Query psy8953
Match_columns 286
No_of_seqs 202 out of 2585
Neff 9.3
Searched_HMMs 29240
Date Fri Aug 16 23:49:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8953.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8953hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g5u_A MCG1178, multidrug resi 100.0 1.9E-28 6.5E-33 248.9 15.3 145 1-155 429-612 (1284)
2 3tui_C Methionine import ATP-b 100.0 2E-28 6.8E-33 216.4 10.3 150 1-155 67-252 (366)
3 3rlf_A Maltose/maltodextrin im 99.9 2.7E-28 9.1E-33 216.9 10.2 149 1-156 42-223 (381)
4 2iw3_A Elongation factor 3A; a 99.9 3.5E-28 1.2E-32 237.3 11.5 218 1-282 474-726 (986)
5 3gfo_A Cobalt import ATP-bindi 99.9 2.9E-28 9.8E-33 209.0 9.3 151 1-156 47-233 (275)
6 3fvq_A Fe(3+) IONS import ATP- 99.9 4.5E-28 1.5E-32 214.0 8.2 151 1-156 43-228 (359)
7 3ux8_A Excinuclease ABC, A sub 99.9 2.9E-28 1E-32 233.9 7.3 207 15-276 99-369 (670)
8 1z47_A CYSA, putative ABC-tran 99.9 2.7E-27 9.2E-32 209.1 10.5 149 1-156 54-235 (355)
9 2it1_A 362AA long hypothetical 99.9 3.5E-27 1.2E-31 209.1 10.1 149 1-156 42-223 (362)
10 3bk7_A ABC transporter ATP-bin 99.9 4.8E-27 1.6E-31 221.7 11.2 234 1-282 130-409 (607)
11 3tif_A Uncharacterized ABC tra 99.9 2.9E-27 1E-31 198.8 8.7 151 1-154 44-232 (235)
12 1v43_A Sugar-binding transport 99.9 4.2E-27 1.4E-31 209.3 10.1 149 1-156 50-231 (372)
13 1g29_1 MALK, maltose transport 99.9 4.9E-27 1.7E-31 209.2 10.4 151 1-156 42-229 (372)
14 1oxx_K GLCV, glucose, ABC tran 99.9 4.1E-27 1.4E-31 208.4 9.2 150 1-155 44-229 (353)
15 2yyz_A Sugar ABC transporter, 99.9 2.9E-27 1E-31 209.3 8.1 149 1-156 42-223 (359)
16 2olj_A Amino acid ABC transpor 99.9 8.5E-27 2.9E-31 198.7 10.6 151 1-156 63-248 (263)
17 1yqt_A RNAse L inhibitor; ATP- 99.9 8.4E-27 2.9E-31 217.7 10.7 235 1-282 60-339 (538)
18 1b0u_A Histidine permease; ABC 99.9 3.1E-26 1.1E-30 195.5 10.6 151 1-156 45-242 (262)
19 1vpl_A ABC transporter, ATP-bi 99.9 2.5E-26 8.4E-31 195.2 8.7 150 1-156 54-235 (256)
20 3d31_A Sulfate/molybdate ABC t 99.9 2.5E-26 8.6E-31 202.7 8.6 148 1-155 39-216 (348)
21 2pcj_A ABC transporter, lipopr 99.9 3.4E-26 1.2E-30 191.0 8.7 145 1-151 43-223 (224)
22 3ozx_A RNAse L inhibitor; ATP 99.9 3.1E-26 1.1E-30 213.4 7.7 236 1-282 38-321 (538)
23 1ji0_A ABC transporter; ATP bi 99.9 6.3E-26 2.2E-30 191.2 7.4 152 1-155 45-227 (240)
24 2onk_A Molybdate/tungstate ABC 99.9 2.8E-26 9.6E-31 193.1 5.2 151 1-156 37-216 (240)
25 4g1u_C Hemin import ATP-bindin 99.9 5.7E-26 2E-30 194.1 7.0 152 1-155 50-236 (266)
26 1g6h_A High-affinity branched- 99.9 5.2E-26 1.8E-30 193.7 5.2 151 1-153 46-239 (257)
27 2qi9_C Vitamin B12 import ATP- 99.9 3.1E-25 1.1E-29 187.7 7.2 148 1-155 39-221 (249)
28 2yz2_A Putative ABC transporte 99.9 8.2E-25 2.8E-29 187.1 9.3 151 1-156 46-227 (266)
29 2r6f_A Excinuclease ABC subuni 99.9 3E-25 1E-29 215.3 6.2 175 47-276 448-671 (972)
30 3j16_B RLI1P; ribosome recycli 99.9 5.2E-25 1.8E-29 207.5 6.9 65 82-147 218-301 (608)
31 3nh6_A ATP-binding cassette SU 99.9 1.2E-24 4E-29 189.0 6.9 146 1-156 93-277 (306)
32 2d2e_A SUFC protein; ABC-ATPas 99.9 1.4E-24 4.8E-29 184.1 5.4 151 1-152 42-229 (250)
33 2ygr_A Uvrabc system protein A 99.9 5.6E-24 1.9E-28 207.1 9.4 105 46-156 464-617 (993)
34 2ff7_A Alpha-hemolysin translo 99.9 4.6E-24 1.6E-28 180.5 7.2 145 1-155 48-231 (247)
35 2ihy_A ABC transporter, ATP-bi 99.9 7.9E-25 2.7E-29 188.2 2.2 153 1-155 60-251 (279)
36 2vf7_A UVRA2, excinuclease ABC 99.9 6.2E-25 2.1E-29 212.5 1.0 203 8-280 291-549 (842)
37 1mv5_A LMRA, multidrug resista 99.9 2.2E-24 7.6E-29 182.1 2.7 147 1-156 41-226 (243)
38 2zu0_C Probable ATP-dependent 99.9 1E-23 3.5E-28 180.3 6.2 154 1-156 59-254 (267)
39 2ixe_A Antigen peptide transpo 99.9 2.9E-24 1E-28 184.0 2.4 148 1-156 58-245 (271)
40 2ghi_A Transport protein; mult 99.9 1.1E-23 3.6E-28 179.6 5.8 145 1-156 59-242 (260)
41 3pih_A Uvrabc system protein A 99.9 5.2E-23 1.8E-27 200.7 11.1 132 4-156 384-560 (916)
42 3b5x_A Lipid A export ATP-bind 99.9 9.8E-23 3.3E-27 192.6 7.8 147 1-156 382-567 (582)
43 3gd7_A Fusion complex of cysti 99.9 8.7E-24 3E-28 189.1 0.4 144 1-156 60-242 (390)
44 2yl4_A ATP-binding cassette SU 99.9 1.4E-22 4.9E-27 191.9 8.8 149 1-156 383-570 (595)
45 2nq2_C Hypothetical ABC transp 99.9 1.8E-22 6.1E-27 171.3 8.3 139 1-155 44-216 (253)
46 3qf4_B Uncharacterized ABC tra 99.9 1.6E-22 5.5E-27 191.5 8.9 146 1-156 394-578 (598)
47 3b60_A Lipid A export ATP-bind 99.9 1.2E-22 4E-27 192.1 7.3 147 1-156 382-567 (582)
48 2pjz_A Hypothetical protein ST 99.9 1.5E-22 5.2E-27 172.4 6.5 141 1-155 43-214 (263)
49 3qf4_A ABC transporter, ATP-bi 99.9 1E-22 3.4E-27 192.4 4.7 146 1-156 382-566 (587)
50 4a82_A Cystic fibrosis transme 99.9 2.1E-22 7E-27 190.1 6.7 146 1-156 380-564 (578)
51 1sgw_A Putative ABC transporte 99.9 5.4E-22 1.9E-26 163.9 8.2 133 1-141 48-207 (214)
52 4f4c_A Multidrug resistance pr 99.8 7.5E-22 2.6E-26 201.2 3.5 148 1-156 1118-1304(1321)
53 2pze_A Cystic fibrosis transme 99.8 8.2E-21 2.8E-25 158.8 4.1 134 1-155 47-217 (229)
54 2cbz_A Multidrug resistance-as 99.8 4.2E-21 1.4E-25 161.4 2.1 135 1-156 44-217 (237)
55 4f4c_A Multidrug resistance pr 99.8 2.1E-20 7.2E-25 190.6 4.8 145 1-155 457-640 (1321)
56 3g5u_A MCG1178, multidrug resi 99.8 2.3E-20 7.7E-25 189.9 4.5 148 1-156 1072-1258(1284)
57 2bbs_A Cystic fibrosis transme 99.8 2E-19 7E-24 155.1 3.7 130 1-155 77-246 (290)
58 1tf7_A KAIC; homohexamer, hexa 99.7 4.8E-20 1.6E-24 172.2 -8.1 135 1-145 52-212 (525)
59 3bk7_A ABC transporter ATP-bin 99.7 8.1E-18 2.8E-22 158.8 2.0 138 1-156 395-563 (607)
60 1yqt_A RNAse L inhibitor; ATP- 99.7 2.2E-17 7.7E-22 154.1 4.5 138 1-156 325-493 (538)
61 3ozx_A RNAse L inhibitor; ATP 99.6 6.9E-17 2.4E-21 150.5 4.5 139 1-155 307-476 (538)
62 3j16_B RLI1P; ribosome recycli 99.6 1E-16 3.4E-21 151.2 4.1 138 1-156 391-559 (608)
63 3ux8_A Excinuclease ABC, A sub 99.5 4.3E-15 1.5E-19 142.5 3.0 99 50-155 504-639 (670)
64 2pcj_A ABC transporter, lipopr 99.5 2E-14 6.7E-19 119.6 5.4 41 242-282 17-57 (224)
65 4g1u_C Hemin import ATP-bindin 99.5 2.6E-14 8.8E-19 121.8 5.6 42 241-282 23-64 (266)
66 1ji0_A ABC transporter; ATP bi 99.5 3.1E-14 1.1E-18 119.6 5.5 41 242-282 19-59 (240)
67 1b0u_A Histidine permease; ABC 99.5 3.1E-14 1.1E-18 121.1 5.5 41 242-282 19-59 (262)
68 3tif_A Uncharacterized ABC tra 99.5 3E-14 1E-18 119.3 5.3 41 242-282 18-58 (235)
69 2olj_A Amino acid ABC transpor 99.5 3.2E-14 1.1E-18 120.9 5.5 42 241-282 36-77 (263)
70 1g6h_A High-affinity branched- 99.5 3.2E-14 1.1E-18 120.8 5.1 42 241-282 19-60 (257)
71 1vpl_A ABC transporter, ATP-bi 99.5 4.1E-14 1.4E-18 119.9 5.5 42 241-282 27-68 (256)
72 3gfo_A Cobalt import ATP-bindi 99.5 5E-14 1.7E-18 120.5 5.8 41 242-282 21-61 (275)
73 1sgw_A Putative ABC transporte 99.5 4.2E-14 1.4E-18 116.6 5.1 40 243-282 23-62 (214)
74 2ihy_A ABC transporter, ATP-bi 99.5 4.7E-14 1.6E-18 121.0 5.6 42 241-282 33-74 (279)
75 2ff7_A Alpha-hemolysin translo 99.4 7.6E-14 2.6E-18 117.7 5.7 41 242-282 22-62 (247)
76 2pze_A Cystic fibrosis transme 99.4 8.1E-14 2.8E-18 116.3 5.7 41 242-282 21-61 (229)
77 2nq2_C Hypothetical ABC transp 99.4 8.7E-14 3E-18 117.7 5.6 41 242-282 18-58 (253)
78 3fvq_A Fe(3+) IONS import ATP- 99.4 9.1E-14 3.1E-18 122.7 5.5 42 241-282 16-57 (359)
79 2ixe_A Antigen peptide transpo 99.4 1.1E-13 3.9E-18 118.2 5.7 41 242-282 32-72 (271)
80 2cbz_A Multidrug resistance-as 99.4 8.7E-14 3E-18 116.6 4.9 41 242-282 18-58 (237)
81 3rlf_A Maltose/maltodextrin im 99.4 1.5E-13 5.2E-18 122.1 5.8 42 241-282 15-56 (381)
82 2d2e_A SUFC protein; ABC-ATPas 99.4 1.2E-13 4.2E-18 116.6 5.0 40 242-281 16-57 (250)
83 2yz2_A Putative ABC transporte 99.4 1.5E-13 5E-18 117.3 5.3 41 242-282 20-60 (266)
84 3tui_C Methionine import ATP-b 99.4 2.2E-13 7.4E-18 120.4 5.7 41 242-282 41-81 (366)
85 1z47_A CYSA, putative ABC-tran 99.4 2.5E-13 8.5E-18 119.9 6.1 41 242-282 28-68 (355)
86 2yyz_A Sugar ABC transporter, 99.4 2.7E-13 9.1E-18 119.9 5.7 41 242-282 16-56 (359)
87 2zu0_C Probable ATP-dependent 99.4 2.2E-13 7.7E-18 116.1 4.9 39 241-279 32-70 (267)
88 2it1_A 362AA long hypothetical 99.4 3.2E-13 1.1E-17 119.6 6.0 41 242-282 16-56 (362)
89 1g29_1 MALK, maltose transport 99.4 3.6E-13 1.2E-17 119.8 5.8 41 242-282 16-56 (372)
90 1v43_A Sugar-binding transport 99.4 3.7E-13 1.3E-17 119.6 5.8 42 241-282 23-64 (372)
91 2ghi_A Transport protein; mult 99.4 3.9E-13 1.3E-17 114.2 5.3 39 243-281 34-72 (260)
92 2r6f_A Excinuclease ABC subuni 99.4 1.6E-13 5.6E-18 133.6 3.1 103 50-156 806-942 (972)
93 1oxx_K GLCV, glucose, ABC tran 99.4 2.9E-13 1E-17 119.6 4.4 41 242-282 16-58 (353)
94 2iw3_A Elongation factor 3A; a 99.4 4.7E-13 1.6E-17 131.2 5.9 63 84-150 900-981 (986)
95 2bbs_A Cystic fibrosis transme 99.4 3.8E-13 1.3E-17 115.9 4.7 41 242-282 51-91 (290)
96 3nh6_A ATP-binding cassette SU 99.3 4.2E-13 1.4E-17 116.3 4.7 41 242-282 67-107 (306)
97 3pih_A Uvrabc system protein A 99.3 2.8E-13 9.5E-18 132.5 2.2 103 50-156 766-902 (916)
98 2vf7_A UVRA2, excinuclease ABC 99.3 1.5E-13 5.2E-18 133.2 0.1 72 82-155 727-826 (842)
99 2pjz_A Hypothetical protein ST 99.3 1.2E-12 4.2E-17 111.2 5.1 39 242-282 18-56 (263)
100 3gd7_A Fusion complex of cysti 99.3 2.2E-12 7.4E-17 115.3 5.4 39 242-280 34-72 (390)
101 2ygr_A Uvrabc system protein A 99.3 5.3E-13 1.8E-17 130.4 1.5 103 50-156 824-960 (993)
102 1htw_A HI0065; nucleotide-bind 99.3 3.6E-13 1.2E-17 105.7 0.1 38 242-279 20-57 (158)
103 2dpy_A FLII, flagellum-specifi 99.3 4.7E-14 1.6E-18 128.3 -6.5 143 1-154 170-342 (438)
104 3sop_A Neuronal-specific septi 99.2 1.1E-12 3.6E-17 112.1 -0.5 116 1-127 15-151 (270)
105 4aby_A DNA repair protein RECN 99.2 1.1E-11 3.9E-16 112.1 5.7 61 86-149 296-381 (415)
106 2npi_A Protein CLP1; CLP1-PCF1 99.2 8.4E-14 2.9E-18 127.3 -9.3 138 1-155 151-337 (460)
107 3b60_A Lipid A export ATP-bind 99.2 2.1E-11 7.3E-16 115.0 5.4 41 242-282 356-396 (582)
108 3b5x_A Lipid A export ATP-bind 99.1 2.2E-11 7.6E-16 114.9 5.3 41 242-282 356-396 (582)
109 2yl4_A ATP-binding cassette SU 99.1 2E-11 6.7E-16 115.6 4.6 40 243-282 358-397 (595)
110 4a82_A Cystic fibrosis transme 99.1 2.1E-11 7.3E-16 114.9 4.0 41 242-282 354-394 (578)
111 3qf4_B Uncharacterized ABC tra 99.1 2.9E-11 1E-15 114.4 4.1 41 242-282 368-408 (598)
112 3qf4_A ABC transporter, ATP-bi 99.1 3.5E-11 1.2E-15 113.6 4.5 41 242-282 356-396 (587)
113 2v9p_A Replication protein E1; 99.1 1.5E-11 5.2E-16 106.2 0.0 38 242-279 113-150 (305)
114 3euj_A Chromosome partition pr 99.0 1.2E-10 4.2E-15 106.4 3.8 40 242-282 17-56 (483)
115 1tq4_A IIGP1, interferon-induc 98.9 1.1E-10 3.7E-15 105.0 0.2 41 242-282 36-96 (413)
116 1znw_A Guanylate kinase, GMP k 98.9 2.5E-12 8.6E-17 105.5 -10.0 135 1-141 33-202 (207)
117 2obl_A ESCN; ATPase, hydrolase 98.9 3.4E-10 1.2E-14 99.9 2.3 40 242-282 59-98 (347)
118 2gza_A Type IV secretion syste 98.9 2.3E-10 7.8E-15 101.7 0.1 39 244-282 164-202 (361)
119 2pt7_A CAG-ALFA; ATPase, prote 98.9 1.7E-10 5.9E-15 101.2 -1.1 40 243-282 159-198 (330)
120 2npi_A Protein CLP1; CLP1-PCF1 98.9 2.4E-10 8.3E-15 104.4 -0.2 37 245-281 128-164 (460)
121 2qag_B Septin-6, protein NEDD5 98.9 4.1E-10 1.4E-14 101.3 1.3 38 241-279 27-66 (427)
122 3b9q_A Chloroplast SRP recepto 98.9 4.1E-10 1.4E-14 97.5 1.1 37 246-282 91-127 (302)
123 2dpy_A FLII, flagellum-specifi 98.8 8.9E-10 3E-14 100.1 2.0 40 242-282 145-184 (438)
124 3qf7_A RAD50; ABC-ATPase, ATPa 98.8 8E-10 2.7E-14 98.3 1.1 62 84-147 278-364 (365)
125 2obl_A ESCN; ATPase, hydrolase 98.8 1E-10 3.5E-15 103.2 -4.8 142 1-154 84-253 (347)
126 3aez_A Pantothenate kinase; tr 98.8 5.5E-10 1.9E-14 97.2 -0.4 31 252-282 87-117 (312)
127 3szr_A Interferon-induced GTP- 98.8 1.2E-09 4.3E-14 103.3 1.9 150 1-155 58-236 (608)
128 2og2_A Putative signal recogni 98.8 1.1E-09 3.8E-14 96.7 1.0 37 246-282 148-184 (359)
129 2yhs_A FTSY, cell division pro 98.8 1.2E-09 4.1E-14 99.7 1.1 38 245-282 283-320 (503)
130 1tf7_A KAIC; homohexamer, hexa 98.8 1E-09 3.4E-14 102.4 0.6 40 242-281 25-67 (525)
131 2qm8_A GTPase/ATPase; G protei 98.7 7.6E-10 2.6E-14 97.4 -1.1 40 242-281 42-81 (337)
132 1tq4_A IIGP1, interferon-induc 98.7 6.7E-10 2.3E-14 99.9 -2.2 130 1-147 82-258 (413)
133 1lw7_A Transcriptional regulat 98.7 2.2E-09 7.5E-14 95.5 1.0 39 244-282 157-197 (365)
134 1sq5_A Pantothenate kinase; P- 98.7 1.4E-09 4.7E-14 94.6 -0.4 38 243-280 49-105 (308)
135 1cr0_A DNA primase/helicase; R 98.7 1.7E-09 5.9E-14 93.3 0.1 40 243-282 23-62 (296)
136 2ehv_A Hypothetical protein PH 98.7 7.4E-09 2.5E-13 86.7 3.4 28 251-278 26-55 (251)
137 4aby_A DNA repair protein RECN 98.7 3.4E-09 1.2E-13 95.8 0.9 38 243-281 49-86 (415)
138 1e69_A Chromosome segregation 98.7 2.6E-09 8.8E-14 93.4 -0.3 60 84-146 218-302 (322)
139 1f2t_B RAD50 ABC-ATPase; DNA d 98.6 8.1E-09 2.8E-13 79.8 1.4 51 93-145 90-142 (148)
140 2oap_1 GSPE-2, type II secreti 98.6 5.7E-09 1.9E-13 96.6 0.1 41 242-282 247-287 (511)
141 3thx_B DNA mismatch repair pro 98.6 1.2E-08 4.1E-13 100.1 2.3 38 242-279 660-697 (918)
142 1wb9_A DNA mismatch repair pro 98.6 2.1E-08 7.2E-13 97.3 3.7 38 242-280 595-632 (800)
143 1ls1_A Signal recognition part 98.6 7.8E-09 2.7E-13 89.2 0.4 34 246-281 91-124 (295)
144 1rj9_A FTSY, signal recognitio 98.5 2.2E-08 7.4E-13 86.7 2.5 29 254-282 101-129 (304)
145 1ewq_A DNA mismatch repair pro 98.5 3.2E-08 1.1E-12 95.5 3.3 36 242-280 566-601 (765)
146 3nwj_A ATSK2; P loop, shikimat 98.5 5.5E-09 1.9E-13 87.9 -1.9 40 242-281 32-74 (250)
147 3thx_A DNA mismatch repair pro 98.5 5.9E-08 2E-12 95.5 4.5 34 242-275 649-682 (934)
148 2x8a_A Nuclear valosin-contain 98.5 1.5E-08 5E-13 86.6 -0.1 40 242-283 33-72 (274)
149 2o8b_B DNA mismatch repair pro 98.5 3.1E-08 1.1E-12 98.5 2.2 38 242-280 769-813 (1022)
150 3e70_C DPA, signal recognition 98.5 3.2E-08 1.1E-12 86.5 1.8 31 252-282 126-156 (328)
151 1p9r_A General secretion pathw 98.5 2.4E-08 8.2E-13 90.1 0.8 39 242-282 156-194 (418)
152 4eun_A Thermoresistant glucoki 98.5 5.6E-08 1.9E-12 78.9 2.7 30 250-279 24-53 (200)
153 2ewv_A Twitching motility prot 98.5 1.9E-08 6.5E-13 89.6 -0.3 37 244-282 127-163 (372)
154 1u0l_A Probable GTPase ENGC; p 98.4 5E-08 1.7E-12 84.4 1.9 32 251-282 165-196 (301)
155 3b85_A Phosphate starvation-in 98.4 5.5E-09 1.9E-13 85.5 -4.1 112 1-144 35-171 (208)
156 2v9p_A Replication protein E1; 98.4 2.5E-10 8.6E-15 98.6 -12.9 113 1-160 139-270 (305)
157 2qag_C Septin-7; cell cycle, c 98.4 1.9E-07 6.6E-12 84.1 4.7 35 241-281 23-57 (418)
158 1t9h_A YLOQ, probable GTPase E 98.4 3.4E-08 1.1E-12 85.4 -0.5 32 251-282 169-200 (307)
159 1svm_A Large T antigen; AAA+ f 98.4 7E-08 2.4E-12 85.8 1.4 37 243-279 157-193 (377)
160 2rcn_A Probable GTPase ENGC; Y 98.4 2.3E-07 7.8E-12 81.8 4.5 38 244-282 205-243 (358)
161 3jvv_A Twitching mobility prot 98.4 4E-08 1.4E-12 86.8 -0.7 32 251-282 119-150 (356)
162 3ec2_A DNA replication protein 98.4 1E-07 3.4E-12 75.9 1.7 32 249-280 32-63 (180)
163 1udx_A The GTP-binding protein 98.3 2.1E-07 7.1E-12 83.9 3.3 35 245-279 147-181 (416)
164 3tqc_A Pantothenate kinase; bi 98.3 5.8E-08 2E-12 84.5 -1.1 40 242-281 73-118 (321)
165 1s96_A Guanylate kinase, GMP k 98.3 5E-09 1.7E-13 86.5 -7.7 128 1-158 29-162 (219)
166 1ixz_A ATP-dependent metallopr 98.3 1.1E-07 3.7E-12 80.0 0.2 36 243-280 39-74 (254)
167 1iy2_A ATP-dependent metallopr 98.3 1.3E-07 4.4E-12 80.7 0.3 36 243-280 63-98 (278)
168 2kjq_A DNAA-related protein; s 98.2 3.7E-07 1.3E-11 70.5 2.5 32 244-280 30-61 (149)
169 4gp7_A Metallophosphoesterase; 98.2 2.3E-08 8E-13 79.1 -4.6 84 38-128 42-161 (171)
170 1f2t_A RAD50 ABC-ATPase; DNA d 98.2 6.9E-07 2.3E-11 69.0 3.8 31 247-278 16-46 (149)
171 2yv5_A YJEQ protein; hydrolase 98.2 7E-07 2.4E-11 77.2 4.3 30 252-282 162-191 (302)
172 2bdt_A BH3686; alpha-beta prot 98.2 3.9E-08 1.3E-12 78.9 -3.4 134 1-154 15-182 (189)
173 1ye8_A Protein THEP1, hypothet 98.2 2.5E-08 8.5E-13 79.6 -4.7 48 93-147 110-159 (178)
174 2pt7_A CAG-ALFA; ATPase, prote 98.2 3.6E-06 1.2E-10 73.6 8.3 112 1-149 184-296 (330)
175 1nlf_A Regulatory protein REPA 98.2 7.8E-07 2.7E-11 75.9 3.8 30 251-280 26-55 (279)
176 1pzn_A RAD51, DNA repair and r 98.2 3.9E-07 1.3E-11 80.4 1.8 35 245-279 120-155 (349)
177 1pzn_A RAD51, DNA repair and r 98.2 9.4E-08 3.2E-12 84.4 -2.6 135 1-149 144-308 (349)
178 1in4_A RUVB, holliday junction 98.2 1E-07 3.4E-12 83.7 -2.5 39 242-280 31-76 (334)
179 2ehv_A Hypothetical protein PH 98.2 1.1E-08 3.8E-13 85.6 -8.3 134 1-141 43-206 (251)
180 1zu4_A FTSY; GTPase, signal re 98.1 3.6E-07 1.2E-11 79.6 0.8 37 245-281 95-131 (320)
181 3szr_A Interferon-induced GTP- 98.1 6.9E-07 2.4E-11 84.5 1.9 24 258-281 48-71 (608)
182 1vma_A Cell division protein F 98.1 5.6E-07 1.9E-11 77.9 1.1 34 249-282 98-131 (306)
183 3qkt_A DNA double-strand break 98.1 5.4E-07 1.8E-11 79.2 0.8 47 93-141 281-327 (339)
184 3cr8_A Sulfate adenylyltranfer 98.1 5.8E-07 2E-11 83.8 0.7 31 251-281 365-395 (552)
185 3b9q_A Chloroplast SRP recepto 98.1 1.4E-06 4.6E-11 75.3 2.7 116 1-125 113-256 (302)
186 4ad8_A DNA repair protein RECN 98.1 1.4E-06 4.8E-11 80.9 3.0 48 93-143 426-473 (517)
187 2qnr_A Septin-2, protein NEDD5 98.1 2.8E-07 9.7E-12 79.6 -1.8 117 1-127 31-168 (301)
188 2o5v_A DNA replication and rep 98.0 5.6E-07 1.9E-11 79.5 -0.3 54 93-154 301-354 (359)
189 4a74_A DNA repair and recombin 98.0 9.8E-08 3.3E-12 78.7 -5.9 130 1-143 38-200 (231)
190 4ad8_A DNA repair protein RECN 98.0 1.5E-06 5.1E-11 80.8 1.0 36 244-280 50-85 (517)
191 1oix_A RAS-related protein RAB 97.9 4.9E-06 1.7E-10 66.6 3.5 25 257-281 31-55 (191)
192 2px0_A Flagellar biosynthesis 97.9 2.5E-06 8.4E-11 73.5 1.8 29 253-281 103-131 (296)
193 3kta_B Chromosome segregation 97.9 3E-06 1E-10 67.0 1.8 46 93-141 95-140 (173)
194 3k1j_A LON protease, ATP-depen 97.9 1.7E-06 5.9E-11 81.8 0.5 41 242-282 47-87 (604)
195 2p67_A LAO/AO transport system 97.8 3.1E-06 1E-10 74.4 1.0 39 242-280 43-81 (341)
196 3lda_A DNA repair protein RAD5 97.8 1E-05 3.5E-10 72.5 4.4 31 251-281 174-206 (400)
197 1z6g_A Guanylate kinase; struc 97.8 2.6E-08 8.8E-13 82.1 -11.8 135 1-141 36-208 (218)
198 3m6a_A ATP-dependent protease 97.8 2.8E-06 9.7E-11 79.3 0.4 39 244-283 98-136 (543)
199 1odf_A YGR205W, hypothetical 3 97.8 7.7E-06 2.6E-10 70.1 2.4 28 254-281 30-57 (290)
200 2gza_A Type IV secretion syste 97.8 2E-05 6.7E-10 69.8 5.1 119 1-151 188-310 (361)
201 2og2_A Putative signal recogni 97.8 7.5E-06 2.6E-10 72.2 2.2 115 1-125 170-313 (359)
202 2dhr_A FTSH; AAA+ protein, hex 97.7 8E-06 2.7E-10 75.2 1.3 36 243-280 54-89 (499)
203 1rj9_A FTSY, signal recognitio 97.6 8.5E-06 2.9E-10 70.4 0.0 121 1-127 115-259 (304)
204 2ffh_A Protein (FFH); SRP54, s 97.6 1.8E-05 6.2E-10 71.3 1.9 34 246-281 91-124 (425)
205 2www_A Methylmalonic aciduria 97.6 3.4E-05 1.2E-09 67.9 3.4 27 253-279 72-98 (349)
206 1lv7_A FTSH; alpha/beta domain 97.5 2.4E-05 8.3E-10 65.6 1.7 35 245-281 37-71 (257)
207 3hr8_A Protein RECA; alpha and 97.5 4.6E-05 1.6E-09 67.1 3.5 29 251-279 57-85 (356)
208 3t34_A Dynamin-related protein 97.5 5.5E-05 1.9E-09 66.8 3.9 33 243-278 25-57 (360)
209 1ypw_A Transitional endoplasmi 97.5 3.1E-05 1.1E-09 75.5 2.3 35 249-283 232-266 (806)
210 1j8m_F SRP54, signal recogniti 97.5 1.8E-05 6.2E-10 68.0 0.4 32 248-280 92-123 (297)
211 2eyu_A Twitching motility prot 97.5 7.6E-05 2.6E-09 62.9 4.0 109 1-142 38-147 (261)
212 3ice_A Transcription terminati 97.5 5.8E-05 2E-09 66.7 3.3 33 247-279 166-198 (422)
213 1sxj_C Activator 1 40 kDa subu 97.4 1.7E-05 5.9E-10 69.4 -0.3 38 242-279 31-70 (340)
214 2zr9_A Protein RECA, recombina 97.4 8.8E-05 3E-09 65.2 3.8 27 251-277 57-83 (349)
215 3aez_A Pantothenate kinase; tr 97.4 1.4E-05 4.8E-10 69.2 -1.4 116 1-144 103-246 (312)
216 1w1w_A Structural maintenance 97.4 3.9E-05 1.3E-09 69.5 1.3 47 93-141 364-410 (430)
217 3e70_C DPA, signal recognition 97.3 1.1E-05 3.9E-10 70.3 -2.5 117 1-125 142-278 (328)
218 1sxj_E Activator 1 40 kDa subu 97.3 7E-05 2.4E-09 65.6 2.4 27 256-282 37-64 (354)
219 2p5t_B PEZT; postsegregational 97.3 4.9E-05 1.7E-09 63.7 1.2 30 251-280 28-57 (253)
220 3jvv_A Twitching mobility prot 97.3 0.0001 3.6E-09 64.9 3.4 110 1-143 136-246 (356)
221 1u0l_A Probable GTPase ENGC; p 97.3 5.3E-05 1.8E-09 65.3 1.1 59 1-61 182-260 (301)
222 3asz_A Uridine kinase; cytidin 97.2 6.8E-06 2.3E-10 66.8 -4.8 89 37-127 33-162 (211)
223 2r6a_A DNAB helicase, replicat 97.2 9.8E-05 3.4E-09 67.3 1.7 36 244-279 192-227 (454)
224 3cf0_A Transitional endoplasmi 97.2 0.0001 3.5E-09 63.4 1.7 33 251-283 45-77 (301)
225 3auy_A DNA double-strand break 97.1 8.8E-05 3E-09 65.8 0.7 46 93-141 314-359 (371)
226 1mky_A Probable GTP-binding pr 97.1 0.00025 8.4E-09 64.4 3.5 24 257-280 182-205 (439)
227 1htw_A HI0065; nucleotide-bind 97.1 2.1E-05 7.2E-10 61.1 -3.2 54 1-62 46-101 (158)
228 2rcn_A Probable GTPase ENGC; Y 97.1 0.00018 6.1E-09 63.3 2.3 101 1-114 228-346 (358)
229 2qtf_A Protein HFLX, GTP-bindi 97.1 0.00027 9.1E-09 62.5 3.2 24 257-280 181-204 (364)
230 1ni3_A YCHF GTPase, YCHF GTP-b 97.1 5.9E-05 2E-09 67.3 -1.0 142 1-153 33-210 (392)
231 1gvn_B Zeta; postsegregational 97.1 0.00027 9.3E-09 60.4 3.2 24 254-277 32-55 (287)
232 3lxx_A GTPase IMAP family memb 97.1 0.00029 9.8E-09 58.3 3.2 25 257-281 31-55 (239)
233 2qag_A Septin-2, protein NEDD5 97.1 0.00016 5.6E-09 63.8 1.8 32 242-279 30-61 (361)
234 2ce7_A Cell division protein F 97.0 0.00013 4.3E-09 66.8 0.5 36 244-281 40-75 (476)
235 2yv5_A YJEQ protein; hydrolase 97.0 0.0001 3.6E-09 63.5 -0.2 56 1-60 178-245 (302)
236 2ius_A DNA translocase FTSK; n 97.0 0.00031 1E-08 64.7 2.9 31 247-277 159-189 (512)
237 2jeo_A Uridine-cytidine kinase 97.0 0.00028 9.6E-09 58.7 2.3 104 1-126 38-165 (245)
238 1v5w_A DMC1, meiotic recombina 97.0 0.00038 1.3E-08 61.0 3.2 28 251-278 118-145 (343)
239 1nij_A Hypothetical protein YJ 96.9 1E-06 3.5E-11 76.7 -13.5 124 1-127 17-190 (318)
240 3llm_A ATP-dependent RNA helic 96.9 0.00033 1.1E-08 57.9 2.3 25 252-276 73-97 (235)
241 3kl4_A SRP54, signal recogniti 96.9 0.00024 8.2E-09 64.1 1.4 27 254-280 96-122 (433)
242 1ypw_A Transitional endoplasmi 96.9 0.00014 4.7E-09 71.0 -0.3 36 248-283 504-539 (806)
243 2i3b_A HCR-ntpase, human cance 96.9 5.5E-05 1.9E-09 60.6 -2.7 40 1-45 14-54 (189)
244 2z43_A DNA repair and recombin 96.9 0.00069 2.4E-08 58.8 3.9 27 251-277 103-129 (324)
245 4ag6_A VIRB4 ATPase, type IV s 96.8 0.00067 2.3E-08 60.4 3.2 26 254-279 34-59 (392)
246 2ged_A SR-beta, signal recogni 96.7 0.00082 2.8E-08 53.1 3.0 23 257-279 50-72 (193)
247 3bos_A Putative DNA replicatio 96.7 0.0011 3.7E-08 54.2 3.8 26 254-279 51-76 (242)
248 3b9p_A CG5977-PA, isoform A; A 96.7 0.0008 2.7E-08 57.3 2.9 28 254-281 53-80 (297)
249 1wb9_A DNA mismatch repair pro 96.7 9.3E-05 3.2E-09 71.9 -3.3 121 1-150 620-752 (800)
250 2qby_A CDC6 homolog 1, cell di 96.6 0.00085 2.9E-08 59.0 2.9 27 253-279 43-69 (386)
251 2qmh_A HPR kinase/phosphorylas 96.6 0.0015 5.2E-08 52.3 4.1 34 244-278 24-57 (205)
252 1ko7_A HPR kinase/phosphatase; 96.6 0.0015 5.1E-08 56.3 4.3 34 243-277 133-166 (314)
253 1fnn_A CDC6P, cell division co 96.6 0.0011 3.8E-08 58.4 3.5 27 254-280 41-69 (389)
254 4fcw_A Chaperone protein CLPB; 96.6 0.0011 3.6E-08 56.9 3.3 26 255-280 47-72 (311)
255 2e87_A Hypothetical protein PH 96.6 0.00093 3.2E-08 58.8 2.9 25 255-279 167-191 (357)
256 2i1q_A DNA repair and recombin 96.6 0.0013 4.6E-08 56.8 3.6 27 251-277 94-120 (322)
257 2w58_A DNAI, primosome compone 96.5 0.0014 4.9E-08 52.4 3.5 24 256-279 55-78 (202)
258 1t9h_A YLOQ, probable GTPase E 96.5 0.00066 2.2E-08 58.5 1.4 53 1-57 186-247 (307)
259 3thx_A DNA mismatch repair pro 96.5 0.0012 4.1E-08 65.1 3.4 60 93-154 750-811 (934)
260 1u94_A RECA protein, recombina 96.5 0.0018 6.1E-08 57.0 4.1 27 251-277 59-85 (356)
261 3a8t_A Adenylate isopentenyltr 96.5 0.0016 5.3E-08 56.7 3.5 28 253-280 38-65 (339)
262 2f6r_A COA synthase, bifunctio 96.5 0.0015 5E-08 55.6 3.2 22 256-277 76-97 (281)
263 3bh0_A DNAB-like replicative h 96.5 0.0018 6.1E-08 56.0 3.7 33 244-276 57-89 (315)
264 2yhs_A FTSY, cell division pro 96.4 0.0007 2.4E-08 61.9 0.9 119 1-124 306-447 (503)
265 2zts_A Putative uncharacterize 96.4 0.0026 8.8E-08 52.4 4.1 26 251-276 26-51 (251)
266 4a1f_A DNAB helicase, replicat 96.3 0.0021 7.2E-08 56.0 3.5 34 244-277 35-68 (338)
267 1jbk_A CLPB protein; beta barr 96.3 0.0025 8.6E-08 49.8 3.7 26 253-278 41-66 (195)
268 1n0w_A DNA repair protein RAD5 96.3 0.00061 2.1E-08 56.1 -0.1 109 1-127 37-175 (243)
269 3tlx_A Adenylate kinase 2; str 96.3 0.0024 8.2E-08 53.0 3.5 22 255-276 29-50 (243)
270 3h4m_A Proteasome-activating n 96.3 0.0018 6E-08 54.8 2.7 31 252-282 48-78 (285)
271 3zvl_A Bifunctional polynucleo 96.3 0.0023 7.8E-08 57.6 3.5 26 252-277 255-280 (416)
272 2wsm_A Hydrogenase expression/ 96.2 0.0023 7.9E-08 51.8 3.1 22 257-278 32-53 (221)
273 3lda_A DNA repair protein RAD5 96.2 0.0015 5.1E-08 58.4 1.8 24 103-126 304-328 (400)
274 3n70_A Transport activator; si 96.2 0.0029 9.9E-08 47.9 3.1 26 254-279 23-48 (145)
275 1l8q_A Chromosomal replication 96.2 0.0023 7.7E-08 55.3 2.7 25 255-279 37-61 (324)
276 1njg_A DNA polymerase III subu 96.1 0.0036 1.2E-07 50.8 3.6 23 257-279 47-69 (250)
277 3umf_A Adenylate kinase; rossm 96.1 0.0025 8.5E-08 52.0 2.5 27 251-277 25-51 (217)
278 2p65_A Hypothetical protein PF 96.1 0.0029 1E-07 49.3 2.9 26 254-279 42-67 (187)
279 2v3c_C SRP54, signal recogniti 96.0 0.0018 6E-08 58.5 1.5 24 256-279 100-123 (432)
280 2ewv_A Twitching motility prot 96.0 0.0026 8.9E-08 56.3 2.6 109 1-142 149-258 (372)
281 2bbw_A Adenylate kinase 4, AK4 96.0 0.00018 6.2E-09 59.8 -4.7 106 1-115 40-199 (246)
282 4dhe_A Probable GTP-binding pr 96.0 0.0017 5.6E-08 52.7 1.2 24 257-280 31-54 (223)
283 1sxj_D Activator 1 41 kDa subu 96.0 0.0013 4.4E-08 57.3 0.6 35 245-279 46-82 (353)
284 2q6t_A DNAB replication FORK h 96.0 0.0036 1.2E-07 56.7 3.4 33 245-277 190-222 (444)
285 2j1l_A RHO-related GTP-binding 96.0 0.0037 1.3E-07 50.4 3.1 22 257-278 36-57 (214)
286 2g3y_A GTP-binding protein GEM 96.0 0.004 1.4E-07 50.4 3.3 22 257-278 39-60 (211)
287 2qu8_A Putative nucleolar GTP- 96.0 0.0035 1.2E-07 51.2 2.9 22 257-278 31-52 (228)
288 1sky_E F1-ATPase, F1-ATP synth 96.0 0.004 1.4E-07 56.5 3.4 31 250-280 146-176 (473)
289 2hf9_A Probable hydrogenase ni 95.9 0.0041 1.4E-07 50.4 3.0 22 257-278 40-61 (226)
290 2z4s_A Chromosomal replication 95.9 0.0035 1.2E-07 56.8 2.8 25 255-279 130-154 (440)
291 2b6h_A ADP-ribosylation factor 95.8 0.0038 1.3E-07 49.5 2.5 21 257-277 31-51 (192)
292 1xp8_A RECA protein, recombina 95.8 0.0058 2E-07 53.9 3.9 26 251-276 70-95 (366)
293 2qz4_A Paraplegin; AAA+, SPG7, 95.8 0.0038 1.3E-07 51.8 2.6 28 253-280 37-64 (262)
294 3dm5_A SRP54, signal recogniti 95.8 0.005 1.7E-07 55.6 3.4 25 254-278 99-123 (443)
295 3def_A T7I23.11 protein; chlor 95.8 0.0048 1.6E-07 51.7 3.1 23 257-279 38-60 (262)
296 3cnl_A YLQF, putative uncharac 95.8 0.0047 1.6E-07 51.9 3.0 25 256-280 100-124 (262)
297 2r62_A Cell division protease 95.8 0.0011 3.7E-08 55.6 -1.0 28 251-280 42-69 (268)
298 1h65_A Chloroplast outer envel 95.7 0.005 1.7E-07 51.7 3.0 23 257-279 41-63 (270)
299 2hup_A RAS-related protein RAB 95.7 0.0055 1.9E-07 48.9 2.8 22 257-278 31-52 (201)
300 1g41_A Heat shock protein HSLU 95.6 0.005 1.7E-07 55.6 2.6 27 257-283 52-78 (444)
301 4gzl_A RAS-related C3 botulinu 95.6 0.0058 2E-07 48.8 2.8 21 257-277 32-52 (204)
302 2vhj_A Ntpase P4, P4; non- hyd 95.6 0.007 2.4E-07 52.3 3.3 27 250-276 118-144 (331)
303 3hws_A ATP-dependent CLP prote 95.6 0.0056 1.9E-07 53.8 2.7 28 254-281 50-77 (363)
304 2qag_C Septin-7; cell cycle, c 95.6 0.0024 8.2E-08 57.4 0.3 114 1-127 44-178 (418)
305 1ewq_A DNA mismatch repair pro 95.4 0.00025 8.7E-09 68.5 -6.9 97 1-127 589-699 (765)
306 2xau_A PRE-mRNA-splicing facto 95.4 0.0052 1.8E-07 59.7 2.2 26 252-277 106-131 (773)
307 3p32_A Probable GTPase RV1496/ 95.4 0.0082 2.8E-07 52.7 3.3 24 255-278 79-102 (355)
308 1cr0_A DNA primase/helicase; R 95.4 0.0061 2.1E-07 51.9 2.4 53 93-145 156-237 (296)
309 3syl_A Protein CBBX; photosynt 95.4 0.01 3.4E-07 50.6 3.7 26 254-279 66-91 (309)
310 2w0m_A SSO2452; RECA, SSPF, un 95.3 0.0039 1.3E-07 50.6 0.8 51 93-143 132-192 (235)
311 2chg_A Replication factor C sm 95.3 0.0096 3.3E-07 47.5 3.1 22 257-278 40-61 (226)
312 2v1u_A Cell division control p 95.2 0.0085 2.9E-07 52.5 2.7 27 253-279 42-68 (387)
313 3co5_A Putative two-component 95.2 0.0043 1.5E-07 46.8 0.6 26 254-279 26-51 (143)
314 3d8b_A Fidgetin-like protein 1 95.2 0.0096 3.3E-07 52.2 2.9 28 254-281 116-143 (357)
315 1sxj_E Activator 1 40 kDa subu 95.2 0.0049 1.7E-07 53.7 0.9 114 1-130 49-178 (354)
316 3bgw_A DNAB-like replicative h 95.1 0.012 4E-07 53.4 3.4 32 245-276 187-218 (444)
317 1knx_A Probable HPR(Ser) kinas 95.1 0.019 6.5E-07 49.3 4.5 33 243-276 136-168 (312)
318 1xwi_A SKD1 protein; VPS4B, AA 95.1 0.0099 3.4E-07 51.4 2.8 26 254-279 44-69 (322)
319 1d2n_A N-ethylmaleimide-sensit 95.1 0.012 4.2E-07 49.3 3.1 24 255-278 64-87 (272)
320 3t15_A Ribulose bisphosphate c 95.0 0.011 3.9E-07 50.3 2.9 26 256-281 37-62 (293)
321 2r44_A Uncharacterized protein 95.0 0.0075 2.6E-07 52.1 1.7 30 252-281 43-72 (331)
322 2j37_W Signal recognition part 95.0 0.013 4.3E-07 53.9 3.2 22 255-276 101-122 (504)
323 2qgz_A Helicase loader, putati 95.0 0.016 5.5E-07 49.8 3.7 23 255-277 152-174 (308)
324 1ofh_A ATP-dependent HSL prote 95.0 0.014 4.7E-07 49.6 3.3 26 255-280 50-75 (310)
325 3pvs_A Replication-associated 95.0 0.01 3.4E-07 53.9 2.5 26 257-282 52-77 (447)
326 1g8f_A Sulfate adenylyltransfe 94.9 0.012 4.2E-07 54.1 3.0 27 253-279 393-419 (511)
327 1x6v_B Bifunctional 3'-phospho 94.9 0.015 5E-07 54.8 3.5 25 254-278 51-75 (630)
328 3eie_A Vacuolar protein sortin 94.9 0.011 3.7E-07 51.0 2.4 29 254-282 50-78 (322)
329 3pfi_A Holliday junction ATP-d 94.9 0.011 3.9E-07 51.0 2.6 25 257-281 57-81 (338)
330 3uk6_A RUVB-like 2; hexameric 94.9 0.016 5.6E-07 50.6 3.6 27 254-280 69-95 (368)
331 1um8_A ATP-dependent CLP prote 94.9 0.012 4.2E-07 51.8 2.7 27 255-281 72-98 (376)
332 2qpt_A EH domain-containing pr 94.8 0.014 4.8E-07 54.3 3.0 23 257-279 67-89 (550)
333 3th5_A RAS-related C3 botulinu 93.8 0.005 1.7E-07 49.1 0.0 21 257-277 32-52 (204)
334 2qby_B CDC6 homolog 3, cell di 94.8 0.019 6.4E-07 50.4 3.7 24 255-278 45-68 (384)
335 1zcb_A G alpha I/13; GTP-bindi 94.8 0.013 4.5E-07 51.5 2.6 30 255-284 33-62 (362)
336 1puj_A YLQF, conserved hypothe 94.7 0.016 5.5E-07 49.1 3.0 24 257-280 122-145 (282)
337 1m8p_A Sulfate adenylyltransfe 94.7 0.017 5.8E-07 54.0 3.4 26 253-278 394-419 (573)
338 2qen_A Walker-type ATPase; unk 94.7 0.021 7E-07 49.3 3.7 23 255-277 31-53 (350)
339 3geh_A MNME, tRNA modification 94.7 0.015 5.1E-07 52.9 2.8 22 257-278 226-247 (462)
340 1q57_A DNA primase/helicase; d 94.7 0.013 4.5E-07 53.8 2.5 26 251-276 238-263 (503)
341 2bjv_A PSP operon transcriptio 94.7 0.018 6.2E-07 48.0 3.1 26 255-280 29-54 (265)
342 2oap_1 GSPE-2, type II secreti 94.6 0.00053 1.8E-08 63.3 -7.0 124 1-128 273-452 (511)
343 1tue_A Replication protein E1; 94.6 0.018 6E-07 46.4 2.7 28 252-279 55-82 (212)
344 2qag_B Septin-6, protein NEDD5 94.5 0.00059 2E-08 61.3 -6.7 53 1-62 55-108 (427)
345 2axn_A 6-phosphofructo-2-kinas 94.5 0.022 7.4E-07 52.7 3.6 24 255-278 35-58 (520)
346 2qp9_X Vacuolar protein sortin 94.5 0.013 4.4E-07 51.4 1.9 28 254-281 83-110 (355)
347 3l0i_B RAS-related protein RAB 94.5 0.0033 1.1E-07 50.0 -1.8 21 257-277 35-55 (199)
348 2x2e_A Dynamin-1; nitration, h 94.5 0.013 4.5E-07 51.3 1.9 24 257-280 33-56 (353)
349 1lnz_A SPO0B-associated GTP-bi 94.4 0.022 7.6E-07 49.7 3.3 33 246-278 149-181 (342)
350 2xxa_A Signal recognition part 94.3 0.024 8.3E-07 51.1 3.4 24 254-277 99-122 (433)
351 1bif_A 6-phosphofructo-2-kinas 94.3 0.025 8.7E-07 51.5 3.4 24 255-278 39-62 (469)
352 2iut_A DNA translocase FTSK; n 94.3 0.023 8E-07 52.7 3.2 29 248-276 207-235 (574)
353 2gks_A Bifunctional SAT/APS ki 94.3 0.026 8.9E-07 52.5 3.5 25 253-277 370-394 (546)
354 3ec1_A YQEH GTPase; atnos1, at 94.2 0.024 8.1E-07 50.0 3.1 25 254-278 161-185 (369)
355 2o8b_B DNA mismatch repair pro 94.2 0.025 8.7E-07 56.4 3.4 59 93-153 877-939 (1022)
356 4b4t_K 26S protease regulatory 94.1 0.02 6.7E-07 51.5 2.3 27 257-283 208-234 (428)
357 3nbx_X ATPase RAVA; AAA+ ATPas 94.1 0.024 8.1E-07 52.1 2.9 36 245-280 31-66 (500)
358 3pxg_A Negative regulator of g 94.1 0.029 9.8E-07 51.1 3.4 26 254-279 200-225 (468)
359 1hqc_A RUVB; extended AAA-ATPa 94.1 0.019 6.6E-07 49.1 2.1 24 255-278 38-61 (324)
360 1in4_A RUVB, holliday junction 94.1 0.0018 6.2E-08 56.4 -4.5 114 1-116 64-197 (334)
361 3vfd_A Spastin; ATPase, microt 94.1 0.026 9E-07 50.0 3.0 28 254-281 147-174 (389)
362 4b4t_J 26S protease regulatory 94.1 0.018 6.1E-07 51.3 1.8 33 249-283 178-210 (405)
363 2zan_A Vacuolar protein sortin 94.0 0.028 9.4E-07 50.9 3.0 26 254-279 166-191 (444)
364 2hjg_A GTP-binding protein ENG 94.0 0.029 1E-06 50.5 3.2 24 257-280 177-200 (436)
365 3l0o_A Transcription terminati 93.9 0.035 1.2E-06 49.1 3.5 28 250-277 170-197 (427)
366 3h2y_A GTPase family protein; 93.9 0.025 8.7E-07 49.8 2.6 25 254-278 159-183 (368)
367 4b4t_L 26S protease subunit RP 93.9 0.023 7.9E-07 51.2 2.4 29 255-283 215-243 (437)
368 1p9r_A General secretion pathw 93.9 0.0025 8.6E-08 57.3 -4.0 91 1-92 180-300 (418)
369 3cmw_A Protein RECA, recombina 93.9 0.038 1.3E-06 57.6 4.1 27 251-277 728-754 (1706)
370 2j69_A Bacterial dynamin-like 93.9 0.031 1.1E-06 53.5 3.2 25 255-279 69-93 (695)
371 3o47_A ADP-ribosylation factor 93.9 0.022 7.4E-07 49.4 2.0 21 257-277 167-187 (329)
372 4b4t_M 26S protease regulatory 93.8 0.024 8.4E-07 51.0 2.4 29 255-283 215-243 (434)
373 3dpu_A RAB family protein; roc 93.8 0.032 1.1E-06 51.7 3.2 22 257-278 43-64 (535)
374 1f5n_A Interferon-induced guan 93.8 0.028 9.4E-07 52.7 2.7 23 257-279 40-62 (592)
375 3gee_A MNME, tRNA modification 93.8 0.021 7.2E-07 52.1 1.9 22 257-278 235-256 (476)
376 1jr3_A DNA polymerase III subu 93.8 0.037 1.3E-06 48.3 3.4 23 257-279 40-62 (373)
377 2fna_A Conserved hypothetical 93.7 0.037 1.3E-06 47.7 3.2 22 256-277 31-52 (357)
378 1w5s_A Origin recognition comp 93.7 0.031 1E-06 49.5 2.7 24 254-277 49-74 (412)
379 3hu3_A Transitional endoplasmi 93.6 0.033 1.1E-06 51.1 2.8 29 252-280 235-263 (489)
380 1zp6_A Hypothetical protein AT 93.6 0.0038 1.3E-07 49.3 -3.1 55 1-62 22-77 (191)
381 1sxj_A Activator 1 95 kDa subu 93.5 0.046 1.6E-06 50.4 3.6 25 255-279 77-101 (516)
382 2c9o_A RUVB-like 1; hexameric 93.5 0.035 1.2E-06 50.3 2.8 27 254-280 62-88 (456)
383 1iqp_A RFCS; clamp loader, ext 93.5 0.047 1.6E-06 46.6 3.4 22 257-278 48-69 (327)
384 2wkq_A NPH1-1, RAS-related C3 93.4 0.039 1.3E-06 47.2 2.8 22 256-277 156-177 (332)
385 4b4t_I 26S protease regulatory 93.4 0.027 9.4E-07 50.4 1.8 28 256-283 217-244 (437)
386 3e1s_A Exodeoxyribonuclease V, 93.3 0.054 1.9E-06 50.6 3.8 25 254-278 203-227 (574)
387 3q5d_A Atlastin-1; G protein, 93.3 0.044 1.5E-06 49.5 3.0 22 257-278 69-90 (447)
388 4b4t_H 26S protease regulatory 93.2 0.029 1E-06 50.7 1.8 31 253-283 241-271 (467)
389 3ec2_A DNA replication protein 93.2 0.12 4.2E-06 40.0 5.2 37 93-129 109-146 (180)
390 2a5y_B CED-4; apoptosis; HET: 93.1 0.053 1.8E-06 50.4 3.4 23 255-277 152-174 (549)
391 1g8p_A Magnesium-chelatase 38 93.1 0.029 1E-06 48.5 1.5 24 257-280 47-70 (350)
392 2chq_A Replication factor C sm 92.9 0.058 2E-06 45.8 3.1 22 257-278 40-61 (319)
393 1sxj_B Activator 1 37 kDa subu 92.8 0.06 2.1E-06 45.8 3.1 21 258-278 45-65 (323)
394 1sq5_A Pantothenate kinase; P- 92.8 0.0082 2.8E-07 51.6 -2.4 59 1-64 93-156 (308)
395 1z6t_A APAF-1, apoptotic prote 92.8 0.064 2.2E-06 50.1 3.5 24 254-277 146-169 (591)
396 1e9r_A Conjugal transfer prote 92.8 0.051 1.7E-06 48.8 2.7 22 255-276 53-74 (437)
397 1of1_A Thymidine kinase; trans 92.7 0.041 1.4E-06 48.4 2.0 26 254-279 48-73 (376)
398 1qvr_A CLPB protein; coiled co 92.6 0.046 1.6E-06 53.7 2.3 25 255-279 191-215 (854)
399 3cf2_A TER ATPase, transitiona 92.5 0.067 2.3E-06 51.9 3.3 31 253-283 236-266 (806)
400 4a9a_A Ribosome-interacting GT 92.5 0.056 1.9E-06 47.7 2.5 22 257-278 74-95 (376)
401 2ck3_D ATP synthase subunit be 92.5 0.078 2.7E-06 48.1 3.4 28 250-277 148-175 (482)
402 2x8a_A Nuclear valosin-contain 92.4 0.0011 3.8E-08 56.1 -8.4 85 1-92 57-144 (274)
403 1xzp_A Probable tRNA modificat 92.3 0.022 7.5E-07 52.1 -0.3 25 255-279 243-267 (482)
404 3cmw_A Protein RECA, recombina 92.3 0.093 3.2E-06 54.8 4.1 26 251-276 379-404 (1706)
405 1r6b_X CLPA protein; AAA+, N-t 92.1 0.087 3E-06 50.9 3.6 27 253-279 205-231 (758)
406 3lvq_E ARF-GAP with SH3 domain 92.1 0.076 2.6E-06 48.6 3.0 23 257-279 324-346 (497)
407 3izq_1 HBS1P, elongation facto 92.0 0.082 2.8E-06 49.8 3.2 22 257-278 169-190 (611)
408 3cmu_A Protein RECA, recombina 92.0 0.1 3.6E-06 55.2 4.2 27 251-277 379-405 (2050)
409 3thx_B DNA mismatch repair pro 91.9 0.11 3.6E-06 51.3 3.9 53 93-147 761-816 (918)
410 4dcu_A GTP-binding protein ENG 91.8 0.095 3.3E-06 47.5 3.2 24 256-279 196-219 (456)
411 1j3b_A ATP-dependent phosphoen 91.7 0.073 2.5E-06 48.8 2.3 21 253-273 223-243 (529)
412 3tr0_A Guanylate kinase, GMP k 91.7 0.003 1E-07 50.5 -6.2 57 1-62 20-77 (205)
413 3upu_A ATP-dependent DNA helic 91.6 0.095 3.2E-06 47.5 3.0 21 257-277 47-67 (459)
414 3cmu_A Protein RECA, recombina 91.5 0.13 4.3E-06 54.6 4.2 26 251-276 1423-1448(2050)
415 1ii2_A Phosphoenolpyruvate car 91.5 0.1 3.5E-06 47.9 3.0 21 253-273 211-231 (524)
416 2olr_A Phosphoenolpyruvate car 91.4 0.1 3.4E-06 47.9 2.9 19 254-272 240-258 (540)
417 3te6_A Regulatory protein SIR3 91.2 0.12 3.9E-06 44.6 3.0 26 254-279 44-69 (318)
418 2cvh_A DNA repair and recombin 91.2 0.16 5.5E-06 40.5 3.8 51 93-143 114-185 (220)
419 1qvr_A CLPB protein; coiled co 91.1 0.11 3.6E-06 51.1 2.9 24 256-279 589-612 (854)
420 3f9v_A Minichromosome maintena 91.0 0.081 2.8E-06 49.7 2.0 29 252-280 324-352 (595)
421 3pxi_A Negative regulator of g 90.9 0.13 4.4E-06 49.7 3.4 27 253-279 199-225 (758)
422 1ytm_A Phosphoenolpyruvate car 90.8 0.13 4.3E-06 47.3 3.0 20 253-272 232-252 (532)
423 3p26_A Elongation factor 1 alp 90.7 0.099 3.4E-06 47.8 2.2 22 257-278 35-56 (483)
424 2c61_A A-type ATP synthase non 90.5 0.078 2.7E-06 48.0 1.3 31 250-280 147-177 (469)
425 3end_A Light-independent proto 90.5 0.17 6E-06 42.9 3.5 27 252-278 38-64 (307)
426 3gqb_A V-type ATP synthase alp 90.4 0.15 5E-06 47.1 3.0 28 250-277 216-243 (578)
427 3u61_B DNA polymerase accessor 90.4 0.14 4.8E-06 43.8 2.8 23 257-279 50-72 (324)
428 3vr4_A V-type sodium ATPase ca 90.3 0.16 5.5E-06 47.0 3.1 28 250-277 227-254 (600)
429 1fx0_B ATP synthase beta chain 90.2 0.12 4.1E-06 47.1 2.3 28 250-277 160-187 (498)
430 1qhl_A Protein (cell division 90.1 0.022 7.6E-07 46.6 -2.4 43 1-44 40-91 (227)
431 3pxi_A Negative regulator of g 90.0 0.18 6.1E-06 48.8 3.4 23 257-279 523-545 (758)
432 3qq5_A Small GTP-binding prote 90.0 0.032 1.1E-06 50.1 -1.7 22 257-278 36-57 (423)
433 1w36_D RECD, exodeoxyribonucle 89.9 0.2 6.8E-06 47.2 3.6 24 254-277 163-186 (608)
434 3mfy_A V-type ATP synthase alp 89.8 0.13 4.5E-06 47.4 2.2 28 250-277 222-249 (588)
435 1r6b_X CLPA protein; AAA+, N-t 89.6 0.19 6.6E-06 48.4 3.4 23 257-279 490-512 (758)
436 1vt4_I APAF-1 related killer D 89.2 0.18 6.2E-06 50.3 2.8 22 255-276 150-171 (1221)
437 3mca_A HBS1, elongation factor 89.2 0.2 6.7E-06 47.0 3.0 21 257-277 179-199 (592)
438 1iy2_A ATP-dependent metallopr 89.1 0.0039 1.3E-07 52.6 -8.0 57 1-60 86-144 (278)
439 4ido_A Atlastin-1; GTPase, GTP 89.0 0.17 5.7E-06 45.7 2.2 23 256-278 68-90 (457)
440 2f1r_A Molybdopterin-guanine d 89.0 0.021 7E-07 44.6 -3.3 48 1-48 15-73 (171)
441 1udx_A The GTP-binding protein 89.0 0.03 1E-06 50.2 -2.7 43 95-138 277-320 (416)
442 3vr4_D V-type sodium ATPase su 88.6 0.13 4.6E-06 46.3 1.3 30 250-279 146-175 (465)
443 3gqb_B V-type ATP synthase bet 88.5 0.11 3.9E-06 46.7 0.8 30 250-279 142-171 (464)
444 1u0j_A DNA replication protein 88.5 0.31 1.1E-05 40.8 3.4 23 256-278 105-127 (267)
445 2r9v_A ATP synthase subunit al 88.4 0.21 7.1E-06 45.6 2.4 30 250-279 170-200 (515)
446 3zvr_A Dynamin-1; hydrolase, D 88.1 0.27 9.1E-06 47.4 3.0 23 257-279 53-75 (772)
447 3cf2_A TER ATPase, transitiona 87.9 0.22 7.5E-06 48.3 2.4 28 256-283 512-539 (806)
448 2qm8_A GTPase/ATPase; G protei 87.9 0.012 4.1E-07 51.3 -5.9 49 1-50 68-121 (337)
449 1r5b_A Eukaryotic peptide chai 87.0 0.24 8.2E-06 45.0 2.0 21 257-277 45-65 (467)
450 2qe7_A ATP synthase subunit al 86.8 0.24 8.2E-06 45.1 1.8 30 250-279 157-187 (502)
451 3vkw_A Replicase large subunit 86.4 0.3 1E-05 44.0 2.2 28 249-276 155-182 (446)
452 4akg_A Glutathione S-transfera 86.0 0.38 1.3E-05 52.7 3.1 23 256-278 924-946 (2695)
453 2ck3_A ATP synthase subunit al 86.0 0.28 9.6E-06 44.8 1.8 29 250-278 157-186 (510)
454 1fx0_A ATP synthase alpha chai 85.7 0.24 8.3E-06 45.2 1.3 31 250-280 158-189 (507)
455 1ixz_A ATP-dependent metallopr 85.7 0.012 4.2E-07 48.7 -6.8 88 1-92 62-152 (254)
456 1cip_A Protein (guanine nucleo 85.6 0.4 1.4E-05 41.8 2.6 27 257-283 34-60 (353)
457 3sfz_A APAF-1, apoptotic pepti 85.5 0.42 1.4E-05 48.3 3.1 24 255-278 147-170 (1249)
458 3fwy_A Light-independent proto 85.4 0.58 2E-05 40.1 3.5 28 249-276 42-69 (314)
459 3vqt_A RF-3, peptide chain rel 84.7 0.51 1.8E-05 43.7 3.0 20 256-275 32-51 (548)
460 3oaa_A ATP synthase subunit al 84.3 0.37 1.3E-05 43.9 1.8 29 250-278 157-186 (513)
461 3avx_A Elongation factor TS, e 83.9 0.52 1.8E-05 47.6 2.8 22 257-278 298-319 (1289)
462 4eun_A Thermoresistant glucoki 83.2 0.018 6E-07 46.0 -6.7 55 1-61 42-97 (200)
463 4akg_A Glutathione S-transfera 83.1 0.43 1.5E-05 52.3 2.0 28 251-278 1263-1291(2695)
464 3fkq_A NTRC-like two-domain pr 83.0 0.77 2.6E-05 40.2 3.3 25 253-277 141-166 (373)
465 2oze_A ORF delta'; para, walke 82.7 0.7 2.4E-05 38.8 2.8 26 254-279 33-61 (298)
466 1lkx_A Myosin IE heavy chain; 81.4 0.97 3.3E-05 43.1 3.5 24 253-276 92-115 (697)
467 2gk6_A Regulator of nonsense t 80.8 1.1 3.8E-05 42.2 3.7 22 255-276 195-216 (624)
468 3vkg_A Dynein heavy chain, cyt 80.7 0.78 2.7E-05 50.9 2.9 25 252-278 905-929 (3245)
469 1azs_C GS-alpha; complex (lyas 80.2 0.93 3.2E-05 40.2 2.8 20 257-276 42-61 (402)
470 2kjq_A DNAA-related protein; s 80.0 1.7 5.9E-05 32.5 3.9 35 93-128 92-127 (149)
471 2ius_A DNA translocase FTSK; n 79.9 0.13 4.4E-06 47.3 -2.9 24 104-127 316-343 (512)
472 4db1_A Myosin-7; S1DC, cardiac 79.3 1.2 4.1E-05 43.0 3.4 24 253-276 169-192 (783)
473 3b6e_A Interferon-induced heli 79.3 0.71 2.4E-05 36.4 1.6 23 254-276 47-69 (216)
474 1w9i_A Myosin II heavy chain; 79.3 1.3 4.3E-05 42.8 3.5 24 253-276 170-193 (770)
475 2fz4_A DNA repair protein RAD2 79.2 1.1 3.8E-05 36.4 2.8 23 254-276 107-129 (237)
476 2v26_A Myosin VI; calmodulin-b 79.1 1.2 4.2E-05 43.0 3.4 24 253-276 138-161 (784)
477 1w7j_A Myosin VA; motor protei 78.4 1.3 4.5E-05 42.9 3.4 24 253-276 154-177 (795)
478 3cio_A ETK, tyrosine-protein k 78.1 1.6 5.4E-05 37.0 3.5 25 254-278 103-128 (299)
479 2gxq_A Heat resistant RNA depe 77.9 1.1 3.9E-05 35.0 2.4 18 254-271 37-54 (207)
480 2wjy_A Regulator of nonsense t 77.7 1.6 5.4E-05 42.4 3.8 22 255-276 371-392 (800)
481 1nlf_A Regulatory protein REPA 77.7 1.4 4.7E-05 36.7 3.0 35 93-127 142-182 (279)
482 2va8_A SSO2462, SKI2-type heli 77.7 1.1 3.7E-05 42.8 2.6 21 253-273 44-64 (715)
483 1lw7_A Transcriptional regulat 77.1 0.81 2.8E-05 39.9 1.4 56 93-152 295-351 (365)
484 3rc3_A ATP-dependent RNA helic 76.8 1.3 4.5E-05 42.1 2.9 18 254-271 154-171 (677)
485 4anj_A Unconventional myosin-V 76.1 1.6 5.5E-05 43.5 3.4 25 253-277 142-166 (1052)
486 3bfv_A CAPA1, CAPB2, membrane 75.9 2.3 7.7E-05 35.4 3.8 24 254-277 81-105 (271)
487 2ycu_A Non muscle myosin 2C, a 75.7 1.6 5.6E-05 43.4 3.3 24 253-276 144-167 (995)
488 1kk8_A Myosin heavy chain, str 75.5 1.5 5E-05 42.8 2.8 24 253-276 167-190 (837)
489 1g8x_A Myosin II heavy chain f 75.3 1.7 5.7E-05 43.4 3.2 24 253-276 170-193 (1010)
490 2pl3_A Probable ATP-dependent 74.0 2.2 7.5E-05 34.2 3.2 18 254-271 61-78 (236)
491 2dfs_A Myosin-5A; myosin-V, in 73.9 2 6.7E-05 43.2 3.4 24 253-276 154-177 (1080)
492 2xzl_A ATP-dependent helicase 73.8 2.2 7.6E-05 41.4 3.7 22 255-276 375-396 (802)
493 1qde_A EIF4A, translation init 73.0 1.8 6.1E-05 34.4 2.4 18 254-271 50-67 (224)
494 3iuy_A Probable ATP-dependent 72.6 1.8 6.3E-05 34.5 2.4 19 254-272 56-74 (228)
495 1vec_A ATP-dependent RNA helic 72.5 2.2 7.5E-05 33.3 2.8 18 254-271 39-56 (206)
496 1kjw_A Postsynaptic density pr 72.4 1.8 6.1E-05 36.7 2.3 30 251-283 101-130 (295)
497 2z0m_A 337AA long hypothetical 72.1 1.8 6.3E-05 36.4 2.4 21 254-274 30-50 (337)
498 3la6_A Tyrosine-protein kinase 71.9 2.8 9.4E-05 35.2 3.4 25 254-278 91-116 (286)
499 1ny5_A Transcriptional regulat 71.9 2.3 7.7E-05 37.4 3.0 23 256-278 161-183 (387)
500 3vkg_A Dynein heavy chain, cyt 71.8 1.1 3.9E-05 49.7 1.2 37 249-285 1298-1340(3245)
No 1
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.95 E-value=1.9e-28 Score=248.93 Aligned_cols=145 Identities=19% Similarity=0.281 Sum_probs=120.5
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
||||+++ +|..+. .+|+|++||+++...+...+++.+|||+|+|.+|.. ||+|+|.|+.+ ..+.+++.+.++
T Consensus 429 KSTl~~ll~g~~~~-~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~-ti~eNi~~g~~-----~~~~~~~~~~~~ 501 (1284)
T 3g5u_A 429 KSTTVQLMQRLYDP-LDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFAT-TIAENIRYGRE-----DVTMDEIEKAVK 501 (1284)
T ss_dssp HHHHHHHTTTSSCC-SEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSS-CHHHHHHHHCS-----SCCHHHHHHHHH
T ss_pred HHHHHHHHhCCCCC-CCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCc-cHHHHHhcCCC-----CCCHHHHHHHHH
Confidence 8999999 996544 799999999999877777888899999999988865 99999999864 234566554433
Q ss_pred -------hh-h-----------hhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEE
Q psy8953 80 -------LE-L-----------WNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVA 121 (286)
Q Consensus 80 -------l~-~-----------~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~ 121 (286)
+. . ...+|||||| |||+||+.+...+.+.|+.+.+ |+|+|+
T Consensus 502 ~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~-~~t~i~ 580 (1284)
T 3g5u_A 502 EANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKARE-GRTTIV 580 (1284)
T ss_dssp HTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHT-TSEEEE
T ss_pred HhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcC-CCEEEE
Confidence 11 1 1258899999 9999999999999999988754 899999
Q ss_pred EEcCCCHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 122 TIHTPSALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 122 ~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
++|+++. + ..+|+|++|++|++++.|+++++.
T Consensus 581 itH~l~~-i-~~~d~i~vl~~G~i~~~g~~~~l~ 612 (1284)
T 3g5u_A 581 IAHRLST-V-RNADVIAGFDGGVIVEQGNHDELM 612 (1284)
T ss_dssp ECSCHHH-H-TTCSEEEECSSSCCCCEECHHHHH
T ss_pred EecCHHH-H-HcCCEEEEEECCEEEEECCHHHHH
Confidence 9999864 4 459999999999999999998875
No 2
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.95 E-value=2e-28 Score=216.42 Aligned_cols=150 Identities=20% Similarity=0.261 Sum_probs=128.3
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhh---hcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACI---EQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKD 76 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~---~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~ 76 (286)
||||+++ +|+... .+|+|+++|+++...+. ..+++.+|||||++.+++.+||+|+++|++++ ...+.++.++
T Consensus 67 KSTLlr~i~GL~~p-~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~---~~~~~~~~~~ 142 (366)
T 3tui_C 67 KSTLIRCVNLLERP-TEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLEL---DNTPKDEVKR 142 (366)
T ss_dssp HHHHHHHHHTSSCC-SEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHH---SCCCHHHHHH
T ss_pred HHHHHHHHhcCCCC-CceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHh---cCCCHHHHHH
Confidence 8999999 997654 79999999999865332 23467899999999999999999999999985 3346777666
Q ss_pred HHh-------hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC-CCEEEEEEc
Q psy8953 77 QVS-------LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ-GRTVVATIH 124 (286)
Q Consensus 77 ~v~-------l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~-g~tii~~~h 124 (286)
++. |. ....+|||||| ||++||+.++.+++++|++++++ |+|||+++|
T Consensus 143 ~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTH 222 (366)
T 3tui_C 143 RVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITH 222 (366)
T ss_dssp HHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEES
T ss_pred HHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 665 22 45679999999 99999999999999999999875 999999999
Q ss_pred CCCHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 125 TPSALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 125 ~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
+++ .+..+||||++|++|++++.|++++++
T Consensus 223 dl~-~~~~~aDrv~vl~~G~iv~~g~~~ev~ 252 (366)
T 3tui_C 223 EMD-VVKRICDCVAVISNGELIEQDTVSEVF 252 (366)
T ss_dssp CHH-HHHHHCSEEEEEETTEEEECCBHHHHH
T ss_pred CHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 986 466889999999999999999998875
No 3
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.95 E-value=2.7e-28 Score=216.90 Aligned_cols=149 Identities=19% Similarity=0.218 Sum_probs=129.3
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
|||||++ +|+... .+|+|+++|+++... ...++.+|||||++.+||.+||+|+|+|++++ ...+.+++++++.
T Consensus 42 KSTLLr~iaGl~~p-~~G~I~i~G~~~~~~--~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~---~~~~~~~~~~~v~ 115 (381)
T 3rlf_A 42 KSTLLRMIAGLETI-TSGDLFIGEKRMNDT--PPAERGVGMVFQSYALYPHLSVAENMSFGLKL---AGAKKEVINQRVN 115 (381)
T ss_dssp HHHHHHHHHTSSCC-SEEEEEETTEECTTC--CGGGSCEEEECTTCCCCTTSCHHHHHTHHHHH---TTCCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCC-CCeEEEECCEECCCC--CHHHCCEEEEecCCcCCCCCCHHHHHHHHHHH---cCCCHHHHHHHHH
Confidence 8999999 997654 699999999998654 23357899999999999999999999999986 3456777776665
Q ss_pred -------h----h-hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC-CCEEEEEEcCCC
Q psy8953 80 -------L----E-LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ-GRTVVATIHTPS 127 (286)
Q Consensus 80 -------l----~-~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~-g~tii~~~h~~~ 127 (286)
| . ..+.+|||||| ||++||+..+.+++..|++++++ |+|+|+++|+.+
T Consensus 116 ~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ 195 (381)
T 3rlf_A 116 QVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV 195 (381)
T ss_dssp HHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH
T ss_pred HHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 2 2 56789999999 99999999999999999999876 999999999986
Q ss_pred HHHHHHhhhHhhhcCCeeecccChhcHHH
Q psy8953 128 ALLFEKFDSLYALAKGHCIYRGSISRLVP 156 (286)
Q Consensus 128 ~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 156 (286)
++..++|||++|++|+++..|+++++..
T Consensus 196 -ea~~~aDri~vl~~G~i~~~g~~~~l~~ 223 (381)
T 3rlf_A 196 -EAMTLADKIVVLDAGRVAQVGKPLELYH 223 (381)
T ss_dssp -HHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred -HHHHhCCEEEEEECCEEEEEeCHHHHHh
Confidence 4678999999999999999999998863
No 4
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.95 E-value=3.5e-28 Score=237.29 Aligned_cols=218 Identities=19% Similarity=0.289 Sum_probs=143.4
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCc-ccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDD-ALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQV 78 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~-~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v 78 (286)
|||||++ +| |+| +|.+... . ..++|++|++ .+++.+||.|++.+ ++ ... .+++.+.+
T Consensus 474 KSTLLk~Lag-------G~i--~g~~~~~----~--~~~~~v~q~~~~~~~~ltv~e~l~~--~~---~~~-~~~v~~~L 532 (986)
T 2iw3_A 474 KSTLMRAIAN-------GQV--DGFPTQE----E--CRTVYVEHDIDGTHSDTSVLDFVFE--SG---VGT-KEAIKDKL 532 (986)
T ss_dssp HHHHHHHHHH-------TCS--TTCCCTT----T--SCEEETTCCCCCCCTTSBHHHHHHT--TC---SSC-HHHHHHHH
T ss_pred HHHHHHHHhC-------CCc--CCCcccc----c--eeEEEEcccccccccCCcHHHHHHH--hh---cCH-HHHHHHHH
Confidence 8999999 84 222 4544321 1 2368999986 67899999999987 22 112 33333333
Q ss_pred h---h-----h-hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcCCCHHH
Q psy8953 79 S---L-----E-LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVATIHTPSALL 130 (286)
Q Consensus 79 ~---l-----~-~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~~~~~~ 130 (286)
+ + . ....+|||||| ||++||+.++..++++|++ .|.|||+++|+.+ .+
T Consensus 533 ~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~---~g~tvIivSHdl~-~l 608 (986)
T 2iw3_A 533 IEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT---CGITSITISHDSV-FL 608 (986)
T ss_dssp HHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH---SCSEEEEECSCHH-HH
T ss_pred HHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh---CCCEEEEEECCHH-HH
Confidence 2 3 1 34679999999 9999999999999999998 5899999999985 46
Q ss_pred HHHhhhHhhhcCCeee-cccChhcHHHHHHh----CCCCCCCCCCCCCccccccCCceeeeeccCchhhHHHHHHHHHHH
Q psy8953 131 FEKFDSLYALAKGHCI-YRGSISRLVPHLAS----LGLPCPAYHNPADFPNLAKQGRTVVATIHTPSALLFEKFDSLYAL 205 (286)
Q Consensus 131 ~~~~d~v~~l~~G~i~-~~g~~~~~~~~~~~----~g~~~p~~~~~~~~~~~~~~g~tii~~~h~p~~~l~~~~d~~~~l 205 (286)
...+|++++|++|+++ +.|+++++...... ..+..... ...++ .|...
T Consensus 609 ~~~adrii~L~~G~iv~~~G~~~e~~~~~~~~~~~~~l~~~~~--~~~~p--------------~~~~~----------- 661 (986)
T 2iw3_A 609 DNVCEYIINYEGLKLRKYKGNFTEFVKKCPAAKAYEELSNTDL--EFKFP--------------EPGYL----------- 661 (986)
T ss_dssp HHHCSEEEEEETTEEEEEESCHHHHHHHCGGGGGSSSTTTCCC--CCCCC--------------CCCCC-----------
T ss_pred HHhCCEEEEEECCeeecCCCCHHHHHhhhHHHHHHHhhhhhhh--hcccc--------------ccccc-----------
Confidence 6889999999999997 78998877542110 01000000 00000 00000
Q ss_pred hcCcceecCCccccccccccCCCCCCCCCCCCcccccccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 206 AKGHCIYRGSISRLVPHLASLGLPCPAYHNPADFLNKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 206 ~~g~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
.+. . ........++++.+. |.+ ..+.+|+++||+|++||+++|+|+||||||||+|+|+|+++++
T Consensus 662 -~~~-~---~~~~~mL~v~nLs~~---Y~g----~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~ 726 (986)
T 2iw3_A 662 -EGV-K---TKQKAIVKVTNMEFQ---YPG----TSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPT 726 (986)
T ss_dssp -TTC-C---STTSEEEEEEEEEEC---CTT----CSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCS
T ss_pred -ccc-c---cCCCceEEEEeeEEE---eCC----CCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 000 0 000111222333221 110 0145899999999999999999999999999999999999875
No 5
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.95 E-value=2.9e-28 Score=208.99 Aligned_cols=151 Identities=20% Similarity=0.255 Sum_probs=127.1
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecC--chhhhcccceeeEEecCcc-cCCCCCHHHHHHHHHhcCCCCCCCHHHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERK--SACIEQFLKLSCYIQQDDA-LRPKLTVTEAMMIASHLKLGFKVSTQEKKD 76 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~--~~~~~~~~~~~g~v~Q~~~-~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~ 76 (286)
||||+++ +|+.+. .+|+|+++|+++. ..+...+++.+|||||++. +++.+||+|+++|++++ ...+.++.++
T Consensus 47 KSTLl~~l~Gl~~p-~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~---~~~~~~~~~~ 122 (275)
T 3gfo_A 47 KSTLFQNFNGILKP-SSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVN---MKLPEDEIRK 122 (275)
T ss_dssp HHHHHHHHTTSSCC-SEEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHT---SCCCHHHHHH
T ss_pred HHHHHHHHHcCCCC-CCeEEEECCEECCcccccHHHHhCcEEEEEcCcccccccCcHHHHHHHHHHH---cCCCHHHHHH
Confidence 8999999 997654 7999999999984 2333456789999999984 66789999999999985 3456777666
Q ss_pred HHh-------hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHH-hCCCEEEEEEc
Q psy8953 77 QVS-------LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLA-KQGRTVVATIH 124 (286)
Q Consensus 77 ~v~-------l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~-~~g~tii~~~h 124 (286)
++. |. ...++|||||| ||++||+.++.+++++|++++ ++|+|||+++|
T Consensus 123 ~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtH 202 (275)
T 3gfo_A 123 RVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATH 202 (275)
T ss_dssp HHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEES
T ss_pred HHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEec
Confidence 665 22 45679999999 999999999999999999998 56999999999
Q ss_pred CCCHHHHHHhhhHhhhcCCeeecccChhcHHH
Q psy8953 125 TPSALLFEKFDSLYALAKGHCIYRGSISRLVP 156 (286)
Q Consensus 125 ~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 156 (286)
+++. +..+|||+++|++|++++.|+++++..
T Consensus 203 dl~~-~~~~~drv~~l~~G~i~~~g~~~~~~~ 233 (275)
T 3gfo_A 203 DIDI-VPLYCDNVFVMKEGRVILQGNPKEVFA 233 (275)
T ss_dssp CCSS-GGGGCSEEEEEETTEEEEEECHHHHTH
T ss_pred CHHH-HHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 9975 557899999999999999999988753
No 6
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.95 E-value=4.5e-28 Score=214.05 Aligned_cols=151 Identities=17% Similarity=0.185 Sum_probs=124.9
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCc--hhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKS--ACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQ 77 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~--~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~ 77 (286)
|||||++ +|+... .+|+|+++|+++.. ......++.+|||||++.+|+.+||+|+++|+++++ ..+.++.+++
T Consensus 43 KSTLLr~iaGl~~p-~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~---~~~~~~~~~~ 118 (359)
T 3fvq_A 43 KTTLLRCLAGFEQP-DSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNG---KGRTAQERQR 118 (359)
T ss_dssp HHHHHHHHHTSSCC-SEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTS---SCCSHHHHHH
T ss_pred HHHHHHHHhcCCCC-CCcEEEECCEECcccccccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHc---CCChHHHHHH
Confidence 8999999 997654 69999999999822 111334678999999999999999999999998742 3345555555
Q ss_pred Hh-------hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHh-CCCEEEEEEcC
Q psy8953 78 VS-------LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAK-QGRTVVATIHT 125 (286)
Q Consensus 78 v~-------l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~-~g~tii~~~h~ 125 (286)
+. |. ...++|||||| ||++||+..+.+++..|.++.+ .|+|+|+++|+
T Consensus 119 v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd 198 (359)
T 3fvq_A 119 IEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHD 198 (359)
T ss_dssp HHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred HHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 54 22 56789999999 9999999999999998888865 59999999999
Q ss_pred CCHHHHHHhhhHhhhcCCeeecccChhcHHH
Q psy8953 126 PSALLFEKFDSLYALAKGHCIYRGSISRLVP 156 (286)
Q Consensus 126 ~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 156 (286)
.+ ++..++|||++|++|+++..|+++++..
T Consensus 199 ~~-ea~~~aDri~vl~~G~i~~~g~~~el~~ 228 (359)
T 3fvq_A 199 RE-EALQYADRIAVMKQGRILQTASPHELYR 228 (359)
T ss_dssp HH-HHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HH-HHHHHCCEEEEEECCEEEEEeCHHHHHh
Confidence 86 4668899999999999999999998763
No 7
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.94 E-value=2.9e-28 Score=233.91 Aligned_cols=207 Identities=19% Similarity=0.212 Sum_probs=117.7
Q ss_pred ceeEEEECCeecCchhhhcccceeeEEecCcc-------------------cCCCCCHHHHHHHHHhcCCCCC------C
Q psy8953 15 SSGKILVNGQERKSACIEQFLKLSCYIQQDDA-------------------LRPKLTVTEAMMIASHLKLGFK------V 69 (286)
Q Consensus 15 ~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~-------------------~~~~~tV~e~l~f~~~~~~~~~------~ 69 (286)
..|.|.++|.+... ..++.+|||+|.+. .++.+||+|++.|...+..... .
T Consensus 99 ~~~~i~~~~~~~~~----~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~ 174 (670)
T 3ux8_A 99 LSPAISIDQKTTSR----NPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARL 174 (670)
T ss_dssp CCCEEEESSCC---------CCBHHHHTTCC-------------------------CC----------------------
T ss_pred cccceEecCchhhc----cchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHH
Confidence 46788898877643 23455666666543 2467899999998643322110 0
Q ss_pred CHHHHHHHHh------h-----h-hhhcccCCccc---------------------cCCCcchHHHHHHHHHHHHHHhCC
Q psy8953 70 STQEKKDQVS------L-----E-LWNNFCKKKKK---------------------KKRGLDSSSCSQCVSLLANLAKQG 116 (286)
Q Consensus 70 ~~~~~~~~v~------l-----~-~~~~~~gG~kq---------------------ptsgLD~~~~~~~~~~l~~l~~~g 116 (286)
..+++.+++. | . ...++|||||| ||++||+.++.+++++|++++++|
T Consensus 175 ~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g 254 (670)
T 3ux8_A 175 ILREIRDRLGFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLG 254 (670)
T ss_dssp ----CHHHHHHHHHTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcC
Confidence 0111112221 1 2 45679999999 999999999999999999998889
Q ss_pred CEEEEEEcCCCHHHHHHhhhHhhh------cCCeeecccChhcHHHHHHhCCCCCCCCCCCCCccccccCCceeeeeccC
Q psy8953 117 RTVVATIHTPSALLFEKFDSLYAL------AKGHCIYRGSISRLVPHLASLGLPCPAYHNPADFPNLAKQGRTVVATIHT 190 (286)
Q Consensus 117 ~tii~~~h~~~~~~~~~~d~v~~l------~~G~i~~~g~~~~~~~~~~~~g~~~p~~~~~~~~~~~~~~g~tii~~~h~ 190 (286)
.|||+++|+++ .+ ..+|++++| ++|++++.|+++++... + ....
T Consensus 255 ~tvi~vtHd~~-~~-~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~~~--------~-----~~~~--------------- 304 (670)
T 3ux8_A 255 NTLIVVEHDED-TM-LAADYLIDIGPGAGIHGGEVVAAGTPEEVMND--------P-----NSLT--------------- 304 (670)
T ss_dssp CEEEEECCCHH-HH-HHCSEEEEECSSSGGGCCSEEEEECHHHHHTC--------T-----TCHH---------------
T ss_pred CEEEEEeCCHH-HH-hhCCEEEEecccccccCCEEEEecCHHHHhcC--------c-----hhHH---------------
Confidence 99999999985 34 569999999 89999999999876531 0 0000
Q ss_pred chhhHHHHHHHHHHHhcCcceecCCccccccccccCCCCCCCCCCCCcccccccceeeeeEEeCCCEEEEEcCCCCcHHH
Q psy8953 191 PSALLFEKFDSLYALAKGHCIYRGSISRLVPHLASLGLPCPAYHNPADFLNKEILHGISGEFKAGQLTAIMGPSGAGKST 270 (286)
Q Consensus 191 p~~~l~~~~d~~~~l~~g~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~il~~~~l~i~~Ge~~aivG~NGsGKST 270 (286)
.. .+. +.......... ....... ..+. .....+|+|+||+|++||++||+|||||||||
T Consensus 305 ---------~~--~~~-~~~~~~~~~~~--~~~~~~~---~~~~----~~~~~~L~~vsl~I~~Ge~vaIiGpnGsGKST 363 (670)
T 3ux8_A 305 ---------GQ--YLS-GKKFIPIPAER--RRPDGRW---LEVV----GAREHNLKNVSVKIPLGTFVAVTGVSGSGKST 363 (670)
T ss_dssp ---------HH--HHT-TSSCCCCCSSC--CCCCSCE---EEEE----EECSTTCCSEEEEEETTSEEEEECSTTSSHHH
T ss_pred ---------HH--Hhc-ccccccccccc--ccccccc---eeec----CccccccccceeEecCCCEEEEEeeCCCCHHH
Confidence 00 000 00000000000 0000000 0000 01134799999999999999999999999999
Q ss_pred HHHHHH
Q psy8953 271 LLNILA 276 (286)
Q Consensus 271 Ll~~l~ 276 (286)
|+++|.
T Consensus 364 Ll~~i~ 369 (670)
T 3ux8_A 364 LVNEVL 369 (670)
T ss_dssp HHTTTH
T ss_pred HHHHHH
Confidence 998754
No 8
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.94 E-value=2.7e-27 Score=209.12 Aligned_cols=149 Identities=16% Similarity=0.210 Sum_probs=126.7
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
|||||++ +|+.+. .+|+|+++|+++... ...++.+|||||++.+|+.+||+|+++|+++++ +.+.++++++++
T Consensus 54 KSTLLr~iaGl~~p-~~G~I~i~g~~i~~~--~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~---~~~~~~~~~~v~ 127 (355)
T 1z47_A 54 KTTILRLIAGLERP-TKGDVWIGGKRVTDL--PPQKRNVGLVFQNYALFQHMTVYDNVSFGLREK---RVPKDEMDARVR 127 (355)
T ss_dssp HHHHHHHHHTSSCC-SEEEEEETTEECTTC--CGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHH
T ss_pred HHHHHHHHhCCCCC-CccEEEECCEECCcC--ChhhCcEEEEecCcccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHH
Confidence 8999999 997654 699999999998643 334678999999999999999999999998752 345666555554
Q ss_pred -------hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC-CCEEEEEEcCCC
Q psy8953 80 -------LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ-GRTVVATIHTPS 127 (286)
Q Consensus 80 -------l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~-g~tii~~~h~~~ 127 (286)
|. ...++|||||| ||++||+..+.++++.|++++++ |+|+|+++|+.+
T Consensus 128 ~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~ 207 (355)
T 1z47_A 128 ELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQE 207 (355)
T ss_dssp HHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHH
T ss_pred HHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH
Confidence 22 45679999999 99999999999999999999875 999999999986
Q ss_pred HHHHHHhhhHhhhcCCeeecccChhcHHH
Q psy8953 128 ALLFEKFDSLYALAKGHCIYRGSISRLVP 156 (286)
Q Consensus 128 ~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 156 (286)
++..++|++++|++|+++..|+++++..
T Consensus 208 -~a~~~adri~vl~~G~i~~~g~~~~l~~ 235 (355)
T 1z47_A 208 -EALEVADRVLVLHEGNVEQFGTPEEVYE 235 (355)
T ss_dssp -HHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred -HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 4668899999999999999999988753
No 9
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.94 E-value=3.5e-27 Score=209.10 Aligned_cols=149 Identities=19% Similarity=0.193 Sum_probs=126.4
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
|||||++ +|+... .+|+|+++|+++...+ ..++.+|||||++.+|+++||+|+++|+++.+ +.+.++++++++
T Consensus 42 KSTLLr~iaGl~~p-~~G~I~i~g~~i~~~~--~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~ 115 (362)
T 2it1_A 42 KSTLLYTIAGIYKP-TSGKIYFDEKDVTELP--PKDRNVGLVFQNWALYPHMTVYKNIAFPLELR---KAPREEIDKKVR 115 (362)
T ss_dssp HHHHHHHHHTSSCC-SEEEEEETTEECTTSC--GGGTTEEEECTTCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHH
T ss_pred HHHHHHHHhcCCCC-CceEEEECCEECCcCC--HhHCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHH
Confidence 8999999 997654 6999999999986532 23578999999999999999999999998752 345666655554
Q ss_pred -------hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC-CCEEEEEEcCCC
Q psy8953 80 -------LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ-GRTVVATIHTPS 127 (286)
Q Consensus 80 -------l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~-g~tii~~~h~~~ 127 (286)
|. ...++|||||| ||++||+..+.++++.|++++++ |+|+|+++|+.+
T Consensus 116 ~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~ 195 (362)
T 2it1_A 116 EVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQA 195 (362)
T ss_dssp HHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH
T ss_pred HHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHH
Confidence 22 45679999999 99999999999999999999875 999999999986
Q ss_pred HHHHHHhhhHhhhcCCeeecccChhcHHH
Q psy8953 128 ALLFEKFDSLYALAKGHCIYRGSISRLVP 156 (286)
Q Consensus 128 ~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 156 (286)
++..++|++++|++|+++..|+++++..
T Consensus 196 -~a~~~adri~vl~~G~i~~~g~~~~~~~ 223 (362)
T 2it1_A 196 -EALAMADRIAVIREGEILQVGTPDEVYY 223 (362)
T ss_dssp -HHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred -HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 4668899999999999999999998763
No 10
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.94 E-value=4.8e-27 Score=221.67 Aligned_cols=234 Identities=18% Similarity=0.174 Sum_probs=141.0
Q ss_pred Cchhhhh-cCCCCCCceeEE---------EECCeecCch--hhhcccceeeEEecCcccCC---CCCHHHHHHHHHhcCC
Q psy8953 1 MSIELNV-QSIRLTGSSGKI---------LVNGQERKSA--CIEQFLKLSCYIQQDDALRP---KLTVTEAMMIASHLKL 65 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i---------~~~g~~~~~~--~~~~~~~~~g~v~Q~~~~~~---~~tV~e~l~f~~~~~~ 65 (286)
|||||++ +|.... .+|++ .++|.++... ........++|++|+..+++ ..||.|++.+..
T Consensus 130 KSTLlkiL~Gll~p-~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~---- 204 (607)
T 3bk7_A 130 KTTAVKILAGQLIP-NLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVD---- 204 (607)
T ss_dssp HHHHHHHHTTSSCC-CTTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHTC----
T ss_pred HHHHHHHHhCCCCC-CCCccccccchhhheeCCEehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhhH----
Confidence 8999999 996533 34554 4567654321 00112346889999854322 239999987521
Q ss_pred CCCCCHHHHHHHHhhh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEE
Q psy8953 66 GFKVSTQEKKDQVSLE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVA 121 (286)
Q Consensus 66 ~~~~~~~~~~~~v~l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~ 121 (286)
.....++..+++.|. ...++|||||| ||++||+.++.+++++|++++++|.|||+
T Consensus 205 -~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIi 283 (607)
T 3bk7_A 205 -EVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLV 283 (607)
T ss_dssp -CSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred -HHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEE
Confidence 112345555666532 56779999999 99999999999999999999888999999
Q ss_pred EEcCCCHHHHHHhhhHhhhcCCeeecccC------hhc-HHHHHHhCCCCCCCCCCCCCccccccCCceeeeeccCchhh
Q psy8953 122 TIHTPSALLFEKFDSLYALAKGHCIYRGS------ISR-LVPHLASLGLPCPAYHNPADFPNLAKQGRTVVATIHTPSAL 194 (286)
Q Consensus 122 ~~h~~~~~~~~~~d~v~~l~~G~i~~~g~------~~~-~~~~~~~~g~~~p~~~~~~~~~~~~~~g~tii~~~h~p~~~ 194 (286)
++|+++ .+...+|++++|+++...+ |. ..+ +..++. |.. +.. + ..+ .. .........+.
T Consensus 284 vsHdl~-~~~~~adri~vl~~~~~~~-g~~~~~~~~~~~i~~~~~--~~~-~~~-~-~~~----~~-~~~~~~~~~~~-- 349 (607)
T 3bk7_A 284 VEHDLA-VLDYLSDVIHVVYGEPGVY-GIFSKPKGTRNGINEFLQ--GYL-KDE-N-VRF----RP-YEIRFTKLSER-- 349 (607)
T ss_dssp ECSCHH-HHHHHCSEEEEEESCTTTE-EEECCCEEHHHHHHHHHH--TEE-TTT-T-EEC----CS-SCCCCCCSTTS--
T ss_pred EecChH-HHHhhCCEEEEECCCcccc-ceeccchhHHHHHHHHHh--hcc-hhh-h-hhc----cc-cccccccCCCc--
Confidence 999986 4667899999998653322 21 111 112221 110 000 0 000 00 00000000000
Q ss_pred HHHHHHHHHHHhcCcceecCCccccccccccCCCCCCCCCCCCcccccccceeeeeEEeCCCEEEEEcCCCCcHHHHHHH
Q psy8953 195 LFEKFDSLYALAKGHCIYRGSISRLVPHLASLGLPCPAYHNPADFLNKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNI 274 (286)
Q Consensus 195 l~~~~d~~~~l~~g~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~ 274 (286)
.. ........++++.. . |. ...|++++|+|++||+++|+||||||||||+|+
T Consensus 350 --------------~~----~~~~~~l~~~~l~~---~------~~-~~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~ 401 (607)
T 3bk7_A 350 --------------VD----VERETLVEYPRLVK---D------YG-SFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKM 401 (607)
T ss_dssp --------------CC----CCCCEEEEECCEEE---E------CS-SCEEEECCEEEETTCEEEEECCTTSSHHHHHHH
T ss_pred --------------cc----ccCceEEEEeceEE---E------ec-ceEEEecccccCCCCEEEEECCCCCCHHHHHHH
Confidence 00 00000111111110 0 11 125888999999999999999999999999999
Q ss_pred HHcCCCCC
Q psy8953 275 LAGLTYLN 282 (286)
Q Consensus 275 l~GL~~~~ 282 (286)
|+|++++.
T Consensus 402 l~Gl~~p~ 409 (607)
T 3bk7_A 402 LAGVEEPT 409 (607)
T ss_dssp HHTSSCCS
T ss_pred HhcCCCCC
Confidence 99999875
No 11
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.94 E-value=2.9e-27 Score=198.75 Aligned_cols=151 Identities=19% Similarity=0.239 Sum_probs=122.1
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcc----cceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQF----LKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKK 75 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~----~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~ 75 (286)
|||||++ +|+.+. .+|+|+++|+++...+...+ ++.+|||+|++.+++.+||+|+++|++..+.....+.++..
T Consensus 44 KSTLl~~l~Gl~~p-~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~ 122 (235)
T 3tif_A 44 KSTMLNIIGCLDKP-TEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERR 122 (235)
T ss_dssp HHHHHHHHTTSSCC-SEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHH
T ss_pred HHHHHHHHhcCCCC-CceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHH
Confidence 8999999 997654 79999999999865322222 34699999999999999999999999875432234555555
Q ss_pred HHHh-------h-----h-hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC-CCEEEEE
Q psy8953 76 DQVS-------L-----E-LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ-GRTVVAT 122 (286)
Q Consensus 76 ~~v~-------l-----~-~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~-g~tii~~ 122 (286)
+++. + . ....+|||||| ||++||+.++.+++++|++++++ |+|||++
T Consensus 123 ~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~v 202 (235)
T 3tif_A 123 KRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVV 202 (235)
T ss_dssp HHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEE
T ss_pred HHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 5544 2 1 35678999999 99999999999999999999875 9999999
Q ss_pred EcCCCHHHHHHhhhHhhhcCCeeecccChhcH
Q psy8953 123 IHTPSALLFEKFDSLYALAKGHCIYRGSISRL 154 (286)
Q Consensus 123 ~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 154 (286)
+|+++ . ...+|++++|++|+++..++++++
T Consensus 203 tHd~~-~-~~~~d~i~~l~~G~i~~~~~~~~~ 232 (235)
T 3tif_A 203 THDIN-V-ARFGERIIYLKDGEVEREEKLRGF 232 (235)
T ss_dssp CSCHH-H-HTTSSEEEEEETTEEEEEEECC--
T ss_pred cCCHH-H-HHhCCEEEEEECCEEEEEcChhhh
Confidence 99985 3 478999999999999999887764
No 12
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.94 E-value=4.2e-27 Score=209.28 Aligned_cols=149 Identities=15% Similarity=0.175 Sum_probs=119.6
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
|||||++ +|+... .+|+|+++|+++... ...++.+|||||++.+|+++||+|+++|++++ .+.+.++++++++
T Consensus 50 KSTLLr~iaGl~~p-~~G~I~i~g~~i~~~--~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~---~~~~~~~~~~~v~ 123 (372)
T 1v43_A 50 KTTTLRMIAGLEEP-TEGRIYFGDRDVTYL--PPKDRNISMVFQSYAVWPHMTVYENIAFPLKI---KKFPKDEIDKRVR 123 (372)
T ss_dssp HHHHHHHHHTSSCC-SEEEEEETTEECTTS--CGGGGTEEEEEC------CCCHHHHHHTTCC-----CCCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCC-CceEEEECCEECCCC--ChhhCcEEEEecCcccCCCCCHHHHHHHHHHh---cCCCHHHHHHHHH
Confidence 8999999 997654 699999999998653 22357899999999999999999999998764 2345666665554
Q ss_pred -------hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC-CCEEEEEEcCCC
Q psy8953 80 -------LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ-GRTVVATIHTPS 127 (286)
Q Consensus 80 -------l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~-g~tii~~~h~~~ 127 (286)
|. ...++|||||| ||++||+..+.++++.|++++++ |+|+|+++|+.+
T Consensus 124 ~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~ 203 (372)
T 1v43_A 124 WAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV 203 (372)
T ss_dssp HHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH
T ss_pred HHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 22 45679999999 99999999999999999999875 999999999986
Q ss_pred HHHHHHhhhHhhhcCCeeecccChhcHHH
Q psy8953 128 ALLFEKFDSLYALAKGHCIYRGSISRLVP 156 (286)
Q Consensus 128 ~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 156 (286)
++..++|++++|++|+++..|+++++..
T Consensus 204 -~a~~~adri~vl~~G~i~~~g~~~~l~~ 231 (372)
T 1v43_A 204 -EAMTMGDRIAVMNRGQLLQIGSPTEVYL 231 (372)
T ss_dssp -HHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred -HHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 4668899999999999999999998863
No 13
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.94 E-value=4.9e-27 Score=209.18 Aligned_cols=151 Identities=19% Similarity=0.206 Sum_probs=126.1
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchh----hhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSAC----IEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKK 75 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~----~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~ 75 (286)
|||||++ +|+... .+|+|+++|+++.... ....++.+|||||++.+|+++||+|+++|+++++ +.+.++++
T Consensus 42 KSTLLr~iaGl~~p-~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~ 117 (372)
T 1g29_1 42 KTTTLRMIAGLEEP-SRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEID 117 (372)
T ss_dssp HHHHHHHHHTSSCC-SEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHT---TCCHHHHH
T ss_pred HHHHHHHHHcCCCC-CccEEEECCEECccccccccCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHH
Confidence 8999999 997654 6999999999875410 1223578999999999999999999999998752 34566665
Q ss_pred HHHh-------hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC-CCEEEEEE
Q psy8953 76 DQVS-------LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ-GRTVVATI 123 (286)
Q Consensus 76 ~~v~-------l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~-g~tii~~~ 123 (286)
++++ |. ...++|||||| ||++||+..+.++++.|+++.++ |+|+|+++
T Consensus 118 ~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vT 197 (372)
T 1g29_1 118 QRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVT 197 (372)
T ss_dssp HHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred HHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEC
Confidence 5554 22 45679999999 99999999999999999999875 99999999
Q ss_pred cCCCHHHHHHhhhHhhhcCCeeecccChhcHHH
Q psy8953 124 HTPSALLFEKFDSLYALAKGHCIYRGSISRLVP 156 (286)
Q Consensus 124 h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 156 (286)
|+.+ ++..++|++++|++|+++..|+++++..
T Consensus 198 Hd~~-~a~~~adri~vl~~G~i~~~g~~~~l~~ 229 (372)
T 1g29_1 198 HDQV-EAMTMGDRIAVMNRGVLQQVGSPDEVYD 229 (372)
T ss_dssp SCHH-HHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCHH-HHHHhCCEEEEEeCCEEEEeCCHHHHHh
Confidence 9986 4668899999999999999999998763
No 14
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.94 E-value=4.1e-27 Score=208.43 Aligned_cols=150 Identities=19% Similarity=0.251 Sum_probs=125.9
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchh---hhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSAC---IEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKD 76 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~---~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~ 76 (286)
|||||++ +|+... .+|+|+++|+++.... ....++.+|||||++.+|+.+||+|+++|++++ .+.+.+++++
T Consensus 44 KSTLLr~iaGl~~p-~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~---~~~~~~~~~~ 119 (353)
T 1oxx_K 44 KTTFMRIIAGLDVP-STGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTN---MKMSKEEIRK 119 (353)
T ss_dssp HHHHHHHHHTSSCC-SEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTT---SSCCHHHHHH
T ss_pred HHHHHHHHhCCCCC-CceEEEECCEECcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHH---cCCCHHHHHH
Confidence 8999999 997654 6999999999875310 133467899999999999999999999999874 2345666555
Q ss_pred HHh-------hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC-CCEEEEEEc
Q psy8953 77 QVS-------LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ-GRTVVATIH 124 (286)
Q Consensus 77 ~v~-------l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~-g~tii~~~h 124 (286)
+++ |. ...++|||||| ||++||+..+.++++.|++++++ |+|+|+++|
T Consensus 120 ~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTH 199 (353)
T 1oxx_K 120 RVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSH 199 (353)
T ss_dssp HHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEES
T ss_pred HHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 554 22 45679999999 99999999999999999999875 999999999
Q ss_pred CCCHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 125 TPSALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 125 ~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
+.+ ++..++|++++|++|+++..|+++++.
T Consensus 200 d~~-~~~~~adri~vl~~G~i~~~g~~~~l~ 229 (353)
T 1oxx_K 200 DPA-DIFAIADRVGVLVKGKLVQVGKPEDLY 229 (353)
T ss_dssp CHH-HHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred CHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 986 466889999999999999999998875
No 15
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.94 E-value=2.9e-27 Score=209.35 Aligned_cols=149 Identities=16% Similarity=0.193 Sum_probs=124.7
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
|||||++ +|+... .+|+|+++|+++... ...++.+|||||++.+|+++||+|+++|+++++ +.+.++++++++
T Consensus 42 KSTLLr~iaGl~~p-~~G~I~i~g~~i~~~--~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~ 115 (359)
T 2yyz_A 42 KTTTLLMLAGIYKP-TSGEIYFDDVLVNDI--PPKYREVGMVFQNYALYPHMTVFENIAFPLRAR---RISKDEVEKRVV 115 (359)
T ss_dssp HHHHHHHHHTSSCC-SEEEEEETTEECTTS--CGGGTTEEEECSSCCCCTTSCHHHHHHGGGSSS---CSHHHHTTHHHH
T ss_pred HHHHHHHHHCCCCC-CccEEEECCEECCCC--ChhhCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHH
Confidence 8999999 997654 699999999998653 223578999999999999999999999988642 234444444443
Q ss_pred -------hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC-CCEEEEEEcCCC
Q psy8953 80 -------LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ-GRTVVATIHTPS 127 (286)
Q Consensus 80 -------l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~-g~tii~~~h~~~ 127 (286)
|. ...++|||||| ||++||+..+.++++.|++++++ |+|+|+++|+.+
T Consensus 116 ~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~ 195 (359)
T 2yyz_A 116 EIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQA 195 (359)
T ss_dssp HHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHH
T ss_pred HHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH
Confidence 22 45779999999 99999999999999999999875 999999999986
Q ss_pred HHHHHHhhhHhhhcCCeeecccChhcHHH
Q psy8953 128 ALLFEKFDSLYALAKGHCIYRGSISRLVP 156 (286)
Q Consensus 128 ~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 156 (286)
++..++|++++|++|+++..|+++++..
T Consensus 196 -~~~~~adri~vl~~G~i~~~g~~~~l~~ 223 (359)
T 2yyz_A 196 -EAMTMASRIAVFNQGKLVQYGTPDEVYD 223 (359)
T ss_dssp -HHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred -HHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 4668899999999999999999998763
No 16
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.94 E-value=8.5e-27 Score=198.72 Aligned_cols=151 Identities=19% Similarity=0.254 Sum_probs=122.7
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecC--chhhhcccceeeEEecCcccCCCCCHHHHHHHHH-hcCCCCCCCHHHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERK--SACIEQFLKLSCYIQQDDALRPKLTVTEAMMIAS-HLKLGFKVSTQEKKD 76 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~--~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~-~~~~~~~~~~~~~~~ 76 (286)
|||||++ +|+.+. .+|+|+++|+++. ......+++.+|||+|++.+++.+||+|++.|++ .+. ..+.++.++
T Consensus 63 KSTLlk~l~Gl~~p-~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~ 138 (263)
T 2olj_A 63 KSTFLRCLNLLEDF-DEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVR---KWPREKAEA 138 (263)
T ss_dssp HHHHHHHHTTSSCC-SEEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTS---CCCHHHHHH
T ss_pred HHHHHHHHHcCCCC-CCcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHc---CCCHHHHHH
Confidence 8999999 997654 6999999999874 1112344678999999999999999999999975 432 234444444
Q ss_pred HHh-------hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcC
Q psy8953 77 QVS-------LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVATIHT 125 (286)
Q Consensus 77 ~v~-------l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~ 125 (286)
+++ |. ...++|||||| ||++||+.++.+++++|++++++|+|||+++|+
T Consensus 139 ~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd 218 (263)
T 2olj_A 139 KAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHE 218 (263)
T ss_dssp HHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSC
T ss_pred HHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCC
Confidence 443 22 45679999999 999999999999999999998789999999999
Q ss_pred CCHHHHHHhhhHhhhcCCeeecccChhcHHH
Q psy8953 126 PSALLFEKFDSLYALAKGHCIYRGSISRLVP 156 (286)
Q Consensus 126 ~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 156 (286)
++ .+..++|++++|++|++++.|+++++..
T Consensus 219 ~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
T 2olj_A 219 MG-FAREVGDRVLFMDGGYIIEEGKPEDLFD 248 (263)
T ss_dssp HH-HHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HH-HHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 86 4667899999999999999999887653
No 17
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.94 E-value=8.4e-27 Score=217.74 Aligned_cols=235 Identities=18% Similarity=0.168 Sum_probs=141.0
Q ss_pred Cchhhhh-cCCCCCCceeEE---------EECCeecCch--hhhcccceeeEEecCcccCCC---CCHHHHHHHHHhcCC
Q psy8953 1 MSIELNV-QSIRLTGSSGKI---------LVNGQERKSA--CIEQFLKLSCYIQQDDALRPK---LTVTEAMMIASHLKL 65 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i---------~~~g~~~~~~--~~~~~~~~~g~v~Q~~~~~~~---~tV~e~l~f~~~~~~ 65 (286)
|||||++ +|.... .+|++ .++|.++... ........++|++|+..+++. .||.|.+.+...
T Consensus 60 KSTLlk~l~Gl~~p-~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~~--- 135 (538)
T 1yqt_A 60 KSTAVKILAGQLIP-NLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKADE--- 135 (538)
T ss_dssp HHHHHHHHHTSSCC-CTTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHCS---
T ss_pred HHHHHHHHhCCCCC-CCCccCcchhhhHHhhCCccHHHHHHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhhH---
Confidence 8999999 996433 34554 4567654321 001123468899998654332 389998865321
Q ss_pred CCCCCHHHHHHHHhhh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEE
Q psy8953 66 GFKVSTQEKKDQVSLE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVA 121 (286)
Q Consensus 66 ~~~~~~~~~~~~v~l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~ 121 (286)
....++..+++.+. ...++|||||| ||++||+.++.++++.|++++++|.|||+
T Consensus 136 --~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~ 213 (538)
T 1yqt_A 136 --TGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLV 213 (538)
T ss_dssp --SSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred --HHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEE
Confidence 11245555666532 55789999999 99999999999999999999888999999
Q ss_pred EEcCCCHHHHHHhhhHhhhcCCeeecc---cChh--c-HHHHHHhCCCCCCCCCCCCCccccccCCceeeeeccCchhhH
Q psy8953 122 TIHTPSALLFEKFDSLYALAKGHCIYR---GSIS--R-LVPHLASLGLPCPAYHNPADFPNLAKQGRTVVATIHTPSALL 195 (286)
Q Consensus 122 ~~h~~~~~~~~~~d~v~~l~~G~i~~~---g~~~--~-~~~~~~~~g~~~p~~~~~~~~~~~~~~g~tii~~~h~p~~~l 195 (286)
++|+.+ .+...+|++++|++|...+. .+.. + +..+.. +..... . ... .. .........+...
T Consensus 214 vsHd~~-~~~~~~dri~vl~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~-~~~----~~-~~~~~~~~~~~~~- 281 (538)
T 1yqt_A 214 VEHDLA-VLDYLSDIIHVVYGEPGVYGIFSQPKGTRNGINEFLR--GYLKDE--N-VRF----RP-YEIKFTKTGERVE- 281 (538)
T ss_dssp ECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEEHHHHHHHHHH--TEETTT--T-EEC----SS-SCCCCCCSSGGGS-
T ss_pred EeCCHH-HHHHhCCEEEEEcCcccccccccchhhHHHHHHHHhh--hccchh--h-hcc----cc-cccccccCCcccc-
Confidence 999986 56788999999986533221 1111 1 111111 100000 0 000 00 0000000000000
Q ss_pred HHHHHHHHHHhcCcceecCCccccccccccCCCCCCCCCCCCcccccccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHH
Q psy8953 196 FEKFDSLYALAKGHCIYRGSISRLVPHLASLGLPCPAYHNPADFLNKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNIL 275 (286)
Q Consensus 196 ~~~~d~~~~l~~g~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l 275 (286)
..+ .....++++.. . |. ...+++++|+|++||+++|+|+||||||||+|+|
T Consensus 282 ----------~~~---------~~~l~~~~l~~---~------~~-~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l 332 (538)
T 1yqt_A 282 ----------IER---------ETLVTYPRLVK---D------YG-SFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKML 332 (538)
T ss_dssp ----------SCC---------CEEEEECCEEE---E------ET-TEEEEECCEEEETTCEEEEECCTTSSHHHHHHHH
T ss_pred ----------cCC---------CeEEEEeeEEE---E------EC-CEEEEeCccccCCCCEEEEECCCCCCHHHHHHHH
Confidence 000 00011111110 0 11 1258888999999999999999999999999999
Q ss_pred HcCCCCC
Q psy8953 276 AGLTYLN 282 (286)
Q Consensus 276 ~GL~~~~ 282 (286)
+|++++.
T Consensus 333 ~Gl~~p~ 339 (538)
T 1yqt_A 333 AGVEEPT 339 (538)
T ss_dssp HTSSCCS
T ss_pred hCCCCCC
Confidence 9999875
No 18
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.93 E-value=3.1e-26 Score=195.46 Aligned_cols=151 Identities=19% Similarity=0.246 Sum_probs=122.1
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCc----------h---hhhcccceeeEEecCcccCCCCCHHHHHHHHH-hcCC
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKS----------A---CIEQFLKLSCYIQQDDALRPKLTVTEAMMIAS-HLKL 65 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~----------~---~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~-~~~~ 65 (286)
|||||++ +|+.+. .+|+|+++|+++.. . ....+++.+|||+|++.+++.+||+|++.|++ .+.
T Consensus 45 KSTLlk~l~Gl~~p-~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~- 122 (262)
T 1b0u_A 45 KSTFLRCINFLEKP-SEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL- 122 (262)
T ss_dssp HHHHHHHHTTSSCC-SEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTT-
T ss_pred HHHHHHHHhcCCCC-CCcEEEECCEEccccccccccccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhc-
Confidence 8999999 997654 69999999998751 1 11234678999999999999999999999975 432
Q ss_pred CCCCCHHHHHHHHh-------h----h--hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHH
Q psy8953 66 GFKVSTQEKKDQVS-------L----E--LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLA 113 (286)
Q Consensus 66 ~~~~~~~~~~~~v~-------l----~--~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~ 113 (286)
..+.++.++++. | . ...++|||||| ||++||+.++..++++|++++
T Consensus 123 --~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~ 200 (262)
T 1b0u_A 123 --GLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLA 200 (262)
T ss_dssp --CCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHH
T ss_pred --CCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHH
Confidence 234444444433 2 2 34579999999 999999999999999999998
Q ss_pred hCCCEEEEEEcCCCHHHHHHhhhHhhhcCCeeecccChhcHHH
Q psy8953 114 KQGRTVVATIHTPSALLFEKFDSLYALAKGHCIYRGSISRLVP 156 (286)
Q Consensus 114 ~~g~tii~~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 156 (286)
++|+|||+++|+++ .+..++|++++|++|++++.|+++++..
T Consensus 201 ~~g~tvi~vtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 242 (262)
T 1b0u_A 201 EEGKTMVVVTHEMG-FARHVSSHVIFLHQGKIEEEGDPEQVFG 242 (262)
T ss_dssp HTTCCEEEECSCHH-HHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred hCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 78999999999986 4667899999999999999999887653
No 19
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.93 E-value=2.5e-26 Score=195.20 Aligned_cols=150 Identities=17% Similarity=0.241 Sum_probs=122.4
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
|||||++ +|+.+. .+|+|+++|+++... ...+++.+|||+|++.+++.+||+|++.|.+.+. ..+.++.++++.
T Consensus 54 KSTLlk~l~Gl~~p-~~G~I~~~g~~~~~~-~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~---~~~~~~~~~~~~ 128 (256)
T 1vpl_A 54 KTTTLRIISTLIKP-SSGIVTVFGKNVVEE-PHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEMVE 128 (256)
T ss_dssp HHHHHHHHTTSSCC-SEEEEEETTEETTTC-HHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHH---CCCHHHHHHHHH
T ss_pred HHHHHHHHhcCCCC-CceEEEECCEECCcc-HHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHc---CCChHHHHHHHH
Confidence 8999999 997654 699999999998542 2345678999999999999999999999987642 223433333332
Q ss_pred -------hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcCCCH
Q psy8953 80 -------LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVATIHTPSA 128 (286)
Q Consensus 80 -------l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~~~~ 128 (286)
|. ...++|||||| ||++||+.++.+++++|++++++|+|||+++|+++
T Consensus 129 ~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~- 207 (256)
T 1vpl_A 129 RATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNML- 207 (256)
T ss_dssp HHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH-
T ss_pred HHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-
Confidence 22 44679999999 99999999999999999999878999999999985
Q ss_pred HHHHHhhhHhhhcCCeeecccChhcHHH
Q psy8953 129 LLFEKFDSLYALAKGHCIYRGSISRLVP 156 (286)
Q Consensus 129 ~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 156 (286)
.+..++|++++|++|++++.|+++++..
T Consensus 208 ~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 235 (256)
T 1vpl_A 208 EVEFLCDRIALIHNGTIVETGTVEELKE 235 (256)
T ss_dssp HHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred HHHHHCCEEEEEECCEEEEecCHHHHHH
Confidence 4557799999999999999999887754
No 20
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.93 E-value=2.5e-26 Score=202.73 Aligned_cols=148 Identities=17% Similarity=0.227 Sum_probs=122.7
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcC-CCCCCCHHHHHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLK-LGFKVSTQEKKDQV 78 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~-~~~~~~~~~~~~~v 78 (286)
|||||++ +|+... .+|+|+++|+++... ...++.+|||||++.+|+.+||+|+++|+++.+ .+. .++..+.+
T Consensus 39 KSTLLr~iaGl~~p-~~G~I~~~g~~i~~~--~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~---~~~v~~~l 112 (348)
T 3d31_A 39 KTLFLELIAGFHVP-DSGRILLDGKDVTDL--SPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKD---PKRVLDTA 112 (348)
T ss_dssp HHHHHHHHHTSSCC-SEEEEEETTEECTTS--CHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCCCC---HHHHHHHH
T ss_pred HHHHHHHHHcCCCC-CCcEEEECCEECCCC--chhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCH---HHHHHHHH
Confidence 8999999 997654 699999999998642 234578999999999999999999999998742 221 13333323
Q ss_pred h---hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC-CCEEEEEEcCCCHHH
Q psy8953 79 S---LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ-GRTVVATIHTPSALL 130 (286)
Q Consensus 79 ~---l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~-g~tii~~~h~~~~~~ 130 (286)
+ |. ...++|||||| ||++||+..+.++++.|++++++ |+|+|+++|+.+ ++
T Consensus 113 ~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-~~ 191 (348)
T 3d31_A 113 RDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT-EA 191 (348)
T ss_dssp HHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH-HH
T ss_pred HHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH
Confidence 2 22 56789999999 99999999999999999999774 999999999986 46
Q ss_pred HHHhhhHhhhcCCeeecccChhcHH
Q psy8953 131 FEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 131 ~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
..++|++++|++|+++..|+++++.
T Consensus 192 ~~~adri~vl~~G~i~~~g~~~~~~ 216 (348)
T 3d31_A 192 RIMADRIAVVMDGKLIQVGKPEEIF 216 (348)
T ss_dssp HHHCSEEEEESSSCEEEEECHHHHH
T ss_pred HHhCCEEEEEECCEEEEECCHHHHH
Confidence 6889999999999999999998875
No 21
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.93 E-value=3.4e-26 Score=190.96 Aligned_cols=145 Identities=16% Similarity=0.208 Sum_probs=117.9
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhh---ccc-ceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIE---QFL-KLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKK 75 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~---~~~-~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~ 75 (286)
|||||++ +|+.+. .+|+|.++|+++...+.. .++ +.+|||+|++.+++.+||+|++.|++.+. ..+.++.+
T Consensus 43 KSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~---~~~~~~~~ 118 (224)
T 2pcj_A 43 KSTLLYILGLLDAP-TEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKM---GKPKKEAK 118 (224)
T ss_dssp HHHHHHHHTTSSCC-SEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT---TCCHHHHH
T ss_pred HHHHHHHHhcCCCC-CceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHc---CCCHHHHH
Confidence 8999999 997654 699999999998642211 222 67999999999999999999999988642 23344444
Q ss_pred HHHh-------hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEEEc
Q psy8953 76 DQVS-------LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVATIH 124 (286)
Q Consensus 76 ~~v~-------l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h 124 (286)
+++. +. ...++|||||| ||++||+.++..++++|++++++|+|||+++|
T Consensus 119 ~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtH 198 (224)
T 2pcj_A 119 ERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTH 198 (224)
T ss_dssp HHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred HHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcC
Confidence 4433 22 45679999999 99999999999999999999877999999999
Q ss_pred CCCHHHHHHhhhHhhhcCCeeecccCh
Q psy8953 125 TPSALLFEKFDSLYALAKGHCIYRGSI 151 (286)
Q Consensus 125 ~~~~~~~~~~d~v~~l~~G~i~~~g~~ 151 (286)
+++. + ..+|++++|++|++++.|+.
T Consensus 199 d~~~-~-~~~d~v~~l~~G~i~~~g~~ 223 (224)
T 2pcj_A 199 EREL-A-ELTHRTLEMKDGKVVGEITR 223 (224)
T ss_dssp CHHH-H-TTSSEEEEEETTEEEEEEEC
T ss_pred CHHH-H-HhCCEEEEEECCEEEEEeee
Confidence 9753 4 78999999999999998864
No 22
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.92 E-value=3.1e-26 Score=213.45 Aligned_cols=236 Identities=19% Similarity=0.131 Sum_probs=136.1
Q ss_pred Cchhhhh-cCCCCCCceeEE-----------EECCeecCchhhhcc--cceeeEEecC----cccCCCCCHHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKI-----------LVNGQERKSACIEQF--LKLSCYIQQD----DALRPKLTVTEAMMIASH 62 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i-----------~~~g~~~~~~~~~~~--~~~~g~v~Q~----~~~~~~~tV~e~l~f~~~ 62 (286)
|||||++ +|.... .+|+| .++|+++........ ...+..+.|. +.+ ...+|.|.+.....
T Consensus 38 KSTLlkiL~Gl~~p-~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~l~~~~~ 115 (538)
T 3ozx_A 38 KTTVLKILAGEIIP-NFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKF-LKGTVNEILTKIDE 115 (538)
T ss_dssp HHHHHHHHTTSSCC-CTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGGTT-CCSBHHHHHHHHCC
T ss_pred HHHHHHHHhcCCCC-CCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhhhh-ccCcHHHHhhcchh
Confidence 8999999 996433 35776 577766532100111 1123333333 333 33488876543221
Q ss_pred cCCCCCCCHHHHHHHHhhh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCE
Q psy8953 63 LKLGFKVSTQEKKDQVSLE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRT 118 (286)
Q Consensus 63 ~~~~~~~~~~~~~~~v~l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~t 118 (286)
....++..+++.+. ...++|||||| ||++||+.++.+++++|+++++ |+|
T Consensus 116 -----~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~-g~t 189 (538)
T 3ozx_A 116 -----RGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLK-NKY 189 (538)
T ss_dssp -----SSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCT-TSE
T ss_pred -----HHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhC-CCE
Confidence 12355666666532 55779999999 9999999999999999999976 999
Q ss_pred EEEEEcCCCHHHHHHhhhHhhhcCCeeecccC--h---h-cHHHHHHhCCCCCCCCCCCCCccccccCCceeeeeccCch
Q psy8953 119 VVATIHTPSALLFEKFDSLYALAKGHCIYRGS--I---S-RLVPHLASLGLPCPAYHNPADFPNLAKQGRTVVATIHTPS 192 (286)
Q Consensus 119 ii~~~h~~~~~~~~~~d~v~~l~~G~i~~~g~--~---~-~~~~~~~~~g~~~p~~~~~~~~~~~~~~g~tii~~~h~p~ 192 (286)
||+++|+.+ .+...+|++++|++|...+... + . ....++. |+. +.. +. . ... .........+.
T Consensus 190 ii~vsHdl~-~~~~~~d~i~vl~~~~~~~g~~~~~~~~~~~~~~~~~--g~~-~~~-~~-~----~r~-~~~~~~~~~~~ 258 (538)
T 3ozx_A 190 VIVVDHDLI-VLDYLTDLIHIIYGESSVYGRVSKSYAARVGINNFLK--GYL-PAE-NM-K----IRP-DEIKFMLKEVS 258 (538)
T ss_dssp EEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEEHHHHHHHHHH--TEE-TTT-TE-E----CSS-SCCCCSCC---
T ss_pred EEEEEeChH-HHHhhCCEEEEecCCcccccccchhhhHHHHHHHHHh--hhc-hhh-hh-h----ccc-hhhhccccccc
Confidence 999999986 5778899999998765443211 1 1 1112222 110 000 00 0 000 00000000000
Q ss_pred hhHHHHHHHHHHHhcCcceecCCccccccccccCCCCCCCCCCCCcccccccceeeeeEEeCCCEEEEEcCCCCcHHHHH
Q psy8953 193 ALLFEKFDSLYALAKGHCIYRGSISRLVPHLASLGLPCPAYHNPADFLNKEILHGISGEFKAGQLTAIMGPSGAGKSTLL 272 (286)
Q Consensus 193 ~~l~~~~d~~~~l~~g~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl 272 (286)
+.. ....+.. ...++++.. . |. ...+++++++|++||+++|+|+||||||||+
T Consensus 259 -------~~~-~~~~~~~---------~l~~~~l~~---~------~~-~~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl 311 (538)
T 3ozx_A 259 -------DLD-LSKDLKT---------KMKWTKIIK---K------LG-DFQLVVDNGEAKEGEIIGILGPNGIGKTTFA 311 (538)
T ss_dssp ---------------CCE---------EEEECCEEE---E------ET-TEEEEECCEEEETTCEEEEECCTTSSHHHHH
T ss_pred -------ccc-ccccccc---------eEEEcceEE---E------EC-CEEEEeccceECCCCEEEEECCCCCCHHHHH
Confidence 000 0000000 001111100 0 11 1247778999999999999999999999999
Q ss_pred HHHHcCCCCC
Q psy8953 273 NILAGLTYLN 282 (286)
Q Consensus 273 ~~l~GL~~~~ 282 (286)
|+|+|+++++
T Consensus 312 ~~l~Gl~~p~ 321 (538)
T 3ozx_A 312 RILVGEITAD 321 (538)
T ss_dssp HHHTTSSCCS
T ss_pred HHHhCCCCCC
Confidence 9999999985
No 23
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.92 E-value=6.3e-26 Score=191.25 Aligned_cols=152 Identities=17% Similarity=0.249 Sum_probs=119.0
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcc-cceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHH-HH--
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQF-LKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQE-KK-- 75 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~-~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~-~~-- 75 (286)
|||||++ +|+.+. .+|+|+++|+++...+...+ ++.+|||+|++.+++.+||+|++.|+.....+.. ..++ ..
T Consensus 45 KSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~-~~~~~~~~~ 122 (240)
T 1ji0_A 45 KTTTLSAIAGLVRA-QKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKE-GIKRDLEWI 122 (240)
T ss_dssp HHHHHHHHTTSSCC-SEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCCCSS-HHHHHHHHH
T ss_pred HHHHHHHHhCCCCC-CCceEEECCEECCCCCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhhhcCCCHH-HHHHHHHHH
Confidence 8999999 997654 69999999999864322222 4569999999999999999999999753222111 1111 11
Q ss_pred -HHH-hhh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcCCCHH
Q psy8953 76 -DQV-SLE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVATIHTPSAL 129 (286)
Q Consensus 76 -~~v-~l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~~~~~ 129 (286)
+++ .+. ...++|||||| ||++||+.++..++++|++++++|+|||+++|+++ .
T Consensus 123 l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~-~ 201 (240)
T 1ji0_A 123 FSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL-G 201 (240)
T ss_dssp HHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH-H
T ss_pred HHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-H
Confidence 222 232 34578999999 99999999999999999999878999999999985 4
Q ss_pred HHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 130 LFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 130 ~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
+..++|++++|++|++++.|+++++.
T Consensus 202 ~~~~~d~v~~l~~G~i~~~g~~~~~~ 227 (240)
T 1ji0_A 202 ALKVAHYGYVLETGQIVLEGKASELL 227 (240)
T ss_dssp HHHHCSEEEEEETTEEEEEEEHHHHH
T ss_pred HHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 66889999999999999999987764
No 24
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.92 E-value=2.8e-26 Score=193.13 Aligned_cols=151 Identities=13% Similarity=0.141 Sum_probs=120.0
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
|||||++ +|+.+. .+|+|.++|+++... ...++.+|||+|++.+++.+||+|++.|++.+.. .....++..+.++
T Consensus 37 KSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~--~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~-~~~~~~~~~~~l~ 112 (240)
T 2onk_A 37 KSVFLELIAGIVKP-DRGEVRLNGADITPL--PPERRGIGFVPQDYALFPHLSVYRNIAYGLRNVE-RVERDRRVREMAE 112 (240)
T ss_dssp HHHHHHHHHTSSCC-SEEEEEETTEECTTS--CTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTSC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCC-CceEEEECCEECCcC--chhhCcEEEEcCCCccCCCCcHHHHHHHHHHHcC-CchHHHHHHHHHH
Confidence 8999999 997654 699999999998542 3346789999999999999999999999865311 0000111222222
Q ss_pred ---hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC-CCEEEEEEcCCCHHHH
Q psy8953 80 ---LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ-GRTVVATIHTPSALLF 131 (286)
Q Consensus 80 ---l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~-g~tii~~~h~~~~~~~ 131 (286)
+. ...++|||||| ||++||+.++..++++|++++++ |+|||+++|+++ .+.
T Consensus 113 ~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~-~~~ 191 (240)
T 2onk_A 113 KLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI-EAA 191 (240)
T ss_dssp TTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHH-HHH
T ss_pred HcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHH
Confidence 22 45679999999 99999999999999999999765 999999999986 466
Q ss_pred HHhhhHhhhcCCeeecccChhcHHH
Q psy8953 132 EKFDSLYALAKGHCIYRGSISRLVP 156 (286)
Q Consensus 132 ~~~d~v~~l~~G~i~~~g~~~~~~~ 156 (286)
..+|++++|++|++++.|+++++..
T Consensus 192 ~~~d~i~~l~~G~i~~~g~~~~~~~ 216 (240)
T 2onk_A 192 MLADEVAVMLNGRIVEKGKLKELFS 216 (240)
T ss_dssp HHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HhCCEEEEEECCEEEEECCHHHHHh
Confidence 8899999999999999999887653
No 25
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.92 E-value=5.7e-26 Score=194.08 Aligned_cols=152 Identities=17% Similarity=0.145 Sum_probs=123.6
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHH--
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQ-- 77 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~-- 77 (286)
||||+++ +|+.+. .+|+|+++|+++...+...+++.+|||+|++.+++.+||+|++.|+....- .....+...+.
T Consensus 50 KSTLl~~l~Gl~~p-~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~-~~~~~~~~~~~l~ 127 (266)
T 4g1u_C 50 KSTLLRLLTGYLSP-SHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPYG-GSQDRQALQQVMA 127 (266)
T ss_dssp HHHHHHHHTSSSCC-SSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTSC-STTHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCC-CCcEEEECCEECCcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhhcC-cHHHHHHHHHHHH
Confidence 8999999 997654 689999999998765555667889999999998889999999999876431 11112222222
Q ss_pred -Hhhh-----hhhcccCCccc-------------------------cCCCcchHHHHHHHHHHHHHHhC-CCEEEEEEcC
Q psy8953 78 -VSLE-----LWNNFCKKKKK-------------------------KKRGLDSSSCSQCVSLLANLAKQ-GRTVVATIHT 125 (286)
Q Consensus 78 -v~l~-----~~~~~~gG~kq-------------------------ptsgLD~~~~~~~~~~l~~l~~~-g~tii~~~h~ 125 (286)
+.+. ....+|||||| ||++||+.++.+++++|++++++ |+|||+++|+
T Consensus 128 ~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHd 207 (266)
T 4g1u_C 128 QTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHD 207 (266)
T ss_dssp HTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSC
T ss_pred HcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcC
Confidence 2222 45679999998 99999999999999999999876 6899999999
Q ss_pred CCHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 126 PSALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 126 ~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
++ .+..+|||+++|++|++++.|+++++.
T Consensus 208 l~-~~~~~~d~v~vl~~G~i~~~g~~~~~~ 236 (266)
T 4g1u_C 208 LN-LAALYADRIMLLAQGKLVACGTPEEVL 236 (266)
T ss_dssp HH-HHHHHCSEEEEEETTEEEEEECHHHHC
T ss_pred HH-HHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 86 466789999999999999999998874
No 26
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.92 E-value=5.2e-26 Score=193.69 Aligned_cols=151 Identities=16% Similarity=0.157 Sum_probs=120.2
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchh-hhcccceeeEEecCcccCCCCCHHHHHHHHHhc-CCCC---------C
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSAC-IEQFLKLSCYIQQDDALRPKLTVTEAMMIASHL-KLGF---------K 68 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~-~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~-~~~~---------~ 68 (286)
|||||++ +|+.+. .+|+|.++|+++...+ ...+++.+|||+|++.+++.+||+|++.|++.. .... .
T Consensus 46 KSTLlk~l~Gl~~p-~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~ 124 (257)
T 1g6h_A 46 KSTLINVITGFLKA-DEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWI 124 (257)
T ss_dssp HHHHHHHHTTSSCC-SEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSC
T ss_pred HHHHHHHHhCCCCC-CCcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCccccccccccc
Confidence 8999999 997654 6999999999985421 123456799999999999999999999998753 1110 0
Q ss_pred CCHHHHHHHHh-------hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCC
Q psy8953 69 VSTQEKKDQVS-------LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGR 117 (286)
Q Consensus 69 ~~~~~~~~~v~-------l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~ 117 (286)
.+.++.++++. +. ...++|||||| ||++||+.++.+++++|++++++|+
T Consensus 125 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~ 204 (257)
T 1g6h_A 125 PKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGI 204 (257)
T ss_dssp CCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCC
Confidence 12223233332 22 45679999999 9999999999999999999987899
Q ss_pred EEEEEEcCCCHHHHHHhhhHhhhcCCeeecccChhc
Q psy8953 118 TVVATIHTPSALLFEKFDSLYALAKGHCIYRGSISR 153 (286)
Q Consensus 118 tii~~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 153 (286)
|||+++|+++. +..++|++++|++|++++.|++++
T Consensus 205 tvi~vtHd~~~-~~~~~d~v~~l~~G~i~~~g~~~~ 239 (257)
T 1g6h_A 205 TFLIIEHRLDI-VLNYIDHLYVMFNGQIIAEGRGEE 239 (257)
T ss_dssp EEEEECSCCST-TGGGCSEEEEEETTEEEEEEESHH
T ss_pred EEEEEecCHHH-HHHhCCEEEEEECCEEEEEeCHHH
Confidence 99999999975 557899999999999999999888
No 27
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.91 E-value=3.1e-25 Score=187.68 Aligned_cols=148 Identities=18% Similarity=0.192 Sum_probs=120.8
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
|||||++ +|+.+.. |+|.++|+++...+...+++.+|||+|++.+++.+||+|++.|+...+ .+.+++.+.++
T Consensus 39 KSTLlk~l~Gl~~p~--G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~----~~~~~~~~~l~ 112 (249)
T 2qi9_C 39 KSTLLARMAGMTSGK--GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDK----TRTELLNDVAG 112 (249)
T ss_dssp HHHHHHHHTTSSCCE--EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHHHHHHTTCSST----TCHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCC--eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHHHHHHHhhccC----CcHHHHHHHHH
Confidence 8999999 9987654 999999999865434556678999999999999999999999874221 12333333333
Q ss_pred ---hh-----hhhcccCCccc--------------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcC
Q psy8953 80 ---LE-----LWNNFCKKKKK--------------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVATIHT 125 (286)
Q Consensus 80 ---l~-----~~~~~~gG~kq--------------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~ 125 (286)
+. ...++|||||| ||++||+.++..++++|++++++|+|||+++|+
T Consensus 113 ~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd 192 (249)
T 2qi9_C 113 ALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHD 192 (249)
T ss_dssp HTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSC
T ss_pred HcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 22 45679999999 899999999999999999998779999999999
Q ss_pred CCHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 126 PSALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 126 ~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
++ .+..++|++++|++|++++.|+++++.
T Consensus 193 ~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~ 221 (249)
T 2qi9_C 193 LN-HTLRHAHRAWLLKGGKMLASGRREEVL 221 (249)
T ss_dssp HH-HHHHHCSEEEEEETTEEEEEEEHHHHS
T ss_pred HH-HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 86 456789999999999999999887663
No 28
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.91 E-value=8.2e-25 Score=187.12 Aligned_cols=151 Identities=17% Similarity=0.181 Sum_probs=120.6
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCc-ccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDD-ALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQV 78 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~-~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v 78 (286)
|||||++ +|+.+. .+|+|.++|+++.. ..+++.+|||+|++ .+++.+||+|++.|++....+.....+++.+.+
T Consensus 46 KSTLl~~i~Gl~~p-~~G~I~~~g~~~~~---~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l 121 (266)
T 2yz2_A 46 KSTLLQIVAGLIEP-TSGDVLYDGERKKG---YEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAM 121 (266)
T ss_dssp HHHHHHHHTTSSCC-SEEEEEETTEECCH---HHHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHH
T ss_pred HHHHHHHHhCCCCC-CCcEEEECCEECch---HHhhhhEEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 8999999 997654 69999999998864 24567899999997 577889999999998753222111223333222
Q ss_pred h---h---h----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcCCCHH
Q psy8953 79 S---L---E----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVATIHTPSAL 129 (286)
Q Consensus 79 ~---l---~----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~~~~~ 129 (286)
+ | . ...++|||||| ||++||+.++..++++|++++++|+|||+++|+++.
T Consensus 122 ~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~- 200 (266)
T 2yz2_A 122 EFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIET- 200 (266)
T ss_dssp HHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTT-
T ss_pred HHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-
Confidence 2 2 2 34578999999 999999999999999999998779999999999974
Q ss_pred HHHHhhhHhhhcCCeeecccChhcHHH
Q psy8953 130 LFEKFDSLYALAKGHCIYRGSISRLVP 156 (286)
Q Consensus 130 ~~~~~d~v~~l~~G~i~~~g~~~~~~~ 156 (286)
+..++|++++|++|++++.|+++++..
T Consensus 201 ~~~~~d~v~~l~~G~i~~~g~~~~~~~ 227 (266)
T 2yz2_A 201 VINHVDRVVVLEKGKKVFDGTRMEFLE 227 (266)
T ss_dssp TGGGCSEEEEEETTEEEEEEEHHHHHH
T ss_pred HHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 556799999999999999999887754
No 29
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.91 E-value=3e-25 Score=215.30 Aligned_cols=175 Identities=21% Similarity=0.315 Sum_probs=120.1
Q ss_pred cCCCCCHHHHHHHHHhcCCCCCCCH----------HHHHHHHh------h-----h-hhhcccCCccc------------
Q psy8953 47 LRPKLTVTEAMMIASHLKLGFKVST----------QEKKDQVS------L-----E-LWNNFCKKKKK------------ 92 (286)
Q Consensus 47 ~~~~~tV~e~l~f~~~~~~~~~~~~----------~~~~~~v~------l-----~-~~~~~~gG~kq------------ 92 (286)
++..+||.|+++|...+.+ ++ +|+.+|++ | . ...+|||||+|
T Consensus 448 q~~~ltV~e~~~f~e~l~l----~~~~~~i~~~~~~ei~~Rl~~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~ 523 (972)
T 2r6f_A 448 EVTAMSVTEALAFFDGLEL----TEKEAQIARLILREIRDRLGFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRL 523 (972)
T ss_dssp HHHTSBHHHHHHHHHHCCC----CHHHHHHSHHHHHHHHHHHHHHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCC
T ss_pred HHhhCCHHHHHHHHHhcCC----CHHHHHHHHHHHHHHHHHHHHhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCC
Confidence 4578999999999655654 34 45666665 2 2 45789999999
Q ss_pred ---------cCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHhhhHhhh------cCCeeecccChhcHHHH
Q psy8953 93 ---------KKRGLDSSSCSQCVSLLANLAKQGRTVVATIHTPSALLFEKFDSLYAL------AKGHCIYRGSISRLVPH 157 (286)
Q Consensus 93 ---------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~~~~~~~~~~d~v~~l------~~G~i~~~g~~~~~~~~ 157 (286)
||++||+.....++++|++|++.|.|||+++|+++ .+ ..+|+|++| ++|++++.|+++++...
T Consensus 524 ~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~-~i-~~ADrIi~LgpgaG~~gG~iv~~G~~~e~~~~ 601 (972)
T 2r6f_A 524 TGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDED-TM-LAADYLIDIGPGAGIHGGEVVAAGTPEEVMND 601 (972)
T ss_dssp CSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHH-HH-HSCSEEEEECSSSGGGCCSEEEEECTTTTTTC
T ss_pred CCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HH-HhCCEEEEeCCCccCCCCEEEEecCHHHHHhh
Confidence 99999999999999999999888999999999985 34 579999999 78999999998876431
Q ss_pred HHhCCCCCCCCCCCCCccccccCCceeeeeccCchhhHHHHHHHHHHHhcCcceecCCccccccccccCCCCCCCCCCCC
Q psy8953 158 LASLGLPCPAYHNPADFPNLAKQGRTVVATIHTPSALLFEKFDSLYALAKGHCIYRGSISRLVPHLASLGLPCPAYHNPA 237 (286)
Q Consensus 158 ~~~~g~~~p~~~~~~~~~~~~~~g~tii~~~h~p~~~l~~~~d~~~~l~~g~~~~~g~~~~~~~~~~~~g~~~~~~~~~~ 237 (286)
+.. ....+. .+...+ ..|. . ..........++..
T Consensus 602 --------~~s-lt~~~l----~g~~~~---~~~~-----------------~--~~~~~~~~L~v~~l----------- 635 (972)
T 2r6f_A 602 --------PNS-LTGQYL----SGKKFI---PIPA-----------------E--RRRPDGRWLEVVGA----------- 635 (972)
T ss_dssp --------TTC-TTHHHH----HTSSCC---CCCS-----------------S--CCCCCSCEEEEEEE-----------
T ss_pred --------hHH-HHHHHh----cCCccc---cCcc-----------------c--cccccceEEEEecC-----------
Confidence 000 000000 000000 0000 0 00000000011111
Q ss_pred cccccccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHH
Q psy8953 238 DFLNKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILA 276 (286)
Q Consensus 238 ~~~~~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~ 276 (286)
....|+++||+|++||+++|+|+||||||||++.|+
T Consensus 636 ---~~~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll 671 (972)
T 2r6f_A 636 ---REHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 671 (972)
T ss_dssp ---CSSSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTH
T ss_pred ---cccccccceEEEcCCCEEEEEcCCCCCHHHHHHHHH
Confidence 123699999999999999999999999999999853
No 30
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.91 E-value=5.2e-25 Score=207.50 Aligned_cols=65 Identities=14% Similarity=0.090 Sum_probs=58.4
Q ss_pred hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHhhhHhhhcC
Q psy8953 82 LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVATIHTPSALLFEKFDSLYALAK 142 (286)
Q Consensus 82 ~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~~~~~~~~~~d~v~~l~~ 142 (286)
...++|||||| ||++||+.++.+++++|++|+++|.|||+++|+++ .+..++|++++|.+
T Consensus 218 ~~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~-~~~~~~drv~vl~~ 296 (608)
T 3j16_B 218 DIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLS-VLDYLSDFVCIIYG 296 (608)
T ss_dssp CTTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHH-HHHHHCSEEEEEES
T ss_pred ChHHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeC
Confidence 45779999999 99999999999999999999888999999999986 56788999999988
Q ss_pred Ceeec
Q psy8953 143 GHCIY 147 (286)
Q Consensus 143 G~i~~ 147 (286)
|..++
T Consensus 297 ~~~~~ 301 (608)
T 3j16_B 297 VPSVY 301 (608)
T ss_dssp CTTTE
T ss_pred Ccccc
Confidence 76554
No 31
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.90 E-value=1.2e-24 Score=188.99 Aligned_cols=146 Identities=19% Similarity=0.215 Sum_probs=119.4
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
||||+++ +|+... .+|+|++||+++...+...+++.+|||+|++.+|. .||+|+|.|+... ...+++.+..+
T Consensus 93 KSTLl~ll~gl~~p-~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~-~Tv~eNi~~~~~~-----~~~~~~~~~~~ 165 (306)
T 3nh6_A 93 KSTILRLLFRFYDI-SSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFN-DTIADNIRYGRVT-----AGNDEVEAAAQ 165 (306)
T ss_dssp HHHHHHHHTTSSCC-SEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCS-EEHHHHHHTTSTT-----CCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCC-CCcEEEECCEEcccCCHHHHhcceEEEecCCccCc-ccHHHHHHhhccc-----CCHHHHHHHHH
Confidence 8999999 996554 69999999999987666777889999999998774 5999999998642 23444433222
Q ss_pred ---hh-----h-----------hhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEE
Q psy8953 80 ---LE-----L-----------WNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVA 121 (286)
Q Consensus 80 ---l~-----~-----------~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~ 121 (286)
+. . ...+|||||| ||++||+.+...+++.|+++.+ ++|+|+
T Consensus 166 ~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~-~~Tvi~ 244 (306)
T 3nh6_A 166 AAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA-NRTTIV 244 (306)
T ss_dssp HHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT-TSEEEE
T ss_pred HhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC-CCEEEE
Confidence 11 1 1468999999 9999999999999999999965 689999
Q ss_pred EEcCCCHHHHHHhhhHhhhcCCeeecccChhcHHH
Q psy8953 122 TIHTPSALLFEKFDSLYALAKGHCIYRGSISRLVP 156 (286)
Q Consensus 122 ~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 156 (286)
++|+++. + ..+|+|++|++|+|+..|+++++..
T Consensus 245 itH~l~~-~-~~aD~i~vl~~G~iv~~G~~~el~~ 277 (306)
T 3nh6_A 245 VAHRLST-V-VNADQILVIKDGCIVERGRHEALLS 277 (306)
T ss_dssp ECCSHHH-H-HTCSEEEEEETTEEEEEECHHHHHH
T ss_pred EEcChHH-H-HcCCEEEEEECCEEEEECCHHHHHh
Confidence 9999864 4 4499999999999999999988764
No 32
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.90 E-value=1.4e-24 Score=184.08 Aligned_cols=151 Identities=20% Similarity=0.166 Sum_probs=111.6
Q ss_pred Cchhhhh-cCCC-CCCceeEEEECCeecCchhhhcc-cceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHH
Q psy8953 1 MSIELNV-QSIR-LTGSSGKILVNGQERKSACIEQF-LKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQ 77 (286)
Q Consensus 1 ~stll~~-~g~~-~~~~~G~i~~~g~~~~~~~~~~~-~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~ 77 (286)
||||+++ +|+. ....+|+|.++|+++...+.... ++.++||+|++.+++.+||+|++.|+.........+.++..++
T Consensus 42 KSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ 121 (250)
T 2d2e_A 42 KSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTK 121 (250)
T ss_dssp HHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHH
T ss_pred HHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHH
Confidence 8999999 9972 23479999999999864322222 3458999999999999999999999764210111223333333
Q ss_pred Hh-------h-h-----hhhc-ccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEEEc
Q psy8953 78 VS-------L-E-----LWNN-FCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVATIH 124 (286)
Q Consensus 78 v~-------l-~-----~~~~-~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h 124 (286)
+. + . ...+ +|||||| ||++||+.++..++++|++++++|+|||+++|
T Consensus 122 ~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtH 201 (250)
T 2d2e_A 122 VKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITH 201 (250)
T ss_dssp HHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECS
T ss_pred HHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 32 3 1 2345 9999999 99999999999999999999777999999999
Q ss_pred CCCHHHHHH-hhhHhhhcCCeeecccChh
Q psy8953 125 TPSALLFEK-FDSLYALAKGHCIYRGSIS 152 (286)
Q Consensus 125 ~~~~~~~~~-~d~v~~l~~G~i~~~g~~~ 152 (286)
+++. +... +|++++|++|++++.|+++
T Consensus 202 d~~~-~~~~~~d~v~~l~~G~i~~~g~~~ 229 (250)
T 2d2e_A 202 YQRI-LNYIQPDKVHVMMDGRVVATGGPE 229 (250)
T ss_dssp SSGG-GGTSCCSEEEEEETTEEEEEESHH
T ss_pred CHHH-HHHhcCCEEEEEECCEEEEEeCHH
Confidence 9864 4455 5999999999999999887
No 33
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.90 E-value=5.6e-24 Score=207.13 Aligned_cols=105 Identities=17% Similarity=0.269 Sum_probs=87.5
Q ss_pred ccCCCCCHHHHHHHHHhcCCCCCCCH----------HHHHHHHh------h-----h-hhhcccCCccc-----------
Q psy8953 46 ALRPKLTVTEAMMIASHLKLGFKVST----------QEKKDQVS------L-----E-LWNNFCKKKKK----------- 92 (286)
Q Consensus 46 ~~~~~~tV~e~l~f~~~~~~~~~~~~----------~~~~~~v~------l-----~-~~~~~~gG~kq----------- 92 (286)
.++..+||.|+++|...+++ +. +|+.+|++ | . ...+|||||+|
T Consensus 464 ~q~~~ltV~e~l~f~enl~l----~~~~~~i~~~i~~ei~~Rl~~L~~vGL~~l~l~r~~~tLSGGEkQRV~LA~aL~~~ 539 (993)
T 2ygr_A 464 AEVCELSIADCADFLNALTL----GPREQAIAGQVLKEIRSRLGFLLDVGLEYLSLSRAAATLSGGEAQRIRLATQIGSG 539 (993)
T ss_dssp GCSSHHHHHHHHHTTTTTTS----CHHHHHHHHHHHHHHHHHHHHHHHHTGGGSCTTCBGGGCCHHHHHHHHHHHHHTTC
T ss_pred HHHhhCCHHHHHHHHHhcCC----CHHHhHHHHHHHHHHHHHHHHHhhCCCCccccCCCcccCCHHHHHHHHHHHHHhhC
Confidence 47899999999999333443 45 56666665 2 2 45679999999
Q ss_pred ----------cCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHhhhHhhh------cCCeeecccChhcHHH
Q psy8953 93 ----------KKRGLDSSSCSQCVSLLANLAKQGRTVVATIHTPSALLFEKFDSLYAL------AKGHCIYRGSISRLVP 156 (286)
Q Consensus 93 ----------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~~~~~~~~~~d~v~~l------~~G~i~~~g~~~~~~~ 156 (286)
||++||+.....++++|++|.+.|.|||+++|+++ .+ ..+|+|++| .+|++++.|+++++..
T Consensus 540 ~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~-~i-~~ADrIi~Lgp~aG~~gG~iv~~G~~~e~~~ 617 (993)
T 2ygr_A 540 LVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDED-TI-EHADWIVDIGPGAGEHGGRIVHSGPYDELLR 617 (993)
T ss_dssp CCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HH-HTCSEEEEECSSSGGGCCSCCEEECHHHHHH
T ss_pred CCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCCHH-HH-HhCCEEEEecCccccCCCEEEEeeCHHHhhh
Confidence 99999999999999999999988999999999985 34 579999999 6899999999988764
No 34
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.89 E-value=4.6e-24 Score=180.49 Aligned_cols=145 Identities=18% Similarity=0.267 Sum_probs=116.3
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
|||||++ +|+.+. .+|+|+++|+++...+...+++.+|||+|++.+|+ .||+|++.|+.. ..+.+++.+.++
T Consensus 48 KSTLl~~l~Gl~~p-~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~-----~~~~~~~~~~l~ 120 (247)
T 2ff7_A 48 KSTLTKLIQRFYIP-ENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLN-RSIIDNISLANP-----GMSVEKVIYAAK 120 (247)
T ss_dssp HHHHHHHHTTSSCC-SEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTT-SBHHHHHTTTCT-----TCCHHHHHHHHH
T ss_pred HHHHHHHHhcCCCC-CCcEEEECCEEhhhCCHHHHHhcEEEEeCCCcccc-ccHHHHHhccCC-----CCCHHHHHHHHH
Confidence 8999999 997654 69999999999865434556678999999998776 599999998642 123444433222
Q ss_pred ---hh-----h-----------hhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEE
Q psy8953 80 ---LE-----L-----------WNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVA 121 (286)
Q Consensus 80 ---l~-----~-----------~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~ 121 (286)
+. . ...+|||||| ||++||+.++..++++|+++. +|+|||+
T Consensus 121 ~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~g~tvii 199 (247)
T 2ff7_A 121 LAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVII 199 (247)
T ss_dssp HHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEE
T ss_pred HhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEE
Confidence 21 1 2579999999 999999999999999999995 5999999
Q ss_pred EEcCCCHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 122 TIHTPSALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 122 ~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
++|+++. + ..+|++++|++|++++.|+++++.
T Consensus 200 vtH~~~~-~-~~~d~v~~l~~G~i~~~g~~~~l~ 231 (247)
T 2ff7_A 200 IAHRLST-V-KNADRIIVMEKGKIVEQGKHKELL 231 (247)
T ss_dssp ECSSGGG-G-TTSSEEEEEETTEEEEEECHHHHH
T ss_pred EeCCHHH-H-HhCCEEEEEECCEEEEECCHHHHH
Confidence 9999874 4 459999999999999999987764
No 35
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.89 E-value=7.9e-25 Score=188.20 Aligned_cols=153 Identities=15% Similarity=0.245 Sum_probs=115.8
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecC--chhhhcccceeeEEecCccc-C-CCCCHHHHHHHHHhcCCC-CCCCHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERK--SACIEQFLKLSCYIQQDDAL-R-PKLTVTEAMMIASHLKLG-FKVSTQEK 74 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~--~~~~~~~~~~~g~v~Q~~~~-~-~~~tV~e~l~f~~~~~~~-~~~~~~~~ 74 (286)
|||||++ +|+.+. .+|+|.++|+++. ..+...+++.+|||+|++.+ + +.+||+|++.|+...... .....++.
T Consensus 60 KSTLlk~l~Gl~~p-~~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~ 138 (279)
T 2ihy_A 60 KTTLLNILNAYEPA-TSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEI 138 (279)
T ss_dssp HHHHHHHHTTSSCC-SEEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHH
T ss_pred HHHHHHHHhCCCCC-CCeEEEECCEEcccccCCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHH
Confidence 8999999 997654 6899999999875 32234556789999999864 3 457999999986431100 01111222
Q ss_pred HHHHh-------hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEE--EE
Q psy8953 75 KDQVS-------LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTV--VA 121 (286)
Q Consensus 75 ~~~v~-------l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~ti--i~ 121 (286)
.+++. +. ...++|||||| ||++||+.++.+++++|++++++|+|| |+
T Consensus 139 ~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~ii 218 (279)
T 2ihy_A 139 RNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIY 218 (279)
T ss_dssp HHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEE
T ss_pred HHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEE
Confidence 22322 22 45679999999 999999999999999999998779999 99
Q ss_pred EEcCCCHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 122 TIHTPSALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 122 ~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
++|+++. +..++|++++|++|++++.|+++++.
T Consensus 219 vtHd~~~-~~~~~d~v~~l~~G~i~~~g~~~~~~ 251 (279)
T 2ihy_A 219 VTHFIEE-ITANFSKILLLKDGQSIQQGAVEDIL 251 (279)
T ss_dssp EESCGGG-CCTTCCEEEEEETTEEEEEEEHHHHC
T ss_pred EecCHHH-HHHhCCEEEEEECCEEEEECCHHHHh
Confidence 9999864 55779999999999999999987753
No 36
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.89 E-value=6.2e-25 Score=212.55 Aligned_cols=203 Identities=18% Similarity=0.233 Sum_probs=139.5
Q ss_pred cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcc-cCCCCC-------HHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 8 QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDA-LRPKLT-------VTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 8 ~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~-~~~~~t-------V~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
.|.+....+|+|+++|+++...........++++.|.+. +..+.| ...++++.. .+|+.+|++
T Consensus 291 ~G~Rl~~~~~~v~~~G~~I~~~~~~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i---------~~ei~~rl~ 361 (842)
T 2vf7_A 291 HGKRLRQEALNVTFAGLDITELSRLPLARVSELLRPYAEEREPGHAERVKNRPEQAIALQRM---------AADLVKRLD 361 (842)
T ss_dssp SSSCBCTTTTTCBBTTBCHHHHHHSBHHHHHHHHHHHHTTCSSCSTTSSSSCSSHHHHHHHH---------HHHHHHHHH
T ss_pred CCCccCHHHhhcccCCccHHHHhhcCHHHHHHHHHhhhhhhhhcccchhhcchhhHHHHHHH---------HHHHHHHHH
Confidence 355555688999999999976433445667777777653 333222 122333333 356666665
Q ss_pred ------h-----h-hhhcccCCccc---------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcCC
Q psy8953 80 ------L-----E-LWNNFCKKKKK---------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVATIHTP 126 (286)
Q Consensus 80 ------l-----~-~~~~~~gG~kq---------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~~ 126 (286)
| . ...++||||+| ||++||+..+..++.+|++|.+.|.|||+++|++
T Consensus 362 ~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl 441 (842)
T 2vf7_A 362 VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEHDL 441 (842)
T ss_dssp HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCH
T ss_pred HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEEEEEcCCH
Confidence 1 2 45679999999 9999999999999999999988899999999998
Q ss_pred CHHHHHHhhhHhhh------cCCeeecccChhcHHHH--------HHhCCCCCCCCCCCCCccccccCCceeeeeccCch
Q psy8953 127 SALLFEKFDSLYAL------AKGHCIYRGSISRLVPH--------LASLGLPCPAYHNPADFPNLAKQGRTVVATIHTPS 192 (286)
Q Consensus 127 ~~~~~~~~d~v~~l------~~G~i~~~g~~~~~~~~--------~~~~g~~~p~~~~~~~~~~~~~~g~tii~~~h~p~ 192 (286)
+ . ...+|+|++| .+|++++.|+++++... +. +.... .+. ....+
T Consensus 442 ~-~-l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~~~~~~~~~~~~l~--~~~~~---~~~----~~~~~----------- 499 (842)
T 2vf7_A 442 D-V-IRRADWLVDVGPEAGEKGGEILYSGPPEGLKHVPESQTGQYLF--ADRHT---EPH----TPREP----------- 499 (842)
T ss_dssp H-H-HTTCSEEEEECSSSGGGCCSEEEEECGGGGGGCTTCHHHHHHH--TCCCC---CCC----CCCCC-----------
T ss_pred H-H-HHhCCEEEEeCCCcccCCCEEEEecCHHHHHhchHHHHHHHhh--hcccc---ccc----ccCCC-----------
Confidence 5 3 4679999999 78999999998876431 10 00000 000 00000
Q ss_pred hhHHHHHHHHHHHhcCcceecCCccccccccccCCCCCCCCCCCCcccccccceeeeeEEeCCCEEEEEcCCCCcHHHHH
Q psy8953 193 ALLFEKFDSLYALAKGHCIYRGSISRLVPHLASLGLPCPAYHNPADFLNKEILHGISGEFKAGQLTAIMGPSGAGKSTLL 272 (286)
Q Consensus 193 ~~l~~~~d~~~~l~~g~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl 272 (286)
.....++.. ....|+++||+|++||+++|+|+||||||||+
T Consensus 500 -------------------------~~~L~v~~l--------------~~~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl 540 (842)
T 2vf7_A 500 -------------------------AGWLELNGV--------------TRNNLDNLDVRFPLGVMTSVTGVSGSGKSTLV 540 (842)
T ss_dssp -------------------------SCEEEEEEE--------------EETTEEEEEEEEESSSEEEEECCTTSSHHHHC
T ss_pred -------------------------CceEEEEee--------------eecccccceEEEcCCCEEEEEcCCCcCHHHHH
Confidence 000001111 11269999999999999999999999999999
Q ss_pred HH-HHcCCC
Q psy8953 273 NI-LAGLTY 280 (286)
Q Consensus 273 ~~-l~GL~~ 280 (286)
+. |+|+++
T Consensus 541 ~~~L~g~l~ 549 (842)
T 2vf7_A 541 SQALVDALA 549 (842)
T ss_dssp CCCCHHHHH
T ss_pred HHHHHHHHH
Confidence 97 777653
No 37
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.89 E-value=2.2e-24 Score=182.15 Aligned_cols=147 Identities=20% Similarity=0.283 Sum_probs=117.8
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
|||||++ +|+.+. .+|+|.++|+++...+...+++.+|||+|++.+|+ .||+|++.|++.. ..+.+++.+.++
T Consensus 41 KSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~----~~~~~~~~~~l~ 114 (243)
T 1mv5_A 41 KSTIFSLLERFYQP-TAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMA-GTIRENLTYGLEG----DYTDEDLWQVLD 114 (243)
T ss_dssp HHHHHHHHTTSSCC-SBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCC-EEHHHHTTSCTTS----CSCHHHHHHHHH
T ss_pred HHHHHHHHhcCCCC-CCcEEEECCEEhhhCCHHHHHhhEEEEcCCCcccc-ccHHHHHhhhccC----CCCHHHHHHHHH
Confidence 8999999 997654 68999999999865433456778999999998777 5999999986421 223444443332
Q ss_pred ---hh-h---------------hhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEE
Q psy8953 80 ---LE-L---------------WNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVA 121 (286)
Q Consensus 80 ---l~-~---------------~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~ 121 (286)
+. . ..++|||||| ||++||+.++..+++.|++++ +|+|||+
T Consensus 115 ~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~ 193 (243)
T 1mv5_A 115 LAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLV 193 (243)
T ss_dssp HHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEE
T ss_pred HhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc-CCCEEEE
Confidence 21 1 2479999999 999999999999999999998 6999999
Q ss_pred EEcCCCHHHHHHhhhHhhhcCCeeecccChhcHHH
Q psy8953 122 TIHTPSALLFEKFDSLYALAKGHCIYRGSISRLVP 156 (286)
Q Consensus 122 ~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 156 (286)
++|+++. + ..+|++++|++|++++.|+++++..
T Consensus 194 vtH~~~~-~-~~~d~v~~l~~G~i~~~g~~~~~~~ 226 (243)
T 1mv5_A 194 IAHRLST-I-VDADKIYFIEKGQITGSGKHNELVA 226 (243)
T ss_dssp ECCSHHH-H-HHCSEEEEEETTEECCCSCHHHHHH
T ss_pred EeCChHH-H-HhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999863 4 4699999999999999999887753
No 38
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.88 E-value=1e-23 Score=180.33 Aligned_cols=154 Identities=15% Similarity=0.093 Sum_probs=119.3
Q ss_pred Cchhhhh-cCCC-CCCceeEEEECCeecCchhhhcc-cceeeEEecCcccCCCCCHHHHHHHHHh-c----CCCCCCCHH
Q psy8953 1 MSIELNV-QSIR-LTGSSGKILVNGQERKSACIEQF-LKLSCYIQQDDALRPKLTVTEAMMIASH-L----KLGFKVSTQ 72 (286)
Q Consensus 1 ~stll~~-~g~~-~~~~~G~i~~~g~~~~~~~~~~~-~~~~g~v~Q~~~~~~~~tV~e~l~f~~~-~----~~~~~~~~~ 72 (286)
|||||++ +|+. ....+|+|+++|+++...+.... ++.+|||+|++.+++.+||.|++.+..+ + +.+ ..+.+
T Consensus 59 KSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~-~~~~~ 137 (267)
T 2zu0_C 59 KSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQE-TLDRF 137 (267)
T ss_dssp HHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCC-CCCHH
T ss_pred HHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccc-cCCHH
Confidence 8999999 9974 23479999999999854322222 3459999999999999999999998753 2 221 23344
Q ss_pred HHHHHHh-------hh------hhh-cccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEE
Q psy8953 73 EKKDQVS-------LE------LWN-NFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTV 119 (286)
Q Consensus 73 ~~~~~v~-------l~------~~~-~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~ti 119 (286)
+..+++. +. ... ++|||||| ||++||+.++..++++|++++++|+||
T Consensus 138 ~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv 217 (267)
T 2zu0_C 138 DFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSF 217 (267)
T ss_dssp HHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEE
T ss_pred HHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEE
Confidence 4444433 21 223 49999999 999999999999999999997779999
Q ss_pred EEEEcCCCHHHHHH-hhhHhhhcCCeeecccChhcHHH
Q psy8953 120 VATIHTPSALLFEK-FDSLYALAKGHCIYRGSISRLVP 156 (286)
Q Consensus 120 i~~~h~~~~~~~~~-~d~v~~l~~G~i~~~g~~~~~~~ 156 (286)
|+++|+++. +... +|++++|++|++++.|+++++..
T Consensus 218 iivtHd~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 254 (267)
T 2zu0_C 218 IIVTHYQRI-LDYIKPDYVHVLYQGRIVKSGDFTLVKQ 254 (267)
T ss_dssp EEECSSGGG-GGTSCCSEEEEEETTEEEEEECTTHHHH
T ss_pred EEEeeCHHH-HHhhcCCEEEEEECCEEEEEcCHHHHhh
Confidence 999999864 4344 89999999999999999887653
No 39
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.88 E-value=2.9e-24 Score=184.03 Aligned_cols=148 Identities=16% Similarity=0.166 Sum_probs=116.0
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHH---H
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKK---D 76 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~---~ 76 (286)
|||||++ +|+.+. .+|+|+++|+++...+...+++.+|||+|++.+|+ .||+|+|.|+... .. ..+++. +
T Consensus 58 KSTLlk~l~Gl~~p-~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~---~~-~~~~~~~~~~ 131 (271)
T 2ixe_A 58 KSTVAALLQNLYQP-TGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFG-RSFRENIAYGLTR---TP-TMEEITAVAM 131 (271)
T ss_dssp HHHHHHHHTTSSCC-SEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCS-SBHHHHHHTTCSS---CC-CHHHHHHHHH
T ss_pred HHHHHHHHhcCCCC-CCCEEEECCEEcccCCHHHHhccEEEEecCCcccc-ccHHHHHhhhccc---CC-hHHHHHHHHH
Confidence 8999999 997654 69999999999865333455678999999998877 5999999997532 11 112221 1
Q ss_pred H--Hh---------hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHh-CCCEEE
Q psy8953 77 Q--VS---------LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAK-QGRTVV 120 (286)
Q Consensus 77 ~--v~---------l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~-~g~tii 120 (286)
+ +. +. ...++|||||| ||++||+.++..++++|+++++ .|+|||
T Consensus 132 ~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tvi 211 (271)
T 2ixe_A 132 ESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVL 211 (271)
T ss_dssp HHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEE
T ss_pred HHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEE
Confidence 1 11 11 34578999999 9999999999999999999975 499999
Q ss_pred EEEcCCCHHHHHHhhhHhhhcCCeeecccChhcHHH
Q psy8953 121 ATIHTPSALLFEKFDSLYALAKGHCIYRGSISRLVP 156 (286)
Q Consensus 121 ~~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 156 (286)
+++|+++. + ..+|++++|++|+++..|+++++..
T Consensus 212 ivtHd~~~-~-~~~d~v~~l~~G~i~~~g~~~~l~~ 245 (271)
T 2ixe_A 212 LITQQLSL-A-ERAHHILFLKEGSVCEQGTHLQLME 245 (271)
T ss_dssp EECSCHHH-H-TTCSEEEEEETTEEEEEECHHHHHH
T ss_pred EEeCCHHH-H-HhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999864 4 4599999999999999999887753
No 40
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.88 E-value=1.1e-23 Score=179.57 Aligned_cols=145 Identities=17% Similarity=0.195 Sum_probs=116.4
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
|||||++ +|+.+ . +|+|+++|+++...+...+++.+|||+|++.+|+ .||+|++.|+.. ....+++.+.++
T Consensus 59 KSTLl~~l~Gl~~-~-~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~-----~~~~~~~~~~l~ 130 (260)
T 2ghi_A 59 KSTIAKLLYRFYD-A-EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFN-ETIKYNILYGKL-----DATDEEVIKATK 130 (260)
T ss_dssp HHHHHHHHTTSSC-C-EEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCS-EEHHHHHHTTCT-----TCCHHHHHHHHH
T ss_pred HHHHHHHHhccCC-C-CeEEEECCEEhhhcCHHHHhccEEEEcCCCcccc-cCHHHHHhccCC-----CCCHHHHHHHHH
Confidence 8999999 99865 3 8999999999865333456778999999998775 599999998632 123444444332
Q ss_pred ---hh----------------hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEE
Q psy8953 80 ---LE----------------LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVA 121 (286)
Q Consensus 80 ---l~----------------~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~ 121 (286)
+. ...++|||||| ||++||+.++..+++.|+++.+ |+|||+
T Consensus 131 ~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~-~~tvii 209 (260)
T 2ghi_A 131 SAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK-NRTLII 209 (260)
T ss_dssp HTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTT-TSEEEE
T ss_pred HhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcC-CCEEEE
Confidence 11 12478999999 9999999999999999999965 899999
Q ss_pred EEcCCCHHHHHHhhhHhhhcCCeeecccChhcHHH
Q psy8953 122 TIHTPSALLFEKFDSLYALAKGHCIYRGSISRLVP 156 (286)
Q Consensus 122 ~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 156 (286)
++|+++. + ..+|++++|++|+++..|+++++..
T Consensus 210 vtH~~~~-~-~~~d~i~~l~~G~i~~~g~~~~l~~ 242 (260)
T 2ghi_A 210 IAHRLST-I-SSAESIILLNKGKIVEKGTHKDLLK 242 (260)
T ss_dssp ECSSGGG-S-TTCSEEEEEETTEEEEEECHHHHHH
T ss_pred EcCCHHH-H-HhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999874 4 4599999999999999999887753
No 41
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.88 E-value=5.2e-23 Score=200.71 Aligned_cols=132 Identities=17% Similarity=0.290 Sum_probs=97.1
Q ss_pred hhhhcCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCC--CC----HHHHHHH
Q psy8953 4 ELNVQSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFK--VS----TQEKKDQ 77 (286)
Q Consensus 4 ll~~~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~--~~----~~~~~~~ 77 (286)
...|.|.+...-.++|+++|+++.. +..++|.|++.|...+.+... .. .+++.++
T Consensus 384 C~~C~g~rl~~~~~~V~i~G~~i~~-------------------~~~~~v~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~ 444 (916)
T 3pih_A 384 CSVCGGRRLNREALSVKINGLNIHE-------------------FTELSISEELEFLKNLNLTEREREIVGELLKEIEKR 444 (916)
T ss_dssp CTTTCSCCBCTTGGGEEETTEEHHH-------------------HHHSBHHHHHHHHHSCCCCTTTTTTHHHHHHHHHHH
T ss_pred chhcccccCChHhcCcEECCccHHH-------------------hhhCCHHHHHHHHHhccCcHHHHHHHHhhHHHHHHH
Confidence 3344455555688999999988743 234577777777554433211 00 1222333
Q ss_pred Hh------h-----h-hhhcccCCccc---------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEEEc
Q psy8953 78 VS------L-----E-LWNNFCKKKKK---------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVATIH 124 (286)
Q Consensus 78 v~------l-----~-~~~~~~gG~kq---------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h 124 (286)
++ | . ...++||||+| ||++||+..+.+++++|++|++.|.|||+++|
T Consensus 445 ~~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVtH 524 (916)
T 3pih_A 445 LEFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEH 524 (916)
T ss_dssp HHHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEECC
T ss_pred HHHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 22 2 2 45679999999 99999999999999999999888999999999
Q ss_pred CCCHHHHHHhhhHhhh------cCCeeecccChhcHHH
Q psy8953 125 TPSALLFEKFDSLYAL------AKGHCIYRGSISRLVP 156 (286)
Q Consensus 125 ~~~~~~~~~~d~v~~l------~~G~i~~~g~~~~~~~ 156 (286)
+++ .+ ..+|++++| ++|++++.|+++++..
T Consensus 525 d~~-~~-~~aD~ii~lgpgag~~~G~iv~~G~~~e~~~ 560 (916)
T 3pih_A 525 DEE-VI-RNADHIIDIGPGGGTNGGRVVFQGTVDELLK 560 (916)
T ss_dssp CHH-HH-HTCSEEEEEESSSGGGCSEEEEEECHHHHHH
T ss_pred CHH-HH-HhCCEEEEEcCCcccCCCEEEEeechhhhhc
Confidence 974 34 569999999 8999999999998764
No 42
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.87 E-value=9.8e-23 Score=192.56 Aligned_cols=147 Identities=18% Similarity=0.257 Sum_probs=120.1
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
||||+++ +|+.+. .+|+|++||+++...+...+++.+|||+|++.+|.. ||+|++.|+.. ...+.+++.+.++
T Consensus 382 KSTll~~l~g~~~p-~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~----~~~~~~~~~~~~~ 455 (582)
T 3b5x_A 382 KSTIANLFTRFYDV-DSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFND-TIANNIAYAAE----GEYTREQIEQAAR 455 (582)
T ss_pred HHHHHHHHhcCCCC-CCCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccc-cHHHHHhccCC----CCCCHHHHHHHHH
Confidence 8999999 996544 689999999998765556778899999999988874 99999999752 1234555554433
Q ss_pred ---hh-----h-----------hhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEE
Q psy8953 80 ---LE-----L-----------WNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVA 121 (286)
Q Consensus 80 ---l~-----~-----------~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~ 121 (286)
+. . ..++|||||| ||++||+.+...+.+.|+++.+ |+|+|+
T Consensus 456 ~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~ 534 (582)
T 3b5x_A 456 QAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQK-NKTVLV 534 (582)
T ss_pred HCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC-CCEEEE
Confidence 11 1 1468999999 9999999999999999999965 899999
Q ss_pred EEcCCCHHHHHHhhhHhhhcCCeeecccChhcHHH
Q psy8953 122 TIHTPSALLFEKFDSLYALAKGHCIYRGSISRLVP 156 (286)
Q Consensus 122 ~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 156 (286)
++|+++. + ..+|++++|++|+++..|+++++..
T Consensus 535 itH~~~~-~-~~~d~i~~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b5x_A 535 IAHRLST-I-EQADEILVVDEGEIIERGRHADLLA 567 (582)
T ss_pred EecCHHH-H-HhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999864 4 5699999999999999999887753
No 43
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.87 E-value=8.7e-24 Score=189.10 Aligned_cols=144 Identities=19% Similarity=0.119 Sum_probs=117.8
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
|||||++ +|+.+ .+|+|+++|+++...+...+++.+|||||++.+|+ .||+|++++... ...+++.+.++
T Consensus 60 KSTLLr~iaGl~~--~~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~-~tv~enl~~~~~------~~~~~v~~~l~ 130 (390)
T 3gd7_A 60 KSTLLSAFLRLLN--TEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFS-GTFRKNLDPNAA------HSDQEIWKVAD 130 (390)
T ss_dssp HHHHHHHHHTCSE--EEEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCS-EEHHHHHCTTCC------SCHHHHHHHHH
T ss_pred HHHHHHHHhCCCC--CCeEEEECCEECCcCChHHHhCCEEEEcCCcccCc-cCHHHHhhhccc------cCHHHHHHHHH
Confidence 8999999 99875 68999999999876555667789999999999887 599999975321 23444444333
Q ss_pred ---hh-----hhhc-----------ccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEE
Q psy8953 80 ---LE-----LWNN-----------FCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVA 121 (286)
Q Consensus 80 ---l~-----~~~~-----------~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~ 121 (286)
|. .++. +|||||| ||++||+..+.+++..|+++. .++|+|+
T Consensus 131 ~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~-~~~tvi~ 209 (390)
T 3gd7_A 131 EVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF-ADCTVIL 209 (390)
T ss_dssp HTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT-TTSCEEE
T ss_pred HhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEE
Confidence 22 3344 9999999 999999999999999999874 4799999
Q ss_pred EEcCCCHHHHHHhhhHhhhcCCeeecccChhcHHH
Q psy8953 122 TIHTPSALLFEKFDSLYALAKGHCIYRGSISRLVP 156 (286)
Q Consensus 122 ~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 156 (286)
++|+.+. + ..+||+++|++|+|+..|+++++..
T Consensus 210 vtHd~e~-~-~~aDri~vl~~G~i~~~g~~~el~~ 242 (390)
T 3gd7_A 210 CEARIEA-M-LECDQFLVIEENKVRQYDSILELYH 242 (390)
T ss_dssp ECSSSGG-G-TTCSEEEEEETTEEEEESSHHHHHH
T ss_pred EEcCHHH-H-HhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999853 3 5699999999999999999998863
No 44
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.87 E-value=1.4e-22 Score=191.90 Aligned_cols=149 Identities=17% Similarity=0.179 Sum_probs=119.6
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
||||+++ +|+.+. .+|+|++||+++...+...+++.+|||+|++.+|+ .||+|++.|+.... ...+.+++.+.++
T Consensus 383 KSTLl~~l~g~~~p-~~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~ 458 (595)
T 2yl4_A 383 KSTVLSLLLRLYDP-ASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFS-CSIAENIAYGADDP--SSVTAEEIQRVAE 458 (595)
T ss_dssp STHHHHHHTTSSCC-SEEEEEETTEETTTBCHHHHHHSEEEECSSCCCCS-SBHHHHHHTTSSST--TTSCHHHHHHHHH
T ss_pred HHHHHHHHhcCcCC-CCcEEEECCEEhhhCCHHHHHhceEEEccCCcccC-CCHHHHHhhcCCCc--cccCHHHHHHHHH
Confidence 8999999 997544 79999999999876555667788999999998886 59999999975421 1234566554433
Q ss_pred ---hh-----h-----------hhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEE
Q psy8953 80 ---LE-----L-----------WNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVA 121 (286)
Q Consensus 80 ---l~-----~-----------~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~ 121 (286)
+. . ...+|||||| ||++||+.+...+.+.|+++.+ |+|+|+
T Consensus 459 ~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~ 537 (595)
T 2yl4_A 459 VANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-GRTVLV 537 (595)
T ss_dssp HTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHT-TSEEEE
T ss_pred HcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhc-CCEEEE
Confidence 11 1 1568999999 9999999999999999999977 899999
Q ss_pred EEcCCCHHHHHHhhhHhhhcCCeeecccChhcHHH
Q psy8953 122 TIHTPSALLFEKFDSLYALAKGHCIYRGSISRLVP 156 (286)
Q Consensus 122 ~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 156 (286)
++|+++. + ..+|++++|++|+++..|+++++..
T Consensus 538 itH~~~~-~-~~~d~i~~l~~G~i~~~g~~~~l~~ 570 (595)
T 2yl4_A 538 IAHRLST-I-KNANMVAVLDQGKITEYGKHEELLS 570 (595)
T ss_dssp ECCCHHH-H-HHSSEEEEEETTEEEEEECSCC---
T ss_pred EecCHHH-H-HcCCEEEEEECCEEEEECCHHHHHh
Confidence 9999864 4 5699999999999999999888753
No 45
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.87 E-value=1.8e-22 Score=171.27 Aligned_cols=139 Identities=19% Similarity=0.228 Sum_probs=109.6
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCC-CCCCHHHHHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLG-FKVSTQEKKDQV 78 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~-~~~~~~~~~~~v 78 (286)
|||||++ +|+.+. .+|+|. +++.+|||+|++.+++.+||+|++.|+...... ...+.++.++++
T Consensus 44 KSTLl~~l~Gl~~p-~~G~I~-------------~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~ 109 (253)
T 2nq2_C 44 KSTLLDLLLGIHRP-IQGKIE-------------VYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVA 109 (253)
T ss_dssp HHHHHHHHTTSSCC-SEEEEE-------------ECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHH
T ss_pred HHHHHHHHhCCCCC-CCcEEE-------------EeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHH
Confidence 8999999 997654 689998 235699999999988999999999998642211 001112222222
Q ss_pred h-------hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC-CCEEEEEEcCC
Q psy8953 79 S-------LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ-GRTVVATIHTP 126 (286)
Q Consensus 79 ~-------l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~-g~tii~~~h~~ 126 (286)
. +. ...++|||||| ||++||+.++.+++++|++++++ |+|||+++|++
T Consensus 110 ~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~ 189 (253)
T 2nq2_C 110 MQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQP 189 (253)
T ss_dssp HHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCH
T ss_pred HHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 2 22 45679999999 99999999999999999999887 99999999998
Q ss_pred CHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 127 SALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 127 ~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
+ .+...+|++++|++|+ ++.|+++++.
T Consensus 190 ~-~~~~~~d~v~~l~~G~-~~~g~~~~~~ 216 (253)
T 2nq2_C 190 N-QVVAIANKTLLLNKQN-FKFGETRNIL 216 (253)
T ss_dssp H-HHHHHCSEEEEEETTE-EEEEEHHHHC
T ss_pred H-HHHHhCCEEEEEeCCe-EecCCHHHHh
Confidence 6 4567899999999999 9999887753
No 46
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.87 E-value=1.6e-22 Score=191.49 Aligned_cols=146 Identities=16% Similarity=0.243 Sum_probs=120.2
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
||||+++ +|+.+. .+|+|.+||+++...+...+++.+|||+|||.+|. .||+|++.|+.. ..+.+++.+.++
T Consensus 394 KSTll~~l~g~~~p-~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~tv~eni~~~~~-----~~~~~~~~~~~~ 466 (598)
T 3qf4_B 394 KTTIVNLLMRFYDV-DRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFS-TTVKENLKYGNP-----GATDEEIKEAAK 466 (598)
T ss_dssp TTHHHHHHTTSSCC-SEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCS-SBHHHHHHSSST-----TCCTTHHHHHTT
T ss_pred HHHHHHHHhcCcCC-CCeEEEECCEEhhhCCHHHHHhceEEEeCCCcccc-ccHHHHHhcCCC-----CCCHHHHHHHHH
Confidence 8999999 996554 69999999999987666778889999999998775 599999998632 223444444332
Q ss_pred -------hh------------hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEE
Q psy8953 80 -------LE------------LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVA 121 (286)
Q Consensus 80 -------l~------------~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~ 121 (286)
+. ....+|||||| ||++||+.+..++.+.|+++. +|+|+|+
T Consensus 467 ~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~ 545 (598)
T 3qf4_B 467 LTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM-EGKTSII 545 (598)
T ss_dssp TTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH-TTSEEEE
T ss_pred HhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc-CCCEEEE
Confidence 11 12468999999 999999999999999999996 4899999
Q ss_pred EEcCCCHHHHHHhhhHhhhcCCeeecccChhcHHH
Q psy8953 122 TIHTPSALLFEKFDSLYALAKGHCIYRGSISRLVP 156 (286)
Q Consensus 122 ~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 156 (286)
++|+++. + ..+|++++|++|+++..|+++++..
T Consensus 546 itH~l~~-~-~~~d~i~~l~~G~i~~~g~~~~l~~ 578 (598)
T 3qf4_B 546 IAHRLNT-I-KNADLIIVLRDGEIVEMGKHDELIQ 578 (598)
T ss_dssp ESCCTTH-H-HHCSEEEEECSSSEEECSCHHHHHH
T ss_pred EecCHHH-H-HcCCEEEEEECCEEEEECCHHHHHh
Confidence 9999985 4 4599999999999999999988764
No 47
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.87 E-value=1.2e-22 Score=192.05 Aligned_cols=147 Identities=19% Similarity=0.243 Sum_probs=120.9
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
||||+++ +|+.+. .+|+|++||+++...+...+++.+|||+|+|.+|+. ||+|++.|+.. ...+.+++.+.++
T Consensus 382 KSTLl~~l~g~~~p-~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~----~~~~~~~~~~~l~ 455 (582)
T 3b60_A 382 KSTIASLITRFYDI-DEGHILMDGHDLREYTLASLRNQVALVSQNVHLFND-TVANNIAYART----EEYSREQIEEAAR 455 (582)
T ss_dssp HHHHHHHHTTTTCC-SEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSS-BHHHHHHTTTT----SCCCHHHHHHHHH
T ss_pred HHHHHHHHhhccCC-CCCeEEECCEEccccCHHHHHhhCeEEccCCcCCCC-CHHHHHhccCC----CCCCHHHHHHHHH
Confidence 8999999 997544 689999999998765556677899999999988875 99999999752 1234565554433
Q ss_pred ---hh-----h-----------hhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEE
Q psy8953 80 ---LE-----L-----------WNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVA 121 (286)
Q Consensus 80 ---l~-----~-----------~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~ 121 (286)
+. . ...+|||||| ||++||+.+..++.+.|+++.+ |+|+|+
T Consensus 456 ~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~ 534 (582)
T 3b60_A 456 MAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLV 534 (582)
T ss_dssp TTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEE
T ss_pred HcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEE
Confidence 11 1 1468999999 9999999999999999999976 899999
Q ss_pred EEcCCCHHHHHHhhhHhhhcCCeeecccChhcHHH
Q psy8953 122 TIHTPSALLFEKFDSLYALAKGHCIYRGSISRLVP 156 (286)
Q Consensus 122 ~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 156 (286)
++|+++. + ..+|++++|++|+++..|+++++..
T Consensus 535 itH~~~~-~-~~~d~i~~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b60_A 535 IAHRLST-I-EQADEIVVVEDGIIVERGTHSELLA 567 (582)
T ss_dssp ECSCGGG-T-TTCSEEEEEETTEEEEEECHHHHHH
T ss_pred EeccHHH-H-HhCCEEEEEECCEEEEecCHHHHHH
Confidence 9999974 4 5699999999999999999988764
No 48
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.86 E-value=1.5e-22 Score=172.41 Aligned_cols=141 Identities=16% Similarity=0.146 Sum_probs=115.3
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceee-EEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSC-YIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQV 78 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g-~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v 78 (286)
|||||++ +|+. ..+|+|.++|+++... .. ++.+| ||+|++.+ .+||+|++.|+.++. ....++..+.+
T Consensus 43 KSTLlk~l~Gl~--p~~G~I~~~g~~~~~~--~~-~~~i~~~v~Q~~~l--~~tv~enl~~~~~~~---~~~~~~~~~~l 112 (263)
T 2pjz_A 43 KTTLLRAISGLL--PYSGNIFINGMEVRKI--RN-YIRYSTNLPEAYEI--GVTVNDIVYLYEELK---GLDRDLFLEML 112 (263)
T ss_dssp HHHHHHHHTTSS--CCEEEEEETTEEGGGC--SC-CTTEEECCGGGSCT--TSBHHHHHHHHHHHT---CCCHHHHHHHH
T ss_pred HHHHHHHHhCCC--CCCcEEEECCEECcch--HH-hhheEEEeCCCCcc--CCcHHHHHHHhhhhc---chHHHHHHHHH
Confidence 8999999 9977 4799999999987642 22 56799 99999877 999999999987643 22344444433
Q ss_pred h---h--h----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcCCCHHH
Q psy8953 79 S---L--E----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVATIHTPSALL 130 (286)
Q Consensus 79 ~---l--~----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~~~~~~ 130 (286)
+ + . ...++|||||| ||++||+.++..+++.|+++++ |||+++|+++. +
T Consensus 113 ~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~---tviivtHd~~~-~ 188 (263)
T 2pjz_A 113 KALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK---EGILVTHELDM-L 188 (263)
T ss_dssp HHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS---EEEEEESCGGG-G
T ss_pred HHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC---cEEEEEcCHHH-H
Confidence 3 2 1 34579999999 9999999999999999998865 99999999864 5
Q ss_pred HHHhh-hHhhhcCCeeecccChhcHH
Q psy8953 131 FEKFD-SLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 131 ~~~~d-~v~~l~~G~i~~~g~~~~~~ 155 (286)
..++| ++++|++|++++.|+++++.
T Consensus 189 ~~~~d~~i~~l~~G~i~~~g~~~~l~ 214 (263)
T 2pjz_A 189 NLYKEYKAYFLVGNRLQGPISVSELL 214 (263)
T ss_dssp GGCTTSEEEEEETTEEEEEEEHHHHH
T ss_pred HHhcCceEEEEECCEEEEecCHHHHH
Confidence 57799 99999999999999988775
No 49
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.86 E-value=1e-22 Score=192.44 Aligned_cols=146 Identities=14% Similarity=0.167 Sum_probs=120.1
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
||||+++ +|+.+. .+|+|++||+++...+...+++.+|||+|++.+|.. ||+|++.|+.. ..+.+++.+..+
T Consensus 382 KSTll~~l~g~~~~-~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-tv~eni~~~~~-----~~~~~~~~~~~~ 454 (587)
T 3qf4_A 382 KSTLMNLIPRLIDP-ERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSG-TIKENLKWGRE-----DATDDEIVEAAK 454 (587)
T ss_dssp HHHHHHTTTTSSCC-SEEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSE-EHHHHHTTTCS-----SCCHHHHHHHHH
T ss_pred HHHHHHHHhCCccC-CCcEEEECCEEcccCCHHHHHhheEEECCCCcCcCc-cHHHHHhccCC-----CCCHHHHHHHHH
Confidence 8999999 996554 799999999999876667778899999999988865 99999998753 123454443322
Q ss_pred --------------hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEE
Q psy8953 80 --------------LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVA 121 (286)
Q Consensus 80 --------------l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~ 121 (286)
++ ....+|||||| ||++||+.+..++.+.|+++. +|+|+|+
T Consensus 455 ~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~ 533 (587)
T 3qf4_A 455 IAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT-KGCTTFI 533 (587)
T ss_dssp HTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS-TTCEEEE
T ss_pred HhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC-CCCEEEE
Confidence 11 12468899999 999999999999999999985 4899999
Q ss_pred EEcCCCHHHHHHhhhHhhhcCCeeecccChhcHHH
Q psy8953 122 TIHTPSALLFEKFDSLYALAKGHCIYRGSISRLVP 156 (286)
Q Consensus 122 ~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 156 (286)
++|+++. + ..+|++++|++|+++..|+++++..
T Consensus 534 itH~l~~-~-~~~d~i~vl~~G~i~~~g~~~el~~ 566 (587)
T 3qf4_A 534 ITQKIPT-A-LLADKILVLHEGKVAGFGTHKELLE 566 (587)
T ss_dssp EESCHHH-H-TTSSEEEEEETTEEEEEECHHHHHH
T ss_pred EecChHH-H-HhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999864 4 5799999999999999999998764
No 50
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.86 E-value=2.1e-22 Score=190.15 Aligned_cols=146 Identities=23% Similarity=0.292 Sum_probs=120.2
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
||||+++ +|+.+. .+|+|.+||+++...+...+++.+|||+|++.+|.. ||+|++.|+.. ..+.+++.+..+
T Consensus 380 KSTll~~l~g~~~p-~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~-tv~eni~~~~~-----~~~~~~~~~~~~ 452 (578)
T 4a82_A 380 KSTLINLIPRFYDV-TSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSD-TVKENILLGRP-----TATDEEVVEAAK 452 (578)
T ss_dssp HHHHHTTTTTSSCC-SEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSS-BHHHHHGGGCS-----SCCHHHHHHHHH
T ss_pred HHHHHHHHhcCCCC-CCcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcc-cHHHHHhcCCC-----CCCHHHHHHHHH
Confidence 8999999 997554 699999999999876667778899999999988866 99999998742 123455544333
Q ss_pred -------hh------------hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEE
Q psy8953 80 -------LE------------LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVA 121 (286)
Q Consensus 80 -------l~------------~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~ 121 (286)
+. ....+|||||| ||++||+.+...+.+.|+++.+ ++|+|+
T Consensus 453 ~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~t~i~ 531 (578)
T 4a82_A 453 MANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK-DRTTLI 531 (578)
T ss_dssp HTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEE
T ss_pred HhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC-CCEEEE
Confidence 11 11368999999 9999999999999999999854 789999
Q ss_pred EEcCCCHHHHHHhhhHhhhcCCeeecccChhcHHH
Q psy8953 122 TIHTPSALLFEKFDSLYALAKGHCIYRGSISRLVP 156 (286)
Q Consensus 122 ~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 156 (286)
++|+++. + ..+|++++|++|+++..|+++++..
T Consensus 532 itH~l~~-~-~~~d~i~~l~~G~i~~~g~~~el~~ 564 (578)
T 4a82_A 532 VAHRLST-I-THADKIVVIENGHIVETGTHRELIA 564 (578)
T ss_dssp ECSSGGG-T-TTCSEEEEEETTEEEEEECHHHHHH
T ss_pred EecCHHH-H-HcCCEEEEEECCEEEEECCHHHHHh
Confidence 9999975 4 4599999999999999999998764
No 51
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.86 E-value=5.4e-22 Score=163.94 Aligned_cols=133 Identities=13% Similarity=0.149 Sum_probs=105.5
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
|||||++ +|+.+. .+|+|.+||+++. .+++.+|||+|++.+++.+||+|++.|++++.-. ....++..+.++
T Consensus 48 KSTLlk~l~Gl~~p-~~G~I~~~g~~~~-----~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~l~ 120 (214)
T 1sgw_A 48 KTTLLKTISTYLKP-LKGEIIYNGVPIT-----KVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGV-KVNKNEIMDALE 120 (214)
T ss_dssp HHHHHHHHTTSSCC-SEEEEEETTEEGG-----GGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTC-CCCHHHHHHHHH
T ss_pred HHHHHHHHhcCCCC-CCeEEEECCEEhh-----hhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCC-chHHHHHHHHHH
Confidence 8999999 997544 6999999999874 2467899999999999999999999998764211 122333333333
Q ss_pred ---hh----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHH
Q psy8953 80 ---LE----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVATIHTPSALLFEK 133 (286)
Q Consensus 80 ---l~----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~~~~~~~~~ 133 (286)
+. ...++|||||| ||++||+.++.++++.|++++++|+|||+++|+++. +..+
T Consensus 121 ~~gl~~~~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~-~~~~ 199 (214)
T 1sgw_A 121 SVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELS-YCDV 199 (214)
T ss_dssp HTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCT-TSSE
T ss_pred HcCCCcCCCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HHHh
Confidence 32 34568999999 999999999999999999998778999999999975 5577
Q ss_pred hhhHhhhc
Q psy8953 134 FDSLYALA 141 (286)
Q Consensus 134 ~d~v~~l~ 141 (286)
+|++++++
T Consensus 200 ~d~v~~~~ 207 (214)
T 1sgw_A 200 NENLHKYS 207 (214)
T ss_dssp EEEGGGGB
T ss_pred CCEEEEeC
Confidence 88877554
No 52
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.83 E-value=7.5e-22 Score=201.16 Aligned_cols=148 Identities=18% Similarity=0.252 Sum_probs=124.9
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
||||+++ .|+... .+|+|+|||+++.+.+.+.+++.+|||+|||.+|.. |++|||+|+.. |...+.+|+.+-.+
T Consensus 1118 KSTL~~lL~rl~~p-~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~g-TIreNI~~gld---~~~~sd~ei~~Al~ 1192 (1321)
T 4f4c_A 1118 KSTVVALLERFYDT-LGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDC-SIAENIIYGLD---PSSVTMAQVEEAAR 1192 (1321)
T ss_dssp TTSHHHHHTTSSCC-SSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSE-EHHHHHSSSSC---TTTSCHHHHHHHHH
T ss_pred HHHHHHHHhcCccC-CCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCc-cHHHHHhccCC---CCCCCHHHHHHHHH
Confidence 8999999 986543 789999999999988889999999999999998855 99999999865 34567788765444
Q ss_pred --------------hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEE
Q psy8953 80 --------------LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVA 121 (286)
Q Consensus 80 --------------l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~ 121 (286)
++ .-..+|||||| |||+||+.+-..+.+.|+++.+ |+|+|+
T Consensus 1193 ~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~-~~TvI~ 1271 (1321)
T 4f4c_A 1193 LANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRARE-GRTCIV 1271 (1321)
T ss_dssp HTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSS-SSEEEE
T ss_pred HhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHcC-CCEEEE
Confidence 11 11347899999 9999999999999999987654 889999
Q ss_pred EEcCCCHHHHHHhhhHhhhcCCeeecccChhcHHH
Q psy8953 122 TIHTPSALLFEKFDSLYALAKGHCIYRGSISRLVP 156 (286)
Q Consensus 122 ~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 156 (286)
+.||++. + ..+|+|+||++|+|+..|++++++.
T Consensus 1272 IAHRLsT-i-~~aD~I~Vld~G~IvE~Gth~eLl~ 1304 (1321)
T 4f4c_A 1272 IAHRLNT-V-MNADCIAVVSNGTIIEKGTHTQLMS 1304 (1321)
T ss_dssp ECSSSST-T-TTCSEEEEESSSSEEEEECHHHHHH
T ss_pred eccCHHH-H-HhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999985 4 5599999999999999999999875
No 53
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.81 E-value=8.2e-21 Score=158.81 Aligned_cols=134 Identities=16% Similarity=0.174 Sum_probs=102.9
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
|||||++ +|+.+. .+|+|.++| .+|||+|++.+++. ||+|++.|+... . .....+..+...
T Consensus 47 KSTLl~~l~Gl~~p-~~G~i~~~g-------------~i~~v~q~~~~~~~-tv~enl~~~~~~--~-~~~~~~~~~~~~ 108 (229)
T 2pze_A 47 KTSLLMMIMGELEP-SEGKIKHSG-------------RISFCSQFSWIMPG-TIKENIIFGVSY--D-EYRYRSVIKACQ 108 (229)
T ss_dssp HHHHHHHHTTSSCC-SEEEEEECS-------------CEEEECSSCCCCSB-CHHHHHHTTSCC--C-HHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCcC-CccEEEECC-------------EEEEEecCCcccCC-CHHHHhhccCCc--C-hHHHHHHHHHhC
Confidence 8999999 997654 699999998 28999999988875 999999986431 0 000111112211
Q ss_pred ----hh-h-----------hhcccCCccc-------------------cCCCcchHHHHHHHHH-HHHHHhCCCEEEEEE
Q psy8953 80 ----LE-L-----------WNNFCKKKKK-------------------KKRGLDSSSCSQCVSL-LANLAKQGRTVVATI 123 (286)
Q Consensus 80 ----l~-~-----------~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~-l~~l~~~g~tii~~~ 123 (286)
+. . ..++|||||| ||++||+.++..+++. ++.+. .|+|||+++
T Consensus 109 l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~-~~~tvi~vt 187 (229)
T 2pze_A 109 LEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVT 187 (229)
T ss_dssp CHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT-TTSEEEEEC
T ss_pred cHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh-CCCEEEEEc
Confidence 11 1 1579999999 9999999999999996 46664 389999999
Q ss_pred cCCCHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 124 HTPSALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 124 h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
|+++. + ..+|++++|++|++++.|+++++.
T Consensus 188 H~~~~-~-~~~d~v~~l~~G~i~~~g~~~~~~ 217 (229)
T 2pze_A 188 SKMEH-L-KKADKILILHEGSSYFYGTFSELQ 217 (229)
T ss_dssp CCHHH-H-HHCSEEEEEETTEEEEEECHHHHH
T ss_pred CChHH-H-HhCCEEEEEECCEEEEECCHHHHH
Confidence 99854 4 459999999999999999987764
No 54
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.81 E-value=4.2e-21 Score=161.38 Aligned_cols=135 Identities=16% Similarity=0.183 Sum_probs=105.2
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
|||||++ +|+.+. .+|+|.++| .+|||+|++. ++.+||+|++.|+... . ....++..+.+.
T Consensus 44 KSTLl~~l~Gl~~p-~~G~I~~~g-------------~i~~v~Q~~~-~~~~tv~enl~~~~~~--~-~~~~~~~~~~~~ 105 (237)
T 2cbz_A 44 KSSLLSALLAEMDK-VEGHVAIKG-------------SVAYVPQQAW-IQNDSLRENILFGCQL--E-EPYYRSVIQACA 105 (237)
T ss_dssp HHHHHHHHTTCSEE-EEEEEEECS-------------CEEEECSSCC-CCSEEHHHHHHTTSCC--C-TTHHHHHHHHTT
T ss_pred HHHHHHHHhcCCCC-CCceEEECC-------------EEEEEcCCCc-CCCcCHHHHhhCcccc--C-HHHHHHHHHHHh
Confidence 8999999 997654 699999998 2899999986 4688999999997542 1 111122222222
Q ss_pred h---------------h-hhhcccCCccc-------------------cCCCcchHHHHHHHHHHH---HHHhCCCEEEE
Q psy8953 80 L---------------E-LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLA---NLAKQGRTVVA 121 (286)
Q Consensus 80 l---------------~-~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~---~l~~~g~tii~ 121 (286)
+ . ....+|||||| ||++||+.++..+++.|. .+. +|+|||+
T Consensus 106 l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~-~~~tvii 184 (237)
T 2cbz_A 106 LLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML-KNKTRIL 184 (237)
T ss_dssp CHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT-TTSEEEE
T ss_pred hHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc-CCCEEEE
Confidence 1 1 23568999999 999999999999999995 443 4899999
Q ss_pred EEcCCCHHHHHHhhhHhhhcCCeeecccChhcHHH
Q psy8953 122 TIHTPSALLFEKFDSLYALAKGHCIYRGSISRLVP 156 (286)
Q Consensus 122 ~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 156 (286)
++|+++. + ..+|++++|++|++++.|+++++..
T Consensus 185 vtH~~~~-~-~~~d~v~~l~~G~i~~~g~~~~~~~ 217 (237)
T 2cbz_A 185 VTHSMSY-L-PQVDVIIVMSGGKISEMGSYQELLA 217 (237)
T ss_dssp ECSCSTT-G-GGSSEEEEEETTEEEEEECHHHHHH
T ss_pred EecChHH-H-HhCCEEEEEeCCEEEEeCCHHHHhh
Confidence 9999975 4 4699999999999999999887653
No 55
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.79 E-value=2.1e-20 Score=190.55 Aligned_cols=145 Identities=20% Similarity=0.257 Sum_probs=121.9
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
||||++. .|.... .+|+|++||+++...+...+++.+|||+|+|.+| +.||+|||.|+.+ ..+.+++.+-++
T Consensus 457 KSTll~ll~~~~~~-~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf-~~TI~eNI~~g~~-----~~~~~~v~~a~~ 529 (1321)
T 4f4c_A 457 KSTIISLLLRYYDV-LKGKITIDGVDVRDINLEFLRKNVAVVSQEPALF-NCTIEENISLGKE-----GITREEMVAACK 529 (1321)
T ss_dssp HHHHHHHHTTSSCC-SEEEEEETTEETTTSCHHHHHHHEEEECSSCCCC-SEEHHHHHHTTCT-----TCCHHHHHHHHH
T ss_pred HHHHHHHhcccccc-ccCcccCCCccchhccHHHHhhcccccCCcceee-CCchhHHHhhhcc-----cchHHHHHHHHH
Confidence 8999999 996544 8999999999999887888899999999999766 5699999999853 245777665444
Q ss_pred -------hh------------hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEE
Q psy8953 80 -------LE------------LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVA 121 (286)
Q Consensus 80 -------l~------------~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~ 121 (286)
+. ....+|||||| |||.||+.+...+.+.|+++.+ |+|+|+
T Consensus 530 ~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~-~~T~ii 608 (1321)
T 4f4c_A 530 MANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAK-GRTTII 608 (1321)
T ss_dssp HTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHT-TSEEEE
T ss_pred HccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhC-CCEEEE
Confidence 11 11357899999 9999999999999999998865 899999
Q ss_pred EEcCCCHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 122 TIHTPSALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 122 ~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
+.|+++. + ..+|+|++|++|+|+..|+.+++.
T Consensus 609 iaHrls~-i-~~aD~Iivl~~G~ive~Gth~eL~ 640 (1321)
T 4f4c_A 609 IAHRLST-I-RNADLIISCKNGQVVEVGDHRALM 640 (1321)
T ss_dssp ECSCTTT-T-TTCSEEEEEETTEEEEEECHHHHH
T ss_pred EcccHHH-H-HhCCEEEEeeCCeeeccCCHHHHH
Confidence 9999974 3 679999999999999999988864
No 56
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.79 E-value=2.3e-20 Score=189.90 Aligned_cols=148 Identities=18% Similarity=0.247 Sum_probs=121.4
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
||||+++ +|+.+. .+|+|++||+++...+.+.+++.+|||+|||.+| ..||+|+|+++... ...+.+++.+..+
T Consensus 1072 KSTl~~~l~g~~~p-~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~ti~eNi~~~~~~---~~~~~~~i~~~~~ 1146 (1284)
T 3g5u_A 1072 KSTVVQLLERFYDP-MAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILF-DCSIAENIAYGDNS---RVVSYEEIVRAAK 1146 (1284)
T ss_dssp HHHHHHHHTTSSCC-SEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCC-SSBHHHHHTCCCSS---CCCCHHHHHHHHH
T ss_pred HHHHHHHHhcCcCC-CCCEEEECCEEcccCCHHHHHhceEEECCCCccc-cccHHHHHhccCCC---CCCCHHHHHHHHH
Confidence 8999999 996554 7999999999998766677889999999999765 57999999987642 2345666654433
Q ss_pred -------hh-h-----------hhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEE
Q psy8953 80 -------LE-L-----------WNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVA 121 (286)
Q Consensus 80 -------l~-~-----------~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~ 121 (286)
+. . ...+|||||| ||++||+.+...+.+.|+++. .|+|+|+
T Consensus 1147 ~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~-~~~tvi~ 1225 (1284)
T 3g5u_A 1147 EANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAR-EGRTCIV 1225 (1284)
T ss_dssp HHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHS-SSSCEEE
T ss_pred HhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhC-CCCEEEE
Confidence 11 1 1358899999 999999999999999998854 4899999
Q ss_pred EEcCCCHHHHHHhhhHhhhcCCeeecccChhcHHH
Q psy8953 122 TIHTPSALLFEKFDSLYALAKGHCIYRGSISRLVP 156 (286)
Q Consensus 122 ~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 156 (286)
+.|+++. + ..+|||++|++|+++..|+++++..
T Consensus 1226 isH~l~~-i-~~~dri~vl~~G~i~~~g~~~~l~~ 1258 (1284)
T 3g5u_A 1226 IAHRLST-I-QNADLIVVIQNGKVKEHGTHQQLLA 1258 (1284)
T ss_dssp ECSCTTG-G-GSCSEEEEEETBEEEEEECHHHHHH
T ss_pred EecCHHH-H-HcCCEEEEEECCEEEEECCHHHHHh
Confidence 9999985 4 4599999999999999999998764
No 57
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.76 E-value=2e-19 Score=155.12 Aligned_cols=130 Identities=17% Similarity=0.203 Sum_probs=101.3
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHH---H
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKK---D 76 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~---~ 76 (286)
|||||++ +|+.+. .+|+|+++| .+|||+|++.+++. ||+|++. +.. . ...... +
T Consensus 77 KSTLlk~l~Gl~~p-~~G~I~~~g-------------~i~~v~Q~~~l~~~-tv~enl~-~~~--~----~~~~~~~~~~ 134 (290)
T 2bbs_A 77 KTSLLMMIMGELEP-SEGKIKHSG-------------RISFCSQNSWIMPG-TIKENII-GVS--Y----DEYRYRSVIK 134 (290)
T ss_dssp HHHHHHHHTTSSCE-EEEEEECCS-------------CEEEECSSCCCCSS-BHHHHHH-TTC--C----CHHHHHHHHH
T ss_pred HHHHHHHHhcCCCC-CCcEEEECC-------------EEEEEeCCCccCcc-cHHHHhh-Ccc--c----chHHHHHHHH
Confidence 8999999 997654 789999998 28999999988875 9999998 321 1 121111 1
Q ss_pred HHh----hh-h-----------hhcccCCccc-------------------cCCCcchHHHHHHHHH-HHHHHhCCCEEE
Q psy8953 77 QVS----LE-L-----------WNNFCKKKKK-------------------KKRGLDSSSCSQCVSL-LANLAKQGRTVV 120 (286)
Q Consensus 77 ~v~----l~-~-----------~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~-l~~l~~~g~tii 120 (286)
.+. +. . ...+|||||| ||++||+.++..+++. ++++. .|+|||
T Consensus 135 ~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~-~~~tvi 213 (290)
T 2bbs_A 135 ACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRI 213 (290)
T ss_dssp HTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT-TTSEEE
T ss_pred HhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh-CCCEEE
Confidence 111 11 1 1579999999 9999999999999996 45564 489999
Q ss_pred EEEcCCCHHHHHHhhhHhhhcCCeeecccChhcHH
Q psy8953 121 ATIHTPSALLFEKFDSLYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 121 ~~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 155 (286)
+++|+++. + ..+|++++|++|++++.|+++++.
T Consensus 214 ivtHd~~~-~-~~~d~i~~l~~G~i~~~g~~~~l~ 246 (290)
T 2bbs_A 214 LVTSKMEH-L-KKADKILILHEGSSYFYGTFSELQ 246 (290)
T ss_dssp EECCCHHH-H-HHSSEEEEEETTEEEEEECHHHHH
T ss_pred EEecCHHH-H-HcCCEEEEEECCeEEEeCCHHHHh
Confidence 99999853 4 569999999999999999998875
No 58
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.71 E-value=4.8e-20 Score=172.18 Aligned_cols=135 Identities=14% Similarity=-0.029 Sum_probs=88.2
Q ss_pred Cchhhhh---cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCC---CCHHHHHHHHHhcCCCCCCCHHHH
Q psy8953 1 MSIELNV---QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPK---LTVTEAMMIASHLKLGFKVSTQEK 74 (286)
Q Consensus 1 ~stll~~---~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~---~tV~e~l~f~~~~~~~~~~~~~~~ 74 (286)
||||+++ +|..+. -+|.|+|+|++.. ......++.+|||+|++....+ +++.+ .+ ....-...-..
T Consensus 52 KSTL~~~~ll~Gl~~~-~~g~i~v~g~~~~-~~~~~~~~~~g~~~q~~~~~~~l~~~~~~~-----~~-~~~~~l~~~~l 123 (525)
T 1tf7_A 52 KTLFSIQFLYNGIIEF-DEPGVFVTFEETP-QDIIKNARSFGWDLAKLVDEGKLFILDASP-----DP-EGQEVVGGFDL 123 (525)
T ss_dssp HHHHHHHHHHHHHHHH-CCCEEEEESSSCH-HHHHHHHGGGTCCHHHHHHTTSEEEEECCC-----CS-SCCSCCSSHHH
T ss_pred HHHHHHHHHHHHHHhC-CCCEEEEEEeCCH-HHHHHHHHHcCCChHHhhccCcEEEEecCc-----cc-chhhhhcccCH
Confidence 7999997 465432 3689999998843 2233445778999998753211 11110 00 00000000111
Q ss_pred HHHHhhh-hhhcccCCccc------cCC-----CcchHHHHHHHHHHHHHHhCCCEEEEEEcCCCHH--------HHHHh
Q psy8953 75 KDQVSLE-LWNNFCKKKKK------KKR-----GLDSSSCSQCVSLLANLAKQGRTVVATIHTPSAL--------LFEKF 134 (286)
Q Consensus 75 ~~~v~l~-~~~~~~gG~kq------pts-----gLD~~~~~~~~~~l~~l~~~g~tii~~~h~~~~~--------~~~~~ 134 (286)
... +. ....+||||+| ||+ +||+..+.+++++++.|++.|+|||+++|+++.. ...++
T Consensus 124 ~~~--~~~~~~~LS~g~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~la 201 (525)
T 1tf7_A 124 SAL--IERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVS 201 (525)
T ss_dssp HHH--HHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHC
T ss_pred HHH--HHHHHHHHHHcCCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeee
Confidence 111 12 45677899999 665 6899999999999999988899999999999753 33459
Q ss_pred hhHhhhcCCee
Q psy8953 135 DSLYALAKGHC 145 (286)
Q Consensus 135 d~v~~l~~G~i 145 (286)
|+|++|++|++
T Consensus 202 D~vi~L~~~~~ 212 (525)
T 1tf7_A 202 DNVVILRNVLE 212 (525)
T ss_dssp SEEEEEEEECS
T ss_pred eEEEEEEEEcc
Confidence 99999998654
No 59
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.67 E-value=8.1e-18 Score=158.79 Aligned_cols=138 Identities=14% Similarity=0.031 Sum_probs=107.0
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHH---H
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKK---D 76 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~---~ 76 (286)
|||||++ +|..+. .+|+|.+ ...+|||+|++..++.+||+|.+.+....+.. ..+... +
T Consensus 395 KSTLlk~l~Gl~~p-~~G~I~~-------------~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~---~~~~~~~~l~ 457 (607)
T 3bk7_A 395 KTTFVKMLAGVEEP-TEGKVEW-------------DLTVAYKPQYIKAEYEGTVYELLSKIDSSKLN---SNFYKTELLK 457 (607)
T ss_dssp HHHHHHHHHTSSCC-SBSCCCC-------------CCCEEEECSSCCCCCSSBHHHHHHHHHHHHHH---CHHHHHHTHH
T ss_pred HHHHHHHHhcCCCC-CceEEEE-------------eeEEEEEecCccCCCCCcHHHHHHhhhccCCC---HHHHHHHHHH
Confidence 7999999 997543 5787765 23599999999878899999888765211000 122222 2
Q ss_pred HHhhh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHh-CCCEEEEEEcCCCHHHH
Q psy8953 77 QVSLE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAK-QGRTVVATIHTPSALLF 131 (286)
Q Consensus 77 ~v~l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~-~g~tii~~~h~~~~~~~ 131 (286)
++.+. ...++|||||| ||++||+.++.+++++|+++++ .|.|||+++|+++ .+.
T Consensus 458 ~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~ 536 (607)
T 3bk7_A 458 PLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MID 536 (607)
T ss_dssp HHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHH
T ss_pred HcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHH
Confidence 23222 45679999999 9999999999999999999975 5999999999986 466
Q ss_pred HHhhhHhhhcC--CeeecccChhcHHH
Q psy8953 132 EKFDSLYALAK--GHCIYRGSISRLVP 156 (286)
Q Consensus 132 ~~~d~v~~l~~--G~i~~~g~~~~~~~ 156 (286)
.++||+++|++ |++++.|+++++..
T Consensus 537 ~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 537 YVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp HHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred HhCCEEEEEcCCcceEEecCCHHHHHh
Confidence 88999999986 88888999998874
No 60
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.67 E-value=2.2e-17 Score=154.08 Aligned_cols=138 Identities=15% Similarity=0.038 Sum_probs=107.0
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
|||||++ +|..+. .+|+|.+ ...+|||+|++..++.+||.|.+.+....+.. ..+...+.++
T Consensus 325 KSTLlk~l~Gl~~p-~~G~i~~-------------~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~---~~~~~~~~l~ 387 (538)
T 1yqt_A 325 KTTFVKMLAGVEEP-TEGKIEW-------------DLTVAYKPQYIKADYEGTVYELLSKIDASKLN---SNFYKTELLK 387 (538)
T ss_dssp HHHHHHHHHTSSCC-SBCCCCC-------------CCCEEEECSSCCCCCSSBHHHHHHHHHHHHHT---CHHHHHHTTT
T ss_pred HHHHHHHHhCCCCC-CCeEEEE-------------CceEEEEecCCcCCCCCcHHHHHHhhhccCCC---HHHHHHHHHH
Confidence 7999999 997543 5788765 23599999998877899998887764211111 1222333222
Q ss_pred ---hh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHh-CCCEEEEEEcCCCHHHH
Q psy8953 80 ---LE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAK-QGRTVVATIHTPSALLF 131 (286)
Q Consensus 80 ---l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~-~g~tii~~~h~~~~~~~ 131 (286)
+. ...++|||||| ||++||+.++.+++++|+++++ .|.|||+++|+.+ .+.
T Consensus 388 ~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~-~~~ 466 (538)
T 1yqt_A 388 PLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MID 466 (538)
T ss_dssp TTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHH
T ss_pred HcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHH
Confidence 22 45679999999 9999999999999999999975 5999999999986 466
Q ss_pred HHhhhHhhhcC--CeeecccChhcHHH
Q psy8953 132 EKFDSLYALAK--GHCIYRGSISRLVP 156 (286)
Q Consensus 132 ~~~d~v~~l~~--G~i~~~g~~~~~~~ 156 (286)
.+|||+++|++ |+++..|+++++..
T Consensus 467 ~~~drv~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 467 YVSDRLMVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp HHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred HhCCEEEEEeCCcceEeecCCHHHHHh
Confidence 88999999986 88888999998775
No 61
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.64 E-value=6.9e-17 Score=150.52 Aligned_cols=139 Identities=13% Similarity=0.015 Sum_probs=106.9
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHH---
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKD--- 76 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~--- 76 (286)
||||+++ +|+.+. .+|+|.++| +.++|++|+....+..||.|++.+....... .......+
T Consensus 307 KSTLl~~l~Gl~~p-~~G~i~~~~------------~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~--~~~~~~~~~l~ 371 (538)
T 3ozx_A 307 KTTFARILVGEITA-DEGSVTPEK------------QILSYKPQRIFPNYDGTVQQYLENASKDALS--TSSWFFEEVTK 371 (538)
T ss_dssp HHHHHHHHTTSSCC-SBCCEESSC------------CCEEEECSSCCCCCSSBHHHHHHHHCSSTTC--TTSHHHHHTTT
T ss_pred HHHHHHHHhCCCCC-CCcEEEECC------------eeeEeechhcccccCCCHHHHHHHhhhhccc--hhHHHHHHHHH
Confidence 7999999 997554 689998765 3479999998777789999999985432111 11122222
Q ss_pred HHhhh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHh-CCCEEEEEEcCCCHHHH
Q psy8953 77 QVSLE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAK-QGRTVVATIHTPSALLF 131 (286)
Q Consensus 77 ~v~l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~-~g~tii~~~h~~~~~~~ 131 (286)
++.+. ...++|||||| ||++||+.++.+++++|+++++ .|.|||+++|+++ .+.
T Consensus 372 ~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~-~~~ 450 (538)
T 3ozx_A 372 RLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLS-IHD 450 (538)
T ss_dssp TTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHH
T ss_pred HcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHH
Confidence 22222 56789999999 9999999999999999999986 5999999999986 466
Q ss_pred HHhhhHhhhcC--CeeecccChhcHH
Q psy8953 132 EKFDSLYALAK--GHCIYRGSISRLV 155 (286)
Q Consensus 132 ~~~d~v~~l~~--G~i~~~g~~~~~~ 155 (286)
.+||||++|++ |.+...+++.++.
T Consensus 451 ~~aDri~vl~~~~~~~~~~~~~~~~~ 476 (538)
T 3ozx_A 451 YIADRIIVFKGEPEKAGLATSPVTLK 476 (538)
T ss_dssp HHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred HhCCEEEEEeCCcceeccCCChHHHH
Confidence 88999999986 6666777776654
No 62
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.63 E-value=1e-16 Score=151.17 Aligned_cols=138 Identities=10% Similarity=0.027 Sum_probs=105.3
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHH---H
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKK---D 76 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~---~ 76 (286)
||||+++ +|+.+. .+|+ .+. ...++|++|+.......||+|.+....... ....+... +
T Consensus 391 KSTLlk~l~Gl~~p-~~G~------~~~-------~~~i~~~~q~~~~~~~~tv~e~~~~~~~~~---~~~~~~~~~~l~ 453 (608)
T 3j16_B 391 KTTLIKLLAGALKP-DEGQ------DIP-------KLNVSMKPQKIAPKFPGTVRQLFFKKIRGQ---FLNPQFQTDVVK 453 (608)
T ss_dssp HHHHHHHHHTSSCC-SBCC------CCC-------SCCEEEECSSCCCCCCSBHHHHHHHHCSST---TTSHHHHHHTHH
T ss_pred HHHHHHHHhcCCCC-CCCc------Ccc-------CCcEEEecccccccCCccHHHHHHHHhhcc---cccHHHHHHHHH
Confidence 7999999 997544 3453 121 246899999987667789999876543311 11222222 2
Q ss_pred HHhhh-----hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHh-CCCEEEEEEcCCCHHHH
Q psy8953 77 QVSLE-----LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAK-QGRTVVATIHTPSALLF 131 (286)
Q Consensus 77 ~v~l~-----~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~-~g~tii~~~h~~~~~~~ 131 (286)
++.+. ...++|||||| ||+|||+.++.+++++|++++. .|.|||+++|+++ .+.
T Consensus 454 ~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~-~~~ 532 (608)
T 3j16_B 454 PLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFI-MAT 532 (608)
T ss_dssp HHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHH
T ss_pred HcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHH
Confidence 33322 45679999999 9999999999999999999975 5999999999986 466
Q ss_pred HHhhhHhhhcC--CeeecccChhcHHH
Q psy8953 132 EKFDSLYALAK--GHCIYRGSISRLVP 156 (286)
Q Consensus 132 ~~~d~v~~l~~--G~i~~~g~~~~~~~ 156 (286)
.++||+++|++ |++++.|+|++++.
T Consensus 533 ~~aDrvivl~~~~g~~~~~g~p~~~~~ 559 (608)
T 3j16_B 533 YLADKVIVFEGIPSKNAHARAPESLLT 559 (608)
T ss_dssp HHCSEEEECEEETTTEEECCCCEEHHH
T ss_pred HhCCEEEEEeCCCCeEEecCChHHHhh
Confidence 88999999986 99999999999874
No 63
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.50 E-value=4.3e-15 Score=142.55 Aligned_cols=99 Identities=18% Similarity=0.298 Sum_probs=78.6
Q ss_pred CCCHHHHHHHHHhcCCCCCCCHHHHHHH---Hhh-----h-hhhcccCCccc----------------------cCCCcc
Q psy8953 50 KLTVTEAMMIASHLKLGFKVSTQEKKDQ---VSL-----E-LWNNFCKKKKK----------------------KKRGLD 98 (286)
Q Consensus 50 ~~tV~e~l~f~~~~~~~~~~~~~~~~~~---v~l-----~-~~~~~~gG~kq----------------------ptsgLD 98 (286)
.+||+|++.|..... ..++..+. +.+ . ...++|||||| ||++||
T Consensus 504 ~ltv~e~l~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD 578 (670)
T 3ux8_A 504 DMTVEDALDFFASIP-----KIKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLH 578 (670)
T ss_dssp TSBHHHHHHHTTTCH-----HHHHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCC
T ss_pred hCCHHHHHHHHHHhh-----hHHHHHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCC
Confidence 589999999865420 01111122 212 1 45679999999 999999
Q ss_pred hHHHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHhhhHhhh------cCCeeecccChhcHH
Q psy8953 99 SSSCSQCVSLLANLAKQGRTVVATIHTPSALLFEKFDSLYAL------AKGHCIYRGSISRLV 155 (286)
Q Consensus 99 ~~~~~~~~~~l~~l~~~g~tii~~~h~~~~~~~~~~d~v~~l------~~G~i~~~g~~~~~~ 155 (286)
+.++.+++++|++++++|+|||+++|+++ .+ ..+||+++| ++|++++.|+++++.
T Consensus 579 ~~~~~~i~~~l~~l~~~g~tvi~vtHd~~-~~-~~~d~i~~l~~~~g~~~G~i~~~g~~~~~~ 639 (670)
T 3ux8_A 579 VDDIARLLDVLHRLVDNGDTVLVIEHNLD-VI-KTADYIIDLGPEGGDRGGQIVAVGTPEEVA 639 (670)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEECCCHH-HH-TTCSEEEEEESSSGGGCCEEEEEECHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HH-HhCCEEEEecCCcCCCCCEEEEecCHHHHH
Confidence 99999999999999988999999999986 34 669999999 899999999998874
No 64
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.48 E-value=2e-14 Score=119.60 Aligned_cols=41 Identities=51% Similarity=0.663 Sum_probs=39.1
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
+.+|+++||+|++||+++|+||||||||||+|+|+|+++++
T Consensus 17 ~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~ 57 (224)
T 2pcj_A 17 YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPT 57 (224)
T ss_dssp EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCS
T ss_pred EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 56899999999999999999999999999999999999875
No 65
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.48 E-value=2.6e-14 Score=121.84 Aligned_cols=42 Identities=38% Similarity=0.702 Sum_probs=39.7
Q ss_pred ccccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 241 NKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 241 ~~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
.+.+|+++||+|++||+++|+||||||||||+|+|+|++++.
T Consensus 23 ~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~ 64 (266)
T 4g1u_C 23 QQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPS 64 (266)
T ss_dssp TEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCS
T ss_pred CeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC
Confidence 456999999999999999999999999999999999999875
No 66
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.47 E-value=3.1e-14 Score=119.65 Aligned_cols=41 Identities=34% Similarity=0.591 Sum_probs=39.1
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
+.+|+++||+|++||+++|+||||||||||+|+|+|+++++
T Consensus 19 ~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~ 59 (240)
T 1ji0_A 19 IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ 59 (240)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS
T ss_pred eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 56899999999999999999999999999999999999875
No 67
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.47 E-value=3.1e-14 Score=121.10 Aligned_cols=41 Identities=39% Similarity=0.606 Sum_probs=39.1
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
+.+|+++||+|++||+++|+||||||||||+|+|+|+++++
T Consensus 19 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~ 59 (262)
T 1b0u_A 19 HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS 59 (262)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 56999999999999999999999999999999999999875
No 68
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.47 E-value=3e-14 Score=119.29 Aligned_cols=41 Identities=41% Similarity=0.638 Sum_probs=38.9
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
..+|+++||+|++||+++|+||||||||||+|+|+|+++++
T Consensus 18 ~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~ 58 (235)
T 3tif_A 18 IYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT 58 (235)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS
T ss_pred eeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC
Confidence 45899999999999999999999999999999999999875
No 69
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.47 E-value=3.2e-14 Score=120.92 Aligned_cols=42 Identities=38% Similarity=0.688 Sum_probs=39.5
Q ss_pred ccccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 241 NKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 241 ~~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
++.+|+++||+|++||+++|+||||||||||+|+|+|+++++
T Consensus 36 ~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~ 77 (263)
T 2olj_A 36 SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFD 77 (263)
T ss_dssp TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS
T ss_pred CEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Confidence 356999999999999999999999999999999999999875
No 70
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.46 E-value=3.2e-14 Score=120.80 Aligned_cols=42 Identities=38% Similarity=0.700 Sum_probs=39.5
Q ss_pred ccccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 241 NKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 241 ~~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
++.+|+++||+|++||+++|+||||||||||+|+|+|+++++
T Consensus 19 ~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~ 60 (257)
T 1g6h_A 19 EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD 60 (257)
T ss_dssp TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS
T ss_pred CEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 356999999999999999999999999999999999999875
No 71
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.46 E-value=4.1e-14 Score=119.85 Aligned_cols=42 Identities=45% Similarity=0.729 Sum_probs=39.5
Q ss_pred ccccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 241 NKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 241 ~~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
.+.+|+++||+|++||+++|+||||||||||+|+|+|+++++
T Consensus 27 ~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~ 68 (256)
T 1vpl_A 27 KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS 68 (256)
T ss_dssp TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS
T ss_pred CEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 356999999999999999999999999999999999999875
No 72
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.45 E-value=5e-14 Score=120.49 Aligned_cols=41 Identities=39% Similarity=0.617 Sum_probs=38.7
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
..+|+++||+|++||+++|+||||||||||+|+|+|+++++
T Consensus 21 ~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~ 61 (275)
T 3gfo_A 21 THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS 61 (275)
T ss_dssp CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCS
T ss_pred CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC
Confidence 34899999999999999999999999999999999999875
No 73
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.45 E-value=4.2e-14 Score=116.57 Aligned_cols=40 Identities=28% Similarity=0.461 Sum_probs=38.5
Q ss_pred ccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 243 EILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 243 ~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
.+|+++||+|++||+++|+||||||||||+|+|+|+++++
T Consensus 23 ~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~ 62 (214)
T 1sgw_A 23 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL 62 (214)
T ss_dssp EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCS
T ss_pred eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 6899999999999999999999999999999999999875
No 74
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.45 E-value=4.7e-14 Score=121.01 Aligned_cols=42 Identities=40% Similarity=0.500 Sum_probs=39.5
Q ss_pred ccccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 241 NKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 241 ~~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
.+.+|+++||+|++||+++|+||||||||||+|+|+|+++++
T Consensus 33 ~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~ 74 (279)
T 2ihy_A 33 GKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPAT 74 (279)
T ss_dssp TEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS
T ss_pred CEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC
Confidence 356999999999999999999999999999999999999875
No 75
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.44 E-value=7.6e-14 Score=117.71 Aligned_cols=41 Identities=34% Similarity=0.510 Sum_probs=39.0
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
+.+|+++||+|++||+++|+||||||||||+|+|+|+++++
T Consensus 22 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~ 62 (247)
T 2ff7_A 22 PVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE 62 (247)
T ss_dssp CEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 46899999999999999999999999999999999999875
No 76
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.44 E-value=8.1e-14 Score=116.27 Aligned_cols=41 Identities=34% Similarity=0.536 Sum_probs=39.0
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
+.+|+++||+|++||+++|+||||||||||+|+|+|+++++
T Consensus 21 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~ 61 (229)
T 2pze_A 21 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS 61 (229)
T ss_dssp CCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCC
Confidence 45899999999999999999999999999999999999875
No 77
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.43 E-value=8.7e-14 Score=117.72 Aligned_cols=41 Identities=29% Similarity=0.567 Sum_probs=39.0
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
+.+|+++||+|++||+++|+||||||||||+|+|+|+++++
T Consensus 18 ~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~ 58 (253)
T 2nq2_C 18 NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPI 58 (253)
T ss_dssp TEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCS
T ss_pred CeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 56899999999999999999999999999999999999875
No 78
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.42 E-value=9.1e-14 Score=122.67 Aligned_cols=42 Identities=40% Similarity=0.642 Sum_probs=39.7
Q ss_pred ccccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 241 NKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 241 ~~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
...+|+|+||+|++||+++|+||||||||||+|+|+||++++
T Consensus 16 ~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~ 57 (359)
T 3fvq_A 16 NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD 57 (359)
T ss_dssp TEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCS
T ss_pred CEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCC
Confidence 456999999999999999999999999999999999999885
No 79
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.42 E-value=1.1e-13 Score=118.21 Aligned_cols=41 Identities=34% Similarity=0.622 Sum_probs=39.0
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
+.+|+++||+|++||+++|+||||||||||+|+|+|+++++
T Consensus 32 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~ 72 (271)
T 2ixe_A 32 VQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT 72 (271)
T ss_dssp SCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS
T ss_pred ceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 45899999999999999999999999999999999999875
No 80
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.42 E-value=8.7e-14 Score=116.64 Aligned_cols=41 Identities=34% Similarity=0.451 Sum_probs=38.7
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
+.+|+++||+|++||+++|+||||||||||+|+|+|+++++
T Consensus 18 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~ 58 (237)
T 2cbz_A 18 PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV 58 (237)
T ss_dssp CCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEE
T ss_pred CceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 45899999999999999999999999999999999999874
No 81
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.41 E-value=1.5e-13 Score=122.10 Aligned_cols=42 Identities=36% Similarity=0.657 Sum_probs=39.6
Q ss_pred ccccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 241 NKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 241 ~~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
...+|+|+||+|++||+++|+||||||||||+|+|+||++++
T Consensus 15 ~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~ 56 (381)
T 3rlf_A 15 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT 56 (381)
T ss_dssp TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS
T ss_pred CEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCC
Confidence 356999999999999999999999999999999999999875
No 82
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.41 E-value=1.2e-13 Score=116.65 Aligned_cols=40 Identities=48% Similarity=0.687 Sum_probs=37.3
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcC--CCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL--TYL 281 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL--~~~ 281 (286)
+.+|+++||+|++||+++|+||||||||||+|+|+|+ +++
T Consensus 16 ~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p 57 (250)
T 2d2e_A 16 ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTV 57 (250)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEE
T ss_pred EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 5699999999999999999999999999999999998 544
No 83
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.40 E-value=1.5e-13 Score=117.26 Aligned_cols=41 Identities=39% Similarity=0.551 Sum_probs=38.8
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
+.+|+++||+|++||+++|+||||||||||+|+|+|+++++
T Consensus 20 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~ 60 (266)
T 2yz2_A 20 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT 60 (266)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC
Confidence 35899999999999999999999999999999999999875
No 84
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.39 E-value=2.2e-13 Score=120.38 Aligned_cols=41 Identities=37% Similarity=0.488 Sum_probs=38.9
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
..+|+|+||+|++||+++|+||||||||||+|+|+||++++
T Consensus 41 ~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~ 81 (366)
T 3tui_C 41 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT 81 (366)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS
T ss_pred eEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCC
Confidence 35899999999999999999999999999999999999985
No 85
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.39 E-value=2.5e-13 Score=119.87 Aligned_cols=41 Identities=34% Similarity=0.730 Sum_probs=39.0
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
+.+|+++||+|++||+++|+||||||||||+|+|+||++++
T Consensus 28 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~ 68 (355)
T 1z47_A 28 ARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPT 68 (355)
T ss_dssp TTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS
T ss_pred CEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC
Confidence 45899999999999999999999999999999999999875
No 86
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.38 E-value=2.7e-13 Score=119.94 Aligned_cols=41 Identities=41% Similarity=0.667 Sum_probs=39.1
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
+.+|+++||+|++||+++|+||||||||||+|+|+||++++
T Consensus 16 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~ 56 (359)
T 2yyz_A 16 VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPT 56 (359)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCS
T ss_pred EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCC
Confidence 56899999999999999999999999999999999999875
No 87
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.38 E-value=2.2e-13 Score=116.13 Aligned_cols=39 Identities=51% Similarity=0.807 Sum_probs=36.8
Q ss_pred ccccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCC
Q psy8953 241 NKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLT 279 (286)
Q Consensus 241 ~~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~ 279 (286)
++.+|+++||+|++||+++|+||||||||||+|+|+|++
T Consensus 32 ~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~ 70 (267)
T 2zu0_C 32 DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGRE 70 (267)
T ss_dssp TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCT
T ss_pred CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356999999999999999999999999999999999995
No 88
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.38 E-value=3.2e-13 Score=119.57 Aligned_cols=41 Identities=41% Similarity=0.635 Sum_probs=39.0
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
+.+|+++||+|++||+++|+||||||||||+|+|+||++++
T Consensus 16 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~ 56 (362)
T 2it1_A 16 FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPT 56 (362)
T ss_dssp SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS
T ss_pred EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCC
Confidence 56899999999999999999999999999999999999875
No 89
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.37 E-value=3.6e-13 Score=119.79 Aligned_cols=41 Identities=37% Similarity=0.609 Sum_probs=39.1
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
+.+|+++||+|.+||+++|+||||||||||+|+|+||++++
T Consensus 16 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~ 56 (372)
T 1g29_1 16 VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS 56 (372)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCC
Confidence 56899999999999999999999999999999999999875
No 90
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.37 E-value=3.7e-13 Score=119.60 Aligned_cols=42 Identities=33% Similarity=0.582 Sum_probs=39.5
Q ss_pred ccccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 241 NKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 241 ~~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
.+.+|+++||+|++||+++|+||||||||||+|+|+||++++
T Consensus 23 ~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~ 64 (372)
T 1v43_A 23 NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT 64 (372)
T ss_dssp TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS
T ss_pred CEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC
Confidence 356899999999999999999999999999999999999875
No 91
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.36 E-value=3.9e-13 Score=114.18 Aligned_cols=39 Identities=28% Similarity=0.386 Sum_probs=37.3
Q ss_pred ccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCC
Q psy8953 243 EILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYL 281 (286)
Q Consensus 243 ~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~ 281 (286)
.+|+++||+|++||+++|+||||||||||+|+|+|++++
T Consensus 34 ~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~ 72 (260)
T 2ghi_A 34 RTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA 72 (260)
T ss_dssp CSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred ceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC
Confidence 589999999999999999999999999999999999874
No 92
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.36 E-value=1.6e-13 Score=133.57 Aligned_cols=103 Identities=17% Similarity=0.230 Sum_probs=78.4
Q ss_pred CCCHHHHHHHHHhcCCCCCCCHHHHHHHHhh-----h-hhhcccCCccc----------------------cCCCcchHH
Q psy8953 50 KLTVTEAMMIASHLKLGFKVSTQEKKDQVSL-----E-LWNNFCKKKKK----------------------KKRGLDSSS 101 (286)
Q Consensus 50 ~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~l-----~-~~~~~~gG~kq----------------------ptsgLD~~~ 101 (286)
.+||.|++.|.... +......+..+++.| . ...++||||+| ||+|||+.+
T Consensus 806 ~ltv~e~l~~~~~~--~~~~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~ 883 (972)
T 2r6f_A 806 DMTVEDALDFFASI--PKIKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDD 883 (972)
T ss_dssp TSBHHHHHHHTCSC--HHHHHHHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHH
T ss_pred hcCHHHHHHHHhcc--hhHHHHHHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHH
Confidence 46899999885432 100000112222222 2 45679999999 999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHhhhHhhh------cCCeeecccChhcHHH
Q psy8953 102 CSQCVSLLANLAKQGRTVVATIHTPSALLFEKFDSLYAL------AKGHCIYRGSISRLVP 156 (286)
Q Consensus 102 ~~~~~~~l~~l~~~g~tii~~~h~~~~~~~~~~d~v~~l------~~G~i~~~g~~~~~~~ 156 (286)
+.+++++|++|+++|.|||+++|+++. + ..+|++++| ++|++++.|+++++..
T Consensus 884 ~~~l~~lL~~L~~~G~TVIvisHdl~~-i-~~aDrIivL~p~gG~~~G~Iv~~g~~~el~~ 942 (972)
T 2r6f_A 884 IARLLDVLHRLVDNGDTVLVIEHNLDV-I-KTADYIIDLGPEGGDRGGQIVAVGTPEEVAE 942 (972)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECCCHHH-H-TTCSEEEEECSSSTTSCCSEEEEESHHHHHT
T ss_pred HHHHHHHHHHHHhCCCEEEEEcCCHHH-H-HhCCEEEEEcCCCCCCCCEEEEecCHHHHHh
Confidence 999999999999889999999999863 4 679999999 6899999999987753
No 93
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.36 E-value=2.9e-13 Score=119.63 Aligned_cols=41 Identities=37% Similarity=0.644 Sum_probs=39.0
Q ss_pred cc--cceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 242 KE--ILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 242 ~~--il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
+. +|+++||+|++||+++|+||||||||||+|+|+||++++
T Consensus 16 ~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~ 58 (353)
T 1oxx_K 16 GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS 58 (353)
T ss_dssp GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCS
T ss_pred EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC
Confidence 55 899999999999999999999999999999999999875
No 94
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.35 E-value=4.7e-13 Score=131.21 Aligned_cols=63 Identities=16% Similarity=0.201 Sum_probs=53.0
Q ss_pred hcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHhhhHhhhcCCe
Q psy8953 84 NNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVATIHTPSALLFEKFDSLYALAKGH 144 (286)
Q Consensus 84 ~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~~~~~~~~~~d~v~~l~~G~ 144 (286)
..+|||||| ||++||+.+...+++.|+++ +.|||+++|+.+ .+..++|++++|++|+
T Consensus 900 ~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~---g~tVIiISHD~e-~v~~l~DrVivL~~G~ 975 (986)
T 2iw3_A 900 RGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF---EGGVIIITHSAE-FTKNLTEEVWAVKDGR 975 (986)
T ss_dssp GGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC---SSEEEEECSCHH-HHTTTCCEEECCBTTB
T ss_pred cccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh---CCEEEEEECCHH-HHHHhCCEEEEEECCE
Confidence 469999999 99999999999988888655 569999999985 4557899999999999
Q ss_pred eecccC
Q psy8953 145 CIYRGS 150 (286)
Q Consensus 145 i~~~g~ 150 (286)
++..|+
T Consensus 976 Iv~~G~ 981 (986)
T 2iw3_A 976 MTPSGH 981 (986)
T ss_dssp CCC---
T ss_pred EEEeCC
Confidence 998774
No 95
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.35 E-value=3.8e-13 Score=115.88 Aligned_cols=41 Identities=34% Similarity=0.536 Sum_probs=38.7
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
+.+|+++||+|++||+++|+||||||||||+|+|+|+++++
T Consensus 51 ~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~ 91 (290)
T 2bbs_A 51 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS 91 (290)
T ss_dssp CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEE
T ss_pred ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC
Confidence 45899999999999999999999999999999999999874
No 96
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.35 E-value=4.2e-13 Score=116.29 Aligned_cols=41 Identities=41% Similarity=0.610 Sum_probs=39.1
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
..+|+++||+|++||++||+||||||||||+++|+|+++++
T Consensus 67 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~ 107 (306)
T 3nh6_A 67 RETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDIS 107 (306)
T ss_dssp CEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCS
T ss_pred CceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC
Confidence 46999999999999999999999999999999999999875
No 97
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.32 E-value=2.8e-13 Score=132.46 Aligned_cols=103 Identities=19% Similarity=0.258 Sum_probs=79.6
Q ss_pred CCCHHHHHHHHHhcCCCCCCCHHHHHHHHhhh------hhhcccCCccc----------------------cCCCcchHH
Q psy8953 50 KLTVTEAMMIASHLKLGFKVSTQEKKDQVSLE------LWNNFCKKKKK----------------------KKRGLDSSS 101 (286)
Q Consensus 50 ~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~l~------~~~~~~gG~kq----------------------ptsgLD~~~ 101 (286)
.+||+|.+.|.... +......+..+++.|. ...++||||+| ||+|||+.+
T Consensus 766 ~~tv~eal~f~~~~--~~~~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~ 843 (916)
T 3pih_A 766 DMTVDEALEFFKNI--PSIKRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFED 843 (916)
T ss_dssp SSBHHHHHHHTTTC--HHHHHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHH
T ss_pred hCCHHHHHHHHhcc--hhHHHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHH
Confidence 47899999987642 1000011122233332 44679999999 999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHhhhHhhh------cCCeeecccChhcHHH
Q psy8953 102 CSQCVSLLANLAKQGRTVVATIHTPSALLFEKFDSLYAL------AKGHCIYRGSISRLVP 156 (286)
Q Consensus 102 ~~~~~~~l~~l~~~g~tii~~~h~~~~~~~~~~d~v~~l------~~G~i~~~g~~~~~~~ 156 (286)
...++++|++|+++|.|||+++|+++ .+ ..+|+|++| ++|+|++.|+++++..
T Consensus 844 ~~~L~~lL~~L~~~G~TVIvI~HdL~-~i-~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~~ 902 (916)
T 3pih_A 844 VRKLVEVLHRLVDRGNTVIVIEHNLD-VI-KNADHIIDLGPEGGKEGGYIVATGTPEEIAK 902 (916)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECCCHH-HH-TTCSEEEEEESSSGGGCCEEEEEESHHHHHS
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHH-HH-HhCCEEEEecCCCCCCCCEEEEEcCHHHHHh
Confidence 99999999999988999999999985 34 559999999 8999999999998763
No 98
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.32 E-value=1.5e-13 Score=133.22 Aligned_cols=72 Identities=17% Similarity=0.260 Sum_probs=65.2
Q ss_pred hhhcccCCccc----------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHhhhHhh
Q psy8953 82 LWNNFCKKKKK----------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVATIHTPSALLFEKFDSLYA 139 (286)
Q Consensus 82 ~~~~~~gG~kq----------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~~~~~~~~~~d~v~~ 139 (286)
...++||||+| ||+|||+.+..+++++|++|+++|.|||+++|+++. + ..+|++++
T Consensus 727 ~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~-i-~~aDrii~ 804 (842)
T 2vf7_A 727 PATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQV-V-AASDWVLD 804 (842)
T ss_dssp CGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHH-H-TTCSEEEE
T ss_pred CcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHH-H-HhCCEEEE
Confidence 45679999999 999999999999999999999889999999999863 5 77999999
Q ss_pred h------cCCeeecccChhcHH
Q psy8953 140 L------AKGHCIYRGSISRLV 155 (286)
Q Consensus 140 l------~~G~i~~~g~~~~~~ 155 (286)
| ++|++++.|+++++.
T Consensus 805 L~p~~g~~~G~Iv~~g~~~el~ 826 (842)
T 2vf7_A 805 IGPGAGEDGGRLVAQGTPAEVA 826 (842)
T ss_dssp ECSSSGGGCCSEEEEECHHHHT
T ss_pred ECCCCCCCCCEEEEEcCHHHHH
Confidence 9 689999999988764
No 99
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.31 E-value=1.2e-12 Score=111.17 Aligned_cols=39 Identities=38% Similarity=0.621 Sum_probs=36.6
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
+.+|+++||+|+ ||+++|+||||||||||+|+|+|++ ++
T Consensus 18 ~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~ 56 (263)
T 2pjz_A 18 RFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PY 56 (263)
T ss_dssp EEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CC
T ss_pred ceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CC
Confidence 348999999999 9999999999999999999999998 74
No 100
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.28 E-value=2.2e-12 Score=115.33 Aligned_cols=39 Identities=38% Similarity=0.548 Sum_probs=37.3
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTY 280 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~ 280 (286)
..+|+++||+|++||+++|+||||||||||+|+|+||++
T Consensus 34 ~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~ 72 (390)
T 3gd7_A 34 NAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN 72 (390)
T ss_dssp CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE
T ss_pred eEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC
Confidence 468999999999999999999999999999999999985
No 101
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.28 E-value=5.3e-13 Score=130.39 Aligned_cols=103 Identities=15% Similarity=0.200 Sum_probs=78.5
Q ss_pred CCCHHHHHHHHHhcCCCCCCCHHHHHHHHhhh------hhhcccCCccc----------------------cCCCcchHH
Q psy8953 50 KLTVTEAMMIASHLKLGFKVSTQEKKDQVSLE------LWNNFCKKKKK----------------------KKRGLDSSS 101 (286)
Q Consensus 50 ~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~l~------~~~~~~gG~kq----------------------ptsgLD~~~ 101 (286)
.+||.|.+.|...+ +......+..+++.|. ...++||||+| ||+|||+.+
T Consensus 824 ~ltv~e~l~~~~~~--~~~~~~~~~L~~lgL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~ 901 (993)
T 2ygr_A 824 DMSIEEAAEFFEPI--AGVHRYLRTLVDVGLGYVRLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDD 901 (993)
T ss_dssp SSBHHHHHHHSTTC--HHHHHHHHHHHHTTGGGSBTTCCGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHH
T ss_pred hccHHHHHHHhhcc--hHHHHHHHHHHHcCCCcccccCccccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHH
Confidence 46889999886532 1000001122222232 45679999999 999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHhhhHhhh------cCCeeecccChhcHHH
Q psy8953 102 CSQCVSLLANLAKQGRTVVATIHTPSALLFEKFDSLYAL------AKGHCIYRGSISRLVP 156 (286)
Q Consensus 102 ~~~~~~~l~~l~~~g~tii~~~h~~~~~~~~~~d~v~~l------~~G~i~~~g~~~~~~~ 156 (286)
+.+++++|++|+++|.|||+++|+++. + ..+|++++| ++|++++.|+++++..
T Consensus 902 ~~~l~~lL~~L~~~G~TVIvisHdl~~-i-~~aDrIivL~p~gg~~~G~Iv~~G~~~el~~ 960 (993)
T 2ygr_A 902 IRKLLNVINGLVDKGNTVIVIEHNLDV-I-KTSDWIIDLGPEGGAGGGTVVAQGTPEDVAA 960 (993)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECCCHHH-H-TTCSEEEEEESSSTTSCSEEEEEECHHHHHH
T ss_pred HHHHHHHHHHHHhCCCEEEEEcCCHHH-H-HhCCEEEEECCCcCCCCCEEEEecCHHHHHh
Confidence 999999999999889999999999864 4 679999999 7899999999988754
No 102
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.28 E-value=3.6e-13 Score=105.74 Aligned_cols=38 Identities=21% Similarity=0.065 Sum_probs=36.2
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLT 279 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~ 279 (286)
+.+++++||++++||+++|+||||||||||+|+|+|++
T Consensus 20 ~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 20 KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 45899999999999999999999999999999999998
No 103
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.26 E-value=4.7e-14 Score=128.29 Aligned_cols=143 Identities=13% Similarity=0.109 Sum_probs=108.5
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCe---ecCch-----hhhcccceeeEEecCc-ccCCCCCHHHHHHHHHhcCCCCCCC
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQ---ERKSA-----CIEQFLKLSCYIQQDD-ALRPKLTVTEAMMIASHLKLGFKVS 70 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~---~~~~~-----~~~~~~~~~g~v~Q~~-~~~~~~tV~e~l~f~~~~~~~~~~~ 70 (286)
|||||++ +|.... ..|.|.++|+ ++... ....+++.++||+|++ ..++.+||.++++|.++....
T Consensus 170 KSTLl~~Iag~~~~-~~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~---- 244 (438)
T 2dpy_A 170 KSVLLGMMARYTRA-DVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRD---- 244 (438)
T ss_dssp HHHHHHHHHHHSCC-SEEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHhcccCC-CeEEEEEeceecHHHHHHHHhhccccccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHh----
Confidence 8999999 997544 5899999998 44321 0134578899999965 578899999999999874110
Q ss_pred HHHHHHHHh--hhhhhcccCCccc-------c--CCCcchHHHHHHHHHHHHHHh---C-CC-----EEEEEEcCCCHHH
Q psy8953 71 TQEKKDQVS--LELWNNFCKKKKK-------K--KRGLDSSSCSQCVSLLANLAK---Q-GR-----TVVATIHTPSALL 130 (286)
Q Consensus 71 ~~~~~~~v~--l~~~~~~~gG~kq-------p--tsgLD~~~~~~~~~~l~~l~~---~-g~-----tii~~~h~~~~~~ 130 (286)
..++|. ++....++|||++ | |++||+.....+.+++.++.+ + |. ||++++|+.+.
T Consensus 245 ---~~~~v~~~ld~l~~lS~g~qrvslAl~~p~~t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~~-- 319 (438)
T 2dpy_A 245 ---RGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQD-- 319 (438)
T ss_dssp ---TTCEEEEEEECHHHHHHHHHHHHHHTTCCCCSSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSCC--
T ss_pred ---CCCCHHHHHHhHHHHHHHHHHHHHHhCCCcccccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCccc--
Confidence 112232 2244556788844 4 899999999999999999976 3 74 89999999983
Q ss_pred HHHhhhHhhhcCCeeecccChhcH
Q psy8953 131 FEKFDSLYALAKGHCIYRGSISRL 154 (286)
Q Consensus 131 ~~~~d~v~~l~~G~i~~~g~~~~~ 154 (286)
..+|++++|.+|+|+..+++.+.
T Consensus 320 -~iad~v~~l~dG~Ivl~~~~~~~ 342 (438)
T 2dpy_A 320 -PIADSARAILDGHIVLSRRLAEA 342 (438)
T ss_dssp -HHHHHHHHHSSEEEEECHHHHHT
T ss_pred -hhhceEEEEeCcEEEEeCCHHHc
Confidence 55999999999999999876543
No 104
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.21 E-value=1.1e-12 Score=112.11 Aligned_cols=116 Identities=12% Similarity=0.138 Sum_probs=73.0
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
||||+|+ +|.... .+|+|.++|+++.. ....+.+|||+|++.+++.+||.|++.|+....- ....+.+.+.+.
T Consensus 15 KSTLln~L~g~~~~-~~G~i~~~g~~i~~---~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~--~~~~~~i~~~~~ 88 (270)
T 3sop_A 15 KSTLVNTLFKSQVS-RKASSWNREEKIPK---TVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINN--ENCWEPIEKYIN 88 (270)
T ss_dssp HHHHHHHHHHHHC-------------CCC---CCSCCEEEESCC----CCEEEEECCCC--CCSBC--TTCSHHHHHHHH
T ss_pred HHHHHHHHhCCCCC-CCCccccCCcccCc---ceeeeeeEEEeecCCCcCCceEEechhhhhhccc--HHHHHHHHHHHH
Confidence 8999999 996543 57999999998864 3456889999999999999999999999876422 122234444443
Q ss_pred --h-h-hhhcccCCccc----------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcCCC
Q psy8953 80 --L-E-LWNNFCKKKKK----------------KKRGLDSSSCSQCVSLLANLAKQGRTVVATIHTPS 127 (286)
Q Consensus 80 --l-~-~~~~~~gG~kq----------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~~~ 127 (286)
. . ....+||||+| |+.+||+.. ..+++.|.+. .++|+++|+.+
T Consensus 89 ~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD----~~~l~~L~~~-~~vI~Vi~K~D 151 (270)
T 3sop_A 89 EQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD----LEFMKHLSKV-VNIIPVIAKAD 151 (270)
T ss_dssp HHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH----HHHHHHHHTT-SEEEEEETTGG
T ss_pred HHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH----HHHHHHHHhc-CcEEEEEeccc
Confidence 2 2 56789999998 779999877 5667777776 89999999964
No 105
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.20 E-value=1.1e-11 Score=112.11 Aligned_cols=61 Identities=15% Similarity=0.235 Sum_probs=54.6
Q ss_pred ccCCccc---------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHhhhHhhh----
Q psy8953 86 FCKKKKK---------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVATIHTPSALLFEKFDSLYAL---- 140 (286)
Q Consensus 86 ~~gG~kq---------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~~~~~~~~~~d~v~~l---- 140 (286)
+||||+| ||++||+.++..+.+.|++++ +|.|||+++|+++ +...+|++++|
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~~--~~~~~d~i~~l~k~~ 372 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLAQ--IAARAHHHYKVEKQV 372 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCHH--HHTTCSEEEEEEEEE
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcHH--HHhhcCeEEEEEEec
Confidence 6999998 899999999999999999998 5899999999973 45789999999
Q ss_pred cCCeeeccc
Q psy8953 141 AKGHCIYRG 149 (286)
Q Consensus 141 ~~G~i~~~g 149 (286)
++|+++...
T Consensus 373 ~~G~~~~~~ 381 (415)
T 4aby_A 373 EDGRTVSHV 381 (415)
T ss_dssp ETTEEEEEE
T ss_pred cCCceEEEE
Confidence 899988653
No 106
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.18 E-value=8.4e-14 Score=127.30 Aligned_cols=138 Identities=8% Similarity=-0.035 Sum_probs=95.6
Q ss_pred Cchhhhh-cCCCCCCcee-E-EEECCeecCchhhhcccceeeEEecCccc---CCCCCHHHHHHHHHhcCCCCCCCHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSG-K-ILVNGQERKSACIEQFLKLSCYIQQDDAL---RPKLTVTEAMMIASHLKLGFKVSTQEK 74 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G-~-i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~---~~~~tV~e~l~f~~~~~~~~~~~~~~~ 74 (286)
|||||++ +|+... .+| + |++||. .++.++||+|+..+ +..+||+|++ |++...... ...+.+
T Consensus 151 KSTLlr~L~Gl~~p-~~G~~pI~vdg~---------~~~~i~~vpq~~~l~~~~~~~tv~eni-~~~~~~~~~-~~~~~~ 218 (460)
T 2npi_A 151 KTSLSRTLCSYALK-FNAYQPLYINLD---------PQQPIFTVPGCISATPISDILDAQLPT-WGQSLTSGA-TLLHNK 218 (460)
T ss_dssp HHHHHHHHHHTTHH-HHCCCCEEEECC---------TTSCSSSCSSCCEEEECCSCCCTTCTT-CSCBCBSSC-CSSCCB
T ss_pred HHHHHHHHhCcccc-cCCceeEEEcCC---------ccCCeeeeccchhhcccccccchhhhh-cccccccCc-chHHHH
Confidence 8999999 997643 689 8 999982 24679999999853 4568999999 766521110 000001
Q ss_pred HH---HHhhh---hhhcccCCccc--------------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEE
Q psy8953 75 KD---QVSLE---LWNNFCKKKKK--------------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVAT 122 (286)
Q Consensus 75 ~~---~v~l~---~~~~~~gG~kq--------------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~ 122 (286)
.+ ++.+. ....+|||||| ||++||+. ...+.+++++ .++|+|++
T Consensus 219 ~~ll~~~gl~~~~~~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~---~~~tviiV 294 (460)
T 2npi_A 219 QPMVKNFGLERINENKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEK---LNVNIMLV 294 (460)
T ss_dssp CCEECCCCSSSGGGCHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHH---TTCCEEEE
T ss_pred HHHHHHhCCCcccchhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHH---hCCCEEEE
Confidence 11 11122 13467899988 89999998 4444444443 38899999
Q ss_pred EcCCC--H---HHHHHhhh-----Hhhhc-CCeeecccChhcHH
Q psy8953 123 IHTPS--A---LLFEKFDS-----LYALA-KGHCIYRGSISRLV 155 (286)
Q Consensus 123 ~h~~~--~---~~~~~~d~-----v~~l~-~G~i~~~g~~~~~~ 155 (286)
+|+.+ . .+..++|+ +++|+ +|+++ .|+++++.
T Consensus 295 th~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~~ 337 (460)
T 2npi_A 295 LCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYKR 337 (460)
T ss_dssp ECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHHH
T ss_pred EccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHHh
Confidence 99987 1 35578999 99999 99999 89887653
No 107
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.15 E-value=2.1e-11 Score=115.03 Aligned_cols=41 Identities=29% Similarity=0.490 Sum_probs=39.0
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
+.+|+|+|+++++||++||+||||||||||+++|+|+++++
T Consensus 356 ~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~ 396 (582)
T 3b60_A 356 VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID 396 (582)
T ss_dssp CCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCS
T ss_pred CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCC
Confidence 46999999999999999999999999999999999999875
No 108
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.15 E-value=2.2e-11 Score=114.89 Aligned_cols=41 Identities=32% Similarity=0.485 Sum_probs=39.1
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
+.+|+|+|+++++||++||+||||||||||+|+|+|+++++
T Consensus 356 ~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~ 396 (582)
T 3b5x_A 356 KPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVD 396 (582)
T ss_pred ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 46999999999999999999999999999999999999875
No 109
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.14 E-value=2e-11 Score=115.57 Aligned_cols=40 Identities=40% Similarity=0.599 Sum_probs=38.5
Q ss_pred ccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 243 EILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 243 ~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
.+|+|+||++++||++||+||||||||||+++|+|+++++
T Consensus 358 ~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~ 397 (595)
T 2yl4_A 358 PIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPA 397 (595)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCS
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC
Confidence 5999999999999999999999999999999999999875
No 110
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.12 E-value=2.1e-11 Score=114.89 Aligned_cols=41 Identities=34% Similarity=0.532 Sum_probs=39.0
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
.++|+|+||++++||++||+||||||||||+++|+|+++++
T Consensus 354 ~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~ 394 (578)
T 4a82_A 354 APILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT 394 (578)
T ss_dssp CCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCS
T ss_pred CcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCC
Confidence 45899999999999999999999999999999999999875
No 111
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.11 E-value=2.9e-11 Score=114.37 Aligned_cols=41 Identities=37% Similarity=0.664 Sum_probs=39.0
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
+++|+|+||++++||++||+||||||||||+++|+|+++++
T Consensus 368 ~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~ 408 (598)
T 3qf4_B 368 KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVD 408 (598)
T ss_dssp SCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCS
T ss_pred CccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCC
Confidence 45899999999999999999999999999999999999875
No 112
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.10 E-value=3.5e-11 Score=113.60 Aligned_cols=41 Identities=37% Similarity=0.648 Sum_probs=39.0
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
+++|+|+||+|++||++||+||||||||||+++|+|+++++
T Consensus 356 ~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~ 396 (587)
T 3qf4_A 356 DPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPE 396 (587)
T ss_dssp CCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCS
T ss_pred CcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCC
Confidence 46999999999999999999999999999999999999875
No 113
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.06 E-value=1.5e-11 Score=106.23 Aligned_cols=38 Identities=26% Similarity=0.257 Sum_probs=36.0
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLT 279 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~ 279 (286)
..+|+++|++|++||+++|+||||||||||+++|+|++
T Consensus 113 ~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 113 INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 45899999999999999999999999999999999985
No 114
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=99.01 E-value=1.2e-10 Score=106.38 Aligned_cols=40 Identities=23% Similarity=0.234 Sum_probs=37.4
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
..+|+++||+|++ |+++|+||||||||||+++|+|+++++
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~ 56 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPD 56 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCC
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCC
Confidence 3479999999999 999999999999999999999999875
No 115
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.93 E-value=1.1e-10 Score=105.04 Aligned_cols=41 Identities=37% Similarity=0.579 Sum_probs=38.6
Q ss_pred cccceeeeeEEeCCC--------------------EEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 242 KEILHGISGEFKAGQ--------------------LTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge--------------------~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
+.+|+++++++++|| ++||+|+||||||||+++|+|+.++.
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~ 96 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEE 96 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTS
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCcc
Confidence 458999999999999 99999999999999999999998874
No 116
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=98.92 E-value=2.5e-12 Score=105.46 Aligned_cols=135 Identities=8% Similarity=-0.092 Sum_probs=84.9
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCC---CCCCCHHHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKL---GFKVSTQEKKD 76 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~---~~~~~~~~~~~ 76 (286)
||||+++ +|+.+ .+.+.+.+.+.+.. ...++.++||||++..|+.+||.|++.+...... ..+.+.+++++
T Consensus 33 KSTLl~~l~gl~~-~i~~~~~~~~~~~~----~~~~~~i~~~~q~~~~~~~~~~~~~l~~~~~~~~n~~~~g~~~~~~~~ 107 (207)
T 1znw_A 33 KSTVVRCLRERIP-NLHFSVSATTRAPR----PGEVDGVDYHFIDPTRFQQLIDQGELLEWAEIHGGLHRSGTLAQPVRA 107 (207)
T ss_dssp HHHHHHHHHHHST-TCEECCCEESSCCC----TTCCBTTTBEECCHHHHHHHHHTTCEEEEEEEGGGTEEEEEEHHHHHH
T ss_pred HHHHHHHHHhhCC-ceEEcccccccCCc----ccccCCCeeEecCHHHHHHHHhcCCceeehhhcCchhhcCCcHHHHHH
Confidence 8999999 99754 23333222222211 1234679999999988888888887643221100 01234555555
Q ss_pred HHh-------------hh-----hhhccc---CCccc-----cCCCc----chHHHHHHHHHHHHHHh-CCCEEEEEEcC
Q psy8953 77 QVS-------------LE-----LWNNFC---KKKKK-----KKRGL----DSSSCSQCVSLLANLAK-QGRTVVATIHT 125 (286)
Q Consensus 77 ~v~-------------l~-----~~~~~~---gG~kq-----ptsgL----D~~~~~~~~~~l~~l~~-~g~tii~~~h~ 125 (286)
++. +. ..+.+| .-..- |+++| |+..+.++.++++++++ .|.|+|+++|+
T Consensus 108 ~~~~~~~~~~~l~~~gl~~~~~~~~~~lS~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHd 187 (207)
T 1znw_A 108 AAATGVPVLIEVDLAGARAIKKTMPEAVTVFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRR 187 (207)
T ss_dssp HHHHTCCEEEECCHHHHHHHHHHCTTSEEEEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSS
T ss_pred HHHcCCeEEEEeCHHHHHHHHHhcCCcEEEEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCC
Confidence 443 11 111111 00000 78886 88899999999999986 49999999999
Q ss_pred CCHHHHHHhhhHhhhc
Q psy8953 126 PSALLFEKFDSLYALA 141 (286)
Q Consensus 126 ~~~~~~~~~d~v~~l~ 141 (286)
++ .+...+|++++|.
T Consensus 188 l~-~~~~~~d~i~~l~ 202 (207)
T 1znw_A 188 LE-SACAELVSLLVGT 202 (207)
T ss_dssp HH-HHHHHHHHHHC--
T ss_pred HH-HHHHHHHHHHHhc
Confidence 86 5778899999985
No 117
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=98.90 E-value=3.4e-10 Score=99.87 Aligned_cols=40 Identities=30% Similarity=0.402 Sum_probs=37.7
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
..+++++ |+|.+||+++|+|+||||||||+++|+|+.+++
T Consensus 59 ~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~ 98 (347)
T 2obl_A 59 VRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASAD 98 (347)
T ss_dssp CHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred CEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 4589999 999999999999999999999999999998875
No 118
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=98.87 E-value=2.3e-10 Score=101.67 Aligned_cols=39 Identities=18% Similarity=0.335 Sum_probs=36.5
Q ss_pred cceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 244 ILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 244 il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
+++++++.+++|++++|+|+||||||||+++|+|+++++
T Consensus 164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~ 202 (361)
T 2gza_A 164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFD 202 (361)
T ss_dssp HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTT
T ss_pred HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 349999999999999999999999999999999998874
No 119
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=98.86 E-value=1.7e-10 Score=101.18 Aligned_cols=40 Identities=18% Similarity=0.350 Sum_probs=37.7
Q ss_pred ccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 243 EILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 243 ~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
++++++++.+++|++++|+|+||||||||+++|+|+++++
T Consensus 159 ~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~ 198 (330)
T 2pt7_A 159 QAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKE 198 (330)
T ss_dssp HHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTT
T ss_pred HHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCC
Confidence 3789999999999999999999999999999999999875
No 120
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=98.86 E-value=2.4e-10 Score=104.42 Aligned_cols=37 Identities=27% Similarity=0.289 Sum_probs=34.3
Q ss_pred ceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCC
Q psy8953 245 LHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYL 281 (286)
Q Consensus 245 l~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~ 281 (286)
+.++++++.+||+++|+||||||||||+|+|+|++++
T Consensus 128 y~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p 164 (460)
T 2npi_A 128 LEKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALK 164 (460)
T ss_dssp HHHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHH
T ss_pred hhcCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccc
Confidence 4578999999999999999999999999999999865
No 121
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.86 E-value=4.1e-10 Score=101.30 Aligned_cols=38 Identities=24% Similarity=0.284 Sum_probs=33.6
Q ss_pred ccccceeeeeEEeCCCE--EEEEcCCCCcHHHHHHHHHcCC
Q psy8953 241 NKEILHGISGEFKAGQL--TAIMGPSGAGKSTLLNILAGLT 279 (286)
Q Consensus 241 ~~~il~~~~l~i~~Ge~--~aivG~NGsGKSTLl~~l~GL~ 279 (286)
... |+++|+++++|++ ++|+|+||||||||+++|+|+.
T Consensus 27 ~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 27 SLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp --C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred Cee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence 345 9999999999999 9999999999999999999984
No 122
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.85 E-value=4.1e-10 Score=97.50 Aligned_cols=37 Identities=27% Similarity=0.311 Sum_probs=33.8
Q ss_pred eeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 246 HGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 246 ~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
..+++++.+|++++|+|+||||||||++.|+|+++++
T Consensus 91 ~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~ 127 (302)
T 3b9q_A 91 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE 127 (302)
T ss_dssp CSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred cccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 5678889999999999999999999999999998764
No 123
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=98.81 E-value=8.9e-10 Score=100.11 Aligned_cols=40 Identities=28% Similarity=0.394 Sum_probs=37.7
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
..+|+++ |+|.+||+++|+|+||||||||+++|+|+.+++
T Consensus 145 ~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~ 184 (438)
T 2dpy_A 145 VRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRAD 184 (438)
T ss_dssp CHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred ceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCC
Confidence 4589999 999999999999999999999999999998875
No 124
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=98.80 E-value=8e-10 Score=98.32 Aligned_cols=62 Identities=18% Similarity=0.268 Sum_probs=56.1
Q ss_pred hcccCCccc-------------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHhhhHh
Q psy8953 84 NNFCKKKKK-------------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVATIHTPSALLFEKFDSLY 138 (286)
Q Consensus 84 ~~~~gG~kq-------------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~~~~~~~~~~d~v~ 138 (286)
.++||||+| ||++||+.++..++++|+++++.|.|||+++|+++. ...+|+++
T Consensus 278 ~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~--~~~~d~~~ 355 (365)
T 3qf7_A 278 RGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREF--SEAFDRKL 355 (365)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHH--HTTCSCEE
T ss_pred hhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHH--HHhCCEEE
Confidence 468999998 999999999999999999998889999999999853 57799999
Q ss_pred hhcCCeeec
Q psy8953 139 ALAKGHCIY 147 (286)
Q Consensus 139 ~l~~G~i~~ 147 (286)
+|++|+++.
T Consensus 356 ~l~~G~i~~ 364 (365)
T 3qf7_A 356 RITGGVVVN 364 (365)
T ss_dssp EEETTEEC-
T ss_pred EEECCEEEe
Confidence 999999975
No 125
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=98.79 E-value=1e-10 Score=103.19 Aligned_cols=142 Identities=12% Similarity=0.135 Sum_probs=94.7
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCch-------hhhcccceeeEEecCcc-cCCCCCHHHHHHHHHhc-CCCCCCC
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSA-------CIEQFLKLSCYIQQDDA-LRPKLTVTEAMMIASHL-KLGFKVS 70 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~-------~~~~~~~~~g~v~Q~~~-~~~~~tV~e~l~f~~~~-~~~~~~~ 70 (286)
||||+++ +|.... -.|.|.++|++.... ....+.+.+.|++|.+. .....++.++....++. +-
T Consensus 84 KTTLl~~I~g~~~~-~~g~i~~~G~~~~ev~~~i~~~~~~~~~~~v~~~~~~~~~~~~r~~~~~~~~~~ae~~~~----- 157 (347)
T 2obl_A 84 KSTLLGMICNGASA-DIIVLALIGERGREVNEFLALLPQSTLSKCVLVVTTSDRPALERMKAAFTATTIAEYFRD----- 157 (347)
T ss_dssp HHHHHHHHHHHSCC-SEEEEEEESCCHHHHHHHHTTSCHHHHTTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHhcCCCC-CEEEEEEecccHHHHHHHHHhhhhhhhhceEEEEECCCCCHHHHHHHHHHHHHHHHHHHh-----
Confidence 8999999 996544 478999999763211 00124577899998753 12222333333322321 00
Q ss_pred HHHHHHHHh--hhhhhcccCCccc--------c-CCCcchHHHHHHHHHHHHHHh--CCC-----EEEEEEcCCCHHHHH
Q psy8953 71 TQEKKDQVS--LELWNNFCKKKKK--------K-KRGLDSSSCSQCVSLLANLAK--QGR-----TVVATIHTPSALLFE 132 (286)
Q Consensus 71 ~~~~~~~v~--l~~~~~~~gG~kq--------p-tsgLD~~~~~~~~~~l~~l~~--~g~-----tii~~~h~~~~~~~~ 132 (286)
..+.|. ++....+++||++ | |+||||....++.++++++.. .|. ||++++|+.++ .
T Consensus 158 ---~~~~vl~~ld~~~~lS~g~r~v~lal~~p~~t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~~---~ 231 (347)
T 2obl_A 158 ---QGKNVLLMMDSVTRYARAARDVGLASGEPDVRGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVND---P 231 (347)
T ss_dssp ---TTCEEEEEEETHHHHHHHHHHHHHHTTCCCCBTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCCC---H
T ss_pred ---ccccHHHHHhhHHHHHHHHHHHHHHcCCCCcccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCCC---h
Confidence 001111 1134456677744 4 689999999999999999975 487 89999999984 4
Q ss_pred HhhhHhhhcCCeeecccChhcH
Q psy8953 133 KFDSLYALAKGHCIYRGSISRL 154 (286)
Q Consensus 133 ~~d~v~~l~~G~i~~~g~~~~~ 154 (286)
.+|+++++.+|+|+.++++.+.
T Consensus 232 i~d~v~~i~dG~Ivl~~~l~~~ 253 (347)
T 2obl_A 232 IGDEVRSILDGHIVLTRELAEE 253 (347)
T ss_dssp HHHHHHHHCSEEEEBCHHHHTT
T ss_pred hhhheEEeeCcEEEEeCCHHHc
Confidence 5999999999999999876544
No 126
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=98.79 E-value=5.5e-10 Score=97.16 Aligned_cols=31 Identities=23% Similarity=0.198 Sum_probs=29.2
Q ss_pred EeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 252 FKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 252 i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
+.+|++++|+|+||||||||+++|+|++++.
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~ 117 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARW 117 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTS
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhcccc
Confidence 7899999999999999999999999998763
No 127
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.78 E-value=1.2e-09 Score=103.28 Aligned_cols=150 Identities=14% Similarity=0.106 Sum_probs=89.8
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCch---hhhcccceeeEEecCcccCCCCCHHHHHHHHHhc-CC-CCCCCHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSA---CIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHL-KL-GFKVSTQEK 74 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~---~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~-~~-~~~~~~~~~ 74 (286)
|||||++ +|+.....+|.|+++|.++... ....+++.+|||+|++.+++.+||+|++.++.+. +. +...+.
T Consensus 58 KSTLL~~I~Gl~~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~~~~~~~s~--- 134 (608)
T 3szr_A 58 KSSVLEALSGVALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIAGEGMGISH--- 134 (608)
T ss_dssp HHHHHHHHHSCC-------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHHCSSSCCCS---
T ss_pred HHHHHHHHhCCCCCCCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHhcCCccccch---
Confidence 8999999 9975443689999999986321 1245778999999999999999999999998752 11 111111
Q ss_pred HHHHhhh----------hhhcccCCccccCCCcchHHHHHHHHHHHHHHh-C-CCEEEEEEcCCCHH---HHHHhhh---
Q psy8953 75 KDQVSLE----------LWNNFCKKKKKKKRGLDSSSCSQCVSLLANLAK-Q-GRTVVATIHTPSAL---LFEKFDS--- 136 (286)
Q Consensus 75 ~~~v~l~----------~~~~~~gG~kqptsgLD~~~~~~~~~~l~~l~~-~-g~tii~~~h~~~~~---~~~~~d~--- 136 (286)
+.+.+. ..|. .|--+.||++||+..+.++.++++.+.. . +++++++.|+.+.. ...++++
T Consensus 135 -~~i~l~i~~~~~p~LlLlDe-PGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~ 212 (608)
T 3szr_A 135 -ELITLEISSRDVPDLTLIDL-PGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDP 212 (608)
T ss_dssp -CCEEEEEEESSSCCEEEEEC-CC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCS
T ss_pred -HHHHHHhcCCCCCceeEeeC-CCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhh
Confidence 111111 0011 1322335999999999999999999754 3 77888899987621 1222332
Q ss_pred -----HhhhcCCeeecccChhcHH
Q psy8953 137 -----LYALAKGHCIYRGSISRLV 155 (286)
Q Consensus 137 -----v~~l~~G~i~~~g~~~~~~ 155 (286)
|+|+.++.++..|+.+++.
T Consensus 213 ~g~rtI~VlTK~Dlv~~g~~~~~~ 236 (608)
T 3szr_A 213 EGDRTIGILTKPDLVDKGTEDKVV 236 (608)
T ss_dssp SCCSEEEEEECGGGSSSSSTTCCC
T ss_pred cCCceEEEecchhhcCcccHHHHH
Confidence 4566777777777665443
No 128
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.77 E-value=1.1e-09 Score=96.75 Aligned_cols=37 Identities=27% Similarity=0.311 Sum_probs=33.5
Q ss_pred eeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 246 HGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 246 ~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
..+++++.+|++++|+|+||||||||++.|+|+++++
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~ 184 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE 184 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhcccc
Confidence 3568889999999999999999999999999998764
No 129
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.77 E-value=1.2e-09 Score=99.72 Aligned_cols=38 Identities=26% Similarity=0.205 Sum_probs=35.0
Q ss_pred ceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 245 LHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 245 l~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
.+++||++.+|++++|+|+||||||||+++|+|+++++
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~ 320 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQ 320 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhc
Confidence 46889999999999999999999999999999998754
No 130
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.76 E-value=1e-09 Score=102.36 Aligned_cols=40 Identities=28% Similarity=0.353 Sum_probs=37.0
Q ss_pred cccceeeee-EEeCCCEEEEEcCCCCcHHHHHHH--HHcCCCC
Q psy8953 242 KEILHGISG-EFKAGQLTAIMGPSGAGKSTLLNI--LAGLTYL 281 (286)
Q Consensus 242 ~~il~~~~l-~i~~Ge~~aivG~NGsGKSTLl~~--l~GL~~~ 281 (286)
..+|+++++ .|++||+++|+|+||||||||+++ ++|++++
T Consensus 25 ~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~ 67 (525)
T 1tf7_A 25 IEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEF 67 (525)
T ss_dssp CTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHH
T ss_pred chhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhC
Confidence 458999999 999999999999999999999999 7898764
No 131
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.74 E-value=7.6e-10 Score=97.39 Aligned_cols=40 Identities=23% Similarity=0.361 Sum_probs=37.1
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYL 281 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~ 281 (286)
..+++++++++.+|++++|+|+||||||||+++|+|++++
T Consensus 42 ~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~ 81 (337)
T 2qm8_A 42 RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTA 81 (337)
T ss_dssp HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 4589999999999999999999999999999999998754
No 132
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.71 E-value=6.7e-10 Score=99.88 Aligned_cols=130 Identities=11% Similarity=-0.010 Sum_probs=93.0
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
||||+|+ +|+.+. .+|+|.++|.+.. + .+||+|++ .++.+||.|++.|+.. ....++..+++.
T Consensus 82 KSTLln~L~Gl~~p-~~GsI~~~g~~~t--------~-~~~v~q~~-~~~~ltv~D~~g~~~~-----~~~~~~~L~~~~ 145 (413)
T 1tq4_A 82 KSSFINTLRGIGNE-EEGAAKTGVVEVT--------M-ERHPYKHP-NIPNVVFWDLPGIGST-----NFPPDTYLEKMK 145 (413)
T ss_dssp HHHHHHHHHTCCTT-STTSCCCCC------------C-CCEEEECS-SCTTEEEEECCCGGGS-----SCCHHHHHHHTT
T ss_pred HHHHHHHHhCCCCc-cCceEEECCeecc--------e-eEEecccc-ccCCeeehHhhcccch-----HHHHHHHHHHcC
Confidence 8999999 997544 6789999997642 1 28999986 5778899888766532 223455555555
Q ss_pred hh----hhhcccCC--ccc-----------------------------cCCCcchHHHHHHHHHHHHHH-----hCC---
Q psy8953 80 LE----LWNNFCKK--KKK-----------------------------KKRGLDSSSCSQCVSLLANLA-----KQG--- 116 (286)
Q Consensus 80 l~----~~~~~~gG--~kq-----------------------------ptsgLD~~~~~~~~~~l~~l~-----~~g--- 116 (286)
+. ... ++|| |+| ||++||+.++.++++.|+++. +.|
T Consensus 146 L~~~~~~~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~ 224 (413)
T 1tq4_A 146 FYEYDFFII-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAE 224 (413)
T ss_dssp GGGCSEEEE-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSS
T ss_pred CCccCCeEE-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 43 222 7788 777 999999999999999999985 323
Q ss_pred -CEEEEEEcCCCH-HHHHHhhhHh-hhcCCeeec
Q psy8953 117 -RTVVATIHTPSA-LLFEKFDSLY-ALAKGHCIY 147 (286)
Q Consensus 117 -~tii~~~h~~~~-~~~~~~d~v~-~l~~G~i~~ 147 (286)
.+|+++.|..+. .+-.++|++. .|..|...+
T Consensus 225 ~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~~~~ 258 (413)
T 1tq4_A 225 PPIFLLSNKNVCHYDFPVLMDKLISDLPIYKRHN 258 (413)
T ss_dssp CCEEECCTTCTTSTTHHHHHHHHHHHSCGGGHHH
T ss_pred CcEEEEecCcCCccCHHHHHHHHHHhCccchhhH
Confidence 567888998764 2567799997 677787555
No 133
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=98.71 E-value=2.2e-09 Score=95.52 Aligned_cols=39 Identities=31% Similarity=0.360 Sum_probs=35.7
Q ss_pred cceeeeeEEeC--CCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 244 ILHGISGEFKA--GQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 244 il~~~~l~i~~--Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
+.+.|+++|++ |+.++|+|+||||||||+++|+|+++++
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 45678999999 9999999999999999999999998875
No 134
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.71 E-value=1.4e-09 Score=94.60 Aligned_cols=38 Identities=21% Similarity=0.225 Sum_probs=34.4
Q ss_pred ccceeeeeEE-------------------eCCCEEEEEcCCCCcHHHHHHHHHcCCC
Q psy8953 243 EILHGISGEF-------------------KAGQLTAIMGPSGAGKSTLLNILAGLTY 280 (286)
Q Consensus 243 ~il~~~~l~i-------------------~~Ge~~aivG~NGsGKSTLl~~l~GL~~ 280 (286)
++++++++.+ .+|++++|+|+||||||||+++|+|++.
T Consensus 49 ~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 49 PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4678888877 8999999999999999999999999876
No 135
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=98.70 E-value=1.7e-09 Score=93.31 Aligned_cols=40 Identities=20% Similarity=0.129 Sum_probs=36.9
Q ss_pred ccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 243 EILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 243 ~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
.+|+++++.+++|++++|+|+||||||||++.|+|++.++
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~ 62 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTA 62 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 4799999999999999999999999999999999987654
No 136
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.68 E-value=7.4e-09 Score=86.65 Aligned_cols=28 Identities=29% Similarity=0.532 Sum_probs=26.5
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHH--cC
Q psy8953 251 EFKAGQLTAIMGPSGAGKSTLLNILA--GL 278 (286)
Q Consensus 251 ~i~~Ge~~aivG~NGsGKSTLl~~l~--GL 278 (286)
.|++||+++|+||||||||||+++|+ |+
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~ 55 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGA 55 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999999999999 65
No 137
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=98.66 E-value=3.4e-09 Score=95.76 Aligned_cols=38 Identities=29% Similarity=0.385 Sum_probs=35.3
Q ss_pred ccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCC
Q psy8953 243 EILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYL 281 (286)
Q Consensus 243 ~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~ 281 (286)
.++++++|++.+| +++|+|+||||||||+++|+++...
T Consensus 49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~ 86 (415)
T 4aby_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGG 86 (415)
T ss_dssp TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTC
T ss_pred cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4799999999999 9999999999999999999988753
No 138
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.65 E-value=2.6e-09 Score=93.45 Aligned_cols=60 Identities=17% Similarity=0.208 Sum_probs=50.3
Q ss_pred hcccCCccc-----------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHhhhH--h
Q psy8953 84 NNFCKKKKK-----------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVATIHTPSALLFEKFDSL--Y 138 (286)
Q Consensus 84 ~~~~gG~kq-----------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~~~~~~~~~~d~v--~ 138 (286)
..+|||||| ||++||+..+..++++|+++. .|.|+|+++|+++ +...+|++ +
T Consensus 218 ~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~tH~~~--~~~~~d~~~~v 294 (322)
T 1e69_A 218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-KHTQFIVITHNKI--VMEAADLLHGV 294 (322)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-TTSEEEEECCCTT--GGGGCSEEEEE
T ss_pred hhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEECCHH--HHhhCceEEEE
Confidence 468899988 999999999999999999985 4889999999964 45779986 7
Q ss_pred hhcCCeee
Q psy8953 139 ALAKGHCI 146 (286)
Q Consensus 139 ~l~~G~i~ 146 (286)
+|.+|...
T Consensus 295 ~~~~g~s~ 302 (322)
T 1e69_A 295 TMVNGVSA 302 (322)
T ss_dssp EESSSCEE
T ss_pred EEeCCEEE
Confidence 77777543
No 139
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=98.61 E-value=8.1e-09 Score=79.79 Aligned_cols=51 Identities=16% Similarity=0.236 Sum_probs=44.6
Q ss_pred cCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHhhhHhhhc--CCee
Q psy8953 93 KKRGLDSSSCSQCVSLLANLAKQGRTVVATIHTPSALLFEKFDSLYALA--KGHC 145 (286)
Q Consensus 93 ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~~~~~~~~~~d~v~~l~--~G~i 145 (286)
||++||+.++..+.+.|+++.++|.|||+++|+.+ +...+|++++|+ +|..
T Consensus 90 Pt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~--~~~~~d~ii~l~~~~g~s 142 (148)
T 1f2t_B 90 PTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE--LKDAADHVIRISLENGSS 142 (148)
T ss_dssp CSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGG--GGGGCSEEEEEEEETTEE
T ss_pred CCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHH--HHHhCCEEEEEEcCCCeE
Confidence 99999999999999999999877999999999983 457899999994 5543
No 140
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.59 E-value=5.7e-09 Score=96.58 Aligned_cols=41 Identities=17% Similarity=0.183 Sum_probs=37.9
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
..+++++++.+++|+.++|+|+||||||||+++|+|+++++
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~ 287 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPD 287 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTT
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCC
Confidence 34788999999999999999999999999999999999875
No 141
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=98.59 E-value=1.2e-08 Score=100.11 Aligned_cols=38 Identities=21% Similarity=0.278 Sum_probs=34.8
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLT 279 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~ 279 (286)
..+++|++|++.+|++++|+||||||||||+|+++++.
T Consensus 660 ~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~ 697 (918)
T 3thx_B 660 QYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALIT 697 (918)
T ss_dssp SSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHH
T ss_pred ceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHH
Confidence 45899999999999999999999999999999998653
No 142
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=98.58 E-value=2.1e-08 Score=97.31 Aligned_cols=38 Identities=24% Similarity=0.257 Sum_probs=34.8
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTY 280 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~ 280 (286)
+.+++|++|+ .+|++++|+||||||||||+|+|+|+..
T Consensus 595 ~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~ 632 (800)
T 1wb9_A 595 PFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIAL 632 (800)
T ss_dssp CCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHH
Confidence 4589999999 9999999999999999999999999753
No 143
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.57 E-value=7.8e-09 Score=89.20 Aligned_cols=34 Identities=24% Similarity=0.062 Sum_probs=29.9
Q ss_pred eeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCC
Q psy8953 246 HGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYL 281 (286)
Q Consensus 246 ~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~ 281 (286)
++++++ +|++++|+|+||+||||+++.|+|+++.
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~ 124 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKG 124 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHH
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 456666 8999999999999999999999998764
No 144
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.54 E-value=2.2e-08 Score=86.72 Aligned_cols=29 Identities=24% Similarity=0.371 Sum_probs=27.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 254 AGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 254 ~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
+|++++|+|+||||||||++.|+|+++++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~ 129 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL 129 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 69999999999999999999999998875
No 145
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=98.52 E-value=3.2e-08 Score=95.53 Aligned_cols=36 Identities=31% Similarity=0.357 Sum_probs=33.1
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTY 280 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~ 280 (286)
..+++|++|+ |++++|+||||||||||+|+++|+..
T Consensus 566 ~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~ 601 (765)
T 1ewq_A 566 EFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIAL 601 (765)
T ss_dssp CCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred ceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhh
Confidence 4589999998 99999999999999999999999864
No 146
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.52 E-value=5.5e-09 Score=87.91 Aligned_cols=40 Identities=30% Similarity=0.393 Sum_probs=36.6
Q ss_pred cccceeeeeEEeC---CCEEEEEcCCCCcHHHHHHHHHcCCCC
Q psy8953 242 KEILHGISGEFKA---GQLTAIMGPSGAGKSTLLNILAGLTYL 281 (286)
Q Consensus 242 ~~il~~~~l~i~~---Ge~~aivG~NGsGKSTLl~~l~GL~~~ 281 (286)
..+|+++||+|.+ |++++|+|++||||||+++.|++.+..
T Consensus 32 ~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg~ 74 (250)
T 3nwj_A 32 QQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLGY 74 (250)
T ss_dssp CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred chhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 5689999999999 999999999999999999999985544
No 147
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=98.50 E-value=5.9e-08 Score=95.48 Aligned_cols=34 Identities=26% Similarity=0.236 Sum_probs=32.3
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHH
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNIL 275 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l 275 (286)
..+++|++|++.+|++++|+||||||||||+|++
T Consensus 649 ~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 649 AFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp CCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHH
T ss_pred eeecccceeecCCCeEEEEECCCCCCHHHHHHHH
Confidence 3489999999999999999999999999999999
No 148
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.49 E-value=1.5e-08 Score=86.58 Aligned_cols=40 Identities=30% Similarity=0.467 Sum_probs=35.6
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLNF 283 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~~ 283 (286)
..+++++++++++| ++|+||||||||||+++|+|.+.++|
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~~~ 72 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGLNF 72 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTCEE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCCCE
Confidence 45789999999999 99999999999999999999877643
No 149
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=98.48 E-value=3.1e-08 Score=98.46 Aligned_cols=38 Identities=29% Similarity=0.290 Sum_probs=35.0
Q ss_pred cccceeeeeEEeC-------CCEEEEEcCCCCcHHHHHHHHHcCCC
Q psy8953 242 KEILHGISGEFKA-------GQLTAIMGPSGAGKSTLLNILAGLTY 280 (286)
Q Consensus 242 ~~il~~~~l~i~~-------Ge~~aivG~NGsGKSTLl~~l~GL~~ 280 (286)
..+++|++|++.+ |++++|+||||||||||+|.+ ||+.
T Consensus 769 ~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~ 813 (1022)
T 2o8b_B 769 DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLA 813 (1022)
T ss_dssp CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHH
T ss_pred ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHH
Confidence 4589999999987 999999999999999999999 8865
No 150
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.48 E-value=3.2e-08 Score=86.47 Aligned_cols=31 Identities=23% Similarity=0.254 Sum_probs=28.2
Q ss_pred EeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 252 FKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 252 i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
..+|++++|+|+||||||||++.|+|+++++
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~ 156 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNH 156 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 3689999999999999999999999998754
No 151
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.47 E-value=2.4e-08 Score=90.06 Aligned_cols=39 Identities=21% Similarity=0.227 Sum_probs=33.7
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
..+|+++ + ..+|++++|+||||||||||+++|+|++.++
T Consensus 156 ~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~ 194 (418)
T 1p9r_A 156 HDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSS 194 (418)
T ss_dssp HHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCT
T ss_pred HHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCC
Confidence 3477777 5 3899999999999999999999999998764
No 152
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.46 E-value=5.6e-08 Score=78.85 Aligned_cols=30 Identities=30% Similarity=0.329 Sum_probs=24.4
Q ss_pred eEEeCCCEEEEEcCCCCcHHHHHHHHHcCC
Q psy8953 250 GEFKAGQLTAIMGPSGAGKSTLLNILAGLT 279 (286)
Q Consensus 250 l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~ 279 (286)
...++|++++|+|+||||||||++.|+|++
T Consensus 24 m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 24 MTGEPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred hcCCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 566789999999999999999999998753
No 153
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=98.45 E-value=1.9e-08 Score=89.58 Aligned_cols=37 Identities=22% Similarity=0.349 Sum_probs=32.3
Q ss_pred cceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 244 ILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 244 il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
+|++++ +.+|++++|+||||||||||+++|+|+++++
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~ 163 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT 163 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcC
Confidence 566655 7899999999999999999999999987654
No 154
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.43 E-value=5e-08 Score=84.37 Aligned_cols=32 Identities=38% Similarity=0.585 Sum_probs=29.0
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 251 EFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 251 ~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
++.+|++++|+|+||||||||+++|+|+.++.
T Consensus 165 ~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~ 196 (301)
T 1u0l_A 165 EYLKGKISTMAGLSGVGKSSLLNAINPGLKLR 196 (301)
T ss_dssp HHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC
T ss_pred HHhcCCeEEEECCCCCcHHHHHHHhccccccc
Confidence 44579999999999999999999999999875
No 155
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=98.43 E-value=5.5e-09 Score=85.49 Aligned_cols=112 Identities=10% Similarity=-0.066 Sum_probs=57.7
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHH-HHH----HhcCCCCCCCHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAM-MIA----SHLKLGFKVSTQEK 74 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l-~f~----~~~~~~~~~~~~~~ 74 (286)
|||||++ +|+ + ..+|+|. +.+... +...+++.+|||+|++ +|++ .|. ..+. .....+..
T Consensus 35 KSTLl~~l~Gl-~-p~~G~I~--~~~~~~-~~~~~~~~ig~v~q~~--------~enl~~~~~~~~~~~~--~~~~~~~~ 99 (208)
T 3b85_A 35 KTYLAMAKAVQ-A-LQSKQVS--RIILTR-PAVEAGEKLGFLPGTL--------NEKIDPYLRPLHDALR--DMVEPEVI 99 (208)
T ss_dssp TTHHHHHHHHH-H-HHTTSCS--EEEEEE-CSCCTTCCCCSSCC--------------CTTTHHHHHHHT--TTSCTTHH
T ss_pred HHHHHHHHhcC-C-CcCCeee--eEEecC-CchhhhcceEEecCCH--------HHHHHHHHHHHHHHHH--HhccHHHH
Confidence 8999999 998 4 2456652 222211 1123467899999997 3333 221 0111 00111122
Q ss_pred HHHHhhhhhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHhh
Q psy8953 75 KDQVSLELWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQGRTVVATIHTPSALLFEKFD 135 (286)
Q Consensus 75 ~~~v~l~~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~~~~~~~~~~d 135 (286)
.+.++ . ..|||| ||++ ++.+++++|+++ ++|+||| ++|+++. ++
T Consensus 100 ~~~l~--~----glGq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~~l-~~g~tii-vtHd~~~-----~~ 162 (208)
T 3b85_A 100 PKLME--A----GIVEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLTRL-GFGSKMV-VTGDITQ-----VD 162 (208)
T ss_dssp HHHHH--T----TSEEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHTTB-CTTCEEE-EEEC----------
T ss_pred HHHHH--h----CCchHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHHHh-cCCCEEE-EECCHHH-----Hh
Confidence 22221 1 229999 9999 899999999998 6699999 9999753 34
Q ss_pred hHhhhcCCe
Q psy8953 136 SLYALAKGH 144 (286)
Q Consensus 136 ~v~~l~~G~ 144 (286)
+....++|.
T Consensus 163 ~~~~~~~G~ 171 (208)
T 3b85_A 163 LPGGQKSGL 171 (208)
T ss_dssp -------CC
T ss_pred CcCCCCCcH
Confidence 444445553
No 156
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=98.42 E-value=2.5e-10 Score=98.62 Aligned_cols=113 Identities=8% Similarity=0.051 Sum_probs=73.6
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHH-HHHHHHhcCCCCCCCHHHHHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTE-AMMIASHLKLGFKVSTQEKKDQV 78 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e-~l~f~~~~~~~~~~~~~~~~~~v 78 (286)
||||+++ +|+. +|+| ++||+|++.+|.. |++| +|.|..+. + +...+.+
T Consensus 139 KSTLl~lL~gl~----~G~I------------------~~~v~q~~~lf~~-ti~~~ni~~~~~~------~-~~~~~~i 188 (305)
T 2v9p_A 139 KSMLCNSLIHFL----GGSV------------------LSFANHKSHFWLA-SLADTRAALVDDA------T-HACWRYF 188 (305)
T ss_dssp HHHHHHHHHHHH----TCEE------------------ECGGGTTSGGGGG-GGTTCSCEEEEEE------C-HHHHHHH
T ss_pred HHHHHHHHhhhc----CceE------------------EEEecCccccccc-cHHHHhhccCccc------c-HHHHHHH
Confidence 7999999 9865 5666 3567777765543 5555 66554221 1 1222222
Q ss_pred h--hh---hhhcccCCccc--------c----CCCcchHHHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHhhhHhhhc
Q psy8953 79 S--LE---LWNNFCKKKKK--------K----KRGLDSSSCSQCVSLLANLAKQGRTVVATIHTPSALLFEKFDSLYALA 141 (286)
Q Consensus 79 ~--l~---~~~~~~gG~kq--------p----tsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~~~~~~~~~~d~v~~l~ 141 (286)
+ |. ....+|||||| | |++||+.+...+.. + .|+++. ...+|++ +|+
T Consensus 189 ~~~L~~gldg~~LSgGqkQRARAll~~p~iLlTs~LD~~~~~~i~~----l----------tH~~~~--~~~aD~i-vl~ 251 (305)
T 2v9p_A 189 DTYLRNALDGYPVSIDRKHKAAVQIKAPPLLVTSNIDVQAEDRYLY----L----------HSRVQT--FRFEQPC-TDE 251 (305)
T ss_dssp HHTTTGGGGTCCEECCCSSCCCCEECCCCEEEEESSCSTTCGGGGG----G----------TTTEEE--EECCCCC-CCC
T ss_pred HHHhHccCCccCcCHHHHHHHHHHhCCCCEEEECCCCHHHHHHHHH----H----------hCCHHH--HHhCCEE-EEe
Confidence 2 11 24579999999 3 89999999888752 1 677653 3679999 999
Q ss_pred CCeeecccChhcHHHHHHh
Q psy8953 142 KGHCIYRGSISRLVPHLAS 160 (286)
Q Consensus 142 ~G~i~~~g~~~~~~~~~~~ 160 (286)
+|++++.|+++++...+..
T Consensus 252 ~G~iv~~g~~~el~~~y~~ 270 (305)
T 2v9p_A 252 SGEQPFNITDADWKSFFVR 270 (305)
T ss_dssp ---CCCCCCHHHHHHHHHH
T ss_pred CCEEEEeCCHHHHHHHHHH
Confidence 9999999999988544443
No 157
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.39 E-value=1.9e-07 Score=84.13 Aligned_cols=35 Identities=34% Similarity=0.447 Sum_probs=30.8
Q ss_pred ccccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCC
Q psy8953 241 NKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYL 281 (286)
Q Consensus 241 ~~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~ 281 (286)
.+.++++++|+| +|+|+||||||||+++|+|+..+
T Consensus 23 ~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~ 57 (418)
T 2qag_C 23 RKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLY 57 (418)
T ss_dssp TTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCC
T ss_pred CEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCC
Confidence 356899999998 99999999999999999999864
No 158
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.38 E-value=3.4e-08 Score=85.41 Aligned_cols=32 Identities=34% Similarity=0.391 Sum_probs=25.4
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 251 EFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 251 ~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
++.+|++++|+|+||||||||+++|+|++++.
T Consensus 169 ~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~ 200 (307)
T 1t9h_A 169 PHFQDKTTVFAGQSGVGKSSLLNAISPELGLR 200 (307)
T ss_dssp GGGTTSEEEEEESHHHHHHHHHHHHCC-----
T ss_pred hhcCCCEEEEECCCCCCHHHHHHHhccccccc
Confidence 45689999999999999999999999998764
No 159
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.38 E-value=7e-08 Score=85.84 Aligned_cols=37 Identities=24% Similarity=0.313 Sum_probs=34.8
Q ss_pred ccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCC
Q psy8953 243 EILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLT 279 (286)
Q Consensus 243 ~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~ 279 (286)
.+++++++.+++|++++|+||||||||||+++|+|..
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 4799999999999999999999999999999999864
No 160
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.37 E-value=2.3e-07 Score=81.75 Aligned_cols=38 Identities=37% Similarity=0.551 Sum_probs=32.0
Q ss_pred cceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCC-CC
Q psy8953 244 ILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTY-LN 282 (286)
Q Consensus 244 il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~-~~ 282 (286)
.++++++. .+|++++|+|+||||||||+++|+|+++ +.
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~ 243 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEIL 243 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCC
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccc
Confidence 35556554 4799999999999999999999999987 53
No 161
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.35 E-value=4e-08 Score=86.84 Aligned_cols=32 Identities=28% Similarity=0.351 Sum_probs=28.9
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 251 EFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 251 ~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
.+.+|++++|+||||||||||+++|+|+++++
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~ 150 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNT 150 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHH
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhcccCC
Confidence 56789999999999999999999999987654
No 162
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.35 E-value=1e-07 Score=75.87 Aligned_cols=32 Identities=22% Similarity=0.282 Sum_probs=28.4
Q ss_pred eeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCC
Q psy8953 249 SGEFKAGQLTAIMGPSGAGKSTLLNILAGLTY 280 (286)
Q Consensus 249 ~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~ 280 (286)
++.+.+|+.++|+||||+|||||+++|++.+.
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45667899999999999999999999998764
No 163
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.33 E-value=2.1e-07 Score=83.87 Aligned_cols=35 Identities=23% Similarity=0.220 Sum_probs=33.3
Q ss_pred ceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCC
Q psy8953 245 LHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLT 279 (286)
Q Consensus 245 l~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~ 279 (286)
-++++|+++.|+.++|+|+||||||||++.|+|+.
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~ 181 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAH 181 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCC
Confidence 48999999999999999999999999999999984
No 164
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.29 E-value=5.8e-08 Score=84.46 Aligned_cols=40 Identities=25% Similarity=0.337 Sum_probs=33.9
Q ss_pred cccceeeeeEEeCCC------EEEEEcCCCCcHHHHHHHHHcCCCC
Q psy8953 242 KEILHGISGEFKAGQ------LTAIMGPSGAGKSTLLNILAGLTYL 281 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge------~~aivG~NGsGKSTLl~~l~GL~~~ 281 (286)
...|++++..+..++ +++|+|+||||||||+++|+++++.
T Consensus 73 ~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~ 118 (321)
T 3tqc_A 73 RQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSR 118 (321)
T ss_dssp HHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 446777777777776 9999999999999999999999763
No 165
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.28 E-value=5e-09 Score=86.45 Aligned_cols=128 Identities=9% Similarity=0.051 Sum_probs=86.6
Q ss_pred Cchhhhh-cCCCCC-CceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCH----HHHHHHHHhcCCCCCCCHHHH
Q psy8953 1 MSIELNV-QSIRLT-GSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTV----TEAMMIASHLKLGFKVSTQEK 74 (286)
Q Consensus 1 ~stll~~-~g~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV----~e~l~f~~~~~~~~~~~~~~~ 74 (286)
||||+++ +|..+. ..+|+|.+++.++.. ..++.++|+||++..|..+++ .|++.|.... .+.+.+++
T Consensus 29 KSTLlk~L~g~~~p~~~~g~v~~ttr~~~~----~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~~~~---yg~~~~~v 101 (219)
T 1s96_A 29 KSSLIQALLKTQPLYDTQVSVSHTTRQPRP----GEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFGNY---YGTSREAI 101 (219)
T ss_dssp HHHHHHHHHHHSCTTTEEECCCEECSCCCT----TCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEE---EEEEHHHH
T ss_pred HHHHHHHHhccCCCCceEEEEEecCCCCCc----ccccCceEEECCHHHHHHHHhcCHHHHHHHHHhcc---CCCCHHHH
Confidence 7999999 997653 589999999876543 234679999999988888888 5655543321 12344444
Q ss_pred HHHHhhhhhhcccCCccccCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHhhhHhhhcCCeeecccChhcH
Q psy8953 75 KDQVSLELWNNFCKKKKKKKRGLDSSSCSQCVSLLANLAKQGRTVVATIHTPSALLFEKFDSLYALAKGHCIYRGSISRL 154 (286)
Q Consensus 75 ~~~v~l~~~~~~~gG~kqptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 154 (286)
.+.++. | +--.-.||+.++.++.+.+. ++.||+++.|+++. + ..|+ +.+| .++++++
T Consensus 102 ~~~l~~--------G-~illLDLD~~~~~~i~~~l~----~~~tI~i~th~~~~-l---~~Rl--~~rG----~~~~e~i 158 (219)
T 1s96_A 102 EQVLAT--------G-VDVFLDIDWQGAQQIRQKMP----HARSIFILPPSKIE-L---DRRL--RGRG----QDSEEVI 158 (219)
T ss_dssp HHHHTT--------T-CEEEEECCHHHHHHHHHHCT----TCEEEEEECSSHHH-H---HHHH--HTTS----CSCHHHH
T ss_pred HHHHhc--------C-CeEEEEECHHHHHHHHHHcc----CCEEEEEECCCHHH-H---HHHH--HHcC----CCCHHHH
Confidence 444431 1 00111399999999998876 58899999999753 3 3353 7777 5677776
Q ss_pred HHHH
Q psy8953 155 VPHL 158 (286)
Q Consensus 155 ~~~~ 158 (286)
...+
T Consensus 159 ~~rl 162 (219)
T 1s96_A 159 AKRM 162 (219)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6433
No 166
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.27 E-value=1.1e-07 Score=80.01 Aligned_cols=36 Identities=28% Similarity=0.556 Sum_probs=32.8
Q ss_pred ccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCC
Q psy8953 243 EILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTY 280 (286)
Q Consensus 243 ~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~ 280 (286)
.+++++++++++| ++|+||||+|||||+++|++.++
T Consensus 39 ~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 39 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp HHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT
T ss_pred HHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC
Confidence 4788889999999 89999999999999999999765
No 167
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.26 E-value=1.3e-07 Score=80.74 Aligned_cols=36 Identities=28% Similarity=0.556 Sum_probs=32.9
Q ss_pred ccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCC
Q psy8953 243 EILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTY 280 (286)
Q Consensus 243 ~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~ 280 (286)
.+++++++++++| ++|+||||+|||||+++|++.++
T Consensus 63 ~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 63 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp HHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT
T ss_pred HHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC
Confidence 4788899999999 89999999999999999999765
No 168
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.24 E-value=3.7e-07 Score=70.50 Aligned_cols=32 Identities=34% Similarity=0.499 Sum_probs=28.1
Q ss_pred cceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCC
Q psy8953 244 ILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTY 280 (286)
Q Consensus 244 il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~ 280 (286)
+|+.+ +|+.++|+|+||+|||||+++++|.+.
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~ 61 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQAL 61 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHH
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45555 899999999999999999999998764
No 169
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.23 E-value=2.3e-08 Score=79.12 Aligned_cols=84 Identities=11% Similarity=0.104 Sum_probs=56.8
Q ss_pred eeEEecCcc-cCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHhhhhhhcccCCccc-------------------cCCCc
Q psy8953 38 SCYIQQDDA-LRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVSLELWNNFCKKKKK-------------------KKRGL 97 (286)
Q Consensus 38 ~g~v~Q~~~-~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~l~~~~~~~gG~kq-------------------ptsgL 97 (286)
.|+++|++. ++..-++.+++.+.++..+..+. .+.+...+..+||||| ||++|
T Consensus 42 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-------~~~~~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~L 114 (171)
T 4gp7_A 42 RGLMSDDENDQTVTGAAFDVLHYIVSKRLQLGK-------LTVVDATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVC 114 (171)
T ss_dssp HHHHCSSTTCGGGHHHHHHHHHHHHHHHHHTTC-------CEEEESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHH
T ss_pred HHHhcCcccchhhHHHHHHHHHHHHHHHHhCCC-------eEEEECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHH
Confidence 489999974 55556677776665531110000 0001122334577777 99999
Q ss_pred chH----------------HHHHHHHHHHHHHhCCCEEEEEEcCCCH
Q psy8953 98 DSS----------------SCSQCVSLLANLAKQGRTVVATIHTPSA 128 (286)
Q Consensus 98 D~~----------------~~~~~~~~l~~l~~~g~tii~~~h~~~~ 128 (286)
|+. ++.++++.|++++++|.|+|+++|+++.
T Consensus 115 d~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~ 161 (171)
T 4gp7_A 115 QERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEE 161 (171)
T ss_dssp HHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHH
T ss_pred HHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHH
Confidence 999 6699999999998789999999999753
No 170
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=98.23 E-value=6.9e-07 Score=68.99 Aligned_cols=31 Identities=39% Similarity=0.603 Sum_probs=25.2
Q ss_pred eeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcC
Q psy8953 247 GISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278 (286)
Q Consensus 247 ~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL 278 (286)
+.++++.+| +++|+|||||||||++.+|+-+
T Consensus 16 ~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~~ 46 (149)
T 1f2t_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAILVG 46 (149)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEcCCC-eEEEECCCCCCHHHHHHHHHHH
Confidence 345566655 9999999999999999999743
No 171
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.23 E-value=7e-07 Score=77.20 Aligned_cols=30 Identities=37% Similarity=0.603 Sum_probs=26.8
Q ss_pred EeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 252 FKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 252 i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
+.+|++++|+|+||||||||+++|+ ++++.
T Consensus 162 ~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~ 191 (302)
T 2yv5_A 162 YLEGFICILAGPSGVGKSSILSRLT-GEELR 191 (302)
T ss_dssp HTTTCEEEEECSTTSSHHHHHHHHH-SCCCC
T ss_pred hccCcEEEEECCCCCCHHHHHHHHH-HhhCc
Confidence 3469999999999999999999999 88764
No 172
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.23 E-value=3.9e-08 Score=78.88 Aligned_cols=134 Identities=12% Similarity=0.032 Sum_probs=84.4
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCC--------CCCH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGF--------KVST 71 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~--------~~~~ 71 (286)
||||++. ++ ..+|+++++|.+... ....||++|.+......+|.+++.+.++..... ....
T Consensus 15 KSTl~~~L~~----~~~g~~~i~~d~~~~------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ild~~~~~ 84 (189)
T 2bdt_A 15 KSTTCKRLAA----QLDNSAYIEGDIINH------MVVGGYRPPWESDELLALTWKNITDLTVNFLLAQNDVVLDYIAFP 84 (189)
T ss_dssp HHHHHHHHHH----HSSSEEEEEHHHHHT------TCCTTCCCGGGCHHHHHHHHHHHHHHHHHHHHTTCEEEEESCCCH
T ss_pred HHHHHHHHhc----ccCCeEEEcccchhh------hhccccccCccchhHHHHHHHHHHHHHHHHHhcCCcEEEeeccCH
Confidence 7999999 86 246889999865432 134688888775567789999998876521100 0112
Q ss_pred HHHHHHHhhhhhhcc--cCCccc---------------------c-CCCcchHHHHHHHHHHHHHHhCCCEEEEEEcC-C
Q psy8953 72 QEKKDQVSLELWNNF--CKKKKK---------------------K-KRGLDSSSCSQCVSLLANLAKQGRTVVATIHT-P 126 (286)
Q Consensus 72 ~~~~~~v~l~~~~~~--~gG~kq---------------------p-tsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~-~ 126 (286)
...+ .+. .+ |+|+++ + -.+||+..... ++.++.+.+.+.++|.+.|. +
T Consensus 85 ~~~~-~~~-----~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~~ld~~~~~~-~~~~~~~~~~~~~ii~tsh~~~ 157 (189)
T 2bdt_A 85 DEAE-ALA-----QTVQAKVDDVEIRFIILWTNREELLRRDALRKKDEQMGERCLEL-VEEFESKGIDERYFYNTSHLQP 157 (189)
T ss_dssp HHHH-HHH-----HHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC----CGGGGHH-HHHHHHTTCCTTSEEECSSSCG
T ss_pred HHHH-HHH-----HHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccccCCHHHHHH-HHHHhhcCCCccEEEeCCCCCh
Confidence 1111 110 01 344433 1 14789988888 88888886668899999998 7
Q ss_pred CHHHHHHhhhHhhhcCCeeecccChhcH
Q psy8953 127 SALLFEKFDSLYALAKGHCIYRGSISRL 154 (286)
Q Consensus 127 ~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 154 (286)
++ +.+.+|+|+ ++|++++.|+++-+
T Consensus 158 ~~-~e~~~~~i~--~~g~~~~~~~~~~~ 182 (189)
T 2bdt_A 158 TN-LNDIVKNLK--TNPRFIFCMAGDPL 182 (189)
T ss_dssp GG-HHHHHHHHH--HCGGGSCC------
T ss_pred hh-HHHHHHHHh--hCCcEEEeecCCch
Confidence 54 668899998 99999999987644
No 173
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.22 E-value=2.5e-08 Score=79.56 Aligned_cols=48 Identities=21% Similarity=0.090 Sum_probs=34.5
Q ss_pred cCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcC--CCHHHHHHhhhHhhhcCCeeec
Q psy8953 93 KKRGLDSSSCSQCVSLLANLAKQGRTVVATIHT--PSALLFEKFDSLYALAKGHCIY 147 (286)
Q Consensus 93 ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~--~~~~~~~~~d~v~~l~~G~i~~ 147 (286)
||++||+.....+.+++++ .+.|+|+++|+ ....+..++| -.+|+++.
T Consensus 110 p~~~ld~~~~~~l~~~l~~---~~~~~i~~~H~~h~~~~~~~i~~----r~~~~i~~ 159 (178)
T 1ye8_A 110 KMELFSKKFRDLVRQIMHD---PNVNVVATIPIRDVHPLVKEIRR----LPGAVLIE 159 (178)
T ss_dssp TTGGGCHHHHHHHHHHHTC---TTSEEEEECCSSCCSHHHHHHHT----CTTCEEEE
T ss_pred CcccCCHHHHHHHHHHHhc---CCCeEEEEEccCCCchHHHHHHh----cCCcEEEE
Confidence 9999999999988888765 47789999973 2233333344 36678775
No 174
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=98.20 E-value=3.6e-06 Score=73.64 Aligned_cols=112 Identities=11% Similarity=0.121 Sum_probs=78.8
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
|||||++ +|+.+. .+|.|.++|.+... ....++.++|++| ...+.+..|+.++..+ |
T Consensus 184 KTTll~~l~g~~~~-~~g~i~i~~~~e~~--~~~~~~~i~~~~g-----gg~~~r~~la~aL~~~-p------------- 241 (330)
T 2pt7_A 184 KTTYIKSIMEFIPK-EERIISIEDTEEIV--FKHHKNYTQLFFG-----GNITSADCLKSCLRMR-P------------- 241 (330)
T ss_dssp HHHHHHHGGGGSCT-TSCEEEEESSCCCC--CSSCSSEEEEECB-----TTBCHHHHHHHHTTSC-C-------------
T ss_pred HHHHHHHHhCCCcC-CCcEEEECCeeccc--cccchhEEEEEeC-----CChhHHHHHHHHhhhC-C-------------
Confidence 8999999 997654 58999999975322 1235677899986 6678888888777521 1
Q ss_pred hhhhhcccCCccccCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHhhhHhhhcCCeeeccc
Q psy8953 80 LELWNNFCKKKKKKKRGLDSSSCSQCVSLLANLAKQGRTVVATIHTPSALLFEKFDSLYALAKGHCIYRG 149 (286)
Q Consensus 80 l~~~~~~~gG~kqptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~~~~~~~~~~d~v~~l~~G~i~~~g 149 (286)
+.+.=|| ||+ .++.++|+.+...+.|+++++|+++ ....+||+++|.+|.....+
T Consensus 242 ----~ilildE--~~~-------~e~~~~l~~~~~g~~tvi~t~H~~~--~~~~~dri~~l~~g~~~~~~ 296 (330)
T 2pt7_A 242 ----DRIILGE--LRS-------SEAYDFYNVLCSGHKGTLTTLHAGS--SEEAFIRLANMSSSNSAARN 296 (330)
T ss_dssp ----SEEEECC--CCS-------THHHHHHHHHHTTCCCEEEEEECSS--HHHHHHHHHHHHHTSGGGTT
T ss_pred ----CEEEEcC--CCh-------HHHHHHHHHHhcCCCEEEEEEcccH--HHHHhhhheehhcCCcccCC
Confidence 1111111 665 2467788888765668999999987 45789999999988754333
No 175
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=98.19 E-value=7.8e-07 Score=75.89 Aligned_cols=30 Identities=40% Similarity=0.517 Sum_probs=27.0
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHHcCCC
Q psy8953 251 EFKAGQLTAIMGPSGAGKSTLLNILAGLTY 280 (286)
Q Consensus 251 ~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~ 280 (286)
.+++|++++|+|+||||||||++.|++.+.
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 478999999999999999999999997543
No 176
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.19 E-value=3.9e-07 Score=80.41 Aligned_cols=35 Identities=29% Similarity=0.529 Sum_probs=31.3
Q ss_pred ceee-eeEEeCCCEEEEEcCCCCcHHHHHHHHHcCC
Q psy8953 245 LHGI-SGEFKAGQLTAIMGPSGAGKSTLLNILAGLT 279 (286)
Q Consensus 245 l~~~-~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~ 279 (286)
|+.+ ++.|++|++++|+|+||||||||++.|+|+.
T Consensus 120 LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 120 LDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp HHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4444 5789999999999999999999999999987
No 177
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.16 E-value=9.4e-08 Score=84.39 Aligned_cols=135 Identities=15% Similarity=0.110 Sum_probs=81.6
Q ss_pred Cchhhhh-cCCC--C---CCceeE-EEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHH
Q psy8953 1 MSIELNV-QSIR--L---TGSSGK-ILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQE 73 (286)
Q Consensus 1 ~stll~~-~g~~--~---~~~~G~-i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~ 73 (286)
||||+.. ++.. + ++..|. |+|++.+.. ..+.++|++|+..+++. +|.+++.|... .....
T Consensus 144 KTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~------~~~~i~~i~q~~~~~~~-~v~~ni~~~~~------~~~~~ 210 (349)
T 1pzn_A 144 KTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF------RPERIREIAQNRGLDPD-EVLKHIYVARA------FNSNH 210 (349)
T ss_dssp HHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC------CHHHHHHHHHTTTCCHH-HHGGGEEEEEC------CSHHH
T ss_pred HHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC------CHHHHHHHHHHcCCCHH-HHhhCEEEEec------CChHH
Confidence 7999999 8753 2 234578 999997642 13567889998765544 67776655432 22344
Q ss_pred HHHHHh-hh-hhhcccCCccc--------cCCCcchHH------------HHHHHHHHHHHHh-CCCEEEEEEcCCCHHH
Q psy8953 74 KKDQVS-LE-LWNNFCKKKKK--------KKRGLDSSS------------CSQCVSLLANLAK-QGRTVVATIHTPSALL 130 (286)
Q Consensus 74 ~~~~v~-l~-~~~~~~gG~kq--------ptsgLD~~~------------~~~~~~~l~~l~~-~g~tii~~~h~~~~~~ 130 (286)
..+++. +. ....+|||+.+ ||+.||+.. ..+++..|+++++ .|+|||++.|.... +
T Consensus 211 ~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~-~ 289 (349)
T 1pzn_A 211 QMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQAR-P 289 (349)
T ss_dssp HHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC----
T ss_pred HHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccc-c
Confidence 444444 22 55678899877 999999852 4667777788876 49999999998753 3
Q ss_pred HHHhhhHhhhcCCeeeccc
Q psy8953 131 FEKFDSLYALAKGHCIYRG 149 (286)
Q Consensus 131 ~~~~d~v~~l~~G~i~~~g 149 (286)
..+++....+..|+++.++
T Consensus 290 ~~~~~~~~~~~~G~~l~~~ 308 (349)
T 1pzn_A 290 DAFFGDPTRPIGGHILAHS 308 (349)
T ss_dssp ------------CCCCCTT
T ss_pred ccccCCccccCCcceEeec
Confidence 2334445556666666443
No 178
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.16 E-value=1e-07 Score=83.69 Aligned_cols=39 Identities=28% Similarity=0.435 Sum_probs=34.4
Q ss_pred cccceeeeeEEeCC-------CEEEEEcCCCCcHHHHHHHHHcCCC
Q psy8953 242 KEILHGISGEFKAG-------QLTAIMGPSGAGKSTLLNILAGLTY 280 (286)
Q Consensus 242 ~~il~~~~l~i~~G-------e~~aivG~NGsGKSTLl~~l~GL~~ 280 (286)
..+++++++.+.+| ++++|+||||+|||||+++|+|.+.
T Consensus 31 ~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~ 76 (334)
T 1in4_A 31 ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQ 76 (334)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 45788888888876 8999999999999999999999873
No 179
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.16 E-value=1.1e-08 Score=85.57 Aligned_cols=134 Identities=11% Similarity=0.002 Sum_probs=76.3
Q ss_pred Cchhhhh-c--CC-CCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcC------CCCCCC
Q psy8953 1 MSIELNV-Q--SI-RLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLK------LGFKVS 70 (286)
Q Consensus 1 ~stll~~-~--g~-~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~------~~~~~~ 70 (286)
||||+++ + |. .+ -+|.+.+++..... ......+.+||++|+......+++.+...+..... ......
T Consensus 43 KSTLl~~i~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (251)
T 2ehv_A 43 KTTFAAQFIYKGAEEY--GEPGVFVTLEERAR-DLRREMASFGWDFEKYEKEGKIAIVDGVSSVVGLPSEEKFVLEDRFN 119 (251)
T ss_dssp HHHHHHHHHHHHHHHH--CCCEEEEESSSCHH-HHHHHHHTTTCCHHHHHHTTSEEEEC-------------------CC
T ss_pred HHHHHHHHHHHHHHhC--CCeEEEEEccCCHH-HHHHHHHHcCCChHHHhhcCCEEEEEccccccccccccceeccCccc
Confidence 8999999 8 54 33 24567777665432 22333467899999865555555554433322100 001112
Q ss_pred HHHHHHHHhhhhhhcccCCccc------cCCCcc-----hHHHHHHHHHHHHHHhCCCEEEEEEcCCCHHH--------H
Q psy8953 71 TQEKKDQVSLELWNNFCKKKKK------KKRGLD-----SSSCSQCVSLLANLAKQGRTVVATIHTPSALL--------F 131 (286)
Q Consensus 71 ~~~~~~~v~l~~~~~~~gG~kq------ptsgLD-----~~~~~~~~~~l~~l~~~g~tii~~~h~~~~~~--------~ 131 (286)
.+++.+++. ..++.++.+ ||++|| +..+..+..+++.+++.|+|||+++|..+... .
T Consensus 120 ~~~~~~~~~----~~l~~~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~~~~~~~~~~i~ 195 (251)
T 2ehv_A 120 VDNFLRYIY----RVVKAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIE 195 (251)
T ss_dssp HHHHHHHHH----HHHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCG
T ss_pred HHHHHHHHH----HHHHhhCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCCcccccccChh
Confidence 233322221 111122233 899987 67777799999999888999999999987531 4
Q ss_pred HHh-hhHhhhc
Q psy8953 132 EKF-DSLYALA 141 (286)
Q Consensus 132 ~~~-d~v~~l~ 141 (286)
.++ |++++|+
T Consensus 196 ~~~aD~vi~l~ 206 (251)
T 2ehv_A 196 EFIARGVIVLD 206 (251)
T ss_dssp GGGCSEEEEEE
T ss_pred hEeeeEEEEEe
Confidence 667 9999885
No 180
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.15 E-value=3.6e-07 Score=79.56 Aligned_cols=37 Identities=22% Similarity=0.155 Sum_probs=33.0
Q ss_pred ceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCC
Q psy8953 245 LHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYL 281 (286)
Q Consensus 245 l~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~ 281 (286)
++++++++.+|++++|+|+||+||||++..|++++..
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~ 131 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAE 131 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHH
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4678888999999999999999999999999998754
No 181
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.11 E-value=6.9e-07 Score=84.51 Aligned_cols=24 Identities=33% Similarity=0.642 Sum_probs=21.7
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCCC
Q psy8953 258 TAIMGPSGAGKSTLLNILAGLTYL 281 (286)
Q Consensus 258 ~aivG~NGsGKSTLl~~l~GL~~~ 281 (286)
+||+|+||||||||+++|+|+..|
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~~P 71 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVALP 71 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC--
T ss_pred EEEECCCCChHHHHHHHHhCCCCC
Confidence 899999999999999999999876
No 182
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.10 E-value=5.6e-07 Score=77.85 Aligned_cols=34 Identities=21% Similarity=0.187 Sum_probs=29.7
Q ss_pred eeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 249 SGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 249 ~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
+++..+|++++|+|+|||||||+++.|+++++.+
T Consensus 98 ~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~ 131 (306)
T 1vma_A 98 NVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDE 131 (306)
T ss_dssp CCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred cccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhc
Confidence 4456789999999999999999999999987653
No 183
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=98.09 E-value=5.4e-07 Score=79.19 Aligned_cols=47 Identities=15% Similarity=0.204 Sum_probs=42.5
Q ss_pred cCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHhhhHhhhc
Q psy8953 93 KKRGLDSSSCSQCVSLLANLAKQGRTVVATIHTPSALLFEKFDSLYALA 141 (286)
Q Consensus 93 ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~~~~~~~~~~d~v~~l~ 141 (286)
||++||+..+..+++.|+++...|.|||+++|+++ +...+|++++|.
T Consensus 281 p~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~--~~~~~d~~~~l~ 327 (339)
T 3qkt_A 281 PTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE--LKDAADHVIRIS 327 (339)
T ss_dssp CCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGG--GGGGCSEEEEEE
T ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHH--HHHhCCEEEEEE
Confidence 99999999999999999999877899999999954 568899999885
No 184
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.08 E-value=5.8e-07 Score=83.75 Aligned_cols=31 Identities=39% Similarity=0.351 Sum_probs=28.5
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHHcCCCC
Q psy8953 251 EFKAGQLTAIMGPSGAGKSTLLNILAGLTYL 281 (286)
Q Consensus 251 ~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~ 281 (286)
.+++|++++|+|+||||||||+++|+|++.+
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~ 395 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLME 395 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcc
Confidence 5789999999999999999999999998763
No 185
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.06 E-value=1.4e-06 Score=75.33 Aligned_cols=116 Identities=9% Similarity=0.028 Sum_probs=70.7
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCch----hhhcc--cceeeEEecCcc-cCCCCCHHHHHHHHHhcCCC------
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSA----CIEQF--LKLSCYIQQDDA-LRPKLTVTEAMMIASHLKLG------ 66 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~----~~~~~--~~~~g~v~Q~~~-~~~~~tV~e~l~f~~~~~~~------ 66 (286)
||||++. +|+... .+|+|.++|.++... +...+ +..++||+|++. +++.+||+|++.++...+..
T Consensus 113 KTTll~~Lag~l~~-~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~v~e~l~~~~~~~~d~~lldt 191 (302)
T 3b9q_A 113 KTTSLGKLAHRLKN-EGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKRGKEEGYDVVLCDT 191 (302)
T ss_dssp HHHHHHHHHHHHHH-TTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHHHHHHHHHHHHHTTCSEEEECC
T ss_pred HHHHHHHHHHHHHH-cCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHHHHHHHHHHHHHcCCcchHHhc
Confidence 7999999 996432 479999999987542 12233 346999999998 89999999999987542111
Q ss_pred --C-CCCHHHHH----HHHhhhhhhcccCCccc------cCCCcchHHHHHHHHHHHHHHh-CCCEEEEEEcC
Q psy8953 67 --F-KVSTQEKK----DQVSLELWNNFCKKKKK------KKRGLDSSSCSQCVSLLANLAK-QGRTVVATIHT 125 (286)
Q Consensus 67 --~-~~~~~~~~----~~v~l~~~~~~~gG~kq------ptsgLD~~~~~~~~~~l~~l~~-~g~tii~~~h~ 125 (286)
+ ......+. .|+.+. -.+...-+. ||+|||+..+ ++.+++ .|.|+|+++|-
T Consensus 192 ~gl~~~~~~~~~eLSkqr~~ia--ral~~~P~e~lLvLDptsglD~~~~------~~~~~~~~g~t~iiiThl 256 (302)
T 3b9q_A 192 SGRLHTNYSLMEELIACKKAVG--KIVSGAPNEILLVLDGNTGLNMLPQ------AREFNEVVGITGLILTKL 256 (302)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHH--TTSTTCCSEEEEEEEGGGGGGGHHH------HHHHHHHTCCCEEEEECC
T ss_pred CCCCcchhHHHHHHHHHHHHHH--HhhccCCCeeEEEEeCCCCcCHHHH------HHHHHHhcCCCEEEEeCC
Confidence 0 00111111 111110 001111111 8999998754 356665 49999999994
No 186
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=98.06 E-value=1.4e-06 Score=80.91 Aligned_cols=48 Identities=19% Similarity=0.306 Sum_probs=42.9
Q ss_pred cCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHhhhHhhhcCC
Q psy8953 93 KKRGLDSSSCSQCVSLLANLAKQGRTVVATIHTPSALLFEKFDSLYALAKG 143 (286)
Q Consensus 93 ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~~~~~~~~~~d~v~~l~~G 143 (286)
||+|||+.++..+.++|+++++ |.|||+++|++. +...+|++++|.++
T Consensus 426 p~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~~--~~~~~d~~~~~~~~ 473 (517)
T 4ad8_A 426 VDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLAQ--IAARAHHHYKVEKQ 473 (517)
T ss_dssp CSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCHH--HHHHSSEEEEEECC
T ss_pred CcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH--HHHhCCEEEEEecc
Confidence 8999999999999999999988 899999999975 34679999999554
No 187
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.05 E-value=2.8e-07 Score=79.62 Aligned_cols=117 Identities=11% Similarity=0.057 Sum_probs=58.3
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
||||+|. +|......+| |.++|.++... .. .+.++|++|++...+.+||+|++.|+....-... ...+.+.+.
T Consensus 31 KSTLl~~L~g~~~~~~~g-i~~~g~~~~~t--~~-~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~--~~~l~~~l~ 104 (301)
T 2qnr_A 31 KSTLINSLFLTDLYPERV-ISGAAEKIERT--VQ-IEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC--FKTIISYID 104 (301)
T ss_dssp HHHHHHHHHC----------------------------CEEEEC---CCEEEEEEEEC-------------CTTHHHHHH
T ss_pred HHHHHHHHhCCCccCCCC-cccCCcccCCc--ce-EeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH--HHHHHHHHH
Confidence 7999999 9863333567 88888876542 12 3668999999888899999999999764310000 001111122
Q ss_pred --hh-hhhcccCCccc---------------cCC-CcchHHHHHHHHHHHHHHhC-CCEEEEEEcCCC
Q psy8953 80 --LE-LWNNFCKKKKK---------------KKR-GLDSSSCSQCVSLLANLAKQ-GRTVVATIHTPS 127 (286)
Q Consensus 80 --l~-~~~~~~gG~kq---------------pts-gLD~~~~~~~~~~l~~l~~~-g~tii~~~h~~~ 127 (286)
.. ....++||+|| ||+ +||+... .+++++... ++++|++.|+..
T Consensus 105 ~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 105 EQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp HHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred HHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 12 45667899988 887 4999873 566777664 778888889864
No 188
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=98.03 E-value=5.6e-07 Score=79.50 Aligned_cols=54 Identities=11% Similarity=0.020 Sum_probs=47.8
Q ss_pred cCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHhhhHhhhcCCeeecccChhcH
Q psy8953 93 KKRGLDSSSCSQCVSLLANLAKQGRTVVATIHTPSALLFEKFDSLYALAKGHCIYRGSISRL 154 (286)
Q Consensus 93 ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 154 (286)
||++||+..+..+++.|+++. .|+|+++| .+. .+|++++|++|+++..|+++++
T Consensus 301 p~s~LD~~~~~~l~~~l~~~~---qt~i~~th-~~~----~~~~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 301 FTAELDPHRRQYLLDLAASVP---QAIVTGTE-LAP----GAALTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp GGGCCCHHHHHHHHHHHHHSS---EEEEEESS-CCT----TCSEEEEEETTEEEECCCTTTS
T ss_pred ccccCCHHHHHHHHHHHHhcC---cEEEEEEe-ccc----cCCEEEEEECCEEEecCCHHHH
Confidence 999999999999999998874 68999999 443 6899999999999999988765
No 189
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.98 E-value=9.8e-08 Score=78.70 Aligned_cols=130 Identities=15% Similarity=0.134 Sum_probs=74.5
Q ss_pred Cchhhhh-cCC-CCC-----CceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHH
Q psy8953 1 MSIELNV-QSI-RLT-----GSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQE 73 (286)
Q Consensus 1 ~stll~~-~g~-~~~-----~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~ 73 (286)
||||++. +|. .+. .-.|.|++++..... .+.+++++|+..+++. ||.|++.|.... ...+
T Consensus 38 KSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~------~~~i~~~~~~~~~~~~-~~~~~~~~~~~~------~~~~ 104 (231)
T 4a74_A 38 KTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR------PERIREIAQNRGLDPD-EVLKHIYVARAF------NSNH 104 (231)
T ss_dssp HHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC------HHHHHHHHHHTTSCHH-HHHHTEEEEECC------SHHH
T ss_pred HHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC------HHHHHHHHHHcCCCHH-HHhhcEEEEecC------ChHH
Confidence 8999999 883 331 245689998865321 2356778887665554 787877664321 2222
Q ss_pred HHHHHh--hhhhhcccC--Cccc------cCCCcchH-------H-----HHHHHHHHHHHHhC-CCEEEEEEcCCCH--
Q psy8953 74 KKDQVS--LELWNNFCK--KKKK------KKRGLDSS-------S-----CSQCVSLLANLAKQ-GRTVVATIHTPSA-- 128 (286)
Q Consensus 74 ~~~~v~--l~~~~~~~g--G~kq------ptsgLD~~-------~-----~~~~~~~l~~l~~~-g~tii~~~h~~~~-- 128 (286)
..+.+. ......... .+-+ |++.||+. + ..+++..|.+++++ |+|||+++|....
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g 184 (231)
T 4a74_A 105 QMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGG 184 (231)
T ss_dssp HHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC----
T ss_pred HHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcc
Confidence 222121 111110000 1111 88888873 2 23788888888765 9999999995442
Q ss_pred -HHHHHhhhHhhhcCC
Q psy8953 129 -LLFEKFDSLYALAKG 143 (286)
Q Consensus 129 -~~~~~~d~v~~l~~G 143 (286)
.+...+|++++|++|
T Consensus 185 ~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 185 HILAHSATLRVYLRKG 200 (231)
T ss_dssp -----CCSEEEEEEEC
T ss_pred hhhHhhceEEEEEEec
Confidence 355668888887764
No 190
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=97.96 E-value=1.5e-06 Score=80.76 Aligned_cols=36 Identities=31% Similarity=0.447 Sum_probs=32.5
Q ss_pred cceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCC
Q psy8953 244 ILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTY 280 (286)
Q Consensus 244 il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~ 280 (286)
.++++++++.+| +.+|+|+||||||||+.+|.+++.
T Consensus 50 ~~~~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~llg 85 (517)
T 4ad8_A 50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLG 85 (517)
T ss_dssp TBSCEEEECCCS-EEEEEESHHHHHHHHTHHHHHHTC
T ss_pred ceeeEEEecCCC-eEEEEcCCCCCHHHHHHHHHHHhc
Confidence 578889999999 999999999999999999987753
No 191
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=97.93 E-value=4.9e-06 Score=66.63 Aligned_cols=25 Identities=32% Similarity=0.503 Sum_probs=23.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCC
Q psy8953 257 LTAIMGPSGAGKSTLLNILAGLTYL 281 (286)
Q Consensus 257 ~~aivG~NGsGKSTLl~~l~GL~~~ 281 (286)
.++|+|+||||||||++.++|....
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~ 55 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFN 55 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCC
Confidence 6799999999999999999998764
No 192
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.93 E-value=2.5e-06 Score=73.49 Aligned_cols=29 Identities=34% Similarity=0.570 Sum_probs=26.5
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHHcCCCC
Q psy8953 253 KAGQLTAIMGPSGAGKSTLLNILAGLTYL 281 (286)
Q Consensus 253 ~~Ge~~aivG~NGsGKSTLl~~l~GL~~~ 281 (286)
.+|++++|+|+|||||||++..|++.+++
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~ 131 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISML 131 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 47999999999999999999999998764
No 193
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=97.91 E-value=3e-06 Score=67.03 Aligned_cols=46 Identities=11% Similarity=0.256 Sum_probs=38.9
Q ss_pred cCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHhhhHhhhc
Q psy8953 93 KKRGLDSSSCSQCVSLLANLAKQGRTVVATIHTPSALLFEKFDSLYALA 141 (286)
Q Consensus 93 ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~~~~~~~~~~d~v~~l~ 141 (286)
||++||+.++..+.++|+++... .++|+++|+. .....+|+++.+.
T Consensus 95 p~a~LD~~~~~~~~~~l~~~~~~-~~~ivith~~--~~~~~ad~i~~v~ 140 (173)
T 3kta_B 95 IDAHLDDANVKRVADLIKESSKE-SQFIVITLRD--VMMANADKIIGVS 140 (173)
T ss_dssp TTTTCCHHHHHHHHHHHHHHTTT-SEEEEECSCH--HHHTTCSEEEEEE
T ss_pred CccCCCHHHHHHHHHHHHHhccC-CEEEEEEecH--HHHHhCCEEEEEE
Confidence 99999999999999999998764 5888999995 3557899998653
No 194
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=97.91 E-value=1.7e-06 Score=81.85 Aligned_cols=41 Identities=22% Similarity=0.260 Sum_probs=37.8
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
..+++++++.+.+|+.++|+||||+|||||+++|+|+++..
T Consensus 47 ~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~ 87 (604)
T 3k1j_A 47 EHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTE 87 (604)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCS
T ss_pred hhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcc
Confidence 45889999999999999999999999999999999998754
No 195
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.85 E-value=3.1e-06 Score=74.41 Aligned_cols=39 Identities=28% Similarity=0.344 Sum_probs=34.6
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTY 280 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~ 280 (286)
..+++++++.+.+|.+++|+|+||+|||||++.|+|.++
T Consensus 43 ~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~ 81 (341)
T 2p67_A 43 TQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLI 81 (341)
T ss_dssp HHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred HHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 347788888999999999999999999999999998653
No 196
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.84 E-value=1e-05 Score=72.47 Aligned_cols=31 Identities=29% Similarity=0.398 Sum_probs=26.4
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHH--HcCCCC
Q psy8953 251 EFKAGQLTAIMGPSGAGKSTLLNIL--AGLTYL 281 (286)
Q Consensus 251 ~i~~Ge~~aivG~NGsGKSTLl~~l--~GL~~~ 281 (286)
-|++|++++|+|+||||||||++.| +++.++
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~ 206 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPL 206 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCG
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCc
Confidence 6899999999999999999999955 455543
No 197
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.84 E-value=2.6e-08 Score=82.12 Aligned_cols=135 Identities=7% Similarity=-0.043 Sum_probs=81.5
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhh-hcccceeeEEecCcccCCCCCHHHHHHHHHhcCCC-CCCCHHHHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACI-EQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLG-FKVSTQEKKDQ 77 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~-~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~-~~~~~~~~~~~ 77 (286)
||||+++ +|+.+ |+|.+ |.+...... ....+.++|++|++.+|+.++..++..+......+ .+.+.+++++.
T Consensus 36 KSTLl~~L~g~~p----G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~i~~~ 110 (218)
T 1z6g_A 36 KGTLIKKLLNEFP----NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKNEDFLEYDNYANNFYGTLKSEYDKA 110 (218)
T ss_dssp HHHHHHHHHHHST----TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEEEHHHHHHH
T ss_pred HHHHHHHHHhhCC----CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhccchhhhhhcccccCCCcHHHHHHH
Confidence 8999999 99664 88999 876543110 12346899999998766544311111111111110 12234455554
Q ss_pred Hh-hh---hhhcccCCccc------------------------cCCCcchHHHHHHHHHHHHHHh-------CCCEEEEE
Q psy8953 78 VS-LE---LWNNFCKKKKK------------------------KKRGLDSSSCSQCVSLLANLAK-------QGRTVVAT 122 (286)
Q Consensus 78 v~-l~---~~~~~~gG~kq------------------------ptsgLD~~~~~~~~~~l~~l~~-------~g~tii~~ 122 (286)
++ .. ....++|||+| |++++|..+...+.+.|..+.. ...+.|++
T Consensus 111 l~~~~~~il~~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv 190 (218)
T 1z6g_A 111 KEQNKICLFEMNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNIELHEANLLNFNLSII 190 (218)
T ss_dssp HHTTCEEEEEECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEE
T ss_pred HhCCCcEEEEecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcccCCCEEEE
Confidence 44 11 22345677775 6678888888888888877643 35677888
Q ss_pred EcCCCHHHHHHhhhHhhhc
Q psy8953 123 IHTPSALLFEKFDSLYALA 141 (286)
Q Consensus 123 ~h~~~~~~~~~~d~v~~l~ 141 (286)
.|+++ +.+..+++++.-.
T Consensus 191 ~~~~~-ea~~~~~~ii~~~ 208 (218)
T 1z6g_A 191 NDDLT-LTYQQLKNYLLNS 208 (218)
T ss_dssp CSSHH-HHHHHHHHHHHHH
T ss_pred CCCHH-HHHHHHHHHHHHH
Confidence 88875 4567788877643
No 198
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.83 E-value=2.8e-06 Score=79.27 Aligned_cols=39 Identities=23% Similarity=0.469 Sum_probs=33.6
Q ss_pred cceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCC
Q psy8953 244 ILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLNF 283 (286)
Q Consensus 244 il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~~ 283 (286)
+++++++++ +|++++|+||||+|||||+++|++++...|
T Consensus 98 ~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~ 136 (543)
T 3m6a_A 98 AVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKF 136 (543)
T ss_dssp HHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEE
T ss_pred HHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCe
Confidence 566677777 899999999999999999999999886554
No 199
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.78 E-value=7.7e-06 Score=70.15 Aligned_cols=28 Identities=21% Similarity=0.176 Sum_probs=25.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCCCC
Q psy8953 254 AGQLTAIMGPSGAGKSTLLNILAGLTYL 281 (286)
Q Consensus 254 ~Ge~~aivG~NGsGKSTLl~~l~GL~~~ 281 (286)
++.+++|+|++|||||||++.|++++..
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 5789999999999999999999988754
No 200
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=97.78 E-value=2e-05 Score=69.77 Aligned_cols=119 Identities=8% Similarity=-0.020 Sum_probs=75.7
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEe-cCccc--CCCCCHHHHHHHHHhcCCCCCCCHHHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQ-QDDAL--RPKLTVTEAMMIASHLKLGFKVSTQEKKD 76 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~-Q~~~~--~~~~tV~e~l~f~~~~~~~~~~~~~~~~~ 76 (286)
||||+++ +|+.+. .+|.|.++|..--. ....++.++||+ |++.+ ++..|++++|+++++.+-.
T Consensus 188 KSTll~~l~~~~~~-~~g~I~ie~~~e~~--~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~pd---------- 254 (361)
T 2gza_A 188 KTTLMKALMQEIPF-DQRLITIEDVPELF--LPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMKPT---------- 254 (361)
T ss_dssp HHHHHHHHHTTSCT-TSCEEEEESSSCCC--CTTCSSEEEEECC----------CCHHHHHHHHTTSCCS----------
T ss_pred HHHHHHHHHhcCCC-CceEEEECCccccC--ccccCCEEEEeecCccccccccccCHHHHHHHHHhcCCC----------
Confidence 8999999 997655 68999999853211 233567899999 88754 5889999999998863110
Q ss_pred HHhhhhhhcccCCccccCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHhhhHhhhcCCeeecccCh
Q psy8953 77 QVSLELWNNFCKKKKKKKRGLDSSSCSQCVSLLANLAKQGRTVVATIHTPSALLFEKFDSLYALAKGHCIYRGSI 151 (286)
Q Consensus 77 ~v~l~~~~~~~gG~kqptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~ 151 (286)
...=|+ ++. .++.+.|+.+...+.|++.+.|..+ ....+||++.|..+.....+-+
T Consensus 255 --------~~l~~e--~r~-------~~~~~~l~~l~~g~~~~l~t~H~~~--~~~~~~Rl~~l~~~~~~~~~~~ 310 (361)
T 2gza_A 255 --------RILLAE--LRG-------GEAYDFINVAASGHGGSITSCHAGS--CELTFERLALMVLQNRQGRQLP 310 (361)
T ss_dssp --------EEEESC--CCS-------THHHHHHHHHHTTCCSCEEEEECSS--HHHHHHHHHHHHTTSTTGGGSC
T ss_pred --------EEEEcC--chH-------HHHHHHHHHHhcCCCeEEEEECCCC--HHHHHHHHHHHHhccccccCCC
Confidence 000011 111 3456677777665668899999976 4577999999988754433333
No 201
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.77 E-value=7.5e-06 Score=72.22 Aligned_cols=115 Identities=10% Similarity=0.019 Sum_probs=72.5
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCch----hhhcc--cceeeEEecCcc-cCCCCCHHHHHHHHHhcCCC------
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSA----CIEQF--LKLSCYIQQDDA-LRPKLTVTEAMMIASHLKLG------ 66 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~----~~~~~--~~~~g~v~Q~~~-~~~~~tV~e~l~f~~~~~~~------ 66 (286)
||||+.. +|+... .+|+|.++|.++... +...+ +..++||+|++. +++.+||+|++.++...+..
T Consensus 170 KTTll~~Lag~l~~-~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~tv~e~l~~~~~~~~d~~lldt 248 (359)
T 2og2_A 170 KTTSLGKLAHRLKN-EGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKRGKEEGYDVVLCDT 248 (359)
T ss_dssp HHHHHHHHHHHHHH-TTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred HHHHHHHHHhhccc-cCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhhHHHHHHHHHhCCCHHHHHHh
Confidence 7999999 996432 479999999987542 12233 356999999998 89999999999997642111
Q ss_pred --C-CCCHHHHH----HHHhhh-----hhh--cccCCccccCCCcchHHHHHHHHHHHHHHh-CCCEEEEEEcC
Q psy8953 67 --F-KVSTQEKK----DQVSLE-----LWN--NFCKKKKKKKRGLDSSSCSQCVSLLANLAK-QGRTVVATIHT 125 (286)
Q Consensus 67 --~-~~~~~~~~----~~v~l~-----~~~--~~~gG~kqptsgLD~~~~~~~~~~l~~l~~-~g~tii~~~h~ 125 (286)
+ ......+. .|+.+. .++ -++-- ||+|||+..+ ++.+++ .|.|+|+++|-
T Consensus 249 ~Gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLD---pttglD~~~~------~~~~~~~~g~t~iiiThl 313 (359)
T 2og2_A 249 SGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLD---GNTGLNMLPQ------AREFNEVVGITGLILTKL 313 (359)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHHHHSTTCCSEEEEEEE---GGGGGGGHHH------HHHHHHHTCCCEEEEESC
T ss_pred cCCChhhhhHHHHHHHHHHHHHHHHhcCCCceEEEEc---CCCCCCHHHH------HHHHHHhcCCeEEEEecC
Confidence 0 00111110 111110 011 11111 8999998755 356665 49999999994
No 202
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.70 E-value=8e-06 Score=75.17 Aligned_cols=36 Identities=28% Similarity=0.556 Sum_probs=31.8
Q ss_pred ccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCC
Q psy8953 243 EILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTY 280 (286)
Q Consensus 243 ~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~ 280 (286)
.+++++++.+++| +.|+||||+|||||+++|+|...
T Consensus 54 ~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~ 89 (499)
T 2dhr_A 54 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR 89 (499)
T ss_dssp GGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT
T ss_pred hhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC
Confidence 3577788888888 89999999999999999999765
No 203
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.61 E-value=8.5e-06 Score=70.36 Aligned_cols=121 Identities=9% Similarity=-0.002 Sum_probs=79.6
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCch----hhhcc--cceeeEEecCcccCCCCCHHHHHHHHHhcCCC-------
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSA----CIEQF--LKLSCYIQQDDALRPKLTVTEAMMIASHLKLG------- 66 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~----~~~~~--~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~------- 66 (286)
||||++. +|+... .+|+|.++|.++... +...+ +..++||+|++.++|..||.|++.++...+..
T Consensus 115 KTTll~~Lagll~~-~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~~~~~~d~~llDt~ 193 (304)
T 1rj9_A 115 KTTTIAKLGRYYQN-LGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAMKARGYDLLFVDTA 193 (304)
T ss_dssp HHHHHHHHHHHHHT-TTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHHHHHTCSEEEECCC
T ss_pred HHHHHHHHHHHHHh-cCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEecCC
Confidence 7999999 996433 479999999987532 12223 34689999999999999999999987532111
Q ss_pred -C-CCCHHHHH----HHHhhhhhhcccCCccccC---CCcchHHHHHHHHHHHHHHhC-CCEEEEEEcCCC
Q psy8953 67 -F-KVSTQEKK----DQVSLELWNNFCKKKKKKK---RGLDSSSCSQCVSLLANLAKQ-GRTVVATIHTPS 127 (286)
Q Consensus 67 -~-~~~~~~~~----~~v~l~~~~~~~gG~kqpt---sgLD~~~~~~~~~~l~~l~~~-g~tii~~~h~~~ 127 (286)
+ ......+. .|+.+. -.+.. +|. -.||+.+..++++.++.+++. |.|+|+++|...
T Consensus 194 G~~~~~~~~~~eLs~~r~~ia--Ral~~---~P~~~lLvLDa~t~~~~~~~~~~~~~~~~~t~iivTh~d~ 259 (304)
T 1rj9_A 194 GRLHTKHNLMEELKKVKRAIA--KADPE---EPKEVWLVLDAVTGQNGLEQAKKFHEAVGLTGVIVTKLDG 259 (304)
T ss_dssp CCCTTCHHHHHHHHHHHHHHH--HHCTT---CCSEEEEEEETTBCTHHHHHHHHHHHHHCCSEEEEECTTS
T ss_pred CCCCchHHHHHHHHHHHHHHH--HhhcC---CCCeEEEEEcHHHHHHHHHHHHHHHHHcCCcEEEEECCcc
Confidence 0 00111111 011000 00000 032 489999999999999999876 999999999843
No 204
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.58 E-value=1.8e-05 Score=71.27 Aligned_cols=34 Identities=24% Similarity=0.062 Sum_probs=29.7
Q ss_pred eeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCC
Q psy8953 246 HGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYL 281 (286)
Q Consensus 246 ~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~ 281 (286)
++++++ ++++++|+|+|||||||++..|+++++.
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~ 124 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKG 124 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 456666 8999999999999999999999998764
No 205
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.57 E-value=3.4e-05 Score=67.89 Aligned_cols=27 Identities=30% Similarity=0.517 Sum_probs=24.2
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHHcCC
Q psy8953 253 KAGQLTAIMGPSGAGKSTLLNILAGLT 279 (286)
Q Consensus 253 ~~Ge~~aivG~NGsGKSTLl~~l~GL~ 279 (286)
+++.+++|+|++|||||||++.|+|.+
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 357799999999999999999999864
No 206
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.52 E-value=2.4e-05 Score=65.57 Aligned_cols=35 Identities=29% Similarity=0.634 Sum_probs=24.5
Q ss_pred ceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCC
Q psy8953 245 LHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYL 281 (286)
Q Consensus 245 l~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~ 281 (286)
++.+++.+.+| +.|+||+|+|||||++.|++.+..
T Consensus 37 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~ 71 (257)
T 1lv7_A 37 FQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKV 71 (257)
T ss_dssp C-----CCCCE--EEEECCTTSCHHHHHHHHHHHHTC
T ss_pred HHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCC
Confidence 33344445444 899999999999999999987653
No 207
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.52 E-value=4.6e-05 Score=67.08 Aligned_cols=29 Identities=24% Similarity=0.408 Sum_probs=26.4
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHHcCC
Q psy8953 251 EFKAGQLTAIMGPSGAGKSTLLNILAGLT 279 (286)
Q Consensus 251 ~i~~Ge~~aivG~NGsGKSTLl~~l~GL~ 279 (286)
-+.+|+++.|.||||||||||+..+++..
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~ 85 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEA 85 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999999999998754
No 208
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.51 E-value=5.5e-05 Score=66.82 Aligned_cols=33 Identities=24% Similarity=0.407 Sum_probs=26.6
Q ss_pred ccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcC
Q psy8953 243 EILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278 (286)
Q Consensus 243 ~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL 278 (286)
.+|++++++++ .++|+|++|||||||++.|+|.
T Consensus 25 ~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 25 SALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp CCC----CCCC---EEEEECBTTSSHHHHHHHHHTS
T ss_pred cccccccccCC---EEEEECCCCCcHHHHHHHHhCC
Confidence 47888999997 8999999999999999999993
No 209
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.50 E-value=3.1e-05 Score=75.54 Aligned_cols=35 Identities=26% Similarity=0.302 Sum_probs=30.7
Q ss_pred eeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCC
Q psy8953 249 SGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLNF 283 (286)
Q Consensus 249 ~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~~ 283 (286)
++.+.+|+.+.|+||||+|||||+++|+|.+...|
T Consensus 232 ~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~ 266 (806)
T 1ypw_A 232 AIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF 266 (806)
T ss_dssp SSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEE
T ss_pred hcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcE
Confidence 34688999999999999999999999999876543
No 210
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.48 E-value=1.8e-05 Score=68.04 Aligned_cols=32 Identities=22% Similarity=0.218 Sum_probs=28.0
Q ss_pred eeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCC
Q psy8953 248 ISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTY 280 (286)
Q Consensus 248 ~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~ 280 (286)
++++.+ |++++++|+||+||||++..|++.+.
T Consensus 92 i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~ 123 (297)
T 1j8m_F 92 VIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYK 123 (297)
T ss_dssp CSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHH
T ss_pred cccCCC-CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 566665 99999999999999999999998764
No 211
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.47 E-value=7.6e-05 Score=62.94 Aligned_cols=109 Identities=13% Similarity=0.099 Sum_probs=66.3
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
||||+++ +|+.+...+|+|.++|.++.. .+....+||+|...-+...+-+..|+-++..
T Consensus 38 KSTll~~l~g~~~~~~~G~I~~~g~~i~~----~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~---------------- 97 (261)
T 2eyu_A 38 KSTTIASMIDYINQTKSYHIITIEDPIEY----VFKHKKSIVNQREVGEDTKSFADALRAALRE---------------- 97 (261)
T ss_dssp HHHHHHHHHHHHHHHCCCEEEEEESSCCS----CCCCSSSEEEEEEBTTTBSCHHHHHHHHHHH----------------
T ss_pred HHHHHHHHHHhCCCCCCCEEEEcCCccee----ecCCcceeeeHHHhCCCHHHHHHHHHHHHhh----------------
Confidence 8999999 996543238999999988753 2334457788743211111223333333221
Q ss_pred hhhhhcccCCccccCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHhhhHhhhcC
Q psy8953 80 LELWNNFCKKKKKKKRGLDSSSCSQCVSLLANLAKQGRTVVATIHTPSALLFEKFDSLYALAK 142 (286)
Q Consensus 80 l~~~~~~~gG~kqptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~~~~~~~~~~d~v~~l~~ 142 (286)
.++.+.=+| || |+.+...++ +. +..|.+|++++|..+ ....+||+++|..
T Consensus 98 --~p~illlDE--p~---D~~~~~~~l---~~-~~~g~~vl~t~H~~~--~~~~~dri~~l~~ 147 (261)
T 2eyu_A 98 --DPDVIFVGE--MR---DLETVETAL---RA-AETGHLVFGTLHTNT--AIDTIHRIVDIFP 147 (261)
T ss_dssp --CCSEEEESC--CC---SHHHHHHHH---HH-HHTTCEEEEEECCSS--HHHHHHHHHHTSC
T ss_pred --CCCEEEeCC--CC---CHHHHHHHH---HH-HccCCEEEEEeCcch--HHHHHHHHhhhcC
Confidence 111111111 77 888866543 33 346999999999986 4578999999865
No 212
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.46 E-value=5.8e-05 Score=66.72 Aligned_cols=33 Identities=30% Similarity=0.420 Sum_probs=30.9
Q ss_pred eeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCC
Q psy8953 247 GISGEFKAGQLTAIMGPSGAGKSTLLNILAGLT 279 (286)
Q Consensus 247 ~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~ 279 (286)
|+.+.+.+|+.++|+|++|+|||||++.|++..
T Consensus 166 D~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 166 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp HHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred eeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 889999999999999999999999999998754
No 213
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.44 E-value=1.7e-05 Score=69.43 Aligned_cols=38 Identities=26% Similarity=0.465 Sum_probs=33.8
Q ss_pred cccceeeeeEEeCCCE--EEEEcCCCCcHHHHHHHHHcCC
Q psy8953 242 KEILHGISGEFKAGQL--TAIMGPSGAGKSTLLNILAGLT 279 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~--~aivG~NGsGKSTLl~~l~GL~ 279 (286)
..+++.++..+..|++ +.+.||+|+||||+++.+++.+
T Consensus 31 ~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 31 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 3477888888999998 9999999999999999999865
No 214
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.40 E-value=8.8e-05 Score=65.24 Aligned_cols=27 Identities=26% Similarity=0.465 Sum_probs=24.9
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHHc
Q psy8953 251 EFKAGQLTAIMGPSGAGKSTLLNILAG 277 (286)
Q Consensus 251 ~i~~Ge~~aivG~NGsGKSTLl~~l~G 277 (286)
-+++|+++.|.|+||||||||+..++.
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~ 83 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVA 83 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999999998874
No 215
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.39 E-value=1.4e-05 Score=69.24 Aligned_cols=116 Identities=7% Similarity=-0.057 Sum_probs=68.5
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
||||+++ +|.... . +|. +.++||+||+.+++. ||.|++.+....+.+.....+...+.++
T Consensus 103 KSTL~~~L~gll~~-~------~G~-----------~~v~~v~qd~~~~~~-t~~e~~~~~~~~g~~~~~d~~~~~~~L~ 163 (312)
T 3aez_A 103 KSTTARVLQALLAR-W------DHH-----------PRVDLVTTDGFLYPN-AELQRRNLMHRKGFPESYNRRALMRFVT 163 (312)
T ss_dssp HHHHHHHHHHHHHT-S------TTC-----------CCEEEEEGGGGBCCH-HHHHHTTCTTCTTSGGGBCHHHHHHHHH
T ss_pred HHHHHHHHHhhccc-c------CCC-----------CeEEEEecCccCCcc-cHHHHHHHHHhcCCChHHHHHHHHHHHH
Confidence 7888888 884322 1 121 458999999998888 9999987643222332233344444333
Q ss_pred -hh------hhhcccCCccc-------------------cCCCcchHHHHHHHHHHHHHHhC-CCEEEEEEcCCCHHHHH
Q psy8953 80 -LE------LWNNFCKKKKK-------------------KKRGLDSSSCSQCVSLLANLAKQ-GRTVVATIHTPSALLFE 132 (286)
Q Consensus 80 -l~------~~~~~~gG~kq-------------------ptsgLD~~~~~~~~~~l~~l~~~-g~tii~~~h~~~~~~~~ 132 (286)
+. ....+||||+| |+..+|+.. ..+.+. ..+ |.+.|..+.....
T Consensus 164 ~l~~~~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~--------~~l~~~~D~~-I~V~a~~~~~~~R 234 (312)
T 3aez_A 164 SVKSGSDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT--------LMVSDLFDFS-LYVDARIEDIEQW 234 (312)
T ss_dssp HHHTTCSCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS--------CCGGGGCSEE-EEEEECHHHHHHH
T ss_pred HhCCCcccCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch--------HHHHHhcCcE-EEEECCHHHHHHH
Confidence 21 23458899999 888887521 123332 334 5556655444444
Q ss_pred HhhhHhhhcCCe
Q psy8953 133 KFDSLYALAKGH 144 (286)
Q Consensus 133 ~~d~v~~l~~G~ 144 (286)
..+|.+.+.+++
T Consensus 235 ~i~R~~~~rd~~ 246 (312)
T 3aez_A 235 YVSRFLAMRTTA 246 (312)
T ss_dssp HHHHHHHHTTTG
T ss_pred HHHHHHHHHhcc
Confidence 477777766654
No 216
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.38 E-value=3.9e-05 Score=69.46 Aligned_cols=47 Identities=15% Similarity=0.199 Sum_probs=41.3
Q ss_pred cCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHhhhHhhhc
Q psy8953 93 KKRGLDSSSCSQCVSLLANLAKQGRTVVATIHTPSALLFEKFDSLYALA 141 (286)
Q Consensus 93 ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~~~~~~~~~~d~v~~l~ 141 (286)
|+++||+..+..++++|+++...+.++|+++|+. .....+|+++++.
T Consensus 364 p~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~--~~~~~~d~~~~~~ 410 (430)
T 1w1w_A 364 VDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVGVY 410 (430)
T ss_dssp TTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEEEEE
T ss_pred CcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCH--HHHHhCCEEEEEE
Confidence 9999999999999999999976688999999995 3457799998875
No 217
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.35 E-value=1.1e-05 Score=70.30 Aligned_cols=117 Identities=9% Similarity=-0.024 Sum_probs=78.7
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCch----hhhcccceee--EEecCcccCCCCCHHHHHHHHHhcCCC-------
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSA----CIEQFLKLSC--YIQQDDALRPKLTVTEAMMIASHLKLG------- 66 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~----~~~~~~~~~g--~v~Q~~~~~~~~tV~e~l~f~~~~~~~------- 66 (286)
||||++. +|+... .+|+|.++|.++... +...+.+.+| |++|+..++|.++|+|++.++.+.+..
T Consensus 142 KTTll~~Lag~l~~-~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~~~~~~~d~vliDta 220 (328)
T 3e70_C 142 KTTTIAKLANWLKN-HGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHAKARGIDVVLIDTA 220 (328)
T ss_dssp HHHHHHHHHHHHHH-TTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHHHHHHTCSEEEEEEC
T ss_pred HHHHHHHHHHHHHh-cCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHHHHhccchhhHHhhc
Confidence 7999999 995432 578999999987532 1223344444 999998899999999999998653211
Q ss_pred -C-CCCHHHHHHHHhhh---hhhcccCCccccCCCcchHHHHHHHHHHHHHHhC-CCEEEEEEcC
Q psy8953 67 -F-KVSTQEKKDQVSLE---LWNNFCKKKKKKKRGLDSSSCSQCVSLLANLAKQ-GRTVVATIHT 125 (286)
Q Consensus 67 -~-~~~~~~~~~~v~l~---~~~~~~gG~kqptsgLD~~~~~~~~~~l~~l~~~-g~tii~~~h~ 125 (286)
+ .....-+.+.-.+. .++. |+..||+.+..++++.++.+.+. +.|+|+++|-
T Consensus 221 G~~~~~~~l~~eL~~i~ral~~de-------~llvLDa~t~~~~~~~~~~~~~~~~it~iilTKl 278 (328)
T 3e70_C 221 GRSETNRNLMDEMKKIARVTKPNL-------VIFVGDALAGNAIVEQARQFNEAVKIDGIILTKL 278 (328)
T ss_dssp CSCCTTTCHHHHHHHHHHHHCCSE-------EEEEEEGGGTTHHHHHHHHHHHHSCCCEEEEECG
T ss_pred cchhHHHHHHHHHHHHHHHhcCCC-------CEEEEecHHHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 0 00000011100000 1222 77789999999999999999864 9999999995
No 218
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.34 E-value=7e-05 Score=65.62 Aligned_cols=27 Identities=26% Similarity=0.282 Sum_probs=23.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHHc-CCCCC
Q psy8953 256 QLTAIMGPSGAGKSTLLNILAG-LTYLN 282 (286)
Q Consensus 256 e~~aivG~NGsGKSTLl~~l~G-L~~~~ 282 (286)
.++.|+||||+|||||++.|+| ++.++
T Consensus 37 ~~~ll~Gp~G~GKTtl~~~la~~l~~~~ 64 (354)
T 1sxj_E 37 PHLLLYGPNGTGKKTRCMALLESIFGPG 64 (354)
T ss_dssp CCEEEECSTTSSHHHHHHTHHHHHSCTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 3489999999999999999999 66543
No 219
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.33 E-value=4.9e-05 Score=63.72 Aligned_cols=30 Identities=30% Similarity=0.221 Sum_probs=25.6
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHHcCCC
Q psy8953 251 EFKAGQLTAIMGPSGAGKSTLLNILAGLTY 280 (286)
Q Consensus 251 ~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~ 280 (286)
...++.++.|+|++||||||+++.|+..+.
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 345678999999999999999999987553
No 220
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.33 E-value=0.0001 Score=64.90 Aligned_cols=110 Identities=20% Similarity=0.162 Sum_probs=72.1
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
|||||++ +|+.+...+|.|...+.++. .......+++.|.+......+..+.|+-++..
T Consensus 136 KTTlL~~l~g~~~~~~~~~i~t~ed~~e----~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~---------------- 195 (356)
T 3jvv_A 136 KSTTLAAMLDYLNNTKYHHILTIEDPIE----FVHESKKCLVNQREVHRDTLGFSEALRSALRE---------------- 195 (356)
T ss_dssp HHHHHHHHHHHHHHHCCCEEEEEESSCC----SCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTS----------------
T ss_pred HHHHHHHHHhcccCCCCcEEEEccCcHH----hhhhccccceeeeeeccccCCHHHHHHHHhhh----------------
Confidence 8999999 98654333566665554443 22345678899987766668888866666542
Q ss_pred hhhhhcccCCccccCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHhhhHhhhcCC
Q psy8953 80 LELWNNFCKKKKKKKRGLDSSSCSQCVSLLANLAKQGRTVVATIHTPSALLFEKFDSLYALAKG 143 (286)
Q Consensus 80 l~~~~~~~gG~kqptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~~~~~~~~~~d~v~~l~~G 143 (286)
.++.+.=|| || |+.+ +..+.+++..|.|+++++|..+. + ..+||++.|..|
T Consensus 196 --~PdvillDE--p~---d~e~----~~~~~~~~~~G~~vl~t~H~~~~-~-~~~dRli~l~~~ 246 (356)
T 3jvv_A 196 --DPDIILVGE--MR---DLET----IRLALTAAETGHLVFGTLHTTSA-A-KTIDRVVDVFPA 246 (356)
T ss_dssp --CCSEEEESC--CC---SHHH----HHHHHHHHHTTCEEEEEESCSSH-H-HHHHHHHHTSCH
T ss_pred --CcCEEecCC--CC---CHHH----HHHHHHHHhcCCEEEEEEccChH-H-HHHHHHhhhcCc
Confidence 111111111 66 5444 44555566779999999999974 4 789999999654
No 221
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.30 E-value=5.3e-05 Score=65.26 Aligned_cols=59 Identities=8% Similarity=0.053 Sum_probs=34.6
Q ss_pred Cchhhhh-cCCCCCCceeEEEE---CCeecCchhhhcccceeeEEecCcc----------------cCCCCCHHHHHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILV---NGQERKSACIEQFLKLSCYIQQDDA----------------LRPKLTVTEAMMIA 60 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~---~g~~~~~~~~~~~~~~~g~v~Q~~~----------------~~~~~tV~e~l~f~ 60 (286)
||||+|+ +|+... .+|+|.+ +|+++.........+.+|||+|+|. +|+.+|| |+++|.
T Consensus 182 KSTll~~l~g~~~~-~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~~~~l~~~~~~-~n~~~~ 259 (301)
T 1u0l_A 182 KSSLLNAINPGLKL-RVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEELKHYFKEFGD-KQCFFS 259 (301)
T ss_dssp HHHHHHHHSTTCCC-C-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHHHGGGSTTSSS-CCCSST
T ss_pred HHHHHHHhcccccc-cccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHHHHHHHHhccc-ccCcCC
Confidence 7999999 996544 6899999 9988754211111135899999984 5789999 989886
Q ss_pred H
Q psy8953 61 S 61 (286)
Q Consensus 61 ~ 61 (286)
.
T Consensus 260 ~ 260 (301)
T 1u0l_A 260 D 260 (301)
T ss_dssp T
T ss_pred C
Confidence 4
No 222
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.25 E-value=6.8e-06 Score=66.77 Aligned_cols=89 Identities=10% Similarity=0.097 Sum_probs=59.2
Q ss_pred eeeEEecCcccC--CCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh---hh-----hhhcccCCcc----c----------
Q psy8953 37 LSCYIQQDDALR--PKLTVTEAMMIASHLKLGFKVSTQEKKDQVS---LE-----LWNNFCKKKK----K---------- 92 (286)
Q Consensus 37 ~~g~v~Q~~~~~--~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~---l~-----~~~~~~gG~k----q---------- 92 (286)
.++||+||+..+ ..+|+++.+.+... .+.....+...+.++ +. ....+++|++ |
T Consensus 33 ~i~~v~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~~~li~ 110 (211)
T 3asz_A 33 RVALLPMDHYYKDLGHLPLEERLRVNYD--HPDAFDLALYLEHAQALLRGLPVEMPVYDFRAYTRSPRRTPVRPAPVVIL 110 (211)
T ss_dssp GEEEEEGGGCBCCCTTSCHHHHHHSCTT--SGGGBCHHHHHHHHHHHHTTCCEEECCEETTTTEECSSCEEECCCSEEEE
T ss_pred CeEEEecCccccCcccccHHHhcCCCCC--ChhhhhHHHHHHHHHHHHcCCCcCCCcccCcccCCCCCeEEeCCCcEEEE
Confidence 489999999765 67899988766432 122234444444444 11 1233557754 2
Q ss_pred ---------cCCC-------cchHHHHHHHHHHHHHH-hCCCEEEEEEcCCC
Q psy8953 93 ---------KKRG-------LDSSSCSQCVSLLANLA-KQGRTVVATIHTPS 127 (286)
Q Consensus 93 ---------ptsg-------LD~~~~~~~~~~l~~l~-~~g~tii~~~h~~~ 127 (286)
|+++ ||+....++.+.+++.. +.|+|++.+.|+..
T Consensus 111 ~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~~ 162 (211)
T 3asz_A 111 EGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVAQYL 162 (211)
T ss_dssp ESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred eehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 7777 89999999999998864 46899888888743
No 223
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.19 E-value=9.8e-05 Score=67.31 Aligned_cols=36 Identities=17% Similarity=0.253 Sum_probs=31.7
Q ss_pred cceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCC
Q psy8953 244 ILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLT 279 (286)
Q Consensus 244 il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~ 279 (286)
.|+++..-+++|+++.|.|++|+|||||+..+++-.
T Consensus 192 ~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~ 227 (454)
T 2r6a_A 192 ELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNV 227 (454)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 577777779999999999999999999999988643
No 224
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.18 E-value=0.0001 Score=63.36 Aligned_cols=33 Identities=27% Similarity=0.435 Sum_probs=27.9
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCC
Q psy8953 251 EFKAGQLTAIMGPSGAGKSTLLNILAGLTYLNF 283 (286)
Q Consensus 251 ~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~~ 283 (286)
.+.++..+.|.||+|+|||||++.+++.+..+|
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~ 77 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANECQANF 77 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEE
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHhCCCE
Confidence 456788999999999999999999998765443
No 225
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=97.12 E-value=8.8e-05 Score=65.81 Aligned_cols=46 Identities=11% Similarity=0.124 Sum_probs=40.1
Q ss_pred cCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHhhhHhhhc
Q psy8953 93 KKRGLDSSSCSQCVSLLANLAKQGRTVVATIHTPSALLFEKFDSLYALA 141 (286)
Q Consensus 93 ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~~~~~~~~~~d~v~~l~ 141 (286)
||++||+..+..+.+.|+++.. +.+||+++|++. +...+|++++|+
T Consensus 314 p~~~LD~~~~~~l~~~l~~~~~-~~~vi~~th~~~--~~~~~d~~~~l~ 359 (371)
T 3auy_A 314 PTVYLDENRRAKLAEIFRKVKS-IPQMIIITHHRE--LEDVADVIINVK 359 (371)
T ss_dssp TTTTCCHHHHHHHHHHHHHCCS-CSEEEEEESCGG--GGGGCSEEEEEE
T ss_pred CCCcCCHHHHHHHHHHHHHhcc-CCeEEEEEChHH--HHhhCCEEEEEE
Confidence 9999999999999999999754 468999999975 457899999987
No 226
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.11 E-value=0.00025 Score=64.37 Aligned_cols=24 Identities=38% Similarity=0.473 Sum_probs=22.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q psy8953 257 LTAIMGPSGAGKSTLLNILAGLTY 280 (286)
Q Consensus 257 ~~aivG~NGsGKSTLl~~l~GL~~ 280 (286)
.++|+|+||+|||||++.|+|..+
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~ 205 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKER 205 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTT
T ss_pred eEEEECCCCCCHHHHHHHHhCCcc
Confidence 579999999999999999999865
No 227
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.10 E-value=2.1e-05 Score=61.15 Aligned_cols=54 Identities=9% Similarity=-0.058 Sum_probs=41.6
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHH-HHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMI-ASH 62 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f-~~~ 62 (286)
||||+++ +|.. ..+|+|.++|+++... .... .||+|++.++ .+||.|++.| +.+
T Consensus 46 KTTLlr~l~g~l--~~~G~V~~~g~~i~~~--~~~~---~~~~q~~~l~-~ltv~e~l~~~g~~ 101 (158)
T 1htw_A 46 KTTLTRGMLQGI--GHQGNVKSPTYTLVEE--YNIA---GKMIYHFDLY-RLADPEELEFMGIR 101 (158)
T ss_dssp HHHHHHHHHHHT--TCCSCCCCCTTTCEEE--EEET---TEEEEEEECT-TCSCTTHHHHSTHH
T ss_pred HHHHHHHHHHhC--CCCCeEEECCEeeeee--ccCC---Ccceeccccc-cCCcHHHHHHcChH
Confidence 8999999 9966 3789999999887431 1112 3899999888 9999999965 554
No 228
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.09 E-value=0.00018 Score=63.30 Aligned_cols=101 Identities=10% Similarity=0.013 Sum_probs=58.4
Q ss_pred Cchhhhh-cCCCCCCceeEEEEC-CeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVN-GQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQV 78 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~-g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v 78 (286)
||||+|+ +|......+|+|.++ |.... ....+.++||+|+..++.+++|+| |. + ..++.+++.+++
T Consensus 228 KSTLln~L~g~~~~~~~G~I~~~~G~g~~----tt~~~~i~~v~q~~~l~dtpgv~e---~~----l-~~l~~~e~~~~~ 295 (358)
T 2rcn_A 228 KSSLLNALLGLQNEILTNDVSNVSGLGQH----TTTAARLYHFPHGGDVIDSPGVRE---FG----L-WHLEPEQITQGF 295 (358)
T ss_dssp HHHHHHHHHCCSSCCCCC-----------------CCCEEEECTTSCEEEECHHHHT---CC----C-CCCCHHHHHHTS
T ss_pred HHHHHHHHhccccccccCCccccCCCCcc----ceEEEEEEEECCCCEecCcccHHH---hh----h-cCCCHHHHHHHH
Confidence 8999999 997652478999987 76553 234578999999998999999998 32 2 235677777665
Q ss_pred h--hh---------hh-hcccCCccc---cCCCcchHHHHHH-HHHHHHHHh
Q psy8953 79 S--LE---------LW-NNFCKKKKK---KKRGLDSSSCSQC-VSLLANLAK 114 (286)
Q Consensus 79 ~--l~---------~~-~~~~gG~kq---ptsgLD~~~~~~~-~~~l~~l~~ 114 (286)
. ++ |. ..+| |++| --.++.+..+.+- .++++++.+
T Consensus 296 ~e~l~~~gl~~f~~~~~~~lS-G~~~r~ala~gli~~~R~~~y~~l~~e~~~ 346 (358)
T 2rcn_A 296 VEFHDYLGHCKYRDCKHDADP-GCAIREAVENGAIAETRFENYHRILESMAQ 346 (358)
T ss_dssp GGGGGGTTCSSSTTCCSSSCT-TCHHHHHHHHTSSCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHcCCchhcCCCcccCC-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 5 11 22 3466 8887 2235555555544 455566543
No 229
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=97.07 E-value=0.00027 Score=62.53 Aligned_cols=24 Identities=42% Similarity=0.649 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q psy8953 257 LTAIMGPSGAGKSTLLNILAGLTY 280 (286)
Q Consensus 257 ~~aivG~NGsGKSTLl~~l~GL~~ 280 (286)
.++|+|+||||||||++.|+|...
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~ 204 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQ 204 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCCc
Confidence 389999999999999999999764
No 230
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=97.07 E-value=5.9e-05 Score=67.27 Aligned_cols=142 Identities=11% Similarity=0.038 Sum_probs=91.8
Q ss_pred Cchhhhh-cCCCC-----------CCceeEEEECCeecCc-hhhhccccee---eEEecCcccCCCCCHHHHH--HHHHh
Q psy8953 1 MSIELNV-QSIRL-----------TGSSGKILVNGQERKS-ACIEQFLKLS---CYIQQDDALRPKLTVTEAM--MIASH 62 (286)
Q Consensus 1 ~stll~~-~g~~~-----------~~~~G~i~~~g~~~~~-~~~~~~~~~~---g~v~Q~~~~~~~~tV~e~l--~f~~~ 62 (286)
||||+|. +|... ...+|.|.++|..... .......+.+ .++.+.+.++...+..|.+ .|-+.
T Consensus 33 KSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~~s~~e~L~~~fl~~ 112 (392)
T 1ni3_A 33 KSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGASTGVGLGNAFLSH 112 (392)
T ss_dssp HHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCCCSSSSSCHHHHHH
T ss_pred HHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccCCcHHHHHHHHHHHH
Confidence 7999999 87321 2478999999854422 1112223334 4777888888888887766 56555
Q ss_pred cCCCCCCCHHHHHHHHh-hhhh-hc---ccCCccc----------cCCCcchHHHHHHHHHHHHH-HhCCCEEEEEEcCC
Q psy8953 63 LKLGFKVSTQEKKDQVS-LELW-NN---FCKKKKK----------KKRGLDSSSCSQCVSLLANL-AKQGRTVVATIHTP 126 (286)
Q Consensus 63 ~~~~~~~~~~~~~~~v~-l~~~-~~---~~gG~kq----------ptsgLD~~~~~~~~~~l~~l-~~~g~tii~~~h~~ 126 (286)
++-.. ..+. +++. +. .+.|... |+.++|+......+..++.+ ...|.||+ .|..
T Consensus 113 ir~~d--------~il~Vvd~~~d~~i~~v~~~~dP~~di~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~ 182 (392)
T 1ni3_A 113 VRAVD--------AIYQVVRAFDDAEIIHVEGDVDPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAK 182 (392)
T ss_dssp HTTCS--------EEEEEEECCCTTCSSCCSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHH
T ss_pred HHHHH--------HHHHHHhccccceeeeeccccCcchhhhhchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccH
Confidence 43210 0000 0110 00 0122112 67889999999999999988 66788864 8887
Q ss_pred CHHHHHHhhhHh-hhcCC-eeecccChhc
Q psy8953 127 SALLFEKFDSLY-ALAKG-HCIYRGSISR 153 (286)
Q Consensus 127 ~~~~~~~~d~v~-~l~~G-~i~~~g~~~~ 153 (286)
. .+.+.||+++ +|++| ++++.|+..+
T Consensus 183 ~-~~~~l~~~i~~~L~~G~~~~~~~~~~~ 210 (392)
T 1ni3_A 183 K-EEQAIIEKVYQYLTETKQPIRKGDWSN 210 (392)
T ss_dssp H-HHHHHHHHHHHHHHTTCSCGGGSCCCH
T ss_pred H-HHHHHHHHHHHHhccCCceeecCCCCH
Confidence 5 4668899999 99999 9999887654
No 231
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.07 E-value=0.00027 Score=60.37 Aligned_cols=24 Identities=21% Similarity=0.322 Sum_probs=21.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHc
Q psy8953 254 AGQLTAIMGPSGAGKSTLLNILAG 277 (286)
Q Consensus 254 ~Ge~~aivG~NGsGKSTLl~~l~G 277 (286)
.+.++.|+|++||||||+++.|+.
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 466899999999999999999974
No 232
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.06 E-value=0.00029 Score=58.25 Aligned_cols=25 Identities=32% Similarity=0.456 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCC
Q psy8953 257 LTAIMGPSGAGKSTLLNILAGLTYL 281 (286)
Q Consensus 257 ~~aivG~NGsGKSTLl~~l~GL~~~ 281 (286)
.++|+|++|+|||||++.|+|-...
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~ 55 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVF 55 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCS
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcC
Confidence 4699999999999999999996653
No 233
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.06 E-value=0.00016 Score=63.82 Aligned_cols=32 Identities=38% Similarity=0.485 Sum_probs=27.3
Q ss_pred cccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCC
Q psy8953 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLT 279 (286)
Q Consensus 242 ~~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~ 279 (286)
+.+++++++.| +|+|+||+|||||++.|.|..
T Consensus 30 k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~ 61 (361)
T 2qag_A 30 KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTD 61 (361)
T ss_dssp HHHHHCCEECE------EECCCTTSCHHHHHHHHTTCC
T ss_pred eeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCC
Confidence 44677888877 999999999999999998764
No 234
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.00 E-value=0.00013 Score=66.82 Aligned_cols=36 Identities=28% Similarity=0.541 Sum_probs=28.5
Q ss_pred cceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCC
Q psy8953 244 ILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYL 281 (286)
Q Consensus 244 il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~ 281 (286)
.++++++.+.+| +.|+||+|+|||||++.+++-...
T Consensus 40 ~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~ 75 (476)
T 2ce7_A 40 KFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANV 75 (476)
T ss_dssp HHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTC
T ss_pred HHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCC
Confidence 345556666667 789999999999999999985543
No 235
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.99 E-value=0.0001 Score=63.45 Aligned_cols=56 Identities=5% Similarity=0.004 Sum_probs=35.6
Q ss_pred Cchhhhh-cCCCCCCceeEEEE---CCeecCchhhhccc-ceeeEEecCccc-----CCCCCHHHHH--HHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILV---NGQERKSACIEQFL-KLSCYIQQDDAL-----RPKLTVTEAM--MIA 60 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~---~g~~~~~~~~~~~~-~~~g~v~Q~~~~-----~~~~tV~e~l--~f~ 60 (286)
||||+|+ + ... ..+|+|.+ +|+++.... ..+. +.+|||+|+|.+ ++.+|| |++ .|.
T Consensus 178 KSTLln~l~-~~~-~~~G~i~~~~~~G~~~t~~~-~~~~~~~~g~v~d~pg~~~~~l~~~lt~-e~l~~~f~ 245 (302)
T 2yv5_A 178 KSSILSRLT-GEE-LRTQEVSEKTERGRHTTTGV-RLIPFGKGSFVGDTPGFSKVEATMFVKP-REVRNYFR 245 (302)
T ss_dssp HHHHHHHHH-SCC-CCCSCC---------CCCCE-EEEEETTTEEEESSCCCSSCCGGGTSCG-GGGGGGCG
T ss_pred HHHHHHHHH-Hhh-CcccccccccCCCCCceeeE-EEEEcCCCcEEEECcCcCcCcccccCCH-HHHHHHHH
Confidence 8999999 9 543 37899999 998876421 1122 358999999954 278999 888 665
No 236
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.99 E-value=0.00031 Score=64.69 Aligned_cols=31 Identities=16% Similarity=0.233 Sum_probs=27.9
Q ss_pred eeeeEEeCCCEEEEEcCCCCcHHHHHHHHHc
Q psy8953 247 GISGEFKAGQLTAIMGPSGAGKSTLLNILAG 277 (286)
Q Consensus 247 ~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~G 277 (286)
-+.+++.++.+++|+|.+||||||+++.|..
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMIL 189 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHH
Confidence 3678888999999999999999999999875
No 237
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.96 E-value=0.00028 Score=58.68 Aligned_cols=104 Identities=9% Similarity=-0.007 Sum_probs=61.4
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcC-CC--CCCCHHHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLK-LG--FKVSTQEKKD 76 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~-~~--~~~~~~~~~~ 76 (286)
||||+++ +|+. |.+.++ ..++.++||+||+ ++..+|+.|.+.+..... .. .....++..+
T Consensus 38 KSTl~k~L~~~l-----G~~~~~----------~~~~~i~~v~~d~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (245)
T 2jeo_A 38 KSTVCEKIMELL-----GQNEVE----------QRQRKVVILSQDR-FYKVLTAEQKAKALKGQYNFDHPDAFDNDLMHR 101 (245)
T ss_dssp HHHHHHHHHHHH-----TGGGSC----------GGGCSEEEEEGGG-GBCCCCHHHHHHHHTTCCCTTSGGGBCHHHHHH
T ss_pred HHHHHHHHHHHh-----chhccc----------ccCCceEEEeCCc-CccccCHhHhhhhhccCCCCCCcccccHHHHHH
Confidence 7999999 8843 223333 2356799999996 677899999998876421 11 1122233344
Q ss_pred HHh-hh-----hhhcccCCccccC--------------CCcchHHHHHHHHHHHHHHhCCCEEEEEEcCC
Q psy8953 77 QVS-LE-----LWNNFCKKKKKKK--------------RGLDSSSCSQCVSLLANLAKQGRTVVATIHTP 126 (286)
Q Consensus 77 ~v~-l~-----~~~~~~gG~kqpt--------------sgLD~~~~~~~~~~l~~l~~~g~tii~~~h~~ 126 (286)
.++ +. ....+++|++|.. -++|+.....+. ++ .+.+|++++|..
T Consensus 102 ~L~~l~~~~~~~~~~ls~g~~~r~~~~~~~~~~~~lilDg~~~~~~~~l~----~~--~~~~i~v~th~~ 165 (245)
T 2jeo_A 102 TLKNIVEGKTVEVPTYDFVTHSRLPETTVVYPADVVLFEGILVFYSQEIR----DM--FHLRLFVDTDSD 165 (245)
T ss_dssp HHHHHHTTCCEEECCEETTTTEECSSCEEECCCSEEEEECTTTTTSHHHH----TT--CSEEEEEECCHH
T ss_pred HHHHHHCCCCeecccccccccCccCceEEecCCCEEEEeCccccccHHHH----Hh--cCeEEEEECCHH
Confidence 443 22 3345779998711 145544333221 11 378999999973
No 238
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.95 E-value=0.00038 Score=60.98 Aligned_cols=28 Identities=21% Similarity=0.258 Sum_probs=25.9
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHHcC
Q psy8953 251 EFKAGQLTAIMGPSGAGKSTLLNILAGL 278 (286)
Q Consensus 251 ~i~~Ge~~aivG~NGsGKSTLl~~l~GL 278 (286)
-+++|+++.|.|++|||||||+..++.-
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999999999873
No 239
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.93 E-value=1e-06 Score=76.74 Aligned_cols=124 Identities=12% Similarity=0.044 Sum_probs=75.3
Q ss_pred Cchhhhh-cCCCC-------CCceeEEEECCeecCchh---------------hhcccceeeEE---ecCcccCCCCCHH
Q psy8953 1 MSIELNV-QSIRL-------TGSSGKILVNGQERKSAC---------------IEQFLKLSCYI---QQDDALRPKLTVT 54 (286)
Q Consensus 1 ~stll~~-~g~~~-------~~~~G~i~~~g~~~~~~~---------------~~~~~~~~g~v---~Q~~~~~~~~tV~ 54 (286)
||||+|. .|..+ ..-.|+|.|+|.++.... ...+.+.++|+ +|++..++..+|.
T Consensus 17 KTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~q~~~~~~~~~v~ 96 (318)
T 1nij_A 17 KTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNLDKGNIQFDRLVI 96 (318)
T ss_dssp CHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHHHHTSCCCSEEEE
T ss_pred HHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHHhcCCCCCCEEEE
Confidence 8999999 88643 236899999999875421 12345668888 6877667788888
Q ss_pred HHHHHHHhcCCCCCC-CHHHHHHH--Hh-------h---h-hhhcccCCccc----------cCCCcchHHHHHHHHHHH
Q psy8953 55 EAMMIASHLKLGFKV-STQEKKDQ--VS-------L---E-LWNNFCKKKKK----------KKRGLDSSSCSQCVSLLA 110 (286)
Q Consensus 55 e~l~f~~~~~~~~~~-~~~~~~~~--v~-------l---~-~~~~~~gG~kq----------ptsgLD~~~~~~~~~~l~ 110 (286)
|++.++.-..+-... ..++..++ ++ + . ....+++||+| -+.-+|.. .++.+.|+
T Consensus 97 E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~~ls~g~~Q~~~ad~ill~k~dl~de~--~~l~~~l~ 174 (318)
T 1nij_A 97 ECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYADRILLTKTDVAGEA--EKLHERLA 174 (318)
T ss_dssp EEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHHHCHHHHHHHHTCSEEEEECTTTCSCT--HHHHHHHH
T ss_pred eCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHhhchHHHHHHHhCCEEEEECcccCCHH--HHHHHHHH
Confidence 877654100000000 00122222 21 1 1 22346799999 12223332 78888888
Q ss_pred HHHhCCCEEEEEEcCCC
Q psy8953 111 NLAKQGRTVVATIHTPS 127 (286)
Q Consensus 111 ~l~~~g~tii~~~h~~~ 127 (286)
+++ .+.||++++|.+.
T Consensus 175 ~l~-~~~~ii~~sh~~~ 190 (318)
T 1nij_A 175 RIN-ARAPVYTVTHGDI 190 (318)
T ss_dssp HHC-SSSCEEECCSSCC
T ss_pred HhC-CCCeEEEecccCC
Confidence 875 4889999999864
No 240
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.92 E-value=0.00033 Score=57.87 Aligned_cols=25 Identities=24% Similarity=0.437 Sum_probs=21.6
Q ss_pred EeCCCEEEEEcCCCCcHHHHHHHHH
Q psy8953 252 FKAGQLTAIMGPSGAGKSTLLNILA 276 (286)
Q Consensus 252 i~~Ge~~aivG~NGsGKSTLl~~l~ 276 (286)
+..|+.++|+|++||||||++..+.
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHH
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHH
Confidence 4579999999999999999887664
No 241
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.90 E-value=0.00024 Score=64.11 Aligned_cols=27 Identities=26% Similarity=0.288 Sum_probs=24.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCCC
Q psy8953 254 AGQLTAIMGPSGAGKSTLLNILAGLTY 280 (286)
Q Consensus 254 ~Ge~~aivG~NGsGKSTLl~~l~GL~~ 280 (286)
++.+++++|+|||||||++..|++.++
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~ 122 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYK 122 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999997654
No 242
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.88 E-value=0.00014 Score=71.03 Aligned_cols=36 Identities=25% Similarity=0.378 Sum_probs=31.9
Q ss_pred eeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCC
Q psy8953 248 ISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLNF 283 (286)
Q Consensus 248 ~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~~ 283 (286)
.++.+.+++.+.|+||+|+|||||+++|++.+..+|
T Consensus 504 ~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~ 539 (806)
T 1ypw_A 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANF 539 (806)
T ss_dssp TCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCC
T ss_pred HhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 356778999999999999999999999999877665
No 243
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.87 E-value=5.5e-05 Score=60.60 Aligned_cols=40 Identities=15% Similarity=0.025 Sum_probs=31.9
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCc
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDD 45 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~ 45 (286)
||||+++ +|+.. .+| |.++|...... ..+++.+||++|+.
T Consensus 14 KTTll~~l~g~~~--~~G-i~~~g~~~~~~--~~~~~~ig~~~~~~ 54 (189)
T 2i3b_A 14 KTTLIHKASEVLK--SSG-VPVDGFYTEEV--RQGGRRIGFDVVTL 54 (189)
T ss_dssp HHHHHHHHHHHHH--HTT-CCCEEEECCEE--ETTSSEEEEEEEET
T ss_pred HHHHHHHHHhhcc--cCC-EEEcCEecchh--HhhhceEEEEEEec
Confidence 7999999 99654 467 99999887542 45688999999984
No 244
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.85 E-value=0.00069 Score=58.83 Aligned_cols=27 Identities=26% Similarity=0.431 Sum_probs=25.3
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHHc
Q psy8953 251 EFKAGQLTAIMGPSGAGKSTLLNILAG 277 (286)
Q Consensus 251 ~i~~Ge~~aivG~NGsGKSTLl~~l~G 277 (286)
-+++|+++.|.|++|+|||||+..++.
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~ 129 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSV 129 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHH
Confidence 588999999999999999999999885
No 245
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=96.76 E-value=0.00067 Score=60.45 Aligned_cols=26 Identities=27% Similarity=0.234 Sum_probs=23.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCC
Q psy8953 254 AGQLTAIMGPSGAGKSTLLNILAGLT 279 (286)
Q Consensus 254 ~Ge~~aivG~NGsGKSTLl~~l~GL~ 279 (286)
.+.+++|+|++|||||||++.|++..
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~ 59 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLRE 59 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHH
Confidence 57799999999999999999998754
No 246
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.70 E-value=0.00082 Score=53.11 Aligned_cols=23 Identities=35% Similarity=0.592 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q psy8953 257 LTAIMGPSGAGKSTLLNILAGLT 279 (286)
Q Consensus 257 ~~aivG~NGsGKSTLl~~l~GL~ 279 (286)
.++|+|+.|||||||++.|++-.
T Consensus 50 ~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 50 SIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 67999999999999999998854
No 247
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.69 E-value=0.0011 Score=54.22 Aligned_cols=26 Identities=19% Similarity=0.345 Sum_probs=22.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCC
Q psy8953 254 AGQLTAIMGPSGAGKSTLLNILAGLT 279 (286)
Q Consensus 254 ~Ge~~aivG~NGsGKSTLl~~l~GL~ 279 (286)
.+..+.|.||+|+|||||++.++..+
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~ 76 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARA 76 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999997643
No 248
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.67 E-value=0.0008 Score=57.35 Aligned_cols=28 Identities=25% Similarity=0.355 Sum_probs=24.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCCCC
Q psy8953 254 AGQLTAIMGPSGAGKSTLLNILAGLTYL 281 (286)
Q Consensus 254 ~Ge~~aivG~NGsGKSTLl~~l~GL~~~ 281 (286)
++..+.|.||+|+|||||++.+++-...
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~~ 80 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECSA 80 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTTC
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhCC
Confidence 4678899999999999999999986543
No 249
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=96.66 E-value=9.3e-05 Score=71.89 Aligned_cols=121 Identities=14% Similarity=0.053 Sum_probs=71.9
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
|||||++ +|....... |..+.. ....+++|.| .+..+++.|++.++... . ..++.+...
T Consensus 620 KSTlLr~iagl~~~~q~------G~~vpa-----~~~~i~~~~~---i~~~~~~~d~l~~~~st-----f-~~e~~~~~~ 679 (800)
T 1wb9_A 620 KSTYMRQTALIALMAYI------GSYVPA-----QKVEIGPIDR---IFTRVGAADDLASGRST-----F-MVEMTETAN 679 (800)
T ss_dssp HHHHHHHHHHHHHHHTT------TCCBSS-----SEEEECCCCE---EEEEEC----------------C-HHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhc------Ccccch-----hcccceeHHH---HHhhCCHHHHHHhhhhh-----h-hHHHHHHHH
Confidence 7999999 884211111 222211 1245677766 56778888888776531 1 233333222
Q ss_pred -hh--------hhhcccCCccccCCCcchHHHHHH-HHHHHHHHhC-CCEEEEEEcCCCHHHHHHhhhHhhhcCCeeecc
Q psy8953 80 -LE--------LWNNFCKKKKKKKRGLDSSSCSQC-VSLLANLAKQ-GRTVVATIHTPSALLFEKFDSLYALAKGHCIYR 148 (286)
Q Consensus 80 -l~--------~~~~~~gG~kqptsgLD~~~~~~~-~~~l~~l~~~-g~tii~~~h~~~~~~~~~~d~v~~l~~G~i~~~ 148 (286)
+. ..|. |++|+|+.....+ +.+++.+++. |.++|+++|+.+ +..++|++..+.+|++.++
T Consensus 680 il~~a~~psLlLLDE-------p~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~e--l~~l~d~~~~v~n~~~~~~ 750 (800)
T 1wb9_A 680 ILHNATEYSLVLMDE-------IGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFE--LTQLPEKMEGVANVHLDAL 750 (800)
T ss_dssp HHHHCCTTEEEEEES-------CCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGG--GGGHHHHSTTEEEEEEEEE
T ss_pred HHHhccCCCEEEEEC-------CCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHH--HHHHhhhhhceEEEEEEEE
Confidence 11 2233 9999999877775 7899999884 999999999985 3468999988888988775
Q ss_pred cC
Q psy8953 149 GS 150 (286)
Q Consensus 149 g~ 150 (286)
..
T Consensus 751 ~~ 752 (800)
T 1wb9_A 751 EH 752 (800)
T ss_dssp EE
T ss_pred Ec
Confidence 43
No 250
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.64 E-value=0.00085 Score=58.98 Aligned_cols=27 Identities=19% Similarity=0.319 Sum_probs=24.0
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHHcCC
Q psy8953 253 KAGQLTAIMGPSGAGKSTLLNILAGLT 279 (286)
Q Consensus 253 ~~Ge~~aivG~NGsGKSTLl~~l~GL~ 279 (286)
..+..+.|.|++|+|||||++.+++.+
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 457899999999999999999998755
No 251
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.63 E-value=0.0015 Score=52.33 Aligned_cols=34 Identities=32% Similarity=0.345 Sum_probs=28.0
Q ss_pred cceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcC
Q psy8953 244 ILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278 (286)
Q Consensus 244 il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL 278 (286)
.++..-+.+ .|..++|+|+.|||||||+..|+.-
T Consensus 24 ~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 24 SMHGVLVDI-YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp CEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred eeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 566666666 5889999999999999999998753
No 252
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.63 E-value=0.0015 Score=56.25 Aligned_cols=34 Identities=35% Similarity=0.350 Sum_probs=30.1
Q ss_pred ccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHc
Q psy8953 243 EILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAG 277 (286)
Q Consensus 243 ~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~G 277 (286)
..+|+..+.+ .|.-++|+|++|+|||||+..|.+
T Consensus 133 ~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 133 TSLHGVLVDV-YGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp EEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred eeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence 4688888888 688999999999999999998875
No 253
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.61 E-value=0.0011 Score=58.43 Aligned_cols=27 Identities=26% Similarity=0.372 Sum_probs=23.5
Q ss_pred CCC--EEEEEcCCCCcHHHHHHHHHcCCC
Q psy8953 254 AGQ--LTAIMGPSGAGKSTLLNILAGLTY 280 (286)
Q Consensus 254 ~Ge--~~aivG~NGsGKSTLl~~l~GL~~ 280 (286)
.+. .+.|.||+|+|||||++.+++.+.
T Consensus 41 ~~~~~~~li~G~~G~GKTtl~~~l~~~~~ 69 (389)
T 1fnn_A 41 GHHYPRATLLGRPGTGKTVTLRKLWELYK 69 (389)
T ss_dssp TSSCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHh
Confidence 456 899999999999999999987654
No 254
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.61 E-value=0.0011 Score=56.85 Aligned_cols=26 Identities=31% Similarity=0.498 Sum_probs=22.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHcCCC
Q psy8953 255 GQLTAIMGPSGAGKSTLLNILAGLTY 280 (286)
Q Consensus 255 Ge~~aivG~NGsGKSTLl~~l~GL~~ 280 (286)
...+.|+||+|+|||||++.|++.+.
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~ 72 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLF 72 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHc
Confidence 35889999999999999999998653
No 255
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=96.60 E-value=0.00093 Score=58.82 Aligned_cols=25 Identities=36% Similarity=0.384 Sum_probs=22.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHcCC
Q psy8953 255 GQLTAIMGPSGAGKSTLLNILAGLT 279 (286)
Q Consensus 255 Ge~~aivG~NGsGKSTLl~~l~GL~ 279 (286)
.-.++|+|+||+|||||++.|+|..
T Consensus 167 ~~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 167 IPTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp SCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3478999999999999999999864
No 256
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.56 E-value=0.0013 Score=56.83 Aligned_cols=27 Identities=19% Similarity=0.351 Sum_probs=24.9
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHHc
Q psy8953 251 EFKAGQLTAIMGPSGAGKSTLLNILAG 277 (286)
Q Consensus 251 ~i~~Ge~~aivG~NGsGKSTLl~~l~G 277 (286)
-+++|+++.|.|++|+|||||+..++.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999999998874
No 257
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.55 E-value=0.0014 Score=52.38 Aligned_cols=24 Identities=29% Similarity=0.332 Sum_probs=21.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHHcCC
Q psy8953 256 QLTAIMGPSGAGKSTLLNILAGLT 279 (286)
Q Consensus 256 e~~aivG~NGsGKSTLl~~l~GL~ 279 (286)
..+.|.|++|+|||||++.++...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 678999999999999999998644
No 258
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.53 E-value=0.00066 Score=58.46 Aligned_cols=53 Identities=11% Similarity=0.131 Sum_probs=27.2
Q ss_pred Cchhhhh-cCCCCCCceeEEEE---CCeecCchhhhcccce-eeEEecCcccCC----CCCHHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILV---NGQERKSACIEQFLKL-SCYIQQDDALRP----KLTVTEAM 57 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~---~g~~~~~~~~~~~~~~-~g~v~Q~~~~~~----~~tV~e~l 57 (286)
||||+|+ +|.... .+|+|.+ +|+.+... ..+.+. .|||+|+|.+.. .+|+ |++
T Consensus 186 KSTLln~L~g~~~~-~~G~I~~~~~~G~~tt~~--~~~~~~~~g~v~dtpg~~~~~l~~lt~-e~l 247 (307)
T 1t9h_A 186 KSSLLNAISPELGL-RTNEISEHLGRGKHTTRH--VELIHTSGGLVADTPGFSSLEFTDIEE-EEL 247 (307)
T ss_dssp HHHHHHHHCC--------------------CCC--CCEEEETTEEEESSCSCSSCCCTTCCH-HHH
T ss_pred HHHHHHHhcccccc-cccceeeecCCCcccccH--HHHhhcCCEEEecCCCccccccccCCH-HHH
Confidence 8999999 996433 6899998 88876542 222233 899999996543 6899 888
No 259
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=96.52 E-value=0.0012 Score=65.11 Aligned_cols=60 Identities=13% Similarity=0.066 Sum_probs=52.1
Q ss_pred cCCCcchHHHHHH-HHHHHHHHhC-CCEEEEEEcCCCHHHHHHhhhHhhhcCCeeecccChhcH
Q psy8953 93 KKRGLDSSSCSQC-VSLLANLAKQ-GRTVVATIHTPSALLFEKFDSLYALAKGHCIYRGSISRL 154 (286)
Q Consensus 93 ptsgLD~~~~~~~-~~~l~~l~~~-g~tii~~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 154 (286)
|++|||+.....+ +.+++.++++ |.|+|+++|..+ +..++|++..+.+|++.+.++.+++
T Consensus 750 p~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~e--l~~lad~~~~v~ng~v~~~~~~~~l 811 (934)
T 3thx_A 750 LGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHE--LTALANQIPTVNNLHVTALTTEETL 811 (934)
T ss_dssp CSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGG--GGGGGGTCTTEEEEEEEEEEETTEE
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHH--HHHHhcccceeEeeEEEEEecCCcE
Confidence 9999999999888 7888999874 999999999964 4578999999999999988876654
No 260
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.51 E-value=0.0018 Score=56.97 Aligned_cols=27 Identities=30% Similarity=0.539 Sum_probs=24.5
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHHc
Q psy8953 251 EFKAGQLTAIMGPSGAGKSTLLNILAG 277 (286)
Q Consensus 251 ~i~~Ge~~aivG~NGsGKSTLl~~l~G 277 (286)
-+++|+++.|.|++|+|||||+..++.
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~ 85 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIA 85 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999999988874
No 261
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.49 E-value=0.0016 Score=56.70 Aligned_cols=28 Identities=36% Similarity=0.421 Sum_probs=23.8
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHHcCCC
Q psy8953 253 KAGQLTAIMGPSGAGKSTLLNILAGLTY 280 (286)
Q Consensus 253 ~~Ge~~aivG~NGsGKSTLl~~l~GL~~ 280 (286)
.++.+++|+||.|||||||+..|+.-+.
T Consensus 38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 38 RKEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 3566899999999999999999986543
No 262
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.48 E-value=0.0015 Score=55.58 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=20.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHHc
Q psy8953 256 QLTAIMGPSGAGKSTLLNILAG 277 (286)
Q Consensus 256 e~~aivG~NGsGKSTLl~~l~G 277 (286)
-+++|+|+.||||||+++.|+.
T Consensus 76 ~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999999983
No 263
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.45 E-value=0.0018 Score=55.98 Aligned_cols=33 Identities=18% Similarity=0.199 Sum_probs=28.3
Q ss_pred cceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHH
Q psy8953 244 ILHGISGEFKAGQLTAIMGPSGAGKSTLLNILA 276 (286)
Q Consensus 244 il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~ 276 (286)
.|+.+..-+++|+++.|.|+.|+|||||+..++
T Consensus 57 ~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia 89 (315)
T 3bh0_A 57 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQA 89 (315)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 355555568999999999999999999998887
No 264
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.42 E-value=0.0007 Score=61.88 Aligned_cols=119 Identities=12% Similarity=0.070 Sum_probs=73.2
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCch----hhhcc--cceeeEEecCcccCCCCCHHHHHHHHHhcCCC-------
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSA----CIEQF--LKLSCYIQQDDALRPKLTVTEAMMIASHLKLG------- 66 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~----~~~~~--~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~------- 66 (286)
||||++. +|+... .+|+|.++|.+.... +...| ++.++||+|++.+++.+||++++.|+...+..
T Consensus 306 KTTLl~~LAgll~~-~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~~a~~~~~DvVLIDTa 384 (503)
T 2yhs_A 306 KTTTIGKLARQFEQ-QGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKARNIDVLIADTA 384 (503)
T ss_dssp HHHHHHHHHHHHHH-TTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHHHHHHHTTCSEEEECCC
T ss_pred HHHHHHHHHHHhhh-cCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 7999999 996432 469999998776432 11222 56799999998888999999999998753211
Q ss_pred -CCCCHH----HHHHHHhhhhhhcccCCccccC---CCcchHHHHHHHHHHHHHHhC-CCEEEEEEc
Q psy8953 67 -FKVSTQ----EKKDQVSLELWNNFCKKKKKKK---RGLDSSSCSQCVSLLANLAKQ-GRTVVATIH 124 (286)
Q Consensus 67 -~~~~~~----~~~~~v~l~~~~~~~gG~kqpt---sgLD~~~~~~~~~~l~~l~~~-g~tii~~~h 124 (286)
+..... +..+++... ..+.-. .|. =-||+.+....++.++.+++. +.|.|+++|
T Consensus 385 Grl~~~~~lm~EL~kiv~ia--r~l~~~--~P~evLLvLDattGq~al~~ak~f~~~~~itgvIlTK 447 (503)
T 2yhs_A 385 GRLQNKSHLMEELKKIVRVM--KKLDVE--APHEVMLTIDASTGQNAVSQAKLFHEAVGLTGITLTK 447 (503)
T ss_dssp CSCCCHHHHHHHHHHHHHHH--HTTCTT--CSSEEEEEEEGGGTHHHHHHHHHHHHHTCCSEEEEEC
T ss_pred CccchhhhHHHHHHHHHHHH--HHhccC--CCCeeEEEecCcccHHHHHHHHHHHhhcCCCEEEEEc
Confidence 111111 111222210 000000 021 136666666666777888764 899999888
No 265
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.38 E-value=0.0026 Score=52.41 Aligned_cols=26 Identities=27% Similarity=0.503 Sum_probs=23.2
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHH
Q psy8953 251 EFKAGQLTAIMGPSGAGKSTLLNILA 276 (286)
Q Consensus 251 ~i~~Ge~~aivG~NGsGKSTLl~~l~ 276 (286)
=+++|+++.|.|+.|+|||||+..++
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 47899999999999999999987654
No 266
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.34 E-value=0.0021 Score=56.03 Aligned_cols=34 Identities=24% Similarity=0.335 Sum_probs=28.4
Q ss_pred cceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHc
Q psy8953 244 ILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAG 277 (286)
Q Consensus 244 il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~G 277 (286)
.|+.+..-+.+|+++.|.|++|+|||||+..++.
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~ 68 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVL 68 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHH
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 3555544689999999999999999999998864
No 267
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.34 E-value=0.0025 Score=49.79 Aligned_cols=26 Identities=23% Similarity=0.446 Sum_probs=22.2
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHHcC
Q psy8953 253 KAGQLTAIMGPSGAGKSTLLNILAGL 278 (286)
Q Consensus 253 ~~Ge~~aivG~NGsGKSTLl~~l~GL 278 (286)
..+..+.|.|+.|+|||||++.++..
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHH
Confidence 34568899999999999999998764
No 268
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.31 E-value=0.00061 Score=56.06 Aligned_cols=109 Identities=11% Similarity=0.100 Sum_probs=55.5
Q ss_pred Cchhhhh-cC--CCCC----CceeEEEECCeec-CchhhhcccceeeEEecC---c-ccCCCCCHHHHHHHHHhcCCCCC
Q psy8953 1 MSIELNV-QS--IRLT----GSSGKILVNGQER-KSACIEQFLKLSCYIQQD---D-ALRPKLTVTEAMMIASHLKLGFK 68 (286)
Q Consensus 1 ~stll~~-~g--~~~~----~~~G~i~~~g~~~-~~~~~~~~~~~~g~v~Q~---~-~~~~~~tV~e~l~f~~~~~~~~~ 68 (286)
||||+.. ++ ..+. .-.|.+++++... .......+.+.+|+++|+ . ..+...++.+......
T Consensus 37 KTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~------- 109 (243)
T 1n0w_A 37 KTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTDHQTQLLY------- 109 (243)
T ss_dssp HHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecCCHHHHHHHHH-------
Confidence 7999998 77 2321 2468899999874 211123344567777753 1 1122233333221110
Q ss_pred CCHHHHHHHHh-----hhhhhcccCCccccCCCcchH-------H-----HHHHHHHHHHHHhC-CCEEEEEEcCCC
Q psy8953 69 VSTQEKKDQVS-----LELWNNFCKKKKKKKRGLDSS-------S-----CSQCVSLLANLAKQ-GRTVVATIHTPS 127 (286)
Q Consensus 69 ~~~~~~~~~v~-----l~~~~~~~gG~kqptsgLD~~-------~-----~~~~~~~l~~l~~~-g~tii~~~h~~~ 127 (286)
++.+.+. +-..|. |++.+|+. + ..+++..|++++++ |.|||++.|...
T Consensus 110 ----~~~~~~~~~~~~lliiD~-------~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~ 175 (243)
T 1n0w_A 110 ----QASAMMVESRYALLIVDS-------ATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVA 175 (243)
T ss_dssp ----HHHHHHHHSCEEEEEEET-------SSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC----
T ss_pred ----HHHHHHhcCCceEEEEeC-------chHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeee
Confidence 1111111 002233 77777764 3 45677777777765 999999999754
No 269
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.31 E-value=0.0024 Score=52.97 Aligned_cols=22 Identities=27% Similarity=0.302 Sum_probs=20.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHH
Q psy8953 255 GQLTAIMGPSGAGKSTLLNILA 276 (286)
Q Consensus 255 Ge~~aivG~NGsGKSTLl~~l~ 276 (286)
+-.++|+|+.||||||+++.|+
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~ 50 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLK 50 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4478999999999999999996
No 270
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.29 E-value=0.0018 Score=54.79 Aligned_cols=31 Identities=26% Similarity=0.368 Sum_probs=25.4
Q ss_pred EeCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 252 FKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 252 i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
+.++..+.|.||.|+|||||++.++..+...
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~~~~ 78 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATETNAT 78 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHTTCE
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 3456679999999999999999998765443
No 271
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.27 E-value=0.0023 Score=57.57 Aligned_cols=26 Identities=27% Similarity=0.286 Sum_probs=22.8
Q ss_pred EeCCCEEEEEcCCCCcHHHHHHHHHc
Q psy8953 252 FKAGQLTAIMGPSGAGKSTLLNILAG 277 (286)
Q Consensus 252 i~~Ge~~aivG~NGsGKSTLl~~l~G 277 (286)
-.+..++.|+|++||||||+++.|+.
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34678999999999999999999874
No 272
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.25 E-value=0.0023 Score=51.79 Aligned_cols=22 Identities=32% Similarity=0.453 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy8953 257 LTAIMGPSGAGKSTLLNILAGL 278 (286)
Q Consensus 257 ~~aivG~NGsGKSTLl~~l~GL 278 (286)
.++|+|..|||||||++.|++-
T Consensus 32 ~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 32 AVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999998764
No 273
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.20 E-value=0.0015 Score=58.37 Aligned_cols=24 Identities=33% Similarity=0.375 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHhC-CCEEEEEEcCC
Q psy8953 103 SQCVSLLANLAKQ-GRTVVATIHTP 126 (286)
Q Consensus 103 ~~~~~~l~~l~~~-g~tii~~~h~~ 126 (286)
.++++.|++++++ |+|||++.|..
T Consensus 304 ~~il~~L~~lake~gitVIlv~Hv~ 328 (400)
T 3lda_A 304 AKFMRALQRLADQFGVAVVVTNQVV 328 (400)
T ss_dssp HHHHHHHHHHHHHHCCEEEEEEEC-
T ss_pred HHHHHHHHHHHHHcCCEEEEEEeec
Confidence 6788999999875 99999999983
No 274
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.18 E-value=0.0029 Score=47.93 Aligned_cols=26 Identities=19% Similarity=0.240 Sum_probs=22.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCC
Q psy8953 254 AGQLTAIMGPSGAGKSTLLNILAGLT 279 (286)
Q Consensus 254 ~Ge~~aivG~NGsGKSTLl~~l~GL~ 279 (286)
.+..+.|.|+.|+|||++++.|+...
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 45678999999999999999998653
No 275
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.15 E-value=0.0023 Score=55.32 Aligned_cols=25 Identities=28% Similarity=0.333 Sum_probs=22.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHcCC
Q psy8953 255 GQLTAIMGPSGAGKSTLLNILAGLT 279 (286)
Q Consensus 255 Ge~~aivG~NGsGKSTLl~~l~GL~ 279 (286)
+..+.|.||+|+|||||++.++..+
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~ 61 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEA 61 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH
Confidence 4578999999999999999998754
No 276
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.11 E-value=0.0036 Score=50.76 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q psy8953 257 LTAIMGPSGAGKSTLLNILAGLT 279 (286)
Q Consensus 257 ~~aivG~NGsGKSTLl~~l~GL~ 279 (286)
.+.|.|+.|+|||||++.++..+
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 78999999999999999997543
No 277
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.10 E-value=0.0025 Score=52.01 Aligned_cols=27 Identities=22% Similarity=0.418 Sum_probs=22.9
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHHc
Q psy8953 251 EFKAGQLTAIMGPSGAGKSTLLNILAG 277 (286)
Q Consensus 251 ~i~~Ge~~aivG~NGsGKSTLl~~l~G 277 (286)
.+.+..++.|+||-||||+|.++.|+-
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 345667899999999999999999873
No 278
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.09 E-value=0.0029 Score=49.27 Aligned_cols=26 Identities=23% Similarity=0.350 Sum_probs=22.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCC
Q psy8953 254 AGQLTAIMGPSGAGKSTLLNILAGLT 279 (286)
Q Consensus 254 ~Ge~~aivG~NGsGKSTLl~~l~GL~ 279 (286)
.+..+.|.|+.|+|||||++.++..+
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 45678999999999999999987643
No 279
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.05 E-value=0.0018 Score=58.53 Aligned_cols=24 Identities=29% Similarity=0.427 Sum_probs=21.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHHcCC
Q psy8953 256 QLTAIMGPSGAGKSTLLNILAGLT 279 (286)
Q Consensus 256 e~~aivG~NGsGKSTLl~~l~GL~ 279 (286)
.+++|+|++|+||||++..|++.+
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 589999999999999999998754
No 280
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.04 E-value=0.0026 Score=56.29 Aligned_cols=109 Identities=14% Similarity=0.110 Sum_probs=64.1
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
||||++. +|+.+...+|.|.++|.++. ..++..++||+|...-....+....|+-++.. .
T Consensus 149 KTTll~~l~~~~~~~~~g~I~~~e~~~e----~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~~--~------------- 209 (372)
T 2ewv_A 149 KSTTIASMIDYINQTKSYHIITIEDPIE----YVFKHKKSIVNQREVGEDTKSFADALRAALRE--D------------- 209 (372)
T ss_dssp HHHHHHHHHHHHHHHSCCEEEEEESSCC----SCCCCSSSEEEEEEBTTTBSCSHHHHHHHTTS--C-------------
T ss_pred HHHHHHHHHhhcCcCCCcEEEEecccHh----hhhccCceEEEeeecCCCHHHHHHHHHHHhhh--C-------------
Confidence 8999999 98654323799988887653 23467789999942111001113334333332 1
Q ss_pred hhhhhcccCCccccCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHhhhHhhhcC
Q psy8953 80 LELWNNFCKKKKKKKRGLDSSSCSQCVSLLANLAKQGRTVVATIHTPSALLFEKFDSLYALAK 142 (286)
Q Consensus 80 l~~~~~~~gG~kqptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~~~~~~~~~~d~v~~l~~ 142 (286)
++.+.=|| |+ |+..... +++. +..|.+++.+.|..+ +...+||++.|..
T Consensus 210 ---pd~illdE--~~---d~e~~~~---~l~~-~~~g~~vi~t~H~~~--~~~~~~rl~~l~~ 258 (372)
T 2ewv_A 210 ---PDVIFVGE--MR---DLETVET---ALRA-AETGHLVFGTLHTNT--AIDTIHRIVDIFP 258 (372)
T ss_dssp ---CSEEEESC--CC---SHHHHHH---HHHH-HTTTCEEEECCCCCS--HHHHHHHHHHTSC
T ss_pred ---cCEEEECC--CC---CHHHHHH---HHHH-HhcCCEEEEEECcch--HHHHHHHHHHhcC
Confidence 11111111 55 6655433 3443 345899999999965 5688999998753
No 281
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.03 E-value=0.00018 Score=59.81 Aligned_cols=106 Identities=10% Similarity=0.051 Sum_probs=68.9
Q ss_pred Cchhhhh-c---CCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhc---------CCCC
Q psy8953 1 MSIELNV-Q---SIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHL---------KLGF 67 (286)
Q Consensus 1 ~stll~~-~---g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~---------~~~~ 67 (286)
||||++. + |.... .+|+|.++|.+... .....+.+++|++.+++..+|.+.+.+.+.. +.+.
T Consensus 40 KSTl~k~La~~lg~~~~-~~G~i~~~~~~~~~----~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~~~~~~il~g~~~ 114 (246)
T 2bbw_A 40 KGTVCQRIAQNFGLQHL-SSGHFLRENIKAST----EVGEMAKQYIEKSLLVPDHVITRLMMSELENRRGQHWLLDGFPR 114 (246)
T ss_dssp HHHHHHHHHHHHCCCCE-EHHHHHHHHHHTTC----HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTCTTSCEEEESCCC
T ss_pred HHHHHHHHHHHhCCeEe-cHHHHHHHHHhcCC----hHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCeEEEECCCC
Confidence 7999999 9 86432 56778777754321 2345567788888888999999999886531 1121
Q ss_pred CCCHHHHHHH-----Hh------------hh-----hhhcccCCcc-------------------ccCCCcchHHHHHHH
Q psy8953 68 KVSTQEKKDQ-----VS------------LE-----LWNNFCKKKK-------------------KKKRGLDSSSCSQCV 106 (286)
Q Consensus 68 ~~~~~~~~~~-----v~------------l~-----~~~~~~gG~k-------------------qptsgLD~~~~~~~~ 106 (286)
..++.+.. ++ +. ..+.+|| | .||++||+.+...+.
T Consensus 115 --~~~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg--rv~al~~~~P~~lllD~~~~EP~~~ld~~~~~~i~ 190 (246)
T 2bbw_A 115 --TLGQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG--RVYNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVA 190 (246)
T ss_dssp --SHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT--EEEETTTSCCSSTTBCTTTCCBCBCCGGGSHHHHH
T ss_pred --CHHHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC--CccccccCCCcccccccccccccccCCCCcHHHHH
Confidence 22222111 11 11 1223445 3 599999999999999
Q ss_pred HHHHHHHhC
Q psy8953 107 SLLANLAKQ 115 (286)
Q Consensus 107 ~~l~~l~~~ 115 (286)
+.|+.+.++
T Consensus 191 ~~l~~~~~~ 199 (246)
T 2bbw_A 191 ARLRQYKDV 199 (246)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999988764
No 282
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=96.03 E-value=0.0017 Score=52.65 Aligned_cols=24 Identities=42% Similarity=0.481 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q psy8953 257 LTAIMGPSGAGKSTLLNILAGLTY 280 (286)
Q Consensus 257 ~~aivG~NGsGKSTLl~~l~GL~~ 280 (286)
.++|+|..|+|||||++.|+|-.+
T Consensus 31 ~i~v~G~~~~GKSslin~l~~~~~ 54 (223)
T 4dhe_A 31 EIAFAGRSNAGKSTAINVLCNQKR 54 (223)
T ss_dssp EEEEEESCHHHHHHHHHHHTTCSS
T ss_pred EEEEEcCCCCCHHHHHHHHhCCCc
Confidence 579999999999999999998753
No 283
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.03 E-value=0.0013 Score=57.27 Aligned_cols=35 Identities=20% Similarity=0.338 Sum_probs=25.7
Q ss_pred ceeeeeEEeCC--CEEEEEcCCCCcHHHHHHHHHcCC
Q psy8953 245 LHGISGEFKAG--QLTAIMGPSGAGKSTLLNILAGLT 279 (286)
Q Consensus 245 l~~~~l~i~~G--e~~aivG~NGsGKSTLl~~l~GL~ 279 (286)
++.+.-.+..| ..+.|.||+|+|||||++.+++.+
T Consensus 46 ~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l 82 (353)
T 1sxj_D 46 VTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKEL 82 (353)
T ss_dssp HHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 33333334444 458999999999999999998764
No 284
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.01 E-value=0.0036 Score=56.71 Aligned_cols=33 Identities=24% Similarity=0.395 Sum_probs=28.0
Q ss_pred ceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHc
Q psy8953 245 LHGISGEFKAGQLTAIMGPSGAGKSTLLNILAG 277 (286)
Q Consensus 245 l~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~G 277 (286)
|+.+..-+++|+++.|.|+.|+|||||+..++.
T Consensus 190 LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~ 222 (444)
T 2q6t_A 190 LDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQ 222 (444)
T ss_dssp HHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHH
T ss_pred hhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 454444589999999999999999999988874
No 285
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=95.98 E-value=0.0037 Score=50.41 Aligned_cols=22 Identities=32% Similarity=0.570 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy8953 257 LTAIMGPSGAGKSTLLNILAGL 278 (286)
Q Consensus 257 ~~aivG~NGsGKSTLl~~l~GL 278 (286)
-++|+|+.|+|||||++.+++-
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4799999999999999999863
No 286
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=95.97 E-value=0.004 Score=50.43 Aligned_cols=22 Identities=50% Similarity=0.819 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy8953 257 LTAIMGPSGAGKSTLLNILAGL 278 (286)
Q Consensus 257 ~~aivG~NGsGKSTLl~~l~GL 278 (286)
-++|+|..|+|||||++.++|-
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999874
No 287
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=95.97 E-value=0.0035 Score=51.15 Aligned_cols=22 Identities=27% Similarity=0.505 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy8953 257 LTAIMGPSGAGKSTLLNILAGL 278 (286)
Q Consensus 257 ~~aivG~NGsGKSTLl~~l~GL 278 (286)
.++|+|+.|+|||||++.++|-
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4799999999999999999874
No 288
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.95 E-value=0.004 Score=56.52 Aligned_cols=31 Identities=23% Similarity=0.381 Sum_probs=26.8
Q ss_pred eEEeCCCEEEEEcCCCCcHHHHHHHHHcCCC
Q psy8953 250 GEFKAGQLTAIMGPSGAGKSTLLNILAGLTY 280 (286)
Q Consensus 250 l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~ 280 (286)
..+-+|+.++|+|++|+|||||++.|+.-..
T Consensus 146 ~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~ 176 (473)
T 1sky_E 146 APYIKGGKIGLFGGAGVGKTVLIQELIHNIA 176 (473)
T ss_dssp SCEETTCEEEEECCSSSCHHHHHHHHHHHHH
T ss_pred hhhccCCEEEEECCCCCCccHHHHHHHhhhh
Confidence 4677899999999999999999999876443
No 289
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.90 E-value=0.0041 Score=50.45 Aligned_cols=22 Identities=32% Similarity=0.460 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy8953 257 LTAIMGPSGAGKSTLLNILAGL 278 (286)
Q Consensus 257 ~~aivG~NGsGKSTLl~~l~GL 278 (286)
.++|+|..|+|||||+..++.-
T Consensus 40 ~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 40 AFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6799999999999999988754
No 290
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.90 E-value=0.0035 Score=56.78 Aligned_cols=25 Identities=28% Similarity=0.343 Sum_probs=22.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHcCC
Q psy8953 255 GQLTAIMGPSGAGKSTLLNILAGLT 279 (286)
Q Consensus 255 Ge~~aivG~NGsGKSTLl~~l~GL~ 279 (286)
+..+.|.||+|+|||||++.|++.+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l 154 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4678999999999999999998755
No 291
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=95.85 E-value=0.0038 Score=49.47 Aligned_cols=21 Identities=33% Similarity=0.384 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy8953 257 LTAIMGPSGAGKSTLLNILAG 277 (286)
Q Consensus 257 ~~aivG~NGsGKSTLl~~l~G 277 (286)
-++|+|+.|+|||||++.+++
T Consensus 31 ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 31 RILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp EEEEEESTTSSHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 479999999999999999865
No 292
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.85 E-value=0.0058 Score=53.88 Aligned_cols=26 Identities=35% Similarity=0.606 Sum_probs=23.9
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHH
Q psy8953 251 EFKAGQLTAIMGPSGAGKSTLLNILA 276 (286)
Q Consensus 251 ~i~~Ge~~aivG~NGsGKSTLl~~l~ 276 (286)
-+++|+++.|.|+.|+|||||+..++
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la 95 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIV 95 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHH
Confidence 47899999999999999999998876
No 293
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.84 E-value=0.0038 Score=51.85 Aligned_cols=28 Identities=29% Similarity=0.447 Sum_probs=22.9
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHHcCCC
Q psy8953 253 KAGQLTAIMGPSGAGKSTLLNILAGLTY 280 (286)
Q Consensus 253 ~~Ge~~aivG~NGsGKSTLl~~l~GL~~ 280 (286)
.....+.|.||.|+|||||++.++.-+.
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~~ 64 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEAQ 64 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3445688999999999999999987443
No 294
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.82 E-value=0.005 Score=55.57 Aligned_cols=25 Identities=28% Similarity=0.422 Sum_probs=22.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHcC
Q psy8953 254 AGQLTAIMGPSGAGKSTLLNILAGL 278 (286)
Q Consensus 254 ~Ge~~aivG~NGsGKSTLl~~l~GL 278 (286)
++.+++++|++|+||||++..|+..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~ 123 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARY 123 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHH
Confidence 4679999999999999999999853
No 295
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=95.80 E-value=0.0048 Score=51.67 Aligned_cols=23 Identities=35% Similarity=0.573 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q psy8953 257 LTAIMGPSGAGKSTLLNILAGLT 279 (286)
Q Consensus 257 ~~aivG~NGsGKSTLl~~l~GL~ 279 (286)
.++|+|..|+|||||++.|.|-.
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46999999999999999999844
No 296
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=95.80 E-value=0.0047 Score=51.85 Aligned_cols=25 Identities=36% Similarity=0.477 Sum_probs=22.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHHcCCC
Q psy8953 256 QLTAIMGPSGAGKSTLLNILAGLTY 280 (286)
Q Consensus 256 e~~aivG~NGsGKSTLl~~l~GL~~ 280 (286)
-.++|+|.+|+|||||++.|+|-..
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~ 124 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRA 124 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccc
Confidence 4789999999999999999998654
No 297
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.79 E-value=0.0011 Score=55.59 Aligned_cols=28 Identities=32% Similarity=0.619 Sum_probs=22.5
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHHcCCC
Q psy8953 251 EFKAGQLTAIMGPSGAGKSTLLNILAGLTY 280 (286)
Q Consensus 251 ~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~ 280 (286)
...+| +.|.||.|+|||||++.|+.-..
T Consensus 42 ~~~~~--vll~G~~GtGKT~la~~la~~~~ 69 (268)
T 2r62_A 42 KIPKG--VLLVGPPGTGKTLLAKAVAGEAH 69 (268)
T ss_dssp CCCSC--CCCBCSSCSSHHHHHHHHHHHHT
T ss_pred CCCce--EEEECCCCCcHHHHHHHHHHHhC
Confidence 34445 78999999999999999997543
No 298
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=95.75 E-value=0.005 Score=51.74 Aligned_cols=23 Identities=35% Similarity=0.566 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q psy8953 257 LTAIMGPSGAGKSTLLNILAGLT 279 (286)
Q Consensus 257 ~~aivG~NGsGKSTLl~~l~GL~ 279 (286)
.++++|+.|+|||||++.|+|-.
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46999999999999999999744
No 299
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=95.67 E-value=0.0055 Score=48.88 Aligned_cols=22 Identities=14% Similarity=0.265 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy8953 257 LTAIMGPSGAGKSTLLNILAGL 278 (286)
Q Consensus 257 ~~aivG~NGsGKSTLl~~l~GL 278 (286)
-++|+|+.|+|||||++.+++-
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhhC
Confidence 4799999999999999998764
No 300
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=95.61 E-value=0.005 Score=55.60 Aligned_cols=27 Identities=33% Similarity=0.577 Sum_probs=24.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCC
Q psy8953 257 LTAIMGPSGAGKSTLLNILAGLTYLNF 283 (286)
Q Consensus 257 ~~aivG~NGsGKSTLl~~l~GL~~~~~ 283 (286)
.+.+.||.|+||||+++.|++.+...|
T Consensus 52 ~iLl~GppGtGKT~lar~lA~~l~~~~ 78 (444)
T 1g41_A 52 NILMIGPTGVGKTEIARRLAKLANAPF 78 (444)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred eEEEEcCCCCCHHHHHHHHHHHcCCCc
Confidence 478999999999999999999887765
No 301
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=95.61 E-value=0.0058 Score=48.84 Aligned_cols=21 Identities=24% Similarity=0.363 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy8953 257 LTAIMGPSGAGKSTLLNILAG 277 (286)
Q Consensus 257 ~~aivG~NGsGKSTLl~~l~G 277 (286)
-++|+|..|+|||||++.+++
T Consensus 32 ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 32 KCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 469999999999999988875
No 302
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.59 E-value=0.007 Score=52.25 Aligned_cols=27 Identities=26% Similarity=0.470 Sum_probs=24.6
Q ss_pred eEEeCCCEEEEEcCCCCcHHHHHHHHH
Q psy8953 250 GEFKAGQLTAIMGPSGAGKSTLLNILA 276 (286)
Q Consensus 250 l~i~~Ge~~aivG~NGsGKSTLl~~l~ 276 (286)
.-+.+|.++.|.|+.|+|||||+..++
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA 144 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALG 144 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHH
Confidence 468889999999999999999999987
No 303
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.55 E-value=0.0056 Score=53.78 Aligned_cols=28 Identities=32% Similarity=0.521 Sum_probs=23.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCCCC
Q psy8953 254 AGQLTAIMGPSGAGKSTLLNILAGLTYL 281 (286)
Q Consensus 254 ~Ge~~aivG~NGsGKSTLl~~l~GL~~~ 281 (286)
++..+.|.||.|+||||+++.|+..+..
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~~~ 77 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLLDV 77 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCC
Confidence 3457899999999999999999976543
No 304
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.55 E-value=0.0024 Score=57.38 Aligned_cols=114 Identities=11% Similarity=0.065 Sum_probs=52.2
Q ss_pred Cchhhhh-cCCCCC-CceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHH
Q psy8953 1 MSIELNV-QSIRLT-GSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQV 78 (286)
Q Consensus 1 ~stll~~-~g~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v 78 (286)
||||+|. +|.... .-.|.+.+++.+ ....+.++|++|++.+++.+||+|++.|+....- ......+.+.+
T Consensus 44 KSTLln~L~g~~~~~~~~~~~~~~~~~------t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~--~~~~~~i~~~i 115 (418)
T 2qag_C 44 KSTLINSLFLTDLYSPEYPGPSHRIKK------TVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDN--SNCWQPVIDYI 115 (418)
T ss_dssp HHHHHHHHTTCCCCCCCCCSCC-----------CCEEEEEECC------CEEEEEEECC-------------CHHHHHHH
T ss_pred HHHHHHHHhCCCCCCCCCCCcccCCcc------ceeeeeEEEEEecCCcccceeeeechhhhhhccc--hhhHHHHHHHH
Confidence 7999999 986431 112222222211 1123679999999988999999999999765210 00011121112
Q ss_pred h--hh-h-------hhcccCCcc-c-------cC-CCcchHHHHHHHHHHHHHHhCCCEEEEEEcCCC
Q psy8953 79 S--LE-L-------WNNFCKKKK-K-------KK-RGLDSSSCSQCVSLLANLAKQGRTVVATIHTPS 127 (286)
Q Consensus 79 ~--l~-~-------~~~~~gG~k-q-------pt-sgLD~~~~~~~~~~l~~l~~~g~tii~~~h~~~ 127 (286)
+ +. . .-.+..+-+ - || .+||+... .+++.|.. +.+||++.|+.+
T Consensus 116 ~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~~-~v~iIlVinK~D 178 (418)
T 2qag_C 116 DSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI----EFMKRLHE-KVNIIPLIAKAD 178 (418)
T ss_dssp HHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH----HHHHHHTT-TSEEEEEEESTT
T ss_pred HHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHH----HHHHHHhc-cCcEEEEEEccc
Confidence 1 11 0 011111111 0 88 69998763 44555554 789999999865
No 305
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=95.44 E-value=0.00025 Score=68.49 Aligned_cols=97 Identities=12% Similarity=0.067 Sum_probs=53.6
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
|||||++ +|.......|.+ +. ..+..+|||+| +|..+++.|++.++..- -..++.+...
T Consensus 589 KSTlLr~iagl~~~~~~G~~------vp-----a~~~~i~~v~~---i~~~~~~~d~l~~g~S~------~~~e~~~la~ 648 (765)
T 1ewq_A 589 KSTFLRQTALIALLAQVGSF------VP-----AEEAHLPLFDG---IYTRIGASDDLAGGKST------FMVEMEEVAL 648 (765)
T ss_dssp HHHHHHHHHHHHHHHTTTCC------BS-----SSEEEECCCSE---EEEECCC------CCSH------HHHHHHHHHH
T ss_pred hHHHHHHHHhhhhhcccCce------ee-----hhccceeeHHH---hhccCCHHHHHHhcccH------HHHHHHHHHH
Confidence 7999999 985321122322 11 12356888887 66778999988764321 0112221111
Q ss_pred -hh--------hhhcccCCcccc---CCCcchHHH-HHHHHHHHHHHhCCCEEEEEEcCCC
Q psy8953 80 -LE--------LWNNFCKKKKKK---KRGLDSSSC-SQCVSLLANLAKQGRTVVATIHTPS 127 (286)
Q Consensus 80 -l~--------~~~~~~gG~kqp---tsgLD~~~~-~~~~~~l~~l~~~g~tii~~~h~~~ 127 (286)
+. ..|. | |++||+.+. ..+++.|++ .|.|+|+++|+.+
T Consensus 649 il~~a~~p~LlLLDE-------pgrGTs~lD~~~~~~~i~~~L~~---~g~~vl~~TH~~~ 699 (765)
T 1ewq_A 649 ILKEATENSLVLLDE-------VGRGTSSLDGVAIATAVAEALHE---RRAYTLFATHYFE 699 (765)
T ss_dssp HHHHCCTTEEEEEES-------TTTTSCHHHHHHHHHHHHHHHHH---HTCEEEEECCCHH
T ss_pred HHHhccCCCEEEEEC-------CCCCCCCcCHHHHHHHHHHHHHh---CCCEEEEEeCCHH
Confidence 11 1122 6 999999886 467776665 5889999999963
No 306
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=95.43 E-value=0.0052 Score=59.66 Aligned_cols=26 Identities=23% Similarity=0.507 Sum_probs=22.7
Q ss_pred EeCCCEEEEEcCCCCcHHHHHHHHHc
Q psy8953 252 FKAGQLTAIMGPSGAGKSTLLNILAG 277 (286)
Q Consensus 252 i~~Ge~~aivG~NGsGKSTLl~~l~G 277 (286)
+..|+.+.|+|||||||||++..+++
T Consensus 106 l~~~~~vii~gpTGSGKTtllp~ll~ 131 (773)
T 2xau_A 106 YQNNQIMVFVGETGSGKTTQIPQFVL 131 (773)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHH
T ss_pred HhCCCeEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999998888754
No 307
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.42 E-value=0.0082 Score=52.67 Aligned_cols=24 Identities=33% Similarity=0.426 Sum_probs=21.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHcC
Q psy8953 255 GQLTAIMGPSGAGKSTLLNILAGL 278 (286)
Q Consensus 255 Ge~~aivG~NGsGKSTLl~~l~GL 278 (286)
.-+++|+|+.|+|||||+..|++.
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~ 102 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMH 102 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 347899999999999999999754
No 308
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.42 E-value=0.0061 Score=51.87 Aligned_cols=53 Identities=21% Similarity=0.218 Sum_probs=38.3
Q ss_pred cCC---C---cch-HHHHHHHHHHHHHHhC-CCEEEEEEcCC--CH-------------------HHHHHhhhHhhhcCC
Q psy8953 93 KKR---G---LDS-SSCSQCVSLLANLAKQ-GRTVVATIHTP--SA-------------------LLFEKFDSLYALAKG 143 (286)
Q Consensus 93 pts---g---LD~-~~~~~~~~~l~~l~~~-g~tii~~~h~~--~~-------------------~~~~~~d~v~~l~~G 143 (286)
||+ + +|+ ....++++.|++++++ |+|||++.|.. +. .+...+|+|++|.+|
T Consensus 156 pt~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~ 235 (296)
T 1cr0_A 156 ISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERN 235 (296)
T ss_dssp EC-----------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC
T ss_pred ccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecC
Confidence 776 4 566 7778999999999875 99999999995 31 466789999999988
Q ss_pred ee
Q psy8953 144 HC 145 (286)
Q Consensus 144 ~i 145 (286)
+.
T Consensus 236 ~~ 237 (296)
T 1cr0_A 236 QQ 237 (296)
T ss_dssp --
T ss_pred cc
Confidence 64
No 309
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.40 E-value=0.01 Score=50.64 Aligned_cols=26 Identities=31% Similarity=0.433 Sum_probs=22.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCC
Q psy8953 254 AGQLTAIMGPSGAGKSTLLNILAGLT 279 (286)
Q Consensus 254 ~Ge~~aivG~NGsGKSTLl~~l~GL~ 279 (286)
++..+.|.||.|+|||||++.++..+
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 45678999999999999999887654
No 310
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.33 E-value=0.0039 Score=50.63 Aligned_cols=51 Identities=10% Similarity=-0.038 Sum_probs=39.8
Q ss_pred cCCCc--chHHHHHHHHHHHHHHh-CCCEEEEEEcCCC-------HHHHHHhhhHhhhcCC
Q psy8953 93 KKRGL--DSSSCSQCVSLLANLAK-QGRTVVATIHTPS-------ALLFEKFDSLYALAKG 143 (286)
Q Consensus 93 ptsgL--D~~~~~~~~~~l~~l~~-~g~tii~~~h~~~-------~~~~~~~d~v~~l~~G 143 (286)
||+.+ |+..+.++++.|+++++ .|.|||++.|... ..+...+|++++|...
T Consensus 132 ~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 132 VSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp GGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred chHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 77666 99999999999999976 4999999999983 2366779999988754
No 311
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.31 E-value=0.0096 Score=47.54 Aligned_cols=22 Identities=32% Similarity=0.368 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy8953 257 LTAIMGPSGAGKSTLLNILAGL 278 (286)
Q Consensus 257 ~~aivG~NGsGKSTLl~~l~GL 278 (286)
.+.|.|+.|+|||||++.++.-
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999998753
No 312
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.22 E-value=0.0085 Score=52.52 Aligned_cols=27 Identities=15% Similarity=0.287 Sum_probs=22.9
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHHcCC
Q psy8953 253 KAGQLTAIMGPSGAGKSTLLNILAGLT 279 (286)
Q Consensus 253 ~~Ge~~aivG~NGsGKSTLl~~l~GL~ 279 (286)
..+..+.|.||.|+|||||++.++.-+
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 356689999999999999999998543
No 313
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.19 E-value=0.0043 Score=46.83 Aligned_cols=26 Identities=12% Similarity=0.066 Sum_probs=22.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCC
Q psy8953 254 AGQLTAIMGPSGAGKSTLLNILAGLT 279 (286)
Q Consensus 254 ~Ge~~aivG~NGsGKSTLl~~l~GL~ 279 (286)
.+..+.|.|+.|+|||++++.|+...
T Consensus 26 ~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp CSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred CCCcEEEECCCCccHHHHHHHHHHhC
Confidence 45678999999999999999997643
No 314
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.18 E-value=0.0096 Score=52.25 Aligned_cols=28 Identities=21% Similarity=0.342 Sum_probs=23.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCCCC
Q psy8953 254 AGQLTAIMGPSGAGKSTLLNILAGLTYL 281 (286)
Q Consensus 254 ~Ge~~aivG~NGsGKSTLl~~l~GL~~~ 281 (286)
+...+.|.||.|+|||||++.++.....
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~~~ 143 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQSGA 143 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHTTC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcCC
Confidence 4567899999999999999999875543
No 315
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.15 E-value=0.0049 Score=53.70 Aligned_cols=114 Identities=5% Similarity=-0.025 Sum_probs=54.4
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQVS 79 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v~ 79 (286)
||||+++ ++...+...|+|.++|.+.... ......++|++|.+.+..... ..+ ......+++.++
T Consensus 49 KTtl~~~la~~l~~~~~g~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~---------~~~---~~~~~~~~~~i~ 114 (354)
T 1sxj_E 49 KKTRCMALLESIFGPGVYRLKIDVRQFVTA--SNRKLELNVVSSPYHLEITPS---------DMG---NNDRIVIQELLK 114 (354)
T ss_dssp HHHHHHTHHHHHSCTTCCC--------------------CCEECSSEEEECCC----------------CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCeEEecceeeccc--ccccceeeeecccceEEecHh---------hcC---CcchHHHHHHHH
Confidence 7999999 8832233578899999876532 122567899999875321111 000 001112222222
Q ss_pred -hhh---hh---cccC--Cccc------cCCCcchHHHHHHHHHHHHHHhCCCEEEEEEcCCCHHH
Q psy8953 80 -LEL---WN---NFCK--KKKK------KKRGLDSSSCSQCVSLLANLAKQGRTVVATIHTPSALL 130 (286)
Q Consensus 80 -l~~---~~---~~~g--G~kq------ptsgLD~~~~~~~~~~l~~l~~~g~tii~~~h~~~~~~ 130 (286)
+.. .+ .++| +..+ |++ ||+.++..+++.|.+... +.++|++.|+++..+
T Consensus 115 ~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~-~~~~Il~t~~~~~l~ 178 (354)
T 1sxj_E 115 EVAQMEQVDFQDSKDGLAHRYKCVIINEANS-LTKDAQAALRRTMEKYSK-NIRLIMVCDSMSPII 178 (354)
T ss_dssp HHTTTTC------------CCEEEEEECTTS-SCHHHHHHHHHHHHHSTT-TEEEEEEESCSCSSC
T ss_pred HHHHhccccccccccccCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcC-CCEEEEEeCCHHHHH
Confidence 000 00 1122 2333 887 999999999999988643 679999999987543
No 316
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.14 E-value=0.012 Score=53.37 Aligned_cols=32 Identities=19% Similarity=0.233 Sum_probs=26.3
Q ss_pred ceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHH
Q psy8953 245 LHGISGEFKAGQLTAIMGPSGAGKSTLLNILA 276 (286)
Q Consensus 245 l~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~ 276 (286)
|+.+---+.+|+++.|.|+.|+|||||+..++
T Consensus 187 LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia 218 (444)
T 3bgw_A 187 LDRMTYGYKRRNFVLIAARPSMGKTAFALKQA 218 (444)
T ss_dssp HHHHHSSBCSSCEEEEEECSSSSHHHHHHHHH
T ss_pred HHhhcCCCCCCcEEEEEeCCCCChHHHHHHHH
Confidence 44333358999999999999999999998776
No 317
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=95.13 E-value=0.019 Score=49.28 Aligned_cols=33 Identities=33% Similarity=0.330 Sum_probs=27.2
Q ss_pred ccceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHH
Q psy8953 243 EILHGISGEFKAGQLTAIMGPSGAGKSTLLNILA 276 (286)
Q Consensus 243 ~il~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~ 276 (286)
..+|..-+.+ .|.-+.|.|++|+|||||+..|.
T Consensus 136 ~~~H~~~v~~-~g~gvli~G~sG~GKStlal~l~ 168 (312)
T 1knx_A 136 AQIHGVLLEV-FGVGVLLTGRSGIGKSECALDLI 168 (312)
T ss_dssp EEEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHH
T ss_pred ceeEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHH
Confidence 3677766666 48889999999999999998764
No 318
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.11 E-value=0.0099 Score=51.40 Aligned_cols=26 Identities=31% Similarity=0.406 Sum_probs=22.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCC
Q psy8953 254 AGQLTAIMGPSGAGKSTLLNILAGLT 279 (286)
Q Consensus 254 ~Ge~~aivG~NGsGKSTLl~~l~GL~ 279 (286)
+...+.|.||.|+|||||++.++.-+
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCceEEEECCCCccHHHHHHHHHHHc
Confidence 45678999999999999999999754
No 319
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.06 E-value=0.012 Score=49.28 Aligned_cols=24 Identities=25% Similarity=0.277 Sum_probs=20.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHcC
Q psy8953 255 GQLTAIMGPSGAGKSTLLNILAGL 278 (286)
Q Consensus 255 Ge~~aivG~NGsGKSTLl~~l~GL 278 (286)
...+.|.||.|+|||||++.++..
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH
Confidence 346789999999999999999864
No 320
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.02 E-value=0.011 Score=50.28 Aligned_cols=26 Identities=23% Similarity=0.257 Sum_probs=21.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHHcCCCC
Q psy8953 256 QLTAIMGPSGAGKSTLLNILAGLTYL 281 (286)
Q Consensus 256 e~~aivG~NGsGKSTLl~~l~GL~~~ 281 (286)
..+.|.||.|+|||+|++.++.-+..
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~l~~ 62 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRKMGI 62 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 35788899999999999999965443
No 321
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=95.01 E-value=0.0075 Score=52.11 Aligned_cols=30 Identities=27% Similarity=0.263 Sum_probs=25.1
Q ss_pred EeCCCEEEEEcCCCCcHHHHHHHHHcCCCC
Q psy8953 252 FKAGQLTAIMGPSGAGKSTLLNILAGLTYL 281 (286)
Q Consensus 252 i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~ 281 (286)
+..|..+.|.||.|+|||||++.++..+..
T Consensus 43 l~~~~~vll~G~pGtGKT~la~~la~~~~~ 72 (331)
T 2r44_A 43 ICTGGHILLEGVPGLAKTLSVNTLAKTMDL 72 (331)
T ss_dssp HHHTCCEEEESCCCHHHHHHHHHHHHHTTC
T ss_pred HHcCCeEEEECCCCCcHHHHHHHHHHHhCC
Confidence 334778999999999999999999986543
No 322
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.00 E-value=0.013 Score=53.94 Aligned_cols=22 Identities=32% Similarity=0.474 Sum_probs=19.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHH
Q psy8953 255 GQLTAIMGPSGAGKSTLLNILA 276 (286)
Q Consensus 255 Ge~~aivG~NGsGKSTLl~~l~ 276 (286)
..+++|+|++||||||++..|+
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA 122 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLA 122 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4589999999999999999998
No 323
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.00 E-value=0.016 Score=49.78 Aligned_cols=23 Identities=35% Similarity=0.382 Sum_probs=21.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHc
Q psy8953 255 GQLTAIMGPSGAGKSTLLNILAG 277 (286)
Q Consensus 255 Ge~~aivG~NGsGKSTLl~~l~G 277 (286)
+..+.|.||.|+|||+|++.|+.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 67899999999999999999875
No 324
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=94.99 E-value=0.014 Score=49.63 Aligned_cols=26 Identities=31% Similarity=0.535 Sum_probs=22.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHcCCC
Q psy8953 255 GQLTAIMGPSGAGKSTLLNILAGLTY 280 (286)
Q Consensus 255 Ge~~aivG~NGsGKSTLl~~l~GL~~ 280 (286)
+..+.|.||.|+|||||++.++..+.
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhC
Confidence 45688999999999999999987543
No 325
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=94.98 E-value=0.01 Score=53.86 Aligned_cols=26 Identities=31% Similarity=0.579 Sum_probs=22.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 257 LTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 257 ~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
.+.|.||.|+|||||++.|+......
T Consensus 52 ~vLL~GppGtGKTtlAr~ia~~~~~~ 77 (447)
T 3pvs_A 52 SMILWGPPGTGKTTLAEVIARYANAD 77 (447)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTCE
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 48999999999999999999876543
No 326
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=94.94 E-value=0.012 Score=54.06 Aligned_cols=27 Identities=15% Similarity=0.036 Sum_probs=23.8
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHHcCC
Q psy8953 253 KAGQLTAIMGPSGAGKSTLLNILAGLT 279 (286)
Q Consensus 253 ~~Ge~~aivG~NGsGKSTLl~~l~GL~ 279 (286)
+.|-++.|+|..||||||+.+.|+.-+
T Consensus 393 ~~~~~I~l~GlsGsGKSTIa~~La~~L 419 (511)
T 1g8f_A 393 KQGFSIVLGNSLTVSREQLSIALLSTF 419 (511)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHH
T ss_pred ccceEEEecccCCCCHHHHHHHHHHHH
Confidence 567889999999999999999998654
No 327
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=94.91 E-value=0.015 Score=54.84 Aligned_cols=25 Identities=36% Similarity=0.403 Sum_probs=22.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHcC
Q psy8953 254 AGQLTAIMGPSGAGKSTLLNILAGL 278 (286)
Q Consensus 254 ~Ge~~aivG~NGsGKSTLl~~l~GL 278 (286)
+|.++.|+|..||||||+++.|+-.
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~ 75 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEY 75 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999753
No 328
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=94.91 E-value=0.011 Score=51.05 Aligned_cols=29 Identities=28% Similarity=0.328 Sum_probs=23.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Q psy8953 254 AGQLTAIMGPSGAGKSTLLNILAGLTYLN 282 (286)
Q Consensus 254 ~Ge~~aivG~NGsGKSTLl~~l~GL~~~~ 282 (286)
+...+.|.||.|+|||+|++.++.-...+
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~~~~~ 78 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATEANST 78 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHHHTCE
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHCCC
Confidence 34568999999999999999998754433
No 329
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=94.89 E-value=0.011 Score=51.04 Aligned_cols=25 Identities=36% Similarity=0.460 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCC
Q psy8953 257 LTAIMGPSGAGKSTLLNILAGLTYL 281 (286)
Q Consensus 257 ~~aivG~NGsGKSTLl~~l~GL~~~ 281 (286)
.+.|.||.|+|||||++.++.....
T Consensus 57 ~vll~G~~GtGKT~la~~ia~~~~~ 81 (338)
T 3pfi_A 57 HILFSGPAGLGKTTLANIISYEMSA 81 (338)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred eEEEECcCCCCHHHHHHHHHHHhCC
Confidence 5799999999999999999865543
No 330
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=94.88 E-value=0.016 Score=50.63 Aligned_cols=27 Identities=30% Similarity=0.370 Sum_probs=23.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCCC
Q psy8953 254 AGQLTAIMGPSGAGKSTLLNILAGLTY 280 (286)
Q Consensus 254 ~Ge~~aivG~NGsGKSTLl~~l~GL~~ 280 (286)
+|..+.|.||.|+|||||++.++..+.
T Consensus 69 ~~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 69 AGRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 467899999999999999999986554
No 331
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=94.86 E-value=0.012 Score=51.81 Aligned_cols=27 Identities=26% Similarity=0.455 Sum_probs=22.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHcCCCC
Q psy8953 255 GQLTAIMGPSGAGKSTLLNILAGLTYL 281 (286)
Q Consensus 255 Ge~~aivG~NGsGKSTLl~~l~GL~~~ 281 (286)
...+.|.||.|+|||||++.|+..+..
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~~ 98 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLDI 98 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCC
Confidence 446899999999999999999976543
No 332
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=94.81 E-value=0.014 Score=54.35 Aligned_cols=23 Identities=17% Similarity=0.398 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q psy8953 257 LTAIMGPSGAGKSTLLNILAGLT 279 (286)
Q Consensus 257 ~~aivG~NGsGKSTLl~~l~GL~ 279 (286)
.++|+|..|+|||||++.|.|-.
T Consensus 67 ~V~vvG~~n~GKSTLIN~Llg~~ 89 (550)
T 2qpt_A 67 MVLVAGQYSTGKTSFIQYLLEQE 89 (550)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 78999999999999999999854
No 333
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=93.81 E-value=0.005 Score=49.08 Aligned_cols=21 Identities=24% Similarity=0.363 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy8953 257 LTAIMGPSGAGKSTLLNILAG 277 (286)
Q Consensus 257 ~~aivG~NGsGKSTLl~~l~G 277 (286)
-++|+|+.|+|||||++.+++
T Consensus 32 ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 32 KCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 479999999999999988764
No 334
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.78 E-value=0.019 Score=50.41 Aligned_cols=24 Identities=17% Similarity=0.242 Sum_probs=21.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHcC
Q psy8953 255 GQLTAIMGPSGAGKSTLLNILAGL 278 (286)
Q Consensus 255 Ge~~aivG~NGsGKSTLl~~l~GL 278 (286)
+..+.|.||.|+|||||++.++.-
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~ 68 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNE 68 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 558999999999999999999854
No 335
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=94.76 E-value=0.013 Score=51.51 Aligned_cols=30 Identities=23% Similarity=0.303 Sum_probs=23.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHcCCCCCCC
Q psy8953 255 GQLTAIMGPSGAGKSTLLNILAGLTYLNFS 284 (286)
Q Consensus 255 Ge~~aivG~NGsGKSTLl~~l~GL~~~~~~ 284 (286)
---+.|+|..||||||++|-|-=+..++|+
T Consensus 33 ~~killlG~~~SGKST~~kq~~i~~~~~~~ 62 (362)
T 1zcb_A 33 LVKILLLGAGESGKSTFLKQMRIIHGQDFD 62 (362)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHSCCCC
T ss_pred ccEEEEECCCCCcHHHHHHHHHHHhCCCCC
Confidence 346799999999999999998644455543
No 336
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=94.73 E-value=0.016 Score=49.11 Aligned_cols=24 Identities=42% Similarity=0.477 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q psy8953 257 LTAIMGPSGAGKSTLLNILAGLTY 280 (286)
Q Consensus 257 ~~aivG~NGsGKSTLl~~l~GL~~ 280 (286)
.++|+|..|+|||||++.|.|-..
T Consensus 122 ~v~~vG~~nvGKSsliN~l~~~~~ 145 (282)
T 1puj_A 122 RALIIGIPNVGKSTLINRLAKKNI 145 (282)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSCC
T ss_pred eEEEEecCCCchHHHHHHHhcCce
Confidence 579999999999999999998543
No 337
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=94.73 E-value=0.017 Score=54.03 Aligned_cols=26 Identities=19% Similarity=0.216 Sum_probs=22.5
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHHcC
Q psy8953 253 KAGQLTAIMGPSGAGKSTLLNILAGL 278 (286)
Q Consensus 253 ~~Ge~~aivG~NGsGKSTLl~~l~GL 278 (286)
+.|-++.|+|..||||||+++.|+-.
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~ 419 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVT 419 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHH
Confidence 35678999999999999999999754
No 338
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=94.70 E-value=0.021 Score=49.27 Aligned_cols=23 Identities=35% Similarity=0.462 Sum_probs=20.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHc
Q psy8953 255 GQLTAIMGPSGAGKSTLLNILAG 277 (286)
Q Consensus 255 Ge~~aivG~NGsGKSTLl~~l~G 277 (286)
|.++.|.|+-|+|||||++.++.
T Consensus 31 ~~~v~i~G~~G~GKT~Ll~~~~~ 53 (350)
T 2qen_A 31 YPLTLLLGIRRVGKSSLLRAFLN 53 (350)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCcCCHHHHHHHHHH
Confidence 57999999999999999998864
No 339
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=94.69 E-value=0.015 Score=52.95 Aligned_cols=22 Identities=41% Similarity=0.521 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy8953 257 LTAIMGPSGAGKSTLLNILAGL 278 (286)
Q Consensus 257 ~~aivG~NGsGKSTLl~~l~GL 278 (286)
.++|+|+.|+|||||++.|+|-
T Consensus 226 kV~ivG~~nvGKSSLln~L~~~ 247 (462)
T 3geh_A 226 KVAIVGRPNVGKSSLLNAWSQS 247 (462)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHhCC
Confidence 4899999999999999999874
No 340
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=94.68 E-value=0.013 Score=53.82 Aligned_cols=26 Identities=23% Similarity=0.275 Sum_probs=23.9
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHH
Q psy8953 251 EFKAGQLTAIMGPSGAGKSTLLNILA 276 (286)
Q Consensus 251 ~i~~Ge~~aivG~NGsGKSTLl~~l~ 276 (286)
-+.+|+++.|.|+.|+|||||+..++
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a 263 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQA 263 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHH
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHH
Confidence 48999999999999999999988775
No 341
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=94.65 E-value=0.018 Score=47.97 Aligned_cols=26 Identities=27% Similarity=0.377 Sum_probs=22.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHcCCC
Q psy8953 255 GQLTAIMGPSGAGKSTLLNILAGLTY 280 (286)
Q Consensus 255 Ge~~aivG~NGsGKSTLl~~l~GL~~ 280 (286)
+..+.|.|+.|+|||+|++.|+....
T Consensus 29 ~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp CSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred CCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 45789999999999999999987653
No 342
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=94.64 E-value=0.00053 Score=63.34 Aligned_cols=124 Identities=6% Similarity=-0.010 Sum_probs=76.8
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeE--------------------EecCcc--cCCCCCHHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCY--------------------IQQDDA--LRPKLTVTEAM 57 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~--------------------v~Q~~~--~~~~~tV~e~l 57 (286)
|||||++ +|+.+. .+|.|.|.|.+--.. . -...+++ +.|+|. ++..++..|.+
T Consensus 273 KTTlL~aL~~~i~~-~~giitied~~E~~~--~-~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~iivgEir~~E~~ 348 (511)
T 2oap_1 273 KTTTLNAIMMFIPP-DAKVVSIEDTREIKL--Y-HENWIAEVTRTGMGEGEIDMYDLLRAALRQRPDYIIVGEVRGREAQ 348 (511)
T ss_dssp HHHHHHHHGGGSCT-TCCEEEEESSCCCCC--C-CSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCSEEEESCCCSTHHH
T ss_pred HHHHHHHHHhhCCC-CCCEEEEcCcccccC--C-CCCeEEEEeecccccCCcCHHHHHHHhhccCCCeEEeCCcCHHHHH
Confidence 8999999 997654 578999988652111 0 0122222 445653 45778888876
Q ss_pred HHHHhc--CCC-----CCCCHHHHHHHHhh----------hh-------hhcccCCccc-------cCCCcchHHHHHHH
Q psy8953 58 MIASHL--KLG-----FKVSTQEKKDQVSL----------EL-------WNNFCKKKKK-------KKRGLDSSSCSQCV 106 (286)
Q Consensus 58 ~f~~~~--~~~-----~~~~~~~~~~~v~l----------~~-------~~~~~gG~kq-------ptsgLD~~~~~~~~ 106 (286)
.+...+ +.. ..-+.++..+|+.. .. ...++||++| =++||||.+...++
T Consensus 349 ~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~G~~~R~~~ai~E~~GlDp~~~~~~~ 428 (511)
T 2oap_1 349 TLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRGNTRLRRTKEVNEILGIDPVDKNLLV 428 (511)
T ss_dssp HHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESSSCEEEEEEEEEEEEECCSSSSCCEE
T ss_pred HHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeCCCceEEEEEEEEEcCcccCCCeEEE
Confidence 553332 211 01245565565541 00 1235688876 36799998888888
Q ss_pred HHHHHHHhCCCEEEE--EEcCCCH
Q psy8953 107 SLLANLAKQGRTVVA--TIHTPSA 128 (286)
Q Consensus 107 ~~l~~l~~~g~tii~--~~h~~~~ 128 (286)
+.|.++...|.|+++ ++|..++
T Consensus 429 ~~l~~~~~~~~tii~~~~sH~l~e 452 (511)
T 2oap_1 429 NQFVKWDPKEDKHIEVSMPKKLEK 452 (511)
T ss_dssp EEEEEEETTTTEEEECSCCTHHHH
T ss_pred EEeEEEcccCCEEEEcccHHHHHH
Confidence 888878777889885 7788753
No 343
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=94.59 E-value=0.018 Score=46.41 Aligned_cols=28 Identities=18% Similarity=0.180 Sum_probs=23.1
Q ss_pred EeCCCEEEEEcCCCCcHHHHHHHHHcCC
Q psy8953 252 FKAGQLTAIMGPSGAGKSTLLNILAGLT 279 (286)
Q Consensus 252 i~~Ge~~aivG~NGsGKSTLl~~l~GL~ 279 (286)
+++.-.+.|.||.|+||||++.+|+..+
T Consensus 55 iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 55 TPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 4455578999999999999999888654
No 344
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=94.53 E-value=0.00059 Score=61.34 Aligned_cols=53 Identities=17% Similarity=0.206 Sum_probs=33.1
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASH 62 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~ 62 (286)
||||+|+ +|.. ++|.++.........+.++||+|++.+++.+||.|++.|+..
T Consensus 55 KSTLln~L~G~~---------l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~ 108 (427)
T 2qag_B 55 KSTLMDTLFNTK---------FEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQ 108 (427)
T ss_dssp SHHHHHHHHTSC---------C-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-
T ss_pred HHHHHHHHhCcc---------ccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhc
Confidence 8999999 9973 233333211112334689999999988889999999888653
No 345
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=94.53 E-value=0.022 Score=52.67 Aligned_cols=24 Identities=17% Similarity=0.290 Sum_probs=20.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHcC
Q psy8953 255 GQLTAIMGPSGAGKSTLLNILAGL 278 (286)
Q Consensus 255 Ge~~aivG~NGsGKSTLl~~l~GL 278 (286)
..++.++|..||||||+++.|+.-
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~ 58 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRY 58 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999999743
No 346
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=94.50 E-value=0.013 Score=51.39 Aligned_cols=28 Identities=29% Similarity=0.334 Sum_probs=23.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCCCC
Q psy8953 254 AGQLTAIMGPSGAGKSTLLNILAGLTYL 281 (286)
Q Consensus 254 ~Ge~~aivG~NGsGKSTLl~~l~GL~~~ 281 (286)
+..-+.|.||.|+|||||++.++.-+..
T Consensus 83 ~~~~iLL~GppGtGKT~la~ala~~~~~ 110 (355)
T 2qp9_X 83 PTSGILLYGPPGTGKSYLAKAVATEANS 110 (355)
T ss_dssp CCCCEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCC
Confidence 3445899999999999999999875543
No 347
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=94.49 E-value=0.0033 Score=49.99 Aligned_cols=21 Identities=43% Similarity=0.542 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy8953 257 LTAIMGPSGAGKSTLLNILAG 277 (286)
Q Consensus 257 ~~aivG~NGsGKSTLl~~l~G 277 (286)
-++|+|+.|+|||||++.|++
T Consensus 35 ki~vvG~~~~GKSsli~~l~~ 55 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLLRFAD 55 (199)
T ss_dssp EEEEECCTTSCCTTTTTSSBC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 369999999999999987765
No 348
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=94.46 E-value=0.013 Score=51.28 Aligned_cols=24 Identities=33% Similarity=0.582 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q psy8953 257 LTAIMGPSGAGKSTLLNILAGLTY 280 (286)
Q Consensus 257 ~~aivG~NGsGKSTLl~~l~GL~~ 280 (286)
.++|+|..|+|||||++.|+|--.
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~~ 56 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRDF 56 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSCC
T ss_pred eEEEECCCCCCHHHHHHHHhCCCc
Confidence 679999999999999999999643
No 349
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=94.44 E-value=0.022 Score=49.67 Aligned_cols=33 Identities=30% Similarity=0.332 Sum_probs=26.6
Q ss_pred eeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcC
Q psy8953 246 HGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278 (286)
Q Consensus 246 ~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL 278 (286)
+.+.++++----++|+|..+||||||++.|++-
T Consensus 149 ~~~~leLk~la~V~lvG~~nvGKSTLln~L~~~ 181 (342)
T 1lnz_A 149 RYIVLELKVLADVGLVGFPSVGKSTLLSVVSSA 181 (342)
T ss_dssp EEEEEEEECCCCEEEESSTTSSHHHHHHHSEEE
T ss_pred hhHhhhhhhcCeeeeeCCCCCCHHHHHHHHHcC
Confidence 455666665556899999999999999998764
No 350
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.34 E-value=0.024 Score=51.07 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=20.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHc
Q psy8953 254 AGQLTAIMGPSGAGKSTLLNILAG 277 (286)
Q Consensus 254 ~Ge~~aivG~NGsGKSTLl~~l~G 277 (286)
+..+++++|++|+||||++-.|+.
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~ 122 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGK 122 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999988883
No 351
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=94.28 E-value=0.025 Score=51.47 Aligned_cols=24 Identities=21% Similarity=0.321 Sum_probs=20.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHcC
Q psy8953 255 GQLTAIMGPSGAGKSTLLNILAGL 278 (286)
Q Consensus 255 Ge~~aivG~NGsGKSTLl~~l~GL 278 (286)
...+.++|..||||||+++.|+.-
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~ 62 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRY 62 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 347899999999999999999853
No 352
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=94.27 E-value=0.023 Score=52.75 Aligned_cols=29 Identities=24% Similarity=0.337 Sum_probs=24.9
Q ss_pred eeeEEeCCCEEEEEcCCCCcHHHHHHHHH
Q psy8953 248 ISGEFKAGQLTAIMGPSGAGKSTLLNILA 276 (286)
Q Consensus 248 ~~l~i~~Ge~~aivG~NGsGKSTLl~~l~ 276 (286)
+.+++.++-++.|.|.+|||||++++.|.
T Consensus 207 v~~DL~k~pHlLIaG~TGSGKS~~L~tlI 235 (574)
T 2iut_A 207 IITDLAKMPHLLVAGTTGSGKSVGVNAML 235 (574)
T ss_dssp EEEEGGGSCCEEEECCTTSSHHHHHHHHH
T ss_pred EEEEhhhCCeeEEECCCCCCHHHHHHHHH
Confidence 45667778899999999999999999854
No 353
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=94.26 E-value=0.026 Score=52.45 Aligned_cols=25 Identities=44% Similarity=0.474 Sum_probs=22.2
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHHc
Q psy8953 253 KAGQLTAIMGPSGAGKSTLLNILAG 277 (286)
Q Consensus 253 ~~Ge~~aivG~NGsGKSTLl~~l~G 277 (286)
+.|.++.|+|..||||||+++.|+.
T Consensus 370 ~~~~~I~l~G~~GsGKSTia~~La~ 394 (546)
T 2gks_A 370 KQGFCVWLTGLPCAGKSTIAEILAT 394 (546)
T ss_dssp GCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccceEEEccCCCCCCHHHHHHHHHH
Confidence 3477899999999999999999875
No 354
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=94.25 E-value=0.024 Score=50.02 Aligned_cols=25 Identities=28% Similarity=0.384 Sum_probs=22.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHcC
Q psy8953 254 AGQLTAIMGPSGAGKSTLLNILAGL 278 (286)
Q Consensus 254 ~Ge~~aivG~NGsGKSTLl~~l~GL 278 (286)
++..++++|..|+|||||++.|.|-
T Consensus 161 ~~~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 161 EGGDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp TTSCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEcCCCCchHHHHHHHHhh
Confidence 4567899999999999999999875
No 355
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=94.19 E-value=0.025 Score=56.39 Aligned_cols=59 Identities=15% Similarity=0.130 Sum_probs=43.4
Q ss_pred cCCCcchHHH-HHHHHHHHHHHhC-CCEEEEEEcCCCHHHHHHhhhHhhhcCCeee--cccChhc
Q psy8953 93 KKRGLDSSSC-SQCVSLLANLAKQ-GRTVVATIHTPSALLFEKFDSLYALAKGHCI--YRGSISR 153 (286)
Q Consensus 93 ptsgLD~~~~-~~~~~~l~~l~~~-g~tii~~~h~~~~~~~~~~d~v~~l~~G~i~--~~g~~~~ 153 (286)
|++|+|+... ..++.+|+.|++. |.++|+++|..+ .....+|++.++ +|++. +.|++++
T Consensus 877 p~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~e-l~~~~~d~~~v~-~g~~~~~~~~~~~~ 939 (1022)
T 2o8b_B 877 LGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHS-LVEDYSQNVAVR-LGHMACMVENECED 939 (1022)
T ss_dssp TTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHH-HHHHTSSCSSEE-EEEEEEC-------
T ss_pred CCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHH-HHHHhCCcceee-cCeEEEEEecCccc
Confidence 9999999875 5579999999886 999999999985 455668888776 48887 4555433
No 356
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.15 E-value=0.02 Score=51.53 Aligned_cols=27 Identities=33% Similarity=0.540 Sum_probs=23.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCC
Q psy8953 257 LTAIMGPSGAGKSTLLNILAGLTYLNF 283 (286)
Q Consensus 257 ~~aivG~NGsGKSTLl~~l~GL~~~~~ 283 (286)
=+.+.||.|+|||+|++.+|+-+..+|
T Consensus 208 GiLL~GPPGtGKT~lakAiA~~~~~~~ 234 (428)
T 4b4t_K 208 GVLLYGPPGTGKTMLVKAVANSTKAAF 234 (428)
T ss_dssp EEEEESCTTTTHHHHHHHHHHHHTCEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence 489999999999999999998665554
No 357
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=94.14 E-value=0.024 Score=52.09 Aligned_cols=36 Identities=19% Similarity=0.145 Sum_probs=28.3
Q ss_pred ceeeeeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCC
Q psy8953 245 LHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTY 280 (286)
Q Consensus 245 l~~~~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~ 280 (286)
++-+-..+..|..+.|.||.|+|||+|++.|+....
T Consensus 31 i~~l~~al~~~~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 31 IRLCLLAALSGESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp HHHHHHHHHHTCEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred HHHHHHHHhcCCeeEeecCchHHHHHHHHHHHHHHh
Confidence 333344455678999999999999999999998663
No 358
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=94.10 E-value=0.029 Score=51.14 Aligned_cols=26 Identities=23% Similarity=0.373 Sum_probs=22.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCC
Q psy8953 254 AGQLTAIMGPSGAGKSTLLNILAGLT 279 (286)
Q Consensus 254 ~Ge~~aivG~NGsGKSTLl~~l~GL~ 279 (286)
....+.|+||+|+|||||++.|+..+
T Consensus 200 ~~~~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 200 TKNNPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp SSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 44567999999999999999998754
No 359
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=94.08 E-value=0.019 Score=49.14 Aligned_cols=24 Identities=33% Similarity=0.545 Sum_probs=20.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHcC
Q psy8953 255 GQLTAIMGPSGAGKSTLLNILAGL 278 (286)
Q Consensus 255 Ge~~aivG~NGsGKSTLl~~l~GL 278 (286)
...+.|.|+.|+|||||++.++..
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~~ 61 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAHE 61 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999999999753
No 360
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=94.06 E-value=0.0018 Score=56.35 Aligned_cols=114 Identities=12% Similarity=0.051 Sum_probs=68.4
Q ss_pred Cchhhhh-cCCCC---CCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcC-CCCCCCHHHHH
Q psy8953 1 MSIELNV-QSIRL---TGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLK-LGFKVSTQEKK 75 (286)
Q Consensus 1 ~stll~~-~g~~~---~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~-~~~~~~~~~~~ 75 (286)
||||+++ ++... ...+|++..++.++........+..++|+.|.+.+.+ ++.|.+....+.. ........+..
T Consensus 64 KTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iDE~~~l~~--~~~e~L~~~~~~~~~~i~~~~~~~~ 141 (334)
T 1in4_A 64 KTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEIHRLNK--AVEELLYSAIEDFQIDIMIGKGPSA 141 (334)
T ss_dssp HHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEETGGGCCH--HHHHHHHHHHHTSCCCC--------
T ss_pred HHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEcchhhcCH--HHHHHHHHHHHhcccceeeccCccc
Confidence 7999999 88432 1356777766655432100112467899998776655 8899987766532 11000111112
Q ss_pred HHHh-------hh----hhhcccCCccccC---CCcchHHHHHHHHHHHHHHhC-C
Q psy8953 76 DQVS-------LE----LWNNFCKKKKKKK---RGLDSSSCSQCVSLLANLAKQ-G 116 (286)
Q Consensus 76 ~~v~-------l~----~~~~~~gG~kqpt---sgLD~~~~~~~~~~l~~l~~~-g 116 (286)
+++. +. ..+.+++|+++-. .+||+.+..++.++|++.++. +
T Consensus 142 ~~i~~~l~~~~li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~ 197 (334)
T 1in4_A 142 KSIRIDIQPFTLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMD 197 (334)
T ss_dssp -------CCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTT
T ss_pred ccccccCCCeEEEEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcC
Confidence 2222 11 3356789999843 689999999999999998763 5
No 361
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=94.06 E-value=0.026 Score=49.98 Aligned_cols=28 Identities=25% Similarity=0.418 Sum_probs=23.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCCCC
Q psy8953 254 AGQLTAIMGPSGAGKSTLLNILAGLTYL 281 (286)
Q Consensus 254 ~Ge~~aivG~NGsGKSTLl~~l~GL~~~ 281 (286)
++..+.|.||.|+|||+|++.++.-...
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~~~~ 174 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAESNA 174 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHHTTC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhhcC
Confidence 4568999999999999999999865443
No 362
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.05 E-value=0.018 Score=51.28 Aligned_cols=33 Identities=30% Similarity=0.422 Sum_probs=26.3
Q ss_pred eeEEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCC
Q psy8953 249 SGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLNF 283 (286)
Q Consensus 249 ~l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~~ 283 (286)
.+..++| +.+.||.|+|||+|+|++|+-...+|
T Consensus 178 gi~~prG--vLL~GPPGTGKTllAkAiA~e~~~~f 210 (405)
T 4b4t_J 178 GIAQPKG--VILYGPPGTGKTLLARAVAHHTDCKF 210 (405)
T ss_dssp TCCCCCC--EEEESCSSSSHHHHHHHHHHHHTCEE
T ss_pred CCCCCCc--eEEeCCCCCCHHHHHHHHHHhhCCCc
Confidence 3344455 78999999999999999998766655
No 363
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=94.00 E-value=0.028 Score=50.88 Aligned_cols=26 Identities=31% Similarity=0.406 Sum_probs=22.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCC
Q psy8953 254 AGQLTAIMGPSGAGKSTLLNILAGLT 279 (286)
Q Consensus 254 ~Ge~~aivG~NGsGKSTLl~~l~GL~ 279 (286)
+...+.|.||.|+|||||++.++..+
T Consensus 166 ~~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHc
Confidence 44678999999999999999999755
No 364
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=93.99 E-value=0.029 Score=50.55 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q psy8953 257 LTAIMGPSGAGKSTLLNILAGLTY 280 (286)
Q Consensus 257 ~~aivG~NGsGKSTLl~~l~GL~~ 280 (286)
-++|+|..|+|||||++.|+|-.+
T Consensus 177 ki~lvG~~nvGKSSLin~l~~~~~ 200 (436)
T 2hjg_A 177 QFCLIGRPNVGKSSLVNAMLGEER 200 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTT
T ss_pred EEEEEcCCCCCHHHHHHHHhCCCc
Confidence 469999999999999999998543
No 365
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=93.95 E-value=0.035 Score=49.07 Aligned_cols=28 Identities=36% Similarity=0.531 Sum_probs=25.5
Q ss_pred eEEeCCCEEEEEcCCCCcHHHHHHHHHc
Q psy8953 250 GEFKAGQLTAIMGPSGAGKSTLLNILAG 277 (286)
Q Consensus 250 l~i~~Ge~~aivG~NGsGKSTLl~~l~G 277 (286)
+.+-+|+-.+|+|+.|+|||||+..|+.
T Consensus 170 ~PigrGQR~lIfg~~g~GKT~Ll~~Ia~ 197 (427)
T 3l0o_A 170 APIGKGQRGMIVAPPKAGKTTILKEIAN 197 (427)
T ss_dssp SCCBTTCEEEEEECTTCCHHHHHHHHHH
T ss_pred ccccCCceEEEecCCCCChhHHHHHHHH
Confidence 5788999999999999999999988875
No 366
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=93.94 E-value=0.025 Score=49.81 Aligned_cols=25 Identities=28% Similarity=0.420 Sum_probs=22.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHcC
Q psy8953 254 AGQLTAIMGPSGAGKSTLLNILAGL 278 (286)
Q Consensus 254 ~Ge~~aivG~NGsGKSTLl~~l~GL 278 (286)
++..++++|..|+|||||++.|.|-
T Consensus 159 ~~~~i~~vG~~nvGKStliN~L~~~ 183 (368)
T 3h2y_A 159 GGKDVYVVGCTNVGKSTFINRMIKE 183 (368)
T ss_dssp TTSCEEEEEBTTSSHHHHHHHHHHH
T ss_pred ccceEEEecCCCCChhHHHHHHHhh
Confidence 5677899999999999999999874
No 367
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.93 E-value=0.023 Score=51.18 Aligned_cols=29 Identities=31% Similarity=0.460 Sum_probs=24.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHcCCCCCC
Q psy8953 255 GQLTAIMGPSGAGKSTLLNILAGLTYLNF 283 (286)
Q Consensus 255 Ge~~aivG~NGsGKSTLl~~l~GL~~~~~ 283 (286)
-.=+.+.||.|+|||+|++++|+-...+|
T Consensus 215 prGvLL~GPPGtGKTllAkAiA~e~~~~~ 243 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKAVAATIGANF 243 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHTCEE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhCCCE
Confidence 34478999999999999999998766554
No 368
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=93.92 E-value=0.0025 Score=57.26 Aligned_cols=91 Identities=13% Similarity=-0.043 Sum_probs=54.7
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCch----hhhcccceeeEEe---------cCccc--CCC----CCHHHHHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSA----CIEQFLKLSCYIQ---------QDDAL--RPK----LTVTEAMMIA 60 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~----~~~~~~~~~g~v~---------Q~~~~--~~~----~tV~e~l~f~ 60 (286)
|||||++ +|+... .+|+|.++|.++... ....+.+.+||+| |+|.. +.. .|+++.+.++
T Consensus 180 KTTlL~allg~l~~-~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~ 258 (418)
T 1p9r_A 180 KSTTLYAGLQELNS-SERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQAS 258 (418)
T ss_dssp HHHHHHHHHHHHCC-TTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCC-CCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHH
Confidence 8999999 986543 379999999877420 0112344567766 99864 344 6899999887
Q ss_pred HhcCCC----CCCCHHHHHHHHh---hh---hhhcccCCccc
Q psy8953 61 SHLKLG----FKVSTQEKKDQVS---LE---LWNNFCKKKKK 92 (286)
Q Consensus 61 ~~~~~~----~~~~~~~~~~~v~---l~---~~~~~~gG~kq 92 (286)
..-++. ...+..+...++. +. ....+|||++|
T Consensus 259 ~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~~~~~~LSgg~~Q 300 (418)
T 1p9r_A 259 LTGHLVMSTLHTNTAVGAVTRLRDMGIEPFLISSSLLGVLAQ 300 (418)
T ss_dssp HTTCEEEEEECCSSSHHHHHHHHHHTCCHHHHHHHEEEEEEE
T ss_pred HhCCCcccccchhhHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 531110 0112233333433 21 45668899888
No 369
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=93.88 E-value=0.038 Score=57.64 Aligned_cols=27 Identities=30% Similarity=0.539 Sum_probs=25.0
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHHc
Q psy8953 251 EFKAGQLTAIMGPSGAGKSTLLNILAG 277 (286)
Q Consensus 251 ~i~~Ge~~aivG~NGsGKSTLl~~l~G 277 (286)
-+++|+++.|.|++|+|||||+..++.
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~ 754 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIA 754 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHH
Confidence 389999999999999999999999875
No 370
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=93.86 E-value=0.031 Score=53.54 Aligned_cols=25 Identities=36% Similarity=0.389 Sum_probs=21.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHcCC
Q psy8953 255 GQLTAIMGPSGAGKSTLLNILAGLT 279 (286)
Q Consensus 255 Ge~~aivG~NGsGKSTLl~~l~GL~ 279 (286)
+=.++|+|+.|+|||||++.|.|--
T Consensus 69 ~~~V~VvG~~naGKSSLlNaLlg~~ 93 (695)
T 2j69_A 69 VFRLLVLGDMKRGKSTFLNALIGEN 93 (695)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3358999999999999999999864
No 371
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=93.85 E-value=0.022 Score=49.40 Aligned_cols=21 Identities=33% Similarity=0.384 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy8953 257 LTAIMGPSGAGKSTLLNILAG 277 (286)
Q Consensus 257 ~~aivG~NGsGKSTLl~~l~G 277 (286)
-++|+|..|+|||||++.+.+
T Consensus 167 kI~ivG~~~vGKSsLl~~l~~ 187 (329)
T 3o47_A 167 RILMVGLDAAGKTTILYKLKL 187 (329)
T ss_dssp EEEEEESTTSSHHHHHHHTCS
T ss_pred eEEEECCCCccHHHHHHHHhC
Confidence 479999999999999998865
No 372
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.85 E-value=0.024 Score=50.97 Aligned_cols=29 Identities=31% Similarity=0.444 Sum_probs=24.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHcCCCCCC
Q psy8953 255 GQLTAIMGPSGAGKSTLLNILAGLTYLNF 283 (286)
Q Consensus 255 Ge~~aivG~NGsGKSTLl~~l~GL~~~~~ 283 (286)
-.-+.+.||.|+|||+|++++|+-...+|
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~e~~~~f 243 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAAQTNATF 243 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHTCEE
T ss_pred CCeeEEECcCCCCHHHHHHHHHHHhCCCE
Confidence 34478999999999999999998766554
No 373
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=93.82 E-value=0.032 Score=51.67 Aligned_cols=22 Identities=36% Similarity=0.520 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy8953 257 LTAIMGPSGAGKSTLLNILAGL 278 (286)
Q Consensus 257 ~~aivG~NGsGKSTLl~~l~GL 278 (286)
-++|+|..|+|||||++.++|-
T Consensus 43 kV~lvG~~~vGKSSLl~~l~~~ 64 (535)
T 3dpu_A 43 KVHLIGDGMAGKTSLLKQLIGE 64 (535)
T ss_dssp EEEEESSSCSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3689999999999999999874
No 374
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=93.82 E-value=0.028 Score=52.66 Aligned_cols=23 Identities=48% Similarity=0.600 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q psy8953 257 LTAIMGPSGAGKSTLLNILAGLT 279 (286)
Q Consensus 257 ~~aivG~NGsGKSTLl~~l~GL~ 279 (286)
+++|+|+.++|||||++.|.|-.
T Consensus 40 ~VaivG~pnvGKStLiN~L~g~~ 62 (592)
T 1f5n_A 40 VVAIVGLYRTGKSYLMNKLAGKK 62 (592)
T ss_dssp EEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEEEECCCCCCHHHHHHhHcCCC
Confidence 68999999999999999999864
No 375
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=93.81 E-value=0.021 Score=52.14 Aligned_cols=22 Identities=59% Similarity=0.705 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy8953 257 LTAIMGPSGAGKSTLLNILAGL 278 (286)
Q Consensus 257 ~~aivG~NGsGKSTLl~~l~GL 278 (286)
.++|+|+.|+|||||++.|+|-
T Consensus 235 kV~ivG~~nvGKSSLln~L~~~ 256 (476)
T 3gee_A 235 STVIAGKPNAGKSTLLNTLLGQ 256 (476)
T ss_dssp EEEEECCTTSSHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999875
No 376
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=93.79 E-value=0.037 Score=48.25 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q psy8953 257 LTAIMGPSGAGKSTLLNILAGLT 279 (286)
Q Consensus 257 ~~aivG~NGsGKSTLl~~l~GL~ 279 (286)
.+.|.||.|+|||||++.++.-+
T Consensus 40 ~~ll~G~~G~GKT~la~~la~~l 62 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIARLLAKGL 62 (373)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998643
No 377
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=93.67 E-value=0.037 Score=47.68 Aligned_cols=22 Identities=27% Similarity=0.495 Sum_probs=20.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHHc
Q psy8953 256 QLTAIMGPSGAGKSTLLNILAG 277 (286)
Q Consensus 256 e~~aivG~NGsGKSTLl~~l~G 277 (286)
.++.|.|+-|+|||||++.++.
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~ 52 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGIN 52 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 5999999999999999998864
No 378
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=93.65 E-value=0.031 Score=49.48 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=20.2
Q ss_pred CCCEEEE--EcCCCCcHHHHHHHHHc
Q psy8953 254 AGQLTAI--MGPSGAGKSTLLNILAG 277 (286)
Q Consensus 254 ~Ge~~ai--vG~NGsGKSTLl~~l~G 277 (286)
.+..+.| .|+.|+|||||++.++.
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~ 74 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVK 74 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHH
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHH
Confidence 3557777 99999999999999874
No 379
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=93.62 E-value=0.033 Score=51.06 Aligned_cols=29 Identities=28% Similarity=0.382 Sum_probs=23.9
Q ss_pred EeCCCEEEEEcCCCCcHHHHHHHHHcCCC
Q psy8953 252 FKAGQLTAIMGPSGAGKSTLLNILAGLTY 280 (286)
Q Consensus 252 i~~Ge~~aivG~NGsGKSTLl~~l~GL~~ 280 (286)
+.+..-+.|.||.|+|||+|++.++....
T Consensus 235 ~~~~~~vLL~GppGtGKT~lAraia~~~~ 263 (489)
T 3hu3_A 235 VKPPRGILLYGPPGTGKTLIARAVANETG 263 (489)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHHHCS
T ss_pred CCCCCcEEEECcCCCCHHHHHHHHHHHhC
Confidence 34556689999999999999999987544
No 380
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=93.61 E-value=0.0038 Score=49.27 Aligned_cols=55 Identities=5% Similarity=0.012 Sum_probs=40.1
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASH 62 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~ 62 (286)
||||+++ +|. + -.|.|.++|.+.... ....+.++|++|++. +..||.|++.+.+.
T Consensus 22 KSTl~~~La~~-~--~~g~i~i~~d~~~~~--~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~ 77 (191)
T 1zp6_A 22 KSTIAEALANL-P--GVPKVHFHSDDLWGY--IKHGRIDPWLPQSHQ--QNRMIMQIAADVAG 77 (191)
T ss_dssp HHHHHHHHHTC-S--SSCEEEECTTHHHHT--CCSSCCCTTSSSHHH--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc-c--CCCeEEEcccchhhh--hhcccccCCccchhh--hhHHHHHHHHHHHH
Confidence 8999999 997 3 468999999765321 112356789999765 46789999988664
No 381
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.52 E-value=0.046 Score=50.42 Aligned_cols=25 Identities=28% Similarity=0.434 Sum_probs=21.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHcCC
Q psy8953 255 GQLTAIMGPSGAGKSTLLNILAGLT 279 (286)
Q Consensus 255 Ge~~aivG~NGsGKSTLl~~l~GL~ 279 (286)
...+.|.||.|+|||||++.++.-+
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4578999999999999999998644
No 382
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=93.49 E-value=0.035 Score=50.33 Aligned_cols=27 Identities=33% Similarity=0.482 Sum_probs=23.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCCC
Q psy8953 254 AGQLTAIMGPSGAGKSTLLNILAGLTY 280 (286)
Q Consensus 254 ~Ge~~aivG~NGsGKSTLl~~l~GL~~ 280 (286)
++..+.+.||.|+|||||++.++..+.
T Consensus 62 ~~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 62 AGRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 455689999999999999999997654
No 383
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=93.46 E-value=0.047 Score=46.57 Aligned_cols=22 Identities=36% Similarity=0.416 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy8953 257 LTAIMGPSGAGKSTLLNILAGL 278 (286)
Q Consensus 257 ~~aivG~NGsGKSTLl~~l~GL 278 (286)
.+.|.||.|+||||+++.++.-
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~ 69 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALARE 69 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 6899999999999999999754
No 384
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=93.38 E-value=0.039 Score=47.25 Aligned_cols=22 Identities=23% Similarity=0.318 Sum_probs=19.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHHc
Q psy8953 256 QLTAIMGPSGAGKSTLLNILAG 277 (286)
Q Consensus 256 e~~aivG~NGsGKSTLl~~l~G 277 (286)
--++|+|..|+|||||++.+++
T Consensus 156 ~~i~i~G~~~~GKssli~~~~~ 177 (332)
T 2wkq_A 156 IKCVVVGDGAVGKTCLLISYTT 177 (332)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCChHHHHHHHHh
Confidence 3579999999999999988875
No 385
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.36 E-value=0.027 Score=50.42 Aligned_cols=28 Identities=29% Similarity=0.431 Sum_probs=23.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHHcCCCCCC
Q psy8953 256 QLTAIMGPSGAGKSTLLNILAGLTYLNF 283 (286)
Q Consensus 256 e~~aivG~NGsGKSTLl~~l~GL~~~~~ 283 (286)
.=+.+.||-|+|||+|++++|+-...+|
T Consensus 217 rGvLLyGPPGTGKTlLAkAiA~e~~~~f 244 (437)
T 4b4t_I 217 KGVILYGAPGTGKTLLAKAVANQTSATF 244 (437)
T ss_dssp SEEEEESSTTTTHHHHHHHHHHHHTCEE
T ss_pred CCCceECCCCchHHHHHHHHHHHhCCCE
Confidence 3489999999999999999998766654
No 386
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=93.32 E-value=0.054 Score=50.64 Aligned_cols=25 Identities=36% Similarity=0.530 Sum_probs=22.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHcC
Q psy8953 254 AGQLTAIMGPSGAGKSTLLNILAGL 278 (286)
Q Consensus 254 ~Ge~~aivG~NGsGKSTLl~~l~GL 278 (286)
.+.++.|.|++|+||||+++.+...
T Consensus 203 ~~~~~~I~G~pGTGKTt~i~~l~~~ 227 (574)
T 3e1s_A 203 GHRLVVLTGGPGTGKSTTTKAVADL 227 (574)
T ss_dssp TCSEEEEECCTTSCHHHHHHHHHHH
T ss_pred hCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 4679999999999999999988754
No 387
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=93.28 E-value=0.044 Score=49.51 Aligned_cols=22 Identities=23% Similarity=0.386 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy8953 257 LTAIMGPSGAGKSTLLNILAGL 278 (286)
Q Consensus 257 ~~aivG~NGsGKSTLl~~l~GL 278 (286)
+++|+|+-.+|||||++.|.|-
T Consensus 69 vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 69 AVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhhh
Confidence 8999999999999999999875
No 388
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.25 E-value=0.029 Score=50.72 Aligned_cols=31 Identities=26% Similarity=0.368 Sum_probs=25.1
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHHcCCCCCC
Q psy8953 253 KAGQLTAIMGPSGAGKSTLLNILAGLTYLNF 283 (286)
Q Consensus 253 ~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~~ 283 (286)
.+-.=+.+.||-|+|||+|++++|+-...+|
T Consensus 241 ~pprGILLyGPPGTGKTlLAkAiA~e~~~~f 271 (467)
T 4b4t_H 241 DPPKGILLYGPPGTGKTLCARAVANRTDATF 271 (467)
T ss_dssp CCCSEEEECSCTTSSHHHHHHHHHHHHTCEE
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHhccCCCe
Confidence 3344588999999999999999998666554
No 389
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=93.19 E-value=0.12 Score=40.02 Aligned_cols=37 Identities=5% Similarity=-0.078 Sum_probs=32.5
Q ss_pred cCC-CcchHHHHHHHHHHHHHHhCCCEEEEEEcCCCHH
Q psy8953 93 KKR-GLDSSSCSQCVSLLANLAKQGRTVVATIHTPSAL 129 (286)
Q Consensus 93 pts-gLD~~~~~~~~~~l~~l~~~g~tii~~~h~~~~~ 129 (286)
|++ ++|+..+..+.+++....++|.++|+++|.+...
T Consensus 109 ~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~~ 146 (180)
T 3ec2_A 109 LGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQR 146 (180)
T ss_dssp CSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSCC
T ss_pred CCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChhH
Confidence 664 8999999999999999988899999999997654
No 390
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=93.09 E-value=0.053 Score=50.36 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=20.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHc
Q psy8953 255 GQLTAIMGPSGAGKSTLLNILAG 277 (286)
Q Consensus 255 Ge~~aivG~NGsGKSTLl~~l~G 277 (286)
..+++|+|.-|.|||||++.++-
T Consensus 152 ~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 152 SFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHH
Confidence 36899999999999999999983
No 391
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=93.07 E-value=0.029 Score=48.52 Aligned_cols=24 Identities=38% Similarity=0.461 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q psy8953 257 LTAIMGPSGAGKSTLLNILAGLTY 280 (286)
Q Consensus 257 ~~aivG~NGsGKSTLl~~l~GL~~ 280 (286)
.+.|.||.|+|||||++.++..+.
T Consensus 47 ~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 47 GVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CEEEECCGGGCTTHHHHHHHHHSC
T ss_pred eEEEECCCCccHHHHHHHHHHhCc
Confidence 589999999999999999987654
No 392
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=92.86 E-value=0.058 Score=45.79 Aligned_cols=22 Identities=32% Similarity=0.368 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy8953 257 LTAIMGPSGAGKSTLLNILAGL 278 (286)
Q Consensus 257 ~~aivG~NGsGKSTLl~~l~GL 278 (286)
.+.|.||.|+||||+++.++.-
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~~ 61 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALARD 61 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHHH
T ss_pred eEEEECcCCcCHHHHHHHHHHH
Confidence 4899999999999999998754
No 393
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.82 E-value=0.06 Score=45.78 Aligned_cols=21 Identities=38% Similarity=0.436 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q psy8953 258 TAIMGPSGAGKSTLLNILAGL 278 (286)
Q Consensus 258 ~aivG~NGsGKSTLl~~l~GL 278 (286)
+.|.||.|+||||+++.++.-
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~ 65 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHE 65 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHH
Confidence 899999999999999998753
No 394
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=92.82 E-value=0.0082 Score=51.57 Aligned_cols=59 Identities=17% Similarity=0.194 Sum_probs=45.8
Q ss_pred Cchhhhh-cCCCCC-CceeEEEE---CCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHhcC
Q psy8953 1 MSIELNV-QSIRLT-GSSGKILV---NGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLK 64 (286)
Q Consensus 1 ~stll~~-~g~~~~-~~~G~i~~---~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~~~ 64 (286)
||||+++ +|+... ..+|+|.+ +|..... ...+.+||| |+..+++.+|+.+.+.+...++
T Consensus 93 KSTl~~~L~~~l~~~~~~G~i~vi~~d~~~~~~----~~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l~ 156 (308)
T 1sq5_A 93 KSTTARVLQALLSRWPEHRRVELITTDGFLHPN----QVLKERGLM-KKKGFPESYDMHRLVKFVSDLK 156 (308)
T ss_dssp HHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCH----HHHHHHTCT-TCTTSGGGBCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhCCCCCeEEEEecCCccCcH----HHHHhCCEe-ecCCCCCCccHHHHHHHHHHHh
Confidence 8999999 985331 36899999 9887542 224568899 8888889999999999988763
No 395
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=92.80 E-value=0.064 Score=50.07 Aligned_cols=24 Identities=29% Similarity=0.308 Sum_probs=20.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHc
Q psy8953 254 AGQLTAIMGPSGAGKSTLLNILAG 277 (286)
Q Consensus 254 ~Ge~~aivG~NGsGKSTLl~~l~G 277 (286)
...+++|+|+-|+|||||++.++.
T Consensus 146 ~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 146 EPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHC
T ss_pred CCceEEEEcCCCCCHHHHHHHHHh
Confidence 356899999999999999998864
No 396
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=92.76 E-value=0.051 Score=48.84 Aligned_cols=22 Identities=41% Similarity=0.546 Sum_probs=19.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHH
Q psy8953 255 GQLTAIMGPSGAGKSTLLNILA 276 (286)
Q Consensus 255 Ge~~aivG~NGsGKSTLl~~l~ 276 (286)
..++.|+|+.||||||+++.+.
T Consensus 53 ~~h~~i~G~tGsGKs~~~~~li 74 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLLRELA 74 (437)
T ss_dssp GGCEEEEECTTSSHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHH
Confidence 5689999999999999987654
No 397
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=92.73 E-value=0.041 Score=48.42 Aligned_cols=26 Identities=35% Similarity=0.428 Sum_probs=22.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCC
Q psy8953 254 AGQLTAIMGPSGAGKSTLLNILAGLT 279 (286)
Q Consensus 254 ~Ge~~aivG~NGsGKSTLl~~l~GL~ 279 (286)
+|-+++|=|.-||||||+++.|+-.+
T Consensus 48 ~~~fIt~EG~dGsGKTT~~~~Lae~L 73 (376)
T 1of1_A 48 TLLRVYIDGPHGMGKTTTTQLLVALG 73 (376)
T ss_dssp EEEEEEECSSTTSSHHHHHHHHHC--
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 46689999999999999999998654
No 398
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=92.58 E-value=0.046 Score=53.67 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=21.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHcCC
Q psy8953 255 GQLTAIMGPSGAGKSTLLNILAGLT 279 (286)
Q Consensus 255 Ge~~aivG~NGsGKSTLl~~l~GL~ 279 (286)
...+.|+|++|+|||||++.++..+
T Consensus 191 ~~~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp CCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred CCceEEEcCCCCCHHHHHHHHHHHH
Confidence 4467999999999999999998754
No 399
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=92.51 E-value=0.067 Score=51.89 Aligned_cols=31 Identities=29% Similarity=0.385 Sum_probs=25.3
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHHcCCCCCC
Q psy8953 253 KAGQLTAIMGPSGAGKSTLLNILAGLTYLNF 283 (286)
Q Consensus 253 ~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~~ 283 (286)
.+-.-+.+.||.|+|||||+|.+++-+..+|
T Consensus 236 ~~p~GILL~GPPGTGKT~LAraiA~elg~~~ 266 (806)
T 3cf2_A 236 KPPRGILLYGPPGTGKTLIARAVANETGAFF 266 (806)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHTTTTCEE
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 3444589999999999999999998766554
No 400
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=92.48 E-value=0.056 Score=47.72 Aligned_cols=22 Identities=41% Similarity=0.545 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy8953 257 LTAIMGPSGAGKSTLLNILAGL 278 (286)
Q Consensus 257 ~~aivG~NGsGKSTLl~~l~GL 278 (286)
-+||||..-+|||||++.|+|-
T Consensus 74 ~V~ivG~PNvGKSTL~n~Lt~~ 95 (376)
T 4a9a_A 74 SVGFVGFPSVGKSTLLSKLTGT 95 (376)
T ss_dssp EEEEECCCCHHHHHHHHHHHSB
T ss_pred eEEEECCCCCCHHHHHHHHhCC
Confidence 5799998889999999999984
No 401
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=92.47 E-value=0.078 Score=48.08 Aligned_cols=28 Identities=25% Similarity=0.497 Sum_probs=25.3
Q ss_pred eEEeCCCEEEEEcCCCCcHHHHHHHHHc
Q psy8953 250 GEFKAGQLTAIMGPSGAGKSTLLNILAG 277 (286)
Q Consensus 250 l~i~~Ge~~aivG~NGsGKSTLl~~l~G 277 (286)
+.+-+|+-.+|+|+.|+|||||+..|+-
T Consensus 148 ~pigkGQr~~Ifgg~G~GKT~L~~~i~~ 175 (482)
T 2ck3_D 148 APYAKGGKIGLFGGAGVGKTVLIMELIN 175 (482)
T ss_dssp SCEETTCEEEEEECTTSSHHHHHHHHHH
T ss_pred cccccCCeeeeecCCCCChHHHHHHHHH
Confidence 4788999999999999999999988764
No 402
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=92.35 E-value=0.0011 Score=56.10 Aligned_cols=85 Identities=9% Similarity=0.012 Sum_probs=52.3
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCc-ccCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDD-ALRPKLTVTEAMMIASHLKLGFKVSTQEKKDQV 78 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~-~~~~~~tV~e~l~f~~~~~~~~~~~~~~~~~~v 78 (286)
||||+++ +|.... |.|.++|.++.........+.++++||+. ...|.+++.|++.+.+..+.. ...+...++
T Consensus 57 KTtLakala~~~~~---~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~---~~~~~~~~~ 130 (274)
T 2x8a_A 57 KTLLAKAVANESGL---NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSD---RETGASVRV 130 (274)
T ss_dssp HHHHHHHHHHHTTC---EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC------------CTTH
T ss_pred HHHHHHHHHHHcCC---CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCC---CcchHHHHH
Confidence 7999999 985432 68999998875433334457789999986 467788888887664432110 000000111
Q ss_pred hhh-hhhcccCCccc
Q psy8953 79 SLE-LWNNFCKKKKK 92 (286)
Q Consensus 79 ~l~-~~~~~~gG~kq 92 (286)
+. ....++|||+|
T Consensus 131 -~~~~l~~Lsgg~~~ 144 (274)
T 2x8a_A 131 -VNQLLTEMDGLEAR 144 (274)
T ss_dssp -HHHHHHHHHTCCST
T ss_pred -HHHHHHhhhccccc
Confidence 12 45667899988
No 403
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=92.33 E-value=0.022 Score=52.09 Aligned_cols=25 Identities=44% Similarity=0.522 Sum_probs=21.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHcCC
Q psy8953 255 GQLTAIMGPSGAGKSTLLNILAGLT 279 (286)
Q Consensus 255 Ge~~aivG~NGsGKSTLl~~l~GL~ 279 (286)
|=.++|+|..++|||||++.|+|-.
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~ 267 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNED 267 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHT
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCC
Confidence 3458999999999999999999854
No 404
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=92.27 E-value=0.093 Score=54.83 Aligned_cols=26 Identities=31% Similarity=0.553 Sum_probs=24.0
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHH
Q psy8953 251 EFKAGQLTAIMGPSGAGKSTLLNILA 276 (286)
Q Consensus 251 ~i~~Ge~~aivG~NGsGKSTLl~~l~ 276 (286)
=+++|+++.|.|+.|+|||||+..++
T Consensus 379 Gl~~G~lilI~G~pGsGKTtLaLq~a 404 (1706)
T 3cmw_A 379 GLPMGRIVEIYGPESSGKTTLTLQVI 404 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHH
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 38899999999999999999998876
No 405
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=92.11 E-value=0.087 Score=50.90 Aligned_cols=27 Identities=26% Similarity=0.329 Sum_probs=23.3
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHHcCC
Q psy8953 253 KAGQLTAIMGPSGAGKSTLLNILAGLT 279 (286)
Q Consensus 253 ~~Ge~~aivG~NGsGKSTLl~~l~GL~ 279 (286)
..+..+.|+|+.|+||||+++.++..+
T Consensus 205 ~~~~~vlL~G~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 205 RRKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence 367788999999999999999998643
No 406
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=92.08 E-value=0.076 Score=48.56 Aligned_cols=23 Identities=30% Similarity=0.304 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q psy8953 257 LTAIMGPSGAGKSTLLNILAGLT 279 (286)
Q Consensus 257 ~~aivG~NGsGKSTLl~~l~GL~ 279 (286)
.++|+|..|+|||||++.|.+-.
T Consensus 324 ki~lvG~~nvGKSsLl~~l~~~~ 346 (497)
T 3lvq_E 324 RILMLGLDAAGKTTILYKLKLGQ 346 (497)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Confidence 57999999999999999998743
No 407
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=92.04 E-value=0.082 Score=49.80 Aligned_cols=22 Identities=36% Similarity=0.347 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy8953 257 LTAIMGPSGAGKSTLLNILAGL 278 (286)
Q Consensus 257 ~~aivG~NGsGKSTLl~~l~GL 278 (286)
-++|+|..|+|||||+..|.+-
T Consensus 169 kV~ivG~~n~GKSTLin~Ll~~ 190 (611)
T 3izq_1 169 SFVVLGHVDAGKSTLMGRLLYD 190 (611)
T ss_dssp EEEEECCSSSCHHHHHHHHHSC
T ss_pred EEEEEECCCCCHHHHHHHHHHh
Confidence 5799999999999999999865
No 408
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=92.01 E-value=0.1 Score=55.23 Aligned_cols=27 Identities=30% Similarity=0.539 Sum_probs=24.6
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHHc
Q psy8953 251 EFKAGQLTAIMGPSGAGKSTLLNILAG 277 (286)
Q Consensus 251 ~i~~Ge~~aivG~NGsGKSTLl~~l~G 277 (286)
=+++|+++.|.|+.|+|||||+..++.
T Consensus 379 Gl~~G~lilI~G~pGsGKTtLaLqia~ 405 (2050)
T 3cmu_A 379 GLPMGRIVEIYGPESSGKTTLTLQVIA 405 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CccCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 388999999999999999999988863
No 409
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=91.92 E-value=0.11 Score=51.27 Aligned_cols=53 Identities=13% Similarity=0.124 Sum_probs=42.4
Q ss_pred cCCCcchHHHHHHH-HHHHHHHh-CCCEEEEEEcCCCHHHHHHhhhHhh-hcCCeeec
Q psy8953 93 KKRGLDSSSCSQCV-SLLANLAK-QGRTVVATIHTPSALLFEKFDSLYA-LAKGHCIY 147 (286)
Q Consensus 93 ptsgLD~~~~~~~~-~~l~~l~~-~g~tii~~~h~~~~~~~~~~d~v~~-l~~G~i~~ 147 (286)
|++|||+.....++ .+++.+++ .|.|+|+++|..+ +..++|+.-- +.++++.+
T Consensus 761 P~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~e--l~~l~~~~~~~v~n~~~~~ 816 (918)
T 3thx_B 761 LGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPP--VCELEKNYSHQVGNYHMGF 816 (918)
T ss_dssp TTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGG--GGGHHHHTTTTEEEEEEEE
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHH--HHHHHhhcccceEEEEEEE
Confidence 99999999999997 88899976 5999999999975 4467787653 55566654
No 410
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=91.75 E-value=0.095 Score=47.45 Aligned_cols=24 Identities=29% Similarity=0.477 Sum_probs=21.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHHcCC
Q psy8953 256 QLTAIMGPSGAGKSTLLNILAGLT 279 (286)
Q Consensus 256 e~~aivG~NGsGKSTLl~~l~GL~ 279 (286)
--++|+|..|+|||||++.+.|-.
T Consensus 196 ~ki~ivG~~~vGKSslin~l~~~~ 219 (456)
T 4dcu_A 196 IQFCLIGRPNVGKSSLVNAMLGEE 219 (456)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTST
T ss_pred ceeEEecCCCCCHHHHHHHHhCCC
Confidence 357999999999999999999764
No 411
>1j3b_A ATP-dependent phosphoenolpyruvate carboxykinase; adenosine triphosphate, T thermophilus; 2.00A {Thermus thermophilus} SCOP: c.91.1.1 c.109.1.1 PDB: 1xkv_A* 2pc9_A*
Probab=91.71 E-value=0.073 Score=48.85 Aligned_cols=21 Identities=43% Similarity=0.726 Sum_probs=18.7
Q ss_pred eCCCEEEEEcCCCCcHHHHHH
Q psy8953 253 KAGQLTAIMGPSGAGKSTLLN 273 (286)
Q Consensus 253 ~~Ge~~aivG~NGsGKSTLl~ 273 (286)
..|+.+.+.|++|||||||+.
T Consensus 223 ~~g~~~~ffGlSGtGKTtLs~ 243 (529)
T 1j3b_A 223 KEGDVAVFFGLSGTGKTTLST 243 (529)
T ss_dssp TTCCEEEEEECTTSCHHHHTC
T ss_pred CCCcEEEEEccccCChhhHhh
Confidence 478999999999999999863
No 412
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=91.71 E-value=0.003 Score=50.47 Aligned_cols=57 Identities=7% Similarity=-0.081 Sum_probs=39.7
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHHh
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASH 62 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~~ 62 (286)
||||+++ +|+.+ .+.+++..............++|++|++..+..+++.+++.+.++
T Consensus 20 KSTl~~~L~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (205)
T 3tr0_A 20 KTSLVRALVKALA-----EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLEHAT 77 (205)
T ss_dssp HHHHHHHHHHHSS-----SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEEE
T ss_pred HHHHHHHHHhhCC-----CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEEeeee
Confidence 8999999 99654 467777666542222335678999999988887777766654443
No 413
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=91.55 E-value=0.095 Score=47.49 Aligned_cols=21 Identities=33% Similarity=0.618 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy8953 257 LTAIMGPSGAGKSTLLNILAG 277 (286)
Q Consensus 257 ~~aivG~NGsGKSTLl~~l~G 277 (286)
.+.|.|+-|+||||+++.++-
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~ 67 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIE 67 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 999999999999999998864
No 414
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=91.55 E-value=0.13 Score=54.64 Aligned_cols=26 Identities=31% Similarity=0.553 Sum_probs=24.1
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHH
Q psy8953 251 EFKAGQLTAIMGPSGAGKSTLLNILA 276 (286)
Q Consensus 251 ~i~~Ge~~aivG~NGsGKSTLl~~l~ 276 (286)
=+++|+.+.|.||.|+|||||+..++
T Consensus 1423 Gi~~g~~vll~GppGtGKT~LA~ala 1448 (2050)
T 3cmu_A 1423 GLPMGRIVEIYGPESSGKTTLTLQVI 1448 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHH
Confidence 48999999999999999999998884
No 415
>1ii2_A Phosphoenolpyruvate carboxykinase; phosphate binding loop, lyase; 2.00A {Trypanosoma cruzi} SCOP: c.91.1.1 c.109.1.1
Probab=91.47 E-value=0.1 Score=47.86 Aligned_cols=21 Identities=48% Similarity=0.740 Sum_probs=18.9
Q ss_pred eCCCEEEEEcCCCCcHHHHHH
Q psy8953 253 KAGQLTAIMGPSGAGKSTLLN 273 (286)
Q Consensus 253 ~~Ge~~aivG~NGsGKSTLl~ 273 (286)
..|+.+.+.|.+|+|||||..
T Consensus 211 ~~g~~~~ffGlSGtGKTTLs~ 231 (524)
T 1ii2_A 211 KQGDVTVFFGLSGTGKTTLSA 231 (524)
T ss_dssp TTCCEEEEECCTTSSHHHHHC
T ss_pred CCCCEEEEEccCCcchhhhhh
Confidence 578999999999999999863
No 416
>2olr_A Phosphoenolpyruvate carboxykinase; carbon dioxide, lyase; HET: ATP; 1.60A {Escherichia coli K12} SCOP: c.91.1.1 c.109.1.1 PDB: 1k3c_A* 1k3d_A* 1aq2_A* 2olq_A* 1os1_A* 2pxz_X* 1ayl_A* 2py7_X* 1oen_A 1ylh_A* 1ygg_A*
Probab=91.45 E-value=0.1 Score=47.91 Aligned_cols=19 Identities=42% Similarity=0.730 Sum_probs=17.8
Q ss_pred CCCEEEEEcCCCCcHHHHH
Q psy8953 254 AGQLTAIMGPSGAGKSTLL 272 (286)
Q Consensus 254 ~Ge~~aivG~NGsGKSTLl 272 (286)
.|+.+.+.|.+|+|||||.
T Consensus 240 ~g~~~lffGlSGtGKTTLs 258 (540)
T 2olr_A 240 KGDVAVFFGLSGTGKTTLS 258 (540)
T ss_dssp TSCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEEccCCCCHHHHh
Confidence 6899999999999999986
No 417
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=91.22 E-value=0.12 Score=44.60 Aligned_cols=26 Identities=19% Similarity=0.121 Sum_probs=22.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCC
Q psy8953 254 AGQLTAIMGPSGAGKSTLLNILAGLT 279 (286)
Q Consensus 254 ~Ge~~aivG~NGsGKSTLl~~l~GL~ 279 (286)
++..+.|.||.|+|||++++.++.-+
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~v~~~L 69 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVNDVMDEL 69 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 56788999999999999999998654
No 418
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=91.21 E-value=0.16 Score=40.46 Aligned_cols=51 Identities=14% Similarity=0.068 Sum_probs=37.0
Q ss_pred cCCCcchHH--------HHHHHHHHHHHHhC-CCEEEEEEcCCCH------------HHHHHhhhHhhhcCC
Q psy8953 93 KKRGLDSSS--------CSQCVSLLANLAKQ-GRTVVATIHTPSA------------LLFEKFDSLYALAKG 143 (286)
Q Consensus 93 ptsgLD~~~--------~~~~~~~l~~l~~~-g~tii~~~h~~~~------------~~~~~~d~v~~l~~G 143 (286)
|++.+|+.. ..++++.|++++++ |.|+|++.|.... .+...+|++++|...
T Consensus 114 ~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 114 ITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp CCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred cHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 888888743 24566678888775 9999999998652 355678888877643
No 419
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=91.06 E-value=0.11 Score=51.06 Aligned_cols=24 Identities=33% Similarity=0.531 Sum_probs=21.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHHcCC
Q psy8953 256 QLTAIMGPSGAGKSTLLNILAGLT 279 (286)
Q Consensus 256 e~~aivG~NGsGKSTLl~~l~GL~ 279 (286)
..+.|.||+|+|||+|++.|+..+
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999998754
No 420
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=91.04 E-value=0.081 Score=49.68 Aligned_cols=29 Identities=21% Similarity=0.407 Sum_probs=24.2
Q ss_pred EeCCCEEEEEcCCCCcHHHHHHHHHcCCC
Q psy8953 252 FKAGQLTAIMGPSGAGKSTLLNILAGLTY 280 (286)
Q Consensus 252 i~~Ge~~aivG~NGsGKSTLl~~l~GL~~ 280 (286)
++..-.+.|+||.|+|||+|++.++....
T Consensus 324 ~r~~~~vLL~GppGtGKT~LAr~la~~~~ 352 (595)
T 3f9v_A 324 IRGDIHILIIGDPGTAKSQMLQFISRVAP 352 (595)
T ss_dssp ECCSCCEEEEESSCCTHHHHHHSSSTTCS
T ss_pred cCCCcceEEECCCchHHHHHHHHHHHhCC
Confidence 33344899999999999999999998764
No 421
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=90.91 E-value=0.13 Score=49.70 Aligned_cols=27 Identities=22% Similarity=0.393 Sum_probs=22.9
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHHcCC
Q psy8953 253 KAGQLTAIMGPSGAGKSTLLNILAGLT 279 (286)
Q Consensus 253 ~~Ge~~aivG~NGsGKSTLl~~l~GL~ 279 (286)
.....+.|+||.|+||||+++.|+..+
T Consensus 199 ~~~~~vLL~G~pGtGKT~la~~la~~l 225 (758)
T 3pxi_A 199 RTKNNPVLIGEPGVGKTAIAEGLAQQI 225 (758)
T ss_dssp SSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 445578999999999999999998654
No 422
>1ytm_A Phosphoenolpyruvate carboxykinase [ATP], phosphoenolpyruvate; domain closure, nucleotide binding; HET: ATP; 2.20A {Anaerobiospirillum succiniciproducens} PDB: 1yvy_A
Probab=90.85 E-value=0.13 Score=47.30 Aligned_cols=20 Identities=40% Similarity=0.596 Sum_probs=17.9
Q ss_pred eCC-CEEEEEcCCCCcHHHHH
Q psy8953 253 KAG-QLTAIMGPSGAGKSTLL 272 (286)
Q Consensus 253 ~~G-e~~aivG~NGsGKSTLl 272 (286)
..| +.+.+.|.+|+|||||.
T Consensus 232 ~~g~~~~~ffGlSGtGKTTLs 252 (532)
T 1ytm_A 232 LEGKNTAIFFGLSGTGKTTLS 252 (532)
T ss_dssp TTSCSEEEEECCTTSSHHHHH
T ss_pred CCCCeEEEEEecCCCCHHHHh
Confidence 356 89999999999999987
No 423
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=90.69 E-value=0.099 Score=47.75 Aligned_cols=22 Identities=36% Similarity=0.347 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy8953 257 LTAIMGPSGAGKSTLLNILAGL 278 (286)
Q Consensus 257 ~~aivG~NGsGKSTLl~~l~GL 278 (286)
-++|+|..|+|||||+..|.+-
T Consensus 35 ki~iiG~~~~GKSTLi~~Ll~~ 56 (483)
T 3p26_A 35 SFVVLGHVDAGKSTLMGRLLYD 56 (483)
T ss_dssp EEEEESCGGGTHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 4699999999999999998653
No 424
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=90.53 E-value=0.078 Score=48.01 Aligned_cols=31 Identities=19% Similarity=0.194 Sum_probs=27.2
Q ss_pred eEEeCCCEEEEEcCCCCcHHHHHHHHHcCCC
Q psy8953 250 GEFKAGQLTAIMGPSGAGKSTLLNILAGLTY 280 (286)
Q Consensus 250 l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~ 280 (286)
+.+-+|+-.+|.|..|+|||||+..|+.-..
T Consensus 147 ~pigrGQr~~Ifgg~G~GKt~Ll~~Ia~~~~ 177 (469)
T 2c61_A 147 NTLVRGQKLPIFSASGLPHNEIALQIARQAS 177 (469)
T ss_dssp SCCBTTCBCCEEECTTSCHHHHHHHHHHHCB
T ss_pred eccccCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4788999999999999999999999986443
No 425
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=90.51 E-value=0.17 Score=42.91 Aligned_cols=27 Identities=30% Similarity=0.425 Sum_probs=21.8
Q ss_pred EeCCCEEEEEcCCCCcHHHHHHHHHcC
Q psy8953 252 FKAGQLTAIMGPSGAGKSTLLNILAGL 278 (286)
Q Consensus 252 i~~Ge~~aivG~NGsGKSTLl~~l~GL 278 (286)
-.++.+++|+|.-|+||||++-.|+-.
T Consensus 38 ~~~~~vI~v~~KGGvGKTT~a~nLA~~ 64 (307)
T 3end_A 38 ITGAKVFAVYGKGGIGKSTTSSNLSAA 64 (307)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCceEEEEECCCCccHHHHHHHHHHH
Confidence 446789999999999999999887743
No 426
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C
Probab=90.42 E-value=0.15 Score=47.07 Aligned_cols=28 Identities=39% Similarity=0.413 Sum_probs=25.6
Q ss_pred eEEeCCCEEEEEcCCCCcHHHHHHHHHc
Q psy8953 250 GEFKAGQLTAIMGPSGAGKSTLLNILAG 277 (286)
Q Consensus 250 l~i~~Ge~~aivG~NGsGKSTLl~~l~G 277 (286)
+.+-+|+-.+|.|+.|+|||+|+..|+.
T Consensus 216 ~PigrGqr~~Ifg~~g~GKT~l~~~ia~ 243 (578)
T 3gqb_A 216 FPVAMGGTAAIPGPFGSGKSVTQQSLAK 243 (578)
T ss_dssp SCEETTCEEEECCCTTSCHHHHHHHHHH
T ss_pred ccccCCCEEeeeCCCCccHHHHHHHHHh
Confidence 4788999999999999999999998874
No 427
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=90.37 E-value=0.14 Score=43.77 Aligned_cols=23 Identities=22% Similarity=0.252 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q psy8953 257 LTAIMGPSGAGKSTLLNILAGLT 279 (286)
Q Consensus 257 ~~aivG~NGsGKSTLl~~l~GL~ 279 (286)
.+.+.||.|+||||+++.++.-+
T Consensus 50 ~~L~~G~~G~GKT~la~~la~~l 72 (324)
T 3u61_B 50 IILHSPSPGTGKTTVAKALCHDV 72 (324)
T ss_dssp EEEECSSTTSSHHHHHHHHHHHT
T ss_pred EEEeeCcCCCCHHHHHHHHHHHh
Confidence 56677889999999999998644
No 428
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=90.27 E-value=0.16 Score=47.05 Aligned_cols=28 Identities=32% Similarity=0.447 Sum_probs=25.5
Q ss_pred eEEeCCCEEEEEcCCCCcHHHHHHHHHc
Q psy8953 250 GEFKAGQLTAIMGPSGAGKSTLLNILAG 277 (286)
Q Consensus 250 l~i~~Ge~~aivG~NGsGKSTLl~~l~G 277 (286)
+.+-+|+-.+|.|+.|+|||+|+..|+.
T Consensus 227 ~PigrGqr~~Ifgg~g~GKT~L~~~ia~ 254 (600)
T 3vr4_A 227 FPVTKGGAAAVPGPFGAGKTVVQHQIAK 254 (600)
T ss_dssp SCCBTTCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCccCCCEEeeecCCCccHHHHHHHHHh
Confidence 4688999999999999999999998874
No 429
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=90.22 E-value=0.12 Score=47.05 Aligned_cols=28 Identities=25% Similarity=0.532 Sum_probs=25.0
Q ss_pred eEEeCCCEEEEEcCCCCcHHHHHHHHHc
Q psy8953 250 GEFKAGQLTAIMGPSGAGKSTLLNILAG 277 (286)
Q Consensus 250 l~i~~Ge~~aivG~NGsGKSTLl~~l~G 277 (286)
+.+-+|+-++|.|+.|+|||||+..|+-
T Consensus 160 ~pigkGqr~gIfgg~GvGKT~L~~~l~~ 187 (498)
T 1fx0_B 160 APYRRGGKIGLFGGAGVGKTVLIMELIN 187 (498)
T ss_dssp SCCCTTCCEEEEECSSSSHHHHHHHHHH
T ss_pred cccccCCeEEeecCCCCCchHHHHHHHH
Confidence 4688999999999999999999987764
No 430
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=90.06 E-value=0.022 Score=46.63 Aligned_cols=43 Identities=12% Similarity=0.110 Sum_probs=23.6
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchh--------hhcccceeeEEecC
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSAC--------IEQFLKLSCYIQQD 44 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~--------~~~~~~~~g~v~Q~ 44 (286)
|||||++ +|.... .+|+|.++|.++...+ ....+..++||+|+
T Consensus 40 KSTll~~i~g~~~~-~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 40 KSTTMAAFVTALIP-DLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp HHHHHHHHHHHHSC-CTTTC------------------CGGGBCSSEEEEEEE
T ss_pred HHHHHHHHhccccc-CCCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 7999999 995433 4789999998873211 11235789999995
No 431
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=90.01 E-value=0.18 Score=48.76 Aligned_cols=23 Identities=35% Similarity=0.544 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q psy8953 257 LTAIMGPSGAGKSTLLNILAGLT 279 (286)
Q Consensus 257 ~~aivG~NGsGKSTLl~~l~GL~ 279 (286)
.+.+.||.|+|||+|++.|+..+
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998654
No 432
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=89.98 E-value=0.032 Score=50.10 Aligned_cols=22 Identities=32% Similarity=0.581 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy8953 257 LTAIMGPSGAGKSTLLNILAGL 278 (286)
Q Consensus 257 ~~aivG~NGsGKSTLl~~l~GL 278 (286)
.++|+|+.|+|||||++.|.+-
T Consensus 36 kI~IvG~~~vGKSTLin~L~~~ 57 (423)
T 3qq5_A 36 YIVVAGRRNVGKSSFMNALVGQ 57 (423)
T ss_dssp EEEEECSCSTTTTTTTTSSCC-
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5799999999999998877653
No 433
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=89.87 E-value=0.2 Score=47.15 Aligned_cols=24 Identities=29% Similarity=0.500 Sum_probs=20.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHc
Q psy8953 254 AGQLTAIMGPSGAGKSTLLNILAG 277 (286)
Q Consensus 254 ~Ge~~aivG~NGsGKSTLl~~l~G 277 (286)
.+.++.|.|+.|+||||++..+..
T Consensus 163 ~~~~~vi~G~pGTGKTt~l~~ll~ 186 (608)
T 1w36_D 163 TRRISVISGGPGTGKTTTVAKLLA 186 (608)
T ss_dssp TBSEEEEECCTTSTHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCCHHHHHHHHHH
Confidence 578999999999999998876653
No 434
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=89.78 E-value=0.13 Score=47.40 Aligned_cols=28 Identities=36% Similarity=0.427 Sum_probs=25.5
Q ss_pred eEEeCCCEEEEEcCCCCcHHHHHHHHHc
Q psy8953 250 GEFKAGQLTAIMGPSGAGKSTLLNILAG 277 (286)
Q Consensus 250 l~i~~Ge~~aivG~NGsGKSTLl~~l~G 277 (286)
+.+-+|+-.+|.|+.|+|||+|+..|+.
T Consensus 222 ~PigkGqr~~I~g~~g~GKT~L~~~ia~ 249 (588)
T 3mfy_A 222 FPQAKGGTAAIPGPAGSGKTVTQHQLAK 249 (588)
T ss_dssp SCEETTCEEEECSCCSHHHHHHHHHHHH
T ss_pred CCcccCCeEEeecCCCCCHHHHHHHHHh
Confidence 4788999999999999999999998864
No 435
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=89.61 E-value=0.19 Score=48.43 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q psy8953 257 LTAIMGPSGAGKSTLLNILAGLT 279 (286)
Q Consensus 257 ~~aivG~NGsGKSTLl~~l~GL~ 279 (286)
.+.|.||.|+|||+|++.|+..+
T Consensus 490 ~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHh
Confidence 78999999999999999998655
No 436
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=89.20 E-value=0.18 Score=50.32 Aligned_cols=22 Identities=23% Similarity=0.200 Sum_probs=20.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHH
Q psy8953 255 GQLTAIMGPSGAGKSTLLNILA 276 (286)
Q Consensus 255 Ge~~aivG~NGsGKSTLl~~l~ 276 (286)
..+++|+|+-|.|||||++.++
T Consensus 150 ~RVV~IvGmGGIGKTTLAk~Vy 171 (1221)
T 1vt4_I 150 AKNVLIDGVLGSGKTWVALDVC 171 (1221)
T ss_dssp SCEEEECCSTTSSHHHHHHHHH
T ss_pred CeEEEEEcCCCccHHHHHHHHH
Confidence 4699999999999999999886
No 437
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=89.18 E-value=0.2 Score=47.02 Aligned_cols=21 Identities=29% Similarity=0.339 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy8953 257 LTAIMGPSGAGKSTLLNILAG 277 (286)
Q Consensus 257 ~~aivG~NGsGKSTLl~~l~G 277 (286)
.++|+|.-++|||||+..|.+
T Consensus 179 ~I~iiG~~d~GKSTLi~~Ll~ 199 (592)
T 3mca_A 179 HLVVTGHVDSGKSTMLGRIMF 199 (592)
T ss_dssp EEEEECCSSSTHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 479999999999999999853
No 438
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=89.09 E-value=0.0039 Score=52.63 Aligned_cols=57 Identities=5% Similarity=-0.095 Sum_probs=39.8
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcc-cCCCCCHHHHHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDA-LRPKLTVTEAMMIA 60 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~-~~~~~tV~e~l~f~ 60 (286)
||||++. ++... .|.|.++|.++.........+.+++++|+.. ..+.+++.|++...
T Consensus 86 KTtl~~~i~~~~~---~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l 144 (278)
T 1iy2_A 86 KTHLARAVAGEAR---VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAV 144 (278)
T ss_dssp HHHHHHHHHHHTT---CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEEEEEETHHHH
T ss_pred HHHHHHHHHHHcC---CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhh
Confidence 7999999 88543 6789998876532211223456788999875 67888888888443
No 439
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=89.02 E-value=0.17 Score=45.68 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=20.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHHcC
Q psy8953 256 QLTAIMGPSGAGKSTLLNILAGL 278 (286)
Q Consensus 256 e~~aivG~NGsGKSTLl~~l~GL 278 (286)
-+++|+|+-++|||||++.|.++
T Consensus 68 ~vvsv~G~~~~gks~l~N~ll~~ 90 (457)
T 4ido_A 68 VAVSVAGAFRKGKSFLMDFMLRY 90 (457)
T ss_dssp EEEEEEEBTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCchhHHHHHHHHH
Confidence 37899999999999999988654
No 440
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=89.00 E-value=0.021 Score=44.65 Aligned_cols=48 Identities=6% Similarity=-0.150 Sum_probs=27.4
Q ss_pred Cchhhhh-cCC-CCC-CceeEEEECCeecCchh---hhccc-ceee----EEecCcccC
Q psy8953 1 MSIELNV-QSI-RLT-GSSGKILVNGQERKSAC---IEQFL-KLSC----YIQQDDALR 48 (286)
Q Consensus 1 ~stll~~-~g~-~~~-~~~G~i~~~g~~~~~~~---~~~~~-~~~g----~v~Q~~~~~ 48 (286)
||||++. +|+ .+. ...|.|++||.++...+ ...++ +.+| |+.|++.+|
T Consensus 15 KSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~ 73 (171)
T 2f1r_A 15 KTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF 73 (171)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE
T ss_pred HHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE
Confidence 7999999 885 332 35799999999854321 12343 3566 899988755
No 441
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=88.98 E-value=0.03 Score=50.20 Aligned_cols=43 Identities=23% Similarity=0.179 Sum_probs=25.1
Q ss_pred CCcchHHHHHHHHHHHHH-HhCCCEEEEEEcCCCHHHHHHhhhHh
Q psy8953 95 RGLDSSSCSQCVSLLANL-AKQGRTVVATIHTPSALLFEKFDSLY 138 (286)
Q Consensus 95 sgLD~~~~~~~~~~l~~l-~~~g~tii~~~h~~~~~~~~~~d~v~ 138 (286)
+.+|...+ +.+..+.+. .+.|.+++.+.-.-..-+.++++.++
T Consensus 277 NKlDl~~~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i~ 320 (416)
T 1udx_A 277 NKVDLLEE-EAVKALADALAREGLAVLPVSALTGAGLPALKEALH 320 (416)
T ss_dssp ECCTTSCH-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHH
T ss_pred ECCChhhH-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHHH
Confidence 57888776 444444444 44577777655333334556677665
No 442
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=88.61 E-value=0.13 Score=46.30 Aligned_cols=30 Identities=20% Similarity=0.225 Sum_probs=26.5
Q ss_pred eEEeCCCEEEEEcCCCCcHHHHHHHHHcCC
Q psy8953 250 GEFKAGQLTAIMGPSGAGKSTLLNILAGLT 279 (286)
Q Consensus 250 l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~ 279 (286)
+.+-+|+-.+|.|..|.|||||+..|+.-.
T Consensus 146 ~pigrGQr~~Ifgg~G~GKt~L~~~Ia~~~ 175 (465)
T 3vr4_D 146 NTLVRGQKLPVFSGSGLPHKELAAQIARQA 175 (465)
T ss_dssp SCCBTTCBCCEEECTTSCHHHHHHHHHHHC
T ss_pred cccccCCEEEEeCCCCcChHHHHHHHHHHH
Confidence 478899999999999999999999887543
No 443
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=88.51 E-value=0.11 Score=46.73 Aligned_cols=30 Identities=20% Similarity=0.220 Sum_probs=26.4
Q ss_pred eEEeCCCEEEEEcCCCCcHHHHHHHHHcCC
Q psy8953 250 GEFKAGQLTAIMGPSGAGKSTLLNILAGLT 279 (286)
Q Consensus 250 l~i~~Ge~~aivG~NGsGKSTLl~~l~GL~ 279 (286)
+.+-+|+-.+|.|..|.|||||+..|+.-.
T Consensus 142 ~pigrGQr~~Ifgg~G~GKt~L~~~Ia~~~ 171 (464)
T 3gqb_B 142 NTLVRGQKLPIFSGSGLPANEIAAQIARQA 171 (464)
T ss_dssp SCCBTTCBCCEEEETTSCHHHHHHHHHHHC
T ss_pred cccccCCEEEEecCCCCCchHHHHHHHHHH
Confidence 478899999999999999999999887543
No 444
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=88.49 E-value=0.31 Score=40.76 Aligned_cols=23 Identities=22% Similarity=0.442 Sum_probs=20.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHHcC
Q psy8953 256 QLTAIMGPSGAGKSTLLNILAGL 278 (286)
Q Consensus 256 e~~aivG~NGsGKSTLl~~l~GL 278 (286)
-.+.|.||-|+|||+|+++|+..
T Consensus 105 n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 105 NTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHhh
Confidence 46899999999999999999964
No 445
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=88.40 E-value=0.21 Score=45.63 Aligned_cols=30 Identities=20% Similarity=0.356 Sum_probs=26.0
Q ss_pred eEEeCCCEEEEEcCCCCcHHHH-HHHHHcCC
Q psy8953 250 GEFKAGQLTAIMGPSGAGKSTL-LNILAGLT 279 (286)
Q Consensus 250 l~i~~Ge~~aivG~NGsGKSTL-l~~l~GL~ 279 (286)
+.+-+|+-.+|+|+.|+||||| +.+|+.-.
T Consensus 170 ~PigrGQR~~I~g~~g~GKT~Lal~~I~~~~ 200 (515)
T 2r9v_A 170 IPIGRGQRELIIGDRQTGKTAIAIDTIINQK 200 (515)
T ss_dssp SCEETTCBEEEEEETTSSHHHHHHHHHHTTT
T ss_pred cccccCCEEEEEcCCCCCccHHHHHHHHHhh
Confidence 4788999999999999999999 67887544
No 446
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=88.07 E-value=0.27 Score=47.44 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q psy8953 257 LTAIMGPSGAGKSTLLNILAGLT 279 (286)
Q Consensus 257 ~~aivG~NGsGKSTLl~~l~GL~ 279 (286)
.++|+|.-+||||||++.|.|.-
T Consensus 53 ~I~vvG~~saGKSSllnaL~g~~ 75 (772)
T 3zvr_A 53 QIAVVGGQSAGKSSVLENFVGRD 75 (772)
T ss_dssp EEEEEECTTTCHHHHHHHHHSSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 56999999999999999999954
No 447
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=87.94 E-value=0.22 Score=48.33 Aligned_cols=28 Identities=32% Similarity=0.494 Sum_probs=24.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHHcCCCCCC
Q psy8953 256 QLTAIMGPSGAGKSTLLNILAGLTYLNF 283 (286)
Q Consensus 256 e~~aivG~NGsGKSTLl~~l~GL~~~~~ 283 (286)
.-+.+.||.|+|||.|++++++-...+|
T Consensus 512 ~gvLl~GPPGtGKT~lAkaiA~e~~~~f 539 (806)
T 3cf2_A 512 KGVLFYGPPGCGKTLLAKAIANECQANF 539 (806)
T ss_dssp SCCEEESSTTSSHHHHHHHHHHTTTCEE
T ss_pred ceEEEecCCCCCchHHHHHHHHHhCCce
Confidence 3478999999999999999999888776
No 448
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=87.87 E-value=0.012 Score=51.29 Aligned_cols=49 Identities=14% Similarity=0.021 Sum_probs=35.5
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchh----hhcccceeeEEecCcccCCC
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSAC----IEQFLKLSCYIQQDDALRPK 50 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~----~~~~~~~~g~v~Q~~~~~~~ 50 (286)
||||+|. +|.... .+|+|.|+|.++.... +...++.++||+|++..++.
T Consensus 68 KSTLl~~l~g~~~~-~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 121 (337)
T 2qm8_A 68 KSTTIDALGSLLTA-AGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIR 121 (337)
T ss_dssp HHHHHHHHHHHHHH-TTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEE
T ss_pred HHHHHHHHHHhhhh-CCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccc
Confidence 7999999 985322 4789999998885421 12345779999999977653
No 449
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=86.99 E-value=0.24 Score=44.98 Aligned_cols=21 Identities=33% Similarity=0.241 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q psy8953 257 LTAIMGPSGAGKSTLLNILAG 277 (286)
Q Consensus 257 ~~aivG~NGsGKSTLl~~l~G 277 (286)
.++|+|.-++|||||+..|.+
T Consensus 45 ~i~iiG~vd~GKSTLi~~Ll~ 65 (467)
T 1r5b_A 45 NIVFIGHVDAGKSTLGGNILF 65 (467)
T ss_dssp EEEEEECGGGTHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHH
Confidence 479999999999999998853
No 450
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=86.77 E-value=0.24 Score=45.13 Aligned_cols=30 Identities=23% Similarity=0.377 Sum_probs=25.7
Q ss_pred eEEeCCCEEEEEcCCCCcHHHH-HHHHHcCC
Q psy8953 250 GEFKAGQLTAIMGPSGAGKSTL-LNILAGLT 279 (286)
Q Consensus 250 l~i~~Ge~~aivG~NGsGKSTL-l~~l~GL~ 279 (286)
+.+-+|+-.+|+|+.|+||||| +.+|+.-.
T Consensus 157 ~PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~ 187 (502)
T 2qe7_A 157 IPIGRGQRELIIGDRQTGKTTIAIDTIINQK 187 (502)
T ss_dssp SCCBTTCBCEEEECSSSCHHHHHHHHHHGGG
T ss_pred cccccCCEEEEECCCCCCchHHHHHHHHHhh
Confidence 4788999999999999999999 67776543
No 451
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=86.40 E-value=0.3 Score=43.98 Aligned_cols=28 Identities=14% Similarity=0.237 Sum_probs=22.8
Q ss_pred eeEEeCCCEEEEEcCCCCcHHHHHHHHH
Q psy8953 249 SGEFKAGQLTAIMGPSGAGKSTLLNILA 276 (286)
Q Consensus 249 ~l~i~~Ge~~aivG~NGsGKSTLl~~l~ 276 (286)
-.....-.++.|.|+-||||||+++.++
T Consensus 155 ~~~~~~~~v~~I~G~aGsGKTt~I~~~~ 182 (446)
T 3vkw_A 155 EPHVSSAKVVLVDGVPGCGKTKEILSRV 182 (446)
T ss_dssp BCCCCCSEEEEEEECTTSCHHHHHHHHC
T ss_pred ccccccccEEEEEcCCCCCHHHHHHHHh
Confidence 3345567789999999999999998775
No 452
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=86.03 E-value=0.38 Score=52.66 Aligned_cols=23 Identities=22% Similarity=0.407 Sum_probs=20.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHHcC
Q psy8953 256 QLTAIMGPSGAGKSTLLNILAGL 278 (286)
Q Consensus 256 e~~aivG~NGsGKSTLl~~l~GL 278 (286)
.-+.||||.||||||+.++|+..
T Consensus 924 ~gvmlvGptgsGKTt~~~~La~a 946 (2695)
T 4akg_A 924 QALILVGKAGCGKTATWKTVIDA 946 (2695)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 44899999999999999999854
No 453
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=85.97 E-value=0.28 Score=44.79 Aligned_cols=29 Identities=21% Similarity=0.391 Sum_probs=24.9
Q ss_pred eEEeCCCEEEEEcCCCCcHHHH-HHHHHcC
Q psy8953 250 GEFKAGQLTAIMGPSGAGKSTL-LNILAGL 278 (286)
Q Consensus 250 l~i~~Ge~~aivG~NGsGKSTL-l~~l~GL 278 (286)
+.+-+|+-.+|+|+.|+||||| +.+|+.-
T Consensus 157 ~PigrGQR~~I~g~~g~GKT~Lal~~I~~q 186 (510)
T 2ck3_A 157 VPIGRGQRELIIGDRQTGKTSIAIDTIINQ 186 (510)
T ss_dssp SCCBTTCBCEEEESTTSSHHHHHHHHHHHT
T ss_pred cccccCCEEEEecCCCCCchHHHHHHHHHH
Confidence 4678999999999999999999 6676644
No 454
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=85.74 E-value=0.24 Score=45.17 Aligned_cols=31 Identities=19% Similarity=0.232 Sum_probs=26.4
Q ss_pred eEEeCCCEEEEEcCCCCcHHHH-HHHHHcCCC
Q psy8953 250 GEFKAGQLTAIMGPSGAGKSTL-LNILAGLTY 280 (286)
Q Consensus 250 l~i~~Ge~~aivG~NGsGKSTL-l~~l~GL~~ 280 (286)
+.+-+|+-.+|+|+.|+||||| +.+|+.-..
T Consensus 158 ~PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~~ 189 (507)
T 1fx0_A 158 IPVGRGQRELIIGDRQTGKTAVATDTILNQQG 189 (507)
T ss_dssp SCCBTTCBCBEEESSSSSHHHHHHHHHHTCCT
T ss_pred cccccCCEEEEecCCCCCccHHHHHHHHHhhc
Confidence 4688999999999999999999 778876543
No 455
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=85.67 E-value=0.012 Score=48.71 Aligned_cols=88 Identities=8% Similarity=0.004 Sum_probs=50.2
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcc-cCCCCCHHHHHH-HHHhcCCCCCCCHHHHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDA-LRPKLTVTEAMM-IASHLKLGFKVSTQEKKDQ 77 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~-~~~~~tV~e~l~-f~~~~~~~~~~~~~~~~~~ 77 (286)
||||++. ++... .|.|.++|.+..........+.+++++|+.. ..+.+++.|++. ++...........++..+.
T Consensus 62 KTtl~~~i~~~~~---~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~ 138 (254)
T 1ixz_A 62 KTHLARAVAGEAR---VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQT 138 (254)
T ss_dssp HHHHHHHHHHHTT---CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHH
T ss_pred HHHHHHHHHHHhC---CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHH
Confidence 7999999 88543 6788998876532111223456788999864 678888888884 4433211001112233333
Q ss_pred HhhhhhhcccCCccc
Q psy8953 78 VSLELWNNFCKKKKK 92 (286)
Q Consensus 78 v~l~~~~~~~gG~kq 92 (286)
+. .....++|||+|
T Consensus 139 ~~-~ll~~l~g~~~~ 152 (254)
T 1ixz_A 139 LN-QLLVEMDGFEKD 152 (254)
T ss_dssp HH-HHHHHHHTCCTT
T ss_pred HH-HHHHHHhCCCCC
Confidence 32 134456688887
No 456
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=85.64 E-value=0.4 Score=41.85 Aligned_cols=27 Identities=19% Similarity=0.354 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCC
Q psy8953 257 LTAIMGPSGAGKSTLLNILAGLTYLNF 283 (286)
Q Consensus 257 ~~aivG~NGsGKSTLl~~l~GL~~~~~ 283 (286)
-+.++|..+|||||++|-|-=+....|
T Consensus 34 klLlLG~geSGKST~~KQmkii~~~g~ 60 (353)
T 1cip_A 34 KLLLLGAGESGKSTIVKQMKIIHEAGY 60 (353)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCC
T ss_pred eEEEEcCCCCCchhHHHHHHHhhCCCC
Confidence 458899999999999987753333333
No 457
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=85.49 E-value=0.42 Score=48.34 Aligned_cols=24 Identities=29% Similarity=0.268 Sum_probs=20.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHcC
Q psy8953 255 GQLTAIMGPSGAGKSTLLNILAGL 278 (286)
Q Consensus 255 Ge~~aivG~NGsGKSTLl~~l~GL 278 (286)
-.+++|+|+-|.|||||++.++--
T Consensus 147 ~~~v~i~G~gG~GKTtLa~~~~~~ 170 (1249)
T 3sfz_A 147 PGWVTIYGMAGCGKSVLAAEAVRD 170 (1249)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTCC
T ss_pred CCEEEEEeCCCCCHHHHHHHHhcC
Confidence 357999999999999999887643
No 458
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=85.45 E-value=0.58 Score=40.10 Aligned_cols=28 Identities=29% Similarity=0.446 Sum_probs=20.0
Q ss_pred eeEEeCCCEEEEEcCCCCcHHHHHHHHH
Q psy8953 249 SGEFKAGQLTAIMGPSGAGKSTLLNILA 276 (286)
Q Consensus 249 ~l~i~~Ge~~aivG~NGsGKSTLl~~l~ 276 (286)
+..|..-.++||.|+=|.||||..=.|+
T Consensus 42 ~~~i~~aKVIAIaGKGGVGKTTtavNLA 69 (314)
T 3fwy_A 42 ADKITGAKVFAVYGKGGIGKSTTSSNLS 69 (314)
T ss_dssp -----CCEEEEEECSTTSSHHHHHHHHH
T ss_pred ccCCCCceEEEEECCCccCHHHHHHHHH
Confidence 4467778899999999999999876554
No 459
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=84.71 E-value=0.51 Score=43.74 Aligned_cols=20 Identities=40% Similarity=0.474 Sum_probs=18.2
Q ss_pred CEEEEEcCCCCcHHHHHHHH
Q psy8953 256 QLTAIMGPSGAGKSTLLNIL 275 (286)
Q Consensus 256 e~~aivG~NGsGKSTLl~~l 275 (286)
.-+||+|+-++|||||.-.|
T Consensus 32 RNiaIiaHvdaGKTTLtE~l 51 (548)
T 3vqt_A 32 RTFAIISHPDAGKTTLTEKL 51 (548)
T ss_dssp EEEEEECCTTSSHHHHHHHH
T ss_pred ceEEEEeCCCCCHHHHHHHH
Confidence 46899999999999999877
No 460
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=84.30 E-value=0.37 Score=43.92 Aligned_cols=29 Identities=24% Similarity=0.378 Sum_probs=25.0
Q ss_pred eEEeCCCEEEEEcCCCCcHHHH-HHHHHcC
Q psy8953 250 GEFKAGQLTAIMGPSGAGKSTL-LNILAGL 278 (286)
Q Consensus 250 l~i~~Ge~~aivG~NGsGKSTL-l~~l~GL 278 (286)
+.+-+|+-.+|.|..|+||||| +.+|+--
T Consensus 157 ~PigrGQR~~Ifg~~g~GKT~l~l~~I~n~ 186 (513)
T 3oaa_A 157 IPIGRGQRELIIGDRQTGKTALAIDAIINQ 186 (513)
T ss_dssp SCCBTTCBCEEEESSSSSHHHHHHHHHHTT
T ss_pred cccccCCEEEeecCCCCCcchHHHHHHHhh
Confidence 4788999999999999999999 5777643
No 461
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=83.87 E-value=0.52 Score=47.56 Aligned_cols=22 Identities=23% Similarity=0.345 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q psy8953 257 LTAIMGPSGAGKSTLLNILAGL 278 (286)
Q Consensus 257 ~~aivG~NGsGKSTLl~~l~GL 278 (286)
.++|+|+.++|||||+..|.+-
T Consensus 298 nIvIIGhvDvGKSTLInrLt~~ 319 (1289)
T 3avx_A 298 NVGTIGHVDHGKTTLTAAITTV 319 (1289)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHhh
Confidence 4799999999999999999873
No 462
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=83.23 E-value=0.018 Score=45.96 Aligned_cols=55 Identities=13% Similarity=-0.058 Sum_probs=38.0
Q ss_pred Cchhhhh-cCCCCCCceeEEEECCeecCchhhhcccceeeEEecCcccCCCCCHHHHHHHHH
Q psy8953 1 MSIELNV-QSIRLTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIAS 61 (286)
Q Consensus 1 ~stll~~-~g~~~~~~~G~i~~~g~~~~~~~~~~~~~~~g~v~Q~~~~~~~~tV~e~l~f~~ 61 (286)
||||++. ++.. |.+.++|.++.... .......|+++|++..++.+++.++++...
T Consensus 42 KSTl~~~L~~~~-----g~~~i~~d~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 97 (200)
T 4eun_A 42 KTTIAHGVADET-----GLEFAEADAFHSPE-NIATMQRGIPLTDEDRWPWLRSLAEWMDAR 97 (200)
T ss_dssp HHHHHHHHHHHH-----CCEEEEGGGGSCHH-HHHHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh-----CCeEEcccccccHH-HHHHHhcCCCCCCcccccHHHHHHHHHHHH
Confidence 7999999 8843 78999987764310 111235799999877767777777776554
No 463
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=83.13 E-value=0.43 Score=52.26 Aligned_cols=28 Identities=25% Similarity=0.488 Sum_probs=23.8
Q ss_pred EEeCCCEEEEEcCCCCcHHHHH-HHHHcC
Q psy8953 251 EFKAGQLTAIMGPSGAGKSTLL-NILAGL 278 (286)
Q Consensus 251 ~i~~Ge~~aivG~NGsGKSTLl-~~l~GL 278 (286)
-+..|.-+.++||.|+|||+|+ +.++.+
T Consensus 1263 ~l~~~~~vLL~GPpGtGKT~la~~~l~~~ 1291 (2695)
T 4akg_A 1263 LLNSKRGIILCGPPGSGKTMIMNNALRNS 1291 (2695)
T ss_dssp HHHHTCEEEEECSTTSSHHHHHHHHHHSC
T ss_pred HHHCCCeEEEECCCCCCHHHHHHHHHhcC
Confidence 4567899999999999999999 666665
No 464
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=83.05 E-value=0.77 Score=40.20 Aligned_cols=25 Identities=20% Similarity=0.186 Sum_probs=20.7
Q ss_pred eCCCEEEEEc-CCCCcHHHHHHHHHc
Q psy8953 253 KAGQLTAIMG-PSGAGKSTLLNILAG 277 (286)
Q Consensus 253 ~~Ge~~aivG-~NGsGKSTLl~~l~G 277 (286)
.++.+++|++ ..|+||||++-.|+-
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~ 166 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAI 166 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCCCChHHHHHHHHHH
Confidence 3577889986 999999999988874
No 465
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=82.67 E-value=0.7 Score=38.82 Aligned_cols=26 Identities=35% Similarity=0.483 Sum_probs=21.3
Q ss_pred CCCEEEEEc---CCCCcHHHHHHHHHcCC
Q psy8953 254 AGQLTAIMG---PSGAGKSTLLNILAGLT 279 (286)
Q Consensus 254 ~Ge~~aivG---~NGsGKSTLl~~l~GL~ 279 (286)
.+.+++|++ +-|+||||++-.|+..+
T Consensus 33 ~~~~i~v~~~s~KGGvGKTT~a~nLA~~l 61 (298)
T 2oze_A 33 KNEAIVILNNYFKGGVGKSKLSTMFAYLT 61 (298)
T ss_dssp HCSCEEEEECCSSSSSSHHHHHHHHHHHH
T ss_pred CCcEEEEEeccCCCCchHHHHHHHHHHHH
Confidence 477888886 89999999998887543
No 466
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=81.41 E-value=0.97 Score=43.07 Aligned_cols=24 Identities=33% Similarity=0.430 Sum_probs=21.1
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHH
Q psy8953 253 KAGQLTAIMGPSGAGKSTLLNILA 276 (286)
Q Consensus 253 ~~Ge~~aivG~NGsGKSTLl~~l~ 276 (286)
.+.+.+.|.|++|||||.-.|.++
T Consensus 92 ~~nQsIiisGESGAGKTe~tK~i~ 115 (697)
T 1lkx_A 92 QENQCVIISGESGAGKTEASKKIM 115 (697)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCcEEEecCCCCCCchhhHHHHH
Confidence 467889999999999999988875
No 467
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=80.82 E-value=1.1 Score=42.17 Aligned_cols=22 Identities=32% Similarity=0.573 Sum_probs=18.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHH
Q psy8953 255 GQLTAIMGPSGAGKSTLLNILA 276 (286)
Q Consensus 255 Ge~~aivG~NGsGKSTLl~~l~ 276 (286)
+.++.|.||-|+||||++..+.
T Consensus 195 ~~~~li~GppGTGKT~~~~~~i 216 (624)
T 2gk6_A 195 RPLSLIQGPPGTGKTVTSATIV 216 (624)
T ss_dssp CSEEEEECCTTSCHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHH
Confidence 5689999999999999876654
No 468
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=80.72 E-value=0.78 Score=50.90 Aligned_cols=25 Identities=32% Similarity=0.618 Sum_probs=21.0
Q ss_pred EeCCCEEEEEcCCCCcHHHHHHHHHcC
Q psy8953 252 FKAGQLTAIMGPSGAGKSTLLNILAGL 278 (286)
Q Consensus 252 i~~Ge~~aivG~NGsGKSTLl~~l~GL 278 (286)
++.| +-||||.||||||..++|+.-
T Consensus 905 vRhG--vmlVGp~gsGKTt~~~~L~~a 929 (3245)
T 3vkg_A 905 INHG--VMMVGPSGGGKTTSWEVYLEA 929 (3245)
T ss_dssp TCSE--EEEECSSSSSHHHHHHHHHHH
T ss_pred heee--EEEECCCCCCHHHHHHHHHHH
Confidence 5555 789999999999999998753
No 469
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=80.24 E-value=0.93 Score=40.25 Aligned_cols=20 Identities=25% Similarity=0.479 Sum_probs=17.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q psy8953 257 LTAIMGPSGAGKSTLLNILA 276 (286)
Q Consensus 257 ~~aivG~NGsGKSTLl~~l~ 276 (286)
-+.|+|.-.|||||++|-|=
T Consensus 42 klLLLG~geSGKSTi~KQmk 61 (402)
T 1azs_C 42 RLLLLGAGESGKSTIVKQMR 61 (402)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred eEEEecCCCCchhhHHHHHH
Confidence 46899999999999998773
No 470
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=80.02 E-value=1.7 Score=32.53 Aligned_cols=35 Identities=9% Similarity=0.185 Sum_probs=27.5
Q ss_pred cCCCcchHHHHHHHHHHHHHHhCCCE-EEEEEcCCCH
Q psy8953 93 KKRGLDSSSCSQCVSLLANLAKQGRT-VVATIHTPSA 128 (286)
Q Consensus 93 ptsgLD~~~~~~~~~~l~~l~~~g~t-ii~~~h~~~~ 128 (286)
|++ +|...+..+++++..+.++|.+ +|++.|.+..
T Consensus 92 ~~~-~~~~~~~~l~~li~~~~~~g~~~iiits~~~p~ 127 (149)
T 2kjq_A 92 VEK-LGNEEQALLFSIFNRFRNSGKGFLLLGSEYTPQ 127 (149)
T ss_dssp TTC-CCSHHHHHHHHHHHHHHHHTCCEEEEEESSCTT
T ss_pred ccc-cChHHHHHHHHHHHHHHHcCCcEEEEECCCCHH
Confidence 665 6666688999999999888888 8888886543
No 471
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=79.91 E-value=0.13 Score=47.25 Aligned_cols=24 Identities=33% Similarity=0.513 Sum_probs=16.8
Q ss_pred HHHHHHHHH---HhC-CCEEEEEEcCCC
Q psy8953 104 QCVSLLANL---AKQ-GRTVVATIHTPS 127 (286)
Q Consensus 104 ~~~~~l~~l---~~~-g~tii~~~h~~~ 127 (286)
++...+.+| .+. |+++|+++|+|+
T Consensus 316 ~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 316 KVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp HHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred HHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 344455544 343 889999999997
No 472
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=79.34 E-value=1.2 Score=43.04 Aligned_cols=24 Identities=33% Similarity=0.404 Sum_probs=21.2
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHH
Q psy8953 253 KAGQLTAIMGPSGAGKSTLLNILA 276 (286)
Q Consensus 253 ~~Ge~~aivG~NGsGKSTLl~~l~ 276 (286)
++.+.+.|.|++|||||.-.|.++
T Consensus 169 ~~nQsIiiSGESGAGKTe~tK~im 192 (783)
T 4db1_A 169 RENQSILITGESGAGKTVNTKRVI 192 (783)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCceEEEeCCCCCCCchHHHHHH
Confidence 468899999999999999888775
No 473
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=79.34 E-value=0.71 Score=36.36 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=18.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHH
Q psy8953 254 AGQLTAIMGPSGAGKSTLLNILA 276 (286)
Q Consensus 254 ~Ge~~aivG~NGsGKSTLl~~l~ 276 (286)
.|+.+.|.+|.|+|||..+-.++
T Consensus 47 ~~~~~li~~~tGsGKT~~~~~~~ 69 (216)
T 3b6e_A 47 EGKNIIICLPTGSGKTRVAVYIA 69 (216)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHH
T ss_pred cCCCEEEEcCCCCCHHHHHHHHH
Confidence 46678999999999999876554
No 474
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=79.26 E-value=1.3 Score=42.76 Aligned_cols=24 Identities=33% Similarity=0.394 Sum_probs=21.2
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHH
Q psy8953 253 KAGQLTAIMGPSGAGKSTLLNILA 276 (286)
Q Consensus 253 ~~Ge~~aivG~NGsGKSTLl~~l~ 276 (286)
++.+.+.|.|++|||||.-.|.++
T Consensus 170 ~~nQsIiisGESGAGKTe~tK~i~ 193 (770)
T 1w9i_A 170 RQNQSLLITGESGAGKTENTKKVI 193 (770)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred cCCcEEEEecCCCCcchHHHHHHH
Confidence 468889999999999999988875
No 475
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=79.24 E-value=1.1 Score=36.43 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=18.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHH
Q psy8953 254 AGQLTAIMGPSGAGKSTLLNILA 276 (286)
Q Consensus 254 ~Ge~~aivG~NGsGKSTLl~~l~ 276 (286)
.+.-+.|+|+.|+|||.++..++
T Consensus 107 ~~~~~ll~~~tG~GKT~~a~~~~ 129 (237)
T 2fz4_A 107 VDKRGCIVLPTGSGKTHVAMAAI 129 (237)
T ss_dssp TTSEEEEEESSSTTHHHHHHHHH
T ss_pred hCCCEEEEeCCCCCHHHHHHHHH
Confidence 34558899999999999887654
No 476
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=79.06 E-value=1.2 Score=43.02 Aligned_cols=24 Identities=33% Similarity=0.416 Sum_probs=21.2
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHH
Q psy8953 253 KAGQLTAIMGPSGAGKSTLLNILA 276 (286)
Q Consensus 253 ~~Ge~~aivG~NGsGKSTLl~~l~ 276 (286)
.+.+.+.|.|++|||||.-.|.++
T Consensus 138 ~~nQsIiiSGESGAGKTe~tK~i~ 161 (784)
T 2v26_A 138 KLSQSIIVSGESGAGKTENTKFVL 161 (784)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCcEEEEcCCCCCCceehHHHHH
Confidence 467899999999999999988875
No 477
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=78.41 E-value=1.3 Score=42.85 Aligned_cols=24 Identities=29% Similarity=0.354 Sum_probs=21.3
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHH
Q psy8953 253 KAGQLTAIMGPSGAGKSTLLNILA 276 (286)
Q Consensus 253 ~~Ge~~aivG~NGsGKSTLl~~l~ 276 (286)
.+.+.+.|.|++|||||.-.|.++
T Consensus 154 ~~nQsIiisGESGAGKTe~tK~i~ 177 (795)
T 1w7j_A 154 ERNQSIIVSGESGAGKTVSAKYAM 177 (795)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCeEEEEeCCCCCCcchHHHHHH
Confidence 467889999999999999988875
No 478
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=78.10 E-value=1.6 Score=36.96 Aligned_cols=25 Identities=24% Similarity=0.422 Sum_probs=20.3
Q ss_pred CCCEEEEEcC-CCCcHHHHHHHHHcC
Q psy8953 254 AGQLTAIMGP-SGAGKSTLLNILAGL 278 (286)
Q Consensus 254 ~Ge~~aivG~-NGsGKSTLl~~l~GL 278 (286)
++.+++|+|. -|+||||++-.|+-.
T Consensus 103 ~~kvI~vts~kgG~GKTtva~nLA~~ 128 (299)
T 3cio_A 103 ENNILMITGATPDSGKTFVSSTLAAV 128 (299)
T ss_dssp SCCEEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHH
Confidence 4678999997 589999998887743
No 479
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=77.89 E-value=1.1 Score=35.01 Aligned_cols=18 Identities=22% Similarity=0.254 Sum_probs=15.4
Q ss_pred CCCEEEEEcCCCCcHHHH
Q psy8953 254 AGQLTAIMGPSGAGKSTL 271 (286)
Q Consensus 254 ~Ge~~aivG~NGsGKSTL 271 (286)
.|.-+.+.+|.|+|||..
T Consensus 37 ~~~~~li~~~TGsGKT~~ 54 (207)
T 2gxq_A 37 EGKDLIGQARTGTGKTLA 54 (207)
T ss_dssp TTCCEEEECCTTSCHHHH
T ss_pred CCCCEEEECCCCChHHHH
Confidence 466789999999999985
No 480
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=77.71 E-value=1.6 Score=42.43 Aligned_cols=22 Identities=32% Similarity=0.573 Sum_probs=18.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHH
Q psy8953 255 GQLTAIMGPSGAGKSTLLNILA 276 (286)
Q Consensus 255 Ge~~aivG~NGsGKSTLl~~l~ 276 (286)
+.++.|.||-|+||||++..+.
T Consensus 371 ~~~~lI~GppGTGKT~ti~~~i 392 (800)
T 2wjy_A 371 RPLSLIQGPPGTGKTVTSATIV 392 (800)
T ss_dssp SSEEEEECCTTSCHHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHHH
Confidence 5688999999999999876654
No 481
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=77.69 E-value=1.4 Score=36.71 Aligned_cols=35 Identities=17% Similarity=0.279 Sum_probs=28.2
Q ss_pred cCC--CcchHHH---HHHHHHHHHHHh-CCCEEEEEEcCCC
Q psy8953 93 KKR--GLDSSSC---SQCVSLLANLAK-QGRTVVATIHTPS 127 (286)
Q Consensus 93 pts--gLD~~~~---~~~~~~l~~l~~-~g~tii~~~h~~~ 127 (286)
|++ ++|.... .+++..|+++++ .|.|||++.|...
T Consensus 142 ~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~i~H~~~ 182 (279)
T 1nlf_A 142 LRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHASK 182 (279)
T ss_dssp GGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC--
T ss_pred HHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEEEecCCC
Confidence 888 8998544 888999999975 5999999999975
No 482
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=77.67 E-value=1.1 Score=42.83 Aligned_cols=21 Identities=24% Similarity=0.515 Sum_probs=18.3
Q ss_pred eCCCEEEEEcCCCCcHHHHHH
Q psy8953 253 KAGQLTAIMGPSGAGKSTLLN 273 (286)
Q Consensus 253 ~~Ge~~aivG~NGsGKSTLl~ 273 (286)
..|+.+.|.||.||||||.+-
T Consensus 44 ~~~~~~lv~apTGsGKT~~~~ 64 (715)
T 2va8_A 44 LEGNRLLLTSPTGSGKTLIAE 64 (715)
T ss_dssp TTTCCEEEECCTTSCHHHHHH
T ss_pred cCCCcEEEEcCCCCcHHHHHH
Confidence 358899999999999999874
No 483
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=77.13 E-value=0.81 Score=39.90 Aligned_cols=56 Identities=16% Similarity=0.038 Sum_probs=36.7
Q ss_pred cCCCcchHHHHHHHHHHHHHHhC-CCEEEEEEcCCCHHHHHHhhhHhhhcCCeeecccChh
Q psy8953 93 KKRGLDSSSCSQCVSLLANLAKQ-GRTVVATIHTPSALLFEKFDSLYALAKGHCIYRGSIS 152 (286)
Q Consensus 93 ptsgLD~~~~~~~~~~l~~l~~~-g~tii~~~h~~~~~~~~~~d~v~~l~~G~i~~~g~~~ 152 (286)
|+.++|+..+..+.+.|+++.++ +.+|+++.|- . ....+++++.++++ ++..+++.
T Consensus 295 ~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~-~~~r~~~~i~~i~~--~l~~~~~~ 351 (365)
T 1lw7_A 295 LRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-S-YLDRYNQVKAVIEK--VLNEEEIS 351 (365)
T ss_dssp ------CCSHHHHHHHHHHHHHGGGCCCEEEECS-S-HHHHHHHHHHHHHH--HTSCCCCS
T ss_pred CcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-C-HHHHHHHHHHHHHH--Hhcccchh
Confidence 67789999999999999998664 8999998865 3 34467888877765 44444433
No 484
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=76.78 E-value=1.3 Score=42.11 Aligned_cols=18 Identities=22% Similarity=0.396 Sum_probs=16.6
Q ss_pred CCCEEEEEcCCCCcHHHH
Q psy8953 254 AGQLTAIMGPSGAGKSTL 271 (286)
Q Consensus 254 ~Ge~~aivG~NGsGKSTL 271 (286)
.|+.+.++||.|||||+.
T Consensus 154 ~rk~vlv~apTGSGKT~~ 171 (677)
T 3rc3_A 154 QRKIIFHSGPTNSGKTYH 171 (677)
T ss_dssp CCEEEEEECCTTSSHHHH
T ss_pred CCCEEEEEcCCCCCHHHH
Confidence 688999999999999994
No 485
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=76.14 E-value=1.6 Score=43.53 Aligned_cols=25 Identities=32% Similarity=0.387 Sum_probs=21.6
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHHc
Q psy8953 253 KAGQLTAIMGPSGAGKSTLLNILAG 277 (286)
Q Consensus 253 ~~Ge~~aivG~NGsGKSTLl~~l~G 277 (286)
...+.+.|.|++|||||.-.|.++.
T Consensus 142 ~~nQsIiiSGESGAGKTestK~im~ 166 (1052)
T 4anj_A 142 KLSQSIIVSGESGAGKTENTKFVLR 166 (1052)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCceEEEecCCCCCHHHHHHHHHH
Confidence 4578899999999999999988763
No 486
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=75.85 E-value=2.3 Score=35.42 Aligned_cols=24 Identities=46% Similarity=0.390 Sum_probs=19.6
Q ss_pred CCCEEEEEcC-CCCcHHHHHHHHHc
Q psy8953 254 AGQLTAIMGP-SGAGKSTLLNILAG 277 (286)
Q Consensus 254 ~Ge~~aivG~-NGsGKSTLl~~l~G 277 (286)
+..+++|++. .|+||||++-.|+-
T Consensus 81 ~~kvI~vts~kgG~GKTt~a~nLA~ 105 (271)
T 3bfv_A 81 AVQSIVITSEAPGAGKSTIAANLAV 105 (271)
T ss_dssp CCCEEEEECSSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHH
Confidence 3578999986 68999999888764
No 487
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=75.70 E-value=1.6 Score=43.35 Aligned_cols=24 Identities=29% Similarity=0.332 Sum_probs=21.2
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHH
Q psy8953 253 KAGQLTAIMGPSGAGKSTLLNILA 276 (286)
Q Consensus 253 ~~Ge~~aivG~NGsGKSTLl~~l~ 276 (286)
.+.+.+.|.|++|||||.-.|.++
T Consensus 144 ~~~QsIiisGESGAGKTe~~K~i~ 167 (995)
T 2ycu_A 144 REDQSILCTGESGAGKTENTKKVI 167 (995)
T ss_dssp CCCEEEEEECBTTSSHHHHHHHHH
T ss_pred CCCcEEEecCCCCCCchhhHHHHH
Confidence 467889999999999999988875
No 488
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=75.52 E-value=1.5 Score=42.80 Aligned_cols=24 Identities=33% Similarity=0.408 Sum_probs=20.8
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHH
Q psy8953 253 KAGQLTAIMGPSGAGKSTLLNILA 276 (286)
Q Consensus 253 ~~Ge~~aivG~NGsGKSTLl~~l~ 276 (286)
.+.+.+.|.|++|||||.-.|.++
T Consensus 167 ~~nQsIiiSGESGAGKTe~tK~i~ 190 (837)
T 1kk8_A 167 RENQSCLITGESGAGKTENTKKVI 190 (837)
T ss_dssp TSEEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCcEEEEeCCCCCCchhhHHHHH
Confidence 467888999999999999988775
No 489
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=75.29 E-value=1.7 Score=43.37 Aligned_cols=24 Identities=33% Similarity=0.394 Sum_probs=21.1
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHH
Q psy8953 253 KAGQLTAIMGPSGAGKSTLLNILA 276 (286)
Q Consensus 253 ~~Ge~~aivG~NGsGKSTLl~~l~ 276 (286)
.+.+.+.|.|++|||||.-.|.++
T Consensus 170 ~~~QsIiisGESGAGKTe~~K~i~ 193 (1010)
T 1g8x_A 170 RQNQSLLITGESGAGKTENTKKVI 193 (1010)
T ss_dssp TCCEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCeEEEEeCCCCCCcchHHHHHH
Confidence 467889999999999999988875
No 490
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=73.95 E-value=2.2 Score=34.23 Aligned_cols=18 Identities=22% Similarity=0.287 Sum_probs=15.6
Q ss_pred CCCEEEEEcCCCCcHHHH
Q psy8953 254 AGQLTAIMGPSGAGKSTL 271 (286)
Q Consensus 254 ~Ge~~aivG~NGsGKSTL 271 (286)
.|+-+.+.+|.|+|||..
T Consensus 61 ~~~~~li~a~TGsGKT~~ 78 (236)
T 2pl3_A 61 QGKDVLGAAKTGSGKTLA 78 (236)
T ss_dssp TTCCEEEECCTTSCHHHH
T ss_pred CCCCEEEEeCCCCcHHHH
Confidence 467789999999999984
No 491
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=73.93 E-value=2 Score=43.18 Aligned_cols=24 Identities=29% Similarity=0.354 Sum_probs=21.2
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHH
Q psy8953 253 KAGQLTAIMGPSGAGKSTLLNILA 276 (286)
Q Consensus 253 ~~Ge~~aivG~NGsGKSTLl~~l~ 276 (286)
...+.+.|.|++|||||.-.|.++
T Consensus 154 ~~~QsIiisGESGAGKTe~~K~i~ 177 (1080)
T 2dfs_A 154 ERNQSIIVSGESGAGKTVSAKYAM 177 (1080)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCcEEEEcCCCCCCccchHHHHH
Confidence 468899999999999999988875
No 492
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=73.75 E-value=2.2 Score=41.40 Aligned_cols=22 Identities=32% Similarity=0.573 Sum_probs=18.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHH
Q psy8953 255 GQLTAIMGPSGAGKSTLLNILA 276 (286)
Q Consensus 255 Ge~~aivG~NGsGKSTLl~~l~ 276 (286)
+.++.|.||-|+||||++..+.
T Consensus 375 ~~~~lI~GppGTGKT~~i~~~i 396 (802)
T 2xzl_A 375 RPLSLIQGPPGTGKTVTSATIV 396 (802)
T ss_dssp CSEEEEECSTTSSHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHH
Confidence 5689999999999999876553
No 493
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=73.02 E-value=1.8 Score=34.38 Aligned_cols=18 Identities=28% Similarity=0.361 Sum_probs=15.3
Q ss_pred CCCEEEEEcCCCCcHHHH
Q psy8953 254 AGQLTAIMGPSGAGKSTL 271 (286)
Q Consensus 254 ~Ge~~aivG~NGsGKSTL 271 (286)
.|.-+.+.+|.|+|||..
T Consensus 50 ~~~~~lv~~pTGsGKT~~ 67 (224)
T 1qde_A 50 EGHDVLAQAQSGTGKTGT 67 (224)
T ss_dssp TTCCEEEECCTTSSHHHH
T ss_pred cCCCEEEECCCCCcHHHH
Confidence 456689999999999975
No 494
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=72.57 E-value=1.8 Score=34.48 Aligned_cols=19 Identities=21% Similarity=0.352 Sum_probs=15.9
Q ss_pred CCCEEEEEcCCCCcHHHHH
Q psy8953 254 AGQLTAIMGPSGAGKSTLL 272 (286)
Q Consensus 254 ~Ge~~aivG~NGsGKSTLl 272 (286)
.|+-+.+.+|.|||||...
T Consensus 56 ~~~~~l~~apTGsGKT~~~ 74 (228)
T 3iuy_A 56 QGIDLIVVAQTGTGKTLSY 74 (228)
T ss_dssp TTCCEEEECCTTSCHHHHH
T ss_pred CCCCEEEECCCCChHHHHH
Confidence 5677899999999999743
No 495
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=72.53 E-value=2.2 Score=33.28 Aligned_cols=18 Identities=28% Similarity=0.346 Sum_probs=15.1
Q ss_pred CCCEEEEEcCCCCcHHHH
Q psy8953 254 AGQLTAIMGPSGAGKSTL 271 (286)
Q Consensus 254 ~Ge~~aivG~NGsGKSTL 271 (286)
.|+-+.+.+|.|+|||..
T Consensus 39 ~~~~~lv~apTGsGKT~~ 56 (206)
T 1vec_A 39 SGRDILARAKNGTGKSGA 56 (206)
T ss_dssp TTCCEEEECCSSSTTHHH
T ss_pred cCCCEEEECCCCCchHHH
Confidence 466789999999999963
No 496
>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Probab=72.38 E-value=1.8 Score=36.67 Aligned_cols=30 Identities=23% Similarity=0.190 Sum_probs=23.4
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHHcCCCCCC
Q psy8953 251 EFKAGQLTAIMGPSGAGKSTLLNILAGLTYLNF 283 (286)
Q Consensus 251 ~i~~Ge~~aivG~NGsGKSTLl~~l~GL~~~~~ 283 (286)
....|..+.|+|| ||+||++.|.--.+.+|
T Consensus 101 ~~~~~r~ivl~GP---gK~tl~~~L~~~~~~~~ 130 (295)
T 1kjw_A 101 EVHYARPIIILGP---TKDRANDDLLSEFPDKF 130 (295)
T ss_dssp ECCSCCCEEEEST---THHHHHHHHHHHCTTTE
T ss_pred cCCCCCEEEEECC---CHHHHHHHHHhhCccce
Confidence 3467899999998 79999999876554334
No 497
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=72.09 E-value=1.8 Score=36.41 Aligned_cols=21 Identities=24% Similarity=0.476 Sum_probs=17.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHH
Q psy8953 254 AGQLTAIMGPSGAGKSTLLNI 274 (286)
Q Consensus 254 ~Ge~~aivG~NGsGKSTLl~~ 274 (286)
.|+.+.|.+|.|+|||..+-.
T Consensus 30 ~~~~~lv~~~TGsGKT~~~~~ 50 (337)
T 2z0m_A 30 QGKNVVVRAKTGSGKTAAYAI 50 (337)
T ss_dssp TTCCEEEECCTTSSHHHHHHH
T ss_pred cCCCEEEEcCCCCcHHHHHHH
Confidence 467789999999999986543
No 498
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=71.92 E-value=2.8 Score=35.22 Aligned_cols=25 Identities=16% Similarity=0.239 Sum_probs=19.8
Q ss_pred CCCEEEEEcC-CCCcHHHHHHHHHcC
Q psy8953 254 AGQLTAIMGP-SGAGKSTLLNILAGL 278 (286)
Q Consensus 254 ~Ge~~aivG~-NGsGKSTLl~~l~GL 278 (286)
++.+++|++. -|.||||++-.|+-.
T Consensus 91 ~~kvI~vts~kgG~GKTtva~nLA~~ 116 (286)
T 3la6_A 91 QNNVLMMTGVSPSIGMTFVCANLAAV 116 (286)
T ss_dssp TCCEEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHH
Confidence 4578889886 489999998887643
No 499
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=71.88 E-value=2.3 Score=37.43 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=19.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHHcC
Q psy8953 256 QLTAIMGPSGAGKSTLLNILAGL 278 (286)
Q Consensus 256 e~~aivG~NGsGKSTLl~~l~GL 278 (286)
-.+.|.|+.|+||+++++.|-.+
T Consensus 161 ~~vli~Ge~GtGK~~lAr~ih~~ 183 (387)
T 1ny5_A 161 CPVLITGESGVGKEVVARLIHKL 183 (387)
T ss_dssp SCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEecCCCcCHHHHHHHHHHh
Confidence 34589999999999999998654
No 500
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=71.80 E-value=1.1 Score=49.69 Aligned_cols=37 Identities=30% Similarity=0.473 Sum_probs=26.9
Q ss_pred eeEEeCCCEEEEEcCCCCcHHHHHH-HHHcC-----CCCCCCC
Q psy8953 249 SGEFKAGQLTAIMGPSGAGKSTLLN-ILAGL-----TYLNFSK 285 (286)
Q Consensus 249 ~l~i~~Ge~~aivG~NGsGKSTLl~-~l~GL-----~~~~~~~ 285 (286)
+.-+..|.-+.++||.|+|||++++ .|+.+ ..+|||.
T Consensus 1298 ~~ll~~~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~ 1340 (3245)
T 3vkg_A 1298 HAWLSEHRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSS 1340 (3245)
T ss_dssp HHHHHTTCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCT
T ss_pred HHHHHCCCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeC
Confidence 3345678999999999999997764 45555 3356663
Done!