHHHHHHHHhccCC-CCCEEEECCEEHHhcCHHHHHHhceEEccCCccc-cccHHHHHhcCCC-----CCCHHHHHHHHH
Confidence 8999999 996554 6899999999988766677889999999998866 5599999988642 124555544333
Q ss_pred --------------hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEE
Q psy8953 80 --------------LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVA 121 (286)
Q Consensus 80 --------------l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~ 121 (286)
++ ....+|||||| |||+||+.+...+++.|+++.+ ++|+|+
T Consensus 452 ~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~-~~t~Ii 530 (576)
T TIGR02204 452 AAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMK-GRTTLI 530 (576)
T ss_pred HcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhC-CCEEEE
Confidence 11 12347899999 9999999999999999999854 799999
Q ss_pred EEcCCCHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 122 TIHTPSALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 122 ~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
++|+++. ...+|++++|++|+++..|+.++..
T Consensus 531 itH~~~~--~~~~d~vi~l~~g~~~~~g~~~~l~ 562 (576)
T TIGR02204 531 IAHRLAT--VLKADRIVVMDQGRIVAQGTHAELI 562 (576)
T ss_pred EecchHH--HHhCCEEEEEECCEEEeeecHHHHH
Confidence 9999853 3679999999999999999987764
No 288
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.79 E-value=4.8e-19 Score=151.18 Aligned_cols=153 Identities=15% Similarity=0.079 Sum_probs=112.7
Q ss_pred Cchhhhh-cCCCC-CCceeEEEECCeecCchhhhcc-cceeeEEecCcccCCCCCHHHHHHHHHh-cCC---CCCCCHHH
Q psy8953 1 MSIELNV-QSIRL-TGSSGKILVNGQERKSACIEQF-LKLSCYIQQDDALRPKLTVTEAMMIASH-LKL---GFKVSTQE 73 (286)
Q Consensus 1 ~stll~~-~g~~~-~~~~G~i~~~g~~~~~~~~~~~-~~~~g~v~Q~~~~~~~~tV~e~l~f~~~-~~~---~~~~~~~~ 73 (286)
||||+++ +|..+ ...+|+|.++|+++...+.... ++.++||+|++.+++.+|+.+.+.+..+ +.. .......+
T Consensus 40 KSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (248)
T PRK09580 40 KSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFD 119 (248)
T ss_pred HHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHH
Confidence 8999999 99752 4589999999988754222222 3579999999988888888877765432 110 00011222
Q ss_pred HHHHHh-------h-h-----hh-hcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEE
Q psy8953 74 KKDQVS-------L-E-----LW-NNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVV 120 (286)
Q Consensus 74 ~~~~v~-------l-~-----~~-~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii 120 (286)
..++++ + . .. ..+|||||| ||++||+.++..+.+.|++++..|.|||
T Consensus 120 ~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tii 199 (248)
T PRK09580 120 FQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFI 199 (248)
T ss_pred HHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 223332 1 1 11 269999999 9999999999999999999987789999
Q ss_pred EEEcCCCHHHHHH-hhhHhhhcCCeeecccChhcH
Q psy8953 121 ATIHTPSALLFEK-FDSLYALAKGHCIYRGSISRL 154 (286)
Q Consensus 121 ~~~h~~~~~~~~~-~d~v~~l~~G~i~~~g~~~~~ 154 (286)
+++|+++. +... +|++++|++|++++.|+++.+
T Consensus 200 i~sH~~~~-~~~~~~d~i~~l~~g~i~~~g~~~~~ 233 (248)
T PRK09580 200 IVTHYQRI-LDYIKPDYVHVLYQGRIVKSGDFTLV 233 (248)
T ss_pred EEeCCHHH-HHhhhCCEEEEEECCeEEEeCCHHHH
Confidence 99999864 4444 799999999999999988744
No 289
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.78 E-value=3.7e-19 Score=149.63 Aligned_cols=145 Identities=16% Similarity=0.203 Sum_probs=109.0
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
||||+++ +|..+. .+|+|.++|+++...+...+++.++||+|++.+++ .||.|++.|....... ....+++.+.++
T Consensus 46 KSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~-~~~~~~~~~~l~ 122 (225)
T PRK10247 46 KSTLLKIVASLISP-TSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFG-DTVYDNLIFPWQIRNQ-QPDPAIFLDDLE 122 (225)
T ss_pred HHHHHHHHhcccCC-CCCeEEECCEEcCcCCHHHHHhccEEEeccccccc-ccHHHHHHhHHhhcCC-ChHHHHHHHHHH
Confidence 8999999 997543 78999999998764333455678999999998876 4999999987653221 111222222222
Q ss_pred ---h-h-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC-CCEEEEEEcCCCHHH
Q psy8953 80 ---L-E-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ-GRTVVATIHTPSALL 130 (286)
Q Consensus 80 ---l-~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~-g~tii~~~h~~~~~~ 130 (286)
+ . ....+||||+| ||++||+.++..+.++|++++++ |.|||+++|+++. +
T Consensus 123 ~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~-~ 201 (225)
T PRK10247 123 RFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDE-I 201 (225)
T ss_pred HcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHH-H
Confidence 2 1 33568899999 99999999999999999999874 9999999999975 4
Q ss_pred HHHhhhHhhhc-CCeeecccC
Q psy8953 131 FEKFDSLYALA-KGHCIYRGS 150 (286)
Q Consensus 131 ~~~~d~v~~l~-~G~i~~~g~ 150 (286)
..+|++++|+ ++..+.+|.
T Consensus 202 -~~~d~i~~l~~~~~~~~~~~ 221 (225)
T PRK10247 202 -NHADKVITLQPHAGEMQEAR 221 (225)
T ss_pred -HhCCEEEEEecccchHhhhh
Confidence 4699999995 555555553
No 290
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.78 E-value=9.2e-20 Score=156.33 Aligned_cols=145 Identities=16% Similarity=0.140 Sum_probs=111.5
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHH---H
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKK---D 76 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~---~ 76 (286)
||||+++ +|+.+. .+|+|+++|+++...+...+++.++||+|++.+++ .||+|++.+... ...++.. +
T Consensus 60 KSTLl~~l~Gl~~~-~~G~i~i~g~~i~~~~~~~~~~~i~~v~q~~~l~~-~tv~~nl~~~~~------~~~~~~~~~l~ 131 (257)
T cd03288 60 KSSLSLAFFRMVDI-FDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFS-GSIRFNLDPECK------CTDDRLWEALE 131 (257)
T ss_pred HHHHHHHHHcccCC-CCCeEEECCEEhhhCCHHHHhhhEEEECCCCcccc-cHHHHhcCcCCC------CCHHHHHHHHH
Confidence 8999999 997643 78999999998865444556788999999997765 599998754321 1122222 1
Q ss_pred HHhh----h------------hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEE
Q psy8953 77 QVSL----E------------LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVA 121 (286)
Q Consensus 77 ~v~l----~------------~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~ 121 (286)
++.+ . ....+||||+| ||++||+.++..++++|+++.+ +.|||+
T Consensus 132 ~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~-~~tiii 210 (257)
T cd03288 132 IAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAFA-DRTVVT 210 (257)
T ss_pred HhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhcC-CCEEEE
Confidence 1111 1 12468899999 9999999999999999999854 899999
Q ss_pred EEcCCCHHHHHHhhhHhhhcCCeeecccChhcHHH
Q psy8953 122 TIHTPSALLFEKFDSLYALAKGHCIYRGSISRLVP 156 (286)
Q Consensus 122 ~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 156 (286)
++|+++. +.. +||+++|++|+++..|+++++..
T Consensus 211 ~sh~~~~-~~~-~dri~~l~~G~i~~~g~~~~~~~ 243 (257)
T cd03288 211 IAHRVST-ILD-ADLVLVLSRGILVECDTPENLLA 243 (257)
T ss_pred EecChHH-HHh-CCEEEEEECCEEEEeCCHHHHHh
Confidence 9999975 434 99999999999999998876643
No 291
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.78 E-value=8.1e-19 Score=152.69 Aligned_cols=152 Identities=18% Similarity=0.230 Sum_probs=130.2
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhh---hcccceeeEEecCcc--cCCCCCHHHHHHHHHhcCCCCCCCHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACI---EQFLKLSCYIQQDDA--LRPKLTVTEAMMIASHLKLGFKVSTQEK 74 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~---~~~~~~~g~v~Q~~~--~~~~~tV~e~l~f~~~~~~~~~~~~~~~ 74 (286)
||||-.. .++.+. +|+|+++|+++...+. +-+++..-.|||||. +-|.+||.+-|.=++..+-+ ..++.|+
T Consensus 326 KsTlG~allrL~~s--~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~-~ls~~eR 402 (534)
T COG4172 326 KSTLGLALLRLIPS--QGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEP-KLSAAER 402 (534)
T ss_pred cchHHHHHHhhcCc--CceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCC-CCCHHHH
Confidence 7888777 776664 4999999999975333 334689999999995 67999999999999987553 5688898
Q ss_pred HHHHh------------hh-hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC-CCEEEE
Q psy8953 75 KDQVS------------LE-LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ-GRTVVA 121 (286)
Q Consensus 75 ~~~v~------------l~-~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~-g~tii~ 121 (286)
.+||. +. ++|.+|||||| |||.||-.-+.+++.+|++|.+. |.+-+.
T Consensus 403 ~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLF 482 (534)
T COG4172 403 DQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLF 482 (534)
T ss_pred HHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEE
Confidence 88876 23 78899999999 99999999999999999999885 999999
Q ss_pred EEcCCCHHHHHHhhhHhhhcCCeeecccChhcHHH
Q psy8953 122 TIHTPSALLFEKFDSLYALAKGHCIYRGSISRLVP 156 (286)
Q Consensus 122 ~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 156 (286)
+.|+.. .+-.+||+|+||.+|+||..|+.++++.
T Consensus 483 ISHDL~-VvrAl~~~viVm~~GkiVE~G~~~~if~ 516 (534)
T COG4172 483 ISHDLA-VVRALCHRVIVMRDGKIVEQGPTEAVFA 516 (534)
T ss_pred EeccHH-HHHHhhceEEEEeCCEEeeeCCHHHHhc
Confidence 999986 5778999999999999999999888874
No 292
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.78 E-value=5.2e-19 Score=180.40 Aligned_cols=106 Identities=18% Similarity=0.299 Sum_probs=80.0
Q ss_pred CCCCCHHHHHHHHHhcCCCCCC---CHHHHHHHHh------hh------hhhcccCCccc--------------------
Q psy8953 48 RPKLTVTEAMMIASHLKLGFKV---STQEKKDQVS------LE------LWNNFCKKKKK-------------------- 92 (286)
Q Consensus 48 ~~~~tV~e~l~f~~~~~~~~~~---~~~~~~~~v~------l~------~~~~~~gG~kq-------------------- 92 (286)
+..+++.|.+.|.-++.-.... --+|+..|++ |. ...++||||+|
T Consensus 424 ~~~m~i~~l~~~~~~l~~~~~~~~~il~ei~~RL~~L~~vGL~~L~ldR~~~tLSGGE~QRV~LAraL~~~p~g~lLILD 503 (1809)
T PRK00635 424 FQQMSLQELFIFLSQLPSKSLSIEEVLQGLKSRLSILIDLGLPYLTPERALATLSGGEQERTALAKHLGAELIGITYILD 503 (1809)
T ss_pred HhcCCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccccCCCCCCchhhCCHHHHHHHHHHHHHhcCCCCcEEEEE
Confidence 3567777777776654210000 1233445544 22 34568999999
Q ss_pred -cCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHhhhHhhhc------CCeeecccChhcHH
Q psy8953 93 -KKRGLDSSSCSQCVSLLANLAKQGRTVVATIHTPSALLFEKFDSLYALA------KGHCIYRGSISRLV 155 (286)
Q Consensus 93 -ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~~~~~~~~~~d~v~~l~------~G~i~~~g~~~~~~ 155 (286)
||+|||+.++..++++|++|++.|.|||+++|+++ +...+|++++|. +|++++.|+++++.
T Consensus 504 EPTagLD~~~~~~L~~lL~~L~~~G~TVIvVeHd~~--vi~~aDrVi~L~pGag~~gG~Iv~~G~~~eil 571 (1809)
T PRK00635 504 EPSIGLHPQDTHKLINVIKKLRDQGNTVLLVEHDEQ--MISLADRIIDIGPGAGIFGGEVLFNGSPREFL 571 (1809)
T ss_pred CCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH--HHHhCCEEEEEcCCcccCCCEEEEecCHHHHh
Confidence 99999999999999999999988999999999986 458899999996 78999999988764
No 293
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.78 E-value=1.8e-19 Score=146.08 Aligned_cols=118 Identities=21% Similarity=0.301 Sum_probs=96.2
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
|||||++ +|..+. .+|+|++||+++... ...+++.++||+|++.+++ .||+|++ +.
T Consensus 41 KStLl~~l~G~~~~-~~G~i~~~g~~~~~~-~~~~~~~i~~~~q~~~~~~-~tv~~~i--------~~------------ 97 (178)
T cd03247 41 KSTLLQLLTGDLKP-QQGEITLDGVPVSDL-EKALSSLISVLNQRPYLFD-TTLRNNL--------GR------------ 97 (178)
T ss_pred HHHHHHHHhccCCC-CCCEEEECCEEHHHH-HHHHHhhEEEEccCCeeec-ccHHHhh--------cc------------
Confidence 8999999 997544 689999999987543 2345678999999997775 6999998 11
Q ss_pred hhhhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHhhhHhhh
Q psy8953 80 LELWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVATIHTPSALLFEKFDSLYAL 140 (286)
Q Consensus 80 l~~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~~~~~~~~~~d~v~~l 140 (286)
.+||||+| ||++||+.++..++++|+++. ++.|||+++|+++. + ..+|++++|
T Consensus 98 -----~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~-~-~~~d~~~~l 169 (178)
T cd03247 98 -----RFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL-KDKTLIWITHHLTG-I-EHMDKILFL 169 (178)
T ss_pred -----cCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HhCCEEEEE
Confidence 23344444 999999999999999999996 48999999999975 4 469999999
Q ss_pred cCCeeeccc
Q psy8953 141 AKGHCIYRG 149 (286)
Q Consensus 141 ~~G~i~~~g 149 (286)
++|++++.|
T Consensus 170 ~~g~i~~~~ 178 (178)
T cd03247 170 ENGKIIMQG 178 (178)
T ss_pred ECCEEEecC
Confidence 999998754
No 294
>KOG0055|consensus
Probab=99.78 E-value=1.4e-19 Score=176.70 Aligned_cols=145 Identities=17% Similarity=0.256 Sum_probs=122.8
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
|||++++ .++... .+|+|+|||.++...+.+.++..+|.|+|+| .++..|++|||.|+-+. .+++|+.+-.+
T Consensus 392 KST~i~LL~RfydP-~~G~V~idG~di~~~~~~~lr~~iglV~QeP-vlF~~tI~eNI~~G~~d-----at~~~i~~a~k 464 (1228)
T KOG0055|consen 392 KSTLIQLLARFYDP-TSGEVLIDGEDIRNLNLKWLRSQIGLVSQEP-VLFATTIRENIRYGKPD-----ATREEIEEAAK 464 (1228)
T ss_pred HHHHHHHHHHhcCC-CCceEEEcCccchhcchHHHHhhcCeeeech-hhhcccHHHHHhcCCCc-----ccHHHHHHHHH
Confidence 8999999 885433 8999999999999888888899999999999 77889999999999863 35666665443
Q ss_pred --------------hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEE
Q psy8953 80 --------------LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVA 121 (286)
Q Consensus 80 --------------l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~ 121 (286)
++ -...+|||||| |||.||+.+...+.+.|+++.. |+|.|+
T Consensus 465 ~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~-grTTiv 543 (1228)
T KOG0055|consen 465 AANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASK-GRTTIV 543 (1228)
T ss_pred HccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhc-CCeEEE
Confidence 11 12247899999 9999999999999999988766 789999
Q ss_pred EEcCCCHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 122 TIHTPSALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 122 ~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
+.||++. + ..+|++++|++|+|+..|+++|++
T Consensus 544 VaHRLSt-I-rnaD~I~v~~~G~IvE~G~h~ELi 575 (1228)
T KOG0055|consen 544 VAHRLST-I-RNADKIAVMEEGKIVEQGTHDELI 575 (1228)
T ss_pred Eeeehhh-h-hccCEEEEEECCEEEEecCHHHHH
Confidence 9999974 5 449999999999999999999985
No 295
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.78 E-value=1e-18 Score=145.88 Aligned_cols=134 Identities=17% Similarity=0.210 Sum_probs=106.1
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHH-HH---
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQE-KK--- 75 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~-~~--- 75 (286)
||||+++ +|..+. .+|+|.++|+++.. ...++.++||+|++.+++.+|+.|++.+...++. ...++ ..
T Consensus 50 KSTLl~~i~G~~~~-~~G~i~~~g~~i~~---~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~---~~~~~~~~~~l 122 (214)
T PRK13543 50 KTTLLRVLAGLLHV-ESGQIQIDGKTATR---GDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHG---RRAKQMPGSAL 122 (214)
T ss_pred HHHHHHHHhCCCCC-CCeeEEECCEEccc---hhhhhceEEeecCcccccCCcHHHHHHHHHHhcC---CcHHHHHHHHH
Confidence 8999999 997544 68999999998864 2345679999999988999999999999876421 11222 22
Q ss_pred HHHhhh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcCCCHHHH
Q psy8953 76 DQVSLE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVATIHTPSALLF 131 (286)
Q Consensus 76 ~~v~l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~~~~~~~ 131 (286)
+++.+. ....+||||+| ||++||+.++..+.++|+++.++|.|+|+++|++++ +.
T Consensus 123 ~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~-~~ 201 (214)
T PRK13543 123 AIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYA-AP 201 (214)
T ss_pred HHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhh-hh
Confidence 222222 44568999999 999999999999999999998889999999999874 66
Q ss_pred HHhhhHhhhcC
Q psy8953 132 EKFDSLYALAK 142 (286)
Q Consensus 132 ~~~d~v~~l~~ 142 (286)
+++|++++++.
T Consensus 202 ~~~~~i~~l~~ 212 (214)
T PRK13543 202 PVRTRMLTLEA 212 (214)
T ss_pred hhcceEEEEee
Confidence 88999888763
No 296
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.78 E-value=4.4e-19 Score=153.33 Aligned_cols=148 Identities=19% Similarity=0.271 Sum_probs=109.4
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCccc--CCCCCHHHHHHHHHh--cCCCCCCCHH---
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDAL--RPKLTVTEAMMIASH--LKLGFKVSTQ--- 72 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~--~~~~tV~e~l~f~~~--~~~~~~~~~~--- 72 (286)
|||||++ +|..+. .+|+|.++|+++.. ...++.++||+|++.+ ....+++|++.++.. .+. ...+..
T Consensus 46 KSTLl~~l~Gl~~p-~~G~i~~~g~~i~~---~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~ 120 (272)
T PRK15056 46 KSTLFKALMGFVRL-ASGKISILGQPTRQ---ALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGW-LRRAKKRDR 120 (272)
T ss_pred HHHHHHHHhCCCCC-CceEEEECCEEhHH---hhccceEEEeccccccccCCCcchhhheeccccccccc-ccCCCHHHH
Confidence 8999999 997543 68999999998743 2223469999999864 234578998876532 111 011111
Q ss_pred -HHHHHHh---hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEEEc
Q psy8953 73 -EKKDQVS---LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVATIH 124 (286)
Q Consensus 73 -~~~~~v~---l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h 124 (286)
...+.++ +. ....+||||+| ||++||+.++..+.++|++++++|.|||+++|
T Consensus 121 ~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH 200 (272)
T PRK15056 121 QIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTH 200 (272)
T ss_pred HHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 1222222 22 34568999999 99999999999999999999877999999999
Q ss_pred CCCHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 125 TPSALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 125 ~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
+++ .+..++|+++++ +|++++.|+++++.
T Consensus 201 ~~~-~~~~~~d~v~~~-~G~i~~~g~~~~~~ 229 (272)
T PRK15056 201 NLG-SVTEFCDYTVMV-KGTVLASGPTETTF 229 (272)
T ss_pred CHH-HHHHhCCEEEEE-CCEEEeecCHHhcc
Confidence 986 466889998766 89999999887653
No 297
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.77 E-value=2.6e-19 Score=183.92 Aligned_cols=133 Identities=17% Similarity=0.328 Sum_probs=111.0
Q ss_pred ceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh----------h----
Q psy8953 15 SSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS----------L---- 80 (286)
Q Consensus 15 ~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~----------l---- 80 (286)
.+|+|+|||+++.+.+...+++.+|||+|+|.+| ..|++|+|.|+.+ ..+.+|+.+-.+ |
T Consensus 1275 ~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF-~gTIreNI~~g~~-----~at~eeI~~A~k~A~l~~fI~~LP~Gy 1348 (1466)
T PTZ00265 1275 NSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLF-NMSIYENIKFGKE-----DATREDVKRACKFAAIDEFIESLPNKY 1348 (1466)
T ss_pred CCCeEEECCEEHHhCCHHHHHhhccEeCCCCccc-cccHHHHHhcCCC-----CCCHHHHHHHHHHcCCHHHHHhCcccc
Confidence 5999999999998877788999999999999887 7999999999843 246677665433 1
Q ss_pred h-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHh-CCCEEEEEEcCCCHHHHHHhh
Q psy8953 81 E-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAK-QGRTVVATIHTPSALLFEKFD 135 (286)
Q Consensus 81 ~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~-~g~tii~~~h~~~~~~~~~~d 135 (286)
+ ....+|||||| |||.||+.+...+.+.|+++.. .++|+|++.||++. + ..+|
T Consensus 1349 dT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlst-i-~~aD 1426 (1466)
T PTZ00265 1349 DTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIAS-I-KRSD 1426 (1466)
T ss_pred CCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHHH-H-HhCC
Confidence 1 12347899999 9999999999999999999974 58999999999963 3 6799
Q ss_pred hHhhhcC----Ceee-cccChhcHH
Q psy8953 136 SLYALAK----GHCI-YRGSISRLV 155 (286)
Q Consensus 136 ~v~~l~~----G~i~-~~g~~~~~~ 155 (286)
+|++|++ |+++ ..|+.++++
T Consensus 1427 ~Ivvl~~~~~~G~iv~e~Gth~eLl 1451 (1466)
T PTZ00265 1427 KIVVFNNPDRTGSFVQAHGTHEELL 1451 (1466)
T ss_pred EEEEEeCCCCCCCEEEEecCHHHHH
Confidence 9999999 9965 799988765
No 298
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.77 E-value=2.4e-18 Score=141.03 Aligned_cols=123 Identities=20% Similarity=0.189 Sum_probs=94.6
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCc--hhhhcccceeeEEecCcc-cCCCCCHHHHHHHHHhcCCCCCCCHHHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKS--ACIEQFLKLSCYIQQDDA-LRPKLTVTEAMMIASHLKLGFKVSTQEKKD 76 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~--~~~~~~~~~~g~v~Q~~~-~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~ 76 (286)
||||+++ +|..+. .+|+|.+||+++.. .....+++.++||+|++. .+...||+|++.|++... ..+.++..+
T Consensus 31 KSTLl~~i~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~tv~~nl~~~~~~~---~~~~~~~~~ 106 (190)
T TIGR01166 31 KSTLLLHLNGLLRP-QSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNL---GLSEAEVER 106 (190)
T ss_pred HHHHHHHHhCCCCC-CceeEEECCEEccccccchHHHHhhEEEEecChhhccccccHHHHHHHHHHHc---CCCHHHHHH
Confidence 8999999 997553 68999999998742 112345678999999984 445679999999986531 223333333
Q ss_pred HHh-------hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcC
Q psy8953 77 QVS-------LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVATIHT 125 (286)
Q Consensus 77 ~v~-------l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~ 125 (286)
++. +. ....+||||+| ||++||+.++..+.++|++++++|.|||+++|+
T Consensus 107 ~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~ 186 (190)
T TIGR01166 107 RVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMTVVISTHD 186 (190)
T ss_pred HHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeec
Confidence 322 22 34568999999 999999999999999999998789999999999
Q ss_pred CC
Q psy8953 126 PS 127 (286)
Q Consensus 126 ~~ 127 (286)
++
T Consensus 187 ~~ 188 (190)
T TIGR01166 187 VD 188 (190)
T ss_pred cc
Confidence 85
No 299
>PLN03232 ABC transporter C family member; Provisional
Probab=99.77 E-value=2.7e-19 Score=184.92 Aligned_cols=145 Identities=17% Similarity=0.172 Sum_probs=120.3
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
||||+++ .|+... .+|+|+|||.++.+.+...+++.++||+|||.+|.. |++|+|.++. ..+.+|+.+-++
T Consensus 1275 KSTL~~lL~rl~~p-~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~g-TIr~NL~~~~------~~sdeei~~al~ 1346 (1495)
T PLN03232 1275 KSSMLNALFRIVEL-EKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSG-TVRFNIDPFS------EHNDADLWEALE 1346 (1495)
T ss_pred HHHHHHHHhCCCcC-CCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCc-cHHHHcCCCC------CCCHHHHHHHHH
Confidence 8999999 996544 789999999999887778899999999999998875 9999998643 235666654333
Q ss_pred --------------hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEE
Q psy8953 80 --------------LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVA 121 (286)
Q Consensus 80 --------------l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~ 121 (286)
++ ....+|||||| |||+||+.+...+.+.|++..+ ++|+|+
T Consensus 1347 ~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~-~~TvI~ 1425 (1495)
T PLN03232 1347 RAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFK-SCTMLV 1425 (1495)
T ss_pred HcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC-CCEEEE
Confidence 11 12358899999 9999999999999999998754 799999
Q ss_pred EEcCCCHHHHHHhhhHhhhcCCeeecccChhcHHH
Q psy8953 122 TIHTPSALLFEKFDSLYALAKGHCIYRGSISRLVP 156 (286)
Q Consensus 122 ~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 156 (286)
+.||++. + ..+|+|++|++|+++..|+++++..
T Consensus 1426 IAHRl~t-i-~~~DrIlVL~~G~ivE~Gt~~eLl~ 1458 (1495)
T PLN03232 1426 IAHRLNT-I-IDCDKILVLSSGQVLEYDSPQELLS 1458 (1495)
T ss_pred EeCCHHH-H-HhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999964 4 4599999999999999999998764
No 300
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.76 E-value=2e-18 Score=142.64 Aligned_cols=132 Identities=17% Similarity=0.233 Sum_probs=104.1
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
||||+++ +|..+. .+|+|.++|+++... ...+++.++||+|++.+++.+||+|++.|..... ..+++.+.++
T Consensus 39 KSTLl~~l~G~~~~-~~G~i~~~g~~~~~~-~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~-----~~~~~~~~l~ 111 (201)
T cd03231 39 KTTLLRILAGLSPP-LAGRVLLNGGPLDFQ-RDSIARGLLYLGHAPGIKTTLSVLENLRFWHADH-----SDEQVEEALA 111 (201)
T ss_pred HHHHHHHHhCCCCC-CCcEEEECCEecccc-cHHhhhheEEeccccccCCCcCHHHHHHhhcccc-----cHHHHHHHHH
Confidence 8999999 997544 689999999987532 1345678999999999999999999999865321 2333333333
Q ss_pred ---hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHH
Q psy8953 80 ---LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVATIHTPSALLFE 132 (286)
Q Consensus 80 ---l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~~~~~~~~ 132 (286)
+. ....+||||+| ||++||+.++..+.+.|+++.++|.|+|+++|++... ..
T Consensus 112 ~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~-~~ 190 (201)
T cd03231 112 RVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGL-SE 190 (201)
T ss_pred HcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhh-hh
Confidence 32 34568999999 9999999999999999999987899999999998764 46
Q ss_pred HhhhHhhh
Q psy8953 133 KFDSLYAL 140 (286)
Q Consensus 133 ~~d~v~~l 140 (286)
.+++++++
T Consensus 191 ~~~~~~~~ 198 (201)
T cd03231 191 AGARELDL 198 (201)
T ss_pred ccceeEec
Confidence 78888765
No 301
>PLN03130 ABC transporter C family member; Provisional
Probab=99.76 E-value=5.9e-19 Score=182.86 Aligned_cols=144 Identities=17% Similarity=0.169 Sum_probs=120.4
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
||||+++ .++... .+|+|+|||.++.+.+...+++.+|||+|||.+|.. |++|+|.++-+ .+.+|+.+-.+
T Consensus 1278 KSTLl~lL~rl~~p-~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~G-TIreNLd~~~~------~tdeei~~Al~ 1349 (1622)
T PLN03130 1278 KSSMLNALFRIVEL-ERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSG-TVRFNLDPFNE------HNDADLWESLE 1349 (1622)
T ss_pred HHHHHHHHhCcCCC-CCceEEECCEecccCCHHHHHhccEEECCCCccccc-cHHHHhCcCCC------CCHHHHHHHHH
Confidence 8999999 986544 689999999999987788999999999999998876 99999987532 35666654333
Q ss_pred --------------hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEE
Q psy8953 80 --------------LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVA 121 (286)
Q Consensus 80 --------------l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~ 121 (286)
++ ....+|||||| |||+||+.+...+.+.|+++.+ ++|+|+
T Consensus 1350 ~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~-~~TvI~ 1428 (1622)
T PLN03130 1350 RAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLI 1428 (1622)
T ss_pred HcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC-CCEEEE
Confidence 11 12358899999 9999999999999999998854 799999
Q ss_pred EEcCCCHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 122 TIHTPSALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 122 ~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
+.||++. + ..+|+|+||++|+++..|+++++.
T Consensus 1429 IAHRL~t-I-~~~DrIlVLd~G~IvE~Gt~~eLl 1460 (1622)
T PLN03130 1429 IAHRLNT-I-IDCDRILVLDAGRVVEFDTPENLL 1460 (1622)
T ss_pred EeCChHH-H-HhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999974 4 459999999999999999999876
No 302
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.76 E-value=4e-18 Score=146.41 Aligned_cols=138 Identities=16% Similarity=0.162 Sum_probs=111.1
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
||||+++ +|..+. .+|+|.++|+ ++|++|++.+.+.+||.|++.+..... ..+.++..+.+.
T Consensus 63 KSTLlk~L~Gl~~p-~~G~I~~~g~-------------~~~~~~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~ 125 (264)
T PRK13546 63 KSTLSNIIGGSLSP-TVGKVDRNGE-------------VSVIAISAGLSGQLTGIENIEFKMLCM---GFKRKEIKAMTP 125 (264)
T ss_pred HHHHHHHHhCCcCC-CceEEEECCE-------------EeEEecccCCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHH
Confidence 7999999 997543 6899999985 356788877778899999999876532 223444433322
Q ss_pred -------hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcCCCH
Q psy8953 80 -------LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVATIHTPSA 128 (286)
Q Consensus 80 -------l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~~~~ 128 (286)
+. ....+||||+| ||++||+.++..+++.|.++++.|.|||+++|+++
T Consensus 126 ~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~- 204 (264)
T PRK13546 126 KIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLG- 204 (264)
T ss_pred HHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-
Confidence 21 34568999999 99999999999999999999877999999999986
Q ss_pred HHHHHhhhHhhhcCCeeecccChhcHHH
Q psy8953 129 LLFEKFDSLYALAKGHCIYRGSISRLVP 156 (286)
Q Consensus 129 ~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 156 (286)
.+..++|++++|++|++++.|+++++..
T Consensus 205 ~i~~~~d~i~~l~~G~i~~~g~~~~~~~ 232 (264)
T PRK13546 205 QVRQFCTKIAWIEGGKLKDYGELDDVLP 232 (264)
T ss_pred HHHHHcCEEEEEECCEEEEeCCHHHHHH
Confidence 4668899999999999999999877654
No 303
>PTZ00243 ABC transporter; Provisional
Probab=99.76 E-value=6.2e-19 Score=182.36 Aligned_cols=145 Identities=20% Similarity=0.202 Sum_probs=120.4
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
||||+++ .|+... .+|+|+|||.++...+.+.+++.+|||+|||.+|.. ||+|||.... ..+.+|+.+-++
T Consensus 1349 KSTLl~lLlrl~~p-~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~g-TIreNIdp~~------~~sdeeI~~Al~ 1420 (1560)
T PTZ00243 1349 KSTLLLTFMRMVEV-CGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDG-TVRQNVDPFL------EASSAEVWAALE 1420 (1560)
T ss_pred HHHHHHHHhCCCCC-CCcEEEECCEEcccCCHHHHHhcceEECCCCccccc-cHHHHhCccc------CCCHHHHHHHHH
Confidence 8999999 886554 689999999999887778999999999999998865 9999996422 345677665444
Q ss_pred ---h-----------h-----hhhcccCCccc--------------------cCCCcchHHHHHHHHHHHHHHhCCCEEE
Q psy8953 80 ---L-----------E-----LWNNFCKKKKK--------------------KKRGLDSSSCSQCVSLLANLAKQGRTVV 120 (286)
Q Consensus 80 ---l-----------~-----~~~~~~gG~kq--------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii 120 (286)
+ + ....+|||||| |||+||+.+...+.+.|++..+ ++|+|
T Consensus 1421 ~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~-~~TvI 1499 (1560)
T PTZ00243 1421 LVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFS-AYTVI 1499 (1560)
T ss_pred HCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHCC-CCEEE
Confidence 1 1 12358899999 9999999999999999998643 78999
Q ss_pred EEEcCCCHHHHHHhhhHhhhcCCeeecccChhcHHH
Q psy8953 121 ATIHTPSALLFEKFDSLYALAKGHCIYRGSISRLVP 156 (286)
Q Consensus 121 ~~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 156 (286)
++.|+++. + ..+|+|++|++|+|+..|+++++..
T Consensus 1500 ~IAHRl~t-i-~~~DrIlVLd~G~VvE~Gt~~eLl~ 1533 (1560)
T PTZ00243 1500 TIAHRLHT-V-AQYDKIIVMDHGAVAEMGSPRELVM 1533 (1560)
T ss_pred EEeccHHH-H-HhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999963 4 5699999999999999999998764
No 304
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.76 E-value=2.4e-18 Score=142.53 Aligned_cols=135 Identities=16% Similarity=0.217 Sum_probs=102.8
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
||||+++ +|..+. .+|+|.++|+++.... ..+++.++||+|++.+++.+||.|++.|..+..-. ...+++.+.++
T Consensus 40 KSTLl~~l~G~~~p-~~G~v~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~--~~~~~~~~~l~ 115 (204)
T PRK13538 40 KTSLLRILAGLARP-DAGEVLWQGEPIRRQR-DEYHQDLLYLGHQPGIKTELTALENLRFYQRLHGP--GDDEALWEALA 115 (204)
T ss_pred HHHHHHHHhCCCCC-CCcEEEECCEEcccch-HHhhhheEEeCCccccCcCCcHHHHHHHHHHhcCc--cHHHHHHHHHH
Confidence 8999999 997554 6899999999875321 23467899999999899999999999998764211 12233333333
Q ss_pred ---hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHH
Q psy8953 80 ---LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVATIHTPSALLFE 132 (286)
Q Consensus 80 ---l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~~~~~~~~ 132 (286)
+. ....+||||+| ||++||+.++..++++|++++++|.|||+++|+++. +..
T Consensus 116 ~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~-i~~ 194 (204)
T PRK13538 116 QVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLP-VAS 194 (204)
T ss_pred HcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhh-hcc
Confidence 22 44568999999 999999999999999999998778999999999875 434
Q ss_pred HhhhHhhh
Q psy8953 133 KFDSLYAL 140 (286)
Q Consensus 133 ~~d~v~~l 140 (286)
+.+|++.+
T Consensus 195 ~~~~~~~~ 202 (204)
T PRK13538 195 DKVRKLRL 202 (204)
T ss_pred CCceEEec
Confidence 44555444
No 305
>KOG0058|consensus
Probab=99.76 E-value=7.1e-19 Score=163.26 Aligned_cols=146 Identities=18% Similarity=0.213 Sum_probs=121.6
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
|||+.+. -.+... .+|+|++||+|+.+.+..-+++.+|+|.|+|.+|. -||+|||+|+.+ +.+.||+.+-.+
T Consensus 507 KSTiasLL~rfY~P-tsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs-~sI~eNI~YG~~-----~~t~e~i~~AAk 579 (716)
T KOG0058|consen 507 KSTIASLLLRFYDP-TSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFS-GSIRENIAYGLD-----NATDEEIEAAAK 579 (716)
T ss_pred HHHHHHHHHHhcCC-CCCeEEECCeehhhcCHHHHHHHeeeeeccceeec-ccHHHHHhcCCC-----CCCHHHHHHHHH
Confidence 7898888 553322 79999999999988777888999999999998874 589999999997 356777775444
Q ss_pred ----------hh---------hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEE
Q psy8953 80 ----------LE---------LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVA 121 (286)
Q Consensus 80 ----------l~---------~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~ 121 (286)
+. .--.+|||||| .||-||+++-..+-..|.++.++ +|+|+
T Consensus 580 ~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~-rTVlv 658 (716)
T KOG0058|consen 580 MANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQG-RTVLV 658 (716)
T ss_pred HhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcC-CeEEE
Confidence 11 11247799999 89999999999999999999874 99999
Q ss_pred EEcCCCHHHHHHhhhHhhhcCCeeecccChhcHHH
Q psy8953 122 TIHTPSALLFEKFDSLYALAKGHCIYRGSISRLVP 156 (286)
Q Consensus 122 ~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 156 (286)
+.||++. + ..+|+|+|+++|+++..|+.++++.
T Consensus 659 IAHRLST-V-~~Ad~Ivvi~~G~V~E~G~h~eLl~ 691 (716)
T KOG0058|consen 659 IAHRLST-V-RHADQIVVIDKGRVVEMGTHDELLS 691 (716)
T ss_pred EehhhhH-h-hhccEEEEEcCCeEEecccHHHHhh
Confidence 9999974 4 7799999999999999998887764
No 306
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.76 E-value=1.9e-19 Score=151.53 Aligned_cols=135 Identities=17% Similarity=0.209 Sum_probs=103.8
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHH----
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKK---- 75 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~---- 75 (286)
||||+++ +|..+. .+|+|.++|+++.......+++.++||+|++.+++ .||+|++.|+.+.. ...+..
T Consensus 53 KSTLl~~l~Gl~~~-~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~~nl~~~~~~~-----~~~~~~~~~~ 125 (226)
T cd03248 53 KSTVVALLENFYQP-QGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFA-RSLQDNIAYGLQSC-----SFECVKEAAQ 125 (226)
T ss_pred HHHHHHHHhcCcCC-CCcEEEECCCchHHcCHHHHHhhEEEEecccHHHh-hhHHHHhccccCCC-----CHHHHHHHHH
Confidence 8999999 997543 68999999998754333445678999999997765 69999999875421 111111
Q ss_pred --------HHH--h----hh-hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEE
Q psy8953 76 --------DQV--S----LE-LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVA 121 (286)
Q Consensus 76 --------~~v--~----l~-~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~ 121 (286)
+++ . +. ....+||||+| ||++||+.++..+.+.|+++++ +.|||+
T Consensus 126 ~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~ 204 (226)
T cd03248 126 KAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPE-RRTVLV 204 (226)
T ss_pred HcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEE
Confidence 111 1 11 34568899999 9999999999999999999976 689999
Q ss_pred EEcCCCHHHHHHhhhHhhhcCCee
Q psy8953 122 TIHTPSALLFEKFDSLYALAKGHC 145 (286)
Q Consensus 122 ~~h~~~~~~~~~~d~v~~l~~G~i 145 (286)
++|+++. + ..+|++++|++|++
T Consensus 205 ~sh~~~~-~-~~~d~i~~l~~g~i 226 (226)
T cd03248 205 IAHRLST-V-ERADQILVLDGGRI 226 (226)
T ss_pred EECCHHH-H-HhCCEEEEecCCcC
Confidence 9999975 4 45999999999874
No 307
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=5.5e-19 Score=158.83 Aligned_cols=146 Identities=23% Similarity=0.275 Sum_probs=120.2
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
||||++. +|.-.. .+|+|.+||.++...+-+++++.++++.|...+| ..|+++||..+.. ..+.||+.+..+
T Consensus 377 KSTllqLl~~~~~~-~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF-~~Tlr~NL~lA~~-----~AsDEel~~aL~ 449 (573)
T COG4987 377 KSTLLQLLAGAWDP-QQGSITLNGVEIASLDEQALRETISVLTQRVHLF-SGTLRDNLRLANP-----DASDEELWAALQ 449 (573)
T ss_pred HHHHHHHHHhccCC-CCCeeeECCcChhhCChhhHHHHHhhhccchHHH-HHHHHHHHhhcCC-----CCCHHHHHHHHH
Confidence 8999999 984333 7999999999998765566888999999987655 5689999998874 256777665433
Q ss_pred ---hh----------------hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEE
Q psy8953 80 ---LE----------------LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVA 121 (286)
Q Consensus 80 ---l~----------------~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~ 121 (286)
|+ --..+||||+| ||.|||+.+.++++..|..-.+ |+|+|+
T Consensus 450 qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~-~kTll~ 528 (573)
T COG4987 450 QVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE-GKTLLM 528 (573)
T ss_pred HcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhc-CCeEEE
Confidence 22 12347899999 9999999999999999988766 899999
Q ss_pred EEcCCCHHHHHHhhhHhhhcCCeeecccChhcHHH
Q psy8953 122 TIHTPSALLFEKFDSLYALAKGHCIYRGSISRLVP 156 (286)
Q Consensus 122 ~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 156 (286)
++|+... .+.||+|++|++|+++..|..+++..
T Consensus 529 vTHrL~~--le~~drIivl~~Gkiie~G~~~~Ll~ 561 (573)
T COG4987 529 VTHRLRG--LERMDRIIVLDNGKIIEEGTHAELLA 561 (573)
T ss_pred Eeccccc--HhhcCEEEEEECCeeeecCCHHhhhc
Confidence 9999874 37799999999999999999988764
No 308
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.75 E-value=2.7e-18 Score=144.34 Aligned_cols=135 Identities=19% Similarity=0.225 Sum_probs=100.5
Q ss_pred Cchhhhh-cCCCCCCceeEEEEC--Ce--ecCchhhhc---c-cceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVN--GQ--ERKSACIEQ---F-LKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVST 71 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~--g~--~~~~~~~~~---~-~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~ 71 (286)
||||+++ +|..+. .+|+|.++ |+ ++...+... . ++.+|||+|++.+++.+||+|++.|.+... +...
T Consensus 47 KSTLl~~i~G~~~~-~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~ 122 (224)
T TIGR02324 47 KSTLLKSLYANYLP-DSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLER---GVPR 122 (224)
T ss_pred HHHHHHHHhCCCCC-CCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHc---CCCH
Confidence 8999999 997543 68999998 43 332211111 2 357999999999999999999999976531 1222
Q ss_pred HHHHHHHh-------hh------hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEE
Q psy8953 72 QEKKDQVS-------LE------LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTV 119 (286)
Q Consensus 72 ~~~~~~v~-------l~------~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~ti 119 (286)
++..+++. +. ....+||||+| ||++||+.++..+.+.|++++++|.||
T Consensus 123 ~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~ti 202 (224)
T TIGR02324 123 EAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAAL 202 (224)
T ss_pred HHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEE
Confidence 33222222 21 23558899999 999999999999999999998779999
Q ss_pred EEEEcCCCHHHHHHhhhHhhh
Q psy8953 120 VATIHTPSALLFEKFDSLYAL 140 (286)
Q Consensus 120 i~~~h~~~~~~~~~~d~v~~l 140 (286)
|+++|+++ .+...+|+++.+
T Consensus 203 i~vsH~~~-~~~~~~d~i~~~ 222 (224)
T TIGR02324 203 IGIFHDEE-VRELVADRVMDV 222 (224)
T ss_pred EEEeCCHH-HHHHhcceeEec
Confidence 99999965 455779998765
No 309
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.75 E-value=1.9e-18 Score=142.50 Aligned_cols=123 Identities=17% Similarity=0.240 Sum_probs=96.9
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHH-
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQV- 78 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v- 78 (286)
||||+++ +|..+. .+|+|.++|+++.... ..+++.++|++|++.+++.+||.|++.|.....-. ..+.+.+.+
T Consensus 39 KSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~-~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~---~~~~~~~~l~ 113 (198)
T TIGR01189 39 KTTLLRILAGLLRP-DSGEVRWNGTALAEQR-DEPHRNILYLGHLPGLKPELSALENLHFWAAIHGG---AQRTIEDALA 113 (198)
T ss_pred HHHHHHHHhCCCCC-CccEEEECCEEcccch-HHhhhheEEeccCcccccCCcHHHHHHHHHHHcCC---cHHHHHHHHH
Confidence 8999999 997543 6899999999875432 23467899999998888999999999998764211 122222222
Q ss_pred --hhh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcCCCH
Q psy8953 79 --SLE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVATIHTPSA 128 (286)
Q Consensus 79 --~l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~~~~ 128 (286)
.+. ....+|||||| ||++||+.++..++++|++++++|.|||+++|++.+
T Consensus 114 ~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~ 189 (198)
T TIGR01189 114 AVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLG 189 (198)
T ss_pred HcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccccc
Confidence 222 45678999999 999999999999999999998789999999999865
No 310
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.75 E-value=2.4e-18 Score=132.29 Aligned_cols=150 Identities=21% Similarity=0.272 Sum_probs=117.8
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecC------chhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERK------SACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQE 73 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~------~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~ 73 (286)
||||+.+ .=+ ...-+|++-|.|...+ ...+..+++.+|+|||+-.+.|.+||-|++.=++- +. .+++.++
T Consensus 41 kssllr~lnll-e~p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqqy~lwphltv~enlieap~-kv-~gl~~~q 117 (242)
T COG4161 41 KSSLLRVLNLL-EMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPC-RV-LGLSKDQ 117 (242)
T ss_pred hHHHHHHHHHH-hCCCCCeEEecccccccccCccHHHHHHHHHhhhhhhhhhccCchhHHHHHHHhhhH-HH-hCCCHHH
Confidence 7889888 543 2337888888876553 13455668999999999999999999999998874 11 3445666
Q ss_pred HHHHHh-------hh-hh----hcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEE
Q psy8953 74 KKDQVS-------LE-LW----NNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVAT 122 (286)
Q Consensus 74 ~~~~v~-------l~-~~----~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~ 122 (286)
.+.+.. |. .. --+||||.| ||+.|||+-..++.+++++|++.|+|=+++
T Consensus 118 a~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqviv 197 (242)
T COG4161 118 ALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIV 197 (242)
T ss_pred HHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEE
Confidence 554433 33 23 347899998 999999999999999999999999999999
Q ss_pred EcCCCHHHHHHhhhHhhhcCCeeecccChhcH
Q psy8953 123 IHTPSALLFEKFDSLYALAKGHCIYRGSISRL 154 (286)
Q Consensus 123 ~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 154 (286)
+|..+. ....+.+|++|.+|+|+..|+...+
T Consensus 198 thev~v-a~k~as~vvyme~g~ive~g~a~~f 228 (242)
T COG4161 198 THEVEV-ARKTASRVVYMENGHIVEQGDASCF 228 (242)
T ss_pred EeehhH-HHhhhhheEeeecCeeEeecchhhc
Confidence 999863 5577999999999999999986543
No 311
>KOG0059|consensus
Probab=99.75 E-value=4.2e-18 Score=168.12 Aligned_cols=151 Identities=20% Similarity=0.238 Sum_probs=128.6
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCch-hhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSA-CIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQV 78 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~-~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v 78 (286)
|||++++ .|.... .+|+++++|+++... ...+..+.+||+||.|.+.+.+|.+|++.|.+++ +++++.++++.|
T Consensus 604 KtT~f~mltG~~~~-t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arl---rG~~~~di~~~v 679 (885)
T KOG0059|consen 604 KTTTFKMLTGETKP-TSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTGREHLEFYARL---RGLPRSDIGSAI 679 (885)
T ss_pred chhhHHHHhCCccC-CcceEEEecCccccccchhhhhhhcccCCchhhhhhhccHHHHHHHHHHH---cCCChhHHHHHH
Confidence 8999999 995544 899999999998642 1233678999999999999999999999999997 445677776666
Q ss_pred h-------hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcCCC
Q psy8953 79 S-------LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVATIHTPS 127 (286)
Q Consensus 79 ~-------l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~~~ 127 (286)
+ |. ...++|||+|+ ||+|+||.+++.++++++++.++|..||++.|..+
T Consensus 680 ~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMe 759 (885)
T KOG0059|consen 680 EKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSME 759 (885)
T ss_pred HHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHH
Confidence 6 22 23457899999 99999999999999999999998789999999997
Q ss_pred HHHHHHhhhHhhhcCCeeecccChhcHHH
Q psy8953 128 ALLFEKFDSLYALAKGHCIYRGSISRLVP 156 (286)
Q Consensus 128 ~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 156 (286)
+ .-.+|||+.+|.+|++.+-|++.++..
T Consensus 760 E-~EaLCtR~aImv~G~l~ciGs~q~LKs 787 (885)
T KOG0059|consen 760 E-AEALCTRTAIMVIGQLRCIGSPQELKS 787 (885)
T ss_pred H-HHHHhhhhheeecCeeEEecChHHHHh
Confidence 4 668899999999999999999998874
No 312
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.75 E-value=1.1e-18 Score=180.66 Aligned_cols=144 Identities=17% Similarity=0.151 Sum_probs=119.9
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHH-HHHhcCCCCCCCHHHHHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMM-IASHLKLGFKVSTQEKKDQV 78 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~-f~~~~~~~~~~~~~~~~~~v 78 (286)
||||+++ .++... .+|+|+|||.++.+.+...+++.++||+|||.+|.. |++|+|. |+ ..+.+|+.+-.
T Consensus 1325 KSTL~~lL~rl~~~-~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~g-TIr~NLdp~~-------~~sdeei~~al 1395 (1522)
T TIGR00957 1325 KSSLTLGLFRINES-AEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSG-SLRMNLDPFS-------QYSDEEVWWAL 1395 (1522)
T ss_pred HHHHHHHHhcCccC-CCCeEEECCEEccccCHHHHHhcCeEECCCCcccCc-cHHHHcCccc-------CCCHHHHHHHH
Confidence 8999999 986544 689999999999988888999999999999999976 9999997 32 23567765433
Q ss_pred h--------------hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEE
Q psy8953 79 S--------------LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVV 120 (286)
Q Consensus 79 ~--------------l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii 120 (286)
+ |+ ....+|||||| |||+||+.+...+.+.|++..+ ++|+|
T Consensus 1396 ~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~-~~TvI 1474 (1522)
T TIGR00957 1396 ELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFE-DCTVL 1474 (1522)
T ss_pred HHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcC-CCEEE
Confidence 3 12 11357899999 9999999999999999988644 78999
Q ss_pred EEEcCCCHHHHHHhhhHhhhcCCeeecccChhcHHH
Q psy8953 121 ATIHTPSALLFEKFDSLYALAKGHCIYRGSISRLVP 156 (286)
Q Consensus 121 ~~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 156 (286)
++.||++. + ..+|+|+||++|+|+..|+++++..
T Consensus 1475 ~IAHRl~t-i-~~~DrIlVld~G~IvE~G~~~eLl~ 1508 (1522)
T TIGR00957 1475 TIAHRLNT-I-MDYTRVIVLDKGEVAEFGAPSNLLQ 1508 (1522)
T ss_pred EEecCHHH-H-HhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999964 4 4599999999999999999998764
No 313
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.74 E-value=1.8e-18 Score=178.65 Aligned_cols=144 Identities=17% Similarity=0.122 Sum_probs=119.4
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
||||+++ .|+.+ .+|+|+|||.++...+...+++.++||+|||.+|.. ||+|+|.... ..+.+++.+-.+
T Consensus 1258 KSTLl~lL~rl~~--~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~G-TIR~NLdp~~------~~tdeei~~aL~ 1328 (1490)
T TIGR01271 1258 KSTLLSALLRLLS--TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSG-TFRKNLDPYE------QWSDEEIWKVAE 1328 (1490)
T ss_pred HHHHHHHHhhhcC--CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCcc-CHHHHhCccc------CCCHHHHHHHHH
Confidence 8999999 99765 689999999999887778899999999999999975 9999996432 235666554333
Q ss_pred ---h-----------h-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEE
Q psy8953 80 ---L-----------E-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVA 121 (286)
Q Consensus 80 ---l-----------~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~ 121 (286)
| + ....+|||||| |||+||+.+...+.+.|++..+ ++|||+
T Consensus 1329 ~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~-~~TvI~ 1407 (1490)
T TIGR01271 1329 EVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFS-NCTVIL 1407 (1490)
T ss_pred HCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEE
Confidence 1 1 11257899999 9999999999999999998754 789999
Q ss_pred EEcCCCHHHHHHhhhHhhhcCCeeecccChhcHHH
Q psy8953 122 TIHTPSALLFEKFDSLYALAKGHCIYRGSISRLVP 156 (286)
Q Consensus 122 ~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 156 (286)
+.||++. + ..+|+|++|++|+|+..|++.++..
T Consensus 1408 IaHRl~t-i-~~~DrIlvL~~G~ivE~g~p~~Ll~ 1440 (1490)
T TIGR01271 1408 SEHRVEA-L-LECQQFLVIEGSSVKQYDSIQKLLN 1440 (1490)
T ss_pred EecCHHH-H-HhCCEEEEEECCEEEEeCCHHHHHc
Confidence 9999964 4 4599999999999999999988763
No 314
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.74 E-value=8e-18 Score=171.86 Aligned_cols=107 Identities=16% Similarity=0.219 Sum_probs=84.3
Q ss_pred CCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh------hh------hhhcccCCccc----------------------c
Q psy8953 48 RPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS------LE------LWNNFCKKKKK----------------------K 93 (286)
Q Consensus 48 ~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~------l~------~~~~~~gG~kq----------------------p 93 (286)
+...||.|.|.++..-..+...+.+++.++++ |. ...++||||+| |
T Consensus 760 ~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEP 839 (1809)
T PRK00635 760 YKGKNIADILEMTAYEAEKFFLDEPSIHEKIHALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEP 839 (1809)
T ss_pred cCCCCHHHHHHcCHHHHHHcccChHHHHHHHHHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCC
Confidence 45679999998887522122233455555555 21 33568899999 9
Q ss_pred CCCcchHHHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHhhhHhhhc------CCeeecccChhcHHH
Q psy8953 94 KRGLDSSSCSQCVSLLANLAKQGRTVVATIHTPSALLFEKFDSLYALA------KGHCIYRGSISRLVP 156 (286)
Q Consensus 94 tsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~~~~~~~~~~d~v~~l~------~G~i~~~g~~~~~~~ 156 (286)
|+|||+.++..++++|+++++.|.|||+++|+++. + ..+|++++|. +|++++.|+++++..
T Consensus 840 TsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~-i-~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~~ 906 (1809)
T PRK00635 840 TTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHV-V-KVADYVLELGPEGGNLGGYLLASCSPEELIH 906 (1809)
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-H-HhCCEEEEEccCCCCCCCEEEEeCCHHHHHh
Confidence 99999999999999999999889999999999964 5 7899999995 789999999988753
No 315
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.74 E-value=9.7e-18 Score=138.48 Aligned_cols=131 Identities=19% Similarity=0.239 Sum_probs=101.0
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
||||+++ +|+.+. .+|+|+++|+++... ...+++.++||+|++.+++.+||.|++.|..... . ....+.+.++
T Consensus 40 KSTLl~~i~G~~~~-~~G~v~~~g~~~~~~-~~~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~~--~--~~~~~~~~l~ 113 (200)
T PRK13540 40 KTTLLKLIAGLLNP-EKGEILFERQSIKKD-LCTYQKQLCFVGHRSGINPYLTLRENCLYDIHFS--P--GAVGITELCR 113 (200)
T ss_pred HHHHHHHHhcCCCC-CCeeEEECCCccccC-HHHHHhheEEeccccccCcCCCHHHHHHHHHhcC--c--chHHHHHHHH
Confidence 8999999 997544 789999999987531 1345678999999998889999999999986421 1 1222233332
Q ss_pred ---hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHH
Q psy8953 80 ---LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVATIHTPSALLFE 132 (286)
Q Consensus 80 ---l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~~~~~~~~ 132 (286)
+. ....+||||+| ||++||+.++..+.+.|++++++|.|||+++|+++. ..
T Consensus 114 ~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~--~~ 191 (200)
T PRK13540 114 LFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLP--LN 191 (200)
T ss_pred HcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchh--cc
Confidence 21 33568999999 999999999999999999998789999999999753 35
Q ss_pred HhhhHhh
Q psy8953 133 KFDSLYA 139 (286)
Q Consensus 133 ~~d~v~~ 139 (286)
.+|..++
T Consensus 192 ~~d~~~~ 198 (200)
T PRK13540 192 KADYEEY 198 (200)
T ss_pred ccchhhc
Confidence 5776554
No 316
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.74 E-value=8.7e-18 Score=141.16 Aligned_cols=132 Identities=25% Similarity=0.340 Sum_probs=101.0
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
||||+++ +|..+. .+|+|++||+++.. . .+...+++.+||+|++.+.++.. ..+.++.++++.
T Consensus 61 KSTLl~~l~G~~~p-~~G~i~~~g~~~~~-----~-------~~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~ 124 (224)
T cd03220 61 KSTLLRLLAGIYPP-DSGTVTVRGRVSSL-----L-------GLGGGFNPELTGRENIYLNGRLL---GLSRKEIDEKID 124 (224)
T ss_pred HHHHHHHHhCCCCC-CceEEEECCEEchh-----h-------cccccCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHH
Confidence 8999999 997543 78999999987531 1 11223457899999999987632 122333333222
Q ss_pred -------h----h-hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcCCCH
Q psy8953 80 -------L----E-LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVATIHTPSA 128 (286)
Q Consensus 80 -------l----~-~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~~~~ 128 (286)
+ . ....+|||||| ||++||+.++.++++.|++++++|.|||+++|+++
T Consensus 125 ~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~- 203 (224)
T cd03220 125 EIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPS- 203 (224)
T ss_pred HHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-
Confidence 2 1 34568899999 99999999999999999999877899999999986
Q ss_pred HHHHHhhhHhhhcCCeeeccc
Q psy8953 129 LLFEKFDSLYALAKGHCIYRG 149 (286)
Q Consensus 129 ~~~~~~d~v~~l~~G~i~~~g 149 (286)
.+..++|++++|++|++++.|
T Consensus 204 ~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 204 SIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred HHHHhCCEEEEEECCEEEecC
Confidence 466789999999999998754
No 317
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.74 E-value=1.1e-17 Score=153.30 Aligned_cols=137 Identities=17% Similarity=0.233 Sum_probs=108.0
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
|||||++ +|..+. .+|+|+++|.+. ++.+.+.+++.+||+|++.|..... ..+.++..+++.
T Consensus 63 KSTLLkiLaGLl~P-~sGeI~I~G~~~-------------~i~~~~~l~~~lTV~EnL~l~~~~~---~~~~~e~~e~i~ 125 (549)
T PRK13545 63 KSTLSNLIAGVTMP-NKGTVDIKGSAA-------------LIAISSGLNGQLTGIENIELKGLMM---GLTKEKIKEIIP 125 (549)
T ss_pred HHHHHHHHhCCCCC-CceEEEECCEee-------------eEEeccccCCCCcHHHHHHhhhhhc---CCCHHHHHHHHH
Confidence 7999999 997544 689999999752 1223445667799999999876531 223444433332
Q ss_pred -------hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcCCCH
Q psy8953 80 -------LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVATIHTPSA 128 (286)
Q Consensus 80 -------l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~~~~ 128 (286)
+. ....+|||||| ||++||+.++..+++.|++++++|.|||+++|+++
T Consensus 126 elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~- 204 (549)
T PRK13545 126 EIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLS- 204 (549)
T ss_pred HHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH-
Confidence 22 34568999999 99999999999999999999878999999999986
Q ss_pred HHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 129 LLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 129 ~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
.+..+||++++|++|++++.|+++++.
T Consensus 205 ~i~~l~DrIivL~~GkIv~~G~~~el~ 231 (549)
T PRK13545 205 QVKSFCTKALWLHYGQVKEYGDIKEVV 231 (549)
T ss_pred HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 466889999999999999999988765
No 318
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.74 E-value=8.2e-18 Score=143.04 Aligned_cols=150 Identities=12% Similarity=0.059 Sum_probs=110.5
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
||||+++ +|..+. .+|+|.++|. .++|++|++..++..||+|.+.+............++..+.+.
T Consensus 38 KSTLlk~L~G~~~p-~~G~i~~~g~------------~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l~ 104 (246)
T cd03237 38 KTTFIKMLAGVLKP-DEGDIEIELD------------TVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQ 104 (246)
T ss_pred HHHHHHHHhCCCcC-CCCeEEECCc------------eEEEecccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHHcC
Confidence 8999999 997543 6899999984 4899999998888899999998765421110000122233333
Q ss_pred hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC-CCEEEEEEcCCCHHHHHHh
Q psy8953 80 LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ-GRTVVATIHTPSALLFEKF 134 (286)
Q Consensus 80 l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~-g~tii~~~h~~~~~~~~~~ 134 (286)
+. ....+||||+| ||++||+.++..+.++|++++++ |.|||+++|+++ .+..++
T Consensus 105 l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~-~~~~~~ 183 (246)
T cd03237 105 IEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDII-MIDYLA 183 (246)
T ss_pred CHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhC
Confidence 22 44679999999 99999999999999999999875 899999999986 466789
Q ss_pred hhHhhhcCCeee--cccChhcHH----HHHHhCCCC
Q psy8953 135 DSLYALAKGHCI--YRGSISRLV----PHLASLGLP 164 (286)
Q Consensus 135 d~v~~l~~G~i~--~~g~~~~~~----~~~~~~g~~ 164 (286)
|++++|+++..+ ..+++.++. .+++..++.
T Consensus 184 d~i~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 219 (246)
T cd03237 184 DRLIVFEGEPSVNGVANPPQSLRSGMNRFLKNLDIT 219 (246)
T ss_pred CEEEEEcCCCeeEEEeCCchHHHHHHHHHHHHCCCE
Confidence 999999765433 445555432 456666553
No 319
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.73 E-value=6.7e-18 Score=144.12 Aligned_cols=135 Identities=18% Similarity=0.222 Sum_probs=105.1
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCC--CCHHHHHHHHHhcCCCCCCCHHHHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPK--LTVTEAMMIASHLKLGFKVSTQEKKDQ 77 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~--~tV~e~l~f~~~~~~~~~~~~~~~~~~ 77 (286)
|||||++ +|..+. .+|+|.++|. ..++||+|++.+++. .|+.+.+.+... ...+++.+.
T Consensus 43 KSTLl~~i~Gl~~p-~~G~i~~~~~-----------~~i~~v~q~~~~~~~l~~~~~~~~~~~~~------~~~~~~~~~ 104 (251)
T PRK09544 43 KSTLVRVVLGLVAP-DEGVIKRNGK-----------LRIGYVPQKLYLDTTLPLTVNRFLRLRPG------TKKEDILPA 104 (251)
T ss_pred HHHHHHHHhCCCCC-CceEEEECCc-----------cCEEEeccccccccccChhHHHHHhcccc------ccHHHHHHH
Confidence 8999999 997543 6899999872 359999999877665 478887654321 123333333
Q ss_pred Hh---hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC-CCEEEEEEcCCCHH
Q psy8953 78 VS---LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ-GRTVVATIHTPSAL 129 (286)
Q Consensus 78 v~---l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~-g~tii~~~h~~~~~ 129 (286)
++ +. ....+||||+| ||++||+.++..++++|++++++ |.|||+++|+++ .
T Consensus 105 l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~-~ 183 (251)
T PRK09544 105 LKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLH-L 183 (251)
T ss_pred HHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-H
Confidence 32 22 45668999999 99999999999999999999876 999999999986 4
Q ss_pred HHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 130 LFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 130 ~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
+..++|++++|++ +++..|+++++.
T Consensus 184 i~~~~d~i~~l~~-~i~~~g~~~~~~ 208 (251)
T PRK09544 184 VMAKTDEVLCLNH-HICCSGTPEVVS 208 (251)
T ss_pred HHHhCCEEEEECC-ceEeeCCHHHHh
Confidence 6688999999965 799999887654
No 320
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.73 E-value=2.5e-18 Score=138.49 Aligned_cols=120 Identities=26% Similarity=0.393 Sum_probs=92.2
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
||||+++ +|..+. .+|+|.++|+++...+...+++.++|++|++.+++ .||.|++ + |.-++ +|+.
T Consensus 41 KstLl~~i~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~-~t~~e~l-------L----S~G~~-~rl~ 106 (171)
T cd03228 41 KSTLLKLLLRLYDP-TSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFS-GTIRENI-------L----SGGQR-QRIA 106 (171)
T ss_pred HHHHHHHHHcCCCC-CCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhcc-chHHHHh-------h----CHHHH-HHHH
Confidence 8999999 997554 68999999998754333455678999999997665 6999998 1 22222 2222
Q ss_pred hh----------hhhcccCCccccCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHhhhHhhhcCCe
Q psy8953 80 LE----------LWNNFCKKKKKKKRGLDSSSCSQCVSLLANLAKQGRTVVATIHTPSALLFEKFDSLYALAKGH 144 (286)
Q Consensus 80 l~----------~~~~~~gG~kqptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~~~~~~~~~~d~v~~l~~G~ 144 (286)
+. ..|. ||++||+.++.++.++|+++.+ ++|||+++|+++. +.. +|++++|++|+
T Consensus 107 la~al~~~p~llllDE-------P~~gLD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~-~~~-~d~~~~l~~g~ 171 (171)
T cd03228 107 IARALLRDPPILILDE-------ATSALDPETEALILEALRALAK-GKTVIVIAHRLST-IRD-ADRIIVLDDGR 171 (171)
T ss_pred HHHHHhcCCCEEEEEC-------CCcCCCHHHHHHHHHHHHHhcC-CCEEEEEecCHHH-HHh-CCEEEEEcCCC
Confidence 10 2233 9999999999999999999965 7999999999975 445 99999999884
No 321
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.73 E-value=1.4e-17 Score=138.21 Aligned_cols=130 Identities=18% Similarity=0.275 Sum_probs=101.3
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
||||+++ +|..+. .+|+|+++|+++.. ..+++.++||+|++.+++.+||.|++.|..+..- ...+++.+.++
T Consensus 41 KSTLl~~l~G~~~~-~~G~i~~~g~~~~~---~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~l~ 113 (207)
T PRK13539 41 KTTLLRLIAGLLPP-AAGTIKLDGGDIDD---PDVAEACHYLGHRNAMKPALTVAENLEFWAAFLG---GEELDIAAALE 113 (207)
T ss_pred HHHHHHHHhCCCCC-CCceEEECCEeCcc---hhhHhhcEEecCCCcCCCCCcHHHHHHHHHHhcC---CcHHHHHHHHH
Confidence 8999999 997553 68999999998643 2256789999999988899999999998775421 12333333333
Q ss_pred ---hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHH
Q psy8953 80 ---LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVATIHTPSALLFE 132 (286)
Q Consensus 80 ---l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~~~~~~~~ 132 (286)
+. ....+||||+| ||++||+.++.++++.|++++++|.|||+++|+++. +..
T Consensus 114 ~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~-~~~ 192 (207)
T PRK13539 114 AVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLG-LPG 192 (207)
T ss_pred HcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchh-hcc
Confidence 22 34568999999 999999999999999999998789999999999865 323
Q ss_pred HhhhHhhh
Q psy8953 133 KFDSLYAL 140 (286)
Q Consensus 133 ~~d~v~~l 140 (286)
|+++.+
T Consensus 193 --~~~~~~ 198 (207)
T PRK13539 193 --ARELDL 198 (207)
T ss_pred --CcEEee
Confidence 776555
No 322
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.72 E-value=5.2e-18 Score=159.96 Aligned_cols=130 Identities=24% Similarity=0.257 Sum_probs=105.5
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
||||+++ +|+.+. .+|+|++||+++.+.+...+++.+|||+|++.+|. .|++|+|.++.. ..+++++.+.++
T Consensus 361 KSTL~~ll~g~~~~-~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~-~ti~~Ni~~~~~-----~~~~~~i~~a~~ 433 (529)
T TIGR02857 361 KSTLLNLLLGFVDP-TEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFA-GTIAENIRLARP-----DASDAEIRRALE 433 (529)
T ss_pred HHHHHHHHhcCCCC-CCcEEEECCEehhhCCHHHHHhheEEEcCCCcccC-cCHHHHHhccCC-----CCCHHHHHHHHH
Confidence 8999999 996554 68999999999987666788899999999998885 599999998742 134566655433
Q ss_pred --------------hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEE
Q psy8953 80 --------------LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVA 121 (286)
Q Consensus 80 --------------l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~ 121 (286)
++ ....+|||||| ||++||+.+...+++.|+++. .++|+|+
T Consensus 434 ~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~ 512 (529)
T TIGR02857 434 RAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALA-QGRTVLL 512 (529)
T ss_pred HcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhc-CCCEEEE
Confidence 11 12458899999 999999999999999999986 4899999
Q ss_pred EEcCCCHHHHHHhhhHhhh
Q psy8953 122 TIHTPSALLFEKFDSLYAL 140 (286)
Q Consensus 122 ~~h~~~~~~~~~~d~v~~l 140 (286)
++|+++. + ..+|++++|
T Consensus 513 itH~~~~-~-~~~d~i~~l 529 (529)
T TIGR02857 513 VTHRLAL-A-ERADRIVVL 529 (529)
T ss_pred EecCHHH-H-HhCCEEEeC
Confidence 9999853 4 679998765
No 323
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.72 E-value=1.1e-17 Score=156.36 Aligned_cols=147 Identities=14% Similarity=0.174 Sum_probs=109.7
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhh-hcccceeeEEecCcc---cCCCCCHHHH-----HHHHHhc-CCCCCC
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACI-EQFLKLSCYIQQDDA---LRPKLTVTEA-----MMIASHL-KLGFKV 69 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~-~~~~~~~g~v~Q~~~---~~~~~tV~e~-----l~f~~~~-~~~~~~ 69 (286)
||||+++ +|..+. .+|+|.++|+++...+. ..+++.+|||+|++. +++.+|+.++ +.+.+.. +. .
T Consensus 287 KSTLl~~l~Gl~~p-~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 362 (491)
T PRK10982 287 RTDIVETLFGIREK-SAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGL---L 362 (491)
T ss_pred HHHHHHHHcCCCcC-CccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccc---c
Confidence 8999999 997654 68999999998754222 223567999999963 6788887766 4332221 11 1
Q ss_pred CHHHHHHHHh-------h-----h-hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCC
Q psy8953 70 STQEKKDQVS-------L-----E-LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGR 117 (286)
Q Consensus 70 ~~~~~~~~v~-------l-----~-~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~ 117 (286)
+..+.++++. + . ...++|||||| ||+|||+.++.+++++|+.+.++|.
T Consensus 363 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~ 442 (491)
T PRK10982 363 DNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDK 442 (491)
T ss_pred CcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCC
Confidence 1222222221 2 1 34578999999 9999999999999999999988899
Q ss_pred EEEEEEcCCCHHHHHHhhhHhhhcCCeeecccChh
Q psy8953 118 TVVATIHTPSALLFEKFDSLYALAKGHCIYRGSIS 152 (286)
Q Consensus 118 tii~~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~ 152 (286)
|||+++|+++. +..++|++++|++|+++..++.+
T Consensus 443 tvi~vsHd~~~-~~~~~d~v~~l~~g~i~~~~~~~ 476 (491)
T PRK10982 443 GIIIISSEMPE-LLGITDRILVMSNGLVAGIVDTK 476 (491)
T ss_pred EEEEECCChHH-HHhhCCEEEEEECCEEEEEEccc
Confidence 99999999864 66889999999999999766553
No 324
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.72 E-value=3.5e-18 Score=132.15 Aligned_cols=141 Identities=18% Similarity=0.256 Sum_probs=117.5
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHH---H
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKK---D 76 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~---~ 76 (286)
||||+.+ |-+.+. .+|+++.-|++++...+..++..|+||.|.|.+|+. ||++++-|.-++|-. ...++.-. +
T Consensus 42 KStllk~va~Lisp-~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~-tVeDNlifP~~~r~r-r~dr~aa~~lla 118 (223)
T COG4619 42 KSTLLKIVASLISP-TSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGD-TVEDNLIFPWQIRNR-RPDRAAALDLLA 118 (223)
T ss_pred HHHHHHHHHhccCC-CCceEEEcCccccccChHHHHHHHHHHHcCcccccc-chhhccccchHHhcc-CCChHHHHHHHH
Confidence 8999999 988766 799999999999998889999999999999999875 899999998876553 22333322 3
Q ss_pred HHh-----hh-hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHh-CCCEEEEEEcCCCHHH
Q psy8953 77 QVS-----LE-LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAK-QGRTVVATIHTPSALL 130 (286)
Q Consensus 77 ~v~-----l~-~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~-~g~tii~~~h~~~~~~ 130 (286)
|++ |. ....+|||||| |||.||+.+.+.+-.+|.++.+ +.+.++.++|+++. .
T Consensus 119 r~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dq-a 197 (223)
T COG4619 119 RFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQ-A 197 (223)
T ss_pred HcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHH-H
Confidence 444 33 45668999999 9999999999999999999975 68999999999865 4
Q ss_pred HHHhhhHhhhcCCee
Q psy8953 131 FEKFDSLYALAKGHC 145 (286)
Q Consensus 131 ~~~~d~v~~l~~G~i 145 (286)
...+|+++-+..|++
T Consensus 198 ~rha~k~itl~~G~~ 212 (223)
T COG4619 198 IRHADKVITLQPGHA 212 (223)
T ss_pred hhhhheEEEeccCcc
Confidence 477999998888765
No 325
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.70 E-value=8.6e-18 Score=136.48 Aligned_cols=121 Identities=24% Similarity=0.347 Sum_probs=95.3
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
||||+++ +|..+. .+|+|.+||+++...+...+++.++||+| ....+++. +.
T Consensus 38 KStLl~~i~G~~~~-~~G~v~~~g~~~~~~~~~~~~~~i~~~~q---------------~l~~~gl~-----~~------ 90 (180)
T cd03214 38 KSTLLKTLAGLLKP-SSGEILLDGKDLASLSPKELARKIAYVPQ---------------ALELLGLA-----HL------ 90 (180)
T ss_pred HHHHHHHHhCCCCC-CCcEEEECCEECCcCCHHHHHHHHhHHHH---------------HHHHcCCH-----hH------
Confidence 8999999 997543 78999999998865333455678999999 11123221 00
Q ss_pred hh-hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC-CCEEEEEEcCCCHHHHHHhhhHh
Q psy8953 80 LE-LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ-GRTVVATIHTPSALLFEKFDSLY 138 (286)
Q Consensus 80 l~-~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~-g~tii~~~h~~~~~~~~~~d~v~ 138 (286)
+. ....+||||+| ||++||+.++..++++|++++++ |.|+|+++|+++. +.+++|+++
T Consensus 91 ~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~-~~~~~d~~~ 169 (180)
T cd03214 91 ADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNL-AARYADRVI 169 (180)
T ss_pred hcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEE
Confidence 11 34568899988 99999999999999999999876 8999999999874 558899999
Q ss_pred hhcCCeeeccc
Q psy8953 139 ALAKGHCIYRG 149 (286)
Q Consensus 139 ~l~~G~i~~~g 149 (286)
+|++|++++.|
T Consensus 170 ~l~~g~i~~~~ 180 (180)
T cd03214 170 LLKDGRIVAQG 180 (180)
T ss_pred EEECCEEEecC
Confidence 99999998653
No 326
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.70 E-value=4.8e-17 Score=128.84 Aligned_cols=151 Identities=17% Similarity=0.229 Sum_probs=120.4
Q ss_pred Cchhhhh-cCCCCCCceeEEEECC-eecCchhhhcc-cceeeEEecCcccCCCCCHHHHHHHHHhcCCC------CCCCH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNG-QERKSACIEQF-LKLSCYIQQDDALRPKLTVTEAMMIASHLKLG------FKVST 71 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g-~~~~~~~~~~~-~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~------~~~~~ 71 (286)
|||+|++ +|.... .+|++++.| .++..++-..+ +.-+|-=||-|..|..+||+|+|..+....-+ .+..
T Consensus 44 KTT~mD~ItGKtrp-~~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~- 121 (249)
T COG4674 44 KTTLMDVITGKTRP-QEGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLR- 121 (249)
T ss_pred ceeeeeeecccCCC-CcceEEEcCchhhccCCHHHHHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcC-
Confidence 8999999 996544 699999999 77766433333 57899999999999999999999988753221 1111
Q ss_pred HHHHHHHh-------hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEE
Q psy8953 72 QEKKDQVS-------LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVV 120 (286)
Q Consensus 72 ~~~~~~v~-------l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii 120 (286)
.+-++||+ |. ....+|.|||| |++|+--+-+.+...+|+.|+. ..+|+
T Consensus 122 ~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~-~hsil 200 (249)
T COG4674 122 AEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG-KHSIL 200 (249)
T ss_pred hhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhc-CceEE
Confidence 22223444 22 44568999999 9999999999999999999988 56999
Q ss_pred EEEcCCCHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 121 ATIHTPSALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 121 ~~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
++||+.. .+..++++|-||++|.+++.|+.+++.
T Consensus 201 VVEHDM~-Fvr~~A~~VTVlh~G~VL~EGsld~v~ 234 (249)
T COG4674 201 VVEHDMG-FVREIADKVTVLHEGSVLAEGSLDEVQ 234 (249)
T ss_pred EEeccHH-HHHHhhheeEEEeccceeecccHHHhh
Confidence 9999996 477999999999999999999987764
No 327
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.70 E-value=1.5e-17 Score=171.12 Aligned_cols=139 Identities=15% Similarity=0.173 Sum_probs=107.0
Q ss_pred Cchhhhh-cCCCCCCceeEEEE-CCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhc-CC------------
Q psy8953 1 MSIELNV-QSIRLTGSSGKILV-NGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHL-KL------------ 65 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~-~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~-~~------------ 65 (286)
||||+++ +|+... .+|+|++ +|+++...+...+++.+|||+|++.+|. .||+|+|.|+... +.
T Consensus 424 KSTLl~lL~gl~~p-~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~-~TI~eNI~~g~~~~~~~~~~~~~~~~~~ 501 (1466)
T PTZ00265 424 KSTILKLIERLYDP-TEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFS-NSIKNNIKYSLYSLKDLEALSNYYNEDG 501 (1466)
T ss_pred HHHHHHHHHHhccC-CCCeEEEeCCcchhhCCHHHHHHhccEecccccchh-ccHHHHHHhcCCCccccchhcccccccc
Confidence 8999999 996543 7899999 4688765555667889999999998887 4999999997420 00
Q ss_pred ---------------------------------------CCCCCHHHHHHHHh---hh----------------hhhccc
Q psy8953 66 ---------------------------------------GFKVSTQEKKDQVS---LE----------------LWNNFC 87 (286)
Q Consensus 66 ---------------------------------------~~~~~~~~~~~~v~---l~----------------~~~~~~ 87 (286)
+...+.+++.+-.+ +. ....+|
T Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LS 581 (1466)
T PTZ00265 502 NDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLS 581 (1466)
T ss_pred ccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCC
Confidence 00123344433222 11 124588
Q ss_pred CCccc-------------------cCCCcchHHHHHHHHHHHHHHh-CCCEEEEEEcCCCHHHHHHhhhHhhhcCC
Q psy8953 88 KKKKK-------------------KKRGLDSSSCSQCVSLLANLAK-QGRTVVATIHTPSALLFEKFDSLYALAKG 143 (286)
Q Consensus 88 gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~-~g~tii~~~h~~~~~~~~~~d~v~~l~~G 143 (286)
||||| ||++||+.+...+.+.|+++.+ .|+|+|++.|+++. + ..+|++++|++|
T Consensus 582 GGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~-i-~~aD~Iivl~~g 655 (1466)
T PTZ00265 582 GGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLST-I-RYANTIFVLSNR 655 (1466)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHH-H-HhCCEEEEEeCC
Confidence 99999 9999999999999999999986 59999999999964 4 689999999886
No 328
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.70 E-value=1.9e-17 Score=138.64 Aligned_cols=134 Identities=22% Similarity=0.194 Sum_probs=100.8
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhh----hcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACI----EQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKK 75 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~----~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~ 75 (286)
|||||++ +|..+. .+|+|.++|+++...+. ...++.++||+|++.++ ..||+|++.+.... ..++..
T Consensus 40 KSTLl~~i~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~t~~~nl~~~~~~------~~~~~~ 111 (218)
T cd03290 40 KSSLLLAILGEMQT-LEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLL-NATVEENITFGSPF------NKQRYK 111 (218)
T ss_pred HHHHHHHHhccCCC-CCCeEEECCcccccccccccchhhcceEEEEcCCCccc-cccHHHHHhhcCcC------CHHHHH
Confidence 8999999 997543 58999999998753211 12346799999999876 67999999886431 122222
Q ss_pred ---HHHhhh----------------hhhcccCCccc-------------------cCCCcchHHHHHHHH--HHHHHHhC
Q psy8953 76 ---DQVSLE----------------LWNNFCKKKKK-------------------KKRGLDSSSCSQCVS--LLANLAKQ 115 (286)
Q Consensus 76 ---~~v~l~----------------~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~--~l~~l~~~ 115 (286)
+.+.+. ....+||||+| ||++||+.++.++++ +++.+.+.
T Consensus 112 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~ 191 (218)
T cd03290 112 AVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDD 191 (218)
T ss_pred HHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcC
Confidence 222111 23468899999 999999999999998 77777667
Q ss_pred CCEEEEEEcCCCHHHHHHhhhHhhhcCCe
Q psy8953 116 GRTVVATIHTPSALLFEKFDSLYALAKGH 144 (286)
Q Consensus 116 g~tii~~~h~~~~~~~~~~d~v~~l~~G~ 144 (286)
|.|||+++|+++. + ..+|++++|++|.
T Consensus 192 ~~tii~~sH~~~~-~-~~~d~i~~l~~G~ 218 (218)
T cd03290 192 KRTLVLVTHKLQY-L-PHADWIIAMKDGS 218 (218)
T ss_pred CCEEEEEeCChHH-H-hhCCEEEEecCCC
Confidence 8999999999975 4 4699999998874
No 329
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.69 E-value=2.6e-17 Score=131.44 Aligned_cols=112 Identities=22% Similarity=0.296 Sum_probs=86.4
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhh-hcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACI-EQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQV 78 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~-~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v 78 (286)
|||||++ +|..+. .+|+|+++|+++...+. ...++.++||+| + |.-++ +|+
T Consensus 39 KSTLl~~i~G~~~~-~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q---------------------L----S~G~~-qrl 91 (163)
T cd03216 39 KSTLMKILSGLYKP-DSGEILVDGKEVSFASPRDARRAGIAMVYQ---------------------L----SVGER-QMV 91 (163)
T ss_pred HHHHHHHHhCCCCC-CCeEEEECCEECCcCCHHHHHhcCeEEEEe---------------------c----CHHHH-HHH
Confidence 8999999 997654 78999999998865322 234568999999 1 22222 222
Q ss_pred hhh----------hhhcccCCccccCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHhhhHhhhcCCeeec
Q psy8953 79 SLE----------LWNNFCKKKKKKKRGLDSSSCSQCVSLLANLAKQGRTVVATIHTPSALLFEKFDSLYALAKGHCIY 147 (286)
Q Consensus 79 ~l~----------~~~~~~gG~kqptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~~~~~~~~~~d~v~~l~~G~i~~ 147 (286)
.+. ..|. ||++||+.++..+.+.|++++++|.|||+++|+++ .+.+++|++++|++|++++
T Consensus 92 ~laral~~~p~illlDE-------P~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 92 EIARALARNARLLILDE-------PTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLD-EVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred HHHHHHhcCCCEEEEEC-------CCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEe
Confidence 200 2233 99999999999999999999877999999999986 4668899999999999875
No 330
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.69 E-value=3e-17 Score=136.02 Aligned_cols=121 Identities=18% Similarity=0.209 Sum_probs=94.0
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHH---H
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKK---D 76 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~---~ 76 (286)
|||||++ +|..+. .+|+|+++| .+|||+|++.++ ..||+|++.|..+. ..++.. +
T Consensus 44 KSTLl~~i~G~~~~-~~G~i~~~g-------------~i~~~~q~~~l~-~~t~~enl~~~~~~------~~~~~~~~~~ 102 (204)
T cd03250 44 KSSLLSALLGELEK-LSGSVSVPG-------------SIAYVSQEPWIQ-NGTIRENILFGKPF------DEERYEKVIK 102 (204)
T ss_pred HHHHHHHHhCcCCC-CCCeEEEcC-------------EEEEEecCchhc-cCcHHHHhccCCCc------CHHHHHHHHH
Confidence 8999999 997543 789999999 499999999877 56999999996542 122221 1
Q ss_pred HHh----hh------------hhhcccCCccc-------------------cCCCcchHHHHHHHH-HHHHHHhCCCEEE
Q psy8953 77 QVS----LE------------LWNNFCKKKKK-------------------KKRGLDSSSCSQCVS-LLANLAKQGRTVV 120 (286)
Q Consensus 77 ~v~----l~------------~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~-~l~~l~~~g~tii 120 (286)
.+. +. ....+||||+| ||++||+.++..+++ +++.+.++|.|||
T Consensus 103 ~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi 182 (204)
T cd03250 103 ACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRI 182 (204)
T ss_pred HcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEE
Confidence 211 11 12568899999 999999999999998 5677766689999
Q ss_pred EEEcCCCHHHHHHhhhHhhhcCCe
Q psy8953 121 ATIHTPSALLFEKFDSLYALAKGH 144 (286)
Q Consensus 121 ~~~h~~~~~~~~~~d~v~~l~~G~ 144 (286)
+++|+++. +.. +|++++|++|+
T Consensus 183 ~~sh~~~~-~~~-~d~i~~l~~G~ 204 (204)
T cd03250 183 LVTHQLQL-LPH-ADQIVVLDNGR 204 (204)
T ss_pred EEeCCHHH-Hhh-CCEEEEEeCCC
Confidence 99999864 444 99999999885
No 331
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.69 E-value=2.8e-17 Score=155.49 Aligned_cols=135 Identities=20% Similarity=0.193 Sum_probs=105.3
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
||||+++ +|..+. .+|+|++||+++...+...+++.++||+||+.+|.. |++|+ +...+.+++.+.++
T Consensus 362 KSTL~~ll~g~~~~-~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~-ti~~n---------~~~~~~~~~~~~~~ 430 (547)
T PRK10522 362 KSTLAMLLTGLYQP-QSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQ-LLGPE---------GKPANPALVEKWLE 430 (547)
T ss_pred HHHHHHHHhCCCCC-CCeEEEECCEECCCCCHHHHhhheEEEecChhHHHH-hhccc---------cCchHHHHHHHHHH
Confidence 8999999 996544 789999999999876667788999999999976654 45554 01123444444443
Q ss_pred ---hh----h------hhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHh-CCCEEEEEEcCC
Q psy8953 80 ---LE----L------WNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAK-QGRTVVATIHTP 126 (286)
Q Consensus 80 ---l~----~------~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~-~g~tii~~~h~~ 126 (286)
+. . ...+|||||| ||++||+.+...+++.|.++.. .++|+|+++|++
T Consensus 431 ~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~ 510 (547)
T PRK10522 431 RLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDD 510 (547)
T ss_pred HcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEech
Confidence 11 1 2468999999 9999999999999999987654 589999999998
Q ss_pred CHHHHHHhhhHhhhcCCeeecc
Q psy8953 127 SALLFEKFDSLYALAKGHCIYR 148 (286)
Q Consensus 127 ~~~~~~~~d~v~~l~~G~i~~~ 148 (286)
+ ....+|++++|++|+++..
T Consensus 511 ~--~~~~~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 511 H--YFIHADRLLEMRNGQLSEL 530 (547)
T ss_pred H--HHHhCCEEEEEECCEEEEe
Confidence 5 3477999999999999865
No 332
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=2.3e-16 Score=128.17 Aligned_cols=162 Identities=20% Similarity=0.215 Sum_probs=128.1
Q ss_pred Cchhhhh-cCCCCC-CceeEEEECCeecCchhhhcc-cceeeEEecCcccCCCCCHHHHHHHHHhcCCCC-CC---CHHH
Q psy8953 1 MSIELNV-QSIRLT-GSSGKILVNGQERKSACIEQF-LKLSCYIQQDDALRPKLTVTEAMMIASHLKLGF-KV---STQE 73 (286)
Q Consensus 1 ~stll~~-~g~~~~-~~~G~i~~~g~~~~~~~~~~~-~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~-~~---~~~~ 73 (286)
||||.++ +|.-.. ..+|+|+++|+++...++.+. +.-+...||.|.-++..++.+-|.-+...+... .. -.++
T Consensus 43 KSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~ 122 (251)
T COG0396 43 KSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKE 122 (251)
T ss_pred HHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHH
Confidence 8999999 996544 499999999999987555444 578899999999999999999999888642221 11 0122
Q ss_pred HHHHHh--------hh-hh-hcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEEEc
Q psy8953 74 KKDQVS--------LE-LW-NNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVATIH 124 (286)
Q Consensus 74 ~~~~v~--------l~-~~-~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h 124 (286)
+++..+ +. .. .-+|||||| |-||||..+-..+.+.+..++..|.++++++|
T Consensus 123 ~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITH 202 (251)
T COG0396 123 LKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITH 202 (251)
T ss_pred HHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEec
Confidence 222222 22 22 237899999 88999999999999999999999999999999
Q ss_pred CCCHHHHHHh--hhHhhhcCCeeecccChhcHHHHHHhCCCCC
Q psy8953 125 TPSALLFEKF--DSLYALAKGHCIYRGSISRLVPHLASLGLPC 165 (286)
Q Consensus 125 ~~~~~~~~~~--d~v~~l~~G~i~~~g~~~~~~~~~~~~g~~~ 165 (286)
..+ +.++. |+|-+|.+|+|+..|.+ ++...++.-|+.+
T Consensus 203 y~r--ll~~i~pD~vhvl~~GrIv~sG~~-el~~~le~~gy~~ 242 (251)
T COG0396 203 YQR--LLDYIKPDKVHVLYDGRIVKSGDP-ELAEELEEKGYDW 242 (251)
T ss_pred HHH--HHhhcCCCEEEEEECCEEEecCCH-HHHHHHHHhchHH
Confidence 964 55666 99999999999999999 8888888777743
No 333
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.69 E-value=4.4e-17 Score=141.02 Aligned_cols=134 Identities=17% Similarity=0.149 Sum_probs=101.7
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
|||||++ +|+.+. .+|+|.++| .++||+|++.+++. ||+|++.|+... . .....+..+.+.
T Consensus 76 KSTLl~~I~Gl~~p-~~G~I~i~g-------------~i~yv~q~~~l~~~-tv~enl~~~~~~--~-~~~~~~~l~~~~ 137 (282)
T cd03291 76 KTSLLMLILGELEP-SEGKIKHSG-------------RISFSSQFSWIMPG-TIKENIIFGVSY--D-EYRYKSVVKACQ 137 (282)
T ss_pred HHHHHHHHhCCCCC-CCcEEEECC-------------EEEEEeCccccccc-CHHHHhhccccc--C-HHHHHHHHHHhC
Confidence 8999999 997544 689999998 28999999987775 999999986431 0 000111112111
Q ss_pred h----h------------hhhcccCCccc-------------------cCCCcchHHHHHHHHHH-HHHHhCCCEEEEEE
Q psy8953 80 L----E------------LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLL-ANLAKQGRTVVATI 123 (286)
Q Consensus 80 l----~------------~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l-~~l~~~g~tii~~~ 123 (286)
+ . ....+||||+| ||++||+.++..+++.+ +.+. ++.|||+++
T Consensus 138 l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~-~~~tIiiis 216 (282)
T cd03291 138 LEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM-ANKTRILVT 216 (282)
T ss_pred CHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhh-CCCEEEEEe
Confidence 1 1 12468999999 99999999999999754 5665 478999999
Q ss_pred cCCCHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 124 HTPSALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 124 h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
|+++. + ..+|++++|++|++++.|+++++.
T Consensus 217 H~~~~-~-~~~d~i~~l~~G~i~~~g~~~~~~ 246 (282)
T cd03291 217 SKMEH-L-KKADKILILHEGSSYFYGTFSELQ 246 (282)
T ss_pred CChHH-H-HhCCEEEEEECCEEEEECCHHHHH
Confidence 99875 4 579999999999999999987764
No 334
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.69 E-value=4.5e-17 Score=153.62 Aligned_cols=117 Identities=18% Similarity=0.197 Sum_probs=96.0
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
||||+++ +|+.+. .+|+|++||+++.+. ...+++.+|||+|||.+|.. |++|+|.++-+ ..+.+++.+-++
T Consensus 374 KSTLl~lL~g~~~p-~~G~I~i~g~~i~~~-~~~lr~~i~~V~Q~~~lF~~-TI~eNI~~g~~-----~~~~e~i~~al~ 445 (529)
T TIGR02868 374 KSTLLMLLTGLLDP-LQGEVTLDGVSVSSL-QDELRRRISVFAQDAHLFDT-TVRDNLRLGRP-----DATDEELWAALE 445 (529)
T ss_pred HHHHHHHHhcCCCC-CCcEEEECCEEhhhH-HHHHHhheEEEccCcccccc-cHHHHHhccCC-----CCCHHHHHHHHH
Confidence 8999999 996554 789999999999887 78889999999999988755 99999999742 235666655444
Q ss_pred ---h-----------h-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEE
Q psy8953 80 ---L-----------E-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVA 121 (286)
Q Consensus 80 ---l-----------~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~ 121 (286)
+ + ....+|||||| |||+||+.+...+.+.|.++.+ ++|+|+
T Consensus 446 ~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~-~~TvIi 524 (529)
T TIGR02868 446 RVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAALS-GKTVVV 524 (529)
T ss_pred HcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEE
Confidence 1 1 12348899999 9999999999999999998743 789999
Q ss_pred EEcCC
Q psy8953 122 TIHTP 126 (286)
Q Consensus 122 ~~h~~ 126 (286)
+.|++
T Consensus 525 ItHrl 529 (529)
T TIGR02868 525 ITHHL 529 (529)
T ss_pred EecCC
Confidence 99985
No 335
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.68 E-value=2.9e-17 Score=155.51 Aligned_cols=136 Identities=18% Similarity=0.197 Sum_probs=104.5
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
||||+++ +|.... .+|+|++||.++...+...+++.++||+||+.+|.. |+++++. ...+.+++.+-++
T Consensus 381 KSTl~~ll~g~~~p-~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~-ti~~n~~--------~~~~~~~~~~~~~ 450 (555)
T TIGR01194 381 KSTLAKLFCGLYIP-QEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDD-LIGPDEG--------EHASLDNAQQYLQ 450 (555)
T ss_pred HHHHHHHHhCCCCC-CCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhh-hhhcccc--------cchhHHHHHHHHH
Confidence 8999999 996544 789999999999876667788999999999877654 5666631 1123444444333
Q ss_pred ---hh-----------hhhcccCCccc-------------------cCCCcchHHHHHHHHHH-HHHHhCCCEEEEEEcC
Q psy8953 80 ---LE-----------LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLL-ANLAKQGRTVVATIHT 125 (286)
Q Consensus 80 ---l~-----------~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l-~~l~~~g~tii~~~h~ 125 (286)
+. ....+|||||| ||++||+.+..++.+.+ +.+...|+|+|+++|+
T Consensus 451 ~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~ 530 (555)
T TIGR01194 451 RLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHD 530 (555)
T ss_pred HcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecc
Confidence 11 11358999999 99999999999998865 4566678999999999
Q ss_pred CCHHHHHHhhhHhhhcCCeeecc
Q psy8953 126 PSALLFEKFDSLYALAKGHCIYR 148 (286)
Q Consensus 126 ~~~~~~~~~d~v~~l~~G~i~~~ 148 (286)
++ ....+|++++|++|+++..
T Consensus 531 ~~--~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 531 DQ--YFELADQIIKLAAGCIVKD 551 (555)
T ss_pred HH--HHHhCCEEEEEECCEEEEe
Confidence 85 3478999999999999753
No 336
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.67 E-value=7.9e-17 Score=150.53 Aligned_cols=147 Identities=15% Similarity=0.137 Sum_probs=103.8
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCc-hhhhcccceeeEEecCcccCC--CCCHHHHHHHHHhc--CCCCCCCHH--
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKS-ACIEQFLKLSCYIQQDDALRP--KLTVTEAMMIASHL--KLGFKVSTQ-- 72 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~-~~~~~~~~~~g~v~Q~~~~~~--~~tV~e~l~f~~~~--~~~~~~~~~-- 72 (286)
|||||++ +|..+...+|+|.++|+++.. .....+++.+|||+|++.++. ..|+++.+.++... +.......+
T Consensus 299 KSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (490)
T PRK10938 299 KSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQ 378 (490)
T ss_pred HHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHH
Confidence 8999999 997543368999999987532 111234578999999986543 35777766654321 111111121
Q ss_pred -HHHHHHh---hh------hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCC-CEEEEE
Q psy8953 73 -EKKDQVS---LE------LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQG-RTVVAT 122 (286)
Q Consensus 73 -~~~~~v~---l~------~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g-~tii~~ 122 (286)
+..+.++ +. ....+|||||| ||+|||+.++.+++++|++++++| .|||++
T Consensus 379 ~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviiv 458 (490)
T PRK10938 379 KLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFV 458 (490)
T ss_pred HHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 1122222 21 23568999999 999999999999999999998875 579999
Q ss_pred EcCCCHHHHH-HhhhHhhhcCCeeecc
Q psy8953 123 IHTPSALLFE-KFDSLYALAKGHCIYR 148 (286)
Q Consensus 123 ~h~~~~~~~~-~~d~v~~l~~G~i~~~ 148 (286)
+|+++. +.. .+|++++|++|++++.
T Consensus 459 sHd~~~-~~~~~~d~v~~l~~G~i~~~ 484 (490)
T PRK10938 459 SHHAED-APACITHRLEFVPDGDIYRY 484 (490)
T ss_pred ecchhh-hhhhhheeEEEecCCceEEe
Confidence 999875 445 5899999999998864
No 337
>KOG0055|consensus
Probab=99.65 E-value=7.7e-17 Score=157.81 Aligned_cols=147 Identities=20% Similarity=0.246 Sum_probs=121.4
Q ss_pred CchhhhhcCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh-
Q psy8953 1 MSIELNVQSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS- 79 (286)
Q Consensus 1 ~stll~~~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~- 79 (286)
|||....-.|-....+|.|.|||+++.+.+++.+++.+|.|.|+|.+| +.|.+|+|+|+.+ . ++.+|+.+-.+
T Consensus 1029 KSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF-~~TIrENI~YG~~----~-vs~~eIi~Aak~ 1102 (1228)
T KOG0055|consen 1029 KSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLF-NGTIRENIAYGSE----E-VSEEEIIEAAKL 1102 (1228)
T ss_pred HHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhh-cccHHHHHhccCC----C-CCHHHHHHHHHH
Confidence 577666622222338999999999999988899999999999999876 5699999999932 3 78888876655
Q ss_pred -------------hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEE
Q psy8953 80 -------------LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVAT 122 (286)
Q Consensus 80 -------------l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~ 122 (286)
++ ..-.+|||||| .||-||+++-+.+-+.|++... |+|-|++
T Consensus 1103 ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~-gRT~IvI 1181 (1228)
T KOG0055|consen 1103 ANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAME-GRTTIVI 1181 (1228)
T ss_pred hhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhc-CCcEEEE
Confidence 11 12247799999 8999999999999999999866 7999999
Q ss_pred EcCCCHHHHHHhhhHhhhcCCeeecccChhcHHH
Q psy8953 123 IHTPSALLFEKFDSLYALAKGHCIYRGSISRLVP 156 (286)
Q Consensus 123 ~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 156 (286)
.||++. + ..+|.|+|+++|+|+..|+.++++.
T Consensus 1182 AHRLST-I-qnaD~I~Vi~~G~VvE~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1182 AHRLST-I-QNADVIAVLKNGKVVEQGTHDELLA 1213 (1228)
T ss_pred ecchhh-h-hcCCEEEEEECCEEEecccHHHHHh
Confidence 999974 4 7799999999999999999988875
No 338
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.65 E-value=6.4e-16 Score=127.11 Aligned_cols=126 Identities=20% Similarity=0.193 Sum_probs=96.4
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
||||+++ +|..+. .+|+|+++|.++... . .+.++|++|++.+++..||+|+++|.....- ..+++.+.++
T Consensus 39 KSTLl~~l~G~~~~-~~G~i~~~g~~i~~~---~-~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~----~~~~~~~~l~ 109 (195)
T PRK13541 39 KSSLLRMIAGIMQP-SSGNIYYKNCNINNI---A-KPYCTYIGHNLGLKLEMTVFENLKFWSEIYN----SAETLYAAIH 109 (195)
T ss_pred HHHHHHHHhcCCCC-CCcEEEECCcccChh---h-hhhEEeccCCcCCCccCCHHHHHHHHHHhcc----cHHHHHHHHH
Confidence 8999999 997543 689999999987542 1 3568999999988899999999999765311 1223332222
Q ss_pred ---hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHH
Q psy8953 80 ---LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVATIHTPSALLFE 132 (286)
Q Consensus 80 ---l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~~~~~~~~ 132 (286)
+. ....+||||+| ||++||+.++..+.++|+.+.+.|.|+|+++|+++. + .
T Consensus 110 ~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~-i-~ 187 (195)
T PRK13541 110 YFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESS-I-K 187 (195)
T ss_pred HcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccc-c-c
Confidence 22 34568999999 999999999999999998877779999999999874 3 3
Q ss_pred HhhhH
Q psy8953 133 KFDSL 137 (286)
Q Consensus 133 ~~d~v 137 (286)
.+|-+
T Consensus 188 ~~~~~ 192 (195)
T PRK13541 188 SAQIL 192 (195)
T ss_pred hhhee
Confidence 35543
No 339
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.64 E-value=2.6e-16 Score=134.48 Aligned_cols=141 Identities=18% Similarity=0.085 Sum_probs=102.8
Q ss_pred Cchhhhh-cCCCCCCceeEEE-----------ECCeecCchhhhcc--cceeeEEecCcccCCCCCHHHHHHHHHhcCCC
Q psy8953 1 MSIELNV-QSIRLTGSSGKIL-----------VNGQERKSACIEQF--LKLSCYIQQDDALRPKLTVTEAMMIASHLKLG 66 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~-----------~~g~~~~~~~~~~~--~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~ 66 (286)
|||||++ +|..+. .+|+|+ ++|+++........ ...++|++|+..+++. ++.+++.+....
T Consensus 39 KSTLlk~l~Gl~~p-~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~i~~~l~~--- 113 (255)
T cd03236 39 KSTALKILAGKLKP-NLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIVKPQYVDLIPK-AVKGKVGELLKK--- 113 (255)
T ss_pred HHHHHHHHhCCcCC-CCceEeeccccchhhhhccCchhhhhhHHhhhcccceeeecchhccCch-HHHHHHHHHhch---
Confidence 8999999 997544 699996 88988754211111 1247999999888884 888998876421
Q ss_pred CCCCHHHHHHHHh---hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEE
Q psy8953 67 FKVSTQEKKDQVS---LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTV 119 (286)
Q Consensus 67 ~~~~~~~~~~~v~---l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~ti 119 (286)
....++..+.++ +. ....+|||||| ||++||+.++..+..+|++++++|.||
T Consensus 114 -~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tI 192 (255)
T cd03236 114 -KDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYV 192 (255)
T ss_pred -hHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEE
Confidence 101122222222 22 34568899999 999999999999999999998889999
Q ss_pred EEEEcCCCHHHHHHhhhHhhhcCCeeeccc
Q psy8953 120 VATIHTPSALLFEKFDSLYALAKGHCIYRG 149 (286)
Q Consensus 120 i~~~h~~~~~~~~~~d~v~~l~~G~i~~~g 149 (286)
|+++|+++ .+..++|++++|+ |++.++|
T Consensus 193 IiiSHd~~-~~~~~ad~i~~l~-~~~~~~~ 220 (255)
T cd03236 193 LVVEHDLA-VLDYLSDYIHCLY-GEPGAYG 220 (255)
T ss_pred EEEECCHH-HHHHhCCEEEEEC-CCCCcce
Confidence 99999986 4667899999995 5566544
No 340
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.64 E-value=5.5e-16 Score=146.14 Aligned_cols=135 Identities=13% Similarity=0.113 Sum_probs=103.8
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcc--cCCCCCHHHHHHHHHhcCCCCCCCHHHHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDA--LRPKLTVTEAMMIASHLKLGFKVSTQEKKDQ 77 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~--~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~ 77 (286)
|||||++ +|..+. .+|+|.++|. +.+|||+|++. +++.+||.|++.+... .....++..+.
T Consensus 358 KSTLl~~i~G~~~p-~~G~i~~~~~-----------~~i~~~~q~~~~~~~~~~t~~~~~~~~~~----~~~~~~~~~~~ 421 (530)
T PRK15064 358 KTTLLRTLVGELEP-DSGTVKWSEN-----------ANIGYYAQDHAYDFENDLTLFDWMSQWRQ----EGDDEQAVRGT 421 (530)
T ss_pred HHHHHHHHhCCCCC-CCeEEEECCc-----------eEEEEEcccccccCCCCCcHHHHHHHhcc----CCccHHHHHHH
Confidence 8999999 997543 6899999873 45999999974 4567999999875321 11122233332
Q ss_pred Hh---h-----h-hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcCCCHH
Q psy8953 78 VS---L-----E-LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVATIHTPSAL 129 (286)
Q Consensus 78 v~---l-----~-~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~~~~~ 129 (286)
++ + . ...++|||||| ||++||+.++..+.+.|+++ +.|||+++|+++ .
T Consensus 422 l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~-~ 497 (530)
T PRK15064 422 LGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY---EGTLIFVSHDRE-F 497 (530)
T ss_pred HHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC---CCEEEEEeCCHH-H
Confidence 22 2 1 45678999999 99999999999999999887 349999999986 4
Q ss_pred HHHHhhhHhhhcCCeee-cccChhcHH
Q psy8953 130 LFEKFDSLYALAKGHCI-YRGSISRLV 155 (286)
Q Consensus 130 ~~~~~d~v~~l~~G~i~-~~g~~~~~~ 155 (286)
+..++|++++|++|+++ +.|++.++.
T Consensus 498 ~~~~~d~i~~l~~g~i~~~~g~~~~~~ 524 (530)
T PRK15064 498 VSSLATRIIEITPDGVVDFSGTYEEYL 524 (530)
T ss_pred HHHhCCEEEEEECCeEEEcCCCHHHHH
Confidence 66789999999999998 888877654
No 341
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.64 E-value=2.8e-16 Score=125.84 Aligned_cols=104 Identities=22% Similarity=0.234 Sum_probs=85.0
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
||||+++ +|..+. .+|+|.++|. +.++||+|++.++ ..||.|++.|. .+
T Consensus 40 KSTLl~~l~G~~~~-~~G~i~~~~~-----------~~i~~~~q~~~~~-~~tv~~nl~~~----~~------------- 89 (166)
T cd03223 40 KSSLFRALAGLWPW-GSGRIGMPEG-----------EDLLFLPQRPYLP-LGTLREQLIYP----WD------------- 89 (166)
T ss_pred HHHHHHHHhcCCCC-CCceEEECCC-----------ceEEEECCCCccc-cccHHHHhhcc----CC-------------
Confidence 8999999 997543 6899999873 5699999998754 67999999875 11
Q ss_pred hhhhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHhhhHhhh
Q psy8953 80 LELWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVATIHTPSALLFEKFDSLYAL 140 (286)
Q Consensus 80 l~~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~~~~~~~~~~d~v~~l 140 (286)
..+||||+| ||++||+.++..+.++|+++ +.|+|+++|+++ .. ..+|++++|
T Consensus 90 ----~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsh~~~-~~-~~~d~i~~l 160 (166)
T cd03223 90 ----DVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL---GITVISVGHRPS-LW-KFHDRVLDL 160 (166)
T ss_pred ----CCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh---CCEEEEEeCChh-HH-hhCCEEEEE
Confidence 234555555 99999999999999999987 589999999985 33 689999999
Q ss_pred cCC
Q psy8953 141 AKG 143 (286)
Q Consensus 141 ~~G 143 (286)
+++
T Consensus 161 ~~~ 163 (166)
T cd03223 161 DGE 163 (166)
T ss_pred cCC
Confidence 864
No 342
>PRK13409 putative ATPase RIL; Provisional
Probab=99.64 E-value=5e-16 Score=147.15 Aligned_cols=147 Identities=14% Similarity=0.066 Sum_probs=109.0
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
||||+++ +|..+. .+|+|.++ ..+||++|++.+++.+||+|++.+.... ........+..+++.
T Consensus 378 KSTLlk~L~Gl~~p-~~G~I~~~-------------~~i~y~~Q~~~~~~~~tv~e~l~~~~~~-~~~~~~~~~~L~~l~ 442 (590)
T PRK13409 378 KTTFAKLLAGVLKP-DEGEVDPE-------------LKISYKPQYIKPDYDGTVEDLLRSITDD-LGSSYYKSEIIKPLQ 442 (590)
T ss_pred HHHHHHHHhCCCCC-CceEEEEe-------------eeEEEecccccCCCCCcHHHHHHHHhhh-cChHHHHHHHHHHCC
Confidence 8999999 997543 68999886 1389999999888999999999986431 110000112222222
Q ss_pred h----h-hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC-CCEEEEEEcCCCHHHHHHh
Q psy8953 80 L----E-LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ-GRTVVATIHTPSALLFEKF 134 (286)
Q Consensus 80 l----~-~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~-g~tii~~~h~~~~~~~~~~ 134 (286)
+ . ...++||||+| ||++||+.++.+++++|++++++ |.|||+++|+++ .+..++
T Consensus 443 l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~-~~~~~a 521 (590)
T PRK13409 443 LERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIY-MIDYIS 521 (590)
T ss_pred CHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhC
Confidence 2 2 55679999999 99999999999999999999875 999999999986 466789
Q ss_pred hhHhhhcCCeeecccChhcH-------HHHHHhCCCC
Q psy8953 135 DSLYALAKGHCIYRGSISRL-------VPHLASLGLP 164 (286)
Q Consensus 135 d~v~~l~~G~i~~~g~~~~~-------~~~~~~~g~~ 164 (286)
||+++|++ ++...|...+- ..+++.+++.
T Consensus 522 Drvivl~~-~~~~~g~~~~~~~~~~~~~~~l~~~~i~ 557 (590)
T PRK13409 522 DRLMVFEG-EPGKHGHASGPMDMREGMNRFLKELGIT 557 (590)
T ss_pred CEEEEEcC-cceeeeecCCchhHHHHHHHHHHHcCCE
Confidence 99999965 77776664332 1346666653
No 343
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.64 E-value=7.6e-16 Score=128.33 Aligned_cols=140 Identities=15% Similarity=0.175 Sum_probs=106.1
Q ss_pred Cchhhhh-cCCCCCCceeEEE-ECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKIL-VNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQV 78 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~-~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v 78 (286)
||||+++ +|..+. .+|+|. ++|... .+.|++.+++.+||+|++.|.+... ..+.++..+.+
T Consensus 26 KSTLlk~i~Gl~~~-~sG~i~~~~~~~~-------------~~~~~~~l~~~ltv~enl~~~~~~~---~~~~~~~~~~~ 88 (213)
T PRK15177 26 KTTLTRLLCGLDAP-DEGDFIGLRGDAL-------------PLGANSFILPGLTGEENARMMASLY---GLDGDEFSHFC 88 (213)
T ss_pred HHHHHHHHhCCccC-CCCCEEEecCcee-------------ccccccccCCcCcHHHHHHHHHHHc---CCCHHHHHHHH
Confidence 8999999 997543 789997 777532 1335667889999999999987742 12344433332
Q ss_pred h----hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcCCCHHH
Q psy8953 79 S----LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVATIHTPSALL 130 (286)
Q Consensus 79 ~----l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~~~~~~ 130 (286)
. +. ....+|||||| |+++||+.++..+.+.|.+..+ +.|+|+++|+++ .+
T Consensus 89 ~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~-~~~ii~vsH~~~-~~ 166 (213)
T PRK15177 89 YQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQ-QKGLIVLTHNPR-LI 166 (213)
T ss_pred HHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhh-CCcEEEEECCHH-HH
Confidence 1 22 34568899999 9999999999999998865443 357999999996 46
Q ss_pred HHHhhhHhhhcCCeeecccChhcHHHHHH
Q psy8953 131 FEKFDSLYALAKGHCIYRGSISRLVPHLA 159 (286)
Q Consensus 131 ~~~~d~v~~l~~G~i~~~g~~~~~~~~~~ 159 (286)
..++|++++|++|++++.++.+++...+.
T Consensus 167 ~~~~d~i~~l~~G~i~~~~~~~~~~~~~~ 195 (213)
T PRK15177 167 KEHCHAFGVLLHGKITMCEDLAQATALFE 195 (213)
T ss_pred HHhcCeeEEEECCeEEEeCCHHHHHHHHH
Confidence 67899999999999999999888765443
No 344
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.63 E-value=2.9e-16 Score=119.40 Aligned_cols=123 Identities=16% Similarity=0.151 Sum_probs=97.9
Q ss_pred Cchhhhh-cCCCCC--CceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHH-
Q psy8953 1 MSIELNV-QSIRLT--GSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKD- 76 (286)
Q Consensus 1 ~stll~~-~g~~~~--~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~- 76 (286)
||||+-. +|.-.+ .++|++++|++.++.. ..-+|.+|+.|||+.+||.++|.++|.|++-.-+ .-+.+++
T Consensus 41 KSTLls~~~G~La~~F~~~G~~~l~~~~l~~l--Pa~qRq~GiLFQD~lLFphlsVg~Nl~fAlp~~~----KG~aRr~~ 114 (213)
T COG4136 41 KSTLLSWMIGALAGQFSCTGELWLNEQRLDML--PAAQRQIGILFQDALLFPHLSVGQNLLFALPATL----KGNARRNA 114 (213)
T ss_pred HHHHHHHHHhhcccCcceeeEEEECCeecccc--chhhhheeeeecccccccccccccceEEecCccc----ccHHHHhh
Confidence 8999999 886554 5999999999999874 5567999999999999999999999999985322 1222222
Q ss_pred ------HHhhh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHh-CCCEEEEEEcC
Q psy8953 77 ------QVSLE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAK-QGRTVVATIHT 125 (286)
Q Consensus 77 ------~v~l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~-~g~tii~~~h~ 125 (286)
++.|. .++++|||||- |.|.||.+-+.++.+..-.-.+ .|++.|.++|+
T Consensus 115 a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD 194 (213)
T COG4136 115 ANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHD 194 (213)
T ss_pred HHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecc
Confidence 22233 56789999987 9999999999998887665544 59999999999
Q ss_pred CCHH
Q psy8953 126 PSAL 129 (286)
Q Consensus 126 ~~~~ 129 (286)
..+.
T Consensus 195 ~~Dv 198 (213)
T COG4136 195 LQDV 198 (213)
T ss_pred cccC
Confidence 8763
No 345
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.61 E-value=2.1e-15 Score=142.79 Aligned_cols=138 Identities=15% Similarity=0.169 Sum_probs=103.8
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCc-ccCCCCCHHHHHHHHHhcCCCCCCCHHHHH---
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDD-ALRPKLTVTEAMMIASHLKLGFKVSTQEKK--- 75 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~-~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~--- 75 (286)
|||||++ +|..+. .+|+|.+++. ..+|||+|++ .+++.+||.|++.|..+... ......+.+
T Consensus 363 KSTLl~~i~G~~~p-~~G~i~~~~~-----------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~-~~~~~~~~~~~l 429 (556)
T PRK11819 363 KSTLFKMITGQEQP-DSGTIKIGET-----------VKLAYVDQSRDALDPNKTVWEEISGGLDIIK-VGNREIPSRAYV 429 (556)
T ss_pred HHHHHHHHhCCCCC-CCeEEEECCc-----------eEEEEEeCchhhcCCCCCHHHHHHhhccccc-ccccHHHHHHHH
Confidence 8999999 997543 6899999541 1499999997 67899999999999865321 111112222
Q ss_pred HHHhh-----h-hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcCCCHHH
Q psy8953 76 DQVSL-----E-LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVATIHTPSALL 130 (286)
Q Consensus 76 ~~v~l-----~-~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~~~~~~ 130 (286)
+++.+ . ...++|||||| ||++||+.++..+.++|+++. | |||+++|+++ .+
T Consensus 430 ~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-tvi~vtHd~~-~~ 505 (556)
T PRK11819 430 GRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP--G-CAVVISHDRW-FL 505 (556)
T ss_pred HhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC--C-eEEEEECCHH-HH
Confidence 22222 1 34678999999 999999999999999999873 4 8999999986 46
Q ss_pred HHHhhhHhhhcC-Ceee-cccChhcHH
Q psy8953 131 FEKFDSLYALAK-GHCI-YRGSISRLV 155 (286)
Q Consensus 131 ~~~~d~v~~l~~-G~i~-~~g~~~~~~ 155 (286)
..++|++++|++ |++. +.|+..+..
T Consensus 506 ~~~~d~i~~l~~~g~~~~~~g~~~~~~ 532 (556)
T PRK11819 506 DRIATHILAFEGDSQVEWFEGNFQEYE 532 (556)
T ss_pred HHhCCEEEEEECCCeEEEecCCHHHHH
Confidence 688999999985 7776 677766554
No 346
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.60 E-value=1.6e-15 Score=126.12 Aligned_cols=151 Identities=19% Similarity=0.319 Sum_probs=120.2
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcc-cCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDA-LRPKLTVTEAMMIASHLKLGFKVSTQEKKDQV 78 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~-~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v 78 (286)
|||+|.+ +|.... .+|.|.|||+++-. ..+.+-+.++||+-+-. +.-.+-+.|++...-.. -.++.++-++|.
T Consensus 63 KSTtLKmLTGll~p-~~G~v~V~G~~Pf~-~~~~~~~~~~~v~gqk~ql~Wdlp~~ds~~v~~~I---y~Ipd~~F~~r~ 137 (325)
T COG4586 63 KSTTLKMLTGLLLP-TSGKVRVNGKDPFR-RREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLI---YEIPDDEFAERL 137 (325)
T ss_pred chhhHHHHhCcccc-CCCeEEecCcCcch-hHHHHHHHHHHHhhhhheeeeechhhhhHHHHHHH---HhCCHHHHHHHH
Confidence 8999999 996544 89999999998743 12455678888887654 33444477777666553 345677777776
Q ss_pred h-------hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC-CCEEEEEEcCC
Q psy8953 79 S-------LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ-GRTVVATIHTP 126 (286)
Q Consensus 79 ~-------l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~-g~tii~~~h~~ 126 (286)
+ ++ -.+.+|-|||. ||=|||..++..+.+.|++-+++ +.||+.++|..
T Consensus 138 ~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~ 217 (325)
T COG4586 138 DFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIF 217 (325)
T ss_pred HHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHHHHhhCceEEEEecch
Confidence 6 22 34678899987 99999999999999999999885 99999999999
Q ss_pred CHHHHHHhhhHhhhcCCeeecccChhcHHHH
Q psy8953 127 SALLFEKFDSLYALAKGHCIYRGSISRLVPH 157 (286)
Q Consensus 127 ~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 157 (286)
++ +..+||||++++.|+++|+|+.+++...
T Consensus 218 ~d-i~~lc~rv~~I~~Gqlv~dg~l~~l~~~ 247 (325)
T COG4586 218 DD-IATLCDRVLLIDQGQLVFDGTLAQLQEQ 247 (325)
T ss_pred hh-HHHhhhheEEeeCCcEeecccHHHHHHH
Confidence 86 6799999999999999999998887653
No 347
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.60 E-value=3.9e-15 Score=139.62 Aligned_cols=107 Identities=19% Similarity=0.288 Sum_probs=84.8
Q ss_pred CCCCCHHHHHHHHHhcCCCCCC--C----HHHHHHHHh-----------hh-hhhcccCCccc-----------------
Q psy8953 48 RPKLTVTEAMMIASHLKLGFKV--S----TQEKKDQVS-----------LE-LWNNFCKKKKK----------------- 92 (286)
Q Consensus 48 ~~~~tV~e~l~f~~~~~~~~~~--~----~~~~~~~v~-----------l~-~~~~~~gG~kq----------------- 92 (286)
+..+.+.+.+.|...+.++... . -+|+.+|+. |. ...|+||||-|
T Consensus 426 ~~~msi~~~~~f~~~l~l~~~~~~ia~~ilkei~~RL~fL~~VGL~YLtL~R~a~TLSGGEaQRIRLAtqiGS~LtGVlY 505 (935)
T COG0178 426 ISEMSIADALEFFENLKLSEKEKKIAEPILKEIKERLGFLVDVGLGYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLY 505 (935)
T ss_pred HhhccHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHcCcCcccccccCCCcChhHHHHHHHHHHhcccceeeEE
Confidence 4667888888888887654210 0 123334443 33 56789999999
Q ss_pred ----cCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHhhhHhhh------cCCeeecccChhcHHH
Q psy8953 93 ----KKRGLDSSSCSQCVSLLANLAKQGRTVVATIHTPSALLFEKFDSLYAL------AKGHCIYRGSISRLVP 156 (286)
Q Consensus 93 ----ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~~~~~~~~~~d~v~~l------~~G~i~~~g~~~~~~~ 156 (286)
|+.||.+.--..+.+.|++|+.-|-|+|++||+.+ ....+|+|+=| ..|+|++.|++++++.
T Consensus 506 VLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDed--ti~~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~ 577 (935)
T COG0178 506 VLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDED--TIRAADHIIDIGPGAGEHGGEIVAEGTPEELLA 577 (935)
T ss_pred EecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCHH--HHhhcCEEEeeCCCCCcCCCEEEEccCHHHHHh
Confidence 99999999999999999999999999999999974 44779999877 5689999999999875
No 348
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.60 E-value=2.3e-15 Score=117.36 Aligned_cols=144 Identities=17% Similarity=0.226 Sum_probs=117.2
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
|||||-- ||..+ .+|+|.++|++...++..++++.-+|..|+-.-.+.+-|+..++..- | .+++...++
T Consensus 38 KSTLLA~lAGm~~--~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~YL~L~q----P----~~~~a~~i~ 107 (248)
T COG4138 38 KSTLLARMAGMTS--GSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHYLTLHQ----P----DKTRTELLN 107 (248)
T ss_pred HHHHHHHHhCCCC--CCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhhhhhhcC----c----hHHHHHHHH
Confidence 8999999 99888 68999999999998888888999999999865444455555544321 2 222222221
Q ss_pred -----------hh-hhhcccCCccc--------------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEE
Q psy8953 80 -----------LE-LWNNFCKKKKK--------------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVA 121 (286)
Q Consensus 80 -----------l~-~~~~~~gG~kq--------------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~ 121 (286)
|- ..+.+||||-| |.++||.+....+..+|.++.+.|.+||+
T Consensus 108 ~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vim 187 (248)
T COG4138 108 DVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVM 187 (248)
T ss_pred HHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEE
Confidence 23 66789999988 88999999999999999999999999999
Q ss_pred EEcCCCHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 122 TIHTPSALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 122 ~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
+.|+..- ....+|++.+++.|+++..|..++++
T Consensus 188 s~HDLNh-TLrhA~~~wLL~rG~l~~~G~~~eVl 220 (248)
T COG4138 188 SSHDLNH-TLRHAHRAWLLKRGKLLASGRREEVL 220 (248)
T ss_pred eccchhh-HHHHHHHHHHHhcCeEEeecchhhhc
Confidence 9999975 45779999999999999999999886
No 349
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.59 E-value=4.9e-15 Score=116.40 Aligned_cols=152 Identities=20% Similarity=0.249 Sum_probs=127.2
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcc--cCCCCCHHHHHHHHHhcCCCCCCCHHHHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDA--LRPKLTVTEAMMIASHLKLGFKVSTQEKKDQ 77 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~--~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~ 77 (286)
||||... +|..+. .+|+|++||++..-.++....+.+-++||||. +-|.+.+..-+.+.+++ +-...++.+.++
T Consensus 52 KSTLakMlaGmi~P-TsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l--~T~~~~~~R~~~ 128 (267)
T COG4167 52 KSTLAKMLAGMIEP-TSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRL--NTDLEPEQRRKQ 128 (267)
T ss_pred HhHHHHHHhcccCC-CCceEEECCccccccchHhhhhheeeeecCCccccChhhhhhhHhcchhhh--cccCChHHHHHH
Confidence 7999999 998766 79999999999876545555689999999994 56999888888887765 556677777776
Q ss_pred Hh-------hh------hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC-CCEEEEEEc
Q psy8953 78 VS-------LE------LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ-GRTVVATIH 124 (286)
Q Consensus 78 v~-------l~------~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~-g~tii~~~h 124 (286)
|- |. .++.++-|||| ...+||...+.++.++.-+|.++ |+.-|-+.+
T Consensus 129 i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~Q 208 (267)
T COG4167 129 IFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQ 208 (267)
T ss_pred HHHHHHHhccCccccccchhhcCchhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEec
Confidence 65 11 45678899999 45699999999999999999986 999999999
Q ss_pred CCCHHHHHHhhhHhhhcCCeeecccChhcHHH
Q psy8953 125 TPSALLFEKFDSLYALAKGHCIYRGSISRLVP 156 (286)
Q Consensus 125 ~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 156 (286)
+.- .+-...|.|+||++|+++..|++.+++.
T Consensus 209 hlG-~iKHi~D~viVM~EG~vvE~G~t~~v~a 239 (267)
T COG4167 209 HIG-MIKHISDQVLVMHEGEVVERGSTADVLA 239 (267)
T ss_pred hhh-HhhhhcccEEEEecCceeecCChhhhhc
Confidence 886 5778899999999999999999888764
No 350
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.59 E-value=4.7e-15 Score=140.38 Aligned_cols=137 Identities=19% Similarity=0.233 Sum_probs=103.2
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcc-cCCCCCHHHHHHHHHhcC-CCCCCCHHHHH--
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDA-LRPKLTVTEAMMIASHLK-LGFKVSTQEKK-- 75 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~-~~~~~tV~e~l~f~~~~~-~~~~~~~~~~~-- 75 (286)
|||||++ +|..+. .+|+|.+++. ..+|||+|++. +++.+||.|++.|+.... .. . ...+.+
T Consensus 361 KSTLl~~l~G~~~p-~~G~i~~~~~-----------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~-~-~~~~~~~~ 426 (552)
T TIGR03719 361 KSTLFRMITGQEQP-DSGTIKIGET-----------VKLAYVDQSRDALDPNKTVWEEISGGLDIIQLG-K-REVPSRAY 426 (552)
T ss_pred HHHHHHHHcCCCCC-CCeEEEECCc-----------eEEEEEeCCccccCCCCcHHHHHHhhccccccC-c-chHHHHHH
Confidence 8999999 997543 6899999541 15999999974 789999999999986421 21 1 111222
Q ss_pred -HHHhhh------hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcCCCHH
Q psy8953 76 -DQVSLE------LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVATIHTPSAL 129 (286)
Q Consensus 76 -~~v~l~------~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~~~~~ 129 (286)
+++.+. ...++|||||| ||++||+.++..+.++|+++. + |||+++|+++ .
T Consensus 427 l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-~viivsHd~~-~ 502 (552)
T TIGR03719 427 VGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA--G-CAVVISHDRW-F 502 (552)
T ss_pred HHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC--C-eEEEEeCCHH-H
Confidence 222231 34678999999 999999999999999999883 4 8999999986 4
Q ss_pred HHHHhhhHhhhcC-Ceee-cccChhcHH
Q psy8953 130 LFEKFDSLYALAK-GHCI-YRGSISRLV 155 (286)
Q Consensus 130 ~~~~~d~v~~l~~-G~i~-~~g~~~~~~ 155 (286)
+..++|++++|++ |++. +.|+..+..
T Consensus 503 ~~~~~d~i~~l~~~~~~~~~~g~~~~~~ 530 (552)
T TIGR03719 503 LDRIATHILAFEGDSHVEWFEGNYSEYE 530 (552)
T ss_pred HHHhCCEEEEEECCCeEEEeCCCHHHHH
Confidence 6678999999986 6776 677765544
No 351
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.58 E-value=2.2e-15 Score=156.45 Aligned_cols=132 Identities=17% Similarity=0.200 Sum_probs=104.2
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
|||||++ +|..+. .+|+|.+|| .++||+|+|.++ +.||+|+|.|+.+. +.++.++.++
T Consensus 677 KSTLl~~l~g~~~~-~~G~i~~~g-------------~i~yv~Q~~~l~-~~Ti~eNI~~g~~~------~~~~~~~~~~ 735 (1522)
T TIGR00957 677 KSSLLSALLAEMDK-VEGHVHMKG-------------SVAYVPQQAWIQ-NDSLRENILFGKAL------NEKYYQQVLE 735 (1522)
T ss_pred HHHHHHHHhCCCcc-CCcEEEECC-------------EEEEEcCCcccc-CCcHHHHhhcCCcc------CHHHHHHHHH
Confidence 8999999 996554 689999987 389999999765 67999999997542 2333332222
Q ss_pred -------hh------------hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHH--hCCCEE
Q psy8953 80 -------LE------------LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLA--KQGRTV 119 (286)
Q Consensus 80 -------l~------------~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~--~~g~ti 119 (286)
+. ...++|||||| ||++||+.+...+++.+..+. .+++|+
T Consensus 736 ~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tv 815 (1522)
T TIGR00957 736 ACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTR 815 (1522)
T ss_pred HhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEE
Confidence 11 12358899999 999999999999999997642 247999
Q ss_pred EEEEcCCCHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 120 VATIHTPSALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 120 i~~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
|+++|+++. + ..+|++++|++|+++..|+.+++.
T Consensus 816 IlvTH~~~~-l-~~~D~ii~l~~G~i~~~g~~~~l~ 849 (1522)
T TIGR00957 816 ILVTHGISY-L-PQVDVIIVMSGGKISEMGSYQELL 849 (1522)
T ss_pred EEEeCChhh-h-hhCCEEEEecCCeEEeeCCHHHHH
Confidence 999999964 4 559999999999999999987764
No 352
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.58 E-value=2.7e-15 Score=155.42 Aligned_cols=131 Identities=18% Similarity=0.217 Sum_probs=103.3
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
|||||++ +|..+. .+|+|.++| .++||+|+|.++.. ||+|+|.|+... ..+..++.++
T Consensus 465 KSTLl~~l~G~~~~-~~G~i~~~g-------------~iayv~Q~~~l~~~-Ti~eNI~~g~~~------~~~~~~~~~~ 523 (1490)
T TIGR01271 465 KSSLLMMIMGELEP-SEGKIKHSG-------------RISFSPQTSWIMPG-TIKDNIIFGLSY------DEYRYTSVIK 523 (1490)
T ss_pred HHHHHHHHhCCCCC-CCceEEECC-------------EEEEEeCCCccCCc-cHHHHHHhcccc------chHHHHHHHH
Confidence 8999999 997654 689999998 28999999988775 999999998642 1111111111
Q ss_pred -------hh------------hhhcccCCccc-------------------cCCCcchHHHHHHHH-HHHHHHhCCCEEE
Q psy8953 80 -------LE------------LWNNFCKKKKK-------------------KKRGLDSSSCSQCVS-LLANLAKQGRTVV 120 (286)
Q Consensus 80 -------l~------------~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~-~l~~l~~~g~tii 120 (286)
+. ...++|||||| |+++||+.++..+++ +++.+. +|+|+|
T Consensus 524 ~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~-~~~tvi 602 (1490)
T TIGR01271 524 ACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLM-SNKTRI 602 (1490)
T ss_pred HHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCCeEE
Confidence 11 12468899999 999999999999997 466665 489999
Q ss_pred EEEcCCCHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 121 ATIHTPSALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 121 ~~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
+++|++.. + ..+|++++|++|+++..|+.+++.
T Consensus 603 lvtH~~~~-~-~~ad~ii~l~~g~i~~~g~~~~l~ 635 (1490)
T TIGR01271 603 LVTSKLEH-L-KKADKILLLHEGVCYFYGTFSELQ 635 (1490)
T ss_pred EEeCChHH-H-HhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999964 4 569999999999999999988764
No 353
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.56 E-value=5.4e-15 Score=123.87 Aligned_cols=121 Identities=20% Similarity=0.195 Sum_probs=96.5
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
||||-++ .|+... .+|+|+++|+++... . ..|...- ..|+.+.|.
T Consensus 52 KSTlgr~i~~L~~p-t~G~i~f~g~~i~~~-----~-----------------~~~~~~~-----------v~elL~~Vg 97 (268)
T COG4608 52 KSTLGRLILGLEEP-TSGEILFEGKDITKL-----S-----------------KEERRER-----------VLELLEKVG 97 (268)
T ss_pred HHHHHHHHHcCcCC-CCceEEEcCcchhhc-----c-----------------hhHHHHH-----------HHHHHHHhC
Confidence 8999999 997654 899999999987552 1 0000000 112222232
Q ss_pred -----hh-hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC-CCEEEEEEcCCCHHHHHH
Q psy8953 80 -----LE-LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ-GRTVVATIHTPSALLFEK 133 (286)
Q Consensus 80 -----l~-~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~-g~tii~~~h~~~~~~~~~ 133 (286)
+. ++|.+||||+| |+|.||...+.+++++|++|+++ |.|.+.+.|+.+ .+...
T Consensus 98 l~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~-vv~~i 176 (268)
T COG4608 98 LPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLS-VVRYI 176 (268)
T ss_pred CCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHH-hhhhh
Confidence 33 88999999999 99999999999999999999986 999999999986 57788
Q ss_pred hhhHhhhcCCeeecccChhcHHH
Q psy8953 134 FDSLYALAKGHCIYRGSISRLVP 156 (286)
Q Consensus 134 ~d~v~~l~~G~i~~~g~~~~~~~ 156 (286)
+||++||..|+|+..|+.++++.
T Consensus 177 sdri~VMy~G~iVE~g~~~~~~~ 199 (268)
T COG4608 177 SDRIAVMYLGKIVEIGPTEEVFS 199 (268)
T ss_pred cccEEEEecCceeEecCHHHHhh
Confidence 99999999999999999988863
No 354
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.55 E-value=5.5e-14 Score=124.45 Aligned_cols=82 Identities=16% Similarity=0.152 Sum_probs=62.2
Q ss_pred CCHHHHHHHHHhcCCCCCCCHHHHHHHHhhh-----hhhcccCCccc-------------------cCCCcchHHHHHHH
Q psy8953 51 LTVTEAMMIASHLKLGFKVSTQEKKDQVSLE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCV 106 (286)
Q Consensus 51 ~tV~e~l~f~~~~~~~~~~~~~~~~~~v~l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~ 106 (286)
-||.|-|.=..|.+ ..+|.-+++.|+ ..+.+||||-| |+|-||...+....
T Consensus 179 G~v~elLk~~de~g-----~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~a 253 (591)
T COG1245 179 GKVGELLKKVDERG-----KFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAA 253 (591)
T ss_pred chHHHHHHhhhhcC-----cHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHH
Confidence 37777776666532 256666666643 45679999999 99999999999999
Q ss_pred HHHHHHHhCCCEEEEEEcCCCHHHHHH-hhhHhh
Q psy8953 107 SLLANLAKQGRTVVATIHTPSALLFEK-FDSLYA 139 (286)
Q Consensus 107 ~~l~~l~~~g~tii~~~h~~~~~~~~~-~d~v~~ 139 (286)
+++++|++.+++|+++||++. +.++ .|.|.+
T Consensus 254 r~Irel~~~~k~ViVVEHDLa--vLD~lsD~vhI 285 (591)
T COG1245 254 RVIRELAEDGKYVIVVEHDLA--VLDYLSDFVHI 285 (591)
T ss_pred HHHHHHhccCCeEEEEechHH--HHHHhhheeEE
Confidence 999999999999999999974 3343 444433
No 355
>PLN03130 ABC transporter C family member; Provisional
Probab=99.55 E-value=6.3e-15 Score=153.20 Aligned_cols=131 Identities=15% Similarity=0.175 Sum_probs=102.4
Q ss_pred Cchhhhh-cCCCCCCce-eEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHH
Q psy8953 1 MSIELNV-QSIRLTGSS-GKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQV 78 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~-G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v 78 (286)
||||++. .|..+. .+ |+|.+ +..++||+|+|.+|. .||+|+|.|+.+. ++++..+-+
T Consensus 656 KSTLl~lLlG~~~~-~~GG~I~l-------------~~~Iayv~Q~p~Lfn-gTIreNI~fg~~~------d~e~y~~vl 714 (1622)
T PLN03130 656 KTSLISAMLGELPP-RSDASVVI-------------RGTVAYVPQVSWIFN-ATVRDNILFGSPF------DPERYERAI 714 (1622)
T ss_pred HHHHHHHHHHhhcc-CCCceEEE-------------cCeEEEEcCccccCC-CCHHHHHhCCCcc------cHHHHHHHH
Confidence 8999999 996554 56 88875 346999999998875 6999999998642 355555444
Q ss_pred h---hh----------------hhhcccCCccc-------------------cCCCcchHHHHHHH-HHHHHHHhCCCEE
Q psy8953 79 S---LE----------------LWNNFCKKKKK-------------------KKRGLDSSSCSQCV-SLLANLAKQGRTV 119 (286)
Q Consensus 79 ~---l~----------------~~~~~~gG~kq-------------------ptsgLD~~~~~~~~-~~l~~l~~~g~ti 119 (286)
+ |. ...++|||||| |||+||+.....++ ++++.+. .++|+
T Consensus 715 ~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l-~~kTv 793 (1622)
T PLN03130 715 DVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDEL-RGKTR 793 (1622)
T ss_pred HHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHh-cCCEE
Confidence 4 11 12347899999 99999999998886 4566553 48999
Q ss_pred EEEEcCCCHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 120 VATIHTPSALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 120 i~~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
|+++|++.. ...+|+|++|++|+++..|+.+++.
T Consensus 794 IlVTH~l~~--l~~aD~Ii~L~~G~i~e~Gt~~eL~ 827 (1622)
T PLN03130 794 VLVTNQLHF--LSQVDRIILVHEGMIKEEGTYEELS 827 (1622)
T ss_pred EEEECCHhH--HHhCCEEEEEeCCEEEEeCCHHHHH
Confidence 999999853 4679999999999999999987764
No 356
>PLN03232 ABC transporter C family member; Provisional
Probab=99.55 E-value=5.6e-15 Score=153.22 Aligned_cols=132 Identities=14% Similarity=0.149 Sum_probs=100.8
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
||||++. .|..+. .+|.+. .++..++||+|+|.+|. .|++|||.|+.+ .++++..+-++
T Consensus 656 KSTLl~lLlG~~~~-~~G~i~------------~~~~~Iayv~Q~p~Lf~-gTIreNI~fg~~------~~~e~~~~vl~ 715 (1495)
T PLN03232 656 KTSLISAMLGELSH-AETSSV------------VIRGSVAYVPQVSWIFN-ATVRENILFGSD------FESERYWRAID 715 (1495)
T ss_pred HHHHHHHHhCCCcc-cCCCEE------------EecCcEEEEcCcccccc-ccHHHHhhcCCc------cCHHHHHHHHH
Confidence 8999999 996543 344331 24678999999998885 599999999853 24555555444
Q ss_pred ---h----h------------hhhcccCCccc-------------------cCCCcchHHHHHHHHH-HHHHHhCCCEEE
Q psy8953 80 ---L----E------------LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSL-LANLAKQGRTVV 120 (286)
Q Consensus 80 ---l----~------------~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~-l~~l~~~g~tii 120 (286)
| . ....+|||||| |||+||+.+...+++. ++.+. .++|+|
T Consensus 716 ~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l-~~kT~I 794 (1495)
T PLN03232 716 VTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDEL-KGKTRV 794 (1495)
T ss_pred HhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhh-cCCEEE
Confidence 1 1 11247899999 9999999999988754 55443 589999
Q ss_pred EEEcCCCHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 121 ATIHTPSALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 121 ~~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
+++|+++. ...+|+|++|++|+++..|+.+++.
T Consensus 795 lvTH~~~~--l~~aD~Ii~L~~G~i~~~Gt~~eL~ 827 (1495)
T PLN03232 795 LVTNQLHF--LPLMDRIILVSEGMIKEEGTFAELS 827 (1495)
T ss_pred EEECChhh--HHhCCEEEEEeCCEEEEecCHHHHH
Confidence 99999863 4679999999999999999987764
No 357
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.53 E-value=1.2e-14 Score=117.19 Aligned_cols=110 Identities=15% Similarity=0.153 Sum_probs=82.2
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
||||+++ +|..+. .+|+|.++|++ ++|++|++. + |.-++ +|+.
T Consensus 38 KSTLl~~l~Gl~~p-~~G~i~~~g~~------------i~~~~q~~~------------------L----SgGq~-qrv~ 81 (177)
T cd03222 38 KTTAVKILAGQLIP-NGDNDEWDGIT------------PVYKPQYID------------------L----SGGEL-QRVA 81 (177)
T ss_pred HHHHHHHHHcCCCC-CCcEEEECCEE------------EEEEcccCC------------------C----CHHHH-HHHH
Confidence 8999999 997544 68999999853 789999754 1 22221 2222
Q ss_pred hh----------hhhcccCCccccCCCcchHHHHHHHHHHHHHHhC-CCEEEEEEcCCCHHHHHHhhhHhhhcCCeeecc
Q psy8953 80 LE----------LWNNFCKKKKKKKRGLDSSSCSQCVSLLANLAKQ-GRTVVATIHTPSALLFEKFDSLYALAKGHCIYR 148 (286)
Q Consensus 80 l~----------~~~~~~gG~kqptsgLD~~~~~~~~~~l~~l~~~-g~tii~~~h~~~~~~~~~~d~v~~l~~G~i~~~ 148 (286)
+. ..|. ||++||+.++..+.+.+++++++ +.|||+++|+++ .+..++|++++|+++-.++.
T Consensus 82 laral~~~p~lllLDE-------Pts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~~~~~~~ 153 (177)
T cd03222 82 IAAALLRNATFYLFDE-------PSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLA-VLDYLSDRIHVFEGEPGVYG 153 (177)
T ss_pred HHHHHhcCCCEEEEEC-------CcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHH-HHHHhCCEEEEEcCCCccce
Confidence 00 2223 99999999999999999999877 499999999986 46678999999998776655
Q ss_pred --cChhcH
Q psy8953 149 --GSISRL 154 (286)
Q Consensus 149 --g~~~~~ 154 (286)
|.|...
T Consensus 154 ~~~~~~~~ 161 (177)
T cd03222 154 IASQPKGT 161 (177)
T ss_pred eccCCcch
Confidence 555543
No 358
>KOG0927|consensus
Probab=99.53 E-value=4.4e-14 Score=127.34 Aligned_cols=191 Identities=19% Similarity=0.235 Sum_probs=102.1
Q ss_pred hcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHhhhHhhhcCCe
Q psy8953 84 NNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVATIHTPSALLFEKFDSLYALAKGH 144 (286)
Q Consensus 84 ~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~~~~~~~~~~d~v~~l~~G~ 144 (286)
..+|||++. ||.+||..++.-+-..|...-. .++|++.|.-+ .+-.+|.+|+-|.+++
T Consensus 220 ~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~--~~lVi~sh~QD-fln~vCT~Ii~l~~kk 296 (614)
T KOG0927|consen 220 KDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDR--IILVIVSHSQD-FLNGVCTNIIHLDNKK 296 (614)
T ss_pred hccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccC--ceEEEEecchh-hhhhHhhhhheecccc
Confidence 347799887 9999999999888777765532 27888888865 5779999999999998
Q ss_pred -eecccChhcHHHHHHhCCC-CCCCC---CCCCCccccccCCceeeeeccCchhhHHHH----HHHHHHHhcCcceecCC
Q psy8953 145 -CIYRGSISRLVPHLASLGL-PCPAY---HNPADFPNLAKQGRTVVATIHTPSALLFEK----FDSLYALAKGHCIYRGS 215 (286)
Q Consensus 145 -i~~~g~~~~~~~~~~~~g~-~~p~~---~~~~~~~~~~~~g~tii~~~h~p~~~l~~~----~d~~~~l~~g~~~~~g~ 215 (286)
+.|.|+-+....-....-- ...++ ..+. ...+..++..+.-+..+... -.....+...... ...
T Consensus 297 l~~y~Gnydqy~~tr~E~~~~q~K~~~kqqk~i------~~~K~~ia~~g~g~a~~~rka~s~~K~~~km~~~gL~-ek~ 369 (614)
T KOG0927|consen 297 LIYYEGNYDQYVKTRSELEENQMKAYEKQQKQI------AHMKDLIARFGHGSAKLGRKAQSKEKTLDKMEADGLT-EKV 369 (614)
T ss_pred eeeecCCHHHHhhHHHHHhHHHHHHHHHHHhHH------HHhhHHHHhhcccchhhhHHHhhhhhhHHHHhhcccc-ccc
Confidence 7788886654321000000 00000 0000 00000000000000000000 0000011110000 000
Q ss_pred ccc--cccccccCCCCCC---CCCC-CCccccc-ccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCC
Q psy8953 216 ISR--LVPHLASLGLPCP---AYHN-PADFLNK-EILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLNFS 284 (286)
Q Consensus 216 ~~~--~~~~~~~~g~~~~---~~~~-~~~~~~~-~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~~~ 284 (286)
..+ ....+...|...+ ...+ ...|.+. .++++++|-|..++++|+|||||+|||||+|+++|.+.++--
T Consensus 370 ~~~k~l~~~f~~vg~~p~pvi~~~nv~F~y~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G 445 (614)
T KOG0927|consen 370 VGEKVLSFRFPEVGKIPPPVIMVQNVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIG 445 (614)
T ss_pred cCCceEEEEcccccCCCCCeEEEeccccCCCCcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccc
Confidence 000 0111222221001 0011 1122222 488999999999999999999999999999999999998754
No 359
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.52 E-value=9.8e-15 Score=122.23 Aligned_cols=41 Identities=44% Similarity=0.716 Sum_probs=39.1
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
.++|+||||+|++||+++|+||||||||||+|+|.||++|.
T Consensus 17 ~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~ 57 (254)
T COG1121 17 RPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPS 57 (254)
T ss_pred EeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCC
Confidence 36999999999999999999999999999999999999985
No 360
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.52 E-value=2.2e-14 Score=137.68 Aligned_cols=135 Identities=19% Similarity=0.206 Sum_probs=101.2
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCc--ccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDD--ALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQ 77 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~--~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~ 77 (286)
|||||++ +|..+. .+|+|.+++. ..+||++|+. .+.+..||.+++.... .....++..+.
T Consensus 351 KSTLlk~l~G~~~p-~~G~i~~~~~-----------~~igy~~Q~~~~~l~~~~~~~~~~~~~~-----~~~~~~~~~~~ 413 (638)
T PRK10636 351 KSTLIKLLAGELAP-VSGEIGLAKG-----------IKLGYFAQHQLEFLRADESPLQHLARLA-----PQELEQKLRDY 413 (638)
T ss_pred HHHHHHHHhCCCCC-CCCeEEECCC-----------EEEEEecCcchhhCCccchHHHHHHHhC-----chhhHHHHHHH
Confidence 8999999 997643 6899999741 2589999985 2457778888764211 11112222222
Q ss_pred Hh---h-----h-hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcCCCHH
Q psy8953 78 VS---L-----E-LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVATIHTPSAL 129 (286)
Q Consensus 78 v~---l-----~-~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~~~~~ 129 (286)
+. + . ....+|||||| ||++||+.++..+.++|+++ .| |||+++|+.+ .
T Consensus 414 L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~g-tvi~vSHd~~-~ 489 (638)
T PRK10636 414 LGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF--EG-ALVVVSHDRH-L 489 (638)
T ss_pred HHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-eEEEEeCCHH-H
Confidence 22 2 1 34568999999 99999999999999999987 34 9999999985 4
Q ss_pred HHHHhhhHhhhcCCeee-cccChhcHHH
Q psy8953 130 LFEKFDSLYALAKGHCI-YRGSISRLVP 156 (286)
Q Consensus 130 ~~~~~d~v~~l~~G~i~-~~g~~~~~~~ 156 (286)
+...||++++|++|+++ +.|+..+...
T Consensus 490 ~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 517 (638)
T PRK10636 490 LRSTTDDLYLVHDGKVEPFDGDLEDYQQ 517 (638)
T ss_pred HHHhCCEEEEEECCEEEEcCCCHHHHHH
Confidence 66889999999999997 8999887643
No 361
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.51 E-value=2.4e-14 Score=137.91 Aligned_cols=127 Identities=12% Similarity=0.136 Sum_probs=94.8
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCC--CCCCCHHHHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKL--GFKVSTQEKKDQ 77 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~--~~~~~~~~~~~~ 77 (286)
||||+++ +|+.+. .+|+|.+++ ++.++||+|++.+++. ||+|++.++..... ....+.+++.+.
T Consensus 491 KSTLl~lL~Gl~~~-~~G~i~~~~-----------~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~i~~~ 557 (659)
T TIGR00954 491 KSSLFRILGELWPV-YGGRLTKPA-----------KGKLFYVPQRPYMTLG-TLRDQIIYPDSSEDMKRRGLSDKDLEQI 557 (659)
T ss_pred HHHHHHHHhCCCCC-CCCeEeecC-----------CCcEEEECCCCCCCCc-CHHHHHhcCCChhhhhccCCCHHHHHHH
Confidence 8999999 997543 578998764 3569999999987776 99999998653210 011234444433
Q ss_pred Hh---hh-h-------------hhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEE
Q psy8953 78 VS---LE-L-------------WNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVA 121 (286)
Q Consensus 78 v~---l~-~-------------~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~ 121 (286)
++ +. . .+.+|||||| ||++||+.+...+.+.+++. |+|+|+
T Consensus 558 l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~~---~~tvI~ 634 (659)
T TIGR00954 558 LDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREF---GITLFS 634 (659)
T ss_pred HHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHc---CCEEEE
Confidence 33 22 1 1579999999 99999999999999888763 899999
Q ss_pred EEcCCCHHHHHHhhhHhhhc-CCee
Q psy8953 122 TIHTPSALLFEKFDSLYALA-KGHC 145 (286)
Q Consensus 122 ~~h~~~~~~~~~~d~v~~l~-~G~i 145 (286)
++|+++. + ..+|++++|+ +|.+
T Consensus 635 isH~~~~-~-~~~d~il~l~~~g~~ 657 (659)
T TIGR00954 635 VSHRKSL-W-KYHEYLLYMDGRGGY 657 (659)
T ss_pred EeCchHH-H-HhCCEEEEEeCCCCc
Confidence 9999864 3 7799999997 3543
No 362
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.51 E-value=5e-15 Score=121.74 Aligned_cols=148 Identities=14% Similarity=0.194 Sum_probs=118.0
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhh-hcccceeeEEecCc--ccCCCCCHHHHHHHHH--hcCCCC-CCCHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACI-EQFLKLSCYIQQDD--ALRPKLTVTEAMMIAS--HLKLGF-KVSTQE 73 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~-~~~~~~~g~v~Q~~--~~~~~~tV~e~l~f~~--~~~~~~-~~~~~~ 73 (286)
|||||++ +|+.+.. +|.+.+.|+...+.+. .++++.+|||.-.- .+.+..+|+|-+.=+. -.++.. ..+.++
T Consensus 70 KTTLL~ll~~~~~ps-sg~~~~~G~~~G~~~~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~ 148 (257)
T COG1119 70 KTTLLSLLTGEHPPS-SGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAED 148 (257)
T ss_pred HHHHHHHHhcccCCC-CCceeeeeeeccCCcchHHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHH
Confidence 8999999 9988775 9999999999987655 78899999998753 4668899999886444 355554 344444
Q ss_pred HHHHHh---------hh--hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC--CCEEEE
Q psy8953 74 KKDQVS---------LE--LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ--GRTVVA 121 (286)
Q Consensus 74 ~~~~v~---------l~--~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~--g~tii~ 121 (286)
..+... +. .-.++|-||+| |++|||..++..+.+.|.+++.. +.++|+
T Consensus 149 ~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~ 228 (257)
T COG1119 149 LAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLF 228 (257)
T ss_pred HHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEE
Confidence 332222 11 23467889888 99999999999999999999875 889999
Q ss_pred EEcCCCHHHHHHhhhHhhhcCCeeecccC
Q psy8953 122 TIHTPSALLFEKFDSLYALAKGHCIYRGS 150 (286)
Q Consensus 122 ~~h~~~~~~~~~~d~v~~l~~G~i~~~g~ 150 (286)
++|++++ +...|+|++++++|++++.|.
T Consensus 229 VtHh~eE-i~~~~th~lll~~g~v~~~g~ 256 (257)
T COG1119 229 VTHHAEE-IPPCFTHRLLLKEGEVVAQGK 256 (257)
T ss_pred EEcchhh-cccccceEEEeeCCceeeccc
Confidence 9999975 568899999999999999874
No 363
>KOG0056|consensus
Probab=99.50 E-value=9.2e-15 Score=130.28 Aligned_cols=146 Identities=21% Similarity=0.237 Sum_probs=109.1
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHH------
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQE------ 73 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~------ 73 (286)
|||+|.+ -.+-. -.+|+|.|||+++..-....+++.+|.||||-.+| +.|...+|.|+- | .-+.||
T Consensus 577 KSTimRlLfRffd-v~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLF-NdTI~yNIryak----~-~AsneevyaAAk 649 (790)
T KOG0056|consen 577 KSTIMRLLFRFFD-VNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLF-NDTILYNIRYAK----P-SASNEEVYAAAK 649 (790)
T ss_pred hhHHHHHHHHHhh-ccCceEEEcCchHHHHHHHHHHHhcCcccCcceee-cceeeeheeecC----C-CCChHHHHHHHH
Confidence 7888888 54332 37899999999998766678899999999987654 444544544432 1 112333
Q ss_pred ---HHHHHh--hh--------hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEE
Q psy8953 74 ---KKDQVS--LE--------LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVA 121 (286)
Q Consensus 74 ---~~~~v~--l~--------~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~ 121 (286)
+.+|+- -+ ..-.+|||||| .||.||..+-+++-..|.++.. ++|-|+
T Consensus 650 AA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca-~RTtIV 728 (790)
T KOG0056|consen 650 AAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCA-NRTTIV 728 (790)
T ss_pred HhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhc-CCceEE
Confidence 334443 11 12247899999 8899999999999999999987 678888
Q ss_pred EEcCCCHHHHHHhhhHhhhcCCeeecccChhcHHH
Q psy8953 122 TIHTPSALLFEKFDSLYALAKGHCIYRGSISRLVP 156 (286)
Q Consensus 122 ~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 156 (286)
+.||.+..+ .+|.++++++|+|+..|..+++..
T Consensus 729 vAHRLSTiv--nAD~ILvi~~G~IvErG~HeeLl~ 761 (790)
T KOG0056|consen 729 VAHRLSTIV--NADLILVISNGRIVERGRHEELLK 761 (790)
T ss_pred Eeeeehhee--cccEEEEEeCCeEeecCcHHHHHh
Confidence 899998543 399999999999999999888764
No 364
>PTZ00243 ABC transporter; Provisional
Probab=99.49 E-value=4.5e-14 Score=146.66 Aligned_cols=132 Identities=20% Similarity=0.203 Sum_probs=98.7
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHH--
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQ-- 77 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~-- 77 (286)
|||||++ +|..+. .+|+|.++ +.+|||+|+|.++ +.||+|+|.|+... ..++..+.
T Consensus 699 KSTLL~~i~G~~~~-~~G~i~~~-------------~~i~yv~Q~~~l~-~~Tv~enI~~~~~~------~~~~~~~~~~ 757 (1560)
T PTZ00243 699 KSTLLQSLLSQFEI-SEGRVWAE-------------RSIAYVPQQAWIM-NATVRGNILFFDEE------DAARLADAVR 757 (1560)
T ss_pred HHHHHHHHhcCCCC-CCcEEEEC-------------CeEEEEeCCCccC-CCcHHHHHHcCChh------hHHHHHHHHH
Confidence 8999999 996544 67998763 4599999999865 57999999996421 11111111
Q ss_pred -------Hh-h--------h-hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEE
Q psy8953 78 -------VS-L--------E-LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVA 121 (286)
Q Consensus 78 -------v~-l--------~-~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~ 121 (286)
++ + . ...++|||||| ||++||+.++..+++.+-.....|+|+|+
T Consensus 758 ~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIl 837 (1560)
T PTZ00243 758 VSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVL 837 (1560)
T ss_pred HhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEE
Confidence 11 1 1 33568899999 99999999999988743222225899999
Q ss_pred EEcCCCHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 122 TIHTPSALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 122 ~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
++|+++. + ..+|++++|++|++++.|+.+++.
T Consensus 838 vTH~~~~-~-~~ad~ii~l~~G~i~~~G~~~~l~ 869 (1560)
T PTZ00243 838 ATHQVHV-V-PRADYVVALGDGRVEFSGSSADFM 869 (1560)
T ss_pred EeCCHHH-H-HhCCEEEEEECCEEEEecCHHHHH
Confidence 9999864 3 679999999999999999987764
No 365
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.49 E-value=3.5e-14 Score=112.67 Aligned_cols=109 Identities=29% Similarity=0.441 Sum_probs=83.4
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
||||+++ +|..+. .+|+|+++|.++.......+.+.++|++| + +.-|+ +|+.
T Consensus 38 KStll~~l~g~~~~-~~G~i~~~~~~~~~~~~~~~~~~i~~~~q---------------------l----S~G~~-~r~~ 90 (157)
T cd00267 38 KSTLLRAIAGLLKP-TSGEILIDGKDIAKLPLEELRRRIGYVPQ---------------------L----SGGQR-QRVA 90 (157)
T ss_pred HHHHHHHHhCCCCC-CccEEEECCEEcccCCHHHHHhceEEEee---------------------C----CHHHH-HHHH
Confidence 7999999 997554 79999999998764333456788999999 1 12221 2222
Q ss_pred h----------hhhhcccCCccccCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHhhhHhhhcCCe
Q psy8953 80 L----------ELWNNFCKKKKKKKRGLDSSSCSQCVSLLANLAKQGRTVVATIHTPSALLFEKFDSLYALAKGH 144 (286)
Q Consensus 80 l----------~~~~~~~gG~kqptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~~~~~~~~~~d~v~~l~~G~ 144 (286)
+ .+.|. ||++||+.++..+.+.|+++...+.|+++++|+++. +..++|+++++++|+
T Consensus 91 l~~~l~~~~~i~ilDE-------p~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~-~~~~~d~i~~l~~g~ 157 (157)
T cd00267 91 LARALLLNPDLLLLDE-------PTSGLDPASRERLLELLRELAEEGRTVIIVTHDPEL-AELAADRVIVLKDGK 157 (157)
T ss_pred HHHHHhcCCCEEEEeC-------CCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHhCCEEEEEeCcC
Confidence 0 03333 999999999999999999998778999999999864 556689999998874
No 366
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.49 E-value=6e-14 Score=134.81 Aligned_cols=137 Identities=15% Similarity=0.182 Sum_probs=100.6
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCc-ccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDD-ALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQV 78 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~-~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v 78 (286)
|||||++ +|..+. .+|+|.+ |.+ -.+|||+|++ .+++.+||.|++.++... ........+..+.+
T Consensus 358 KSTLlk~l~G~~~p-~~G~i~~-~~~----------~~i~y~~q~~~~l~~~~tv~e~l~~~~~~-~~~~~~~~~~~~~l 424 (635)
T PRK11147 358 KTTLLKLMLGQLQA-DSGRIHC-GTK----------LEVAYFDQHRAELDPEKTVMDNLAEGKQE-VMVNGRPRHVLGYL 424 (635)
T ss_pred HHHHHHHHhCCCCC-CCcEEEE-CCC----------cEEEEEeCcccccCCCCCHHHHHHhhccc-ccccchHHHHHHHH
Confidence 8999999 997543 6899998 532 1499999986 588999999999986531 10010122222222
Q ss_pred h---h-----h-hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcCCCHHH
Q psy8953 79 S---L-----E-LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVATIHTPSALL 130 (286)
Q Consensus 79 ~---l-----~-~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~~~~~~ 130 (286)
. + . ...++|||||| ||++||+.++..+.++|+++ +.|||+++|+.+ .+
T Consensus 425 ~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vSHd~~-~~ 500 (635)
T PRK11147 425 QDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY---QGTVLLVSHDRQ-FV 500 (635)
T ss_pred HhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC---CCeEEEEECCHH-HH
Confidence 2 2 1 34679999999 99999999999999999876 349999999986 46
Q ss_pred HHHhhhHhhhc-CCeee-cccChhcH
Q psy8953 131 FEKFDSLYALA-KGHCI-YRGSISRL 154 (286)
Q Consensus 131 ~~~~d~v~~l~-~G~i~-~~g~~~~~ 154 (286)
...+|++++|+ +|++. |.|+-.+.
T Consensus 501 ~~~~d~i~~l~~~g~i~~~~g~y~~y 526 (635)
T PRK11147 501 DNTVTECWIFEGNGKIGRYVGGYHDA 526 (635)
T ss_pred HHhcCEEEEEeCCCeEEEccCCHHHH
Confidence 68899999997 78876 45554444
No 367
>PLN03073 ABC transporter F family; Provisional
Probab=99.49 E-value=1e-13 Score=133.89 Aligned_cols=137 Identities=16% Similarity=0.217 Sum_probs=97.5
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
|||||++ +|..+. .+|+|.+++. ..+||++|++. ..+++.++..+......+ ..+.+++++.+.
T Consensus 548 KSTLLk~L~Gll~p-~~G~I~~~~~-----------~~igyv~Q~~~--~~l~~~~~~~~~~~~~~~-~~~~~~i~~~L~ 612 (718)
T PLN03073 548 KSTILKLISGELQP-SSGTVFRSAK-----------VRMAVFSQHHV--DGLDLSSNPLLYMMRCFP-GVPEQKLRAHLG 612 (718)
T ss_pred HHHHHHHHhCCCCC-CCceEEECCc-----------eeEEEEecccc--ccCCcchhHHHHHHHhcC-CCCHHHHHHHHH
Confidence 8999999 997543 6899998752 35999999863 344555553332211111 223444443333
Q ss_pred ---hh------hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcCCCHHHH
Q psy8953 80 ---LE------LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVATIHTPSALLF 131 (286)
Q Consensus 80 ---l~------~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~~~~~~~ 131 (286)
+. ....+|||||| ||++||+.++..+.+.|.+. .| |||+++|+++ .+.
T Consensus 613 ~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~g-tvIivSHd~~-~i~ 688 (718)
T PLN03073 613 SFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF--QG-GVLMVSHDEH-LIS 688 (718)
T ss_pred HCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-EEEEEECCHH-HHH
Confidence 21 34568999999 99999999999988877765 34 9999999986 466
Q ss_pred HHhhhHhhhcCCeee-cccChhcHHH
Q psy8953 132 EKFDSLYALAKGHCI-YRGSISRLVP 156 (286)
Q Consensus 132 ~~~d~v~~l~~G~i~-~~g~~~~~~~ 156 (286)
..+|++++|++|+++ +.|+..+...
T Consensus 689 ~~~drv~~l~~G~i~~~~g~~~~~~~ 714 (718)
T PLN03073 689 GSVDELWVVSEGKVTPFHGTFHDYKK 714 (718)
T ss_pred HhCCEEEEEECCEEEEeCCCHHHHHH
Confidence 789999999999998 7888766543
No 368
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=1.5e-14 Score=126.89 Aligned_cols=146 Identities=18% Similarity=0.247 Sum_probs=113.7
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
|||++.+ -.+ ....+|.|.+||+++..-.....++.+|.||||-. +.+.|...++.|+=. ..+.+|+..-.+
T Consensus 302 KsTI~rllfRF-yD~~sG~I~id~qdir~vtq~slR~aIg~VPQDtv-LFNDti~yni~ygr~-----~at~eev~aaa~ 374 (497)
T COG5265 302 KSTILRLLFRF-YDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTV-LFNDTIAYNIKYGRP-----DATAEEVGAAAE 374 (497)
T ss_pred HHHHHHHHHHH-hCCcCceEEEcchhHHHhHHHHHHHHhCcCcccce-ehhhhHHHHHhccCc-----cccHHHHHHHHH
Confidence 6888888 443 33489999999999976555677899999999754 457788888888753 234566554433
Q ss_pred --------------hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEE
Q psy8953 80 --------------LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVA 121 (286)
Q Consensus 80 --------------l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~ 121 (286)
++ .--.+|||||| .||.||..+-+++...|++++. |+|-++
T Consensus 375 ~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~-~rttlv 453 (497)
T COG5265 375 AAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSA-GRTTLV 453 (497)
T ss_pred HhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhC-CCeEEE
Confidence 11 11236799999 7899999999999999999985 788899
Q ss_pred EEcCCCHHHHHHhhhHhhhcCCeeecccChhcHHH
Q psy8953 122 TIHTPSALLFEKFDSLYALAKGHCIYRGSISRLVP 156 (286)
Q Consensus 122 ~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 156 (286)
+.|+++. +.+ +|.++||++|+|+..|+.++++.
T Consensus 454 iahrlst-i~~-adeiivl~~g~i~erg~h~~ll~ 486 (497)
T COG5265 454 IAHRLST-IID-ADEIIVLDNGRIVERGTHEELLA 486 (497)
T ss_pred Eeehhhh-ccC-CceEEEeeCCEEEecCcHHHHHH
Confidence 9999985 434 99999999999999999888764
No 369
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.47 E-value=2.5e-13 Score=111.85 Aligned_cols=142 Identities=20% Similarity=0.265 Sum_probs=112.3
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
|||||++ ||..+. .+|+|.++|+-... +.-.+ .+.|.+|.+|++.|-..+ .+++++|++++++
T Consensus 66 KSTLlkliaGi~~P-t~G~v~v~G~v~~l-----i~lg~-------Gf~pelTGreNi~l~~~~---~G~~~~ei~~~~~ 129 (249)
T COG1134 66 KSTLLKLIAGIYKP-TSGKVKVTGKVAPL-----IELGA-------GFDPELTGRENIYLRGLI---LGLTRKEIDEKVD 129 (249)
T ss_pred HHHHHHHHhCccCC-CCceEEEcceEehh-----hhccc-------CCCcccchHHHHHHHHHH---hCccHHHHHHHHH
Confidence 8999999 995443 79999999975432 11112 245889999999999985 4567899988877
Q ss_pred -------hh-h----hhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcCCCH
Q psy8953 80 -------LE-L----WNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVATIHTPSA 128 (286)
Q Consensus 80 -------l~-~----~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~~~~ 128 (286)
|. . ..+.|-|.+- -.+-.|+.=++.-.+.+.++.+++.|||++.|+..
T Consensus 130 eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~- 208 (249)
T COG1134 130 EIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLG- 208 (249)
T ss_pred HHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEECCHH-
Confidence 32 2 2345566544 44678999999999999999888899999999986
Q ss_pred HHHHHhhhHhhhcCCeeecccChhcHHHHHH
Q psy8953 129 LLFEKFDSLYALAKGHCIYRGSISRLVPHLA 159 (286)
Q Consensus 129 ~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~ 159 (286)
.+.++||++++|++|++.+.|++++++++..
T Consensus 209 ~I~~~Cd~~i~l~~G~i~~~G~~~~vi~~Y~ 239 (249)
T COG1134 209 AIKQYCDRAIWLEHGQIRMEGSPEEVIPAYE 239 (249)
T ss_pred HHHHhcCeeEEEeCCEEEEcCCHHHHHHHHH
Confidence 5789999999999999999999999987544
No 370
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.47 E-value=1.6e-13 Score=124.88 Aligned_cols=149 Identities=16% Similarity=0.249 Sum_probs=112.1
Q ss_pred chhhhh-cCCCCCCceeEEEECCeecCch-hhhcccceeeEEecCc---ccCCCCCHHHHHHHHHhcCCC-C-CCCHHHH
Q psy8953 2 SIELNV-QSIRLTGSSGKILVNGQERKSA-CIEQFLKLSCYIQQDD---ALRPKLTVTEAMMIASHLKLG-F-KVSTQEK 74 (286)
Q Consensus 2 stll~~-~g~~~~~~~G~i~~~g~~~~~~-~~~~~~~~~g~v~Q~~---~~~~~~tV~e~l~f~~~~~~~-~-~~~~~~~ 74 (286)
|-|++. .|..+. .+|+|++||+++.-. +....+.-++||+-|- .++..++|.+|+.++..-+.. . -+++...
T Consensus 299 TEl~~~lfG~~~~-~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e 377 (500)
T COG1129 299 TELARALFGARPA-SSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKE 377 (500)
T ss_pred HHHHHHHhCCCcC-CCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHH
Confidence 345566 664443 699999999998653 3345678999999984 489999999999999322211 1 1333333
Q ss_pred HHHHh-----hh--------hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEE
Q psy8953 75 KDQVS-----LE--------LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVAT 122 (286)
Q Consensus 75 ~~~v~-----l~--------~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~ 122 (286)
++.++ |. ...++|||-.| ||.|.|.-+..++++++++|+++|++||++
T Consensus 378 ~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~i 457 (500)
T COG1129 378 RALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMI 457 (500)
T ss_pred HHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEE
Confidence 33332 22 33468888777 999999999999999999999999999999
Q ss_pred EcCCCHHHHHHhhhHhhhcCCeeecccChh
Q psy8953 123 IHTPSALLFEKFDSLYALAKGHCIYRGSIS 152 (286)
Q Consensus 123 ~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~ 152 (286)
.-..+ ++...||||+||.+|+++..-+.+
T Consensus 458 SSElp-Ell~~~DRIlVm~~Gri~~e~~~~ 486 (500)
T COG1129 458 SSELP-ELLGLSDRILVMREGRIVGELDRE 486 (500)
T ss_pred eCChH-HHHhhCCEEEEEECCEEEEEeccc
Confidence 99986 467899999999999999754444
No 371
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.46 E-value=5.9e-14 Score=116.18 Aligned_cols=41 Identities=46% Similarity=0.744 Sum_probs=39.3
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
..+|+|+||+|.+|||++|+||+|||||||+|+|+||.++.
T Consensus 16 ~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~ 56 (248)
T COG1116 16 VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPT 56 (248)
T ss_pred eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 56999999999999999999999999999999999999985
No 372
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.44 E-value=9.1e-14 Score=108.61 Aligned_cols=95 Identities=22% Similarity=0.199 Sum_probs=73.4
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
||||+++ +|..+. .+|+|+++|+ +.++||+| + |..++ +|+.
T Consensus 39 KStLl~~l~G~~~~-~~G~i~~~~~-----------~~i~~~~~---------------------l----S~G~~-~rv~ 80 (144)
T cd03221 39 KSTLLKLIAGELEP-DEGIVTWGST-----------VKIGYFEQ---------------------L----SGGEK-MRLA 80 (144)
T ss_pred HHHHHHHHcCCCCC-CceEEEECCe-----------EEEEEEcc---------------------C----CHHHH-HHHH
Confidence 8999999 997554 6999999984 46999999 1 22222 2222
Q ss_pred hh----------hhhcccCCccccCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHhhhHhhhcCCe
Q psy8953 80 LE----------LWNNFCKKKKKKKRGLDSSSCSQCVSLLANLAKQGRTVVATIHTPSALLFEKFDSLYALAKGH 144 (286)
Q Consensus 80 l~----------~~~~~~gG~kqptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~~~~~~~~~~d~v~~l~~G~ 144 (286)
+. ..|. |+++||+.++..+.+.|+++ +.||++++|+++ .+..++|++++|++|+
T Consensus 81 laral~~~p~illlDE-------P~~~LD~~~~~~l~~~l~~~---~~til~~th~~~-~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 81 LAKLLLENPNLLLLDE-------PTNHLDLESIEALEEALKEY---PGTVILVSHDRY-FLDQVATKIIELEDGK 144 (144)
T ss_pred HHHHHhcCCCEEEEeC-------CccCCCHHHHHHHHHHHHHc---CCEEEEEECCHH-HHHHhCCEEEEEeCCC
Confidence 10 2233 99999999999999999987 469999999986 4667899999999885
No 373
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.44 E-value=1e-13 Score=114.18 Aligned_cols=41 Identities=41% Similarity=0.511 Sum_probs=39.3
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
..+|+||||++++||.++|+|+||||||||+|+|+|.++|+
T Consensus 40 ~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt 80 (249)
T COG1134 40 FWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPT 80 (249)
T ss_pred EEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCC
Confidence 45899999999999999999999999999999999999996
No 374
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.43 E-value=1.4e-13 Score=112.32 Aligned_cols=41 Identities=39% Similarity=0.661 Sum_probs=39.1
Q ss_pred ccccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCC
Q psy8953 241 NKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYL 281 (286)
Q Consensus 241 ~~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~ 281 (286)
...+|++|||++++||+++|+|+||||||||+|+|+|+.++
T Consensus 15 ~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~ 55 (237)
T COG0410 15 KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRP 55 (237)
T ss_pred ceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 45699999999999999999999999999999999999986
No 375
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.42 E-value=1e-12 Score=117.81 Aligned_cols=151 Identities=17% Similarity=0.192 Sum_probs=118.8
Q ss_pred chhhhh-cCCCCCCceeEEEECCeec-Cchhhhcc-cceeeEEecCcc---cCCCCCHHHHHHHHHhcCCC----CCCCH
Q psy8953 2 SIELNV-QSIRLTGSSGKILVNGQER-KSACIEQF-LKLSCYIQQDDA---LRPKLTVTEAMMIASHLKLG----FKVST 71 (286)
Q Consensus 2 stll~~-~g~~~~~~~G~i~~~g~~~-~~~~~~~~-~~~~g~v~Q~~~---~~~~~tV~e~l~f~~~~~~~----~~~~~ 71 (286)
|-|+++ +|.++... |+|++||+++ ...++.++ +.-+||||.|-. +.+.+|+.|++.+...-+-| .-+..
T Consensus 298 ~eL~eaisGlr~~~~-G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~ 376 (501)
T COG3845 298 SELVEAISGLRKPAS-GRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDR 376 (501)
T ss_pred HHHHHHHhCCCccCC-ceEEECCEeccccCCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCH
Confidence 468889 99775433 9999999997 33233343 579999999973 68999999999998763211 12455
Q ss_pred HHHHHHHh------------hh-hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEE
Q psy8953 72 QEKKDQVS------------LE-LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTV 119 (286)
Q Consensus 72 ~~~~~~v~------------l~-~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~ti 119 (286)
.++++... .. ....+|||..| ||.|||..+++.+.+.|.++++.|..|
T Consensus 377 ~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AV 456 (501)
T COG3845 377 RAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAV 456 (501)
T ss_pred HHHHHHHHHHHHHcCccCCCCCcchhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEE
Confidence 66655443 11 34568899888 999999999999999999999999999
Q ss_pred EEEEcCCCHHHHHHhhhHhhhcCCeeecccChhcH
Q psy8953 120 VATIHTPSALLFEKFDSLYALAKGHCIYRGSISRL 154 (286)
Q Consensus 120 i~~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 154 (286)
+++.-.++ +++.++||+.||.+|+++...+++++
T Consensus 457 LLiS~dLD-Eil~lsDrIaVi~~Gri~~~~~~~~~ 490 (501)
T COG3845 457 LLISEDLD-EILELSDRIAVIYEGRIVGIVPPEEA 490 (501)
T ss_pred EEEehhHH-HHHHhhheeeeeeCCceecccccccC
Confidence 99999986 57799999999999999988877763
No 376
>KOG0054|consensus
Probab=99.42 E-value=2.2e-13 Score=136.51 Aligned_cols=132 Identities=21% Similarity=0.269 Sum_probs=104.9
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
||+||.. .|-.+. .+|+|.|+|- ++||+|.|-.+ +-||+|||.|+..+ +++.-++-++
T Consensus 560 KSSLL~AiLGEm~~-~sG~v~v~gs-------------iaYv~Q~pWI~-ngTvreNILFG~~~------d~~rY~~Vi~ 618 (1381)
T KOG0054|consen 560 KSSLLSAILGEMPK-LSGSVAVNGS-------------VAYVPQQPWIQ-NGTVRENILFGSPY------DEERYDKVIK 618 (1381)
T ss_pred HHHHHHHHhcCccc-ccceEEEcCe-------------EEEeccccHhh-CCcHHHhhhcCccc------cHHHHHHHHH
Confidence 8999999 884443 8999999983 89999999654 67999999999975 3444444444
Q ss_pred -------hh-h-----------hhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEE
Q psy8953 80 -------LE-L-----------WNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVA 121 (286)
Q Consensus 80 -------l~-~-----------~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~ 121 (286)
++ . --++|||||| |.|.+|++....+++-.=...-+++|+|+
T Consensus 619 aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~IL 698 (1381)
T KOG0054|consen 619 ACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVIL 698 (1381)
T ss_pred HccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEE
Confidence 22 1 1247899999 99999999999987655544345899999
Q ss_pred EEcCCCHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 122 TIHTPSALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 122 ~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
++|+.. ..+.+|.|++|++|+|...|+.+|+.
T Consensus 699 VTHql~--~L~~ad~Iivl~~G~I~~~Gty~el~ 730 (1381)
T KOG0054|consen 699 VTHQLQ--FLPHADQIIVLKDGKIVESGTYEELL 730 (1381)
T ss_pred EeCchh--hhhhCCEEEEecCCeEecccCHHHHH
Confidence 999975 34679999999999999999999876
No 377
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.42 E-value=1.4e-13 Score=113.27 Aligned_cols=43 Identities=42% Similarity=0.594 Sum_probs=40.5
Q ss_pred cccccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 240 LNKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 240 ~~~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
.++.+|+++||+|++||.|+|+|+||||||||+++++|-+.+.
T Consensus 42 ~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~ps 84 (257)
T COG1119 42 NGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPS 84 (257)
T ss_pred CCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCC
Confidence 3578999999999999999999999999999999999998875
No 378
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.40 E-value=2.9e-13 Score=108.03 Aligned_cols=41 Identities=41% Similarity=0.687 Sum_probs=38.8
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
+.+++++||+|++||+++|+|+||||||||+++|+|+++++
T Consensus 13 ~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~ 53 (163)
T cd03216 13 VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPD 53 (163)
T ss_pred eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 46899999999999999999999999999999999999874
No 379
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.39 E-value=3.7e-13 Score=110.08 Aligned_cols=42 Identities=45% Similarity=0.695 Sum_probs=39.6
Q ss_pred ccccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 241 NKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 241 ~~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
++.+|++|||+|++||++||+|++|||||||+|+|+||..++
T Consensus 16 ~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t 57 (258)
T COG3638 16 GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPT 57 (258)
T ss_pred CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCC
Confidence 467999999999999999999999999999999999998875
No 380
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.39 E-value=3.7e-13 Score=112.57 Aligned_cols=40 Identities=53% Similarity=0.826 Sum_probs=38.2
Q ss_pred ccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 243 EILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 243 ~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
.+++++||+|++||+++|+|+||||||||+++|+|+++++
T Consensus 18 ~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~ 57 (218)
T cd03255 18 QALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPT 57 (218)
T ss_pred eEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCC
Confidence 4899999999999999999999999999999999999875
No 381
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.38 E-value=3.8e-13 Score=117.14 Aligned_cols=41 Identities=49% Similarity=0.781 Sum_probs=39.4
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
+.+|++|||+|++||++|++||||||||||+|+|+|+++++
T Consensus 18 ~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~ 58 (293)
T COG1131 18 KTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPT 58 (293)
T ss_pred CEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCC
Confidence 67999999999999999999999999999999999999984
No 382
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.37 E-value=4.9e-13 Score=111.73 Aligned_cols=41 Identities=29% Similarity=0.534 Sum_probs=38.4
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
+.+++++||+|++||+++|+|+||||||||+++|+|+++++
T Consensus 16 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~ 56 (216)
T TIGR00960 16 QPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPT 56 (216)
T ss_pred eeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 34899999999999999999999999999999999999874
No 383
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.37 E-value=5.9e-13 Score=104.02 Aligned_cols=41 Identities=39% Similarity=0.553 Sum_probs=38.5
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
..+++++||++++||+++|+|+||||||||+++|+|++++.
T Consensus 13 ~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~ 53 (144)
T cd03221 13 KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPD 53 (144)
T ss_pred ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC
Confidence 35899999999999999999999999999999999999874
No 384
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.37 E-value=4.9e-13 Score=110.40 Aligned_cols=41 Identities=51% Similarity=0.783 Sum_probs=39.1
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
..+|+++||+|++||++||+||+||||||||++|.||.+|+
T Consensus 18 ~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt 58 (226)
T COG1136 18 VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPT 58 (226)
T ss_pred eEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC
Confidence 45899999999999999999999999999999999999985
No 385
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.37 E-value=5.2e-13 Score=112.27 Aligned_cols=41 Identities=49% Similarity=0.703 Sum_probs=38.7
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
+.+++++||+|++||+++|+|+||||||||+++|+|++++.
T Consensus 20 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~ 60 (225)
T PRK10247 20 AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPT 60 (225)
T ss_pred ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC
Confidence 46899999999999999999999999999999999998764
No 386
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.37 E-value=5.5e-13 Score=112.92 Aligned_cols=42 Identities=43% Similarity=0.693 Sum_probs=39.3
Q ss_pred ccccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 241 NKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 241 ~~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
.+.+|+++||+|.+||+++|+|+||||||||+++|+|+++++
T Consensus 33 ~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~ 74 (236)
T cd03267 33 EVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPT 74 (236)
T ss_pred CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC
Confidence 356999999999999999999999999999999999999874
No 387
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.37 E-value=5.4e-13 Score=118.54 Aligned_cols=42 Identities=33% Similarity=0.665 Sum_probs=39.6
Q ss_pred ccccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 241 NKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 241 ~~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
++.+|+++||+|.+||+++|+||||||||||+++|+|+++++
T Consensus 53 ~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~ 94 (340)
T PRK13536 53 DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPD 94 (340)
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC
Confidence 356999999999999999999999999999999999999885
No 388
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.36 E-value=6.6e-13 Score=113.40 Aligned_cols=41 Identities=39% Similarity=0.753 Sum_probs=38.7
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
+.+++++||+|.+||+++|+|+||||||||+++|+|+++++
T Consensus 17 ~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~ 57 (251)
T PRK09544 17 RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPD 57 (251)
T ss_pred ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 45899999999999999999999999999999999998874
No 389
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.36 E-value=1.3e-13 Score=113.46 Aligned_cols=42 Identities=31% Similarity=0.652 Sum_probs=39.8
Q ss_pred ccccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 241 NKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 241 ~~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
.-.+++||||++++||+++|+||||||||||+++|+|+++|+
T Consensus 16 Gl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~ 57 (250)
T COG0411 16 GLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPS 57 (250)
T ss_pred CEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCC
Confidence 356899999999999999999999999999999999999986
No 390
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.36 E-value=6.7e-13 Score=111.23 Aligned_cols=40 Identities=48% Similarity=0.720 Sum_probs=38.1
Q ss_pred ccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 243 EILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 243 ~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
.+++++||+|++||+++|+|+||||||||+++|+|+++++
T Consensus 18 ~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~ 57 (220)
T cd03293 18 TALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPT 57 (220)
T ss_pred EEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 5899999999999999999999999999999999999874
No 391
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.36 E-value=7e-13 Score=113.54 Aligned_cols=41 Identities=44% Similarity=0.688 Sum_probs=38.8
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
+.+++++||+|.+||+++|+|+||||||||+++|+|+++++
T Consensus 25 ~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~ 65 (257)
T PRK11247 25 RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPS 65 (257)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 45899999999999999999999999999999999999875
No 392
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.36 E-value=6.3e-13 Score=116.72 Aligned_cols=41 Identities=39% Similarity=0.660 Sum_probs=39.1
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
..+|+++||+|++||+++|+||||||||||+|+|+|+++++
T Consensus 20 ~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~ 60 (306)
T PRK13537 20 KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPD 60 (306)
T ss_pred eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 56999999999999999999999999999999999999875
No 393
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.36 E-value=7.6e-13 Score=111.17 Aligned_cols=42 Identities=38% Similarity=0.501 Sum_probs=39.4
Q ss_pred ccccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 241 NKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 241 ~~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
.+.+++++||+|++||+++|+|+||||||||+++|+|+++++
T Consensus 34 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~ 75 (224)
T cd03220 34 EFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPD 75 (224)
T ss_pred CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 456999999999999999999999999999999999999874
No 394
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.36 E-value=7.4e-13 Score=115.33 Aligned_cols=41 Identities=34% Similarity=0.595 Sum_probs=38.8
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
+.+|+++||+|++||++||+|+||||||||+++|+|+++++
T Consensus 20 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~ 60 (287)
T PRK13637 20 KKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPT 60 (287)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC
Confidence 35899999999999999999999999999999999999875
No 395
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.36 E-value=7.7e-13 Score=111.85 Aligned_cols=41 Identities=44% Similarity=0.730 Sum_probs=38.5
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
+.+|+++||+|++||+++|+|+||||||||+++|+|+++++
T Consensus 22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~ 62 (233)
T PRK11629 22 TDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPT 62 (233)
T ss_pred eeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 35899999999999999999999999999999999999864
No 396
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.35 E-value=7.9e-13 Score=114.16 Aligned_cols=41 Identities=44% Similarity=0.681 Sum_probs=38.8
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
+.+++++||+|++||+++|+|+||||||||+++|+|++++.
T Consensus 20 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~ 60 (269)
T PRK11831 20 RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPD 60 (269)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 56899999999999999999999999999999999999874
No 397
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.35 E-value=8.3e-13 Score=105.75 Aligned_cols=41 Identities=44% Similarity=0.611 Sum_probs=38.7
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
+.+++++||+|.+||+++|+|+||||||||+++|+|+++++
T Consensus 14 ~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~ 54 (166)
T cd03223 14 RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWG 54 (166)
T ss_pred CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 45899999999999999999999999999999999999875
No 398
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.35 E-value=8.1e-13 Score=115.05 Aligned_cols=41 Identities=34% Similarity=0.616 Sum_probs=38.8
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
+.+|+|+||+|++||+++|+|+||||||||+++|+|+++++
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~ 60 (286)
T PRK13646 20 HQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPT 60 (286)
T ss_pred cCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 35899999999999999999999999999999999999875
No 399
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.35 E-value=8.2e-13 Score=112.22 Aligned_cols=41 Identities=24% Similarity=0.622 Sum_probs=38.8
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
+.+++++||+|++||+++|+|+||||||||+++|+|+++++
T Consensus 16 ~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~ 56 (241)
T PRK10895 16 RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRD 56 (241)
T ss_pred EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 46899999999999999999999999999999999999874
No 400
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.35 E-value=7.9e-13 Score=116.08 Aligned_cols=41 Identities=32% Similarity=0.574 Sum_probs=38.9
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
+.+|+++||+|++||+++|+|+||||||||+++|+|+++++
T Consensus 17 ~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~ 57 (303)
T TIGR01288 17 KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPD 57 (303)
T ss_pred eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 45899999999999999999999999999999999999874
No 401
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.35 E-value=7.6e-13 Score=116.25 Aligned_cols=42 Identities=36% Similarity=0.665 Sum_probs=39.9
Q ss_pred ccccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 241 NKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 241 ~~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
+..+++|+||+|++||+++++||+|||||||||+|+|+..|+
T Consensus 17 ~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~ 58 (352)
T COG3842 17 DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPS 58 (352)
T ss_pred CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 466999999999999999999999999999999999999986
No 402
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.35 E-value=9.1e-13 Score=111.97 Aligned_cols=41 Identities=49% Similarity=0.751 Sum_probs=38.6
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
+.+++++||+|.+||+++|+|+||||||||+++|+|++++.
T Consensus 16 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~ 56 (241)
T PRK14250 16 KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPT 56 (241)
T ss_pred eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 45899999999999999999999999999999999999864
No 403
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.35 E-value=8.2e-13 Score=111.64 Aligned_cols=40 Identities=38% Similarity=0.556 Sum_probs=38.2
Q ss_pred ccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 243 EILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 243 ~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
.+++++||+|++||+++|+|+||||||||+++|+|+++++
T Consensus 19 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~ 58 (233)
T cd03258 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPT 58 (233)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 4899999999999999999999999999999999999875
No 404
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.35 E-value=1.1e-12 Score=105.65 Aligned_cols=40 Identities=45% Similarity=0.636 Sum_probs=38.2
Q ss_pred ccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 243 EILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 243 ~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
.+++++||+|++||+++|+|+||||||||+++|+|++++.
T Consensus 16 ~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~ 55 (171)
T cd03228 16 PVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPT 55 (171)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC
Confidence 5899999999999999999999999999999999999874
No 405
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.35 E-value=8.2e-13 Score=115.44 Aligned_cols=41 Identities=39% Similarity=0.718 Sum_probs=38.6
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
..+++++|++|..||+++|+||||||||||||+||||.+++
T Consensus 16 ~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~ 56 (338)
T COG3839 16 FEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPT 56 (338)
T ss_pred ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 33899999999999999999999999999999999999875
No 406
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.35 E-value=8.9e-13 Score=111.05 Aligned_cols=40 Identities=50% Similarity=0.677 Sum_probs=38.1
Q ss_pred ccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 243 EILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 243 ~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
.+++++||+|++||+++|+|+||||||||+++|+|+++++
T Consensus 24 ~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~ 63 (228)
T PRK10584 24 SILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGS 63 (228)
T ss_pred EEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC
Confidence 4899999999999999999999999999999999999874
No 407
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.34 E-value=1e-12 Score=109.68 Aligned_cols=41 Identities=34% Similarity=0.555 Sum_probs=38.8
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
+.+++++||+|++||+++|+|+||||||||+++|+|+++++
T Consensus 24 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~ 64 (214)
T PRK13543 24 EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVE 64 (214)
T ss_pred ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCC
Confidence 45899999999999999999999999999999999999875
No 408
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.34 E-value=1e-12 Score=114.46 Aligned_cols=41 Identities=37% Similarity=0.521 Sum_probs=38.7
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
+.+++++||+|.+||+++|+|+||||||||+++|+|+++++
T Consensus 20 ~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~ 60 (287)
T PRK13641 20 KKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPS 60 (287)
T ss_pred ccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 35899999999999999999999999999999999999874
No 409
>KOG0054|consensus
Probab=99.34 E-value=1.6e-12 Score=130.42 Aligned_cols=145 Identities=18% Similarity=0.182 Sum_probs=111.0
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
||||.+. =.+... .+|+|.|||.++++....++++.++.+||||.+|.. |||+||-=.. ..+.+|+=+-.+
T Consensus 1179 KSSL~~aLFRl~e~-~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsG-TvR~NLDPf~------e~sD~~IW~ALe 1250 (1381)
T KOG0054|consen 1179 KSSLILALFRLVEP-AEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSG-TVRFNLDPFD------EYSDDEIWEALE 1250 (1381)
T ss_pred HHHHHHHHHHhcCc-cCCeEEEcCeecccccHHHHHhcCeeeCCCCceecC-ccccccCccc------ccCHHHHHHHHH
Confidence 7888888 655444 899999999999998899999999999999998754 3444332111 234444433222
Q ss_pred --------------hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEE
Q psy8953 80 --------------LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVA 121 (286)
Q Consensus 80 --------------l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~ 121 (286)
|+ .-..+|=|||| .|++.|+++-.-+-++|++--+ +.||+.
T Consensus 1251 ~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~-dcTVlt 1329 (1381)
T KOG0054|consen 1251 RCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFK-DCTVLT 1329 (1381)
T ss_pred HhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhc-CCeEEE
Confidence 22 12345678999 9999999999998888886544 689999
Q ss_pred EEcCCCHHHHHHhhhHhhhcCCeeecccChhcHHH
Q psy8953 122 TIHTPSALLFEKFDSLYALAKGHCIYRGSISRLVP 156 (286)
Q Consensus 122 ~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 156 (286)
+.||... +.+ +|||+||++|+++..|+|.++..
T Consensus 1330 IAHRl~T-Vmd-~DrVlVld~G~v~EfdsP~~Ll~ 1362 (1381)
T KOG0054|consen 1330 IAHRLNT-VMD-SDRVLVLDAGRVVEFDSPAELLS 1362 (1381)
T ss_pred Eeeccch-hhh-cCeEEEeeCCeEeecCChHHHHh
Confidence 9999986 445 99999999999999999998864
No 410
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.34 E-value=1e-12 Score=110.13 Aligned_cols=41 Identities=44% Similarity=0.730 Sum_probs=38.5
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
+.+++++||+|++||+++|+|+||||||||+++|+|++++.
T Consensus 18 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~ 58 (221)
T TIGR02211 18 TRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPT 58 (221)
T ss_pred eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 35899999999999999999999999999999999998864
No 411
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.34 E-value=8.4e-13 Score=106.30 Aligned_cols=114 Identities=20% Similarity=0.211 Sum_probs=80.6
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
|||||++ .+ .+|+|.++|..... .++.++|++| .| +-.++++... .
T Consensus 34 KSTLl~~il~-----~~G~v~~~~~~~~~-----~~~~~~~~~q----------~~---~l~~~~L~~~----------~ 80 (176)
T cd03238 34 KSTLVNEGLY-----ASGKARLISFLPKF-----SRNKLIFIDQ----------LQ---FLIDVGLGYL----------T 80 (176)
T ss_pred HHHHHHHHhh-----cCCcEEECCccccc-----ccccEEEEhH----------HH---HHHHcCCCcc----------c
Confidence 8999999 75 47899999874221 1345789988 11 1122222100 0
Q ss_pred hh-hhhcccCCccc---------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHhhhH
Q psy8953 80 LE-LWNNFCKKKKK---------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVATIHTPSALLFEKFDSL 137 (286)
Q Consensus 80 l~-~~~~~~gG~kq---------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~~~~~~~~~~d~v 137 (286)
+. ....+|||||| ||++||+.++..+.+.|+++++.|.|||+++|+++. + ..+|++
T Consensus 81 ~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~-~-~~~d~i 158 (176)
T cd03238 81 LGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDV-L-SSADWI 158 (176)
T ss_pred cCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-H-HhCCEE
Confidence 11 23445566665 999999999999999999998789999999999864 4 679999
Q ss_pred hhhcCCeeeccc
Q psy8953 138 YALAKGHCIYRG 149 (286)
Q Consensus 138 ~~l~~G~i~~~g 149 (286)
++|++|+..+.|
T Consensus 159 ~~l~~g~~~~~~ 170 (176)
T cd03238 159 IDFGPGSGKSGG 170 (176)
T ss_pred EEECCCCCCCCc
Confidence 999877665544
No 412
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.34 E-value=1.1e-12 Score=113.17 Aligned_cols=42 Identities=33% Similarity=0.457 Sum_probs=39.2
Q ss_pred ccccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 241 NKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 241 ~~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
...+++++||+|.+||+++|+|+||||||||+++|+|++++.
T Consensus 36 ~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~ 77 (269)
T cd03294 36 QTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPT 77 (269)
T ss_pred CceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 356899999999999999999999999999999999999874
No 413
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.34 E-value=1.1e-12 Score=109.81 Aligned_cols=40 Identities=43% Similarity=0.736 Sum_probs=38.1
Q ss_pred ccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 243 EILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 243 ~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
.+++++||+|++||+++|+|+||||||||+++|+|+++++
T Consensus 19 ~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~ 58 (218)
T cd03266 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPD 58 (218)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC
Confidence 4899999999999999999999999999999999999874
No 414
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.34 E-value=1e-12 Score=112.82 Aligned_cols=40 Identities=30% Similarity=0.491 Sum_probs=38.1
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYL 281 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~ 281 (286)
+.+|+++||+|++||+++|+|+||||||||+++|+|++++
T Consensus 17 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~ 56 (258)
T PRK14241 17 FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEV 56 (258)
T ss_pred EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCc
Confidence 4589999999999999999999999999999999999975
No 415
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.34 E-value=9.8e-13 Score=110.77 Aligned_cols=40 Identities=35% Similarity=0.496 Sum_probs=38.0
Q ss_pred ccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 243 EILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 243 ~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
.+++++||+|++||+++|+|+||||||||+++|+|+++++
T Consensus 19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~ 58 (228)
T cd03257 19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPT 58 (228)
T ss_pred eeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 4899999999999999999999999999999999999874
No 416
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.34 E-value=1e-12 Score=112.20 Aligned_cols=41 Identities=46% Similarity=0.743 Sum_probs=38.5
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
+.+++++||+|.+||+++|+|+||||||||+++|+|++++.
T Consensus 16 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~ 56 (250)
T PRK11264 16 QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPE 56 (250)
T ss_pred eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 45899999999999999999999999999999999998764
No 417
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.34 E-value=1.1e-12 Score=111.13 Aligned_cols=41 Identities=34% Similarity=0.578 Sum_probs=38.8
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
+.+++++||+|++||+++|+|+||||||||+++|+|+++++
T Consensus 18 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~ 58 (237)
T PRK11614 18 IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRAT 58 (237)
T ss_pred ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC
Confidence 45899999999999999999999999999999999999874
No 418
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.34 E-value=1.2e-12 Score=112.28 Aligned_cols=41 Identities=32% Similarity=0.465 Sum_probs=38.8
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
+.+++++||+|++||+++|+|+||||||||+++|+|+++++
T Consensus 19 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~ 59 (258)
T PRK11701 19 RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPD 59 (258)
T ss_pred ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 45899999999999999999999999999999999999874
No 419
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.33 E-value=1.1e-12 Score=113.10 Aligned_cols=41 Identities=39% Similarity=0.637 Sum_probs=38.8
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
+.+++++||+|++||+++|+|+||||||||+++|+|+++++
T Consensus 24 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~ 64 (265)
T PRK10575 24 RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPS 64 (265)
T ss_pred EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC
Confidence 46899999999999999999999999999999999999874
No 420
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.33 E-value=1.3e-12 Score=114.60 Aligned_cols=40 Identities=33% Similarity=0.590 Sum_probs=38.3
Q ss_pred ccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 243 EILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 243 ~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
.+|+++||+|.+||++||+|+||||||||+++|+|+++++
T Consensus 21 ~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~ 60 (305)
T PRK13651 21 KALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPD 60 (305)
T ss_pred cceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC
Confidence 5899999999999999999999999999999999999874
No 421
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.33 E-value=1.3e-12 Score=113.89 Aligned_cols=41 Identities=37% Similarity=0.549 Sum_probs=38.7
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
..+|+++||+|++||+++|+|+||||||||+++|+|+++++
T Consensus 20 ~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~ 60 (290)
T PRK13634 20 RRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPT 60 (290)
T ss_pred ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC
Confidence 35899999999999999999999999999999999999875
No 422
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=9.5e-13 Score=107.28 Aligned_cols=39 Identities=49% Similarity=0.754 Sum_probs=36.9
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTY 280 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~ 280 (286)
+++|+++||+|.+||+.||+||||||||||++.|+|.-+
T Consensus 17 keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~ 55 (251)
T COG0396 17 KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPK 55 (251)
T ss_pred hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 479999999999999999999999999999999999764
No 423
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.33 E-value=1.3e-12 Score=111.86 Aligned_cols=41 Identities=39% Similarity=0.631 Sum_probs=38.8
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
+.+++++||+|.+||+++|+|+||||||||+++|+|+++++
T Consensus 17 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~ 57 (253)
T PRK14267 17 NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELN 57 (253)
T ss_pred eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcc
Confidence 45899999999999999999999999999999999999874
No 424
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.33 E-value=1.3e-12 Score=111.88 Aligned_cols=41 Identities=37% Similarity=0.530 Sum_probs=38.7
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
+.+++++||+|++||+++|+|+||||||||+++|+|+++++
T Consensus 20 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~ 60 (254)
T PRK14273 20 FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLV 60 (254)
T ss_pred ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCC
Confidence 45899999999999999999999999999999999999874
No 425
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.33 E-value=1.4e-12 Score=109.65 Aligned_cols=40 Identities=43% Similarity=0.555 Sum_probs=38.2
Q ss_pred ccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 243 EILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 243 ~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
.+++++||+|.+||+++|+|+||||||||+++|+|++++.
T Consensus 22 ~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~ 61 (224)
T TIGR02324 22 PVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPD 61 (224)
T ss_pred EEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 5899999999999999999999999999999999999874
No 426
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.33 E-value=1.5e-12 Score=112.66 Aligned_cols=41 Identities=34% Similarity=0.531 Sum_probs=38.7
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
+.+++++||+|.+||+++|+|+||||||||+++|+|+++++
T Consensus 20 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~ 60 (272)
T PRK15056 20 HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLA 60 (272)
T ss_pred cEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 45899999999999999999999999999999999999874
No 427
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.32 E-value=1.5e-12 Score=112.63 Aligned_cols=41 Identities=44% Similarity=0.643 Sum_probs=38.8
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
..+++++||+|.+||+++|+|+||||||||+++|+|+++++
T Consensus 18 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~ 58 (274)
T PRK13647 18 TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQ 58 (274)
T ss_pred CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC
Confidence 45899999999999999999999999999999999999874
No 428
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.32 E-value=1.5e-12 Score=113.51 Aligned_cols=40 Identities=45% Similarity=0.604 Sum_probs=38.4
Q ss_pred ccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 243 EILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 243 ~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
.+|+++||+|.+||+++|+|+||||||||+++|+|+++++
T Consensus 20 ~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~ 59 (288)
T PRK13643 20 RALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPT 59 (288)
T ss_pred cceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCC
Confidence 5899999999999999999999999999999999999875
No 429
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.32 E-value=1.4e-12 Score=111.80 Aligned_cols=41 Identities=27% Similarity=0.532 Sum_probs=38.8
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
+.+++++||+|.+||+++|+|+||||||||+++|+|++++.
T Consensus 18 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~ 58 (255)
T PRK11300 18 LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPT 58 (255)
T ss_pred EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCC
Confidence 56899999999999999999999999999999999998874
No 430
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.32 E-value=1.5e-12 Score=111.50 Aligned_cols=41 Identities=37% Similarity=0.470 Sum_probs=38.6
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
..+++++||+|++||+++|+|+||||||||+++|+|+++++
T Consensus 16 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~ 56 (253)
T TIGR02323 16 GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPD 56 (253)
T ss_pred ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 45899999999999999999999999999999999999874
No 431
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.32 E-value=1.5e-12 Score=117.86 Aligned_cols=42 Identities=33% Similarity=0.654 Sum_probs=39.4
Q ss_pred ccccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 241 NKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 241 ~~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
++.+|+++||+|++||+++|+||||||||||+|+|+|++++.
T Consensus 15 ~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~ 56 (402)
T PRK09536 15 DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPT 56 (402)
T ss_pred CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCC
Confidence 356999999999999999999999999999999999999874
No 432
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.32 E-value=1.6e-12 Score=112.84 Aligned_cols=40 Identities=33% Similarity=0.505 Sum_probs=38.3
Q ss_pred ccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 243 EILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 243 ~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
.+|+|+||+|++||+++|+|+||||||||+++|+|+++++
T Consensus 21 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~ 60 (279)
T PRK13650 21 YTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAE 60 (279)
T ss_pred eeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 4899999999999999999999999999999999999875
No 433
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.32 E-value=9.1e-13 Score=112.43 Aligned_cols=110 Identities=19% Similarity=0.205 Sum_probs=84.5
Q ss_pred eeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHhhh------hhhcccCCccc-------------------
Q psy8953 38 SCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVSLE------LWNNFCKKKKK------------------- 92 (286)
Q Consensus 38 ~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~l~------~~~~~~gG~kq------------------- 92 (286)
+.|..++...+..+||.|++.|...+.- .....+..+++.|. ...++||||+|
T Consensus 118 ~~~~g~~i~~v~~ltv~e~~~~~~~~~~--~~~~~~~L~~vgL~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lll 195 (261)
T cd03271 118 VRYKGKSIADVLDMTVEEALEFFENIPK--IARKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYI 195 (261)
T ss_pred cCcCCCCHHHHhcCCHHHHHHHHHhhhh--HHHHHHHHHHcCCchhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEE
Confidence 4566666666789999999999887421 00011122233222 34678999988
Q ss_pred ---cCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHhhhHhhh------cCCeeecccCh
Q psy8953 93 ---KKRGLDSSSCSQCVSLLANLAKQGRTVVATIHTPSALLFEKFDSLYAL------AKGHCIYRGSI 151 (286)
Q Consensus 93 ---ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~~~~~~~~~~d~v~~l------~~G~i~~~g~~ 151 (286)
||++||+..+..+++.|+++.++|.|||+++|+++. + ..+|+++.| ++|++++.|++
T Consensus 196 LDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~-i-~~aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 196 LDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDV-I-KCADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-H-HhCCEEEEecCCcCCCCCEEEEeCCC
Confidence 999999999999999999999889999999999864 4 579999999 79999999874
No 434
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.32 E-value=1.5e-12 Score=112.37 Aligned_cols=40 Identities=35% Similarity=0.539 Sum_probs=38.1
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYL 281 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~ 281 (286)
+.+|+++||+|++||+++|+|+||||||||+++|+|++++
T Consensus 32 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~ 71 (267)
T PRK14235 32 KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDT 71 (267)
T ss_pred EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccc
Confidence 4689999999999999999999999999999999999875
No 435
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.32 E-value=1.9e-12 Score=104.35 Aligned_cols=41 Identities=39% Similarity=0.613 Sum_probs=38.5
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
..+++++||+|.+||+++|+|+||||||||+++|+|+++++
T Consensus 15 ~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~ 55 (173)
T cd03246 15 PPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPT 55 (173)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCC
Confidence 34899999999999999999999999999999999999875
No 436
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.32 E-value=1.7e-12 Score=111.46 Aligned_cols=40 Identities=38% Similarity=0.620 Sum_probs=38.1
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYL 281 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~ 281 (286)
+.+|+++||+|.+||+++|+|+||||||||+++|+|++++
T Consensus 25 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~ 64 (258)
T PRK14268 25 KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDL 64 (258)
T ss_pred eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCc
Confidence 4589999999999999999999999999999999999876
No 437
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.32 E-value=1.7e-12 Score=112.76 Aligned_cols=40 Identities=33% Similarity=0.581 Sum_probs=38.1
Q ss_pred ccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 243 EILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 243 ~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
.+|+++||+|++||+++|+|+||||||||+++|+|++++.
T Consensus 21 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~ 60 (280)
T PRK13649 21 RALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPT 60 (280)
T ss_pred ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 5899999999999999999999999999999999998874
No 438
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.32 E-value=1.7e-12 Score=111.98 Aligned_cols=40 Identities=43% Similarity=0.703 Sum_probs=38.2
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYL 281 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~ 281 (286)
+.+++++||+|.+||+++|+|+||||||||+++|+|++++
T Consensus 33 ~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~ 72 (267)
T PRK14237 33 KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDT 72 (267)
T ss_pred eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCc
Confidence 5689999999999999999999999999999999999975
No 439
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.32 E-value=1.8e-12 Score=112.44 Aligned_cols=41 Identities=37% Similarity=0.485 Sum_probs=38.7
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
..+|+++||+|++||+++|+|+||||||||+++|+|+++++
T Consensus 17 ~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~ 57 (277)
T PRK13652 17 KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPT 57 (277)
T ss_pred CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 34899999999999999999999999999999999999875
No 440
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.31 E-value=1.8e-12 Score=115.62 Aligned_cols=41 Identities=34% Similarity=0.482 Sum_probs=38.8
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
+.+|+++||+|++||+++|+|+||||||||+|+|+|+++++
T Consensus 18 ~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~ 58 (343)
T PRK11153 18 IHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPT 58 (343)
T ss_pred eEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC
Confidence 45899999999999999999999999999999999999875
No 441
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.31 E-value=1.8e-12 Score=109.92 Aligned_cols=41 Identities=34% Similarity=0.524 Sum_probs=38.3
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
+.+++++||+|++||+++|+|+||||||||+++|+|++++.
T Consensus 16 ~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~ 56 (238)
T cd03249 16 VPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPT 56 (238)
T ss_pred ccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCC
Confidence 34899999999999999999999999999999999998764
No 442
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.31 E-value=1.8e-12 Score=111.82 Aligned_cols=41 Identities=39% Similarity=0.553 Sum_probs=38.6
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
+.+++++||+|++||+++|+|+||||||||+++|+|++++.
T Consensus 26 ~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~ 66 (267)
T PRK15112 26 VEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPT 66 (267)
T ss_pred cceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCC
Confidence 35899999999999999999999999999999999999874
No 443
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.31 E-value=1.7e-12 Score=110.98 Aligned_cols=40 Identities=48% Similarity=0.749 Sum_probs=38.0
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYL 281 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~ 281 (286)
+.+++++||+|++||+++|+|+||||||||+++|+|++++
T Consensus 16 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~ 55 (250)
T PRK14247 16 VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIEL 55 (250)
T ss_pred eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCC
Confidence 4589999999999999999999999999999999999875
No 444
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.31 E-value=1.7e-12 Score=111.80 Aligned_cols=41 Identities=34% Similarity=0.543 Sum_probs=38.7
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
+.+++++||+|++||+++|+|+||||||||+++|+|+++++
T Consensus 24 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~ 64 (265)
T TIGR02769 24 APVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPA 64 (265)
T ss_pred eEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 45899999999999999999999999999999999999875
No 445
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.31 E-value=1.8e-12 Score=106.36 Aligned_cols=43 Identities=40% Similarity=0.643 Sum_probs=40.7
Q ss_pred cccccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 240 LNKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 240 ~~~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
.++.+++++||+|++||+++|+|++|||||||+|+|.||++|+
T Consensus 19 G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~ 61 (263)
T COG1127 19 GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPD 61 (263)
T ss_pred CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCC
Confidence 3577999999999999999999999999999999999999986
No 446
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.31 E-value=1.7e-12 Score=111.85 Aligned_cols=41 Identities=39% Similarity=0.600 Sum_probs=38.8
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
+.+|+++||+|.+||+++|+|+||||||||+++|+|+++++
T Consensus 20 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~ 60 (265)
T PRK10253 20 YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPA 60 (265)
T ss_pred EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC
Confidence 45899999999999999999999999999999999999874
No 447
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.31 E-value=1.8e-12 Score=110.83 Aligned_cols=41 Identities=29% Similarity=0.613 Sum_probs=38.8
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
+.+++++||+|++||+++|+|+||||||||+|+|+|+++++
T Consensus 17 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~ 57 (252)
T PRK14272 17 KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLT 57 (252)
T ss_pred EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC
Confidence 46899999999999999999999999999999999999865
No 448
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.31 E-value=1.9e-12 Score=111.37 Aligned_cols=41 Identities=41% Similarity=0.713 Sum_probs=39.0
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
+.+++++||+|.+||+++|+|+||||||||+++|+|+++++
T Consensus 17 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~ 57 (262)
T PRK09984 17 HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGD 57 (262)
T ss_pred eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCC
Confidence 56899999999999999999999999999999999999875
No 449
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.31 E-value=1.9e-12 Score=106.98 Aligned_cols=40 Identities=40% Similarity=0.532 Sum_probs=38.0
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYL 281 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~ 281 (286)
+.+++++||+|.+||+++|+|+||||||||+++|+|++++
T Consensus 20 ~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~ 59 (202)
T cd03233 20 IPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEG 59 (202)
T ss_pred ceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCC
Confidence 4589999999999999999999999999999999999984
No 450
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.31 E-value=2e-12 Score=112.30 Aligned_cols=41 Identities=37% Similarity=0.562 Sum_probs=38.7
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
+.+++++||+|++||+++|+|+||||||||+++|+|+++++
T Consensus 20 ~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~ 60 (282)
T PRK13640 20 KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPD 60 (282)
T ss_pred ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCC
Confidence 35899999999999999999999999999999999999875
No 451
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.31 E-value=1.9e-12 Score=110.62 Aligned_cols=39 Identities=38% Similarity=0.586 Sum_probs=37.2
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTY 280 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~ 280 (286)
+.+++|+||+|++||+++|+|+||||||||+++|+|+++
T Consensus 16 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 54 (250)
T PRK14240 16 FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMND 54 (250)
T ss_pred ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 458999999999999999999999999999999999976
No 452
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.31 E-value=2.3e-12 Score=106.04 Aligned_cols=41 Identities=41% Similarity=0.571 Sum_probs=39.4
Q ss_pred ccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCC
Q psy8953 243 EILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLNF 283 (286)
Q Consensus 243 ~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~~ 283 (286)
.+|++|||+|.+||.++|+|++|||||||+++|+||++++.
T Consensus 21 ~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~ 61 (252)
T COG1124 21 HALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSS 61 (252)
T ss_pred hhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCC
Confidence 48999999999999999999999999999999999999975
No 453
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.30 E-value=2.2e-12 Score=111.88 Aligned_cols=41 Identities=37% Similarity=0.503 Sum_probs=38.8
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
+.+++++||+|.+||+++|+|+||||||||+++|+|+++++
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~ 60 (279)
T PRK13635 20 TYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPE 60 (279)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC
Confidence 34899999999999999999999999999999999999875
No 454
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.30 E-value=2.2e-12 Score=111.99 Aligned_cols=41 Identities=32% Similarity=0.478 Sum_probs=38.9
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
+.+|+++||+|++||+++|+|+||||||||+++|+|+++++
T Consensus 23 ~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~ 63 (280)
T PRK13633 23 KLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPS 63 (280)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 45999999999999999999999999999999999999875
No 455
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.30 E-value=2.3e-12 Score=112.38 Aligned_cols=40 Identities=33% Similarity=0.594 Sum_probs=38.2
Q ss_pred ccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 243 EILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 243 ~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
.+++++||+|++||+++|+|+||||||||+++|+|+++++
T Consensus 25 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~ 64 (289)
T PRK13645 25 KALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISE 64 (289)
T ss_pred ceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 4899999999999999999999999999999999999874
No 456
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.30 E-value=2e-12 Score=111.00 Aligned_cols=39 Identities=36% Similarity=0.551 Sum_probs=37.4
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTY 280 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~ 280 (286)
+.+|+++||+|.+||+++|+|+||||||||+++|+|+++
T Consensus 25 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 63 (259)
T PRK14274 25 HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQ 63 (259)
T ss_pred eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 458999999999999999999999999999999999987
No 457
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.30 E-value=2e-12 Score=111.07 Aligned_cols=39 Identities=38% Similarity=0.536 Sum_probs=37.3
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTY 280 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~ 280 (286)
+.+|+++||+|++||+++|+|+||||||||+++|+|+++
T Consensus 26 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 64 (260)
T PRK10744 26 FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYE 64 (260)
T ss_pred eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 458999999999999999999999999999999999986
No 458
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.30 E-value=2.2e-12 Score=110.29 Aligned_cols=40 Identities=40% Similarity=0.614 Sum_probs=37.9
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYL 281 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~ 281 (286)
+.+|+++||+|++||+++|+|+||||||||+++|+|++++
T Consensus 17 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~ 56 (251)
T PRK14270 17 KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDL 56 (251)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCc
Confidence 4589999999999999999999999999999999999875
No 459
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.30 E-value=2.1e-12 Score=111.54 Aligned_cols=40 Identities=38% Similarity=0.606 Sum_probs=37.7
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYL 281 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~ 281 (286)
+.+|+++||+|++||+++|+|+||||||||+++|+|++++
T Consensus 26 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~ 65 (269)
T PRK14259 26 FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDL 65 (269)
T ss_pred EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccc
Confidence 4589999999999999999999999999999999999873
No 460
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.30 E-value=2.1e-12 Score=110.29 Aligned_cols=41 Identities=44% Similarity=0.592 Sum_probs=38.6
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
+.+++++||+|.+||+++|+|+||||||||+++|+|+++++
T Consensus 16 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~ 56 (249)
T PRK14253 16 NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLI 56 (249)
T ss_pred eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccc
Confidence 45899999999999999999999999999999999999864
No 461
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.30 E-value=2.6e-12 Score=106.42 Aligned_cols=40 Identities=43% Similarity=0.532 Sum_probs=38.0
Q ss_pred ccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 243 EILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 243 ~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
.+++++||+|++||+++|+|+||||||||+++|+|+++++
T Consensus 19 ~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~ 58 (204)
T cd03250 19 FTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKL 58 (204)
T ss_pred ceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCC
Confidence 3899999999999999999999999999999999999875
No 462
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.30 E-value=2.4e-12 Score=115.78 Aligned_cols=41 Identities=39% Similarity=0.665 Sum_probs=38.8
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
+.+|+++||+|++||+++|+|+||||||||+++|+|+++++
T Consensus 16 ~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~ 56 (369)
T PRK11000 16 VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDIT 56 (369)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC
Confidence 45899999999999999999999999999999999999874
No 463
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.30 E-value=2.6e-12 Score=110.18 Aligned_cols=41 Identities=39% Similarity=0.591 Sum_probs=38.8
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
+.+++++||+|.+||+++|+|+||||||||+++|+|++++.
T Consensus 18 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~ 58 (257)
T PRK10619 18 HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPS 58 (257)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 56899999999999999999999999999999999999874
No 464
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.30 E-value=2.5e-12 Score=109.91 Aligned_cols=41 Identities=44% Similarity=0.700 Sum_probs=38.9
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
+.+++++||+|.+||+++|+|+||||||||+++|+|+++++
T Consensus 17 ~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~ 57 (251)
T PRK14249 17 HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIV 57 (251)
T ss_pred eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCcc
Confidence 45899999999999999999999999999999999999875
No 465
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.30 E-value=2.5e-12 Score=114.25 Aligned_cols=41 Identities=37% Similarity=0.488 Sum_probs=38.9
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
..+|+|+||+|.+||+++|+|+||||||||+|+|+|+++++
T Consensus 18 ~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~ 58 (343)
T TIGR02314 18 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT 58 (343)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 35899999999999999999999999999999999999985
No 466
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.30 E-value=2.3e-12 Score=110.25 Aligned_cols=39 Identities=36% Similarity=0.608 Sum_probs=37.3
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTY 280 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~ 280 (286)
+.+|+++||+|++||+++|+|+||||||||+++|+|+++
T Consensus 17 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 55 (252)
T PRK14256 17 NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHD 55 (252)
T ss_pred eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhccc
Confidence 458999999999999999999999999999999999986
No 467
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.30 E-value=2.7e-12 Score=113.24 Aligned_cols=40 Identities=38% Similarity=0.520 Sum_probs=38.4
Q ss_pred ccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 243 EILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 243 ~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
.+|+++||+|++||++||+|+||||||||+++|+|+++++
T Consensus 40 ~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~ 79 (320)
T PRK13631 40 VALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSK 79 (320)
T ss_pred cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 5899999999999999999999999999999999999875
No 468
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.29 E-value=2.6e-12 Score=110.00 Aligned_cols=40 Identities=40% Similarity=0.586 Sum_probs=37.6
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYL 281 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~ 281 (286)
+.+|+++||+|++||+++|+|+||||||||+++|+|++++
T Consensus 19 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~ 58 (253)
T PRK14261 19 KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDL 58 (253)
T ss_pred eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccC
Confidence 5689999999999999999999999999999999999763
No 469
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.29 E-value=2.6e-12 Score=110.41 Aligned_cols=41 Identities=34% Similarity=0.394 Sum_probs=38.7
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
+.+++++||+|++||+++|+|+||||||||+++|+|+++++
T Consensus 37 ~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~ 77 (264)
T PRK13546 37 FFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPT 77 (264)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC
Confidence 45899999999999999999999999999999999999874
No 470
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.29 E-value=2.8e-12 Score=110.75 Aligned_cols=40 Identities=33% Similarity=0.539 Sum_probs=38.0
Q ss_pred ccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 243 EILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 243 ~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
.+++++||+|++||+++|+|+||||||||+++|+|+++++
T Consensus 23 ~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~ 62 (269)
T PRK13648 23 FTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVK 62 (269)
T ss_pred cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 4899999999999999999999999999999999999874
No 471
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.29 E-value=2.3e-12 Score=110.29 Aligned_cols=39 Identities=49% Similarity=0.706 Sum_probs=36.9
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTY 280 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~ 280 (286)
+.+++++||+|++||+++|+|+||||||||+++|+|+++
T Consensus 19 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 57 (253)
T PRK14242 19 FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMND 57 (253)
T ss_pred eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 458999999999999999999999999999999999974
No 472
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.29 E-value=2.6e-12 Score=108.28 Aligned_cols=41 Identities=41% Similarity=0.649 Sum_probs=38.5
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
+.+++++||++.+||+++|+|+||||||||+++|+|++++.
T Consensus 16 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~ 56 (229)
T cd03254 16 KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQ 56 (229)
T ss_pred CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC
Confidence 34899999999999999999999999999999999999874
No 473
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.29 E-value=2.6e-12 Score=109.75 Aligned_cols=40 Identities=35% Similarity=0.561 Sum_probs=37.9
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYL 281 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~ 281 (286)
+.+++++||+|++||+++|+|+||||||||+++|+|++++
T Consensus 16 ~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~ 55 (250)
T PRK14262 16 KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDH 55 (250)
T ss_pred ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccC
Confidence 4589999999999999999999999999999999999874
No 474
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.29 E-value=3e-12 Score=111.31 Aligned_cols=41 Identities=44% Similarity=0.646 Sum_probs=38.7
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
+.+++++||+|++||+++|+|+||||||||+++|+|+++++
T Consensus 19 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~ 59 (283)
T PRK13636 19 THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPS 59 (283)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 45899999999999999999999999999999999999864
No 475
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.29 E-value=2.9e-12 Score=107.38 Aligned_cols=41 Identities=39% Similarity=0.525 Sum_probs=38.5
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
+.+++++||+|.+||+++|+|+||||||||+++|+|+++++
T Consensus 17 ~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~ 57 (221)
T cd03244 17 PPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELS 57 (221)
T ss_pred cccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCC
Confidence 35899999999999999999999999999999999998774
No 476
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.29 E-value=2.6e-12 Score=110.30 Aligned_cols=40 Identities=40% Similarity=0.670 Sum_probs=38.0
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYL 281 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~ 281 (286)
..+++++||+|++||+++|+|+||||||||+|+|+|++++
T Consensus 20 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~ 59 (259)
T PRK14260 20 SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISEL 59 (259)
T ss_pred eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCc
Confidence 4589999999999999999999999999999999999875
No 477
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.29 E-value=2.9e-12 Score=109.57 Aligned_cols=39 Identities=41% Similarity=0.686 Sum_probs=36.8
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTY 280 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~ 280 (286)
+.+++++||+|.+||+++|+|+||||||||+++|+|+.+
T Consensus 18 ~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (252)
T PRK14239 18 KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMND 56 (252)
T ss_pred eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccc
Confidence 458999999999999999999999999999999999964
No 478
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.29 E-value=3e-12 Score=110.84 Aligned_cols=40 Identities=35% Similarity=0.473 Sum_probs=37.8
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYL 281 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~ 281 (286)
+.+|+++||+|.+||+++|+|+||||||||+++|+|++++
T Consensus 33 ~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~ 72 (274)
T PRK14265 33 FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDL 72 (274)
T ss_pred eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhccccc
Confidence 4589999999999999999999999999999999999864
No 479
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.29 E-value=3.4e-12 Score=107.09 Aligned_cols=41 Identities=41% Similarity=0.664 Sum_probs=39.2
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
..+++++|++|.+||+++|+|+||||||||+++|+||+++.
T Consensus 17 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~ 57 (235)
T COG1122 17 KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPT 57 (235)
T ss_pred ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCC
Confidence 36899999999999999999999999999999999999986
No 480
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.29 E-value=3.3e-12 Score=107.02 Aligned_cols=41 Identities=44% Similarity=0.595 Sum_probs=38.4
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
+.+++++||+|.+||+++|+|+||||||||+++|+|+++++
T Consensus 17 ~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~ 57 (220)
T cd03245 17 IPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPT 57 (220)
T ss_pred cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC
Confidence 35899999999999999999999999999999999998864
No 481
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.29 E-value=3e-12 Score=109.48 Aligned_cols=39 Identities=51% Similarity=0.779 Sum_probs=37.4
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTY 280 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~ 280 (286)
+.+++++||+|.+||+++|+|+||||||||+++|+|+++
T Consensus 17 ~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 55 (251)
T PRK14251 17 YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMND 55 (251)
T ss_pred eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccc
Confidence 458999999999999999999999999999999999987
No 482
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.28 E-value=3.3e-12 Score=107.44 Aligned_cols=40 Identities=35% Similarity=0.615 Sum_probs=38.1
Q ss_pred ccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 243 EILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 243 ~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
.+++++||+|++||+++|+|+||||||||+++|+|++++.
T Consensus 28 ~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~ 67 (226)
T cd03248 28 LVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQ 67 (226)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC
Confidence 4899999999999999999999999999999999999874
No 483
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.28 E-value=3.4e-12 Score=104.64 Aligned_cols=39 Identities=56% Similarity=0.876 Sum_probs=36.7
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTY 280 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~ 280 (286)
+.+++++||++++||+++|+|+||||||||+++|+|+.+
T Consensus 20 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 58 (192)
T cd03232 20 RQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKT 58 (192)
T ss_pred eEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCc
Confidence 458999999999999999999999999999999999864
No 484
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.28 E-value=3.2e-12 Score=110.70 Aligned_cols=41 Identities=37% Similarity=0.611 Sum_probs=38.7
Q ss_pred ccccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCC
Q psy8953 241 NKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYL 281 (286)
Q Consensus 241 ~~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~ 281 (286)
.+.+++++||+|.+||+++|+|+||||||||+++|+|++++
T Consensus 33 ~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p 73 (276)
T PRK14271 33 GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDK 73 (276)
T ss_pred CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCc
Confidence 35689999999999999999999999999999999999986
No 485
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.28 E-value=2.7e-12 Score=110.51 Aligned_cols=40 Identities=35% Similarity=0.490 Sum_probs=37.6
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYL 281 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~ 281 (286)
+.+++++||+|.+||+++|+|+||||||||+++|+|++++
T Consensus 23 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~ 62 (264)
T PRK14243 23 FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDL 62 (264)
T ss_pred EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 4689999999999999999999999999999999999863
No 486
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.28 E-value=3.5e-12 Score=114.06 Aligned_cols=41 Identities=39% Similarity=0.783 Sum_probs=38.9
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
+.+|+++||+|.+||+++|+||||||||||+|+|+|+++++
T Consensus 17 ~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~ 57 (356)
T PRK11650 17 TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERIT 57 (356)
T ss_pred CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCC
Confidence 45899999999999999999999999999999999999875
No 487
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.28 E-value=3.6e-12 Score=109.26 Aligned_cols=42 Identities=43% Similarity=0.649 Sum_probs=39.2
Q ss_pred ccccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 241 NKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 241 ~~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
.+.+++++||+|.+||+++|+|+||||||||+++|+|++++.
T Consensus 22 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~ 63 (257)
T PRK14246 22 DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIY 63 (257)
T ss_pred CceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 356899999999999999999999999999999999998874
No 488
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.28 E-value=3.3e-12 Score=107.47 Aligned_cols=39 Identities=41% Similarity=0.670 Sum_probs=37.6
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTY 280 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~ 280 (286)
+.+++++||+|++||+++|+|+||||||||+|+|+|+++
T Consensus 20 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~ 58 (226)
T cd03234 20 ARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVE 58 (226)
T ss_pred cccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccC
Confidence 468999999999999999999999999999999999998
No 489
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.28 E-value=3.5e-12 Score=109.21 Aligned_cols=40 Identities=30% Similarity=0.504 Sum_probs=38.2
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYL 281 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~ 281 (286)
+.+++++||+|++||+++|+|+||||||||+++|+|++++
T Consensus 16 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~ 55 (254)
T PRK10418 16 QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPA 55 (254)
T ss_pred cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4589999999999999999999999999999999999987
No 490
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.28 E-value=3.9e-12 Score=113.62 Aligned_cols=41 Identities=44% Similarity=0.685 Sum_probs=39.0
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
+.+|+++||++.+||+++|+||||||||||+++|+|+++++
T Consensus 17 ~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~ 57 (353)
T TIGR03265 17 FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQT 57 (353)
T ss_pred eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCC
Confidence 45899999999999999999999999999999999999875
No 491
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.28 E-value=3.8e-12 Score=113.54 Aligned_cols=41 Identities=32% Similarity=0.677 Sum_probs=39.0
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
..+|+++||+|.+||+++|+||||||||||+++|+|+++++
T Consensus 19 ~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~ 59 (351)
T PRK11432 19 NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPT 59 (351)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCC
Confidence 45899999999999999999999999999999999999875
No 492
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.28 E-value=4.8e-12 Score=100.36 Aligned_cols=41 Identities=44% Similarity=0.718 Sum_probs=38.5
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
..++++++|+|.+||+++|+|+||||||||+++|+|+++++
T Consensus 12 ~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~ 52 (157)
T cd00267 12 RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPT 52 (157)
T ss_pred eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 45899999999999999999999999999999999999864
No 493
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.28 E-value=4.1e-12 Score=109.84 Aligned_cols=41 Identities=39% Similarity=0.596 Sum_probs=38.6
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
+.+++++||+|.+||+++|+|+||||||||+++|+|++++.
T Consensus 22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~ 62 (271)
T PRK13632 22 NNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQ 62 (271)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 45899999999999999999999999999999999999874
No 494
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.27 E-value=3.5e-12 Score=110.11 Aligned_cols=39 Identities=36% Similarity=0.582 Sum_probs=37.0
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTY 280 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~ 280 (286)
+.+++++||+|++||+++|+|+||||||||+++|+|+++
T Consensus 34 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 72 (268)
T PRK14248 34 KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMND 72 (268)
T ss_pred ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhccc
Confidence 568999999999999999999999999999999999865
No 495
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.27 E-value=4e-12 Score=104.39 Aligned_cols=41 Identities=63% Similarity=0.873 Sum_probs=38.3
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCC--CCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLT--YLN 282 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~--~~~ 282 (286)
+.+++++||+|.+||+++|+|+||||||||+++|+|++ ++.
T Consensus 22 ~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~ 64 (194)
T cd03213 22 KQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGV 64 (194)
T ss_pred ccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCC
Confidence 45899999999999999999999999999999999998 653
No 496
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.27 E-value=3.8e-12 Score=110.00 Aligned_cols=39 Identities=36% Similarity=0.590 Sum_probs=37.4
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTY 280 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~ 280 (286)
+.+++++||+|.+||+++|+|+||||||||+++|+|+++
T Consensus 37 ~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~ 75 (271)
T PRK14238 37 DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVE 75 (271)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 458999999999999999999999999999999999987
No 497
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.27 E-value=4.5e-12 Score=106.23 Aligned_cols=41 Identities=39% Similarity=0.766 Sum_probs=38.5
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
+.+++++||++.+||+++|+|+||||||||+++|+|+++++
T Consensus 18 ~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~ 58 (220)
T TIGR02982 18 KQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQ 58 (220)
T ss_pred eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 45899999999999999999999999999999999998874
No 498
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.27 E-value=4.3e-12 Score=109.38 Aligned_cols=40 Identities=38% Similarity=0.543 Sum_probs=38.0
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYL 281 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~ 281 (286)
+.+++++||+|++||+++|+|+||||||||+++|+|++++
T Consensus 29 ~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~ 68 (265)
T PRK14252 29 YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDL 68 (265)
T ss_pred eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCC
Confidence 4689999999999999999999999999999999999875
No 499
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.27 E-value=4.3e-12 Score=113.58 Aligned_cols=41 Identities=41% Similarity=0.672 Sum_probs=39.0
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
..+|+++||+|.+||+++|+||||||||||+++|+|+++++
T Consensus 18 ~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~ 58 (362)
T TIGR03258 18 NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAA 58 (362)
T ss_pred eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 45899999999999999999999999999999999999885
No 500
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.27 E-value=8.2e-12 Score=97.63 Aligned_cols=153 Identities=18% Similarity=0.239 Sum_probs=104.0
Q ss_pred Cchhhhh-cCCCCCCceeEEEECC---eecCchhh------hcccceeeEEecCcc--c----CCCCCHHHHH-HHHHhc
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNG---QERKSACI------EQFLKLSCYIQQDDA--L----RPKLTVTEAM-MIASHL 63 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g---~~~~~~~~------~~~~~~~g~v~Q~~~--~----~~~~tV~e~l-~f~~~~ 63 (286)
|||||++ +++... ..|.|.+.- ++.+...+ .-++.-.|||-|+|. + -..-.+-|-+ +.+++-
T Consensus 45 KtTLL~~is~rl~p-~~G~v~Y~~r~~~~~dl~~msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RH 123 (258)
T COG4107 45 KTTLLKCISGRLTP-DAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARH 123 (258)
T ss_pred HHhHHHHHhcccCC-CCCeEEEEcCCCCchhHhhhchHHHHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhh
Confidence 8999999 996544 567766543 33321111 112457899999984 3 1333454543 344431
Q ss_pred CCCCCCCHHHHHHHHh-----hh-hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC-CC
Q psy8953 64 KLGFKVSTQEKKDQVS-----LE-LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ-GR 117 (286)
Q Consensus 64 ~~~~~~~~~~~~~~v~-----l~-~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~-g~ 117 (286)
=.+......+-.++|+ ++ .+.++|||.+| ||-|||..-+..++++++.|..+ |.
T Consensus 124 YG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~l 203 (258)
T COG4107 124 YGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGL 203 (258)
T ss_pred hhhHHHHHHHHHHhcccCcccccCcccccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCc
Confidence 1111112233335555 22 56678999988 99999999999999999999887 99
Q ss_pred EEEEEEcCCCHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 118 TVVATIHTPSALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 118 tii~~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
.+|+++|+.. ...-++||+++|.+|+++..|-.+.+.
T Consensus 204 a~viVTHDl~-VarLla~rlmvmk~g~vve~GLTDrvL 240 (258)
T COG4107 204 AVVIVTHDLA-VARLLADRLMVMKQGQVVESGLTDRVL 240 (258)
T ss_pred eEEEEechhH-HHHHhhhcceeecCCCEeccccccccc
Confidence 9999999985 355669999999999999887655443
Done!