RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8953
(286 letters)
>gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP)
Family protein. [Transport and binding proteins,
Other].
Length = 617
Score = 140 bits (355), Expect = 7e-38
Identities = 67/210 (31%), Positives = 101/210 (48%), Gaps = 43/210 (20%)
Query: 5 LNVQSIRLTGS---SGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIAS 61
+N + R SG +L+NG + ++ +S Y+QQDD P LTV E +M +
Sbjct: 68 MNALAFRSPKGVKGSGSVLLNGMPIDA---KEMRAISAYVQQDDLFIPTLTVREHLMFQA 124
Query: 62 HLKLGFKVSTQEKK---DQVSLELWNNFCKKKK-------------KKKR---------- 95
HL++ +V+ +EK+ D+V L C + ++KR
Sbjct: 125 HLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTD 184
Query: 96 -----------GLDSSSCSQCVSLLANLAKQGRTVVATIHTPSALLFEKFDSLYALAKGH 144
GLDS V +L LA++G+T++ TIH PS+ LFE FD + +A+G
Sbjct: 185 PPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGR 244
Query: 145 CIYRGSISRLVPHLASLGLPCPAYHNPADF 174
Y GS + VP + LG PCP +NPADF
Sbjct: 245 VAYLGSPDQAVPFFSDLGHPCPENYNPADF 274
Score = 90.5 bits (225), Expect = 2e-20
Identities = 31/69 (44%), Positives = 45/69 (65%)
Query: 176 NLAKQGRTVVATIHTPSALLFEKFDSLYALAKGHCIYRGSISRLVPHLASLGLPCPAYHN 235
LA++G+T++ TIH PS+ LFE FD + +A+G Y GS + VP + LG PCP +N
Sbjct: 211 GLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYN 270
Query: 236 PADFLNKEI 244
PADF + +
Sbjct: 271 PADFYVQVL 279
Score = 64.7 bits (158), Expect = 9e-12
Identities = 20/36 (55%), Positives = 26/36 (72%)
Query: 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAG 277
K +L +SG K G+L A+MG SGAGK+TL+N LA
Sbjct: 38 KHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAF 73
>gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter
subfamily G of the ATP-binding cassette superfamily.
ABCG transporters are involved in eye pigment (EP)
precursor transport, regulation of lipid-trafficking
mechanisms, and pleiotropic drug resistance (DR). DR is
a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. Compared to other members of the
ABC transporter subfamilies, the ABCG transporter family
is composed of proteins that have an ATP-binding
cassette domain at the N-terminus and a TM
(transmembrane) domain at the C-terminus.
Length = 194
Score = 115 bits (291), Expect = 1e-31
Identities = 64/153 (41%), Positives = 87/153 (56%), Gaps = 18/153 (11%)
Query: 5 LNVQSIRLTGS--SGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASH 62
LN + R TG SG++L+NG+ F K+ Y+ QDD L P LTV E +M A+
Sbjct: 52 LNALAGRRTGLGVSGEVLINGRPLD---KRSFRKIIGYVPQDDILHPTLTVRETLMFAAK 108
Query: 63 LKLGFKVSTQEKKDQVS--LELWNN----FCKKKKKKKRGLDSSSCSQCVSLLANLAKQG 116
L+ +S E+K +VS LEL +N F + GLDSSS Q +SLL LA G
Sbjct: 109 LR---GLSGGERK-RVSIALELVSNPSLLFLDEPT---SGLDSSSALQVMSLLRRLADTG 161
Query: 117 RTVVATIHTPSALLFEKFDSLYALAKGHCIYRG 149
RT++ +IH PS+ +FE FD L L++G IY G
Sbjct: 162 RTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194
Score = 71.4 bits (176), Expect = 5e-15
Identities = 26/36 (72%), Positives = 31/36 (86%)
Query: 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAG 277
K++L +SG+ K G+LTAIMGPSGAGKSTLLN LAG
Sbjct: 22 KQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAG 57
Score = 61.4 bits (150), Expect = 2e-11
Identities = 19/39 (48%), Positives = 26/39 (66%)
Query: 176 NLAKQGRTVVATIHTPSALLFEKFDSLYALAKGHCIYRG 214
LA GRT++ +IH PS+ +FE FD L L++G IY G
Sbjct: 156 RLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194
>gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug
resistance-like (PDR) subfamily G of ATP-binding
cassette transporters. The pleiotropic drug resistance
(PDR) is a well-described phenomenon occurring in fungi
and shares several similarities with processes in
bacteria and higher eukaryotes. This PDR subfamily
represents domain I of its (ABC-IM)2 organization. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds
including sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 192
Score = 90.0 bits (224), Expect = 7e-22
Identities = 52/152 (34%), Positives = 78/152 (51%), Gaps = 16/152 (10%)
Query: 5 LNVQSIRLTGS--SGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASH 62
L+V + R T +G+IL+NG+ + F + + Y++Q D P LTV EA+ ++
Sbjct: 50 LDVLAGRKTAGVITGEILINGRPLD----KNFQRSTGYVEQQDVHSPNLTVREALRFSAL 105
Query: 63 LKLGFKVSTQEKKDQVSLELWNN----FCKKKKKKKRGLDSSSCSQCVSLLANLAKQGRT 118
L+ G V Q K+ + +EL F + GLDS + V L LA G+
Sbjct: 106 LR-GLSV-EQRKRLTIGVELAAKPSILFLDEPTS---GLDSQAAYNIVRFLKKLADSGQA 160
Query: 119 VVATIHTPSALLFEKFDSLYALAK-GHCIYRG 149
++ TIH PSA +FEKFD L L + G +Y G
Sbjct: 161 ILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192
Score = 64.6 bits (158), Expect = 2e-12
Identities = 22/37 (59%), Positives = 30/37 (81%)
Query: 241 NKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAG 277
+++L+ ISG K G LTA+MG SGAGK+TLL++LAG
Sbjct: 19 KRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAG 55
Score = 56.5 bits (137), Expect = 9e-10
Identities = 19/40 (47%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 176 NLAKQGRTVVATIHTPSALLFEKFDSLYALAK-GHCIYRG 214
LA G+ ++ TIH PSA +FEKFD L L + G +Y G
Sbjct: 153 KLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192
>gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional.
Length = 659
Score = 87.2 bits (216), Expect = 3e-19
Identities = 64/211 (30%), Positives = 105/211 (49%), Gaps = 42/211 (19%)
Query: 2 SIELNVQSIRLTGSS--GKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMI 59
S LN + R+ G++ G IL N RK +Q LK + ++ QDD L P LTV E ++
Sbjct: 108 STLLNALAGRIQGNNFTGTILANN--RKPT--KQILKRTGFVTQDDILYPHLTVRETLVF 163
Query: 60 ASHLKLGFKVSTQEK---KDQVSLELW----------NNFCK--KKKKKKR--------- 95
S L+L ++ QEK + V EL N+F + ++KR
Sbjct: 164 CSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLI 223
Query: 96 ------------GLDSSSCSQCVSLLANLAKQGRTVVATIHTPSALLFEKFDSLYALAKG 143
GLD+++ + V L +LA++G+T+V ++H PS+ +++ FDS+ L++G
Sbjct: 224 NPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEG 283
Query: 144 HCIYRGSISRLVPHLASLGLPCPAYHNPADF 174
C++ G S + + S+G NPADF
Sbjct: 284 RCLFFGKGSDAMAYFESVGFSPSFPMNPADF 314
Score = 51.0 bits (122), Expect = 3e-07
Identities = 22/52 (42%), Positives = 31/52 (59%)
Query: 226 LGLPCPAYHNPADFLNKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAG 277
LG + IL+G++G G++ A++GPSG+GKSTLLN LAG
Sbjct: 65 LGHKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAG 116
>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein.
[Transport and binding proteins, Other].
Length = 1394
Score = 87.5 bits (217), Expect = 3e-19
Identities = 64/215 (29%), Positives = 97/215 (45%), Gaps = 49/215 (22%)
Query: 5 LNVQSIRLTG---SSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIAS 61
LNV + R+T + G LVNG+ S+ F + Y+QQ D P TV E++ ++
Sbjct: 806 LNVLAERVTTGVITGGDRLVNGRPLDSS----FQRSIGYVQQQDLHLPTSTVRESLRFSA 861
Query: 62 HLKLGFKVSTQEKKDQVS-----LELWN-------------NFCKKKK---------KKK 94
+L+ VS EK + V LE+ + N ++K+ K K
Sbjct: 862 YLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPK 921
Query: 95 ---------RGLDSSSCSQCVSLLANLAKQGRTVVATIHTPSALLFEKFDSLYALAKG-H 144
GLDS + L+ LA G+ ++ TIH PSA+LFE+FD L L KG
Sbjct: 922 LLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQ 981
Query: 145 CIYRGSISR----LVPHLASLGLP-CPAYHNPADF 174
+Y G + ++ + G P CP NPA++
Sbjct: 982 TVYFGDLGENSHTIINYFEKHGAPKCPEDANPAEW 1016
Score = 56.7 bits (137), Expect = 5e-09
Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 176 NLAKQGRTVVATIHTPSALLFEKFDSLYALAKG-HCIYRGSISR----LVPHLASLGLP- 229
LA G+ ++ TIH PSA+LFE+FD L L KG +Y G + ++ + G P
Sbjct: 947 KLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSHTIINYFEKHGAPK 1006
Query: 230 CPAYHNPADFL 240
CP NPA+++
Sbjct: 1007 CPEDANPAEWM 1017
Score = 56.7 bits (137), Expect = 5e-09
Identities = 21/34 (61%), Positives = 26/34 (76%)
Query: 244 ILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAG 277
IL+ + G K G LTA+MG SGAGK+TLLN+LA
Sbjct: 778 ILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAE 811
Score = 47.8 bits (114), Expect = 3e-06
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Query: 95 RGLDSSSCSQCVSLL---ANLAKQGRTVVATIHTPSALLFEKFDSLYALAKGHCIYRGSI 151
RGLDS++ + + L AN+ T + I+ S +E FD + L +G+ IY G
Sbjct: 238 RGLDSATALEFIRALKTSANILDT--TPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPA 295
Query: 152 SRLVPHLASLGLPCPAYHNPADF 174
+ + +G CP ADF
Sbjct: 296 DKAKQYFEKMGFKCPDRQTTADF 318
Score = 41.6 bits (98), Expect = 4e-04
Identities = 16/39 (41%), Positives = 23/39 (58%)
Query: 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTY 280
+IL + G K G+LT ++G G+G STLL +A T
Sbjct: 74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTD 112
Score = 40.1 bits (94), Expect = 0.001
Identities = 18/58 (31%), Positives = 27/58 (46%)
Query: 183 TVVATIHTPSALLFEKFDSLYALAKGHCIYRGSISRLVPHLASLGLPCPAYHNPADFL 240
T + I+ S +E FD + L +G+ IY G + + +G CP ADFL
Sbjct: 262 TPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCPDRQTTADFL 319
>gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG
transporter subfamily. The White subfamily represents
ABC transporters homologous to the Drosophila white
gene, which acts as a dimeric importer for eye pigment
precursors. The eye pigmentation of Drosophila is
developed from the synthesis and deposition in the cells
of red pigments, which are synthesized from guanine, and
brown pigments, which are synthesized from tryptophan.
The pigment precursors are encoded by the white, brown,
and scarlet genes, respectively. Evidence from genetic
and biochemical studies suggest that the White and Brown
proteins function as heterodimers to import guanine,
while the White and Scarlet proteins function to import
tryptophan. However, a recent study also suggests that
White may be involved in the transport of a metabolite,
such as 3-hydroxykynurenine, across intracellular
membranes. Mammalian ABC transporters belonging to the
White subfamily (ABCG1, ABCG5, and ABCG8) have been
shown to be involved in the regulation of
lipid-trafficking mechanisms in macrophages,
hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8),
the human homolog of the Drosophila white gene is
induced in monocyte-derived macrophages during
cholesterol influx mediated by acetylated low-density
lipoprotein. It is possible that human ABCG1 forms
heterodimers with several heterologous partners.
Length = 226
Score = 76.2 bits (188), Expect = 2e-16
Identities = 57/180 (31%), Positives = 79/180 (43%), Gaps = 38/180 (21%)
Query: 5 LNVQSIRLTGS---SGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIAS 61
L+ S R+ G SG+IL NGQ RK +QF K Y++QDD L P LTV E + +
Sbjct: 50 LDAISGRVEGGGTTSGQILFNGQPRK---PDQFQKCVAYVRQDDILLPGLTVRETLTYTA 106
Query: 62 HLKLGFKVSTQEKK---DQVSLELWNNFCKKKKK--------KKR--------------- 95
L+L K S +K + V L ++R
Sbjct: 107 ILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLI 166
Query: 96 ------GLDSSSCSQCVSLLANLAKQGRTVVATIHTPSALLFEKFDSLYALAKGHCIYRG 149
GLDS + VS L+ LA++ R V+ TIH P + LF FD + L+ G +Y G
Sbjct: 167 LDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226
Score = 57.3 bits (139), Expect = 8e-10
Identities = 16/37 (43%), Positives = 27/37 (72%)
Query: 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
IL+ +S ++GQ+ AI+G SG+GK+TLL+ ++G
Sbjct: 20 ARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGR 56
Score = 41.1 bits (97), Expect = 3e-04
Identities = 16/39 (41%), Positives = 23/39 (58%)
Query: 176 NLAKQGRTVVATIHTPSALLFEKFDSLYALAKGHCIYRG 214
LA++ R V+ TIH P + LF FD + L+ G +Y G
Sbjct: 188 QLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226
>gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 226
Score = 66.8 bits (164), Expect = 5e-13
Identities = 21/38 (55%), Positives = 28/38 (73%)
Query: 241 NKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
E L ++ E +AG+ AI+GPSG+GKSTLLN+L GL
Sbjct: 17 KVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGL 54
>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional.
Length = 1470
Score = 67.6 bits (165), Expect = 1e-12
Identities = 59/213 (27%), Positives = 101/213 (47%), Gaps = 48/213 (22%)
Query: 5 LNVQSIRLTGS--SGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASH 62
++V + R TG G I ++G +K E F ++S Y +Q+D P++TV E+++ ++
Sbjct: 923 MDVLAGRKTGGYIEGDIRISGFPKKQ---ETFARISGYCEQNDIHSPQVTVRESLIYSAF 979
Query: 63 LKLGFKVSTQEKK---DQVS--LELWN------------NFCKKKKKK------------ 93
L+L +VS +EK D+V +EL N +++K+
Sbjct: 980 LRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPS 1039
Query: 94 -------KRGLDSSSCSQCVSLLANLAKQGRTVVATIHTPSALLFEKFDSLYALAK-GHC 145
GLD+ + + + + N GRTVV TIH PS +FE FD L + + G
Sbjct: 1040 IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQV 1099
Query: 146 IYRGSISR----LVPHLASL-GLP-CPAYHNPA 172
IY G + R ++ + ++ G+P +NPA
Sbjct: 1100 IYSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPA 1132
Score = 50.6 bits (121), Expect = 4e-07
Identities = 19/35 (54%), Positives = 29/35 (82%)
Query: 243 EILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAG 277
++L ++G F+ G LTA+MG SGAGK+TL+++LAG
Sbjct: 894 QLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAG 928
Score = 47.9 bits (114), Expect = 4e-06
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 7/72 (9%)
Query: 176 NLAKQGRTVVATIHTPSALLFEKFDSLYALAK-GHCIYRGSISR----LVPHLASL-GLP 229
N GRTVV TIH PS +FE FD L + + G IY G + R ++ + ++ G+P
Sbjct: 1064 NTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVP 1123
Query: 230 -CPAYHNPADFL 240
+NPA ++
Sbjct: 1124 KIKEKYNPATWM 1135
Score = 42.1 bits (99), Expect = 2e-04
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 96 GLDSSSCSQCVSLLANLAKQGR-TVVATIHTPSALLFEKFDSLYALAKGHCIYRGSISRL 154
GLDSS+ Q V L + TV+ ++ P+ F+ FD + L++G +Y+G +
Sbjct: 366 GLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHI 425
Query: 155 VPHLASLGLPCPAYHNPADF 174
+ S G CP ADF
Sbjct: 426 LEFFESCGFKCPERKGTADF 445
Score = 37.1 bits (86), Expect = 0.011
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 244 ILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAG 277
IL SG K ++T ++GP +GK+TLL LAG
Sbjct: 180 ILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAG 213
Score = 36.7 bits (85), Expect = 0.012
Identities = 18/58 (31%), Positives = 30/58 (51%)
Query: 183 TVVATIHTPSALLFEKFDSLYALAKGHCIYRGSISRLVPHLASLGLPCPAYHNPADFL 240
TV+ ++ P+ F+ FD + L++G +Y+G ++ S G CP ADFL
Sbjct: 389 TVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESCGFKCPERKGTADFL 446
>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter
nucleotide-binding domain. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 157
Score = 61.5 bits (150), Expect = 9e-12
Identities = 18/42 (42%), Positives = 28/42 (66%)
Query: 239 FLNKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTY 280
+ + L +S KAG++ A++GP+G+GKSTLL +AGL
Sbjct: 9 YGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLK 50
Score = 31.1 bits (71), Expect = 0.30
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 95 RGLDSSSCSQCVSLLANLAKQGRTVVATIHTPSALLFEKFDSLYALAKGH 144
GLD +S + + LL LA++GRTV+ H P L D + L G
Sbjct: 109 SGLDPASRERLLELLRELAEEGRTVIIVTHDPE-LAELAADRVIVLKDGK 157
>gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the
transporters involved in export of lipoprotein and
macrolide, and cell division protein. This family is
comprised of MJ0796 ATP-binding cassette,
macrolide-specific ABC-type efflux carrier (MacAB), and
proteins involved in cell division (FtsE), and release
of lipoproteins from the cytoplasmic membrane (LolCDE).
They are clustered together phylogenetically. MacAB is
an exporter that confers resistance to macrolides, while
the LolCDE system is not a transporter at all. An FtsE
null mutants showed filamentous growth and appeared
viable on high salt medium only, indicating a role for
FtsE in cell division and/or salt transport. The LolCDE
complex catalyzes the release of lipoproteins from the
cytoplasmic membrane prior to their targeting to the
outer membrane.
Length = 218
Score = 62.5 bits (153), Expect = 1e-11
Identities = 21/38 (55%), Positives = 27/38 (71%)
Query: 241 NKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
+ L G+S + G+ AI+GPSG+GKSTLLNIL GL
Sbjct: 16 KVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGL 53
>gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase
component [Defense mechanisms].
Length = 293
Score = 63.5 bits (155), Expect = 1e-11
Identities = 20/39 (51%), Positives = 29/39 (74%)
Query: 241 NKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLT 279
+K L G+S E + G++ ++GP+GAGK+TLL ILAGL
Sbjct: 17 DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLL 55
Score = 54.6 bits (132), Expect = 1e-08
Identities = 43/175 (24%), Positives = 68/175 (38%), Gaps = 37/175 (21%)
Query: 12 LTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVST 71
L +SG+ILV G + + + Y+ Q+ +L P+LTV E + + L K
Sbjct: 55 LKPTSGEILVLGYDVVKE-PAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEA 113
Query: 72 QEKKDQVS--LELWNNFCKKKKK--------KKR---------------------GLDSS 100
+E+ +++ L + K KK K+R GLD
Sbjct: 114 EERIEELLELFGLED---KANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPE 170
Query: 101 SCSQCVSLLANLAKQG-RTVVATIHTPSALLFEKFDSLYALAKGHCIYRGSISRL 154
S + LL LAK+G T++ + H E D + L G I G+ L
Sbjct: 171 SRREIWELLRELAKEGGVTILLSTH-ILEEAEELCDRVIILNDGKIIAEGTPEEL 224
Score = 29.6 bits (67), Expect = 2.0
Identities = 20/87 (22%), Positives = 30/87 (34%), Gaps = 5/87 (5%)
Query: 176 NLAKQG-RTVVATIHTPSALLFEKFDSLYALAKGHCIYRGSISRLVPHLASLGLPCPAYH 234
LAK+G T++ + H E D + L G I G+ L G
Sbjct: 181 ELAKEGGVTILLSTH-ILEEAEELCDRVIILNDGKIIAEGTPEEL---KEKFGGKGVIEL 236
Query: 235 NPADFLNKEILHGISGEFKAGQLTAIM 261
P E+L G+ +L I+
Sbjct: 237 EPERLELAELLEGLKLVKGEEELAEIL 263
>gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug
resistance protein-like transporters. The MRP
(Multidrug Resistance Protein)-like transporters are
involved in drug, peptide, and lipid export. They belong
to the subfamily C of the ATP-binding cassette (ABC)
superfamily of transport proteins. The ABCC subfamily
contains transporters with a diverse functional spectrum
that includes ion transport, cell surface receptor, and
toxin secretion activities. The MRP-like family, similar
to all ABC proteins, have a common four-domain core
structure constituted by two membrane-spanning domains,
each composed of six transmembrane (TM) helices, and two
nucleotide-binding domains (NBD). ABC transporters are a
subset of nucleotide hydrolases that contain a signature
motif, Q-loop, and H-loop/switch region, in addition to,
the Walker A motif/P-loop and Walker B motif commonly
found in a number of ATP- and GTP-binding and
hydrolyzing proteins.
Length = 171
Score = 60.9 bits (149), Expect = 2e-11
Identities = 19/38 (50%), Positives = 25/38 (65%)
Query: 241 NKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
K +L +S K G+ AI+GPSG+GKSTLL +L L
Sbjct: 14 PKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRL 51
>gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding
cassette component of cobalt transport system. Domain I
of the ABC component of a cobalt transport family found
in bacteria, archaea, and eukaryota. The transition
metal cobalt is an essential component of many enzymes
and must be transported into cells in appropriate
amounts when needed. This ABC transport system of the
CbiMNQO family is involved in cobalt transport in
association with the cobalamin (vitamin B12)
biosynthetic pathways. Most of cobalt (Cbi) transport
systems possess a separate CbiN component, the
cobalt-binding periplasmic protein, and they are encoded
by the conserved gene cluster cbiMNQO. Both the CbiM and
CbiQ proteins are integral cytoplasmic membrane
proteins, and the CbiO protein has the linker peptide
and the Walker A and B motifs commonly found in the
ATPase components of the ABC-type transport systems.
Length = 211
Score = 60.6 bits (148), Expect = 4e-11
Identities = 18/38 (47%), Positives = 24/38 (63%)
Query: 241 NKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
+ L IS K G+ I+GP+G+GKSTLL +L GL
Sbjct: 13 ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGL 50
Score = 30.1 bits (69), Expect = 0.91
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 96 GLDSSSCSQCVSLLANLAKQGRTVVATIHTPSALLFEKFDSLYALAKGH 144
GLD + + + LL L +G+T++ H LL E D + L G
Sbjct: 164 GLDPAGRRELLELLKKLKAEGKTIIIVTHDLD-LLLELADRVIVLEDGK 211
>gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of
iron-siderophores, vitamin B12 and hemin transporters
and related proteins. ABC transporters, involved in the
uptake of siderophores, heme, and vitamin B12, are
widely conserved in bacteria and archaea. Only very few
species lack representatives of the siderophore family
transporters. The E. coli BtuCD protein is an ABC
transporter mediating vitamin B12 uptake. The two
ATP-binding cassettes (BtuD) are in close contact with
each other, as are the two membrane-spanning subunits
(BtuC); this arrangement is distinct from that observed
for the E. coli lipid flippase MsbA. The BtuC subunits
provide 20 transmembrane helices grouped around a
translocation pathway that is closed to the cytoplasm by
a gate region, whereas the dimer arrangement of the BtuD
subunits resembles the ATP-bound form of the Rad50 DNA
repair enzyme. A prominent cytoplasmic loop of BtuC
forms the contact region with the ATP-binding cassette
and represent a conserved motif among the ABC
transporters.
Length = 180
Score = 60.1 bits (147), Expect = 5e-11
Identities = 19/38 (50%), Positives = 27/38 (71%)
Query: 241 NKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
+ +L +S +AG++ I+GP+GAGKSTLL LAGL
Sbjct: 11 GRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGL 48
Score = 31.6 bits (73), Expect = 0.30
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 107 SLLANLAKQ-GRTVVATIHTPS-ALLFEKFDSLYALAKGHCIYRG 149
LL LA++ G+TVV +H + A + D + L G + +G
Sbjct: 138 ELLRRLARERGKTVVMVLHDLNLAARY--ADRVILLKDGRIVAQG 180
Score = 27.4 bits (62), Expect = 6.7
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Query: 176 NLAKQ-GRTVVATIHTPS-ALLFEKFDSLYALAKGHCIYRG 214
LA++ G+TVV +H + A + D + L G + +G
Sbjct: 142 RLARERGKTVVMVLHDLNLAARY--ADRVILLKDGRIVAQG 180
>gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC
transporter, lactococcin 972 group. A gene pair with a
fairly wide distribution consists of a polypeptide
related to the lactococcin 972 (see TIGR01653) and
multiple-membrane-spanning putative immunity protein
(see TIGR01654). This model represents a small clade
within the ABC transporters that regularly are found
adjacent to these bacteriocin system gene pairs and are
likely serve as export proteins [Cellular processes,
Toxin production and resistance, Transport and binding
proteins, Unknown substrate].
Length = 206
Score = 60.3 bits (147), Expect = 6e-11
Identities = 19/40 (47%), Positives = 28/40 (70%)
Query: 239 FLNKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
F +K IL ++ + G++ AI+G SG+GKSTLLNI+ L
Sbjct: 8 FGDKVILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLL 47
Score = 33.7 bits (78), Expect = 0.065
Identities = 36/154 (23%), Positives = 62/154 (40%), Gaps = 36/154 (23%)
Query: 15 SSGKILVNGQER---KSACIEQFL--KLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKV 69
SG++ +NGQE S +F KL Y+ Q+ AL TV E + + K K
Sbjct: 51 DSGQVYLNGQETPPLNSKKASKFRREKLG-YLFQNFALIENETVEENLDLGLKYKKLSKK 109
Query: 70 STQEKKDQVSLELWNNFCKKKK-------KKKR---------------------GLDSSS 101
+EKK + ++ N K+K +++R LD +
Sbjct: 110 EKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKPPPLILADEPTGSLDPKN 169
Query: 102 CSQCVSLLANLAKQGRTVVATIHTPSALLFEKFD 135
+ + LL L +G+T++ H P + ++ D
Sbjct: 170 RDEVLDLLLELNDEGKTIIIVTHDP--EVAKQAD 201
>gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in
Fe-S cluster assembly, ATPase component. Biosynthesis
of iron-sulfur clusters (Fe-S) depends on multi-protein
systems. The SUF system of E. coli and Erwinia
chrysanthemi is important for Fe-S biogenesis under
stressful conditions. The SUF system is made of six
proteins: SufC is an atypical cytoplasmic ABC-ATPase,
which forms a complex with SufB and SufD; SufA plays the
role of a scaffold protein for assembly of iron-sulfur
clusters and delivery to target proteins; SufS is a
cysteine desulfurase which mobilizes the sulfur atom
from cysteine and provides it to the cluster; SufE has
no associated function yet.
Length = 200
Score = 59.8 bits (146), Expect = 7e-11
Identities = 18/37 (48%), Positives = 26/37 (70%)
Query: 241 NKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAG 277
KEIL G++ K G++ A+MGP+G+GKSTL + G
Sbjct: 12 GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMG 48
>gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components
[Carbohydrate transport and metabolism].
Length = 338
Score = 61.5 bits (150), Expect = 7e-11
Identities = 17/41 (41%), Positives = 28/41 (68%)
Query: 238 DFLNKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
F + E+L ++ + + G+ ++GPSG GKSTLL ++AGL
Sbjct: 12 SFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGL 52
>gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette
domain of the phosphate transport system. Phosphate
uptake is of fundamental importance in the cell
physiology of bacteria because phosphate is required as
a nutrient. The Pst system of E. coli comprises four
distinct subunits encoded by the pstS, pstA, pstB, and
pstC genes. The PstS protein is a phosphate-binding
protein located in the periplasmic space. PstA and PstC
are hydrophobic and they form the transmembrane portion
of the Pst system. PstB is the catalytic subunit, which
couples the energy of ATP hydrolysis to the import of
phosphate across cellular membranes through the Pst
system, often referred as ABC-protein. PstB belongs to
one of the largest superfamilies of proteins
characterized by a highly conserved adenosine
triphosphate (ATP) binding cassette (ABC), which is also
a nucleotide binding domain (NBD).
Length = 227
Score = 59.9 bits (146), Expect = 1e-10
Identities = 19/38 (50%), Positives = 26/38 (68%)
Query: 241 NKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
+K L IS + G++TA++GPSG GKSTLL +L L
Sbjct: 12 DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRL 49
>gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase
[Posttranslational modification, protein turnover,
chaperones].
Length = 251
Score = 59.9 bits (146), Expect = 1e-10
Identities = 19/37 (51%), Positives = 26/37 (70%)
Query: 241 NKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAG 277
KEIL G++ K G++ AIMGP+G+GKSTL + G
Sbjct: 16 KKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMG 52
>gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the
metal-type transporters. This family includes
transporters involved in the uptake of various metallic
cations such as iron, manganese, and zinc. The ATPases
of this group of transporters are very similar to
members of iron-siderophore uptake family suggesting
that they share a common ancestor. The best
characterized metal-type ABC transporters are the
YfeABCD system of Y. pestis, the SitABCD system of
Salmonella enterica serovar Typhimurium, and the SitABCD
transporter of Shigella flexneri. Moreover other
uncharacterized homologs of these metal-type
transporters are mainly found in pathogens like
Haemophilus or enteroinvasive E. coli isolates.
Length = 213
Score = 59.1 bits (144), Expect = 2e-10
Identities = 19/38 (50%), Positives = 25/38 (65%)
Query: 241 NKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
+L +S E K G+ AI+GP+GAGKSTLL + GL
Sbjct: 11 GHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGL 48
Score = 32.9 bits (76), Expect = 0.13
Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 96 GLDSSSCSQCVSLLANLAKQGRTVVATIHTPSALLFEKFDSLYALAKG 143
G+D + LL L ++G T++ H +L E FD + L +
Sbjct: 162 GVDPKTQEDIYELLRELRREGMTILVVTHDLGLVL-EYFDRVLLLNRT 208
>gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of
the nitrate and sulfonate transporters. NrtD and SsuB
are the ATP-binding subunits of the bacterial ABC-type
nitrate and sulfonate transport systems, respectively.
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 220
Score = 58.6 bits (143), Expect = 3e-10
Identities = 19/37 (51%), Positives = 24/37 (64%)
Query: 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
L IS + G+ A++GPSG GKSTLL I+AGL
Sbjct: 17 VTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGL 53
>gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport
system, ATPase component [Inorganic ion transport and
metabolism].
Length = 248
Score = 58.3 bits (142), Expect = 5e-10
Identities = 20/41 (48%), Positives = 27/41 (65%)
Query: 238 DFLNKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
F E+L I+ + G+ AI+GPSG GKSTLL ++AGL
Sbjct: 12 SFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGL 52
Score = 27.9 bits (63), Expect = 5.5
Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 8/67 (11%)
Query: 12 LTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVST 71
+SG++L++G+ + Y+ Q+DAL P LTV + + + L+L K S
Sbjct: 53 EKPTSGEVLLDGRPVTGPGPDI-----GYVFQEDALLPWLTVLDNVALG--LELRGK-SK 104
Query: 72 QEKKDQV 78
E +++
Sbjct: 105 AEARERA 111
>gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 258
Score = 58.2 bits (142), Expect = 5e-10
Identities = 17/37 (45%), Positives = 26/37 (70%)
Query: 241 NKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAG 277
+ +L +S + G++ AI+GP+GAGKSTLL L+G
Sbjct: 14 GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSG 50
>gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding
protein-dependent transport systems. This class is
comprised of all BPD (Binding Protein Dependent) systems
that are largely represented in archaea and eubacteria
and are primarily involved in scavenging solutes from
the environment. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides, and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 178
Score = 56.4 bits (137), Expect = 8e-10
Identities = 19/42 (45%), Positives = 30/42 (71%)
Query: 237 ADFLNKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
+ K +L+ +S +AG++ A++GPSG+GKSTLL +AGL
Sbjct: 8 KRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGL 49
>gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the
drug resistance transporter and related proteins,
subfamily A. This family of ATP-binding proteins
belongs to a multi-subunit transporter involved in drug
resistance (BcrA and DrrA), nodulation, lipid transport,
and lantibiotic immunity. In bacteria and archaea, these
transporters usually include an ATP-binding protein and
one or two integral membrane proteins. Eukaryotic
systems of the ABCA subfamily display ABC domains that
are quite similar to this family. The ATP-binding domain
shows the highest similarity between all members of the
ABC transporter family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 173
Score = 55.9 bits (136), Expect = 1e-09
Identities = 16/38 (42%), Positives = 25/38 (65%)
Query: 241 NKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
K L IS + G++ ++GP+GAGK+TL+ I+ GL
Sbjct: 12 KKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGL 49
>gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport
systems, ATPase components [Inorganic ion transport and
metabolism / Coenzyme metabolism].
Length = 258
Score = 56.8 bits (138), Expect = 1e-09
Identities = 20/38 (52%), Positives = 26/38 (68%)
Query: 241 NKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
K IL +S G++T I+GP+G+GKSTLL LAGL
Sbjct: 14 GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGL 51
Score = 29.1 bits (66), Expect = 2.1
Identities = 40/200 (20%), Positives = 74/200 (37%), Gaps = 45/200 (22%)
Query: 12 LTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTE--AMMIASHLKLGFKV 69
L SG++L++G++ S ++ K Y+ Q + LTV E + HL L F
Sbjct: 52 LKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGL-FGR 110
Query: 70 STQEKKDQVSLELWNNFCKKKKKKKRGLDSSSCSQ------------------------- 104
++E ++ V L + R +D S +
Sbjct: 111 PSKEDEEIVEEALEL--LGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSH 168
Query: 105 --------CVSLLANLAK-QGRTVVATIHTPS-ALLFEKFDSLYALAKGHCIYRGSISRL 154
+ LL +L + +G TVV +H + A + D L L G + +G+ +
Sbjct: 169 LDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYA--DHLILLKDGKIVAQGTPEEV 226
Query: 155 V--PHLASL-GLPCPAYHNP 171
+ +L + G+ +P
Sbjct: 227 LTEENLREVYGVDADVIEDP 246
>gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport
system involved in resistant to organic solvents. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 235
Score = 56.7 bits (138), Expect = 2e-09
Identities = 18/41 (43%), Positives = 29/41 (70%)
Query: 238 DFLNKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
F + +L G+ + + G++ AI+GPSG+GKSTLL ++ GL
Sbjct: 9 SFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGL 49
>gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC. SufC is part of the SUF
system, shown in E. coli to consist of six proteins and
believed to act in Fe-S cluster formation during
oxidative stress. SufC forms a complex with SufB and
SufD. SufC belongs to the ATP-binding cassette
transporter family (pfam00005) but is no longer thought
to be part of a transporter. The complex is reported as
cytosolic (PMID:12554644) or associated with the
membrane (PMID:11943156). The SUF system also includes a
cysteine desulfurase (SufS, enhanced by SufE) and a
probable iron-sulfur cluster assembly scaffold protein,
SufA [Biosynthesis of cofactors, prosthetic groups, and
carriers, Other].
Length = 243
Score = 56.5 bits (137), Expect = 2e-09
Identities = 20/36 (55%), Positives = 27/36 (75%)
Query: 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAG 277
KEIL G++ K G++ AIMGP+G+GKSTL +AG
Sbjct: 13 KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAG 48
>gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase
component [Amino acid transport and metabolism].
Length = 240
Score = 56.4 bits (137), Expect = 2e-09
Identities = 22/40 (55%), Positives = 29/40 (72%)
Query: 239 FLNKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
F +KE+L GIS + G++ I+GPSG+GKSTLL L GL
Sbjct: 12 FGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGL 51
>gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the
carbohydrate and solute transporters-like. This family
is comprised of proteins involved in the transport of
apparently unrelated solutes and proteins specific for
di- and oligosaccharides and polyols. ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 213
Score = 55.2 bits (134), Expect = 4e-09
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 238 DFLNKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLT 279
+ + L +S + G+ A++GPSG GK+TLL ++AGL
Sbjct: 9 TYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLE 50
Score = 28.6 bits (65), Expect = 3.4
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Query: 15 SSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEK 74
SG+IL++G++ E+ + + QD AL P LTV E IA LKL V E
Sbjct: 53 DSGEILIDGRDVTGVPPER--RNIGMVFQDYALFPHLTVAEN--IAFGLKLR-GVPKAEI 107
Query: 75 KDQVSLELW 83
+ +V L
Sbjct: 108 RARVRELLE 116
>gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component
[Inorganic ion transport and metabolism].
Length = 254
Score = 55.3 bits (134), Expect = 5e-09
Identities = 19/38 (50%), Positives = 28/38 (73%)
Query: 241 NKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
N+ +L IS + G++TA++GP+GAGKSTLL + GL
Sbjct: 16 NRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGL 53
Score = 32.6 bits (75), Expect = 0.17
Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 96 GLDSSSCSQCVSLLANLAKQGRTVVATIHTPSALLFEKFDSLYALAKGHC 145
G+D + + LL L ++G+TV+ H L+ FD + L +
Sbjct: 169 GVDVAGQKEIYDLLKELRQEGKTVLMVTHDLG-LVMAYFDRVICLNRHLI 217
>gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 235
Score = 55.0 bits (133), Expect = 6e-09
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 241 NKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
K L +S E + G+ ++GP+G+GKSTLL +L GL
Sbjct: 16 RKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGL 53
>gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 253
Score = 54.9 bits (133), Expect = 8e-09
Identities = 16/35 (45%), Positives = 23/35 (65%)
Query: 241 NKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNIL 275
+K L I+ + ++TA++GPSG GKSTLL L
Sbjct: 19 DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCL 53
>gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of
branched-chain amino acid transporter. LivF (TM1139) is
part of the LIV-I bacterial ABC-type two-component
transport system that imports neutral, branched-chain
amino acids. The E. coli branched-chain amino acid
transporter comprises a heterodimer of ABC transporters
(LivF and LivG), a heterodimer of six-helix TM domains
(LivM and LivH), and one of two alternative soluble
periplasmic substrate binding proteins (LivK or LivJ).
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules.
Length = 222
Score = 54.4 bits (132), Expect = 8e-09
Identities = 16/37 (43%), Positives = 25/37 (67%)
Query: 243 EILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLT 279
+IL G+S G++ A++G +GAGK+TLL + GL
Sbjct: 14 QILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLL 50
>gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 252
Score = 54.2 bits (131), Expect = 1e-08
Identities = 17/39 (43%), Positives = 28/39 (71%)
Query: 241 NKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLT 279
K +L +S + G +T+I+GP+GAGKSTLL++++ L
Sbjct: 13 TKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLL 51
>gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd
biosynthesis, ATPase and permease components [Energy
production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 559
Score = 55.3 bits (134), Expect = 1e-08
Identities = 21/34 (61%), Positives = 26/34 (76%)
Query: 245 LHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
L ++ KAGQLTA++G SGAGKSTLLN+L G
Sbjct: 337 LSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGF 370
>gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in
lysophospholipase L1 biosynthesis, ATPase component
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 228
Score = 53.9 bits (130), Expect = 1e-08
Identities = 21/35 (60%), Positives = 26/35 (74%)
Query: 244 ILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
IL G+ K G+ AI+GPSG+GKSTLL +LAGL
Sbjct: 25 ILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGL 59
>gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the
binding protein-dependent phosphonate transport system.
Phosphonates are a class of organophosphorus compounds
characterized by a chemically stable
carbon-to-phosphorus (C-P) bond. Phosphonates are
widespread among naturally occurring compounds in all
kingdoms of wildlife, but only prokaryotic
microorganisms are able to cleave this bond. Certain
bacteria such as E. coli can use alkylphosphonates as a
phosphorus source. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 241
Score = 54.1 bits (131), Expect = 1e-08
Identities = 19/39 (48%), Positives = 24/39 (61%)
Query: 241 NKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLT 279
K+ L +S G+ A++GPSGAGKSTLL L GL
Sbjct: 13 GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLV 51
>gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 352
Score = 54.2 bits (131), Expect = 2e-08
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 239 FLNKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
F + + IS + K G+ ++GPSG GK+TLL ++AG
Sbjct: 15 FGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGF 54
Score = 28.8 bits (65), Expect = 3.2
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Query: 15 SSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQEK 74
SSG+IL++G++ E+ + + Q AL P +TV E +A LK+ K+ E
Sbjct: 58 SSGEILLDGEDITDVPPEK--RPIGMVFQSYALFPHMTVEEN--VAFGLKVRKKLKKAEI 113
Query: 75 KDQVS--LEL 82
K +V LEL
Sbjct: 114 KARVEEALEL 123
>gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of
PrtD, subfamily C. This family represents the ABC
component of the protease secretion system PrtD, a
60-kDa integral membrane protein sharing 37% identity
with HlyB, the ABC component of the alpha-hemolysin
secretion pathway, in the C-terminal domain. They export
degradative enzymes by using a type I protein secretion
system and lack an N-terminal signal peptide, but
contain a C-terminal secretion signal. The Type I
secretion apparatus is made up of three components, an
ABC transporter, a membrane fusion protein (MFP), and an
outer membrane protein (OMP). For the HlyA transporter
complex, HlyB (ABC transporter) and HlyD (MFP) reside in
the inner membrane of E. coli. The OMP component is
TolC, which is thought to interact with the MFP to form
a continuous channel across the periplasm from the
cytoplasm to the exterior. HlyB belongs to the family of
ABC transporters, which are ubiquitous, ATP-dependent
transmembrane pumps or channels. The spectrum of
transport substrates ranges from inorganic ions,
nutrients such as amino acids, sugars, or peptides,
hydrophobic drugs, to large polypeptides, such as HlyA.
Length = 173
Score = 52.2 bits (126), Expect = 3e-08
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 241 NKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
+L +S + G+ AI+GPSG+GKSTL ++ GL
Sbjct: 14 EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGL 51
>gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of
the sulfate transporter. Part of the ABC transporter
complex cysAWTP involved in sulfate import. Responsible
for energy coupling to the transport system. The complex
is composed of two ATP-binding proteins (cysA), two
transmembrane proteins (cysT and cysW), and a
solute-binding protein (cysP). ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 239
Score = 52.7 bits (127), Expect = 3e-08
Identities = 17/34 (50%), Positives = 27/34 (79%)
Query: 245 LHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
L +S + +G+L A++GPSG+GK+TLL ++AGL
Sbjct: 18 LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGL 51
>gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding
cassette component of cobalt transport system. Domain
II of the ABC component of a cobalt transport family
found in bacteria, archaea, and eukaryota. The
transition metal cobalt is an essential component of
many enzymes and must be transported into cells in
appropriate amounts when needed. The CbiMNQO family ABC
transport system is involved in cobalt transport in
association with the cobalamin (vitamin B12)
biosynthetic pathways. Most cobalt (Cbi) transport
systems possess a separate CbiN component, the
cobalt-binding periplasmic protein, and they are encoded
by the conserved gene cluster cbiMNQO. Both the CbiM and
CbiQ proteins are integral cytoplasmic membrane
proteins, and the CbiO protein has the linker peptide
and the Walker A and B motifs commonly found in the
ATPase components of the ABC-type transport systems.
Length = 205
Score = 52.3 bits (126), Expect = 4e-08
Identities = 19/38 (50%), Positives = 26/38 (68%)
Query: 241 NKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
EIL +S + AG++ A+ G +GAGK+TL ILAGL
Sbjct: 12 GTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGL 49
>gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the
histidine and glutamine transporters. HisP and GlnQ are
the ATP-binding components of the bacterial periplasmic
histidine and glutamine permeases, respectively.
Histidine permease is a multi-subunit complex containing
the HisQ and HisM integral membrane subunits and two
copies of HisP. HisP has properties intermediate between
those of integral and peripheral membrane proteins and
is accessible from both sides of the membrane,
presumably by its interaction with HisQ and HisM. The
two HisP subunits form a homodimer within the complex.
The domain structure of the amino acid uptake systems is
typical for prokaryotic extracellular solute binding
protein-dependent uptake systems. All of the amino acid
uptake systems also have at least one, and in a few
cases, two extracellular solute binding proteins located
in the periplasm of Gram-negative bacteria, or attached
to the cell membrane of Gram-positive bacteria. The
best-studied member of the PAAT (polar amino acid
transport) family is the HisJQMP system of S.
typhimurium, where HisJ is the extracellular solute
binding proteins and HisP is the ABC protein.
Length = 213
Score = 52.1 bits (126), Expect = 4e-08
Identities = 18/41 (43%), Positives = 25/41 (60%)
Query: 239 FLNKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLT 279
F + +L GI K G++ I+GPSG+GKSTLL + L
Sbjct: 10 FGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLE 50
>gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase
component [Inorganic ion transport and metabolism].
Length = 345
Score = 53.1 bits (128), Expect = 4e-08
Identities = 23/40 (57%), Positives = 29/40 (72%)
Query: 239 FLNKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
F L IS + K+G+L A++GPSGAGKSTLL I+AGL
Sbjct: 12 FGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGL 51
>gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 237
Score = 52.1 bits (126), Expect = 5e-08
Identities = 16/37 (43%), Positives = 26/37 (70%)
Query: 243 EILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLT 279
+ L G+S E + G++ A++G +GAGK+TLL + GL
Sbjct: 17 QALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLV 53
>gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to
organic solvents, ATPase component [Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 263
Score = 52.6 bits (127), Expect = 5e-08
Identities = 18/40 (45%), Positives = 28/40 (70%)
Query: 239 FLNKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
F ++ IL G+ + G++ AI+G SG+GKSTLL ++ GL
Sbjct: 18 FGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGL 57
>gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system,
ATPase component [Inorganic ion transport and
metabolism].
Length = 258
Score = 51.9 bits (125), Expect = 7e-08
Identities = 19/38 (50%), Positives = 25/38 (65%)
Query: 241 NKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
+ L ++ E G++ AI+GPSGAGKSTLL L GL
Sbjct: 16 GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGL 53
Score = 30.7 bits (70), Expect = 0.78
Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 97 LDSSSCSQCVSLLANLAKQ-GRTVVATIHTPSALLFEKFDSLYALAKGHCIYRGSISRL 154
LD S + + +L ++ ++ G TV+ +H L + D + L G ++ G S L
Sbjct: 178 LDPESAKKVMDILKDINQEDGITVIVNLHQVD-LAKKYADRIIGLKAGRIVFDGPASEL 235
Score = 27.2 bits (61), Expect = 9.7
Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 178 AKQGRTVVATIHTPSALLFEKFDSLYALAKGHCIYRGSISRL 219
+ G TV+ +H L + D + L G ++ G S L
Sbjct: 195 QEDGITVIVNLHQVD-LAKKYADRIIGLKAGRIVFDGPASEL 235
>gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit;
Provisional.
Length = 353
Score = 52.4 bits (126), Expect = 7e-08
Identities = 20/40 (50%), Positives = 31/40 (77%)
Query: 239 FLNKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
F ++L+ IS + +GQ+ A++GPSG+GK+TLL I+AGL
Sbjct: 12 FGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGL 51
>gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated.
Length = 252
Score = 51.6 bits (124), Expect = 9e-08
Identities = 18/37 (48%), Positives = 26/37 (70%)
Query: 241 NKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAG 277
EIL G++ G++ AIMGP+G+GKSTL ++AG
Sbjct: 19 ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAG 55
>gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug
resistance-like subfamily G of ATP-binding cassette
transporters. The pleiotropic drug resistance (PDR) is
a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. This PDR subfamily represents
domain I of its (ABC-IM)2 organization. ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds including
sugars, ions, peptides, and more complex organic
molecules. The nucleotide-binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 202
Score = 51.1 bits (123), Expect = 9e-08
Identities = 38/148 (25%), Positives = 62/148 (41%), Gaps = 23/148 (15%)
Query: 16 SGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLG---FKVSTQ 72
G I NG K E++ Y+ ++D P LTV E + A K +S
Sbjct: 64 EGDIHYNGIPYKEFA-EKYPGEIIYVSEEDVHFPTLTVRETLDFALRCKGNEFVRGISGG 122
Query: 73 EKKDQVS----------LELWNNFCKKKKKKKRGLDSSSCSQCVSLLANLAKQ-GRTVVA 121
E+K +VS + W+N RGLDSS+ + + + +A T
Sbjct: 123 ERK-RVSIAEALVSRASVLCWDN-------STRGLDSSTALEILKCIRTMADVLKTTTFV 174
Query: 122 TIHTPSALLFEKFDSLYALAKGHCIYRG 149
+++ S +++ FD + L +G IY G
Sbjct: 175 SLYQASDEIYDLFDKVLVLYEGRQIYYG 202
Score = 44.6 bits (106), Expect = 2e-05
Identities = 18/44 (40%), Positives = 23/44 (52%)
Query: 241 NKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLNFS 284
IL SG K G++ ++G G+G STLL LA T N S
Sbjct: 19 KIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVS 62
Score = 31.1 bits (71), Expect = 0.50
Identities = 9/36 (25%), Positives = 17/36 (47%)
Query: 179 KQGRTVVATIHTPSALLFEKFDSLYALAKGHCIYRG 214
T +++ S +++ FD + L +G IY G
Sbjct: 167 VLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202
>gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component
[Coenzyme metabolism].
Length = 231
Score = 51.2 bits (123), Expect = 1e-07
Identities = 18/26 (69%), Positives = 23/26 (88%)
Query: 252 FKAGQLTAIMGPSGAGKSTLLNILAG 277
AG++ AI+GPSGAGKSTLLN++AG
Sbjct: 22 VPAGEIVAILGPSGAGKSTLLNLIAG 47
>gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding
subunit; Provisional.
Length = 356
Score = 51.8 bits (125), Expect = 1e-07
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 243 EILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
+++ GI + G+ ++GPSG GKSTLL ++AGL
Sbjct: 18 QVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGL 53
>gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette
component of monosaccharide transport system. This
family represents the domain I of the carbohydrate
uptake proteins that transport only monosaccharides
(Monos). The Carb_Monos family is involved in the uptake
of monosaccharides, such as pentoses (such as xylose,
arabinose, and ribose) and hexoses (such as xylose,
arabinose, and ribose), that cannot be broken down to
simple sugars by hydrolysis. Pentoses include xylose,
arabinose, and ribose. Important hexoses include
glucose, galactose, and fructose. In members of the
Carb_monos family, the single hydrophobic gene product
forms a homodimer while the ABC protein represents a
fusion of two nucleotide-binding domains. However, it is
assumed that two copies of the ABC domains are present
in the assembled transporter.
Length = 163
Score = 49.7 bits (120), Expect = 2e-07
Identities = 17/34 (50%), Positives = 26/34 (76%)
Query: 245 LHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
L G+S + G++ A++G +GAGKSTL+ IL+GL
Sbjct: 16 LDGVSLSVRRGEVHALLGENGAGKSTLMKILSGL 49
>gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 207
Score = 50.3 bits (121), Expect = 2e-07
Identities = 15/38 (39%), Positives = 25/38 (65%)
Query: 241 NKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
+ + G+S AG+ + GP+G+GK+TLL ++AGL
Sbjct: 14 GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGL 51
>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding
protein. This model represents LolD, a member of the
ABC transporter family (pfam00005). LolD is involved in
localization of lipoproteins in some bacteria. It works
with a transmembrane protein LolC, which in some species
is a paralogous pair LolC and LolE. Depending on whether
the residue immediately following the new, modified
N-terminal Cys residue, the nascent lipoprotein may be
carried further by LolA and LolB to the outer membrane,
or remain at the inner membrane. The top scoring
proteins excluded by this model include homologs from
the archaeal genus Methanosarcina [Protein fate, Protein
and peptide secretion and trafficking].
Length = 221
Score = 50.4 bits (121), Expect = 2e-07
Identities = 18/36 (50%), Positives = 26/36 (72%)
Query: 243 EILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
+L G+S G++ AI+G SG+GKSTLL++L GL
Sbjct: 19 RVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGL 54
>gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of
multidrug resistance-associated protein, subfamily C.
This subfamily is also known as MRP (multidrug
resistance-associated protein). Some of the MRP members
have five additional transmembrane segments in their
N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resisting lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate.
Length = 204
Score = 50.2 bits (121), Expect = 2e-07
Identities = 17/44 (38%), Positives = 25/44 (56%)
Query: 234 HNPADFLNKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAG 277
+ + L I+ E G+L AI+GP G+GKS+LL+ L G
Sbjct: 10 WDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLG 53
>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain
an N-terminal double-glycine peptidase domain [Defense
mechanisms].
Length = 709
Score = 51.1 bits (123), Expect = 3e-07
Identities = 18/38 (47%), Positives = 25/38 (65%)
Query: 241 NKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
+ +L +S E G+ AI+G SG+GKSTLL +L GL
Sbjct: 485 DPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGL 522
>gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain
of the thiamine transport system. Part of the
binding-protein-dependent transport system tbpA-thiPQ
for thiamine and TPP. Probably responsible for the
translocation of thiamine across the membrane. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 211
Score = 49.4 bits (118), Expect = 3e-07
Identities = 18/26 (69%), Positives = 24/26 (92%)
Query: 252 FKAGQLTAIMGPSGAGKSTLLNILAG 277
F G++TAI+GPSG+GKSTLLN++AG
Sbjct: 21 FAQGEITAIVGPSGSGKSTLLNLIAG 46
>gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding
protein. This model represents the ATP-binding protein
of a family of ABC transporters for inorganic phosphate.
In the model species Escherichia coli, a constitutive
transporter for inorganic phosphate, with low affinity,
is also present. The high affinity transporter that
includes this polypeptide is induced when extracellular
phosphate concentrations are low. The proteins most
similar to the members of this family but not included
appear to be amino acid transporters [Transport and
binding proteins, Anions].
Length = 247
Score = 49.6 bits (119), Expect = 4e-07
Identities = 17/32 (53%), Positives = 22/32 (68%)
Query: 241 NKEILHGISGEFKAGQLTAIMGPSGAGKSTLL 272
KE L I+ + Q+TA++GPSG GKSTLL
Sbjct: 13 EKEALKNINLDIPKNQVTALIGPSGCGKSTLL 44
>gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 49.7 bits (119), Expect = 5e-07
Identities = 18/36 (50%), Positives = 28/36 (77%)
Query: 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAG 277
+ +L G+S + + G++ AI+GP+GAGKSTLL L+G
Sbjct: 14 RRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSG 49
>gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed.
Length = 248
Score = 49.4 bits (118), Expect = 5e-07
Identities = 20/36 (55%), Positives = 27/36 (75%)
Query: 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAG 277
K IL G++ E + G++ AIMGP+G+GKSTL LAG
Sbjct: 14 KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAG 49
>gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD,
subfamily C. The CYD subfamily implicated in cytochrome
bd biogenesis. The CydC and CydD proteins are important
for the formation of cytochrome bd terminal oxidase of
E. coli and it has been proposed that they were
necessary for biosynthesis of the cytochrome bd quinol
oxidase and for periplasmic c-type cytochromes. CydCD
were proposed to determine a heterooligomeric complex
important for heme export into the periplasm or to be
involved in the maintenance of the proper redox state of
the periplasmic space. In Bacillus subtilis, the absence
of CydCD does not affect the presence of halo-cytochrome
c in the membrane and this observation suggests that
CydCD proteins are not involved in the export of heme in
this organism.
Length = 178
Score = 48.5 bits (116), Expect = 5e-07
Identities = 17/37 (45%), Positives = 26/37 (70%)
Query: 241 NKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAG 277
+++L +S E K G+ A++G SG+GKSTLL +L G
Sbjct: 14 EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTG 50
>gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of
glucan transporter and related proteins, subfamily C.
Glucan exporter ATP-binding protein. In A. tumefaciens
cyclic beta-1, 2-glucan must be transported into the
periplasmic space to exert its action as a virulence
factor. This subfamily belongs to the MRP-like family
and is involved in drug, peptide, and lipid export. The
MRP-like family, similar to all ABC proteins, have a
common four-domain core structure constituted by two
membrane-spanning domains each composed of six
transmembrane (TM) helices and two nucleotide-binding
domains (NBD). ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 229
Score = 49.1 bits (118), Expect = 6e-07
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 241 NKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
K +L I+ K G+ AI+GP+GAGK+TL+N+L
Sbjct: 15 KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRF 52
>gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex. Unfortunately, the gene symbol
nomenclature adopted based on this operon in B. subtilis
assigns cydC to the third gene in the operon where this
gene is actually homologous to the E. coli cydD gene. We
have chosen to name all homologs in this family in
accordance with the precedence of publication of the E.
coli name, CydD.
Length = 529
Score = 50.0 bits (120), Expect = 7e-07
Identities = 18/34 (52%), Positives = 23/34 (67%)
Query: 245 LHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
L +S G+ A++GPSGAGKSTLLN+L G
Sbjct: 338 LRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGF 371
>gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 252
Score = 48.8 bits (117), Expect = 8e-07
Identities = 17/35 (48%), Positives = 24/35 (68%)
Query: 244 ILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
L+ +S E + G+ I+G SG+GKSTL +LAGL
Sbjct: 22 ALNNVSLEIERGETLGIVGESGSGKSTLARLLAGL 56
>gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport
system, ATPase component. The biological function of
this family is not well characterized, but display ABC
domains similar to members of ABCA subfamily. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 211
Score = 48.3 bits (116), Expect = 9e-07
Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 241 NKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLT 279
K L G+S G + ++GP+GAGK+TL+ ILA LT
Sbjct: 12 KKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLT 49
>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding
protein. Phosphonates are a class of
phosphorus-containing organic compound with a stable
direct C-P bond rather than a C-O-P linkage. A number of
bacterial species have operons, typically about 14 genes
in size, with genes for ATP-dependent transport of
phosphonates, degradation, and regulation of the
expression of the system. Members of this protein family
are the ATP-binding cassette component of tripartite ABC
transporters of phosphonates [Transport and binding
proteins, Anions].
Length = 243
Score = 48.4 bits (116), Expect = 1e-06
Identities = 18/38 (47%), Positives = 23/38 (60%)
Query: 241 NKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
K+ L I+ G+ AI+GPSGAGKSTLL + L
Sbjct: 14 GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRL 51
>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport
systems, contain duplicated ATPase [General function
prediction only].
Length = 539
Score = 49.1 bits (118), Expect = 1e-06
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 245 LHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
+ +S + + G+ ++G SG+GKSTL ILAGL
Sbjct: 307 VDDVSFDLREGETLGLVGESGSGKSTLARILAGL 340
Score = 42.9 bits (102), Expect = 1e-04
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 244 ILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
+ +S E + G++ I+G SG+GKSTL L GL
Sbjct: 24 AVRDVSFEVEPGEILGIVGESGSGKSTLALALMGL 58
>gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of
the bacitracin-resistance transporter. The BcrA
subfamily represents ABC transporters involved in
peptide antibiotic resistance. Bacitracin is a
dodecapeptide antibiotic produced by B. licheniformis
and B. subtilis. The synthesis of bacitracin is
non-ribosomally catalyzed by a multi-enzyme complex
BcrABC. Bacitracin has potent antibiotic activity
against gram-positive bacteria. The inhibition of
peptidoglycan biosynthesis is the best characterized
bacterial effect of bacitracin. The bacitracin
resistance of B. licheniformis is mediated by the ABC
transporter Bcr which is composed of two identical BcrA
ATP-binding subunits and one each of the integral
membrane proteins, BcrB and BcrC. B. subtilis cells
carrying bcr genes on high-copy number plasmids develop
collateral detergent sensitivity, a similar phenomenon
in human cells with overexpressed multi-drug resistance
P-glycoprotein.
Length = 208
Score = 48.0 bits (115), Expect = 1e-06
Identities = 16/41 (39%), Positives = 25/41 (60%)
Query: 239 FLNKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLT 279
+ K +L IS K G++ +GP+GAGK+T + I+ GL
Sbjct: 10 YGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLI 50
>gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component
of branched chain amino acids transport system. The
Mj1267/LivG ABC transporter subfamily is involved in the
transport of the hydrophobic amino acids leucine,
isoleucine and valine. MJ1267 is a branched-chain amino
acid transporter with 29% similarity to both the LivF
and LivG components of the E. coli branched-chain amino
acid transporter. MJ1267 contains an insertion from
residues 114 to 123 characteristic of LivG
(Leucine-Isoleucine-Valine) homologs. The branched-chain
amino acid transporter from E. coli comprises a
heterodimer of ABCs (LivF and LivG), a heterodimer of
six-helix TM domains (LivM and LivH), and one of two
alternative soluble periplasmic substrate binding
proteins (LivK or LivJ).
Length = 236
Score = 48.2 bits (116), Expect = 1e-06
Identities = 12/33 (36%), Positives = 23/33 (69%)
Query: 247 GISGEFKAGQLTAIMGPSGAGKSTLLNILAGLT 279
+S + G++ ++GP+GAGK+TL N+++G
Sbjct: 18 DVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFL 50
>gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of
iron-sulfur clusters transporter, subfamily C. ATM1 is
an ABC transporter that is expressed in the
mitochondria. Although the specific function of ATM1 is
unknown, its disruption results in the accumulation of
excess mitochondrial iron, loss of mitochondrial
cytochromes, oxidative damage to mitochondrial DNA, and
decreased levels of cytosolic heme proteins. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 236
Score = 48.0 bits (115), Expect = 1e-06
Identities = 16/35 (45%), Positives = 24/35 (68%)
Query: 241 NKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNIL 275
+ +L +S AG+ AI+GPSG+GKST+L +L
Sbjct: 13 GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLL 47
>gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of
polysaccharide transport system. The KpsT/Wzt ABC
transporter subfamily is involved in extracellular
polysaccharide export. Among the variety of
membrane-linked or extracellular polysaccharides
excreted by bacteria, only capsular polysaccharides,
lipopolysaccharides, and teichoic acids have been shown
to be exported by ABC transporters. A typical system is
made of a conserved integral membrane and an ABC. In
addition to these proteins, capsular polysaccharide
exporter systems require two 'accessory' proteins to
perform their function: a periplasmic (E.coli) or a
lipid-anchored outer membrane protein called OMA
(Neisseria meningitidis and Haemophilus influenza) and a
cytoplasmic membrane protein MPA2.
Length = 224
Score = 47.9 bits (115), Expect = 1e-06
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLT 279
L +S E G+ ++G +GAGKSTLL +LAG+
Sbjct: 35 FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIY 72
>gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding
protein UrtE. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity [Transport and binding proteins,
Amino acids, peptides and amines].
Length = 230
Score = 47.9 bits (115), Expect = 2e-06
Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 243 EILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
IL G+S E G++T ++G +G GK+TLL L GL
Sbjct: 14 HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGL 49
>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein.
[Transport and binding proteins, Anions].
Length = 237
Score = 47.9 bits (114), Expect = 2e-06
Identities = 19/34 (55%), Positives = 25/34 (73%)
Query: 245 LHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
L ++ E G L A++GPSG+GKSTLL I+AGL
Sbjct: 16 LDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGL 49
>gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease
protein; Provisional.
Length = 648
Score = 48.6 bits (116), Expect = 2e-06
Identities = 21/36 (58%), Positives = 28/36 (77%)
Query: 243 EILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
E+L GIS + AG++ AI+G SG+GKSTL+NIL L
Sbjct: 22 EVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCL 57
Score = 27.8 bits (62), Expect = 9.2
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 97 LDSSSCSQCVSLLANLAKQGRTVVATIHTP 126
LDS S + +++L L +G TV+ H P
Sbjct: 175 LDSHSGEEVMAILHQLRDRGHTVIIVTHDP 204
>gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 47.4 bits (113), Expect = 2e-06
Identities = 20/44 (45%), Positives = 30/44 (68%)
Query: 234 HNPADFLNKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAG 277
H AD+ K L I+ ++G+L ++GPSG GK+TLLN++AG
Sbjct: 6 HLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAG 49
>gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit;
Provisional.
Length = 257
Score = 47.4 bits (113), Expect = 2e-06
Identities = 18/40 (45%), Positives = 26/40 (65%)
Query: 239 FLNKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
+ + +L+ + AGQ A++G SG GKSTLL +LAGL
Sbjct: 22 YGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGL 61
>gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding
protein YecC; Provisional.
Length = 250
Score = 47.4 bits (113), Expect = 3e-06
Identities = 19/34 (55%), Positives = 26/34 (76%)
Query: 239 FLNKEILHGISGEFKAGQLTAIMGPSGAGKSTLL 272
F + +LHGI E K G++ AI+GPSG+GK+TLL
Sbjct: 13 FHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLL 46
>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated
ATPase domains [General function prediction only].
Length = 530
Score = 48.0 bits (115), Expect = 3e-06
Identities = 18/39 (46%), Positives = 24/39 (61%)
Query: 241 NKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLT 279
+ +L +S G AI+GP+GAGKSTLL +LAG
Sbjct: 334 GRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGEL 372
Score = 44.2 bits (105), Expect = 5e-05
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 239 FLNKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
+ ++ +L +S G+ ++G +GAGKSTLL ILAG
Sbjct: 13 YGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGE 52
>gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport
system, ATPase component [Carbohydrate transport and
metabolism / Cell envelope biogenesis, outer membrane].
Length = 249
Score = 47.2 bits (113), Expect = 3e-06
Identities = 17/38 (44%), Positives = 23/38 (60%)
Query: 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLT 279
L IS E G+ I+G +GAGKSTLL ++AG+
Sbjct: 40 FWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIY 77
>gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 46.9 bits (112), Expect = 3e-06
Identities = 18/38 (47%), Positives = 25/38 (65%)
Query: 241 NKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
K IL+ +S G++TA++GP+G GKSTLL A L
Sbjct: 14 TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARL 51
>gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 46.6 bits (110), Expect = 4e-06
Identities = 21/35 (60%), Positives = 26/35 (74%)
Query: 241 NKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNIL 275
N E LHGIS +F+ +LTA++GPSG GKST L L
Sbjct: 16 NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCL 50
>gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC
transporter, ATP-binding protein. Members of this
protein family are ABC transporter ATP-binding subunits,
part of a three-gene putative bacteriocin transport
operon. The other subunits include another ATP-binding
subunit (TIGR03796), which has an N-terminal leader
sequence cleavage domain, and an HlyD homolog
(TIGR03794). In a number of genomes, members of protein
families related to nitrile hydratase alpha subunit or
to nif11 have undergone paralogous family expansions,
with members possessing a putative bacteriocin cleavage
region ending with a classic Gly-Gly motif. Those sets
of putative bacteriocins, members of this protein family
and its partners TIGR03794 and TIGR03796, and
cyclodehydratase/docking scaffold fusion proteins of
thiazole/oxazole biosynthesis frequently show correlated
species distribution and co-clustering within many of
those genomes [Transport and binding proteins, Amino
acids, peptides and amines, Cellular processes,
Biosynthesis of natural products].
Length = 686
Score = 47.6 bits (114), Expect = 4e-06
Identities = 18/34 (52%), Positives = 25/34 (73%)
Query: 244 ILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAG 277
IL +S + + G+ AI+GPSG+GKSTLL +L G
Sbjct: 468 ILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLG 501
>gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 46.7 bits (111), Expect = 4e-06
Identities = 16/35 (45%), Positives = 24/35 (68%)
Query: 244 ILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
L +S +G+L ++GPSG GK+TLLN++AG
Sbjct: 20 ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGF 54
>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter;
Provisional.
Length = 588
Score = 47.3 bits (113), Expect = 4e-06
Identities = 18/31 (58%), Positives = 24/31 (77%)
Query: 245 LHGISGEFKAGQLTAIMGPSGAGKSTLLNIL 275
+ +S E K GQ AI+GP+GAGKSTL+N+L
Sbjct: 351 VEDVSFEAKPGQTVAIVGPTGAGKSTLINLL 381
>gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit;
Provisional.
Length = 232
Score = 46.5 bits (111), Expect = 5e-06
Identities = 17/25 (68%), Positives = 22/25 (88%)
Query: 253 KAGQLTAIMGPSGAGKSTLLNILAG 277
+ G+ AI+GPSGAGKSTLLN++AG
Sbjct: 23 ERGERVAILGPSGAGKSTLLNLIAG 47
>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein. This model
describes glucan exporter ATP binding protein in
bacteria. It belongs to the larger ABC transporter
superfamily with the characteristic ATP binding motif.
The In general, this protein is in some ways implicated
in osmoregulation and suggested to participate in the
export of glucan from the cytoplasm to periplasm. The
cyclic beta-1,2-glucan in the bactrerial periplasmic
space is suggested to confer the property of high
osmolority. It has also been demonstrated that mutants
in this loci have lost functions of virulence and
motility. It is unclear as to how virulence and
osmoadaptaion are related [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 585
Score = 47.2 bits (112), Expect = 5e-06
Identities = 20/39 (51%), Positives = 29/39 (74%), Gaps = 1/39 (2%)
Query: 238 DFLN-KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNIL 275
+F N + + +S E KAGQ AI+GP+GAGK+TL+N+L
Sbjct: 343 EFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLL 381
>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component
[Carbohydrate transport and metabolism].
Length = 500
Score = 47.1 bits (113), Expect = 5e-06
Identities = 16/33 (48%), Positives = 25/33 (75%)
Query: 245 LHGISGEFKAGQLTAIMGPSGAGKSTLLNILAG 277
L G+S + G++ A++G +GAGKSTL+ IL+G
Sbjct: 24 LDGVSLTVRPGEVHALLGENGAGKSTLMKILSG 56
>gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the
cell division transporter. FtsE is a hydrophilic
nucleotide-binding protein that binds FtsX to form a
heterodimeric ATP-binding cassette (ABC)-type
transporter that associates with the bacterial inner
membrane. The FtsE/X transporter is thought to be
involved in cell division and is important for assembly
or stability of the septal ring.
Length = 214
Score = 46.2 bits (110), Expect = 5e-06
Identities = 16/33 (48%), Positives = 22/33 (66%)
Query: 245 LHGISGEFKAGQLTAIMGPSGAGKSTLLNILAG 277
L GI+ AG+ ++GPSGAGKSTLL ++
Sbjct: 17 LDGINISISAGEFVFLVGPSGAGKSTLLKLIYK 49
>gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose
transporter, MalK. ATP binding cassette (ABC) proteins
function from bacteria to human, mediating the
translocation of substances into and out of cells or
organelles. ABC transporters contain two
transmembrane-spanning domains (TMDs) or subunits and
two nucleotide binding domains (NBDs) or subunits that
couple transport to the hydrolysis of ATP. In the
maltose transport system, the periplasmic maltose
binding protein (MBP) stimulates the ATPase activity of
the membrane-associated transporter, which consists of
two transmembrane subunits, MalF and MalG, and two
copies of the ATP binding subunit, MalK, and becomes
tightly bound to the transporter in the catalytic
transition state, ensuring that maltose is passed to the
transporter as ATP is hydrolyzed.
Length = 213
Score = 45.7 bits (109), Expect = 6e-06
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 239 FLNKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
F N L ++ + G+ ++GPSG GK+T L ++AGL
Sbjct: 10 FGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGL 49
>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family.
Members of this protein family have two copies of the
ABC transporter ATP-binding cassette, but are found
outside the common ABC transporter operon structure that
features integral membrane permease proteins and
substrate-binding proteins encoded next to the
ATP-binding cassette (ABC domain) protein. The member
protein ChvD from Agrobacterium tumefaciens was
identified as both a candidate to interact with VirB8,
based on yeast two-hybrid analysis, and as an apparent
regulator of VirG. The general function of this protein
family is unknown.
Length = 552
Score = 46.8 bits (112), Expect = 6e-06
Identities = 20/38 (52%), Positives = 25/38 (65%)
Query: 241 NKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
KEIL IS F G ++G +GAGKSTLL I+AG+
Sbjct: 17 KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGV 54
Score = 34.5 bits (80), Expect = 0.051
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 254 AGQLTAIMGPSGAGKSTLLNILAG 277
G + ++GP+GAGKSTL ++ G
Sbjct: 347 PGGIVGVIGPNGAGKSTLFRMITG 370
>gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of
bacteriocin exporters, subfamily C. Many
non-lantibiotic bacteriocins of lactic acid bacteria are
produced as precursors which have N-terminal leader
peptides that share similarities in amino acid sequence
and contain a conserved processing site of two glycine
residues in positions -1 and -2. A dedicated ATP-binding
cassette (ABC) transporter is responsible for the
proteolytic cleavage of the leader peptides and
subsequent translocation of the bacteriocins across the
cytoplasmic membrane.
Length = 220
Score = 45.7 bits (109), Expect = 7e-06
Identities = 18/34 (52%), Positives = 24/34 (70%)
Query: 245 LHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
L +S +AG+ AI+G G+GKSTLL +LAGL
Sbjct: 20 LDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGL 53
>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein;
Provisional.
Length = 501
Score = 46.4 bits (111), Expect = 8e-06
Identities = 20/33 (60%), Positives = 26/33 (78%)
Query: 245 LHGISGEFKAGQLTAIMGPSGAGKSTLLNILAG 277
L IS + +AGQ+ A+MG +GAGKSTLL IL+G
Sbjct: 20 LDDISFDCRAGQVHALMGENGAGKSTLLKILSG 52
>gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd
biosynthesis, fused ATPase and permease components
[Energy production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 573
Score = 46.6 bits (111), Expect = 9e-06
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 244 ILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
L + G+ AI+G SG+GKSTLL +LAG
Sbjct: 353 ALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGA 387
>gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an
uncharacterized transporter similar in sequence to NatA.
NatA is the ATPase component of a bacterial ABC-type
Na+ transport system called NatAB, which catalyzes
ATP-dependent electrogenic Na+ extrusion without
mechanically coupled to proton or K+ uptake. NatB
possess six putative membrane spanning regions at its
C-terminus. In B. subtilis, NatAB is inducible by agents
such as ethanol and protonophores, which lower the
proton-motive force across the membrane. The closest
sequence similarity to NatA is exhibited by DrrA of the
two-component daunorubicin- and doxorubicin-efflux
system. Hence, the functional NatAB is presumably
assembled with two copies of the single ATP-binding
protein and the single integral membrane protein.
Length = 236
Score = 45.4 bits (108), Expect = 9e-06
Identities = 18/41 (43%), Positives = 26/41 (63%)
Query: 238 DFLNKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
+ E L GIS + G++ +GP+GAGK+T L IL+GL
Sbjct: 30 KYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGL 70
>gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter,
ATP-binding protein. This small clade of ABC-type
transporter ATP-binding protein components is found as a
three gene cassette along with a periplasmic
substrate-binding protein (TIGR03868) and a permease
(TIGR03869). The organisms containing this cassette are
all Actinobacteria and all contain numerous genes
requiring the coenzyme F420. This model was defined
based on five such organisms, four of which are lacking
all F420 biosynthetic capability save the final
side-chain polyglutamate attachment step (via the gene
cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and
marine actinobacterium PHSC20C1 this cassette is in an
apparent operon with the cofE gene and, in PHSC20C1,
also with a F420-dependent glucose-6-phosphate
dehydrogenase (TIGR03554). Based on these observations
we propose that this ATP-binding protein is a component
of an F420-0 (that is, F420 lacking only the
polyglutamate tail) transporter.
Length = 256
Score = 45.6 bits (108), Expect = 9e-06
Identities = 17/35 (48%), Positives = 24/35 (68%)
Query: 244 ILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
I+ G+ G LT ++GP+G+GKSTLL +LAG
Sbjct: 16 IVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGA 50
>gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex.
Length = 530
Score = 46.2 bits (110), Expect = 1e-05
Identities = 34/116 (29%), Positives = 49/116 (42%), Gaps = 19/116 (16%)
Query: 181 GRTVVATIHTPSALLFEKFDSLYALAKGHCIYRGSISRLVPHL-ASLGLPCPAYHNPADF 239
T+ + P A FE F +L A A+ R + R+V L A+ + +
Sbjct: 270 PVTLAVLVLLPLAA-FEAFAALPAAAQQLTRVRAAAERIVEVLDAAGPVAEGSAPAAGAV 328
Query: 240 L-----------------NKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
+L G+S + G+ AI+GPSG+GKSTLL LAGL
Sbjct: 329 GLGKPTLELRDLSAGYPGAPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGL 384
>gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein
YbbL; Provisional.
Length = 225
Score = 45.1 bits (107), Expect = 1e-05
Identities = 20/37 (54%), Positives = 25/37 (67%)
Query: 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
+IL+ IS +AG+ I GPSG GKSTLL I+A L
Sbjct: 20 AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASL 56
>gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine
transporter. PotA is an ABC-type transporter and the
ATPase component of the
spermidine/putrescine-preferential uptake system
consisting of PotA, -B, -C, and -D. PotA has two domains
with the N-terminal domain containing the ATPase
activity and the residues required for homodimerization
with PotA and heterdimerization with PotB. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 232
Score = 44.9 bits (107), Expect = 1e-05
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 244 ILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLT 279
L G+S + K G+ ++GPSG GK+TLL ++AG
Sbjct: 15 ALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFE 50
>gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c
biogenesis, ATPase component [Posttranslational
modification, protein turnover, chaperones].
Length = 209
Score = 44.6 bits (106), Expect = 1e-05
Identities = 18/35 (51%), Positives = 23/35 (65%)
Query: 244 ILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
+ +S AG+ I GP+GAGK+TLL ILAGL
Sbjct: 17 LFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGL 51
>gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of
nickel/oligopeptides specific transporters. The ABC
transporter subfamily specific for the transport of
dipeptides, oligopeptides (OppD), and nickel (NikDE).
The NikABCDE system of E. coli belongs to this family
and is composed of the periplasmic binding protein NikA,
two integral membrane components (NikB and NikC), and
two ATPase (NikD and NikE). The NikABCDE transporter is
synthesized under anaerobic conditions to meet the
increased demand for nickel resulting from hydrogenase
synthesis. The molecular mechanism of nickel uptake in
many bacteria and most archaea is not known. Many other
members of this ABC family are also involved in the
uptake of dipeptides and oligopeptides. The oligopeptide
transport system (Opp) is a five-component ABC transport
composed of a membrane-anchored substrate binding
proteins (SRP), OppA, two transmembrane proteins, OppB
and OppC, and two ATP-binding domains, OppD and OppF.
Length = 228
Score = 44.8 bits (107), Expect = 1e-05
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 243 EILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
+ L +S K G+ ++G SG+GKSTL + GL
Sbjct: 19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGL 54
>gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 250
Score = 45.3 bits (108), Expect = 1e-05
Identities = 13/34 (38%), Positives = 25/34 (73%)
Query: 245 LHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
++ +S E + G++ ++GP+GAGK+TL N++ G
Sbjct: 20 VNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGF 53
>gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster
assembly, permease and ATPase components
[Posttranslational modification, protein turnover,
chaperones].
Length = 497
Score = 45.8 bits (109), Expect = 1e-05
Identities = 18/35 (51%), Positives = 24/35 (68%)
Query: 241 NKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNIL 275
+ IL+GIS G+ AI+G SGAGKST+L +L
Sbjct: 275 RRPILNGISFTIPLGKTVAIVGESGAGKSTILRLL 309
>gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein;
Reviewed.
Length = 556
Score = 45.9 bits (110), Expect = 1e-05
Identities = 19/38 (50%), Positives = 25/38 (65%)
Query: 241 NKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
K+IL IS F G ++G +GAGKSTLL I+AG+
Sbjct: 19 KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGV 56
Score = 33.6 bits (78), Expect = 0.10
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 260 IMGPSGAGKSTLLNILAGL 278
I+GP+GAGKSTL ++ G
Sbjct: 355 IIGPNGAGKSTLFKMITGQ 373
>gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 44.9 bits (106), Expect = 2e-05
Identities = 20/43 (46%), Positives = 27/43 (62%)
Query: 239 FLNKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYL 281
F E+L G++ E +TA+MGPSG+GKSTLL + L L
Sbjct: 13 FGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIEL 55
>gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid
transporters, subfamily A. The ABCA subfamily mediates
the transport of a variety of lipid compounds. Mutations
of members of ABCA subfamily are associated with human
genetic diseases, such as, familial high-density
lipoprotein (HDL) deficiency, neonatal surfactant
deficiency, degenerative retinopathies, and congenital
keratinization disorders. The ABCA1 protein is involved
in disorders of cholesterol transport and high-density
lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein
transports vitamin A derivatives in the outer segments
of photoreceptor cells, and therefore, performs a
crucial step in the visual cycle. The ABCA genes are not
present in yeast. However, evolutionary studies of ABCA
genes indicate that they arose as transporters that
subsequently duplicated and that certain sets of ABCA
genes were lost in different eukaryotic lineages.
Length = 220
Score = 44.8 bits (107), Expect = 2e-05
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 247 GISGEFKAGQLTAIMGPSGAGKSTLLNILAGLT 279
+S G++ ++G +GAGK+T L +L G
Sbjct: 20 DLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGEL 52
Score = 32.1 bits (74), Expect = 0.21
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Query: 12 LTG----SSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLK 64
LTG +SG +NG ++ + + Y Q DAL +LTV E + + LK
Sbjct: 48 LTGELRPTSGTAYINGYSIRTD-RKAARQSLGYCPQFDALFDELTVREHLRFYARLK 103
>gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette
domain of the molybdenum transport system. ModC is an
ABC-type transporter and the ATPase component of a
molybdate transport system that also includes the
periplasmic binding protein ModA and the membrane
protein ModB. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 214
Score = 44.6 bits (106), Expect = 2e-05
Identities = 15/25 (60%), Positives = 18/25 (72%)
Query: 255 GQLTAIMGPSGAGKSTLLNILAGLT 279
++T I G SGAGKSTLL +AGL
Sbjct: 23 EEVTGIFGASGAGKSTLLRCIAGLE 47
>gnl|CDD|217416 pfam03193, DUF258, Protein of unknown function, DUF258.
Length = 161
Score = 43.7 bits (104), Expect = 2e-05
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 254 AGQLTAIMGPSGAGKSTLLNILAG 277
G+ + + G SG GKSTLLN L
Sbjct: 34 KGKTSVLAGQSGVGKSTLLNALLP 57
>gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 223
Score = 44.9 bits (106), Expect = 2e-05
Identities = 21/35 (60%), Positives = 25/35 (71%)
Query: 244 ILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
IL+ IS +AG+ AI GPSG GKSTLL I+A L
Sbjct: 18 ILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASL 52
>gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 588
Score = 45.6 bits (109), Expect = 2e-05
Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 248 ISGEFKAGQLTAIMGPSGAGKSTLLNILAG 277
++ AGQ A++GPSGAGK++LLN L G
Sbjct: 369 LNFTLPAGQRIALVGPSGAGKTSLLNALLG 398
>gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 204
Score = 44.4 bits (106), Expect = 2e-05
Identities = 19/34 (55%), Positives = 24/34 (70%)
Query: 246 HGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLT 279
G+S AG+L I GP+GAGK++LL ILAGL
Sbjct: 18 SGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLA 51
>gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport
system. The ABC transporters belonging to the YhbG
family are similar to members of the Mj1267_LivG family,
which is involved in the transport of branched-chain
amino acids. The genes yhbG and yhbN are located in a
single operon and may function together in cell envelope
during biogenesis. YhbG is the putative ATP-binding
cassette component and YhbN is the putative
periplasmic-binding protein. Depletion of each gene
product leads to growth arrest, irreversible cell damage
and loss of viability in E. coli. The YhbG homolog
(NtrA) is essential in Rhizobium meliloti, a symbiotic
nitrogen-fixing bacterium.
Length = 232
Score = 44.5 bits (106), Expect = 2e-05
Identities = 13/39 (33%), Positives = 27/39 (69%)
Query: 241 NKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLT 279
+++++G+S K G++ ++GP+GAGK+T ++ GL
Sbjct: 12 KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLV 50
>gnl|CDD|206747 cd01854, YjeQ_EngC, Ribosomal interacting GTPase YjeQ/EngC, a
circularly permuted subfamily of the Ras GTPases. YjeQ
(YloQ in Bacillus subtilis) is a ribosomal small
subunit-dependent GTPase; hence also known as RsgA. YjeQ
is a late-stage ribosomal biogenesis factor involved in
the 30S subunit maturation, and it represents a protein
family whose members are broadly conserved in bacteria
and have been shown to be essential to the growth of E.
coli and B. subtilis. Proteins of the YjeQ family
contain all sequence motifs typical of the vast class of
P-loop-containing GTPases, but show a circular
permutation, with a G4-G1-G3 pattern of motifs as
opposed to the regular G1-G3-G4 pattern seen in most
GTPases. All YjeQ family proteins display a unique
domain architecture, which includes an N-terminal
OB-fold RNA-binding domain, the central permuted GTPase
domain, and a zinc knuckle-like C-terminal cysteine
domain.
Length = 211
Score = 44.3 bits (106), Expect = 2e-05
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 254 AGQLTAIMGPSGAGKSTLLNILAG 277
G+ + ++G SG GKSTLLN L
Sbjct: 84 KGKTSVLVGQSGVGKSTLLNALLP 107
>gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 263
Score = 45.0 bits (107), Expect = 2e-05
Identities = 19/43 (44%), Positives = 25/43 (58%)
Query: 235 NPADFLNKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAG 277
L K L+G+S E G ++G +GAGKSTLLN +AG
Sbjct: 12 FKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAG 54
Score = 28.4 bits (64), Expect = 3.5
Identities = 33/135 (24%), Positives = 57/135 (42%), Gaps = 21/135 (15%)
Query: 5 LNVQSIRLTGSSGKILVNGQE--RKSACIEQFLKLSCYIQQDDALR--PKLTVTEAMMIA 60
LN + L +SG+IL++G + +KS + L + QD P+LT+ E + +A
Sbjct: 49 LNAIAGDLKPTSGQILIDGVDVTKKSV--AKRANLLARVFQDPLAGTAPELTIEENLALA 106
Query: 61 ----SHLKLGFKVSTQEKK-DQVSLELWNNFCKKKKKKKRGLDSSSCSQCVSLLANLAKQ 115
L ++ + + + L + + + GL S Q +SLL
Sbjct: 107 ESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLL------ 160
Query: 116 GRTVVATIHTPSALL 130
+AT+H P LL
Sbjct: 161 ----MATLHPPKILL 171
>gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein
YrbF; Provisional.
Length = 269
Score = 44.8 bits (106), Expect = 2e-05
Identities = 19/37 (51%), Positives = 25/37 (67%)
Query: 241 NKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAG 277
N+ I IS G++TAIMGPSG GK+TLL ++ G
Sbjct: 19 NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGG 55
>gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional.
Length = 248
Score = 44.5 bits (106), Expect = 2e-05
Identities = 17/32 (53%), Positives = 25/32 (78%)
Query: 248 ISGEFKAGQLTAIMGPSGAGKSTLLNILAGLT 279
+S E +AG++ ++GP+GAGKSTLL +AGL
Sbjct: 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGLL 46
>gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter,
ATP-binding protein. This ABC transporter ATP-binding
protein is found in a number of genomes in operon-like
contexts strongly suggesting a substrate specificity for
2-aminoethylphosphonate (2-AEP). The characterized
PhnSTUV system is absent in the genomes in which this
system is found. These genomes encode systems for the
catabolism of 2-AEP, making the need for a
2-AEP-specific transporter likely [Transport and binding
proteins, Amino acids, peptides and amines].
Length = 353
Score = 45.0 bits (107), Expect = 2e-05
Identities = 19/41 (46%), Positives = 24/41 (58%)
Query: 238 DFLNKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
F L IS K G+ ++GPSG GK+TLL I+AGL
Sbjct: 13 RFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGL 53
>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein.
This model describes the energy-transducing ATPase
subunit ThiQ of the ThiBPQ thiamine (and thiamine
pyrophosphate) ABC transporter in several
Proteobacteria. This protein is found so far only in
Proteobacteria, and is found in complete genomes only if
the ThiB and ThiP subunits are also found [Transport and
binding proteins, Other].
Length = 213
Score = 44.5 bits (105), Expect = 2e-05
Identities = 18/24 (75%), Positives = 22/24 (91%)
Query: 254 AGQLTAIMGPSGAGKSTLLNILAG 277
G++ AIMGPSGAGKSTLLN++AG
Sbjct: 23 DGEIVAIMGPSGAGKSTLLNLIAG 46
>gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit;
Provisional.
Length = 233
Score = 44.4 bits (105), Expect = 2e-05
Identities = 18/39 (46%), Positives = 28/39 (71%)
Query: 240 LNKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
+ ++LH +S G++ AI+G SG+GKSTLL++L GL
Sbjct: 20 VQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGL 58
>gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation
factor 3, subfamily F. Elongation factor 3 (EF-3) is a
cytosolic protein required by fungal ribosomes for in
vitro protein synthesis and for in vivo growth. EF-3
stimulates the binding of the EF-1: GTP: aa-tRNA ternary
complex to the ribosomal A site by facilitated release
of the deacylated tRNA from the E site. The reaction
requires ATP hydrolysis. EF-3 contains two ATP
nucleotide binding sequence (NBS) motifs. NBSI is
sufficient for the intrinsic ATPase activity. NBSII is
essential for the ribosome-stimulated functions.
Length = 144
Score = 43.2 bits (103), Expect = 2e-05
Identities = 16/39 (41%), Positives = 23/39 (58%)
Query: 239 FLNKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAG 277
+ K +L IS G ++G +GAGKSTLL ++AG
Sbjct: 10 YGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAG 48
>gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA
family. Members of this protein family are found mostly
in the Cyanobacteria, but also in the Planctomycetes.
Cyanobacterial examples are involved in heterocyst
formation, by which some fraction of members of the
colony undergo a developmental change and become capable
of nitrogen fixation. The DevBCA proteins are thought
export of either heterocyst-specific glycolipids or an
enzyme essential for formation of the laminated layer
found in heterocysts.
Length = 220
Score = 44.2 bits (105), Expect = 2e-05
Identities = 17/39 (43%), Positives = 27/39 (69%)
Query: 240 LNKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
L K++L I+ E G++ + GPSG+GK+TLL ++ GL
Sbjct: 16 LRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGL 54
>gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase
and permease components [General function prediction
only].
Length = 580
Score = 45.3 bits (108), Expect = 2e-05
Identities = 20/36 (55%), Positives = 25/36 (69%)
Query: 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAG 277
K IL GIS +AG+ I+GPSG+GKSTL +L G
Sbjct: 349 KPILKGISFALQAGEALGIIGPSGSGKSTLARLLVG 384
>gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial
lipid flippase and related proteins, subfamily C. MsbA
is an essential ABC transporter, closely related to
eukaryotic MDR proteins. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 234
Score = 44.1 bits (105), Expect = 2e-05
Identities = 16/34 (47%), Positives = 25/34 (73%)
Query: 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNIL 275
+L IS + AG+ A++GPSG+GKSTL+N++
Sbjct: 15 PPVLRDISLDIPAGETVALVGPSGSGKSTLVNLI 48
>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding
protein LsrA; Provisional.
Length = 510
Score = 45.0 bits (107), Expect = 2e-05
Identities = 18/37 (48%), Positives = 27/37 (72%)
Query: 243 EILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLT 279
E+L GI AG++ A++G +GAGKSTL+ I+AG+
Sbjct: 25 EVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIV 61
>gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding
protein ModF; Provisional.
Length = 490
Score = 45.0 bits (107), Expect = 3e-05
Identities = 17/36 (47%), Positives = 26/36 (72%)
Query: 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAG 277
+ ILH +S + G+ I+GP+GAGKSTLL+++ G
Sbjct: 273 RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITG 308
>gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein;
Provisional.
Length = 272
Score = 44.2 bits (105), Expect = 3e-05
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 241 NKEILHGISGEFKAGQLTAIMGPSGAGKSTLL 272
+K+ L IS ++TA +GPSG GKSTLL
Sbjct: 37 DKQALFDISMRIPKNRVTAFIGPSGCGKSTLL 68
>gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC
transporter, PrtD family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion [Protein fate, Protein and
peptide secretion and trafficking].
Length = 544
Score = 44.6 bits (106), Expect = 3e-05
Identities = 19/37 (51%), Positives = 25/37 (67%)
Query: 241 NKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAG 277
K L GIS +AG+ AI+GPSG+GKSTL ++ G
Sbjct: 330 KKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVG 366
>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and
permease components [Defense mechanisms].
Length = 567
Score = 44.7 bits (106), Expect = 3e-05
Identities = 18/38 (47%), Positives = 25/38 (65%)
Query: 241 NKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
K +L IS + G+ AI+GPSG+GKSTL+ +L L
Sbjct: 341 KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRL 378
>gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 43.9 bits (104), Expect = 4e-05
Identities = 17/34 (50%), Positives = 25/34 (73%)
Query: 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNIL 275
KE + GI +F+ ++TA++GPSG+GKST L L
Sbjct: 33 KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSL 66
>gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase
component/photorepair protein PhrA [Inorganic ion
transport and metabolism].
Length = 257
Score = 43.8 bits (104), Expect = 4e-05
Identities = 18/37 (48%), Positives = 27/37 (72%)
Query: 241 NKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAG 277
K+IL +S + G+ AI+GP+GAGK+TLL++L G
Sbjct: 43 GKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTG 79
>gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA. This
model describes the cyt c biogenesis protein encoded by
ccmA in bacteria. An exception is, an arabidopsis
protein. Quite likely this is encoded by an organelle.
Bacterial c-type cytocromes are located on the
periplasmic side of the cytoplasmic membrane. Several
gene products encoded in a locus designated as 'ccm' are
implicated in the transport and assembly of the
functional cytochrome C. This cluster includes genes:
ccmA;B;C;D;E;F;G and H. The posttranslational pathway
includes the transport of heme moiety, the secretion of
the apoprotein and the covalent attachment of the heme
with the apoprotein. The proteins ccmA and B represent
an ABC transporter; ccmC and D participate in heme
transfer to ccmE, which function as a periplasmic heme
chaperone. The presence of ccmF, G and H is suggested to
be obligatory for the final functional assembly of
cytochrome c [Protein fate, Protein and peptide
secretion and trafficking, Transport and binding
proteins, Other].
Length = 198
Score = 43.1 bits (102), Expect = 4e-05
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 243 EILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
+ G+S AG+ + GP+G GK+TLL ILAGL
Sbjct: 14 MLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGL 49
>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional.
Length = 590
Score = 44.4 bits (106), Expect = 4e-05
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 11/54 (20%)
Query: 240 LNKEILH--GISGEF--------KAGQLTAIMGPSGAGKSTLLNILAGLTYLNF 283
L +E +H G++G F K G++T I+GP+G GK+T + IL+G N
Sbjct: 75 LEEEPVHRYGVNG-FKLYGLPIPKEGKVTGILGPNGIGKTTAVKILSGELIPNL 127
Score = 35.2 bits (82), Expect = 0.037
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 249 SGEFKAGQLTAIMGPSGAGKSTLLNILAG 277
GE G++ I+GP+G GK+T +LAG
Sbjct: 359 GGEIYEGEVIGIVGPNGIGKTTFAKLLAG 387
>gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 241
Score = 43.6 bits (103), Expect = 4e-05
Identities = 19/34 (55%), Positives = 26/34 (76%)
Query: 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNIL 275
KEIL IS +F+ G + I+GPSGAGKSTL+ ++
Sbjct: 16 KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLI 49
>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE. This
model describes FtsE, a member of the ABC transporter
ATP-binding protein family. This protein, and its
permease partner FtsX, localize to the division site. In
a number of species, the ftsEX gene pair is located next
to FtsY, the signal recognition particle-docking protein
[Cellular processes, Cell division].
Length = 214
Score = 43.0 bits (102), Expect = 5e-05
Identities = 16/35 (45%), Positives = 22/35 (62%)
Query: 243 EILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAG 277
LH +S + G+ + GPSGAGK+TLL +L G
Sbjct: 16 AALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYG 50
>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems,
ATPase components [General function prediction only].
Length = 501
Score = 44.1 bits (105), Expect = 5e-05
Identities = 16/32 (50%), Positives = 23/32 (71%)
Query: 247 GISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
+S K G++ A++G +GAGKSTL+ IL GL
Sbjct: 22 DVSLSVKKGEIHALLGENGAGKSTLMKILFGL 53
Score = 29.8 bits (68), Expect = 1.7
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 245 LHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
+ +S E +AG++ I G +G G+S L+ ++GL
Sbjct: 274 VKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGL 307
>gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein;
Provisional.
Length = 253
Score = 43.2 bits (102), Expect = 5e-05
Identities = 19/34 (55%), Positives = 24/34 (70%)
Query: 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNIL 275
+ LH IS EF+ Q+TA++GPSG GKST L L
Sbjct: 19 FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCL 52
>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit.
This model describes the ATP binding subunit of the
multisubunit cobalt transporter in bacteria and its
equivalents in archaea. The model is restricted to ATP
subunit that is a part of the cobalt transporter, which
belongs to the ABC transporter superfamily (ATP Binding
Cassette). The model excludes ATP binding subunit that
are associated with other transporters belonging to ABC
transporter superfamily. This superfamily includes two
groups, one which catalyze the uptake of small
molecules, including ions from the external milieu and
the other group which is engaged in the efflux of small
molecular weight compounds and ions from within the
cell. Energy derived from the hydrolysis of ATP drive
the both the process of uptake and efflux [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 190
Score = 42.8 bits (101), Expect = 5e-05
Identities = 17/36 (47%), Positives = 26/36 (72%)
Query: 243 EILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
E+L G++ + G++ A++G +GAGKSTLL L GL
Sbjct: 6 EVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGL 41
>gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein;
Provisional.
Length = 260
Score = 43.5 bits (103), Expect = 5e-05
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 245 LHGISGEFKAGQLTAIMGPSGAGKSTLLNIL 275
L I+ + Q+TA +GPSG GKSTLL
Sbjct: 29 LKNINLDIAKNQVTAFIGPSGCGKSTLLRTF 59
>gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL.
Members of this family are the PhnL protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated C-P lysase complex. This protein
(PhnL) and the adjacent-encoded PhnK (TIGR02323)
resemble transporter ATP-binding proteins but are
suggested, based on mutatgenesis studies, to be part of
this C-P lyase complex rather than part of a transporter
per se.
Length = 224
Score = 42.8 bits (101), Expect = 7e-05
Identities = 19/38 (50%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 244 ILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYL 281
+L +S AG+ A+ GPSGAGKSTLL L YL
Sbjct: 23 VLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYA-NYL 59
>gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 339
Score = 43.4 bits (103), Expect = 7e-05
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 245 LHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
L +S E G++ I+G SGAGKSTLL ++ L
Sbjct: 22 LDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLL 55
>gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a
mitochondrial protein MTABC3 and related proteins.
MTABC3 (also known as ABCB6) is a mitochondrial
ATP-binding cassette protein involved in iron
homeostasis and one of four ABC transporters expressed
in the mitochondrial inner membrane, the other three
being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast
MDL1 (multidrug resistance-like protein 1) and MDL2
(multidrug resistance-like protein 2) transporters are
also included in this CD. MDL1 is an ATP-dependent
permease that acts as a high-copy suppressor of ATM1 and
is thought to have a role in resistance to oxidative
stress. Interestingly, subfamily B is more closely
related to the carboxyl-terminal component of subfamily
C than the two halves of ABCC molecules are with one
another.
Length = 238
Score = 42.9 bits (102), Expect = 7e-05
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 243 EILHGISGEFKAGQLTAIMGPSGAGKSTLLNIL 275
IL G+S G+ A++G SG GKST++++L
Sbjct: 17 PILKGLSLTIPPGKTVALVGSSGCGKSTVVSLL 49
>gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter
Associated with Antigen Processing, subfamily C. TAP
(Transporter Associated with Antigen Processing) is
essential for peptide delivery from the cytosol into the
lumen of the endoplasmic reticulum (ER), where these
peptides are loaded on major histocompatibility complex
(MHC) I molecules. Loaded MHC I leave the ER and display
their antigenic cargo on the cell surface to cytotoxic T
cells. Subsequently, virus-infected or malignantly
transformed cells can be eliminated. TAP belongs to the
large family of ATP-binding cassette (ABC) transporters,
which translocate a vast variety of solutes across
membranes.
Length = 226
Score = 42.8 bits (101), Expect = 7e-05
Identities = 18/44 (40%), Positives = 28/44 (63%), Gaps = 3/44 (6%)
Query: 232 AYHNPADFLNKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNIL 275
AY D L +L +S G++TA++GPSG+GKST++ +L
Sbjct: 20 AYPTRPDTL---VLQDVSFTLHPGEVTALVGPSGSGKSTVVALL 60
>gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein;
Provisional.
Length = 252
Score = 42.8 bits (101), Expect = 7e-05
Identities = 18/41 (43%), Positives = 29/41 (70%)
Query: 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282
K+ L+ +S +F ++TA++GPSG+GKSTLL + + LN
Sbjct: 18 KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLN 58
>gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an
uncharacterized transporter. This subgroup is related
to the subfamily A transporters involved in drug
resistance, nodulation, lipid transport, and bacteriocin
and lantibiotic immunity. In eubacteria and archaea, the
typical organization consists of one ABC and one or two
integral membranes. ABC transporters are a large family
of proteins involved in the transport of a wide variety
of different compounds, like sugars, ions, peptides and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region in addition to the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 210
Score = 42.3 bits (100), Expect = 8e-05
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 238 DFLNKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTY 280
F L IS + G++ ++GP+GAGK+T + ++ G+
Sbjct: 9 RFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIIL 51
>gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 352
Score = 43.1 bits (102), Expect = 9e-05
Identities = 14/23 (60%), Positives = 22/23 (95%)
Query: 257 LTAIMGPSGAGKSTLLNILAGLT 279
+TA+ GPSG+GK++L+N++AGLT
Sbjct: 26 ITALFGPSGSGKTSLINMIAGLT 48
>gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein
YbbA; Provisional.
Length = 228
Score = 42.5 bits (100), Expect = 9e-05
Identities = 20/35 (57%), Positives = 25/35 (71%)
Query: 244 ILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
IL G+ K G+ A++G SG+GKSTLL ILAGL
Sbjct: 25 ILTGVELVVKRGETIALIGESGSGKSTLLAILAGL 59
>gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter
subunit; Provisional.
Length = 262
Score = 42.3 bits (99), Expect = 1e-04
Identities = 18/40 (45%), Positives = 26/40 (65%)
Query: 239 FLNKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
F + LH + G++ A++GPSG+GKSTLL L+GL
Sbjct: 14 FNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGL 53
>gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell
division and chromosome partitioning].
Length = 223
Score = 41.8 bits (99), Expect = 1e-04
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAG 277
+E L +S G+ + GPSGAGKSTLL ++ G
Sbjct: 15 REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYG 50
>gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis
ATP-binding export protein. CcmA, the ATP-binding
component of the bacterial CcmAB transporter. The CCM
family is involved in bacterial cytochrome c biogenesis.
Cytochrome c maturation in E. coli requires the ccm
operon, which encodes eight membrane proteins
(CcmABCDEFGH). CcmE is a periplasmic heme chaperon that
binds heme covalently and transfers it onto
apocytochrome c in the presence of CcmF, CcmG, and CcmH.
The CcmAB proteins represent an ABC transporter and the
CcmCD proteins participate in heme transfer to CcmE.
Length = 201
Score = 41.7 bits (98), Expect = 1e-04
Identities = 17/35 (48%), Positives = 24/35 (68%)
Query: 244 ILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
+ G+S AG+ + GP+G+GK+TLL ILAGL
Sbjct: 15 LFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGL 49
>gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase
protein; Reviewed.
Length = 375
Score = 42.2 bits (100), Expect = 2e-04
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 10/45 (22%)
Query: 239 FLNKEILHGIS-----GEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
F KE++ + GEF LT ++GPSG GK+T+L ++AG
Sbjct: 24 FDGKEVISNLDLTINNGEF----LT-LLGPSGCGKTTVLRLIAGF 63
>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog
[General function prediction only].
Length = 591
Score = 42.7 bits (101), Expect = 2e-04
Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 11/56 (19%)
Query: 240 LNKEILH--GISGEFK--------AGQLTAIMGPSGAGKSTLLNILAGLTYLNFSK 285
L +E++H G++G FK G++ I+GP+G GKST L ILAG N +
Sbjct: 76 LEEEVVHRYGVNG-FKLYRLPTPRPGKVVGILGPNGIGKSTALKILAGELKPNLGR 130
Score = 37.3 bits (87), Expect = 0.007
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 249 SGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
GE G++ I+GP+G GK+T + +LAG+
Sbjct: 361 EGEIYDGEVIGILGPNGIGKTTFVKLLAGV 390
>gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of
the Na+ transporter. NatA is the ATPase component of a
bacterial ABC-type Na+ transport system called NatAB,
which catalyzes ATP-dependent electrogenic Na+ extrusion
without mechanically coupled proton or K+ uptake. NatB
possess six putative membrane spanning regions at its
C-terminus. In B. subtilis, NatAB is inducible by agents
such as ethanol and protonophores, which lower the
proton-motive force across the membrane. The closest
sequence similarity to NatA is exhibited by DrrA of the
two-component daunorubicin- and doxorubicin-efflux
system. Hence, the functional NatAB is presumably
assembled with two copies of a single ATP-binding
protein and a single integral membrane protein.
Length = 218
Score = 41.6 bits (98), Expect = 2e-04
Identities = 17/34 (50%), Positives = 26/34 (76%)
Query: 245 LHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
+ G+S K G++T ++GP+GAGK+T L +LAGL
Sbjct: 21 VDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGL 54
>gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed.
Length = 251
Score = 41.6 bits (98), Expect = 2e-04
Identities = 17/41 (41%), Positives = 28/41 (68%)
Query: 239 FLNKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLT 279
F + +L +S E K G++ ++GP+GAGKSTL+ ++ GL
Sbjct: 14 FGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLV 54
>gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein;
Reviewed.
Length = 240
Score = 41.6 bits (98), Expect = 2e-04
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 239 FLNKEILHGISGEFKAGQLTAIMGPSGAGKSTLL 272
F ++LH I G++ I+GPSG+GKSTLL
Sbjct: 11 FGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLL 44
>gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette
domain of methionine transporter. MetN (also known as
YusC) is an ABC-type transporter encoded by metN of the
metNPQ operon in Bacillus subtilis that is involved in
methionine transport. Other members of this system
include the MetP permease and the MetQ substrate binding
protein. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 233
Score = 41.4 bits (98), Expect = 2e-04
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 243 EILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
L +S G++ I+G SGAGKSTL+ + GL
Sbjct: 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGL 54
>gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase
component [Coenzyme metabolism].
Length = 248
Score = 41.4 bits (97), Expect = 2e-04
Identities = 18/32 (56%), Positives = 27/32 (84%)
Query: 248 ISGEFKAGQLTAIMGPSGAGKSTLLNILAGLT 279
+SGE +AG++ ++GP+GAGKSTLL +AG+T
Sbjct: 18 LSGEVRAGEILHLVGPNGAGKSTLLARMAGMT 49
>gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein;
Provisional.
Length = 250
Score = 41.6 bits (98), Expect = 2e-04
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 241 NKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNIL 275
+ + L I+ + + Q+TA++GPSG GKST L L
Sbjct: 15 DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTL 49
>gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 41.5 bits (97), Expect = 2e-04
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNIL 275
E L GI +F ++TA++GPSG GKST L L
Sbjct: 18 FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTL 51
>gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component
[Energy production and conversion / Inorganic ion
transport and metabolism].
Length = 245
Score = 41.2 bits (97), Expect = 2e-04
Identities = 14/31 (45%), Positives = 24/31 (77%)
Query: 248 ISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
+S E + G++T ++G +GAGK+TLL ++A L
Sbjct: 21 VSFEAEEGEITGLLGENGAGKTTLLRMIATL 51
>gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding
protein. DrrA is the ATP-binding protein component of a
bacterial exporter complex that confers resistance to
the antibiotics daunorubicin and doxorubicin. In
addition to DrrA, the complex includes an integral
membrane protein called DrrB. DrrA belongs to the ABC
family of transporters and shares sequence and
functional similarities with a protein found in cancer
cells called P-glycoprotein. ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region in
addition to the Walker A motif/P-loop and Walker B motif
commonly found in a number of ATP- and GTP-binding and
hydrolyzing proteins.
Length = 220
Score = 41.2 bits (97), Expect = 2e-04
Identities = 13/37 (35%), Positives = 24/37 (64%)
Query: 243 EILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLT 279
E + G+S + G++ ++GP+GAGK+T + +L L
Sbjct: 14 EAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLL 50
>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system,
component A2. The enzyme that catalyzes the final step
in methanogenesis, methyl coenzyme M reductase, contains
alpha, beta, and gamma chains. In older literature, the
complex of alpha, beta, and gamma chains was termed
component C, while this single chain protein was termed
methyl coenzyme M reductase system component A2 [Energy
metabolism, Methanogenesis].
Length = 520
Score = 42.1 bits (99), Expect = 2e-04
Identities = 18/41 (43%), Positives = 27/41 (65%)
Query: 238 DFLNKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
F KE+L IS + G++ I+G SGAGKS L+++L G+
Sbjct: 9 KFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGM 49
Score = 36.3 bits (84), Expect = 0.013
Identities = 16/33 (48%), Positives = 23/33 (69%)
Query: 247 GISGEFKAGQLTAIMGPSGAGKSTLLNILAGLT 279
+S E K G++ I+G SGAGK+TL I+AG+
Sbjct: 302 NVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVL 334
>gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit,
PQQ-dependent alcohol dehydrogenase system. Members of
this protein family are the ATP-binding subunit of an
ABC transporter system that is associated with PQQ
biosynthesis and PQQ-dependent alcohol dehydrogenases.
While this family shows homology to several efflux ABC
transporter subunits, the presence of a periplasmic
substrate-binding protein and association with systems
for catabolism of alcohols suggests a role in import
rather than detoxification [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 236
Score = 41.1 bits (97), Expect = 3e-04
Identities = 15/37 (40%), Positives = 24/37 (64%)
Query: 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
+ L +S + G+ A++GP+GAGKSTL ++L L
Sbjct: 14 RRALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRL 50
>gnl|CDD|224084 COG1162, COG1162, Predicted GTPases [General function prediction
only].
Length = 301
Score = 41.5 bits (98), Expect = 3e-04
Identities = 13/24 (54%), Positives = 18/24 (75%)
Query: 254 AGQLTAIMGPSGAGKSTLLNILAG 277
AG++T ++G SG GKSTL+N L
Sbjct: 163 AGKITVLLGQSGVGKSTLINALLP 186
>gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 574
Score = 41.7 bits (99), Expect = 3e-04
Identities = 16/33 (48%), Positives = 24/33 (72%)
Query: 244 ILHGISGEFKAGQLTAIMGPSGAGKSTLLNILA 276
+L G+S + KAG+ A++G +G GKSTLL +L
Sbjct: 355 VLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLT 387
>gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB
family. Type I protein secretion is a system in some
Gram-negative bacteria to export proteins (often
proteases) across both inner and outer membranes to the
extracellular medium. This is one of three proteins of
the type I secretion apparatus. Targeted proteins are
not cleaved at the N-terminus, but rather carry signals
located toward the extreme C-terminus to direct type I
secretion. This model is related to models TIGR01842 and
TIGR01846, and to bacteriocin ABC transporters that
cleave their substrates during export [Protein fate,
Protein and peptide secretion and trafficking, Cellular
processes, Pathogenesis].
Length = 694
Score = 41.8 bits (99), Expect = 3e-04
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 245 LHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
L +S + G+ AI+G G+GKSTLL +L GL
Sbjct: 481 LDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGL 514
>gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin
B, subfamily C. The ABC-transporter hemolysin B is a
central component of the secretion machinery that
translocates the toxin, hemolysin A, in a
Sec-independent fashion across both membranes of E.
coli. The hemolysin A (HlyA) transport machinery is
composed of the ATP-binding cassette (ABC) transporter
HlyB located in the inner membrane, hemolysin D (HlyD),
also anchored in the inner membrane, and TolC, which
resides in the outer membrane. HlyD apparently forms a
continuous channel that bridges the entire periplasm,
interacting with TolC and HlyB. This arrangement
prevents the appearance of periplasmic intermediates of
HlyA during substrate transport. Little is known about
the molecular details of HlyA transport, but it is
evident that ATP-hydrolysis by the ABC-transporter HlyB
is a necessary source of energy.
Length = 237
Score = 40.9 bits (96), Expect = 3e-04
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 243 EILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
IL IS K G++ I+G SG+GKSTL ++
Sbjct: 16 VILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRF 51
>gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding
protein. This model represents the ATP-binding cassette
(ABC) protein of the three subunit molybdate ABC
transporter. The three proteins of this complex are
homologous to proteins of the sulfate ABC transporter.
Molybdenum may be used in nitrogenases of
nitrogen-fixing bacteria and in molybdopterin cofactors.
In some cases, molybdate may be transported by a sulfate
transporter rather than by a specific molybdate
transporter [Transport and binding proteins, Anions].
Length = 354
Score = 41.3 bits (97), Expect = 3e-04
Identities = 14/22 (63%), Positives = 19/22 (86%)
Query: 258 TAIMGPSGAGKSTLLNILAGLT 279
TAI G SG+GK+TL+ ++AGLT
Sbjct: 26 TAIFGRSGSGKTTLIRLIAGLT 47
>gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase
component [General function prediction only].
Length = 243
Score = 40.6 bits (96), Expect = 3e-04
Identities = 12/37 (32%), Positives = 27/37 (72%)
Query: 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
+++++ +S E +G++ ++GP+GAGK+T ++ GL
Sbjct: 17 RKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGL 53
>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter. This
model describes ABC-type bacteriocin transporter. The
amino terminal domain (pfam03412) processes the
N-terminal leader peptide from the bacteriocin while
C-terminal domains resemble ABC transporter membrane
protein and ATP-binding cassette domain. In general,
bacteriocins are agents which are responsible for
killing or inhibiting the closely related species or
even different strains of the same species. Bacteriocins
are usually encoded by bacterial plasmids. Bacteriocins
are named after the species and hence in literature one
encounters various names e.g., leucocin from Leuconostic
geldium; pedicocin from Pedicoccus acidilactici; sakacin
from Lactobacillus sake etc [Protein fate, Protein and
peptide secretion and trafficking, Protein fate, Protein
modification and repair, Transport and binding proteins,
Other].
Length = 708
Score = 41.6 bits (98), Expect = 3e-04
Identities = 17/38 (44%), Positives = 20/38 (52%)
Query: 240 LNKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAG 277
IL IS K T I+G SG+GKSTL +L G
Sbjct: 485 YGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVG 522
>gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 235
Score = 40.9 bits (96), Expect = 3e-04
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 244 ILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAG 277
+L +S AG+ + GPSG+GKSTLL L
Sbjct: 26 VLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYA 59
>gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein;
Provisional.
Length = 530
Score = 41.0 bits (97), Expect = 4e-04
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 239 FLNKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAG 277
F N + ++ +AG+ AI+G +G GK+TLL L G
Sbjct: 329 FDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVG 367
Score = 29.1 bits (66), Expect = 2.7
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 248 ISGEFKAGQLTAIMGPSGAGKSTLLNILAG 277
IS +F G ++G +G GKST + IL G
Sbjct: 20 ISVKFGGGNRYGLIGANGCGKSTFMKILGG 49
>gnl|CDD|234631 PRK00098, PRK00098, GTPase RsgA; Reviewed.
Length = 298
Score = 41.0 bits (97), Expect = 4e-04
Identities = 15/24 (62%), Positives = 18/24 (75%)
Query: 254 AGQLTAIMGPSGAGKSTLLNILAG 277
AG++T + G SG GKSTLLN LA
Sbjct: 163 AGKVTVLAGQSGVGKSTLLNALAP 186
>gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein;
Provisional.
Length = 352
Score = 41.0 bits (97), Expect = 4e-04
Identities = 14/22 (63%), Positives = 19/22 (86%)
Query: 258 TAIMGPSGAGKSTLLNILAGLT 279
TAI G SGAGK++L+N ++GLT
Sbjct: 27 TAIFGRSGAGKTSLINAISGLT 48
>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular
activities. AAA - ATPases associated with a variety of
cellular activities. This profile/alignment only detects
a fraction of this vast family. The poorly conserved
N-terminal helix is missing from the alignment.
Length = 148
Score = 39.7 bits (92), Expect = 4e-04
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 255 GQLTAIMGPSGAGKSTLLNILAGLTYLNFSKC 286
G++ I+GP G+GK+TL LA
Sbjct: 2 GEVILIVGPPGSGKTTLARALARELGPPGGGV 33
>gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 272
Score = 40.6 bits (95), Expect = 4e-04
Identities = 18/34 (52%), Positives = 25/34 (73%)
Query: 244 ILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAG 277
IL +S + G++TA++G +GAGKSTLL LAG
Sbjct: 16 ILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAG 49
>gnl|CDD|234988 PRK01889, PRK01889, GTPase RsgA; Reviewed.
Length = 356
Score = 40.7 bits (96), Expect = 5e-04
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 255 GQLTAIMGPSGAGKSTLLNILAG 277
G+ A++G SG GKSTL+N L G
Sbjct: 195 GKTVALLGSSGVGKSTLVNALLG 217
>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein
MsbA. This family consists of a single polypeptide
chain transporter in the ATP-binding cassette (ABC)
transporter family, MsbA, which exports lipid A. It may
also act in multidrug resistance. Lipid A, a part of
lipopolysaccharide, is found in the outer leaflet of the
outer membrane of most Gram-negative bacteria. Members
of this family are restricted to the Proteobacteria
(although lipid A is more broadly distributed) and often
are clustered with lipid A biosynthesis genes [Cell
envelope, Biosynthesis and degradation of surface
polysaccharides and lipopolysaccharides, Transport and
binding proteins, Other].
Length = 571
Score = 41.2 bits (97), Expect = 5e-04
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 243 EILHGISGEFKAGQLTAIMGPSGAGKSTLLNIL 275
L IS + G+ A++G SG+GKSTL+N++
Sbjct: 346 PALDSISLVIEPGETVALVGRSGSGKSTLVNLI 378
>gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE;
Provisional.
Length = 268
Score = 40.4 bits (95), Expect = 5e-04
Identities = 16/37 (43%), Positives = 25/37 (67%)
Query: 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
+ +L+ +S K+G+ A++G SG GKSTL +L GL
Sbjct: 25 QTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGL 61
>gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of
peroxisomal transporter, subfamily D. Peroxisomal
ATP-binding cassette transporter (Pat) is involved in
the import of very long-chain fatty acids (VLCFA) into
the peroxisome. The peroxisomal membrane forms a
permeability barrier for a wide variety of metabolites
required for and formed during fatty acid
beta-oxidation. To communicate with the cytoplasm and
mitochondria, peroxisomes need dedicated proteins to
transport such hydrophilic molecules across their
membranes. X-linked adrenoleukodystrophy (X-ALD) is
caused by mutations in the ALD gene, which encodes ALDP
(adrenoleukodystrophy protein ), a peroxisomal integral
membrane protein that is a member of the ATP-binding
cassette (ABC) transporter protein family. The disease
is characterized by a striking and unpredictable
variation in phenotypic expression. Phenotypes include
the rapidly progressive childhood cerebral form (CCALD),
the milder adult form, adrenomyeloneuropathy (AMN), and
variants without neurologic involvement (i.e.
asymptomatic).
Length = 166
Score = 39.4 bits (93), Expect = 5e-04
Identities = 16/28 (57%), Positives = 17/28 (60%)
Query: 251 EFKAGQLTAIMGPSGAGKSTLLNILAGL 278
E K G I GPSG GKS+L LAGL
Sbjct: 23 EIKPGDRLLITGPSGTGKSSLFRALAGL 50
>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D.
This model describes the ATP binding subunits of nitrate
transport in bacteria and archaea. This protein belongs
to the ATP-binding cassette (ABC) superfamily. It is
thought that the two subunits encoded by ntrC and ntrD
form the binding surface for interaction with ATP. This
model is restricted in identifying ATP binding subunit
associated with the nitrate transport. Nitrate
assimilation is aided by other proteins derived from the
operon which among others include products of ntrA - a
regulatory protein; ntrB - a hydropbobic transmembrane
permease and narB - a reductase [Transport and binding
proteins, Anions, Transport and binding proteins,
Other].
Length = 230
Score = 40.1 bits (94), Expect = 5e-04
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 245 LHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
L G++ + G+ +++G SG GKSTLLN+++GL
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGL 34
>gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE.
This family represents the NikE subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 265
Score = 40.2 bits (94), Expect = 6e-04
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
+L +S + G+ ++G SG GKSTL +L GL
Sbjct: 24 APVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGL 60
>gnl|CDD|234734 PRK00349, uvrA, excinuclease ABC subunit A; Reviewed.
Length = 943
Score = 40.8 bits (97), Expect = 6e-04
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 245 LHGISGEFKAGQLTAIMGPSGAGKSTLLN 273
L + E G+ T + G SG+GKSTL+N
Sbjct: 625 LKNVDVEIPLGKFTCVTGVSGSGKSTLIN 653
>gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 569
Score = 40.5 bits (95), Expect = 7e-04
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 232 AYHNPADFLNKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNIL 275
+ P + L ++ K GQ+ I GP+G+GKSTLL+++
Sbjct: 320 QFTYPQT--DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLI 361
Score = 28.1 bits (63), Expect = 5.9
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 107 SLLANLAK--QGRTVVATIHTPSALLFEKFDSLYALAKGHCIYRGSISRLV 155
+L NL + +GRTV+ + H SAL + + + GH RG+ +L
Sbjct: 489 QILHNLRQWGEGRTVIISAHRLSAL--TEASEILVMQHGHIAQRGNHDQLA 537
>gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 40.1 bits (94), Expect = 8e-04
Identities = 18/36 (50%), Positives = 24/36 (66%)
Query: 243 EILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
+ L G+S G TA++GP+GAGKSTLL L G+
Sbjct: 19 KALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGI 54
>gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system,
permease and ATPase components [General function
prediction only].
Length = 604
Score = 40.4 bits (95), Expect = 8e-04
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 251 EFKAGQLTAIMGPSGAGKSTLLNILAGL 278
E + G+ I G SGAGK++LL LAGL
Sbjct: 415 EVRPGERLLITGESGAGKTSLLRALAGL 442
>gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 39.7 bits (93), Expect = 8e-04
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNIL 275
K+ L + + +TA +GPSG GKST L L
Sbjct: 32 KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCL 65
>gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit;
Provisional.
Length = 242
Score = 39.6 bits (93), Expect = 8e-04
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 243 EILHGISGEFKAGQLTAIMGPSGAGKSTLLNIL 275
+ L I+ + G+ ++GPSGAGKS+LL +L
Sbjct: 16 QALFDITLDCPQGETLVLLGPSGAGKSSLLRVL 48
>gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 39.7 bits (92), Expect = 8e-04
Identities = 18/33 (54%), Positives = 24/33 (72%)
Query: 243 EILHGISGEFKAGQLTAIMGPSGAGKSTLLNIL 275
++L I+ +F Q+TAI+GPSG GKSTLL L
Sbjct: 18 QVLKNINMDFPERQITAIIGPSGCGKSTLLRAL 50
>gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK;
Provisional.
Length = 258
Score = 39.5 bits (93), Expect = 9e-04
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 245 LHGISGEFKAGQLTAIMGPSGAGKSTLLNILAG 277
+S + G++ I+G SG+GK+TLLN L+
Sbjct: 22 CRDVSFDLYPGEVLGIVGESGSGKTTLLNALSA 54
>gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding
protein UrtD. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity [Transport and binding proteins,
Amino acids, peptides and amines].
Length = 242
Score = 39.5 bits (93), Expect = 9e-04
Identities = 12/27 (44%), Positives = 21/27 (77%)
Query: 253 KAGQLTAIMGPSGAGKSTLLNILAGLT 279
G+L I+GP+GAGK+T+++++ G T
Sbjct: 26 DPGELRVIIGPNGAGKTTMMDVITGKT 52
>gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 39.6 bits (92), Expect = 0.001
Identities = 19/40 (47%), Positives = 26/40 (65%)
Query: 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYL 281
++IL G+S E ++TAI+GPSG GKST L L + L
Sbjct: 20 QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNEL 59
>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein.
This protein is related to a Proteobacterial ATP
transporter that exports lipid A and to eukaryotic
P-glycoproteins.
Length = 576
Score = 40.1 bits (94), Expect = 0.001
Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 233 YHNPADFLNKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNIL 275
+ PA ++ L G++ + G+ A++GPSGAGKSTL +L
Sbjct: 345 FAYPAR-PDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLL 386
>gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system,
ATPase component [Amino acid transport and metabolism].
Length = 386
Score = 39.7 bits (93), Expect = 0.001
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 245 LHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
++ S + + G++ IMG SG+GKSTL+ +L L
Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRL 77
>gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional.
Length = 1560
Score = 39.8 bits (93), Expect = 0.001
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAG 277
K +L +S G+LT ++G +G+GKSTLL L
Sbjct: 673 KVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLS 708
Score = 29.0 bits (65), Expect = 4.0
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 244 ILHGISGEFKAGQLTAIMGPSGAGKSTLL 272
+L G+S + I+G +G+GKSTLL
Sbjct: 1325 VLRGVSFRIAPREKVGIVGRTGSGKSTLL 1353
>gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 283
Score = 39.1 bits (91), Expect = 0.001
Identities = 18/36 (50%), Positives = 24/36 (66%)
Query: 243 EILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
L GI+ K G++TAI+G +GAGKSTL L G+
Sbjct: 20 HALKGININIKKGEVTAILGGNGAGKSTLFQNLNGI 55
>gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 300
Score = 39.3 bits (92), Expect = 0.001
Identities = 15/40 (37%), Positives = 26/40 (65%)
Query: 239 FLNKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
F +K+ + IS E G++ ++GP+GAGK+T ++ GL
Sbjct: 12 FGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGL 51
>gnl|CDD|221983 pfam13207, AAA_17, AAA domain.
Length = 114
Score = 37.3 bits (86), Expect = 0.001
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
Query: 259 AIMGPSGAGKSTLLNILA---GLTYLNFS 284
I GP G+GKSTL LA G+ ++
Sbjct: 3 LITGPPGSGKSTLAKKLAEKLGIPVISLD 31
>gnl|CDD|234579 PRK00023, cmk, cytidylate kinase; Provisional.
Length = 225
Score = 38.6 bits (91), Expect = 0.002
Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 3/27 (11%)
Query: 259 AIMGPSGAGKSTLLNILA---GLTYLN 282
AI GP+G+GK T+ ILA G YL+
Sbjct: 8 AIDGPAGSGKGTVAKILAKKLGFHYLD 34
>gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of
multidrug resistance-associated protein. The ABC
subfamily C is also known as MRP (multidrug
resistance-associated protein). Some of the MRP members
have five additional transmembrane segments in their
N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resistance lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate.
Length = 221
Score = 38.6 bits (91), Expect = 0.002
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 244 ILHGISGEFKAGQLTAIMGPSGAGKSTLLNIL 275
+L IS K G+ I+G +G+GKS+LL L
Sbjct: 19 VLKNISFSIKPGEKVGIVGRTGSGKSSLLLAL 50
>gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase
L inhibitor. The ABC ATPase RNase L inhibitor (RLI) is
a key enzyme in ribosomal biogenesis, formation of
translation preinitiation complexes, and assembly of HIV
capsids. RLI's are not transport proteins, and thus
cluster with a group of soluble proteins that lack the
transmembrane components commonly found in other members
of the family. Structurally, RLI's have an N-terminal
Fe-S domain and two nucleotide-binding domains, which
are arranged to form two composite active sites in their
interface cleft. RLI is one of the most conserved
enzymes between archaea and eukaryotes with a sequence
identity more than 48%. The high degree of evolutionary
conservation suggests that RLI performs a central role
in archaeal and eukaryotic physiology.
Length = 177
Score = 38.3 bits (89), Expect = 0.002
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 250 GEFKAGQLTAIMGPSGAGKSTLLNILAG 277
G K G++ I+GP+G GK+T + ILAG
Sbjct: 20 GVVKEGEVIGIVGPNGTGKTTAVKILAG 47
>gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter,
ATP-binding protein. Members of this family are the
ATP-binding protein of a conserved four gene ABC
transporter operon found next to ectoine unilization
operons and ectoine biosynthesis operons. Ectoine is a
compatible solute that protects enzymes from high
osmolarity. It is released by some species in response
to hypoosmotic shock, and it is taken up by a number of
bacteria as a compatible solute or for consumption. This
family shows strong sequence similiarity to a number of
amino acid ABC transporter ATP-binding proteins.
Length = 252
Score = 38.7 bits (90), Expect = 0.002
Identities = 18/40 (45%), Positives = 26/40 (65%)
Query: 239 FLNKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
F +L G++ AG+ A++GPSG+GKST+L IL L
Sbjct: 10 FGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTL 49
>gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit;
Provisional.
Length = 343
Score = 39.0 bits (92), Expect = 0.002
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 245 LHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
L+ +S AG++ ++G SGAGKSTL+ + L
Sbjct: 21 LNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLL 54
>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein.
Several bacterial species have enzymes xylose isomerase
and xylulokinase enzymes for xylose utilization. Members
of this protein family are the ATP-binding cassette
(ABC) subunit of the known or predicted high-affinity
xylose ABC transporter for xylose import. These genes,
which closely resemble other sugar transport ABC
transporter genes, typically are encoded near xylose
utilization enzymes and regulatory proteins. Note that
this form of the transporter contains two copies of the
ABC transporter domain (pfam00005) [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 500
Score = 39.0 bits (91), Expect = 0.002
Identities = 17/41 (41%), Positives = 25/41 (60%)
Query: 238 DFLNKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
F + L GI E + G+ + G +GAGKSTL+ IL+G+
Sbjct: 10 TFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGV 50
>gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 275
Score = 38.9 bits (91), Expect = 0.002
Identities = 15/29 (51%), Positives = 23/29 (79%)
Query: 243 EILHGISGEFKAGQLTAIMGPSGAGKSTL 271
E L GI+ + + G++ A++GP+GAGKSTL
Sbjct: 16 EALKGINFKAEKGEMVALLGPNGAGKSTL 44
Score = 28.1 bits (63), Expect = 4.6
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 96 GLDSSSCSQCVSLLANLAKQGRTVVATIH 124
GLD SQ + LL +L K+G T++ + H
Sbjct: 167 GLDPMGASQIMKLLYDLNKEGITIIISTH 195
>gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC
transporter ATP-binding subunit GldA. Members of this
protein family are exclusive to the Bacteroidetes phylum
(previously Cytophaga-Flavobacteria-Bacteroides). GldA
is an ABC transporter ATP-binding protein (pfam00005)
linked to a type of rapid surface gliding motility found
in certain Bacteroidetes, such as Flavobacterium
johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA
abolish the gliding phenotype. Gliding motility appears
closely linked to chitin utilization in the model
species Flavobacterium johnsoniae. Bacteroidetes with
members of this protein family appear to have all of the
genes associated with gliding motility.
Length = 301
Score = 39.0 bits (91), Expect = 0.002
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 245 LHGISGEFKAGQLTAIMGPSGAGKSTLLNILAG 277
L +S E + G++ +GP+GAGKST + I+ G
Sbjct: 18 LDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITG 50
>gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 38.7 bits (90), Expect = 0.002
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLL 272
K L+ I+ ++TA++GPSG GKSTLL
Sbjct: 19 KHALYDITISIPKNRVTALIGPSGCGKSTLL 49
>gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection
ABC transporter, ATP-binding subunit. Model TIGR03731
represents the family of all lantibiotics related to
gallidermin, including epidermin, mutatin, and nisin.
This protein family describes the ATP-binding subunit of
a gallidermin/epidermin class lantibiotic protection
transporter. It is largely restricted to
gallidermin-family lantibiotic biosynthesis and export
cassettes, but also occurs in orphan transporter
cassettes in species that lack candidate lantibiotic
precursor and synthetase genes.
Length = 223
Score = 38.1 bits (89), Expect = 0.002
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 239 FLNKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
F + ++ IS + ++GP+GAGKSTLL ++ G+
Sbjct: 10 FGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGI 49
>gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette
domain 1 of RNase L inhibitor. The ABC ATPase, RNase L
inhibitor (RLI), is a key enzyme in ribosomal
biogenesis, formation of translation preinitiation
complexes, and assembly of HIV capsids. RLI s are not
transport proteins and thus cluster with a group of
soluble proteins that lack the transmembrane components
commonly found in other members of the family.
Structurally, RLIs have an N-terminal Fe-S domain and
two nucleotide binding domains which are arranged to
form two composite active sites in their interface
cleft. RLI is one of the most conserved enzymes between
archaea and eukaryotes with a sequence identity more
than 48%. The high degree of evolutionary conservation
suggests that RLI performs a central role in archaeal
and eukaryotic physiology.
Length = 255
Score = 38.5 bits (90), Expect = 0.002
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 253 KAGQLTAIMGPSGAGKSTLLNILAGLTYLNFSK 285
+ GQ+ ++GP+G GKST L ILAG N K
Sbjct: 24 REGQVLGLVGPNGIGKSTALKILAGKLKPNLGK 56
>gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit. This family is a
member of the ABC transporter superfamily of proteins of
which all members for which functions are known except
the UvrA proteins are involved in the transport of
material through membranes. UvrA orthologs are involved
in the recognition of DNA damage as a step in nucleotide
excision repair. This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 925
Score = 39.2 bits (92), Expect = 0.002
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 241 NKEILHGISGEFKAGQLTAIMGPSGAGKSTLLN 273
+ L I+ G T I G SG+GKSTL+N
Sbjct: 620 RENNLKNITVSIPLGLFTCITGVSGSGKSTLIN 652
Score = 28.4 bits (64), Expect = 5.9
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 245 LHGISGEFKAGQLTAIMGPSGAGKSTL 271
L I E +L I G SG+GKS+L
Sbjct: 12 LKNIDVEIPRDKLVVITGLSGSGKSSL 38
>gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 213
Score = 37.9 bits (88), Expect = 0.002
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 244 ILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLNFS 284
+L ++ G++ +MGPSG GKSTLL+ + G FS
Sbjct: 17 LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFS 57
>gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system,
ATP-binding component PhnT. This ATP-binding component
of an ABC transport system is found in Salmonella and
Burkholderia lineages in the vicinity of enzymes for the
breakdown of 2-aminoethylphosphonate.
Length = 362
Score = 38.8 bits (90), Expect = 0.002
Identities = 17/35 (48%), Positives = 25/35 (71%)
Query: 244 ILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
+L +S E +AG+L A++G SG GK+TLL +AG
Sbjct: 20 VLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGF 54
>gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional.
Length = 306
Score = 38.2 bits (89), Expect = 0.003
Identities = 16/39 (41%), Positives = 27/39 (69%)
Query: 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTY 280
K ++ G+S + G+ ++GP+GAGK+T L +L GLT+
Sbjct: 20 KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTH 58
>gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 316
Score = 38.3 bits (90), Expect = 0.003
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 244 ILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLT 279
+ G+S E K G++ I+G SG+GKS L + GL
Sbjct: 20 AVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLL 55
>gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase
component [Amino acid transport and metabolism].
Length = 256
Score = 38.2 bits (89), Expect = 0.003
Identities = 15/30 (50%), Positives = 22/30 (73%)
Query: 243 EILHGISGEFKAGQLTAIMGPSGAGKSTLL 272
E+L G+S + AG + +I+G SG+GKST L
Sbjct: 20 EVLKGVSLQANAGDVISIIGSSGSGKSTFL 49
>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter
ATP-binding subunit. This model describes daunorubicin
resistance ABC transporter, ATP binding subunit in
bacteria and archaea. This model is restricted in its
scope to preferentially recognize the ATP binding
subunit associated with effux of the drug, daunorubicin.
This transport system belong to the larger ATP-Binding
Cassette (ABC) transporter superfamily. The
characteristic feature of these transporter is the
obligatory coupling of ATP hydrolysis to substrate
translocation. The minimal configuration of bacterial
ABC transport system: an ATPase or ATP binding subunit;
An integral membrane protein; a hydrophilic polypetpide,
which likely functions as substrate binding protein. In
eukaryotes proteins of similar function include p-gyco
proteins, multidrug resistance protein etc [Transport
and binding proteins, Other].
Length = 302
Score = 38.1 bits (89), Expect = 0.003
Identities = 11/35 (31%), Positives = 23/35 (65%)
Query: 245 LHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLT 279
+ G++ + + G++ +GP+GAGK+T + +L L
Sbjct: 9 VDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLL 43
>gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase
component [General function prediction only].
Length = 249
Score = 38.1 bits (89), Expect = 0.003
Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 15/55 (27%)
Query: 240 LNKEILH--GIS---GEFKA----------GQLTAIMGPSGAGKSTLLNILAGLT 279
+N IL+ G+S G FKA G+L ++GP+GAGK+TL++++ G T
Sbjct: 1 MNPIILYLDGVSVSFGGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKT 55
>gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC
transporter, HlyB family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion [Protein fate, Protein and
peptide secretion and trafficking].
Length = 694
Score = 38.6 bits (90), Expect = 0.003
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 243 EILHGISGEFKAGQLTAIMGPSGAGKSTLLNIL 275
E+L ++ + K G+ I+GPSG+GKSTL +L
Sbjct: 471 EVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLL 503
>gnl|CDD|223360 COG0283, Cmk, Cytidylate kinase [Nucleotide transport and
metabolism].
Length = 222
Score = 37.6 bits (88), Expect = 0.004
Identities = 15/27 (55%), Positives = 19/27 (70%), Gaps = 3/27 (11%)
Query: 259 AIMGPSGAGKSTLLNILA---GLTYLN 282
AI GP+G+GKST+ ILA G YL+
Sbjct: 8 AIDGPAGSGKSTVAKILAEKLGFHYLD 34
>gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the
excision repair protein UvrA. Nucleotide excision
repair in eubacteria is a process that repairs DNA
damage by the removal of a 12-13-mer oligonucleotide
containing the lesion. Recognition and cleavage of the
damaged DNA is a multistep ATP-dependent reaction that
requires the UvrA, UvrB, and UvrC proteins. Both UvrA
and UvrB are ATPases, with UvrA having two ATP binding
sites, which have the characteristic signature of the
family of ABC proteins and UvrB having one ATP binding
site that is structurally related to that of helicases.
Length = 261
Score = 37.6 bits (88), Expect = 0.004
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 245 LHGISGEFKAGQLTAIMGPSGAGKSTLLN 273
L I + G LT + G SG+GKS+L+N
Sbjct: 11 LKNIDVDIPLGVLTCVTGVSGSGKSSLIN 39
>gnl|CDD|223272 COG0194, Gmk, Guanylate kinase [Nucleotide transport and
metabolism].
Length = 191
Score = 37.1 bits (87), Expect = 0.005
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 255 GQLTAIMGPSGAGKSTLLNIL 275
G L + GPSG GKSTL+ L
Sbjct: 4 GLLIVLSGPSGVGKSTLVKAL 24
>gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 37.1 bits (86), Expect = 0.005
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 241 NKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282
+ ++ G+ + + A+MGPSG GKSTLL L LN
Sbjct: 16 SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELN 57
>gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the
molybdate transporter. Archaeal protein closely related
to ModC. ModC is an ABC-type transporter and the ATPase
component of a molybdate transport system that also
includes the periplasmic binding protein ModA and the
membrane protein ModB. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 235
Score = 37.3 bits (87), Expect = 0.005
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 245 LHGISGEFKAGQLTAIMGPSGAGKSTLLNILAG 277
L +S E + G I+GP+G+GKS LL +AG
Sbjct: 15 LKNVSLEVERGDYFVILGPTGSGKSVLLETIAG 47
>gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter
subunit; Provisional.
Length = 257
Score = 37.3 bits (86), Expect = 0.005
Identities = 15/30 (50%), Positives = 22/30 (73%)
Query: 243 EILHGISGEFKAGQLTAIMGPSGAGKSTLL 272
E+L G+S + AG + +I+G SG+GKST L
Sbjct: 19 EVLKGVSLQANAGDVISIIGSSGSGKSTFL 48
>gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 325
Score = 37.4 bits (87), Expect = 0.005
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 248 ISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
IS E G++ +G +GAGKST L +L GL
Sbjct: 43 ISFEIPKGEIVGFLGANGAGKSTTLKMLTGL 73
>gnl|CDD|206743 cd11383, YfjP, YfjP GTPase. The Era (E. coli Ras-like
protein)-like YfjP subfamily includes several
uncharacterized bacterial GTPases that are similar to
Era. They generally show sequence conservation in the
region between the Walker A and B motifs (G1 and G3 box
motifs), to the exclusion of other GTPases. Era is
characterized by a distinct derivative of the KH domain
(the pseudo-KH domain) which is located C-terminal to
the GTPase domain.
Length = 140
Score = 36.2 bits (84), Expect = 0.005
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 259 AIMGPSGAGKSTLLNILAGLT 279
+MG +GAGKS+L N L G
Sbjct: 1 GLMGKTGAGKSSLCNALFGTE 21
>gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit;
Provisional.
Length = 549
Score = 37.9 bits (88), Expect = 0.005
Identities = 18/38 (47%), Positives = 27/38 (71%)
Query: 245 LHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLN 282
L+ IS E G++ I+G +G+GKSTL N++AG+T N
Sbjct: 40 LNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPN 77
>gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication,
recombination, and repair].
Length = 935
Score = 37.9 bits (89), Expect = 0.006
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 245 LHGISGEFKAGQLTAIMGPSGAGKSTLLN 273
L I E G T + G SG+GKSTL+N
Sbjct: 617 LKNIDVEIPLGVFTCVTGVSGSGKSTLIN 645
Score = 28.7 bits (65), Expect = 4.5
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 245 LHGISGEFKAGQLTAIMGPSGAGKSTL 271
L I E +L I G SG+GKS+L
Sbjct: 16 LKNIDLEIPRNKLVVITGLSGSGKSSL 42
>gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 269
Score = 37.1 bits (86), Expect = 0.006
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 251 EFKAGQLTAIMGPSGAGKSTLLNIL 275
+ G++TA++GPSG GKST+L L
Sbjct: 35 DIPRGKVTALIGPSGCGKSTVLRSL 59
>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit;
Provisional.
Length = 506
Score = 37.6 bits (88), Expect = 0.006
Identities = 14/34 (41%), Positives = 26/34 (76%)
Query: 245 LHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
L +S + +AG++ ++ G +GAGKSTL+ +L+G+
Sbjct: 21 LDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGV 54
>gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding
protein; Provisional.
Length = 369
Score = 37.3 bits (87), Expect = 0.006
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 251 EFKAGQLTAIMGPSGAGKSTLLNILAGL 278
+ G+ +GPSG GKSTLL ++AGL
Sbjct: 25 DIHEGEFVVFVGPSGCGKSTLLRMIAGL 52
>gnl|CDD|238978 cd02020, CMPK, Cytidine monophosphate kinase (CMPK) catalyzes the
reversible phosphorylation of cytidine monophosphate
(CMP) to produce cytidine diphosphate (CDP), using ATP
as the preferred phosphoryl donor.
Length = 147
Score = 36.3 bits (85), Expect = 0.006
Identities = 15/27 (55%), Positives = 20/27 (74%), Gaps = 3/27 (11%)
Query: 259 AIMGPSGAGKSTLLNILA---GLTYLN 282
AI GP+G+GKST+ +LA GL YL+
Sbjct: 3 AIDGPAGSGKSTVAKLLAKKLGLPYLD 29
>gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 257
Score = 36.9 bits (85), Expect = 0.006
Identities = 20/45 (44%), Positives = 27/45 (60%)
Query: 241 NKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLNFSK 285
+K IL I+ + + IMGPSG+GKSTLL +L L + SK
Sbjct: 22 DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSK 66
>gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding
protein; Provisional.
Length = 265
Score = 37.3 bits (86), Expect = 0.006
Identities = 16/38 (42%), Positives = 22/38 (57%)
Query: 241 NKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
+ ++ E G TAI+GP+G GKSTLL L+ L
Sbjct: 19 KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRL 56
>gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component
[Amino acid transport and metabolism].
Length = 242
Score = 37.1 bits (86), Expect = 0.006
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 243 EILHGISGEFKAGQLTAIMGPSGAGKSTLLNIL 275
+ L I+ + G+ ++GPSGAGKS+LL +L
Sbjct: 16 QALFDITLDCPEGETLVLLGPSGAGKSSLLRVL 48
>gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding
subunit; Provisional.
Length = 265
Score = 37.1 bits (86), Expect = 0.007
Identities = 16/32 (50%), Positives = 25/32 (78%)
Query: 244 ILHGISGEFKAGQLTAIMGPSGAGKSTLLNIL 275
+LH +S F AG++T ++G +G+GKSTLL +L
Sbjct: 26 LLHPLSLTFPAGKVTGLIGHNGSGKSTLLKML 57
>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit;
Provisional.
Length = 305
Score = 37.0 bits (86), Expect = 0.007
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 245 LHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
L +S E G+ AI+G +G+GK+T + L L
Sbjct: 23 LDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNAL 56
>gnl|CDD|222160 pfam13476, AAA_23, AAA domain.
Length = 204
Score = 36.8 bits (85), Expect = 0.007
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 7/48 (14%)
Query: 239 FLNKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLNFSKC 286
F + EI +F G LT I GP+G+GK+T+L+ + Y S+
Sbjct: 10 FKDLEI------DFSKG-LTLIYGPNGSGKTTILDAIRWALYGKTSRL 50
>gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 305
Score = 37.1 bits (86), Expect = 0.007
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 245 LHGISGEFKAGQLTAIMGPSGAGKSTLLNIL 275
L G+S + +TA++GPSG GKST L L
Sbjct: 61 LKGVSMDIPEKSVTALIGPSGCGKSTFLRCL 91
>gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 237
Score = 36.8 bits (85), Expect = 0.007
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 243 EILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAG 277
+ LH +S G++ ++G +GAGK+TLL L G
Sbjct: 19 QALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCG 53
>gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 258
Score = 36.7 bits (85), Expect = 0.008
Identities = 12/30 (40%), Positives = 21/30 (70%)
Query: 248 ISGEFKAGQLTAIMGPSGAGKSTLLNILAG 277
+S + G++ I+G SG+GK+TLL ++G
Sbjct: 25 VSFDLYPGEVLGIVGESGSGKTTLLKCISG 54
>gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 36.9 bits (86), Expect = 0.008
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
L +S E G+ AI+G +G+GKST+ IL GL
Sbjct: 22 NNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGL 58
>gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC
transporter, peptidase/ATP-binding protein. This
protein describes a multidomain ABC transporter subunit
that is one of three protein families associated with
some regularity with a distinctive family of putative
bacteriocins. It includes a bacteriocin-processing
peptidase domain at the N-terminus. Model TIGR03793
describes a conserved propeptide region for this
bacteriocin family, unusual because it shows obvious
homology a region of the enzyme nitrile hydratase up to
the classic Gly-Gly cleavage motif. This family is
therefore predicted to be a subunit of a bacteriocin
processing and export system characteristic to this
system that we designate NHLM, Nitrile Hydratase Leader
Microcin [Transport and binding proteins, Amino acids,
peptides and amines, Cellular processes, Biosynthesis of
natural products].
Length = 710
Score = 37.2 bits (87), Expect = 0.008
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 240 LNKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
L ++ S + GQ A++G SG+GKST+ ++AGL
Sbjct: 490 LEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGL 528
>gnl|CDD|233193 TIGR00929, VirB4_CagE, type IV secretion/conjugal transfer ATPase,
VirB4 family. Type IV secretion systems are found in
Gram-negative pathogens. They export proteins, DNA, or
complexes in different systems and are related to
plasmid conjugation systems. This model represents
related ATPases that include VirB4 in Agrobacterium
tumefaciens (DNA export) CagE in Helicobacter pylori
(protein export) and plasmid TraB (conjugation).
Length = 785
Score = 37.3 bits (87), Expect = 0.008
Identities = 12/19 (63%), Positives = 15/19 (78%)
Query: 258 TAIMGPSGAGKSTLLNILA 276
T I GP+G+GK+TLLN L
Sbjct: 437 TLIFGPTGSGKTTLLNFLL 455
>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit;
Provisional.
Length = 377
Score = 37.1 bits (86), Expect = 0.008
Identities = 14/23 (60%), Positives = 19/23 (82%)
Query: 255 GQLTAIMGPSGAGKSTLLNILAG 277
G++ A++G SG GKSTLL +LAG
Sbjct: 45 GEIFALLGASGCGKSTLLRMLAG 67
>gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 329
Score = 37.0 bits (85), Expect = 0.008
Identities = 18/40 (45%), Positives = 25/40 (62%)
Query: 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYL 281
K +LH ++ + K ++TA +GPSG GKST L L L L
Sbjct: 95 KHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDL 134
>gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 285
Score = 36.7 bits (85), Expect = 0.009
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 245 LHGISGEFKAGQLTAIMGPSGAGKSTLL 272
L +S + Q+TA++GPSG GKST L
Sbjct: 55 LDDVSMDIPENQVTAMIGPSGCGKSTFL 82
>gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 249
Score = 36.4 bits (84), Expect = 0.010
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 245 LHGISGEFKAGQLTAIMGPSGAGKSTLLNIL 275
L I+ A Q+TA++GPSG GKSTLL L
Sbjct: 19 LKSINLPIPARQVTALIGPSGCGKSTLLRCL 49
>gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 286
Score = 36.7 bits (85), Expect = 0.010
Identities = 14/37 (37%), Positives = 25/37 (67%)
Query: 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
+ +H ++ EF+ G+ AI+G +G+GKSTL+ + L
Sbjct: 20 HQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINAL 56
>gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 290
Score = 36.5 bits (85), Expect = 0.010
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 245 LHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
L+ ++ +G AI+G +G+GKSTLL L GL
Sbjct: 23 LYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGL 56
>gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the
osmoprotectant proline/glycine betaine uptake system.
This family comprises the glycine betaine/L-proline ATP
binding subunit in bacteria and its equivalents in
archaea. This transport system belong to the larger
ATP-Binding Cassette (ABC) transporter superfamily. The
characteristic feature of these transporters is the
obligatory coupling of ATP hydrolysis to substrate
translocation. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 269
Score = 36.5 bits (85), Expect = 0.010
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 245 LHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
++ +S + + G++ IMG SG+GKSTLL + L
Sbjct: 40 VNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRL 73
>gnl|CDD|238026 cd00071, GMPK, Guanosine monophosphate kinase (GMPK, EC 2.7.4.8),
also known as guanylate kinase (GKase), catalyzes the
reversible phosphoryl transfer from adenosine
triphosphate (ATP) to guanosine monophosphate (GMP) to
yield adenosine diphosphate (ADP) and guanosine
diphosphate (GDP). It plays an essential role in the
biosynthesis of guanosine triphosphate (GTP). This
enzyme is also important for the activation of some
antiviral and anticancer agents, such as acyclovir,
ganciclovir, carbovir, and thiopurines.
Length = 137
Score = 35.2 bits (82), Expect = 0.010
Identities = 11/16 (68%), Positives = 12/16 (75%)
Query: 260 IMGPSGAGKSTLLNIL 275
+ GPSG GKSTLL L
Sbjct: 4 LSGPSGVGKSTLLKRL 19
>gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 200
Score = 36.1 bits (83), Expect = 0.011
Identities = 18/41 (43%), Positives = 27/41 (65%)
Query: 238 DFLNKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
D+ ++ +L IS AG L + G +GAGK+TLL ++AGL
Sbjct: 10 DYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGL 50
>gnl|CDD|238977 cd02019, NK, Nucleoside/nucleotide kinase (NK) is a protein
superfamily consisting of multiple families of enzymes
that share structural similarity and are functionally
related to the catalysis of the reversible phosphate
group transfer from nucleoside triphosphates to
nucleosides/nucleotides, nucleoside monophosphates, or
sugars. Members of this family play a wide variety of
essential roles in nucleotide metabolism, the
biosynthesis of coenzymes and aromatic compounds, as
well as the metabolism of sugar and sulfate.
Length = 69
Score = 33.8 bits (78), Expect = 0.011
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 259 AIMGPSGAGKSTLLNILA 276
AI G SG+GKST+ LA
Sbjct: 3 AITGGSGSGKSTVAKKLA 20
>gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase
component [Amino acid transport and metabolism].
Length = 268
Score = 36.4 bits (85), Expect = 0.012
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 244 ILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
+ G+S K G+ ++G SG GKSTL ++ GL
Sbjct: 28 AVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGL 62
>gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 36.2 bits (83), Expect = 0.012
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 245 LHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYL 281
+ GIS + ++TAI+GPSG GKST + L ++ L
Sbjct: 23 IEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISEL 59
>gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette
domain 2 of RNase L inhibitor. The ABC ATPase, RNase L
inhibitor (RLI), is a key enzyme in ribosomal
biogenesis, formation of translation preinitiation
complexes, and assembly of HIV capsids. RLI's are not
transport proteins and thus cluster with a group of
soluble proteins that lack the transmembrane components
commonly found in other members of the family.
Structurally, RLI's have an N-terminal Fe-S domain and
two nucleotide-binding domains which are arranged to
form two composite active sites in their interface
cleft. RLI is one of the most conserved enzymes between
archaea and eukaryotes with a sequence identity of more
than 48%. The high degree of evolutionary conservation
suggests that RLI performs a central role in archaeal
and eukaryotic physiology.
Length = 246
Score = 36.2 bits (84), Expect = 0.012
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 250 GEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
G ++ I+GP+G GK+T + +LAG+
Sbjct: 20 GSISESEVIGILGPNGIGKTTFIKMLAGV 48
>gnl|CDD|225982 COG3451, VirB4, Type IV secretory pathway, VirB4 components
[Intracellular trafficking and secretion].
Length = 796
Score = 36.6 bits (85), Expect = 0.013
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 258 TAIMGPSGAGKSTLLNILA 276
T I+GP+GAGK+ LL+ L
Sbjct: 439 TLIIGPTGAGKTVLLSFLL 457
>gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI;
Provisional.
Length = 340
Score = 36.3 bits (84), Expect = 0.013
Identities = 14/39 (35%), Positives = 28/39 (71%)
Query: 241 NKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLT 279
+K +++G+S +G+ ++GP+GAGKST+ ++ G+T
Sbjct: 53 DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMT 91
>gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK.
Members of this family are the PhnK protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated complex. This protein (PhnK) and the
adjacent-encoded PhnL resemble transporter ATP-binding
proteins but are suggested, based on mutatgenesis
studies, to be part of this complex rather than part of
a transporter per se [Central intermediary metabolism,
Phosphorus compounds].
Length = 253
Score = 36.0 bits (83), Expect = 0.013
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 248 ISGEFKAGQLTAIMGPSGAGKSTLLNILAG 277
+S + G++ I+G SG+GKSTLL LAG
Sbjct: 22 VSFDLYPGEVLGIVGESGSGKSTLLGCLAG 51
>gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 276
Score = 36.2 bits (83), Expect = 0.014
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 239 FLNKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNIL 275
F K +L +S F A +T++MGP+G+GK+T L L
Sbjct: 31 FAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTL 67
>gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit;
Provisional.
Length = 351
Score = 36.2 bits (84), Expect = 0.014
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 251 EFKAGQLTAIMGPSGAGKSTLLNILAGL 278
K G + ++GPSG GK+T+L ++AGL
Sbjct: 28 TIKQGTMVTLLGPSGCGKTTVLRLVAGL 55
>gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein;
Provisional.
Length = 501
Score = 36.5 bits (85), Expect = 0.014
Identities = 11/25 (44%), Positives = 20/25 (80%)
Query: 254 AGQLTAIMGPSGAGKSTLLNILAGL 278
G++ A++G +GAGKST++ +L G+
Sbjct: 29 PGRVMALVGENGAGKSTMMKVLTGI 53
>gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 255
Score = 35.7 bits (83), Expect = 0.015
Identities = 11/31 (35%), Positives = 22/31 (70%)
Query: 247 GISGEFKAGQLTAIMGPSGAGKSTLLNILAG 277
++ E + ++ +++GP+GAGK+T+ N L G
Sbjct: 23 NVNLEVREQEIVSLIGPNGAGKTTVFNCLTG 53
>gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 309
Score = 36.1 bits (84), Expect = 0.015
Identities = 12/40 (30%), Positives = 25/40 (62%)
Query: 239 FLNKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
+ NK+ + ++ + G+ ++GPSG+GK+T L ++ L
Sbjct: 11 YGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRL 50
Score = 30.0 bits (68), Expect = 1.5
Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 5/65 (7%)
Query: 15 SSGKILVNGQERKSACIEQFLKLSC-YIQQDDALRPKLTVTEAMMIASHLKLGFKVSTQE 73
+SG+IL++G++ L+ Y+ Q L P LTV E + L +
Sbjct: 54 TSGEILIDGEDISDL-DPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLL---GWDKER 109
Query: 74 KKDQV 78
K +
Sbjct: 110 IKKRA 114
>gnl|CDD|206727 cd04164, trmE, trmE is a tRNA modification GTPase. TrmE (MnmE,
ThdF, MSS1) is a 3-domain protein found in bacteria and
eukaryotes. It controls modification of the uridine at
the wobble position (U34) of tRNAs that read codons
ending with A or G in the mixed codon family boxes. TrmE
contains a GTPase domain that forms a canonical Ras-like
fold. It functions a molecular switch GTPase, and
apparently uses a conformational change associated with
GTP hydrolysis to promote the tRNA modification
reaction, in which the conserved cysteine in the
C-terminal domain is thought to function as a catalytic
residue. In bacteria that are able to survive in
extremely low pH conditions, TrmE regulates
glutamate-dependent acid resistance.
Length = 159
Score = 35.2 bits (82), Expect = 0.016
Identities = 11/20 (55%), Positives = 12/20 (60%)
Query: 258 TAIMGPSGAGKSTLLNILAG 277
I G GKS+LLN LAG
Sbjct: 6 VVIAGKPNVGKSSLLNALAG 25
>gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed.
Length = 402
Score = 36.0 bits (83), Expect = 0.018
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 244 ILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
+L G+ + G L ++GP+GAGK+TLL + G
Sbjct: 18 VLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGT 52
>gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding
subunit. This model describes spermidine/putrescine ABC
transporter, ATP binding subunit in bacteria and its
equivalents in archaea. This transport system belong to
the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Polyamines like spermidine and putrescine play
vital role in cell proliferation, differentiation, and
ion homeostasis. The concentration of polyamines within
the cell are regulated by biosynthesis, degradation and
transport (uptake and efflux included) [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 325
Score = 35.9 bits (83), Expect = 0.018
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 260 IMGPSGAGKSTLLNILAGLTYLNFSK 285
++GPSG GK+TLL +LAG +
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGS 26
>gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 35.8 bits (82), Expect = 0.018
Identities = 14/25 (56%), Positives = 19/25 (76%)
Query: 248 ISGEFKAGQLTAIMGPSGAGKSTLL 272
+S +F +TAI+GPSG GKST+L
Sbjct: 23 VSMDFPENSVTAIIGPSGCGKSTVL 47
>gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1,
subfamily C. Domain 2 of NFT1 (New full-length MRP-type
transporter 1). NFT1 belongs to the MRP (multidrug
resistance-associated protein) family of ABC
transporters. Some of the MRP members have five
additional transmembrane segments in their N-terminus,
but the function of these additional membrane-spanning
domains is not clear. The MRP was found in the
multidrug-resisting lung cancer cell in which
p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions such as
glutathione, glucuronate, and sulfate.
Length = 207
Score = 35.1 bits (81), Expect = 0.020
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 243 EILHGISGEFKAGQLTAIMGPSGAGKSTL 271
+L +S + KAG+ I+G +GAGKSTL
Sbjct: 22 PVLKNVSFKVKAGEKIGIVGRTGAGKSTL 50
>gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 35.5 bits (82), Expect = 0.020
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 245 LHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
L ++ + G TA +G +G+GKST++ +L GL
Sbjct: 23 LFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGL 56
>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter,
ATP-binding subunit. This protein family is the
ATP-binding cassette subunit of binding
protein-dependent ABC transporter complex that strictly
co-occurs with TIGR03769. TIGRFAMs model TIGR03769
describes a protein domain that occurs singly or as one
of up to three repeats in proteins of a number of
Actinobacteria, including Propionibacterium acnes
KPA171202. The TIGR03769 domain occurs both in an
adjacent gene for the substrate-binding protein and in
additional (often nearby) proteins, often with
LPXTG-like sortase recognition signals. Homologous
ATP-binding subunits outside the scope of this family
include manganese transporter MntA in Synechocystis sp.
PCC 6803 and chelated iron transporter subunits. The
function of this transporter complex is unknown
[Transport and binding proteins, Unknown substrate].
Length = 223
Score = 35.2 bits (81), Expect = 0.021
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 254 AGQLTAIMGPSGAGKSTLLNILAGLT 279
G+L ++GP+GAGK+TLL + GL
Sbjct: 5 KGELLGLLGPNGAGKTTLLRAILGLI 30
>gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 35.3 bits (81), Expect = 0.023
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 241 NKEILHGISGEFKAGQLTAIMGPSGAGKSTLL 272
K+ + ++ + Q+TAI+GPSG GK+TLL
Sbjct: 15 EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLL 46
>gnl|CDD|222036 pfam13304, AAA_21, AAA domain.
Length = 256
Score = 35.1 bits (80), Expect = 0.025
Identities = 13/22 (59%), Positives = 16/22 (72%)
Query: 257 LTAIMGPSGAGKSTLLNILAGL 278
L I+GP+G+GKS LL LA L
Sbjct: 1 LNVIIGPNGSGKSNLLKALALL 22
>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of
small guanosine triphosphatases (GTPases). Ras-like
GTPase superfamily. The Ras-like superfamily of small
GTPases consists of several families with an extremely
high degree of structural and functional similarity. The
Ras superfamily is divided into at least four families
in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families.
This superfamily also includes proteins like the GTP
translation factors, Era-like GTPases, and G-alpha chain
of the heterotrimeric G proteins. Members of the Ras
superfamily regulate a wide variety of cellular
functions: the Ras family regulates gene expression, the
Rho family regulates cytoskeletal reorganization and
gene expression, the Rab and Sar1/Arf families regulate
vesicle trafficking, and the Ran family regulates
nucleocytoplasmic transport and microtubule
organization. The GTP translation factor family
regulates initiation, elongation, termination, and
release in translation, and the Era-like GTPase family
regulates cell division, sporulation, and DNA
replication. Members of the Ras superfamily are
identified by the GTP binding site, which is made up of
five characteristic sequence motifs, and the switch I
and switch II regions.
Length = 161
Score = 34.4 bits (79), Expect = 0.026
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 259 AIMGPSGAGKSTLLNILAGLTYL 281
++G G GKS+LLN L G
Sbjct: 1 VVVGRGGVGKSSLLNALLGGEVG 23
>gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein.
[Transport and binding proteins, Other].
Length = 711
Score = 35.5 bits (82), Expect = 0.027
Identities = 13/35 (37%), Positives = 24/35 (68%)
Query: 241 NKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNIL 275
+ +L G++ G++ A++GPSG+GKST+ +L
Sbjct: 493 DVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALL 527
>gnl|CDD|226232 COG3709, COG3709, Uncharacterized component of phosphonate
metabolism [Inorganic ion transport and metabolism].
Length = 192
Score = 34.7 bits (80), Expect = 0.028
Identities = 13/22 (59%), Positives = 17/22 (77%)
Query: 255 GQLTAIMGPSGAGKSTLLNILA 276
G+L A++GPSGAGK TLL+
Sbjct: 5 GRLIAVVGPSGAGKDTLLDAAR 26
>gnl|CDD|234719 PRK00300, gmk, guanylate kinase; Provisional.
Length = 205
Score = 34.7 bits (81), Expect = 0.031
Identities = 13/21 (61%), Positives = 15/21 (71%)
Query: 255 GQLTAIMGPSGAGKSTLLNIL 275
G L + GPSGAGKSTL+ L
Sbjct: 5 GLLIVLSGPSGAGKSTLVKAL 25
>gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional.
Length = 1622
Score = 35.5 bits (82), Expect = 0.031
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 244 ILHGISGEFKAGQLTAIMGPSGAGKSTLLNIL 275
+LHG+S E + I+G +GAGKS++LN L
Sbjct: 1254 VLHGLSFEISPSEKVGIVGRTGAGKSSMLNAL 1285
>gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 268
Score = 34.9 bits (80), Expect = 0.031
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 241 NKEILHGISGEFKAGQLTAIMGPSGAGKSTLL 272
K ++ IS + + +TA++GPSG GKST L
Sbjct: 33 EKRAVNDISMDIEKHAVTALIGPSGCGKSTFL 64
>gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional.
Length = 222
Score = 34.9 bits (80), Expect = 0.032
Identities = 14/37 (37%), Positives = 25/37 (67%)
Query: 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
++ L G++ + G++ + G SGAGKSTLL ++ G+
Sbjct: 15 RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGI 51
>gnl|CDD|216791 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase. The full-length
GTPase protein is required for the complete activity of
the protein of interacting with the 50S ribosome and
binding of both adenine and guanine nucleotides, with a
preference for guanine nucleotide.
Length = 117
Score = 33.4 bits (77), Expect = 0.032
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 259 AIMGPSGAGKSTLLNILAG 277
A++G GKSTL+N L G
Sbjct: 3 ALVGRPNVGKSTLINALTG 21
>gnl|CDD|233821 TIGR02322, phosphon_PhnN, phosphonate metabolism
protein/1,5-bisphosphokinase (PRPP-forming) PhnN.
Members of this family resemble PhnN of phosphonate
utilization operons, where different such operons confer
the ability to use somewhat different profiles of C-P
bond-containing compounds (see PMID:15231805), including
phosphites as well as phosphonates. PhnN in E. coli
shows considerable homology to guanylate kinases (EC
2.7.4.8), and has actually been shown to act as a ribose
1,5-bisphosphokinase (PRPP forming). This suggests an
analogous kinase reaction for phosphonate metabolism,
converting 5-phosphoalpha-1-(methylphosphono)ribose to
methylphosphono-PRPP [Central intermediary metabolism,
Phosphorus compounds].
Length = 179
Score = 34.3 bits (79), Expect = 0.033
Identities = 12/18 (66%), Positives = 15/18 (83%)
Query: 255 GQLTAIMGPSGAGKSTLL 272
G+L ++GPSGAGK TLL
Sbjct: 1 GRLIYVVGPSGAGKDTLL 18
>gnl|CDD|237536 PRK13873, PRK13873, conjugal transfer ATPase TrbE; Provisional.
Length = 811
Score = 35.3 bits (82), Expect = 0.034
Identities = 11/19 (57%), Positives = 16/19 (84%)
Query: 258 TAIMGPSGAGKSTLLNILA 276
T ++GP+GAGKS LL ++A
Sbjct: 444 TLVVGPTGAGKSVLLALMA 462
>gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 214
Score = 34.4 bits (79), Expect = 0.035
Identities = 14/25 (56%), Positives = 19/25 (76%)
Query: 254 AGQLTAIMGPSGAGKSTLLNILAGL 278
AG+ + G +GAGK+TLL +LAGL
Sbjct: 36 AGEALLVQGDNGAGKTTLLRVLAGL 60
>gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein;
Provisional.
Length = 264
Score = 34.8 bits (80), Expect = 0.036
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 245 LHGISGEFKAGQLTAIMGPSGAGKSTLL 272
+ + + Q+TA +GPSG GKST+L
Sbjct: 26 VKNVWLDIPKNQITAFIGPSGCGKSTIL 53
>gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 267
Score = 34.8 bits (80), Expect = 0.039
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 237 ADFLNKEILHG---ISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
++ + +S + GQ AI+G +G+GKSTL +LAG+
Sbjct: 18 TGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGM 62
>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein;
Provisional.
Length = 510
Score = 35.1 bits (81), Expect = 0.040
Identities = 13/34 (38%), Positives = 24/34 (70%)
Query: 245 LHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
L ++ G++ A++G +GAGKSTL+ +L+G+
Sbjct: 21 LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGI 54
>gnl|CDD|223561 COG0486, ThdF, Predicted GTPase [General function prediction only].
Length = 454
Score = 34.8 bits (81), Expect = 0.046
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 7/44 (15%)
Query: 240 LNKEILHGISGEFKAGQL------TAIMGPSGAGKSTLLNILAG 277
L E+ ++ K G++ I+G GKS+LLN L G
Sbjct: 197 LIAELDELLAT-AKQGKILREGLKVVIIGRPNVGKSSLLNALLG 239
>gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 34.6 bits (80), Expect = 0.047
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 245 LHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
L +S G+ AI+G +G+GKSTL +L GL
Sbjct: 23 LKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGL 56
>gnl|CDD|205733 pfam13555, AAA_29, P-loop containing region of AAA domain.
Length = 60
Score = 31.8 bits (73), Expect = 0.048
Identities = 10/15 (66%), Positives = 13/15 (86%)
Query: 258 TAIMGPSGAGKSTLL 272
T + GPSG+GKSTL+
Sbjct: 24 TLLTGPSGSGKSTLI 38
>gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 320
Score = 34.4 bits (79), Expect = 0.048
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 244 ILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
L+ IS F+ ++ I+G SG+GKSTL+ GL
Sbjct: 41 ALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGL 75
Score = 27.9 bits (62), Expect = 5.8
Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 96 GLDSSSCSQCVSLLANLAKQGRTVVATIHTPSALLFEKFDSLYALAKGHCIYRGS 150
GLD + + L+ + +TV HT +L E D + + KG + G+
Sbjct: 206 GLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVL-EVADEVIVMDKGKILKTGT 259
>gnl|CDD|222194 pfam13521, AAA_28, AAA domain.
Length = 162
Score = 33.7 bits (78), Expect = 0.048
Identities = 9/18 (50%), Positives = 10/18 (55%)
Query: 259 AIMGPSGAGKSTLLNILA 276
I G GK+TLL LA
Sbjct: 3 VITGGPSTGKTTLLEALA 20
>gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 34.4 bits (79), Expect = 0.054
Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 4/40 (10%)
Query: 241 NKEILHGISGEFKAGQLT--AIMGPSGAGKSTLLNILAGL 278
+KE L+ I+ F A + + A++GP+GAGKSTL G+
Sbjct: 16 SKEALNNIN--FIAPRNSRIAVIGPNGAGKSTLFRHFNGI 53
>gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 288
Score = 34.3 bits (78), Expect = 0.055
Identities = 19/45 (42%), Positives = 24/45 (53%)
Query: 234 HNPADFLNKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
+ P L I E K G TA++G +G+GKSTLL L GL
Sbjct: 11 YQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGL 55
Score = 27.4 bits (60), Expect = 9.3
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 96 GLDSSSCSQCVSLLANLAKQGRTVVATIHTPSALLFEKFDSLYALAKGHCIYRGSIS 152
GLD + + + L ++ + G+TVV H + + D +Y L KGH I G+ S
Sbjct: 174 GLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVA-DYADYVYLLEKGHIISCGTPS 229
>gnl|CDD|237393 PRK13477, PRK13477, bifunctional pantoate ligase/cytidylate kinase;
Provisional.
Length = 512
Score = 34.5 bits (80), Expect = 0.056
Identities = 15/26 (57%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
Query: 259 AIMGPSGAGKSTLLNILA---GLTYL 281
AI GP+GAGKST+ +A GL YL
Sbjct: 288 AIDGPAGAGKSTVTRAVAKKLGLLYL 313
>gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted
acetyltransferase domain [General function prediction
only].
Length = 593
Score = 34.4 bits (79), Expect = 0.057
Identities = 14/27 (51%), Positives = 20/27 (74%)
Query: 251 EFKAGQLTAIMGPSGAGKSTLLNILAG 277
E K G + A++G SGAGK+TLL ++ G
Sbjct: 405 EIKPGDVVAVVGQSGAGKTTLLRMILG 431
>gnl|CDD|206646 cd00880, Era_like, E. coli Ras-like protein (Era)-like GTPase. The
Era (E. coli Ras-like protein)-like family includes
several distinct subfamilies (TrmE/ThdF, FeoB, YihA
(EngB), Era, and EngA/YfgK) that generally show sequence
conservation in the region between the Walker A and B
motifs (G1 and G3 box motifs), to the exclusion of other
GTPases. TrmE is ubiquitous in bacteria and is a
widespread mitochondrial protein in eukaryotes, but is
absent from archaea. The yeast member of TrmE family,
MSS1, is involved in mitochondrial translation;
bacterial members are often present in
translation-related operons. FeoB represents an unusual
adaptation of GTPases for high-affinity iron (II)
transport. YihA (EngB) family of GTPases is typified by
the E. coli YihA, which is an essential protein involved
in cell division control. Era is characterized by a
distinct derivative of the KH domain (the pseudo-KH
domain) which is located C-terminal to the GTPase
domain. EngA and its orthologs are composed of two
GTPase domains and, since the sequences of the two
domains are more similar to each other than to other
GTPases, it is likely that an ancient gene duplication,
rather than a fusion of evolutionarily distinct GTPases,
gave rise to this family.
Length = 161
Score = 33.4 bits (77), Expect = 0.058
Identities = 11/19 (57%), Positives = 12/19 (63%)
Query: 259 AIMGPSGAGKSTLLNILAG 277
AI G GKS+LLN L G
Sbjct: 1 AIFGRPNVGKSSLLNALLG 19
>gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein;
Provisional.
Length = 271
Score = 34.1 bits (78), Expect = 0.058
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 245 LHGISGEFKAGQLTAIMGPSGAGKSTLLNIL 275
L I+ + ++TAI+GPSG GKST + L
Sbjct: 40 LKNINLDIHENEVTAIIGPSGCGKSTYIKTL 70
>gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 34.0 bits (78), Expect = 0.059
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLL 272
K+IL I+ + ++TA +GPSG GKST L
Sbjct: 18 KQILFDINLDIYKREVTAFIGPSGCGKSTFL 48
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 34.4 bits (79), Expect = 0.066
Identities = 12/26 (46%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Query: 248 ISGEFKAGQLTAIMGPSGAGKSTLLN 273
I F +G + I+GP+GAGKS++L+
Sbjct: 19 IEKLFDSG-IFLIVGPNGAGKSSILD 43
>gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 327
Score = 34.2 bits (79), Expect = 0.068
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 245 LHGISGEFKAGQLTAIMGPSGAGKSTL 271
L G+S + G+ A++G SG GKSTL
Sbjct: 31 LDGVSFTLERGKTLAVVGESGCGKSTL 57
>gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 33.8 bits (77), Expect = 0.076
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 239 FLNKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNIL 275
F + IL ++ + +TA++GPSG GKST + L
Sbjct: 13 FDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTL 49
>gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding
protein. Members of this protein family are the
ATP-binding subunit of a three-protein transporter. This
family belongs, more broadly, to the family of proline
and glycine-betaine transporters, but members have been
identified by direct characterization and by
bioinformatic means as choline transporters. Many
species have several closely-related members of this
family, probably with variable abilities to act
additionally on related quaternary amines [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 382
Score = 34.0 bits (78), Expect = 0.079
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 246 HGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
H S + + G++ +MG SG+GKSTLL + GL
Sbjct: 41 HNASLDIEEGEICVLMGLSGSGKSTLLRAVNGL 73
>gnl|CDD|221803 pfam12846, AAA_10, AAA-like domain. This family of domains contain
a P-loop motif that is characteristic of the AAA
superfamily. Many of the proteins in this family are
conjugative transfer proteins.
Length = 316
Score = 33.9 bits (78), Expect = 0.079
Identities = 13/19 (68%), Positives = 16/19 (84%)
Query: 258 TAIMGPSGAGKSTLLNILA 276
I+GPSG+GKSTLL +LA
Sbjct: 4 MLIVGPSGSGKSTLLKLLA 22
>gnl|CDD|222165 pfam13481, AAA_25, AAA domain. This AAA domain is found in a wide
variety of presumed DNA repair proteins.
Length = 154
Score = 32.6 bits (75), Expect = 0.085
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 254 AGQLTAIMGPSGAGKSTL-LNILAGLT 279
G LT + G G GKSTL L++ A +
Sbjct: 32 RGGLTLLAGAPGTGKSTLALDLAAAVA 58
>gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 33.5 bits (77), Expect = 0.088
Identities = 14/45 (31%), Positives = 25/45 (55%)
Query: 234 HNPADFLNKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
+ K+ L ++ E + G+ ++G +G+GKSTL+ L GL
Sbjct: 12 YMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGL 56
>gnl|CDD|223637 COG0563, Adk, Adenylate kinase and related kinases [Nucleotide
transport and metabolism].
Length = 178
Score = 33.0 bits (76), Expect = 0.089
Identities = 15/26 (57%), Positives = 17/26 (65%), Gaps = 3/26 (11%)
Query: 259 AIMGPSGAGKSTLLNILA---GLTYL 281
I+GP GAGKSTL LA GL +L
Sbjct: 4 LILGPPGAGKSTLAKKLAKKLGLPHL 29
>gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein
(MRP). This model describes multi drug
resistance-associated protein (MRP) in eukaryotes. The
multidrug resistance-associated protein is an integral
membrane protein that causes multidrug resistance when
overexpressed in mammalian cells. It belongs to ABC
transporter superfamily. The protein topology and
function was experimentally demonstrated by epitope
tagging and immunofluorescence. Insertion of tags in the
critical regions associated with drug efflux, abrogated
its function. The C-terminal domain seem to highly
conserved [Transport and binding proteins, Other].
Length = 1522
Score = 34.2 bits (78), Expect = 0.090
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 245 LHGISGEFKAGQLTAIMGPSGAGKSTLLNILAG 277
L+GI+ G L A++G G GKS+LL+ L
Sbjct: 654 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLA 686
>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter. This
model describes the photoreceptor protein (rim protein)
in eukaryotes. It is the member of ABC transporter
superfamily. Rim protein is a membrane glycoprotein
which is localized in the photoreceptor outer segment
discs. Mutation/s in its genetic loci is implicated in
the recessive Stargardt's disease [Transport and binding
proteins, Other].
Length = 2272
Score = 34.2 bits (78), Expect = 0.092
Identities = 15/27 (55%), Positives = 20/27 (74%)
Query: 252 FKAGQLTAIMGPSGAGKSTLLNILAGL 278
F Q+TA +G +GAGK+T L+IL GL
Sbjct: 953 FYENQITAFLGHNGAGKTTTLSILTGL 979
>gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 33.4 bits (76), Expect = 0.094
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNIL 275
K+ L+ I+ ++TA++GPSG GKST L L
Sbjct: 17 KQALNDINLPIYENKITALIGPSGCGKSTFLRCL 50
>gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor
regulator (CFTR). The model describes the cystis
fibrosis transmembrane conductor regulator (CFTR) in
eukaryotes. The principal role of this protein is
chloride ion conductance. The protein is predicted to
consist of 12 transmembrane domains. Mutations or
lesions in the genetic loci have been linked to the
aetiology of asthma, bronchiectasis, chronic obstructive
pulmonary disease etc. Disease-causing mutations have
been studied by 36Cl efflux assays in vitro cell
cultures and electrophysiology, all of which point to
the impairment of chloride channel stability and not the
biosynthetic processing per se [Transport and binding
proteins, Anions].
Length = 1490
Score = 34.1 bits (78), Expect = 0.095
Identities = 15/34 (44%), Positives = 24/34 (70%)
Query: 244 ILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAG 277
+L IS + + GQL A+ G +G+GKS+LL ++ G
Sbjct: 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMG 474
Score = 32.6 bits (74), Expect = 0.29
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNIL 275
+ +L +S + GQ ++G +G+GKSTLL+ L
Sbjct: 1232 RAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSAL 1265
>gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 33.5 bits (76), Expect = 0.096
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 245 LHGISGEFKAGQLTAIMGPSGAGKSTLLNIL 275
L GIS E + + A +GPSG GKST L +
Sbjct: 19 LKGISMEIEEKSVVAFIGPSGCGKSTFLRLF 49
>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system,
duplicated ATPase component [General function prediction
only].
Length = 534
Score = 33.8 bits (78), Expect = 0.100
Identities = 18/40 (45%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 242 KEILHGISGEFKAGQLTAIMGPSGAGKS-TLLNILAGLTY 280
E + GIS + +AG+ A++G SG+GKS T L+IL L
Sbjct: 23 VEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPS 62
Score = 33.4 bits (77), Expect = 0.11
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 245 LHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
+ GIS + GQ ++G SG+GKSTL L L
Sbjct: 303 VDGISLTLRRGQTLGLVGESGSGKSTLGLALLRL 336
>gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation
protein NodI. This protein is required for normal
nodulation by nitrogen-fixing root nodule bacteria such
as Mesorhizobium loti. It is a member of the family of
ABC transporter ATP binding proteins and works with NodJ
to export a nodulation signal molecule. This model does
not recognize the highly divergent NodI from
Azorhizobium caulinodans [Cellular processes, Other,
Transport and binding proteins, Other].
Length = 303
Score = 33.4 bits (76), Expect = 0.11
Identities = 13/41 (31%), Positives = 26/41 (63%)
Query: 239 FLNKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLT 279
+ +K +++ +S G+ ++GP+GAGKST+ +L G+
Sbjct: 14 YGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMI 54
>gnl|CDD|213788 TIGR03263, guanyl_kin, guanylate kinase. Members of this family
are the enzyme guanylate kinase, also called GMP kinase.
This enzyme transfers a phosphate from ATP to GMP,
yielding ADP and GDP [Purines, pyrimidines, nucleosides,
and nucleotides, Nucleotide and nucleoside
interconversions].
Length = 179
Score = 32.8 bits (76), Expect = 0.11
Identities = 16/29 (55%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 257 LTAIMGPSGAGKSTLLN-ILAGLTYLNFS 284
L I GPSGAGKSTL+ +L L FS
Sbjct: 2 LIVISGPSGAGKSTLVKALLEEDPNLKFS 30
>gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of
the osmoprotectant transporter. OpuCA is a the ATP
binding component of a bacterial solute transporter that
serves a protective role to cells growing in a
hyperosmolar environment. ABC (ATP-binding cassette)
transporter nucleotide-binding domain; ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition, to the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 242
Score = 33.0 bits (76), Expect = 0.12
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 247 GISGEFKAGQLTAIMGPSGAGKSTLL 272
++ E G+ ++GPSG+GK+T +
Sbjct: 19 NLNLEIAKGEFLVLIGPSGSGKTTTM 44
>gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 258
Score = 33.1 bits (75), Expect = 0.12
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNIL 275
K+ L +S + +TA++GPSG GKST + L
Sbjct: 25 KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCL 58
>gnl|CDD|235825 PRK06547, PRK06547, hypothetical protein; Provisional.
Length = 172
Score = 32.4 bits (74), Expect = 0.13
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 260 IMGPSGAGKSTLLNILAGLT 279
I G SG+GK+TL LA T
Sbjct: 20 IDGRSGSGKTTLAGALAART 39
>gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 33.1 bits (75), Expect = 0.13
Identities = 11/32 (34%), Positives = 22/32 (68%)
Query: 241 NKEILHGISGEFKAGQLTAIMGPSGAGKSTLL 272
+K+ + ++ + + G + A++GPSG GK+T L
Sbjct: 16 DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFL 47
>gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 33.1 bits (75), Expect = 0.13
Identities = 15/55 (27%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 96 GLDSSSCSQCVSLLANLAKQGRTVVATIHTPSALLFEKFDSLYALAKGHCIYRGS 150
GLD + +Q ++++ + QG V+ + H L++E D++Y L +G + G+
Sbjct: 166 GLDPAGRTQMIAIIRRIVAQGNHVIISSHDID-LIYEISDAVYVLRQGQILTHGA 219
Score = 32.3 bits (73), Expect = 0.24
Identities = 14/40 (35%), Positives = 26/40 (65%)
Query: 239 FLNKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
+ ++ +L G++ +F +T ++G +G GKSTL L+GL
Sbjct: 11 YQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGL 50
>gnl|CDD|235392 PRK05291, trmE, tRNA modification GTPase TrmE; Reviewed.
Length = 449
Score = 33.2 bits (77), Expect = 0.13
Identities = 10/20 (50%), Positives = 11/20 (55%)
Query: 258 TAIMGPSGAGKSTLLNILAG 277
I G GKS+LLN L G
Sbjct: 218 VVIAGRPNVGKSSLLNALLG 237
>gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 33.1 bits (76), Expect = 0.14
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 232 AYHNPADFLNKEILHGISGEFKAGQLTAIMGPSGAGKSTL 271
Y + + K L ++ E K G+ I+G +G+GKST+
Sbjct: 13 KYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTI 52
>gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic
fibrosis transmembrane regulator, subfamily C. The CFTR
subfamily domain 1. The cystic fibrosis transmembrane
regulator (CFTR), the product of the gene mutated in
patients with cystic fibrosis, has adapted the ABC
transporter structural motif to form a tightly regulated
anion channel at the apical surface of many epithelia.
Use of the term assembly of a functional ion channel
implies the coming together of subunits, or at least
smaller not-yet functional components of the active
whole. In fact, on the basis of current knowledge only
the CFTR polypeptide itself is required to form an ATP-
and protein kinase A-dependent low-conductance chloride
channel of the type present in the apical membrane of
many epithelial cells. CFTR displays the typical
organization (IM-ABC)2 and carries a characteristic
hydrophilic R-domain that separates IM1-ABC1 from
IM2-ABC2.
Length = 282
Score = 32.9 bits (75), Expect = 0.16
Identities = 12/34 (35%), Positives = 24/34 (70%)
Query: 244 ILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAG 277
+L I+ + + G++ AI G +G+GK++LL ++ G
Sbjct: 52 VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILG 85
>gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 32.6 bits (74), Expect = 0.16
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 245 LHGISGEFKAGQLTAIMGPSGAGKSTLLNIL 275
L I+ ++TAI+GPSG GKST + L
Sbjct: 28 LKNINLSIPENEVTAIIGPSGCGKSTFIKTL 58
>gnl|CDD|236442 PRK09270, PRK09270, nucleoside triphosphate hydrolase
domain-containing protein; Reviewed.
Length = 229
Score = 32.6 bits (75), Expect = 0.16
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Query: 240 LNKEILHGISGEFKAGQ---LTAIMGPSGAGKSTLLNILAGL 278
++K +L ++ Q + I GP GAGKSTL L L
Sbjct: 15 VHKPLLRRLAALQAEPQRRTIVGIAGPPGAGKSTLAEFLEAL 56
>gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding
protein; Provisional.
Length = 241
Score = 32.6 bits (74), Expect = 0.18
Identities = 10/37 (27%), Positives = 24/37 (64%)
Query: 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
+ ++ +S +G++ ++GP+GAGK+T ++ G+
Sbjct: 16 RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGI 52
>gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding
protein SapF; Provisional.
Length = 267
Score = 32.5 bits (74), Expect = 0.18
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 243 EILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLT 279
E + +S + GQ AI+G +G+GKSTL +LAG+
Sbjct: 27 EAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMI 63
>gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter
ATP-binding protein; Provisional.
Length = 491
Score = 32.8 bits (75), Expect = 0.18
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 253 KAGQLTAIMGPSGAGKSTLLNILAGL 278
+ + A+MG +GAGKSTLL L G+
Sbjct: 22 RPHSIHALMGENGAGKSTLLKCLFGI 47
>gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein;
Provisional.
Length = 638
Score = 32.8 bits (75), Expect = 0.20
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 237 ADFLNKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAG 277
A + ++ IL I G ++G +GAGKSTL+ +LAG
Sbjct: 320 AGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAG 360
Score = 28.2 bits (63), Expect = 5.7
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 255 GQLTAIMGPSGAGKSTLLNILAG 277
GQ ++G +G GKSTLL +L
Sbjct: 27 GQKVGLVGKNGCGKSTLLALLKN 49
>gnl|CDD|129128 TIGR00017, cmk, cytidylate kinase. This family consists of
cytidylate kinase, which catalyzes the phosphorylation
of cytidine 5-monophosphate (dCMP) to cytidine 5
-diphosphate (dCDP) in the presence of ATP or GTP. UMP
and dCMP can also act as acceptors [Purines,
pyrimidines, nucleosides, and nucleotides, Nucleotide
and nucleoside interconversions].
Length = 217
Score = 32.0 bits (73), Expect = 0.22
Identities = 15/27 (55%), Positives = 18/27 (66%), Gaps = 3/27 (11%)
Query: 259 AIMGPSGAGKSTLLNILA---GLTYLN 282
AI GPSGAGKST+ +A G YL+
Sbjct: 6 AIDGPSGAGKSTVAKAVAEKLGYAYLD 32
>gnl|CDD|213207 cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50. The
catalytic domains of Rad50 are similar to the
ATP-binding cassette of ABC transporters, but are not
associated with membrane-spanning domains. The conserved
ATP-binding motifs common to Rad50 and the ABC
transporter family include the Walker A and Walker B
motifs, the Q loop, a histidine residue in the switch
region, a D-loop, and a conserved LSGG sequence. This
conserved sequence, LSGG, is the most specific and
characteristic motif of this family and is thus known as
the ABC signature sequence.
Length = 204
Score = 31.8 bits (73), Expect = 0.23
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Query: 251 EFKAGQLTAIMGPSGAGKSTLLN-ILAGLT 279
EF + LT I+G +GAGK+T++ + LT
Sbjct: 19 EFFSP-LTLIVGQNGAGKTTIIEALKYALT 47
>gnl|CDD|172418 PRK13898, PRK13898, type IV secretion system ATPase VirB4;
Provisional.
Length = 800
Score = 32.4 bits (74), Expect = 0.26
Identities = 11/18 (61%), Positives = 15/18 (83%)
Query: 258 TAIMGPSGAGKSTLLNIL 275
T I+GP+GAGK+ L+N L
Sbjct: 449 TLIIGPTGAGKTVLMNFL 466
>gnl|CDD|238836 cd01673, dNK, Deoxyribonucleoside kinase (dNK) catalyzes the
phosphorylation of deoxyribonucleosides to yield
corresponding monophosphates (dNMPs). This family
consists of various deoxynucleoside kinases including
deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC
2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC
2.7.1.21) kinases. They are key enzymes in the salvage
of deoxyribonucleosides originating from extra- or
intracellular breakdown of DNA.
Length = 193
Score = 31.8 bits (73), Expect = 0.26
Identities = 10/18 (55%), Positives = 11/18 (61%)
Query: 259 AIMGPSGAGKSTLLNILA 276
+ G GAGKSTL LA
Sbjct: 3 VVEGNIGAGKSTLAKELA 20
>gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of
CFTR,subfamily C. The cystic fibrosis transmembrane
regulator (CFTR), the product of the gene mutated in
patients with cystic fibrosis, has adapted the ABC
transporter structural motif to form a tightly regulated
anion channel at the apical surface of many epithelia.
Use of the term assembly of a functional ion channel
implies the coming together of subunits or at least
smaller not-yet functional components of the active
whole. In fact, on the basis of current knowledge only
the CFTR polypeptide itself is required to form an ATP-
and protein kinase A-dependent low-conductance chloride
channel of the type present in the apical membrane of
many epithelial cells. CFTR displays the typical
organization (IM-ABC)2 and carries a characteristic
hydrophilic R-domain that separates IM1-ABC1 from
IM2-ABC2.
Length = 275
Score = 32.1 bits (73), Expect = 0.28
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 244 ILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTY 280
+L IS GQ ++G +G+GKSTLL+ L
Sbjct: 19 VLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN 55
>gnl|CDD|237040 PRK12289, PRK12289, GTPase RsgA; Reviewed.
Length = 352
Score = 32.3 bits (74), Expect = 0.28
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 254 AGQLTAIMGPSGAGKSTLLNIL 275
++T + GPSG GKS+L+N L
Sbjct: 171 RNKITVVAGPSGVGKSSLINRL 192
>gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed.
Length = 635
Score = 32.2 bits (74), Expect = 0.29
Identities = 11/18 (61%), Positives = 15/18 (83%)
Query: 260 IMGPSGAGKSTLLNILAG 277
++G +GAGKSTL+ IL G
Sbjct: 34 LVGRNGAGKSTLMKILNG 51
Score = 30.3 bits (69), Expect = 1.2
Identities = 13/36 (36%), Positives = 24/36 (66%)
Query: 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAG 277
K+++ S + + G A++GP+G GK+TLL ++ G
Sbjct: 332 KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLG 367
>gnl|CDD|206650 cd01851, GBP, Guanylate-binding protein (GBP) family (N-terminal
domain). Guanylate-binding protein (GBP), N-terminal
domain. Guanylate-binding proteins (GBPs) define a group
of proteins that are synthesized after activation of the
cell by interferons. The biochemical properties of GBPs
are clearly different from those of Ras-like and
heterotrimeric GTP-binding proteins. They bind guanine
nucleotides with low affinity (micromolar range), are
stable in their absence and have a high turnover GTPase.
In addition to binding GDP/GTP, they have the unique
ability to bind GMP with equal affinity and hydrolyze
GTP not only to GDP, but also to GMP. Furthermore, two
unique regions around the base and the phosphate-binding
areas, the guanine and the phosphate caps, respectively,
give the nucleotide-binding site a unique appearance not
found in the canonical GTP-binding proteins. The
phosphate cap, which constitutes the region analogous to
switch I, completely shields the phosphate-binding site
from solvent such that a potential GTPase-activating
protein (GAP) cannot approach.
Length = 224
Score = 31.9 bits (73), Expect = 0.30
Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 259 AIMGPSGAGKSTLLNILAGLTYLNFS 284
++ G +GKS LLN L G T F
Sbjct: 11 SVFGSQSSGKSFLLNHLFG-TSDGFD 35
>gnl|CDD|235666 PRK06002, fliI, flagellum-specific ATP synthase; Validated.
Length = 450
Score = 32.3 bits (74), Expect = 0.31
Identities = 14/24 (58%), Positives = 15/24 (62%)
Query: 254 AGQLTAIMGPSGAGKSTLLNILAG 277
AGQ I SG GKSTLL +LA
Sbjct: 164 AGQRIGIFAGSGVGKSTLLAMLAR 187
>gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 286
Score = 31.8 bits (72), Expect = 0.31
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 243 EILHGISGEFKAGQLTAIMGPSGAGKSTLL 272
E + ++ + + +TAI+GPSG GKST L
Sbjct: 53 EAVKKVNADILSKYVTAIIGPSGCGKSTFL 82
>gnl|CDD|238899 cd01918, HprK_C, HprK/P, the bifunctional histidine-containing
protein kinase/phosphatase, controls the phosphorylation
state of the phosphocarrier protein HPr and regulates
the utilization of carbon sources by gram-positive
bacteria. It catalyzes both the ATP-dependent
phosphorylation of Ser-46 of HPr and its
dephosphorylation by phosphorolysis. The latter reaction
uses inorganic phosphate as substrate and produces
pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK)
and the C-terminal catalytic domain of HprK/P are
structurally similar with conserved active site residues
suggesting these two phosphotransferases have related
functions. The HprK/P N-terminal domain is structurally
similar to the N-terminal domains of the MurE and MurF
amino acid ligases.
Length = 149
Score = 31.1 bits (71), Expect = 0.33
Identities = 9/12 (75%), Positives = 9/12 (75%)
Query: 260 IMGPSGAGKSTL 271
I GPSG GKS L
Sbjct: 19 ITGPSGIGKSEL 30
>gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein;
Provisional.
Length = 582
Score = 32.3 bits (74), Expect = 0.34
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 245 LHGISGEFKAGQLTAIMGPSGAGKSTLLNIL 275
L I+ + AG+ A++G SG+GKST+ N+L
Sbjct: 359 LRNINFKIPAGKTVALVGRSGSGKSTIANLL 389
>gnl|CDD|222000 pfam13238, AAA_18, AAA domain.
Length = 128
Score = 30.9 bits (70), Expect = 0.36
Identities = 9/26 (34%), Positives = 11/26 (42%)
Query: 259 AIMGPSGAGKSTLLNILAGLTYLNFS 284
I G G+GK+TL LA
Sbjct: 2 LITGTPGSGKTTLAKELAERLGDVLR 27
>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding
subunit. This model describes the glycine
betaine/L-proline ATP binding subunit in bacteria and
its equivalents in archaea. This transport system belong
to the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Functionally, this transport system is involved
in osmoregulation. Under conditions of stress, the
organism recruits these transport system to accumulate
glycine betaine and other solutes which offer
osmo-protection. It has been demonstrated that glycine
betaine uptake is accompanied by symport with sodium
ions. The locus has been named variously as proU or
opuA. A gene library from L.lactis functionally
complements an E.coli proU mutant. The comlementing
locus is similar to a opuA locus in B.sutlis. This
clarifies the differences in nomenclature [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 363
Score = 31.7 bits (72), Expect = 0.37
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 255 GQLTAIMGPSGAGKSTLLNIL 275
G++ IMG SG+GKST + +L
Sbjct: 19 GEIFVIMGLSGSGKSTTVRML 39
>gnl|CDD|223543 COG0467, RAD55, RecA-superfamily ATPases implicated in signal
transduction [Signal transduction mechanisms].
Length = 260
Score = 31.7 bits (72), Expect = 0.39
Identities = 11/30 (36%), Positives = 13/30 (43%), Gaps = 3/30 (10%)
Query: 243 EILHGISGEFKAGQLTAIMGPSGAGKSTLL 272
EIL G G + I GP G GK+
Sbjct: 14 EILGG---GLPRGSVVLITGPPGTGKTIFA 40
>gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter
proteins. ABC-type Class 2 contains systems involved in
cellular processes other than transport. These families
are characterized by the fact that the ABC subunit is
made up of duplicated, fused ABC modules (ABC2). No
known transmembrane proteins or domains are associated
with these proteins.
Length = 162
Score = 30.8 bits (70), Expect = 0.40
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 251 EFKAGQLTAIMGPSGAGKSTLLN 273
F G LT I GP+G+GKST+L+
Sbjct: 17 TFGEGSLTIITGPNGSGKSTILD 39
>gnl|CDD|182330 PRK10246, PRK10246, exonuclease subunit SbcC; Provisional.
Length = 1047
Score = 32.1 bits (73), Expect = 0.40
Identities = 13/22 (59%), Positives = 17/22 (77%)
Query: 252 FKAGQLTAIMGPSGAGKSTLLN 273
F + L AI GP+GAGK+TLL+
Sbjct: 27 FASNGLFAITGPTGAGKTTLLD 48
>gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein;
Provisional.
Length = 258
Score = 31.6 bits (72), Expect = 0.42
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 10/36 (27%)
Query: 250 GEFKAGQ----------LTAIMGPSGAGKSTLLNIL 275
G F A + +TA +GPSG GKST+L L
Sbjct: 15 GSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTL 50
>gnl|CDD|234624 PRK00089, era, GTPase Era; Reviewed.
Length = 292
Score = 31.6 bits (73), Expect = 0.45
Identities = 15/27 (55%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 251 EFKAGQLTAIMGPSGAGKSTLLNILAG 277
FK+G AI+G GKSTLLN L G
Sbjct: 2 GFKSG-FVAIVGRPNVGKSTLLNALVG 27
>gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 269
Score = 31.3 bits (71), Expect = 0.52
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 245 LHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
L +S GQ T+I+G +G+GKST+ ++ G+
Sbjct: 25 LKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGI 58
>gnl|CDD|236648 PRK10078, PRK10078, ribose 1,5-bisphosphokinase; Provisional.
Length = 186
Score = 30.9 bits (70), Expect = 0.53
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 255 GQLTAIMGPSGAGKSTLLNIL 275
G+L +MGPSG+GK +LL L
Sbjct: 2 GKLIWLMGPSGSGKDSLLAAL 22
>gnl|CDD|238550 cd01130, VirB11-like_ATPase, Type IV secretory pathway component
VirB11, and related ATPases. The homohexamer, VirB11 is
one of eleven Vir proteins, which are required for
T-pilus biogenesis and virulence in the transfer of
T-DNA from the Ti (tumor-inducing) plasmid of bacterial
to plant cells. The pilus is a fibrous cell surface
organelle, which mediates adhesion between bacteria
during conjugative transfer or between bacteria and host
eukaryotic cells during infection. VirB11- related
ATPases include the archaeal flagella biosynthesis
protein and the pilus assembly proteins CpaF/TadA and
TrbB. This alignment contains the C-terminal domain,
which is the ATPase.
Length = 186
Score = 30.7 bits (70), Expect = 0.56
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 254 AGQLTAIMGPSGAGKSTLLNILAGL 278
A + I G +G+GK+TLLN L
Sbjct: 24 ARKNILISGGTGSGKTTLLNALLAF 48
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional.
Length = 880
Score = 31.6 bits (72), Expect = 0.58
Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
Query: 251 EFKAGQLTAIMGPSGAGKSTLLN-ILAGL 278
EF G + I+G +G+GKS++L IL GL
Sbjct: 20 EFDDG-INLIIGQNGSGKSSILEAILVGL 47
>gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding
cassette component of monosaccharide transport system.
This family represents domain II of the carbohydrate
uptake proteins that transport only monosaccharides
(Monos). The Carb_Monos family is involved in the uptake
of monosaccharides, such as pentoses (such as xylose,
arabinose, and ribose) and hexoses (such as xylose,
arabinose, and ribose), that cannot be broken down to
simple sugars by hydrolysis. In members of Carb_Monos
family the single hydrophobic gene product forms a
homodimer, while the ABC protein represents a fusion of
two nucleotide-binding domains. However, it is assumed
that two copies of the ABC domains are present in the
assembled transporter.
Length = 182
Score = 30.5 bits (70), Expect = 0.59
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 245 LHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
+ +S E +AG++ I G G G++ L L GL
Sbjct: 16 VRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGL 49
>gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 265
Score = 30.7 bits (69), Expect = 0.63
Identities = 12/17 (70%), Positives = 15/17 (88%)
Query: 256 QLTAIMGPSGAGKSTLL 272
Q+TA++GPSG GKST L
Sbjct: 43 QVTALIGPSGCGKSTFL 59
>gnl|CDD|237525 PRK13830, PRK13830, conjugal transfer protein TrbE; Provisional.
Length = 818
Score = 31.4 bits (71), Expect = 0.63
Identities = 12/19 (63%), Positives = 16/19 (84%)
Query: 258 TAIMGPSGAGKSTLLNILA 276
T I GP+G+GKSTLL ++A
Sbjct: 459 TLIFGPTGSGKSTLLALIA 477
>gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT)
Family protei. [Transport and binding proteins,
Carbohydrates, organic alcohols, and acids].
Length = 659
Score = 31.3 bits (71), Expect = 0.64
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 248 ISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
+S E +G I GP+G GKS+L IL L
Sbjct: 471 LSFEVPSGNNLLICGPNGCGKSSLFRILGEL 501
>gnl|CDD|206690 cd04104, p47_IIGP_like, p47 GTPase family includes IGTP, TGTP/Mg21,
IRG-47, GTPI, LRG-47, and IIGP1. The p47 GTPase family
consists of several highly homologous proteins,
including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and
IIGP1. They are found in higher eukaryotes where they
play a role in immune resistance against intracellular
pathogens. p47 proteins exist at low resting levels in
mouse cells, but are strongly induced by Type II
interferon (IFN-gamma). ITGP is critical for resistance
to Toxoplasma gondii infection and in involved in
inhibition of Coxsackievirus-B3-induced apoptosis. TGTP
was shown to limit vesicular stomatitis virus (VSV)
infection of fibroblasts in vitro. IRG-47 is involved in
resistance to T. gondii infection. LRG-47 has been
implicated in resistance to T. gondii, Listeria
monocytogenes, Leishmania, and mycobacterial infections.
IIGP1 has been shown to localize to the ER and to the
Golgi membranes in IFN-induced cells and inflamed
tissues. In macrophages, IIGP1 interacts with hook3, a
microtubule binding protein that participates in the
organization of the cis-Golgi compartment.
Length = 197
Score = 30.8 bits (70), Expect = 0.65
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 259 AIMGPSGAGKSTLLNILAGL 278
A+ G SGAGKS+ +N L G+
Sbjct: 5 AVTGESGAGKSSFINALRGI 24
>gnl|CDD|238556 cd01136, ATPase_flagellum-secretory_path_III, Flagellum-specific
ATPase/type III secretory pathway virulence-related
protein. This group of ATPases are responsible for the
export of flagellum and virulence-related proteins. The
bacterial flagellar motor is similar to the F0F1-ATPase,
in that they both are proton driven rotary molecular
devices. However, the main function of the bacterial
flagellar motor is to rotate the flagellar filament for
cell motility. Intracellular pathogens such as
Salmonella and Chlamydia also have proteins which are
similar to the flagellar-specific ATPase, but function
in the secretion of virulence-related proteins via the
type III secretory pathway.
Length = 326
Score = 31.1 bits (71), Expect = 0.67
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 255 GQLTAIMGPSGAGKSTLLNILA 276
GQ I SG GKSTLL ++A
Sbjct: 69 GQRLGIFAGSGVGKSTLLGMIA 90
>gnl|CDD|238979 cd02021, GntK, Gluconate kinase (GntK) catalyzes the phosphoryl
transfer from ATP to gluconate. The resulting product
gluconate-6-phoshate is an important precursor of
gluconate metabolism. GntK acts as a dimmer composed of
two identical subunits.
Length = 150
Score = 30.3 bits (69), Expect = 0.68
Identities = 10/17 (58%), Positives = 13/17 (76%)
Query: 260 IMGPSGAGKSTLLNILA 276
+MG SG+GKST+ LA
Sbjct: 4 VMGVSGSGKSTVGKALA 20
>gnl|CDD|237355 PRK13342, PRK13342, recombination factor protein RarA; Reviewed.
Length = 413
Score = 30.8 bits (71), Expect = 0.69
Identities = 15/34 (44%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Query: 252 FKAGQLTAIM--GPSGAGKSTLLNILAGLTYLNF 283
+AG+L++++ GP G GK+TL I+AG T F
Sbjct: 31 IEAGRLSSMILWGPPGTGKTTLARIIAGATDAPF 64
>gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 30.8 bits (69), Expect = 0.70
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 245 LHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
L+G+S G+ +I+G +G+GKST ++ GL
Sbjct: 23 LNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGL 56
>gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and
permease components [Secondary metabolites biosynthesis,
transport, and catabolism / Inorganic ion transport and
metabolism].
Length = 546
Score = 30.9 bits (70), Expect = 0.71
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 248 ISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
I+ K G+L ++G +G+GKSTL +L GL
Sbjct: 342 INLTIKRGELVFLIGGNGSGKSTLAMLLTGL 372
>gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD;
Provisional.
Length = 254
Score = 30.8 bits (70), Expect = 0.74
Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 5/46 (10%)
Query: 242 KEILHGISGEFKAGQLTAIMGPSGAGKS----TLLNIL-AGLTYLN 282
+ ++HG+S + G++ A++G SG+GKS L IL AG+
Sbjct: 16 QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTA 61
>gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 282
Score = 30.5 bits (69), Expect = 0.75
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
K L+ IS G TA++G +G+GKST+ ++ GL
Sbjct: 20 KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGL 56
>gnl|CDD|234806 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional.
Length = 1809
Score = 31.3 bits (71), Expect = 0.75
Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 8/61 (13%)
Query: 220 VPHLASLGLPCPAYHNPADFLNKEILHG----ISGEFKAGQLTAIMGPSGAGKSTLL-NI 274
+P+L P P PAD K I LTA+ GPS +GK +L+ +I
Sbjct: 925 LPYLPD---PSPKPPVPADITIKNAYQHNLKHIDLSLPRNALTAVTGPSASGKHSLVFDI 981
Query: 275 L 275
L
Sbjct: 982 L 982
Score = 29.4 bits (66), Expect = 2.4
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 241 NKEILHGISGEFKAGQLTAIMGPSGAGKSTLLN 273
K L ++ G+LT + G SG+GKS+L+N
Sbjct: 607 TKHNLKDLTISLPLGRLTVVTGVSGSGKSSLIN 639
>gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional.
Length = 1495
Score = 31.1 bits (70), Expect = 0.76
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 244 ILHGISGEFKAGQLTAIMGPSGAGKSTLLNIL 275
+LHG+S + ++G +GAGKS++LN L
Sbjct: 1251 VLHGLSFFVSPSEKVGVVGRTGAGKSSMLNAL 1282
Score = 29.6 bits (66), Expect = 2.1
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 240 LNKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAG 277
+K L I+ E G L AI+G +G GK++L++ + G
Sbjct: 628 TSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLG 665
>gnl|CDD|240174 cd05153, HomoserineK_II, Homoserine Kinase, type II. Homoserine
kinase is part of a larger superfamily that includes the
catalytic domains of other kinases, such as the typical
serine/threonine/tyrosine protein kinases (PKs), RIO
kinases, actin-fragmin kinase (AFK), and
phosphoinositide 3-kinase (PI3K). This subfamily is
composed of unusual homoserine kinases, from a subset of
bacteria, which have a PK fold. These proteins do not
bear any similarity to the GHMP family homoserine
kinases present in most bacteria and eukaryotes.
Homoserine kinase catalyzes the transfer of the
gamma-phosphoryl group from ATP to L-homoserine
producing L-homoserine phosphate, an intermediate in the
production of the amino acids threonine, methionine, and
isoleucine.
Length = 296
Score = 30.7 bits (70), Expect = 0.76
Identities = 24/89 (26%), Positives = 33/89 (37%), Gaps = 14/89 (15%)
Query: 154 LVPHLASLGLPCPAYHNPADFPNLAKQGRTVVATIHTPSALLFEKFD--SLYALAKGHCI 211
L+ HLA GLP P P + G ++ + A L E L HC
Sbjct: 59 LLDHLAERGLPVPR-------PIADRDGEY-LSELAGKPAALVEFLAGEHLTRPTAAHCR 110
Query: 212 YRGS-ISRLVPHLASLGLPCPAYHNPADF 239
G ++RL HLA+ P +N
Sbjct: 111 QIGEALARL--HLAAQSFP-GERNNLRGL 136
>gnl|CDD|215651 pfam00006, ATP-synt_ab, ATP synthase alpha/beta family,
nucleotide-binding domain. This family includes the ATP
synthase alpha and beta subunits, the ATP synthase
associated with flagella and the termination factor Rho.
Length = 213
Score = 30.5 bits (70), Expect = 0.81
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 255 GQLTAIMGPSGAGKSTLLNILA 276
GQ I G SG GK+ LL ++A
Sbjct: 15 GQRIGIFGGSGTGKTVLLGMIA 36
>gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 30.6 bits (69), Expect = 0.82
Identities = 16/45 (35%), Positives = 26/45 (57%)
Query: 234 HNPADFLNKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
++P + K+ L IS E + G A++G +G+GKSTL+ L
Sbjct: 12 YSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNAL 56
>gnl|CDD|224081 COG1159, Era, GTPase [General function prediction only].
Length = 298
Score = 30.6 bits (70), Expect = 0.82
Identities = 15/27 (55%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 251 EFKAGQLTAIMGPSGAGKSTLLNILAG 277
+FK+G AI+G GKSTLLN L G
Sbjct: 3 KFKSG-FVAIIGRPNVGKSTLLNALVG 28
>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General
function prediction only].
Length = 219
Score = 30.3 bits (68), Expect = 0.83
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 259 AIMGPSGAGKSTLLN 273
++G G GK+TLLN
Sbjct: 9 VVLGDGGVGKTTLLN 23
>gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding
protein. Members of this family are the ATP-binding
protein of the D-methionine ABC transporter complex.
Known members belong to the Proteobacteria.
Length = 343
Score = 30.6 bits (69), Expect = 0.86
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 245 LHGISGEFKAGQLTAIMGPSGAGKSTLL 272
L+ +S AGQ+ ++G SGAGKSTL+
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLI 48
>gnl|CDD|238835 cd01672, TMPK, Thymidine monophosphate kinase (TMPK), also known as
thymidylate kinase, catalyzes the phosphorylation of
thymidine monophosphate (TMP) to thymidine diphosphate
(TDP) utilizing ATP as its preferred phophoryl donor.
TMPK represents the rate-limiting step in either de novo
or salvage biosynthesis of thymidine triphosphate (TTP).
Length = 200
Score = 30.3 bits (69), Expect = 0.91
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 259 AIMGPSGAGKSTLLNILA 276
G GAGK+TL+ +LA
Sbjct: 4 VFEGIDGAGKTTLIELLA 21
>gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 30.5 bits (69), Expect = 0.95
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 241 NKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
K L+ +S K G+ +I+G +G+GKST + ++ GL
Sbjct: 19 EKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGL 56
>gnl|CDD|226425 COG3910, COG3910, Predicted ATPase [General function prediction
only].
Length = 233
Score = 30.1 bits (68), Expect = 0.96
Identities = 14/26 (53%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Query: 251 EFKAGQLTAIMGPSGAGKSTLLNILA 276
EF+A +T I G +G+GKSTLL +A
Sbjct: 34 EFRA-PITFITGENGSGKSTLLEAIA 58
>gnl|CDD|213817 TIGR03496, FliI_clade1, flagellar protein export ATPase FliI.
Members of this protein family are the FliI protein of
bacterial flagellum systems. This protein acts to drive
protein export for flagellar biosynthesis. The most
closely related family is the YscN family of bacterial
type III secretion systems. This model represents one
(of three) segment of the FliI family tree. These have
been modeled separately in order to exclude the type III
secretion ATPases more effectively [Cellular processes,
Chemotaxis and motility].
Length = 411
Score = 30.5 bits (70), Expect = 0.96
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 255 GQLTAIMGPSGAGKSTLLNILAGLT 279
GQ I SG GKSTLL ++A T
Sbjct: 137 GQRMGIFAGSGVGKSTLLGMMARYT 161
>gnl|CDD|213246 cd03279, ABC_sbcCD, ATP-binding cassette domain of sbcCD. SbcCD
and other Mre11/Rad50 (MR) complexes are implicated in
the metabolism of DNA ends. They cleave ends sealed by
hairpin structures and are thought to play a role in
removing protein bound to DNA termini.
Length = 213
Score = 29.9 bits (68), Expect = 0.97
Identities = 11/16 (68%), Positives = 13/16 (81%)
Query: 257 LTAIMGPSGAGKSTLL 272
L I GP+GAGKST+L
Sbjct: 30 LFLICGPTGAGKSTIL 45
>gnl|CDD|236482 PRK09361, radB, DNA repair and recombination protein RadB;
Provisional.
Length = 225
Score = 30.2 bits (69), Expect = 0.98
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Query: 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLNFSK 285
E+L G F+ G +T I GP G+GK+ + LA N K
Sbjct: 13 DELL---GGGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKK 53
>gnl|CDD|232848 TIGR00157, TIGR00157, ribosome small subunit-dependent GTPase A.
Members of this protein were designated YjeQ and are now
designated RsgA (ribosome small subunit-dependent GTPase
A). The strongest motif in the alignment of these
proteins is GXSGVGKS[ST], a classic P-loop for
nucleotide binding. This protein has been shown to
cleave GTP and remain bound to GDP. A role as a
regulator of translation has been suggested. The Aquifex
aeolicus ortholog is split into consecutive open reading
frames. Consequently, this model was build in fragment
mode (-f option) [Protein synthesis, Translation
factors].
Length = 245
Score = 30.1 bits (68), Expect = 1.0
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 254 AGQLTAIMGPSGAGKSTLLNIL 275
+++ G SG GKS+L+N L
Sbjct: 119 QNRISVFAGQSGVGKSSLINAL 140
>gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 592
Score = 30.5 bits (69), Expect = 1.0
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAG 277
+L I+ + A++G +G+GKSTL ++L G
Sbjct: 354 NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMG 389
>gnl|CDD|129528 TIGR00436, era, GTP-binding protein Era. Era is an essential
GTPase in Escherichia coli and many other bacteria. It
plays a role in ribosome biogenesis. Few bacteria lack
this protein [Protein synthesis, Other].
Length = 270
Score = 30.0 bits (68), Expect = 1.1
Identities = 12/19 (63%), Positives = 13/19 (68%)
Query: 259 AIMGPSGAGKSTLLNILAG 277
AI+G GKSTLLN L G
Sbjct: 4 AILGRPNVGKSTLLNQLHG 22
>gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 246
Score = 30.0 bits (67), Expect = 1.1
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLL 272
K+ L I+ + + ++TA++G SG GKST L
Sbjct: 15 KQALFDINMQIEQNKITALIGASGCGKSTFL 45
>gnl|CDD|184375 PRK13891, PRK13891, conjugal transfer protein TrbE; Provisional.
Length = 852
Score = 30.5 bits (69), Expect = 1.1
Identities = 12/19 (63%), Positives = 15/19 (78%)
Query: 258 TAIMGPSGAGKSTLLNILA 276
T + GP+GAGKST L I+A
Sbjct: 491 TFMFGPTGAGKSTHLGIIA 509
>gnl|CDD|206726 cd04163, Era, E. coli Ras-like protein (Era) is a multifunctional
GTPase. Era (E. coli Ras-like protein) is a
multifunctional GTPase found in all bacteria except some
eubacteria. It binds to the 16S ribosomal RNA (rRNA) of
the 30S subunit and appears to play a role in the
assembly of the 30S subunit, possibly by chaperoning the
16S rRNA. It also contacts several assembly elements of
the 30S subunit. Era couples cell growth with
cytokinesis and plays a role in cell division and energy
metabolism. Homologs have also been found in eukaryotes.
Era contains two domains: the N-terminal GTPase domain
and a C-terminal domain KH domain that is critical for
RNA binding. Both domains are important for Era
function. Era is functionally able to compensate for
deletion of RbfA, a cold-shock adaptation protein that
is required for efficient processing of the 16S rRNA.
Length = 168
Score = 29.4 bits (67), Expect = 1.2
Identities = 15/26 (57%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Query: 252 FKAGQLTAIMGPSGAGKSTLLNILAG 277
FK+G + AI+G GKSTLLN L G
Sbjct: 1 FKSGFV-AIIGRPNVGKSTLLNALVG 25
>gnl|CDD|224079 COG1157, FliI, Flagellar biosynthesis/type III secretory pathway
ATPase [Cell motility and secretion / Intracellular
trafficking and secretion].
Length = 441
Score = 30.3 bits (69), Expect = 1.2
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 255 GQLTAIMGPSGAGKSTLLNILA 276
GQ I SG GKSTLL ++A
Sbjct: 163 GQRIGIFAGSGVGKSTLLGMIA 184
>gnl|CDD|237354 PRK13341, PRK13341, recombination factor protein RarA/unknown
domain fusion protein; Reviewed.
Length = 725
Score = 30.4 bits (69), Expect = 1.3
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Query: 253 KAGQLTAIM--GPSGAGKSTLLNILAGLTYLNFS 284
KA ++ +++ GP G GK+TL I+A T +FS
Sbjct: 48 KADRVGSLILYGPPGVGKTTLARIIANHTRAHFS 81
>gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision
repair protein UvrA. Nucleotide excision repair in
eubacteria is a process that repairs DNA damage by the
removal of a 12-13-mer oligonucleotide containing the
lesion. Recognition and cleavage of the damaged DNA is a
multistep ATP-dependent reaction that requires the UvrA,
UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases,
with UvrA having two ATP binding sites, which have the
characteristic signature of the family of ABC proteins,
and UvrB having one ATP binding site that is
structurally related to that of helicases.
Length = 176
Score = 29.6 bits (67), Expect = 1.3
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 245 LHGISGEFKAGQLTAIMGPSGAGKSTLLN 273
L + L + G SG+GKSTL+N
Sbjct: 11 LQNLDVSIPLNVLVVVTGVSGSGKSTLVN 39
>gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 254
Score = 30.0 bits (67), Expect = 1.3
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 245 LHGISGEFKAGQLTAIMGPSGAGKSTLLNIL 275
L+ I+ + +TA++GPSG GKST L L
Sbjct: 23 LNNINIKILKNSITALIGPSGCGKSTFLRTL 53
>gnl|CDD|217066 pfam02492, cobW, CobW/HypB/UreG, nucleotide-binding domain. This
domain is found in HypB, a hydrogenase expression /
formation protein, and UreG a urease accessory protein.
Both these proteins contain a P-loop nucleotide binding
motif. HypB has GTPase activity and is a guanine
nucleotide binding protein. It is not known whether UreG
binds GTP or some other nucleotide. Both enzymes are
involved in nickel binding. HypB can store nickel and is
required for nickel dependent hydrogenase expression.
UreG is required for functional incorporation of the
urease nickel metallocenter. GTP hydrolysis may required
by these proteins for nickel incorporation into other
nickel proteins. This family of domains also contains
P47K, a Pseudomonas chlororaphis protein needed for
nitrile hydratase expression, and the cobW gene product,
which may be involved in cobalamin biosynthesis in
Pseudomonas denitrificans.
Length = 178
Score = 29.5 bits (67), Expect = 1.3
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 258 TAIMGPSGAGKSTLLN 273
T + G G+GK+TLL
Sbjct: 3 TVLTGFLGSGKTTLLE 18
>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain. Proteins
with a small GTP-binding domain recognized by this model
include Ras, RhoA, Rab11, translation elongation factor
G, translation initiation factor IF-2, tetratcycline
resistance protein TetM, CDC42, Era, ADP-ribosylation
factors, tdhF, and many others. In some proteins the
domain occurs more than once.This model recognizes a
large number of small GTP-binding proteins and related
domains in larger proteins. Note that the alpha chains
of heterotrimeric G proteins are larger proteins in
which the NKXD motif is separated from the GxxxxGK[ST]
motif (P-loop) by a long insert and are not easily
detected by this model [Unknown function, General].
Length = 162
Score = 29.3 bits (66), Expect = 1.3
Identities = 11/19 (57%), Positives = 12/19 (63%)
Query: 259 AIMGPSGAGKSTLLNILAG 277
I+G GKSTLLN L G
Sbjct: 5 VIVGDPNVGKSTLLNRLLG 23
>gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional.
Length = 718
Score = 30.2 bits (68), Expect = 1.4
Identities = 10/19 (52%), Positives = 17/19 (89%)
Query: 259 AIMGPSGAGKSTLLNILAG 277
A++GP+G GKST+L +++G
Sbjct: 539 AMVGPNGIGKSTILKLISG 557
>gnl|CDD|129690 TIGR00602, rad24, checkpoint protein rad24. All proteins in this
family for which functions are known are involved in DNA
damage tolerance (likely cell cycle checkpoints).This
family is based on the phylogenomic analysis of JA Eisen
(1999, Ph.D. Thesis, Stanford University) [DNA
metabolism, DNA replication, recombination, and repair].
Length = 637
Score = 30.3 bits (68), Expect = 1.5
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILA 276
+ L E ++ I GPSG GKST + IL+
Sbjct: 97 ETWLKAQVLENAPKRILLITGPSGCGKSTTIKILS 131
>gnl|CDD|169656 PRK09099, PRK09099, type III secretion system ATPase; Provisional.
Length = 441
Score = 30.1 bits (68), Expect = 1.5
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 255 GQLTAIMGPSGAGKSTLLNILA 276
GQ I P+G GKSTL+ + A
Sbjct: 163 GQRMGIFAPAGVGKSTLMGMFA 184
>gnl|CDD|223603 COG0529, CysC, Adenylylsulfate kinase and related kinases
[Inorganic ion transport and metabolism].
Length = 197
Score = 29.6 bits (67), Expect = 1.5
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 262 GPSGAGKSTLLNILA 276
G SG+GKST+ N L
Sbjct: 30 GLSGSGKSTIANALE 44
>gnl|CDD|163293 TIGR03498, FliI_clade3, flagellar protein export ATPase FliI.
Members of this protein family are the FliI protein of
bacterial flagellum systems. This protein acts to drive
protein export for flagellar biosynthesis. The most
closely related family is the YscN family of bacterial
type III secretion systems. This model represents one
(of three) segment of the FliI family tree. These have
been modeled separately in order to exclude the type III
secretion ATPases more effectively.
Length = 418
Score = 30.0 bits (68), Expect = 1.5
Identities = 13/23 (56%), Positives = 15/23 (65%)
Query: 255 GQLTAIMGPSGAGKSTLLNILAG 277
GQ I SG GKSTLL++LA
Sbjct: 140 GQRLGIFAGSGVGKSTLLSMLAR 162
>gnl|CDD|223571 COG0497, RecN, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 557
Score = 29.9 bits (68), Expect = 1.6
Identities = 11/22 (50%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Query: 251 EFKAGQLTAIMGPSGAGKSTLL 272
EF+ G LT + G +GAGKS ++
Sbjct: 19 EFEKG-LTVLTGETGAGKSIII 39
>gnl|CDD|222104 pfam13401, AAA_22, AAA domain.
Length = 124
Score = 28.8 bits (65), Expect = 1.6
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 256 QLTAIMGPSGAGKSTLLNILA 276
+ + G SG+GK+TLL LA
Sbjct: 5 GIGVLTGESGSGKTTLLRRLA 25
>gnl|CDD|234175 TIGR03348, VI_IcmF, type VI secretion protein IcmF. Members of
this protein family are IcmF homologs and tend to be
associated with type VI secretion systems [Cellular
processes, Pathogenesis].
Length = 1169
Score = 30.0 bits (68), Expect = 1.6
Identities = 8/14 (57%), Positives = 12/14 (85%)
Query: 260 IMGPSGAGKSTLLN 273
++GP G+GK+TLL
Sbjct: 116 VIGPPGSGKTTLLQ 129
>gnl|CDD|234770 PRK00454, engB, GTP-binding protein YsxC; Reviewed.
Length = 196
Score = 29.3 bits (67), Expect = 1.7
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 259 AIMGPSGAGKSTLLNILAG 277
A G S GKS+L+N L
Sbjct: 28 AFAGRSNVGKSSLINALTN 46
>gnl|CDD|225713 COG3172, NadR, Predicted ATPase/kinase involved in NAD metabolism
[Coenzyme metabolism].
Length = 187
Score = 29.3 bits (66), Expect = 1.7
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 259 AIMGPSGAGKSTLLNILA 276
AI+G +GKSTL+N LA
Sbjct: 12 AILGGESSGKSTLVNKLA 29
>gnl|CDD|227519 COG5192, BMS1, GTP-binding protein required for 40S ribosome
biogenesis [Translation, ribosomal structure and
biogenesis].
Length = 1077
Score = 30.1 bits (67), Expect = 1.7
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 257 LTAIMGPSGAGKSTLLNIL 275
+ A++GP G GKSTL+ L
Sbjct: 71 IVAVVGPPGTGKSTLIRSL 89
>gnl|CDD|218791 pfam05879, RHD3, Root hair defective 3 GTP-binding protein (RHD3).
This family consists of several eukaryotic root hair
defective 3 like GTP-binding proteins. It has been
speculated that the RHD3 protein is a member of a novel
class of GTP-binding proteins that is widespread in
eukaryotes and required for regulated cell enlargement.
The family also contains the homologous yeast synthetic
enhancement of YOP1 (SEY1) protein which is involved in
membrane trafficking.
Length = 743
Score = 30.1 bits (68), Expect = 1.7
Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 3/24 (12%)
Query: 261 MGPSGAGKSTLLNILAGLTYLNFS 284
G GKSTLLN L G NFS
Sbjct: 1 FGSQSTGKSTLLNHLFG---TNFS 21
>gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 29.6 bits (66), Expect = 1.7
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 255 GQLTAIMGPSGAGKSTLLNIL 275
++T +GPSG GKST+L L
Sbjct: 34 NEITGFIGPSGCGKSTVLRSL 54
>gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD.
This family represents the NikD subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase.
NikD and NikE are homologous [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 230
Score = 29.3 bits (66), Expect = 1.7
Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
Query: 246 HGISGEFKAGQLTAIMGPSGAGKST----LLNILA 276
++ K G++ A++G SG+GKS +L +L
Sbjct: 3 QDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLP 37
>gnl|CDD|236546 PRK09518, PRK09518, bifunctional cytidylate kinase/GTPase Der;
Reviewed.
Length = 712
Score = 29.8 bits (67), Expect = 1.8
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 255 GQLTAIMGPSGAGKSTLLNILAGLTYLNFS 284
+ AI GP+G GKS++ LA YL ++
Sbjct: 1 MIIVAIDGPAGVGKSSVSRALA--QYLGYA 28
>gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 195
Score = 29.1 bits (65), Expect = 1.8
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 234 HNPADFLNKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
H + ++ L +S F +T I G +G GKS+LL ++AG+
Sbjct: 5 HQLQFNIEQKNLFDLSITFLPSAITYIKGANGCGKSSLLRMIAGI 49
>gnl|CDD|215920 pfam00437, T2SE, Type II/IV secretion system protein. This family
contains both type II and type IV pathway secretion
proteins from bacteria. VirB11 ATPase is a subunit of
the Agrobacterium tumefaciens transfer DNA (T-DNA)
transfer system, a type IV secretion pathway required
for delivery of T-DNA and effector proteins to plant
cells during infection.
Length = 273
Score = 29.5 bits (67), Expect = 1.8
Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
Query: 260 IMGPSGAGKSTLLNILAGLTYLN 282
+ G +G+GK+TLL A L +N
Sbjct: 134 VSGGTGSGKTTLLY--ALLNEIN 154
>gnl|CDD|213245 cd03278, ABC_SMC_barmotin, ATP-binding cassette domain of barmotin,
a member of the SMC protein family. Barmotin is a tight
junction-associated protein expressed in rat epithelial
cells which is thought to have an important regulatory
role in tight junction barrier function. Barmotin
belongs to the SMC protein family. SMC proteins are
large (approximately 110 to 170 kDa), and each is
arranged into five recognizable domains. Amino-acid
sequence homology of SMC proteins between species is
largely confined to the amino- and carboxy-terminal
globular domains. The amino-terminal domain contains a
'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the
single-letter amino-acid code), which by mutational
studies has been shown to be essential in several
proteins. The carboxy-terminal domain contains a
sequence (the DA-box) that resembles a 'Walker B' motif,
and a motif with homology to the signature sequence of
the ATP-binding cassette (ABC) family of ATPases. The
sequence homology within the carboxy-terminal domain is
relatively high within the SMC1-SMC4 group, whereas SMC5
and SMC6 show some divergence in both of these
sequences. In eukaryotic cells, the proteins are found
as heterodimers of SMC1 paired with SMC3, SMC2 with
SMC4, and SMC5 with SMC6 (formerly known as Rad18).
Length = 197
Score = 29.4 bits (67), Expect = 1.8
Identities = 14/25 (56%), Positives = 18/25 (72%), Gaps = 4/25 (16%)
Query: 251 EFKAGQLTAIMGPSGAGKSTLLNIL 275
F G LTAI+GP+G+GKS NI+
Sbjct: 19 PFPPG-LTAIVGPNGSGKS---NII 39
>gnl|CDD|224617 COG1703, ArgK, Putative periplasmic protein kinase ArgK and related
GTPases of G3E family [Amino acid transport and
metabolism].
Length = 323
Score = 29.6 bits (67), Expect = 1.9
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNIL 275
+E+L + + I G GAGKSTL+ L
Sbjct: 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEAL 71
>gnl|CDD|233448 TIGR01526, nadR_NMN_Atrans, nicotinamide-nucleotide
adenylyltransferase, NadR type. The NadR protein of E.
coli and closely related bacteria is both enzyme and
regulatory protein. The first 60 or so amino acids,
N-terminal to the region covered by this model, is a
DNA-binding helix-turn-helix domain (pfam01381)
responsible for repressing the nadAB genes of NAD de
novo biosynthesis. The NadR homologs in Mycobacterium
tuberculosis, Haemophilus influenzae, and others appear
to lack the repressor domain. NadR has recently been
shown to act as an enzyme of the salvage pathway of NAD
biosynthesis, nicotinamide-nucleotide
adenylyltransferase; members of this family are presumed
to share this activity. E. coli NadR has also been found
to regulate the import of its substrate, nicotinamide
ribonucleotide, but it is not known if the other members
of this model share that activity.
Length = 325
Score = 29.4 bits (66), Expect = 1.9
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 259 AIMGPSGAGKSTLLNILA 276
AI+G GKSTL+N LA
Sbjct: 166 AILGGESTGKSTLVNKLA 183
>gnl|CDD|213208 cd03241, ABC_RecN, ATP-binding cassette domain of RecN. RecN
ATPase involved in DNA repair; similar to ABC
(ATP-binding cassette) transporter nucleotide-binding
domain; ABC transporters are a large family of proteins
involved in the transport of a wide variety of different
compounds including sugars, ions, peptides, and more
complex organic molecules. The nucleotide binding domain
shows the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 276
Score = 29.5 bits (67), Expect = 1.9
Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Query: 251 EFKAGQLTAIMGPSGAGKSTLL 272
+F+ G LT + G +GAGKS LL
Sbjct: 18 DFEEG-LTVLTGETGAGKSILL 38
>gnl|CDD|235450 PRK05416, PRK05416, glmZ(sRNA)-inactivating NTPase; Provisional.
Length = 288
Score = 29.3 bits (67), Expect = 2.0
Identities = 9/16 (56%), Positives = 10/16 (62%)
Query: 260 IMGPSGAGKSTLLNIL 275
+ G SGAGKS L L
Sbjct: 11 VTGLSGAGKSVALRAL 26
>gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 274
Score = 29.6 bits (66), Expect = 2.0
Identities = 11/17 (64%), Positives = 14/17 (82%)
Query: 256 QLTAIMGPSGAGKSTLL 272
++ A +GPSG GKSTLL
Sbjct: 47 KIIAFIGPSGCGKSTLL 63
>gnl|CDD|226459 COG3950, COG3950, Predicted ATP-binding protein involved in
virulence [General function prediction only].
Length = 440
Score = 29.5 bits (66), Expect = 2.0
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 6/37 (16%)
Query: 239 FLNKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNIL 275
FLN +I F + T I+GP+G+GK+T+L+ +
Sbjct: 14 FLNLDI------TFGESETTIIVGPNGSGKTTVLDAI 44
>gnl|CDD|224410 COG1493, HprK, Serine kinase of the HPr protein, regulates
carbohydrate metabolism [Signal transduction
mechanisms].
Length = 308
Score = 29.5 bits (67), Expect = 2.0
Identities = 10/12 (83%), Positives = 10/12 (83%)
Query: 260 IMGPSGAGKSTL 271
I GPSGAGKS L
Sbjct: 150 ITGPSGAGKSEL 161
>gnl|CDD|206733 cd04170, EF-G_bact, Elongation factor G (EF-G) family.
Translocation is mediated by EF-G (also called
translocase). The structure of EF-G closely resembles
that of the complex between EF-Tu and tRNA. This is an
example of molecular mimicry; a protein domain evolved
so that it mimics the shape of a tRNA molecule. EF-G in
the GTP form binds to the ribosome, primarily through
the interaction of its EF-Tu-like domain with the 50S
subunit. The binding of EF-G to the ribosome in this
manner stimulates the GTPase activity of EF-G. On GTP
hydrolysis, EF-G undergoes a conformational change that
forces its arm deeper into the A site on the 30S
subunit. To accommodate this domain, the peptidyl-tRNA
in the A site moves to the P site, carrying the mRNA and
the deacylated tRNA with it. The ribosome may be
prepared for these rearrangements by the initial binding
of EF-G as well. The dissociation of EF-G leaves the
ribosome ready to accept the next aminoacyl-tRNA into
the A site. This group contains only bacterial members.
Length = 268
Score = 29.1 bits (66), Expect = 2.1
Identities = 8/14 (57%), Positives = 12/14 (85%)
Query: 259 AIMGPSGAGKSTLL 272
A++G SG+GK+TL
Sbjct: 3 ALVGHSGSGKTTLA 16
>gnl|CDD|225171 COG2262, HflX, GTPases [General function prediction only].
Length = 411
Score = 29.5 bits (67), Expect = 2.1
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 259 AIMGPSGAGKSTLLNILAGLTYL 281
A++G + AGKSTL N L G
Sbjct: 196 ALVGYTNAGKSTLFNALTGADVY 218
>gnl|CDD|180911 PRK07261, PRK07261, topology modulation protein; Provisional.
Length = 171
Score = 28.9 bits (65), Expect = 2.1
Identities = 11/17 (64%), Positives = 13/17 (76%)
Query: 259 AIMGPSGAGKSTLLNIL 275
AI+G SG+GKSTL L
Sbjct: 4 AIIGYSGSGKSTLARKL 20
>gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 289
Score = 29.2 bits (65), Expect = 2.1
Identities = 13/34 (38%), Positives = 23/34 (67%)
Query: 245 LHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
L+ S FK ++T ++G +G+GKST++ + GL
Sbjct: 27 LNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGL 60
>gnl|CDD|224345 COG1428, COG1428, Deoxynucleoside kinases [Nucleotide transport and
metabolism].
Length = 216
Score = 29.2 bits (66), Expect = 2.2
Identities = 11/18 (61%), Positives = 11/18 (61%)
Query: 259 AIMGPSGAGKSTLLNILA 276
I G GAGKSTL LA
Sbjct: 8 VIEGMIGAGKSTLAQALA 25
>gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane
component/ATP-binding component; Provisional.
Length = 547
Score = 29.6 bits (67), Expect = 2.2
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 251 EFKAGQLTAIMGPSGAGKSTLLNILAGL 278
K G+L ++G +G+GKSTL +L GL
Sbjct: 345 TIKRGELLFLIGGNGSGKSTLAMLLTGL 372
>gnl|CDD|227274 COG4938, COG4938, Uncharacterized conserved protein [Function
unknown].
Length = 374
Score = 29.5 bits (66), Expect = 2.3
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Query: 248 ISGEFKAGQLTAIMGPSGAGKST----LLNILAGLT 279
I+G+ LT +GP+ +GKST L I +GLT
Sbjct: 14 INGKIILKPLTVFIGPNSSGKSTTIQSLYLIYSGLT 49
>gnl|CDD|213242 cd03275, ABC_SMC1_euk, ATP-binding cassette domain of eukaryotic
SMC1 proteins. The structural maintenance of
chromosomes (SMC) proteins are large (approximately 110
to 170 kDa), and each is arranged into five recognizable
domains. Amino-acid sequence homology of SMC proteins
between species is largely confined to the amino- and
carboxy-terminal globular domains. The amino-terminal
domain contains a 'Walker A' nucleotide-binding domain
(GxxGxGKS/T, in the single-letter amino-acid code),
which by mutational studies has been shown to be
essential in several proteins. The carboxy-terminal
domain contains a sequence (the DA-box) that resembles a
'Walker B' motif, and a motif with homology to the
signature sequence of the ATP-binding cassette (ABC)
family of ATPases. The sequence homology within the
carboxy-terminal domain is relatively high within the
SMC1-SMC4 group, whereas SMC5 and SMC6 show some
divergence in both of these sequences. In eukaryotic
cells, the proteins are found as heterodimers of SMC1
paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6
(formerly known as Rad18).
Length = 247
Score = 29.1 bits (66), Expect = 2.4
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Query: 246 HGISGEFKAGQLTAIMGPSGAGKSTLL 272
+ G F + T I+GP+G+GKS L+
Sbjct: 15 RHVIGPFD--RFTCIIGPNGSGKSNLM 39
>gnl|CDD|222258 pfam13604, AAA_30, AAA domain. This family of domains contain a
P-loop motif that is characteristic of the AAA
superfamily. Many of the proteins in this family are
conjugative transfer proteins. There is a Walker A and
Walker B.
Length = 195
Score = 28.7 bits (65), Expect = 2.5
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 255 GQLTAIMGPSGAGKSTLLNILA 276
++ + GP+G GK+T L
Sbjct: 18 DRVAVVQGPAGTGKTTSLKAAR 39
>gnl|CDD|237480 PRK13721, PRK13721, conjugal transfer ATP-binding protein TraC;
Provisional.
Length = 844
Score = 29.3 bits (66), Expect = 2.6
Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 14/55 (25%)
Query: 223 LASLGLPCPAYHNPADFLNKEILHGISGEFKAGQLT-----AIMGPSGAGKSTLL 272
L GL P Y N F++ F G A+ G SGAGK+ L+
Sbjct: 421 LTPAGLLAPTYRNQLAFIDI---------FFRGMNNTNYNMAVCGTSGAGKTGLI 466
>gnl|CDD|238542 cd01122, GP4d_helicase, GP4d_helicase is a homohexameric 5'-3'
helicases. Helicases couple NTP hydrolysis to the
unwinding of nucleic acid duplexes into their component
strands.
Length = 271
Score = 28.9 bits (65), Expect = 2.6
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 5/37 (13%)
Query: 236 PADFLNKEILHGISGEFKAGQLTAIMGPSGAGKSTLL 272
P LNK + G+ G+L + +G GK+T L
Sbjct: 16 PFPVLNK-LTKGLRK----GELIILTAGTGVGKTTFL 47
>gnl|CDD|206665 cd01876, YihA_EngB, YihA (EngB) GTPase family. The YihA (EngB)
subfamily of GTPases is typified by the E. coli YihA, an
essential protein involved in cell division control.
YihA and its orthologs are small proteins that typically
contain less than 200 amino acid residues and consists
of the GTPase domain only (some of the eukaryotic
homologs contain an N-terminal extension of about 120
residues that might be involved in organellar
targeting). Homologs of yihA are found in most
Gram-positive and Gram-negative pathogenic bacteria,
with the exception of Mycobacterium tuberculosis. The
broad-spectrum nature of YihA and its essentiality for
cell viability in bacteria make it an attractive
antibacterial target.
Length = 170
Score = 28.6 bits (65), Expect = 2.8
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 259 AIMGPSGAGKSTLLNILAG 277
A G S GKS+L+N L
Sbjct: 3 AFAGRSNVGKSSLINALTN 21
>gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein;
Provisional.
Length = 272
Score = 28.7 bits (64), Expect = 2.9
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 245 LHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYL 281
L S G + A++G +G+GKSTL L G L
Sbjct: 23 LRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRL 59
>gnl|CDD|180975 PRK07429, PRK07429, phosphoribulokinase; Provisional.
Length = 327
Score = 28.8 bits (65), Expect = 2.9
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 257 LTAIMGPSGAGKSTLLNILAGL 278
L + G SG GK+T L LA L
Sbjct: 10 LLGVAGDSGCGKTTFLRGLADL 31
>gnl|CDD|206649 cd01850, CDC_Septin, CDC/Septin GTPase family. Septins are a
conserved family of GTP-binding proteins associated with
diverse processes in dividing and non-dividing cells.
They were first discovered in the budding yeast S.
cerevisiae as a set of genes (CDC3, CDC10, CDC11 and
CDC12) required for normal bud morphology. Septins are
also present in metazoan cells, where they are required
for cytokinesis in some systems, and implicated in a
variety of other processes involving organization of the
cell cortex and exocytosis. In humans, 12 septin genes
generate dozens of polypeptides, many of which comprise
heterooligomeric complexes. Since septin mutants are
commonly defective in cytokinesis and formation of the
neck formation of the neck filaments/septin rings,
septins have been considered to be the primary
constituents of the neck filaments. Septins belong to
the GTPase superfamily for their conserved GTPase motifs
and enzymatic activities.
Length = 275
Score = 28.7 bits (65), Expect = 2.9
Identities = 11/18 (61%), Positives = 12/18 (66%), Gaps = 2/18 (11%)
Query: 260 IM--GPSGAGKSTLLNIL 275
IM G SG GKST +N L
Sbjct: 7 IMVVGESGLGKSTFINTL 24
>gnl|CDD|236570 PRK09563, rbgA, GTPase YlqF; Reviewed.
Length = 287
Score = 29.0 bits (66), Expect = 2.9
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 258 TAIMGPSGAGKSTLLNILAG 277
I+G GKSTL+N LAG
Sbjct: 124 AMIIGIPNVGKSTLINRLAG 143
>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein
YejF; Provisional.
Length = 529
Score = 29.3 bits (66), Expect = 3.0
Identities = 14/35 (40%), Positives = 26/35 (74%), Gaps = 1/35 (2%)
Query: 242 KEILHGISGEFKAGQLTAIMGPSGAGKS-TLLNIL 275
+ +++ +S + +AG+ A++G SG+GKS T L+IL
Sbjct: 22 RTVVNDVSLQIEAGETLALVGESGSGKSVTALSIL 56
>gnl|CDD|213835 TIGR03598, GTPase_YsxC, ribosome biogenesis GTP-binding protein
YsxC/EngB. Members of this protein family are a GTPase
associated with ribosome biogenesis, typified by YsxC
from Bacillus subutilis. The family is widely but not
universally distributed among bacteria. Members commonly
are called EngB based on homology to EngA, one of
several other GTPases of ribosome biogenesis. Cutoffs as
set find essentially all bacterial members, but also
identify large numbers of eukaryotic (probably
organellar) sequences. This protein is found in about 80
percent of bacterial genomes [Protein synthesis, Other].
Length = 178
Score = 28.2 bits (64), Expect = 3.2
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 259 AIMGPSGAGKSTLLNILAG 277
A G S GKS+L+N L
Sbjct: 22 AFAGRSNVGKSSLINALTN 40
>gnl|CDD|151168 pfam10662, PduV-EutP, Ethanolamine utilisation - propanediol
utilisation. Members of this family function in
ethanolamine and propanediol degradation pathways,
however the exact roles of these proteins is poorly
understood.
Length = 143
Score = 28.0 bits (63), Expect = 3.2
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 261 MGPSGAGKSTLLNILAGL 278
+G SG GK+TL L G
Sbjct: 7 IGRSGCGKTTLTQALNGE 24
>gnl|CDD|236351 PRK08927, fliI, flagellum-specific ATP synthase; Validated.
Length = 442
Score = 28.8 bits (65), Expect = 3.3
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 255 GQLTAIMGPSGAGKSTLLNILA 276
GQ I SG GKS LL++LA
Sbjct: 158 GQRMGIFAGSGVGKSVLLSMLA 179
>gnl|CDD|206666 cd01878, HflX, HflX GTPase family. HflX subfamily. A distinct
conserved domain with a glycine-rich segment N-terminal
of the GTPase domain characterizes the HflX subfamily.
The E. coli HflX has been implicated in the control of
the lambda cII repressor proteolysis, but the actual
biological functions of these GTPases remain unclear.
HflX is widespread, but not universally represented in
all three superkingdoms.
Length = 204
Score = 28.6 bits (65), Expect = 3.3
Identities = 9/12 (75%), Positives = 9/12 (75%)
Query: 266 AGKSTLLNILAG 277
AGKSTL N L G
Sbjct: 52 AGKSTLFNALTG 63
>gnl|CDD|234340 TIGR03744, traC_PFL_4706, conjugative transfer ATPase, PFL_4706
family. Members of this protein family are predicted
ATP-binding proteins apparently associated with DNA
conjugal transfer. Members are found both in plasmids
and in bacterial chromosomal regions that appear to
derive from integrative elements such as conjugative
transposons. More distant homologs, outside the scope of
this family, include type IV secretion/conjugal transfer
proteins such as TraC, VirB4 and TrsE. The granularity
of this protein family definition is chosen so as to
represent one distinctive clade and act as a marker
through which to define and recognize the class of
mobile element it serves [Mobile and extrachromosomal
element functions, Plasmid functions].
Length = 893
Score = 29.2 bits (66), Expect = 3.3
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 260 IMGPSGAGKSTLLNILAG 277
I+GP+GAGKS L L
Sbjct: 480 ILGPTGAGKSATLTNLLM 497
>gnl|CDD|223203 COG0125, Tmk, Thymidylate kinase [Nucleotide transport and
metabolism].
Length = 208
Score = 28.4 bits (64), Expect = 3.4
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 255 GQLTAIMGPSGAGKSTLLNILA 276
G I G GAGK+T +L
Sbjct: 3 GMFIVIEGIDGAGKTTQAELLK 24
>gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the
sulfonylurea receptor, subfamily C. The SUR domain 1.
The sulfonylurea receptor SUR is an ATP transporter of
the ABCC/MRP family with tandem ATPase binding domains.
Unlike other ABC proteins, it has no intrinsic transport
function, neither active nor passive, but associates
with the potassium channel proteins Kir6.1 or Kir6.2 to
form the ATP-sensitive potassium (K(ATP)) channel.
Within the channel complex, SUR serves as a regulatory
subunit that fine-tunes the gating of Kir6.x in response
to alterations in cellular metabolism. It constitutes a
major pharmaceutical target as it binds numerous drugs,
K(ATP) channel openers and blockers, capable of up- or
down-regulating channel activity.
Length = 218
Score = 28.5 bits (63), Expect = 3.5
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 245 LHGISGEFKAGQLTAIMGPSGAGKSTLL 272
L I+ GQLT I+G G GKS+LL
Sbjct: 17 LSNINIRIPTGQLTMIVGQVGCGKSSLL 44
>gnl|CDD|206748 cd01855, YqeH, Circularly permuted YqeH GTPase. YqeH is an
essential GTP-binding protein. Depletion of YqeH induces
an excess initiation of DNA replication, suggesting that
it negatively controls initiation of chromosome
replication. The YqeH subfamily is common in eukaryotes
and sporadically present in bacteria with probable
acquisition by plants from chloroplasts. Proteins of the
YqeH family contain all sequence motifs typical of the
vast class of P-loop-containing GTPases, but show a
circular permutation, with a G4-G1-G3 pattern of motifs
as opposed to the regular G1-G3-G4 pattern seen in most
GTPases.
Length = 191
Score = 28.4 bits (64), Expect = 3.6
Identities = 11/42 (26%), Positives = 18/42 (42%)
Query: 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLNF 283
+E++ I K ++G + GKSTL+N L
Sbjct: 112 EELIEEIKKLAKYRGDVYVVGATNVGKSTLINALLKSNGGKV 153
>gnl|CDD|223544 COG0468, RecA, RecA/RadA recombinase [DNA replication,
recombination, and repair].
Length = 279
Score = 28.4 bits (64), Expect = 3.6
Identities = 12/40 (30%), Positives = 17/40 (42%)
Query: 247 GISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLNFSKC 286
+ G G++T I GP +GK+TL L K
Sbjct: 52 ALGGGLPRGRITEIYGPESSGKTTLALQLVANAQKPGGKA 91
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common
bacterial type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. This family
represents the SMC protein of most bacteria. The smc
gene is often associated with scpB (TIGR00281) and scpA
genes, where scp stands for segregation and condensation
protein. SMC was shown (in Caulobacter crescentus) to be
induced early in S phase but present and bound to DNA
throughout the cell cycle [Cellular processes, Cell
division, DNA metabolism, Chromosome-associated
proteins].
Length = 1179
Score = 28.9 bits (65), Expect = 3.6
Identities = 10/21 (47%), Positives = 14/21 (66%), Gaps = 3/21 (14%)
Query: 255 GQLTAIMGPSGAGKSTLLNIL 275
+T I+GP+G GKS NI+
Sbjct: 23 KGITGIVGPNGCGKS---NIV 40
>gnl|CDD|129833 TIGR00750, lao, LAO/AO transport system ATPase. In E. coli,
mutation of this kinase blocks phosphorylation of two
transporter system periplasmic binding proteins and
consequently inhibits those transporters. This kinase is
also found in Gram-positive bacteria, archaea, and the
roundworm C. elegans. It may have a more general, but
still unknown function. Mutations have also been found
that do not phosphorylate the periplasmic binding
proteins, yet still allow transport. The ATPase activity
of this protein seems to be necessary, however
[Transport and binding proteins, Amino acids, peptides
and amines, Regulatory functions, Protein interactions].
Length = 300
Score = 28.6 bits (64), Expect = 3.7
Identities = 15/34 (44%), Positives = 16/34 (47%)
Query: 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNIL 275
KE+L I I G GAGKSTLL L
Sbjct: 21 KELLDRIMPYTGNAHRVGITGTPGAGKSTLLEAL 54
>gnl|CDD|224930 COG2019, AdkA, Archaeal adenylate kinase [Nucleotide transport and
metabolism].
Length = 189
Score = 28.1 bits (63), Expect = 3.7
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 4/30 (13%)
Query: 259 AIMGPSGAGKSTLLNI----LAGLTYLNFS 284
I G G GK+T+L I L +N+
Sbjct: 8 VITGVPGVGKTTVLKIALKELVKHKIVNYG 37
>gnl|CDD|222878 PHA02562, 46, endonuclease subunit; Provisional.
Length = 562
Score = 28.8 bits (65), Expect = 3.7
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Query: 251 EFKAGQLTAIMGPSGAGKSTLLNILAGLTYLNFSK 285
+ + T I G +GAGKST +L LT+ F K
Sbjct: 23 QLDKVKKTLITGKNGAGKST---MLEALTFALFGK 54
>gnl|CDD|235244 PRK04182, PRK04182, cytidylate kinase; Provisional.
Length = 180
Score = 28.2 bits (64), Expect = 3.7
Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 3/27 (11%)
Query: 259 AIMGPSGAGKSTLLNILA---GLTYLN 282
I GP G+GK+T+ +LA GL +++
Sbjct: 4 TISGPPGSGKTTVARLLAEKLGLKHVS 30
>gnl|CDD|206691 cd04105, SR_beta, Signal recognition particle receptor, beta
subunit (SR-beta), together with SR-alpha, forms the
heterodimeric signal recognition particle (SRP). Signal
recognition particle receptor, beta subunit (SR-beta).
SR-beta and SR-alpha form the heterodimeric signal
recognition particle (SRP or SR) receptor that binds SRP
to regulate protein translocation across the ER
membrane. Nascent polypeptide chains are synthesized
with an N-terminal hydrophobic signal sequence that
binds SRP54, a component of the SRP. SRP directs
targeting of the ribosome-nascent chain complex (RNC) to
the ER membrane via interaction with the SR, which is
localized to the ER membrane. The RNC is then
transferred to the protein-conducting channel, or
translocon, which facilitates polypeptide translation
across the ER membrane or integration into the ER
membrane. SR-beta is found only in eukaryotes; it is
believed to control the release of the signal sequence
from SRP54 upon binding of the ribosome to the
translocon. High expression of SR-beta has been observed
in human colon cancer, suggesting it may play a role in
the development of this type of cancer.
Length = 202
Score = 28.4 bits (64), Expect = 3.8
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 260 IMGPSGAGKSTLLNILAGLTY 280
++GPS +GK+ L L
Sbjct: 5 LLGPSDSGKTALFTKLTTGKV 25
>gnl|CDD|225165 COG2256, MGS1, ATPase related to the helicase subunit of the
Holliday junction resolvase [DNA replication,
recombination, and repair].
Length = 436
Score = 28.7 bits (65), Expect = 3.9
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 253 KAGQLT-AIM-GPSGAGKSTLLNILAGLTYLNF 283
+AG L I+ GP G GK+TL ++AG T F
Sbjct: 44 EAGHLHSMILWGPPGTGKTTLARLIAGTTNAAF 76
>gnl|CDD|213210 cd03243, ABC_MutS_homologs, ATP-binding cassette domain of MutS
homologs. The MutS protein initiates DNA mismatch
repair by recognizing mispaired and unpaired bases
embedded in duplex DNA and activating endo- and
exonucleases to remove the mismatch. Members of the MutS
family also possess a conserved ATPase activity that
belongs to the ATP binding cassette (ABC) superfamily.
MutS homologs (MSH) have been identified in most
prokaryotic and all eukaryotic organisms examined.
Prokaryotes have two homologs (MutS1 and MutS2), whereas
seven MSH proteins (MSH1 to MSH7) have been identified
in eukaryotes. The homodimer MutS1 and heterodimers
MSH2-MSH3 and MSH2-MSH6 are primarily involved in
mitotic mismatch repair, whereas MSH4-MSH5 is involved
in resolution of Holliday junctions during meiosis. All
members of the MutS family contain the highly conserved
Walker A/B ATPase domain, and many share a common
mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and
MSH4-MSH5 dimerize to form sliding clamps, and
recognition of specific DNA structures or lesions
results in ADP/ATP exchange.
Length = 202
Score = 28.4 bits (64), Expect = 3.9
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 251 EFKAGQLTAIMGPSGAGKSTLLNILAGLTYL 281
+G+L I GP+ GKST L + L
Sbjct: 25 NLGSGRLLLITGPNMGGKSTYLRSIGLAVLL 55
>gnl|CDD|233918 TIGR02546, III_secr_ATP, type III secretion apparatus
H+-transporting two-sector ATPase. [Protein fate,
Protein and peptide secretion and trafficking, Cellular
processes, Pathogenesis].
Length = 422
Score = 28.8 bits (65), Expect = 3.9
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 255 GQLTAIMGPSGAGKSTLLNILA 276
GQ I +G GKSTLL ++A
Sbjct: 145 GQRIGIFAGAGVGKSTLLGMIA 166
>gnl|CDD|217429 pfam03215, Rad17, Rad17 cell cycle checkpoint protein.
Length = 490
Score = 28.9 bits (64), Expect = 4.1
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILA 276
L + E + + GPSG GKST + +L+
Sbjct: 32 DHWLKAVFLESNKQLILLLTGPSGCGKSTTVKVLS 66
>gnl|CDD|224160 COG1239, ChlI, Mg-chelatase subunit ChlI [Coenzyme metabolism].
Length = 423
Score = 28.5 bits (64), Expect = 4.1
Identities = 10/19 (52%), Positives = 10/19 (52%)
Query: 260 IMGPSGAGKSTLLNILAGL 278
I G G KSTL LA L
Sbjct: 43 IAGEKGTAKSTLARALADL 61
>gnl|CDD|234814 PRK00698, tmk, thymidylate kinase; Validated.
Length = 205
Score = 28.2 bits (64), Expect = 4.1
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 255 GQLTAIMGPSGAGKSTLLNILA 276
G I G GAGKST + +L
Sbjct: 3 GMFITIEGIDGAGKSTQIELLK 24
>gnl|CDD|215399 PLN02748, PLN02748, tRNA dimethylallyltransferase.
Length = 468
Score = 28.7 bits (64), Expect = 4.2
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 253 KAGQLTAIMGPSGAGKSTL 271
++ +MGP+G+GKS L
Sbjct: 20 GKAKVVVVMGPTGSGKSKL 38
>gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC, RecA-like,
VirD4-like, PilT-like, and SF1/2 helicases. Members of
the AAA+ ATPases function as molecular chaperons, ATPase
subunits of proteases, helicases, or nucleic-acid
stimulated ATPases. The AAA+ proteins contain several
distinct features in addition to the conserved
alpha-beta-alpha core domain structure and the Walker A
and B motifs of the P-loop NTPases.
Length = 151
Score = 27.9 bits (62), Expect = 4.3
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 260 IMGPSGAGKSTLLNILA 276
+ GP G GK+TL +A
Sbjct: 24 LYGPPGTGKTTLARAIA 40
>gnl|CDD|237802 PRK14723, flhF, flagellar biosynthesis regulator FlhF; Provisional.
Length = 767
Score = 28.6 bits (64), Expect = 4.3
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 252 FKAGQLTAIMGPSGAGKSTLLNILA 276
G + A++GP+G GK+T LA
Sbjct: 182 LAQGGVLALVGPTGVGKTTTTAKLA 206
>gnl|CDD|181092 PRK07721, fliI, flagellum-specific ATP synthase; Validated.
Length = 438
Score = 28.5 bits (64), Expect = 4.3
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 255 GQLTAIMGPSGAGKSTLLNILA 276
GQ I SG GKSTL+ ++A
Sbjct: 158 GQRVGIFAGSGVGKSTLMGMIA 179
>gnl|CDD|225913 COG3378, COG3378, Phage associated DNA primase [General function
prediction only].
Length = 517
Score = 28.6 bits (64), Expect = 4.4
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Query: 244 ILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
L G E K L GP G GKST +++++ L
Sbjct: 222 SLTGRVSEQKLFWLY---GPGGNGKSTFVDLISNL 253
>gnl|CDD|224031 COG1106, COG1106, Predicted ATPases [General function prediction
only].
Length = 371
Score = 28.6 bits (64), Expect = 4.4
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 255 GQLTAIMGPSGAGKSTLLNILAGLTYL 281
G++ I G +GAGKS LL L L L
Sbjct: 22 GKINIIYGANGAGKSNLLEALYFLKGL 48
>gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter. This model
describes cyclic peptide transporter in bacteria.
Bacteria have elaborate pathways for the production of
toxins and secondary metabolites. Many such compounds,
including syringomycin and pyoverdine are synthesized on
non-ribosomal templates consisting of a multienzyme
complex. On several occasions the proteins of the
complex and transporter protein are present on the same
operon. Often times these compounds cross the biological
membrane by specific transporters. Syringomycin is an
amphipathic, cylclic lipodepsipeptide when inserted into
host causes formation of channels, permeable to variety
of cations. On the other hand, pyoverdine is a cyclic
octa-peptidyl dihydroxyquinoline, which is efficient in
sequestering iron for uptake [Transport and binding
proteins, Amino acids, peptides and amines, Transport
and binding proteins, Other].
Length = 555
Score = 28.8 bits (64), Expect = 4.4
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 254 AGQLTAIMGPSGAGKSTLLNILAGL 278
G + I+G +G GKSTL + GL
Sbjct: 367 QGDIVFIVGENGCGKSTLAKLFCGL 391
>gnl|CDD|226124 COG3596, COG3596, Predicted GTPase [General function prediction
only].
Length = 296
Score = 28.2 bits (63), Expect = 4.6
Identities = 10/16 (62%), Positives = 14/16 (87%)
Query: 260 IMGPSGAGKSTLLNIL 275
+MG +GAGKS+L+N L
Sbjct: 44 LMGATGAGKSSLINAL 59
>gnl|CDD|213237 cd03270, ABC_UvrA_I, ATP-binding cassette domain I of the excision
repair protein UvrA. Nucleotide excision repair in
eubacteria is a process that repairs DNA damage by the
removal of a 12-13-mer oligonucleotide containing the
lesion. Recognition and cleavage of the damaged DNA is a
multistep ATP-dependent reaction that requires the UvrA,
UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases,
with UvrA having two ATP binding sites, which have the
characteristic signature of the family of ABC proteins,
and UvrB having one ATP binding site that is
structurally related to that of helicases.
Length = 226
Score = 28.0 bits (63), Expect = 4.6
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 245 LHGISGEFKAGQLTAIMGPSGAGKSTL 271
L + + +L I G SG+GKS+L
Sbjct: 11 LKNVDVDIPRNKLVVITGVSGSGKSSL 37
>gnl|CDD|238540 cd01120, RecA-like_NTPases, RecA-like NTPases. This family includes
the NTP binding domain of F1 and V1 H+ATPases, DnaB and
related helicases as well as bacterial RecA and related
eukaryotic and archaeal recombinases. This group also
includes bacterial conjugation proteins and related DNA
transfer proteins involved in type II and type IV
secretion.
Length = 165
Score = 27.8 bits (62), Expect = 4.6
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 257 LTAIMGPSGAGKSTLLNILA 276
L + GP+G+GK+TL LA
Sbjct: 1 LILVFGPTGSGKTTLALQLA 20
>gnl|CDD|211826 TIGR03497, FliI_clade2, flagellar protein export ATPase FliI.
Members of this protein family are the FliI protein of
bacterial flagellum systems. This protein acts to drive
protein export for flagellar biosynthesis. The most
closely related family is the YscN family of bacterial
type III secretion systems. This model represents one
(of three) segment of the FliI family tree. These have
been modeled separately in order to exclude the type III
secretion ATPases more effectively [Cellular processes,
Chemotaxis and motility].
Length = 413
Score = 28.4 bits (64), Expect = 4.7
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 255 GQLTAIMGPSGAGKSTLLNILA 276
GQ I SG GKSTLL ++A
Sbjct: 137 GQRVGIFAGSGVGKSTLLGMIA 158
>gnl|CDD|216186 pfam00910, RNA_helicase, RNA helicase. This family includes RNA
helicases thought to be involved in duplex unwinding
during viral RNA replication. Members of this family are
found in a variety of single stranded RNA viruses.
Length = 105
Score = 27.2 bits (61), Expect = 4.7
Identities = 10/15 (66%), Positives = 10/15 (66%)
Query: 262 GPSGAGKSTLLNILA 276
GP G GKSTL LA
Sbjct: 5 GPPGCGKSTLAKYLA 19
>gnl|CDD|131580 TIGR02528, EutP, ethanolamine utilization protein, EutP. This
protein is found within operons which code for
polyhedral organelles containing the enzyme ethanolamine
ammonia lyase. The function of this gene is unknown,
although the presence of an N-terminal GxxGxGK motif
implies a GTP-binding site [Energy metabolism, Amino
acids and amines].
Length = 142
Score = 27.4 bits (61), Expect = 4.8
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 259 AIMGPSGAGKSTLLNILAGL 278
+G G GK+TL L G
Sbjct: 4 MFIGSVGCGKTTLTQALQGE 23
>gnl|CDD|161676 TIGR00041, DTMP_kinase, thymidylate kinase. Function:
phosphorylation of DTMP to form DTDP in both de novo and
salvage pathways of DTTP synthesis. Catalytic activity:
ATP + thymidine 5'-phosphate = ADP + thymidine
5'-diphosphate [Purines, pyrimidines, nucleosides, and
nucleotides, Nucleotide and nucleoside
interconversions].
Length = 195
Score = 27.7 bits (62), Expect = 4.9
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 254 AGQLTAIMGPSGAGKSTLLNILA 276
G I G GAGK+T N+L
Sbjct: 2 RGMFIVIEGIDGAGKTTQANLLK 24
>gnl|CDD|223556 COG0480, FusA, Translation elongation factors (GTPases)
[Translation, ribosomal structure and biogenesis].
Length = 697
Score = 28.4 bits (64), Expect = 4.9
Identities = 8/20 (40%), Positives = 10/20 (50%), Gaps = 1/20 (5%)
Query: 259 AIMGPSGAGKSTLL-NILAG 277
I+ AGK+TL IL
Sbjct: 14 GIVAHIDAGKTTLTERILFY 33
>gnl|CDD|235498 PRK05541, PRK05541, adenylylsulfate kinase; Provisional.
Length = 176
Score = 27.7 bits (62), Expect = 4.9
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 250 GEFKAGQLTAIMGPSGAGKSTL 271
G + I G +G+GK+T+
Sbjct: 2 QMKPNGYVIWITGLAGSGKTTI 23
>gnl|CDD|173172 PRK14709, PRK14709, hypothetical protein; Provisional.
Length = 469
Score = 28.5 bits (64), Expect = 5.1
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 248 ISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
++G+ + L + G G GKS LN+LAG+
Sbjct: 198 LTGDTREHALVFVFGGGGNGKSVFLNVLAGI 228
>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional.
Length = 1466
Score = 28.5 bits (63), Expect = 5.1
Identities = 10/18 (55%), Positives = 17/18 (94%)
Query: 258 TAIMGPSGAGKSTLLNIL 275
TAI+G +G+GKST++++L
Sbjct: 1197 TAIVGETGSGKSTVMSLL 1214
Score = 28.5 bits (63), Expect = 5.5
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 243 EILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
EI ++ G+ A +G SG GKST+L ++ L
Sbjct: 399 EIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERL 434
>gnl|CDD|238985 cd02027, APSK, Adenosine 5'-phosphosulfate kinase (APSK) catalyzes
the phosphorylation of adenosine 5'-phosphosulfate to
form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The
end-product PAPS is a biologically "activated" sulfate
form important for the assimilation of inorganic
sulfate.
Length = 149
Score = 27.4 bits (62), Expect = 5.2
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 262 GPSGAGKSTLLNILA 276
G SG+GKST+ L
Sbjct: 6 GLSGSGKSTIARALE 20
>gnl|CDD|226426 COG3911, COG3911, Predicted ATPase [General function prediction
only].
Length = 183
Score = 27.9 bits (62), Expect = 5.2
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 251 EFKAGQLTAIMGPSGAGKSTLLNILA 276
F + + G GAGK+TLL LA
Sbjct: 5 PFNRHKRFILTGGPGAGKTTLLAALA 30
>gnl|CDD|217424 pfam03205, MobB, Molybdopterin guanine dinucleotide synthesis
protein B. This protein contains a P-loop.
Length = 126
Score = 27.4 bits (61), Expect = 5.3
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 259 AIMGPSGAGKSTLLNILA 276
++GP +GK+TL+ L
Sbjct: 4 LVVGPKDSGKTTLIRKLL 21
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and
chromosome partitioning].
Length = 1163
Score = 28.5 bits (64), Expect = 5.3
Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 3/23 (13%)
Query: 256 QLTAIMGPSGAGKSTLLNILAGL 278
TAI+GP+G+GKS NI+ +
Sbjct: 25 GFTAIVGPNGSGKS---NIVDAI 44
>gnl|CDD|222804 PHA00520, PHA00520, packaging NTPase P4.
Length = 330
Score = 27.9 bits (62), Expect = 5.5
Identities = 20/86 (23%), Positives = 34/86 (39%), Gaps = 13/86 (15%)
Query: 192 SALLFEKFDSLYALAKGHCIYRGSISRLVPHLASLGLPC-PAYHNPADFLNKEILHGISG 250
+ F K D ++ + G V + L + C P H ++ I G
Sbjct: 72 KIIGFHKGDVAVVESQVKVVRPGHRGWDVIITSVLTVACAPVVHR---WIGHRIESG--- 125
Query: 251 EFKAGQLTAIMGPSGAGKSTLLNILA 276
+ ++G +G+GK+ LLN LA
Sbjct: 126 ------VEVVVGGTGSGKTPLLNALA 145
>gnl|CDD|226986 COG4639, COG4639, Predicted kinase [General function prediction
only].
Length = 168
Score = 27.4 bits (61), Expect = 5.6
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 257 LTAIMGPSGAGKSTL 271
L + G SG+GKST
Sbjct: 4 LVVLRGASGSGKSTF 18
>gnl|CDD|224847 COG1936, COG1936, Predicted nucleotide kinase (related to CMP and
AMP kinases) [Nucleotide transport and metabolism].
Length = 180
Score = 27.7 bits (62), Expect = 6.0
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 257 LTAIMGPSGAGKSTLLNILAGLTY 280
L AI G G GK+T+ +L L Y
Sbjct: 2 LIAITGTPGVGKTTVCKLLRELGY 25
>gnl|CDD|221970 pfam13191, AAA_16, AAA ATPase domain. This family of domains
contain a P-loop motif that is characteristic of the AAA
superfamily.
Length = 154
Score = 27.2 bits (60), Expect = 6.1
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 254 AGQLTAIMGPSGAGKSTLLN 273
+ GPSG GK++LL
Sbjct: 23 GPPSVLLTGPSGTGKTSLLR 42
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain. This domain is
found at the N terminus of SMC proteins. The SMC
(structural maintenance of chromosomes) superfamily
proteins have ATP-binding domains at the N- and
C-termini, and two extended coiled-coil domains
separated by a hinge in the middle. The eukaryotic SMC
proteins form two kind of heterodimers: the SMC1/SMC3
and the SMC2/SMC4 types. These heterodimers constitute
an essential part of higher order complexes, which are
involved in chromatin and DNA dynamics. This family also
includes the RecF and RecN proteins that are involved in
DNA metabolism and recombination.
Length = 1162
Score = 28.4 bits (63), Expect = 6.1
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 4/28 (14%)
Query: 248 ISGEFKAGQLTAIMGPSGAGKSTLLNIL 275
+ F + TAI+GP+G+GKS NIL
Sbjct: 17 VILPF-SPGFTAIVGPNGSGKS---NIL 40
>gnl|CDD|216586 pfam01583, APS_kinase, Adenylylsulphate kinase. Enzyme that
catalyzes the phosphorylation of adenylylsulphate to
3'-phosphoadenylylsulfate. This domain contains an ATP
binding P-loop motif.
Length = 157
Score = 27.2 bits (61), Expect = 6.1
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 262 GPSGAGKSTLLNILA 276
G SG+GKST+ N L
Sbjct: 9 GLSGSGKSTIANALE 23
>gnl|CDD|238687 cd01393, recA_like, RecA is a bacterial enzyme which has roles in
homologous recombination, DNA repair, and the induction
of the SOS response. RecA couples ATP hydrolysis to DNA
strand exchange. While prokaryotes have a single RecA
protein, eukaryotes have multiple RecA homologs such as
Rad51, DMC1 and Rad55/57. Archaea have the RecA-like
homologs radA and radB.
Length = 226
Score = 27.5 bits (62), Expect = 6.2
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
Query: 243 EILHGISGEFKAGQLTAIMGPSGAGKSTL 271
E+L G G G++T I G G+GK+ L
Sbjct: 10 ELLGG--G-IPTGRITEIFGEFGSGKTQL 35
>gnl|CDD|206728 cd04165, GTPBP1_like, GTP binding protein 1 (GTPBP1)-like family
includes GTPBP2. Mammalian GTP binding protein 1
(GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1
are GTPases whose specific functions remain unknown. In
mouse, GTPBP1 is expressed in macrophages, in smooth
muscle cells of various tissues and in some neurons of
the cerebral cortex; GTPBP2 tissue distribution appears
to overlap that of GTPBP1. In human leukemia and
macrophage cell lines, expression of both GTPBP1 and
GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The
chromosomal location of both genes has been identified
in humans, with GTPBP1 located in chromosome 22q12-13.1
and GTPBP2 located in chromosome 6p21-12. Human
glioblastoma multiforme (GBM), a highly-malignant
astrocytic glioma and the most common cancer in the
central nervous system, has been linked to chromosomal
deletions and a translocation on chromosome 6. The GBM
translocation results in a fusion of GTPBP2 and PTPRZ1,
a protein involved in oligodendrocyte differentiation,
recovery, and survival. This fusion product may
contribute to the onset of GBM.
Length = 224
Score = 27.6 bits (62), Expect = 6.2
Identities = 10/17 (58%), Positives = 13/17 (76%)
Query: 259 AIMGPSGAGKSTLLNIL 275
A++G AGKSTLL +L
Sbjct: 3 AVVGNVDAGKSTLLGVL 19
>gnl|CDD|163260 TIGR03432, yjhG_yagF, putative dehydratase, YjhG/YagF family. This
homolog of dihydroxy-acid dehydratases has an odd,
sparse distribution. Members are found in two
Acidobacteria, two Planctomycetes, Bacillus clausii
KSM-K16, and (in two copies each) in strains K12-MG1655
and W3110 of Escherichia coli. The local context is not
well conserved, but a few members are adjacent to
homologs of the gluconate:H+ symporter (see TIGR00791)
[Unknown function, Enzymes of unknown specificity].
Length = 640
Score = 28.2 bits (63), Expect = 6.2
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 249 SGEFKAGQLTAIM--GPSGAGKSTLLNILAGLTYLNFSK 285
G+ +AG + ++ GPSG G + + L YL+F K
Sbjct: 482 HGKIEAGDVLVLIGRGPSGTGMEETYQVTSALKYLSFGK 520
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC,
primarily archaeal type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. It is found
in a single copy and is homodimeric in prokaryotes, but
six paralogs (excluded from this family) are found in
eukarotes, where SMC proteins are heterodimeric. This
family represents the SMC protein of archaea and a few
bacteria (Aquifex, Synechocystis, etc); the SMC of other
bacteria is described by TIGR02168. The N- and
C-terminal domains of this protein are well conserved,
but the central hinge region is skewed in composition
and highly divergent [Cellular processes, Cell division,
DNA metabolism, Chromosome-associated proteins].
Length = 1164
Score = 28.1 bits (63), Expect = 6.4
Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 3/22 (13%)
Query: 257 LTAIMGPSGAGKSTLLNILAGL 278
T I GP+G+GKS NI +
Sbjct: 25 FTVISGPNGSGKS---NIGDAI 43
>gnl|CDD|238260 cd00464, SK, Shikimate kinase (SK) is the fifth enzyme in the
shikimate pathway, a seven-step biosynthetic pathway
which converts erythrose-4-phosphate to chorismic acid,
found in bacteria, fungi and plants. Chorismic acid is a
important intermediate in the synthesis of aromatic
compounds, such as aromatic amino acids, p-aminobenzoic
acid, folate and ubiquinone. Shikimate kinase catalyses
the phosphorylation of the 3-hydroxyl group of shikimic
acid using ATP.
Length = 154
Score = 27.1 bits (61), Expect = 6.5
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 259 AIMGPSGAGKSTLLNILA 276
++G GAGK+T+ +LA
Sbjct: 3 VLIGMMGAGKTTVGRLLA 20
>gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding
subunit; Provisional.
Length = 400
Score = 28.1 bits (62), Expect = 6.5
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 255 GQLTAIMGPSGAGKSTLLNILAGL 278
G++ IMG SG+GKST++ +L L
Sbjct: 54 GEIFVIMGLSGSGKSTMVRLLNRL 77
>gnl|CDD|216094 pfam00747, Viral_DNA_bp, ssDNA binding protein. This protein is
found in herpesviruses and is needed for replication.
Length = 1111
Score = 28.1 bits (63), Expect = 6.5
Identities = 22/108 (20%), Positives = 37/108 (34%), Gaps = 18/108 (16%)
Query: 167 AYHNPADFPNLAKQGRTVVATIHTPSALLFEKFDSLYA-----LAKGHCIYRGSISRLVP 221
NPA FP + + + + K D + A + ++ + P
Sbjct: 887 TRQNPAQFPVVLWDRPKFASVAEYAAHVKKLKADGVPAPWTATFTSEPLL--RTVFKQRP 944
Query: 222 HLASLGLPCPAYHNPADFLNKEILHGISGEFKAGQLTAIMGPSGAGKS 269
+ +LGL Y A N + F+AG L MG G ++
Sbjct: 945 -MVTLGLSIEKYTGVAG--NNRV-------FQAGNLGYFMG-GGVDRN 981
>gnl|CDD|220654 pfam10254, Pacs-1, PACS-1 cytosolic sorting protein. PACS-1 is a
cytosolic sorting protein that directs the localisation
of membrane proteins in the trans-Golgi network
(TGN)/endosomal system. PACS-1 connects the clathrin
adaptor AP-1 to acidic cluster sorting motifs contained
in the cytoplasmic domain of cargo proteins such as
furin, the cation-independent mannose-6-phosphate
receptor and in viral proteins such as human
immunodeficiency virus type 1 Nef.
Length = 413
Score = 27.9 bits (62), Expect = 6.6
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 10/54 (18%)
Query: 69 VSTQEKKDQVSLELWNNFCKKKKKKKRGLDSSSCSQCVSLLANL---AKQGRTV 119
V T+EK +V + F KK K+K + S SQC+ ++ L AKQ +T+
Sbjct: 329 VVTKEKNKKVPVM----FLGKKPKEK---EVESKSQCIEGISRLICSAKQQQTM 375
>gnl|CDD|184896 PRK14903, PRK14903, 16S rRNA methyltransferase B; Provisional.
Length = 431
Score = 27.9 bits (62), Expect = 6.6
Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Query: 108 LLANLAKQGRTVVATIHTPSALLFEKFD----SLYALAKGHCIYRGSISRLVPHLASL 161
++ LA++G V H+P +L+ K + G +G S++VP L L
Sbjct: 178 VIKILAEEGTEAVPGKHSPFSLIVRKLGVNMNDSRVIKDGLATVQGESSQIVPLLMEL 235
Score = 27.5 bits (61), Expect = 8.1
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Query: 177 LAKQGRTVVATIHTPSALLFEKFD----SLYALAKGHCIYRGSISRLVPHLASL 226
LA++G V H+P +L+ K + G +G S++VP L L
Sbjct: 182 LAEEGTEAVPGKHSPFSLIVRKLGVNMNDSRVIKDGLATVQGESSQIVPLLMEL 235
>gnl|CDD|201353 pfam00625, Guanylate_kin, Guanylate kinase.
Length = 183
Score = 27.3 bits (61), Expect = 6.7
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 260 IMGPSGAGKSTLLNIL 275
+ GPSG GKS + L
Sbjct: 7 LSGPSGVGKSHIKKAL 22
>gnl|CDD|224027 COG1102, Cmk, Cytidylate kinase [Nucleotide transport and
metabolism].
Length = 179
Score = 27.3 bits (61), Expect = 6.9
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
Query: 259 AIMGPSGAGKSTLLNILA---GLTYLN 282
I G G+GK+T+ LA GL ++
Sbjct: 4 TISGLPGSGKTTVARELAEHLGLKLVS 30
>gnl|CDD|224260 COG1341, COG1341, Predicted GTPase or GTP-binding protein [General
function prediction only].
Length = 398
Score = 27.7 bits (62), Expect = 7.1
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 259 AIMGPSGAGKSTLLNILA 276
++GP +GKSTL LA
Sbjct: 77 MVVGPVDSGKSTLTTYLA 94
>gnl|CDD|185364 PRK15467, PRK15467, ethanolamine utilization protein EutP;
Provisional.
Length = 158
Score = 27.2 bits (60), Expect = 7.1
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 259 AIMGPSGAGKSTLLNILAG 277
A +G GAGK+TL N L G
Sbjct: 5 AFVGAVGAGKTTLFNALQG 23
>gnl|CDD|169719 PRK09212, PRK09212, pyruvate dehydrogenase subunit beta; Validated.
Length = 327
Score = 27.8 bits (62), Expect = 7.2
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 235 NPADFLNKEILHGISGEFKAGQLTAIMG 262
NP FL EIL+G S E + + +G
Sbjct: 166 NPVIFLENEILYGHSHEVPEEEESIPIG 193
>gnl|CDD|129547 TIGR00455, apsK, adenylylsulfate kinase (apsK). This protein,
adenylylsulfate kinase, is often found as a fusion
protein with sulfate adenylyltransferase. Important
residue (active site in E.coli) is residue 100 of the
seed alignment [Central intermediary metabolism, Sulfur
metabolism].
Length = 184
Score = 27.4 bits (61), Expect = 7.2
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 260 IMGPSGAGKSTLLNILA 276
+ G SG+GKST+ N L
Sbjct: 23 LTGLSGSGKSTIANALE 39
>gnl|CDD|222413 pfam13843, DDE_Tnp_1_7, Transposase IS4.
Length = 352
Score = 27.6 bits (62), Expect = 7.5
Identities = 14/83 (16%), Positives = 26/83 (31%), Gaps = 13/83 (15%)
Query: 51 LTVTEAMMIASHLKLGFKVSTQEKKDQVSLELWN------------NFCKKKKKKKRGLD 98
L V E ++ + F+ K + ++L + K+++ R
Sbjct: 134 LVVDE-SLVLFKGRCSFRQYIPNKPRKYGIKLHLLCDSSTGYIINFEVYEGKQREGRNEL 192
Query: 99 SSSCSQCVSLLANLAKQGRTVVA 121
+ LL L GR V
Sbjct: 193 GLGNKVVLRLLEPLLGTGRHVYM 215
>gnl|CDD|224574 COG1660, COG1660, Predicted P-loop-containing kinase [General
function prediction only].
Length = 286
Score = 27.6 bits (62), Expect = 8.0
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 260 IMGPSGAGKSTLLNILAGLTY 280
+ G SGAGKS L +L L Y
Sbjct: 6 VTGLSGAGKSVALRVLEDLGY 26
>gnl|CDD|152128 pfam11692, DUF3289, Protein of unknown function (DUF3289). This
family of proteins with unknown function appears to be
restricted to Proteobacteria.
Length = 277
Score = 27.4 bits (61), Expect = 8.1
Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 10/75 (13%)
Query: 167 AYHNPADFPNLAKQGRTVVATIHTPSALLFEKFDSLYALAKGHCIYRGSISRLVPHLASL 226
++N DF + ++G + T + +LF++F +L + Y+ I RL+ H+
Sbjct: 60 PFNNQLDFMHQDEKGEKI--TRQECADILFDEFRTLSVSFSFYGPYKHLIGRLIDHM--- 114
Query: 227 GLPCPAYHNPADFLN 241
Y N A F +
Sbjct: 115 -----QYGNGAPFRD 124
>gnl|CDD|180660 PRK06696, PRK06696, uridine kinase; Validated.
Length = 223
Score = 27.2 bits (61), Expect = 8.2
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 259 AIMGPSGAGKSTLLNILAGL 278
AI G + +GK+T + LA
Sbjct: 26 AIDGITASGKTTFADELAEE 45
>gnl|CDD|234003 TIGR02768, TraA_Ti, Ti-type conjugative transfer relaxase TraA.
This protein contains domains distinctive of a single
strand exonuclease (N-terminus, MobA/MobL, pfam03389) as
well as a helicase domain (central region, homologous to
the corresponding region of the F-type relaxase TraI,
TIGR02760). This protein likely fills the same role as
TraI(F), nicking (at the oriT site) and unwinding the
coiled plasmid prior to conjugative transfer.
Length = 744
Score = 27.8 bits (62), Expect = 8.2
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 240 LNKEILHGISGEFKAGQLTAIMGPSGAGKSTLL 272
L++E + +G + ++G +G GKST+L
Sbjct: 353 LSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTML 385
>gnl|CDD|222307 pfam13671, AAA_33, AAA domain. This family of domains contain only
a P-loop motif, that is characteristic of the AAA
superfamily. Many of the proteins in this family are
just short fragments so there is no Walker B motif.
Length = 143
Score = 26.9 bits (60), Expect = 8.5
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 257 LTAIMGPSGAGKSTL 271
L ++G G+GKST
Sbjct: 1 LILMVGLPGSGKSTF 15
>gnl|CDD|180526 PRK06315, PRK06315, type III secretion system ATPase; Provisional.
Length = 442
Score = 27.6 bits (61), Expect = 8.7
Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 10/56 (17%)
Query: 231 PAYHNPADFLNKEILHG--------ISGEFKA--GQLTAIMGPSGAGKSTLLNILA 276
P + P D L++ L I G GQ I +G GKS+LL ++A
Sbjct: 130 PIFRAPPDPLHRAKLRTILSTGVRCIDGMLTVARGQRIGIFAGAGVGKSSLLGMIA 185
>gnl|CDD|223993 COG1066, Sms, Predicted ATP-dependent serine protease
[Posttranslational modification, protein turnover,
chaperones].
Length = 456
Score = 27.6 bits (62), Expect = 8.7
Identities = 10/18 (55%), Positives = 11/18 (61%)
Query: 255 GQLTAIMGPSGAGKSTLL 272
G + I G G GKSTLL
Sbjct: 93 GSVILIGGDPGIGKSTLL 110
>gnl|CDD|234654 PRK00131, aroK, shikimate kinase; Reviewed.
Length = 175
Score = 27.1 bits (61), Expect = 8.8
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 262 GPSGAGKSTLLNILAGLTYLNF 283
G GAGKST+ +LA +F
Sbjct: 11 GFMGAGKSTIGRLLAKRLGYDF 32
>gnl|CDD|215649 pfam00004, AAA, ATPase family associated with various cellular
activities (AAA). AAA family proteins often perform
chaperone-like functions that assist in the assembly,
operation, or disassembly of protein complexes.
Length = 131
Score = 26.8 bits (60), Expect = 8.9
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 262 GPSGAGKSTLLNILAGLTYLNF 283
GP G GK+TL +A F
Sbjct: 5 GPPGTGKTTLAKAVAKELGAPF 26
>gnl|CDD|206669 cd01882, BMS1, Bms1, an essential GTPase, promotes assembly of
preribosomal RNA processing complexes. Bms1 is an
essential, evolutionarily conserved, nucleolar protein.
Its depletion interferes with processing of the 35S
pre-rRNA at sites A0, A1, and A2, and the formation of
40S subunits. Bms1, the putative endonuclease Rc11, and
the essential U3 small nucleolar RNA form a stable
subcomplex that is believed to control an early step in
the formation of the 40S subumit. The C-terminal domain
of Bms1 contains a GTPase-activating protein (GAP) that
functions intramolecularly. It is believed that Rc11
activates Bms1 by acting as a guanine-nucleotide
exchange factor (GEF) to promote GDP/GTP exchange, and
that activated (GTP-bound) Bms1 delivers Rc11 to the
preribosomes.
Length = 231
Score = 27.3 bits (61), Expect = 9.1
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 257 LTAIMGPSGAGKSTLLNIL 275
+ ++GP G GKSTL+ L
Sbjct: 41 VVVVVGPPGVGKSTLIRSL 59
>gnl|CDD|238541 cd01121, Sms, Sms (bacterial radA) DNA repair protein. This protein
is not related to archael radA any more than is to other
RecA-like NTPases. Sms has a role in recombination and
recombinational repair and is responsible for the
stabilization or processing of branched DNA molecules.
Length = 372
Score = 27.6 bits (62), Expect = 9.2
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 254 AGQLTAIMGPSGAGKSTLL 272
G + I G G GKSTLL
Sbjct: 81 PGSVILIGGDPGIGKSTLL 99
>gnl|CDD|237358 PRK13351, PRK13351, elongation factor G; Reviewed.
Length = 687
Score = 27.6 bits (62), Expect = 9.3
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 259 AIMGPSGAGKSTLL 272
I+ AGK+TL
Sbjct: 12 GILAHIDAGKTTLT 25
>gnl|CDD|223998 COG1072, CoaA, Panthothenate kinase [Coenzyme metabolism].
Length = 283
Score = 27.2 bits (61), Expect = 9.3
Identities = 9/20 (45%), Positives = 9/20 (45%)
Query: 259 AIMGPSGAGKSTLLNILAGL 278
I G GKST IL L
Sbjct: 86 GIAGSVAVGKSTTARILQAL 105
>gnl|CDD|180124 PRK05537, PRK05537, bifunctional sulfate adenylyltransferase
subunit 1/adenylylsulfate kinase protein; Validated.
Length = 568
Score = 27.7 bits (62), Expect = 9.4
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 262 GPSGAGKSTLLNILA 276
G SGAGKST+ L
Sbjct: 399 GLSGAGKSTIAKALM 413
>gnl|CDD|215570 PLN03091, PLN03091, hypothetical protein; Provisional.
Length = 459
Score = 27.6 bits (61), Expect = 9.5
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 12/72 (16%)
Query: 38 SCYIQQDDALRPKLT------VTEAMMIASHLKLGFKVST-----QEKKDQVSLELWNNF 86
SC ++ + LRP L E ++I H LG + S + D LWN+
Sbjct: 52 SCRLRWINYLRPDLKRGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNS- 110
Query: 87 CKKKKKKKRGLD 98
C KKK ++RG+D
Sbjct: 111 CLKKKLRQRGID 122
>gnl|CDD|200399 TIGR04148, GG_samocin_CFB, radical SAM peptide maturase,
GG-Bacteroidales family. Members of this protein family
are radical SAM enzymes (pfam04055) with the additional
C-terminal region (TIGR04085) that is frequently a
marker of peptide modification. Many members of this
family are found in the vicinity of one or several ORFs
encoding short polypeptides with a Gly-Gly motif (common
for bacteriocin leader peptide cleavage), followed by a
Cys-rich patch and then poorly conserved sequences.
Length = 411
Score = 27.3 bits (61), Expect = 9.5
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 81 ELWNNFCKKKKKK-KRGLDSSSCSQCVSLLANLAKQ 115
+ +N + K + + K SCSQC+ L NL KQ
Sbjct: 339 KKYNKYYNKIENQCKHCYLKRSCSQCIFYLKNLDKQ 374
>gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC. All proteins in this family for
which functions are known are part of an exonuclease
complex with sbcD homologs. This complex is involved in
the initiation of recombination to regulate the levels
of palindromic sequences in DNA. This family is based on
the phylogenomic analysis of JA Eisen (1999, Ph.D.
Thesis, Stanford University) [DNA metabolism, DNA
replication, recombination, and repair].
Length = 1042
Score = 27.6 bits (61), Expect = 9.6
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Query: 255 GQLTAIMGPSGAGKSTLLNILAGLTYLNFSKC 286
G + I G +GAGK+TLL+ +TY + K
Sbjct: 26 GPIFLICGKTGAGKTTLLD---AITYALYGKL 54
Score = 27.6 bits (61), Expect = 9.9
Identities = 23/130 (17%), Positives = 46/130 (35%), Gaps = 15/130 (11%)
Query: 4 ELNVQSIRLTGSSGKILVNGQ---ERKSACIEQFLKLSCYIQQDDALRPKLTVT--EAMM 58
E+ + + + + +G+ +A Q L L ++RP T++ E +
Sbjct: 899 EITLYANVRLANQSEGRFHGRYADSHVNARKYQGLALLVADAYTGSVRPSATLSGGETFL 958
Query: 59 IASHLKLGFK--VSTQEKKDQVSLELWNNFCKKKKKKKRGLDSSSCSQCVSLLANLAKQG 116
+ L L +ST SL + F LD S + + +L + +
Sbjct: 959 ASLSLALALADLLSTSGGTVLDSLFIDEGFGS--------LDEDSLDRAIGILDAIREGS 1010
Query: 117 RTVVATIHTP 126
+ + H P
Sbjct: 1011 KMIGIISHVP 1020
>gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 27.3 bits (60), Expect = 9.7
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 245 LHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
L I+ K G+ I+G +G+GKSTL L GL
Sbjct: 18 LENINLVIKKGEYIGIIGKNGSGKSTLALHLNGL 51
>gnl|CDD|236781 PRK10869, PRK10869, recombination and repair protein; Provisional.
Length = 553
Score = 27.6 bits (62), Expect = 9.7
Identities = 10/19 (52%), Positives = 15/19 (78%), Gaps = 1/19 (5%)
Query: 251 EFKAGQLTAIMGPSGAGKS 269
+F++G +T I G +GAGKS
Sbjct: 19 DFQSG-MTVITGETGAGKS 36
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.134 0.398
Gapped
Lambda K H
0.267 0.0534 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 14,006,502
Number of extensions: 1304883
Number of successful extensions: 2529
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2517
Number of HSP's successfully gapped: 626
Length of query: 286
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 190
Effective length of database: 6,679,618
Effective search space: 1269127420
Effective search space used: 1269127420
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.6 bits)