RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8953
(286 letters)
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein;
structural genomics; 1.70A {Aquifex aeolicus} PDB:
2pcl_A
Length = 224
Score = 61.7 bits (151), Expect = 1e-11
Identities = 21/36 (58%), Positives = 25/36 (69%)
Query: 243 EILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
EIL GIS K G+ +I+G SG+GKSTLL IL L
Sbjct: 18 EILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLL 53
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane,
membrane, transmembrane, transport, ATP- binding,
hydrolase, nucleotide-binding, periplasm; HET: 1PE;
2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Length = 249
Score = 60.7 bits (148), Expect = 4e-11
Identities = 19/38 (50%), Positives = 28/38 (73%)
Query: 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLT 279
L +SGE +AG++ ++GP+GAGKSTLL +AG+T
Sbjct: 13 STRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT 50
Score = 32.1 bits (74), Expect = 0.16
Identities = 10/44 (22%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Query: 108 LLANLAKQGRTVVATIHTPS-ALLFEKFDSLYALAKGHCIYRGS 150
+L+ L++QG +V + H + L + L G + G
Sbjct: 175 ILSALSQQGLAIVMSSHDLNHTLRH--AHRAWLLKGGKMLASGR 216
Score = 28.7 bits (65), Expect = 1.9
Identities = 9/40 (22%), Positives = 16/40 (40%), Gaps = 3/40 (7%)
Query: 177 LAKQGRTVVATIHTPS-ALLFEKFDSLYALAKGHCIYRGS 215
L++QG +V + H + L + L G + G
Sbjct: 179 LSQQGLAIVMSSHDLNHTLRH--AHRAWLLKGGKMLASGR 216
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, binding; 1.70A {Thermus thermophilus} PDB:
2d2f_A*
Length = 250
Score = 60.6 bits (148), Expect = 5e-11
Identities = 19/37 (51%), Positives = 26/37 (70%)
Query: 241 NKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAG 277
+ IL G++ G++ A+MGP+GAGKSTL ILAG
Sbjct: 15 GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAG 51
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster,
ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding;
HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Length = 267
Score = 60.6 bits (148), Expect = 6e-11
Identities = 20/37 (54%), Positives = 27/37 (72%)
Query: 241 NKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAG 277
+K IL G+S + G++ AIMGP+G+GKSTL LAG
Sbjct: 32 DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAG 68
>3tif_A Uncharacterized ABC transporter ATP-binding prote;
nucleotide-binding domain, ABC transporter ATPase; HET:
ADP; 1.80A {Methanocaldococcus jannaschii dsm
2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Length = 235
Score = 58.7 bits (143), Expect = 2e-10
Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 243 EILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
L ++ K G+ +IMGPSG+GKST+LNI+ L
Sbjct: 19 YALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCL 54
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette,
hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Length = 279
Score = 58.0 bits (141), Expect = 5e-10
Identities = 17/40 (42%), Positives = 21/40 (52%)
Query: 241 NKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTY 280
K IL IS + G + G +GAGK+TLLNIL
Sbjct: 33 GKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEP 72
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur
cluster, adenosine diphosphate, nucleotide-binding; HET:
ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Length = 607
Score = 58.9 bits (143), Expect = 5e-10
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 233 YHNPADFLNKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
Y L GE + G++ I+GP+G GK+T + +LAG+
Sbjct: 360 YPRLVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGV 405
Score = 49.6 bits (119), Expect = 5e-07
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 241 NKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
N +L+ + K G + I+GP+G GK+T + ILAG
Sbjct: 104 NAFVLYRLPI-VKDGMVVGIVGPNGTGKTTAVKILAGQ 140
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET:
ATP; NMR {Saccharomyces cerevisiae}
Length = 608
Score = 57.3 bits (139), Expect = 1e-09
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 239 FLNKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
+L+ GEF ++ +MG +G GK+TL+ +LAG
Sbjct: 362 TQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGA 401
Score = 48.5 bits (116), Expect = 1e-06
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 241 NKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
N LH + + GQ+ ++G +G GKST L ILAG
Sbjct: 90 NSFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGK 126
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis,
hydrolyase/translation complex; HET: ADP; 1.90A
{Pyrococcus furiosus}
Length = 538
Score = 55.8 bits (135), Expect = 5e-09
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 233 YHNPADFLNKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
Y L GE K G++ I+GP+G GK+T + +LAG+
Sbjct: 290 YPRLVKDYGSFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGV 335
Score = 44.2 bits (105), Expect = 3e-05
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 241 NKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLTYLNF 283
N +L+ + K G + I+GP+G GKST + ILAG N
Sbjct: 34 NAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNL 75
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter,
ABCB6, nucleotide binding domain, heme BIOS transport
protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A*
3nhb_A*
Length = 306
Score = 54.1 bits (131), Expect = 1e-08
Identities = 17/35 (48%), Positives = 23/35 (65%)
Query: 241 NKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNIL 275
+E L +S GQ A++GPSGAGKST+L +L
Sbjct: 66 GRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLL 100
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative
iron chelatin ABC transporter, nucleotide binding
domain; 2.40A {Haemophilus influenzae}
Length = 253
Score = 52.6 bits (127), Expect = 3e-08
Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Query: 232 AYHNPADFLNKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
Y + ++ + G + A++G +G GKSTLL++L G+
Sbjct: 13 YYQA-----ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGI 54
Score = 27.5 bits (62), Expect = 4.1
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 4/39 (10%)
Query: 107 SLLANLAK-QGRTVVATIHTP-SALLFEKFDSLYALAKG 143
SLL +LA+ Q TVV T H P + + L K
Sbjct: 169 SLLIDLAQSQNMTVVFTTHQPNQVVAI--ANKTLLLNKQ 205
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease
protein; asymmetric dimer, tetramer, P-glycoprotein;
HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Length = 243
Score = 52.1 bits (126), Expect = 4e-08
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 241 NKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNIL 275
+++IL IS E + + A GPSG GKST+ ++L
Sbjct: 14 SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLL 48
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural
genomics, structural genomics consortium, SGC; 2.20A
{Plasmodium yoelii yoelii str}
Length = 260
Score = 52.2 bits (126), Expect = 4e-08
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 241 NKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNIL 275
N L I+ +G A++G +G+GKST+ +L
Sbjct: 32 NHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLL 66
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; 5.50A {Vibrio cholerae}
Length = 582
Score = 53.0 bits (128), Expect = 4e-08
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 241 NKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNIL 275
K L +S G+ A++G SG+GKST+ N+
Sbjct: 355 EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLF 389
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase,
translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Length = 538
Score = 52.7 bits (127), Expect = 4e-08
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
L +GE K G++ I+GP+G GK+T IL G
Sbjct: 281 DFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGE 317
Score = 46.2 bits (110), Expect = 6e-06
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 253 KAGQLTAIMGPSGAGKSTLLNILAGLTYLNF 283
K + ++G +G GK+T+L ILAG NF
Sbjct: 23 KNNTILGVLGKNGVGKTTVLKILAGEIIPNF 53
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; HET: ANP; 3.70A {Salmonella
typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A*
3b5z_A* 3b5w_A
Length = 582
Score = 52.6 bits (127), Expect = 6e-08
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 241 NKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNIL 275
L I+ + AG+ A++G SG+GKST+ +++
Sbjct: 355 EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLI 389
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288;
multidrug transporter, transport protein; HET: ANP;
2.90A {Thermotoga maritima}
Length = 598
Score = 51.4 bits (124), Expect = 1e-07
Identities = 15/35 (42%), Positives = 25/35 (71%)
Query: 241 NKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNIL 275
K +L I+ K GQ A++GP+G+GK+T++N+L
Sbjct: 367 KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLL 401
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION
channel, transport protein, casse protein; 2.00A {Homo
sapiens} PDB: 2onj_A* 2hyd_A
Length = 578
Score = 51.4 bits (124), Expect = 1e-07
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 241 NKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNIL 275
IL I+ + G+ A +G SG GKSTL+N++
Sbjct: 353 EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLI 387
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga
maritima} SCOP: c.37.1.12
Length = 240
Score = 50.1 bits (121), Expect = 1e-07
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 243 EILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
+ GI + GQ+ ++G +GAGK+T L+ +AGL
Sbjct: 20 HAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGL 55
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural
genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Length = 263
Score = 50.0 bits (120), Expect = 2e-07
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 241 NKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLT 279
+ L I+ E G+ I+GP+G+GK+TLL ++GL
Sbjct: 17 ERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL 54
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta
motif, beta sandwich, ligand binding protein; 1.90A
{Alicyclobacillus acidocaldarius}
Length = 355
Score = 49.5 bits (119), Expect = 4e-07
Identities = 14/35 (40%), Positives = 27/35 (77%)
Query: 244 ILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
+ G+S + + G++ ++GPSG+GK+T+L ++AGL
Sbjct: 30 SVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGL 64
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB;
ABC-transporter, transport protein; HET: ADP; 1.60A
{Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A*
2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Length = 247
Score = 48.6 bits (117), Expect = 5e-07
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 243 EILHGISGEFKAGQLTAIMGPSGAGKSTLLNIL 275
IL I+ K G++ I+G SG+GKSTL ++
Sbjct: 23 VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI 55
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt
transport, TM02 hydrolase, inner membrane, membrane,
nucleotide-binding; 2.30A {Thermotoga maritima}
Length = 266
Score = 48.4 bits (116), Expect = 7e-07
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
K+ L +S G+ + G +G+GKSTLL I+AGL
Sbjct: 20 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGL 56
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP;
1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Length = 262
Score = 48.3 bits (116), Expect = 7e-07
Identities = 15/30 (50%), Positives = 23/30 (76%)
Query: 243 EILHGISGEFKAGQLTAIMGPSGAGKSTLL 272
E+L G+S + +AG + +I+G SG+GKST L
Sbjct: 20 EVLKGVSLQARAGDVISIIGSSGSGKSTFL 49
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding
domain, ABC motor domain, ferric iron transport, cell
inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Length = 359
Score = 48.3 bits (116), Expect = 1e-06
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 245 LHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
L+ IS G++ I+G SG GK+TLL LAG
Sbjct: 20 LNDISLSLDPGEILFIIGASGCGKTTLLRCLAGF 53
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell
membrane, cobalt transport, hydrolase, ION transport;
2.30A {Clostridium perfringens atcc 13124}
Length = 275
Score = 47.9 bits (115), Expect = 1e-06
Identities = 16/38 (42%), Positives = 22/38 (57%)
Query: 241 NKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
L GI+ K G++TAI+G +G GKSTL G+
Sbjct: 20 GTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGI 57
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP,
cyclic peptide, membrane protein; 3.80A {Mus musculus}
PDB: 3g61_A* 3g60_A*
Length = 1284
Score = 48.9 bits (117), Expect = 1e-06
Identities = 14/35 (40%), Positives = 24/35 (68%)
Query: 241 NKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNIL 275
+IL G++ + K+GQ A++G SG GKST + ++
Sbjct: 402 EVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLM 436
Score = 47.0 bits (112), Expect = 5e-06
Identities = 16/35 (45%), Positives = 24/35 (68%)
Query: 241 NKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNIL 275
+ +L G+S E K GQ A++G SG GKST++ +L
Sbjct: 1045 SIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLL 1079
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding
protein; structural genomics, NPPSFA; 1.94A {Pyrococcus
horikoshii}
Length = 362
Score = 48.4 bits (116), Expect = 1e-06
Identities = 18/38 (47%), Positives = 27/38 (71%)
Query: 241 NKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
N L+ I+ + K G+ A++GPSG+GKSTLL +AG+
Sbjct: 15 NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGI 52
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral
membrane protein, ATPase, ABC transporter, membrane
transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia
coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A*
3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Length = 381
Score = 47.9 bits (115), Expect = 1e-06
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 243 EILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
+ I+ + G+ +GPSG GKSTLL ++AGL
Sbjct: 17 VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGL 52
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial;
membrane protein, mitochondrial transport; HET: ACP LMT
CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Length = 595
Score = 48.4 bits (116), Expect = 1e-06
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 241 NKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNIL 275
I S +G +TA++GPSG+GKST+L++L
Sbjct: 356 EVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLL 390
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase,
ATP-binding cassette, ATPase, transport protein; 1.45A
{Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB:
1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Length = 353
Score = 47.7 bits (114), Expect = 2e-06
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 241 NKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
L ++ + G+ I+GPSGAGK+T + I+AGL
Sbjct: 17 KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGL 54
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha
and beta proteins (A/B) TM0421, structural genomics,
NPPSFA; 2.11A {Thermotoga maritima}
Length = 359
Score = 47.6 bits (114), Expect = 2e-06
Identities = 17/38 (44%), Positives = 26/38 (68%)
Query: 241 NKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
+ + G+S E K G+ A++GPSG GK+T L +LAG+
Sbjct: 15 KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGI 52
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP;
2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Length = 271
Score = 47.1 bits (113), Expect = 2e-06
Identities = 14/35 (40%), Positives = 26/35 (74%)
Query: 241 NKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNIL 275
N ++L G++ G++TA++GP+G+GKST+ +L
Sbjct: 31 NVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALL 65
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport,
maltose uptake and regulation, sugar binding protein;
1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3
c.37.1.12 PDB: 2d62_A
Length = 372
Score = 47.2 bits (113), Expect = 2e-06
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 241 NKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
+ +S E K G+ ++GPSG GK+T L ++AGL
Sbjct: 15 EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGL 52
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active
transport, sugar uptake and regulation, transport
protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3
b.40.6.3 c.37.1.12 PDB: 1vci_A*
Length = 372
Score = 46.1 bits (110), Expect = 5e-06
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 241 NKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
N ++ ++ K G+ ++GPSG GK+T L ++AGL
Sbjct: 23 NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGL 60
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding
protein; beta-core domain; HET: ADP; 1.60A
{Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB:
1gaj_A 1g9x_A*
Length = 257
Score = 45.6 bits (109), Expect = 5e-06
Identities = 16/34 (47%), Positives = 24/34 (70%)
Query: 245 LHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
L G+S G +T I+GP+G+GKSTL+N++ G
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGF 56
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding
cassette, transport protein; HET: ATP; 2.05A {Homo
sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A*
1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A*
1xfa_A*
Length = 290
Score = 45.8 bits (109), Expect = 6e-06
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 237 ADFLNKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAG 277
L +L I+ + + GQL A+ G +GAGK++LL ++ G
Sbjct: 46 FSLLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMG 86
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET:
ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A*
2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Length = 263
Score = 45.7 bits (109), Expect = 7e-06
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 5/38 (13%)
Query: 240 LNK-----EILHGISGEFKAGQLTAIMGPSGAGKSTLL 272
L K E+L GI+ + G++ ++GPSG+GKST L
Sbjct: 30 LKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFL 67
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC
transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo
sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A
1ckz_A
Length = 229
Score = 44.8 bits (107), Expect = 8e-06
Identities = 14/36 (38%), Positives = 24/36 (66%)
Query: 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAG 277
+L I+ + + GQL A+ G +GAGK++LL ++ G
Sbjct: 21 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMG 56
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins,
MRP1/ABCC1, nucleotide-binding domain, ATP- binding,
hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Length = 237
Score = 44.8 bits (107), Expect = 1e-05
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 241 NKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAG 277
+ L+GI+ G L A++G G GKS+LL+ L
Sbjct: 17 DPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLA 53
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter,
transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Length = 587
Score = 45.2 bits (108), Expect = 1e-05
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLN 273
+L G++ K G L A++G +G+GKSTL+N
Sbjct: 356 DPVLSGVNFSVKPGSLVAVLGETGSGKSTLMN 387
>1sgw_A Putative ABC transporter; structural genomics, P protein structure
initiative, southeast collaboratory for S genomics,
secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Length = 214
Score = 43.3 bits (103), Expect = 2e-05
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 241 NKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
+K +L I+ + G + GP+G GK+TLL ++
Sbjct: 21 DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTY 58
Score = 28.6 bits (65), Expect = 2.1
Identities = 17/85 (20%), Positives = 37/85 (43%), Gaps = 12/85 (14%)
Query: 12 LTGSSGKILVNGQERKSACIEQFLKLSCYIQQDDALRPKLTVTEAMMIASHLKLGFKVST 71
L G+I+ NG I + ++ ++ + K++V + + + L G KV+
Sbjct: 59 LKPLKGEIIYNGVP-----ITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLY-GVKVN- 111
Query: 72 QEKKDQV--SLELWNNFCKKKKKKK 94
+ + S+E+ + KKK +
Sbjct: 112 KNEIMDALESVEVLD---LKKKLGE 133
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance
regulator, residues 1193-1427...; CFTR, ABC transporter,
nucleotide binding domain, NBD; HET: B44; 2.70A {Homo
sapiens}
Length = 390
Score = 43.9 bits (104), Expect = 3e-05
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 244 ILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
IL IS GQ ++G +G+GKSTLL+ L
Sbjct: 36 ILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRL 70
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding,
hydrolase, nucleotide-binding; HET: GDP; 2.25A
{Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Length = 358
Score = 44.2 bits (105), Expect = 3e-05
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 254 AGQLTAIMGPSGAGKSTLLNILAG 277
G+++ G SG GKS+LLN L G
Sbjct: 214 TGRISIFAGQSGVGKSSLLNALLG 237
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Length = 302
Score = 43.7 bits (104), Expect = 3e-05
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 254 AGQLTAIMGPSGAGKSTLLNILAGL 278
G + + GPSG GKS++L+ L G
Sbjct: 164 EGFICILAGPSGVGKSSILSRLTGE 188
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein;
ATP-binding, nucleotide-binding, membrane,
transmembrane, transport protein; 3.00A {Methanosarcina
acetivorans} SCOP: b.40.6.3 c.37.1.12
Length = 348
Score = 43.7 bits (104), Expect = 3e-05
Identities = 13/34 (38%), Positives = 23/34 (67%)
Query: 245 LHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
L +S + ++G+ I+GP+GAGK+ L ++AG
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGF 49
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural
genomics, BSGC structure funded by NIH, protein
structure initiative, PSI; HET: GDP; 2.80A {Thermotoga
maritima} SCOP: b.40.4.5 c.37.1.8
Length = 301
Score = 43.3 bits (103), Expect = 4e-05
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 254 AGQLTAIMGPSGAGKSTLLNIL 275
G+++ + G SG GKS+LLN +
Sbjct: 168 KGKISTMAGLSGVGKSSLLNAI 189
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with
oligonucleotide binding fold, central GTP binding
domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5
c.37.1.8
Length = 307
Score = 43.3 bits (103), Expect = 4e-05
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 254 AGQLTAIMGPSGAGKSTLLNILAG 277
+ T G SG GKS+LLN ++
Sbjct: 172 QDKTTVFAGQSGVGKSSLLNAISP 195
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint
center for structural genomics, JCSG, protein structu
initiative, PSI; 2.10A {Thermotoga maritima} SCOP:
c.37.1.12
Length = 256
Score = 42.5 bits (101), Expect = 6e-05
Identities = 19/39 (48%), Positives = 28/39 (71%)
Query: 241 NKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGLT 279
KEIL GIS E + G++ ++GP+GAGK+T L I++ L
Sbjct: 27 KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLI 65
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein
biosynthesis, nucleotide-binding, phosphorylation, RNA-
binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces
cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Length = 986
Score = 41.9 bits (98), Expect = 2e-04
Identities = 14/51 (27%), Positives = 21/51 (41%)
Query: 227 GLPCPAYHNPADFLNKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAG 277
G + K +L+ K + I GP+G GKSTL+ +A
Sbjct: 433 GEDLCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN 483
Score = 40.8 bits (95), Expect = 4e-04
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAG 277
K + I+ + A++GP+GAGKSTL+N+L G
Sbjct: 686 KPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTG 721
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I
ABC type importer, methionine uptake transporter,
membrane protein; HET: ADP; 2.90A {Escherichia coli}
PDB: 3tuj_C 3tuz_C* 3dhw_C
Length = 366
Score = 41.1 bits (97), Expect = 2e-04
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 245 LHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
L+ +S AGQ+ ++G SGAGKSTL+ + L
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLL 77
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.0 bits (95), Expect = 3e-04
Identities = 22/130 (16%), Positives = 42/130 (32%), Gaps = 43/130 (33%)
Query: 173 DFPNLAKQGRTVVATIHTPSALLFEKFDSLY----ALAKGHCIYRGS-ISRLVPHLASLG 227
++ L +T + + E+ D LY AK + + R +L L L
Sbjct: 90 NYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN-VSRLQPYLKLRQALLEL- 147
Query: 228 LPCPAYHNPADFLNKEILHGISGEFKAGQLTAIMGPSGAGKSTL-LNILA---------- 276
PA + ++ G + G+GK+ + L++
Sbjct: 148 -------RPAKNV---LIDG-------------VL--GSGKTWVALDVCLSYKVQCKMDF 182
Query: 277 GLTYLNFSKC 286
+ +LN C
Sbjct: 183 KIFWLNLKNC 192
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein,
nucleotide-binding, zinc-binding domain, SOS response,
metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans}
PDB: 2vf8_A*
Length = 842
Score = 40.6 bits (96), Expect = 4e-04
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 245 LHGISGEFKAGQLTAIMGPSGAGKSTLLN 273
L + F G +T++ G SG+GKSTL++
Sbjct: 513 LDNLDVRFPLGVMTSVTGVSGSGKSTLVS 541
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane
protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Length = 240
Score = 39.8 bits (94), Expect = 4e-04
Identities = 10/31 (32%), Positives = 19/31 (61%), Gaps = 5/31 (16%)
Query: 248 ISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
+ ++ ++GP+GAGKS L ++AG+
Sbjct: 22 MGRDY-----CVLLGPTGAGKSVFLELIAGI 47
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation,
nucleotide metab transferase; HET: C5P; 1.50A {Thermus
thermophilus} PDB: 3akc_A* 3akd_A*
Length = 208
Score = 38.2 bits (90), Expect = 0.001
Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 3/26 (11%)
Query: 259 AIMGPSGAGKSTLLNILA---GLTYL 281
I GPS +GKS++ +A G+ YL
Sbjct: 6 TIDGPSASGKSSVARRVAAALGVPYL 31
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair;
3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Length = 993
Score = 39.0 bits (92), Expect = 0.001
Identities = 18/32 (56%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 245 LHGISGEFKAGQLTAIMGPSGAGKSTLLN-IL 275
L GI F G LT++ G SG+GKSTL+N IL
Sbjct: 658 LRGIDVSFPLGVLTSVTGVSGSGKSTLVNDIL 689
Score = 29.4 bits (67), Expect = 1.8
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 245 LHGISGEFKAGQLTAIMGPSGAGKSTLLN 273
L + + L G SG+GKS+L
Sbjct: 36 LRSVDLDLPRDALIVFTGLSGSGKSSLAF 64
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase,
transferase; NMR {Streptococcus pneumoniae} SCOP:
c.37.1.1
Length = 236
Score = 38.2 bits (90), Expect = 0.002
Identities = 14/26 (53%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
Query: 259 AIMGPSGAGKSTLLNILA---GLTYL 281
AI GP+ +GKST+ I+A G TYL
Sbjct: 20 AIDGPASSGKSTVAKIIAKDFGFTYL 45
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA
repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A
{Geobacillus}
Length = 670
Score = 38.7 bits (91), Expect = 0.002
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 245 LHGISGEFKAGQLTAIMGPSGAGKSTLLN-IL 275
L +S + G A+ G SG+GKSTL+N +L
Sbjct: 338 LKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 369
Score = 27.1 bits (61), Expect = 9.1
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 245 LHGISGEFKAGQLTAIMGPSGAGKSTL 271
L I E G+L + G SG+GKS+L
Sbjct: 34 LKNIDVEIPRGKLVVLTGLSGSGKSSL 60
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A
{Staphylococcus aureus}
Length = 219
Score = 37.8 bits (89), Expect = 0.002
Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 3/26 (11%)
Query: 259 AIMGPSGAGKSTLLNILA---GLTYL 281
A+ GP+ AGKST+ +A + Y+
Sbjct: 7 ALDGPAAAGKSTIAKRVASELSMIYV 32
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics
center for infectious disease, ssgcid, ADP, DCMP, D
transferase; 2.00A {Mycobacterium smegmatis} PDB: 3r8c_A
4die_A*
Length = 233
Score = 37.8 bits (89), Expect = 0.002
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 3/26 (11%)
Query: 259 AIMGPSGAGKSTLLNILA---GLTYL 281
A+ GP+G GKS++ LA G YL
Sbjct: 13 AVDGPAGTGKSSVSRGLARALGARYL 38
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA
repair, ABC ATPase, at cassette, DNA damage, DNA
excision; HET: ADP; 3.20A {Geobacillus
stearothermophilus} PDB: 3uwx_A
Length = 972
Score = 38.6 bits (91), Expect = 0.002
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 245 LHGISGEFKAGQLTAIMGPSGAGKSTLLN-IL 275
L +S + G A+ G SG+GKSTL+N +L
Sbjct: 640 LKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 671
Score = 27.9 bits (63), Expect = 5.5
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 245 LHGISGEFKAGQLTAIMGPSGAGKSTL 271
L I E G+L + G SG+GKS+L
Sbjct: 34 LKNIDVEIPRGKLVVLTGLSGSGKSSL 60
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide
monophosphate kinase,, transferase; 1.75A {Escherichia
coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A*
1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Length = 227
Score = 37.8 bits (89), Expect = 0.002
Identities = 12/26 (46%), Positives = 13/26 (50%), Gaps = 3/26 (11%)
Query: 259 AIMGPSGAGKSTLLNILA---GLTYL 281
I GPSGAGK TL +A L
Sbjct: 9 TIDGPSGAGKGTLCKAMAEALQWHLL 34
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair,
nucleotide excision repai hydrolase-DNA complex; HET:
DNA; 2.90A {Thermotoga maritima}
Length = 916
Score = 38.6 bits (91), Expect = 0.002
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 245 LHGISGEFKAGQLTAIMGPSGAGKSTLLN 273
L I E G + G SG+GKS+L+
Sbjct: 600 LKNIDVEIPLGVFVCVTGVSGSGKSSLVM 628
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A
{Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A*
1zny_A* 1znz_A* 1s4q_A 1z8f_A
Length = 207
Score = 36.4 bits (85), Expect = 0.004
Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 253 KAGQLTAIMGPSGAGKSTLLN-ILAGLTYLNFS 284
G++ + GPS GKST++ + + L+FS
Sbjct: 18 AVGRVVVLSGPSAVGKSTVVRCLRERIPNLHFS 50
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus
musculus} SCOP: c.37.1.1
Length = 198
Score = 36.3 bits (85), Expect = 0.005
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 253 KAGQLTAIMGPSGAGKSTLLNIL 275
+ + GPSGAGKSTLL L
Sbjct: 2 AGPRPVVLSGPSGAGKSTLLKKL 24
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural
genomics, PSI, protein struc initiative; 3.20A
{Agrobacterium tumefaciens str} SCOP: c.37.1.25
Length = 191
Score = 36.2 bits (83), Expect = 0.005
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 254 AGQLTAIMGPSGAGKSTLLNILA 276
G + + G G+GKST+ LA
Sbjct: 8 GGNILLLSGHPGSGKSTIAEALA 30
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer,
immunology, signaling protein; HET: GDP; 1.95A {Mus
musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A*
1tq2_A*
Length = 413
Score = 36.6 bits (84), Expect = 0.007
Identities = 16/81 (19%), Positives = 31/81 (38%), Gaps = 20/81 (24%)
Query: 221 PHLASLGLPCPAYHNPADFLNKEILHGISGEFKAGQLT--------------------AI 260
+S ++ +++EIL+ I +AG + A+
Sbjct: 15 DLPSSFTGYFKKFNTGRKIISQEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAV 74
Query: 261 MGPSGAGKSTLLNILAGLTYL 281
G +G+GKS+ +N L G+
Sbjct: 75 TGETGSGKSSFINTLRGIGNE 95
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold,
coiled-coils, ATP binding, DNA bindi MRE11, replication;
HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A*
1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Length = 339
Score = 36.6 bits (84), Expect = 0.007
Identities = 16/29 (55%), Positives = 22/29 (75%), Gaps = 2/29 (6%)
Query: 251 EFKAGQLTAIMGPSGAGKSTLLN-ILAGL 278
EFK G + I+G +G+GKS+LL+ IL GL
Sbjct: 20 EFKEG-INLIIGQNGSGKSSLLDAILVGL 47
Score = 29.2 bits (65), Expect = 1.6
Identities = 7/56 (12%), Positives = 21/56 (37%), Gaps = 2/56 (3%)
Query: 96 GLDSSSCSQCVSLLANLAKQGRTVVATIHTPSALLFEKFDSLYALAKGHCIYRGSI 151
LD + ++++ K+ V+ H L + D + ++ + + +
Sbjct: 284 YLDEERRRKLITIMERYLKKIPQVILVSHDEE--LKDAADHVIRISLENGSSKVEV 337
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga
maritima} PDB: 3qg5_A 3tho_A*
Length = 365
Score = 36.4 bits (84), Expect = 0.007
Identities = 12/22 (54%), Positives = 18/22 (81%), Gaps = 1/22 (4%)
Query: 251 EFKAGQLTAIMGPSGAGKSTLL 272
EF++G +T + GP+GAGKS+L
Sbjct: 20 EFQSG-ITVVEGPNGAGKSSLF 40
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC
transporter ATPase domain-like; HET: DNA ADP; 2.70A
{Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Length = 371
Score = 36.4 bits (84), Expect = 0.009
Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 7/34 (20%)
Query: 239 FLNKEILHGISGEFKAGQLTAIMGPSGAGKSTLL 272
+N I +F+ G + AI+G +G+GKS++
Sbjct: 16 HVNSRI------KFEKG-IVAIIGENGSGKSSIF 42
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for
structural genomics of infec diseases, csgid, putative
guanylate kinase; HET: MSE; 2.05A {Listeria
monocytogenes}
Length = 208
Score = 35.5 bits (83), Expect = 0.009
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 255 GQLTAIMGPSGAGKSTLLNIL 275
G L + GPSG GK T+ +
Sbjct: 8 GLLIVLSGPSGVGKGTVREAV 28
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide-
binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Length = 207
Score = 35.5 bits (83), Expect = 0.009
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 255 GQLTAIMGPSGAGKSTLLNIL 275
G L + GPSG GK T+ +
Sbjct: 6 GLLIVLSGPSGVGKGTVRKRI 26
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold,
coiled-coils, ATPase, exonuclease, endonucle binding,
DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB:
3qkr_A*
Length = 203
Score = 35.4 bits (82), Expect = 0.009
Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
Query: 251 EFKAGQLTAIMGPSGAGKSTLL 272
EFK G + I+G +G+GKS+LL
Sbjct: 20 EFKEG-INLIIGQNGSGKSSLL 40
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication;
1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A*
1us8_A*
Length = 149
Score = 34.7 bits (80), Expect = 0.012
Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
Query: 251 EFKAGQLTAIMGPSGAGKSTLL 272
EFK G + I+G +G+GKS+LL
Sbjct: 20 EFKEG-INLIIGQNGSGKSSLL 40
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase;
2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A*
2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Length = 219
Score = 35.2 bits (82), Expect = 0.013
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 240 LNKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNIL 275
+ + +H G L + PSGAGKS+L+ L
Sbjct: 1 MGSDKIHHHHHHMAQGTLYIVSAPSGAGKSSLIQAL 36
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer,
alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A
{Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A*
2gja_A* 1rfl_A
Length = 172
Score = 34.8 bits (81), Expect = 0.014
Identities = 13/23 (56%), Positives = 14/23 (60%)
Query: 255 GQLTAIMGPSGAGKSTLLNILAG 277
G I G AGKS+LLN LAG
Sbjct: 4 GMKVVIAGRPNAGKSSLLNALAG 26
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural
genomics, structural genomics of pathogenic protozoa
consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Length = 204
Score = 34.8 bits (81), Expect = 0.015
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 253 KAGQLTAIMGPSGAGKSTLLNIL 275
+ GPSG GK TL+ +
Sbjct: 10 ARIPPLVVCGPSGVGKGTLIKKV 32
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics
consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A
{Homo sapiens}
Length = 197
Score = 34.9 bits (81), Expect = 0.017
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 252 FKAGQLTAIMGPSGAGKSTLLNIL 275
F+ + ++G SG G+S + N L
Sbjct: 16 FQGRKTLVLIGASGVGRSHIKNAL 39
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom
consortium, transferase; HET: EPE; 2.18A {Plasmodium
falciparum}
Length = 218
Score = 34.5 bits (80), Expect = 0.020
Identities = 10/23 (43%), Positives = 11/23 (47%)
Query: 253 KAGQLTAIMGPSGAGKSTLLNIL 275
I GPSG GK TL+ L
Sbjct: 21 NNIYPLVICGPSGVGKGTLIKKL 43
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides,
nucleotides, transferase; HET: 5GP; 1.85A {Coxiella
burnetii}
Length = 205
Score = 34.4 bits (80), Expect = 0.022
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 255 GQLTAIMGPSGAGKSTLLNIL 275
L I PSGAGK++L+ L
Sbjct: 7 ANLFIISAPSGAGKTSLVRAL 27
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta
protein., structural genomics, PSI-2, protein structure
initiative; HET: G3D; 2.20A {Bacillus subtilis} PDB:
2axp_A*
Length = 173
Score = 33.9 bits (78), Expect = 0.023
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 259 AIMGPSGAGKSTLLNILA 276
+ GP KST+ L+
Sbjct: 5 ILEGPDCCFKSTVAAKLS 22
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Length = 235
Score = 34.2 bits (79), Expect = 0.030
Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 3/30 (10%)
Query: 243 EILHGISGEFKAGQLTAIMGPSGAGKSTLL 272
+++ G G G A+ G G GK+
Sbjct: 14 KLIQG--G-IPQGFFIALTGEPGTGKTIFS 40
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP;
2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB:
3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A*
3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Length = 525
Score = 34.5 bits (79), Expect = 0.033
Identities = 9/64 (14%), Positives = 20/64 (31%)
Query: 209 HCIYRGSISRLVPHLASLGLPCPAYHNPADFLNKEILHGISGEFKAGQLTAIMGPSGAGK 268
+ + L ++ L + + + G F + G +G GK
Sbjct: 235 YPFTITDHGINIFPLGAMRLTQRSSNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGK 294
Query: 269 STLL 272
+ L+
Sbjct: 295 TLLV 298
Score = 33.0 bits (75), Expect = 0.11
Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 3/30 (10%)
Query: 243 EILHGISGEFKAGQLTAIMGPSGAGKSTLL 272
+I HG G G+ T + G SG GK+
Sbjct: 30 DISHG--G-LPIGRSTLVSGTSGTGKTLFS 56
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization,
acetylation, ATP-binding, nucleotide-binding,
phosphoprotein, transferase; 1.80A {Saccharomyces
cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A
2zzy_A
Length = 186
Score = 33.6 bits (78), Expect = 0.040
Identities = 12/20 (60%), Positives = 13/20 (65%)
Query: 256 QLTAIMGPSGAGKSTLLNIL 275
+ I GPSG GKSTLL L
Sbjct: 2 RPIVISGPSGTGKSTLLKKL 21
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A
{Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A
1ko5_A* 1ko8_A* 1kof_A*
Length = 175
Score = 33.5 bits (76), Expect = 0.042
Identities = 8/17 (47%), Positives = 13/17 (76%)
Query: 260 IMGPSGAGKSTLLNILA 276
+MG SG+GKS + + +A
Sbjct: 13 LMGVSGSGKSAVASEVA 29
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer,
structural genomics; HET: ADP; 2.00A {Pyrococcus
horikoshii}
Length = 247
Score = 33.9 bits (78), Expect = 0.045
Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 3/30 (10%)
Query: 243 EILHGISGEFKAGQLTAIMGPSGAGKSTLL 272
EILHG G + + G G GK+
Sbjct: 14 EILHG--G-IPERNVVLLSGGPGTGKTIFS 40
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP-
binding, hydrolase, magnesium, metal-binding,
nucleotide- binding, potassium; HET: GDP FON; 2.95A
{Chlorobium tepidum} PDB: 3gei_A*
Length = 476
Score = 34.1 bits (79), Expect = 0.045
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 6/42 (14%)
Query: 242 KEILHGISGEFKAGQL------TAIMGPSGAGKSTLLNILAG 277
+ ++ + ++ G++ T I G AGKSTLLN L G
Sbjct: 214 RSEVNRLIDSYQHGRIVSEGVSTVIAGKPNAGKSTLLNTLLG 255
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate
hydrolases fold, S genomics, joint center for structural
genomics, JCSG; HET: MSE; 1.70A {Chloroflexus
aurantiacus}
Length = 193
Score = 33.4 bits (76), Expect = 0.045
Identities = 10/28 (35%), Positives = 12/28 (42%), Gaps = 3/28 (10%)
Query: 257 LTAIMGPSGAGKSTLLNILA---GLTYL 281
L + G GK+TL LA L L
Sbjct: 7 LIIVTGHPATGKTTLSQALATGLRLPLL 34
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure
initiati YORK structural genomics research consortium,
nysgrc; 2.20A {Sinorhizobium meliloti}
Length = 202
Score = 33.5 bits (76), Expect = 0.049
Identities = 8/17 (47%), Positives = 13/17 (76%)
Query: 260 IMGPSGAGKSTLLNILA 276
+MG SG+GKS++ +A
Sbjct: 23 VMGVSGSGKSSVGEAIA 39
>2vli_A Antibiotic resistance protein; transferase, tunicamycin,
phosphotransferase; 1.95A {Deinococcus radiodurans}
Length = 183
Score = 33.4 bits (76), Expect = 0.050
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 260 IMGPSGAGKSTLLNILAGL 278
I GP G GK+ + L
Sbjct: 10 INGPFGVGKTHTAHTLHER 28
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like
domain, protein binding; 1.31A {Homo sapiens} SCOP:
c.37.1.1
Length = 180
Score = 33.2 bits (77), Expect = 0.053
Identities = 5/21 (23%), Positives = 10/21 (47%)
Query: 255 GQLTAIMGPSGAGKSTLLNIL 275
+ ++G G G+ + N L
Sbjct: 5 RKTLVLLGAHGVGRRHIKNTL 25
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function;
HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Length = 251
Score = 33.3 bits (76), Expect = 0.056
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 3/30 (10%)
Query: 243 EILHGISGEFKAGQLTAIMGPSGAGKSTLL 272
E++ G G F G + G +G GK+T
Sbjct: 21 ELIEG--G-FPEGTTVLLTGGTGTGKTTFA 47
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding,
HYDR magnesium, metal-binding, nucleotide-binding,
potassium, TR processing; HET: GDP FON; 3.20A {Nostoc
SP}
Length = 462
Score = 33.6 bits (78), Expect = 0.058
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 6/42 (14%)
Query: 242 KEILHGISGEFKAGQL------TAIMGPSGAGKSTLLNILAG 277
+ + G+L AI+G GKS+LLN +
Sbjct: 205 AAEISQLLATKDKGELLRTGLKVAIVGRPNVGKSSLLNAWSQ 246
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding,
hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1
c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Length = 482
Score = 33.7 bits (78), Expect = 0.060
Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 6/42 (14%)
Query: 242 KEILHGISGEFKAGQL------TAIMGPSGAGKSTLLNILAG 277
KE L + AG L I+G GKSTLLN L
Sbjct: 224 KEKLTEELKKADAGILLNRGLRMVIVGKPNVGKSTLLNRLLN 265
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Length = 347
Score = 33.4 bits (77), Expect = 0.061
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 255 GQLTAIMGPSGAGKSTLLNILA 276
GQ I SG GKSTLL ++
Sbjct: 71 GQRIGIFAGSGVGKSTLLGMIC 92
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography,
emerald biostructures, ATP-binding, cytoplasm,
nucleotide-binding; HET: 5GP; 1.95A {Anaplasma
phagocytophilum}
Length = 231
Score = 33.3 bits (77), Expect = 0.062
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 253 KAGQLTAIMGPSGAGKSTLLNIL 275
G + + PSG GK+T+ N L
Sbjct: 25 SVGVILVLSSPSGCGKTTVANKL 47
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein,
feedback inhibition, deoxyribonucleoside kinase, salvage
pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP:
c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A*
2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A*
1zm7_A* 1zmx_A*
Length = 230
Score = 33.1 bits (75), Expect = 0.071
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 259 AIMGPSGAGKSTLLNILA 276
I G G+GK+T LN
Sbjct: 24 LIEGNIGSGKTTYLNHFE 41
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA,
30S ribosome ASSE GTP-binding, nucleotide-binding; HET:
GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Length = 308
Score = 33.2 bits (77), Expect = 0.080
Identities = 14/27 (51%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 251 EFKAGQLTAIMGPSGAGKSTLLNILAG 277
K G AI+G GKSTLLN L G
Sbjct: 7 HMKVG-YVAIVGKPNVGKSTLLNNLLG 32
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like,
hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8
d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Length = 301
Score = 32.8 bits (76), Expect = 0.088
Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 251 EFKAGQLTAIMGPSGAGKSTLLNILAG 277
+ G AI+G GKSTLLN L G
Sbjct: 5 KSYCG-FIAIVGRPNVGKSTLLNKLLG 30
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase;
HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A*
2jas_A*
Length = 205
Score = 32.7 bits (74), Expect = 0.089
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 259 AIMGPSGAGKSTLLNILA 276
AI G GAGKST+ ++
Sbjct: 4 AIFGTVGAGKSTISAEIS 21
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 33.3 bits (76), Expect = 0.093
Identities = 4/24 (16%), Positives = 11/24 (45%), Gaps = 1/24 (4%)
Query: 260 IMGPSGAGKSTLLNILAG-LTYLN 282
++G +G GK+ + + +
Sbjct: 928 LVGKAGCGKTATWKTVIDAMAIFD 951
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P;
hydrolase, type IV secretion, conjugation; 2.35A
{Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Length = 392
Score = 33.0 bits (75), Expect = 0.097
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 258 TAIMGPSGAGKSTLLNILA 276
I+ GAGKS +L
Sbjct: 38 WTILAKPGAGKSFTAKMLL 56
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system
kinase, STRU genomics, joint center for structural
genomics, JCSG; 1.95A {Silicibacter SP}
Length = 208
Score = 32.4 bits (74), Expect = 0.10
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 238 DFLNKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
L + +L + QL A+ G G+GKSTL N LA
Sbjct: 5 AALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAA 45
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase,
antibiotic resistance, phosphorylation, mononucleoti
binding fold; HET: ATP; 2.50A {Streptomyces venezuelae}
SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A*
1qhy_A*
Length = 178
Score = 32.0 bits (72), Expect = 0.11
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 254 AGQLTAIMGPSGAGKSTLLNILAGL 278
++ + G S AGKS ++ L +
Sbjct: 2 TTRMIILNGGSSAGKSGIVRCLQSV 26
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein
struct initiative, northeast structural genomics
consortium, NESG, function; 2.40A {Bacillus halodurans}
SCOP: c.37.1.25
Length = 189
Score = 32.2 bits (73), Expect = 0.12
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 256 QLTAIMGPSGAGKSTLLNILA 276
+L I GP+G GKST LA
Sbjct: 3 KLYIITGPAGVGKSTTCKRLA 23
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural
changes, replication; 1.95A {Escherichia coli} SCOP:
c.37.1.11 PDB: 1g8y_A 1olo_A
Length = 279
Score = 32.4 bits (73), Expect = 0.13
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 254 AGQLTAIMGPSGAGKSTLLNILA 276
AG + A++ P GAGKS L LA
Sbjct: 29 AGTVGALVSPGGAGKSMLALQLA 51
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A
{Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Length = 695
Score = 33.0 bits (74), Expect = 0.13
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 259 AIMGPSGAGKSTLLNILAGLTYL 281
++G GKST LN L G L
Sbjct: 73 LVLGDMKRGKSTFLNALIGENLL 95
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus
abyssi}
Length = 350
Score = 32.4 bits (73), Expect = 0.13
Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 233 YHNPADFLN-KEILHGISGEFKAGQLTAIMGPSGAGKSTLLN 273
D + +E + + LT ++G GKS+LL
Sbjct: 8 KTRREDIFDREEESRKLEESLENYPLTLLLGIRRVGKSSLLR 49
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta
structure, hydrolase; HET: ADP; 2.40A {Salmonella
typhimurium}
Length = 438
Score = 32.3 bits (74), Expect = 0.15
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 255 GQLTAIMGPSGAGKSTLLNILA 276
GQ + SG GKS LL ++A
Sbjct: 157 GQRMGLFAGSGVGKSVLLGMMA 178
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex,
transferase; HET: DTP; 2.80A {Homo sapiens} SCOP:
c.37.1.1
Length = 241
Score = 32.0 bits (72), Expect = 0.16
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 259 AIMGPSGAGKSTLLNILA 276
+I G GKST + +L
Sbjct: 6 SIEGNIAVGKSTFVKLLT 23
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function
initiative, EFI, STRU genomics, transferase; 1.60A
{Janibacter SP}
Length = 200
Score = 31.6 bits (71), Expect = 0.17
Identities = 8/17 (47%), Positives = 14/17 (82%)
Query: 260 IMGPSGAGKSTLLNILA 276
+MG SG+GK+T+ + +A
Sbjct: 34 VMGVSGSGKTTIAHGVA 50
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET:
GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Length = 270
Score = 31.8 bits (72), Expect = 0.19
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 259 AIMGPSGAGKSTLLNILAG 277
+MG G GKS+ +N + G
Sbjct: 43 LVMGKGGVGKSSTVNSIIG 61
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL
helix motif, transcription regulator; 3.20A
{Streptococcus pneumoniae}
Length = 253
Score = 31.8 bits (71), Expect = 0.20
Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 238 DFLNKEILHGISGEFKAGQLTAIM--GPSGAGKSTLLNILAGLTYLNF 283
L + + G+ + Q AI+ G SGAGK+T+ I N
Sbjct: 13 HALARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTIHRIKQKEFQGNI 60
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI,
protein structure initiative; 1.90A {Geobacillus
stearothermophilus} SCOP: c.37.1.6
Length = 201
Score = 31.5 bits (72), Expect = 0.20
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 259 AIMGPSGAGKSTLLNILA 276
I G S +GK+TL N L+
Sbjct: 26 GIDGLSRSGKTTLANQLS 43
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC,
cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo
sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B*
2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A*
2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A*
2zi7_B* 2zia_A* 3kfx_A* ...
Length = 263
Score = 31.7 bits (71), Expect = 0.23
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 259 AIMGPSGAGKSTLLNILA 276
+I G AGKST +NIL
Sbjct: 28 SIEGNIAAGKSTFVNILK 45
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote
initiative, RSGI, structural genomics, hydrolase; HET:
GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8
d.52.3.1
Length = 301
Score = 31.7 bits (73), Expect = 0.26
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 251 EFKAGQLTAIMGPSGAGKSTLLNILAG 277
+ +G AI+G GKSTLLN L G
Sbjct: 4 KTYSG-FVAIVGKPNVGKSTLLNNLLG 29
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Length = 181
Score = 30.4 bits (68), Expect = 0.37
Identities = 8/30 (26%), Positives = 10/30 (33%), Gaps = 1/30 (3%)
Query: 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTL 271
K+ H I G + GKS L
Sbjct: 4 KQTWHANFLVI-DKMGVLITGEANIGKSEL 32
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning;
2.20A {Escherichia coli} SCOP: c.37.1.12
Length = 227
Score = 31.0 bits (69), Expect = 0.37
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 5/36 (13%)
Query: 255 GQLTAIMGPSGAGKSTLLN-----ILAGLTYLNFSK 285
+T + G +GAGKST + ++ LT L+F
Sbjct: 27 ELVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRN 62
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium
tuberculosis} PDB: 3md0_A* 3nxs_A* 3tk1_A*
Length = 355
Score = 31.0 bits (70), Expect = 0.40
Identities = 22/115 (19%), Positives = 32/115 (27%), Gaps = 24/115 (20%)
Query: 162 GLPCPAYHNPADFPNLAKQGRTVVATIHTPSALLFEKFDSLYALAKGHCIYRGSISRLVP 221
G P + TV A+ G R ++ R +
Sbjct: 10 GTLEAQTQGPGSMMAASHDDDTVDGLAT--------------AVRGGD---RAALPRAIT 52
Query: 222 HLASLGLPCPAYHNPADFLNKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILA 276
+ S P + A L +L + G I G G GKST + L
Sbjct: 53 LVESTR---PDHREQAQQLLLRLLPDSGNAHRVG----ITGVPGVGKSTAIEALG 100
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter
sphaeroides} SCOP: c.37.1.6
Length = 290
Score = 30.8 bits (69), Expect = 0.41
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 259 AIMGPSGAGKSTLLNILAGL 278
++ G SGAG ST+ + +
Sbjct: 9 SVTGSSGAGTSTVKHTFDQI 28
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase,
hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB:
2oaq_1
Length = 511
Score = 31.3 bits (71), Expect = 0.41
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 260 IMGPSGAGKSTLLNILAGL 278
++G + +GK+T LN +
Sbjct: 265 VVGETASGKTTTLNAIMMF 283
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 31.4 bits (71), Expect = 0.44
Identities = 40/183 (21%), Positives = 59/183 (32%), Gaps = 49/183 (26%)
Query: 106 VSLLANLAKQGRTVVATIHTPSALLFEKFDSLYAL--AKGHCIY-----RGS---ISRLV 155
+L L + G VV T S + + + S+YA AKG + +GS + L+
Sbjct: 491 AEVLQGLLQGGAKVVVTTSRFSKQVTDYYQSIYAKYGAKGSTLIVVPFNQGSKQDVEALI 550
Query: 156 PHL------ASLGLPCPAYHNPADFPNLAKQGRTVVATIHTPSALLFEKFDSLYALAKGH 209
+ LG P F + +QG + E DS A H
Sbjct: 551 EFIYDTEKNGGLGWD-LDAIIP--FAAIPEQGIEL------------EHIDSKSEFA--H 593
Query: 210 CIYRGSISRLVPHLASLGLPCPAYHNPADFLNKEIL-----HGISG------EFKAGQLT 258
I +I R++ + PA IL HG G E K L
Sbjct: 594 RIMLTNILRMMGCVKKQKSARGIETRPAQV----ILPMSPNHGTFGGDGMYSESKLS-LE 648
Query: 259 AIM 261
+
Sbjct: 649 TLF 651
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC,
coiled coil, GTP- binding, nucleotide-binding, immune
system; HET: GDP; 2.15A {Homo sapiens}
Length = 239
Score = 30.3 bits (68), Expect = 0.53
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 259 AIMGPSGAGKSTLLNILAG 277
++G +GAGKS N + G
Sbjct: 33 VLVGKTGAGKSATGNSILG 51
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP;
1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A*
2j3e_A*
Length = 262
Score = 30.6 bits (69), Expect = 0.54
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 259 AIMGPSGAGKSTLLNILAG 277
++G G GKS+ +N L G
Sbjct: 40 LVLGKGGVGKSSTVNSLIG 58
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome
condensation, condensin, SMC, N subunit, ABC-type
ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus
ducreyi} PDB: 3euk_A*
Length = 483
Score = 30.6 bits (68), Expect = 0.58
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 5/36 (13%)
Query: 255 GQLTAIMGPSGAGKSTLLN-----ILAGLTYLNFSK 285
+T + G +GAGKST + ++ LT LNF
Sbjct: 29 ELVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRN 64
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG,
structural genomics, midwest center for structural
genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB:
3h0k_A
Length = 179
Score = 29.8 bits (67), Expect = 0.60
Identities = 9/28 (32%), Positives = 12/28 (42%), Gaps = 2/28 (7%)
Query: 259 AIMGPSGAGKSTLLNILA--GLTYLNFS 284
I G G+GKS +L G + S
Sbjct: 5 LITGMPGSGKSEFAKLLKERGAKVIVMS 32
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure
initiative, PSI, SGPP structural genomics of pathogenic
protozoa consortium; HET: ADP; 1.70A {Leishmania major}
SCOP: c.37.1.1
Length = 184
Score = 30.1 bits (67), Expect = 0.61
Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 4/31 (12%)
Query: 259 AIMGPSGAGKSTLLNILA----GLTYLNFSK 285
I G G GK+++ ++A G +L K
Sbjct: 14 LITGTPGTGKTSMAEMIAAELDGFQHLEVGK 44
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins
(A/B), protein binding, transferase, phosphotransferase;
HET: ADP; 1.76A {Homo sapiens} PDB: 3iik_A 3iil_A*
3iim_A* 1rkb_A
Length = 180
Score = 29.6 bits (66), Expect = 0.73
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 3/30 (10%)
Query: 259 AIMGPSGAGKSTLLNILA---GLTYLNFSK 285
+ G G GK+TL LA GL Y+N
Sbjct: 15 LLTGTPGVGKTTLGKELASKSGLKYINVGD 44
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation,
GTP-binding domain, maturation enzyme, oxidoreductase;
2.99A {Thermotoga neapolitana}
Length = 423
Score = 30.4 bits (69), Expect = 0.78
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 259 AIMGPSGAGKSTLLNILAG 277
+ G GKS+ +N L G
Sbjct: 38 VVAGRRNVGKSSFMNALVG 56
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC,
mitosis, GDP, C cycle, cell division, GTP-binding,
nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB:
2qa5_A* 3ftq_A*
Length = 301
Score = 30.2 bits (67), Expect = 0.81
Identities = 10/16 (62%), Positives = 13/16 (81%)
Query: 260 IMGPSGAGKSTLLNIL 275
++G SG GKSTL+N L
Sbjct: 23 VVGESGLGKSTLINSL 38
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein
structure initiative, NEW YORK SGX research for
structural genomics; 1.80A {Escherichia coli} SCOP:
c.37.1.10
Length = 341
Score = 30.2 bits (68), Expect = 0.81
Identities = 10/35 (28%), Positives = 13/35 (37%)
Query: 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILA 276
++L I + G GAGKST L
Sbjct: 43 TQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFG 77
>3kta_A Chromosome segregation protein SMC; structural maintenance of
chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A,
transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB:
1xex_A* 1xew_X*
Length = 182
Score = 29.5 bits (67), Expect = 0.83
Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 4/24 (16%)
Query: 251 EFKAGQLTAIMGPSGAGKSTLLNI 274
F G TAI+G +G+GKS NI
Sbjct: 23 PFSKG-FTAIVGANGSGKS---NI 42
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium,
SGC, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB:
2q3f_A*
Length = 196
Score = 29.6 bits (66), Expect = 0.86
Identities = 5/16 (31%), Positives = 11/16 (68%)
Query: 260 IMGPSGAGKSTLLNIL 275
+MG +GKS++ ++
Sbjct: 25 LMGLRRSGKSSIQKVV 40
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic
subunit]; helicase, flavivirus, DEAD-BOX, ATPase,
rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP:
c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Length = 440
Score = 30.2 bits (68), Expect = 0.89
Identities = 8/24 (33%), Positives = 10/24 (41%)
Query: 249 SGEFKAGQLTAIMGPSGAGKSTLL 272
S K G T + GAGK+
Sbjct: 2 SHMLKKGMTTVLDFHPGAGKTRRF 25
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein
transport, G protein, proline isomerization, circular
permutation; 2.20A {Saccharomyces cerevisiae}
Length = 193
Score = 29.3 bits (66), Expect = 0.92
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 260 IMGPSGAGKSTLLNILAG 277
I GP +GK++LL +L
Sbjct: 53 IAGPQNSGKTSLLTLLTT 70
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET:
MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10
PDB: 2qm7_A*
Length = 337
Score = 29.7 bits (67), Expect = 0.92
Identities = 8/35 (22%), Positives = 16/35 (45%)
Query: 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILA 276
++++ + + I G G GKST ++ L
Sbjct: 42 RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALG 76
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication,
viral replication, nucleotide-binding; 2.10A {Kokobera
virus} PDB: 2v6j_A
Length = 431
Score = 29.8 bits (67), Expect = 0.94
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 255 GQLTAIMGPSGAGKSTLL 272
+LT + GAGK+ +
Sbjct: 2 RELTVLDLHPGAGKTRRV 19
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome
segregation, cell adhesion, kleisin, MIT cell cycle;
HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP:
c.37.1.12
Length = 430
Score = 30.0 bits (68), Expect = 0.96
Identities = 10/24 (41%), Positives = 15/24 (62%), Gaps = 3/24 (12%)
Query: 251 EFKAGQLTAIMGPSGAGKSTLLNI 274
F T+I+GP+G+GKS N+
Sbjct: 22 GFGESNFTSIIGPNGSGKS---NM 42
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein;
HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Length = 274
Score = 29.7 bits (66), Expect = 0.99
Identities = 10/16 (62%), Positives = 13/16 (81%)
Query: 260 IMGPSGAGKSTLLNIL 275
++G SG GKSTL+N L
Sbjct: 13 VVGESGLGKSTLINSL 28
>1nrj_B SR-beta, signal recognition particle receptor beta subunit;
transmembrane, endoplasmic reticulum, GTP-binding; HET:
GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Length = 218
Score = 29.3 bits (66), Expect = 1.0
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 260 IMGPSGAGKSTLLNILAG 277
I GP +GK++LL +L
Sbjct: 17 IAGPQNSGKTSLLTLLTT 34
>3pvs_A Replication-associated recombination protein A; maintenance of
genome stability Pro recombination; 2.50A {Escherichia
coli}
Length = 447
Score = 29.8 bits (68), Expect = 1.1
Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 252 FKAGQLTAIM--GPSGAGKSTLLNILAGLTYLNF 283
+AG L +++ GP G GK+TL ++A +
Sbjct: 45 IEAGHLHSMILWGPPGTGKTTLAEVIARYANADV 78
>2fh5_B SR-beta, signal recognition particle receptor beta subunit;
endomembrane targeting, GTPase, GAP, longin domain,
SEDL, transport protein; HET: GTP; 2.45A {Mus musculus}
SCOP: c.37.1.8 PDB: 2go5_2
Length = 214
Score = 29.3 bits (66), Expect = 1.1
Identities = 5/16 (31%), Positives = 8/16 (50%)
Query: 260 IMGPSGAGKSTLLNIL 275
+G +GK+ L L
Sbjct: 12 FVGLCDSGKTLLFVRL 27
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop,
rossman fold, AAA+, photosynthesis, metal transport;
2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB:
2x31_G
Length = 350
Score = 29.7 bits (67), Expect = 1.1
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 260 IMGPSGAGKSTLLNILAGL 278
+ G G GKST + LA L
Sbjct: 50 VFGDRGTGKSTAVRALAAL 68
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1,
nicotinic acid riboside kinase activity, NAD
biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB:
2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Length = 207
Score = 29.0 bits (65), Expect = 1.2
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 259 AIMGPSGAGKSTLLNILA 276
I G + +GK+TL L
Sbjct: 25 GISGVTNSGKTTLAKNLQ 42
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels,
nucleotide-binding, nucleotide binding protein; 2.00A
{Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A
3kxk_A
Length = 364
Score = 29.5 bits (67), Expect = 1.2
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 259 AIMGPSGAGKSTLLNILAG 277
I+G + +GK++L N L G
Sbjct: 183 GIVGYTNSGKTSLFNSLTG 201
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion,
hydrolas binding complex; 2.40A {Helicobacter pylori}
SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Length = 330
Score = 29.3 bits (66), Expect = 1.4
Identities = 11/104 (10%), Positives = 24/104 (23%), Gaps = 28/104 (26%)
Query: 175 PNLAKQGRTVVATIHTPSALLFEKFDSLYALAKGHCIYRGSISRLVPHLASLGLPCPAYH 234
+ T+ +I PS + +
Sbjct: 119 SPVTVNDETISISIRIPSKTTY----PHSFFEEQGFYNLLDNKE---------------- 158
Query: 235 NPADFLNKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
+ I G+ + G +G+GK+T + +
Sbjct: 159 QAISAIKDGI--------AIGKNVIVCGGTGSGKTTYIKSIMEF 194
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex,
transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Length = 460
Score = 29.4 bits (65), Expect = 1.4
Identities = 13/76 (17%), Positives = 24/76 (31%), Gaps = 5/76 (6%)
Query: 201 SLYALAKGHCIYRGSISRLVPHLASLGLPCPAYHNPADFLNKEILHGISGEFKAGQLTAI 260
+YA+ + +++ +N L K + G I
Sbjct: 89 PIYAVEETELLWKCPDLTTNTITVKPNHTMKYIYNLHFMLEKIRMSN-----FEGPRVVI 143
Query: 261 MGPSGAGKSTLLNILA 276
+G S GK++L L
Sbjct: 144 VGGSQTGKTSLSRTLC 159
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport
protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo
sapiens}
Length = 349
Score = 29.1 bits (65), Expect = 1.5
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 260 IMGPSGAGKSTLLNILA 276
+ GP GAGKST +
Sbjct: 79 LSGPPGAGKSTFIEYFG 95
>1e69_A Chromosome segregation SMC protein; structural maintenance of
chromosomes, coiled coil; 3.1A {Thermotoga maritima}
SCOP: c.37.1.12
Length = 322
Score = 29.2 bits (66), Expect = 1.6
Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 4/25 (16%)
Query: 251 EFKAGQLTAIMGPSGAGKSTLLNIL 275
F +TAI+GP+G+GKS NI+
Sbjct: 21 GFSDR-VTAIVGPNGSGKS---NII 41
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR;
HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB:
1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Length = 262
Score = 28.9 bits (64), Expect = 1.7
Identities = 6/23 (26%), Positives = 11/23 (47%), Gaps = 2/23 (8%)
Query: 253 KAGQLTAIMGPSGAGKSTLLNIL 275
+ +G +G+GK+TL
Sbjct: 14 SMIVV--FVGTAGSGKTTLTGEF 34
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 28.8 bits (64), Expect = 1.8
Identities = 8/16 (50%), Positives = 14/16 (87%)
Query: 260 IMGPSGAGKSTLLNIL 275
+MG SG+GKS++ +I+
Sbjct: 8 LMGRSGSGKSSMRSII 23
>2fna_A Conserved hypothetical protein; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus}
SCOP: a.4.5.11 c.37.1.20
Length = 357
Score = 28.9 bits (64), Expect = 1.8
Identities = 9/41 (21%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 234 HNPADFLN-KEILHGISGEFKAGQLTAIMGPSGAGKSTLLN 273
N DF + ++ + + G +T ++G GKS+++
Sbjct: 10 DNRKDFFDREKEIEKLKGLR--APITLVLGLRRTGKSSIIK 48
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET:
GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Length = 447
Score = 29.2 bits (64), Expect = 1.9
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 259 AIMGPSGAGKSTLLNILAGLTYLNFSKC 286
++ G GKS L++ + Y S
Sbjct: 71 SVAGAFRKGKSFLMDFMLRYMYNQESVD 98
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A
{Sulfolobus acidocaldarius} SCOP: c.37.1.1
Length = 194
Score = 28.5 bits (63), Expect = 1.9
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 257 LTAIMGPSGAGKSTLLNILA 276
+ + G G GKST+L +
Sbjct: 3 IGIVTGIPGVGKSTVLAKVK 22
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane,
nucleotide-binding, RNA replication, transmembrane,
viral protein; 1.80A {Japanese encephalitis virus} PDB:
2v8o_A 2qeq_A
Length = 459
Score = 29.0 bits (65), Expect = 2.0
Identities = 6/32 (18%), Positives = 15/32 (46%)
Query: 241 NKEILHGISGEFKAGQLTAIMGPSGAGKSTLL 272
+++ G + Q+T + G+GK+ +
Sbjct: 7 GQQMGRGSPNMLRKRQMTVLDLHPGSGKTRKI 38
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding,
nucleoside kinase, nucleotide-binding; 2.50A {Homo
sapiens} PDB: 2uvq_A*
Length = 245
Score = 28.6 bits (64), Expect = 2.1
Identities = 5/18 (27%), Positives = 10/18 (55%)
Query: 259 AIMGPSGAGKSTLLNILA 276
+ G + +GKST+ +
Sbjct: 29 GVSGGTASGKSTVCEKIM 46
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate
metabolism, magnesium, metal-binding, multifunctional
enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A
1kkm_A*
Length = 205
Score = 28.4 bits (63), Expect = 2.1
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 239 FLNKEILHGISGEFKAGQLTAIMGPSGAGKSTL 271
+ +HG+ + G I G SG GKS
Sbjct: 19 LAERRSMHGVLVDIY-GLGVLITGDSGVGKSET 50
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop,
transferase; HET: ADP; 2.33A {Enterobacteria phage T4}
SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A*
2ia5_A
Length = 301
Score = 28.5 bits (63), Expect = 2.3
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 256 QLTAIMGPSGAGKSTL 271
++ +G G+GKST
Sbjct: 3 KIILTIGCPGSGKSTW 18
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P;
2.25A {Thermus thermophilus} PDB: 3asy_A*
Length = 211
Score = 28.4 bits (64), Expect = 2.3
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 259 AIMGPSGAGKSTLLNILA 276
I G + +GK+TL LA
Sbjct: 10 GIAGGTASGKTTLAQALA 27
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD,
transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP:
c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Length = 252
Score = 28.3 bits (63), Expect = 2.3
Identities = 4/18 (22%), Positives = 10/18 (55%)
Query: 259 AIMGPSGAGKSTLLNILA 276
+ G + +GKS++ +
Sbjct: 26 GVSGGTASGKSSVCAKIV 43
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A
{Brucella suis}
Length = 361
Score = 28.4 bits (64), Expect = 2.4
Identities = 23/110 (20%), Positives = 37/110 (33%), Gaps = 24/110 (21%)
Query: 175 PNLAKQGRTVVATIHTPSALLFEKFDSLYALAKGHCIYRGSISRLVPHLASLG------L 228
P + G T+ TI PS +L A+ +G + P SL L
Sbjct: 107 PPACEHG-TISVTIRKPSFTRR----TLEDYAQ-----QGFFKHVRPMSKSLTPFEQELL 156
Query: 229 PCPAYHNPADFLNKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAGL 278
+ FL + + + G +G+GK+TL+ L
Sbjct: 157 ALKEAGDYMSFLRRAVQLERV--------IVVAGETGSGKTTLMKALMQE 198
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid
herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A*
1p75_A*
Length = 334
Score = 28.5 bits (63), Expect = 2.5
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 259 AIMGPSGAGKSTLLNILA 276
+ G G GKST ++A
Sbjct: 11 YLDGVYGIGKSTTGRVMA 28
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 331
Score = 28.5 bits (63), Expect = 2.5
Identities = 5/16 (31%), Positives = 10/16 (62%)
Query: 260 IMGPSGAGKSTLLNIL 275
+MG GKS++ ++
Sbjct: 4 LMGVRRCGKSSICKVV 19
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 28.7 bits (64), Expect = 2.5
Identities = 7/24 (29%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Query: 260 IMGPSGAGKSTLLNILAG-LTYLN 282
++GPSG GK+T + + ++
Sbjct: 911 MVGPSGGGKTTSWEVYLEAIEQVD 934
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding,
viral nucleoprotein, endoplasmic reticulum, helicase,
hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A*
2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A
2bhr_A
Length = 451
Score = 28.7 bits (64), Expect = 2.8
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 252 FKAGQLTAIMGPSGAGKSTLL 272
F+ +LT + GAGK+ +
Sbjct: 16 FRKKRLTIMDLHPGAGKTKRI 36
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA,
national P protein structural and functional analyses;
HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Length = 190
Score = 28.0 bits (63), Expect = 2.8
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 259 AIMGPSGAGKSTLLNILAG 277
G S GKSTL+ L G
Sbjct: 5 IFAGRSNVGKSTLIYRLTG 23
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292;
mixed alpha-beta protein, rossman fold, signaling
protein, transferase; 1.40A {Aquifex aeolicus} SCOP:
c.37.1.11
Length = 178
Score = 28.1 bits (62), Expect = 2.8
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 260 IMGPSGAGKSTLLNILA 276
I G G GK+TL+ +
Sbjct: 5 ITGEPGVGKTTLVKKIV 21
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding,
chromatin regulator, growth regulation, hydrolase,
nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo
sapiens} PDB: 2xsz_A*
Length = 456
Score = 28.4 bits (63), Expect = 2.8
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 242 KEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILAG 277
I+ I + AG+ + GP G GK+ L +A
Sbjct: 50 GVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQ 85
>2cvh_A DNA repair and recombination protein RADB; filament formation,
homologous recombination, ATPase domain,
hyperthermophIle; HET: DNA; 2.20A {Thermococcus
kodakarensis} PDB: 2cvf_A*
Length = 220
Score = 27.9 bits (63), Expect = 2.9
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 250 GEFKAGQLTAIMGPSGAGKSTLL 272
G F G LT + GP +GK+TL
Sbjct: 15 GGFAPGVLTQVYGPYASGKTTLA 37
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function;
HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Length = 359
Score = 28.5 bits (63), Expect = 3.0
Identities = 3/20 (15%), Positives = 8/20 (40%)
Query: 257 LTAIMGPSGAGKSTLLNILA 276
TA++ G + + +
Sbjct: 121 CTAVVARGGTANAIRIAAVD 140
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A
{Enterobacteria phage T4} SCOP: c.37.1.1
Length = 181
Score = 27.8 bits (62), Expect = 3.0
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 257 LTAIMGPSGAGKSTL 271
+ +G G+GKST
Sbjct: 4 IILTIGCPGSGKSTW 18
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex,
membrane protein, endocytosis; HET: ANP; 3.10A {Mus
musculus}
Length = 550
Score = 28.6 bits (63), Expect = 3.0
Identities = 5/32 (15%), Positives = 11/32 (34%)
Query: 250 GEFKAGQLTAIMGPSGAGKSTLLNILAGLTYL 281
+F + + G GK++ + L
Sbjct: 60 ADFDGKPMVLVAGQYSTGKTSFIQYLLEQEVP 91
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 27.8 bits (62), Expect = 3.5
Identities = 6/24 (25%), Positives = 9/24 (37%)
Query: 260 IMGPSGAGKSTLLNILAGLTYLNF 283
GP +GK+T L +
Sbjct: 19 YYGPGLSGKTTNLKWIYSKVPEGR 42
>3o0q_A Ribonucleoside-diphosphate reductase; alpha/beta barrel,
adenosylcobalamin dependent, ribonucle reductase; HET:
TTP GDP ADN; 1.80A {Thermotoga maritima} PDB: 1xjf_A*
1xjg_A* 1xje_A* 1xjk_A* 1xjm_A* 1xjn_A* 3o0n_A* 3o0o_A*
1xjj_A*
Length = 644
Score = 28.4 bits (64), Expect = 3.5
Identities = 8/32 (25%), Positives = 15/32 (46%), Gaps = 5/32 (15%)
Query: 122 TIHTPSALLFEKFDSLYALA-----KGHCIYR 148
TI+ P + + ++Y A +G +YR
Sbjct: 598 TINMPQSATVDDVLNVYLEALRTNVRGITVYR 629
Score = 28.4 bits (64), Expect = 3.5
Identities = 8/32 (25%), Positives = 15/32 (46%), Gaps = 5/32 (15%)
Query: 187 TIHTPSALLFEKFDSLYALA-----KGHCIYR 213
TI+ P + + ++Y A +G +YR
Sbjct: 598 TINMPQSATVDDVLNVYLEALRTNVRGITVYR 629
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and
beta protein; HET: GSP; 1.90A {Methanocaldococcus
jannaschii} PDB: 2hf8_A*
Length = 226
Score = 27.6 bits (62), Expect = 3.6
Identities = 9/34 (26%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 241 NKEILHGISGEFKAGQLTA--IMGPSGAGKSTLL 272
NK + + A MG G+GK+ L+
Sbjct: 22 NKRLADKNRKLLNKHGVVAFDFMGAIGSGKTLLI 55
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD,
CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A*
1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Length = 806
Score = 27.8 bits (62), Expect = 4.3
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 262 GPSGAGKSTLLNILAGLTYLNF 283
GP G GK+ + +A T F
Sbjct: 245 GPPGTGKTLIARAVANETGAFF 266
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal
domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Length = 261
Score = 27.6 bits (62), Expect = 4.9
Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 15/57 (26%)
Query: 216 ISRLVPHLASLGLPCPAYHNPADFLNKEILHGISGEFKAGQLTAIMGPSGAGKSTLL 272
+ +P LGLP + + + K G L + GP+G+GKST +
Sbjct: 1 MPAEIPEFKKLGLP-------------DKVLELC-HRKMG-LILVTGPTGSGKSTTI 42
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB);
structural genomics, PSI, protein structure initiative;
2.10A {Archaeoglobus fulgidus}
Length = 171
Score = 27.3 bits (60), Expect = 4.9
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 259 AIMGPSGAGKSTLLNIL 275
+I+G S +GK+TL+ +
Sbjct: 6 SIVGTSDSGKTTLITRM 22
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis,
nucleotide-B transferase; HET: MSE; 2.01A
{Staphylococcus aureus}
Length = 219
Score = 27.3 bits (61), Expect = 5.1
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 252 FKAGQLTAIMGPSGAGKSTLL 272
+ +G + I G +GKS L
Sbjct: 25 YHSGWIECITGSMFSGKSEEL 45
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem
G-domains, ligand binding protein; HET: GDP; 1.90A
{Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Length = 439
Score = 27.5 bits (62), Expect = 5.2
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 259 AIMGPSGAGKSTLLNILAG 277
AI+G GKSTL N +
Sbjct: 184 AIVGRPNVGKSTLFNAILN 202
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding
motif, ATP- binding, nucleotide-binding, transferase;
HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB:
3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Length = 260
Score = 27.5 bits (61), Expect = 5.2
Identities = 9/20 (45%), Positives = 10/20 (50%)
Query: 257 LTAIMGPSGAGKSTLLNILA 276
L + G G GKST LA
Sbjct: 6 LIILTGLPGVGKSTFSKNLA 25
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP;
1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A*
2wwi_A*
Length = 212
Score = 27.2 bits (61), Expect = 5.2
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 248 ISGEFKAGQLTAIMGPSGAGKSTLLNILA 276
++ + K G+ G +GKST +L
Sbjct: 3 MTDDKKKGKFIVFEGLDRSGKSTQSKLLV 31
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase
activation, cytochrome C, procaspase-9, A nucleotide,
cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A*
3iyt_A* 3iza_A*
Length = 1249
Score = 27.9 bits (62), Expect = 5.6
Identities = 7/16 (43%), Positives = 8/16 (50%)
Query: 256 QLTAIMGPSGAGKSTL 271
I G +G GKS L
Sbjct: 148 GWVTIYGMAGCGKSVL 163
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding
protein; 2.30A {Archaeoglobus fulgidus}
Length = 221
Score = 27.2 bits (61), Expect = 5.8
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 260 IMGPSGAGKSTLL 272
IMG G+GK+ L+
Sbjct: 35 IMGAIGSGKTLLI 47
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase;
1.90A {Tomato mosaic virus}
Length = 446
Score = 27.5 bits (60), Expect = 5.8
Identities = 7/41 (17%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 233 YHNPADFLN-KEILHGISGEFKAGQLTAIMGPSGAGKSTLL 272
Y + A + +L + ++ + G G GK+ +
Sbjct: 138 YSDMAKLRTLRRLLKDGEPHVSSAKVVLVDGVPGCGKTKEI 178
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric
ring, heptamer, ring, oligomer, RAD51 polymerizat motif;
HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1
c.37.1.11
Length = 349
Score = 27.3 bits (60), Expect = 6.1
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 250 GEFKAGQLTAIMGPSGAGKSTL 271
G + +T + G G+GK+ L
Sbjct: 126 GGIETQAITEVFGEFGSGKTQL 147
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET:
GDP; 2.50A {Bacillus subtilis}
Length = 436
Score = 27.4 bits (62), Expect = 6.3
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 259 AIMGPSGAGKSTLLNILAG 277
++G GKS+L+N + G
Sbjct: 179 CLIGRPNVGKSSLVNAMLG 197
>1xjc_A MOBB protein homolog; structural genomics, midwest center for
structural GEN PSI, protein structure initiative, MCSG;
2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Length = 169
Score = 26.9 bits (59), Expect = 6.4
Identities = 5/17 (29%), Positives = 10/17 (58%)
Query: 259 AIMGPSGAGKSTLLNIL 275
++G +GK+TL+
Sbjct: 8 QVVGYKHSGKTTLMEKW 24
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling
protein; HET: GDP; 2.36A {Geobacillus
stearothermophilus}
Length = 369
Score = 27.2 bits (60), Expect = 6.6
Identities = 7/36 (19%), Positives = 15/36 (41%)
Query: 251 EFKAGQLTAIMGPSGAGKSTLLNILAGLTYLNFSKC 286
++ G ++G + GKST +N + +
Sbjct: 158 RYREGGDVYVVGCTNVGKSTFINRIIEEATGKGNVI 193
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 27.3 bits (60), Expect = 6.7
Identities = 26/178 (14%), Positives = 47/178 (26%), Gaps = 72/178 (40%)
Query: 25 ERKSACIEQFLKLSC-----YIQ------QDDALRPKLTVTEAMMIASHLKLGFKV-STQ 72
ERK +FL ++ + D ++ ++ A ++ V T
Sbjct: 411 ERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFN-----AKDIQ--IPVYDTF 463
Query: 73 EKKDQVSLELWNNFCKKKKKKKRGLDSSSCSQCVSLLANLAKQGRTVVATIHTPSALLFE 132
+ D R L S+ + + + +
Sbjct: 464 DGSDL-----------------RVLSG-------SISERIVDC--IIRLPVKWETTT--- 494
Query: 133 KFDSLYALAKGHCIYRGSISRLVPHLASLGLPCPAYHNPADFPNLAKQG---RTVVAT 187
+F + + L G G S L L + N K G R +VA
Sbjct: 495 QFKATHILDFG----PGGASG----LGVL-----THRN--------KDGTGVRVIVAG 531
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE;
1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Length = 260
Score = 26.9 bits (59), Expect = 6.9
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 260 IMGPSGAGKSTLLNILAG 277
++G +G GKS N +
Sbjct: 27 LVGKTGTGKSAAGNSILR 44
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP
binding, structure function project, S2F, unknown
function; 2.00A {Escherichia coli} SCOP: c.37.1.10
d.237.1.1
Length = 318
Score = 27.1 bits (61), Expect = 7.1
Identities = 9/13 (69%), Positives = 10/13 (76%), Gaps = 1/13 (7%)
Query: 265 GAGKSTLLN-ILA 276
GAGK+TLL IL
Sbjct: 14 GAGKTTLLRHILN 26
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved
in replication initiation, csgid, IDP90222; HET: DGI;
1.80A {Bacillus anthracis str}
Length = 368
Score = 27.2 bits (60), Expect = 7.4
Identities = 7/27 (25%), Positives = 15/27 (55%)
Query: 251 EFKAGQLTAIMGPSGAGKSTLLNILAG 277
++ G+ ++G + GKST +N +
Sbjct: 156 YYRGGKDVYVVGCTNVGKSTFINRMIK 182
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics
consortium, SGC, immune system; HET: GDP; 2.21A {Homo
sapiens} PDB: 3v70_A*
Length = 247
Score = 27.0 bits (59), Expect = 7.5
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 260 IMGPSGAGKSTLLNILAG 277
++G +GAGKS N + G
Sbjct: 26 LVGRTGAGKSATGNSILG 43
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A
{Coxiella burnetii}
Length = 185
Score = 26.4 bits (59), Expect = 7.8
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 262 GPSGAGKSTLLNILAGLTYLNF 283
G GAGK+++ + LA LT
Sbjct: 12 GLMGAGKTSVGSQLAKLTKRIL 33
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed
alpha-beta fold, elongated beta-sheet, walker A motif,
P-loop structural motif; 1.90A {Escherichia coli} SCOP:
c.37.1.10 PDB: 1p9n_A
Length = 174
Score = 26.4 bits (57), Expect = 8.1
Identities = 9/17 (52%), Positives = 10/17 (58%)
Query: 259 AIMGPSGAGKSTLLNIL 275
A SG GK+TLL L
Sbjct: 10 AFAAWSGTGKTTLLKKL 26
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics,
NPPSFA, national P protein structural and functional
analyses; 2.10A {Aeropyrum pernix}
Length = 186
Score = 26.3 bits (59), Expect = 8.4
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 262 GPSGAGKSTLLNILA 276
G G+GK+T+ LA
Sbjct: 20 GLPGSGKTTIATRLA 34
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2,
ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding,
GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB:
3d6t_B*
Length = 184
Score = 26.6 bits (59), Expect = 8.5
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 260 IMGPSGAGKSTLLNILAGLTY 280
I+G +G+GK+TLL L
Sbjct: 7 IVGNTGSGKTTLLQQLMKTKK 27
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic
region; yeast protein, ATP binding protein; 2.25A
{Saccharomyces cerevisiae} SCOP: c.37.1.6
Length = 290
Score = 26.9 bits (58), Expect = 8.9
Identities = 11/39 (28%), Positives = 15/39 (38%)
Query: 238 DFLNKEILHGISGEFKAGQLTAIMGPSGAGKSTLLNILA 276
+FL+K I K GP G+GKS +
Sbjct: 14 EFLDKYIPEWFETGNKCPLFIFFSGPQGSGKSFTSIQIY 52
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1
(PAPS synthetase...; NMP-kinase fold, protein in complex
with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens}
PDB: 2pey_A* 2ax4_A*
Length = 179
Score = 26.3 bits (59), Expect = 9.0
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 262 GPSGAGKSTLLNILA 276
G SGAGK+T+ L
Sbjct: 12 GLSGAGKTTVSMALE 26
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase,
hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex
aeolicus} PDB: 2eww_A* 2gsz_A*
Length = 372
Score = 26.8 bits (60), Expect = 9.2
Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 15/57 (26%)
Query: 216 ISRLVPHLASLGLPCPAYHNPADFLNKEILHGISGEFKAGQLTAIMGPSGAGKSTLL 272
+ +P LGLP + + + K G L + GP+G+GKST +
Sbjct: 112 LPAEIPEFKKLGLP-------------DKVLELC-HRKMG-LILVTGPTGSGKSTTI 153
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase,
cell division, cell cycle, SEP GTP-binding; 2.20A
{Burkholderia thailandensis}
Length = 223
Score = 26.5 bits (59), Expect = 9.5
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 259 AIMGPSGAGKSTLLNILAG 277
A G S AGKST +N+L
Sbjct: 33 AFAGRSNAGKSTAINVLCN 51
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion
ATPase, ATP-binding, FIMB nucleotide-binding, transport;
HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB:
3jvu_A*
Length = 356
Score = 26.8 bits (60), Expect = 9.6
Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 15/57 (26%)
Query: 216 ISRLVPHLASLGLPCPAYHNPADFLNKEILHGISGEFKAGQLTAIMGPSGAGKSTLL 272
I V + LG+ E+ +S + G L + GP+G+GKST L
Sbjct: 99 IPSKVLTMEELGMG-------------EVFKRVS-DVPRG-LVLVTGPTGSGKSTTL 140
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.134 0.398
Gapped
Lambda K H
0.267 0.0788 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,196,675
Number of extensions: 242303
Number of successful extensions: 1005
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1005
Number of HSP's successfully gapped: 245
Length of query: 286
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 193
Effective length of database: 4,105,140
Effective search space: 792292020
Effective search space used: 792292020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.6 bits)