BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8956
(333 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|148674413|gb|EDL06360.1| mCG5434 [Mus musculus]
Length = 534
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 100/308 (32%), Positives = 168/308 (54%), Gaps = 23/308 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KG+ + W D G R + N + + NLE S+DN+AL + F FG++
Sbjct: 78 KGQPIRIMWSH---RDPGLRKSGMGN-------IFIKNLENSIDNKALYDTFSTFGSILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V N++ SRGF + F T A+KA MNG L+ + V + + + +R +G
Sbjct: 128 SKVVYNEHG-SRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSRQ-KREAELGA 185
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
+ ++VKNL VDE+ L+ F +FGN+ VK++RD NG+S+GFGF+ F ++
Sbjct: 186 RALGFTN--IYVKNLHANVDEQRLQDLFSQFGNMQSVKVMRDSNGQSRGFGFVNFEKHEE 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNK-----IFVANLPS 238
A+KA+ MNG+ + +V A+ ++ K + ++ R+N+ ++V NL
Sbjct: 244 AQKAVDHMNGKEVSGQLLYVGRAQKRAERQSELKRRFEQMKQERQNRYQGVNLYVKNLDD 303
Query: 239 NINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
+IN+ +E+F+ +G ITS+ ++++ K GF+ F P+ AT AV+ MNG + +KPL
Sbjct: 304 SINDERLKEVFSTYGVITSAKVMTESSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPL 363
Query: 295 KVTLSGTK 302
V L+ K
Sbjct: 364 YVALAQRK 371
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 83/259 (32%), Positives = 131/259 (50%), Gaps = 23/259 (8%)
Query: 35 NELHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKKARV 93
+ L+V +L P V L F G + +RV R+ S G+A I F PA+A++A
Sbjct: 11 SSLYVGDLHPDVTESMLYEMFSPIGNILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 94 EMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIK 153
MN +I +P+ I + PG R +G +F+KNL ++D + L F
Sbjct: 71 TMNFEVIKGQPIRIMWSHRDPGLRKSGMG---------NIFIKNLENSIDNKALYDTFST 121
Query: 154 FGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKK 213
FG+I+ K+V +E+G S+GFGF+ F +++AA+KAI MNG ++ FV K
Sbjct: 122 FGSILSSKVVYNEHG-SRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHF------K 174
Query: 214 VFPKVKPPLLQPARK-NKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIG 267
K + L A I+V NL +N++ ++LF++FG + S ++ D + G
Sbjct: 175 SRQKREAELGARALGFTNIYVKNLHANVDEQRLQDLFSQFGNMQSVKVMRDSNGQSRGFG 234
Query: 268 FIEFIMPKHATHAVSTMNG 286
F+ F + A AV MNG
Sbjct: 235 FVNFEKHEEAQKAVDHMNG 253
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Query: 229 NKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGF--IEFIMPKHATHAVS 282
+ ++V +L ++ S E+F+ G I S + D + +G+ I F P A A+
Sbjct: 11 SSLYVGDLHPDVTESMLYEMFSPIGNILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 283 TMNGHVFKSKPLKVTLSGTKPGV 305
TMN V K +P+++ S PG+
Sbjct: 71 TMNFEVIKGQPIRIMWSHRDPGL 93
>gi|187956894|gb|AAI58031.1| 1810053B01Rik protein [Mus musculus]
Length = 607
Score = 157 bits (398), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 100/308 (32%), Positives = 168/308 (54%), Gaps = 23/308 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KG+ + W D G R + N + + NLE S+DN+AL + F FG++
Sbjct: 78 KGQPIRIMWSH---RDPGLRKSGMGN-------IFIKNLENSIDNKALYDTFSTFGSILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V N++ SRGF + F T A+KA MNG L+ + V + + + +R +G
Sbjct: 128 SKVVYNEHG-SRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSRQ-KREAELGA 185
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
+ ++VKNL VDE+ L+ F +FGN+ VK++RD NG+S+GFGF+ F ++
Sbjct: 186 RALGFTN--IYVKNLHANVDEQRLQDLFSQFGNMQSVKVMRDSNGQSRGFGFVNFEKHEE 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNK-----IFVANLPS 238
A+KA+ MNG+ + +V A+ ++ K + ++ R+N+ ++V NL
Sbjct: 244 AQKAVDHMNGKEVSGQLLYVGRAQKRAERQSELKRRFEQMKQERQNRYQGVNLYVKNLDD 303
Query: 239 NINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
+IN+ +E+F+ +G ITS+ ++++ K GF+ F P+ AT AV+ MNG + +KPL
Sbjct: 304 SINDERLKEVFSTYGVITSAKVMTESSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPL 363
Query: 295 KVTLSGTK 302
V L+ K
Sbjct: 364 YVALAQRK 371
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 83/259 (32%), Positives = 131/259 (50%), Gaps = 23/259 (8%)
Query: 35 NELHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKKARV 93
+ L+V +L P V L F G + +RV R+ S G+A I F PA+A++A
Sbjct: 11 SSLYVGDLHPDVTESMLYEMFSPIGNILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 94 EMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIK 153
MN +I +P+ I + PG R +G +F+KNL ++D + L F
Sbjct: 71 TMNFEVIKGQPIRIMWSHRDPGLRKSGMG---------NIFIKNLENSIDNKALYDTFST 121
Query: 154 FGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKK 213
FG+I+ K+V +E+G S+GFGF+ F +++AA+KAI MNG ++ FV K
Sbjct: 122 FGSILSSKVVYNEHG-SRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHF------K 174
Query: 214 VFPKVKPPLLQPARK-NKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIG 267
K + L A I+V NL +N++ ++LF++FG + S ++ D + G
Sbjct: 175 SRQKREAELGARALGFTNIYVKNLHANVDEQRLQDLFSQFGNMQSVKVMRDSNGQSRGFG 234
Query: 268 FIEFIMPKHATHAVSTMNG 286
F+ F + A AV MNG
Sbjct: 235 FVNFEKHEEAQKAVDHMNG 253
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Query: 229 NKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGF--IEFIMPKHATHAVS 282
+ ++V +L ++ S E+F+ G I S + D + +G+ I F P A A+
Sbjct: 11 SSLYVGDLHPDVTESMLYEMFSPIGNILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 283 TMNGHVFKSKPLKVTLSGTKPGV 305
TMN V K +P+++ S PG+
Sbjct: 71 TMNFEVIKGQPIRIMWSHRDPGL 93
>gi|166157896|ref|NP_001107551.1| polyadenylate-binding protein 1-like [Mus musculus]
gi|187960776|gb|ACD43645.1| embryonic poly(A)-binding protein [Mus musculus]
Length = 607
Score = 157 bits (398), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 100/308 (32%), Positives = 168/308 (54%), Gaps = 23/308 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KG+ + W D G R + N + + NLE S+DN+AL + F FG++
Sbjct: 78 KGQPIRIMWSH---RDPGLRKSGMGN-------IFIKNLENSIDNKALYDTFSTFGSILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V N++ SRGF + F T A+KA MNG L+ + V + + + +R +G
Sbjct: 128 SKVVYNEHG-SRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSRQ-KREAELGA 185
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
+ ++VKNL VDE+ L+ F +FGN+ VK++RD NG+S+GFGF+ F ++
Sbjct: 186 RALGFTN--IYVKNLHANVDEQRLQDLFSQFGNMQSVKVMRDSNGQSRGFGFVNFEKHEE 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNK-----IFVANLPS 238
A+KA+ MNG+ + +V A+ ++ K + ++ R+N+ ++V NL
Sbjct: 244 AQKAVDHMNGKEVSGQLLYVGRAQKRAERQSELKRRFEQMKQERQNRYQGVNLYVKNLDD 303
Query: 239 NINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
+IN+ +E+F+ +G ITS+ ++++ K GF+ F P+ AT AV+ MNG + +KPL
Sbjct: 304 SINDERLKEVFSTYGVITSAKVMTESSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPL 363
Query: 295 KVTLSGTK 302
V L+ K
Sbjct: 364 YVALAQRK 371
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 83/259 (32%), Positives = 131/259 (50%), Gaps = 23/259 (8%)
Query: 35 NELHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKKARV 93
+ L+V +L P V L F G + +RV R+ S G+A I F PA+A++A
Sbjct: 11 SSLYVGDLHPDVTESMLYEMFSPIGNILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 94 EMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIK 153
MN +I +P+ I + PG R +G +F+KNL ++D + L F
Sbjct: 71 TMNFEVIKGQPIRIMWSHRDPGLRKSGMG---------NIFIKNLENSIDNKALYDTFST 121
Query: 154 FGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKK 213
FG+I+ K+V +E+G S+GFGF+ F +++AA+KAI MNG ++ FV K
Sbjct: 122 FGSILSSKVVYNEHG-SRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHF------K 174
Query: 214 VFPKVKPPLLQPARK-NKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIG 267
K + L A I+V NL +N++ ++LF++FG + S ++ D + G
Sbjct: 175 SRQKREAELGARALGFTNIYVKNLHANVDEQRLQDLFSQFGNMQSVKVMRDSNGQSRGFG 234
Query: 268 FIEFIMPKHATHAVSTMNG 286
F+ F + A AV MNG
Sbjct: 235 FVNFEKHEEAQKAVDHMNG 253
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Query: 229 NKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGF--IEFIMPKHATHAVS 282
+ ++V +L ++ S E+F+ G I S + D + +G+ I F P A A+
Sbjct: 11 SSLYVGDLHPDVTESMLYEMFSPIGNILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 283 TMNGHVFKSKPLKVTLSGTKPGV 305
TMN V K +P+++ S PG+
Sbjct: 71 TMNFEVIKGQPIRIMWSHRDPGL 93
>gi|390465724|ref|XP_002750686.2| PREDICTED: polyadenylate-binding protein 4 [Callithrix jacchus]
Length = 656
Score = 157 bits (397), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 96/273 (35%), Positives = 155/273 (56%), Gaps = 13/273 (4%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+DN+AL + F FG + +V ++N S+G+A + F T A KA +MNG
Sbjct: 103 IKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGM 161
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ + V + + + +R +G + K++ V++KN E VD+E LK FI+FG +
Sbjct: 162 LLNDRKVFVGRFKSRK-EREAELGAKAKEFTN--VYIKNFGEEVDDESLKELFIQFGKTL 218
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKK 213
VK++RD NGKSKGFGF+ + ++ A KA+ EMNG+ I FV A+ K+
Sbjct: 219 SVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKR 278
Query: 214 VFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLV----SDKHIGFI 269
F ++K + + +++ NL I++ + + F+ FG+ITS+ ++ K GF+
Sbjct: 279 KFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFV 338
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F P+ AT AV+ MNG + SKPL V L+ K
Sbjct: 339 CFSSPEEATKAVTEMNGRIVGSKPLYVALAQRK 371
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 127/269 (47%), Gaps = 37/269 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KP+ I + + P R VG VF+KNL +++D + L
Sbjct: 68 ALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+ F+ F + +AA+KAI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N +++ +ELF +FG S ++
Sbjct: 178 EREAELGAKAKEF-------------TNVYIKNFGEEVDDESLKELFIQFGKTLSVKVMR 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNG 286
D K GF+ + + A AV MNG
Sbjct: 225 DPNGKSKGFGFVSYEKHEDANKAVEEMNG 253
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L++ NL+ ++D++ L EF FG++ +V ++ S+GF + F++P EA KA
Sbjct: 291 YQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKA 349
Query: 92 RVEMNGHLIGSKPVIITFVELK 113
EMNG ++GSKP+ + + K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITS----SSLVSDKHIGF--IEFIMPKHATHAVSTM 284
++V +L S++ + E F+ G + S +++ + +G+ + F P A A+ TM
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N V K KP+++ S P +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSL 93
>gi|403292058|ref|XP_003937074.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Saimiri
boliviensis boliviensis]
Length = 659
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 95/273 (34%), Positives = 154/273 (56%), Gaps = 13/273 (4%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+DN+AL + F FG + +V ++N S+G+A + F T A KA +MNG
Sbjct: 103 IKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGM 161
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ + V + + + +R +G + K++ V++KN E VD+E LK F +FG +
Sbjct: 162 LLNDRKVFVGRFKSRK-EREAELGAKAKEFTN--VYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKK 213
VK++RD NGKSKGFGF+ + ++ A KA+ EMNG+ I FV A+ K+
Sbjct: 219 SVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKR 278
Query: 214 VFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLV----SDKHIGFI 269
F ++K + + +++ NL I++ + + F+ FG+ITS+ ++ K GF+
Sbjct: 279 KFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFV 338
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F P+ AT AV+ MNG + SKPL V L+ K
Sbjct: 339 CFSSPEEATKAVTEMNGRIVGSKPLYVALAQRK 371
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 128/269 (47%), Gaps = 37/269 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KP+ I + + P R VG VF+KNL +++D + L
Sbjct: 68 ALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+ F+ F + +AA+KAI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N +++ +ELF++FG S ++
Sbjct: 178 EREAELGAKAKEF-------------TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMR 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNG 286
D K GF+ + + A AV MNG
Sbjct: 225 DPNGKSKGFGFVSYEKHEDANKAVEEMNG 253
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L++ NL+ ++D++ L EF FG++ +V ++ S+GF + F++P EA KA
Sbjct: 291 YQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKA 349
Query: 92 RVEMNGHLIGSKPVIITFVELK 113
EMNG ++GSKP+ + + K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITS----SSLVSDKHIGF--IEFIMPKHATHAVSTM 284
++V +L S++ + E F+ G + S +++ + +G+ + F P A A+ TM
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N V K KP+++ S P +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSL 93
>gi|119612222|gb|EAW91816.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_c [Homo
sapiens]
gi|119612227|gb|EAW91821.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_c [Homo
sapiens]
Length = 419
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 92/275 (33%), Positives = 155/275 (56%), Gaps = 13/275 (4%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S+DN+AL + F FG + +V ++N S+G+ + F T A++A +MN
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 159
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G L+ + V + + + +R +G K++ V++KN E +D+E LK F KFG
Sbjct: 160 GMLLNDRKVFVGRFKSRK-EREAELGARAKEFTN--VYIKNFGEDMDDERLKDLFGKFGP 216
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPG 211
+ VK++ DE+GKSKGFGF+ F ++ A+KA+ EMNG+ + +V A+
Sbjct: 217 ALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTEL 276
Query: 212 KKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIG 267
K+ F ++K + + ++V NL I++ + F+ FGTITS+ ++ + K G
Sbjct: 277 KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFG 336
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F+ F P+ AT AV+ MNG + +KPL V L+ K
Sbjct: 337 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 371
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 88/279 (31%), Positives = 134/279 (48%), Gaps = 37/279 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KPV I + + P R VG +F+KNL +++D + L
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVG---------NIFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+GF+ F + +AAE+AI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F V ++ N ++++ ++LF +FG S +++
Sbjct: 178 EREAELGARAKEFTNV-------------YIKNFGEDMDDERLKDLFGKFGPALSVKVMT 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
D K GF+ F + A AV MNG K + V
Sbjct: 225 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>gi|208431833|ref|NP_001129125.1| polyadenylate-binding protein 4 isoform 1 [Homo sapiens]
gi|332808508|ref|XP_513344.3| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Pan
troglodytes]
gi|395730714|ref|XP_002811047.2| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Pongo abelii]
gi|397488842|ref|XP_003815452.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Pan paniscus]
gi|426329062|ref|XP_004025563.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Gorilla
gorilla gorilla]
gi|66267552|gb|AAH94755.1| PABPC4 protein [Homo sapiens]
gi|119627668|gb|EAX07263.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_c [Homo sapiens]
gi|410227598|gb|JAA11018.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
gi|410227604|gb|JAA11021.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 660
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 95/273 (34%), Positives = 154/273 (56%), Gaps = 13/273 (4%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+DN+AL + F FG + +V ++N S+G+A + F T A KA +MNG
Sbjct: 103 IKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGM 161
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ + V + + + +R +G + K++ V++KN E VD+E LK F +FG +
Sbjct: 162 LLNDRKVFVGRFKSRK-EREAELGAKAKEFTN--VYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKK 213
VK++RD NGKSKGFGF+ + ++ A KA+ EMNG+ I FV A+ K+
Sbjct: 219 SVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKR 278
Query: 214 VFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLV----SDKHIGFI 269
F ++K + + +++ NL I++ + + F+ FG+ITS+ ++ K GF+
Sbjct: 279 KFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFV 338
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F P+ AT AV+ MNG + SKPL V L+ K
Sbjct: 339 CFSSPEEATKAVTEMNGRIVGSKPLYVALAQRK 371
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 128/269 (47%), Gaps = 37/269 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KP+ I + + P R VG VF+KNL +++D + L
Sbjct: 68 ALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+ F+ F + +AA+KAI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N +++ +ELF++FG S ++
Sbjct: 178 EREAELGAKAKEF-------------TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMR 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNG 286
D K GF+ + + A AV MNG
Sbjct: 225 DPNGKSKGFGFVSYEKHEDANKAVEEMNG 253
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L++ NL+ ++D++ L EF FG++ +V ++ S+GF + F++P EA KA
Sbjct: 291 YQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKA 349
Query: 92 RVEMNGHLIGSKPVIITFVELK 113
EMNG ++GSKP+ + + K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITS----SSLVSDKHIGF--IEFIMPKHATHAVSTM 284
++V +L S++ + E F+ G + S +++ + +G+ + F P A A+ TM
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N V K KP+++ S P +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSL 93
>gi|119627673|gb|EAX07268.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_h [Homo sapiens]
Length = 661
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 95/273 (34%), Positives = 154/273 (56%), Gaps = 13/273 (4%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+DN+AL + F FG + +V ++N S+G+A + F T A KA +MNG
Sbjct: 103 IKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGM 161
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ + V + + + +R +G + K++ V++KN E VD+E LK F +FG +
Sbjct: 162 LLNDRKVFVGRFKSRK-EREAELGAKAKEFTN--VYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKK 213
VK++RD NGKSKGFGF+ + ++ A KA+ EMNG+ I FV A+ K+
Sbjct: 219 SVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKR 278
Query: 214 VFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLV----SDKHIGFI 269
F ++K + + +++ NL I++ + + F+ FG+ITS+ ++ K GF+
Sbjct: 279 KFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFV 338
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F P+ AT AV+ MNG + SKPL V L+ K
Sbjct: 339 CFSSPEEATKAVTEMNGRIVGSKPLYVALAQRK 371
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 128/269 (47%), Gaps = 37/269 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KP+ I + + P R VG VF+KNL +++D + L
Sbjct: 68 ALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+ F+ F + +AA+KAI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N +++ +ELF++FG S ++
Sbjct: 178 EREAELGAKAKEF-------------TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMR 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNG 286
D K GF+ + + A AV MNG
Sbjct: 225 DPNGKSKGFGFVSYEKHEDANKAVEEMNG 253
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L++ NL+ ++D++ L EF FG++ +V ++ S+GF + F++P EA KA
Sbjct: 291 YQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKA 349
Query: 92 RVEMNGHLIGSKPVIITFVELK 113
EMNG ++GSKP+ + + K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITS----SSLVSDKHIGF--IEFIMPKHATHAVSTM 284
++V +L S++ + E F+ G + S +++ + +G+ + F P A A+ TM
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N V K KP+++ S P +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSL 93
>gi|410263248|gb|JAA19590.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
gi|410263254|gb|JAA19593.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 660
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 95/273 (34%), Positives = 154/273 (56%), Gaps = 13/273 (4%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+DN+AL + F FG + +V ++N S+G+A + F T A KA +MNG
Sbjct: 103 IKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGM 161
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ + V + + + +R +G + K++ V++KN E VD+E LK F +FG +
Sbjct: 162 LLNDRKVFVGRFKSRK-EREAELGAKAKEFTN--VYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKK 213
VK++RD NGKSKGFGF+ + ++ A KA+ EMNG+ I FV A+ K+
Sbjct: 219 SVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKR 278
Query: 214 VFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLV----SDKHIGFI 269
F ++K + + +++ NL I++ + + F+ FG+ITS+ ++ K GF+
Sbjct: 279 KFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFV 338
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F P+ AT AV+ MNG + SKPL V L+ K
Sbjct: 339 CFSSPEEATKAVTEMNGRIVGSKPLYVALAQRK 371
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 128/269 (47%), Gaps = 37/269 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KP+ I + + P R VG VF+KNL +++D + L
Sbjct: 68 ALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+ F+ F + +AA+KAI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N +++ +ELF++FG S ++
Sbjct: 178 EREAELGAKAKEF-------------TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMR 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNG 286
D K GF+ + + A AV MNG
Sbjct: 225 DPNGKSKGFGFVSYEKHEDANKAVEEMNG 253
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L++ NL+ ++D++ L EF FG++ +V ++ S+GF + F++P EA KA
Sbjct: 291 YQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKA 349
Query: 92 RVEMNGHLIGSKPVIITFVELK 113
EMNG ++GSKP+ + + K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITS----SSLVSDKHIGF--IEFIMPKHATHAVSTM 284
++V +L S++ + E F+ G + S +++ + +G+ + F P A A+ TM
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N V K KP+++ S P +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSL 93
>gi|119627667|gb|EAX07262.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_b [Homo sapiens]
Length = 645
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 95/273 (34%), Positives = 155/273 (56%), Gaps = 13/273 (4%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+DN+AL + F FG + +V ++N S+G+A + F T A KA +MNG
Sbjct: 103 IKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGM 161
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ + V + + + +R +G + K++ V++KN E VD+E LK F +FG +
Sbjct: 162 LLNDRKVFVGRFKSRK-EREAELGAKAKEFTN--VYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKK 213
VK++RD NGKSKGFGF+ + ++ A KA+ EMNG+ I FV A+ K+
Sbjct: 219 SVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKR 278
Query: 214 VFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGFI 269
F ++K + + +++ NL I++ + + F+ FG+ITS+ ++ + K GF+
Sbjct: 279 KFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFV 338
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F P+ AT AV+ MNG + SKPL V L+ K
Sbjct: 339 CFSSPEEATKAVTEMNGRIVGSKPLYVALAQRK 371
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 128/269 (47%), Gaps = 37/269 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KP+ I + + P R VG VF+KNL +++D + L
Sbjct: 68 ALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+ F+ F + +AA+KAI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N +++ +ELF++FG S ++
Sbjct: 178 EREAELGAKAKEF-------------TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMR 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNG 286
D K GF+ + + A AV MNG
Sbjct: 225 DPNGKSKGFGFVSYEKHEDANKAVEEMNG 253
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L++ NL+ ++D++ L EF FG++ +V ++ S+GF + F++P EA KA
Sbjct: 291 YQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKA 349
Query: 92 RVEMNGHLIGSKPVIITFVELK 113
EMNG ++GSKP+ + + K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITS----SSLVSDKHIGF--IEFIMPKHATHAVSTM 284
++V +L S++ + E F+ G + S +++ + +G+ + F P A A+ TM
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N V K KP+++ S P +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSL 93
>gi|48734702|gb|AAH71591.1| PABPC4 protein [Homo sapiens]
Length = 660
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 95/273 (34%), Positives = 154/273 (56%), Gaps = 13/273 (4%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+DN+AL + F FG + +V ++N S+G+A + F T A KA +MNG
Sbjct: 103 IKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGM 161
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ + V + + + +R +G + K++ V++KN E VD+E LK F +FG +
Sbjct: 162 LLNDRKVFVGRFKSRK-EREAELGAKAKEFTN--VYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKK 213
VK++RD NGKSKGFGF+ + ++ A KA+ EMNG+ I FV A+ K+
Sbjct: 219 SVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKR 278
Query: 214 VFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLV----SDKHIGFI 269
F ++K + + +++ NL I++ + + F+ FG+ITS+ ++ K GF+
Sbjct: 279 KFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFV 338
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F P+ AT AV+ MNG + SKPL V L+ K
Sbjct: 339 CFSSPEEATKAVTEMNGRIVGSKPLYVALAQRK 371
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 128/269 (47%), Gaps = 37/269 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KP+ I + + P R VG VF+KNL +++D + L
Sbjct: 68 ALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+ F+ F + +AA+KAI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N +++ +ELF++FG S ++
Sbjct: 178 EREAELGAKAKEF-------------TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMR 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNG 286
D K GF+ + + A AV MNG
Sbjct: 225 DPNGKSKGFGFVSYEKHEDANKAVEEMNG 253
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L++ NL+ ++D++ L EF FG++ +V ++ S+GF + F++P EA KA
Sbjct: 291 YQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKA 349
Query: 92 RVEMNGHLIGSKPVIITFVELK 113
EMNG ++GSKP+ + + K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITS----SSLVSDKHIGF--IEFIMPKHATHAVSTM 284
++V +L S++ + E F+ G + S +++ + +G+ + F P A A+ TM
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N V K KP+++ S P +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSL 93
>gi|403292060|ref|XP_003937075.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Saimiri
boliviensis boliviensis]
Length = 643
Score = 154 bits (390), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 95/273 (34%), Positives = 155/273 (56%), Gaps = 13/273 (4%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+DN+AL + F FG + +V ++N S+G+A + F T A KA +MNG
Sbjct: 103 IKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGM 161
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ + V + + + +R +G + K++ V++KN E VD+E LK F +FG +
Sbjct: 162 LLNDRKVFVGRFKSRK-EREAELGAKAKEFTN--VYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKK 213
VK++RD NGKSKGFGF+ + ++ A KA+ EMNG+ I FV A+ K+
Sbjct: 219 SVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKR 278
Query: 214 VFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGFI 269
F ++K + + +++ NL I++ + + F+ FG+ITS+ ++ + K GF+
Sbjct: 279 KFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFV 338
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F P+ AT AV+ MNG + SKPL V L+ K
Sbjct: 339 CFSSPEEATKAVTEMNGRIVGSKPLYVALAQRK 371
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 128/269 (47%), Gaps = 37/269 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KP+ I + + P R VG VF+KNL +++D + L
Sbjct: 68 ALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+ F+ F + +AA+KAI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N +++ +ELF++FG S ++
Sbjct: 178 EREAELGAKAKEF-------------TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMR 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNG 286
D K GF+ + + A AV MNG
Sbjct: 225 DPNGKSKGFGFVSYEKHEDANKAVEEMNG 253
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L++ NL+ ++D++ L EF FG++ +V ++ S+GF + F++P EA KA
Sbjct: 291 YQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKA 349
Query: 92 RVEMNGHLIGSKPVIITFVELK 113
EMNG ++GSKP+ + + K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITS----SSLVSDKHIGF--IEFIMPKHATHAVSTM 284
++V +L S++ + E F+ G + S +++ + +G+ + F P A A+ TM
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N V K KP+++ S P +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSL 93
>gi|4504715|ref|NP_003810.1| polyadenylate-binding protein 4 isoform 2 [Homo sapiens]
gi|332808510|ref|XP_003308042.1| PREDICTED: polyadenylate-binding protein 4 [Pan troglodytes]
gi|395730716|ref|XP_003775777.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Pongo abelii]
gi|397488844|ref|XP_003815453.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Pan paniscus]
gi|426329066|ref|XP_004025565.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Gorilla
gorilla gorilla]
gi|12229875|sp|Q13310.1|PABP4_HUMAN RecName: Full=Polyadenylate-binding protein 4; Short=PABP-4;
Short=Poly(A)-binding protein 4; AltName:
Full=Activated-platelet protein 1; Short=APP-1; AltName:
Full=Inducible poly(A)-binding protein; Short=iPABP
gi|1163177|gb|AAC50350.1| inducible poly(A)-binding protein [Homo sapiens]
gi|2801403|gb|AAB97309.1| polyadenylate binding protein [Homo sapiens]
gi|119627669|gb|EAX07264.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_d [Homo sapiens]
gi|410227600|gb|JAA11019.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
gi|1585757|prf||2201474A inducible poly(A)-binding protein
Length = 644
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 95/273 (34%), Positives = 155/273 (56%), Gaps = 13/273 (4%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+DN+AL + F FG + +V ++N S+G+A + F T A KA +MNG
Sbjct: 103 IKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGM 161
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ + V + + + +R +G + K++ V++KN E VD+E LK F +FG +
Sbjct: 162 LLNDRKVFVGRFKSRK-EREAELGAKAKEFTN--VYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKK 213
VK++RD NGKSKGFGF+ + ++ A KA+ EMNG+ I FV A+ K+
Sbjct: 219 SVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKR 278
Query: 214 VFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGFI 269
F ++K + + +++ NL I++ + + F+ FG+ITS+ ++ + K GF+
Sbjct: 279 KFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFV 338
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F P+ AT AV+ MNG + SKPL V L+ K
Sbjct: 339 CFSSPEEATKAVTEMNGRIVGSKPLYVALAQRK 371
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 128/269 (47%), Gaps = 37/269 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KP+ I + + P R VG VF+KNL +++D + L
Sbjct: 68 ALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+ F+ F + +AA+KAI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N +++ +ELF++FG S ++
Sbjct: 178 EREAELGAKAKEF-------------TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMR 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNG 286
D K GF+ + + A AV MNG
Sbjct: 225 DPNGKSKGFGFVSYEKHEDANKAVEEMNG 253
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L++ NL+ ++D++ L EF FG++ +V ++ S+GF + F++P EA KA
Sbjct: 291 YQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKA 349
Query: 92 RVEMNGHLIGSKPVIITFVELK 113
EMNG ++GSKP+ + + K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITS----SSLVSDKHIGF--IEFIMPKHATHAVSTM 284
++V +L S++ + E F+ G + S +++ + +G+ + F P A A+ TM
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N V K KP+++ S P +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSL 93
>gi|403292062|ref|XP_003937076.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Saimiri
boliviensis boliviensis]
Length = 630
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 102/308 (33%), Positives = 166/308 (53%), Gaps = 23/308 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK + W + D R + N + + NL+ S+DN+AL + F FG +
Sbjct: 78 KGKPIRIMWSQ---RDPSLRKSGVGN-------VFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V ++N S+G+A + F T A KA +MNG L+ + V + + + +R +G
Sbjct: 128 CKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK-EREAELGA 185
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
+ K++ V++KN E VD+E LK F +FG + VK++RD NGKSKGFGF+ + ++
Sbjct: 186 KAKEFTN--VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHED 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A KA+ EMNG+ I FV A+ K+ F ++K + + +++ NL
Sbjct: 244 ANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 239 NINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
I++ + + F+ FG+ITS+ ++ + K GF+ F P+ AT AV+ MNG + SKPL
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPL 363
Query: 295 KVTLSGTK 302
V L+ K
Sbjct: 364 YVALAQRK 371
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 128/269 (47%), Gaps = 37/269 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KP+ I + + P R VG VF+KNL +++D + L
Sbjct: 68 ALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+ F+ F + +AA+KAI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N +++ +ELF++FG S ++
Sbjct: 178 EREAELGAKAKEF-------------TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMR 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNG 286
D K GF+ + + A AV MNG
Sbjct: 225 DPNGKSKGFGFVSYEKHEDANKAVEEMNG 253
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITS----SSLVSDKHIGF--IEFIMPKHATHAVSTM 284
++V +L S++ + E F+ G + S +++ + +G+ + F P A A+ TM
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N V K KP+++ S P +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSL 93
>gi|410263250|gb|JAA19591.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 644
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 95/273 (34%), Positives = 155/273 (56%), Gaps = 13/273 (4%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+DN+AL + F FG + +V ++N S+G+A + F T A KA +MNG
Sbjct: 103 IKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGM 161
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ + V + + + +R +G + K++ V++KN E VD+E LK F +FG +
Sbjct: 162 LLNDRKVFVGRFKSRK-EREAELGAKAKEFTN--VYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKK 213
VK++RD NGKSKGFGF+ + ++ A KA+ EMNG+ I FV A+ K+
Sbjct: 219 SVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKR 278
Query: 214 VFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGFI 269
F ++K + + +++ NL I++ + + F+ FG+ITS+ ++ + K GF+
Sbjct: 279 KFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFV 338
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F P+ AT AV+ MNG + SKPL V L+ K
Sbjct: 339 CFSSPEEATKAVTEMNGRIVGSKPLYVALAQRK 371
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 128/269 (47%), Gaps = 37/269 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KP+ I + + P R VG VF+KNL +++D + L
Sbjct: 68 ALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+ F+ F + +AA+KAI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N +++ +ELF++FG S ++
Sbjct: 178 EREAELGAKAKEF-------------TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMR 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNG 286
D K GF+ + + A AV MNG
Sbjct: 225 DPNGKSKGFGFVSYEKHEDANKAVEEMNG 253
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L++ NL+ ++D++ L EF FG++ +V ++ S+GF + F++P EA KA
Sbjct: 291 YQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKA 349
Query: 92 RVEMNGHLIGSKPVIITFVELK 113
EMNG ++GSKP+ + + K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITS----SSLVSDKHIGF--IEFIMPKHATHAVSTM 284
++V +L S++ + E F+ G + S +++ + +G+ + F P A A+ TM
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N V K KP+++ S P +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSL 93
>gi|119627670|gb|EAX07265.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_e [Homo sapiens]
Length = 615
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 102/308 (33%), Positives = 166/308 (53%), Gaps = 23/308 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK + W + D R + N + + NL+ S+DN+AL + F FG +
Sbjct: 78 KGKPIRIMWSQ---RDPSLRKSGVGN-------VFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V ++N S+G+A + F T A KA +MNG L+ + V + + + +R +G
Sbjct: 128 CKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK-EREAELGA 185
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
+ K++ V++KN E VD+E LK F +FG + VK++RD NGKSKGFGF+ + ++
Sbjct: 186 KAKEFTN--VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHED 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A KA+ EMNG+ I FV A+ K+ F ++K + + +++ NL
Sbjct: 244 ANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 239 NINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
I++ + + F+ FG+ITS+ ++ + K GF+ F P+ AT AV+ MNG + SKPL
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPL 363
Query: 295 KVTLSGTK 302
V L+ K
Sbjct: 364 YVALAQRK 371
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 128/269 (47%), Gaps = 37/269 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KP+ I + + P R VG VF+KNL +++D + L
Sbjct: 68 ALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+ F+ F + +AA+KAI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N +++ +ELF++FG S ++
Sbjct: 178 EREAELGAKAKEF-------------TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMR 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNG 286
D K GF+ + + A AV MNG
Sbjct: 225 DPNGKSKGFGFVSYEKHEDANKAVEEMNG 253
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITS----SSLVSDKHIGF--IEFIMPKHATHAVSTM 284
++V +L S++ + E F+ G + S +++ + +G+ + F P A A+ TM
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N V K KP+++ S P +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSL 93
>gi|208431836|ref|NP_001129126.1| polyadenylate-binding protein 4 isoform 3 [Homo sapiens]
gi|332808512|ref|XP_003308043.1| PREDICTED: polyadenylate-binding protein 4 [Pan troglodytes]
gi|395730718|ref|XP_003775778.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Pongo abelii]
gi|426329064|ref|XP_004025564.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Gorilla
gorilla gorilla]
gi|119627671|gb|EAX07266.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_f [Homo sapiens]
gi|410227602|gb|JAA11020.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 631
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 102/308 (33%), Positives = 165/308 (53%), Gaps = 23/308 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK + W + D R + N + + NL+ S+DN+AL + F FG +
Sbjct: 78 KGKPIRIMWSQ---RDPSLRKSGVGN-------VFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V ++N S+G+A + F T A KA +MNG L+ + V + + + +R +G
Sbjct: 128 CKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK-EREAELGA 185
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
+ K++ V++KN E VD+E LK F +FG + VK++RD NGKSKGFGF+ + ++
Sbjct: 186 KAKEF--TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHED 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A KA+ EMNG+ I FV A+ K+ F ++K + + +++ NL
Sbjct: 244 ANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 239 NINNSEFEELFARFGTITSSSLV----SDKHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
I++ + + F+ FG+ITS+ ++ K GF+ F P+ AT AV+ MNG + SKPL
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPL 363
Query: 295 KVTLSGTK 302
V L+ K
Sbjct: 364 YVALAQRK 371
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 128/269 (47%), Gaps = 37/269 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KP+ I + + P R VG VF+KNL +++D + L
Sbjct: 68 ALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+ F+ F + +AA+KAI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N +++ +ELF++FG S ++
Sbjct: 178 EREAELGAKAKEF-------------TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMR 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNG 286
D K GF+ + + A AV MNG
Sbjct: 225 DPNGKSKGFGFVSYEKHEDANKAVEEMNG 253
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITS----SSLVSDKHIGF--IEFIMPKHATHAVSTM 284
++V +L S++ + E F+ G + S +++ + +G+ + F P A A+ TM
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N V K KP+++ S P +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSL 93
>gi|410263252|gb|JAA19592.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 631
Score = 154 bits (389), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 102/308 (33%), Positives = 166/308 (53%), Gaps = 23/308 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK + W + D R + N + + NL+ S+DN+AL + F FG +
Sbjct: 78 KGKPIRIMWSQ---RDPSLRKSGVGN-------VFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V ++N S+G+A + F T A KA +MNG L+ + V + + + +R +G
Sbjct: 128 CKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK-EREAELGA 185
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
+ K++ V++KN E VD+E LK F +FG + VK++RD NGKSKGFGF+ + ++
Sbjct: 186 KAKEFTN--VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHED 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A KA+ EMNG+ I FV A+ K+ F ++K + + +++ NL
Sbjct: 244 ANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 239 NINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
I++ + + F+ FG+ITS+ ++ + K GF+ F P+ AT AV+ MNG + SKPL
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPL 363
Query: 295 KVTLSGTK 302
V L+ K
Sbjct: 364 YVALAQRK 371
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 128/269 (47%), Gaps = 37/269 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KP+ I + + P R VG VF+KNL +++D + L
Sbjct: 68 ALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+ F+ F + +AA+KAI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N +++ +ELF++FG S ++
Sbjct: 178 EREAELGAKAKEF-------------TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMR 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNG 286
D K GF+ + + A AV MNG
Sbjct: 225 DPNGKSKGFGFVSYEKHEDANKAVEEMNG 253
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITS----SSLVSDKHIGF--IEFIMPKHATHAVSTM 284
++V +L S++ + E F+ G + S +++ + +G+ + F P A A+ TM
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N V K KP+++ S P +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSL 93
>gi|417403696|gb|JAA48646.1| Putative polyadenylate-binding protein rrm superfamily [Desmodus
rotundus]
Length = 660
Score = 154 bits (388), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 94/273 (34%), Positives = 154/273 (56%), Gaps = 13/273 (4%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+DN+AL + F FG + +V ++N S+G+A + F T A KA +MNG
Sbjct: 103 IKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGM 161
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ + V + + + +R +G + K++ V++KN E +D+E LK F +FG +
Sbjct: 162 LLNDRKVFVGRFKSRK-EREAELGAKAKEFTN--VYIKNFGEEMDDESLKELFSQFGKTL 218
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKK 213
VK++RD NGKSKGFGF+ + ++ A KA+ EMNG+ I FV A+ K+
Sbjct: 219 SVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKR 278
Query: 214 VFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLV----SDKHIGFI 269
F ++K + + +++ NL I++ + + F+ FG+ITS+ ++ K GF+
Sbjct: 279 KFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFV 338
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F P+ AT AV+ MNG + SKPL V L+ K
Sbjct: 339 CFSSPEEATKAVTEMNGRIVGSKPLYVALAQRK 371
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 128/269 (47%), Gaps = 37/269 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KP+ I + + P R VG VF+KNL +++D + L
Sbjct: 68 ALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+ F+ F + +AA+KAI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N +++ +ELF++FG S ++
Sbjct: 178 EREAELGAKAKEF-------------TNVYIKNFGEEMDDESLKELFSQFGKTLSVKVMR 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNG 286
D K GF+ + + A AV MNG
Sbjct: 225 DPNGKSKGFGFVSYEKHEDANKAVEEMNG 253
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L++ NL+ ++D++ L EF FG++ +V ++ S+GF + F++P EA KA
Sbjct: 291 YQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKA 349
Query: 92 RVEMNGHLIGSKPVIITFVELK 113
EMNG ++GSKP+ + + K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITS----SSLVSDKHIGF--IEFIMPKHATHAVSTM 284
++V +L S++ + E F+ G + S +++ + +G+ + F P A A+ TM
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N V K KP+++ S P +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSL 93
>gi|417403591|gb|JAA48595.1| Putative polyadenylate-binding protein rrm superfamily [Desmodus
rotundus]
Length = 644
Score = 153 bits (387), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 94/273 (34%), Positives = 155/273 (56%), Gaps = 13/273 (4%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+DN+AL + F FG + +V ++N S+G+A + F T A KA +MNG
Sbjct: 103 IKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGM 161
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ + V + + + +R +G + K++ V++KN E +D+E LK F +FG +
Sbjct: 162 LLNDRKVFVGRFKSRK-EREAELGAKAKEFTN--VYIKNFGEEMDDESLKELFSQFGKTL 218
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKK 213
VK++RD NGKSKGFGF+ + ++ A KA+ EMNG+ I FV A+ K+
Sbjct: 219 SVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKR 278
Query: 214 VFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGFI 269
F ++K + + +++ NL I++ + + F+ FG+ITS+ ++ + K GF+
Sbjct: 279 KFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFV 338
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F P+ AT AV+ MNG + SKPL V L+ K
Sbjct: 339 CFSSPEEATKAVTEMNGRIVGSKPLYVALAQRK 371
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 128/269 (47%), Gaps = 37/269 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KP+ I + + P R VG VF+KNL +++D + L
Sbjct: 68 ALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+ F+ F + +AA+KAI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N +++ +ELF++FG S ++
Sbjct: 178 EREAELGAKAKEF-------------TNVYIKNFGEEMDDESLKELFSQFGKTLSVKVMR 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNG 286
D K GF+ + + A AV MNG
Sbjct: 225 DPNGKSKGFGFVSYEKHEDANKAVEEMNG 253
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L++ NL+ ++D++ L EF FG++ +V ++ S+GF + F++P EA KA
Sbjct: 291 YQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKA 349
Query: 92 RVEMNGHLIGSKPVIITFVELK 113
EMNG ++GSKP+ + + K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITS----SSLVSDKHIGF--IEFIMPKHATHAVSTM 284
++V +L S++ + E F+ G + S +++ + +G+ + F P A A+ TM
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N V K KP+++ S P +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSL 93
>gi|344236474|gb|EGV92577.1| Polyadenylate-binding protein 4 [Cricetulus griseus]
Length = 524
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 92/273 (33%), Positives = 155/273 (56%), Gaps = 13/273 (4%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+DN+AL + F FG + +V ++N S+G+A + F T A KA +MNG
Sbjct: 94 IKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGM 152
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ + V + + + +R +G + K++ V++KN E VD++ LK F +FG +
Sbjct: 153 LLNDRKVFVGRFKSRK-EREAELGAKAKEFTN--VYIKNFGEEVDDDNLKELFSQFGKTL 209
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKK 213
VK++RD +GKSKGFGF+ + ++ A KA+ EMNG+ + + FV A+ K+
Sbjct: 210 SVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKR 269
Query: 214 VFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLV----SDKHIGFI 269
F ++K + + +++ NL I++ + + F+ FG+ITS+ ++ K GF+
Sbjct: 270 KFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFV 329
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F P+ AT AV+ MNG + SKPL V L+ K
Sbjct: 330 CFSSPEEATKAVTEMNGRIVGSKPLYVALAQRK 362
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 84/274 (30%), Positives = 130/274 (47%), Gaps = 37/274 (13%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L V L +F G + +RV R+ S G+A + F PA+A++A M
Sbjct: 4 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 63
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N +I KP+ I + + P R VG VF+KNL +++D + L F FG
Sbjct: 64 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKSIDNKALYDTFSAFG 114
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL--------AE 207
NI+ K+V DENG SKG+ F+ F + +AA+KAI +MNG ++ FV AE
Sbjct: 115 NILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAE 173
Query: 208 IVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD---- 263
+ K F +++ N +++ +ELF++FG S ++ D
Sbjct: 174 LGAKAKEF-------------TNVYIKNFGEEVDDDNLKELFSQFGKTLSVKVMRDPSGK 220
Query: 264 -KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
K GF+ + + A AV MNG K + V
Sbjct: 221 SKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFV 254
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L++ NL+ ++D++ L EF FG++ +V ++ S+GF + F++P EA KA
Sbjct: 282 YQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKA 340
Query: 92 RVEMNGHLIGSKPVIITFVELK 113
EMNG ++GSKP+ + + K
Sbjct: 341 VTEMNGRIVGSKPLYVALAQRK 362
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITS----SSLVSDKHIGF--IEFIMPKHATHAVSTM 284
++V +L S++ + E F+ G + S +++ + +G+ + F P A A+ TM
Sbjct: 4 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 63
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N V K KP+++ S P +
Sbjct: 64 NFDVIKGKPIRIMWSQRDPSL 84
>gi|380793569|gb|AFE68660.1| polyadenylate-binding protein 4 isoform 3, partial [Macaca mulatta]
Length = 485
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 94/275 (34%), Positives = 155/275 (56%), Gaps = 13/275 (4%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S+DN+AL + F FG + +V ++N S+G+A + F T A KA +MN
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G L+ + V + + + +R +G + K++ V++KN E VD+E LK F +FG
Sbjct: 160 GMLLNDRKVFVGRFKSRK-EREAELGAKAKEFTN--VYIKNFGEEVDDESLKELFSQFGK 216
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPG 211
+ VK++RD +GKSKGFGF+ + ++ A KA+ EMNG+ I FV A+
Sbjct: 217 TLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAEL 276
Query: 212 KKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLV----SDKHIG 267
K+ F ++K + + +++ NL I++ + + F+ FG+ITS+ ++ K G
Sbjct: 277 KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFG 336
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F+ F P+ AT AV+ MNG + SKPL V L+ K
Sbjct: 337 FVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRK 371
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 128/269 (47%), Gaps = 37/269 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KP+ I + + P R VG VF+KNL +++D + L
Sbjct: 68 ALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+ F+ F + +AA+KAI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N +++ +ELF++FG S ++
Sbjct: 178 EREAELGAKAKEF-------------TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMR 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNG 286
D K GF+ + + A AV MNG
Sbjct: 225 DPSGKSKGFGFVSYEKHEDANKAVEEMNG 253
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L++ NL+ ++D++ L EF FG++ +V ++ S+GF + F++P EA KA
Sbjct: 291 YQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKA 349
Query: 92 RVEMNGHLIGSKPVIITFVELK 113
EMNG ++GSKP+ + + K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITS----SSLVSDKHIGF--IEFIMPKHATHAVSTM 284
++V +L S++ + E F+ G + S +++ + +G+ + F P A A+ TM
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N V K KP+++ S P +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSL 93
>gi|354484923|ref|XP_003504635.1| PREDICTED: polyadenylate-binding protein 1-like [Cricetulus
griseus]
Length = 672
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 99/308 (32%), Positives = 168/308 (54%), Gaps = 23/308 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KG+ + W D G R + N + + NLE S+DN+AL + F FG++
Sbjct: 141 KGQPIRIMWSH---RDPGLRKSGMGN-------IFIKNLENSIDNKALYDTFSTFGSILS 190
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V N++ SRGF + F T A+KA MNG L+ + V + + + +R +G
Sbjct: 191 SKVVYNEHG-SRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSRQ-KREAELGA 248
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
+ V+VKNL +DE+ L+ F +FG + VK++RD NG+S+GFGF+ F ++
Sbjct: 249 RALGFTN--VYVKNLHMDMDEQGLQDLFSQFGKMQSVKVMRDSNGQSRGFGFVNFEKHEE 306
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNK-----IFVANLPS 238
A+KA+ MNG+ ++ +V A+ ++ K + ++ R+N+ ++V NL
Sbjct: 307 AQKAVDHMNGKEVRGQLLYVGRAQKRAERQSELKRRFEQVKQERQNRYQGVNLYVKNLDD 366
Query: 239 NINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
+IN+ +E+F+ +G ITS+ ++++ K GF+ F P+ AT AV+ MNG + +KPL
Sbjct: 367 SINDERLKEVFSAYGVITSAKVMTESSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPL 426
Query: 295 KVTLSGTK 302
V L+ K
Sbjct: 427 YVALAQRK 434
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 84/269 (31%), Positives = 135/269 (50%), Gaps = 23/269 (8%)
Query: 35 NELHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKKARV 93
+ L+V +L P V L F GT+ +RV R+ S G+A I F PA+A++A
Sbjct: 74 SSLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALD 133
Query: 94 EMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIK 153
MN +I +P+ I + PG R +G +F+KNL ++D + L F
Sbjct: 134 TMNFEMIKGQPIRIMWSHRDPGLRKSGMG---------NIFIKNLENSIDNKALYDTFST 184
Query: 154 FGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKK 213
FG+I+ K+V +E+G S+GFGF+ F +++AA+KAI MNG ++ FV K
Sbjct: 185 FGSILSSKVVYNEHG-SRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHF------K 237
Query: 214 VFPKVKPPLLQPARK-NKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIG 267
K + L A ++V NL +++ ++LF++FG + S ++ D + G
Sbjct: 238 SRQKREAELGARALGFTNVYVKNLHMDMDEQGLQDLFSQFGKMQSVKVMRDSNGQSRGFG 297
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
F+ F + A AV MNG + + L V
Sbjct: 298 FVNFEKHEEAQKAVDHMNGKEVRGQLLYV 326
Score = 44.7 bits (104), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 6/91 (6%)
Query: 221 PLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGF--IEFIMP 274
P Q + ++V +L ++ + E+F+ GTI S + D + +G+ I F P
Sbjct: 66 PGGQACALSSLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQP 125
Query: 275 KHATHAVSTMNGHVFKSKPLKVTLSGTKPGV 305
A A+ TMN + K +P+++ S PG+
Sbjct: 126 ADAERALDTMNFEMIKGQPIRIMWSHRDPGL 156
>gi|119612224|gb|EAW91818.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_d [Homo
sapiens]
Length = 472
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 92/275 (33%), Positives = 155/275 (56%), Gaps = 13/275 (4%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S+DN+AL + F FG + +V ++N S+G+ + F T A++A +MN
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 159
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G L+ + V + + + +R +G K++ V++KN E +D+E LK F KFG
Sbjct: 160 GMLLNDRKVFVGRFKSRK-EREAELGARAKEFTN--VYIKNFGEDMDDERLKDLFGKFGP 216
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPG 211
+ VK++ DE+GKSKGFGF+ F ++ A+KA+ EMNG+ + +V A+
Sbjct: 217 ALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTEL 276
Query: 212 KKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIG 267
K+ F ++K + + ++V NL I++ + F+ FGTITS+ ++ + K G
Sbjct: 277 KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFG 336
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F+ F P+ AT AV+ MNG + +KPL V L+ K
Sbjct: 337 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 371
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 87/279 (31%), Positives = 134/279 (48%), Gaps = 37/279 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KPV I + + P R VG +F+KNL +++D + L
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVG---------NIFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+GF+ F + +AAE+AI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N ++++ ++LF +FG S +++
Sbjct: 178 EREAELGARAKEF-------------TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMT 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
D K GF+ F + A AV MNG K + V
Sbjct: 225 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>gi|431922543|gb|ELK19486.1| Polyadenylate-binding protein 4 [Pteropus alecto]
Length = 720
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 94/273 (34%), Positives = 155/273 (56%), Gaps = 13/273 (4%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+DN+AL + F FG + +V ++N S+G+A + F T A KA +MNG
Sbjct: 103 IKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGM 161
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ + V + + + +R +G + K++ V++KN E VD+E LK F +FG +
Sbjct: 162 LLNDRKVFVGRFKSRK-EREAELGAKAKEFTN--VYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKK 213
VK++RD +GKSKGFGF+ + ++ A KA+ EMNG+ I FV A+ K+
Sbjct: 219 SVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEINGKVIFVGRAQKKVERQAELKR 278
Query: 214 VFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGFI 269
F ++K + + +++ NL I++ + + F+ FG+ITS+ ++ + K GF+
Sbjct: 279 KFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFV 338
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F P+ AT AV+ MNG + SKPL V L+ K
Sbjct: 339 CFSSPEEATKAVTEMNGRIVGSKPLYVALAQRK 371
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 128/269 (47%), Gaps = 37/269 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KP+ I + + P R VG VF+KNL +++D + L
Sbjct: 68 ALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+ F+ F + +AA+KAI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N +++ +ELF++FG S ++
Sbjct: 178 EREAELGAKAKEF-------------TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMR 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNG 286
D K GF+ + + A AV MNG
Sbjct: 225 DPSGKSKGFGFVSYEKHEDANKAVEEMNG 253
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L++ NL+ ++D++ L EF FG++ +V ++ S+GF + F++P EA KA
Sbjct: 291 YQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKA 349
Query: 92 RVEMNGHLIGSKPVIITFVELK 113
EMNG ++GSKP+ + + K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
Score = 39.7 bits (91), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITS----SSLVSDKHIGF--IEFIMPKHATHAVSTM 284
++V +L S++ + E F+ G + S +++ + +G+ + F P A A+ TM
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N V K KP+++ S P +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSL 93
>gi|149023878|gb|EDL80375.1| rCG31475, isoform CRA_a [Rattus norvegicus]
Length = 660
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 93/273 (34%), Positives = 155/273 (56%), Gaps = 13/273 (4%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+DN+AL + F FG + +V ++N S+G+A + F T A KA +MNG
Sbjct: 103 IKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAANKAIEKMNGM 161
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ + V + + + +R +G + K++ V++KN E VD+E L+ F +FG +
Sbjct: 162 LLNDRKVFVGRFKSRK-EREAELGAKAKEFTN--VYIKNFGEEVDDENLRELFSQFGKTL 218
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKK 213
VK++RD +GKSKGFGF+ + ++ A KA+ EMNG+ + S FV A+ K+
Sbjct: 219 SVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKR 278
Query: 214 VFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLV----SDKHIGFI 269
F ++K + + +++ NL I++ + + F+ FG+ITS+ ++ K GF+
Sbjct: 279 KFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFV 338
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F P+ AT AV+ MNG + SKPL V L+ K
Sbjct: 339 CFSSPEEATKAVTEMNGRIVGSKPLYVALAQRK 371
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 85/279 (30%), Positives = 129/279 (46%), Gaps = 37/279 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KP+ I + + P R VG VF+KNL +++D + L
Sbjct: 68 ALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+ F+ F + +AA KAI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N +++ ELF++FG S ++
Sbjct: 178 EREAELGAKAKEF-------------TNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMR 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
D K GF+ + + A AV MNG K + V
Sbjct: 225 DCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFV 263
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L++ NL+ ++D++ L EF FG++ +V ++ S+GF + F++P EA KA
Sbjct: 291 YQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKA 349
Query: 92 RVEMNGHLIGSKPVIITFVELK 113
EMNG ++GSKP+ + + K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITS----SSLVSDKHIGF--IEFIMPKHATHAVSTM 284
++V +L S++ + E F+ G + S +++ + +G+ + F P A A+ TM
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N V K KP+++ S P +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSL 93
>gi|344287651|ref|XP_003415566.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Loxodonta
africana]
Length = 644
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 94/273 (34%), Positives = 155/273 (56%), Gaps = 13/273 (4%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+DN+AL + F FG + +V ++N S+G+A + F T A KA +MNG
Sbjct: 103 IKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGM 161
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ + V + + + +R +G + K++ V++KN E VD+E LK F +FG +
Sbjct: 162 LLNDRKVFVGRFKSRK-EREAELGAKAKEFTN--VYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKK 213
VK++RD +GKSKGFGF+ + ++ A KA+ EMNG+ I FV A+ K+
Sbjct: 219 SVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKR 278
Query: 214 VFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGFI 269
F ++K + + +++ NL I++ + + F+ FG+ITS+ ++ + K GF+
Sbjct: 279 KFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFV 338
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F P+ AT AV+ MNG + SKPL V L+ K
Sbjct: 339 CFSSPEEATKAVTEMNGRIVGSKPLYVALAQRK 371
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 128/269 (47%), Gaps = 37/269 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KP+ I + + P R VG VF+KNL +++D + L
Sbjct: 68 ALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+ F+ F + +AA+KAI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N +++ +ELF++FG S ++
Sbjct: 178 EREAELGAKAKEF-------------TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMR 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNG 286
D K GF+ + + A AV MNG
Sbjct: 225 DPSGKSKGFGFVSYEKHEDANKAVEEMNG 253
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L++ NL+ ++D++ L EF FG++ +V ++ S+GF + F++P EA KA
Sbjct: 291 YQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKA 349
Query: 92 RVEMNGHLIGSKPVIITFVELK 113
EMNG ++GSKP+ + + K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITS----SSLVSDKHIGF--IEFIMPKHATHAVSTM 284
++V +L S++ + E F+ G + S +++ + +G+ + F P A A+ TM
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N V K KP+++ S P +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSL 93
>gi|297263480|ref|XP_001096930.2| PREDICTED: polyadenylate-binding protein 3 [Macaca mulatta]
Length = 592
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 93/275 (33%), Positives = 154/275 (56%), Gaps = 13/275 (4%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S+DN+AL + F FG + +V ++N S+G+ + F T A++A +MN
Sbjct: 146 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 204
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G L+ + V + + + +R +G K++ V++KN E +D+E LK F KFG
Sbjct: 205 GMLLNDRKVFVGRFKSRK-EREAELGARAKEFTN--VYIKNFGEDMDDERLKDLFGKFGP 261
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPG 211
+ VK+V DE+GKSKGFGF+ F ++ A KA+ EMNG+ + +V A+
Sbjct: 262 ALSVKVVTDESGKSKGFGFVSFERHEDARKAVDEMNGKELNGKQIYVGRAQKKVERQTEL 321
Query: 212 KKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIG 267
K+ F ++K + + ++V NL I++ + F+ FGTITS+ ++ + K G
Sbjct: 322 KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFG 381
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F+ F P+ AT AV+ MNG + +KPL V L+ K
Sbjct: 382 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 416
>gi|73976763|ref|XP_857000.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Canis lupus
familiaris]
Length = 644
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 94/273 (34%), Positives = 155/273 (56%), Gaps = 13/273 (4%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+DN+AL + F FG + +V ++N S+G+A + F T A KA +MNG
Sbjct: 103 IKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGM 161
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ + V + + + +R +G + K++ V++KN E VD+E LK F +FG +
Sbjct: 162 LLNDRKVFVGRFKSRK-EREAELGAKAKEFTN--VYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKK 213
VK++RD +GKSKGFGF+ + ++ A KA+ EMNG+ I FV A+ K+
Sbjct: 219 SVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKR 278
Query: 214 VFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGFI 269
F ++K + + +++ NL I++ + + F+ FG+ITS+ ++ + K GF+
Sbjct: 279 KFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFV 338
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F P+ AT AV+ MNG + SKPL V L+ K
Sbjct: 339 CFSSPEEATKAVTEMNGRIVGSKPLYVALAQRK 371
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 128/269 (47%), Gaps = 37/269 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KP+ I + + P R VG VF+KNL +++D + L
Sbjct: 68 ALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+ F+ F + +AA+KAI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N +++ +ELF++FG S ++
Sbjct: 178 EREAELGAKAKEF-------------TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMR 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNG 286
D K GF+ + + A AV MNG
Sbjct: 225 DPSGKSKGFGFVSYEKHEDANKAVEEMNG 253
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L++ NL+ ++D++ L EF FG++ +V ++ S+GF + F++P EA KA
Sbjct: 291 YQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKA 349
Query: 92 RVEMNGHLIGSKPVIITFVELK 113
EMNG ++GSKP+ + + K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITS----SSLVSDKHIGF--IEFIMPKHATHAVSTM 284
++V +L S++ + E F+ G + S +++ + +G+ + F P A A+ TM
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N V K KP+++ S P +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSL 93
>gi|198386356|ref|NP_001094008.1| polyadenylate-binding protein 4 [Rattus norvegicus]
gi|183985833|gb|AAI66452.1| Pabpc4 protein [Rattus norvegicus]
Length = 644
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 93/273 (34%), Positives = 155/273 (56%), Gaps = 13/273 (4%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+DN+AL + F FG + +V ++N S+G+A + F T A KA +MNG
Sbjct: 103 IKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAANKAIEKMNGM 161
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ + V + + + +R +G + K++ V++KN E VD+E L+ F +FG +
Sbjct: 162 LLNDRKVFVGRFKSRK-EREAELGAKAKEFTN--VYIKNFGEEVDDENLRELFSQFGKTL 218
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKK 213
VK++RD +GKSKGFGF+ + ++ A KA+ EMNG+ + S FV A+ K+
Sbjct: 219 SVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKR 278
Query: 214 VFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLV----SDKHIGFI 269
F ++K + + +++ NL I++ + + F+ FG+ITS+ ++ K GF+
Sbjct: 279 KFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFV 338
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F P+ AT AV+ MNG + SKPL V L+ K
Sbjct: 339 CFSSPEEATKAVTEMNGRIVGSKPLYVALAQRK 371
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 85/279 (30%), Positives = 129/279 (46%), Gaps = 37/279 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KP+ I + + P R VG VF+KNL +++D + L
Sbjct: 68 ALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+ F+ F + +AA KAI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N +++ ELF++FG S ++
Sbjct: 178 EREAELGAKAKEF-------------TNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMR 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
D K GF+ + + A AV MNG K + V
Sbjct: 225 DCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFV 263
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L++ NL+ ++D++ L EF FG++ +V ++ S+GF + F++P EA KA
Sbjct: 291 YQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKA 349
Query: 92 RVEMNGHLIGSKPVIITFVELK 113
EMNG ++GSKP+ + + K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITS----SSLVSDKHIGF--IEFIMPKHATHAVSTM 284
++V +L S++ + E F+ G + S +++ + +G+ + F P A A+ TM
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N V K KP+++ S P +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSL 93
>gi|301790633|ref|XP_002930398.1| PREDICTED: polyadenylate-binding protein 4-like [Ailuropoda
melanoleuca]
Length = 644
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 94/273 (34%), Positives = 155/273 (56%), Gaps = 13/273 (4%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+DN+AL + F FG + +V ++N S+G+A + F T A KA +MNG
Sbjct: 103 IKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGM 161
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ + V + + + +R +G + K++ V++KN E VD+E LK F +FG +
Sbjct: 162 LLNDRKVFVGRFKSRK-EREAELGAKAKEFTN--VYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKK 213
VK++RD +GKSKGFGF+ + ++ A KA+ EMNG+ I FV A+ K+
Sbjct: 219 SVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKR 278
Query: 214 VFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGFI 269
F ++K + + +++ NL I++ + + F+ FG+ITS+ ++ + K GF+
Sbjct: 279 KFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFV 338
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F P+ AT AV+ MNG + SKPL V L+ K
Sbjct: 339 CFSSPEEATKAVTEMNGRIVGSKPLYVALAQRK 371
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 82/269 (30%), Positives = 127/269 (47%), Gaps = 37/269 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L V L +F G + + V R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIWVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KP+ I + + P R VG VF+KNL +++D + L
Sbjct: 68 ALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+ F+ F + +AA+KAI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N +++ +ELF++FG S ++
Sbjct: 178 EREAELGAKAKEF-------------TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMR 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNG 286
D K GF+ + + A AV MNG
Sbjct: 225 DPSGKSKGFGFVSYEKHEDANKAVEEMNG 253
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L++ NL+ ++D++ L EF FG++ +V ++ S+GF + F++P EA KA
Sbjct: 291 YQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKA 349
Query: 92 RVEMNGHLIGSKPVIITFVELK 113
EMNG ++GSKP+ + + K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITS----SSLVSDKHIGF--IEFIMPKHATHAVSTM 284
++V +L S++ + E F+ G + S +++ + +G+ + F P A A+ TM
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIWVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N V K KP+++ S P +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSL 93
>gi|149693775|ref|XP_001503500.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Equus
caballus]
Length = 644
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 94/273 (34%), Positives = 154/273 (56%), Gaps = 13/273 (4%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+DN+AL + F FG + +V ++N S+G+A + F T A KA +MNG
Sbjct: 103 IKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGM 161
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ + V + + + +R +G + K++ V++KN E VD+E LK F +FG +
Sbjct: 162 LLNDRKVFVGRFKSRK-EREAELGAKAKEFTN--VYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKK 213
VK++RD +GKSKGFGF+ + ++ A KA+ EMNG+ I FV A+ K+
Sbjct: 219 SVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKR 278
Query: 214 VFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLV----SDKHIGFI 269
F ++K + + +++ NL I++ + + F+ FG+ITS+ ++ K GF+
Sbjct: 279 KFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFV 338
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F P+ AT AV+ MNG + SKPL V L+ K
Sbjct: 339 CFSSPEEATKAVTEMNGRIVGSKPLYVALAQRK 371
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 128/269 (47%), Gaps = 37/269 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KP+ I + + P R VG VF+KNL +++D + L
Sbjct: 68 ALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+ F+ F + +AA+KAI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N +++ +ELF++FG S ++
Sbjct: 178 EREAELGAKAKEF-------------TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMR 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNG 286
D K GF+ + + A AV MNG
Sbjct: 225 DPSGKSKGFGFVSYEKHEDANKAVEEMNG 253
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L++ NL+ ++D++ L EF FG++ +V ++ S+GF + F++P EA KA
Sbjct: 291 YQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKA 349
Query: 92 RVEMNGHLIGSKPVIITFVELK 113
EMNG ++GSKP+ + + K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITS----SSLVSDKHIGF--IEFIMPKHATHAVSTM 284
++V +L S++ + E F+ G + S +++ + +G+ + F P A A+ TM
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N V K KP+++ S P +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSL 93
>gi|395853070|ref|XP_003799043.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Otolemur
garnettii]
Length = 646
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 94/273 (34%), Positives = 154/273 (56%), Gaps = 13/273 (4%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+DN+AL + F FG + +V ++N S+G+A + F T A KA +MNG
Sbjct: 103 IKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGM 161
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ + V + + + +R +G + K++ V++KN E VD+E LK F +FG +
Sbjct: 162 LLNDRKVFVGRFKSRK-EREAELGAKAKEFTN--VYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKK 213
VK++RD +GKSKGFGF+ + ++ A KA+ EMNG+ I FV A+ K+
Sbjct: 219 SVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKR 278
Query: 214 VFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLV----SDKHIGFI 269
F ++K + + +++ NL I++ + + F+ FG+ITS+ ++ K GF+
Sbjct: 279 KFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFV 338
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F P+ AT AV+ MNG + SKPL V L+ K
Sbjct: 339 CFSSPEEATKAVTEMNGRIVGSKPLYVALAQRK 371
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 128/269 (47%), Gaps = 37/269 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KP+ I + + P R VG VF+KNL +++D + L
Sbjct: 68 ALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+ F+ F + +AA+KAI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N +++ +ELF++FG S ++
Sbjct: 178 EREAELGAKAKEF-------------TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMR 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNG 286
D K GF+ + + A AV MNG
Sbjct: 225 DPSGKSKGFGFVSYEKHEDANKAVEEMNG 253
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L++ NL+ ++D++ L EF FG++ +V ++ S+GF + F++P EA KA
Sbjct: 291 YQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKA 349
Query: 92 RVEMNGHLIGSKPVIITFVELK 113
EMNG ++GSKP+ + + K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITS----SSLVSDKHIGF--IEFIMPKHATHAVSTM 284
++V +L S++ + E F+ G + S +++ + +G+ + F P A A+ TM
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N V K KP+++ S P +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSL 93
>gi|410966842|ref|XP_003989936.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Felis catus]
Length = 644
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 94/273 (34%), Positives = 154/273 (56%), Gaps = 13/273 (4%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+DN+AL + F FG + +V ++N S+G+A + F T A KA +MNG
Sbjct: 103 IKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGM 161
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ + V + + + +R +G + K++ V++KN E VD+E LK F +FG +
Sbjct: 162 LLNDRKVFVGRFKSRK-EREAELGAKAKEFTN--VYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKK 213
VK++RD +GKSKGFGF+ + ++ A KA+ EMNG+ I FV A+ K+
Sbjct: 219 SVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKR 278
Query: 214 VFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLV----SDKHIGFI 269
F ++K + + +++ NL I++ + + F+ FG+ITS+ ++ K GF+
Sbjct: 279 KFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFV 338
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F P+ AT AV+ MNG + SKPL V L+ K
Sbjct: 339 CFSSPEEATKAVTEMNGRIVGSKPLYVALAQRK 371
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 128/269 (47%), Gaps = 37/269 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KP+ I + + P R VG VF+KNL +++D + L
Sbjct: 68 ALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+ F+ F + +AA+KAI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N +++ +ELF++FG S ++
Sbjct: 178 EREAELGAKAKEF-------------TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMR 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNG 286
D K GF+ + + A AV MNG
Sbjct: 225 DPSGKSKGFGFVSYEKHEDANKAVEEMNG 253
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L++ NL+ ++D++ L EF FG++ +V ++ S+GF + F++P EA KA
Sbjct: 291 YQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKA 349
Query: 92 RVEMNGHLIGSKPVIITFVELK 113
EMNG ++GSKP+ + + K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITS----SSLVSDKHIGF--IEFIMPKHATHAVSTM 284
++V +L S++ + E F+ G + S +++ + +G+ + F P A A+ TM
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N V K KP+++ S P +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSL 93
>gi|149023880|gb|EDL80377.1| rCG31475, isoform CRA_c [Rattus norvegicus]
Length = 630
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 93/273 (34%), Positives = 155/273 (56%), Gaps = 13/273 (4%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+DN+AL + F FG + +V ++N S+G+A + F T A KA +MNG
Sbjct: 103 IKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAANKAIEKMNGM 161
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ + V + + + +R +G + K++ V++KN E VD+E L+ F +FG +
Sbjct: 162 LLNDRKVFVGRFKSRK-EREAELGAKAKEFTN--VYIKNFGEEVDDENLRELFSQFGKTL 218
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKK 213
VK++RD +GKSKGFGF+ + ++ A KA+ EMNG+ + S FV A+ K+
Sbjct: 219 SVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKR 278
Query: 214 VFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLV----SDKHIGFI 269
F ++K + + +++ NL I++ + + F+ FG+ITS+ ++ K GF+
Sbjct: 279 KFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFV 338
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F P+ AT AV+ MNG + SKPL V L+ K
Sbjct: 339 CFSSPEEATKAVTEMNGRIVGSKPLYVALAQRK 371
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 85/279 (30%), Positives = 129/279 (46%), Gaps = 37/279 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KP+ I + + P R VG VF+KNL +++D + L
Sbjct: 68 ALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+ F+ F + +AA KAI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N +++ ELF++FG S ++
Sbjct: 178 EREAELGAKAKEF-------------TNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMR 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
D K GF+ + + A AV MNG K + V
Sbjct: 225 DCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFV 263
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L++ NL+ ++D++ L EF FG++ +V ++ S+GF + F++P EA KA
Sbjct: 291 YQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKA 349
Query: 92 RVEMNGHLIGSKPVIITFVELK 113
EMNG ++GSKP+ + + K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITS----SSLVSDKHIGF--IEFIMPKHATHAVSTM 284
++V +L S++ + E F+ G + S +++ + +G+ + F P A A+ TM
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N V K KP+++ S P +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSL 93
>gi|149023879|gb|EDL80376.1| rCG31475, isoform CRA_b [Rattus norvegicus]
Length = 656
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 93/273 (34%), Positives = 155/273 (56%), Gaps = 13/273 (4%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+DN+AL + F FG + +V ++N S+G+A + F T A KA +MNG
Sbjct: 103 IKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAANKAIEKMNGM 161
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ + V + + + +R +G + K++ V++KN E VD+E L+ F +FG +
Sbjct: 162 LLNDRKVFVGRFKSRK-EREAELGAKAKEFTN--VYIKNFGEEVDDENLRELFSQFGKTL 218
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKK 213
VK++RD +GKSKGFGF+ + ++ A KA+ EMNG+ + S FV A+ K+
Sbjct: 219 SVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKR 278
Query: 214 VFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLV----SDKHIGFI 269
F ++K + + +++ NL I++ + + F+ FG+ITS+ ++ K GF+
Sbjct: 279 KFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFV 338
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F P+ AT AV+ MNG + SKPL V L+ K
Sbjct: 339 CFSSPEEATKAVTEMNGRIVGSKPLYVALAQRK 371
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 85/279 (30%), Positives = 129/279 (46%), Gaps = 37/279 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KP+ I + + P R VG VF+KNL +++D + L
Sbjct: 68 ALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+ F+ F + +AA KAI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N +++ ELF++FG S ++
Sbjct: 178 EREAELGAKAKEF-------------TNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMR 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
D K GF+ + + A AV MNG K + V
Sbjct: 225 DCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFV 263
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L++ NL+ ++D++ L EF FG++ +V ++ S+GF + F++P EA KA
Sbjct: 291 YQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKA 349
Query: 92 RVEMNGHLIGSKPVIITFVELK 113
EMNG ++GSKP+ + + K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITS----SSLVSDKHIGF--IEFIMPKHATHAVSTM 284
++V +L S++ + E F+ G + S +++ + +G+ + F P A A+ TM
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N V K KP+++ S P +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSL 93
>gi|344287653|ref|XP_003415567.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Loxodonta
africana]
Length = 660
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 94/273 (34%), Positives = 154/273 (56%), Gaps = 13/273 (4%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+DN+AL + F FG + +V ++N S+G+A + F T A KA +MNG
Sbjct: 103 IKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGM 161
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ + V + + + +R +G + K++ V++KN E VD+E LK F +FG +
Sbjct: 162 LLNDRKVFVGRFKSRK-EREAELGAKAKEFTN--VYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKK 213
VK++RD +GKSKGFGF+ + ++ A KA+ EMNG+ I FV A+ K+
Sbjct: 219 SVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKR 278
Query: 214 VFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLV----SDKHIGFI 269
F ++K + + +++ NL I++ + + F+ FG+ITS+ ++ K GF+
Sbjct: 279 KFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFV 338
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F P+ AT AV+ MNG + SKPL V L+ K
Sbjct: 339 CFSSPEEATKAVTEMNGRIVGSKPLYVALAQRK 371
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 128/269 (47%), Gaps = 37/269 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KP+ I + + P R VG VF+KNL +++D + L
Sbjct: 68 ALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+ F+ F + +AA+KAI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N +++ +ELF++FG S ++
Sbjct: 178 EREAELGAKAKEF-------------TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMR 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNG 286
D K GF+ + + A AV MNG
Sbjct: 225 DPSGKSKGFGFVSYEKHEDANKAVEEMNG 253
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L++ NL+ ++D++ L EF FG++ +V ++ S+GF + F++P EA KA
Sbjct: 291 YQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKA 349
Query: 92 RVEMNGHLIGSKPVIITFVELK 113
EMNG ++GSKP+ + + K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITS----SSLVSDKHIGF--IEFIMPKHATHAVSTM 284
++V +L S++ + E F+ G + S +++ + +G+ + F P A A+ TM
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N V K KP+++ S P +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSL 93
>gi|344287655|ref|XP_003415568.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Loxodonta
africana]
Length = 631
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 101/308 (32%), Positives = 165/308 (53%), Gaps = 23/308 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK + W + D R + N + + NL+ S+DN+AL + F FG +
Sbjct: 78 KGKPIRIMWSQ---RDPSLRKSGVGN-------VFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V ++N S+G+A + F T A KA +MNG L+ + V + + + +R +G
Sbjct: 128 CKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK-EREAELGA 185
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
+ K++ V++KN E VD+E LK F +FG + VK++RD +GKSKGFGF+ + ++
Sbjct: 186 KAKEFTN--VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHED 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A KA+ EMNG+ I FV A+ K+ F ++K + + +++ NL
Sbjct: 244 ANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 239 NINNSEFEELFARFGTITSSSLV----SDKHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
I++ + + F+ FG+ITS+ ++ K GF+ F P+ AT AV+ MNG + SKPL
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPL 363
Query: 295 KVTLSGTK 302
V L+ K
Sbjct: 364 YVALAQRK 371
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 128/269 (47%), Gaps = 37/269 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KP+ I + + P R VG VF+KNL +++D + L
Sbjct: 68 ALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+ F+ F + +AA+KAI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N +++ +ELF++FG S ++
Sbjct: 178 EREAELGAKAKEF-------------TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMR 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNG 286
D K GF+ + + A AV MNG
Sbjct: 225 DPSGKSKGFGFVSYEKHEDANKAVEEMNG 253
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITS----SSLVSDKHIGF--IEFIMPKHATHAVSTM 284
++V +L S++ + E F+ G + S +++ + +G+ + F P A A+ TM
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N V K KP+++ S P +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSL 93
>gi|410966844|ref|XP_003989937.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Felis catus]
Length = 631
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 101/308 (32%), Positives = 165/308 (53%), Gaps = 23/308 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK + W + D R + N + + NL+ S+DN+AL + F FG +
Sbjct: 78 KGKPIRIMWSQ---RDPSLRKSGVGN-------VFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V ++N S+G+A + F T A KA +MNG L+ + V + + + +R +G
Sbjct: 128 CKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK-EREAELGA 185
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
+ K++ V++KN E VD+E LK F +FG + VK++RD +GKSKGFGF+ + ++
Sbjct: 186 KAKEF--TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHED 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A KA+ EMNG+ I FV A+ K+ F ++K + + +++ NL
Sbjct: 244 ANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 239 NINNSEFEELFARFGTITSSSLV----SDKHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
I++ + + F+ FG+ITS+ ++ K GF+ F P+ AT AV+ MNG + SKPL
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPL 363
Query: 295 KVTLSGTK 302
V L+ K
Sbjct: 364 YVALAQRK 371
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 128/269 (47%), Gaps = 37/269 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KP+ I + + P R VG VF+KNL +++D + L
Sbjct: 68 ALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+ F+ F + +AA+KAI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N +++ +ELF++FG S ++
Sbjct: 178 EREAELGAKAKEF-------------TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMR 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNG 286
D K GF+ + + A AV MNG
Sbjct: 225 DPSGKSKGFGFVSYEKHEDANKAVEEMNG 253
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITS----SSLVSDKHIGF--IEFIMPKHATHAVSTM 284
++V +L S++ + E F+ G + S +++ + +G+ + F P A A+ TM
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N V K KP+++ S P +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSL 93
>gi|395853068|ref|XP_003799042.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Otolemur
garnettii]
Length = 662
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 94/273 (34%), Positives = 154/273 (56%), Gaps = 13/273 (4%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+DN+AL + F FG + +V ++N S+G+A + F T A KA +MNG
Sbjct: 103 IKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGM 161
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ + V + + + +R +G + K++ V++KN E VD+E LK F +FG +
Sbjct: 162 LLNDRKVFVGRFKSRK-EREAELGAKAKEFTN--VYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKK 213
VK++RD +GKSKGFGF+ + ++ A KA+ EMNG+ I FV A+ K+
Sbjct: 219 SVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKR 278
Query: 214 VFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLV----SDKHIGFI 269
F ++K + + +++ NL I++ + + F+ FG+ITS+ ++ K GF+
Sbjct: 279 KFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFV 338
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F P+ AT AV+ MNG + SKPL V L+ K
Sbjct: 339 CFSSPEEATKAVTEMNGRIVGSKPLYVALAQRK 371
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 128/269 (47%), Gaps = 37/269 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KP+ I + + P R VG VF+KNL +++D + L
Sbjct: 68 ALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+ F+ F + +AA+KAI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N +++ +ELF++FG S ++
Sbjct: 178 EREAELGAKAKEF-------------TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMR 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNG 286
D K GF+ + + A AV MNG
Sbjct: 225 DPSGKSKGFGFVSYEKHEDANKAVEEMNG 253
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L++ NL+ ++D++ L EF FG++ +V ++ S+GF + F++P EA KA
Sbjct: 291 YQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKA 349
Query: 92 RVEMNGHLIGSKPVIITFVELK 113
EMNG ++GSKP+ + + K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITS----SSLVSDKHIGF--IEFIMPKHATHAVSTM 284
++V +L S++ + E F+ G + S +++ + +G+ + F P A A+ TM
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N V K KP+++ S P +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSL 93
>gi|338721949|ref|XP_003364451.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Equus
caballus]
Length = 660
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 94/273 (34%), Positives = 154/273 (56%), Gaps = 13/273 (4%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+DN+AL + F FG + +V ++N S+G+A + F T A KA +MNG
Sbjct: 103 IKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGM 161
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ + V + + + +R +G + K++ V++KN E VD+E LK F +FG +
Sbjct: 162 LLNDRKVFVGRFKSRK-EREAELGAKAKEFTN--VYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKK 213
VK++RD +GKSKGFGF+ + ++ A KA+ EMNG+ I FV A+ K+
Sbjct: 219 SVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKR 278
Query: 214 VFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLV----SDKHIGFI 269
F ++K + + +++ NL I++ + + F+ FG+ITS+ ++ K GF+
Sbjct: 279 KFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFV 338
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F P+ AT AV+ MNG + SKPL V L+ K
Sbjct: 339 CFSSPEEATKAVTEMNGRIVGSKPLYVALAQRK 371
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 128/269 (47%), Gaps = 37/269 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KP+ I + + P R VG VF+KNL +++D + L
Sbjct: 68 ALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+ F+ F + +AA+KAI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N +++ +ELF++FG S ++
Sbjct: 178 EREAELGAKAKEF-------------TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMR 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNG 286
D K GF+ + + A AV MNG
Sbjct: 225 DPSGKSKGFGFVSYEKHEDANKAVEEMNG 253
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L++ NL+ ++D++ L EF FG++ +V ++ S+GF + F++P EA KA
Sbjct: 291 YQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKA 349
Query: 92 RVEMNGHLIGSKPVIITFVELK 113
EMNG ++GSKP+ + + K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITS----SSLVSDKHIGF--IEFIMPKHATHAVSTM 284
++V +L S++ + E F+ G + S +++ + +G+ + F P A A+ TM
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N V K KP+++ S P +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSL 93
>gi|402854027|ref|XP_003891682.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Papio anubis]
Length = 660
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 94/273 (34%), Positives = 154/273 (56%), Gaps = 13/273 (4%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+DN+AL + F FG + +V ++N S+G+A + F T A KA +MNG
Sbjct: 103 IKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGM 161
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ + V + + + +R +G + K++ V++KN E VD+E LK F +FG +
Sbjct: 162 LLNDRKVFVGRFKSRK-EREAELGAKAKEFTN--VYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKK 213
VK++RD +GKSKGFGF+ + ++ A KA+ EMNG+ I FV A+ K+
Sbjct: 219 SVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKR 278
Query: 214 VFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLV----SDKHIGFI 269
F ++K + + +++ NL I++ + + F+ FG+ITS+ ++ K GF+
Sbjct: 279 KFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFV 338
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F P+ AT AV+ MNG + SKPL V L+ K
Sbjct: 339 CFSSPEEATKAVTEMNGRIVGSKPLYVALAQRK 371
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 128/269 (47%), Gaps = 37/269 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KP+ I + + P R VG VF+KNL +++D + L
Sbjct: 68 ALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+ F+ F + +AA+KAI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N +++ +ELF++FG S ++
Sbjct: 178 EREAELGAKAKEF-------------TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMR 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNG 286
D K GF+ + + A AV MNG
Sbjct: 225 DPSGKSKGFGFVSYEKHEDANKAVEEMNG 253
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L++ NL+ ++D++ L EF FG++ +V ++ S+GF + F++P EA KA
Sbjct: 291 YQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKA 349
Query: 92 RVEMNGHLIGSKPVIITFVELK 113
EMNG ++GSKP+ + + K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITS----SSLVSDKHIGF--IEFIMPKHATHAVSTM 284
++V +L S++ + E F+ G + S +++ + +G+ + F P A A+ TM
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N V K KP+++ S P +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSL 93
>gi|332248415|ref|XP_003273359.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Nomascus
leucogenys]
gi|383411101|gb|AFH28764.1| polyadenylate-binding protein 4 isoform 2 [Macaca mulatta]
gi|384941236|gb|AFI34223.1| polyadenylate-binding protein 4 isoform 2 [Macaca mulatta]
Length = 644
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 94/273 (34%), Positives = 154/273 (56%), Gaps = 13/273 (4%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+DN+AL + F FG + +V ++N S+G+A + F T A KA +MNG
Sbjct: 103 IKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGM 161
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ + V + + + +R +G + K++ V++KN E VD+E LK F +FG +
Sbjct: 162 LLNDRKVFVGRFKSRK-EREAELGAKAKEFTN--VYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKK 213
VK++RD +GKSKGFGF+ + ++ A KA+ EMNG+ I FV A+ K+
Sbjct: 219 SVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKR 278
Query: 214 VFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLV----SDKHIGFI 269
F ++K + + +++ NL I++ + + F+ FG+ITS+ ++ K GF+
Sbjct: 279 KFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFV 338
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F P+ AT AV+ MNG + SKPL V L+ K
Sbjct: 339 CFSSPEEATKAVTEMNGRIVGSKPLYVALAQRK 371
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 128/269 (47%), Gaps = 37/269 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KP+ I + + P R VG VF+KNL +++D + L
Sbjct: 68 ALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+ F+ F + +AA+KAI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N +++ +ELF++FG S ++
Sbjct: 178 EREAELGAKAKEF-------------TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMR 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNG 286
D K GF+ + + A AV MNG
Sbjct: 225 DPSGKSKGFGFVSYEKHEDANKAVEEMNG 253
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L++ NL+ ++D++ L EF FG++ +V ++ S+GF + F++P EA KA
Sbjct: 291 YQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKA 349
Query: 92 RVEMNGHLIGSKPVIITFVELK 113
EMNG ++GSKP+ + + K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITS----SSLVSDKHIGF--IEFIMPKHATHAVSTM 284
++V +L S++ + E F+ G + S +++ + +G+ + F P A A+ TM
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N V K KP+++ S P +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSL 93
>gi|355745175|gb|EHH49800.1| hypothetical protein EGM_00521 [Macaca fascicularis]
Length = 635
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 94/273 (34%), Positives = 154/273 (56%), Gaps = 13/273 (4%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+DN+AL + F FG + +V ++N S+G+A + F T A KA +MNG
Sbjct: 78 IKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGM 136
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ + V + + + +R +G + K++ V++KN E VD+E LK F +FG +
Sbjct: 137 LLNDRKVFVGRFKSRK-EREAELGAKAKEFTN--VYIKNFGEEVDDESLKELFSQFGKTL 193
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKK 213
VK++RD +GKSKGFGF+ + ++ A KA+ EMNG+ I FV A+ K+
Sbjct: 194 SVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKR 253
Query: 214 VFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLV----SDKHIGFI 269
F ++K + + +++ NL I++ + + F+ FG+ITS+ ++ K GF+
Sbjct: 254 KFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFV 313
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F P+ AT AV+ MNG + SKPL V L+ K
Sbjct: 314 CFSSPEEATKAVTEMNGRIVGSKPLYVALAQRK 346
Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 78/250 (31%), Positives = 121/250 (48%), Gaps = 37/250 (14%)
Query: 51 LINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITF 109
L +F G + +RV R+ S G+A + F PA+A++A MN +I KP+ I +
Sbjct: 2 LYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMW 61
Query: 110 VELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGK 169
+ P R VG VF+KNL +++D + L F FGNI+ K+V DENG
Sbjct: 62 SQRDPSLRKSGVG---------NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG- 111
Query: 170 SKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL--------AEIVPGKKVFPKVKPP 221
SKG+ F+ F + +AA+KAI +MNG ++ FV AE+ K F
Sbjct: 112 SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEF------ 165
Query: 222 LLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKH 276
+++ N +++ +ELF++FG S ++ D K GF+ + +
Sbjct: 166 -------TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHED 218
Query: 277 ATHAVSTMNG 286
A AV MNG
Sbjct: 219 ANKAVEEMNG 228
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L++ NL+ ++D++ L EF FG++ +V ++ S+GF + F++P EA KA
Sbjct: 266 YQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKA 324
Query: 92 RVEMNGHLIGSKPVIITFVELK 113
EMNG ++GSKP+ + + K
Sbjct: 325 VTEMNGRIVGSKPLYVALAQRK 346
>gi|351713677|gb|EHB16596.1| Polyadenylate-binding protein 4 [Heterocephalus glaber]
Length = 661
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 94/273 (34%), Positives = 154/273 (56%), Gaps = 13/273 (4%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+DN+AL + F FG + +V ++N S+G+A + F T A KA +MNG
Sbjct: 103 IKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGM 161
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ + V + + + +R +G + K++ V++KN E VD+E LK F +FG +
Sbjct: 162 LLNDRKVFVGRFKSRK-EREAELGAKAKEFTN--VYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKK 213
VK++RD +GKSKGFGF+ + ++ A KA+ EMNG+ I FV A+ K+
Sbjct: 219 SVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKR 278
Query: 214 VFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLV----SDKHIGFI 269
F ++K + + +++ NL I++ + + F+ FG+ITS+ ++ K GF+
Sbjct: 279 KFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFV 338
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F P+ AT AV+ MNG + SKPL V L+ K
Sbjct: 339 CFSSPEEATKAVTEMNGRIVGSKPLYVALAQRK 371
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 128/269 (47%), Gaps = 37/269 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KP+ I + + P R VG VF+KNL +++D + L
Sbjct: 68 ALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+ F+ F + +AA+KAI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N +++ +ELF++FG S ++
Sbjct: 178 EREAELGAKAKEF-------------TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMR 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNG 286
D K GF+ + + A AV MNG
Sbjct: 225 DPSGKSKGFGFVSYEKHEDANKAVEEMNG 253
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L++ NL+ ++D++ L EF FG++ +V ++ S+GF + F++P EA KA
Sbjct: 291 YQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKA 349
Query: 92 RVEMNGHLIGSKPVIITFVELK 113
EMNG ++GSKP+ + + K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITS----SSLVSDKHIGF--IEFIMPKHATHAVSTM 284
++V +L S++ + E F+ G + S +++ + +G+ + F P A A+ TM
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N V K KP+++ S P +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSL 93
>gi|41053728|ref|NP_957176.1| poly A binding protein, cytoplasmic 1 b [Danio rerio]
gi|37590406|gb|AAH59662.1| Poly A binding protein, cytoplasmic 1 b [Danio rerio]
gi|39645430|gb|AAH63948.1| Poly A binding protein, cytoplasmic 1 b [Danio rerio]
Length = 634
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 89/275 (32%), Positives = 157/275 (57%), Gaps = 13/275 (4%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S+DN+AL + F FG + +V ++N S+G+ + F T A++A +MN
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 159
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G L+ + V + + + +R +G K++ V++KN E +D+++LK F K+GN
Sbjct: 160 GMLLNDRKVFVGRFKSR-KEREAELGARAKEFTN--VYIKNFGEDMDDDKLKDIFSKYGN 216
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPG 211
+ ++++ DENGKS+GFGF+ F ++ A++A+ EMNG+ + +V A+
Sbjct: 217 AMSIRVMTDENGKSRGFGFVSFERHEDAQRAVDEMNGKEMNGKLIYVGRAQKKVERQTEL 276
Query: 212 KKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIG 267
K+ F ++K + + ++V NL I++ + F+ FGTITS+ ++ D K G
Sbjct: 277 KRKFEQMKQDRMTRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMDGGRSKGFG 336
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F+ F P+ AT AV+ MNG + +KPL V L+ K
Sbjct: 337 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 371
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 82/279 (29%), Positives = 136/279 (48%), Gaps = 37/279 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I +PV I + + P R VG +F+KNL +++D + L
Sbjct: 68 ALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVG---------NIFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+GF+ F + +AAE+AI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N ++++ + +++F+++G S +++
Sbjct: 178 EREAELGARAKEF-------------TNVYIKNFGEDMDDDKLKDIFSKYGNAMSIRVMT 224
Query: 263 DKH-----IGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
D++ GF+ F + A AV MNG K + V
Sbjct: 225 DENGKSRGFGFVSFERHEDAQRAVDEMNGKEMNGKLIYV 263
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L+V NL+ +D++ L EF FGT+ +V + S+GF + F++P EA KA
Sbjct: 291 YQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMD-GGRSKGFGFVCFSSPEEATKA 349
Query: 92 RVEMNGHLIGSKPVIITFVELK 113
EMNG ++ +KP+ + + K
Sbjct: 350 VTEMNGRIVATKPLYVALAQRK 371
>gi|291399204|ref|XP_002715240.1| PREDICTED: poly A binding protein, cytoplasmic 4-like [Oryctolagus
cuniculus]
Length = 644
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 94/273 (34%), Positives = 155/273 (56%), Gaps = 13/273 (4%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+DN+AL + F FG + +V ++N S+G+A + F T A KA +MNG
Sbjct: 103 IKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGM 161
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ + V + + + +R +G + K++ V++KN E VD+E LK F +FG +
Sbjct: 162 LLNDRKVFVGRFKSRK-EREAELGAKAKEFTN--VYIKNFGEEVDDESLKDLFSQFGKTL 218
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKK 213
VK++RD +GKSKGFGF+ + ++ A KA+ EMNG+ I FV A+ K+
Sbjct: 219 SVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEIGGKVIFVGRAQKKVERQAELKR 278
Query: 214 VFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGFI 269
F ++K + + +++ NL I++ + + F+ FG+ITS+ ++ + K GF+
Sbjct: 279 KFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFV 338
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F P+ AT AV+ MNG + SKPL V L+ K
Sbjct: 339 CFSSPEEATKAVTEMNGRIVGSKPLYVALAQRK 371
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 82/269 (30%), Positives = 128/269 (47%), Gaps = 37/269 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KP+ I + + P R VG VF+KNL +++D + L
Sbjct: 68 ALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+ F+ F + +AA+KAI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N +++ ++LF++FG S ++
Sbjct: 178 EREAELGAKAKEF-------------TNVYIKNFGEEVDDESLKDLFSQFGKTLSVKVMR 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNG 286
D K GF+ + + A AV MNG
Sbjct: 225 DPSGKSKGFGFVSYEKHEDANKAVEEMNG 253
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L++ NL+ ++D++ L EF FG++ +V ++ S+GF + F++P EA KA
Sbjct: 291 YQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKA 349
Query: 92 RVEMNGHLIGSKPVIITFVELK 113
EMNG ++GSKP+ + + K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITS----SSLVSDKHIGF--IEFIMPKHATHAVSTM 284
++V +L S++ + E F+ G + S +++ + +G+ + F P A A+ TM
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N V K KP+++ S P +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSL 93
>gi|410966840|ref|XP_003989935.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Felis catus]
Length = 660
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 94/273 (34%), Positives = 154/273 (56%), Gaps = 13/273 (4%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+DN+AL + F FG + +V ++N S+G+A + F T A KA +MNG
Sbjct: 103 IKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGM 161
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ + V + + + +R +G + K++ V++KN E VD+E LK F +FG +
Sbjct: 162 LLNDRKVFVGRFKSRK-EREAELGAKAKEFTN--VYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKK 213
VK++RD +GKSKGFGF+ + ++ A KA+ EMNG+ I FV A+ K+
Sbjct: 219 SVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKR 278
Query: 214 VFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLV----SDKHIGFI 269
F ++K + + +++ NL I++ + + F+ FG+ITS+ ++ K GF+
Sbjct: 279 KFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFV 338
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F P+ AT AV+ MNG + SKPL V L+ K
Sbjct: 339 CFSSPEEATKAVTEMNGRIVGSKPLYVALAQRK 371
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 128/269 (47%), Gaps = 37/269 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KP+ I + + P R VG VF+KNL +++D + L
Sbjct: 68 ALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+ F+ F + +AA+KAI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N +++ +ELF++FG S ++
Sbjct: 178 EREAELGAKAKEF-------------TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMR 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNG 286
D K GF+ + + A AV MNG
Sbjct: 225 DPSGKSKGFGFVSYEKHEDANKAVEEMNG 253
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L++ NL+ ++D++ L EF FG++ +V ++ S+GF + F++P EA KA
Sbjct: 291 YQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKA 349
Query: 92 RVEMNGHLIGSKPVIITFVELK 113
EMNG ++GSKP+ + + K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITS----SSLVSDKHIGF--IEFIMPKHATHAVSTM 284
++V +L S++ + E F+ G + S +++ + +G+ + F P A A+ TM
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N V K KP+++ S P +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSL 93
>gi|402854029|ref|XP_003891683.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Papio anubis]
Length = 644
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 94/273 (34%), Positives = 154/273 (56%), Gaps = 13/273 (4%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+DN+AL + F FG + +V ++N S+G+A + F T A KA +MNG
Sbjct: 103 IKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGM 161
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ + V + + + +R +G + K++ V++KN E VD+E LK F +FG +
Sbjct: 162 LLNDRKVFVGRFKSRK-EREAELGAKAKEFTN--VYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKK 213
VK++RD +GKSKGFGF+ + ++ A KA+ EMNG+ I FV A+ K+
Sbjct: 219 SVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKR 278
Query: 214 VFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLV----SDKHIGFI 269
F ++K + + +++ NL I++ + + F+ FG+ITS+ ++ K GF+
Sbjct: 279 KFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFV 338
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F P+ AT AV+ MNG + SKPL V L+ K
Sbjct: 339 CFSSPEEATKAVTEMNGRIVGSKPLYVALAQRK 371
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 128/269 (47%), Gaps = 37/269 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KP+ I + + P R VG VF+KNL +++D + L
Sbjct: 68 ALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+ F+ F + +AA+KAI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N +++ +ELF++FG S ++
Sbjct: 178 EREAELGAKAKEF-------------TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMR 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNG 286
D K GF+ + + A AV MNG
Sbjct: 225 DPSGKSKGFGFVSYEKHEDANKAVEEMNG 253
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L++ NL+ ++D++ L EF FG++ +V ++ S+GF + F++P EA KA
Sbjct: 291 YQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKA 349
Query: 92 RVEMNGHLIGSKPVIITFVELK 113
EMNG ++GSKP+ + + K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITS----SSLVSDKHIGF--IEFIMPKHATHAVSTM 284
++V +L S++ + E F+ G + S +++ + +G+ + F P A A+ TM
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N V K KP+++ S P +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSL 93
>gi|395853072|ref|XP_003799044.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Otolemur
garnettii]
Length = 633
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 101/308 (32%), Positives = 166/308 (53%), Gaps = 23/308 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK + W + D R + N + + NL+ S+DN+AL + F FG +
Sbjct: 78 KGKPIRIMWSQ---RDPSLRKSGVGN-------VFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V ++N S+G+A + F T A KA +MNG L+ + V + + + +R +G
Sbjct: 128 CKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK-EREAELGA 185
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
+ K++ V++KN E VD+E LK F +FG + VK++RD +GKSKGFGF+ + ++
Sbjct: 186 KAKEF--TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHED 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A KA+ EMNG+ I FV A+ K+ F ++K + + +++ NL
Sbjct: 244 ANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 239 NINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
I++ + + F+ FG+ITS+ ++ + K GF+ F P+ AT AV+ MNG + SKPL
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPL 363
Query: 295 KVTLSGTK 302
V L+ K
Sbjct: 364 YVALAQRK 371
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 128/269 (47%), Gaps = 37/269 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KP+ I + + P R VG VF+KNL +++D + L
Sbjct: 68 ALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+ F+ F + +AA+KAI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N +++ +ELF++FG S ++
Sbjct: 178 EREAELGAKAKEF-------------TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMR 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNG 286
D K GF+ + + A AV MNG
Sbjct: 225 DPSGKSKGFGFVSYEKHEDANKAVEEMNG 253
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITS----SSLVSDKHIGF--IEFIMPKHATHAVSTM 284
++V +L S++ + E F+ G + S +++ + +G+ + F P A A+ TM
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N V K KP+++ S P +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSL 93
>gi|383417507|gb|AFH31967.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|383417511|gb|AFH31969.1| polyadenylate-binding protein 1 [Macaca mulatta]
Length = 459
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 92/275 (33%), Positives = 155/275 (56%), Gaps = 13/275 (4%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S+DN+AL + F FG + +V ++N S+G+ + F T A++A +MN
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 159
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G L+ + V + + + +R +G K++ V++KN E +D+E LK F KFG
Sbjct: 160 GMLLNDRKVFVGRFKSR-KEREAELGARAKEFTN--VYIKNFGEDMDDERLKDLFGKFGP 216
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPG 211
+ VK++ DE+GKSKGFGF+ F ++ A+KA+ EMNG+ + +V A+
Sbjct: 217 ALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTEL 276
Query: 212 KKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIG 267
K+ F ++K + + ++V NL I++ + F+ FGTITS+ ++ + K G
Sbjct: 277 KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFG 336
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F+ F P+ AT AV+ MNG + +KPL V L+ K
Sbjct: 337 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 371
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 87/279 (31%), Positives = 134/279 (48%), Gaps = 37/279 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KPV I + + P R VG +F+KNL +++D + L
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVG---------NIFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+GF+ F + +AAE+AI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N ++++ ++LF +FG S +++
Sbjct: 178 EREAELGARAKEF-------------TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMT 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
D K GF+ F + A AV MNG K + V
Sbjct: 225 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>gi|338721952|ref|XP_003364452.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Equus
caballus]
Length = 631
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 101/308 (32%), Positives = 166/308 (53%), Gaps = 23/308 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK + W + D R + N + + NL+ S+DN+AL + F FG +
Sbjct: 78 KGKPIRIMWSQ---RDPSLRKSGVGN-------VFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V ++N S+G+A + F T A KA +MNG L+ + V + + + +R +G
Sbjct: 128 CKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK-EREAELGA 185
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
+ K++ V++KN E VD+E LK F +FG + VK++RD +GKSKGFGF+ + ++
Sbjct: 186 KAKEF--TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHED 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A KA+ EMNG+ I FV A+ K+ F ++K + + +++ NL
Sbjct: 244 ANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 239 NINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
I++ + + F+ FG+ITS+ ++ + K GF+ F P+ AT AV+ MNG + SKPL
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPL 363
Query: 295 KVTLSGTK 302
V L+ K
Sbjct: 364 YVALAQRK 371
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 128/269 (47%), Gaps = 37/269 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KP+ I + + P R VG VF+KNL +++D + L
Sbjct: 68 ALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+ F+ F + +AA+KAI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N +++ +ELF++FG S ++
Sbjct: 178 EREAELGAKAKEF-------------TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMR 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNG 286
D K GF+ + + A AV MNG
Sbjct: 225 DPSGKSKGFGFVSYEKHEDANKAVEEMNG 253
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITS----SSLVSDKHIGF--IEFIMPKHATHAVSTM 284
++V +L S++ + E F+ G + S +++ + +G+ + F P A A+ TM
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N V K KP+++ S P +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSL 93
>gi|193787802|dbj|BAG53005.1| unnamed protein product [Homo sapiens]
Length = 636
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 100/308 (32%), Positives = 165/308 (53%), Gaps = 23/308 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK + W + D R + N + + NL+ S+DN+AL + F FG +
Sbjct: 78 KGKPVRIMWSQ---RDPSLRKSGVGN-------IFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V ++N S+G+ + F T A++A +MNG L+ + V + + + +R +G
Sbjct: 128 CKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR-KEREAELGA 185
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
K++ V++KN E +D+E LK F KFG + VK++ DE+GKSKGFGF+ F ++
Sbjct: 186 RAKEFTN--VYIKNFGEDMDDERLKDLFGKFGAALSVKVMTDESGKSKGFGFVSFERHED 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A+KA+ EMNG+ + +V A+ K+ F ++K + + ++V NL
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 239 NINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
IN+ + F+ FGTITS+ ++ + K GF+ F P+ AT AV+ MNG + +KPL
Sbjct: 304 GINDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Query: 295 KVTLSGTK 302
V L+ K
Sbjct: 364 YVALAQRK 371
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 87/279 (31%), Positives = 134/279 (48%), Gaps = 37/279 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KPV I + + P R VG +F+KNL +++D + L
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVG---------NIFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+GF+ F + +AAE+AI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N ++++ ++LF +FG S +++
Sbjct: 178 EREAELGARAKEF-------------TNVYIKNFGEDMDDERLKDLFGKFGAALSVKVMT 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
D K GF+ F + A AV MNG K + V
Sbjct: 225 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>gi|281344898|gb|EFB20482.1| hypothetical protein PANDA_020836 [Ailuropoda melanoleuca]
Length = 674
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 94/273 (34%), Positives = 154/273 (56%), Gaps = 13/273 (4%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+DN+AL + F FG + +V ++N S+G+A + F T A KA +MNG
Sbjct: 116 IKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGM 174
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ + V + + + +R +G + K++ V++KN E VD+E LK F +FG +
Sbjct: 175 LLNDRKVFVGRFKSRK-EREAELGAKAKEFTN--VYIKNFGEEVDDESLKELFSQFGKTL 231
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKK 213
VK++RD +GKSKGFGF+ + ++ A KA+ EMNG+ I FV A+ K+
Sbjct: 232 SVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKR 291
Query: 214 VFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLV----SDKHIGFI 269
F ++K + + +++ NL I++ + + F+ FG+ITS+ ++ K GF+
Sbjct: 292 KFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFV 351
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F P+ AT AV+ MNG + SKPL V L+ K
Sbjct: 352 CFSSPEEATKAVTEMNGRIVGSKPLYVALAQRK 384
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L++ NL+ ++D++ L EF FG++ +V ++ S+GF + F++P EA KA
Sbjct: 304 YQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKA 362
Query: 92 RVEMNGHLIGSKPVIITFVELK 113
EMNG ++GSKP+ + + K
Sbjct: 363 VTEMNGRIVGSKPLYVALAQRK 384
>gi|350585908|ref|XP_003482078.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Sus scrofa]
Length = 660
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 94/273 (34%), Positives = 154/273 (56%), Gaps = 13/273 (4%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+DN+AL + F FG + +V ++N S+G+A + F T A KA +MNG
Sbjct: 103 IKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGM 161
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ + V + + + +R +G + K++ V++KN E VD+E LK F +FG +
Sbjct: 162 LLNDRKVFVGRFKSRK-EREAELGAKAKEFTN--VYIKNFGEEVDDENLKELFSQFGKTL 218
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKK 213
VK++RD +GKSKGFGF+ + ++ A KA+ EMNG+ I FV A+ K+
Sbjct: 219 SVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKR 278
Query: 214 VFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLV----SDKHIGFI 269
F ++K + + +++ NL I++ + + F+ FG+ITS+ ++ K GF+
Sbjct: 279 KFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFV 338
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F P+ AT AV+ MNG + SKPL V L+ K
Sbjct: 339 CFSSPEEATKAVTEMNGRIVGSKPLYVALAQRK 371
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 128/269 (47%), Gaps = 37/269 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KP+ I + + P R VG VF+KNL +++D + L
Sbjct: 68 ALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+ F+ F + +AA+KAI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N +++ +ELF++FG S ++
Sbjct: 178 EREAELGAKAKEF-------------TNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMR 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNG 286
D K GF+ + + A AV MNG
Sbjct: 225 DPSGKSKGFGFVSYEKHEDANKAVEEMNG 253
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L++ NL+ ++D++ L EF FG++ +V ++ S+GF + F++P EA KA
Sbjct: 291 YQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKA 349
Query: 92 RVEMNGHLIGSKPVIITFVELK 113
EMNG ++GSKP+ + + K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITS----SSLVSDKHIGF--IEFIMPKHATHAVSTM 284
++V +L S++ + E F+ G + S +++ + +G+ + F P A A+ TM
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N V K KP+++ S P +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSL 93
>gi|332248413|ref|XP_003273358.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Nomascus
leucogenys]
gi|355557859|gb|EHH14639.1| hypothetical protein EGK_00600 [Macaca mulatta]
gi|383411103|gb|AFH28765.1| polyadenylate-binding protein 4 isoform 1 [Macaca mulatta]
gi|384941238|gb|AFI34224.1| polyadenylate-binding protein 4 isoform 1 [Macaca mulatta]
Length = 660
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 94/273 (34%), Positives = 154/273 (56%), Gaps = 13/273 (4%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+DN+AL + F FG + +V ++N S+G+A + F T A KA +MNG
Sbjct: 103 IKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGM 161
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ + V + + + +R +G + K++ V++KN E VD+E LK F +FG +
Sbjct: 162 LLNDRKVFVGRFKSRK-EREAELGAKAKEFTN--VYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKK 213
VK++RD +GKSKGFGF+ + ++ A KA+ EMNG+ I FV A+ K+
Sbjct: 219 SVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKR 278
Query: 214 VFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLV----SDKHIGFI 269
F ++K + + +++ NL I++ + + F+ FG+ITS+ ++ K GF+
Sbjct: 279 KFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFV 338
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F P+ AT AV+ MNG + SKPL V L+ K
Sbjct: 339 CFSSPEEATKAVTEMNGRIVGSKPLYVALAQRK 371
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 128/269 (47%), Gaps = 37/269 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KP+ I + + P R VG VF+KNL +++D + L
Sbjct: 68 ALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+ F+ F + +AA+KAI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N +++ +ELF++FG S ++
Sbjct: 178 EREAELGAKAKEF-------------TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMR 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNG 286
D K GF+ + + A AV MNG
Sbjct: 225 DPSGKSKGFGFVSYEKHEDANKAVEEMNG 253
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L++ NL+ ++D++ L EF FG++ +V ++ S+GF + F++P EA KA
Sbjct: 291 YQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKA 349
Query: 92 RVEMNGHLIGSKPVIITFVELK 113
EMNG ++GSKP+ + + K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITS----SSLVSDKHIGF--IEFIMPKHATHAVSTM 284
++V +L S++ + E F+ G + S +++ + +G+ + F P A A+ TM
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N V K KP+++ S P +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSL 93
>gi|335291035|ref|XP_003127861.2| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Sus scrofa]
Length = 644
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 94/273 (34%), Positives = 155/273 (56%), Gaps = 13/273 (4%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+DN+AL + F FG + +V ++N S+G+A + F T A KA +MNG
Sbjct: 103 IKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGM 161
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ + V + + + +R +G + K++ V++KN E VD+E LK F +FG +
Sbjct: 162 LLNDRKVFVGRFKSRK-EREAELGAKAKEFTN--VYIKNFGEEVDDENLKELFSQFGKTL 218
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKK 213
VK++RD +GKSKGFGF+ + ++ A KA+ EMNG+ I FV A+ K+
Sbjct: 219 SVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKR 278
Query: 214 VFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGFI 269
F ++K + + +++ NL I++ + + F+ FG+ITS+ ++ + K GF+
Sbjct: 279 KFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFV 338
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F P+ AT AV+ MNG + SKPL V L+ K
Sbjct: 339 CFSSPEEATKAVTEMNGRIVGSKPLYVALAQRK 371
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 128/269 (47%), Gaps = 37/269 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KP+ I + + P R VG VF+KNL +++D + L
Sbjct: 68 ALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+ F+ F + +AA+KAI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N +++ +ELF++FG S ++
Sbjct: 178 EREAELGAKAKEF-------------TNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMR 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNG 286
D K GF+ + + A AV MNG
Sbjct: 225 DPSGKSKGFGFVSYEKHEDANKAVEEMNG 253
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L++ NL+ ++D++ L EF FG++ +V ++ S+GF + F++P EA KA
Sbjct: 291 YQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKA 349
Query: 92 RVEMNGHLIGSKPVIITFVELK 113
EMNG ++GSKP+ + + K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITS----SSLVSDKHIGF--IEFIMPKHATHAVSTM 284
++V +L S++ + E F+ G + S +++ + +G+ + F P A A+ TM
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N V K KP+++ S P +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSL 93
>gi|139948570|ref|NP_001077193.1| polyadenylate-binding protein 4 [Bos taurus]
gi|134024563|gb|AAI34510.1| PABPC4 protein [Bos taurus]
gi|296488909|tpg|DAA31022.1| TPA: poly A binding protein, cytoplasmic 4 [Bos taurus]
Length = 645
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 94/273 (34%), Positives = 155/273 (56%), Gaps = 13/273 (4%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+DN+AL + F FG + +V ++N S+G+A + F T A KA +MNG
Sbjct: 103 IKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGM 161
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ + V + + + +R +G + K++ V++KN E VD+E LK F +FG +
Sbjct: 162 LLNDRKVFVGRFKSRK-EREAELGAKAKEFTN--VYIKNFGEEVDDENLKELFSQFGKTL 218
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKK 213
VK++RD +GKSKGFGF+ + ++ A KA+ EMNG+ I FV A+ K+
Sbjct: 219 SVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRAQKKVERQAELKR 278
Query: 214 VFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGFI 269
F ++K + + +++ NL I++ + + F+ FG+ITS+ ++ + K GF+
Sbjct: 279 KFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFV 338
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F P+ AT AV+ MNG + SKPL V L+ K
Sbjct: 339 CFSSPEEATKAVTEMNGRIVGSKPLYVALAQRK 371
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 128/269 (47%), Gaps = 37/269 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KP+ I + + P R VG VF+KNL +++D + L
Sbjct: 68 ALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+ F+ F + +AA+KAI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N +++ +ELF++FG S ++
Sbjct: 178 EREAELGAKAKEF-------------TNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMR 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNG 286
D K GF+ + + A AV MNG
Sbjct: 225 DPSGKSKGFGFVSYEKHEDANKAVEEMNG 253
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L++ NL+ ++D++ L EF FG++ +V ++ S+GF + F++P EA KA
Sbjct: 291 YQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKA 349
Query: 92 RVEMNGHLIGSKPVIITFVELK 113
EMNG ++GSKP+ + + K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITS----SSLVSDKHIGF--IEFIMPKHATHAVSTM 284
++V +L S++ + E F+ G + S +++ + +G+ + F P A A+ TM
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N V K KP+++ S P +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSL 93
>gi|392346932|ref|XP_230831.6| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Rattus
norvegicus]
Length = 609
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 99/308 (32%), Positives = 166/308 (53%), Gaps = 23/308 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KG+ + W D G R + N + + NLE S+DN+AL + F FG++
Sbjct: 78 KGQPIRIMWSH---RDPGLRRSGMGN-------IFIKNLENSIDNKALYDTFSTFGSILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V N++ SRGF + F T A+KA MNG L+ + V + + + +R +G
Sbjct: 128 SKVVYNEHG-SRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSRQ-KREAELGA 185
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
+ ++VKNL +DE+ L+ F +FG VK++RD NG+S+GFGFI F ++
Sbjct: 186 RALGFTN--IYVKNLRVDMDEQGLQDLFSQFGKTQSVKVMRDSNGQSRGFGFINFEKHEE 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNK-----IFVANLPS 238
A+KA+ MNG+ + +V A+ ++ K + ++ R+N+ ++V NL
Sbjct: 244 AQKAVDHMNGKEVSGQLLYVGRAQKRAERQNELKRRFEQMKQERQNRYQGVNLYVKNLDD 303
Query: 239 NINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
+IN+ +E+F+ +G ITS+ ++++ K GF+ F P+ AT AV+ MNG + +KPL
Sbjct: 304 SINDDRLKEVFSTYGVITSAKVMTESSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPL 363
Query: 295 KVTLSGTK 302
V L+ K
Sbjct: 364 YVALAQRK 371
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 84/259 (32%), Positives = 130/259 (50%), Gaps = 23/259 (8%)
Query: 35 NELHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKKARV 93
+ L+V +L P V L F GT+ +RV R+ S G+A I F PA+A++A
Sbjct: 11 SSLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 94 EMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIK 153
MN +I +P+ I + PG R +G +F+KNL ++D + L F
Sbjct: 71 TMNFEMIKGQPIRIMWSHRDPGLRRSGMG---------NIFIKNLENSIDNKALYDTFST 121
Query: 154 FGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKK 213
FG+I+ K+V +E+G S+GFGF+ F +++AA+KAI MNG ++ FV K
Sbjct: 122 FGSILSSKVVYNEHG-SRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHF------K 174
Query: 214 VFPKVKPPLLQPARK-NKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIG 267
K + L A I+V NL +++ ++LF++FG S ++ D + G
Sbjct: 175 SRQKREAELGARALGFTNIYVKNLRVDMDEQGLQDLFSQFGKTQSVKVMRDSNGQSRGFG 234
Query: 268 FIEFIMPKHATHAVSTMNG 286
FI F + A AV MNG
Sbjct: 235 FINFEKHEEAQKAVDHMNG 253
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 6/83 (7%)
Query: 229 NKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGF--IEFIMPKHATHAVS 282
+ ++V +L ++ + E+F+ GTI S + D + +G+ I F P A A+
Sbjct: 11 SSLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 283 TMNGHVFKSKPLKVTLSGTKPGV 305
TMN + K +P+++ S PG+
Sbjct: 71 TMNFEMIKGQPIRIMWSHRDPGL 93
>gi|444706907|gb|ELW48224.1| Polyadenylate-binding protein 4 [Tupaia chinensis]
Length = 692
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 94/273 (34%), Positives = 154/273 (56%), Gaps = 13/273 (4%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+DN+AL + F FG + +V ++N S+G+A + F T A KA +MNG
Sbjct: 103 IKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGM 161
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ + V + + + +R +G + K++ V++KN E VD+E LK F +FG +
Sbjct: 162 LLNDRKVFVGRFKSRK-EREAELGAKAKEFTN--VYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKK 213
VK++RD GKSKGFGF+ + ++ A KA+ EMNG+ I FV A+ K+
Sbjct: 219 SVKVMRDPTGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKR 278
Query: 214 VFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGFI 269
F ++K + + +++ NL I++ + + F+ FG+ITS+ ++ + K GF+
Sbjct: 279 KFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFV 338
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F P+ AT AV+ MNG + SKPL V L+ K
Sbjct: 339 CFSSPEEATKAVTEMNGRIVGSKPLYVALAQRK 371
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 128/269 (47%), Gaps = 37/269 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KP+ I + + P R VG VF+KNL +++D + L
Sbjct: 68 ALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+ F+ F + +AA+KAI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N +++ +ELF++FG S ++
Sbjct: 178 EREAELGAKAKEF-------------TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMR 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNG 286
D K GF+ + + A AV MNG
Sbjct: 225 DPTGKSKGFGFVSYEKHEDANKAVEEMNG 253
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L++ NL+ ++D++ L EF FG++ +V ++ S+GF + F++P EA KA
Sbjct: 291 YQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKA 349
Query: 92 RVEMNGHLIGSKPVIITFVELK 113
EMNG ++GSKP+ + + K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
Score = 39.7 bits (91), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITS----SSLVSDKHIGF--IEFIMPKHATHAVSTM 284
++V +L S++ + E F+ G + S +++ + +G+ + F P A A+ TM
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N V K KP+++ S P +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSL 93
>gi|426215228|ref|XP_004001876.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Ovis aries]
Length = 644
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 94/273 (34%), Positives = 155/273 (56%), Gaps = 13/273 (4%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+DN+AL + F FG + +V ++N S+G+A + F T A KA +MNG
Sbjct: 103 IKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGM 161
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ + V + + + +R +G + K++ V++KN E VD+E LK F +FG +
Sbjct: 162 LLNDRKVFVGRFKSRK-EREAELGAKAKEFTN--VYIKNFGEEVDDENLKELFSQFGKTL 218
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKK 213
VK++RD +GKSKGFGF+ + ++ A KA+ EMNG+ I FV A+ K+
Sbjct: 219 SVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRAQKKVERQAELKR 278
Query: 214 VFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGFI 269
F ++K + + +++ NL I++ + + F+ FG+ITS+ ++ + K GF+
Sbjct: 279 KFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFV 338
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F P+ AT AV+ MNG + SKPL V L+ K
Sbjct: 339 CFSSPEEATKAVTEMNGRIVGSKPLYVALAQRK 371
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 128/269 (47%), Gaps = 37/269 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KP+ I + + P R VG VF+KNL +++D + L
Sbjct: 68 ALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+ F+ F + +AA+KAI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N +++ +ELF++FG S ++
Sbjct: 178 EREAELGAKAKEF-------------TNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMR 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNG 286
D K GF+ + + A AV MNG
Sbjct: 225 DPSGKSKGFGFVSYEKHEDANKAVEEMNG 253
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L++ NL+ ++D++ L EF FG++ +V ++ S+GF + F++P EA KA
Sbjct: 291 YQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKA 349
Query: 92 RVEMNGHLIGSKPVIITFVELK 113
EMNG ++GSKP+ + + K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITS----SSLVSDKHIGF--IEFIMPKHATHAVSTM 284
++V +L S++ + E F+ G + S +++ + +G+ + F P A A+ TM
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N V K KP+++ S P +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSL 93
>gi|426215226|ref|XP_004001875.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Ovis aries]
Length = 660
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 94/273 (34%), Positives = 154/273 (56%), Gaps = 13/273 (4%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+DN+AL + F FG + +V ++N S+G+A + F T A KA +MNG
Sbjct: 103 IKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGM 161
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ + V + + + +R +G + K++ V++KN E VD+E LK F +FG +
Sbjct: 162 LLNDRKVFVGRFKSRK-EREAELGAKAKEFTN--VYIKNFGEEVDDENLKELFSQFGKTL 218
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKK 213
VK++RD +GKSKGFGF+ + ++ A KA+ EMNG+ I FV A+ K+
Sbjct: 219 SVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRAQKKVERQAELKR 278
Query: 214 VFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLV----SDKHIGFI 269
F ++K + + +++ NL I++ + + F+ FG+ITS+ ++ K GF+
Sbjct: 279 KFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFV 338
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F P+ AT AV+ MNG + SKPL V L+ K
Sbjct: 339 CFSSPEEATKAVTEMNGRIVGSKPLYVALAQRK 371
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 128/269 (47%), Gaps = 37/269 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KP+ I + + P R VG VF+KNL +++D + L
Sbjct: 68 ALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+ F+ F + +AA+KAI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N +++ +ELF++FG S ++
Sbjct: 178 EREAELGAKAKEF-------------TNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMR 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNG 286
D K GF+ + + A AV MNG
Sbjct: 225 DPSGKSKGFGFVSYEKHEDANKAVEEMNG 253
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L++ NL+ ++D++ L EF FG++ +V ++ S+GF + F++P EA KA
Sbjct: 291 YQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKA 349
Query: 92 RVEMNGHLIGSKPVIITFVELK 113
EMNG ++GSKP+ + + K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITS----SSLVSDKHIGF--IEFIMPKHATHAVSTM 284
++V +L S++ + E F+ G + S +++ + +G+ + F P A A+ TM
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N V K KP+++ S P +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSL 93
>gi|332248417|ref|XP_003273360.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Nomascus
leucogenys]
gi|383411099|gb|AFH28763.1| polyadenylate-binding protein 4 isoform 3 [Macaca mulatta]
gi|384941234|gb|AFI34222.1| polyadenylate-binding protein 4 isoform 3 [Macaca mulatta]
Length = 631
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 101/308 (32%), Positives = 166/308 (53%), Gaps = 23/308 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK + W + D R + N + + NL+ S+DN+AL + F FG +
Sbjct: 78 KGKPIRIMWSQ---RDPSLRKSGVGN-------VFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V ++N S+G+A + F T A KA +MNG L+ + V + + + +R +G
Sbjct: 128 CKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK-EREAELGA 185
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
+ K++ V++KN E VD+E LK F +FG + VK++RD +GKSKGFGF+ + ++
Sbjct: 186 KAKEF--TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHED 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A KA+ EMNG+ I FV A+ K+ F ++K + + +++ NL
Sbjct: 244 ANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 239 NINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
I++ + + F+ FG+ITS+ ++ + K GF+ F P+ AT AV+ MNG + SKPL
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPL 363
Query: 295 KVTLSGTK 302
V L+ K
Sbjct: 364 YVALAQRK 371
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 128/269 (47%), Gaps = 37/269 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KP+ I + + P R VG VF+KNL +++D + L
Sbjct: 68 ALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+ F+ F + +AA+KAI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N +++ +ELF++FG S ++
Sbjct: 178 EREAELGAKAKEF-------------TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMR 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNG 286
D K GF+ + + A AV MNG
Sbjct: 225 DPSGKSKGFGFVSYEKHEDANKAVEEMNG 253
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITS----SSLVSDKHIGF--IEFIMPKHATHAVSTM 284
++V +L S++ + E F+ G + S +++ + +G+ + F P A A+ TM
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N V K KP+++ S P +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSL 93
>gi|693937|emb|CAA88401.1| polyadenylate binding protein II [Homo sapiens]
Length = 522
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 92/275 (33%), Positives = 155/275 (56%), Gaps = 13/275 (4%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S+DN+AL + F FG + +V ++N S+G+ + F T A++A +MN
Sbjct: 76 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 134
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G L+ + V + + + +R +G K++ V++KN E +D+E LK F KFG
Sbjct: 135 GMLLNDRKVFVGRFKSRK-EREAELGARAKEFTN--VYIKNFGEDMDDERLKDLFGKFGP 191
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPG 211
+ VK++ DE+GKSKGFGF+ F ++ A+KA+ EMNG+ + +V A+
Sbjct: 192 ALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTEL 251
Query: 212 KKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIG 267
K+ F ++K + + ++V NL I++ + F+ FGTITS+ ++ + K G
Sbjct: 252 KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFG 311
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F+ F P+ AT AV+ MNG + +KPL V L+ K
Sbjct: 312 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 346
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 81/260 (31%), Positives = 126/260 (48%), Gaps = 37/260 (14%)
Query: 51 LINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITF 109
L +F G + +RV R+ S G+A + F PA+A++A MN +I KPV I +
Sbjct: 2 LYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 61
Query: 110 VELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGK 169
+ P R VG +F+KNL +++D + L F FGNI+ K+V DENG
Sbjct: 62 SQRDPSLRKSGVG---------NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG- 111
Query: 170 SKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL--------AEIVPGKKVFPKVKPP 221
SKG+GF+ F + +AAE+AI +MNG ++ FV AE+ K F
Sbjct: 112 SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEF------ 165
Query: 222 LLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKH 276
+++ N ++++ ++LF +FG S +++D K GF+ F +
Sbjct: 166 -------TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 218
Query: 277 ATHAVSTMNGHVFKSKPLKV 296
A AV MNG K + V
Sbjct: 219 AQKAVDEMNGKELNGKQIYV 238
>gi|402854031|ref|XP_003891684.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Papio anubis]
Length = 631
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 101/308 (32%), Positives = 166/308 (53%), Gaps = 23/308 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK + W + D R + N + + NL+ S+DN+AL + F FG +
Sbjct: 78 KGKPIRIMWSQ---RDPSLRKSGVGN-------VFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V ++N S+G+A + F T A KA +MNG L+ + V + + + +R +G
Sbjct: 128 CKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK-EREAELGA 185
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
+ K++ V++KN E VD+E LK F +FG + VK++RD +GKSKGFGF+ + ++
Sbjct: 186 KAKEF--TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHED 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A KA+ EMNG+ I FV A+ K+ F ++K + + +++ NL
Sbjct: 244 ANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 239 NINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
I++ + + F+ FG+ITS+ ++ + K GF+ F P+ AT AV+ MNG + SKPL
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPL 363
Query: 295 KVTLSGTK 302
V L+ K
Sbjct: 364 YVALAQRK 371
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 128/269 (47%), Gaps = 37/269 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KP+ I + + P R VG VF+KNL +++D + L
Sbjct: 68 ALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+ F+ F + +AA+KAI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N +++ +ELF++FG S ++
Sbjct: 178 EREAELGAKAKEF-------------TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMR 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNG 286
D K GF+ + + A AV MNG
Sbjct: 225 DPSGKSKGFGFVSYEKHEDANKAVEEMNG 253
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITS----SSLVSDKHIGF--IEFIMPKHATHAVSTM 284
++V +L S++ + E F+ G + S +++ + +G+ + F P A A+ TM
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N V K KP+++ S P +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSL 93
>gi|41388837|gb|AAH65540.1| PABPC4 protein [Homo sapiens]
Length = 631
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 101/308 (32%), Positives = 164/308 (53%), Gaps = 23/308 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK + W + D R + N + + NL+ S+DN+ L + F FG +
Sbjct: 78 KGKPIRIMWSQ---RDPSLRKSGVGN-------VFIKNLDKSIDNKVLYDTFSAFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V ++N S+G+A + F T A KA +MNG L+ + V + + + +R +G
Sbjct: 128 CKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK-EREAELGA 185
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
+ K++ V++KN E VD+E LK F +FG + VK++RD NGKSKGFGF+ + ++
Sbjct: 186 KAKEF--TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHED 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A KA+ EMNG+ I FV A+ K+ F ++K + + +++ NL
Sbjct: 244 ANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 239 NINNSEFEELFARFGTITSSSLV----SDKHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
I++ + + F+ FG+ITS+ ++ K GF+ F P+ AT AV+ MNG + SKPL
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPL 363
Query: 295 KVTLSGTK 302
V L+ K
Sbjct: 364 YVALAQRK 371
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 128/269 (47%), Gaps = 37/269 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KP+ I + + P R VG VF+KNL +++D + L
Sbjct: 68 ALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKSIDNKVLYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+ F+ F + +AA+KAI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N +++ +ELF++FG S ++
Sbjct: 178 EREAELGAKAKEF-------------TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMR 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNG 286
D K GF+ + + A AV MNG
Sbjct: 225 DPNGKSKGFGFVSYEKHEDANKAVEEMNG 253
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITS----SSLVSDKHIGF--IEFIMPKHATHAVSTM 284
++V +L S++ + E F+ G + S +++ + +G+ + F P A A+ TM
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N V K KP+++ S P +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSL 93
>gi|426215230|ref|XP_004001877.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Ovis aries]
Length = 631
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 101/308 (32%), Positives = 165/308 (53%), Gaps = 23/308 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK + W + D R + N + + NL+ S+DN+AL + F FG +
Sbjct: 78 KGKPIRIMWSQ---RDPSLRKSGVGN-------VFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V ++N S+G+A + F T A KA +MNG L+ + V + + + +R +G
Sbjct: 128 CKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK-EREAELGA 185
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
+ K++ V++KN E VD+E LK F +FG + VK++RD +GKSKGFGF+ + ++
Sbjct: 186 KAKEF--TNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHED 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A KA+ EMNG+ I FV A+ K+ F ++K + + +++ NL
Sbjct: 244 ANKAVEEMNGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 239 NINNSEFEELFARFGTITSSSLV----SDKHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
I++ + + F+ FG+ITS+ ++ K GF+ F P+ AT AV+ MNG + SKPL
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPL 363
Query: 295 KVTLSGTK 302
V L+ K
Sbjct: 364 YVALAQRK 371
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 128/269 (47%), Gaps = 37/269 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KP+ I + + P R VG VF+KNL +++D + L
Sbjct: 68 ALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+ F+ F + +AA+KAI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N +++ +ELF++FG S ++
Sbjct: 178 EREAELGAKAKEF-------------TNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMR 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNG 286
D K GF+ + + A AV MNG
Sbjct: 225 DPSGKSKGFGFVSYEKHEDANKAVEEMNG 253
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITS----SSLVSDKHIGF--IEFIMPKHATHAVSTM 284
++V +L S++ + E F+ G + S +++ + +G+ + F P A A+ TM
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N V K KP+++ S P +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSL 93
>gi|348552996|ref|XP_003462313.1| PREDICTED: polyadenylate-binding protein 4-like isoform 2 [Cavia
porcellus]
Length = 644
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 94/273 (34%), Positives = 154/273 (56%), Gaps = 13/273 (4%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+DN+AL + F FG + +V ++N S+G+A + F T A KA +MNG
Sbjct: 103 IKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGM 161
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ + V + + + +R +G + K++ V++KN E VD+E LK F +FG +
Sbjct: 162 LLNDRKVFVGRFKSRK-EREAELGAKAKEFTN--VYIKNFGEEVDDENLKELFSQFGKTL 218
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKK 213
VK++RD +GKSKGFGF+ + ++ A KA+ EMNG+ I FV A+ K+
Sbjct: 219 SVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEINGKIIFVGRAQKKVERQAELKR 278
Query: 214 VFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLV----SDKHIGFI 269
F ++K + + +++ NL I++ + + F+ FG+ITS+ ++ K GF+
Sbjct: 279 KFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFV 338
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F P+ AT AV+ MNG + SKPL V L+ K
Sbjct: 339 CFSSPEEATKAVTEMNGRIVGSKPLYVALAQRK 371
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 128/269 (47%), Gaps = 37/269 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KP+ I + + P R VG VF+KNL +++D + L
Sbjct: 68 ALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+ F+ F + +AA+KAI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N +++ +ELF++FG S ++
Sbjct: 178 EREAELGAKAKEF-------------TNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMR 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNG 286
D K GF+ + + A AV MNG
Sbjct: 225 DPSGKSKGFGFVSYEKHEDANKAVEEMNG 253
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L++ NL+ ++D++ L EF FG++ +V ++ S+GF + F++P EA KA
Sbjct: 291 YQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKA 349
Query: 92 RVEMNGHLIGSKPVIITFVELK 113
EMNG ++GSKP+ + + K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITS----SSLVSDKHIGF--IEFIMPKHATHAVSTM 284
++V +L S++ + E F+ G + S +++ + +G+ + F P A A+ TM
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N V K KP+++ S P +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSL 93
>gi|348552994|ref|XP_003462312.1| PREDICTED: polyadenylate-binding protein 4-like isoform 1 [Cavia
porcellus]
Length = 660
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 94/273 (34%), Positives = 154/273 (56%), Gaps = 13/273 (4%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+DN+AL + F FG + +V ++N S+G+A + F T A KA +MNG
Sbjct: 103 IKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGM 161
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ + V + + + +R +G + K++ V++KN E VD+E LK F +FG +
Sbjct: 162 LLNDRKVFVGRFKSRK-EREAELGAKAKEFTN--VYIKNFGEEVDDENLKELFSQFGKTL 218
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKK 213
VK++RD +GKSKGFGF+ + ++ A KA+ EMNG+ I FV A+ K+
Sbjct: 219 SVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEINGKIIFVGRAQKKVERQAELKR 278
Query: 214 VFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLV----SDKHIGFI 269
F ++K + + +++ NL I++ + + F+ FG+ITS+ ++ K GF+
Sbjct: 279 KFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFV 338
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F P+ AT AV+ MNG + SKPL V L+ K
Sbjct: 339 CFSSPEEATKAVTEMNGRIVGSKPLYVALAQRK 371
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 128/269 (47%), Gaps = 37/269 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KP+ I + + P R VG VF+KNL +++D + L
Sbjct: 68 ALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+ F+ F + +AA+KAI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N +++ +ELF++FG S ++
Sbjct: 178 EREAELGAKAKEF-------------TNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMR 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNG 286
D K GF+ + + A AV MNG
Sbjct: 225 DPSGKSKGFGFVSYEKHEDANKAVEEMNG 253
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L++ NL+ ++D++ L EF FG++ +V ++ S+GF + F++P EA KA
Sbjct: 291 YQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKA 349
Query: 92 RVEMNGHLIGSKPVIITFVELK 113
EMNG ++GSKP+ + + K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITS----SSLVSDKHIGF--IEFIMPKHATHAVSTM 284
++V +L S++ + E F+ G + S +++ + +G+ + F P A A+ TM
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N V K KP+++ S P +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSL 93
>gi|348553000|ref|XP_003462315.1| PREDICTED: polyadenylate-binding protein 4-like isoform 4 [Cavia
porcellus]
Length = 631
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 101/308 (32%), Positives = 165/308 (53%), Gaps = 23/308 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK + W + D R + N + + NL+ S+DN+AL + F FG +
Sbjct: 78 KGKPIRIMWSQ---RDPSLRKSGVGN-------VFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V ++N S+G+A + F T A KA +MNG L+ + V + + + +R +G
Sbjct: 128 CKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK-EREAELGA 185
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
+ K++ V++KN E VD+E LK F +FG + VK++RD +GKSKGFGF+ + ++
Sbjct: 186 KAKEF--TNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHED 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A KA+ EMNG+ I FV A+ K+ F ++K + + +++ NL
Sbjct: 244 ANKAVEEMNGKEINGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 239 NINNSEFEELFARFGTITSSSLV----SDKHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
I++ + + F+ FG+ITS+ ++ K GF+ F P+ AT AV+ MNG + SKPL
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPL 363
Query: 295 KVTLSGTK 302
V L+ K
Sbjct: 364 YVALAQRK 371
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 128/269 (47%), Gaps = 37/269 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KP+ I + + P R VG VF+KNL +++D + L
Sbjct: 68 ALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+ F+ F + +AA+KAI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N +++ +ELF++FG S ++
Sbjct: 178 EREAELGAKAKEF-------------TNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMR 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNG 286
D K GF+ + + A AV MNG
Sbjct: 225 DPSGKSKGFGFVSYEKHEDANKAVEEMNG 253
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITS----SSLVSDKHIGF--IEFIMPKHATHAVSTM 284
++V +L S++ + E F+ G + S +++ + +G+ + F P A A+ TM
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N V K KP+++ S P +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSL 93
>gi|348552998|ref|XP_003462314.1| PREDICTED: polyadenylate-binding protein 4-like isoform 3 [Cavia
porcellus]
Length = 615
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 101/308 (32%), Positives = 166/308 (53%), Gaps = 23/308 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK + W + D R + N + + NL+ S+DN+AL + F FG +
Sbjct: 78 KGKPIRIMWSQ---RDPSLRKSGVGN-------VFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V ++N S+G+A + F T A KA +MNG L+ + V + + + +R +G
Sbjct: 128 CKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK-EREAELGA 185
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
+ K++ V++KN E VD+E LK F +FG + VK++RD +GKSKGFGF+ + ++
Sbjct: 186 KAKEFTN--VYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHED 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A KA+ EMNG+ I FV A+ K+ F ++K + + +++ NL
Sbjct: 244 ANKAVEEMNGKEINGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 239 NINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
I++ + + F+ FG+ITS+ ++ + K GF+ F P+ AT AV+ MNG + SKPL
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPL 363
Query: 295 KVTLSGTK 302
V L+ K
Sbjct: 364 YVALAQRK 371
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 128/269 (47%), Gaps = 37/269 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KP+ I + + P R VG VF+KNL +++D + L
Sbjct: 68 ALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+ F+ F + +AA+KAI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N +++ +ELF++FG S ++
Sbjct: 178 EREAELGAKAKEF-------------TNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMR 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNG 286
D K GF+ + + A AV MNG
Sbjct: 225 DPSGKSKGFGFVSYEKHEDANKAVEEMNG 253
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITS----SSLVSDKHIGF--IEFIMPKHATHAVSTM 284
++V +L S++ + E F+ G + S +++ + +G+ + F P A A+ TM
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N V K KP+++ S P +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSL 93
>gi|426360413|ref|XP_004047438.1| PREDICTED: polyadenylate-binding protein 1 [Gorilla gorilla
gorilla]
Length = 682
Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 92/275 (33%), Positives = 155/275 (56%), Gaps = 13/275 (4%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S+DN+AL + F FG + +V ++N S+G+ + F T A++A +MN
Sbjct: 147 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 205
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G L+ + V + + + +R +G K++ V++KN E +D+E LK F KFG
Sbjct: 206 GMLLNDRKVFVGRFKSR-KEREAELGARAKEFTN--VYIKNFGEDMDDERLKDLFGKFGP 262
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPG 211
+ VK++ DE+GKSKGFGF+ F ++ A+KA+ EMNG+ + +V A+
Sbjct: 263 ALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTEL 322
Query: 212 KKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIG 267
K+ F ++K + + ++V NL I++ + F+ FGTITS+ ++ + K G
Sbjct: 323 KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFG 382
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F+ F P+ AT AV+ MNG + +KPL V L+ K
Sbjct: 383 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 417
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 87/304 (28%), Positives = 138/304 (45%), Gaps = 68/304 (22%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S+DN+AL + F FG + +V ++N S+G+ + F T A++A +MN
Sbjct: 30 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 88
Query: 97 GHL-------------------------------IGSKPVIITFVELKPGQRSKPVGPEE 125
G L I KPV I + + P R VG
Sbjct: 89 GMLLNXXXXEASNIDSENVFPAAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVG--- 145
Query: 126 KQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAE 185
+F+KNL +++D + L F FGNI+ K+V DENG SKG+GF+ F + +AAE
Sbjct: 146 ------NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAE 198
Query: 186 KAIIEMNGRMIQHNSTFVSL--------AEIVPGKKVFPKVKPPLLQPARKNKIFVANLP 237
+AI +MNG ++ FV AE+ K F +++ N
Sbjct: 199 RAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEF-------------TNVYIKNFG 245
Query: 238 SNINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSK 292
++++ ++LF +FG S +++D K GF+ F + A AV MNG K
Sbjct: 246 EDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGK 305
Query: 293 PLKV 296
+ V
Sbjct: 306 QIYV 309
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 71/222 (31%), Positives = 108/222 (48%), Gaps = 34/222 (15%)
Query: 95 MNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKF 154
MN +I KPV I + + P R VG +F+KNL +++D + L F F
Sbjct: 1 MNFDVIKGKPVRIMWSQRDPSLRKSGVG---------NIFIKNLDKSIDNKALYDTFSAF 51
Query: 155 GNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVS---------L 205
GNI+ K+V DENG SKG+GF+ F + +AAE+AI +MNG ++ S
Sbjct: 52 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNXXXXEASNIDSENVFPA 110
Query: 206 AE---------IVPGK--KVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGT 254
AE ++ GK ++ + P L+ + IF+ NL +I+N + F+ FG
Sbjct: 111 AERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 170
Query: 255 ITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSK 292
I S +V D K GF+ F + A A+ MNG + +
Sbjct: 171 ILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 212
>gi|37681851|gb|AAQ97803.1| poly(A)-binding protein, cytoplasmic 1 [Danio rerio]
Length = 620
Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 93/308 (30%), Positives = 166/308 (53%), Gaps = 23/308 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KG+ + W + D G R + N + + N++ S+DN+AL + F FG +
Sbjct: 78 KGRPIRIMWSQ---RDPGLRKSGVGN-------IFIKNMDESIDNKALYDTFSAFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V ++N S+G+ + F T A +A MNG L+ + V + + + +R +G
Sbjct: 128 CKVVCDENG-SKGYGFVHFETQEAANRAIETMNGMLLNDRKVFVGHFKSRK-EREAEMGA 185
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
+ ++ V++KN E +D E+LK+ F +FG + V ++ DE G+S+GFGF+ F ++
Sbjct: 186 KAVEFTN--VYIKNFGEDIDSEKLKNIFTEFGKTLSVCVMTDERGRSRGFGFVNFVNHGD 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A +A+ EMNG+ + +V A+ K+ F ++K +Q + ++V NL
Sbjct: 244 ARRAVTEMNGKELNGRVLYVGRAQKRLERQGELKRKFEQIKQERIQRYQGVNLYVKNLDD 303
Query: 239 NINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
+I++ + + FA +GTITS+ +++D + GF+ F P+ AT AV+ MNG + +KPL
Sbjct: 304 SIDDEKLRKEFAPYGTITSAKVMTDGGHSRGFGFVCFSSPEEATKAVTEMNGRIVSTKPL 363
Query: 295 KVTLSGTK 302
V L+ K
Sbjct: 364 YVALAQRK 371
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 81/272 (29%), Positives = 130/272 (47%), Gaps = 21/272 (7%)
Query: 31 VYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAK 89
Y L+V +L V L +F G + +RV R+ S G+A I F PA+A+
Sbjct: 7 AYPLASLYVGDLHADVTEAMLYQKFSPAGQIMSIRVCRDVITRRSLGYAYINFQQPADAE 66
Query: 90 KARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKS 149
A MN +I +P+ I + + PG R VG +F+KN+ E++D + L
Sbjct: 67 CALDTMNYEVIKGRPIRIMWSQRDPGLRKSGVG---------NIFIKNMDESIDNKALYD 117
Query: 150 HFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIV 209
F FGNI+ K+V DENG SKG+GF+ F + +AA +AI MNG ++ FV +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAANRAIETMNGMLLNDRKVFVGHFKSR 176
Query: 210 PGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----K 264
++ K +++ N +I++ + + +F FG S +++D +
Sbjct: 177 KEREAEMGAK-----AVEFTNVYIKNFGEDIDSEKLKNIFTEFGKTLSVCVMTDERGRSR 231
Query: 265 HIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
GF+ F+ A AV+ MNG + L V
Sbjct: 232 GFGFVNFVNHGDARRAVTEMNGKELNGRVLYV 263
>gi|41054151|ref|NP_956133.1| polyadenylate-binding protein 1-like [Danio rerio]
gi|27881953|gb|AAH44513.1| Zgc:55855 [Danio rerio]
gi|182890236|gb|AAI65470.1| Zgc:55855 protein [Danio rerio]
Length = 620
Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 93/308 (30%), Positives = 166/308 (53%), Gaps = 23/308 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KG+ + W + D G R + N + + N++ S+DN+AL + F FG +
Sbjct: 78 KGRPIRIMWSQ---RDPGLRKSGVGN-------IFIKNMDESIDNKALYDTFSAFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V ++N S+G+ + F T A +A MNG L+ + V + + + +R +G
Sbjct: 128 CKVVCDENG-SKGYGFVHFETQEAANRAIETMNGMLLNDRKVFVGHFKSRK-EREAEMGA 185
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
+ ++ V++KN E +D E+LK+ F +FG + V ++ DE G+S+GFGF+ F ++
Sbjct: 186 KAVEFTN--VYIKNFGEDIDSEKLKNIFTEFGKTLSVCVMTDERGRSRGFGFVNFVNHGD 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A +A+ EMNG+ + +V A+ K+ F ++K +Q + ++V NL
Sbjct: 244 ARRAVTEMNGKELNGRVLYVGRAQKRLERQGELKRKFEQIKQERIQRYQGVNLYVKNLDD 303
Query: 239 NINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
+I++ + + FA +GTITS+ +++D + GF+ F P+ AT AV+ MNG + +KPL
Sbjct: 304 SIDDEKLRKEFAPYGTITSAKVMTDGGHSRGFGFVCFSSPEEATKAVTEMNGRIVSTKPL 363
Query: 295 KVTLSGTK 302
V L+ K
Sbjct: 364 YVALAQRK 371
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 81/272 (29%), Positives = 130/272 (47%), Gaps = 21/272 (7%)
Query: 31 VYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAK 89
Y L+V +L V L +F G + +RV R+ S G+A I F PA+A+
Sbjct: 7 AYPLASLYVGDLHADVTEAMLYQKFSPAGQIMSIRVCRDVITRRSLGYAYINFQQPADAE 66
Query: 90 KARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKS 149
A MN +I +P+ I + + PG R VG +F+KN+ E++D + L
Sbjct: 67 CALDTMNYEVIKGRPIRIMWSQRDPGLRKSGVG---------NIFIKNMDESIDNKALYD 117
Query: 150 HFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIV 209
F FGNI+ K+V DENG SKG+GF+ F + +AA +AI MNG ++ FV +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAANRAIETMNGMLLNDRKVFVGHFKSR 176
Query: 210 PGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----K 264
++ K +++ N +I++ + + +F FG S +++D +
Sbjct: 177 KEREAEMGAK-----AVEFTNVYIKNFGEDIDSEKLKNIFTEFGKTLSVCVMTDERGRSR 231
Query: 265 HIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
GF+ F+ A AV+ MNG + L V
Sbjct: 232 GFGFVNFVNHGDARRAVTEMNGKELNGRVLYV 263
>gi|348513239|ref|XP_003444150.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Oreochromis niloticus]
Length = 634
Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 88/275 (32%), Positives = 157/275 (57%), Gaps = 13/275 (4%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S+DN+AL + F FG + +V ++N S+G+ + F T A++A +MN
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 159
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G L+ + V + + + +R +G K++ V++KN + +D+E+L+ F K+GN
Sbjct: 160 GMLLNDRKVFVGRFKSR-KEREAELGARAKEFTN--VYIKNFGDEMDDEKLRELFSKYGN 216
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPG 211
+ ++++ DENGKS+GFGF+ F ++ A+KA+ EMNG+ + +V A+
Sbjct: 217 AMSIRVMTDENGKSRGFGFVSFERHEDAQKAVDEMNGKEMNGKLMYVGRAQKKVERQTEL 276
Query: 212 KKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIG 267
K+ F ++K + + ++V NL I++ + F+ FGTITS+ ++ + K G
Sbjct: 277 KRKFEQMKQDRMTRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFG 336
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F+ F P+ AT AV+ MNG + +KPL V L+ K
Sbjct: 337 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 371
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 84/279 (30%), Positives = 134/279 (48%), Gaps = 37/279 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I +PV I + + P R VG +F+KNL +++D + L
Sbjct: 68 ALDTMNFDVIKGQPVRIMWSQRDPSLRKSGVG---------NIFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+GF+ F + +AAE+AI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N +++ + ELF+++G S +++
Sbjct: 178 EREAELGARAKEF-------------TNVYIKNFGDEMDDEKLRELFSKYGNAMSIRVMT 224
Query: 263 DKH-----IGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
D++ GF+ F + A AV MNG K + V
Sbjct: 225 DENGKSRGFGFVSFERHEDAQKAVDEMNGKEMNGKLMYV 263
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L+V NL+ +D++ L EF FGT+ +V + S+GF + F++P EA KA
Sbjct: 291 YQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKA 349
Query: 92 RVEMNGHLIGSKPVIITFVELK 113
EMNG ++ +KP+ + + K
Sbjct: 350 VTEMNGRIVATKPLYVALAQRK 371
>gi|74189486|dbj|BAE22747.1| unnamed protein product [Mus musculus]
Length = 590
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 92/273 (33%), Positives = 153/273 (56%), Gaps = 13/273 (4%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+DN+AL + F FG + +V ++N S+G+A + F T A KA +MNG
Sbjct: 32 IKNLDESIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGM 90
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ + V + + + +R +G + K++ V++KN E VD+ LK F +FG +
Sbjct: 91 LLNDRKVFVGRFKSRK-EREAELGAKAKEF--TNVYIKNFGEEVDDGNLKELFSQFGKTL 147
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKK 213
VK++RD +GKSKGFGF+ + ++ A KA+ EMNG+ + + FV A+ K+
Sbjct: 148 SVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKR 207
Query: 214 VFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLV----SDKHIGFI 269
F ++K + + +++ NL I++ + F+ FG+ITS+ ++ K GF+
Sbjct: 208 KFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRREFSPFGSITSAKVMLEDGRSKGFGFV 267
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F P+ AT AV+ MNG + SKPL V L+ K
Sbjct: 268 CFSSPEEATKAVTEMNGRIVGSKPLYVALAQRK 300
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L++ NL+ ++D++ L EF FG++ +V ++ S+GF + F++P EA KA
Sbjct: 220 YQGVNLYIKNLDDTIDDEKLRREFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKA 278
Query: 92 RVEMNGHLIGSKPVIITFVELK 113
EMNG ++GSKP+ + + K
Sbjct: 279 VTEMNGRIVGSKPLYVALAQRK 300
>gi|410953832|ref|XP_003983574.1| PREDICTED: polyadenylate-binding protein 1-like [Felis catus]
Length = 616
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 97/311 (31%), Positives = 168/311 (54%), Gaps = 29/311 (9%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
+G+ + W + D G R + N + + NLE S+DN+AL + F FG +
Sbjct: 78 RGQPIRIMWSQ---RDPGLRKSGVGN-------IFIKNLEDSIDNKALYDTFSTFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V + N SRGF + F T A++A V MNG L+ + V + + + +R +G
Sbjct: 128 CKVVCD-NHGSRGFGFVHFETHEAAQQAIVTMNGMLLNDRKVFVGHFKSR-REREAELGA 185
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
++ ++VKNL VDE+ L+ F +FG ++ VK++RD++G S+GFGF+ F ++
Sbjct: 186 RAMEFTN--IYVKNLHVDVDEQGLQDLFSQFGKMLSVKVMRDDSGHSRGFGFVNFEKHEE 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLA--------EIVPGKKVFPKVKPPLLQPARKNKIFVAN 235
A+KA+ +MNG+ ++ +V A E+ K+ F ++K L + ++V N
Sbjct: 244 AQKAVTDMNGKEVRGRLLYVGRAQKRVERQNEL---KRRFEQMKQDRLTRYQGVNLYVKN 300
Query: 236 LPSNINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKS 291
L +I++ + F+ +G ITS+ ++++ K GF+ F P+ AT AV+ MNG + +
Sbjct: 301 LDDSIDDEKLRREFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGT 360
Query: 292 KPLKVTLSGTK 302
KPL V L+ K
Sbjct: 361 KPLYVALAQRK 371
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 85/279 (30%), Positives = 137/279 (49%), Gaps = 37/279 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F G + +RV R+ S G+A I F PA+A++
Sbjct: 8 YPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I +P+ I + + PG R VG +F+KNL +++D + L
Sbjct: 68 ALDTMNFEVIRGQPIRIMWSQRDPGLRKSGVG---------NIFIKNLEDSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V D +G S+GFGF+ F +++AA++AI+ MNG ++ FV
Sbjct: 119 FSTFGNILSCKVVCDNHG-SRGFGFVHFETHEAAQQAIVTMNGMLLNDRKVFVGHFKSRR 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ F I+V NL +++ ++LF++FG + S ++
Sbjct: 178 EREAELGARAMEF-------------TNIYVKNLHVDVDEQGLQDLFSQFGKMLSVKVMR 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
D + GF+ F + A AV+ MNG + + L V
Sbjct: 225 DDSGHSRGFGFVNFEKHEEAQKAVTDMNGKEVRGRLLYV 263
>gi|348513241|ref|XP_003444151.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2
[Oreochromis niloticus]
Length = 637
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 88/275 (32%), Positives = 157/275 (57%), Gaps = 13/275 (4%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S+DN+AL + F FG + +V ++N S+G+ + F T A++A +MN
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 159
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G L+ + V + + + +R +G K++ V++KN + +D+E+L+ F K+GN
Sbjct: 160 GMLLNDRKVFVGRFKSR-KEREAELGARAKEFTN--VYIKNFGDEMDDEKLRELFSKYGN 216
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPG 211
+ ++++ DENGKS+GFGF+ F ++ A+KA+ EMNG+ + +V A+
Sbjct: 217 AMSIRVMTDENGKSRGFGFVSFERHEDAQKAVDEMNGKEMNGKLMYVGRAQKKVERQTEL 276
Query: 212 KKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIG 267
K+ F ++K + + ++V NL I++ + F+ FGTITS+ ++ + K G
Sbjct: 277 KRKFEQMKQDRMTRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFG 336
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F+ F P+ AT AV+ MNG + +KPL V L+ K
Sbjct: 337 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 371
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 84/279 (30%), Positives = 134/279 (48%), Gaps = 37/279 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I +PV I + + P R VG +F+KNL +++D + L
Sbjct: 68 ALDTMNFDVIKGQPVRIMWSQRDPSLRKSGVG---------NIFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+GF+ F + +AAE+AI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N +++ + ELF+++G S +++
Sbjct: 178 EREAELGARAKEF-------------TNVYIKNFGDEMDDEKLRELFSKYGNAMSIRVMT 224
Query: 263 DKH-----IGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
D++ GF+ F + A AV MNG K + V
Sbjct: 225 DENGKSRGFGFVSFERHEDAQKAVDEMNGKEMNGKLMYV 263
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L+V NL+ +D++ L EF FGT+ +V + S+GF + F++P EA KA
Sbjct: 291 YQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKA 349
Query: 92 RVEMNGHLIGSKPVIITFVELK 113
EMNG ++ +KP+ + + K
Sbjct: 350 VTEMNGRIVATKPLYVALAQRK 371
>gi|73992493|ref|XP_534430.2| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Canis lupus
familiaris]
Length = 611
Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 97/308 (31%), Positives = 166/308 (53%), Gaps = 23/308 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KG+ + W + D G R + N + + NLE S+DN+AL + F FG +
Sbjct: 78 KGQPIRIMWSQ---RDPGLRKSGVGN-------IFIKNLEDSIDNKALYDTFSTFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V + + SRGF + F T A++A MNG L+ + V FV +R + V
Sbjct: 128 CKVVCDDHG-SRGFGFVHFETHEAAQQAITTMNGMLLNDRKV---FVGHFKSRREREVEL 183
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
+ + ++VKNL VDE+ L+ F +FG ++ VK++RD++G S+GFGF+ F ++
Sbjct: 184 GARAMEFTNIYVKNLHVDVDEQGLQDLFSRFGKMLSVKVMRDDSGHSRGFGFVNFQKHEE 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A+KA+++MNG+ + +V A+ K+ F ++K L + ++V NL
Sbjct: 244 AQKAVMDMNGKEVSGRLLYVGRAQKRVERQSELKRRFEQLKQDRLTRYQGVNLYVKNLDD 303
Query: 239 NINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
+I++ + + F+ +G ITS+ ++++ K GF+ F P+ AT AV+ MNG + +KPL
Sbjct: 304 SIDDEKLRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRILGTKPL 363
Query: 295 KVTLSGTK 302
V L+ K
Sbjct: 364 YVALAQRK 371
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 84/272 (30%), Positives = 134/272 (49%), Gaps = 33/272 (12%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L P V L +F G + +RV R+ S G+A I F PA+A++A M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N +I +P+ I + + PG R VG +F+KNL +++D + L F FG
Sbjct: 73 NFEVIKGQPIRIMWSQRDPGLRKSGVG---------NIFIKNLEDSIDNKALYDTFSTFG 123
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL------AEIV 209
NI+ K+V D++G S+GFGF+ F +++AA++AI MNG ++ FV E+
Sbjct: 124 NILSCKVVCDDHG-SRGFGFVHFETHEAAQQAITTMNGMLLNDRKVFVGHFKSRREREVE 182
Query: 210 PGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----K 264
G + I+V NL +++ ++LF+RFG + S ++ D +
Sbjct: 183 LGARAM-----------EFTNIYVKNLHVDVDEQGLQDLFSRFGKMLSVKVMRDDSGHSR 231
Query: 265 HIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
GF+ F + A AV MNG + L V
Sbjct: 232 GFGFVNFQKHEEAQKAVMDMNGKEVSGRLLYV 263
>gi|148698436|gb|EDL30383.1| mCG5546, isoform CRA_b [Mus musculus]
Length = 580
Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 92/273 (33%), Positives = 153/273 (56%), Gaps = 13/273 (4%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+DN+AL + F FG + +V ++N S+G+A + F T A KA +MNG
Sbjct: 120 IKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGM 178
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ + V + + + +R +G + K++ V++KN E VD+ LK F +FG +
Sbjct: 179 LLNDRKVFVGRFKSRK-EREAELGAKAKEFTN--VYIKNFGEEVDDGNLKELFSQFGKTL 235
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKK 213
VK++RD +GKSKGFGF+ + ++ A KA+ EMNG+ + + FV A+ K+
Sbjct: 236 SVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKR 295
Query: 214 VFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLV----SDKHIGFI 269
F ++K + + +++ NL I++ + F+ FG+ITS+ ++ K GF+
Sbjct: 296 KFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRREFSPFGSITSAKVMLEDGRSKGFGFV 355
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F P+ AT AV+ MNG + SKPL V L+ K
Sbjct: 356 CFSSPEEATKAVTEMNGRIVGSKPLYVALAQRK 388
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 84/279 (30%), Positives = 131/279 (46%), Gaps = 37/279 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 25 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 84
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN ++ KP+ I + + P R VG VF+KNL +++D + L
Sbjct: 85 ALDTMNFDVMKGKPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKSIDNKALYDT 135
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+ F+ F + +AA+KAI +MNG ++ FV
Sbjct: 136 FSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 194
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N +++ +ELF++FG S ++
Sbjct: 195 EREAELGAKAKEF-------------TNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMR 241
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
D K GF+ + + A AV MNG K + V
Sbjct: 242 DSSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFV 280
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L++ NL+ ++D++ L EF FG++ +V ++ S+GF + F++P EA KA
Sbjct: 308 YQGVNLYIKNLDDTIDDEKLRREFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKA 366
Query: 92 RVEMNGHLIGSKPVIITFVELK 113
EMNG ++GSKP+ + + K
Sbjct: 367 VTEMNGRIVGSKPLYVALAQRK 388
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITS----SSLVSDKHIGF--IEFIMPKHATHAVSTM 284
++V +L S++ + E F+ G + S +++ + +G+ + F P A A+ TM
Sbjct: 30 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 89
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N V K KP+++ S P +
Sbjct: 90 NFDVMKGKPIRIMWSQRDPSL 110
>gi|354485887|ref|XP_003505113.1| PREDICTED: polyadenylate-binding protein 4-like [Cricetulus
griseus]
Length = 685
Score = 150 bits (380), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 99/308 (32%), Positives = 167/308 (54%), Gaps = 23/308 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK + W + D R + N + + NL+ S+DN+AL + F FG +
Sbjct: 100 KGKPIRIMWSQ---RDPSLRKSGVGN-------VFIKNLDKSIDNKALYDTFSAFGNILS 149
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V ++N S+G+A + F T A KA +MNG L+ + V + + + +R +G
Sbjct: 150 CKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK-EREAELGA 207
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
+ K++ V++KN E VD++ LK F +FG + VK++RD +GKSKGFGF+ + ++
Sbjct: 208 KAKEFTN--VYIKNFGEEVDDDNLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHED 265
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A KA+ EMNG+ + + FV A+ K+ F ++K + + +++ NL
Sbjct: 266 ANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 325
Query: 239 NINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
I++ + + F+ FG+ITS+ ++ + K GF+ F P+ AT AV+ MNG + SKPL
Sbjct: 326 TIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPL 385
Query: 295 KVTLSGTK 302
V L+ K
Sbjct: 386 YVALAQRK 393
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 85/279 (30%), Positives = 131/279 (46%), Gaps = 37/279 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 30 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 89
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KP+ I + + P R VG VF+KNL +++D + L
Sbjct: 90 ALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKSIDNKALYDT 140
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+ F+ F + +AA+KAI +MNG ++ FV
Sbjct: 141 FSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 199
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N +++ +ELF++FG S ++
Sbjct: 200 EREAELGAKAKEF-------------TNVYIKNFGEEVDDDNLKELFSQFGKTLSVKVMR 246
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
D K GF+ + + A AV MNG K + V
Sbjct: 247 DPSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFV 285
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITS----SSLVSDKHIGF--IEFIMPKHATHAVSTM 284
++V +L S++ + E F+ G + S +++ + +G+ + F P A A+ TM
Sbjct: 35 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 94
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N V K KP+++ S P +
Sbjct: 95 NFDVIKGKPIRIMWSQRDPSL 115
>gi|348588301|ref|XP_003479905.1| PREDICTED: polyadenylate-binding protein 1-like [Cavia porcellus]
Length = 599
Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 99/308 (32%), Positives = 165/308 (53%), Gaps = 23/308 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK + W + D R + N + + NL+ S+DN+AL + F FG +
Sbjct: 41 KGKPVRIMWSQ---RDPSLRKSGVGN-------IFIKNLDKSIDNKALYDTFSAFGNILS 90
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V ++N S+G+ + F T A++A +MNG L+ + V + + + +R +G
Sbjct: 91 CKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR-KEREAELGA 148
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
K++ V++KN E +D+E LK F KFG + VK++ DE+GKSKGFGF+ F ++
Sbjct: 149 RAKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 206
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A+KA+ EMNG+ + +V A+ K+ F ++K + + ++V NL
Sbjct: 207 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 266
Query: 239 NINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
I++ + F+ FGTITS+ ++ + K GF+ F P+ AT AV+ MNG + +KPL
Sbjct: 267 GIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 326
Query: 295 KVTLSGTK 302
V L+ K
Sbjct: 327 YVALAQRK 334
>gi|432107630|gb|ELK32863.1| Polyadenylate-binding protein 1 [Myotis davidii]
Length = 565
Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 99/308 (32%), Positives = 165/308 (53%), Gaps = 23/308 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK + W + D R + N + + NL+ S+DN+AL + F FG +
Sbjct: 7 KGKPVRIMWSQ---RDPSLRKSGVGN-------IFIKNLDKSIDNKALYDTFSAFGNILS 56
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V ++N S+G+ + F T A++A +MNG L+ + V + + + +R +G
Sbjct: 57 CKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR-KEREAELGA 114
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
K++ V++KN E +D+E LK F KFG + VK++ DE+GKSKGFGF+ F ++
Sbjct: 115 RAKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 172
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A+KA+ EMNG+ + +V A+ K+ F ++K + + ++V NL
Sbjct: 173 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 232
Query: 239 NINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
I++ + F+ FGTITS+ ++ + K GF+ F P+ AT AV+ MNG + +KPL
Sbjct: 233 GIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 292
Query: 295 KVTLSGTK 302
V L+ K
Sbjct: 293 YVALAQRK 300
>gi|338728570|ref|XP_001492678.3| PREDICTED: polyadenylate-binding protein 1 [Equus caballus]
Length = 565
Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 99/308 (32%), Positives = 165/308 (53%), Gaps = 23/308 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK + W + D R + N + + NL+ S+DN+AL + F FG +
Sbjct: 7 KGKPVRIMWSQ---RDPSLRKSGVGN-------IFIKNLDKSIDNKALYDTFSAFGNILS 56
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V ++N S+G+ + F T A++A +MNG L+ + V + + + +R +G
Sbjct: 57 CKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR-KEREAELGA 114
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
K++ V++KN E +D+E LK F KFG + VK++ DE+GKSKGFGF+ F ++
Sbjct: 115 RAKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 172
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A+KA+ EMNG+ + +V A+ K+ F ++K + + ++V NL
Sbjct: 173 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 232
Query: 239 NINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
I++ + F+ FGTITS+ ++ + K GF+ F P+ AT AV+ MNG + +KPL
Sbjct: 233 GIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 292
Query: 295 KVTLSGTK 302
V L+ K
Sbjct: 293 YVALAQRK 300
>gi|224046575|ref|XP_002200268.1| PREDICTED: polyadenylate-binding protein 1 [Taeniopygia guttata]
Length = 637
Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 99/308 (32%), Positives = 165/308 (53%), Gaps = 23/308 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK + W + D R + N + + NL+ S+DN+AL + F FG +
Sbjct: 78 KGKPVRIMWSQ---RDPSLRKSGVGN-------IFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V ++N S+G+ + F T A++A +MNG L+ + V + + + +R +G
Sbjct: 128 CKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR-KEREAELGA 185
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
K++ V++KN E +D+E LK F KFG + VK++ DE+GKSKGFGF+ F ++
Sbjct: 186 RAKEFTN--VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A+KA+ EMNG+ + +V A+ K+ F ++K + + ++V NL
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 239 NINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
I++ + F+ FGTITS+ ++ + K GF+ F P+ AT AV+ MNG + +KPL
Sbjct: 304 GIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Query: 295 KVTLSGTK 302
V L+ K
Sbjct: 364 YVALAQRK 371
Score = 130 bits (327), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 88/279 (31%), Positives = 134/279 (48%), Gaps = 37/279 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KPV I + + P R VG +F+KNL +++D + L
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVG---------NIFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+GF+ F + +AAE+AI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N ++++ +ELF +FG S +++
Sbjct: 178 EREAELGARAKEF-------------TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMT 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
D K GF+ F + A AV MNG K + V
Sbjct: 225 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>gi|440913295|gb|ELR62762.1| Polyadenylate-binding protein 1, partial [Bos grunniens mutus]
Length = 572
Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 99/308 (32%), Positives = 165/308 (53%), Gaps = 23/308 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK + W + D R + N + + NL+ S+DN+AL + F FG +
Sbjct: 14 KGKPVRIMWSQ---RDPSLRKSGVGN-------IFIKNLDKSIDNKALYDTFSAFGNILS 63
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V ++N S+G+ + F T A++A +MNG L+ + V + + + +R +G
Sbjct: 64 CKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR-KEREAELGA 121
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
K++ V++KN E +D+E LK F KFG + VK++ DE+GKSKGFGF+ F ++
Sbjct: 122 RAKEFTN--VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 179
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A+KA+ EMNG+ + +V A+ K+ F ++K + + ++V NL
Sbjct: 180 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 239
Query: 239 NINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
I++ + F+ FGTITS+ ++ + K GF+ F P+ AT AV+ MNG + +KPL
Sbjct: 240 GIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 299
Query: 295 KVTLSGTK 302
V L+ K
Sbjct: 300 YVALAQRK 307
>gi|395512247|ref|XP_003760354.1| PREDICTED: polyadenylate-binding protein 1 [Sarcophilus harrisii]
Length = 654
Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 92/275 (33%), Positives = 155/275 (56%), Gaps = 13/275 (4%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S+DN+AL + F FG + +V ++N S+G+ + F T A++A +MN
Sbjct: 121 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 179
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G L+ + V + + + +R +G K++ V++KN E +D+E LK F KFG
Sbjct: 180 GMLLNDRKVFVGRFKSR-KEREAELGARAKEF--TNVYIKNFGEDMDDERLKELFGKFGP 236
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPG 211
+ VK++ DE+GKSKGFGF+ F ++ A+KA+ EMNG+ + +V A+
Sbjct: 237 ALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTEL 296
Query: 212 KKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIG 267
K+ F ++K + + ++V NL I++ + F+ FGTITS+ ++ + K G
Sbjct: 297 KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFG 356
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F+ F P+ AT AV+ MNG + +KPL V L+ K
Sbjct: 357 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 391
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 71/231 (30%), Positives = 109/231 (47%), Gaps = 36/231 (15%)
Query: 79 IIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNL 138
++ P K+A MN +I KPV I + + P R VG +F+KNL
Sbjct: 76 LMTLQQPINRKRALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVG---------NIFIKNL 126
Query: 139 VETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQH 198
+++D + L F FGNI+ K+V DENG SKG+GF+ F + +AAE+AI +MNG ++
Sbjct: 127 DKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLND 185
Query: 199 NSTFVSL--------AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFA 250
FV AE+ K F +++ N ++++ +ELF
Sbjct: 186 RKVFVGRFKSRKEREAELGARAKEF-------------TNVYIKNFGEDMDDERLKELFG 232
Query: 251 RFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
+FG S +++D K GF+ F + A AV MNG K + V
Sbjct: 233 KFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 283
>gi|426236179|ref|XP_004012050.1| PREDICTED: polyadenylate-binding protein 1 [Ovis aries]
Length = 577
Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 99/308 (32%), Positives = 165/308 (53%), Gaps = 23/308 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK + W + D R + N + + NL+ S+DN+AL + F FG +
Sbjct: 19 KGKPVRIMWSQ---RDPSLRKSGVGN-------IFIKNLDKSIDNKALYDTFSAFGNILS 68
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V ++N S+G+ + F T A++A +MNG L+ + V + + + +R +G
Sbjct: 69 CKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR-KEREAELGA 126
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
K++ V++KN E +D+E LK F KFG + VK++ DE+GKSKGFGF+ F ++
Sbjct: 127 RAKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 184
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A+KA+ EMNG+ + +V A+ K+ F ++K + + ++V NL
Sbjct: 185 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 244
Query: 239 NINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
I++ + F+ FGTITS+ ++ + K GF+ F P+ AT AV+ MNG + +KPL
Sbjct: 245 GIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 304
Query: 295 KVTLSGTK 302
V L+ K
Sbjct: 305 YVALAQRK 312
>gi|301756358|ref|XP_002914026.1| PREDICTED: polyadenylate-binding protein 1-like [Ailuropoda
melanoleuca]
Length = 636
Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 99/308 (32%), Positives = 165/308 (53%), Gaps = 23/308 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK + W + D R + N + + NL+ S+DN+AL + F FG +
Sbjct: 78 KGKPVRIMWSQ---RDPSLRKSGVGN-------IFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V ++N S+G+ + F T A++A +MNG L+ + V + + + +R +G
Sbjct: 128 CKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR-KEREAELGA 185
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
K++ V++KN E +D+E LK F KFG + VK++ DE+GKSKGFGF+ F ++
Sbjct: 186 RAKEFTN--VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A+KA+ EMNG+ + +V A+ K+ F ++K + + ++V NL
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 239 NINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
I++ + F+ FGTITS+ ++ + K GF+ F P+ AT AV+ MNG + +KPL
Sbjct: 304 GIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Query: 295 KVTLSGTK 302
V L+ K
Sbjct: 364 YVALAQRK 371
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 84/279 (30%), Positives = 134/279 (48%), Gaps = 37/279 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F G + +R+ R+K S G+A + + P ++++
Sbjct: 8 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPRDSER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KPV I + + P R VG +F+KNL +++D + L
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVG---------NIFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+GF+ F + +AAE+AI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N ++++ ++LF +FG S +++
Sbjct: 178 EREAELGARAKEF-------------TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMT 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
D K GF+ F + A AV MNG K + V
Sbjct: 225 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>gi|449284083|gb|EMC90664.1| Polyadenylate-binding protein 1, partial [Columba livia]
Length = 573
Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 99/308 (32%), Positives = 165/308 (53%), Gaps = 23/308 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK + W + D R + N + + NL+ S+DN+AL + F FG +
Sbjct: 14 KGKPVRIMWSQ---RDPSLRKSGVGN-------IFIKNLDKSIDNKALYDTFSAFGNILS 63
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V ++N S+G+ + F T A++A +MNG L+ + V + + + +R +G
Sbjct: 64 CKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR-KEREAELGA 121
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
K++ V++KN E +D+E LK F KFG + VK++ DE+GKSKGFGF+ F ++
Sbjct: 122 RAKEF--TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 179
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A+KA+ EMNG+ + +V A+ K+ F ++K + + ++V NL
Sbjct: 180 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 239
Query: 239 NINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
I++ + F+ FGTITS+ ++ + K GF+ F P+ AT AV+ MNG + +KPL
Sbjct: 240 GIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 299
Query: 295 KVTLSGTK 302
V L+ K
Sbjct: 300 YVALAQRK 307
>gi|410987610|ref|XP_004000091.1| PREDICTED: polyadenylate-binding protein 1 [Felis catus]
Length = 672
Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 99/308 (32%), Positives = 165/308 (53%), Gaps = 23/308 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK + W + D R + N + + NL+ S+DN+AL + F FG +
Sbjct: 114 KGKPVRIMWSQ---RDPSLRKSGVGN-------IFIKNLDKSIDNKALYDTFSAFGNILS 163
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V ++N S+G+ + F T A++A +MNG L+ + V + + + +R +G
Sbjct: 164 CKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR-KEREAELGA 221
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
K++ V++KN E +D+E LK F KFG + VK++ DE+GKSKGFGF+ F ++
Sbjct: 222 RAKEFTN--VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 279
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A+KA+ EMNG+ + +V A+ K+ F ++K + + ++V NL
Sbjct: 280 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 339
Query: 239 NINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
I++ + F+ FGTITS+ ++ + K GF+ F P+ AT AV+ MNG + +KPL
Sbjct: 340 GIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 399
Query: 295 KVTLSGTK 302
V L+ K
Sbjct: 400 YVALAQRK 407
>gi|71896197|ref|NP_001026768.1| polyadenylate-binding protein 1 [Gallus gallus]
gi|53130422|emb|CAG31540.1| hypothetical protein RCJMB04_7l20 [Gallus gallus]
Length = 637
Score = 150 bits (380), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 99/308 (32%), Positives = 165/308 (53%), Gaps = 23/308 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK + W + D R + N + + NL+ S+DN+AL + F FG +
Sbjct: 78 KGKPVRIMWSQ---RDPSLRKSGVGN-------IFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V ++N S+G+ + F T A++A +MNG L+ + V + + + +R +G
Sbjct: 128 CKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR-KEREAELGA 185
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
K++ V++KN E +D+E LK F KFG + VK++ DE+GKSKGFGF+ F ++
Sbjct: 186 RAKEFTN--VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A+KA+ EMNG+ + +V A+ K+ F ++K + + ++V NL
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKRVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 239 NINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
I++ + F+ FGTITS+ ++ + K GF+ F P+ AT AV+ MNG + +KPL
Sbjct: 304 GIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Query: 295 KVTLSGTK 302
V L+ K
Sbjct: 364 YVALAQRK 371
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 88/279 (31%), Positives = 134/279 (48%), Gaps = 37/279 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KPV I + + P R VG +F+KNL +++D + L
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVG---------NIFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+GF+ F + +AAE+AI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N ++++ +ELF +FG S +++
Sbjct: 178 EREAELGARAKEF-------------TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMT 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
D K GF+ F + A AV MNG K + V
Sbjct: 225 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>gi|432095458|gb|ELK26654.1| Polyadenylate-binding protein 4 [Myotis davidii]
Length = 657
Score = 150 bits (380), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 93/273 (34%), Positives = 153/273 (56%), Gaps = 13/273 (4%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+DN+AL + F FG + +V ++N S+G+A + F T A KA +MNG
Sbjct: 99 IKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGM 157
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ + V + + + +R +G + K++ V++KN E VD+E LK F +FG +
Sbjct: 158 LLNDRKVFVGRFKSRK-EREAELGAKAKEFTN--VYIKNFGEEVDDESLKELFSQFGKTL 214
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKK 213
VK++RD GKSKGFGF+ + ++ A KA+ EMNG+ I FV A+ K+
Sbjct: 215 SVKVMRDPTGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKR 274
Query: 214 VFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGFI 269
F ++K + + +++ NL I++ + + F+ FG+IT + ++ + K GF+
Sbjct: 275 KFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITRAEVMLEDGRSKGFGFV 334
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F P+ AT AV+ MNG + SKPL V L+ K
Sbjct: 335 CFSSPEEATKAVTEMNGRIVGSKPLYVALAQRK 367
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L++ NL+ ++D++ L EF FG++ V ++ S+GF + F++P EA KA
Sbjct: 287 YQGVNLYIKNLDDTIDDEKLRKEFSPFGSITRAEVML-EDGRSKGFGFVCFSSPEEATKA 345
Query: 92 RVEMNGHLIGSKPVIITFVELK 113
EMNG ++GSKP+ + + K
Sbjct: 346 VTEMNGRIVGSKPLYVALAQRK 367
>gi|431901758|gb|ELK08635.1| Polyadenylate-binding protein 1 [Pteropus alecto]
Length = 636
Score = 150 bits (380), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 99/308 (32%), Positives = 165/308 (53%), Gaps = 23/308 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK + W + D R + N + + NL+ S+DN+AL + F FG +
Sbjct: 78 KGKPVRIMWSQ---RDPSLRKSGVGN-------IFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V ++N S+G+ + F T A++A +MNG L+ + V + + + +R +G
Sbjct: 128 CKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR-KEREAELGA 185
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
K++ V++KN E +D+E LK F KFG + VK++ DE+GKSKGFGF+ F ++
Sbjct: 186 RAKEFTN--VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A+KA+ EMNG+ + +V A+ K+ F ++K + + ++V NL
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 239 NINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
I++ + F+ FGTITS+ ++ + K GF+ F P+ AT AV+ MNG + +KPL
Sbjct: 304 GIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Query: 295 KVTLSGTK 302
V L+ K
Sbjct: 364 YVALAQRK 371
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 87/279 (31%), Positives = 134/279 (48%), Gaps = 37/279 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KPV I + + P R VG +F+KNL +++D + L
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVG---------NIFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+GF+ F + +AAE+AI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N ++++ ++LF +FG S +++
Sbjct: 178 EREAELGARAKEF-------------TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMT 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
D K GF+ F + A AV MNG K + V
Sbjct: 225 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>gi|19705459|ref|NP_599180.1| polyadenylate-binding protein 1 [Rattus norvegicus]
gi|47605941|sp|Q9EPH8.1|PABP1_RAT RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|12188891|emb|CAC21554.1| poly(A) binding protein [Rattus norvegicus]
gi|52789215|gb|AAH83176.1| Poly(A) binding protein, cytoplasmic 1 [Rattus norvegicus]
gi|149066519|gb|EDM16392.1| rCG60104 [Rattus norvegicus]
Length = 636
Score = 150 bits (380), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 99/308 (32%), Positives = 165/308 (53%), Gaps = 23/308 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK + W + D R + N + + NL+ S+DN+AL + F FG +
Sbjct: 78 KGKPVRIMWSQ---RDPSLRKSGVGN-------IFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V ++N S+G+ + F T A++A +MNG L+ + V + + + +R +G
Sbjct: 128 CKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR-KEREAELGA 185
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
K++ V++KN E +D+E LK F KFG + VK++ DE+GKSKGFGF+ F ++
Sbjct: 186 RAKEFTN--VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A+KA+ EMNG+ + +V A+ K+ F ++K + + ++V NL
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 239 NINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
I++ + F+ FGTITS+ ++ + K GF+ F P+ AT AV+ MNG + +KPL
Sbjct: 304 GIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Query: 295 KVTLSGTK 302
V L+ K
Sbjct: 364 YVALAQRK 371
Score = 130 bits (327), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 88/279 (31%), Positives = 134/279 (48%), Gaps = 37/279 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KPV I + + P R VG +F+KNL +++D + L
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVG---------NIFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+GF+ F + +AAE+AI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N ++++ +ELF +FG S +++
Sbjct: 178 EREAELGARAKEF-------------TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMT 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
D K GF+ F + A AV MNG K + V
Sbjct: 225 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>gi|41386798|ref|NP_776993.1| polyadenylate-binding protein 1 [Bos taurus]
gi|46367787|ref|NP_002559.2| polyadenylate-binding protein 1 [Homo sapiens]
gi|383872540|ref|NP_001244826.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|73974130|ref|XP_856708.1| PREDICTED: polyadenylate-binding protein 1 isoform 6 [Canis lupus
familiaris]
gi|194036975|ref|XP_001927782.1| PREDICTED: polyadenylate-binding protein 1 [Sus scrofa]
gi|332213999|ref|XP_003256115.1| PREDICTED: polyadenylate-binding protein 1 [Nomascus leucogenys]
gi|344273312|ref|XP_003408467.1| PREDICTED: polyadenylate-binding protein 1-like [Loxodonta
africana]
gi|402878853|ref|XP_003903080.1| PREDICTED: polyadenylate-binding protein 1 [Papio anubis]
gi|3183544|sp|P11940.2|PABP1_HUMAN RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|47117093|sp|P61286.1|PABP1_BOVIN RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|1562511|gb|AAD08718.1| poly(A)-binding protein [Homo sapiens]
gi|8979741|emb|CAB96752.1| polyadenylate-binding protein 1 [Bos taurus]
gi|16358990|gb|AAH15958.1| PABPC1 protein [Homo sapiens]
gi|23270713|gb|AAH23520.1| Poly(A) binding protein, cytoplasmic 1 [Homo sapiens]
gi|74268035|gb|AAI02366.1| Poly(A) binding protein, cytoplasmic 1 [Bos taurus]
gi|119612221|gb|EAW91815.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_b [Homo
sapiens]
gi|119612223|gb|EAW91817.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_b [Homo
sapiens]
gi|123993665|gb|ABM84434.1| poly(A) binding protein, cytoplasmic 1 [synthetic construct]
gi|123999981|gb|ABM87499.1| poly(A) binding protein, cytoplasmic 1 [synthetic construct]
gi|168278070|dbj|BAG11013.1| polyadenylate-binding protein 1 [synthetic construct]
gi|296480464|tpg|DAA22579.1| TPA: polyadenylate-binding protein 1 [Bos taurus]
gi|380811722|gb|AFE77736.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|384940022|gb|AFI33616.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|384940024|gb|AFI33617.1| polyadenylate-binding protein 1 [Macaca mulatta]
Length = 636
Score = 150 bits (379), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 99/308 (32%), Positives = 165/308 (53%), Gaps = 23/308 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK + W + D R + N + + NL+ S+DN+AL + F FG +
Sbjct: 78 KGKPVRIMWSQ---RDPSLRKSGVGN-------IFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V ++N S+G+ + F T A++A +MNG L+ + V + + + +R +G
Sbjct: 128 CKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR-KEREAELGA 185
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
K++ V++KN E +D+E LK F KFG + VK++ DE+GKSKGFGF+ F ++
Sbjct: 186 RAKEFTN--VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A+KA+ EMNG+ + +V A+ K+ F ++K + + ++V NL
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 239 NINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
I++ + F+ FGTITS+ ++ + K GF+ F P+ AT AV+ MNG + +KPL
Sbjct: 304 GIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Query: 295 KVTLSGTK 302
V L+ K
Sbjct: 364 YVALAQRK 371
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 87/279 (31%), Positives = 134/279 (48%), Gaps = 37/279 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KPV I + + P R VG +F+KNL +++D + L
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVG---------NIFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+GF+ F + +AAE+AI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N ++++ ++LF +FG S +++
Sbjct: 178 EREAELGARAKEF-------------TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMT 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
D K GF+ F + A AV MNG K + V
Sbjct: 225 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>gi|387017716|gb|AFJ50976.1| Polyadenylate-binding protein 1-like [Crotalus adamanteus]
Length = 636
Score = 150 bits (379), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 99/308 (32%), Positives = 165/308 (53%), Gaps = 23/308 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK + W + D R + N + + NL+ S+DN+AL + F FG +
Sbjct: 78 KGKPVRIMWSQ---RDPSLRKSGVGN-------IFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V ++N S+G+ + F T A++A +MNG L+ + V + + + +R +G
Sbjct: 128 CKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR-KEREAELGA 185
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
K++ V++KN E +D+E LK F KFG + VK++ DE+GKSKGFGF+ F ++
Sbjct: 186 RAKEFTN--VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A+KA+ EMNG+ + +V A+ K+ F ++K + + ++V NL
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 239 NINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
I++ + F+ FGTITS+ ++ + K GF+ F P+ AT AV+ MNG + +KPL
Sbjct: 304 GIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Query: 295 KVTLSGTK 302
V L+ K
Sbjct: 364 YVALAQRK 371
Score = 130 bits (327), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 88/279 (31%), Positives = 134/279 (48%), Gaps = 37/279 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KPV I + + P R VG +F+KNL +++D + L
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVG---------NIFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+GF+ F + +AAE+AI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N ++++ +ELF +FG S +++
Sbjct: 178 EREAELGARAKEF-------------TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMT 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
D K GF+ F + A AV MNG K + V
Sbjct: 225 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>gi|207080212|ref|NP_001128842.1| polyadenylate-binding protein 1 [Pongo abelii]
gi|75070631|sp|Q5R8F7.1|PABP1_PONAB RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|55730462|emb|CAH91953.1| hypothetical protein [Pongo abelii]
Length = 636
Score = 150 bits (379), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 99/308 (32%), Positives = 165/308 (53%), Gaps = 23/308 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK + W + D R + N + + NL+ S+DN+AL + F FG +
Sbjct: 78 KGKPVRIMWSQ---RDPSLRKSGVGN-------IFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V ++N S+G+ + F T A++A +MNG L+ + V + + + +R +G
Sbjct: 128 CKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR-KEREAELGA 185
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
K++ V++KN E +D+E LK F KFG + VK++ DE+GKSKGFGF+ F ++
Sbjct: 186 RAKEFTN--VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A+KA+ EMNG+ + +V A+ K+ F ++K + + ++V NL
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 239 NINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
I++ + F+ FGTITS+ ++ + K GF+ F P+ AT AV+ MNG + +KPL
Sbjct: 304 GIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Query: 295 KVTLSGTK 302
V L+ K
Sbjct: 364 YVALAQRK 371
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 86/279 (30%), Positives = 133/279 (47%), Gaps = 37/279 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L P L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KPV I + + P R VG +F+KNL +++D + L
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVG---------NIFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+GF+ F + +AAE+AI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N ++++ ++LF +FG S +++
Sbjct: 178 EREAELGARAKEF-------------TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMT 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
D K GF+ F + A AV MNG K + V
Sbjct: 225 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>gi|291388359|ref|XP_002710763.1| PREDICTED: poly A binding protein, cytoplasmic 4 [Oryctolagus
cuniculus]
Length = 636
Score = 150 bits (379), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 99/308 (32%), Positives = 165/308 (53%), Gaps = 23/308 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK + W + D R + N + + NL+ S+DN+AL + F FG +
Sbjct: 78 KGKPVRIMWSQ---RDPSLRKSGVGN-------IFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V ++N S+G+ + F T A++A +MNG L+ + V + + + +R +G
Sbjct: 128 CKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR-KEREAELGA 185
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
K++ V++KN E +D+E LK F KFG + VK++ DE+GKSKGFGF+ F ++
Sbjct: 186 RAKEFTN--VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A+KA+ EMNG+ + +V A+ K+ F ++K + + ++V NL
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 239 NINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
I++ + F+ FGTITS+ ++ + K GF+ F P+ AT AV+ MNG + +KPL
Sbjct: 304 GIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Query: 295 KVTLSGTK 302
V L+ K
Sbjct: 364 YVALAQRK 371
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 87/279 (31%), Positives = 134/279 (48%), Gaps = 37/279 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KPV I + + P R VG +F+KNL +++D + L
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVG---------NIFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+GF+ F + +AAE+AI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N ++++ ++LF +FG S +++
Sbjct: 178 EREAELGARAKEF-------------TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMT 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
D K GF+ F + A AV MNG K + V
Sbjct: 225 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>gi|26354649|dbj|BAC40951.1| unnamed protein product [Mus musculus]
Length = 636
Score = 150 bits (379), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 99/308 (32%), Positives = 165/308 (53%), Gaps = 23/308 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK + W + D R + N + + NL+ S+DN+AL + F FG +
Sbjct: 78 KGKPVRIMWSQ---RDPSLRKSGVGN-------IFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V ++N S+G+ + F T A++A +MNG L+ + V + + + +R +G
Sbjct: 128 CKVVCDENG-SKGYGFVHFETQEAAERAIKKMNGMLLNDRKVFVGRFKSR-KEREAELGA 185
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
K++ V++KN E +D+E LK F KFG + VK++ DE+GKSKGFGF+ F ++
Sbjct: 186 RAKEFTN--VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A+KA+ EMNG+ + +V A+ K+ F ++K + + ++V NL
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 239 NINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
I++ + F+ FGTITS+ ++ + K GF+ F P+ AT AV+ MNG + +KPL
Sbjct: 304 GIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Query: 295 KVTLSGTK 302
V L+ K
Sbjct: 364 YVALAQRK 371
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 88/279 (31%), Positives = 134/279 (48%), Gaps = 37/279 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KPV I + + P R VG +F+KNL +++D + L
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVG---------NIFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+GF+ F + +AAE+AI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIKKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N ++++ +ELF +FG S +++
Sbjct: 178 EREAELGARAKEF-------------TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMT 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
D K GF+ F + A AV MNG K + V
Sbjct: 225 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>gi|7689377|gb|AAF67755.1|AF255335_1 poly(A)-binding protein [Spisula solidissima]
Length = 286
Score = 150 bits (379), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 88/272 (32%), Positives = 156/272 (57%), Gaps = 13/272 (4%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S+DN+AL + F FG + ++ +++ SRG+ + F T A+ A ++N
Sbjct: 17 VFIKNLDKSIDNKALYDTFSAFGNILSCKIVSDEHG-SRGYGFVHFETEEAARNAIEKVN 75
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G L+ K V + + +R + +G + K++ + V++KN E +D+E+LK F FG
Sbjct: 76 GMLLNGKKVFVGRF-MNRRERLEQMGDKMKKF--NNVYIKNFSEEIDDEKLKIWFETFGK 132
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFP 216
II K++ +GK +GFGF+ + +AAEKA+ EMN + + + +V A+ ++
Sbjct: 133 IISAKVMTGYDGKGRGFGFVSYEEPEAAEKAVTEMNNKTFEEKTLYVGRAQKRAERQAEL 192
Query: 217 KVKPPLLQPARKNK-----IFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIG 267
K K L+ R N+ ++V NL +I++ + + F+ FGTITS+ ++++ K G
Sbjct: 193 KDKFDRLKQERMNRYQGVNLYVKNLDDSIDDEKLRKEFSAFGTITSAKVMTEGGRSKGFG 252
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299
F+ F P+ AT AV+ MNG + +KPL V L+
Sbjct: 253 FVCFSSPEEATKAVTEMNGRIIVAKPLYVALA 284
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 104/193 (53%), Gaps = 10/193 (5%)
Query: 23 RSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVF 82
R + +K+ K N +++ N +D++ L F+ FG + +V + + RGF + +
Sbjct: 95 RLEQMGDKMKKFNNVYIKNFSEEIDDEKLKIWFETFGKIISAKVMTGYDGKGRGFGFVSY 154
Query: 83 NTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDK--------VF 134
P A+KA EMN K + + + K +R + + + K+++ ++
Sbjct: 155 EEPEAAEKAVTEMNNKTFEEKTLYVGRAQ-KRAERQAELKDKFDRLKQERMNRYQGVNLY 213
Query: 135 VKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGR 194
VKNL +++D+E+L+ F FG I K++ E G+SKGFGF+ F S + A KA+ EMNGR
Sbjct: 214 VKNLDDSIDDEKLRKEFSAFGTITSAKVM-TEGGRSKGFGFVCFSSPEEATKAVTEMNGR 272
Query: 195 MIQHNSTFVSLAE 207
+I +V+LA+
Sbjct: 273 IIVAKPLYVALAQ 285
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 1/93 (1%)
Query: 19 DEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFA 78
D+ R +E Y+ L+V NL+ S+D++ L EF FGT+ +V + S+GF
Sbjct: 194 DKFDRLKQERMNRYQGVNLYVKNLDDSIDDEKLRKEFSAFGTITSAKVM-TEGGRSKGFG 252
Query: 79 IIVFNTPAEAKKARVEMNGHLIGSKPVIITFVE 111
+ F++P EA KA EMNG +I +KP+ + +
Sbjct: 253 FVCFSSPEEATKAVTEMNGRIIVAKPLYVALAQ 285
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 4/82 (4%)
Query: 219 KPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKH----IGFIEFIMP 274
+ P L+ + +F+ NL +I+N + F+ FG I S +VSD+H GF+ F
Sbjct: 5 RDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKIVSDEHGSRGYGFVHFETE 64
Query: 275 KHATHAVSTMNGHVFKSKPLKV 296
+ A +A+ +NG + K + V
Sbjct: 65 EAARNAIEKVNGMLLNGKKVFV 86
>gi|296200520|ref|XP_002747628.1| PREDICTED: polyadenylate-binding protein 1-like [Callithrix
jacchus]
Length = 614
Score = 150 bits (379), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 97/311 (31%), Positives = 169/311 (54%), Gaps = 29/311 (9%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KG+ + W + D G R + N + + NLE S+DN+AL + F FG +
Sbjct: 78 KGQPIRIMWSQ---RDPGLRKSGVGN-------IFIKNLEDSIDNKALYDTFSTFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+VA +K+ SRGF + F T A++A MNG L+ + V + + + +R+ +G
Sbjct: 128 CKVACDKHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSR-RERAAELGA 185
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
++ ++VKNL VDE+ L+ F +FG ++ VK++RD +G+S+ FGF+ F ++
Sbjct: 186 RALEFTN--IYVKNLPADVDEQGLQDLFSQFGKMLSVKVMRDNSGRSRCFGFVNFEKHEE 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLA--------EIVPGKKVFPKVKPPLLQPARKNKIFVAN 235
A+KA++ MNG+ + + S A E+ K+ F ++K L + ++V N
Sbjct: 244 AQKAVVHMNGKEVSGRLLYASRAQKRVERQNEL---KRKFEQMKQDRLSRYQGVNLYVKN 300
Query: 236 LPSNINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKS 291
L +I++ + + F+ +G ITS+ ++++ K GF+ F P+ AT AV+ MNG + +
Sbjct: 301 LDDSIDDDKLRKEFSPYGVITSAKVMTEGSHSKGFGFVCFSSPEEATKAVTEMNGRIVGT 360
Query: 292 KPLKVTLSGTK 302
KPL V L+ K
Sbjct: 361 KPLYVALAQRK 371
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 82/269 (30%), Positives = 135/269 (50%), Gaps = 37/269 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F G++ +RV R+ S G+A I F PA+A++
Sbjct: 8 YPLASLYVGDLHPDVTEAMLYEKFSPAGSILSIRVCRDVATRRSLGYAYINFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN ++ +P+ I + + PG R VG +F+KNL +++D + L
Sbjct: 68 ALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVG---------NIFIKNLEDSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVS------ 204
F FGNI+ K+ D++G S+GFGF+ F +++AA++AI MNG ++ FV
Sbjct: 119 FSTFGNILSCKVACDKHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRR 177
Query: 205 --LAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ G + I+V NLP++++ ++LF++FG + S ++
Sbjct: 178 ERAAEL--GARAL-----------EFTNIYVKNLPADVDEQGLQDLFSQFGKMLSVKVMR 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNG 286
D + GF+ F + A AV MNG
Sbjct: 225 DNSGRSRCFGFVNFEKHEEAQKAVVHMNG 253
>gi|13096978|gb|AAH03283.1| Poly(A) binding protein, cytoplasmic 4 [Mus musculus]
Length = 660
Score = 150 bits (379), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 92/273 (33%), Positives = 154/273 (56%), Gaps = 13/273 (4%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+DN+AL + F FG + +V ++N S+G+A + F T A KA +MNG
Sbjct: 103 IKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGM 161
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ + V + + + +R +G + K++ V++KN E VD+ LK F +FG +
Sbjct: 162 LLNDRKVFVGRFKSRK-EREAELGAKAKEFTN--VYIKNFGEEVDDGNLKELFSQFGKTL 218
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKK 213
VK++RD +GKSKGFGF+ + ++ A KA+ EMNG+ + + FV A+ K+
Sbjct: 219 SVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKR 278
Query: 214 VFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLV----SDKHIGFI 269
F ++K + + +++ NL I++ + + F+ FG+ITS+ ++ K GF+
Sbjct: 279 KFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFV 338
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F P+ AT AV+ MNG + SKPL V L+ K
Sbjct: 339 CFSSPEEATKAVTEMNGRIVGSKPLYVALAQRK 371
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 84/279 (30%), Positives = 131/279 (46%), Gaps = 37/279 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN ++ KP+ I + + P R VG VF+KNL +++D + L
Sbjct: 68 ALDTMNFDVMKGKPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+ F+ F + +AA+KAI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N +++ +ELF++FG S ++
Sbjct: 178 EREAELGAKAKEF-------------TNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMR 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
D K GF+ + + A AV MNG K + V
Sbjct: 225 DSSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFV 263
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L++ NL+ ++D++ L EF FG++ +V ++ S+GF + F++P EA KA
Sbjct: 291 YQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKA 349
Query: 92 RVEMNGHLIGSKPVIITFVELK 113
EMNG ++GSKP+ + + K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITS----SSLVSDKHIGF--IEFIMPKHATHAVSTM 284
++V +L S++ + E F+ G + S +++ + +G+ + F P A A+ TM
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N V K KP+++ S P +
Sbjct: 73 NFDVMKGKPIRIMWSQRDPSL 93
>gi|327283838|ref|XP_003226647.1| PREDICTED: polyadenylate-binding protein 1-like [Anolis
carolinensis]
Length = 636
Score = 150 bits (379), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 99/308 (32%), Positives = 165/308 (53%), Gaps = 23/308 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK + W + D R + N + + NL+ S+DN+AL + F FG +
Sbjct: 78 KGKPVRIMWSQ---RDPSLRKSGVGN-------IFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V ++N S+G+ + F T A++A +MNG L+ + V + + + +R +G
Sbjct: 128 CKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR-KEREAELGA 185
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
K++ V++KN E +D+E LK F KFG + VK++ DE+GKSKGFGF+ F ++
Sbjct: 186 RAKEFTN--VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A+KA+ EMNG+ + +V A+ K+ F ++K + + ++V NL
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 239 NINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
I++ + F+ FGTITS+ ++ + K GF+ F P+ AT AV+ MNG + +KPL
Sbjct: 304 GIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Query: 295 KVTLSGTK 302
V L+ K
Sbjct: 364 YVALAQRK 371
Score = 130 bits (327), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 88/279 (31%), Positives = 134/279 (48%), Gaps = 37/279 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KPV I + + P R VG +F+KNL +++D + L
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVG---------NIFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+GF+ F + +AAE+AI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N ++++ +ELF +FG S +++
Sbjct: 178 EREAELGARAKEF-------------TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMT 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
D K GF+ F + A AV MNG K + V
Sbjct: 225 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>gi|31560656|ref|NP_032800.2| polyadenylate-binding protein 1 [Mus musculus]
gi|341941223|sp|P29341.2|PABP1_MOUSE RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|13278026|gb|AAH03870.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|15029950|gb|AAH11207.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|18606321|gb|AAH23145.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|26336853|dbj|BAC32110.1| unnamed protein product [Mus musculus]
gi|29145018|gb|AAH46233.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|74144576|dbj|BAE36120.1| unnamed protein product [Mus musculus]
gi|74145579|dbj|BAE36203.1| unnamed protein product [Mus musculus]
gi|74179929|dbj|BAE36522.1| unnamed protein product [Mus musculus]
gi|74198265|dbj|BAE35302.1| unnamed protein product [Mus musculus]
gi|74198320|dbj|BAE35327.1| unnamed protein product [Mus musculus]
gi|74214225|dbj|BAE40360.1| unnamed protein product [Mus musculus]
gi|74223327|dbj|BAE21553.1| unnamed protein product [Mus musculus]
gi|148676871|gb|EDL08818.1| poly A binding protein, cytoplasmic 1 [Mus musculus]
Length = 636
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 99/308 (32%), Positives = 165/308 (53%), Gaps = 23/308 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK + W + D R + N + + NL+ S+DN+AL + F FG +
Sbjct: 78 KGKPVRIMWSQ---RDPSLRKSGVGN-------IFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V ++N S+G+ + F T A++A +MNG L+ + V + + + +R +G
Sbjct: 128 CKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR-KEREAELGA 185
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
K++ V++KN E +D+E LK F KFG + VK++ DE+GKSKGFGF+ F ++
Sbjct: 186 RAKEFTN--VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A+KA+ EMNG+ + +V A+ K+ F ++K + + ++V NL
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 239 NINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
I++ + F+ FGTITS+ ++ + K GF+ F P+ AT AV+ MNG + +KPL
Sbjct: 304 GIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Query: 295 KVTLSGTK 302
V L+ K
Sbjct: 364 YVALAQRK 371
Score = 130 bits (327), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 88/279 (31%), Positives = 134/279 (48%), Gaps = 37/279 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KPV I + + P R VG +F+KNL +++D + L
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVG---------NIFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+GF+ F + +AAE+AI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N ++++ +ELF +FG S +++
Sbjct: 178 EREAELGARAKEF-------------TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMT 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
D K GF+ F + A AV MNG K + V
Sbjct: 225 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>gi|149637721|ref|XP_001509272.1| PREDICTED: polyadenylate-binding protein 1-like [Ornithorhynchus
anatinus]
Length = 636
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 99/308 (32%), Positives = 165/308 (53%), Gaps = 23/308 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK + W + D R + N + + NL+ S+DN+AL + F FG +
Sbjct: 78 KGKPVRIMWSQ---RDPSLRKSGVGN-------IFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V ++N S+G+ + F T A++A +MNG L+ + V + + + +R +G
Sbjct: 128 CKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR-KEREAELGA 185
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
K++ V++KN E +D+E LK F KFG + VK++ DE+GKSKGFGF+ F ++
Sbjct: 186 RAKEFTN--VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A+KA+ EMNG+ + +V A+ K+ F ++K + + ++V NL
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 239 NINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
I++ + F+ FGTITS+ ++ + K GF+ F P+ AT AV+ MNG + +KPL
Sbjct: 304 GIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Query: 295 KVTLSGTK 302
V L+ K
Sbjct: 364 YVALAQRK 371
Score = 130 bits (327), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 88/279 (31%), Positives = 134/279 (48%), Gaps = 37/279 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KPV I + + P R VG +F+KNL +++D + L
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVG---------NIFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+GF+ F + +AAE+AI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N ++++ +ELF +FG S +++
Sbjct: 178 EREAELGARAKEF-------------TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMT 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
D K GF+ F + A AV MNG K + V
Sbjct: 225 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>gi|22507391|ref|NP_683717.1| polyadenylate-binding protein 4 isoform 2 [Mus musculus]
gi|16307591|gb|AAH10345.1| Poly(A) binding protein, cytoplasmic 4 [Mus musculus]
Length = 615
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 92/273 (33%), Positives = 153/273 (56%), Gaps = 13/273 (4%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+DN+AL + F FG + +V ++N S+G+A + F T A KA +MNG
Sbjct: 103 IKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGM 161
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ + V + + + +R +G + K++ V++KN E VD+ LK F +FG +
Sbjct: 162 LLNDRKVFVGRFKSRK-EREAELGAKAKEFTN--VYIKNFGEEVDDGNLKELFSQFGKTL 218
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKK 213
VK++RD +GKSKGFGF+ + ++ A KA+ EMNG+ + + FV A+ K+
Sbjct: 219 SVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKR 278
Query: 214 VFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLV----SDKHIGFI 269
F ++K + + +++ NL I++ + F+ FG+ITS+ ++ K GF+
Sbjct: 279 KFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRREFSPFGSITSAKVMLEDGRSKGFGFV 338
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F P+ AT AV+ MNG + SKPL V L+ K
Sbjct: 339 CFSSPEEATKAVTEMNGRIVGSKPLYVALAQRK 371
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 84/279 (30%), Positives = 131/279 (46%), Gaps = 37/279 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN ++ KP+ I + + P R VG VF+KNL +++D + L
Sbjct: 68 ALDTMNFDVMKGKPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+ F+ F + +AA+KAI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N +++ +ELF++FG S ++
Sbjct: 178 EREAELGAKAKEF-------------TNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMR 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
D K GF+ + + A AV MNG K + V
Sbjct: 225 DSSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFV 263
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L++ NL+ ++D++ L EF FG++ +V ++ S+GF + F++P EA KA
Sbjct: 291 YQGVNLYIKNLDDTIDDEKLRREFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKA 349
Query: 92 RVEMNGHLIGSKPVIITFVELK 113
EMNG ++GSKP+ + + K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITS----SSLVSDKHIGF--IEFIMPKHATHAVSTM 284
++V +L S++ + E F+ G + S +++ + +G+ + F P A A+ TM
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N V K KP+++ S P +
Sbjct: 73 NFDVMKGKPIRIMWSQRDPSL 93
>gi|34419622|ref|NP_570951.2| polyadenylate-binding protein 4 isoform 1 [Mus musculus]
gi|33991671|gb|AAH56432.1| Poly(A) binding protein, cytoplasmic 4 [Mus musculus]
gi|148698437|gb|EDL30384.1| mCG5546, isoform CRA_c [Mus musculus]
Length = 660
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 92/273 (33%), Positives = 153/273 (56%), Gaps = 13/273 (4%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+DN+AL + F FG + +V ++N S+G+A + F T A KA +MNG
Sbjct: 103 IKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGM 161
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ + V + + + +R +G + K++ V++KN E VD+ LK F +FG +
Sbjct: 162 LLNDRKVFVGRFKSRK-EREAELGAKAKEFTN--VYIKNFGEEVDDGNLKELFSQFGKTL 218
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKK 213
VK++RD +GKSKGFGF+ + ++ A KA+ EMNG+ + + FV A+ K+
Sbjct: 219 SVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKR 278
Query: 214 VFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLV----SDKHIGFI 269
F ++K + + +++ NL I++ + F+ FG+ITS+ ++ K GF+
Sbjct: 279 KFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRREFSPFGSITSAKVMLEDGRSKGFGFV 338
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F P+ AT AV+ MNG + SKPL V L+ K
Sbjct: 339 CFSSPEEATKAVTEMNGRIVGSKPLYVALAQRK 371
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 84/279 (30%), Positives = 131/279 (46%), Gaps = 37/279 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN ++ KP+ I + + P R VG VF+KNL +++D + L
Sbjct: 68 ALDTMNFDVMKGKPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+ F+ F + +AA+KAI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N +++ +ELF++FG S ++
Sbjct: 178 EREAELGAKAKEF-------------TNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMR 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
D K GF+ + + A AV MNG K + V
Sbjct: 225 DSSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFV 263
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L++ NL+ ++D++ L EF FG++ +V ++ S+GF + F++P EA KA
Sbjct: 291 YQGVNLYIKNLDDTIDDEKLRREFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKA 349
Query: 92 RVEMNGHLIGSKPVIITFVELK 113
EMNG ++GSKP+ + + K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITS----SSLVSDKHIGF--IEFIMPKHATHAVSTM 284
++V +L S++ + E F+ G + S +++ + +G+ + F P A A+ TM
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N V K KP+++ S P +
Sbjct: 73 NFDVMKGKPIRIMWSQRDPSL 93
>gi|148698435|gb|EDL30382.1| mCG5546, isoform CRA_a [Mus musculus]
Length = 632
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 92/273 (33%), Positives = 154/273 (56%), Gaps = 13/273 (4%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+DN+AL + F FG + +V ++N S+G+A + F T A KA +MNG
Sbjct: 120 IKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGM 178
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ + V + + + +R +G + K++ V++KN E VD+ LK F +FG +
Sbjct: 179 LLNDRKVFVGRFKSRK-EREAELGAKAKEFTN--VYIKNFGEEVDDGNLKELFSQFGKTL 235
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKK 213
VK++RD +GKSKGFGF+ + ++ A KA+ EMNG+ + + FV A+ K+
Sbjct: 236 SVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKR 295
Query: 214 VFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGFI 269
F ++K + + +++ NL I++ + F+ FG+ITS+ ++ + K GF+
Sbjct: 296 KFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRREFSPFGSITSAKVMLEDGRSKGFGFV 355
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F P+ AT AV+ MNG + SKPL V L+ K
Sbjct: 356 CFSSPEEATKAVTEMNGRIVGSKPLYVALAQRK 388
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 84/279 (30%), Positives = 131/279 (46%), Gaps = 37/279 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 25 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 84
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN ++ KP+ I + + P R VG VF+KNL +++D + L
Sbjct: 85 ALDTMNFDVMKGKPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKSIDNKALYDT 135
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+ F+ F + +AA+KAI +MNG ++ FV
Sbjct: 136 FSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 194
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N +++ +ELF++FG S ++
Sbjct: 195 EREAELGAKAKEF-------------TNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMR 241
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
D K GF+ + + A AV MNG K + V
Sbjct: 242 DSSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFV 280
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L++ NL+ ++D++ L EF FG++ +V ++ S+GF + F++P EA KA
Sbjct: 308 YQGVNLYIKNLDDTIDDEKLRREFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKA 366
Query: 92 RVEMNGHLIGSKPVIITFVELK 113
EMNG ++GSKP+ + + K
Sbjct: 367 VTEMNGRIVGSKPLYVALAQRK 388
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITS----SSLVSDKHIGF--IEFIMPKHATHAVSTM 284
++V +L S++ + E F+ G + S +++ + +G+ + F P A A+ TM
Sbjct: 30 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 89
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N V K KP+++ S P +
Sbjct: 90 NFDVMKGKPIRIMWSQRDPSL 110
>gi|326917956|ref|XP_003205259.1| PREDICTED: polyadenylate-binding protein 1-like [Meleagris
gallopavo]
Length = 652
Score = 150 bits (379), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 99/308 (32%), Positives = 165/308 (53%), Gaps = 23/308 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK + W + D R + N + + NL+ S+DN+AL + F FG +
Sbjct: 93 KGKPVRIMWSQ---RDPSLRKSGVGN-------IFIKNLDKSIDNKALYDTFSAFGNILS 142
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V ++N S+G+ + F T A++A +MNG L+ + V + + + +R +G
Sbjct: 143 CKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR-KEREAELGA 200
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
K++ V++KN E +D+E LK F KFG + VK++ DE+GKSKGFGF+ F ++
Sbjct: 201 RAKEF--TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 258
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A+KA+ EMNG+ + +V A+ K+ F ++K + + ++V NL
Sbjct: 259 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 318
Query: 239 NINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
I++ + F+ FGTITS+ ++ + K GF+ F P+ AT AV+ MNG + +KPL
Sbjct: 319 GIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 378
Query: 295 KVTLSGTK 302
V L+ K
Sbjct: 379 YVALAQRK 386
>gi|291408596|ref|XP_002720594.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2
[Oryctolagus cuniculus]
Length = 614
Score = 150 bits (379), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 92/275 (33%), Positives = 155/275 (56%), Gaps = 13/275 (4%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S+DN+AL + F FG + +V ++N S+G+ + F T A++A +MN
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 159
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G L+ + V + + + +R +G K++ V++KN E +D+E LK F KFG
Sbjct: 160 GMLLNDRKVFVGRFKSR-KEREAELGARAKEFTN--VYIKNFGEDMDDERLKDLFGKFGP 216
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPG 211
+ VK++ DE+GKSKGFGF+ F ++ A+KA+ EMNG+ + +V A+
Sbjct: 217 ALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTEL 276
Query: 212 KKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIG 267
K+ F ++K + + ++V NL I++ + F+ FGTITS+ ++ + K G
Sbjct: 277 KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFG 336
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F+ F P+ AT AV+ MNG + +KPL V L+ K
Sbjct: 337 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 371
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 86/279 (30%), Positives = 133/279 (47%), Gaps = 37/279 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KPV I + + P VG +F+KNL +++D + L
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLHKSGVG---------NIFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+GF+ F + +AAE+AI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N ++++ ++LF +FG S +++
Sbjct: 178 EREAELGARAKEF-------------TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMT 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
D K GF+ F + A AV MNG K + V
Sbjct: 225 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L+V NL+ +D++ L EF FGT+ +V + S+GF + F++P EA KA
Sbjct: 291 YQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKA 349
Query: 92 RVEMNGHLIGSKPVIITFVELK 113
EMNG ++ +KP+ + + K
Sbjct: 350 VTEMNGRIVATKPLYVALAQRK 371
>gi|281350417|gb|EFB26001.1| hypothetical protein PANDA_001865 [Ailuropoda melanoleuca]
Length = 640
Score = 150 bits (378), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 92/275 (33%), Positives = 155/275 (56%), Gaps = 13/275 (4%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S+DN+AL + F FG + +V ++N S+G+ + F T A++A +MN
Sbjct: 105 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 163
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G L+ + V + + + +R +G K++ V++KN E +D+E LK F KFG
Sbjct: 164 GMLLNDRKVFVGRFKSR-KEREAELGARAKEFTN--VYIKNFGEDMDDERLKDLFGKFGP 220
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPG 211
+ VK++ DE+GKSKGFGF+ F ++ A+KA+ EMNG+ + +V A+
Sbjct: 221 ALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTEL 280
Query: 212 KKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIG 267
K+ F ++K + + ++V NL I++ + F+ FGTITS+ ++ + K G
Sbjct: 281 KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFG 340
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F+ F P+ AT AV+ MNG + +KPL V L+ K
Sbjct: 341 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 375
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 84/279 (30%), Positives = 134/279 (48%), Gaps = 33/279 (11%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F G + +R+ R+K S G+A + + P +AK+
Sbjct: 8 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKR 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A +N +I +PV I + + P R VG +F+KNL +++D + L
Sbjct: 68 ALETLNFDVIKGRPVRIMWSQRDPSLRKSGVG-----GGVGNIFIKNLDKSIDNKALYDT 122
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+GF+ F + +AAE+AI +MNG ++ FV
Sbjct: 123 FSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 181
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N ++++ ++LF +FG S +++
Sbjct: 182 EREAELGARAKEF-------------TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMT 228
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
D K GF+ F + A AV MNG K + V
Sbjct: 229 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 267
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L+V NL+ +D++ L EF FGT+ +V + S+GF + F++P EA KA
Sbjct: 295 YQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKA 353
Query: 92 RVEMNGHLIGSKPVIITFVELK 113
EMNG ++ +KP+ + + K
Sbjct: 354 VTEMNGRIVATKPLYVALAQRK 375
>gi|74212334|dbj|BAE30919.1| unnamed protein product [Mus musculus]
Length = 636
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 99/308 (32%), Positives = 164/308 (53%), Gaps = 23/308 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK + W + D R + N + + NL+ S+DN+AL + F FG +
Sbjct: 78 KGKPVRIMWSQ---RDPSLRKSGVGN-------IFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V ++N S+G+ + F T A++A +MNG L+ + V + + + +R +G
Sbjct: 128 CKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR-KEREAELGA 185
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
K++ V++KN E +D+E LK F KFG + VK++ DE GKSKGFGF+ F ++
Sbjct: 186 RAKEFTN--VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDEGGKSKGFGFVSFERHED 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A+KA+ EMNG+ + +V A+ K+ F ++K + + ++V NL
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 239 NINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
I++ + F+ FGTITS+ ++ + K GF+ F P+ AT AV+ MNG + +KPL
Sbjct: 304 GIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Query: 295 KVTLSGTK 302
V L+ K
Sbjct: 364 YVALAQRK 371
Score = 130 bits (327), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 88/279 (31%), Positives = 134/279 (48%), Gaps = 37/279 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KPV I + + P R VG +F+KNL +++D + L
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVG---------NIFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+GF+ F + +AAE+AI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N ++++ +ELF +FG S +++
Sbjct: 178 EREAELGARAKEF-------------TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMT 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
D K GF+ F + A AV MNG K + V
Sbjct: 225 DEGGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>gi|53754|emb|CAA46522.1| poly(A) binding protein [Mus musculus]
Length = 636
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 101/309 (32%), Positives = 165/309 (53%), Gaps = 25/309 (8%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK + W + D R + N + + NL+ S+DN+AL + F FG +
Sbjct: 78 KGKPVRIMWSQ---RDPSLRKSGVGN-------IFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVII-TFVELKPGQRSKPVG 122
+V ++N S+G+ + F T A++A +MNG L+ + V + F K +R +G
Sbjct: 128 CKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSQK--EREAELG 184
Query: 123 PEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYK 182
K++ V++KN E +D+E LK F KFG + VK++ DE+GKSKGFGF+ F ++
Sbjct: 185 ARAKEFTN--VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 183 AAEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLP 237
A+KA+ EMNG+ + +V A+ K+ F ++K + + ++V NL
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLD 302
Query: 238 SNINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKP 293
I++ + F+ FGTITS+ ++ + K GF+ F P+ AT AV+ MNG + +KP
Sbjct: 303 DGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 362
Query: 294 LKVTLSGTK 302
L V L+ K
Sbjct: 363 LYVALAQRK 371
Score = 130 bits (327), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 88/279 (31%), Positives = 134/279 (48%), Gaps = 37/279 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KPV I + + P R VG +F+KNL +++D + L
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVG---------NIFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+GF+ F + +AAE+AI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSQK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N ++++ +ELF +FG S +++
Sbjct: 178 EREAELGARAKEF-------------TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMT 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
D K GF+ F + A AV MNG K + V
Sbjct: 225 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>gi|291408594|ref|XP_002720593.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Oryctolagus cuniculus]
Length = 636
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 92/275 (33%), Positives = 155/275 (56%), Gaps = 13/275 (4%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S+DN+AL + F FG + +V ++N S+G+ + F T A++A +MN
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 159
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G L+ + V + + + +R +G K++ V++KN E +D+E LK F KFG
Sbjct: 160 GMLLNDRKVFVGRFKSR-KEREAELGARAKEFTN--VYIKNFGEDMDDERLKDLFGKFGP 216
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPG 211
+ VK++ DE+GKSKGFGF+ F ++ A+KA+ EMNG+ + +V A+
Sbjct: 217 ALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTEL 276
Query: 212 KKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIG 267
K+ F ++K + + ++V NL I++ + F+ FGTITS+ ++ + K G
Sbjct: 277 KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFG 336
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F+ F P+ AT AV+ MNG + +KPL V L+ K
Sbjct: 337 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 371
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 86/279 (30%), Positives = 133/279 (47%), Gaps = 37/279 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KPV I + + P VG +F+KNL +++D + L
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLHKSGVG---------NIFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+GF+ F + +AAE+AI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N ++++ ++LF +FG S +++
Sbjct: 178 EREAELGARAKEF-------------TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMT 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
D K GF+ F + A AV MNG K + V
Sbjct: 225 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L+V NL+ +D++ L EF FGT+ +V + S+GF + F++P EA KA
Sbjct: 291 YQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKA 349
Query: 92 RVEMNGHLIGSKPVIITFVELK 113
EMNG ++ +KP+ + + K
Sbjct: 350 VTEMNGRIVATKPLYVALAQRK 371
>gi|194672643|ref|XP_882298.3| PREDICTED: poly(A) binding protein, cytoplasmic 1-like isoform 19
[Bos taurus]
gi|297482024|ref|XP_002692514.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Bos taurus]
gi|296480945|tpg|DAA23060.1| TPA: polyadenylate-binding protein 1-like [Bos taurus]
Length = 613
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 99/311 (31%), Positives = 166/311 (53%), Gaps = 29/311 (9%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KG+ + W + D G R + N + + NLE S+DN+AL + F FG +
Sbjct: 78 KGQPIRIMWSQ---RDPGLRKSGVGN-------IFIKNLEDSIDNKALYDTFSTFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V +++ SRGF + F T A+ A MNG L+ + V FV +R + V
Sbjct: 128 CKVVCDEHG-SRGFGFVHFETHEAAQNAISTMNGMLLNDRKV---FVGHFKSRREREVEL 183
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
+ + ++VKNL VDE+ L+ F +FG ++ VK++RD++G S+GFGF+ F ++
Sbjct: 184 GARAMEFTNIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDDSGHSRGFGFVNFEKHEE 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLA--------EIVPGKKVFPKVKPPLLQPARKNKIFVAN 235
A+KA++ MNGR + +V A E+ K+ F ++K L + ++V N
Sbjct: 244 AQKAVVNMNGREVSGRLLYVGRAQKRVERQNEL---KRRFEQMKQDRLTRYQGVNLYVKN 300
Query: 236 LPSNINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKS 291
L +I++ + + F+ +G ITS+ ++++ K GF+ F P+ AT AV+ MNG + +
Sbjct: 301 LDDSIDDEKLRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGT 360
Query: 292 KPLKVTLSGTK 302
KPL V L+ K
Sbjct: 361 KPLYVALAQRK 371
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 85/277 (30%), Positives = 134/277 (48%), Gaps = 33/277 (11%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F G + +RV R+ S G+A I F PA+A++
Sbjct: 8 YPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I +P+ I + + PG R VG +F+KNL +++D + L
Sbjct: 68 ALDTMNFEVIKGQPIRIMWSQRDPGLRKSGVG---------NIFIKNLEDSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DE+G S+GFGF+ F +++AA+ AI MNG ++ FV
Sbjct: 119 FSTFGNILSCKVVCDEHG-SRGFGFVHFETHEAAQNAISTMNGMLLNDRKVFVGHFKSRR 177
Query: 206 -AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD- 263
E+ G + I+V NL +++ ++LF++FG + S ++ D
Sbjct: 178 EREVELGARAM-----------EFTNIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDD 226
Query: 264 ----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
+ GF+ F + A AV MNG + L V
Sbjct: 227 SGHSRGFGFVNFEKHEEAQKAVVNMNGREVSGRLLYV 263
>gi|397502367|ref|XP_003821832.1| PREDICTED: polyadenylate-binding protein 1 [Pan paniscus]
Length = 656
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 99/308 (32%), Positives = 165/308 (53%), Gaps = 23/308 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK + W + D R + N + + NL+ S+DN+AL + F FG +
Sbjct: 98 KGKPVRIMWSQ---RDPSLRKSGVGN-------IFIKNLDKSIDNKALYDTFSAFGNILS 147
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V ++N S+G+ + F T A++A +MNG L+ + V + + + +R +G
Sbjct: 148 CKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR-KEREAELGA 205
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
K++ V++KN E +D+E LK F KFG + VK++ DE+GKSKGFGF+ F ++
Sbjct: 206 RAKEFTN--VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 263
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A+KA+ EMNG+ + +V A+ K+ F ++K + + ++V NL
Sbjct: 264 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 323
Query: 239 NINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
I++ + F+ FGTITS+ ++ + K GF+ F P+ AT AV+ MNG + +KPL
Sbjct: 324 GIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 383
Query: 295 KVTLSGTK 302
V L+ K
Sbjct: 384 YVALAQRK 391
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 87/299 (29%), Positives = 133/299 (44%), Gaps = 57/299 (19%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-------KNDESRGFAIIVFNT 84
Y L+V +L P V L +F G + +RV R+ + S ++
Sbjct: 8 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDXXXXXXXRWRRSHHPELLPAPQ 67
Query: 85 PAE-----AKK-ARVE--------MNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKK 130
P E A+K RVE MN +I KPV I + + P R VG
Sbjct: 68 PGEEVQFCARKIPRVEPSERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVG-------- 119
Query: 131 DKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIE 190
+F+KNL +++D + L F FGNI+ K+V DENG SKG+GF+ F + +AAE+AI +
Sbjct: 120 -NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEK 177
Query: 191 MNGRMIQHNSTFVSL--------AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINN 242
MNG ++ FV AE+ K F +++ N ++++
Sbjct: 178 MNGMLLNDRKVFVGRFKSRKEREAELGARAKEF-------------TNVYIKNFGEDMDD 224
Query: 243 SEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
++LF +FG S +++D K GF+ F + A AV MNG K + V
Sbjct: 225 ERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 283
>gi|426242065|ref|XP_004014898.1| PREDICTED: polyadenylate-binding protein 1-like [Ovis aries]
Length = 611
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 99/311 (31%), Positives = 166/311 (53%), Gaps = 29/311 (9%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KG+ + W + D G R + N + + NLE S+DN+AL + F FG +
Sbjct: 78 KGQPIRIMWSQ---RDPGLRKSGVGN-------IFIKNLEDSIDNKALYDTFSTFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V +++ SRGF + F T A+ A MNG L+ + V FV +R + V
Sbjct: 128 CKVVCDEHG-SRGFGFVHFETHEAAQNAISTMNGMLLNDRKV---FVGHFKSRREREVEL 183
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
+ + ++VKNL VDE+ L+ F +FG ++ VK++RD++G S+GFGF+ F ++
Sbjct: 184 GARAMEFTNIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDDSGHSRGFGFVNFEKHEE 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLA--------EIVPGKKVFPKVKPPLLQPARKNKIFVAN 235
A+KA++ MNGR + +V A E+ K+ F ++K L + ++V N
Sbjct: 244 AQKAVVNMNGREVSGRLLYVGRAQKRVERQNEL---KRRFEQMKQDRLTRYQGVNLYVKN 300
Query: 236 LPSNINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKS 291
L +I++ + + F+ +G ITS+ ++++ K GF+ F P+ AT AV+ MNG + +
Sbjct: 301 LDDSIDDEKLRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGT 360
Query: 292 KPLKVTLSGTK 302
KPL V L+ K
Sbjct: 361 KPLYVALAQRK 371
Score = 127 bits (318), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 85/277 (30%), Positives = 134/277 (48%), Gaps = 33/277 (11%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F G + +RV R+ S G+A I F PA+A++
Sbjct: 8 YPLASLYVGDLPPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I +P+ I + + PG R VG +F+KNL +++D + L
Sbjct: 68 ALDTMNFEVIKGQPIRIMWSQRDPGLRKSGVG---------NIFIKNLEDSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DE+G S+GFGF+ F +++AA+ AI MNG ++ FV
Sbjct: 119 FSTFGNILSCKVVCDEHG-SRGFGFVHFETHEAAQNAISTMNGMLLNDRKVFVGHFKSRR 177
Query: 206 -AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD- 263
E+ G + I+V NL +++ ++LF++FG + S ++ D
Sbjct: 178 EREVELGARAM-----------EFTNIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDD 226
Query: 264 ----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
+ GF+ F + A AV MNG + L V
Sbjct: 227 SGHSRGFGFVNFEKHEEAQKAVVNMNGREVSGRLLYV 263
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGF--IEFIMPKHATHAVSTM 284
++V +LP ++ + E F+ G I S + D + +G+ I F P A A+ TM
Sbjct: 13 LYVGDLPPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N V K +P+++ S PG+
Sbjct: 73 NFEVIKGQPIRIMWSQRDPGL 93
>gi|444706057|gb|ELW47419.1| Polyadenylate-binding protein 1 [Tupaia chinensis]
Length = 636
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 98/308 (31%), Positives = 164/308 (53%), Gaps = 23/308 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK + W + D R + N + + NL+ S+DN+AL + F FG +
Sbjct: 78 KGKPVRIMWSQ---RDPSLRKSGVGN-------IFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V ++N S+G+ + F T A++ +MNG L+ + V + + + +R +G
Sbjct: 128 CKVVCDENG-SKGYGFVHFETQEAAERVSEKMNGMLLNDRKVFVGRFKSR-KEREAELGA 185
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
K++ V++KN E +D+E LK F KFG + VK++ DE+GKSKGFGF+ F ++
Sbjct: 186 RAKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A+KA+ EMNG+ + +V A+ K+ F ++K + + ++V NL
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 239 NINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
I++ + F+ FGTITS+ ++ + K GF+ F P+ AT AV+ MNG + +KPL
Sbjct: 304 GIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Query: 295 KVTLSGTK 302
V L+ K
Sbjct: 364 YVALAQRK 371
>gi|444726222|gb|ELW66761.1| Polyadenylate-binding protein 1-like protein [Tupaia chinensis]
Length = 568
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 96/308 (31%), Positives = 165/308 (53%), Gaps = 23/308 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KG+ + W + D G R + N + + NLE S+DN+AL + F FG +
Sbjct: 53 KGQPIRIMWSQ---RDPGLRKSGVGN-------IFIKNLEDSIDNKALYDTFSTFGNILS 102
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V +++ SRGF + F T A++A MNG L+ + V + + + +R +G
Sbjct: 103 CKVVCDEHG-SRGFGFVHFETHDAAQRAISTMNGMLLNDRKVFVGHFKSRR-EREAELGA 160
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
++ ++VKNL VDE L+ F +FG ++ VK++RD +G S+GFGF+ F ++
Sbjct: 161 RVMEFTN--IYVKNLQVDVDERGLQDLFSQFGKMLSVKVMRDSSGHSRGFGFVNFEKHEE 218
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAEIV-----PGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A+KA++ MNG+ + +V A+ K+ F ++K L + ++V NL
Sbjct: 219 AQKAVVHMNGKEVSGRLLYVGRAQKRLERQNELKRRFEQMKQDRLNRYQGVNLYVKNLDD 278
Query: 239 NINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
+IN+ + + F+ +G ITS+ ++++ K GF+ F P+ AT AV+ MNG + +KPL
Sbjct: 279 SINDEKLRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPL 338
Query: 295 KVTLSGTK 302
V L+ K
Sbjct: 339 YVALAQRK 346
Score = 114 bits (284), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 79/258 (30%), Positives = 125/258 (48%), Gaps = 33/258 (12%)
Query: 51 LINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITF 109
L +F G + +RV R+ S +A I F PA+A++A MN +I +P+ I +
Sbjct: 2 LYEKFSPAGPILSIRVCRDVATRRSLCYAYINFQQPADAERALDTMNFEVIKGQPIRIMW 61
Query: 110 VELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGK 169
+ PG R VG +F+KNL +++D + L F FGNI+ K+V DE+G
Sbjct: 62 SQRDPGLRKSGVG---------NIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHG- 111
Query: 170 SKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL------AEIVPGKKVFPKVKPPLL 223
S+GFGF+ F ++ AA++AI MNG ++ FV E G +V
Sbjct: 112 SRGFGFVHFETHDAAQRAISTMNGMLLNDRKVFVGHFKSRREREAELGARVM-------- 163
Query: 224 QPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHAT 278
I+V NL +++ ++LF++FG + S ++ D + GF+ F + A
Sbjct: 164 ---EFTNIYVKNLQVDVDERGLQDLFSQFGKMLSVKVMRDSSGHSRGFGFVNFEKHEEAQ 220
Query: 279 HAVSTMNGHVFKSKPLKV 296
AV MNG + L V
Sbjct: 221 KAVVHMNGKEVSGRLLYV 238
>gi|432102762|gb|ELK30241.1| Polyadenylate-binding protein 1-like protein [Myotis davidii]
Length = 603
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 94/311 (30%), Positives = 170/311 (54%), Gaps = 26/311 (8%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KG+ + W + D G R + N + + NLE S+DN+AL + F FG +
Sbjct: 78 KGQPIRIMWSQ---RDPGLRKSGVGN-------IFIKNLEESIDNKALYDTFSTFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V + + SRGF + F T A++A MNG L+ ++ V ++ + + +R +G
Sbjct: 128 CKVVCDDHG-SRGFGFVHFETREAAQQAISTMNGMLLNNRKVFVSHFKSRQ-EREAELGV 185
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
++ V+VKNL +DE+ L+ F +FG + VK++RD++G S+GFGF+ F ++
Sbjct: 186 RAMEFTN--VYVKNLQMDIDEQGLEELFSQFGKTLSVKVMRDDSGHSRGFGFVNFEKHEE 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNK--------IFVAN 235
A+KA+++MNG+ ++ +V A+ ++ K K ++ ++++ ++V N
Sbjct: 244 AQKAVMDMNGKEVRGQLLYVGRAQKWAERQNELKRKFQQMKQMKQDRLNHYQGVNLYVKN 303
Query: 236 LPSNINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKS 291
L +I+N + F+ +G ITS+ ++++ K GF+ F P+ AT AV+ MNG + +
Sbjct: 304 LDDSIDNERLRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGCILGT 363
Query: 292 KPLKVTLSGTK 302
KPL V L+ K
Sbjct: 364 KPLYVALAQRK 374
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 86/266 (32%), Positives = 135/266 (50%), Gaps = 21/266 (7%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L P V L +F G + +RV R+ S G+A I F PA+A+ A M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSLAGPILSIRVCRDVATRRSLGYAYINFQQPADAELALDTM 72
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N +I +P+ I + + PG R VG +F+KNL E++D + L F FG
Sbjct: 73 NFEVIKGQPIRIMWSQRDPGLRKSGVG---------NIFIKNLEESIDNKALYDTFSTFG 123
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+V D++G S+GFGF+ F + +AA++AI MNG ++ + FVS + ++
Sbjct: 124 NILSCKVVCDDHG-SRGFGFVHFETREAAQQAISTMNGMLLNNRKVFVSHFKSRQEREAE 182
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIE 270
V+ ++V NL +I+ EELF++FG S ++ D + GF+
Sbjct: 183 LGVR-----AMEFTNVYVKNLQMDIDEQGLEELFSQFGKTLSVKVMRDDSGHSRGFGFVN 237
Query: 271 FIMPKHATHAVSTMNGHVFKSKPLKV 296
F + A AV MNG + + L V
Sbjct: 238 FEKHEEAQKAVMDMNGKEVRGQLLYV 263
>gi|194381714|dbj|BAG64226.1| unnamed protein product [Homo sapiens]
Length = 591
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 92/275 (33%), Positives = 155/275 (56%), Gaps = 13/275 (4%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S+DN+AL + F FG + +V ++N S+G+ + F T A++A +MN
Sbjct: 56 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 114
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G L+ + V + + + +R +G K++ V++KN E +D+E LK F KFG
Sbjct: 115 GMLLNDRKVSVGRFKSR-KEREAELGARAKEFTN--VYIKNFGEDMDDERLKDLFGKFGP 171
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPG 211
+ VK++ DE+GKSKGFGF+ F ++ A+KA+ EMNG+ + +V A+
Sbjct: 172 ALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTEL 231
Query: 212 KKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIG 267
K+ F ++K + + ++V NL I++ + F+ FGTITS+ ++ + K G
Sbjct: 232 KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFG 291
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F+ F P+ AT AV+ MNG + +KPL V L+ K
Sbjct: 292 FVCFSSPEEATKAVTGMNGRIVATKPLYVALAQRK 326
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 74/236 (31%), Positives = 115/236 (48%), Gaps = 36/236 (15%)
Query: 74 SRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKV 133
S G+A + F PA+A++A MN +I KPV I + + P R VG +
Sbjct: 6 SLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPPLRKSGVG---------NI 56
Query: 134 FVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNG 193
F+KNL +++D + L F FGNI+ K+V DENG SKG+GF+ F + +AAE+AI +MNG
Sbjct: 57 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNG 115
Query: 194 RMIQHNSTFVSL--------AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEF 245
++ V AE+ K F +++ N ++++
Sbjct: 116 MLLNDRKVSVGRFKSRKEREAELGARAKEF-------------TNVYIKNFGEDMDDERL 162
Query: 246 EELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
++LF +FG S +++D K GF+ F + A AV MNG K + V
Sbjct: 163 KDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 218
>gi|114649018|ref|XP_001154541.1| PREDICTED: polyadenylate-binding protein 3 isoform 5 [Pan
troglodytes]
Length = 633
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 101/309 (32%), Positives = 165/309 (53%), Gaps = 25/309 (8%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK L W + D R + N + V NL+ S++N+AL + FG +
Sbjct: 78 KGKPLRIMWSQ---RDPSLRKSGMGN-------IFVKNLDKSINNKALYDTVSAFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVII-TFVELKPGQRSKPVG 122
V ++N S+G+ + F T A++A +MNG L+ + V + F K +R +G
Sbjct: 128 CNVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNGRKVFVGQFKSRK--EREAELG 184
Query: 123 PEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYK 182
K++ V++KN E +D+E LK F KFG + VK++ DE+GKSKGFGF+ F ++
Sbjct: 185 ARAKEFPN--VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 183 AAEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLP 237
A+KA+ EMNG+ + +V A+ K+ F ++K + + ++V NL
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLD 302
Query: 238 SNINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKP 293
+I++ ++ F+ FGTITS+ ++ + K GF+ F P+ AT AV+ MNG + +KP
Sbjct: 303 DDIDDERLQKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 362
Query: 294 LKVTLSGTK 302
L V L+ K
Sbjct: 363 LYVALAQRK 371
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 83/279 (29%), Positives = 131/279 (46%), Gaps = 37/279 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F G + +RV R+ S +A + F P +A+
Sbjct: 8 YPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRGSSNYAYVNFQHPKDAEH 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KP+ I + + P R +G +FVKNL ++++ + L
Sbjct: 68 ALDTMNFDVIKGKPLRIMWSQRDPSLRKSGMG---------NIFVKNLDKSINNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
FGNI+ +V DENG SKG+GF+ F +++AAE+AI +MNG ++ FV
Sbjct: 119 VSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNGRKVFVGQFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K FP V ++ N ++++ ++LF +FG S +++
Sbjct: 178 EREAELGARAKEFPNV-------------YIKNFGEDMDDERLKDLFGKFGPALSVKVMT 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
D K GF+ F + A AV MNG K + V
Sbjct: 225 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Score = 44.3 bits (103), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTM 284
++V +L ++ + E F+ G I S + D + ++ F PK A HA+ TM
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRGSSNYAYVNFQHPKDAEHALDTM 72
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N V K KPL++ S P +
Sbjct: 73 NFDVIKGKPLRIMWSQRDPSL 93
>gi|82802751|gb|ABB92426.1| PABP3 [Pan troglodytes]
Length = 632
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 99/308 (32%), Positives = 165/308 (53%), Gaps = 23/308 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK L W + D R + N + V NL+ S++N+AL + FG +
Sbjct: 78 KGKPLRIMWSQ---RDPSLRKSGMGN-------IFVKNLDKSINNKALYDTVSAFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
V ++N S+G+ + F T A++A +MNG L+ + V + + + +R +G
Sbjct: 128 CNVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNGRKVFVGQFKSR-KEREAELGA 185
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
K++ V++KN E +D+E LK F KFG + VK++ DE+GKSKGFGF+ F ++
Sbjct: 186 RAKEFPN--VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A+KA+ EMNG+ + +V A+ K+ F ++K + + ++V NL
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDD 303
Query: 239 NINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
+I++ ++ F+ FGTITS+ ++ + K GF+ F P+ AT AV+ MNG + +KPL
Sbjct: 304 DIDDERLQKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Query: 295 KVTLSGTK 302
V L+ K
Sbjct: 364 YVALAQRK 371
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 83/279 (29%), Positives = 131/279 (46%), Gaps = 37/279 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F G + +RV R+ S +A + F P +A+
Sbjct: 8 YPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRGSSNYAYVNFQHPKDAEH 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KP+ I + + P R +G +FVKNL ++++ + L
Sbjct: 68 ALDTMNFDVIKGKPLRIMWSQRDPSLRKSGMG---------NIFVKNLDKSINNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
FGNI+ +V DENG SKG+GF+ F +++AAE+AI +MNG ++ FV
Sbjct: 119 VSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNGRKVFVGQFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K FP V ++ N ++++ ++LF +FG S +++
Sbjct: 178 EREAELGARAKEFPNV-------------YIKNFGEDMDDERLKDLFGKFGPALSVKVMT 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
D K GF+ F + A AV MNG K + V
Sbjct: 225 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Score = 44.3 bits (103), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTM 284
++V +L ++ + E F+ G I S + D + ++ F PK A HA+ TM
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRGSSNYAYVNFQHPKDAEHALDTM 72
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N V K KPL++ S P +
Sbjct: 73 NFDVIKGKPLRIMWSQRDPSL 93
>gi|52346016|ref|NP_001005051.1| poly(A) binding protein, cytoplasmic 1 [Xenopus (Silurana)
tropicalis]
gi|49903495|gb|AAH76931.1| polyadenylate-binding protein 1 [Xenopus (Silurana) tropicalis]
Length = 634
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 97/308 (31%), Positives = 166/308 (53%), Gaps = 23/308 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK + W + D R + N + + NL+ S+DN+AL + F FG +
Sbjct: 78 KGKPVRIMWSQ---RDPSLRKSGVGN-------IFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V ++N S+G+ + F T A++A +MNG L+ + V + + + +R +G
Sbjct: 128 CKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSR-KEREAELGA 185
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
K++ V++KN E +D+E LK F K+G + VK++ D+NGKSKGFGF+ F ++
Sbjct: 186 RAKEFTN--VYIKNFGEDMDDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHED 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A+KA+ +MNG+ + + +V A+ K+ F ++K + + ++V NL
Sbjct: 244 AQKAVDDMNGKDMNGKAIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 239 NINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
I++ + F+ FGTITS+ ++ + K GF+ F P+ AT AV+ MNG + +KPL
Sbjct: 304 GIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Query: 295 KVTLSGTK 302
V L+ K
Sbjct: 364 YVALAQRK 371
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 86/279 (30%), Positives = 134/279 (48%), Gaps = 37/279 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KPV I + + P R VG +F+KNL +++D + L
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVG---------NIFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+GF+ F + +AAE+AI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N ++++ +E+F ++G S +++
Sbjct: 178 EREAELGARAKEF-------------TNVYIKNFGEDMDDERLKEMFGKYGPALSVKVMT 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
D K GF+ F + A AV MNG K + V
Sbjct: 225 DDNGKSKGFGFVSFERHEDAQKAVDDMNGKDMNGKAIYV 263
>gi|354498761|ref|XP_003511482.1| PREDICTED: polyadenylate-binding protein 1-like, partial
[Cricetulus griseus]
Length = 571
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 98/308 (31%), Positives = 164/308 (53%), Gaps = 23/308 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK + W + D R + N + + NL+ S+DN+AL + F FG +
Sbjct: 13 KGKPVRIMWSQ---RDPSLRKSGVGN-------IFIKNLDKSIDNKALYDTFSAFGNILS 62
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V ++N S+G+ + F T A++A +MNG L+ + V + + + +R +G
Sbjct: 63 CKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR-KEREAELGA 120
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
K++ V++KN E +D+E LK F KFG + VK++ DE+GKSKGFGF+ F ++
Sbjct: 121 RAKEFTN--VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 178
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A+KA+ EMNG+ + +V A+ K+ F ++K + + ++V NL
Sbjct: 179 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 238
Query: 239 NINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
I++ + F+ FGTITS+ ++ + K GF+ F P+ AT AV+ MNG + +KP
Sbjct: 239 GIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPF 298
Query: 295 KVTLSGTK 302
V L+ K
Sbjct: 299 YVALAQRK 306
>gi|344257059|gb|EGW13163.1| Polyadenylate-binding protein 1 [Cricetulus griseus]
Length = 565
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 98/308 (31%), Positives = 164/308 (53%), Gaps = 23/308 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK + W + D R + N + + NL+ S+DN+AL + F FG +
Sbjct: 7 KGKPVRIMWSQ---RDPSLRKSGVGN-------IFIKNLDKSIDNKALYDTFSAFGNILS 56
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V ++N S+G+ + F T A++A +MNG L+ + V + + + +R +G
Sbjct: 57 CKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR-KEREAELGA 114
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
K++ V++KN E +D+E LK F KFG + VK++ DE+GKSKGFGF+ F ++
Sbjct: 115 RAKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 172
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A+KA+ EMNG+ + +V A+ K+ F ++K + + ++V NL
Sbjct: 173 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 232
Query: 239 NINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
I++ + F+ FGTITS+ ++ + K GF+ F P+ AT AV+ MNG + +KP
Sbjct: 233 GIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPF 292
Query: 295 KVTLSGTK 302
V L+ K
Sbjct: 293 YVALAQRK 300
>gi|403305068|ref|XP_003943097.1| PREDICTED: polyadenylate-binding protein 1 [Saimiri boliviensis
boliviensis]
Length = 803
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 92/275 (33%), Positives = 155/275 (56%), Gaps = 13/275 (4%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S+DN+AL + F FG + +V ++N S+G+ + F T A++A +MN
Sbjct: 268 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 326
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G L+ + V + + + +R +G K++ V++KN E +D+E LK F KFG
Sbjct: 327 GMLLNDRKVFVGRFKSR-KEREAELGARAKEF--TNVYIKNFGEDMDDERLKDLFGKFGP 383
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPG 211
+ VK++ DE+GKSKGFGF+ F ++ A+KA+ EMNG+ + +V A+
Sbjct: 384 ALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTEL 443
Query: 212 KKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIG 267
K+ F ++K + + ++V NL I++ + F+ FGTITS+ ++ + K G
Sbjct: 444 KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFG 503
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F+ F P+ AT AV+ MNG + +KPL V L+ K
Sbjct: 504 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 538
>gi|395829049|ref|XP_003787673.1| PREDICTED: polyadenylate-binding protein 1-like [Otolemur
garnettii]
Length = 611
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 98/311 (31%), Positives = 166/311 (53%), Gaps = 29/311 (9%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KG+ + W + D G R + N + + NLE S+DN+AL + F FG +
Sbjct: 78 KGQPIRIMWSQ---RDPGLRKSGVGN-------IFIKNLEASIDNKALYDTFSTFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+VA +++ SRGF + F T A+ A MNG L+ V FV +R + V
Sbjct: 128 CKVACDEHG-SRGFGFVHFETHEAAQHAINTMNGMLLNDHKV---FVGHFKSRREREVEL 183
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
+ + ++VKNL VDE+ L+ F +FG ++ VK++RD +G S+GFGF+ F +++
Sbjct: 184 GARAMEFTNIYVKNLQADVDEQGLQELFSQFGKMLSVKVMRDSSGHSRGFGFVNFETHEE 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLA--------EIVPGKKVFPKVKPPLLQPARKNKIFVAN 235
A+KA++ MNG+ + +V A E+ K+ F ++K + + ++V N
Sbjct: 244 AQKAVVHMNGKEVSGRLLYVGRAQKRVERQNEL---KRRFEQMKQDRMNRYQGVNLYVKN 300
Query: 236 LPSNINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKS 291
L +I++ + + F+ +G ITS+ ++++ K GF+ F P+ AT AV+ MNG + +
Sbjct: 301 LDDSIDDEKLRKEFSPYGMITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGT 360
Query: 292 KPLKVTLSGTK 302
KPL V L+ K
Sbjct: 361 KPLYVALAQRK 371
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 84/277 (30%), Positives = 133/277 (48%), Gaps = 33/277 (11%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKK 90
Y L+V +L V L +F G + +RV R+ S G+A I F PA+A++
Sbjct: 8 YPLASLYVGDLHADVTEALLYEKFSPVGPILSIRVCRDVATRRSLGYAYINFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I +P+ I + + PG R VG +F+KNL ++D + L
Sbjct: 68 ALDTMNFEMIKGQPIRIMWSQRDPGLRKSGVG---------NIFIKNLEASIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+ DE+G S+GFGF+ F +++AA+ AI MNG ++ + FV
Sbjct: 119 FSTFGNILSCKVACDEHG-SRGFGFVHFETHEAAQHAINTMNGMLLNDHKVFVGHFKSRR 177
Query: 206 -AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD- 263
E+ G + I+V NL ++++ +ELF++FG + S ++ D
Sbjct: 178 EREVELGARAM-----------EFTNIYVKNLQADVDEQGLQELFSQFGKMLSVKVMRDS 226
Query: 264 ----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
+ GF+ F + A AV MNG + L V
Sbjct: 227 SGHSRGFGFVNFETHEEAQKAVVHMNGKEVSGRLLYV 263
>gi|64970|emb|CAA40721.1| polyA binding protein [Xenopus laevis]
Length = 633
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 91/275 (33%), Positives = 155/275 (56%), Gaps = 13/275 (4%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S+DN+AL + F FG + +V ++N S+G+ + F T A++A +MN
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMN 159
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G L+ + V + + + +R +G K++ V++KN + +++E LK F K+G
Sbjct: 160 GMLLNDRKVFVGRFKSR-KEREAELGARAKEFTN--VYIKNFGDDMNDERLKEMFGKYGP 216
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPG 211
+ VK++ D+NGKSKGFGF+ F ++ A+KA+ EMNG+ + S FV A+
Sbjct: 217 ALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQTEL 276
Query: 212 KKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIG 267
K+ F ++K + + ++V NL I++ + F FGTITS+ ++ + K G
Sbjct: 277 KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFLPFGTITSAKVMMEGGRSKGFG 336
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F+ F P+ AT AV+ MNG + +KPL V L+ K
Sbjct: 337 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 371
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 85/279 (30%), Positives = 133/279 (47%), Gaps = 37/279 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I +PV I + + P R VG +F+KNL +++D + L
Sbjct: 68 ALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVG---------NIFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+GF+ F + +AAE+AI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N ++N+ +E+F ++G S +++
Sbjct: 178 EREAELGARAKEF-------------TNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMT 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
D K GF+ F + A AV MNG K + V
Sbjct: 225 DDNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFV 263
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L+V NL+ +D++ L EF FGT+ +V + S+GF + F++P EA KA
Sbjct: 291 YQGVNLYVKNLDDGIDDERLRKEFLPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKA 349
Query: 92 RVEMNGHLIGSKPVIITFVELK 113
EMNG ++ +KP+ + + K
Sbjct: 350 VTEMNGRIVATKPLYVALAQRK 371
>gi|94730404|sp|P20965.3|PABPA_XENLA RecName: Full=Polyadenylate-binding protein 1-A; Short=PABP-1-A;
Short=Poly(A)-binding protein 1-A; Short=xPABP1-A;
AltName: Full=Cytoplasmic poly(A)-binding protein 1-A
gi|30353795|gb|AAH52100.1| Pabpc1 protein [Xenopus laevis]
Length = 633
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 91/275 (33%), Positives = 155/275 (56%), Gaps = 13/275 (4%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S+DN+AL + F FG + +V ++N S+G+ + F T A++A +MN
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMN 159
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G L+ + V + + + +R +G K++ V++KN + +++E LK F K+G
Sbjct: 160 GMLLNDRKVFVGRFKSR-KEREAELGARAKEFTN--VYIKNFGDDMNDERLKEMFGKYGP 216
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPG 211
+ VK++ D+NGKSKGFGF+ F ++ A+KA+ EMNG+ + S FV A+
Sbjct: 217 ALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQTEL 276
Query: 212 KKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIG 267
K+ F ++K + + ++V NL I++ + F FGTITS+ ++ + K G
Sbjct: 277 KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFLPFGTITSAKVMMEGGRSKGFG 336
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F+ F P+ AT AV+ MNG + +KPL V L+ K
Sbjct: 337 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 371
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 85/279 (30%), Positives = 133/279 (47%), Gaps = 37/279 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I +PV I + + P R VG +F+KNL +++D + L
Sbjct: 68 ALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVG---------NIFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+GF+ F + +AAE+AI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N ++N+ +E+F ++G S +++
Sbjct: 178 EREAELGARAKEF-------------TNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMT 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
D K GF+ F + A AV MNG K + V
Sbjct: 225 DDNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFV 263
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L+V NL+ +D++ L EF FGT+ +V + S+GF + F++P EA KA
Sbjct: 291 YQGVNLYVKNLDDGIDDERLRKEFLPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKA 349
Query: 92 RVEMNGHLIGSKPVIITFVELK 113
EMNG ++ +KP+ + + K
Sbjct: 350 VTEMNGRIVATKPLYVALAQRK 371
>gi|226358689|gb|ACO51197.1| poly A binding protein, cytoplasmic 1 a [Hypophthalmichthys
nobilis]
Length = 290
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 84/267 (31%), Positives = 152/267 (56%), Gaps = 13/267 (4%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S+DN+AL + F FG + +V ++N S+G+ + F T A++A +MN
Sbjct: 28 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMN 86
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G L+ + V + + + +R +G K++ V++KN E +D+E+LK F K+G
Sbjct: 87 GMLLNDRKVFVGRFKSRK-ERGAEMGARAKEFTN--VYIKNFGEDMDDEKLKEIFSKYGP 143
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPG 211
+ ++++ DE+GKSKGFGF+ F ++ A++A+ EMNG+ + +V A+
Sbjct: 144 ALSIRVMTDESGKSKGFGFVSFERHEDAQRAVDEMNGKEMNGKQVYVGRAQKKGERQTEL 203
Query: 212 KKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIG 267
K+ F ++K + + ++V NL +++ + F+ FGTITS+ ++ + K G
Sbjct: 204 KRKFEQMKQDRMTRYQGVNLYVKNLDDGLDDERLRKEFSPFGTITSAKVMMEGGRSKGFG 263
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPL 294
F+ F P+ AT AV+ MNG + +KPL
Sbjct: 264 FVCFSSPEEATKAVTEMNGRIVATKPL 290
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 104/211 (49%), Gaps = 36/211 (17%)
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
+I +PV I + + P R VG +F+KNL +++D + L F FGNI+
Sbjct: 3 VIKGRPVRIMWSQRDPSLRKSGVG---------NIFIKNLDKSIDNKALYDTFSAFGNIL 53
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL--------AEIVP 210
K+V DENG SKG+GF+ F +++AAE+AI +MNG ++ FV AE+
Sbjct: 54 SCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKERGAEMGA 112
Query: 211 GKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KH 265
K F V ++ N ++++ + +E+F+++G S +++D K
Sbjct: 113 RAKEFTNV-------------YIKNFGEDMDDEKLKEIFSKYGPALSIRVMTDESGKSKG 159
Query: 266 IGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
GF+ F + A AV MNG K + V
Sbjct: 160 FGFVSFERHEDAQRAVDEMNGKEMNGKQVYV 190
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L+V NL+ +D++ L EF FGT+ +V + S+GF + F++P EA KA
Sbjct: 218 YQGVNLYVKNLDDGLDDERLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKA 276
Query: 92 RVEMNGHLIGSKPV 105
EMNG ++ +KP+
Sbjct: 277 VTEMNGRIVATKPL 290
>gi|348563863|ref|XP_003467726.1| PREDICTED: polyadenylate-binding protein 1-like [Cavia porcellus]
Length = 613
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 95/308 (30%), Positives = 166/308 (53%), Gaps = 23/308 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KG+ + W + D G R + N + + NLE S+D++AL + F FG +
Sbjct: 78 KGQPIRIMWSQ---RDPGLRKSGVGN-------VFIKNLEDSIDSKALYDTFSTFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+VA +++ SRGF + F T A++A MNG L+ + V + + + +R +G
Sbjct: 128 CKVACDEHG-SRGFGFVHFETNEAAQQAIGTMNGMLLNDRKVFVGHFKSQ-REREAELGA 185
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
+ ++ ++VKNL +DE+ L+ F FGN++ VK++RD +G S+GFGF+ F ++
Sbjct: 186 QALEFTN--IYVKNLSVDMDEQGLQDLFFAFGNMLSVKVMRDNSGHSRGFGFVNFEKHEE 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAEIVPG-----KKVFPKVKPPLLQPARKNKIFVANLPS 238
A+KA+ MNG+ + +V A+ K+ F ++K R ++V NL
Sbjct: 244 AQKAVDHMNGKEVSGQQLYVGRAQKRAERQNELKRRFEQLKQDRQTRYRGVNLYVKNLDD 303
Query: 239 NINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
+I++ + +F+ +G ITS+ ++++ K GF+ F P+ AT AV+ MNG + +KPL
Sbjct: 304 SISDEKLRTVFSPYGVITSAKVMTEGDHSKGFGFVCFSSPEEATKAVTEMNGCIVGTKPL 363
Query: 295 KVTLSGTK 302
V L+ K
Sbjct: 364 YVALAQRK 371
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 86/273 (31%), Positives = 132/273 (48%), Gaps = 25/273 (9%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKK 90
Y + L+V +L P V L F G + +RV R+ S G+A I F PA+A++
Sbjct: 8 YPLSSLYVGDLHPDVTEAMLYETFSPVGPILSIRVCRDVATRRSLGYAYINFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I +P+ I + + PG R VG VF+KNL +++D + L
Sbjct: 68 ALDTMNFEVIKGQPIRIMWSQRDPGLRKSGVG---------NVFIKNLEDSIDSKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVP 210
F FGNI+ K+ DE+G S+GFGF+ F + +AA++AI MNG ++ FV
Sbjct: 119 FSTFGNILSCKVACDEHG-SRGFGFVHFETNEAAQQAIGTMNGMLLNDRKVFV------- 170
Query: 211 GKKVFPKVKPPLL--QPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----- 263
G + + L Q I+V NL +++ ++LF FG + S ++ D
Sbjct: 171 GHFKSQREREAELGAQALEFTNIYVKNLSVDMDEQGLQDLFFAFGNMLSVKVMRDNSGHS 230
Query: 264 KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
+ GF+ F + A AV MNG + L V
Sbjct: 231 RGFGFVNFEKHEEAQKAVDHMNGKEVSGQQLYV 263
Score = 41.2 bits (95), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 6/83 (7%)
Query: 229 NKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGF--IEFIMPKHATHAVS 282
+ ++V +L ++ + E F+ G I S + D + +G+ I F P A A+
Sbjct: 11 SSLYVGDLHPDVTEAMLYETFSPVGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 283 TMNGHVFKSKPLKVTLSGTKPGV 305
TMN V K +P+++ S PG+
Sbjct: 71 TMNFEVIKGQPIRIMWSQRDPGL 93
>gi|397482906|ref|XP_003812655.1| PREDICTED: polyadenylate-binding protein 3-like [Pan paniscus]
Length = 634
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 99/308 (32%), Positives = 164/308 (53%), Gaps = 23/308 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK L W + D R + N + V NL+ S++N+AL + FG +
Sbjct: 78 KGKPLRIMWSQ---RDPSLRKSGMGN-------IFVKNLDKSINNKALYDTVSAFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
V ++N S+G+ + F T A++A +MNG L+ + V + + + +R +G
Sbjct: 128 CNVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNGRKVFVGQFKSR-KEREAELGA 185
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
K++ V++KN E +D+E LK F KFG + VK++ DE+GKSKGFGF+ F ++
Sbjct: 186 RAKEFPN--VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A+KA+ EMNG+ + +V A+ K+ F ++K + + ++V NL
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDD 303
Query: 239 NINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
+I++ + F+ FGTITS+ ++ + K GF+ F P+ AT AV+ MNG + +KPL
Sbjct: 304 DIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Query: 295 KVTLSGTK 302
V L+ K
Sbjct: 364 YVALAQRK 371
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 83/279 (29%), Positives = 131/279 (46%), Gaps = 37/279 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F G + +RV R+ S +A + F P +A+
Sbjct: 8 YPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRGSSNYAYVNFQHPKDAEH 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KP+ I + + P R +G +FVKNL ++++ + L
Sbjct: 68 ALDTMNFDVIKGKPLRIMWSQRDPSLRKSGMG---------NIFVKNLDKSINNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
FGNI+ +V DENG SKG+GF+ F +++AAE+AI +MNG ++ FV
Sbjct: 119 VSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNGRKVFVGQFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K FP V ++ N ++++ ++LF +FG S +++
Sbjct: 178 EREAELGARAKEFPNV-------------YIKNFGEDMDDERLKDLFGKFGPALSVKVMT 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
D K GF+ F + A AV MNG K + V
Sbjct: 225 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Score = 44.3 bits (103), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTM 284
++V +L ++ + E F+ G I S + D + ++ F PK A HA+ TM
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRGSSNYAYVNFQHPKDAEHALDTM 72
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N V K KPL++ S P +
Sbjct: 73 NFDVIKGKPLRIMWSQRDPSL 93
>gi|410910966|ref|XP_003968961.1| PREDICTED: polyadenylate-binding protein 1-like [Takifugu rubripes]
Length = 635
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 86/275 (31%), Positives = 156/275 (56%), Gaps = 13/275 (4%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S+DN+AL + F FG + +V ++N S+G+ + F T A++A +MN
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 159
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G L+ + V + + + +R +G +++ V++KN + +DEE+L+ F K+GN
Sbjct: 160 GMLLNDRKVFVGRFKSRK-EREAELGARAREFTN--VYIKNFGDDMDEEKLRDVFNKYGN 216
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPG 211
+ ++++ D++GKS+GFGF+ F ++ A+KA+ EMNG+ + +V A+
Sbjct: 217 AMSIRVMTDDSGKSRGFGFVSFERHEDAQKAVDEMNGKEMNGKPIYVGRAQKKVERQAEL 276
Query: 212 KKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLV----SDKHIG 267
K+ F ++K + + ++V NL I++ + F+ FGTITS+ ++ K G
Sbjct: 277 KRKFEQMKQDRMTRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMLEGGRSKGFG 336
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F+ F P+ AT AV+ MNG + +KPL V L+ K
Sbjct: 337 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 371
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 84/273 (30%), Positives = 137/273 (50%), Gaps = 25/273 (9%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHTDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I +PV I + + P R VG +F+KNL +++D + L
Sbjct: 68 ALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVG---------NIFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVP 210
F FGNI+ K+V DENG SKG+GF+ F + +AAE+AI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV------- 170
Query: 211 GK-KVFPKVKPPLLQPARK-NKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----- 263
G+ K + + L AR+ +++ N +++ + ++F ++G S +++D
Sbjct: 171 GRFKSRKEREAELGARAREFTNVYIKNFGDDMDEEKLRDVFNKYGNAMSIRVMTDDSGKS 230
Query: 264 KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
+ GF+ F + A AV MNG KP+ V
Sbjct: 231 RGFGFVSFERHEDAQKAVDEMNGKEMNGKPIYV 263
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L+V NL+ +D++ L EF FGT+ +V + S+GF + F++P EA KA
Sbjct: 291 YQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVML-EGGRSKGFGFVCFSSPEEATKA 349
Query: 92 RVEMNGHLIGSKPVIITFVELK 113
EMNG ++ +KP+ + + K
Sbjct: 350 VTEMNGRIVATKPLYVALAQRK 371
>gi|449268618|gb|EMC79472.1| Polyadenylate-binding protein 4 [Columba livia]
Length = 630
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 99/308 (32%), Positives = 162/308 (52%), Gaps = 23/308 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK + W + D R + N + + NL+ S+DN+AL + F FG +
Sbjct: 78 KGKPIRIMWSQ---RDPSLRKSGVGN-------VFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V ++N S+G+A + F T A +A +MNG L+ + V + + + +R +G
Sbjct: 128 CKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRK-EREAELGA 185
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
+ K++ V++KN + +D+E LK F K+G + VK++ D GKSKGFGF+ F ++
Sbjct: 186 KAKEFTN--VYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPTGKSKGFGFVSFEKHED 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A KA+ EMNG+ I FV A+ K+ F ++K L + +++ NL
Sbjct: 244 ANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERLSRYQGVNLYIKNLDD 303
Query: 239 NINNSEFEELFARFGTITSSSLV----SDKHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
I++ + + F+ FG ITS+ ++ K GF+ F P+ AT AV+ MNG + SKPL
Sbjct: 304 TIDDEKLRKEFSPFGAITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPL 363
Query: 295 KVTLSGTK 302
V L+ K
Sbjct: 364 YVALAQRK 371
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 130/269 (48%), Gaps = 37/269 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KP+ I + + P R VG VF+KNL +++D + L
Sbjct: 68 ALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+ F+ F + AA++AI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N ++++ +ELF+++G S +++
Sbjct: 178 EREAELGAKAKEF-------------TNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMT 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNG 286
D K GF+ F + A AV MNG
Sbjct: 225 DPTGKSKGFGFVSFEKHEDANKAVEEMNG 253
>gi|224081795|ref|XP_002196994.1| PREDICTED: polyadenylate-binding protein 4 [Taeniopygia guttata]
Length = 629
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 92/273 (33%), Positives = 152/273 (55%), Gaps = 13/273 (4%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+DN+AL + F FG + +V ++N S+G+A + F T A +A +MNG
Sbjct: 103 IKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGM 161
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ + V + + + +R +G + K++ V++KN + +D+E LK F K+G +
Sbjct: 162 LLNDRKVFVGRFKSRK-EREAELGAKAKEFTN--VYIKNFGDDMDDERLKELFGKYGKTL 218
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKK 213
VK++ D GKSKGFGF+ F ++ A KA+ EMNG+ I FV A+ K+
Sbjct: 219 SVKVMTDPTGKSKGFGFVSFEKHEEANKAVEEMNGKDINGKMLFVGRAQKKAERQAELKR 278
Query: 214 VFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLV----SDKHIGFI 269
F ++K L + +++ NL I++ + + F+ FG+ITS+ ++ K GF+
Sbjct: 279 RFEQLKQERLSRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFV 338
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F P+ AT AV+ MNG + SKPL V L+ K
Sbjct: 339 CFSSPEEATKAVTEMNGRIVGSKPLYVALAQRK 371
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 85/279 (30%), Positives = 132/279 (47%), Gaps = 37/279 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L P + L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KP+ I + + P R VG VF+KNL +++D + L
Sbjct: 68 ALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+ F+ F + AA++AI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N ++++ +ELF ++G S +++
Sbjct: 178 EREAELGAKAKEF-------------TNVYIKNFGDDMDDERLKELFGKYGKTLSVKVMT 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
D K GF+ F + A AV MNG K L V
Sbjct: 225 DPTGKSKGFGFVSFEKHEEANKAVEEMNGKDINGKMLFV 263
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L++ NL+ ++D++ L EF FG++ +V ++ S+GF + F++P EA KA
Sbjct: 291 YQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKA 349
Query: 92 RVEMNGHLIGSKPVIITFVELK 113
EMNG ++GSKP+ + + K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
>gi|301624826|ref|XP_002941699.1| PREDICTED: polyadenylate-binding protein 4-like [Xenopus (Silurana)
tropicalis]
Length = 632
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 90/273 (32%), Positives = 154/273 (56%), Gaps = 13/273 (4%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+DN+AL + F FG + +V ++N S+G+A + F T A +A +MNG
Sbjct: 109 IKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGM 167
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ + V + + + +R +G + K++ V++KN E +D+E LK F K+G +
Sbjct: 168 LLNDRKVFVGRFKCR-REREAELGAKAKEFTN--VYIKNFGEDMDDERLKETFSKYGKTL 224
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKK 213
VK++ D +GKSKGFGF+ F ++ A KA+ +MNG+ + FV A+ K+
Sbjct: 225 SVKVMTDPSGKSKGFGFVSFERHEDANKAVDDMNGKDVNGKIMFVGRAQKKVERQAELKR 284
Query: 214 VFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGFI 269
F ++K + + +++ NL I++ + + F+ FG+ITS+ ++ + K GF+
Sbjct: 285 RFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEEGRSKGFGFV 344
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F P+ AT AV+ MNG + SKPL V L+ K
Sbjct: 345 CFSSPEEATKAVTEMNGRIVGSKPLYVALAQRK 377
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 80/275 (29%), Positives = 128/275 (46%), Gaps = 43/275 (15%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F G + +RV R+ S G+A + F PA+ +
Sbjct: 8 YPMASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADGEY 67
Query: 91 A-----RVEMNGHLIGSKP-VIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDE 144
R+++ H+ G K ++ F E P R VG VF+KNL +++D
Sbjct: 68 GNLLFDRMDVCFHVAGGKAFTLLWFSERDPSLRKSGVG---------NVFIKNLDKSIDN 118
Query: 145 EELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVS 204
+ L F FGNI+ K+V DENG SKG+ F+ F + AA++AI +MNG ++ FV
Sbjct: 119 KALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVG 177
Query: 205 L--------AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTIT 256
AE+ K F +++ N ++++ +E F+++G
Sbjct: 178 RFKCRREREAELGAKAKEF-------------TNVYIKNFGEDMDDERLKETFSKYGKTL 224
Query: 257 SSSLVSD-----KHIGFIEFIMPKHATHAVSTMNG 286
S +++D K GF+ F + A AV MNG
Sbjct: 225 SVKVMTDPSGKSKGFGFVSFERHEDANKAVDDMNG 259
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 102/179 (56%), Gaps = 10/179 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+++ N +D++ L F K+G V+V + + +S+GF + F +A KA +MN
Sbjct: 199 VYIKNFGEDMDDERLKETFSKYGKTLSVKVMTDPSGKSKGFGFVSFERHEDANKAVDDMN 258
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKV--------FVKNLVETVDEEELK 148
G + K + + + K +R + +Q K++++ ++KNL +T+D+E+L+
Sbjct: 259 GKDVNGKIMFVGRAQ-KKVERQAELKRRFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 317
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
F FG+I K++ +E G+SKGFGF+ F S + A KA+ EMNGR++ +V+LA+
Sbjct: 318 KEFSPFGSITSAKVMLEE-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 375
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L++ NL+ ++D++ L EF FG++ +V + S+GF + F++P EA KA
Sbjct: 297 YQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEEG-RSKGFGFVCFSSPEEATKA 355
Query: 92 RVEMNGHLIGSKPVIITFVELK 113
EMNG ++GSKP+ + + K
Sbjct: 356 VTEMNGRIVGSKPLYVALAQRK 377
>gi|148229527|ref|NP_001085857.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Xenopus
laevis]
gi|49118872|gb|AAH73435.1| MGC80927 protein [Xenopus laevis]
Length = 626
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 97/308 (31%), Positives = 165/308 (53%), Gaps = 23/308 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK + W + D R + N + + NL+ S+DN+AL + F FG +
Sbjct: 78 KGKPIRIMWSQ---RDPSLRKSGVGN-------VFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V ++N S+G+A + F T A +A +MNG L+ + V + + + +R +G
Sbjct: 128 CKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKCR-REREAELGA 185
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
+ K++ V++KN E +D+E LK F K+G + VK++ D +GKSKGFGF+ F ++
Sbjct: 186 KAKEFTN--VYIKNFGEDMDDERLKETFSKYGKTLSVKVMTDPSGKSKGFGFVSFERHED 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A KA+ +MNG+ + FV A+ K+ F ++K + + +++ NL
Sbjct: 244 ANKAVDDMNGKDVNGKIMFVGRAQKKVERQAELKRRFEQLKQERISRYQGVNLYIKNLDD 303
Query: 239 NINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
I++ + + F+ FG+ITS+ ++ + K GF+ F P+ AT AV+ MNG + SKPL
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLEEGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPL 363
Query: 295 KVTLSGTK 302
V L+ K
Sbjct: 364 YVALAQRK 371
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 82/269 (30%), Positives = 129/269 (47%), Gaps = 37/269 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KP+ I + + P R VG VF+KNL +++D + L
Sbjct: 68 ALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+ F+ F + AA++AI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKCRR 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N ++++ +E F+++G S +++
Sbjct: 178 EREAELGAKAKEF-------------TNVYIKNFGEDMDDERLKETFSKYGKTLSVKVMT 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNG 286
D K GF+ F + A AV MNG
Sbjct: 225 DPSGKSKGFGFVSFERHEDANKAVDDMNG 253
>gi|344279674|ref|XP_003411612.1| PREDICTED: polyadenylate-binding protein 1 [Loxodonta africana]
Length = 612
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 96/311 (30%), Positives = 166/311 (53%), Gaps = 29/311 (9%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KG+ + W + D G R + N + + NLE S+DN+AL + F FG +
Sbjct: 78 KGQPIRIMWSQ---RDPGLRKSGVGN-------IFIKNLEDSIDNKALYDTFSTFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V +++ SRGF + F T A++A MNG L+ + V FV +R +
Sbjct: 128 CKVVCDEHG-SRGFGFVHFETHEAAQQAISTMNGMLLNDRKV---FVGHFKSRREREAEL 183
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
+ + ++VKNL +DE+ L+ F +FG ++ VK+++D NG S+GFGF+ F ++
Sbjct: 184 RARAMEFTNIYVKNLQVDMDEQGLQDLFSQFGKLLSVKVMKDNNGHSRGFGFVNFEKHEE 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLA--------EIVPGKKVFPKVKPPLLQPARKNKIFVAN 235
A+KA+++MNG+ + +V A E+ K+ F ++K L + ++V N
Sbjct: 244 AQKAVMDMNGKEVSGRQLYVGRAQKRVERQNEL---KRKFEQMKQDRLNRYQGVNLYVKN 300
Query: 236 LPSNINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKS 291
L +I++ + + F+ +G ITS+ ++++ K GF+ F P+ AT AV+ MNG + +
Sbjct: 301 LDDSIDDEKLRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIIGT 360
Query: 292 KPLKVTLSGTK 302
KPL V L+ K
Sbjct: 361 KPLYVALAQRK 371
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 81/271 (29%), Positives = 134/271 (49%), Gaps = 21/271 (7%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKK 90
Y L+V +L V L +F G + +RV R+ S +A I F PA+A++
Sbjct: 8 YPLASLYVGDLHADVTEAMLYEKFLPAGPILSIRVCRDVATRRSLRYAYINFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I +P+ I + + PG R VG +F+KNL +++D + L
Sbjct: 68 ALDTMNFEVIKGQPIRIMWSQRDPGLRKSGVG---------NIFIKNLEDSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVP 210
F FGNI+ K+V DE+G S+GFGF+ F +++AA++AI MNG ++ FV +
Sbjct: 119 FSTFGNILSCKVVCDEHG-SRGFGFVHFETHEAAQQAISTMNGMLLNDRKVFVGHFKSRR 177
Query: 211 GKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KH 265
++ + + I+V NL +++ ++LF++FG + S ++ D +
Sbjct: 178 EREAELRAR-----AMEFTNIYVKNLQVDMDEQGLQDLFSQFGKLLSVKVMKDNNGHSRG 232
Query: 266 IGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
GF+ F + A AV MNG + L V
Sbjct: 233 FGFVNFEKHEEAQKAVMDMNGKEVSGRQLYV 263
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 52/87 (59%), Gaps = 1/87 (1%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L+V NL+ S+D++ L EF +G + +V + S+GF + F++P EA KA
Sbjct: 291 YQGVNLYVKNLDDSIDDEKLRKEFSPYGVITSAKVM-TEGGHSKGFGFVCFSSPEEATKA 349
Query: 92 RVEMNGHLIGSKPVIITFVELKPGQRS 118
EMNG +IG+KP+ + + K +R+
Sbjct: 350 VTEMNGRIIGTKPLYVALAQRKEERRA 376
>gi|440899695|gb|ELR50961.1| Polyadenylate-binding protein 1-like protein, partial [Bos
grunniens mutus]
Length = 618
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 98/308 (31%), Positives = 164/308 (53%), Gaps = 29/308 (9%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KG+ + W + D G R + N + + NLE S+DN+AL + F FG +
Sbjct: 78 KGQPIRIMWSQ---RDPGLRKSGVGN-------IFIKNLEDSIDNKALYDTFSTFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V +++ SRGF + F T A+ A MNG L+ + V FV +R + V
Sbjct: 128 CKVVCDEHG-SRGFGFVHFETHEAAQNAISTMNGMLLNDRKV---FVGHFKSRREREVEL 183
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
+ + ++VKNL VDE+ L+ F +FG ++ VK++RD +G S+GFGF+ F ++
Sbjct: 184 GARAMEFTNIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDVSGHSRGFGFVNFEKHEE 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLA--------EIVPGKKVFPKVKPPLLQPARKNKIFVAN 235
A+KA++ MNGR + +V A E+ K+ F ++K L + ++V N
Sbjct: 244 AQKAVVNMNGREVSGRLLYVGRAQKRVERQNEL---KRRFEQMKQDRLTRYQGVNLYVKN 300
Query: 236 LPSNINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKS 291
L +I++ + + F+ +G ITS+ ++++ K GF+ F P+ AT AV+ MNG + +
Sbjct: 301 LDDSIDDEKLRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGT 360
Query: 292 KPLKVTLS 299
KPL V L+
Sbjct: 361 KPLYVALA 368
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 85/277 (30%), Positives = 134/277 (48%), Gaps = 33/277 (11%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F G + +RV R+ S G+A I F PA+A++
Sbjct: 8 YPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I +P+ I + + PG R VG +F+KNL +++D + L
Sbjct: 68 ALDTMNFEVIKGQPIRIMWSQRDPGLRKSGVG---------NIFIKNLEDSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DE+G S+GFGF+ F +++AA+ AI MNG ++ FV
Sbjct: 119 FSTFGNILSCKVVCDEHG-SRGFGFVHFETHEAAQNAISTMNGMLLNDRKVFVGHFKSRR 177
Query: 206 -AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD- 263
E+ G + I+V NL +++ ++LF++FG + S ++ D
Sbjct: 178 EREVELGARAM-----------EFTNIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDV 226
Query: 264 ----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
+ GF+ F + A AV MNG + L V
Sbjct: 227 SGHSRGFGFVNFEKHEEAQKAVVNMNGREVSGRLLYV 263
>gi|118101731|ref|XP_417821.2| PREDICTED: polyadenylate-binding protein 4 [Gallus gallus]
Length = 630
Score = 147 bits (372), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 98/308 (31%), Positives = 163/308 (52%), Gaps = 23/308 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK + W + D R + N + + NL+ S+DN+AL + F FG +
Sbjct: 78 KGKPIRIMWSQ---RDPSLRKSGVGN-------VFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V ++N S+G+A + F T A +A +MNG L+ + V + + + +R +G
Sbjct: 128 CKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRK-EREAELGA 185
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
+ K++ V++KN + +D+E LK F K+G + VK++ D GKSKGFGF+ F ++
Sbjct: 186 KAKEFTN--VYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPTGKSKGFGFVSFEKHED 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A KA+ EMNG+ I FV A+ K+ F ++K + + +++ NL
Sbjct: 244 ANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRRFEQLKQERISRYQGVNLYIKNLDD 303
Query: 239 NINNSEFEELFARFGTITSSSLV----SDKHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
I++ + + F+ FG+ITS+ ++ K GF+ F P+ AT AV+ MNG + SKPL
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPL 363
Query: 295 KVTLSGTK 302
V L+ K
Sbjct: 364 YVALAQRK 371
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 130/269 (48%), Gaps = 37/269 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KP+ I + + P R VG VF+KNL +++D + L
Sbjct: 68 ALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+ F+ F + AA++AI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N ++++ +ELF+++G S +++
Sbjct: 178 EREAELGAKAKEF-------------TNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMT 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNG 286
D K GF+ F + A AV MNG
Sbjct: 225 DPTGKSKGFGFVSFEKHEDANKAVEEMNG 253
>gi|91095037|ref|XP_975975.1| PREDICTED: similar to poly A binding protein isoform 4 [Tribolium
castaneum]
gi|270014772|gb|EFA11220.1| hypothetical protein TcasGA2_TC005185 [Tribolium castaneum]
Length = 607
Score = 147 bits (372), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 96/275 (34%), Positives = 157/275 (57%), Gaps = 15/275 (5%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+DN+A+ + F FG + +VA+++N S+G+ + F T A K+ ++NG
Sbjct: 103 IKNLDRSIDNKAMYDTFSAFGNILSCKVAQDENGTSKGYGFVHFETEEAANKSIEKVNGM 162
Query: 99 LIGSKPVII-TFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNI 157
L+ K V + F+ K +R K +G + K + V+VKN E + EE+L++ F K+G I
Sbjct: 163 LLNGKKVYVGRFIPRK--EREKELGEKAKLFTN--VYVKNFGEDLTEEQLRTMFEKYGKI 218
Query: 158 IEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGR-MIQHNSTFVSLAEIVPGKKVFP 216
KI+ ++GKSKGFGF+ F S +AAE A+ +NG+ +I +V A+ ++
Sbjct: 219 TSYKIMSKDDGKSKGFGFVAFESPEAAETAVEALNGKEIIDGKPLYVGRAQKKAERQQEL 278
Query: 217 KVKPPLLQPARKNK-----IFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIG 267
K + L+ R N+ ++V NL I++ + F+ FGTITS+ ++ + K G
Sbjct: 279 KRRFEALKMERLNRYQGVNLYVKNLDDTIDDERLRKEFSPFGTITSAKVMMEDNRSKGFG 338
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F+ F P+ AT AV+ MNG + SKPL V L+ K
Sbjct: 339 FVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRK 373
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 84/274 (30%), Positives = 136/274 (49%), Gaps = 25/274 (9%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L + L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHTDITEAMLFEKFSTAGPVLSIRVCRDLITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN LI +P+ I + + P R VG VF+KNL ++D + +
Sbjct: 68 ALDTMNFDLIKGRPIRIMWSQRDPSLRKSGVG---------NVFIKNLDRSIDNKAMYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVP 210
F FGNI+ K+ +DENG SKG+GF+ F + +AA K+I ++NG ++ N V + +P
Sbjct: 119 FSAFGNILSCKVAQDENGTSKGYGFVHFETEEAANKSIEKVNGMLL--NGKKVYVGRFIP 176
Query: 211 GKKVFPKV--KPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS-----D 263
K+ ++ K L ++V N ++ + +F ++G ITS ++S
Sbjct: 177 RKEREKELGEKAKLF-----TNVYVKNFGEDLTEEQLRTMFEKYGKITSYKIMSKDDGKS 231
Query: 264 KHIGFIEFIMPKHATHAVSTMNG-HVFKSKPLKV 296
K GF+ F P+ A AV +NG + KPL V
Sbjct: 232 KGFGFVAFESPEAAETAVEALNGKEIIDGKPLYV 265
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 99/179 (55%), Gaps = 9/179 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
++V N + + L F+K+G + ++ + +S+GF + F +P A+ A +N
Sbjct: 194 VYVKNFGEDLTEEQLRTMFEKYGKITSYKIMSKDDGKSKGFGFVAFESPEAAETAVEALN 253
Query: 97 G-HLIGSKPVIITFVELKP------GQRSKPVGPEE-KQYKKDKVFVKNLVETVDEEELK 148
G +I KP+ + + K +R + + E +Y+ ++VKNL +T+D+E L+
Sbjct: 254 GKEIIDGKPLYVGRAQKKAERQQELKRRFEALKMERLNRYQGVNLYVKNLDDTIDDERLR 313
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
F FG I K++ ++N +SKGFGF+ F S + A KA+ EMNGR++ +V+LA+
Sbjct: 314 KEFSPFGTITSAKVMMEDN-RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 371
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L+V NL+ ++D++ L EF FGT+ +V N S+GF + F++P EA KA
Sbjct: 293 YQGVNLYVKNLDDTIDDERLRKEFSPFGTITSAKVMMEDN-RSKGFGFVCFSSPEEATKA 351
Query: 92 RVEMNGHLIGSKPVIITFVELK 113
EMNG ++GSKP+ + + K
Sbjct: 352 VTEMNGRIVGSKPLYVALAQRK 373
>gi|194224457|ref|XP_001500563.2| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Equus
caballus]
Length = 612
Score = 147 bits (372), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 95/308 (30%), Positives = 162/308 (52%), Gaps = 23/308 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KG+ + W + D G R + N + + NLE S+DN+AL + F FG +
Sbjct: 78 KGQPIRIMWSQ---RDPGLRKSGVGN-------VFIKNLEDSIDNKALYDTFSTFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V + + SRGF + F T A++A MNG L+ + V + + + +R +G
Sbjct: 128 CKVVCDDHG-SRGFGFVHFETHEAAQQAISTMNGMLLNDRKVFVGHFKSR-REREAELGA 185
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
+ ++VKNL VDE L+ F +FG ++ VK++RD++G S+GFGF+ F ++
Sbjct: 186 RATAFTN--IYVKNLPGHVDERGLQDLFSQFGKMLSVKVMRDDSGHSRGFGFVNFEKHEE 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAEIVPG-----KKVFPKVKPPLLQPARKNKIFVANLPS 238
A+KA+++MNG + +V A+ K+ F K L + ++V NL
Sbjct: 244 AQKAVMDMNGMQVSGRLLYVGRAQKRGERQNELKRRFEHTKQDRLNRCQGVNLYVKNLDD 303
Query: 239 NINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
+I++ + + F+ +G ITS+ ++++ K GF+ F P+ AT AV+ MNG + +KPL
Sbjct: 304 SIDDEKLRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIIGTKPL 363
Query: 295 KVTLSGTK 302
V L+ K
Sbjct: 364 YVALAQRK 371
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 87/279 (31%), Positives = 136/279 (48%), Gaps = 37/279 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F G + +RV R+ S G+A I F PA+A++
Sbjct: 8 YPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I +P+ I + + PG R VG VF+KNL +++D + L
Sbjct: 68 ALDTMNFEVIKGQPIRIMWSQRDPGLRKSGVG---------NVFIKNLEDSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V D++G S+GFGF+ F +++AA++AI MNG ++ FV
Sbjct: 119 FSTFGNILSCKVVCDDHG-SRGFGFVHFETHEAAQQAISTMNGMLLNDRKVFVGHFKSRR 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ F I+V NLP +++ ++LF++FG + S ++
Sbjct: 178 EREAELGARATAF-------------TNIYVKNLPGHVDERGLQDLFSQFGKMLSVKVMR 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
D + GF+ F + A AV MNG + L V
Sbjct: 225 DDSGHSRGFGFVNFEKHEEAQKAVMDMNGMQVSGRLLYV 263
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 64/123 (52%), Gaps = 15/123 (12%)
Query: 1 MKSKGKILEASWDEGISDDEGARSNK-----ENNKVYKENE-----LHVNNLEPSVDNQA 50
M+ G++L G + G R N+ E+ K + N L+V NL+ S+D++
Sbjct: 254 MQVSGRLLYV----GRAQKRGERQNELKRRFEHTKQDRLNRCQGVNLYVKNLDDSIDDEK 309
Query: 51 LINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFV 110
L EF +G + +V + S+GF + F++P EA KA EMNG +IG+KP+ +
Sbjct: 310 LRKEFSPYGVITSAKVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIIGTKPLYVALA 368
Query: 111 ELK 113
+ K
Sbjct: 369 QRK 371
>gi|403290728|ref|XP_003936459.1| PREDICTED: polyadenylate-binding protein 1-like [Saimiri
boliviensis boliviensis]
Length = 614
Score = 147 bits (372), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 95/311 (30%), Positives = 168/311 (54%), Gaps = 29/311 (9%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KG+ + W + D G R + N + + NLE S+DN+AL + F FG +
Sbjct: 78 KGQPIRIMWSQ---RDPGLRKSGVGN-------IFIKNLEDSIDNKALYDTFSTFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V +++ SRGF + F T A++A MNG L+ + V + + + +R+ +G
Sbjct: 128 CKVVCDEHG-SRGFGFVHFETYEAAQQAINTMNGMLLNDRKVFVGHFKSR-RERAAELGA 185
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
++ ++VKNL VDE+ L+ F +FG ++ VK++RD +G+S+ FGF+ F ++
Sbjct: 186 RALEFTN--IYVKNLPADVDEQGLQDLFSQFGKMLSVKVMRDSSGRSRCFGFVNFEKHEE 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLA--------EIVPGKKVFPKVKPPLLQPARKNKIFVAN 235
A+KA++ MNG+ + + S A E+ K+ F ++K L + ++V N
Sbjct: 244 AQKAVVHMNGKEVSGRLLYASRAQKRVERQNEL---KRRFEQMKQDRLSRYQGVNLYVKN 300
Query: 236 LPSNINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKS 291
L +I++ + + F+ +G ITS+ ++++ K GF+ F P+ AT AV+ MNG + +
Sbjct: 301 LDDSIDDGKLRKEFSPYGVITSAKVMTEGSHSKGFGFVCFSSPEEATKAVTEMNGRIVGT 360
Query: 292 KPLKVTLSGTK 302
KPL V L+ K
Sbjct: 361 KPLYVALAQRK 371
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 85/269 (31%), Positives = 136/269 (50%), Gaps = 37/269 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F G++ +RV R+ S G+A I F PA+A++
Sbjct: 8 YPLASLYVGDLHPDVTEAMLYEKFSPAGSILSIRVCRDVATRRSLGYAYINFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN ++ +P+ I + + PG R VG +F+KNL +++D + L
Sbjct: 68 ALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVG---------NIFIKNLEDSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVS------ 204
F FGNI+ K+V DE+G S+GFGF+ F +Y+AA++AI MNG ++ FV
Sbjct: 119 FSTFGNILSCKVVCDEHG-SRGFGFVHFETYEAAQQAINTMNGMLLNDRKVFVGHFKSRR 177
Query: 205 --LAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ G + I+V NLP++++ ++LF++FG + S ++
Sbjct: 178 ERAAEL--GARAL-----------EFTNIYVKNLPADVDEQGLQDLFSQFGKMLSVKVMR 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNG 286
D + GF+ F + A AV MNG
Sbjct: 225 DSSGRSRCFGFVNFEKHEEAQKAVVHMNG 253
>gi|410899897|ref|XP_003963433.1| PREDICTED: embryonic polyadenylate-binding protein-like [Takifugu
rubripes]
Length = 606
Score = 147 bits (372), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 92/305 (30%), Positives = 163/305 (53%), Gaps = 23/305 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KG+ + W + D G R + N + + N++ S+DN+AL + F FG +
Sbjct: 78 KGRPIRIMWSQ---RDPGLRKSGVGN-------IFIKNMDESIDNKALYDTFSAFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V ++ S+G+ + F T A +A MNG L+ + V + + + +R + +G
Sbjct: 128 CKVVCDERG-SKGYGFVHFETEEAANRAIETMNGMLLNDRKVFVGHFKSRK-EREEELG- 184
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
K K +++KN E ++E+LK F FG + V++++DE G+S+GFGF+ F ++
Sbjct: 185 -SKALKFTNIYIKNFGEDYNDEKLKEVFAAFGRTLSVRVMKDERGRSRGFGFVNFAHHED 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A+KA+ EMNG+ + +V A+ K+ F +K +Q + ++V NL
Sbjct: 244 AQKAVDEMNGKELNGKVIYVGRAQKRLERQGELKRKFELIKQDRIQRYQGVNLYVKNLDD 303
Query: 239 NINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
+I++ + FA +GTITS+ +++D + GF+ F P+ AT AV+ MNG + +KPL
Sbjct: 304 SIDDERLRKEFAPYGTITSAKVMTDGPQSRGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Query: 295 KVTLS 299
V L+
Sbjct: 364 YVALA 368
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 87/273 (31%), Positives = 131/273 (47%), Gaps = 23/273 (8%)
Query: 31 VYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAK 89
Y L+V +L P V L +F G + +RV R+ S G+A I F PA+A+
Sbjct: 7 AYPLASLYVGDLHPDVTEAMLYQKFSPAGPIMSIRVCRDIITRRSLGYAYINFQQPADAE 66
Query: 90 KARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKS 149
A MN +I +P+ I + + PG R VG +F+KN+ E++D + L
Sbjct: 67 CALDTMNYDVIKGRPIRIMWSQRDPGLRKSGVG---------NIFIKNMDESIDNKALYD 117
Query: 150 HFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIV 209
F FGNI+ K+V DE G SKG+GF+ F + +AA +AI MNG ++ FV
Sbjct: 118 TFSAFGNILSCKVVCDERG-SKGYGFVHFETEEAANRAIETMNGMLLNDRKVFVGHF--- 173
Query: 210 PGKKVFPKVKPPLLQPARK-NKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----- 263
K + + L A K I++ N + N+ + +E+FA FG S ++ D
Sbjct: 174 ---KSRKEREEELGSKALKFTNIYIKNFGEDYNDEKLKEVFAAFGRTLSVRVMKDERGRS 230
Query: 264 KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
+ GF+ F + A AV MNG K + V
Sbjct: 231 RGFGFVNFAHHEDAQKAVDEMNGKELNGKVIYV 263
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 102/193 (52%), Gaps = 10/193 (5%)
Query: 23 RSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVF 82
R + +K K +++ N +++ L F FG VRV +++ SRGF + F
Sbjct: 179 REEELGSKALKFTNIYIKNFGEDYNDEKLKEVFAAFGRTLSVRVMKDERGRSRGFGFVNF 238
Query: 83 NTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKV--------F 134
+A+KA EMNG + K + + + K +R + + + K+D++ +
Sbjct: 239 AHHEDAQKAVDEMNGKELNGKVIYVGRAQ-KRLERQGELKRKFELIKQDRIQRYQGVNLY 297
Query: 135 VKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGR 194
VKNL +++D+E L+ F +G I K++ D +S+GFGF+ F S + A KA+ EMNGR
Sbjct: 298 VKNLDDSIDDERLRKEFAPYGTITSAKVMTD-GPQSRGFGFVCFSSPEEATKAVTEMNGR 356
Query: 195 MIQHNSTFVSLAE 207
++ +V+LA+
Sbjct: 357 IVATKPLYVALAQ 369
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L+V NL+ S+D++ L EF +GT+ +V + +SRGF + F++P EA KA
Sbjct: 291 YQGVNLYVKNLDDSIDDERLRKEFAPYGTITSAKVMTD-GPQSRGFGFVCFSSPEEATKA 349
Query: 92 RVEMNGHLIGSKPVIITFVELK 113
EMNG ++ +KP+ + + +
Sbjct: 350 VTEMNGRIVATKPLYVALAQRR 371
>gi|82802753|gb|ABB92427.1| PABP3 [Gorilla gorilla]
Length = 630
Score = 147 bits (372), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 99/308 (32%), Positives = 163/308 (52%), Gaps = 23/308 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK L W + D R N + V NL+ S++N+AL + FG +
Sbjct: 78 KGKPLRIMWSQ---RDPSLRKRGVGN-------IFVKNLDKSINNKALYDTVSAFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V ++N S+G+ + F T A++A +MNG L+ + V + + + +R +G
Sbjct: 128 CKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGQFKSR-KEREAELGA 185
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
K++ V++KN E +D+E LK F KFG + VK++ DE+GKSKGFGF+ F ++
Sbjct: 186 RAKEFPN--VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A+KA+ EMNG+ + +V A+ K+ F ++K + + ++V NL
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDD 303
Query: 239 NINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
I++ + F+ FGTITS+ ++ + K GF+ F P+ AT AV+ MNG + +KPL
Sbjct: 304 GIDDERLWKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Query: 295 KVTLSGTK 302
V L+ K
Sbjct: 364 YVALAQRK 371
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 85/279 (30%), Positives = 133/279 (47%), Gaps = 37/279 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F G + +RV R+ S +A + F P +A+
Sbjct: 8 YPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRGSSNYAYVNFQHPKDAEH 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KP+ I + + P R + VG +FVKNL ++++ + L
Sbjct: 68 ALHTMNFDVIKGKPLRIMWSQRDPSLRKRGVG---------NIFVKNLDKSINNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
FGNI+ K+V DENG SKG+GF+ F +++AAE+AI +MNG ++ FV
Sbjct: 119 VSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGQFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K FP V ++ N ++++ ++LF +FG S +++
Sbjct: 178 EREAELGARAKEFPNV-------------YIKNFGEDMDDERLKDLFGKFGPALSVKVMT 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
D K GF+ F + A AV MNG K + V
Sbjct: 225 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTM 284
++V +L ++ + E F+ G I S + D + ++ F PK A HA+ TM
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRGSSNYAYVNFQHPKDAEHALHTM 72
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N V K KPL++ S P +
Sbjct: 73 NFDVIKGKPLRIMWSQRDPSL 93
>gi|348529271|ref|XP_003452137.1| PREDICTED: polyadenylate-binding protein 1-like [Oreochromis
niloticus]
Length = 635
Score = 147 bits (372), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 95/311 (30%), Positives = 167/311 (53%), Gaps = 29/311 (9%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KG+ L W + D R + N + + NL+ S+DN+AL + F FG +
Sbjct: 78 KGRPLRIMWSQ---RDPSLRKSGVGN-------IFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V ++N S+G+ + F T A++A +MNG L+ + V + + + +R +G
Sbjct: 128 CKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSR-KEREAELGA 185
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
+++ V++KN E +D+E+LK F K+G + ++++ DE+GKSKGFGF+ F ++
Sbjct: 186 RAREFTN--VYIKNFGEDMDDEKLKELFSKYGPALSIRVMTDESGKSKGFGFVSFERHED 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLA--------EIVPGKKVFPKVKPPLLQPARKNKIFVAN 235
A+KA+ EMNG+ + +V A E+ K+ F ++K + + ++V N
Sbjct: 244 AQKAVDEMNGKELNGRQVYVGRAQKKGERQNEL---KRKFEQMKQDRMTRYQGVNLYVKN 300
Query: 236 LPSNINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKS 291
L +++ + F+ FGTITS+ ++ + K GF+ F P+ AT AV+ MNG + +
Sbjct: 301 LDDGLDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 292 KPLKVTLSGTK 302
KPL V L+ K
Sbjct: 361 KPLYVALAQRK 371
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 84/263 (31%), Positives = 138/263 (52%), Gaps = 25/263 (9%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I +P+ I + + P R VG +F+KNL +++D + L
Sbjct: 68 ALDTMNFDVIKGRPLRIMWSQRDPSLRKSGVG---------NIFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVP 210
F FGNI+ K+V DENG SKG+GF+ F +++AAE+AI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFV------- 170
Query: 211 GK-KVFPKVKPPLLQPARK-NKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----- 263
G+ K + + L AR+ +++ N ++++ + +ELF+++G S +++D
Sbjct: 171 GRFKSRKEREAELGARAREFTNVYIKNFGEDMDDEKLKELFSKYGPALSIRVMTDESGKS 230
Query: 264 KHIGFIEFIMPKHATHAVSTMNG 286
K GF+ F + A AV MNG
Sbjct: 231 KGFGFVSFERHEDAQKAVDEMNG 253
>gi|326933139|ref|XP_003212666.1| PREDICTED: polyadenylate-binding protein 4-like [Meleagris
gallopavo]
Length = 636
Score = 147 bits (372), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 91/273 (33%), Positives = 152/273 (55%), Gaps = 13/273 (4%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+DN+AL + F FG + +V ++N S+G+A + F T A +A +MNG
Sbjct: 109 IKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGM 167
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ + V + + + +R +G + K++ V++KN + +D+E LK F K+G +
Sbjct: 168 LLNDRKVFVGRFKSRK-EREAELGAKAKEF--TNVYIKNFGDDMDDERLKELFSKYGKTL 224
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKK 213
VK++ D GKSKGFGF+ F ++ A KA+ EMNG+ I FV A+ K+
Sbjct: 225 SVKVMTDPTGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKR 284
Query: 214 VFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLV----SDKHIGFI 269
F ++K + + +++ NL I++ + + F+ FG+ITS+ ++ K GF+
Sbjct: 285 RFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFV 344
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F P+ AT AV+ MNG + SKPL V L+ K
Sbjct: 345 CFSSPEEATKAVTEMNGRIVGSKPLYVALAQRK 377
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L++ NL+ ++D++ L EF FG++ +V ++ S+GF + F++P EA KA
Sbjct: 297 YQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKA 355
Query: 92 RVEMNGHLIGSKPVIITFVELK 113
EMNG ++GSKP+ + + K
Sbjct: 356 VTEMNGRIVGSKPLYVALAQRK 377
>gi|335293857|ref|XP_003357073.1| PREDICTED: polyadenylate-binding protein 4-like [Sus scrofa]
Length = 370
Score = 147 bits (371), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 88/270 (32%), Positives = 147/270 (54%), Gaps = 13/270 (4%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+DN+ L F FG + +V + + SRG+A + F A +A EMNG
Sbjct: 102 IKNLDKSIDNKTLYEHFSAFGKILSSKVMSD-DQGSRGYAFVHFQNQIAADRAIEEMNGA 160
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ + FV ++ + + K + V++KN + +D+E LK F K+G +
Sbjct: 161 LLKDCRL---FVGRFKNRKDREAELQNKANEFTNVYIKNFGDDMDDERLKEVFSKYGKTL 217
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKK 213
VK++RD +GKSKGFGF+ F S++AA+KA+ EMNG+ I FV A+ K+
Sbjct: 218 SVKVMRDSSGKSKGFGFVSFDSHEAAKKAVEEMNGKDINGQLLFVGRAQKKAERQAELKQ 277
Query: 214 VFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGFI 269
+F ++K + + K+++ NL I++ + F+ FG+I+ ++ + K G I
Sbjct: 278 MFEQLKRERFRRCQGVKLYIKNLDETIDDEKLRREFSSFGSISRVKVMQEEGRSKGFGLI 337
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299
F P+ AT A++ MNG + SKPL + L+
Sbjct: 338 CFSSPEEATKAMTEMNGRILGSKPLNIALA 367
Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 74/263 (28%), Positives = 128/263 (48%), Gaps = 25/263 (9%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y++ L+V +L V L +F G + +R+ R+ S G+A + F A+A+K
Sbjct: 7 YRQASLYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLQLADAQK 66
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN LI K + + + + R +G VF+KNL +++D + L H
Sbjct: 67 ALDTMNFDLIKGKSIRLMWSQRDAYLRKSGIG---------NVFIKNLDKSIDNKTLYEH 117
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVP 210
F FG I+ K++ D+ G S+G+ F+ F + AA++AI EMNG +++ FV
Sbjct: 118 FSAFGKILSSKVMSDDQG-SRGYAFVHFQNQIAADRAIEEMNGALLKDCRLFV------- 169
Query: 211 GKKVFPKVKPPLLQPARK--NKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----- 263
G+ K + LQ +++ N ++++ +E+F+++G S ++ D
Sbjct: 170 GRFKNRKDREAELQNKANEFTNVYIKNFGDDMDDERLKEVFSKYGKTLSVKVMRDSSGKS 229
Query: 264 KHIGFIEFIMPKHATHAVSTMNG 286
K GF+ F + A AV MNG
Sbjct: 230 KGFGFVSFDSHEAAKKAVEEMNG 252
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 112/196 (57%), Gaps = 13/196 (6%)
Query: 23 RSNKENNKVYKENE---LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAI 79
R ++E K NE +++ N +D++ L F K+G V+V R+ + +S+GF
Sbjct: 175 RKDREAELQNKANEFTNVYIKNFGDDMDDERLKEVFSKYGKTLSVKVMRDSSGKSKGFGF 234
Query: 80 IVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKD-------- 131
+ F++ AKKA EMNG I + + + + K +R + +Q K++
Sbjct: 235 VSFDSHEAAKKAVEEMNGKDINGQLLFVGRAQ-KKAERQAELKQMFEQLKRERFRRCQGV 293
Query: 132 KVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEM 191
K+++KNL ET+D+E+L+ F FG+I VK++++E G+SKGFG I F S + A KA+ EM
Sbjct: 294 KLYIKNLDETIDDEKLRREFSSFGSISRVKVMQEE-GRSKGFGLICFSSPEEATKAMTEM 352
Query: 192 NGRMIQHNSTFVSLAE 207
NGR++ ++LA+
Sbjct: 353 NGRILGSKPLNIALAQ 368
>gi|119596295|gb|EAW75889.1| hCG2019100, isoform CRA_c [Homo sapiens]
Length = 433
Score = 147 bits (371), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 94/308 (30%), Positives = 166/308 (53%), Gaps = 23/308 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KG+ + W + D G R + N + + NLE S+DN+AL + F FG +
Sbjct: 78 KGQPIRIMWSQ---RDPGLRKSGVGN-------IFIKNLEDSIDNKALYDTFSTFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+VA +++ SRGF + F T A++A MNG L+ + V + + + +R +G
Sbjct: 128 CKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRR-EREAELGA 185
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
++ ++VKNL VDE+ L+ F +FG ++ VK++RD +G S+ FGF+ F ++
Sbjct: 186 RALEFTN--IYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEE 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAEIV-----PGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A+KA++ MNG+ + + A+ K+ F ++K L+ + ++V NL
Sbjct: 244 AQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDD 303
Query: 239 NINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
+I++ + + F+ +G ITS+ ++++ K GF+ F P+ AT AV+ MNG + +KPL
Sbjct: 304 SIDDDKLRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPL 363
Query: 295 KVTLSGTK 302
V L+ K
Sbjct: 364 YVALAQRK 371
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 81/261 (31%), Positives = 134/261 (51%), Gaps = 21/261 (8%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F G + +RV R+ S G+A I F PA+A++
Sbjct: 8 YPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN ++ +P+ I + + PG R VG +F+KNL +++D + L
Sbjct: 68 ALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVG---------NIFIKNLEDSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVP 210
F FGNI+ K+ DE+G S+GFGF+ F +++AA++AI MNG ++ FV
Sbjct: 119 FSTFGNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFV--GHFKS 175
Query: 211 GKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KH 265
++ ++ L+ I+V NLP +++ ++LF++FG + S ++ D +
Sbjct: 176 RREREAELGARALE---FTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRC 232
Query: 266 IGFIEFIMPKHATHAVSTMNG 286
GF+ F + A AV MNG
Sbjct: 233 FGFVNFEKHEEAQKAVVHMNG 253
>gi|2665654|gb|AAB88449.1| polyadenylate binding protein [Petromyzon marinus]
Length = 630
Score = 147 bits (371), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 99/309 (32%), Positives = 167/309 (54%), Gaps = 24/309 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK + W + D RS N + + NL+ S+DN+AL + F FG +
Sbjct: 78 KGKPIRIMWSQ--RDPSLRRSGVGN--------IFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V ++N S+G+ + F T A KA +MNG L+ + V + + + +R G
Sbjct: 128 CKVVCDENG-SKGYGFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSR-KEREAEFGA 185
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKF-GNIIEVKIVRDENGKSKGFGFIQFFSYK 182
+ +++ V++KN + +D+E L+ +F ++ G + VK++ DE GKSKGFGF+ F ++
Sbjct: 186 KAREFTN--VYIKNFGDDMDDERLREYFEQYVGKTLSVKVMMDEGGKSKGFGFVSFERHE 243
Query: 183 AAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNK-----IFVANLP 237
A+KA+ EMN + + + +V A+ ++ K K +L+ R +K ++V NL
Sbjct: 244 DAQKAVDEMNTKELNGRAIYVGRAQKKAERQTELKRKFEMLKQERMSKYQGVNLYVKNLD 303
Query: 238 SNINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKP 293
NIN+ + F+ FGTITS+ ++ + + GF+ F P+ AT AV+ MNG + SKP
Sbjct: 304 DNINDERLWKEFSPFGTITSAKVMMEEGRSRGFGFVCFSSPEEATKAVTEMNGRIIGSKP 363
Query: 294 LKVTLSGTK 302
L V L+ K
Sbjct: 364 LYVALAQRK 372
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 79/262 (30%), Positives = 129/262 (49%), Gaps = 24/262 (9%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L++ +L P V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYIGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN ++ KP+ I + + P R VG +F+KNL +++D + L
Sbjct: 68 ALDTMNFDVVKGKPIRIMWSQRDPSLRRSGVG---------NIFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVP 210
F FGNI+ K+V DENG SKG+GF+ F + +AA+KAI +MNG ++ FV +
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYGFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 211 GKKVFPKVKPPLLQPARK-NKIFVANLPSNINNSEFEELFARF-GTITSSSLVSD----- 263
++ K AR+ +++ N ++++ E F ++ G S ++ D
Sbjct: 178 EREAEFGAK------AREFTNVYIKNFGDDMDDERLREYFEQYVGKTLSVKVMMDEGGKS 231
Query: 264 KHIGFIEFIMPKHATHAVSTMN 285
K GF+ F + A AV MN
Sbjct: 232 KGFGFVSFERHEDAQKAVDEMN 253
>gi|197097606|ref|NP_001126097.1| polyadenylate-binding protein 1 [Pongo abelii]
gi|55730342|emb|CAH91893.1| hypothetical protein [Pongo abelii]
Length = 636
Score = 147 bits (371), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 99/308 (32%), Positives = 164/308 (53%), Gaps = 23/308 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK + W + D R + N + + NL+ S+D +AL + F FG +
Sbjct: 78 KGKPVRIMWSQ---RDPSLRKSGVGN-------IFIKNLDKSIDIKALYDTFSAFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V ++N S+G+ + F T A++A +MNG L+ + V + + + +R +G
Sbjct: 128 CKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR-KEREAELGA 185
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
K++ V++KN E +D+E LK F KFG + VK++ DE+GKSKGFGF+ F ++
Sbjct: 186 RAKEFTN--VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A+KA+ EMNG+ + +V A+ K+ F ++K + + ++V NL
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 239 NINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
I++ + F+ FGTITS+ ++ + K GF+ F P+ AT AV+ MNG V +KPL
Sbjct: 304 GIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRVVATKPL 363
Query: 295 KVTLSGTK 302
V L+ K
Sbjct: 364 YVALAQRK 371
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 87/279 (31%), Positives = 134/279 (48%), Gaps = 37/279 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KPV I + + P R VG +F+KNL +++D + L
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVG---------NIFIKNLDKSIDIKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+GF+ F + +AAE+AI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N ++++ ++LF +FG S +++
Sbjct: 178 EREAELGARAKEF-------------TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMT 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
D K GF+ F + A AV MNG K + V
Sbjct: 225 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>gi|426374960|ref|XP_004054321.1| PREDICTED: polyadenylate-binding protein 3 [Gorilla gorilla
gorilla]
Length = 631
Score = 147 bits (371), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 99/308 (32%), Positives = 163/308 (52%), Gaps = 23/308 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK L W + D R N + V NL+ S++N+AL + FG +
Sbjct: 78 KGKPLRIMWSQ---RDPSLRKRGVGN-------IFVKNLDKSINNKALYDTVSAFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V ++N S+G+ + F T A++A +MNG L+ + V + + + +R +G
Sbjct: 128 CKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGQFKSR-KEREAELGA 185
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
K++ V++KN E +D+E LK F KFG + VK++ DE+GKSKGFGF+ F ++
Sbjct: 186 RAKEFPN--VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A+KA+ EMNG+ + +V A+ K+ F ++K + + ++V NL
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDD 303
Query: 239 NINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
I++ + F+ FGTITS+ ++ + K GF+ F P+ AT AV+ MNG + +KPL
Sbjct: 304 GIDDERLWKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Query: 295 KVTLSGTK 302
V L+ K
Sbjct: 364 YVALAQRK 371
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 85/279 (30%), Positives = 133/279 (47%), Gaps = 37/279 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F G + +RV R+ S +A + F P +A+
Sbjct: 8 YPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRGSSNYAYVNFQHPKDAEH 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KP+ I + + P R + VG +FVKNL ++++ + L
Sbjct: 68 ALHTMNFDVIKGKPLRIMWSQRDPSLRKRGVG---------NIFVKNLDKSINNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
FGNI+ K+V DENG SKG+GF+ F +++AAE+AI +MNG ++ FV
Sbjct: 119 VSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGQFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K FP V ++ N ++++ ++LF +FG S +++
Sbjct: 178 EREAELGARAKEFPNV-------------YIKNFGEDMDDERLKDLFGKFGPALSVKVMT 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
D K GF+ F + A AV MNG K + V
Sbjct: 225 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTM 284
++V +L ++ + E F+ G I S + D + ++ F PK A HA+ TM
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRGSSNYAYVNFQHPKDAEHALHTM 72
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N V K KPL++ S P +
Sbjct: 73 NFDVIKGKPLRIMWSQRDPSL 93
>gi|395526571|ref|XP_003765434.1| PREDICTED: polyadenylate-binding protein 4 [Sarcophilus harrisii]
Length = 630
Score = 147 bits (371), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 98/308 (31%), Positives = 163/308 (52%), Gaps = 23/308 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK + W + D R + N + + NL+ S+DN+AL + F FG +
Sbjct: 78 KGKPIRIMWSQ---RDPSLRKSGVGN-------VFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V ++N S+G+A + F T A +A +MNG L+ + V + + + +R +G
Sbjct: 128 CKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSR-KEREAELGA 185
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
+ K++ V++KN + +D+E LK F K+G + VK++ D +GKSKGFGF+ F ++
Sbjct: 186 KAKEFTN--VYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDSSGKSKGFGFVSFEKHED 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A KA+ EMNG+ I FV A+ K+ F ++K + + +++ NL
Sbjct: 244 ANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 239 NINNSEFEELFARFGTITSSSLV----SDKHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
I++ + + F+ FG+ITS+ ++ K GF+ F P AT AV+ MNG + SKPL
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPDEATKAVTEMNGRIVGSKPL 363
Query: 295 KVTLSGTK 302
V L+ K
Sbjct: 364 YVALAQRK 371
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 82/269 (30%), Positives = 129/269 (47%), Gaps = 37/269 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KP+ I + + P R VG VF+KNL +++D + L
Sbjct: 68 ALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+ F+ F + AA++AI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N ++++ +ELF+++G S +++
Sbjct: 178 EREAELGAKAKEF-------------TNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMT 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNG 286
D K GF+ F + A AV MNG
Sbjct: 225 DSSGKSKGFGFVSFEKHEDANKAVEEMNG 253
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITS----SSLVSDKHIGF--IEFIMPKHATHAVSTM 284
++V +L S++ + E F+ G + S +++ + +G+ + F P A A+ TM
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N V K KP+++ S P +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSL 93
>gi|194044632|ref|XP_001927442.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Sus scrofa]
Length = 610
Score = 147 bits (371), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 98/311 (31%), Positives = 165/311 (53%), Gaps = 29/311 (9%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KG+ + W + D G R + N + + NLE S+DN+AL + F FG +
Sbjct: 78 KGQPIRIMWSQ---RDPGLRKSGVGN-------VFIKNLEDSIDNKALYDTFSTFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V + + SRGF + F T A+ A MNG L+ + V + + + +R +G
Sbjct: 128 CKVVCDDHG-SRGFGFVHFETHEAAQNAIRTMNGMLLNDRKVFVGHFKSR-REREAELGA 185
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
++ ++VKNL VDE L+ F +FG I+ VK++RD++G S+GFGF+ F ++
Sbjct: 186 RALEFTN--IYVKNLHVDVDERCLQDLFSQFGKILSVKVMRDDSGHSRGFGFVNFEKHED 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLA--------EIVPGKKVFPKVKPPLLQPARKNKIFVAN 235
A+KA+ +MNG+ + +V A E+ K+ F ++K L + ++V N
Sbjct: 244 AQKAVTDMNGKEVSGRLLYVGRAQKRVERQNEL---KRRFEQMKQDRLTRYQGVNLYVKN 300
Query: 236 LPSNINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKS 291
L +I++ + + FA +G ITS+ ++++ K GF+ F P+ AT AV+ MNG + +
Sbjct: 301 LDDSIDDEKLRKEFAPYGMITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGT 360
Query: 292 KPLKVTLSGTK 302
KPL V L+ K
Sbjct: 361 KPLYVALAQRK 371
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 87/279 (31%), Positives = 136/279 (48%), Gaps = 37/279 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F G + +RV R+ S G+A I F PA+A++
Sbjct: 8 YPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I +P+ I + + PG R VG VF+KNL +++D + L
Sbjct: 68 ALDTMNFEVIKGQPIRIMWSQRDPGLRKSGVG---------NVFIKNLEDSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V D++G S+GFGF+ F +++AA+ AI MNG ++ FV
Sbjct: 119 FSTFGNILSCKVVCDDHG-SRGFGFVHFETHEAAQNAIRTMNGMLLNDRKVFVGHFKSRR 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ G + I+V NL +++ ++LF++FG I S ++
Sbjct: 178 EREAEL--GARAL-----------EFTNIYVKNLHVDVDERCLQDLFSQFGKILSVKVMR 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
D + GF+ F + A AV+ MNG + L V
Sbjct: 225 DDSGHSRGFGFVNFEKHEDAQKAVTDMNGKEVSGRLLYV 263
>gi|432881580|ref|XP_004073850.1| PREDICTED: polyadenylate-binding protein 1-like [Oryzias latipes]
Length = 631
Score = 147 bits (371), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 89/275 (32%), Positives = 155/275 (56%), Gaps = 13/275 (4%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S+DN+AL + F FG + +V ++N SRG+ + F T A++A +MN
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SRGYGFVHFETHDAAERAIEKMN 159
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G L+ + V + + + +R +G +++ V++KN E +D+E+LK F KFGN
Sbjct: 160 GMLLNDRKVFVGRFKSR-KEREAELGARAREFTN--VYIKNFGEDMDDEKLKEIFSKFGN 216
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPG 211
V+++ DE+G +GFGF+ F +++ A+KA+ EMNG+ + FV A+ +
Sbjct: 217 ATSVRVMTDESGGGRGFGFVSFENHEDAQKAVDEMNGKELNGRIMFVGRAQKKMERQMEL 276
Query: 212 KKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIG 267
K+ F ++K + ++V NL I++ + F+ FG+ITS+ ++ + K G
Sbjct: 277 KRRFEQMKQDRTTRYQGVNLYVKNLDDGIDDERLRKEFSPFGSITSAKVMMEGGRSKGFG 336
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F+ F P+ AT AV+ MNG + +KPL V L+ K
Sbjct: 337 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 371
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 83/263 (31%), Positives = 137/263 (52%), Gaps = 25/263 (9%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPIASLYVGDLHQDVTEAMLYEKFSPAGAIVSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I +PV I + + P R VG +F+KNL +++D + L
Sbjct: 68 ALDTMNFDVIKGQPVRIMWSQRDPSLRKSGVG---------NIFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVP 210
F FGNI+ K+V DENG S+G+GF+ F ++ AAE+AI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SRGYGFVHFETHDAAERAIEKMNGMLLNDRKVFV------- 170
Query: 211 GK-KVFPKVKPPLLQPARK-NKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----- 263
G+ K + + L AR+ +++ N ++++ + +E+F++FG TS +++D
Sbjct: 171 GRFKSRKEREAELGARAREFTNVYIKNFGEDMDDEKLKEIFSKFGNATSVRVMTDESGGG 230
Query: 264 KHIGFIEFIMPKHATHAVSTMNG 286
+ GF+ F + A AV MNG
Sbjct: 231 RGFGFVSFENHEDAQKAVDEMNG 253
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L+V NL+ +D++ L EF FG++ +V + S+GF + F++P EA KA
Sbjct: 291 YQGVNLYVKNLDDGIDDERLRKEFSPFGSITSAKVMM-EGGRSKGFGFVCFSSPEEATKA 349
Query: 92 RVEMNGHLIGSKPVIITFVELK 113
EMNG ++ +KP+ + + K
Sbjct: 350 VTEMNGRIVATKPLYVALAQRK 371
>gi|361128049|gb|EHL00002.1| putative Polyadenylate-binding protein, cytoplasmic and nuclear
[Glarea lozoyensis 74030]
Length = 783
Score = 147 bits (371), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 92/270 (34%), Positives = 138/270 (51%), Gaps = 27/270 (10%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+PSV L F + G++ +RV R+ S G+A + +NT + +KA E+
Sbjct: 64 LYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTTDGEKALEEL 123
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI +P I + + P R G VF+KNL +D + L F FG
Sbjct: 124 NYTLIKGRPCRIMWSQRDPALRKTGQG---------NVFIKNLDTAIDNKALHDTFAAFG 174
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKV- 214
NI+ K+ +DE+G SKG+GF+ + + +AA +AI +NG ++ FV +P K
Sbjct: 175 NILSCKVAQDESGASKGYGFVHYETDEAASQAIKHVNGMLLNEKKVFV--GHHIPKKDRQ 232
Query: 215 --FPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHI 266
F ++K A I+V N+P + EF ELF +FG +TS+SL D +
Sbjct: 233 SKFEEMK------ANFTNIYVKNIPVEATDEEFRELFEKFGDVTSASLARDQDTGKSRGF 286
Query: 267 GFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
GF+ FI +HA AV +NG FK + L V
Sbjct: 287 GFVNFINHEHAATAVDELNGKDFKGQDLYV 316
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 90/360 (25%), Positives = 160/360 (44%), Gaps = 80/360 (22%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KG+ W + D R + N + + NL+ ++DN+AL + F FG +
Sbjct: 129 KGRPCRIMWSQ---RDPALRKTGQGN-------VFIKNLDTAIDNKALHDTFAAFGNILS 178
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+VA++++ S+G+ + + T A +A +NG L+ K V + K ++SK
Sbjct: 179 CKVAQDESGASKGYGFVHYETDEAASQAIKHVNGMLLNEKKVFVGHHIPKKDRQSK---F 235
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDEN-GKSKGFGFIQFFSYK 182
EE + ++VKN+ +EE + F KFG++ + RD++ GKS+GFGF+ F +++
Sbjct: 236 EEMKANFTNIYVKNIPVEATDEEFRELFEKFGDVTSASLARDQDTGKSRGFGFVNFINHE 295
Query: 183 AAEKAIIEMNGRMIQHNSTFVSLA--------EIVPGKKVFPKVKPPLLQPARKNK---I 231
A A+ E+NG+ + +V A E+ +K + + ++ A K + +
Sbjct: 296 HAATAVDELNGKDFKGQDLYVGRAQKKHEREEEL---RKSYEAAR---IEKASKYQGVNL 349
Query: 232 FVANLPSNINNSEFEELFARFGTITSSSLVSD---------------------------- 263
+V NL ++++ + ELF FG ITS+ ++ D
Sbjct: 350 YVKNLDDDVDDEKLRELFTPFGAITSAKVMRDSAAETAEAEKKEEEKNKENKKEGDAEEG 409
Query: 264 ---------------------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
K GF+ F P AT A++ MN ++ KPL V L+ K
Sbjct: 410 EKADGEKKEAPKSEKRTVGKSKGFGFVCFSNPDEATKAIADMNQNMVNGKPLYVALAQRK 469
>gi|395745189|ref|XP_002824146.2| PREDICTED: polyadenylate-binding protein 1-like isoform 2 [Pongo
abelii]
Length = 636
Score = 147 bits (370), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 98/308 (31%), Positives = 166/308 (53%), Gaps = 23/308 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK + W + D R + N + V NL+ S++N+AL + FG +
Sbjct: 78 KGKPVRIMWSQ---HDPSLRKSGVGN-------IFVKNLDKSINNKALYDTVSAFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V ++N S+G+ + F T A++A +MNG L+ + V + + + +R +G
Sbjct: 128 CKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSR-KEREAELGA 185
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
+ K++ V++KN E +D+E LK F KFG + VK++ DE+GKSKGFGF+ F ++
Sbjct: 186 KAKEFPN--VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFEKHED 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A+KA+ EMNG+ + +V A+ K+ F ++K + + ++V NL
Sbjct: 244 AQKAVDEMNGKELSGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNLDD 303
Query: 239 NINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
+I++ + F+ FGTITS+ ++ + K GF+ F P+ AT AV+ MNG + +KPL
Sbjct: 304 DIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Query: 295 KVTLSGTK 302
V L+ K
Sbjct: 364 YVALAQRK 371
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 86/279 (30%), Positives = 132/279 (47%), Gaps = 37/279 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F G + +RV R+ S +A + F P +A+
Sbjct: 8 YPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRRSSNYAYVNFQHPKDAEH 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KPV I + + P R VG +FVKNL ++++ + L
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQHDPSLRKSGVG---------NIFVKNLDKSINNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
FGNI+ K+V DENG SKG+GF+ F +++AAE+AI +MNG ++ FV
Sbjct: 119 VSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K FP V ++ N ++++ ++LF +FG S +++
Sbjct: 178 EREAELGAKAKEFPNV-------------YIKNFGEDMDDERLKDLFGKFGPALSVKVMT 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
D K GF+ F + A AV MNG K + V
Sbjct: 225 DESGKSKGFGFVSFEKHEDAQKAVDEMNGKELSGKQIYV 263
Score = 42.4 bits (98), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTM 284
++V +L ++ + E F+ G I S + D + ++ F PK A HA+ TM
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRRSSNYAYVNFQHPKDAEHALDTM 72
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N V K KP+++ S P +
Sbjct: 73 NFDVIKGKPVRIMWSQHDPSL 93
>gi|196008415|ref|XP_002114073.1| hypothetical protein TRIADDRAFT_27786 [Trichoplax adhaerens]
gi|190583092|gb|EDV23163.1| hypothetical protein TRIADDRAFT_27786 [Trichoplax adhaerens]
Length = 622
Score = 147 bits (370), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 84/277 (30%), Positives = 158/277 (57%), Gaps = 15/277 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NLE +DN+A+ + F FG + ++A ++N S+G+A + F T A +A ++N
Sbjct: 109 IFIKNLEKDIDNKAIYDTFSAFGNILSCKIALDENGNSKGYAFVHFETQEAANRAIEKVN 168
Query: 97 GHLIGSKPVIIT-FVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
G L+ K V + F+ K +R + +G +Y ++VKN + + ++E + F + G
Sbjct: 169 GMLLSGKKVFVGHFMSRK--ERMEKIGNLAAKYTN--LYVKNFRDDISDDEFRDLFEQCG 224
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVP 210
I+ ++RD++GKS+GFGF+ + +++AA+KA+ +N + +V+ A+
Sbjct: 225 KIVSCVVMRDDSGKSRGFGFVSYETHEAAQKAVETLNEKEFDLRRMYVARAQKKSERSAL 284
Query: 211 GKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KH 265
++ + + K +++ + ++V NL I++++ + FA FGTITS+ ++SD +
Sbjct: 285 LRRQYEQKKQEMMKRFQGVNLYVKNLDDVIDDAKLRQEFANFGTITSAKVMSDEKGISRG 344
Query: 266 IGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ F P+ AT AV+ MNG + SKPL V L+ K
Sbjct: 345 FGFVCFSSPEEATKAVTEMNGRIIISKPLYVALAQRK 381
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 79/272 (29%), Positives = 132/272 (48%), Gaps = 20/272 (7%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L P V+ L +F G + +RV R+ S G+A + F P +A++A +
Sbjct: 21 LYVGDLAPDVNEAQLYEKFNSTGPISSIRVCRDAITRRSLGYAYVNFQQPNDAERALDTL 80
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N + KP I + + P R VG +F+KNL + +D + + F FG
Sbjct: 81 NFDPVNGKPCRIMWSQRDPSLRRSGVG---------NIFIKNLEKDIDNKAIYDTFSAFG 131
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ KI DENG SKG+ F+ F + +AA +AI ++NG ++ FV + K+
Sbjct: 132 NILSCKIALDENGNSKGYAFVHFETQEAANRAIEKVNGMLLSGKKVFV--GHFMSRKERM 189
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIE 270
K+ A+ ++V N +I++ EF +LF + G I S ++ D + GF+
Sbjct: 190 EKIGNL---AAKYTNLYVKNFRDDISDDEFRDLFEQCGKIVSCVVMRDDSGKSRGFGFVS 246
Query: 271 FIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
+ + A AV T+N F + + V + K
Sbjct: 247 YETHEAAQKAVETLNEKEFDLRRMYVARAQKK 278
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 99/193 (51%), Gaps = 9/193 (4%)
Query: 23 RSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVF 82
R K N K L+V N + + + F++ G + V R+ + +SRGF + +
Sbjct: 188 RMEKIGNLAAKYTNLYVKNFRDDISDDEFRDLFEQCGKIVSCVVMRDDSGKSRGFGFVSY 247
Query: 83 NTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKD--------KVF 134
T A+KA +N + + + + K +RS + + +Q K++ ++
Sbjct: 248 ETHEAAQKAVETLNEKEFDLRRMYVARAQ-KKSERSALLRRQYEQKKQEMMKRFQGVNLY 306
Query: 135 VKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGR 194
VKNL + +D+ +L+ F FG I K++ DE G S+GFGF+ F S + A KA+ EMNGR
Sbjct: 307 VKNLDDVIDDAKLRQEFANFGTITSAKVMSDEKGISRGFGFVCFSSPEEATKAVTEMNGR 366
Query: 195 MIQHNSTFVSLAE 207
+I +V+LA+
Sbjct: 367 IIISKPLYVALAQ 379
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 50/83 (60%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L+V NL+ +D+ L EF FGT+ +V ++ SRGF + F++P EA KA EMN
Sbjct: 305 LYVKNLDDVIDDAKLRQEFANFGTITSAKVMSDEKGISRGFGFVCFSSPEEATKAVTEMN 364
Query: 97 GHLIGSKPVIITFVELKPGQRSK 119
G +I SKP+ + + K ++++
Sbjct: 365 GRIIISKPLYVALAQRKEDRKAQ 387
>gi|332374002|gb|AEE62142.1| unknown [Dendroctonus ponderosae]
Length = 634
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 96/283 (33%), Positives = 157/283 (55%), Gaps = 23/283 (8%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+DN+A+ + F FG + +VA+++N S+G+ + F T A K+ ++NG
Sbjct: 103 IKNLDRSIDNKAMYDTFSAFGNILSCKVAQDENGTSKGYGFVHFETEEAANKSIEKVNGM 162
Query: 99 LIGSKPVII-TFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNI 157
L+ K V + F+ K +R K +G + K + V+VKN E + EE+L++ F KFG I
Sbjct: 163 LLNGKKVYVGRFIPRK--EREKELGEKAKLFTN--VYVKNFGEDLSEEQLRNMFEKFGKI 218
Query: 158 IEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGR-MIQHNSTFVSLAEIVPGKKVFP 216
K++ ++GKSKGFGF+ F S +AAE A+ +NG+ +++ +V A+ ++
Sbjct: 219 TSYKVMSKDDGKSKGFGFVAFESPEAAETAVDALNGKELVEGKPLYVGRAQKKAERQQEL 278
Query: 217 KVKPPLLQPARKNK-----IFVANLPSNINNSEFEELFARFGTITSSSLV---------- 261
K + L+ R N+ ++V NL I++ + FA FGTITS+ ++
Sbjct: 279 KRRFEALKMERLNRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMIEENKTESFI 338
Query: 262 --SDKHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
K GF+ F P+ AT AV+ MNG + SKPL V L+ K
Sbjct: 339 TTRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRK 381
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 85/274 (31%), Positives = 139/274 (50%), Gaps = 25/274 (9%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L + L ++F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHSDITEAMLFDKFSSAGPVLSIRVCRDLITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN LI +P+ I + + P R VG VF+KNL ++D + +
Sbjct: 68 ALDTMNFDLIRGRPIRIMWSQRDPSLRKSGVG---------NVFIKNLDRSIDNKAMYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVP 210
F FGNI+ K+ +DENG SKG+GF+ F + +AA K+I ++NG ++ N V + +P
Sbjct: 119 FSAFGNILSCKVAQDENGTSKGYGFVHFETEEAANKSIEKVNGMLL--NGKKVYVGRFIP 176
Query: 211 GKKVFPKV--KPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS-----D 263
K+ ++ K L ++V N +++ + +F +FG ITS ++S
Sbjct: 177 RKEREKELGEKAKLF-----TNVYVKNFGEDLSEEQLRNMFEKFGKITSYKVMSKDDGKS 231
Query: 264 KHIGFIEFIMPKHATHAVSTMNG-HVFKSKPLKV 296
K GF+ F P+ A AV +NG + + KPL V
Sbjct: 232 KGFGFVAFESPEAAETAVDALNGKELVEGKPLYV 265
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 59/186 (31%), Positives = 100/186 (53%), Gaps = 15/186 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
++V N + + L N F+KFG + +V + +S+GF + F +P A+ A +N
Sbjct: 194 VYVKNFGEDLSEEQLRNMFEKFGKITSYKVMSKDDGKSKGFGFVAFESPEAAETAVDALN 253
Query: 97 G-HLIGSKPVIITFVELKP------GQRSKPVGPEE-KQYKKDKVFVKNLVETVDEEELK 148
G L+ KP+ + + K +R + + E +Y+ ++VKNL +T+D+E L+
Sbjct: 254 GKELVEGKPLYVGRAQKKAERQQELKRRFEALKMERLNRYQGVNLYVKNLDDTIDDERLR 313
Query: 149 SHFIKFGNIIEVKIVRDEN-------GKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNST 201
F FG I K++ +EN +SKGFGF+ F S + A KA+ EMNGR++
Sbjct: 314 KEFAPFGTITSAKVMIEENKTESFITTRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPL 373
Query: 202 FVSLAE 207
+V+LA+
Sbjct: 374 YVALAQ 379
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 51/89 (57%), Gaps = 7/89 (7%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKN-------DESRGFAIIVFNT 84
Y+ L+V NL+ ++D++ L EF FGT+ +V +N S+GF + F++
Sbjct: 293 YQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMIEENKTESFITTRSKGFGFVCFSS 352
Query: 85 PAEAKKARVEMNGHLIGSKPVIITFVELK 113
P EA KA EMNG ++GSKP+ + + K
Sbjct: 353 PEEATKAVTEMNGRIVGSKPLYVALAQRK 381
>gi|224078006|ref|XP_002190593.1| PREDICTED: embryonic polyadenylate-binding protein-like
[Taeniopygia guttata]
Length = 629
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 95/308 (30%), Positives = 164/308 (53%), Gaps = 23/308 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KG+ + W + D G R + N + + NL+ S+DN+AL + F FG +
Sbjct: 78 KGRPIRIMWSQ---RDPGLRKSGVGN-------VFIKNLDDSIDNKALYDTFSAFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V ++N SRG+ + F T A +A MNG L+ + V + + + +R VG
Sbjct: 128 CKVVCDENG-SRGYGFVHFETHEAATRAIETMNGMLLNDRKVFVGHFKSR-KEREAEVGA 185
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
++ V++KN + +D++ L+ F +FG + VK++ D NG+SKGFGF+ F ++
Sbjct: 186 RAIEFTN--VYIKNFGDDMDDDRLREIFSRFGKTLSVKVMMDNNGRSKGFGFVNFEKHEE 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNK-----IFVANLPS 238
A+KA+ +MNG+ I +V A+ ++ K K ++ R N+ ++V NL
Sbjct: 244 AQKAVADMNGKEINGRLLYVGRAQKRLERQSELKRKFEQMKQERVNRYQGVNLYVKNLDD 303
Query: 239 NINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
I++ + F+ +GTITS+ ++++ K GF+ F P+ AT AV+ MNG + +KPL
Sbjct: 304 GIDDERLRKEFSPYGTITSAKVMTEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPL 363
Query: 295 KVTLSGTK 302
V L+ K
Sbjct: 364 YVALAQRK 371
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 86/279 (30%), Positives = 133/279 (47%), Gaps = 37/279 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F G + +RV R+ S G+A I F PA+A++
Sbjct: 8 YPLASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDVATRRSLGYAYINFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I +P+ I + + PG R VG VF+KNL +++D + L
Sbjct: 68 ALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVG---------NVFIKNLDDSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG S+G+GF+ F +++AA +AI MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SRGYGFVHFETHEAATRAIETMNGMLLNDRKVFVGHFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ F +++ N ++++ E+F+RFG S ++
Sbjct: 178 EREAEVGARAIEF-------------TNVYIKNFGDDMDDDRLREIFSRFGKTLSVKVMM 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
D K GF+ F + A AV+ MNG + L V
Sbjct: 225 DNNGRSKGFGFVNFEKHEEAQKAVADMNGKEINGRLLYV 263
Score = 40.8 bits (94), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGF--IEFIMPKHATHAVSTM 284
++V +L ++ + E F+ G I S + D + +G+ I F P A A+ TM
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N V K +P+++ S PG+
Sbjct: 73 NFEVIKGRPIRIMWSQRDPGL 93
>gi|297739370|emb|CBI29360.3| unnamed protein product [Vitis vinifera]
Length = 633
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 91/278 (32%), Positives = 153/278 (55%), Gaps = 22/278 (7%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+PS+DN+AL++ F FGT+ ++A + N +S+G+ + F A+ A +NG
Sbjct: 105 IKNLDPSIDNKALLDTFAAFGTVLSCKIALDNNGQSKGYGFVQFEQEEAAQNAIKRLNGM 164
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
LI K V + ++ +R++ G K V+VKNL ET +++LK+ F K+G+I
Sbjct: 165 LINDKQVYVGLF-VRHQERNRGNGSP----KFTNVYVKNLSETTTDDDLKNIFGKYGSIT 219
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNST-FVSLAEIVPGKKVFPK 217
++RD +G SK FGF+ F S +A A+ +NG + +V A+ ++ +
Sbjct: 220 SAVVMRDASGMSKCFGFVNFQSSDSAAAAVEHLNGATFNDDKVWYVGKAQRKSEREAELR 279
Query: 218 VKPPLLQPARKNK--------IFVANLPSNINNSEFEELFARFGTITSSSLVSD-----K 264
K + RKNK +++ NL ++N+ + +ELF+ FGTITS ++ D K
Sbjct: 280 AK---FEQERKNKFEKFKGTNLYLKNLDDSVNDEKLKELFSEFGTITSCKVMLDPQGLSK 336
Query: 265 HIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ F+ P+ AT A++ MNG + KPL V ++ K
Sbjct: 337 GSGFVAFLTPEEATRALNVMNGKMIGRKPLYVAVAQRK 374
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 73/273 (26%), Positives = 125/273 (45%), Gaps = 40/273 (14%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
+ L+V +L+ ++ L + F++ + +RV R++ S G+A + F +P +A
Sbjct: 10 FANASLYVGDLDTAIGEGQLYDLFQQVAPVLSIRVCRDQARRASLGYAYVNFASPQDATN 69
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A +N + KP+ I F P R VF+KNL ++D + L
Sbjct: 70 ALEHLNFTPLNGKPIRIMFSHRDPSIRKSGFA---------NVFIKNLDPSIDNKALLDT 120
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVP 210
F FG ++ KI D NG+SKG+GF+QF +AA+ AI +NG +I +V L
Sbjct: 121 FAAFGTVLSCKIALDNNGQSKGYGFVQFEQEEAAQNAIKRLNGMLINDKQVYVGL----- 175
Query: 211 GKKVFPKVKPPLLQPARKNK---------IFVANLPSNINNSEFEELFARFGTITSSSLV 261
++ +N+ ++V NL + + + +F ++G+ITS+ ++
Sbjct: 176 -----------FVRHQERNRGNGSPKFTNVYVKNLSETTTDDDLKNIFGKYGSITSAVVM 224
Query: 262 SD-----KHIGFIEFIMPKHATHAVSTMNGHVF 289
D K GF+ F A AV +NG F
Sbjct: 225 RDASGMSKCFGFVNFQSSDSAAAAVEHLNGATF 257
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 92/179 (51%), Gaps = 8/179 (4%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
++V NL + + L N F K+G++ V R+ + S+ F + F + A A +N
Sbjct: 194 VYVKNLSETTTDDDLKNIFGKYGSITSAVVMRDASGMSKCFGFVNFQSSDSAAAAVEHLN 253
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDK--------VFVKNLVETVDEEELK 148
G V + +R + + +Q +K+K +++KNL ++V++E+LK
Sbjct: 254 GATFNDDKVWYVGKAQRKSEREAELRAKFEQERKNKFEKFKGTNLYLKNLDDSVNDEKLK 313
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
F +FG I K++ D G SKG GF+ F + + A +A+ MNG+MI +V++A+
Sbjct: 314 ELFSEFGTITSCKVMLDPQGLSKGSGFVAFLTPEEATRALNVMNGKMIGRKPLYVAVAQ 372
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 46/82 (56%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
+K L++ NL+ SV+++ L F +FGT+ +V + S+G + F TP EA +A
Sbjct: 293 FKGTNLYLKNLDDSVNDEKLKELFSEFGTITSCKVMLDPQGLSKGSGFVAFLTPEEATRA 352
Query: 92 RVEMNGHLIGSKPVIITFVELK 113
MNG +IG KP+ + + K
Sbjct: 353 LNVMNGKMIGRKPLYVAVAQRK 374
>gi|47217896|emb|CAG05018.1| unnamed protein product [Tetraodon nigroviridis]
Length = 558
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 92/308 (29%), Positives = 166/308 (53%), Gaps = 23/308 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KG+ L W + D R + N + + NL+ S+DN+AL + F FG +
Sbjct: 65 KGRPLRIMWSQ---RDPSLRKSGVGN-------IFIKNLDKSIDNKALYDTFSAFGNILS 114
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V ++N S+G+ + F T A++A +MNG L+ + V + + + +R +G
Sbjct: 115 CKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRK-EREAELGA 172
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
+++ V++KN E +D+E+LK F K+G + ++++ D++GKSKGFGF+ F ++
Sbjct: 173 RAREFTN--VYIKNFGEDMDDEKLKELFSKYGPALSIRVMTDDSGKSKGFGFVSFERHED 230
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAEIVPG-----KKVFPKVKPPLLQPARKNKIFVANLPS 238
A+KA+ +MNG+ + +V A+ K+ F ++K + + ++V NL
Sbjct: 231 AQKAVDDMNGKELNGRQVYVGRAQKKGERQNELKRKFEQMKQDRMTRYQGVNLYVKNLDD 290
Query: 239 NINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
+++ + F+ FGTITS+ ++ + K GF+ F P+ AT AV+ MNG + +KPL
Sbjct: 291 GLDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 350
Query: 295 KVTLSGTK 302
V L+ K
Sbjct: 351 YVALAQRK 358
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 77/242 (31%), Positives = 129/242 (53%), Gaps = 25/242 (10%)
Query: 53 NEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVE 111
+F G + +RV R+ S G+A + F PA+A++A MN +I +P+ I + +
Sbjct: 16 QDFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGRPLRIMWSQ 75
Query: 112 LKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSK 171
P R VG +F+KNL +++D + L F FGNI+ K+V DENG SK
Sbjct: 76 RDPSLRKSGVG---------NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SK 125
Query: 172 GFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGK-KVFPKVKPPLLQPARK-N 229
G+GF+ F +++AAE+AI +MNG ++ FV G+ K + + L AR+
Sbjct: 126 GYGFVHFETHEAAERAIEKMNGMLLNDRKVFV-------GRFKSRKEREAELGARAREFT 178
Query: 230 KIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTM 284
+++ N ++++ + +ELF+++G S +++D K GF+ F + A AV M
Sbjct: 179 NVYIKNFGEDMDDEKLKELFSKYGPALSIRVMTDDSGKSKGFGFVSFERHEDAQKAVDDM 238
Query: 285 NG 286
NG
Sbjct: 239 NG 240
>gi|11610605|gb|AAG38953.1|AF132026_1 testis-specific poly(A)-binding protein [Homo sapiens]
Length = 631
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 98/308 (31%), Positives = 163/308 (52%), Gaps = 23/308 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK + W + D R + N + V NL+ S++N+AL + FG +
Sbjct: 78 KGKPVRIMWSQ---RDPSLRKSGVGN-------IFVKNLDKSINNKALYDTVSAFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
V ++N S+G+ + F T A++A +MNG L+ + V + + + +R +G
Sbjct: 128 CNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSR-KEREAELGA 185
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
K++ V++KN E +D+E LK F KFG + VK++ DE+GKSKGFGF+ F ++
Sbjct: 186 RAKEFPN--VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A+KA+ EMNG+ + +V A+ K+ F ++K + + ++V NL
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDD 303
Query: 239 NINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
I++ + F+ FGTITS+ ++ + K GF+ F P+ AT AV+ MNG + +KPL
Sbjct: 304 GIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Query: 295 KVTLSGTK 302
V L+ K
Sbjct: 364 YVALAQRK 371
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 83/279 (29%), Positives = 130/279 (46%), Gaps = 37/279 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F G + +R+ R+ S +A + F +A+
Sbjct: 8 YPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEH 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KPV I + + P R VG +FVKNL ++++ + L
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVG---------NIFVKNLDKSINNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
FGNI+ +V DENG SKG+GF+ F +++AAE+AI +MNG ++ FV
Sbjct: 119 VSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K FP V ++ N ++++ ++LF +FG S +++
Sbjct: 178 EREAELGARAKEFPNV-------------YIKNFGEDMDDERLKDLFGKFGPALSVKVMT 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
D K GF+ F + A AV MNG K + V
Sbjct: 225 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Score = 39.3 bits (90), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTM 284
++V +L ++ + E F+ G I S + D + ++ F K A HA+ TM
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDTM 72
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N V K KP+++ S P +
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSL 93
>gi|327285428|ref|XP_003227435.1| PREDICTED: polyadenylate-binding protein 4-like [Anolis
carolinensis]
Length = 616
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 98/308 (31%), Positives = 163/308 (52%), Gaps = 23/308 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK + W + D R + N + + NL+ S+DN+AL + F FG +
Sbjct: 65 KGKPIRIMWSQ---RDPSLRKSGVGN-------VFIKNLDKSIDNKALYDTFSAFGNILS 114
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V ++N S+G+A + F T A +A +MNG L+ + V + + + +R +G
Sbjct: 115 CKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSR-KEREAELGA 172
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
+ K++ V++KN + +D+E LK F K+G + VK++ D GKSKGFGF+ F ++
Sbjct: 173 KAKEF--TNVYIKNFGDDMDDERLKELFGKYGKTLSVKVMTDPTGKSKGFGFVSFEKHEE 230
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A KA+ EMNG+ I FV A+ K+ F ++K + + +++ NL
Sbjct: 231 ANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRRFEQLKQERISRYQGVNLYIKNLDD 290
Query: 239 NINNSEFEELFARFGTITSSSLV----SDKHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
I++ + + F+ FG+ITS+ ++ K GF+ F P+ AT AV+ MNG + SKPL
Sbjct: 291 TIDDEKLRKEFSPFGSITSAKVMLEEGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPL 350
Query: 295 KVTLSGTK 302
V L+ K
Sbjct: 351 YVALAQRK 358
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 76/249 (30%), Positives = 120/249 (48%), Gaps = 38/249 (15%)
Query: 52 INEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFV 110
+ E +F L +RV R+ S +A + F PA+A++A MN +I KP+ I +
Sbjct: 16 LEENPRFPVL-SIRVCRDMITRRSLFYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWS 74
Query: 111 ELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKS 170
+ P R VG VF+KNL +++D + L F FGNI+ K+V DENG S
Sbjct: 75 QRDPSLRKSGVG---------NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-S 124
Query: 171 KGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL--------AEIVPGKKVFPKVKPPL 222
KG+ F+ F + AA++AI +MNG ++ FV AE+ K F
Sbjct: 125 KGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEF------- 177
Query: 223 LQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHA 277
+++ N ++++ +ELF ++G S +++D K GF+ F + A
Sbjct: 178 ------TNVYIKNFGDDMDDERLKELFGKYGKTLSVKVMTDPTGKSKGFGFVSFEKHEEA 231
Query: 278 THAVSTMNG 286
AV MNG
Sbjct: 232 NKAVEEMNG 240
>gi|72534835|ref|NP_001026846.1| poly A binding protein, cytoplasmic 1 a [Danio rerio]
gi|71534060|gb|AAH99992.1| Poly A binding protein, cytoplasmic 1 a [Danio rerio]
Length = 634
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 86/275 (31%), Positives = 156/275 (56%), Gaps = 13/275 (4%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S+DN+AL + F FG + +V ++N S+G+ + F T A++A +MN
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMN 159
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G L+ + V + + + +R +G K++ V++KN E +D+E+LK F K+G
Sbjct: 160 GMLLNDRKVFVGRFKSR-KEREAEMGARAKEFTN--VYIKNFGEDMDDEKLKEIFCKYGP 216
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPG 211
+ ++++ D++GKSKGFGF+ F ++ A++A+ EMNG+ + +V A+
Sbjct: 217 ALSIRVMTDDSGKSKGFGFVSFERHEDAQRAVDEMNGKEMNGKQVYVGRAQKKGERQTEL 276
Query: 212 KKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIG 267
K+ F ++K + + ++V NL +++ + F+ FGTITS+ ++ + K G
Sbjct: 277 KRKFEQMKQDRMTRYQGVNLYVKNLDDGLDDERLRKEFSPFGTITSAKVMMEGGRSKGFG 336
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F+ F P+ AT AV+ MNG + +KPL V L+ K
Sbjct: 337 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 371
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 85/279 (30%), Positives = 136/279 (48%), Gaps = 37/279 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I +PV I + + P R VG +F+KNL +++D + L
Sbjct: 68 ALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVG---------NIFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+GF+ F +++AAE+AI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N ++++ + +E+F ++G S +++
Sbjct: 178 EREAEMGARAKEF-------------TNVYIKNFGEDMDDEKLKEIFCKYGPALSIRVMT 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
D K GF+ F + A AV MNG K + V
Sbjct: 225 DDSGKSKGFGFVSFERHEDAQRAVDEMNGKEMNGKQVYV 263
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L+V NL+ +D++ L EF FGT+ +V + S+GF + F++P EA KA
Sbjct: 291 YQGVNLYVKNLDDGLDDERLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKA 349
Query: 92 RVEMNGHLIGSKPVIITFVELK 113
EMNG ++ +KP+ + + K
Sbjct: 350 VTEMNGRIVATKPLYVALAQRK 371
>gi|82802761|gb|ABB92431.1| PABP3 [Aotus trivirgatus]
Length = 629
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 98/308 (31%), Positives = 165/308 (53%), Gaps = 23/308 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK + W + D R + N + V NL+ S++N+AL + FG +
Sbjct: 78 KGKPVRIMWSQ---HDPSLRKSGVGN-------IFVKNLDKSINNKALYDTVSAFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V ++N S+G+ + F T A++A +MNG L+ + V + + + +R +G
Sbjct: 128 CKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSR-KEREAELGA 185
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
+ K++ V++KN E +D+E LK F KFG + VK++ DE+GKSKGFGF+ F ++
Sbjct: 186 KAKEFPN--VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFEKHED 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A+KA+ EMNG+ + +V A+ K+ F ++K + + ++V NL
Sbjct: 244 AQKAVDEMNGKELSGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNLDD 303
Query: 239 NINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
I++ + F+ FGTITS+ ++ + K GF+ F P+ AT AV+ MNG + +KPL
Sbjct: 304 GIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Query: 295 KVTLSGTK 302
V L+ K
Sbjct: 364 YVALAQRK 371
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 86/279 (30%), Positives = 132/279 (47%), Gaps = 37/279 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F G + +RV R+ S +A + F P +A+
Sbjct: 8 YPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRRSSNYAYVNFQHPKDAEH 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KPV I + + P R VG +FVKNL ++++ + L
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQHDPSLRKSGVG---------NIFVKNLDKSINNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
FGNI+ K+V DENG SKG+GF+ F +++AAE+AI +MNG ++ FV
Sbjct: 119 VSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K FP V ++ N ++++ ++LF +FG S +++
Sbjct: 178 EREAELGAKAKEFPNV-------------YIKNFGEDMDDERLKDLFGKFGPALSVKVMT 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
D K GF+ F + A AV MNG K + V
Sbjct: 225 DESGKSKGFGFVSFEKHEDAQKAVDEMNGKELSGKQIYV 263
Score = 42.4 bits (98), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTM 284
++V +L ++ + E F+ G I S + D + ++ F PK A HA+ TM
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRRSSNYAYVNFQHPKDAEHALDTM 72
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N V K KP+++ S P +
Sbjct: 73 NFDVIKGKPVRIMWSQHDPSL 93
>gi|73909065|gb|AAH45608.1| Poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
Length = 631
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 100/309 (32%), Positives = 163/309 (52%), Gaps = 25/309 (8%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK + W + D R + N + V NL+ S++N+AL + FG +
Sbjct: 78 KGKPVRIMWSQ---RDPSLRKSGVGN-------IFVKNLDKSINNKALYDTVSAFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVII-TFVELKPGQRSKPVG 122
V ++N S+G+ + F T A++A +MNG L+ + V + F K +R +G
Sbjct: 128 CNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRK--EREAELG 184
Query: 123 PEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYK 182
K++ V++KN E +D+E LK F KFG + VK++ DE+GKSKGFGF+ F ++
Sbjct: 185 ARAKEFPN--VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 183 AAEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLP 237
A+KA+ EMNG+ + +V A+ K+ F ++K + + ++V NL
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLD 302
Query: 238 SNINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKP 293
I++ + F+ FGTITS+ ++ + K GF+ F P+ AT AV+ MNG + +KP
Sbjct: 303 DGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 362
Query: 294 LKVTLSGTK 302
L V L+ K
Sbjct: 363 LYVALAQRK 371
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 83/279 (29%), Positives = 130/279 (46%), Gaps = 37/279 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F G + +R+ R+ S +A + F +A+
Sbjct: 8 YPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEH 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KPV I + + P R VG +FVKNL ++++ + L
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVG---------NIFVKNLDKSINNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
FGNI+ +V DENG SKG+GF+ F +++AAE+AI +MNG ++ FV
Sbjct: 119 VSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K FP V ++ N ++++ ++LF +FG S +++
Sbjct: 178 EREAELGARAKEFPNV-------------YIKNFGEDMDDERLKDLFGKFGPALSVKVMT 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
D K GF+ F + A AV MNG K + V
Sbjct: 225 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Score = 39.3 bits (90), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTM 284
++V +L ++ + E F+ G I S + D + ++ F K A HA+ TM
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDTM 72
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N V K KP+++ S P +
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSL 93
>gi|82802749|gb|ABB92425.1| PABP3 [Homo sapiens]
Length = 630
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 100/309 (32%), Positives = 163/309 (52%), Gaps = 25/309 (8%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK + W + D R + N + V NL+ S++N+AL + FG +
Sbjct: 78 KGKPVRIMWSQ---RDPSLRKSGVGN-------IFVKNLDKSINNKALYDTVSAFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVII-TFVELKPGQRSKPVG 122
V ++N S+G+ + F T A++A +MNG L+ + V + F K +R +G
Sbjct: 128 CNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRK--EREAELG 184
Query: 123 PEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYK 182
K++ V++KN E +D+E LK F KFG + VK++ DE+GKSKGFGF+ F ++
Sbjct: 185 ARAKEFPN--VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 183 AAEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLP 237
A+KA+ EMNG+ + +V A+ K+ F ++K + + ++V NL
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLD 302
Query: 238 SNINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKP 293
I++ + F+ FGTITS+ ++ + K GF+ F P+ AT AV+ MNG + +KP
Sbjct: 303 DGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 362
Query: 294 LKVTLSGTK 302
L V L+ K
Sbjct: 363 LYVALAQRK 371
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 83/279 (29%), Positives = 130/279 (46%), Gaps = 37/279 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F G + +R+ R+ S +A + F +A+
Sbjct: 8 YPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEH 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KPV I + + P R VG +FVKNL ++++ + L
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVG---------NIFVKNLDKSINNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
FGNI+ +V DENG SKG+GF+ F +++AAE+AI +MNG ++ FV
Sbjct: 119 VSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K FP V ++ N ++++ ++LF +FG S +++
Sbjct: 178 EREAELGARAKEFPNV-------------YIKNFGEDMDDERLKDLFGKFGPALSVKVMT 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
D K GF+ F + A AV MNG K + V
Sbjct: 225 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Score = 39.3 bits (90), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTM 284
++V +L ++ + E F+ G I S + D + ++ F K A HA+ TM
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDTM 72
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N V K KP+++ S P +
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSL 93
>gi|74137801|dbj|BAE24074.1| unnamed protein product [Mus musculus]
Length = 550
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 90/273 (32%), Positives = 153/273 (56%), Gaps = 13/273 (4%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+DN+AL + F FG + +V ++N S+G+A + F T A KA +MNG
Sbjct: 4 IKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGL 62
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ + V + + + +R +G + K++ V++KN E VD+ LK F +FG +
Sbjct: 63 LLNDRKVFVGRFKSRK-EREAELGAKAKEF--TNVYIKNFGEEVDDGNLKELFSQFGKTL 119
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKK 213
VK++RD +GKS+GFGF+ + ++ A KA+ EMNG+ + + FV A+ K+
Sbjct: 120 SVKVMRDSSGKSRGFGFVSYEKHEDANKAVDEMNGKEMSGKAIFVGRAQKKVERQAELKR 179
Query: 214 VFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLV----SDKHIGFI 269
F ++K + + +++ NL I++ + + F+ FG+ITS+ ++ K GF+
Sbjct: 180 KFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFV 239
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F + AT AV+ MNG + SKPL V L+ K
Sbjct: 240 CFPSREEATKAVTEMNGRIVGSKPLYVALAQRK 272
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 103/179 (57%), Gaps = 10/179 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+++ N VD+ L F +FG V+V R+ + +SRGF + + +A KA EMN
Sbjct: 94 VYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDSSGKSRGFGFVSYEKHEDANKAVDEMN 153
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKV--------FVKNLVETVDEEELK 148
G + K + + + K +R + + +Q K++++ ++KNL +T+D+E+L+
Sbjct: 154 GKEMSGKAIFVGRAQKKV-ERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 212
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
F FG+I K++ E+G+SKGFGF+ F S + A KA+ EMNGR++ +V+LA+
Sbjct: 213 KEFSPFGSITSAKVML-EDGRSKGFGFVCFPSREEATKAVTEMNGRIVGSKPLYVALAQ 270
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 87/177 (49%), Gaps = 27/177 (15%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMN 192
VF+KNL +++D + L F FGNI+ K+V DENG SKG+ F+ F + +AA+KAI +MN
Sbjct: 2 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 60
Query: 193 GRMIQHNSTFVSL--------AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSE 244
G ++ FV AE+ K F +++ N +++
Sbjct: 61 GLLLNDRKVFVGRFKSRKEREAELGAKAKEF-------------TNVYIKNFGEEVDDGN 107
Query: 245 FEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
+ELF++FG S ++ D + GF+ + + A AV MNG K + V
Sbjct: 108 LKELFSQFGKTLSVKVMRDSSGKSRGFGFVSYEKHEDANKAVDEMNGKEMSGKAIFV 164
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 49/82 (59%), Gaps = 1/82 (1%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L++ NL+ ++D++ L EF FG++ +V ++ S+GF + F + EA KA
Sbjct: 192 YQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFPSREEATKA 250
Query: 92 RVEMNGHLIGSKPVIITFVELK 113
EMNG ++GSKP+ + + K
Sbjct: 251 VTEMNGRIVGSKPLYVALAQRK 272
>gi|195381687|ref|XP_002049579.1| GJ21671 [Drosophila virilis]
gi|194144376|gb|EDW60772.1| GJ21671 [Drosophila virilis]
Length = 645
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 94/276 (34%), Positives = 154/276 (55%), Gaps = 16/276 (5%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ ++DN+A+ + F FG + +VA ++ S+G+ + F T A + ++NG
Sbjct: 94 IKNLDKAIDNKAIYDTFSAFGNILSCKVATDEKGNSKGYGFVHFETEEAANTSIDKVNGM 153
Query: 99 LIGSKPVII-TFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNI 157
L+ K V + F+ K +R K +G + K + V+VKN E D+E+LK F +G I
Sbjct: 154 LLNGKKVYVGKFIPRK--EREKELGEKAKLF--TNVYVKNFTEEFDDEKLKEFFEPYGKI 209
Query: 158 IEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGR-MIQHNSTFVSLAEIVPGKKVFP 216
K++ E+GKSKGFGF+ + + +AAE A+ +NG+ M + S +V+ A+ ++
Sbjct: 210 TSYKVMSKEDGKSKGFGFVAYETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQQEL 269
Query: 217 KVKPPLLQPARKNKIF-----VANLPSNINNSEFEELFARFGTITSSSLVSD-----KHI 266
K K L+ R +F V NL +I++ + F+ +GTITS+ +++D K
Sbjct: 270 KRKFEELKKKRHESVFGVNLYVKNLDDSIDDERLRKEFSLYGTITSAKVMTDDEGRSKGF 329
Query: 267 GFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ FI P AT AV+ +NG V SKPL V L+ K
Sbjct: 330 GFVCFISPNEATCAVTELNGRVVGSKPLYVALAQRK 365
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 77/258 (29%), Positives = 129/258 (50%), Gaps = 24/258 (9%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L ++ L +F G + +RV R+ S G+A + F PA+A++A M
Sbjct: 4 LYVGDLHQDINEAGLFEKFSTAGPVLSIRVCRDVVTRRSLGYAYVNFQQPADAERALDTM 63
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI +KP+ I + + P R VG VF+KNL + +D + + F FG
Sbjct: 64 NFDLIRNKPIRIMWSQRDPSLRRSGVG---------NVFIKNLDKAIDNKAIYDTFSAFG 114
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ DE G SKG+GF+ F + +AA +I ++NG ++ N V + + +P K+
Sbjct: 115 NILSCKVATDEKGNSKGYGFVHFETEEAANTSIDKVNGMLL--NGKKVYVGKFIPRKERE 172
Query: 216 PKV--KPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS-----DKHIGF 268
++ K L ++V N ++ + +E F +G ITS ++S K GF
Sbjct: 173 KELGEKAKLF-----TNVYVKNFTEEFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGF 227
Query: 269 IEFIMPKHATHAVSTMNG 286
+ + + A AV +NG
Sbjct: 228 VAYETTEAAEAAVQALNG 245
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 95/179 (53%), Gaps = 8/179 (4%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
++V N D++ L F+ +G + +V ++ +S+GF + + T A+ A +N
Sbjct: 185 VYVKNFTEEFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAYETTEAAEAAVQALN 244
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDK--------VFVKNLVETVDEEELK 148
G +G + K +R + + + ++ KK + ++VKNL +++D+E L+
Sbjct: 245 GKDMGEGKSLYVARAQKKAERQQELKRKFEELKKKRHESVFGVNLYVKNLDDSIDDERLR 304
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
F +G I K++ D+ G+SKGFGF+ F S A A+ E+NGR++ +V+LA+
Sbjct: 305 KEFSLYGTITSAKVMTDDEGRSKGFGFVCFISPNEATCAVTELNGRVVGSKPLYVALAQ 363
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 46/77 (59%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L+V NL+ S+D++ L EF +GT+ +V + S+GF + F +P EA A E+N
Sbjct: 289 LYVKNLDDSIDDERLRKEFSLYGTITSAKVMTDDEGRSKGFGFVCFISPNEATCAVTELN 348
Query: 97 GHLIGSKPVIITFVELK 113
G ++GSKP+ + + K
Sbjct: 349 GRVVGSKPLYVALAQRK 365
Score = 38.9 bits (89), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGF--IEFIMPKHATHAVSTM 284
++V +L +IN + E F+ G + S + D + +G+ + F P A A+ TM
Sbjct: 4 LYVGDLHQDINEAGLFEKFSTAGPVLSIRVCRDVVTRRSLGYAYVNFQQPADAERALDTM 63
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N + ++KP+++ S P +
Sbjct: 64 NFDLIRNKPIRIMWSQRDPSL 84
>gi|119625554|gb|EAX05149.1| hCG1647909 [Homo sapiens]
Length = 369
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 88/270 (32%), Positives = 146/270 (54%), Gaps = 13/270 (4%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+DN+ L F FG + +V + + S+G+A + F + A +A EMNG
Sbjct: 102 IKNLDKSIDNKTLYEHFSAFGKILSSKVMSD-DQGSKGYAFVHFQNQSAADRAIEEMNGK 160
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ V FV ++ + K + V++KN +D+E LK F K+G +
Sbjct: 161 LLKGCKV---FVGRFKNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTL 217
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKK 213
VK++ D +GKSKGFGF+ F S++AA+KA+ EMNGR I FV A+ K+
Sbjct: 218 SVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQ 277
Query: 214 VFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGFI 269
+F ++K ++ + K+++ NL I++ + F+ FG+I+ ++ + K G I
Sbjct: 278 MFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEEGQSKGFGLI 337
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299
F P+ AT A++ MNG + SKPL + L+
Sbjct: 338 CFSSPEDATKAMTEMNGRILGSKPLSIALA 367
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 106/179 (59%), Gaps = 10/179 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+++ N +D++ L + F K+G V+V + + +S+GF + F++ AKKA EMN
Sbjct: 192 VYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMN 251
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKD--------KVFVKNLVETVDEEELK 148
G I + + + + K +R + +Q K++ K+++KNL +T+D+E+L+
Sbjct: 252 GRDINGQLIFVGRAQ-KKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLR 310
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
+ F FG+I VK++++E G+SKGFG I F S + A KA+ EMNGR++ ++LA+
Sbjct: 311 NEFSSFGSISRVKVMQEE-GQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSIALAQ 368
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 53/76 (69%), Gaps = 1/76 (1%)
Query: 36 ELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEM 95
+L++ NL+ ++D++ L NEF FG++ V+V + + +S+GF +I F++P +A KA EM
Sbjct: 294 KLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEEG-QSKGFGLICFSSPEDATKAMTEM 352
Query: 96 NGHLIGSKPVIITFVE 111
NG ++GSKP+ I +
Sbjct: 353 NGRILGSKPLSIALAQ 368
>gi|45238849|ref|NP_112241.2| polyadenylate-binding protein 3 [Homo sapiens]
gi|28201852|sp|Q9H361.2|PABP3_HUMAN RecName: Full=Polyadenylate-binding protein 3; Short=PABP-3;
Short=Poly(A)-binding protein 3; AltName:
Full=Testis-specific poly(A)-binding protein
gi|20379668|gb|AAH27617.1| Poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
gi|119628765|gb|EAX08360.1| poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
gi|123982576|gb|ABM83029.1| poly(A) binding protein, cytoplasmic 3 [synthetic construct]
gi|123997243|gb|ABM86223.1| poly(A) binding protein, cytoplasmic 3 [synthetic construct]
gi|189055351|dbj|BAG36140.1| unnamed protein product [Homo sapiens]
Length = 631
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 100/309 (32%), Positives = 163/309 (52%), Gaps = 25/309 (8%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK + W + D R + N + V NL+ S++N+AL + FG +
Sbjct: 78 KGKPVRIMWSQ---RDPSLRKSGVGN-------IFVKNLDKSINNKALYDTVSAFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVII-TFVELKPGQRSKPVG 122
V ++N S+G+ + F T A++A +MNG L+ + V + F K +R +G
Sbjct: 128 CNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRK--EREAELG 184
Query: 123 PEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYK 182
K++ V++KN E +D+E LK F KFG + VK++ DE+GKSKGFGF+ F ++
Sbjct: 185 ARAKEFPN--VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 183 AAEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLP 237
A+KA+ EMNG+ + +V A+ K+ F ++K + + ++V NL
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLD 302
Query: 238 SNINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKP 293
I++ + F+ FGTITS+ ++ + K GF+ F P+ AT AV+ MNG + +KP
Sbjct: 303 DGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 362
Query: 294 LKVTLSGTK 302
L V L+ K
Sbjct: 363 LYVALAQRK 371
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 83/279 (29%), Positives = 130/279 (46%), Gaps = 37/279 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F G + +R+ R+ S +A + F +A+
Sbjct: 8 YPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEH 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KPV I + + P R VG +FVKNL ++++ + L
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVG---------NIFVKNLDKSINNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
FGNI+ +V DENG SKG+GF+ F +++AAE+AI +MNG ++ FV
Sbjct: 119 VSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K FP V ++ N ++++ ++LF +FG S +++
Sbjct: 178 EREAELGARAKEFPNV-------------YIKNFGEDMDDERLKDLFGKFGPALSVKVMT 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
D K GF+ F + A AV MNG K + V
Sbjct: 225 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Score = 39.3 bits (90), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTM 284
++V +L ++ + E F+ G I S + D + ++ F K A HA+ TM
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDTM 72
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N V K KP+++ S P +
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSL 93
>gi|259515737|sp|P0CB38.1|PAB4L_HUMAN RecName: Full=Polyadenylate-binding protein 4-like;
Short=PABP-4-like; Short=Poly(A)-binding protein 4-like
Length = 370
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 88/270 (32%), Positives = 146/270 (54%), Gaps = 13/270 (4%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+DN+ L F FG + +V + + S+G+A + F + A +A EMNG
Sbjct: 102 IKNLDKSIDNKTLYEHFSAFGKILSSKVMSD-DQGSKGYAFVHFQNQSAADRAIEEMNGK 160
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ V FV ++ + K + V++KN +D+E LK F K+G +
Sbjct: 161 LLKGCKV---FVGRFKNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTL 217
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKK 213
VK++ D +GKSKGFGF+ F S++AA+KA+ EMNGR I FV A+ K+
Sbjct: 218 SVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQ 277
Query: 214 VFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGFI 269
+F ++K ++ + K+++ NL I++ + F+ FG+I+ ++ + K G I
Sbjct: 278 MFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEEGQSKGFGLI 337
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299
F P+ AT A++ MNG + SKPL + L+
Sbjct: 338 CFSSPEDATKAMTEMNGRILGSKPLSIALA 367
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 106/179 (59%), Gaps = 10/179 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+++ N +D++ L + F K+G V+V + + +S+GF + F++ AKKA EMN
Sbjct: 192 VYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMN 251
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKD--------KVFVKNLVETVDEEELK 148
G I + + + + K +R + +Q K++ K+++KNL +T+D+E+L+
Sbjct: 252 GRDINGQLIFVGRAQ-KKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLR 310
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
+ F FG+I VK++++E G+SKGFG I F S + A KA+ EMNGR++ ++LA+
Sbjct: 311 NEFSSFGSISRVKVMQEE-GQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSIALAQ 368
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 53/76 (69%), Gaps = 1/76 (1%)
Query: 36 ELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEM 95
+L++ NL+ ++D++ L NEF FG++ V+V + + +S+GF +I F++P +A KA EM
Sbjct: 294 KLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEEG-QSKGFGLICFSSPEDATKAMTEM 352
Query: 96 NGHLIGSKPVIITFVE 111
NG ++GSKP+ I +
Sbjct: 353 NGRILGSKPLSIALAQ 368
>gi|291084655|ref|NP_001108206.2| polyadenylate-binding protein 4-like [Homo sapiens]
Length = 428
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 88/270 (32%), Positives = 146/270 (54%), Gaps = 13/270 (4%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+DN+ L F FG + +V + + S+G+A + F + A +A EMNG
Sbjct: 160 IKNLDKSIDNKTLYEHFSAFGKILSSKVMSD-DQGSKGYAFVHFQNQSAADRAIEEMNGK 218
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ V FV ++ + K + V++KN +D+E LK F K+G +
Sbjct: 219 LLKGCKV---FVGRFKNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTL 275
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKK 213
VK++ D +GKSKGFGF+ F S++AA+KA+ EMNGR I FV A+ K+
Sbjct: 276 SVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQ 335
Query: 214 VFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGFI 269
+F ++K ++ + K+++ NL I++ + F+ FG+I+ ++ + K G I
Sbjct: 336 MFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEEGQSKGFGLI 395
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299
F P+ AT A++ MNG + SKPL + L+
Sbjct: 396 CFSSPEDATKAMTEMNGRILGSKPLSIALA 425
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 106/179 (59%), Gaps = 10/179 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+++ N +D++ L + F K+G V+V + + +S+GF + F++ AKKA EMN
Sbjct: 250 VYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMN 309
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKD--------KVFVKNLVETVDEEELK 148
G I + + + + K +R + +Q K++ K+++KNL +T+D+E+L+
Sbjct: 310 GRDINGQLIFVGRAQ-KKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLR 368
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
+ F FG+I VK++++E G+SKGFG I F S + A KA+ EMNGR++ ++LA+
Sbjct: 369 NEFSSFGSISRVKVMQEE-GQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSIALAQ 426
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 53/76 (69%), Gaps = 1/76 (1%)
Query: 36 ELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEM 95
+L++ NL+ ++D++ L NEF FG++ V+V + + +S+GF +I F++P +A KA EM
Sbjct: 352 KLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEEG-QSKGFGLICFSSPEDATKAMTEM 410
Query: 96 NGHLIGSKPVIITFVE 111
NG ++GSKP+ I +
Sbjct: 411 NGRILGSKPLSIALAQ 426
>gi|336465951|gb|EGO54116.1| hypothetical protein NEUTE1DRAFT_87204 [Neurospora tetrasperma FGSC
2508]
gi|350287213|gb|EGZ68460.1| polyadenylate binding protein [Neurospora tetrasperma FGSC 2509]
Length = 764
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 86/268 (32%), Positives = 138/268 (51%), Gaps = 24/268 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+PSV L F + G++ +RV R+ S G+A + +NT A+ +KA E+
Sbjct: 62 LYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEEL 121
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI +P I + + P R G +F+KNL +D + L F FG
Sbjct: 122 NYTLIKGRPCRIMWSQRDPALRKTGAG---------NIFIKNLDAAIDNKALHDTFAAFG 172
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ +DE+G SKG+GF+ + + +AA +AI +NG ++ +V G +
Sbjct: 173 NILSCKVAQDEHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYV-------GHHIP 225
Query: 216 PKVKPPLLQPARKN--KIFVANLPSNINNSEFEELFARFGTITSSSLVSDKH-----IGF 268
K + + + N ++V N+ + + + EF ELFA+FG +TSSSL D+ GF
Sbjct: 226 KKDRQSKFEEMKANFTNVYVKNINNEVTDEEFRELFAKFGEVTSSSLARDQEGKTRGFGF 285
Query: 269 IEFIMPKHATHAVSTMNGHVFKSKPLKV 296
+ F + A AV +NG F+ + L V
Sbjct: 286 VNFTTHEAAAQAVDELNGKDFRGQDLYV 313
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 82/316 (25%), Positives = 150/316 (47%), Gaps = 53/316 (16%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ ++DN+AL + F FG + +VA++++ S+G+ + + T A +A +N
Sbjct: 150 IFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEHGNSKGYGFVHYETDEAASQAIKHVN 209
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G L+ K V + K ++SK EE + V+VKN+ V +EE + F KFG
Sbjct: 210 GMLLNEKKVYVGHHIPKKDRQSKF---EEMKANFTNVYVKNINNEVTDEEFRELFAKFGE 266
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGK--KV 214
+ + RD+ GK++GFGF+ F +++AA +A+ E+NG+ + +V A+ + ++
Sbjct: 267 VTSSSLARDQEGKTRGFGFVNFTTHEAAAQAVDELNGKDFRGQDLYVGRAQKKHEREEEL 326
Query: 215 FPKVKPPLLQPARKNK---IFVANLPSNINNSEFEELFARFGTITSSSLVSD-------- 263
+ L+ A K + +++ NL ++++ + +F+ +G ITS+ ++ D
Sbjct: 327 RKSYEAARLEKANKYQGVNLYIKNLGDDVDDDKLRAMFSEYGPITSAKVMRDSLIEGSEE 386
Query: 264 -------------------------------------KHIGFIEFIMPKHATHAVSTMNG 286
K GF+ F P AT AV+ MN
Sbjct: 387 KDEKDKENKKEGEAEEEQKEGSEKKTEKKGDRKLGKSKGFGFVCFSNPDDATKAVTEMNQ 446
Query: 287 HVFKSKPLKVTLSGTK 302
+ KPL V L+ K
Sbjct: 447 RMVDGKPLYVALAQRK 462
Score = 40.8 bits (94), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 55/140 (39%), Gaps = 42/140 (30%)
Query: 20 EGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARN---------- 69
E AR K N Y+ L++ NL VD+ L F ++G + +V R+
Sbjct: 331 EAARLEKANK--YQGVNLYIKNLGDDVDDDKLRAMFSEYGPITSAKVMRDSLIEGSEEKD 388
Query: 70 --------------------------KND----ESRGFAIIVFNTPAEAKKARVEMNGHL 99
K D +S+GF + F+ P +A KA EMN +
Sbjct: 389 EKDKENKKEGEAEEEQKEGSEKKTEKKGDRKLGKSKGFGFVCFSNPDDATKAVTEMNQRM 448
Query: 100 IGSKPVIITFVELKPGQRSK 119
+ KP+ + + K ++S+
Sbjct: 449 VDGKPLYVALAQRKDVRKSQ 468
>gi|85097328|ref|XP_960425.1| polyadenylate-binding protein [Neurospora crassa OR74A]
gi|74696454|sp|Q7S6N6.1|PABP_NEUCR RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|28921916|gb|EAA31189.1| polyadenylate-binding protein [Neurospora crassa OR74A]
Length = 764
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 86/268 (32%), Positives = 138/268 (51%), Gaps = 24/268 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+PSV L F + G++ +RV R+ S G+A + +NT A+ +KA E+
Sbjct: 62 LYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEEL 121
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI +P I + + P R G +F+KNL +D + L F FG
Sbjct: 122 NYTLIKGRPCRIMWSQRDPALRKTGAG---------NIFIKNLDAAIDNKALHDTFAAFG 172
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ +DE+G SKG+GF+ + + +AA +AI +NG ++ +V G +
Sbjct: 173 NILSCKVAQDEHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYV-------GHHIP 225
Query: 216 PKVKPPLLQPARKN--KIFVANLPSNINNSEFEELFARFGTITSSSLVSDKH-----IGF 268
K + + + N ++V N+ + + + EF ELFA+FG +TSSSL D+ GF
Sbjct: 226 KKDRQSKFEEMKANFTNVYVKNINNEVTDEEFRELFAKFGEVTSSSLARDQEGKSRGFGF 285
Query: 269 IEFIMPKHATHAVSTMNGHVFKSKPLKV 296
+ F + A AV +NG F+ + L V
Sbjct: 286 VNFTTHEAAAQAVDELNGKDFRGQDLYV 313
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 83/317 (26%), Positives = 150/317 (47%), Gaps = 54/317 (17%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ ++DN+AL + F FG + +VA++++ S+G+ + + T A +A +N
Sbjct: 150 IFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEHGNSKGYGFVHYETDEAASQAIKHVN 209
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G L+ K V + K ++SK EE + V+VKN+ V +EE + F KFG
Sbjct: 210 GMLLNEKKVYVGHHIPKKDRQSKF---EEMKANFTNVYVKNINNEVTDEEFRELFAKFGE 266
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGK--KV 214
+ + RD+ GKS+GFGF+ F +++AA +A+ E+NG+ + +V A+ + ++
Sbjct: 267 VTSSSLARDQEGKSRGFGFVNFTTHEAAAQAVDELNGKDFRGQDLYVGRAQKKHEREEEL 326
Query: 215 FPKVKPPLLQPARKNK---IFVANLPSNINNSEFEELFARFGTITSSSLVSD-------- 263
+ L+ A K + +++ NL ++++ + +F+ +G ITS+ ++ D
Sbjct: 327 RKSYEAARLEKANKYQGVNLYIKNLGDDVDDDKLRAMFSEYGPITSAKVMRDSLIEGSEE 386
Query: 264 --------------------------------------KHIGFIEFIMPKHATHAVSTMN 285
K GF+ F P AT AV+ MN
Sbjct: 387 KDEKDKENKKEGETKEEEQNEGSEKKTEKKGDRKLGKSKGFGFVCFSNPDDATKAVTEMN 446
Query: 286 GHVFKSKPLKVTLSGTK 302
+ KPL V L+ K
Sbjct: 447 QRMVDGKPLYVALAQRK 463
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 55/141 (39%), Gaps = 43/141 (30%)
Query: 20 EGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARN---------- 69
E AR K N Y+ L++ NL VD+ L F ++G + +V R+
Sbjct: 331 EAARLEKANK--YQGVNLYIKNLGDDVDDDKLRAMFSEYGPITSAKVMRDSLIEGSEEKD 388
Query: 70 ---------------------------KND----ESRGFAIIVFNTPAEAKKARVEMNGH 98
K D +S+GF + F+ P +A KA EMN
Sbjct: 389 EKDKENKKEGETKEEEQNEGSEKKTEKKGDRKLGKSKGFGFVCFSNPDDATKAVTEMNQR 448
Query: 99 LIGSKPVIITFVELKPGQRSK 119
++ KP+ + + K ++S+
Sbjct: 449 MVDGKPLYVALAQRKDVRKSQ 469
>gi|440638008|gb|ELR07927.1| hypothetical protein GMDG_02786 [Geomyces destructans 20631-21]
Length = 805
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 90/269 (33%), Positives = 140/269 (52%), Gaps = 26/269 (9%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+PSV L F + G++ +RV R+ S G+A + +NT + +KA E+
Sbjct: 64 LYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTIDGEKALEEL 123
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI +P I + + P R G VF+KNL +D + L F FG
Sbjct: 124 NYTLIKGRPCRIMWSQRDPALRKTGQG---------NVFIKNLDVAIDNKALHDTFAAFG 174
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKV- 214
NI+ K+ +DE+G SKG+GF+ + + +AA +AI +NG ++ FV +P K
Sbjct: 175 NILSCKVAQDESGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVFV--GHHIPKKDRQ 232
Query: 215 --FPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIG 267
F ++K A I+V N+P++ + +F ELF +FG +TS+SL D + G
Sbjct: 233 SKFEEMK------ANFTNIYVKNIPADATDDQFRELFEKFGDVTSASLARDEAGKNRGFG 286
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
F+ FI +HA+ AV +NG F + L V
Sbjct: 287 FVNFINHEHASAAVDELNGKDFMGQDLYV 315
Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 72/271 (26%), Positives = 137/271 (50%), Gaps = 30/271 (11%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KG+ W + D R + N + + NL+ ++DN+AL + F FG +
Sbjct: 129 KGRPCRIMWSQ---RDPALRKTGQGN-------VFIKNLDVAIDNKALHDTFAAFGNILS 178
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+VA++++ S+G+ + + T A +A +NG L+ K V + K ++SK
Sbjct: 179 CKVAQDESGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVFVGHHIPKKDRQSKF--- 235
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
EE + ++VKN+ +++ + F KFG++ + RDE GK++GFGF+ F +++
Sbjct: 236 EEMKANFTNIYVKNIPADATDDQFRELFEKFGDVTSASLARDEAGKNRGFGFVNFINHEH 295
Query: 184 AEKAIIEMNGRMIQHNSTFVSLA--------EIVPGKKVFPKVKPPLLQPARKNK---IF 232
A A+ E+NG+ +V A E+ +K + + ++ A K + ++
Sbjct: 296 ASAAVDELNGKDFMGQDLYVGRAQKKHEREEEL---RKSYEAAR---IEKASKYQGVNLY 349
Query: 233 VANLPSNINNSEFEELFARFGTITSSSLVSD 263
V NL ++++ + ELFA +G ITS+ ++ D
Sbjct: 350 VKNLEDDVDDEKLRELFAPYGAITSAKVMRD 380
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 27/40 (67%)
Query: 168 GKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
GKSKGFGF+ F + A KA+ EMN RM+ +V+LA+
Sbjct: 447 GKSKGFGFVCFNNPDEATKAVTEMNQRMVNGKPLYVALAQ 486
Score = 40.4 bits (93), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 74 SRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELK 113
S+GF + FN P EA KA EMN ++ KP+ + + K
Sbjct: 449 SKGFGFVCFNNPDEATKAVTEMNQRMVNGKPLYVALAQRK 488
>gi|348502707|ref|XP_003438909.1| PREDICTED: embryonic polyadenylate-binding protein-like
[Oreochromis niloticus]
Length = 623
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 95/305 (31%), Positives = 161/305 (52%), Gaps = 23/305 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KG+ + W + D G R + N + + N++ S+DN+AL + F FG +
Sbjct: 78 KGRPIRIMWSQ---RDPGLRKSGVGN-------IFIKNMDESIDNKALYDTFSAFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V ++ S+G+ + F T A +A MNG L+ + V FV ++ + V
Sbjct: 128 CKVVCDEKG-SKGYGFVHFETQEAANRAIETMNGMLLNDRKV---FVGHFKSRKEREVEF 183
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
K K V++KN E +E+LK F FG + V++++DE G+S+GFGF+ + ++
Sbjct: 184 GSKAMKFTNVYIKNFGEDFTDEKLKEVFSAFGRTLSVRVMKDEKGRSRGFGFVNYAHHED 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A+KA+ EMNG+ I +V A+ K+ F ++K +Q + ++V NL
Sbjct: 244 AQKAVNEMNGKEINGKILYVGRAQKRLERQGELKRKFDQIKQDRIQRYQGVNLYVKNLDD 303
Query: 239 NINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
+I++ + FA +GTITS+ +++D K GF+ F P+ AT AV+ MNG + +KPL
Sbjct: 304 SIDDERLRKEFAPYGTITSAKVMTDGSQSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Query: 295 KVTLS 299
V L+
Sbjct: 364 YVALA 368
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 82/278 (29%), Positives = 130/278 (46%), Gaps = 33/278 (11%)
Query: 31 VYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAK 89
Y L+V +L P V L +F G + +RV R+ S G+A + F PA+A+
Sbjct: 7 AYPLASLYVGDLHPDVTEAMLYQKFSPAGPIMSIRVCRDIITRRSLGYAYVNFQQPADAE 66
Query: 90 KARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKS 149
A MN +I +P+ I + + PG R VG +F+KN+ E++D + L
Sbjct: 67 CALDTMNYDVIKGRPIRIMWSQRDPGLRKSGVG---------NIFIKNMDESIDNKALYD 117
Query: 150 HFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL---- 205
F FGNI+ K+V DE G SKG+GF+ F + +AA +AI MNG ++ FV
Sbjct: 118 TFSAFGNILSCKVVCDEKG-SKGYGFVHFETQEAANRAIETMNGMLLNDRKVFVGHFKSR 176
Query: 206 --AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD 263
E+ G K + +++ N + + + +E+F+ FG S ++ D
Sbjct: 177 KEREVEFGSKAM-----------KFTNVYIKNFGEDFTDEKLKEVFSAFGRTLSVRVMKD 225
Query: 264 -----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
+ GF+ + + A AV+ MNG K L V
Sbjct: 226 EKGRSRGFGFVNYAHHEDAQKAVNEMNGKEINGKILYV 263
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 99/187 (52%), Gaps = 10/187 (5%)
Query: 29 NKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEA 88
+K K +++ N ++ L F FG VRV +++ SRGF + + +A
Sbjct: 185 SKAMKFTNVYIKNFGEDFTDEKLKEVFSAFGRTLSVRVMKDEKGRSRGFGFVNYAHHEDA 244
Query: 89 KKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKV--------FVKNLVE 140
+KA EMNG I K + + + K +R + + Q K+D++ +VKNL +
Sbjct: 245 QKAVNEMNGKEINGKILYVGRAQ-KRLERQGELKRKFDQIKQDRIQRYQGVNLYVKNLDD 303
Query: 141 TVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNS 200
++D+E L+ F +G I K++ D +SKGFGF+ F S + A KA+ EMNGR++
Sbjct: 304 SIDDERLRKEFAPYGTITSAKVMTD-GSQSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 362
Query: 201 TFVSLAE 207
+V+LA+
Sbjct: 363 LYVALAQ 369
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L+V NL+ S+D++ L EF +GT+ +V + +S+GF + F++P EA KA
Sbjct: 291 YQGVNLYVKNLDDSIDDERLRKEFAPYGTITSAKVMTD-GSQSKGFGFVCFSSPEEATKA 349
Query: 92 RVEMNGHLIGSKPVIITFVELK 113
EMNG ++ +KP+ + + +
Sbjct: 350 VTEMNGRIVATKPLYVALAQRR 371
>gi|185135971|ref|NP_001118228.1| polyadenylate-binding protein 1-like [Homo sapiens]
gi|74754038|sp|Q4VXU2.1|PAP1L_HUMAN RecName: Full=Polyadenylate-binding protein 1-like
gi|119596298|gb|EAW75892.1| hCG2019100, isoform CRA_f [Homo sapiens]
Length = 614
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 95/311 (30%), Positives = 167/311 (53%), Gaps = 29/311 (9%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KG+ + W + D G R + N + + NLE S+DN+AL + F FG +
Sbjct: 78 KGQPIRIMWSQ---RDPGLRKSGVGN-------IFIKNLEDSIDNKALYDTFSTFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+VA +++ SRGF + F T A++A MNG L+ + V + + + +R +G
Sbjct: 128 CKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSR-REREAELGA 185
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
++ ++VKNL VDE+ L+ F +FG ++ VK++RD +G S+ FGF+ F ++
Sbjct: 186 RALEFTN--IYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEE 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLA--------EIVPGKKVFPKVKPPLLQPARKNKIFVAN 235
A+KA++ MNG+ + + A E+ K+ F ++K L+ + ++V N
Sbjct: 244 AQKAVVHMNGKEVSGRLLYAGRAQKRVERQNEL---KRRFEQMKQDRLRRYQGVNLYVKN 300
Query: 236 LPSNINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKS 291
L +I++ + + F+ +G ITS+ ++++ K GF+ F P+ AT AV+ MNG + +
Sbjct: 301 LDDSIDDDKLRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGT 360
Query: 292 KPLKVTLSGTK 302
KPL V L+ K
Sbjct: 361 KPLYVALAQRK 371
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 133/269 (49%), Gaps = 37/269 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F G + +RV R+ S G+A I F PA+A++
Sbjct: 8 YPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN ++ +P+ I + + PG R VG +F+KNL +++D + L
Sbjct: 68 ALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVG---------NIFIKNLEDSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+ DE+G S+GFGF+ F +++AA++AI MNG ++ FV
Sbjct: 119 FSTFGNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRR 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ G + I+V NLP +++ ++LF++FG + S ++
Sbjct: 178 EREAEL--GARAL-----------EFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMR 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNG 286
D + GF+ F + A AV MNG
Sbjct: 225 DNSGHSRCFGFVNFEKHEEAQKAVVHMNG 253
>gi|426391820|ref|XP_004062264.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Gorilla
gorilla gorilla]
Length = 614
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 95/311 (30%), Positives = 167/311 (53%), Gaps = 29/311 (9%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KG+ + W + D G R + N + + NLE S+DN+AL + F FG +
Sbjct: 78 KGQPIRIMWSQ---RDPGLRKSGVGN-------IFIKNLEDSIDNKALYDTFSTFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+VA +++ SRGF + F T A++A MNG L+ + V + + + +R +G
Sbjct: 128 CKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSR-REREAELGA 185
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
++ ++VKNL VDE+ L+ F +FG ++ VK++RD +G S+ FGF+ F ++
Sbjct: 186 RALEFTN--IYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEE 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLA--------EIVPGKKVFPKVKPPLLQPARKNKIFVAN 235
A+KA++ MNG+ + + A E+ K+ F ++K L+ + ++V N
Sbjct: 244 AQKAVVHMNGKEVSGRLLYAGRAQKRVERQNEL---KRRFEQMKQDRLRRYQGVNLYVKN 300
Query: 236 LPSNINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKS 291
L +I++ + + F+ +G ITS+ ++++ K GF+ F P+ AT AV+ MNG + +
Sbjct: 301 LDDSIDDDKLRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGT 360
Query: 292 KPLKVTLSGTK 302
KPL V L+ K
Sbjct: 361 KPLYVALAQRK 371
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 133/269 (49%), Gaps = 37/269 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F G + +RV R+ S G+A I F PA+A++
Sbjct: 8 YPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN ++ +P+ I + + PG R VG +F+KNL +++D + L
Sbjct: 68 ALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVG---------NIFIKNLEDSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+ DE+G S+GFGF+ F +++AA++AI MNG ++ FV
Sbjct: 119 FSTFGNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRR 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ G + I+V NLP +++ ++LF++FG + S ++
Sbjct: 178 EREAEL--GARAL-----------EFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMR 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNG 286
D + GF+ F + A AV MNG
Sbjct: 225 DNSGHSRCFGFVNFEKHEEAQKAVVHMNG 253
>gi|195150897|ref|XP_002016387.1| GL11548 [Drosophila persimilis]
gi|194110234|gb|EDW32277.1| GL11548 [Drosophila persimilis]
Length = 640
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 94/276 (34%), Positives = 152/276 (55%), Gaps = 16/276 (5%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ +DN+A+ + F FG + +VA ++ S+G+ + F T A + +NG
Sbjct: 94 IKNLDKGIDNKAIYDTFSAFGNILSCKVAIDEKGNSKGYGFVHFETEEAANTSIDRVNGM 153
Query: 99 LIGSKPVII-TFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNI 157
L+ K V + F+ K +R K +G + K + V+VKN E D+E+LK F +G I
Sbjct: 154 LLNGKKVYVGKFIPRK--EREKELGEKAKLFTN--VYVKNFTEDFDDEKLKEFFEPYGKI 209
Query: 158 IEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGR-MIQHNSTFVSLAEIVPGKKVFP 216
K++ E+GKSKGFGF+ + + +AAE A+ +NG+ M + S +V+ A+ ++
Sbjct: 210 TSYKVMSKEDGKSKGFGFVAYETTEAAEAAVQALNGKDMGESKSLYVARAQKKAERQQEL 269
Query: 217 KVKPPLLQPARKNKIF-----VANLPSNINNSEFEELFARFGTITSSSLVSD-----KHI 266
K K L+ R + +F V NL I++ + F+ +GTITS+ +++D K
Sbjct: 270 KRKFEELKKKRHDSVFGVNLYVKNLDDTIDDERLRKDFSMYGTITSAKVMTDEEGRSKGF 329
Query: 267 GFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ FI P AT AV+ +NG V SKPL V L+ K
Sbjct: 330 GFVCFISPNEATCAVTELNGRVIGSKPLYVALAQRK 365
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 81/270 (30%), Positives = 135/270 (50%), Gaps = 25/270 (9%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L ++ L +F G + +RV R+ S G+A + F PA+A++A M
Sbjct: 4 LYVGDLHQDINEAGLFEKFSTAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTM 63
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI +KP+ I + + P R VG VF+KNL + +D + + F FG
Sbjct: 64 NFDLIRNKPIRIMWSQRDPSLRRSGVG---------NVFIKNLDKGIDNKAIYDTFSAFG 114
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ DE G SKG+GF+ F + +AA +I +NG ++ N V + + +P K+
Sbjct: 115 NILSCKVAIDEKGNSKGYGFVHFETEEAANTSIDRVNGMLL--NGKKVYVGKFIPRKERE 172
Query: 216 PKV--KPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS-----DKHIGF 268
++ K L ++V N + ++ + +E F +G ITS ++S K GF
Sbjct: 173 KELGEKAKLF-----TNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGF 227
Query: 269 IEFIMPKHATHAVSTMNG-HVFKSKPLKVT 297
+ + + A AV +NG + +SK L V
Sbjct: 228 VAYETTEAAEAAVQALNGKDMGESKSLYVA 257
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 94/179 (52%), Gaps = 8/179 (4%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
++V N D++ L F+ +G + +V ++ +S+GF + + T A+ A +N
Sbjct: 185 VYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAYETTEAAEAAVQALN 244
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVG---PEEKQYKKDKVF-----VKNLVETVDEEELK 148
G +G + K +R + + E K+ + D VF VKNL +T+D+E L+
Sbjct: 245 GKDMGESKSLYVARAQKKAERQQELKRKFEELKKKRHDSVFGVNLYVKNLDDTIDDERLR 304
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
F +G I K++ DE G+SKGFGF+ F S A A+ E+NGR+I +V+LA+
Sbjct: 305 KDFSMYGTITSAKVMTDEEGRSKGFGFVCFISPNEATCAVTELNGRVIGSKPLYVALAQ 363
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 53/88 (60%), Gaps = 1/88 (1%)
Query: 26 KENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTP 85
K ++ V+ N L+V NL+ ++D++ L +F +GT+ +V ++ S+GF + F +P
Sbjct: 279 KRHDSVFGVN-LYVKNLDDTIDDERLRKDFSMYGTITSAKVMTDEEGRSKGFGFVCFISP 337
Query: 86 AEAKKARVEMNGHLIGSKPVIITFVELK 113
EA A E+NG +IGSKP+ + + K
Sbjct: 338 NEATCAVTELNGRVIGSKPLYVALAQRK 365
>gi|297707183|ref|XP_002830392.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Pongo
abelii]
Length = 614
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 95/311 (30%), Positives = 167/311 (53%), Gaps = 29/311 (9%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KG+ + W + D G R + N + + NLE S+DN+AL + F FG +
Sbjct: 78 KGQPIRIMWSQ---RDPGLRKSGVGN-------IFIKNLEDSIDNKALYDTFSTFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+VA +++ SRGF + F T A++A MNG L+ + V + + + +R +G
Sbjct: 128 CKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSR-REREAELGA 185
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
++ ++VKNL VDE+ L+ F +FG ++ VK++RD +G S+ FGF+ F ++
Sbjct: 186 RALEFTN--IYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEE 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLA--------EIVPGKKVFPKVKPPLLQPARKNKIFVAN 235
A+KA++ MNG+ + + A E+ K+ F ++K L+ + ++V N
Sbjct: 244 AQKAVVHMNGKEVSGRLLYAGRAQKRVERQNEL---KRRFEQMKQDRLRRYQGVNLYVKN 300
Query: 236 LPSNINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKS 291
L +I++ + + F+ +G ITS+ ++++ K GF+ F P+ AT AV+ MNG + +
Sbjct: 301 LDDSIDDDKLRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGT 360
Query: 292 KPLKVTLSGTK 302
KPL V L+ K
Sbjct: 361 KPLYVALAQRK 371
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 133/269 (49%), Gaps = 37/269 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F G + +RV R+ S G+A I F PA+A++
Sbjct: 8 YPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN ++ +P+ I + + PG R VG +F+KNL +++D + L
Sbjct: 68 ALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVG---------NIFIKNLEDSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+ DE+G S+GFGF+ F +++AA++AI MNG ++ FV
Sbjct: 119 FSTFGNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRR 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ G + I+V NLP +++ ++LF++FG + S ++
Sbjct: 178 EREAEL--GARAL-----------EFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMR 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNG 286
D + GF+ F + A AV MNG
Sbjct: 225 DNSGHSRCFGFVNFEKHEEAQKAVVHMNG 253
>gi|359495203|ref|XP_002263507.2| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein 3
[Vitis vinifera]
Length = 1093
Score = 145 bits (367), Expect = 2e-32, Method: Composition-based stats.
Identities = 91/278 (32%), Positives = 153/278 (55%), Gaps = 22/278 (7%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+PS+DN+AL++ F FGT+ ++A + N +S+G+ + F A+ A +NG
Sbjct: 565 IKNLDPSIDNKALLDTFAAFGTVLSCKIALDNNGQSKGYGFVQFEQEEAAQNAIKRLNGM 624
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
LI K V + ++ +R++ G K V+VKNL ET +++LK+ F K+G+I
Sbjct: 625 LINDKQVYVGLF-VRHQERNRGNGSP----KFTNVYVKNLSETTTDDDLKNIFGKYGSIT 679
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNST-FVSLAEIVPGKKVFPK 217
++RD +G SK FGF+ F S +A A+ +NG + +V A+ ++ +
Sbjct: 680 SAVVMRDASGMSKCFGFVNFQSSDSAAAAVEHLNGATFNDDKVWYVGKAQRKSEREAELR 739
Query: 218 VKPPLLQPARKNK--------IFVANLPSNINNSEFEELFARFGTITSSSLVSD-----K 264
K + RKNK +++ NL ++N+ + +ELF+ FGTITS ++ D K
Sbjct: 740 AK---FEQERKNKFEKFKGTNLYLKNLDDSVNDEKLKELFSEFGTITSCKVMLDPQGLSK 796
Query: 265 HIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ F+ P+ AT A++ MNG + KPL V ++ K
Sbjct: 797 GSGFVAFLTPEEATRALNVMNGKMIGRKPLYVAVAQRK 834
Score = 109 bits (272), Expect = 2e-21, Method: Composition-based stats.
Identities = 74/264 (28%), Positives = 125/264 (47%), Gaps = 22/264 (8%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
+ L+V +L+ ++ L + F++ + +RV R++ S G+A + F +P +A
Sbjct: 470 FANASLYVGDLDTAIGEGQLYDLFQQVAPVLSIRVCRDQARRASLGYAYVNFASPQDATN 529
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A +N + KP+ I F P R VF+KNL ++D + L
Sbjct: 530 ALEHLNFTPLNGKPIRIMFSHRDPSIRKSGFA---------NVFIKNLDPSIDNKALLDT 580
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVP 210
F FG ++ KI D NG+SKG+GF+QF +AA+ AI +NG +I +V L V
Sbjct: 581 FAAFGTVLSCKIALDNNGQSKGYGFVQFEQEEAAQNAIKRLNGMLINDKQVYVGL--FVR 638
Query: 211 GKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KH 265
++ P + ++V NL + + + +F ++G+ITS+ ++ D K
Sbjct: 639 HQERNRGNGSP-----KFTNVYVKNLSETTTDDDLKNIFGKYGSITSAVVMRDASGMSKC 693
Query: 266 IGFIEFIMPKHATHAVSTMNGHVF 289
GF+ F A AV +NG F
Sbjct: 694 FGFVNFQSSDSAAAAVEHLNGATF 717
Score = 84.0 bits (206), Expect = 1e-13, Method: Composition-based stats.
Identities = 55/202 (27%), Positives = 100/202 (49%), Gaps = 13/202 (6%)
Query: 33 KENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKAR 92
K ++V NL + + L N F K+G++ V R+ + S+ F + F + A A
Sbjct: 650 KFTNVYVKNLSETTTDDDLKNIFGKYGSITSAVVMRDASGMSKCFGFVNFQSSDSAAAAV 709
Query: 93 VEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDK--------VFVKNLVETVDE 144
+NG V + +R + + +Q +K+K +++KNL ++V++
Sbjct: 710 EHLNGATFNDDKVWYVGKAQRKSEREAELRAKFEQERKNKFEKFKGTNLYLKNLDDSVND 769
Query: 145 EELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVS 204
E+LK F +FG I K++ D G SKG GF+ F + + A +A+ MNG+MI +V+
Sbjct: 770 EKLKELFSEFGTITSCKVMLDPQGLSKGSGFVAFLTPEEATRALNVMNGKMIGRKPLYVA 829
Query: 205 LAEIVPGKKV-----FPKVKPP 221
+A+ +K F +++ P
Sbjct: 830 VAQRKEERKARLQAQFAQIRSP 851
Score = 57.8 bits (138), Expect = 7e-06, Method: Composition-based stats.
Identities = 32/100 (32%), Positives = 54/100 (54%), Gaps = 2/100 (2%)
Query: 20 EGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAI 79
E R NK +K L++ NL+ SV+++ L F +FGT+ +V + S+G
Sbjct: 743 EQERKNKFEK--FKGTNLYLKNLDDSVNDEKLKELFSEFGTITSCKVMLDPQGLSKGSGF 800
Query: 80 IVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSK 119
+ F TP EA +A MNG +IG KP+ + + K ++++
Sbjct: 801 VAFLTPEEATRALNVMNGKMIGRKPLYVAVAQRKEERKAR 840
>gi|195429537|ref|XP_002062815.1| GK19652 [Drosophila willistoni]
gi|194158900|gb|EDW73801.1| GK19652 [Drosophila willistoni]
Length = 638
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 95/276 (34%), Positives = 153/276 (55%), Gaps = 16/276 (5%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ +DN+A+ + F FG + +VA ++ S+G+ + F T A + ++NG
Sbjct: 94 IKNLDRQIDNKAIYDTFSAFGNILSCKVALDEKGNSKGYGFVHFETEEAANTSIEKVNGM 153
Query: 99 LIGSKPVII-TFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNI 157
L+ K V + F+ K +R K +G + K + V+VKN E D+E+LK F +G I
Sbjct: 154 LLNGKKVYVGKFIPRK--EREKELGEKAKLF--TNVYVKNFTEEFDDEKLKDFFEPYGKI 209
Query: 158 IEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGR-MIQHNSTFVSLAEIVPGKKVFP 216
K++ E+GKSKGFGF+ F + +AAE A+ +NG+ M + S +V+ A+ ++
Sbjct: 210 TSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQQEL 269
Query: 217 KVKPPLLQPARKNKIF-----VANLPSNINNSEFEELFARFGTITSSSLVSD-----KHI 266
K K L+ R +F V NL +I++ + F+ +GTITS+ +++D K
Sbjct: 270 KRKFEELKKKRHESVFGVNLYVKNLDDSIDDERLRKEFSLYGTITSAKVMTDEEGRSKGF 329
Query: 267 GFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ FI P AT AV+ +NG V SKPL V L+ K
Sbjct: 330 GFVCFISPNEATCAVTELNGRVVGSKPLYVALAQRK 365
Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 77/258 (29%), Positives = 128/258 (49%), Gaps = 24/258 (9%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L ++ L +F G + +RV R+ S G+A + F PA+A++A M
Sbjct: 4 LYVGDLHQDINEAGLFEKFSSAGPVLSIRVCRDVVTRRSLGYAYVNFQQPADAERALDTM 63
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI +KP+ I + + P R VG VF+KNL +D + + F FG
Sbjct: 64 NFDLIRNKPIRIMWSQRDPSLRRSGVG---------NVFIKNLDRQIDNKAIYDTFSAFG 114
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ DE G SKG+GF+ F + +AA +I ++NG ++ N V + + +P K+
Sbjct: 115 NILSCKVALDEKGNSKGYGFVHFETEEAANTSIEKVNGMLL--NGKKVYVGKFIPRKERE 172
Query: 216 PKV--KPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS-----DKHIGF 268
++ K L ++V N ++ + ++ F +G ITS ++S K GF
Sbjct: 173 KELGEKAKLF-----TNVYVKNFTEEFDDEKLKDFFEPYGKITSYKVMSKEDGKSKGFGF 227
Query: 269 IEFIMPKHATHAVSTMNG 286
+ F + A AV +NG
Sbjct: 228 VAFETTEAAEAAVQALNG 245
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 96/179 (53%), Gaps = 8/179 (4%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
++V N D++ L + F+ +G + +V ++ +S+GF + F T A+ A +N
Sbjct: 185 VYVKNFTEEFDDEKLKDFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALN 244
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDK--------VFVKNLVETVDEEELK 148
G +G + K +R + + + ++ KK + ++VKNL +++D+E L+
Sbjct: 245 GKDMGEGKSLYVARAQKKAERQQELKRKFEELKKKRHESVFGVNLYVKNLDDSIDDERLR 304
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
F +G I K++ DE G+SKGFGF+ F S A A+ E+NGR++ +V+LA+
Sbjct: 305 KEFSLYGTITSAKVMTDEEGRSKGFGFVCFISPNEATCAVTELNGRVVGSKPLYVALAQ 363
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 47/77 (61%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L+V NL+ S+D++ L EF +GT+ +V ++ S+GF + F +P EA A E+N
Sbjct: 289 LYVKNLDDSIDDERLRKEFSLYGTITSAKVMTDEEGRSKGFGFVCFISPNEATCAVTELN 348
Query: 97 GHLIGSKPVIITFVELK 113
G ++GSKP+ + + K
Sbjct: 349 GRVVGSKPLYVALAQRK 365
>gi|147899475|ref|NP_001085069.1| polyadenylate-binding protein 1-B [Xenopus laevis]
gi|82236793|sp|Q6IP09.1|PABPB_XENLA RecName: Full=Polyadenylate-binding protein 1-B; Short=PABP-1-B;
Short=Poly(A)-binding protein 1-B; Short=xPABP1-B;
AltName: Full=Cytoplasmic poly(A)-binding protein 1-B
gi|47940242|gb|AAH72110.1| MGC79060 protein [Xenopus laevis]
gi|80476254|gb|AAI08463.1| MGC79060 protein [Xenopus laevis]
Length = 633
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 94/308 (30%), Positives = 165/308 (53%), Gaps = 23/308 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK + W + D R + N + + NL+ S+DN+AL + F FG +
Sbjct: 78 KGKPVRIMWSQ---RDPSLRKSGVGN-------IFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V ++N S+G+ + F T A++A +MNG L+ + V + + + +R +G
Sbjct: 128 CKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSR-KEREAELGA 185
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
K++ V++KN E +D+E LK F ++G + VK++ D++GKS+GFGF+ F ++
Sbjct: 186 RAKEFTN--VYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDHGKSRGFGFVSFERHED 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A+KA+ +MNG+ + + FV A+ K+ F ++K + + ++V NL
Sbjct: 244 AQKAVDDMNGKDLNGKAIFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 239 NINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
I++ + F FG+ITS+ ++ + K GF+ F P+ AT AV+ MNG + +KPL
Sbjct: 304 GIDDERLRKEFTPFGSITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Query: 295 KVTLSGTK 302
V L+ K
Sbjct: 364 YVALAQRK 371
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 86/279 (30%), Positives = 133/279 (47%), Gaps = 37/279 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KPV I + + P R VG +F+KNL +++D + L
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVG---------NIFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+GF+ F + +AAE+AI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N ++++ +E F ++G S +++
Sbjct: 178 EREAELGARAKEF-------------TNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMT 224
Query: 263 DKH-----IGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
D H GF+ F + A AV MNG K + V
Sbjct: 225 DDHGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFV 263
>gi|114682135|ref|XP_514668.2| PREDICTED: poly(A) binding protein, cytoplasmic 1-like isoform 2
[Pan troglodytes]
gi|397511247|ref|XP_003825989.1| PREDICTED: polyadenylate-binding protein 1-like [Pan paniscus]
Length = 614
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 95/311 (30%), Positives = 167/311 (53%), Gaps = 29/311 (9%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KG+ + W + D G R + N + + NLE S+DN+AL + F FG +
Sbjct: 78 KGQPIRIMWSQ---RDPGLRKSGVGN-------IFIKNLEDSIDNKALYDTFSTFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+VA +++ SRGF + F T A++A MNG L+ + V + + + +R +G
Sbjct: 128 CKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSR-REREAELGA 185
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
++ ++VKNL VDE+ L+ F +FG ++ VK++RD +G S+ FGF+ F ++
Sbjct: 186 RALEFTN--IYVKNLPVDVDEQGLQELFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEE 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLA--------EIVPGKKVFPKVKPPLLQPARKNKIFVAN 235
A+KA++ MNG+ + + A E+ K+ F ++K L+ + ++V N
Sbjct: 244 AQKAVVHMNGKEVSGRLLYAGRAQKRVERQNEL---KRRFEQMKQDRLRRYQGVNLYVKN 300
Query: 236 LPSNINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKS 291
L +I++ + + F+ +G ITS+ ++++ K GF+ F P+ AT AV+ MNG + +
Sbjct: 301 LDDSIDDDKLRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGT 360
Query: 292 KPLKVTLSGTK 302
KPL V L+ K
Sbjct: 361 KPLYVALAQRK 371
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 84/269 (31%), Positives = 133/269 (49%), Gaps = 37/269 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F G + +RV R+ S G+A I F PA+A++
Sbjct: 8 YPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN ++ +P+ I + + PG R VG +F+KNL +++D + L
Sbjct: 68 ALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVG---------NIFIKNLEDSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+ DE+G S+GFGF+ F +++AA++AI MNG ++ FV
Sbjct: 119 FSTFGNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRR 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ G + I+V NLP +++ +ELF++FG + S ++
Sbjct: 178 EREAEL--GARAL-----------EFTNIYVKNLPVDVDEQGLQELFSQFGKMLSVKVMR 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNG 286
D + GF+ F + A AV MNG
Sbjct: 225 DNSGHSRCFGFVNFEKHEEAQKAVVHMNG 253
>gi|397485813|ref|XP_003814033.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Pan paniscus]
Length = 427
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 87/270 (32%), Positives = 146/270 (54%), Gaps = 13/270 (4%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+DN+ L F FG + +V + + S+G+A + F + A +A EMNG
Sbjct: 159 IKNLDKSIDNKTLYEHFSAFGKILSSKVMSD-DQGSKGYAFVHFQNQSAADRAIEEMNGK 217
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ V FV ++ + K + +++KN +D+E LK F K+G +
Sbjct: 218 LLKGCKV---FVGRFKNRKDREAELRSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTL 274
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKK 213
VK++ D +GKSKGFGF+ F S++AA+KA+ EMNGR I FV A+ K+
Sbjct: 275 SVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQ 334
Query: 214 VFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGFI 269
+F ++K ++ + K+++ NL I++ + F+ FG+I+ ++ + K G I
Sbjct: 335 MFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEEGQSKGFGLI 394
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299
F P+ AT A++ MNG + SKPL + L+
Sbjct: 395 CFSSPEDATKAMTEMNGRILGSKPLSIALA 424
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 106/179 (59%), Gaps = 10/179 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+++ N +D++ L + F K+G V+V + + +S+GF + F++ AKKA EMN
Sbjct: 249 IYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMN 308
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKD--------KVFVKNLVETVDEEELK 148
G I + + + + K +R + +Q K++ K+++KNL +T+D+E+L+
Sbjct: 309 GRDINGQLIFVGRAQ-KKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLR 367
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
+ F FG+I VK++++E G+SKGFG I F S + A KA+ EMNGR++ ++LA+
Sbjct: 368 NEFSSFGSISRVKVMQEE-GQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSIALAQ 425
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 53/76 (69%), Gaps = 1/76 (1%)
Query: 36 ELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEM 95
+L++ NL+ ++D++ L NEF FG++ V+V + + +S+GF +I F++P +A KA EM
Sbjct: 351 KLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEEG-QSKGFGLICFSSPEDATKAMTEM 409
Query: 96 NGHLIGSKPVIITFVE 111
NG ++GSKP+ I +
Sbjct: 410 NGRILGSKPLSIALAQ 425
>gi|119596297|gb|EAW75891.1| hCG2019100, isoform CRA_e [Homo sapiens]
Length = 617
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 95/311 (30%), Positives = 167/311 (53%), Gaps = 29/311 (9%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KG+ + W + D G R + N + + NLE S+DN+AL + F FG +
Sbjct: 78 KGQPIRIMWSQ---RDPGLRKSGVGN-------IFIKNLEDSIDNKALYDTFSTFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+VA +++ SRGF + F T A++A MNG L+ + V + + + +R +G
Sbjct: 128 CKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSR-REREAELGA 185
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
++ ++VKNL VDE+ L+ F +FG ++ VK++RD +G S+ FGF+ F ++
Sbjct: 186 RALEFTN--IYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEE 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLA--------EIVPGKKVFPKVKPPLLQPARKNKIFVAN 235
A+KA++ MNG+ + + A E+ K+ F ++K L+ + ++V N
Sbjct: 244 AQKAVVHMNGKEVSGRLLYAGRAQKRVERQNEL---KRRFEQMKQDRLRRYQGVNLYVKN 300
Query: 236 LPSNINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKS 291
L +I++ + + F+ +G ITS+ ++++ K GF+ F P+ AT AV+ MNG + +
Sbjct: 301 LDDSIDDDKLRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGT 360
Query: 292 KPLKVTLSGTK 302
KPL V L+ K
Sbjct: 361 KPLYVALAQRK 371
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 132/269 (49%), Gaps = 37/269 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F G + +RV R+ S G+A I F PA+A++
Sbjct: 8 YPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN ++ +P+ I + + PG R VG +F+KNL +++D + L
Sbjct: 68 ALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVG---------NIFIKNLEDSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+ DE+G S+GFGF+ F +++AA++AI MNG ++ FV
Sbjct: 119 FSTFGNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRR 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ F I+V NLP +++ ++LF++FG + S ++
Sbjct: 178 EREAELGARALEF-------------TNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMR 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNG 286
D + GF+ F + A AV MNG
Sbjct: 225 DNSGHSRCFGFVNFEKHEEAQKAVVHMNG 253
>gi|125808454|ref|XP_001360757.1| GA18673 [Drosophila pseudoobscura pseudoobscura]
gi|54635929|gb|EAL25332.1| GA18673 [Drosophila pseudoobscura pseudoobscura]
Length = 640
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 94/276 (34%), Positives = 152/276 (55%), Gaps = 16/276 (5%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ +DN+A+ + F FG + +VA ++ S+G+ + F T A + +NG
Sbjct: 94 IKNLDKGIDNKAIYDTFSAFGNILSCKVAIDEKGNSKGYGFVHFETEEAANMSIDRVNGM 153
Query: 99 LIGSKPVII-TFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNI 157
L+ K V + F+ K +R K +G + K + V+VKN E D+E+LK F +G I
Sbjct: 154 LLNGKKVYVGKFIPRK--EREKELGEKAKLFTN--VYVKNFTEDFDDEKLKEFFEPYGKI 209
Query: 158 IEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGR-MIQHNSTFVSLAEIVPGKKVFP 216
K++ E+GKSKGFGF+ + + +AAE A+ +NG+ M + S +V+ A+ ++
Sbjct: 210 TSYKVMSKEDGKSKGFGFVAYETTEAAEAAVQALNGKDMGESKSLYVARAQKKAERQQEL 269
Query: 217 KVKPPLLQPARKNKIF-----VANLPSNINNSEFEELFARFGTITSSSLVSD-----KHI 266
K K L+ R + +F V NL I++ + F+ +GTITS+ +++D K
Sbjct: 270 KRKFEELKKKRHDSVFGVNLYVKNLDDTIDDERLRKDFSMYGTITSAKVMTDEEGRSKGF 329
Query: 267 GFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ FI P AT AV+ +NG V SKPL V L+ K
Sbjct: 330 GFVCFISPNEATCAVTELNGRVIGSKPLYVALAQRK 365
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 81/270 (30%), Positives = 135/270 (50%), Gaps = 25/270 (9%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L ++ L +F G + +RV R+ S G+A + F PA+A++A M
Sbjct: 4 LYVGDLHQDINEAGLFEKFSTAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTM 63
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI +KP+ I + + P R VG VF+KNL + +D + + F FG
Sbjct: 64 NFDLIRNKPIRIMWSQRDPSLRRSGVG---------NVFIKNLDKGIDNKAIYDTFSAFG 114
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ DE G SKG+GF+ F + +AA +I +NG ++ N V + + +P K+
Sbjct: 115 NILSCKVAIDEKGNSKGYGFVHFETEEAANMSIDRVNGMLL--NGKKVYVGKFIPRKERE 172
Query: 216 PKV--KPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS-----DKHIGF 268
++ K L ++V N + ++ + +E F +G ITS ++S K GF
Sbjct: 173 KELGEKAKLF-----TNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGF 227
Query: 269 IEFIMPKHATHAVSTMNG-HVFKSKPLKVT 297
+ + + A AV +NG + +SK L V
Sbjct: 228 VAYETTEAAEAAVQALNGKDMGESKSLYVA 257
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 94/179 (52%), Gaps = 8/179 (4%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
++V N D++ L F+ +G + +V ++ +S+GF + + T A+ A +N
Sbjct: 185 VYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAYETTEAAEAAVQALN 244
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVG---PEEKQYKKDKVF-----VKNLVETVDEEELK 148
G +G + K +R + + E K+ + D VF VKNL +T+D+E L+
Sbjct: 245 GKDMGESKSLYVARAQKKAERQQELKRKFEELKKKRHDSVFGVNLYVKNLDDTIDDERLR 304
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
F +G I K++ DE G+SKGFGF+ F S A A+ E+NGR+I +V+LA+
Sbjct: 305 KDFSMYGTITSAKVMTDEEGRSKGFGFVCFISPNEATCAVTELNGRVIGSKPLYVALAQ 363
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 53/88 (60%), Gaps = 1/88 (1%)
Query: 26 KENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTP 85
K ++ V+ N L+V NL+ ++D++ L +F +GT+ +V ++ S+GF + F +P
Sbjct: 279 KRHDSVFGVN-LYVKNLDDTIDDERLRKDFSMYGTITSAKVMTDEEGRSKGFGFVCFISP 337
Query: 86 AEAKKARVEMNGHLIGSKPVIITFVELK 113
EA A E+NG +IGSKP+ + + K
Sbjct: 338 NEATCAVTELNGRVIGSKPLYVALAQRK 365
>gi|119596296|gb|EAW75890.1| hCG2019100, isoform CRA_d [Homo sapiens]
Length = 639
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 95/311 (30%), Positives = 167/311 (53%), Gaps = 29/311 (9%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KG+ + W + D G R + N + + NLE S+DN+AL + F FG +
Sbjct: 78 KGQPIRIMWSQ---RDPGLRKSGVGN-------IFIKNLEDSIDNKALYDTFSTFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+VA +++ SRGF + F T A++A MNG L+ + V + + + +R +G
Sbjct: 128 CKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSR-REREAELGA 185
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
++ ++VKNL VDE+ L+ F +FG ++ VK++RD +G S+ FGF+ F ++
Sbjct: 186 RALEFTN--IYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEE 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLA--------EIVPGKKVFPKVKPPLLQPARKNKIFVAN 235
A+KA++ MNG+ + + A E+ K+ F ++K L+ + ++V N
Sbjct: 244 AQKAVVHMNGKEVSGRLLYAGRAQKRVERQNEL---KRRFEQMKQDRLRRYQGVNLYVKN 300
Query: 236 LPSNINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKS 291
L +I++ + + F+ +G ITS+ ++++ K GF+ F P+ AT AV+ MNG + +
Sbjct: 301 LDDSIDDDKLRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGT 360
Query: 292 KPLKVTLSGTK 302
KPL V L+ K
Sbjct: 361 KPLYVALAQRK 371
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 133/269 (49%), Gaps = 37/269 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F G + +RV R+ S G+A I F PA+A++
Sbjct: 8 YPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN ++ +P+ I + + PG R VG +F+KNL +++D + L
Sbjct: 68 ALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVG---------NIFIKNLEDSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+ DE+G S+GFGF+ F +++AA++AI MNG ++ FV
Sbjct: 119 FSTFGNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRR 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ G + I+V NLP +++ ++LF++FG + S ++
Sbjct: 178 EREAEL--GARAL-----------EFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMR 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNG 286
D + GF+ F + A AV MNG
Sbjct: 225 DNSGHSRCFGFVNFEKHEEAQKAVVHMNG 253
>gi|332820240|ref|XP_526690.3| PREDICTED: polyadenylate-binding protein 4-like [Pan troglodytes]
Length = 428
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 87/270 (32%), Positives = 146/270 (54%), Gaps = 13/270 (4%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+DN+ L F FG + +V + + S+G+A + F + A +A EMNG
Sbjct: 160 IKNLDKSIDNKTLYEHFSAFGKILSSKVMSD-DQGSKGYAFVHFQNQSAADRAIEEMNGK 218
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ V FV ++ + K + +++KN +D+E LK F K+G +
Sbjct: 219 LLKGCKV---FVGRFKNRKDREAELRSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTL 275
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKK 213
VK++ D +GKSKGFGF+ F S++AA+KA+ EMNGR I FV A+ K+
Sbjct: 276 SVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQ 335
Query: 214 VFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGFI 269
+F ++K ++ + K+++ NL I++ + F+ FG+I+ ++ + K G I
Sbjct: 336 MFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEEGQSKGFGLI 395
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299
F P+ AT A++ MNG + SKPL + L+
Sbjct: 396 CFSSPEDATKAMTEMNGRILGSKPLSIALA 425
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 106/179 (59%), Gaps = 10/179 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+++ N +D++ L + F K+G V+V + + +S+GF + F++ AKKA EMN
Sbjct: 250 IYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMN 309
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKD--------KVFVKNLVETVDEEELK 148
G I + + + + K +R + +Q K++ K+++KNL +T+D+E+L+
Sbjct: 310 GRDINGQLIFVGRAQ-KKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLR 368
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
+ F FG+I VK++++E G+SKGFG I F S + A KA+ EMNGR++ ++LA+
Sbjct: 369 NEFSSFGSISRVKVMQEE-GQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSIALAQ 426
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 53/76 (69%), Gaps = 1/76 (1%)
Query: 36 ELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEM 95
+L++ NL+ ++D++ L NEF FG++ V+V + + +S+GF +I F++P +A KA EM
Sbjct: 352 KLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEEG-QSKGFGLICFSSPEDATKAMTEM 410
Query: 96 NGHLIGSKPVIITFVE 111
NG ++GSKP+ I +
Sbjct: 411 NGRILGSKPLSIALAQ 426
>gi|426345476|ref|XP_004040437.1| PREDICTED: polyadenylate-binding protein 4-like [Gorilla gorilla
gorilla]
Length = 428
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 87/270 (32%), Positives = 146/270 (54%), Gaps = 13/270 (4%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+DN+ L F FG + +V + + S+G+A + F + A +A EMNG
Sbjct: 160 IKNLDKSIDNKTLYEHFSAFGKILSSKVMSD-DQGSKGYAFVHFQNQSAADRAIEEMNGK 218
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ V FV ++ + K + +++KN +D+E LK F K+G +
Sbjct: 219 LLKGCKV---FVGRFKNRKDREAELRSKASEFTNIYIKNFGGEMDDERLKDVFSKYGKTL 275
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKK 213
VK++ D +GKSKGFGF+ F S++AA+KA+ EMNGR I FV A+ K+
Sbjct: 276 SVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQ 335
Query: 214 VFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGFI 269
+F ++K ++ + K+++ NL I++ + F+ FG+I+ ++ + K G I
Sbjct: 336 MFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEEGQSKGFGLI 395
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299
F P+ AT A++ MNG + SKPL + L+
Sbjct: 396 CFSSPEDATKAMTEMNGRILGSKPLSIALA 425
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 106/179 (59%), Gaps = 10/179 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+++ N +D++ L + F K+G V+V + + +S+GF + F++ AKKA EMN
Sbjct: 250 IYIKNFGGEMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMN 309
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKD--------KVFVKNLVETVDEEELK 148
G I + + + + K +R + +Q K++ K+++KNL +T+D+E+L+
Sbjct: 310 GRDINGQLIFVGRAQ-KKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLR 368
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
+ F FG+I VK++++E G+SKGFG I F S + A KA+ EMNGR++ ++LA+
Sbjct: 369 NEFSSFGSISRVKVMQEE-GQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSIALAQ 426
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 53/76 (69%), Gaps = 1/76 (1%)
Query: 36 ELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEM 95
+L++ NL+ ++D++ L NEF FG++ V+V + + +S+GF +I F++P +A KA EM
Sbjct: 352 KLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEEG-QSKGFGLICFSSPEDATKAMTEM 410
Query: 96 NGHLIGSKPVIITFVE 111
NG ++GSKP+ I +
Sbjct: 411 NGRILGSKPLSIALAQ 426
>gi|432937502|ref|XP_004082431.1| PREDICTED: polyadenylate-binding protein 4-like [Oryzias latipes]
Length = 629
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 96/308 (31%), Positives = 168/308 (54%), Gaps = 23/308 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK + W + D R + N + + NL+ S+DN+AL + F FG +
Sbjct: 78 KGKPIRIMWSQ---RDPSLRKSGVGN-------VFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V ++N S+G+A + F T A +A +MNG L+ + V + + + +R +G
Sbjct: 128 CKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRK-EREAELGA 185
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
+ K++ V++KN + +++E+LK F K+G + VK++ D +GKS+GFGF+ F ++
Sbjct: 186 KAKEFTN--VYIKNFGDEMEDEQLKEMFEKYGKTLSVKVMTDSSGKSRGFGFVSFEKHED 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNK-----IFVANLPS 238
A KA+ E+NG + + FV A+ ++ K K LL+ R ++ +++ NL
Sbjct: 244 ANKAVEEINGTELNGKTVFVGRAQKKMERQAELKRKFELLKQERISRYQGVNLYIKNLDD 303
Query: 239 NINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
I++ + + F+ FG+ITS+ ++ + K GF+ F P+ AT AV+ MNG + SKPL
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPL 363
Query: 295 KVTLSGTK 302
V L+ K
Sbjct: 364 YVALAQRK 371
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 78/269 (28%), Positives = 129/269 (47%), Gaps = 37/269 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L P + L +F G + +RV R+ S G+A + F+ PA+A++
Sbjct: 8 YPMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN ++ KP+ I + + P R VG VF+KNL +++D + L
Sbjct: 68 ALDTMNFDVVKGKPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+ F+ F + AA++AI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N + + + +E+F ++G S +++
Sbjct: 178 EREAELGAKAKEF-------------TNVYIKNFGDEMEDEQLKEMFEKYGKTLSVKVMT 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNG 286
D + GF+ F + A AV +NG
Sbjct: 225 DSSGKSRGFGFVSFEKHEDANKAVEEING 253
>gi|156064711|ref|XP_001598277.1| hypothetical protein SS1G_00363 [Sclerotinia sclerotiorum 1980]
gi|154691225|gb|EDN90963.1| hypothetical protein SS1G_00363 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 784
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 92/270 (34%), Positives = 137/270 (50%), Gaps = 27/270 (10%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+PSV L F + G++ +RV R+ S G+A + +NT + +KA E+
Sbjct: 63 LYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAITRRSLGYAYVNYNTTVDGEKALEEL 122
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI +P I + + P R G VF+KNL +D + L F FG
Sbjct: 123 NYTLIKGRPCRIMWSQRDPALRKNGQG---------NVFIKNLDVAIDNKALHDTFAAFG 173
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKV- 214
NI+ K+ +DE+G SKG+GF+ + + +AA +AI +NG ++ FV +P K
Sbjct: 174 NILSCKVAQDESGASKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVFV--GHHIPKKDRQ 231
Query: 215 --FPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHI 266
F ++K A I+V N+P EF ELF +FG +TS+SL D +
Sbjct: 232 SKFEEMK------ANFTNIYVKNIPVEATEEEFRELFEKFGDVTSASLARDTESGKSRGF 285
Query: 267 GFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
GF+ FI +HA AV +NG FK + L V
Sbjct: 286 GFVNFINHEHAATAVDELNGKDFKGQDLYV 315
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 95/350 (27%), Positives = 160/350 (45%), Gaps = 64/350 (18%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KG+ W + D R N + N + + NL+ ++DN+AL + F FG +
Sbjct: 128 KGRPCRIMWSQ---RDPALRKNGQGN-------VFIKNLDVAIDNKALHDTFAAFGNILS 177
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+VA++++ S+G+ + + T A +A +NG L+ K V + K ++SK
Sbjct: 178 CKVAQDESGASKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVFVGHHIPKKDRQSKF--- 234
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRD-ENGKSKGFGFIQFFSYK 182
EE + ++VKN+ EEE + F KFG++ + RD E+GKS+GFGF+ F +++
Sbjct: 235 EEMKANFTNIYVKNIPVEATEEEFRELFEKFGDVTSASLARDTESGKSRGFGFVNFINHE 294
Query: 183 AAEKAIIEMNGRMIQHNSTFVSLAEIVPGK--KVFPKVKPPLLQPARKNK---IFVANLP 237
A A+ E+NG+ + +V A+ + ++ + ++ A K + ++V NL
Sbjct: 295 HAATAVDELNGKDFKGQDLYVGRAQKKHEREEELRRSYEAARMEKASKYQGVNLYVKNLD 354
Query: 238 SNINNSEFEELFARFGTITSSSLVSD---------------------------------- 263
I++ + ELFA FG ITS+ ++ D
Sbjct: 355 DEIDDEKLRELFAPFGAITSAKVMRDTPAETADAEDKKEKDEEKNKENKKEGEAETEEAS 414
Query: 264 -----------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
K GF+ F P AT AVS MN + +KPL V L+ K
Sbjct: 415 APKAKRPLGKSKGFGFVCFNNPDEATKAVSDMNQRMVSNKPLYVALAQRK 464
>gi|348517413|ref|XP_003446228.1| PREDICTED: polyadenylate-binding protein 4 [Oreochromis niloticus]
Length = 627
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 88/273 (32%), Positives = 153/273 (56%), Gaps = 13/273 (4%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+DN+AL + F FG + +V ++N S+G+A + F T A +A +MNG
Sbjct: 103 IKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGM 161
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ + V + + + +R +G + K++ V++KN + +D+E LK F K+G +
Sbjct: 162 LLNDRKVFVGRFKSRK-EREAELGAKAKEFTN--VYIKNFGDDMDDERLKEIFDKYGKTL 218
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKK 213
VK++ D +GKS+GFGF+ + ++ A KA+ EMNG + + FV A+ K+
Sbjct: 219 SVKVMTDPSGKSRGFGFVSYEKHEDANKAVEEMNGTELNGKTVFVGRAQKKMERQAELKR 278
Query: 214 VFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLV----SDKHIGFI 269
F ++K + + +++ NL I++ + + F+ FG+ITS+ ++ K GF+
Sbjct: 279 KFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEEGRSKGFGFV 338
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F P+ AT AV+ MNG + SKPL V L+ K
Sbjct: 339 CFSSPEEATKAVTEMNGRIVGSKPLYVALAQRK 371
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 78/269 (28%), Positives = 130/269 (48%), Gaps = 37/269 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L P + L +F G + +RV R+ S G+A + F+ PA+A++
Sbjct: 8 YPMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN ++ KP+ I + + P R VG VF+KNL +++D + L
Sbjct: 68 ALDTMNFDVVKGKPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+ F+ F + AA++AI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N ++++ +E+F ++G S +++
Sbjct: 178 EREAELGAKAKEF-------------TNVYIKNFGDDMDDERLKEIFDKYGKTLSVKVMT 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNG 286
D + GF+ + + A AV MNG
Sbjct: 225 DPSGKSRGFGFVSYEKHEDANKAVEEMNG 253
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L++ NL+ ++D++ L EF FG++ +V + S+GF + F++P EA KA
Sbjct: 291 YQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEEG-RSKGFGFVCFSSPEEATKA 349
Query: 92 RVEMNGHLIGSKPVIITFVELK 113
EMNG ++GSKP+ + + K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
>gi|82802755|gb|ABB92428.1| PABP3 [Pongo pygmaeus]
Length = 635
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 97/308 (31%), Positives = 167/308 (54%), Gaps = 23/308 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK + W + D R + N + V NL+ S++N+AL + FG +
Sbjct: 78 KGKPVRIMWSQ---HDPSLRKSGVGN-------IFVKNLDKSINNKALYDTVSAFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V ++N S+G+ + F T A++A +MNG L+ + V + + + +R +G
Sbjct: 128 CKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSR-KEREAELGA 185
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
+ K++ V++KN E +D+E LK F KFG + VK++ DE+GKSKGFGF+ F ++
Sbjct: 186 KAKEFPN--VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFEKHED 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A+KA+ EMNG+ + +V A+ K+ F ++K + + ++V NL
Sbjct: 244 AQKAVDEMNGKELSGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNLDD 303
Query: 239 NINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
+I++ + F+ FGTITS+ ++ + + GF+ F P+ AT AV+ MNG + +KPL
Sbjct: 304 DIDDERLRKAFSPFGTITSAKVMMEGGRSRGFGFVCFSSPEEATKAVTEMNGIIVATKPL 363
Query: 295 KVTLSGTK 302
V+L+ K
Sbjct: 364 YVSLAHRK 371
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 86/279 (30%), Positives = 132/279 (47%), Gaps = 37/279 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F G + +RV R+ S +A + F P +A+
Sbjct: 8 YPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRRSSNYAYVNFQHPKDAEH 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KPV I + + P R VG +FVKNL ++++ + L
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQHDPSLRKSGVG---------NIFVKNLDKSINNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
FGNI+ K+V DENG SKG+GF+ F +++AAE+AI +MNG ++ FV
Sbjct: 119 VSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K FP V ++ N ++++ ++LF +FG S +++
Sbjct: 178 EREAELGAKAKEFPNV-------------YIKNFGEDMDDERLKDLFGKFGPALSVKVMT 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
D K GF+ F + A AV MNG K + V
Sbjct: 225 DESGKSKGFGFVSFEKHEDAQKAVDEMNGKELSGKQIYV 263
Score = 42.4 bits (98), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTM 284
++V +L ++ + E F+ G I S + D + ++ F PK A HA+ TM
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRRSSNYAYVNFQHPKDAEHALDTM 72
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N V K KP+++ S P +
Sbjct: 73 NFDVIKGKPVRIMWSQHDPSL 93
>gi|147785105|emb|CAN75447.1| hypothetical protein VITISV_030926 [Vitis vinifera]
Length = 632
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 91/278 (32%), Positives = 151/278 (54%), Gaps = 22/278 (7%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+PS+DN+AL++ F FGT+ ++A + N +S+G+ + F A+ A +NG
Sbjct: 131 IKNLDPSIDNKALLDTFAAFGTVLSCKIALDNNGQSKGYGFVQFEQEEAAQNAIKRLNGM 190
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
LI K V + ++ +R+ G K V+VKNL ET +++LK+ F K+G+I
Sbjct: 191 LINDKQVYVGLF-VRHQERNXGNGSP----KFTNVYVKNLSETTTDDDLKNIFGKYGSIT 245
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNST-FVSLAEIVPGKKVFPK 217
++RD +G SK FGF+ F S +A A+ +NG + +V A+ ++ +
Sbjct: 246 SAVVMRDASGMSKCFGFVNFQSSDSAAAAVEHLNGATFNDDKVWYVGKAQRKSEREAELR 305
Query: 218 VKPPLLQPARKNK--------IFVANLPSNINNSEFEELFARFGTITSSSLVSD-----K 264
K + RKNK +++ NL ++N+ + ELF+ FGTITS ++ D K
Sbjct: 306 AK---FEQERKNKFEKFKGXNLYLKNLDDSVNDEKLXELFSEFGTITSCKVMLDPQGLSK 362
Query: 265 HIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ F+ P+ AT A++ MNG + KPL V ++ K
Sbjct: 363 GSGFVAFLTPEEATRALNVMNGKMIGRKPLYVAVAQRK 400
Score = 113 bits (283), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 74/264 (28%), Positives = 125/264 (47%), Gaps = 22/264 (8%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
+ L+V +L+ ++ L + F++ + +RV R++ S G+A + F +P +A
Sbjct: 36 FANASLYVGDLDTAIGEGQLYDLFQQVAPVLSIRVCRDQARRASLGYAYVNFASPQDATN 95
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A +N + KP+ I F P R VF+KNL ++D + L
Sbjct: 96 ALEHLNFTPLNGKPIRIMFSHRDPSIRKSGFA---------NVFIKNLDPSIDNKALLDT 146
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVP 210
F FG ++ KI D NG+SKG+GF+QF +AA+ AI +NG +I +V L V
Sbjct: 147 FAAFGTVLSCKIALDNNGQSKGYGFVQFEQEEAAQNAIKRLNGMLINDKQVYVGL--FVR 204
Query: 211 GKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KH 265
++ P + ++V NL + + + +F ++G+ITS+ ++ D K
Sbjct: 205 HQERNXGNGSP-----KFTNVYVKNLSETTTDDDLKNIFGKYGSITSAVVMRDASGMSKC 259
Query: 266 IGFIEFIMPKHATHAVSTMNGHVF 289
GF+ F A AV +NG F
Sbjct: 260 FGFVNFQSSDSAAAAVEHLNGATF 283
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 91/179 (50%), Gaps = 8/179 (4%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
++V NL + + L N F K+G++ V R+ + S+ F + F + A A +N
Sbjct: 220 VYVKNLSETTTDDDLKNIFGKYGSITSAVVMRDASGMSKCFGFVNFQSSDSAAAAVEHLN 279
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDK--------VFVKNLVETVDEEELK 148
G V + +R + + +Q +K+K +++KNL ++V++E+L
Sbjct: 280 GATFNDDKVWYVGKAQRKSEREAELRAKFEQERKNKFEKFKGXNLYLKNLDDSVNDEKLX 339
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
F +FG I K++ D G SKG GF+ F + + A +A+ MNG+MI +V++A+
Sbjct: 340 ELFSEFGTITSCKVMLDPQGLSKGSGFVAFLTPEEATRALNVMNGKMIGRKPLYVAVAQ 398
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 46/82 (56%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
+K L++ NL+ SV+++ L F +FGT+ +V + S+G + F TP EA +A
Sbjct: 319 FKGXNLYLKNLDDSVNDEKLXELFSEFGTITSCKVMLDPQGLSKGSGFVAFLTPEEATRA 378
Query: 92 RVEMNGHLIGSKPVIITFVELK 113
MNG +IG KP+ + + K
Sbjct: 379 LNVMNGKMIGRKPLYVAVAQRK 400
>gi|332231054|ref|XP_003264711.1| PREDICTED: polyadenylate-binding protein 4-like [Nomascus
leucogenys]
Length = 428
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 87/270 (32%), Positives = 146/270 (54%), Gaps = 13/270 (4%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+DN+ L F FG + +V + + S+G+A + F + A +A EMNG
Sbjct: 160 IKNLDKSIDNKTLYEHFSAFGKILSSKVMSD-DQGSKGYAFVHFQNQSAADRAIEEMNGK 218
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ V FV ++ + K + +++KN +D+E LK F K+G +
Sbjct: 219 LLKGCKV---FVGRFKNRKDREAELRSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTL 275
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKK 213
VK++ D +GKSKGFGF+ F S++AA+KA+ EMNGR I FV A+ K+
Sbjct: 276 SVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQ 335
Query: 214 VFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGFI 269
+F ++K ++ + K+++ NL I++ + F+ FG+I+ ++ + K G I
Sbjct: 336 MFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEEGQSKGFGLI 395
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299
F P+ AT A++ MNG + SKPL + L+
Sbjct: 396 CFSSPEDATKAMTEMNGRILGSKPLSIALA 425
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 106/179 (59%), Gaps = 10/179 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+++ N +D++ L + F K+G V+V + + +S+GF + F++ AKKA EMN
Sbjct: 250 IYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMN 309
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKD--------KVFVKNLVETVDEEELK 148
G I + + + + K +R + +Q K++ K+++KNL +T+D+E+L+
Sbjct: 310 GRDINGQLIFVGRAQ-KKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLR 368
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
+ F FG+I VK++++E G+SKGFG I F S + A KA+ EMNGR++ ++LA+
Sbjct: 369 NEFSSFGSISRVKVMQEE-GQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSIALAQ 426
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 53/76 (69%), Gaps = 1/76 (1%)
Query: 36 ELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEM 95
+L++ NL+ ++D++ L NEF FG++ V+V + + +S+GF +I F++P +A KA EM
Sbjct: 352 KLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEEG-QSKGFGLICFSSPEDATKAMTEM 410
Query: 96 NGHLIGSKPVIITFVE 111
NG ++GSKP+ I +
Sbjct: 411 NGRILGSKPLSIALAQ 426
>gi|149608633|ref|XP_001515603.1| PREDICTED: polyadenylate-binding protein 4 [Ornithorhynchus
anatinus]
Length = 630
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 96/308 (31%), Positives = 164/308 (53%), Gaps = 23/308 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK + W + D R + N + + NL+ S+DN+AL + F FG +
Sbjct: 78 KGKPIRIMWSQ---RDPSLRKSGVGN-------VFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V ++N S+G+A + F T A +A +MNG L+ + V + + + +R +G
Sbjct: 128 CKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSR-KEREAELGA 185
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
+ K++ V++KN + +D+E LK F K+G + VK++ D +GKSKGFGF+ F ++
Sbjct: 186 KAKEFTN--VYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPSGKSKGFGFVSFEKHED 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A +A+ +MNG+ I FV A+ K+ F ++K + + +++ NL
Sbjct: 244 ANQAVEDMNGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 239 NINNSEFEELFARFGTITSSSLV----SDKHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
I++ + + F+ FG+ITS+ ++ K GF+ F P+ AT AV+ MNG + SKPL
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLEEGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPL 363
Query: 295 KVTLSGTK 302
V L+ K
Sbjct: 364 YVALAQRK 371
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 130/269 (48%), Gaps = 37/269 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KP+ I + + P R VG VF+KNL +++D + L
Sbjct: 68 ALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+ F+ F + AA++AI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N ++++ +ELF+++G S +++
Sbjct: 178 EREAELGAKAKEF-------------TNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMT 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNG 286
D K GF+ F + A AV MNG
Sbjct: 225 DPSGKSKGFGFVSFEKHEDANQAVEDMNG 253
>gi|410904819|ref|XP_003965889.1| PREDICTED: polyadenylate-binding protein 1-like [Takifugu rubripes]
Length = 636
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 93/311 (29%), Positives = 166/311 (53%), Gaps = 29/311 (9%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KG+ L W + D R + N + + NL+ S+DN+AL + F FG +
Sbjct: 78 KGRPLRIMWSQ---RDPSLRKSGVGN-------IFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V ++N S+G+ + F T A++A +MNG L+ + V + + + +R +G
Sbjct: 128 CKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSR-KEREAELGA 185
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
+++ V++KN E +D+E+LK F K+G + ++++ D+ GKSKGFGF+ F ++
Sbjct: 186 RAREFTN--VYIKNFGEDMDDEKLKELFSKYGPALSIRVMTDDGGKSKGFGFVSFERHED 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLA--------EIVPGKKVFPKVKPPLLQPARKNKIFVAN 235
A+KA+ +MNG+ + +V A E+ K+ F ++K + + ++V N
Sbjct: 244 AQKAVDDMNGKELNGRQVYVGRAQKKGERQNEL---KRKFEQMKQDRMTRYQGVNLYVKN 300
Query: 236 LPSNINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKS 291
L +++ + F+ FGTITS+ ++ + K GF+ F P+ AT AV+ MNG + +
Sbjct: 301 LDDGLDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 292 KPLKVTLSGTK 302
KPL V L+ K
Sbjct: 361 KPLYVALAQRK 371
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 82/269 (30%), Positives = 134/269 (49%), Gaps = 37/269 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I +P+ I + + P R VG +F+KNL +++D + L
Sbjct: 68 ALDTMNFDVIKGRPLRIMWSQRDPSLRKSGVG---------NIFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+GF+ F +++AAE+AI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ + F +++ N ++++ + +ELF+++G S +++
Sbjct: 178 EREAELGARAREF-------------TNVYIKNFGEDMDDEKLKELFSKYGPALSIRVMT 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNG 286
D K GF+ F + A AV MNG
Sbjct: 225 DDGGKSKGFGFVSFERHEDAQKAVDDMNG 253
>gi|390460450|ref|XP_002745401.2| PREDICTED: polyadenylate-binding protein 4-like [Callithrix
jacchus]
Length = 384
Score = 144 bits (364), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 88/270 (32%), Positives = 146/270 (54%), Gaps = 13/270 (4%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+DN+ L F FG + +V + + S+G+A + F + A +A EMNG
Sbjct: 102 IKNLDKSIDNKTLYEHFSAFGKILSSKVMSD-DQGSKGYAFVHFQNQSAADRAIEEMNGK 160
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ V FV ++ + K + V++KN +D+E LK F K+G +
Sbjct: 161 LLQGCKV---FVGRFKSRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTL 217
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKK 213
VK++ D +GKSKGFGF+ F S++AA+KA+ EMNGR I FV+ A+ K+
Sbjct: 218 SVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVARAQKKVERQAELKQ 277
Query: 214 VFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGFI 269
+F ++K ++ + K++V NL I++ + F+ FG+I+ ++ + K G I
Sbjct: 278 MFEQLKKERIRGCQVVKLYVKNLDDTIDDEKLRNEFSSFGSISRVKVMQEEGQSKGFGLI 337
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299
F P+ A A++ MNG + SKPL + L+
Sbjct: 338 CFSSPEDALKAMTEMNGRILGSKPLSIALA 367
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 106/180 (58%), Gaps = 10/180 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+++ N +D++ L + F K+G V+V + + +S+GF + F++ AKKA EMN
Sbjct: 192 VYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMN 251
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKD--------KVFVKNLVETVDEEELK 148
G I + + + + K +R + +Q KK+ K++VKNL +T+D+E+L+
Sbjct: 252 GRDINGQLIFVARAQ-KKVERQAELKQMFEQLKKERIRGCQVVKLYVKNLDDTIDDEKLR 310
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEI 208
+ F FG+I VK++++E G+SKGFG I F S + A KA+ EMNGR++ ++LA+
Sbjct: 311 NEFSSFGSISRVKVMQEE-GQSKGFGLICFSSPEDALKAMTEMNGRILGSKPLSIALAQC 369
>gi|301763992|ref|XP_002917400.1| PREDICTED: polyadenylate-binding protein 1-like [Ailuropoda
melanoleuca]
Length = 611
Score = 144 bits (364), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 95/311 (30%), Positives = 165/311 (53%), Gaps = 29/311 (9%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KG+ + W + D G R + N + + NLE S+DN+AL + F FG +
Sbjct: 78 KGQPVRIMWSQ---RDPGLRKSGVGN-------IFIKNLEDSIDNKALYDTFSTFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V + + SRGF + F T A +A MNG L+ + V + + + +R +G
Sbjct: 128 CKVVCDDHG-SRGFGFVHFETHEAAHQAIATMNGMLLNDRKVFVGHFKSR-REREAELGA 185
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
++ ++VKNL VDE+ L+ F +FG ++ VK++RD+ G S+GFGF+ F ++
Sbjct: 186 RAMEFTN--IYVKNLHVDVDEQGLQDLFSQFGKMLSVKVMRDDIGHSRGFGFVNFEKHEE 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLA--------EIVPGKKVFPKVKPPLLQPARKNKIFVAN 235
A+KA+++MNG+ + +V A E+ K+ F ++K + ++V N
Sbjct: 244 AQKAVMDMNGKEVSGRLLYVGRAQKRVERQNEL---KRRFEQMKQDRATRYQGVNLYVKN 300
Query: 236 LPSNINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKS 291
L +I++ + + F+ +G ITS+ ++++ K GF+ F P+ AT AV+ MNG + +
Sbjct: 301 LDDSIDDEKLRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGT 360
Query: 292 KPLKVTLSGTK 302
KPL V L+ K
Sbjct: 361 KPLYVALAQRK 371
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 86/279 (30%), Positives = 134/279 (48%), Gaps = 37/279 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F G + +RV R+ S G+A I F PA+A++
Sbjct: 8 YPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I +PV I + + PG R VG +F+KNL +++D + L
Sbjct: 68 ALDTMNFEVIKGQPVRIMWSQRDPGLRKSGVG---------NIFIKNLEDSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V D++G S+GFGF+ F +++AA +AI MNG ++ FV
Sbjct: 119 FSTFGNILSCKVVCDDHG-SRGFGFVHFETHEAAHQAIATMNGMLLNDRKVFVGHFKSRR 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ F I+V NL +++ ++LF++FG + S ++
Sbjct: 178 EREAELGARAMEF-------------TNIYVKNLHVDVDEQGLQDLFSQFGKMLSVKVMR 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
D + GF+ F + A AV MNG + L V
Sbjct: 225 DDIGHSRGFGFVNFEKHEEAQKAVMDMNGKEVSGRLLYV 263
>gi|109120204|ref|XP_001091129.1| PREDICTED: polyadenylate-binding protein 1 isoform 2 [Macaca
mulatta]
Length = 637
Score = 144 bits (364), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 98/308 (31%), Positives = 165/308 (53%), Gaps = 23/308 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK + W + D RS N + V NL+ S++N+ L + FG +
Sbjct: 78 KGKPVRIMWSQ--RDPSLRRSGVGN--------IFVKNLDKSINNKVLYDTVSAFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V ++N S+G+ + F T A++A +MNG L+ + V + + + +R +G
Sbjct: 128 CKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGTLLNDRKVFVGRFKSR-KEREAELGA 185
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
+ K++ V++KN E +D+E LK F KFG + VK++ DE+GKSKGFGF+ F ++
Sbjct: 186 KAKEFPN--VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A+KA+ EMNG+ + +V A+ K+ F ++K + + ++V NL
Sbjct: 244 AQKAVDEMNGKELNGKHIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNLDD 303
Query: 239 NINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
+I++ + F+ FGTITS+ ++ + K GF+ F P+ AT AV+ MNG + +KPL
Sbjct: 304 DIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Query: 295 KVTLSGTK 302
V L+ K
Sbjct: 364 YVALAQRK 371
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 86/279 (30%), Positives = 134/279 (48%), Gaps = 37/279 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F + G + +RV R+ S +A + F P +A++
Sbjct: 8 YPTASLYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRSSSYAYVNFQHPKDAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KPV I + + P R VG +FVKNL ++++ + L
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRRSGVG---------NIFVKNLDKSINNKVLYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
FGNI+ K+V DENG SKG+GF+ F +++AAE+AI +MNG ++ FV
Sbjct: 119 VSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGTLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K FP V ++ N ++++ ++LF +FG S +++
Sbjct: 178 EREAELGAKAKEFPNV-------------YIKNFGEDMDDERLKDLFGKFGPALSVKVMT 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
D K GF+ F + A AV MNG K + V
Sbjct: 225 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYV 263
Score = 42.4 bits (98), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTM 284
++V +L ++ + E F+R G I S + D ++ F PK A A+ TM
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRSSSYAYVNFQHPKDAERALDTM 72
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N V K KP+++ S P +
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSL 93
>gi|82802759|gb|ABB92430.1| PABP3 [Chlorocebus sabaeus]
Length = 635
Score = 144 bits (364), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 98/308 (31%), Positives = 164/308 (53%), Gaps = 23/308 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK + W + D RS N + V NL+ S++N+ L + FG +
Sbjct: 78 KGKPVRIMWSQ--RDPSLRRSGVGN--------IFVKNLDKSINNKVLYDTASAFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V ++N S+G+ + F T A++A +MNG L+ + V + + + +R +G
Sbjct: 128 CKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSR-KEREAELGA 185
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
K++ V++KN E +D+E LK F KFG + VK++ DE+GKSKGFGF+ F ++
Sbjct: 186 RAKEFPN--VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A+KA+ EMNG+ + +V A+ K+ F ++K + + ++V NL
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNLDD 303
Query: 239 NINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
+I++ + F+ FGTITS+ ++ + K GF+ F P+ AT AV+ MNG + +KPL
Sbjct: 304 DIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Query: 295 KVTLSGTK 302
V L+ K
Sbjct: 364 YVALAQRK 371
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 85/279 (30%), Positives = 133/279 (47%), Gaps = 37/279 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F + G + +RV R+ +A + F P +A++
Sbjct: 8 YPTASLYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRYSSYAYVNFQHPKDAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KPV I + + P R VG +FVKNL ++++ + L
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRRSGVG---------NIFVKNLDKSINNKVLYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
FGNI+ K+V DENG SKG+GF+ F +++AAE+AI +MNG ++ FV
Sbjct: 119 ASAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K FP V ++ N ++++ ++LF +FG S +++
Sbjct: 178 EREAELGARAKEFPNV-------------YIKNFGEDMDDERLKDLFGKFGPALSVKVMT 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
D K GF+ F + A AV MNG K + V
Sbjct: 225 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTM 284
++V +L ++ + E F+R G I S + D ++ F PK A A+ TM
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRYSSYAYVNFQHPKDAERALDTM 72
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N V K KP+++ S P +
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSL 93
>gi|52346030|ref|NP_001005062.1| embryonic polyadenylate-binding protein [Xenopus (Silurana)
tropicalis]
gi|82235830|sp|Q6DEY7.1|EPAB_XENTR RecName: Full=Embryonic polyadenylate-binding protein;
Short=Embryonic poly(A)-binding protein; Short=ePABP
gi|49899948|gb|AAH76956.1| MGC89376 protein [Xenopus (Silurana) tropicalis]
Length = 629
Score = 144 bits (364), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 94/311 (30%), Positives = 164/311 (52%), Gaps = 29/311 (9%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KG+ + W + D G R + N + + NL+ S+DN+AL + F FG +
Sbjct: 78 KGRPIRIMWSQ---RDPGLRKSGVGN-------VFIKNLDESIDNKALYDTFSAFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V +++ SRG+ + F T A +A MNG L+ + V FV +R + +
Sbjct: 128 CKVVCDEHG-SRGYGFVHFETQEAANRAIQTMNGMLLNDRKV---FVGHFKSRRERELEY 183
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
K + V++KN E +D++ L+ F FGN + VK++ D+ G+S+GFGF+ + +++
Sbjct: 184 GAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDTGRSRGFGFVNYGNHEE 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLA--------EIVPGKKVFPKVKPPLLQPARKNKIFVAN 235
A+KA+ EMNG+ + +V A E+ K+ F ++K + + ++V N
Sbjct: 244 AQKAVSEMNGKEVNGRMIYVGRAQKRIERQGEL---KRKFEQIKQERINRYQGVNLYVKN 300
Query: 236 LPSNINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKS 291
L I++ + F+ +GTITS+ ++++ K GF+ F P+ AT AV+ MNG + +
Sbjct: 301 LDDGIDDDRLRKEFSPYGTITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVST 360
Query: 292 KPLKVTLSGTK 302
KPL V L+ K
Sbjct: 361 KPLYVALAQRK 371
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 83/267 (31%), Positives = 129/267 (48%), Gaps = 33/267 (12%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F G + +RV R+ S G+A I F PA+A++
Sbjct: 8 YPLASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I +P+ I + + PG R VG VF+KNL E++D + L
Sbjct: 68 ALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVG---------NVFIKNLDESIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DE+G S+G+GF+ F + +AA +AI MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDEHG-SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRR 177
Query: 206 -AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD- 263
E+ G KV +++ N ++++ E+F+ FG S ++ D
Sbjct: 178 ERELEYGAKVM-----------EFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDD 226
Query: 264 ----KHIGFIEFIMPKHATHAVSTMNG 286
+ GF+ + + A AVS MNG
Sbjct: 227 TGRSRGFGFVNYGNHEEAQKAVSEMNG 253
Score = 40.8 bits (94), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGF--IEFIMPKHATHAVSTM 284
++V +L ++ + E F+ G I S + D + +G+ I F P A A+ TM
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTM 72
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N V K +P+++ S PG+
Sbjct: 73 NFEVIKGRPIRIMWSQRDPGL 93
>gi|281345572|gb|EFB21156.1| hypothetical protein PANDA_005635 [Ailuropoda melanoleuca]
Length = 605
Score = 144 bits (364), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 95/311 (30%), Positives = 165/311 (53%), Gaps = 29/311 (9%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KG+ + W + D G R + N + + NLE S+DN+AL + F FG +
Sbjct: 78 KGQPVRIMWSQ---RDPGLRKSGVGN-------IFIKNLEDSIDNKALYDTFSTFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V + + SRGF + F T A +A MNG L+ + V + + + +R +G
Sbjct: 128 CKVVCDDHG-SRGFGFVHFETHEAAHQAIATMNGMLLNDRKVFVGHFKSR-REREAELGA 185
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
++ ++VKNL VDE+ L+ F +FG ++ VK++RD+ G S+GFGF+ F ++
Sbjct: 186 RAMEFTN--IYVKNLHVDVDEQGLQDLFSQFGKMLSVKVMRDDIGHSRGFGFVNFEKHEE 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLA--------EIVPGKKVFPKVKPPLLQPARKNKIFVAN 235
A+KA+++MNG+ + +V A E+ K+ F ++K + ++V N
Sbjct: 244 AQKAVMDMNGKEVSGRLLYVGRAQKRVERQNEL---KRRFEQMKQDRATRYQGVNLYVKN 300
Query: 236 LPSNINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKS 291
L +I++ + + F+ +G ITS+ ++++ K GF+ F P+ AT AV+ MNG + +
Sbjct: 301 LDDSIDDEKLRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGT 360
Query: 292 KPLKVTLSGTK 302
KPL V L+ K
Sbjct: 361 KPLYVALAQRK 371
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 86/279 (30%), Positives = 134/279 (48%), Gaps = 37/279 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F G + +RV R+ S G+A I F PA+A++
Sbjct: 8 YPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I +PV I + + PG R VG +F+KNL +++D + L
Sbjct: 68 ALDTMNFEVIKGQPVRIMWSQRDPGLRKSGVG---------NIFIKNLEDSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V D++G S+GFGF+ F +++AA +AI MNG ++ FV
Sbjct: 119 FSTFGNILSCKVVCDDHG-SRGFGFVHFETHEAAHQAIATMNGMLLNDRKVFVGHFKSRR 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ F I+V NL +++ ++LF++FG + S ++
Sbjct: 178 EREAELGARAMEF-------------TNIYVKNLHVDVDEQGLQDLFSQFGKMLSVKVMR 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
D + GF+ F + A AV MNG + L V
Sbjct: 225 DDIGHSRGFGFVNFEKHEEAQKAVMDMNGKEVSGRLLYV 263
>gi|57997079|emb|CAB66834.2| hypothetical protein [Homo sapiens]
Length = 631
Score = 144 bits (364), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 97/308 (31%), Positives = 163/308 (52%), Gaps = 23/308 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK + W + D R + N + V NL+ S++N+AL + FG +
Sbjct: 78 KGKPVRIMWSQ---RDPSLRKSGVGN-------IFVKNLDKSINNKALYDTVSAFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
V ++N S+G+ + F T A++A +MNG L+ + V + + + +R +G
Sbjct: 128 CNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSR-KEREAELGA 185
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
K++ V++KN E +D+E LK F KFG + V+++ DE+GKSKGFGF+ F ++
Sbjct: 186 RAKEFPN--VYIKNFGEDMDDERLKDLFGKFGPALSVELMTDESGKSKGFGFVSFERHED 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A+KA+ EMNG+ + +V A+ K+ F ++K + + ++V NL
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDD 303
Query: 239 NINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
I++ + F+ FGTITS+ ++ + K GF+ F P+ AT AV+ MNG + +KPL
Sbjct: 304 GIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Query: 295 KVTLSGTK 302
V L+ K
Sbjct: 364 YVALAQRK 371
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 84/279 (30%), Positives = 130/279 (46%), Gaps = 37/279 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F G + +R+ R+ S +A + F +A+
Sbjct: 8 YPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEH 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KPV I + + P R VG +FVKNL ++++ + L
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVG---------NIFVKNLDKSINNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
FGNI+ +V DENG SKG+GF+ F +++AAE+AI +MNG ++ FV
Sbjct: 119 VSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K FP V ++ N ++++ ++LF +FG S L++
Sbjct: 178 EREAELGARAKEFPNV-------------YIKNFGEDMDDERLKDLFGKFGPALSVELMT 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
D K GF+ F + A AV MNG K + V
Sbjct: 225 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Score = 39.3 bits (90), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTM 284
++V +L ++ + E F+ G I S + D + ++ F K A HA+ TM
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDTM 72
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N V K KP+++ S P +
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSL 93
>gi|13540314|gb|AAK29408.1|AF338225_1 embryonic poly(A) binding protein [Xenopus laevis]
Length = 629
Score = 144 bits (364), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 93/308 (30%), Positives = 163/308 (52%), Gaps = 23/308 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KG+ + W + D G R + N + + NL+ S+DN+AL + F FG +
Sbjct: 78 KGRPIRIMWSQ---RDPGLRKSGVGN-------VFIKNLDESIDNKALYDTFSAFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V +++ SRG+ + F T A +A MNG L+ + V FV +R + +
Sbjct: 128 CKVVCDEHG-SRGYGFVHFETHEAANRAIQTMNGMLLNDRKV---FVGHFKSRRERELEY 183
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
K + V++KN E +D++ L+ F FGN + VK++ D++G+S+GFGF+ + +++
Sbjct: 184 GAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDSGRSRGFGFVNYGNHEE 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A+KA+ EMNG+ + +V A+ K+ F ++K + + ++V NL
Sbjct: 244 AQKAVSEMNGKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQGVNLYVKNLDD 303
Query: 239 NINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
I++ + F +GTITS+ ++++ K GF+ F P+ AT AV+ MNG + +KPL
Sbjct: 304 GIDDDRLRKEFLPYGTITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPL 363
Query: 295 KVTLSGTK 302
V L+ K
Sbjct: 364 YVALAQRK 371
Score = 123 bits (309), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 81/267 (30%), Positives = 129/267 (48%), Gaps = 33/267 (12%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKK 90
Y L++ +L P V L +F G + +RV R+ S +A I F PA+A++
Sbjct: 8 YPLASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I +P+ I + + PG R VG VF+KNL E++D + L
Sbjct: 68 ALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVG---------NVFIKNLDESIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DE+G S+G+GF+ F +++AA +AI MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDEHG-SRGYGFVHFETHEAANRAIQTMNGMLLNDRKVFVGHFKSRR 177
Query: 206 -AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD- 263
E+ G KV +++ N ++++ E+F+ FG S ++ D
Sbjct: 178 ERELEYGAKVM-----------EFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDD 226
Query: 264 ----KHIGFIEFIMPKHATHAVSTMNG 286
+ GF+ + + A AVS MNG
Sbjct: 227 SGRSRGFGFVNYGNHEEAQKAVSEMNG 253
>gi|357628251|gb|EHJ77641.1| poly A binding protein [Danaus plexippus]
Length = 601
Score = 144 bits (364), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 91/275 (33%), Positives = 153/275 (55%), Gaps = 15/275 (5%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ ++DN+A+ + F FG + +VA+++N S+G+ + F T A K+ ++NG
Sbjct: 94 IKNLDKAIDNKAMYDTFSAFGNILSCKVAQDENGASKGYGFVHFETEEAANKSIEKVNGM 153
Query: 99 LIGSKPVII-TFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNI 157
L+ K V + F+ K +R K +G + K + V+VKN E +E L+ F K+G I
Sbjct: 154 LLNGKKVYVGRFIPRK--EREKELGEKAKLFTN--VYVKNFGEDFSDEMLRDMFEKYGRI 209
Query: 158 IEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGR-MIQHNSTFVSLAEIVPG----- 211
K++ E+G S+GFGF+ F AAE+A +E+NG+ +++ +V A+
Sbjct: 210 TSHKVMYKEDGSSRGFGFVAFEDPDAAERACLELNGKELVEGKPLYVGRAQKKAERQKEL 269
Query: 212 KKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIG 267
K+ F ++K L + ++V NL I++ + FA FGTITS+ ++ + K G
Sbjct: 270 KRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFG 329
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F+ F P+ AT AV+ MNG + +KPL V L+ K
Sbjct: 330 FVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 364
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 79/269 (29%), Positives = 135/269 (50%), Gaps = 25/269 (9%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L + L +F G + +RV R+ S G+A + F P++A++A M
Sbjct: 4 LYVGDLHSDITEAMLFEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPSDAERALDTM 63
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N +I +P+ I + + P R VG VF+KNL + +D + + F FG
Sbjct: 64 NFDMIKGRPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKAIDNKAMYDTFSAFG 114
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ +DENG SKG+GF+ F + +AA K+I ++NG ++ N V + +P K+
Sbjct: 115 NILSCKVAQDENGASKGYGFVHFETEEAANKSIEKVNGMLL--NGKKVYVGRFIPRKERE 172
Query: 216 PKV--KPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLV-----SDKHIGF 268
++ K L ++V N + ++ ++F ++G ITS ++ S + GF
Sbjct: 173 KELGEKAKLF-----TNVYVKNFGEDFSDEMLRDMFEKYGRITSHKVMYKEDGSSRGFGF 227
Query: 269 IEFIMPKHATHAVSTMNG-HVFKSKPLKV 296
+ F P A A +NG + + KPL V
Sbjct: 228 VAFEDPDAAERACLELNGKELVEGKPLYV 256
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 104/180 (57%), Gaps = 11/180 (6%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
++V N ++ L + F+K+G + +V ++ SRGF + F P A++A +E+N
Sbjct: 185 VYVKNFGEDFSDEMLRDMFEKYGRITSHKVMYKEDGSSRGFGFVAFEDPDAAERACLELN 244
Query: 97 G-HLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKV--------FVKNLVETVDEEEL 147
G L+ KP+ + + K +R K + + +Q K +++ +VKNL +T+D+E L
Sbjct: 245 GKELVEGKPLYVGRAQ-KKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERL 303
Query: 148 KSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
+ F FG I K++ E+G+SKGFGF+ F S + A KA+ EMNGR++ +V+LA+
Sbjct: 304 RKEFAPFGTITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 362
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L+V NL+ ++D++ L EF FGT+ +V ++ S+GF + F++P EA KA
Sbjct: 284 YQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML-EDGRSKGFGFVCFSSPEEATKA 342
Query: 92 RVEMNGHLIGSKPVIITFVELK 113
EMNG ++G+KP+ + + K
Sbjct: 343 VTEMNGRIVGTKPLYVALAQRK 364
>gi|297674344|ref|XP_002815190.1| PREDICTED: polyadenylate-binding protein 4-like [Pongo abelii]
Length = 428
Score = 144 bits (364), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 87/270 (32%), Positives = 145/270 (53%), Gaps = 13/270 (4%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+DN+ L F FG + +V + + S+G+A + F + A +A EMNG
Sbjct: 160 IKNLDKSIDNKTLYEHFSAFGKILSSKVMSD-DQGSKGYAFVHFQNQSAADRAIEEMNGK 218
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ V FV ++ + K + +++KN +D+E LK F K+G +
Sbjct: 219 LLKGCKV---FVGRFKNRKDREAELRSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTL 275
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKK 213
VK++ D +GKSKGFGF+ F S++AA+KA+ EMNGR I FV A+ K+
Sbjct: 276 SVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQ 335
Query: 214 VFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGFI 269
+F ++K + + K+++ NL I++ + F+ FG+I+ ++ + K G I
Sbjct: 336 MFEQLKRERICGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEEGQSKGFGLI 395
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299
F P+ AT A++ MNG + SKPL + L+
Sbjct: 396 CFSSPEDATKAMTEMNGRILGSKPLSIALA 425
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 106/179 (59%), Gaps = 10/179 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+++ N +D++ L + F K+G V+V + + +S+GF + F++ AKKA EMN
Sbjct: 250 IYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMN 309
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKD--------KVFVKNLVETVDEEELK 148
G I + + + + K +R + +Q K++ K+++KNL +T+D+E+L+
Sbjct: 310 GRDINGQLIFVGRAQ-KKVERQAELKQMFEQLKRERICGCQGVKLYIKNLDDTIDDEKLR 368
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
+ F FG+I VK++++E G+SKGFG I F S + A KA+ EMNGR++ ++LA+
Sbjct: 369 NEFSSFGSISRVKVMQEE-GQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSIALAQ 426
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 53/76 (69%), Gaps = 1/76 (1%)
Query: 36 ELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEM 95
+L++ NL+ ++D++ L NEF FG++ V+V + + +S+GF +I F++P +A KA EM
Sbjct: 352 KLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEEG-QSKGFGLICFSSPEDATKAMTEM 410
Query: 96 NGHLIGSKPVIITFVE 111
NG ++GSKP+ I +
Sbjct: 411 NGRILGSKPLSIALAQ 426
>gi|383417509|gb|AFH31968.1| polyadenylate-binding protein 1 [Macaca mulatta]
Length = 456
Score = 144 bits (364), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 90/275 (32%), Positives = 153/275 (55%), Gaps = 16/275 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S+DN+AL + F FG + +V ++N S+G+ + F T A++A +MN
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 159
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G L+ + V + + + +R +G K++ V++KN E +D+E LK F G
Sbjct: 160 GMLLNDRKVFVGRFKSR-KEREAELGARAKEFTN--VYIKNFGEDMDDERLKDLF---GP 213
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPG 211
+ VK++ DE+GKSKGFGF+ F ++ A+KA+ EMNG+ + +V A+
Sbjct: 214 ALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTEL 273
Query: 212 KKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIG 267
K+ F ++K + + ++V NL I++ + F+ FGTITS+ ++ + K G
Sbjct: 274 KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFG 333
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F+ F P+ AT AV+ MNG + +KPL V L+ K
Sbjct: 334 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 368
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 86/279 (30%), Positives = 132/279 (47%), Gaps = 40/279 (14%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KPV I + + P R VG +F+KNL +++D + L
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVG---------NIFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+GF+ F + +AAE+AI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N ++++ ++L FG S +++
Sbjct: 178 EREAELGARAKEF-------------TNVYIKNFGEDMDDERLKDL---FGPALSVKVMT 221
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
D K GF+ F + A AV MNG K + V
Sbjct: 222 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 260
>gi|195123564|ref|XP_002006275.1| GI18654 [Drosophila mojavensis]
gi|193911343|gb|EDW10210.1| GI18654 [Drosophila mojavensis]
Length = 645
Score = 144 bits (364), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 93/276 (33%), Positives = 153/276 (55%), Gaps = 16/276 (5%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ ++DN+A+ + F FG + +VA ++ S+G+ + F T A + ++NG
Sbjct: 94 IKNLDKAIDNKAIYDTFSAFGNILSCKVATDEKGTSKGYGFVHFETEEAANTSIDKVNGM 153
Query: 99 LIGSKPVII-TFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNI 157
L+ K V + F+ K +R K +G + K + V+VKN E D+E+LK F +G I
Sbjct: 154 LLNGKKVYVGKFIPRK--EREKELGEKAKLFTN--VYVKNFTEDFDDEKLKEFFEPYGKI 209
Query: 158 IEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGR-MIQHNSTFVSLAEIVPGKKVFP 216
K++ E+GKSKGFGF+ + + +AAE A+ +NG+ M + +V+ A+ ++
Sbjct: 210 TSYKVMSKEDGKSKGFGFVAYETTEAAEAAVQALNGKDMGDGKTLYVARAQKKAERQQEL 269
Query: 217 KVKPPLLQPARKNKIF-----VANLPSNINNSEFEELFARFGTITSSSLVSD-----KHI 266
K K L+ R +F V NL +I++ + F+ +GTITS+ +++D K
Sbjct: 270 KRKFEELKKKRHESVFGVNLYVKNLDDSIDDERLRKEFSLYGTITSAKVMTDEEGRSKGF 329
Query: 267 GFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ FI P AT AV+ +NG V SKPL V L+ K
Sbjct: 330 GFVCFISPNEATCAVTELNGRVIGSKPLYVALAQRK 365
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/258 (29%), Positives = 129/258 (50%), Gaps = 24/258 (9%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L ++ L +F G + +RV R+ S G+A + F PA+A++A M
Sbjct: 4 LYVGDLHQDINEAGLFEKFSSAGPVLSIRVCRDVVTRRSLGYAYVNFQQPADAERALDTM 63
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI KP+ I + + P R VG VF+KNL + +D + + F FG
Sbjct: 64 NFDLIRDKPIRIMWSQRDPSLRRSGVG---------NVFIKNLDKAIDNKAIYDTFSAFG 114
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ DE G SKG+GF+ F + +AA +I ++NG ++ N V + + +P K+
Sbjct: 115 NILSCKVATDEKGTSKGYGFVHFETEEAANTSIDKVNGMLL--NGKKVYVGKFIPRKERE 172
Query: 216 PKV--KPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS-----DKHIGF 268
++ K L ++V N + ++ + +E F +G ITS ++S K GF
Sbjct: 173 KELGEKAKLF-----TNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGF 227
Query: 269 IEFIMPKHATHAVSTMNG 286
+ + + A AV +NG
Sbjct: 228 VAYETTEAAEAAVQALNG 245
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 95/179 (53%), Gaps = 8/179 (4%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
++V N D++ L F+ +G + +V ++ +S+GF + + T A+ A +N
Sbjct: 185 VYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAYETTEAAEAAVQALN 244
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDK--------VFVKNLVETVDEEELK 148
G +G + K +R + + + ++ KK + ++VKNL +++D+E L+
Sbjct: 245 GKDMGDGKTLYVARAQKKAERQQELKRKFEELKKKRHESVFGVNLYVKNLDDSIDDERLR 304
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
F +G I K++ DE G+SKGFGF+ F S A A+ E+NGR+I +V+LA+
Sbjct: 305 KEFSLYGTITSAKVMTDEEGRSKGFGFVCFISPNEATCAVTELNGRVIGSKPLYVALAQ 363
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 47/77 (61%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L+V NL+ S+D++ L EF +GT+ +V ++ S+GF + F +P EA A E+N
Sbjct: 289 LYVKNLDDSIDDERLRKEFSLYGTITSAKVMTDEEGRSKGFGFVCFISPNEATCAVTELN 348
Query: 97 GHLIGSKPVIITFVELK 113
G +IGSKP+ + + K
Sbjct: 349 GRVIGSKPLYVALAQRK 365
>gi|148227710|ref|NP_001085351.1| embryonic polyadenylate-binding protein B [Xenopus laevis]
gi|82236619|sp|Q6GR16.1|EPABB_XENLA RecName: Full=Embryonic polyadenylate-binding protein B;
Short=Embryonic poly(A)-binding protein B; Short=ePAB-B;
Short=ePABP-B; AltName: Full=XePABP-B
gi|49257242|gb|AAH71118.1| MGC81363 protein [Xenopus laevis]
Length = 629
Score = 144 bits (363), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 95/311 (30%), Positives = 163/311 (52%), Gaps = 29/311 (9%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KG+ + W + D G R + N + + NL+ S+DN+AL + F FG +
Sbjct: 78 KGRPIRIMWSQ---RDPGLRKSGVGN-------VFIKNLDDSIDNKALYDTFSAFGDILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V ++ SRG+ + F T A +A MNG L+ + V FV +R + +
Sbjct: 128 CKVVCDEYG-SRGYGFVHFETQEAANRAIQTMNGMLLNDRKV---FVGHFKSRRERELEY 183
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
K + V++KN E +D++ LK F FGN + VK++ D +G+S+GFGF+ + +++
Sbjct: 184 GAKVMEFTNVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDNSGRSRGFGFVNYGNHEE 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLA--------EIVPGKKVFPKVKPPLLQPARKNKIFVAN 235
A+KA+ EMNG+ + +V A E+ K+ F ++K + + ++V N
Sbjct: 244 AQKAVTEMNGKEVNGRMVYVGRAQKRIERQGEL---KRKFEQIKQERINRYQGVNLYVKN 300
Query: 236 LPSNINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKS 291
L I++ + F+ +GTITS+ ++++ K GF+ F P+ AT AV+ MNG + +
Sbjct: 301 LDDGIDDDRLRKEFSPYGTITSTKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVST 360
Query: 292 KPLKVTLSGTK 302
KPL V L+ K
Sbjct: 361 KPLYVALAQRK 371
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 79/267 (29%), Positives = 129/267 (48%), Gaps = 33/267 (12%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKK 90
Y L++ +L P V L +F G + +RV R+ S G+A I F PA+A++
Sbjct: 8 YPLASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I +P+ I + + PG R VG VF+KNL +++D + L
Sbjct: 68 ALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVG---------NVFIKNLDDSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FG+I+ K+V DE G S+G+GF+ F + +AA +AI MNG ++ FV
Sbjct: 119 FSAFGDILSCKVVCDEYG-SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRR 177
Query: 206 -AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD- 263
E+ G KV +++ N ++++ +E+F+ FG S ++ D
Sbjct: 178 ERELEYGAKVM-----------EFTNVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDN 226
Query: 264 ----KHIGFIEFIMPKHATHAVSTMNG 286
+ GF+ + + A AV+ MNG
Sbjct: 227 SGRSRGFGFVNYGNHEEAQKAVTEMNG 253
>gi|19526272|gb|AAL89666.1|AF411956_7 polyA-binding protein [Takifugu rubripes]
Length = 623
Score = 144 bits (363), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 88/273 (32%), Positives = 154/273 (56%), Gaps = 13/273 (4%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+DN+AL + F FG + +V ++N S+G+A + F T A +A +MNG
Sbjct: 103 IKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGM 161
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ + V + + + +R +G + K++ V++KN + +D+E LK F K+G +
Sbjct: 162 LLNDRKVFVGRFKSR-KEREAELGAKAKEFTN--VYIKNFGDDMDDERLKELFDKYGKTL 218
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKV 218
VK++ D GKS+GFGF+ + ++ A KA+ +MNG + + FV A+ ++ K
Sbjct: 219 SVKVMMDPTGKSRGFGFVSYEKHEDANKAVEDMNGTELNGKTVFVGRAQKKNERQAELKR 278
Query: 219 KPPLLQPARKNK-----IFVANLPSNINNSEFEELFARFGTITSSSLV----SDKHIGFI 269
K +L+ R ++ +++ NL I++ + + F+ FG+ITS+ ++ K GF+
Sbjct: 279 KFEMLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEEGRSKGFGFV 338
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F P+ AT AV+ MNG + SKPL V L+ K
Sbjct: 339 CFSSPEEATKAVTEMNGRIVGSKPLYVALAQRK 371
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 79/269 (29%), Positives = 129/269 (47%), Gaps = 37/269 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L P + L +F G + +RV R+ S G+A + F+ PA+A++
Sbjct: 8 YPMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN ++ KP+ I + + P R VG VF+KNL +++D + L
Sbjct: 68 ALDTMNFDVVKGKPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+ F+ F + AA++AI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N ++++ +ELF ++G S ++
Sbjct: 178 EREAELGAKAKEF-------------TNVYIKNFGDDMDDERLKELFDKYGKTLSVKVMM 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNG 286
D + GF+ + + A AV MNG
Sbjct: 225 DPTGKSRGFGFVSYEKHEDANKAVEDMNG 253
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L++ NL+ ++D++ L EF FG++ +V + S+GF + F++P EA KA
Sbjct: 291 YQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEEG-RSKGFGFVCFSSPEEATKA 349
Query: 92 RVEMNGHLIGSKPVIITFVELK 113
EMNG ++GSKP+ + + K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
>gi|426247620|ref|XP_004023599.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Ovis aries]
Length = 383
Score = 144 bits (363), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 86/270 (31%), Positives = 146/270 (54%), Gaps = 13/270 (4%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+DN+ L F FG + +V + + SRG+A + F A +A EMNG
Sbjct: 97 IKNLDRSIDNKTLYEHFSAFGKILSSKVMSDDHG-SRGYAFVHFQNQIAADRAIEEMNGT 155
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ + FV ++ + + K ++ V++KN + +D+E LK F K+G +
Sbjct: 156 LLKDCRL---FVGRFKSRKDREAEFQNKAHEFTNVYIKNFGDEMDDERLKEVFSKYGKTL 212
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKK 213
VK++ D +GKSKGFGF+ F S++AA++A+ EMNG+ I FV A+ K+
Sbjct: 213 SVKVMTDSSGKSKGFGFVSFDSHEAAKRAVEEMNGKDINGQLLFVGRAQKKAERQAELKQ 272
Query: 214 VFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGFI 269
+F ++K + R K+++ NL I++ + F+ FG+I+ ++ + K G I
Sbjct: 273 MFEQLKHERFRRCRGAKLYIKNLDETIDDEKLRREFSSFGSISRVKVMQEEGRSKGFGLI 332
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299
F + AT A++ MNG + SKPL + L+
Sbjct: 333 CFSSAEEATKAMTEMNGRILGSKPLNIALA 362
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 67/215 (31%), Positives = 119/215 (55%), Gaps = 14/215 (6%)
Query: 22 ARSNKE---NNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFA 78
+R ++E NK ++ +++ N +D++ L F K+G V+V + + +S+GF
Sbjct: 169 SRKDREAEFQNKAHEFTNVYIKNFGDEMDDERLKEVFSKYGKTLSVKVMTDSSGKSKGFG 228
Query: 79 IIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKD------- 131
+ F++ AK+A EMNG I + + + + K +R + +Q K +
Sbjct: 229 FVSFDSHEAAKRAVEEMNGKDINGQLLFVGRAQ-KKAERQAELKQMFEQLKHERFRRCRG 287
Query: 132 -KVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIE 190
K+++KNL ET+D+E+L+ F FG+I VK++++E G+SKGFG I F S + A KA+ E
Sbjct: 288 AKLYIKNLDETIDDEKLRREFSSFGSISRVKVMQEE-GRSKGFGLICFSSAEEATKAMTE 346
Query: 191 MNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQP 225
MNGR++ ++LA+ +K F + +LQ
Sbjct: 347 MNGRILGSKPLNIALAQKPXERKTFC-ISQCVLQT 380
>gi|154322853|ref|XP_001560741.1| hypothetical protein BC1G_00769 [Botryotinia fuckeliana B05.10]
gi|347837080|emb|CCD51652.1| similar to polyadenylate-binding protein [Botryotinia fuckeliana]
Length = 790
Score = 144 bits (363), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 90/269 (33%), Positives = 137/269 (50%), Gaps = 25/269 (9%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+ SV L F + G++ +RV R+ + S G+A + +NT A+ +KA E+
Sbjct: 63 LYVGELDTSVTEAMLFELFSQIGSVASIRVCRDAISRRSLGYAYVNYNTTADGEKALEEL 122
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI +P I + + P R G VF+KNL +D + L F FG
Sbjct: 123 NYTLIKGRPCRIMWSQRDPALRKNGQG---------NVFIKNLDVAIDNKALHDTFAAFG 173
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ +DE+G SKG+GF+ + + +AA +AI +NG ++ FV G +
Sbjct: 174 NILSCKVAQDESGASKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVFV-------GHHIP 226
Query: 216 PKVKPPLLQPARKN--KIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIG 267
K + + + N I+V N+P EF ELF +FG +TS+SL D + G
Sbjct: 227 KKDRQSKFEEMKANFTNIYVKNIPVEATEEEFRELFEKFGDVTSASLARDAETGKSRGFG 286
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
F+ FI +HA AV +NG FK + L V
Sbjct: 287 FVNFINHEHAATAVDELNGKDFKGQDLYV 315
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 76/266 (28%), Positives = 138/266 (51%), Gaps = 19/266 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KG+ W + D R N + N + + NL+ ++DN+AL + F FG +
Sbjct: 128 KGRPCRIMWSQ---RDPALRKNGQGN-------VFIKNLDVAIDNKALHDTFAAFGNILS 177
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+VA++++ S+G+ + + T A +A +NG L+ K V + K ++SK
Sbjct: 178 CKVAQDESGASKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVFVGHHIPKKDRQSKF--- 234
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRD-ENGKSKGFGFIQFFSYK 182
EE + ++VKN+ EEE + F KFG++ + RD E GKS+GFGF+ F +++
Sbjct: 235 EEMKANFTNIYVKNIPVEATEEEFRELFEKFGDVTSASLARDAETGKSRGFGFVNFINHE 294
Query: 183 AAEKAIIEMNGRMIQHNSTFVSLAEIVPGK--KVFPKVKPPLLQPARKNK---IFVANLP 237
A A+ E+NG+ + +V A+ + ++ + ++ A K + ++V NL
Sbjct: 295 HAATAVDELNGKDFKGQDLYVGRAQKKHEREEELRRSYEAARIEKASKYQGVNLYVKNLD 354
Query: 238 SNINNSEFEELFARFGTITSSSLVSD 263
+I++ + ELF FG+ITS+ ++ D
Sbjct: 355 DDIDDEKLRELFQSFGSITSAKVMRD 380
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 95/228 (41%), Gaps = 57/228 (25%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKKARVEM 95
++V N+ + F+KFG + +AR+ + +SRGF + F A A E+
Sbjct: 244 IYVKNIPVEATEEEFRELFEKFGDVTSASLARDAETGKSRGFGFVNFINHEHAATAVDEL 303
Query: 96 NGHLIGSKPVIITFVELKPGQ-----RSKPVGPEEK--QYKKDKVFVKNLVETVDEEELK 148
NG + + + + K + RS EK +Y+ ++VKNL + +D+E+L+
Sbjct: 304 NGKDFKGQDLYVGRAQKKHEREEELRRSYEAARIEKASKYQGVNLYVKNLDDDIDDEKLR 363
Query: 149 SHFIKFGNIIEVKIVRDEN----------------------------------------- 167
F FG+I K++RD
Sbjct: 364 ELFQSFGSITSAKVMRDTPAETAEAEEKKEKDEEKNKENKDTKETKETKKEGEAETEEAS 423
Query: 168 --------GKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
GKSKGFGF+ F + A KA+ +MN RM+ + +V+LA+
Sbjct: 424 APKAKRSLGKSKGFGFVCFNNPDEATKAVSDMNQRMVNNKPLYVALAQ 471
Score = 40.8 bits (94), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 29/137 (21%), Positives = 52/137 (37%), Gaps = 49/137 (35%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDE------------------ 73
Y+ L+V NL+ +D++ L F+ FG++ +V R+ E
Sbjct: 343 YQGVNLYVKNLDDDIDDEKLRELFQSFGSITSAKVMRDTPAETAEAEEKKEKDEEKNKEN 402
Query: 74 -------------------------------SRGFAIIVFNTPAEAKKARVEMNGHLIGS 102
S+GF + FN P EA KA +MN ++ +
Sbjct: 403 KDTKETKETKKEGEAETEEASAPKAKRSLGKSKGFGFVCFNNPDEATKAVSDMNQRMVNN 462
Query: 103 KPVIITFVELKPGQRSK 119
KP+ + + K ++S+
Sbjct: 463 KPLYVALAQRKDVRKSQ 479
>gi|355754577|gb|EHH58478.1| hypothetical protein EGM_08341 [Macaca fascicularis]
Length = 637
Score = 144 bits (363), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 98/308 (31%), Positives = 164/308 (53%), Gaps = 23/308 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK + W + D RS N + V NL+ S++N+ L + FG +
Sbjct: 78 KGKPVRIMWSQ--RDPSLRRSGVGN--------IFVKNLDKSINNKVLYDTVSAFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V ++N S+G+ + F T A++A +MNG L+ + V + + + +R +G
Sbjct: 128 CKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGTLLNDRKVFVGRFKSR-KEREAELGA 185
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
+ K++ V++KN E +D+E LK F KFG + VK++ DE+GKSKGFGF+ F ++
Sbjct: 186 KAKEFPN--VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A KA+ EMNG+ + +V A+ K+ F ++K + + ++V NL
Sbjct: 244 ARKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNLDD 303
Query: 239 NINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
+I++ + F+ FGTITS+ ++ + K GF+ F P+ AT AV+ MNG + +KPL
Sbjct: 304 DIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Query: 295 KVTLSGTK 302
V L+ K
Sbjct: 364 YVALAQRK 371
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 86/279 (30%), Positives = 134/279 (48%), Gaps = 37/279 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F + G + +RV R+ S +A + F P +A++
Sbjct: 8 YPTASLYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRSSSYAYVNFQHPKDAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KPV I + + P R VG +FVKNL ++++ + L
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRRSGVG---------NIFVKNLDKSINNKVLYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
FGNI+ K+V DENG SKG+GF+ F +++AAE+AI +MNG ++ FV
Sbjct: 119 VSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGTLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K FP V ++ N ++++ ++LF +FG S +++
Sbjct: 178 EREAELGAKAKEFPNV-------------YIKNFGEDMDDERLKDLFGKFGPALSVKVMT 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
D K GF+ F + A AV MNG K + V
Sbjct: 225 DESGKSKGFGFVSFERHEDARKAVDEMNGKELNGKQIYV 263
Score = 42.4 bits (98), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTM 284
++V +L ++ + E F+R G I S + D ++ F PK A A+ TM
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRSSSYAYVNFQHPKDAERALDTM 72
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N V K KP+++ S P +
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSL 93
>gi|402901594|ref|XP_003913731.1| PREDICTED: polyadenylate-binding protein 1-like [Papio anubis]
Length = 636
Score = 144 bits (363), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 98/308 (31%), Positives = 165/308 (53%), Gaps = 23/308 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK + W + D RS N + V NL+ S++N+ L + FG +
Sbjct: 78 KGKPVRIMWSQ--RDPSLRRSGVGN--------IFVKNLDKSINNKVLYDTVSAFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V ++N S+G+ + F T A++A +MNG L+ + V + + + +R +G
Sbjct: 128 CKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGTLLNDRKVFVGRFKSR-KEREAELGA 185
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
+ K++ V++KN E +D+E LK F KFG + VK++ DE+GKSKGFGF+ F ++
Sbjct: 186 KVKEFPN--VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A+KA+ EMNG+ + +V A+ K+ F ++K + + ++V NL
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNLDD 303
Query: 239 NINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
+I++ + F+ FGTITS+ ++ + K GF+ F P+ AT AV+ MNG + +KPL
Sbjct: 304 DIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Query: 295 KVTLSGTK 302
V L+ K
Sbjct: 364 YVALAQRK 371
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 86/279 (30%), Positives = 133/279 (47%), Gaps = 37/279 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F + G + +RV R+ S +A + F P +A+
Sbjct: 8 YPTASLYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRSSSYAYVNFQHPKDAEH 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KPV I + + P R VG +FVKNL ++++ + L
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRRSGVG---------NIFVKNLDKSINNKVLYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
FGNI+ K+V DENG SKG+GF+ F +++AAE+AI +MNG ++ FV
Sbjct: 119 VSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGTLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K FP V ++ N ++++ ++LF +FG S +++
Sbjct: 178 EREAELGAKVKEFPNV-------------YIKNFGEDMDDERLKDLFGKFGPALSVKVMT 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
D K GF+ F + A AV MNG K + V
Sbjct: 225 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Score = 45.8 bits (107), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTM 284
++V +L ++ + E F+R G I S + D ++ F PK A HA+ TM
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRSSSYAYVNFQHPKDAEHALDTM 72
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N V K KP+++ S P +
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSL 93
>gi|410898224|ref|XP_003962598.1| PREDICTED: polyadenylate-binding protein 4-like [Takifugu rubripes]
Length = 653
Score = 144 bits (363), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 95/308 (30%), Positives = 165/308 (53%), Gaps = 23/308 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK + W + D R + N + + NL+ S+DN+AL + F FG +
Sbjct: 78 KGKPIRIMWSQ---RDPSLRKSGVGN-------VFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V ++N S+G+A + F T A +A +MNG L+ + V + + + +R +G
Sbjct: 128 CKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSR-KEREAELGA 185
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
+ K++ V++KN + +D+E LK F K+G + VK++ D GKS+GFGF+ + ++
Sbjct: 186 KAKEFTN--VYIKNFGDDMDDERLKELFDKYGKTLSVKVMMDPTGKSRGFGFVSYEKHED 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNK-----IFVANLPS 238
A KA+ +MNG + + FV A+ ++ K K +L+ R ++ +++ NL
Sbjct: 244 ANKAVEDMNGTELNGKTVFVGRAQKKNERQAELKRKFEMLKQERISRYQGVNLYIKNLDD 303
Query: 239 NINNSEFEELFARFGTITSSSLV----SDKHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
I++ + + F+ FG+ITS+ ++ K GF+ F P+ AT AV+ MNG + SKPL
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLEEGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPL 363
Query: 295 KVTLSGTK 302
V L+ K
Sbjct: 364 YVALAQRK 371
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 79/269 (29%), Positives = 129/269 (47%), Gaps = 37/269 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L P + L +F G + +RV R+ S G+A + F+ PA+A++
Sbjct: 8 YPMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN ++ KP+ I + + P R VG VF+KNL +++D + L
Sbjct: 68 ALDTMNFDVVKGKPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+ F+ F + AA++AI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N ++++ +ELF ++G S ++
Sbjct: 178 EREAELGAKAKEF-------------TNVYIKNFGDDMDDERLKELFDKYGKTLSVKVMM 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNG 286
D + GF+ + + A AV MNG
Sbjct: 225 DPTGKSRGFGFVSYEKHEDANKAVEDMNG 253
>gi|148227542|ref|NP_001082094.1| embryonic polyadenylate-binding protein A [Xenopus laevis]
gi|94711253|sp|Q98SP8.2|EPABA_XENLA RecName: Full=Embryonic polyadenylate-binding protein A;
Short=Embryonic poly(A)-binding protein A; Short=ePAB-A;
Short=ePABP-A; AltName: Full=XePABP-A
gi|51258324|gb|AAH80020.1| EPAB protein [Xenopus laevis]
Length = 629
Score = 144 bits (363), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 93/308 (30%), Positives = 163/308 (52%), Gaps = 23/308 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KG+ + W + D G R + N + + NL+ S+DN+AL + F FG +
Sbjct: 78 KGRPIRIMWSQ---RDPGLRKSGVGN-------VFIKNLDESIDNKALYDTFSAFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V +++ SRG+ + F T A +A MNG L+ + V FV +R + +
Sbjct: 128 CKVVCDEHG-SRGYGFVHFETHEAANRAIQTMNGMLLNDRKV---FVGHFKSRRERELEY 183
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
K + V++KN E +D++ L+ F FGN + VK++ D++G+S+GFGF+ + +++
Sbjct: 184 GAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDSGRSRGFGFVNYGNHEE 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A+KA+ EMNG+ + +V A+ K+ F ++K + + ++V NL
Sbjct: 244 AQKAVSEMNGKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQGVNLYVKNLDD 303
Query: 239 NINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
I++ + F +GTITS+ ++++ K GF+ F P+ AT AV+ MNG + +KPL
Sbjct: 304 GIDDDRLRKEFLPYGTITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPL 363
Query: 295 KVTLSGTK 302
V L+ K
Sbjct: 364 YVALAQRK 371
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 81/267 (30%), Positives = 129/267 (48%), Gaps = 33/267 (12%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKK 90
Y L++ +L P V L +F G + +RV R+ S +A I F PA+A++
Sbjct: 8 YPLASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I +P+ I + + PG R VG VF+KNL E++D + L
Sbjct: 68 ALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVG---------NVFIKNLDESIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DE+G S+G+GF+ F +++AA +AI MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDEHG-SRGYGFVHFETHEAANRAIQTMNGMLLNDRKVFVGHFKSRR 177
Query: 206 -AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD- 263
E+ G KV +++ N ++++ E+F+ FG S ++ D
Sbjct: 178 ERELEYGAKVM-----------EFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDD 226
Query: 264 ----KHIGFIEFIMPKHATHAVSTMNG 286
+ GF+ + + A AVS MNG
Sbjct: 227 SGRSRGFGFVNYGNHEEAQKAVSEMNG 253
>gi|126330207|ref|XP_001365338.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Monodelphis
domestica]
Length = 614
Score = 144 bits (363), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 97/308 (31%), Positives = 163/308 (52%), Gaps = 23/308 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK + W + D R + N + + NL+ S+DN+AL + F FG +
Sbjct: 78 KGKPIRIMWSQ---RDPSLRKSGVGN-------VFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V ++N S+G+A + F T A +A +MNG L+ + V + + + +R +G
Sbjct: 128 CKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSR-KEREAELGA 185
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
+ K++ V++KN + +D+ LK F K+G + VK++ D +GKSKGFGF+ F ++
Sbjct: 186 KAKEFTN--VYIKNFGDDMDDGRLKELFSKYGKTLSVKVMTDPSGKSKGFGFVSFEKHED 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A KA+ EMNG+ I FV A+ K+ F ++K + + +++ NL
Sbjct: 244 ANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 239 NINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
I++ + + F+ FG+ITS+ ++ + K GF+ F P AT AV+ MNG + SKPL
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPDEATKAVTEMNGRIVGSKPL 363
Query: 295 KVTLSGTK 302
V L+ K
Sbjct: 364 YVALAQRK 371
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 82/269 (30%), Positives = 129/269 (47%), Gaps = 37/269 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KP+ I + + P R VG VF+KNL +++D + L
Sbjct: 68 ALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+ F+ F + AA++AI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N ++++ +ELF+++G S +++
Sbjct: 178 EREAELGAKAKEF-------------TNVYIKNFGDDMDDGRLKELFSKYGKTLSVKVMT 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNG 286
D K GF+ F + A AV MNG
Sbjct: 225 DPSGKSKGFGFVSFEKHEDANKAVEEMNG 253
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITS----SSLVSDKHIGF--IEFIMPKHATHAVSTM 284
++V +L S++ + E F+ G + S +++ + +G+ + F P A A+ TM
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N V K KP+++ S P +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSL 93
>gi|302565150|ref|NP_001181379.1| polyadenylate-binding protein 1-like [Macaca mulatta]
Length = 614
Score = 144 bits (363), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 94/311 (30%), Positives = 166/311 (53%), Gaps = 29/311 (9%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KG+ + W + D G R + N + + NLE S+DN+AL + F FG +
Sbjct: 78 KGQPIRIMWSQ---RDPGLRKSGVGN-------IFIKNLEDSIDNKALYDTFSTFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V +++ SRGF + F T A++A MNG L+ + V + + + +R +G
Sbjct: 128 CKVVCDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSR-REREAELGA 185
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
++ ++VKNL VDE+ L+ F +FG ++ VK++RD +G S+ FGF+ F ++
Sbjct: 186 RALEFTN--IYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEE 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLA--------EIVPGKKVFPKVKPPLLQPARKNKIFVAN 235
A+KA++ MNG+ + + A E+ K+ F ++K L+ + ++V N
Sbjct: 244 AQKAVVHMNGKEVSGRLLYAGRAQKRVERQNEL---KRRFEQMKQDRLRRYQGVNLYVKN 300
Query: 236 LPSNINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKS 291
L +I++ + + F+ +G ITS+ ++++ K GF+ F P+ AT AV+ MNG + +
Sbjct: 301 LDDSIDDDKLRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGT 360
Query: 292 KPLKVTLSGTK 302
KPL V L+ K
Sbjct: 361 KPLYVALAQRK 371
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 84/269 (31%), Positives = 134/269 (49%), Gaps = 37/269 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F G + +RV R+ S G+A I F PA+A++
Sbjct: 8 YPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN ++ +P+ I + + PG R VG +F+KNL +++D + L
Sbjct: 68 ALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVG---------NIFIKNLEDSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DE+G S+GFGF+ F +++AA++AI MNG ++ FV
Sbjct: 119 FSTFGNILSCKVVCDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRR 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ G + I+V NLP +++ ++LF++FG + S ++
Sbjct: 178 EREAEL--GARAL-----------EFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMR 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNG 286
D + GF+ F + A AV MNG
Sbjct: 225 DNSGHSRCFGFVNFEKHEEAQKAVVHMNG 253
>gi|402882426|ref|XP_003904744.1| PREDICTED: polyadenylate-binding protein 1-like [Papio anubis]
Length = 614
Score = 144 bits (363), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 94/311 (30%), Positives = 166/311 (53%), Gaps = 29/311 (9%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KG+ + W + D G R + N + + NLE S+DN+AL + F FG +
Sbjct: 78 KGQPIRIMWSQ---RDPGLRKSGVGN-------IFIKNLEDSIDNKALYDTFSTFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V +++ SRGF + F T A++A MNG L+ + V + + + +R +G
Sbjct: 128 CKVVCDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSR-REREAELGA 185
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
++ ++VKNL VDE+ L+ F +FG ++ VK++RD +G S+ FGF+ F ++
Sbjct: 186 RALEFTN--IYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEE 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLA--------EIVPGKKVFPKVKPPLLQPARKNKIFVAN 235
A+KA++ MNG+ + + A E+ K+ F ++K L+ + ++V N
Sbjct: 244 AQKAVVHMNGKEVSGRLLYAGRAQKRVERQNEL---KRRFEQMKQDRLRRYQGVNLYVKN 300
Query: 236 LPSNINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKS 291
L +I++ + + F+ +G ITS+ ++++ K GF+ F P+ AT AV+ MNG + +
Sbjct: 301 LDDSIDDDKLRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGT 360
Query: 292 KPLKVTLSGTK 302
KPL V L+ K
Sbjct: 361 KPLYVALAQRK 371
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 84/269 (31%), Positives = 134/269 (49%), Gaps = 37/269 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F G + +RV R+ S G+A I F PA+A++
Sbjct: 8 YPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN ++ +P+ I + + PG R VG +F+KNL +++D + L
Sbjct: 68 ALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVG---------NIFIKNLEDSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DE+G S+GFGF+ F +++AA++AI MNG ++ FV
Sbjct: 119 FSTFGNILSCKVVCDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRR 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ G + I+V NLP +++ ++LF++FG + S ++
Sbjct: 178 EREAEL--GARAL-----------EFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMR 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNG 286
D + GF+ F + A AV MNG
Sbjct: 225 DNSGHSRCFGFVNFEKHEEAQKAVVHMNG 253
>gi|13435438|gb|AAH04587.1| Pabpc1 protein [Mus musculus]
Length = 527
Score = 144 bits (363), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 89/266 (33%), Positives = 149/266 (56%), Gaps = 13/266 (4%)
Query: 46 VDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPV 105
+DN+AL + F FG + +V ++N S+G+ + F T A++A +MNG L+ + V
Sbjct: 1 IDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKV 59
Query: 106 IITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRD 165
+ + + +R +G K++ V++KN E +D+E LK F KFG + VK++ D
Sbjct: 60 FVGRFKSR-KEREAELGARAKEF--TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD 116
Query: 166 ENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKP 220
E+GKSKGFGF+ F ++ A+KA+ EMNG+ + +V A+ K+ F ++K
Sbjct: 117 ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ 176
Query: 221 PLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKH 276
+ + ++V NL I++ + F+ FGTITS+ ++ + K GF+ F P+
Sbjct: 177 DRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEE 236
Query: 277 ATHAVSTMNGHVFKSKPLKVTLSGTK 302
AT AV+ MNG + +KPL V L+ K
Sbjct: 237 ATKAVTEMNGRIVATKPLYVALAQRK 262
Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 75/250 (30%), Positives = 124/250 (49%), Gaps = 36/250 (14%)
Query: 21 GARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAII 80
GAR+ KE VY + N +D++ L F KFG V+V +++ +S+GF +
Sbjct: 75 GARA-KEFTNVY------IKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFV 127
Query: 81 VFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKV------- 133
F +A+KA EMNG + K + + + K +R + + +Q K+D++
Sbjct: 128 SFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK-VERQTELKRKFEQMKQDRITRYQGVN 186
Query: 134 -FVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMN 192
+VKNL + +D+E L+ F FG I K++ E G+SKGFGF+ F S + A KA+ EMN
Sbjct: 187 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMN 245
Query: 193 GRMIQHNSTFVSLAEIVPGKKVF-----------------PKVKPPLLQPARKNKIFVAN 235
GR++ +V+LA+ ++ P + P QPA + F+A
Sbjct: 246 GRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINP--YQPAPPSGYFMAA 303
Query: 236 LPSNINNSEF 245
+P N + +
Sbjct: 304 IPQTQNRAAY 313
>gi|126320658|ref|XP_001364500.1| PREDICTED: polyadenylate-binding protein 4-like [Monodelphis
domestica]
Length = 630
Score = 144 bits (363), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 97/308 (31%), Positives = 162/308 (52%), Gaps = 23/308 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK + W + D R + N + + NL+ S+DN+AL + F FG +
Sbjct: 78 KGKPIRIMWSQ---RDPSLRKSGVGN-------VFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V ++N S+G+A + F T A +A +MNG L+ + V + + + +R +G
Sbjct: 128 CKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSR-KEREAELGA 185
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
+ K++ V++KN + +D+ LK F K+G + VK++ D +GKSKGFGF+ F ++
Sbjct: 186 KAKEFTN--VYIKNFGDDMDDGRLKELFSKYGKTLSVKVMTDPSGKSKGFGFVSFEKHED 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A KA+ EMNG+ I FV A+ K+ F ++K + + +++ NL
Sbjct: 244 ANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 239 NINNSEFEELFARFGTITSSSLV----SDKHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
I++ + + F+ FG+ITS+ ++ K GF+ F P AT AV+ MNG + SKPL
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPDEATKAVTEMNGRIVGSKPL 363
Query: 295 KVTLSGTK 302
V L+ K
Sbjct: 364 YVALAQRK 371
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 82/269 (30%), Positives = 129/269 (47%), Gaps = 37/269 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KP+ I + + P R VG VF+KNL +++D + L
Sbjct: 68 ALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+ F+ F + AA++AI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N ++++ +ELF+++G S +++
Sbjct: 178 EREAELGAKAKEF-------------TNVYIKNFGDDMDDGRLKELFSKYGKTLSVKVMT 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNG 286
D K GF+ F + A AV MNG
Sbjct: 225 DPSGKSKGFGFVSFEKHEDANKAVEEMNG 253
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITS----SSLVSDKHIGF--IEFIMPKHATHAVSTM 284
++V +L S++ + E F+ G + S +++ + +G+ + F P A A+ TM
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N V K KP+++ S P +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSL 93
>gi|126330205|ref|XP_001365269.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Monodelphis
domestica]
Length = 630
Score = 144 bits (362), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 97/308 (31%), Positives = 162/308 (52%), Gaps = 23/308 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK + W + D R + N + + NL+ S+DN+AL + F FG +
Sbjct: 78 KGKPIRIMWSQ---RDPSLRKSGVGN-------VFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V ++N S+G+A + F T A +A +MNG L+ + V + + + +R +G
Sbjct: 128 CKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSR-KEREAELGA 185
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
+ K++ V++KN + +D+ LK F K+G + VK++ D +GKSKGFGF+ F ++
Sbjct: 186 KAKEFTN--VYIKNFGDDMDDGRLKELFSKYGKTLSVKVMTDPSGKSKGFGFVSFEKHED 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A KA+ EMNG+ I FV A+ K+ F ++K + + +++ NL
Sbjct: 244 ANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 239 NINNSEFEELFARFGTITSSSLV----SDKHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
I++ + + F+ FG+ITS+ ++ K GF+ F P AT AV+ MNG + SKPL
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPDEATKAVTEMNGRIVGSKPL 363
Query: 295 KVTLSGTK 302
V L+ K
Sbjct: 364 YVALAQRK 371
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 82/269 (30%), Positives = 129/269 (47%), Gaps = 37/269 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KP+ I + + P R VG VF+KNL +++D + L
Sbjct: 68 ALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+ F+ F + AA++AI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N ++++ +ELF+++G S +++
Sbjct: 178 EREAELGAKAKEF-------------TNVYIKNFGDDMDDGRLKELFSKYGKTLSVKVMT 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNG 286
D K GF+ F + A AV MNG
Sbjct: 225 DPSGKSKGFGFVSFEKHEDANKAVEEMNG 253
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITS----SSLVSDKHIGF--IEFIMPKHATHAVSTM 284
++V +L S++ + E F+ G + S +++ + +G+ + F P A A+ TM
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N V K KP+++ S P +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSL 93
>gi|355563109|gb|EHH19671.1| Polyadenylate-binding protein 1-like protein [Macaca mulatta]
Length = 614
Score = 144 bits (362), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 94/311 (30%), Positives = 166/311 (53%), Gaps = 29/311 (9%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KG+ + W + D G R + N + + NLE S+DN+AL + F FG +
Sbjct: 78 KGQPIRIMWSQ---RDPGLRKSGVGN-------IFIKNLEDSIDNKALYDTFSTFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V +++ SRGF + F T A++A MNG L+ + V + + + +R +G
Sbjct: 128 CKVVCDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSR-REREAELGA 185
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
++ ++VKNL VDE+ L+ F +FG ++ VK++RD +G S+ FGF+ F ++
Sbjct: 186 RALEFTN--IYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEE 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLA--------EIVPGKKVFPKVKPPLLQPARKNKIFVAN 235
A+KA++ MNG+ + + A E+ K+ F ++K L+ + ++V N
Sbjct: 244 AQKAVVHMNGKEVSGRLLYAGRAQKRVERQNEL---KRRFEQMKQDRLRRYQGVNLYVKN 300
Query: 236 LPSNINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKS 291
L +I++ + + F+ +G ITS+ ++++ K GF+ F P+ AT AV+ MNG + +
Sbjct: 301 LDDSIDDDKLRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGT 360
Query: 292 KPLKVTLSGTK 302
KPL V L+ K
Sbjct: 361 KPLYVALAQRK 371
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 84/269 (31%), Positives = 134/269 (49%), Gaps = 37/269 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F G + +RV R+ S G+A I F PA+A++
Sbjct: 8 YPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN ++ +P+ I + + PG R VG +F+KNL +++D + L
Sbjct: 68 ALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVG---------NIFIKNLEDSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DE+G S+GFGF+ F +++AA++AI MNG ++ FV
Sbjct: 119 FSTFGNILSCKVVCDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRR 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ G + I+V NLP +++ ++LF++FG + S ++
Sbjct: 178 EREAEL--GARAL-----------EFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMR 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNG 286
D + GF+ F + A AV MNG
Sbjct: 225 DNSGHSRCFGFVNFEKHEEAQKAVVHMNG 253
>gi|358346231|ref|XP_003637173.1| Polyadenylate-binding protein [Medicago truncatula]
gi|355503108|gb|AES84311.1| Polyadenylate-binding protein [Medicago truncatula]
Length = 622
Score = 144 bits (362), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 93/277 (33%), Positives = 146/277 (52%), Gaps = 20/277 (7%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L + NLE S+DN+AL F FG + +VA + N S+G + F+ AK A +++
Sbjct: 115 LFIKNLETSIDNKALHETFSVFGNVLSCKVAMDSNGHSKGHGFVQFDNDQSAKNAIEKLD 174
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G L+ K V + + ++ +RS P K V+VKNL E+ E+LK F FG
Sbjct: 175 GRLMNDKKVYVGYF-VRCQERSSP--------KFTNVYVKNLSESYTNEDLKQLFNTFGV 225
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNST-FVSLAEI-----VP 210
I VKI++DENG SK FGF+ F S +A A+ ++NG FV A+
Sbjct: 226 ITSVKIMKDENGNSKRFGFVNFQSSDSAATAVEKLNGSTTNDGKVLFVGRAQKKSEREAE 285
Query: 211 GKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KH 265
K F + K + + +++ N+ ++N + +ELF+ FGTITS ++SD K
Sbjct: 286 LKAFFEQEKLKRYEKFQGANLYLKNIDKSLNEEKLKELFSEFGTITSCKVMSDARGRSKG 345
Query: 266 IGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
+GF+ F P+ A+ A+ MNG + KP+ V+++ K
Sbjct: 346 VGFVAFTTPEEASKAIDEMNGKIIGQKPVYVSVAQRK 382
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/261 (27%), Positives = 126/261 (48%), Gaps = 26/261 (9%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESR-GFAIIVFNTPAEAKK 90
++ + L+V +L+ +V++ L + F + + VRV R++ +S G+ + ++ +A
Sbjct: 22 FENSSLYVGDLQGNVNDAQLYDLFSQIAPVISVRVCRDQMTQSSLGYGYVNYSNARDAAN 81
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A +N + KP+ I F P R +F+KNL ++D + L
Sbjct: 82 AMENLNYVPLNGKPIRIMFSHRDPLIRKTGFA---------NLFIKNLETSIDNKALHET 132
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVP 210
F FGN++ K+ D NG SKG GF+QF + ++A+ AI +++GR++ +V +
Sbjct: 133 FSVFGNVLSCKVAMDSNGHSKGHGFVQFDNDQSAKNAIEKLDGRLMNDKKVYVGYF-VRC 191
Query: 211 GKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KH 265
++ PK ++V NL + N + ++LF FG ITS ++ D K
Sbjct: 192 QERSSPKF----------TNVYVKNLSESYTNEDLKQLFNTFGVITSVKIMKDENGNSKR 241
Query: 266 IGFIEFIMPKHATHAVSTMNG 286
GF+ F A AV +NG
Sbjct: 242 FGFVNFQSSDSAATAVEKLNG 262
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 70/261 (26%), Positives = 125/261 (47%), Gaps = 25/261 (9%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
++V NL S N+ L F FG + V++ +++N S+ F + F + A A ++N
Sbjct: 202 VYVKNLSESYTNEDLKQLFNTFGVITSVKIMKDENGNSKRFGFVNFQSSDSAATAVEKLN 261
Query: 97 GHLIGSKPVIITFVELKPGQRS---KPVGPEEKQYKKDK-----VFVKNLVETVDEEELK 148
G V+ K +R K +EK + +K +++KN+ ++++EE+LK
Sbjct: 262 GSTTNDGKVLFVGRAQKKSEREAELKAFFEQEKLKRYEKFQGANLYLKNIDKSLNEEKLK 321
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEI 208
F +FG I K++ D G+SKG GF+ F + + A KAI EMNG++I +VS+A+
Sbjct: 322 ELFSEFGTITSCKVMSDARGRSKGVGFVAFTTPEEASKAIDEMNGKIIGQKPVYVSVAQR 381
Query: 209 VPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSS--------- 259
+K + P +Q + N A S++ ++ + GT +
Sbjct: 382 KEERKAQLQAHFPAIQVSGGN----AGYHSSVQRLAPQQFYYEQGTFDLMAPQPNGYGFR 437
Query: 260 --LVSDKHIGFI--EFIMPKH 276
+SD GF+ +++P H
Sbjct: 438 PKFMSDVGPGFVTPNYLLPYH 458
>gi|348582138|ref|XP_003476833.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Cavia porcellus]
Length = 482
Score = 144 bits (362), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 86/270 (31%), Positives = 145/270 (53%), Gaps = 13/270 (4%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ SVDN+ L F FG + +V + + S+G+A + F + + A A EMNG
Sbjct: 214 IKNLDRSVDNKTLYEHFSGFGRILSSKVMSD-DQGSKGYAFVHFQSQSAADCAIQEMNGK 272
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
+I + V++ +R + + + V+VKN E +D+E L+ F K+G +
Sbjct: 273 VIRDRQVLVAPFR---SRRDREAELRTRTSEFTNVYVKNFGEDMDDERLQGVFSKYGRTL 329
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKK 213
VK++ D +GKSKGFGF+ F S++AA+KA+ EMNG+ I FV A+ K+
Sbjct: 330 SVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGKDINGQLVFVGRAQKKEERQAELKQ 389
Query: 214 VFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGFI 269
VF ++K + + K+++ NL +++ F+ FG+I+ ++ + K G +
Sbjct: 390 VFEELKRDGARRCQGVKLYIKNLDDTVDDDRLRRAFSSFGSISRVKVMEEEGQRKGFGLV 449
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299
F P+ A A++ MNG V SKPL + L+
Sbjct: 450 CFSSPEEAAKAMTQMNGRVLGSKPLNIALA 479
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 72/261 (27%), Positives = 123/261 (47%), Gaps = 21/261 (8%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKK 90
Y+ L+V +L L +F G + +R+ R+ G+A + F PA+A+K
Sbjct: 119 YRLASLYVGDLHADATEDLLFRKFSXAGPVLSIRICRDVATRRPLGYAYVNFLRPADAQK 178
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN + KP+ + + + R VG V +KNL +VD + L H
Sbjct: 179 ALDTMNFDAVEGKPIRLMWSQRDACLRKSGVG---------NVIIKNLDRSVDNKTLYEH 229
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVP 210
F FG I+ K++ D+ G SKG+ F+ F S AA+ AI EMNG++I+ V+ P
Sbjct: 230 FSGFGRILSSKVMSDDQG-SKGYAFVHFQSQSAADCAIQEMNGKVIRDRQVLVA-----P 283
Query: 211 GKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KH 265
+ + + + ++V N ++++ + +F+++G S +++D K
Sbjct: 284 FRSRRDREAELRTRTSEFTNVYVKNFGEDMDDERLQGVFSKYGRTLSVKVMTDSSGKSKG 343
Query: 266 IGFIEFIMPKHATHAVSTMNG 286
GF+ F + A AV MNG
Sbjct: 344 FGFVSFDSHEAAKKAVEEMNG 364
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 101/179 (56%), Gaps = 10/179 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
++V N +D++ L F K+G V+V + + +S+GF + F++ AKKA EMN
Sbjct: 304 VYVKNFGEDMDDERLQGVFSKYGRTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMN 363
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKD--------KVFVKNLVETVDEEELK 148
G I + V + + K +R + ++ K+D K+++KNL +TVD++ L+
Sbjct: 364 GKDINGQLVFVGRAQKKE-ERQAELKQVFEELKRDGARRCQGVKLYIKNLDDTVDDDRLR 422
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
F FG+I VK++ +E G+ KGFG + F S + A KA+ +MNGR++ ++LA+
Sbjct: 423 RAFSSFGSISRVKVM-EEEGQRKGFGLVCFSSPEEAAKAMTQMNGRVLGSKPLNIALAK 480
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
Query: 36 ELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEM 95
+L++ NL+ +VD+ L F FG++ V+V + + +GF ++ F++P EA KA +M
Sbjct: 406 KLYIKNLDDTVDDDRLRRAFSSFGSISRVKVMEEEG-QRKGFGLVCFSSPEEAAKAMTQM 464
Query: 96 NGHLIGSKPVIITFVE 111
NG ++GSKP+ I +
Sbjct: 465 NGRVLGSKPLNIALAK 480
>gi|332030568|gb|EGI70256.1| Polyadenylate-binding protein 1 [Acromyrmex echinatior]
Length = 678
Score = 144 bits (362), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 93/275 (33%), Positives = 156/275 (56%), Gaps = 15/275 (5%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ ++DN+A+ + F FG + +VA++++ S+G+ + F T A K+ ++NG
Sbjct: 146 IKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGASKGYGFVHFETEEAANKSIDKVNGM 205
Query: 99 LIGSKPVII-TFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNI 157
L+ K V + F+ K +R K +G + K + V+VKN E + E++LK F K+G I
Sbjct: 206 LLNGKKVYVGKFIPRK--EREKELGEKAKLFTN--VYVKNFGEDMTEDKLKDMFEKYGTI 261
Query: 158 IEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMI-QHNSTFVSLAEIVPGKKVFP 216
K++ ++GKS+GFGF+ F AAE+A++E+NG+ I + +V A+ ++
Sbjct: 262 TSHKVMSKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEIAEGKCMYVGRAQKKAERQQEL 321
Query: 217 KVKPPLLQPARKNK-----IFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIG 267
K K L+ R N+ ++V NL I++ + F FGTITS+ ++ + K G
Sbjct: 322 KRKFEQLKIERLNRYQGVNLYVKNLDDTIDDERLRKEFTPFGTITSAKVMMEEGRSKGFG 381
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F+ F P+ AT AV+ MNG + SKPL V L+ K
Sbjct: 382 FVCFSQPEEATKAVTEMNGRIVGSKPLYVALAQRK 416
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 78/306 (25%), Positives = 134/306 (43%), Gaps = 67/306 (21%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAE--- 87
Y L+V +L + L +F G + +RV R+ S G+A + F PA+
Sbjct: 8 YPMASLYVGDLHTDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADVVV 67
Query: 88 ----------------------------------------AKKARVEMNGHLIGSKPVII 107
A++A MN +I +P+ I
Sbjct: 68 NVVTQRGFTRMAACVPHTCLANVPTIVPTMLDPRPHSTVNAERALDTMNFDMIKGRPIRI 127
Query: 108 TFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDEN 167
+ + P R VG VF+KNL + +D + + F FGNI+ K+ +DE+
Sbjct: 128 MWSQRDPSLRKSGVG---------NVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDES 178
Query: 168 GKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKV--KPPLLQP 225
G SKG+GF+ F + +AA K+I ++NG ++ N V + + +P K+ ++ K L
Sbjct: 179 GASKGYGFVHFETEEAANKSIDKVNGMLL--NGKKVYVGKFIPRKEREKELGEKAKLF-- 234
Query: 226 ARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS-----DKHIGFIEFIMPKHATHA 280
++V N ++ + +++F ++GTITS ++S + GF+ F P A A
Sbjct: 235 ---TNVYVKNFGEDMTEDKLKDMFEKYGTITSHKVMSKDDGKSRGFGFVAFEDPDAAEQA 291
Query: 281 VSTMNG 286
V +NG
Sbjct: 292 VLELNG 297
>gi|41152034|ref|NP_958453.1| polyadenylate-binding protein 4 [Danio rerio]
gi|31419252|gb|AAH53126.1| Poly(A) binding protein, cytoplasmic 4 (inducible form) [Danio
rerio]
Length = 637
Score = 144 bits (362), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 94/308 (30%), Positives = 163/308 (52%), Gaps = 23/308 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK + W + D R + N + + NL+ S+DN+AL + F FG +
Sbjct: 79 KGKPIRIMWSQ---RDPSLRKSGVGN-------VFIKNLDKSIDNKALYDTFSAFGNILS 128
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V ++N S+G+A + F T A +A +MNG L+ + V + + + +R +G
Sbjct: 129 CKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRK-EREAEMGA 186
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
+ K++ V++KN + +D++ LK F K+G + VK++ D GKS+GFGF+ + ++
Sbjct: 187 KAKEFTN--VYIKNFGDDMDDQRLKELFDKYGKTLSVKVMTDPTGKSRGFGFVSYEKHED 244
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A KA+ EMNG + + FV A+ K+ F ++K + + +++ NL
Sbjct: 245 ANKAVEEMNGTELNGKTVFVGRAQKKMERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 304
Query: 239 NINNSEFEELFARFGTITSSSLV----SDKHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
I++ + + F+ FG+ITS+ ++ K GF+ F P+ AT AV+ MNG + SKPL
Sbjct: 305 TIDDEKLRKEFSPFGSITSAKVMLEEGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPL 364
Query: 295 KVTLSGTK 302
V L+ K
Sbjct: 365 YVALAQRK 372
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 79/269 (29%), Positives = 129/269 (47%), Gaps = 37/269 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L P + L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 9 YPMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 68
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN ++ KP+ I + + P R VG VF+KNL +++D + L
Sbjct: 69 ALDTMNFDVVKGKPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKSIDNKALYDT 119
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+ F+ F + AA++AI +MNG ++ FV
Sbjct: 120 FSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRK 178
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N ++++ +ELF ++G S +++
Sbjct: 179 EREAEMGAKAKEF-------------TNVYIKNFGDDMDDQRLKELFDKYGKTLSVKVMT 225
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNG 286
D + GF+ + + A AV MNG
Sbjct: 226 DPTGKSRGFGFVSYEKHEDANKAVEEMNG 254
>gi|148232824|ref|NP_001080204.1| polyadenylate-binding protein 1-A [Xenopus laevis]
gi|623598|gb|AAA60936.1| poly(A)-binding protein [Xenopus laevis]
Length = 633
Score = 144 bits (362), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 89/275 (32%), Positives = 153/275 (55%), Gaps = 13/275 (4%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S+DN+AL + F FG + +V ++N S+G+ + F T A++A +MN
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMN 159
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G L+ + V + + + +R +G K++ V++KN + +++E LK F K+G
Sbjct: 160 GMLLNDRKVFVGRFKSR-KEREAELGARAKEFTN--VYIKNFGDDMNDERLKEMFGKYGP 216
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPG 211
+ VK++ D+NGKSKGFGF+ F ++ A+KA+ EM G+ + S FV A+
Sbjct: 217 ALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMYGKDMNGKSMFVGRAQKKVERQTEL 276
Query: 212 KKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIG 267
K+ F ++ + + ++V NL I++ + F FGTITS+ ++ + K G
Sbjct: 277 KRKFEQMNQDRITRYQGVNLYVKNLDDGIDDERLRKEFLPFGTITSAKVMMEGGRSKGFG 336
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F+ F P+ AT AV+ MNG + +KPL V L+ K
Sbjct: 337 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 371
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 84/279 (30%), Positives = 132/279 (47%), Gaps = 37/279 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I +PV I + + P R VG +F+KNL +++D + L
Sbjct: 68 ALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVG---------NIFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+GF+ F + +AAE+AI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N ++N+ +E+F ++G S +++
Sbjct: 178 EREAELGARAKEF-------------TNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMT 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
D K GF+ F + A AV M G K + V
Sbjct: 225 DDNGKSKGFGFVSFERHEDAQKAVDEMYGKDMNGKSMFV 263
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 51/89 (57%), Gaps = 1/89 (1%)
Query: 25 NKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNT 84
N++ Y+ L+V NL+ +D++ L EF FGT+ +V + S+GF + F++
Sbjct: 284 NQDRITRYQGVNLYVKNLDDGIDDERLRKEFLPFGTITSAKVMM-EGGRSKGFGFVCFSS 342
Query: 85 PAEAKKARVEMNGHLIGSKPVIITFVELK 113
P EA KA EMNG ++ +KP+ + + K
Sbjct: 343 PEEATKAVTEMNGRIVATKPLYVALAQRK 371
>gi|148298695|ref|NP_001091823.1| poly A binding protein [Bombyx mori]
gi|111608107|gb|ABH10797.1| poly A binding protein [Bombyx mori]
Length = 603
Score = 144 bits (362), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 93/275 (33%), Positives = 152/275 (55%), Gaps = 15/275 (5%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+DN+AL + F FG + +VA+++ S+G+ + F T A K+ ++NG
Sbjct: 94 IKNLDKSIDNKALFDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVNGM 153
Query: 99 LIGSKPVII-TFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNI 157
L+ K V + F+ K +R K +G + K + V+VKN E +E LK F K+G I
Sbjct: 154 LLNGKMVYVGRFIPRK--EREKELGEKAKLFTN--VYVKNFGEDFSDEMLKDMFEKYGRI 209
Query: 158 IEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGR-MIQHNSTFVSLAEIVPG----- 211
K++ ++G S+GFGF+ F AAE+A IE+NG+ +++ +V A+
Sbjct: 210 TSHKVMYKDDGNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKEL 269
Query: 212 KKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIG 267
K+ F ++K L + ++V NL I++ + FA FGTITS+ ++ + K G
Sbjct: 270 KRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFG 329
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F+ F P+ AT AV+ MNG + +KPL V L+ K
Sbjct: 330 FVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 364
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 78/269 (28%), Positives = 135/269 (50%), Gaps = 25/269 (9%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L + L +F G + +RV R+ S G+A + F P +A++A M
Sbjct: 4 LYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDTM 63
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N +I +P+ I + + P R VG VF+KNL +++D + L F FG
Sbjct: 64 NFDIIKGRPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKSIDNKALFDTFSAFG 114
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ +DE G SKG+GF+ F + +AA K+I ++NG ++ N V + +P K+
Sbjct: 115 NILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVNGMLL--NGKMVYVGRFIPRKERE 172
Query: 216 PKV--KPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLV-----SDKHIGF 268
++ K L ++V N + ++ +++F ++G ITS ++ + + GF
Sbjct: 173 KELGEKAKLF-----TNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGF 227
Query: 269 IEFIMPKHATHAVSTMNG-HVFKSKPLKV 296
+ F P A A +NG + + KPL V
Sbjct: 228 VAFEDPDAAERACIELNGKELVEGKPLYV 256
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 103/180 (57%), Gaps = 11/180 (6%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
++V N ++ L + F+K+G + +V + SRGF + F P A++A +E+N
Sbjct: 185 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIELN 244
Query: 97 G-HLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKV--------FVKNLVETVDEEEL 147
G L+ KP+ + + K +R K + + +Q K +++ +VKNL +T+D+E L
Sbjct: 245 GKELVEGKPLYVGRAQ-KKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERL 303
Query: 148 KSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
+ F FG I K++ E+G+SKGFGF+ F S + A KA+ EMNGR++ +V+LA+
Sbjct: 304 RKEFAPFGTITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 362
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L+V NL+ ++D++ L EF FGT+ +V ++ S+GF + F++P EA KA
Sbjct: 284 YQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML-EDGRSKGFGFVCFSSPEEATKA 342
Query: 92 RVEMNGHLIGSKPVIITFVELK 113
EMNG ++G+KP+ + + K
Sbjct: 343 VTEMNGRIVGTKPLYVALAQRK 364
>gi|338722679|ref|XP_001915947.2| PREDICTED: LOW QUALITY PROTEIN: poly(A) binding protein,
cytoplasmic 4-like [Equus caballus]
Length = 397
Score = 144 bits (362), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 84/270 (31%), Positives = 145/270 (53%), Gaps = 13/270 (4%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+DN+ L F FG + +V + + SRG+A + F A +A EMNG
Sbjct: 102 IKNLDKSIDNKTLYEHFSAFGKILSSKVMSD-DQGSRGYAFVHFQNQMAADRAIEEMNGA 160
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ + FV ++ + + K + +++KN + +D++ L+ F K+G +
Sbjct: 161 LLKDCRL---FVGRFKNRQDREAELQNKANEFTNIYIKNFGDDMDDKRLEEVFSKYGKTV 217
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKK 213
VK++ D GKSKGFGF+ F+S++AA+KA+ EMNG+ I FV A+ K+
Sbjct: 218 SVKVMTDSTGKSKGFGFVSFYSHEAAQKAVEEMNGKDINGQLLFVGRAQKKAERQAELKQ 277
Query: 214 VFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGFI 269
+F + K + + K+++ NL I++ + F+ FG+I+ ++ + K G I
Sbjct: 278 MFEQQKQERFRRCQGVKLYIKNLDDTIDDEKLRREFSSFGSISRVKVMKEEGRSKGFGLI 337
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299
F P+ AT A++ MNG + SKPL + L+
Sbjct: 338 CFSSPEEATRAMTEMNGRILGSKPLNIALA 367
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 74/263 (28%), Positives = 128/263 (48%), Gaps = 25/263 (9%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y++ L+V +L V L +F G + +R+ R+ S G+A + F A+A+K
Sbjct: 7 YRQASLYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLQLADAQK 66
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN I K + + + + R +G VF+KNL +++D + L H
Sbjct: 67 ALDTMNFDTIKGKSIRLMWSQRDAYLRKSGIG---------NVFIKNLDKSIDNKTLYEH 117
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVP 210
F FG I+ K++ D+ G S+G+ F+ F + AA++AI EMNG +++ FV
Sbjct: 118 FSAFGKILSSKVMSDDQG-SRGYAFVHFQNQMAADRAIEEMNGALLKDCRLFV------- 169
Query: 211 GKKVFPKVKPPLLQPARK--NKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----- 263
G+ + + LQ I++ N ++++ EE+F+++G S +++D
Sbjct: 170 GRFKNRQDREAELQNKANEFTNIYIKNFGDDMDDKRLEEVFSKYGKTVSVKVMTDSTGKS 229
Query: 264 KHIGFIEFIMPKHATHAVSTMNG 286
K GF+ F + A AV MNG
Sbjct: 230 KGFGFVSFYSHEAAQKAVEEMNG 252
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 109/196 (55%), Gaps = 13/196 (6%)
Query: 23 RSNKENNKVYKENE---LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAI 79
R ++E K NE +++ N +D++ L F K+G V+V + +S+GF
Sbjct: 175 RQDREAELQNKANEFTNIYIKNFGDDMDDKRLEEVFSKYGKTVSVKVMTDSTGKSKGFGF 234
Query: 80 IVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKD-------- 131
+ F + A+KA EMNG I + + + + K +R + +Q K++
Sbjct: 235 VSFYSHEAAQKAVEEMNGKDINGQLLFVGRAQ-KKAERQAELKQMFEQQKQERFRRCQGV 293
Query: 132 KVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEM 191
K+++KNL +T+D+E+L+ F FG+I VK++++E G+SKGFG I F S + A +A+ EM
Sbjct: 294 KLYIKNLDDTIDDEKLRREFSSFGSISRVKVMKEE-GRSKGFGLICFSSPEEATRAMTEM 352
Query: 192 NGRMIQHNSTFVSLAE 207
NGR++ ++LA+
Sbjct: 353 NGRILGSKPLNIALAQ 368
>gi|410956870|ref|XP_003985059.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Felis catus]
Length = 486
Score = 143 bits (361), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 88/270 (32%), Positives = 145/270 (53%), Gaps = 13/270 (4%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+DN+ L F FG + +V + + SRG+A + F A +A EMNG
Sbjct: 201 IKNLDRSIDNKTLYEHFSAFGKILSSKVMSD-DQGSRGYAFVHFQNQIAADRAIEEMNGA 259
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ + FV ++ + K + V++KN + +D+E LK F K+G +
Sbjct: 260 LLKDCRL---FVGRFKNRKDREAELRNKANEFTNVYIKNFGDDMDDERLKEVFSKYGKTL 316
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKK 213
VK++ D +GKSKGFGF+ F S++AA+KA+ EMNG+ I FV A+ K+
Sbjct: 317 SVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGKDINGQLLFVGRAQKKSERQAELKQ 376
Query: 214 VFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGFI 269
VF ++K + + K+++ NL I++ + F+ FG+I+ ++ + K G I
Sbjct: 377 VFEQLKQERFRRCQGMKLYIKNLDDTIDDEKLWREFSSFGSISRVKIMREEGRSKGFGLI 436
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299
F P+ AT A++ MNG + SKPL + L+
Sbjct: 437 CFSSPEEATKAMAEMNGRILGSKPLYIALA 466
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 77/285 (27%), Positives = 136/285 (47%), Gaps = 26/285 (9%)
Query: 9 EASWDEGISDDEGARSNKENNKV-YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVA 67
E+SWD RS + N Y++ L+V +L V L +F G + +R+
Sbjct: 86 ESSWDRPAV----GRSKEMNVAAKYRQASLYVGDLHADVTEDLLFKKFSTVGPVLSIRIC 141
Query: 68 RNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEK 126
R+ S G+A + F A+A++A MN I KP+ + + + R +G
Sbjct: 142 RDLVTRRSLGYAYVNFLKLADAQRALDTMNFDTIKGKPIRLMWSQRDAYLRKSGIG---- 197
Query: 127 QYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEK 186
VF+KNL ++D + L HF FG I+ K++ D+ G S+G+ F+ F + AA++
Sbjct: 198 -----NVFIKNLDRSIDNKTLYEHFSAFGKILSSKVMSDDQG-SRGYAFVHFQNQIAADR 251
Query: 187 AIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFE 246
AI EMNG +++ FV + ++ + K +++ N ++++ +
Sbjct: 252 AIEEMNGALLKDCRLFVGRFKNRKDREAELRNKANEF-----TNVYIKNFGDDMDDERLK 306
Query: 247 ELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNG 286
E+F+++G S +++D K GF+ F + A AV MNG
Sbjct: 307 EVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNG 351
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/214 (33%), Positives = 119/214 (55%), Gaps = 14/214 (6%)
Query: 23 RSNKENNKVYKENE---LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAI 79
R ++E K NE +++ N +D++ L F K+G V+V + + +S+GF
Sbjct: 274 RKDREAELRNKANEFTNVYIKNFGDDMDDERLKEVFSKYGKTLSVKVMTDSSGKSKGFGF 333
Query: 80 IVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKD-------- 131
+ F++ AKKA EMNG I + + + + K +R + +Q K++
Sbjct: 334 VSFDSHEAAKKAVEEMNGKDINGQLLFVGRAQ-KKSERQAELKQVFEQLKQERFRRCQGM 392
Query: 132 KVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEM 191
K+++KNL +T+D+E+L F FG+I VKI+R+E G+SKGFG I F S + A KA+ EM
Sbjct: 393 KLYIKNLDDTIDDEKLWREFSSFGSISRVKIMREE-GRSKGFGLICFSSPEEATKAMAEM 451
Query: 192 NGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQP 225
NGR++ +++LA+ P ++ +P L QP
Sbjct: 452 NGRILGSKPLYIALAQ-KPXERNAYHGRPCLQQP 484
>gi|297283068|ref|XP_001113342.2| PREDICTED: polyadenylate-binding protein 4 [Macaca mulatta]
Length = 657
Score = 143 bits (361), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 93/273 (34%), Positives = 152/273 (55%), Gaps = 16/273 (5%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+DN+AL + F FG + +V ++N S+G+A + F T A KA +MNG
Sbjct: 103 IKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGM 161
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ + V + + + +R +G + K++ V++KN E VD+E LK F K +
Sbjct: 162 LLNDRKVFVGRFKSRK-EREAELGAKAKEFTN--VYIKNFGEEVDDESLKELFSK---TL 215
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKK 213
VK++RD +GKSKGFGF+ + ++ A KA+ EMNG+ I FV A+ K+
Sbjct: 216 SVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKR 275
Query: 214 VFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLV----SDKHIGFI 269
F ++K + + +++ NL I++ + + F+ FG+ITS+ ++ K GF+
Sbjct: 276 KFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFV 335
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F P+ AT AV+ MNG + SKPL V L+ K
Sbjct: 336 CFSSPEEATKAVTEMNGRIVGSKPLYVALAQRK 368
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 80/266 (30%), Positives = 125/266 (46%), Gaps = 34/266 (12%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KP+ I + + P R VG VF+KNL +++D + L
Sbjct: 68 ALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+ F+ F + +AA+KAI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N +++ +ELF++ ++ S
Sbjct: 178 EREAELGAKAKEF-------------TNVYIKNFGEEVDDESLKELFSKTLSVKVMRDPS 224
Query: 263 DKH--IGFIEFIMPKHATHAVSTMNG 286
K GF+ + + A AV MNG
Sbjct: 225 GKSKGFGFVSYEKHEDANKAVEEMNG 250
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L++ NL+ ++D++ L EF FG++ +V ++ S+GF + F++P EA KA
Sbjct: 288 YQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKA 346
Query: 92 RVEMNGHLIGSKPVIITFVELK 113
EMNG ++GSKP+ + + K
Sbjct: 347 VTEMNGRIVGSKPLYVALAQRK 368
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITS----SSLVSDKHIGF--IEFIMPKHATHAVSTM 284
++V +L S++ + E F+ G + S +++ + +G+ + F P A A+ TM
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N V K KP+++ S P +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSL 93
>gi|336276750|ref|XP_003353128.1| hypothetical protein SMAC_03445 [Sordaria macrospora k-hell]
gi|380092612|emb|CCC09889.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 754
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 85/268 (31%), Positives = 136/268 (50%), Gaps = 24/268 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+PSV L F + G++ +RV R+ S G+A + +NT A+ +KA E+
Sbjct: 63 LYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEEL 122
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI +P I + + P R G +F+KNL +D + L F FG
Sbjct: 123 NYTLIKGRPCRIMWSQRDPALRKTGAG---------NIFIKNLDAAIDNKALHDTFAAFG 173
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ +DE+G SKG+GF+ + + +AA +AI +NG ++ +V G +
Sbjct: 174 NILSCKVAQDEHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYV-------GHHIP 226
Query: 216 PKVKPPLLQPARKN--KIFVANLPSNINNSEFEELFARFGTITSSSLVSDKH-----IGF 268
K + + + N ++V N+ + + EF ELF +FG +TSSSL D+ GF
Sbjct: 227 KKDRQSKFEEMKANFTNVYVKNINHEVTDDEFRELFEKFGEVTSSSLARDQEGKTRGFGF 286
Query: 269 IEFIMPKHATHAVSTMNGHVFKSKPLKV 296
+ F + A AV +NG F+ + L V
Sbjct: 287 VNFTTHEAAAKAVDDLNGKDFRGQDLYV 314
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 81/317 (25%), Positives = 150/317 (47%), Gaps = 54/317 (17%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ ++DN+AL + F FG + +VA++++ S+G+ + + T A +A +N
Sbjct: 151 IFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEHGNSKGYGFVHYETDEAASQAIKHVN 210
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G L+ K V + K ++SK EE + V+VKN+ V ++E + F KFG
Sbjct: 211 GMLLNEKKVYVGHHIPKKDRQSKF---EEMKANFTNVYVKNINHEVTDDEFRELFEKFGE 267
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGK--KV 214
+ + RD+ GK++GFGF+ F +++AA KA+ ++NG+ + +V A+ + ++
Sbjct: 268 VTSSSLARDQEGKTRGFGFVNFTTHEAAAKAVDDLNGKDFRGQDLYVGRAQKKHEREEEL 327
Query: 215 FPKVKPPLLQPARKNK---IFVANLPSNINNSEFEELFARFGTITSSSLVSD-------- 263
+ L+ A K + +++ NL ++++ + +F+ +G ITS+ ++ D
Sbjct: 328 RRSYEAARLEKANKYQGVNLYIKNLGDDVDDEKLRAMFSEYGPITSAKVMRDSLIEGEEK 387
Query: 264 --------------------------------------KHIGFIEFIMPKHATHAVSTMN 285
K GF+ F P AT AV+ MN
Sbjct: 388 DEKDKENKKEGETKEEEEKEGSAEKKTEKKGDRKLGKSKGFGFVCFSNPDDATKAVTEMN 447
Query: 286 GHVFKSKPLKVTLSGTK 302
+ KPL V L+ K
Sbjct: 448 QRMVDGKPLYVALAQRK 464
Score = 40.8 bits (94), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 56/141 (39%), Gaps = 43/141 (30%)
Query: 20 EGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARN---------- 69
E AR K N Y+ L++ NL VD++ L F ++G + +V R+
Sbjct: 332 EAARLEKANK--YQGVNLYIKNLGDDVDDEKLRAMFSEYGPITSAKVMRDSLIEGEEKDE 389
Query: 70 ---------------------------KND----ESRGFAIIVFNTPAEAKKARVEMNGH 98
K D +S+GF + F+ P +A KA EMN
Sbjct: 390 KDKENKKEGETKEEEEKEGSAEKKTEKKGDRKLGKSKGFGFVCFSNPDDATKAVTEMNQR 449
Query: 99 LIGSKPVIITFVELKPGQRSK 119
++ KP+ + + K ++S+
Sbjct: 450 MVDGKPLYVALAQRKDVRKSQ 470
>gi|444721742|gb|ELW62457.1| Polyadenylate-binding protein 4-like protein [Tupaia chinensis]
Length = 370
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 86/270 (31%), Positives = 147/270 (54%), Gaps = 13/270 (4%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+DN+ L F FG + +V + + S+G+A + F + A +A EMNG
Sbjct: 102 IKNLDRSIDNKTLYEHFSAFGKILSSKVMSD-DQGSKGYAFVHFQNQSAADRAIEEMNGK 160
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ V FV ++ + K + V++KN + +D+E L+ F K+G +
Sbjct: 161 LLKDCKV---FVGRFKNRKDREAELRNKASEFTNVYIKNFGDDMDDERLREVFSKYGKTL 217
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKK 213
VK++ D +GKSKGFGF+ F +++AA+KA+ EMNG+ I FV A+ K+
Sbjct: 218 SVKVMTDPSGKSKGFGFVSFDNHEAAQKAVEEMNGKDINGQLIFVGRAQKKVERQAELKQ 277
Query: 214 VFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGFI 269
+F + K ++ + K+++ NL I++ + + F+ FG+I+ ++ + K G I
Sbjct: 278 MFEQQKRERIRKCQGVKLYIKNLDDTIDDEKLRKEFSSFGSISRVKVMQEEGQSKGFGLI 337
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299
F P+ AT A++ MNG + SKPL + LS
Sbjct: 338 CFSSPEEATKAMTEMNGQILGSKPLNIALS 367
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 107/186 (57%), Gaps = 8/186 (4%)
Query: 29 NKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEA 88
NK + +++ N +D++ L F K+G V+V + + +S+GF + F+ A
Sbjct: 184 NKASEFTNVYIKNFGDDMDDERLREVFSKYGKTLSVKVMTDPSGKSKGFGFVSFDNHEAA 243
Query: 89 KKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKD-------KVFVKNLVET 141
+KA EMNG I + + + + K ++++ E+Q ++ K+++KNL +T
Sbjct: 244 QKAVEEMNGKDINGQLIFVGRAQKKVERQAELKQMFEQQKRERIRKCQGVKLYIKNLDDT 303
Query: 142 VDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNST 201
+D+E+L+ F FG+I VK++++E G+SKGFG I F S + A KA+ EMNG+++
Sbjct: 304 IDDEKLRKEFSSFGSISRVKVMQEE-GQSKGFGLICFSSPEEATKAMTEMNGQILGSKPL 362
Query: 202 FVSLAE 207
++L++
Sbjct: 363 NIALSQ 368
>gi|307165845|gb|EFN60208.1| Polyadenylate-binding protein 1 [Camponotus floridanus]
Length = 635
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 92/275 (33%), Positives = 155/275 (56%), Gaps = 15/275 (5%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ ++DN+A+ + F FG + +VA++++ S+G+ + F T A K+ ++NG
Sbjct: 103 IKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGASKGYGFVHFETEEAANKSIDKVNGM 162
Query: 99 LIGSKPVII-TFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNI 157
L+ K V + F+ K +R K +G + K + V+VKN E + +++LK F K+G I
Sbjct: 163 LLNGKKVYVGKFIPRK--EREKELGEKAKLFTN--VYVKNFGEDMTDDKLKEMFEKYGTI 218
Query: 158 IEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHN-STFVSLAEIVPGKKVFP 216
K++ ++GKS+GFGF+ F AAE+A++E+NG+ I +V A+ ++
Sbjct: 219 TSHKVMSKDDGKSRGFGFVAFEDPDAAEQAVLELNGKDISEGKCMYVGRAQKKAERQQEL 278
Query: 217 KVKPPLLQPARKNK-----IFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIG 267
K K L+ R N+ ++V NL I++ + F FGTITS+ ++ + K G
Sbjct: 279 KRKFEQLKIERLNRYQGVNLYVKNLDDTIDDERLRKEFTPFGTITSAKVMMEEGRSKGFG 338
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F+ F P+ AT AV+ MNG + SKPL V L+ K
Sbjct: 339 FVCFSQPEEATKAVTEMNGRIVGSKPLYVALAQRK 373
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 79/263 (30%), Positives = 135/263 (51%), Gaps = 24/263 (9%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L + L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHTDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I +P+ I + + P R VG VF+KNL + +D + +
Sbjct: 68 ALDTMNFDMIKGRPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKNIDNKAMYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVP 210
F FGNI+ K+ +DE+G SKG+GF+ F + +AA K+I ++NG ++ N V + + +P
Sbjct: 119 FSAFGNILSCKVAQDESGASKGYGFVHFETEEAANKSIDKVNGMLL--NGKKVYVGKFIP 176
Query: 211 GKKVFPKV--KPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS-----D 263
K+ ++ K L ++V N ++ + + +E+F ++GTITS ++S
Sbjct: 177 RKEREKELGEKAKLF-----TNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMSKDDGKS 231
Query: 264 KHIGFIEFIMPKHATHAVSTMNG 286
+ GF+ F P A AV +NG
Sbjct: 232 RGFGFVAFEDPDAAEQAVLELNG 254
>gi|432907583|ref|XP_004077665.1| PREDICTED: polyadenylate-binding protein 1-like [Oryzias latipes]
Length = 635
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 93/311 (29%), Positives = 165/311 (53%), Gaps = 29/311 (9%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KG+ L W + D R + N + + NL+ S+DN+AL + F FG +
Sbjct: 78 KGRPLRIMWSQ---RDPSLRKSGVGN-------IFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V ++N S+G+ + F T A++A +MNG L+ + V + + + +R +G
Sbjct: 128 CKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSR-KEREAELGA 185
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
+++ V++KN E +D+E+LK F +G + V+++ D+ GKSKGFGF+ F ++
Sbjct: 186 RAREFTN--VYIKNFGEDMDDEKLKELFGNYGPALSVRVMTDDTGKSKGFGFVSFERHED 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLA--------EIVPGKKVFPKVKPPLLQPARKNKIFVAN 235
A+KA+ +MNG+ + +V A E+ K+ F ++K + + ++V N
Sbjct: 244 AQKAVDDMNGKELNGRQVYVGRAQKKGERQNEL---KRKFEQMKQDRMTRYQGVNLYVKN 300
Query: 236 LPSNINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKS 291
L +++ + F+ FGTITS+ ++ + K GF+ F P+ AT AV+ MNG + +
Sbjct: 301 LDDGLDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 292 KPLKVTLSGTK 302
KPL V L+ K
Sbjct: 361 KPLYVALAQRK 371
Score = 127 bits (318), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 84/263 (31%), Positives = 136/263 (51%), Gaps = 25/263 (9%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I +P+ I + + P R VG +F+KNL +++D + L
Sbjct: 68 ALDTMNFDVIKGRPLRIMWSQRDPSLRKSGVG---------NIFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVP 210
F FGNI+ K+V DENG SKG+GF+ F +++AAE+AI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFV------- 170
Query: 211 GK-KVFPKVKPPLLQPARK-NKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----- 263
G+ K + + L AR+ +++ N ++++ + +ELF +G S +++D
Sbjct: 171 GRFKSRKEREAELGARAREFTNVYIKNFGEDMDDEKLKELFGNYGPALSVRVMTDDTGKS 230
Query: 264 KHIGFIEFIMPKHATHAVSTMNG 286
K GF+ F + A AV MNG
Sbjct: 231 KGFGFVSFERHEDAQKAVDDMNG 253
>gi|171681916|ref|XP_001905901.1| hypothetical protein [Podospora anserina S mat+]
gi|170940917|emb|CAP66567.1| unnamed protein product [Podospora anserina S mat+]
Length = 804
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 93/290 (32%), Positives = 148/290 (51%), Gaps = 28/290 (9%)
Query: 18 DDEGARSNKENNKVYKENE--LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDES 74
D EGA + + ++ L+V L+PSV L F + G++ +RV R+ S
Sbjct: 95 DQEGAGPTPNSAAPHPQSSASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRS 154
Query: 75 RGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVF 134
G+A + +N A+ +KA ++N LI +P I + + P R G VF
Sbjct: 155 LGYAYVNYNATADGEKALEDLNYTLIKGRPCRIMWSQRDPALRKTGQG---------NVF 205
Query: 135 VKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGR 194
+KNL +D + L F FGNI+ K+ +DENG SKG+GF+ + + +AA AI +NG
Sbjct: 206 IKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYETDEAAANAIKHVNGM 265
Query: 195 MIQHNSTFVSLAEIVPGKKV---FPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFAR 251
++ +V +P K F ++K A ++V N+P+ + + EF ELFA+
Sbjct: 266 LLNEKKVYVGYH--IPKKDRQSKFEEMK------ANFTNVYVKNIPAEVTDEEFRELFAK 317
Query: 252 FGTITSSSLV-SD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
+G +TSSSL SD + GF+ F + A+ AV +NG F+ + L V
Sbjct: 318 YGDVTSSSLARSDEGKSRGFGFVNFTTHEAASKAVEELNGKDFRGQELYV 367
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 88/347 (25%), Positives = 159/347 (45%), Gaps = 61/347 (17%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KG+ W + D R + N + + NL+ ++DN+AL + F FG +
Sbjct: 181 KGRPCRIMWSQ---RDPALRKTGQGN-------VFIKNLDVAIDNKALHDTFAAFGNILS 230
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+VA+++N S+G+ + + T A A +NG L+ K V + + K ++SK
Sbjct: 231 CKVAQDENGNSKGYGFVHYETDEAAANAIKHVNGMLLNEKKVYVGYHIPKKDRQSKF--- 287
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
EE + V+VKN+ V +EE + F K+G++ + R + GKS+GFGF+ F +++A
Sbjct: 288 EEMKANFTNVYVKNIPAEVTDEEFRELFAKYGDVTSSSLARSDEGKSRGFGFVNFTTHEA 347
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNK-----IFVANLPS 238
A KA+ E+NG+ + +V A+ ++ + + + NK +++ NL
Sbjct: 348 ASKAVEELNGKDFRGQELYVGRAQKKHEREEELRRSYEAARQEKANKYQGVNLYIKNLGD 407
Query: 239 NINNSEFEELFARFGTITSSSLVSD----------------------------------- 263
++++ + ++F+ +G ITS+ ++ D
Sbjct: 408 DVDDDKLRQMFSEYGPITSAKVMRDSVVESAAEDEKDKENKKEDEEEKEGETAEKKAETK 467
Query: 264 --------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
K GF+ F P AT AV+ MN + +KPL V L+ K
Sbjct: 468 EKRKLGKSKGFGFVCFSNPDDATKAVTEMNQRMIDNKPLYVALAQRK 514
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 55/138 (39%), Gaps = 40/138 (28%)
Query: 20 EGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARN---------- 69
E AR K N Y+ L++ NL VD+ L F ++G + +V R+
Sbjct: 385 EAARQEKANK--YQGVNLYIKNLGDDVDDDKLRQMFSEYGPITSAKVMRDSVVESAAEDE 442
Query: 70 ----------------------------KNDESRGFAIIVFNTPAEAKKARVEMNGHLIG 101
K +S+GF + F+ P +A KA EMN +I
Sbjct: 443 KDKENKKEDEEEKEGETAEKKAETKEKRKLGKSKGFGFVCFSNPDDATKAVTEMNQRMID 502
Query: 102 SKPVIITFVELKPGQRSK 119
+KP+ + + K ++S+
Sbjct: 503 NKPLYVALAQRKDVRKSQ 520
>gi|448112633|ref|XP_004202146.1| Piso0_001626 [Millerozyma farinosa CBS 7064]
gi|359465135|emb|CCE88840.1| Piso0_001626 [Millerozyma farinosa CBS 7064]
Length = 625
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 102/309 (33%), Positives = 159/309 (51%), Gaps = 25/309 (8%)
Query: 5 GKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDV 64
G+ W + D R N E N + + NL P++DN+AL + F FG +
Sbjct: 118 GRPCRIMWSQ---RDPSLRRNGEGN-------IFIKNLHPAIDNKALHDTFSAFGKILSC 167
Query: 65 RVARNKNDESRGFAIIVFNTPAEAKKARVE-MNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+VA ++ S+ F + + T AEA KA +E +NG L+ + V + K + SK
Sbjct: 168 KVATDEQGNSKCFGFVHYET-AEAAKAAIENVNGMLLNDREVYVGKHVSKKDRESKF--- 223
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
EE + V+VKN+ EEE++ F +G I + + +D GKSKGFGF+ F S++A
Sbjct: 224 EEMKANFTNVYVKNIDLGFSEEEMRKLFEPYGKITSLHLEKDAEGKSKGFGFVNFESHEA 283
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A KA+ E+N + I +V A+ I K+ + + L + +FV NL
Sbjct: 284 AVKAVEELNDKDINGQKLYVGRAQKKRERIEELKRQYEAARLEKLSKYQGVNLFVKNLDD 343
Query: 239 NINNSEFEELFARFGTITSSSLVSDKH-----IGFIEFIMPKHATHAVSTMNGHVFKSKP 293
+I++ + EE F FGTITS+ ++ D+H GF+ F P+ AT A++ MN +F KP
Sbjct: 344 SIDSVKLEEEFKPFGTITSARVMVDEHGKSKGFGFVCFSSPEEATKAITEMNQRMFHGKP 403
Query: 294 LKVTLSGTK 302
L V L+ K
Sbjct: 404 LYVALAQRK 412
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 77/257 (29%), Positives = 119/257 (46%), Gaps = 24/257 (9%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L PSV+ L F G + +RV R+ +S G+A + F+ + +KA E+
Sbjct: 52 LYVGELNPSVNEALLFEIFSPVGQVSSIRVCRDAVTKKSLGYAYVNFHKLEDGEKAIEEL 111
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI +P I + + P R G +F+KNL +D + L F FG
Sbjct: 112 NYSLIDGRPCRIMWSQRDPSLRRNGEG---------NIFIKNLHPAIDNKALHDTFSAFG 162
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
I+ K+ DE G SK FGF+ + + +AA+ AI +NG ++ +V GK V
Sbjct: 163 KILSCKVATDEQGNSKCFGFVHYETAEAAKAAIENVNGMLLNDREVYV-------GKHVS 215
Query: 216 PKVKPPLLQPARKN--KIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGF 268
K + + + N ++V N+ + E +LF +G ITS L D K GF
Sbjct: 216 KKDRESKFEEMKANFTNVYVKNIDLGFSEEEMRKLFEPYGKITSLHLEKDAEGKSKGFGF 275
Query: 269 IEFIMPKHATHAVSTMN 285
+ F + A AV +N
Sbjct: 276 VNFESHEAAVKAVEELN 292
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 52/88 (59%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L V NL+ S+D+ L EFK FGT+ RV +++ +S+GF + F++P EA KA
Sbjct: 331 YQGVNLFVKNLDDSIDSVKLEEEFKPFGTITSARVMVDEHGKSKGFGFVCFSSPEEATKA 390
Query: 92 RVEMNGHLIGSKPVIITFVELKPGQRSK 119
EMN + KP+ + + K +RS+
Sbjct: 391 ITEMNQRMFHGKPLYVALAQRKDVRRSQ 418
>gi|414588971|tpg|DAA39542.1| TPA: hypothetical protein ZEAMMB73_983793 [Zea mays]
Length = 648
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 89/276 (32%), Positives = 146/276 (52%), Gaps = 15/276 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S+DN+AL + F FG + ++A + + ESRG+ + F A+ A ++N
Sbjct: 125 IFIKNLDKSIDNKALYDTFCAFGNILSCKIATDPSGESRGYGFVQFEKDESAQSAIDKLN 184
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G LI K V + P R + K V+VKNL +TV ++ELK F K+G
Sbjct: 185 GMLINDKKVFVG-----PFVRKQDRENVSSNIKFSNVYVKNLSDTVTDDELKEMFGKYGT 239
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEI-----VPG 211
I ++RD +GKS+ FGF+ F + AA +A+ E+NG++ +V A+ +
Sbjct: 240 ITSAVVMRDSDGKSRCFGFVNFENADAAAQAVQELNGKIFNDKELYVGRAQKKSEREMEL 299
Query: 212 KKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHI 266
K+ F K + + + +++ NL NI++ + ELFA +G ITS ++ D +
Sbjct: 300 KEKFEKNVQEVAEKFQNTNLYLKNLEENIDDEKLRELFAEYGNITSCKVMRDSNGVSRGS 359
Query: 267 GFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ F + A A++ MNG + SKPL V L+ K
Sbjct: 360 GFVAFKSAEDANRALTEMNGKMVGSKPLYVALAQRK 395
Score = 133 bits (335), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 86/302 (28%), Positives = 145/302 (48%), Gaps = 22/302 (7%)
Query: 1 MKSKGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGT 60
M ++G+ S E + + L+V +L SV + L + F + G
Sbjct: 1 MATQGQAAAGSASESGGSPAALAAAAAAAAAFPATSLYVGDLHESVQDAQLFDVFSQVGG 60
Query: 61 LRDVRVARNKND-ESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSK 119
+ VRV R+ N +S G+A + +N +A +A +N I KP+ I + P R
Sbjct: 61 VVSVRVCRDINSRKSLGYAYVNYNNQGDAARALELLNFTPINGKPIRIMYSNRDPSSRKS 120
Query: 120 PVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFF 179
G +F+KNL +++D + L F FGNI+ KI D +G+S+G+GF+QF
Sbjct: 121 GTG---------NIFIKNLDKSIDNKALYDTFCAFGNILSCKIATDPSGESRGYGFVQFE 171
Query: 180 SYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSN 239
++A+ AI ++NG +I FV G V + + + + + ++V NL
Sbjct: 172 KDESAQSAIDKLNGMLINDKKVFV-------GPFVRKQDRENVSSNIKFSNVYVKNLSDT 224
Query: 240 INNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
+ + E +E+F ++GTITS+ ++ D + GF+ F A AV +NG +F K L
Sbjct: 225 VTDDELKEMFGKYGTITSAVVMRDSDGKSRCFGFVNFENADAAAQAVQELNGKIFNDKEL 284
Query: 295 KV 296
V
Sbjct: 285 YV 286
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 108/202 (53%), Gaps = 12/202 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
++V NL +V + L F K+GT+ V R+ + +SR F + F A +A E+N
Sbjct: 216 VYVKNLSDTVTDDELKEMFGKYGTITSAVVMRDSDGKSRCFGFVNFENADAAAQAVQELN 275
Query: 97 GHLIGSKPVIITFVELKPGQR-------SKPVGPEEKQYKKDKVFVKNLVETVDEEELKS 149
G + K + + + K + K V ++++ +++KNL E +D+E+L+
Sbjct: 276 GKIFNDKELYVGRAQKKSEREMELKEKFEKNVQEVAEKFQNTNLYLKNLEENIDDEKLRE 335
Query: 150 HFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIV 209
F ++GNI K++RD NG S+G GF+ F S + A +A+ EMNG+M+ +V+LA+
Sbjct: 336 LFAEYGNITSCKVMRDSNGVSRGSGFVAFKSAEDANRALTEMNGKMVGSKPLYVALAQRK 395
Query: 210 PGKKV-----FPKVKPPLLQPA 226
+K F +++P + P+
Sbjct: 396 EDRKAKLQAQFSQMRPVAMAPS 417
>gi|414588970|tpg|DAA39541.1| TPA: hypothetical protein ZEAMMB73_983793 [Zea mays]
Length = 654
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 89/276 (32%), Positives = 146/276 (52%), Gaps = 15/276 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S+DN+AL + F FG + ++A + + ESRG+ + F A+ A ++N
Sbjct: 125 IFIKNLDKSIDNKALYDTFCAFGNILSCKIATDPSGESRGYGFVQFEKDESAQSAIDKLN 184
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G LI K V + P R + K V+VKNL +TV ++ELK F K+G
Sbjct: 185 GMLINDKKVFVG-----PFVRKQDRENVSSNIKFSNVYVKNLSDTVTDDELKEMFGKYGT 239
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEI-----VPG 211
I ++RD +GKS+ FGF+ F + AA +A+ E+NG++ +V A+ +
Sbjct: 240 ITSAVVMRDSDGKSRCFGFVNFENADAAAQAVQELNGKIFNDKELYVGRAQKKSEREMEL 299
Query: 212 KKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHI 266
K+ F K + + + +++ NL NI++ + ELFA +G ITS ++ D +
Sbjct: 300 KEKFEKNVQEVAEKFQNTNLYLKNLEENIDDEKLRELFAEYGNITSCKVMRDSNGVSRGS 359
Query: 267 GFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ F + A A++ MNG + SKPL V L+ K
Sbjct: 360 GFVAFKSAEDANRALTEMNGKMVGSKPLYVALAQRK 395
Score = 134 bits (336), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 86/302 (28%), Positives = 145/302 (48%), Gaps = 22/302 (7%)
Query: 1 MKSKGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGT 60
M ++G+ S E + + L+V +L SV + L + F + G
Sbjct: 1 MATQGQAAAGSASESGGSPAALAAAAAAAAAFPATSLYVGDLHESVQDAQLFDVFSQVGG 60
Query: 61 LRDVRVARNKND-ESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSK 119
+ VRV R+ N +S G+A + +N +A +A +N I KP+ I + P R
Sbjct: 61 VVSVRVCRDINSRKSLGYAYVNYNNQGDAARALELLNFTPINGKPIRIMYSNRDPSSRKS 120
Query: 120 PVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFF 179
G +F+KNL +++D + L F FGNI+ KI D +G+S+G+GF+QF
Sbjct: 121 GTG---------NIFIKNLDKSIDNKALYDTFCAFGNILSCKIATDPSGESRGYGFVQFE 171
Query: 180 SYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSN 239
++A+ AI ++NG +I FV G V + + + + + ++V NL
Sbjct: 172 KDESAQSAIDKLNGMLINDKKVFV-------GPFVRKQDRENVSSNIKFSNVYVKNLSDT 224
Query: 240 INNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
+ + E +E+F ++GTITS+ ++ D + GF+ F A AV +NG +F K L
Sbjct: 225 VTDDELKEMFGKYGTITSAVVMRDSDGKSRCFGFVNFENADAAAQAVQELNGKIFNDKEL 284
Query: 295 KV 296
V
Sbjct: 285 YV 286
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 108/202 (53%), Gaps = 12/202 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
++V NL +V + L F K+GT+ V R+ + +SR F + F A +A E+N
Sbjct: 216 VYVKNLSDTVTDDELKEMFGKYGTITSAVVMRDSDGKSRCFGFVNFENADAAAQAVQELN 275
Query: 97 GHLIGSKPVIITFVELKPGQR-------SKPVGPEEKQYKKDKVFVKNLVETVDEEELKS 149
G + K + + + K + K V ++++ +++KNL E +D+E+L+
Sbjct: 276 GKIFNDKELYVGRAQKKSEREMELKEKFEKNVQEVAEKFQNTNLYLKNLEENIDDEKLRE 335
Query: 150 HFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIV 209
F ++GNI K++RD NG S+G GF+ F S + A +A+ EMNG+M+ +V+LA+
Sbjct: 336 LFAEYGNITSCKVMRDSNGVSRGSGFVAFKSAEDANRALTEMNGKMVGSKPLYVALAQRK 395
Query: 210 PGKKV-----FPKVKPPLLQPA 226
+K F +++P + P+
Sbjct: 396 EDRKAKLQAQFSQMRPVAMAPS 417
>gi|47219550|emb|CAG09904.1| unnamed protein product [Tetraodon nigroviridis]
Length = 623
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 95/308 (30%), Positives = 166/308 (53%), Gaps = 23/308 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK + W + D R + N + + NL+ S+DN+AL + F FG +
Sbjct: 78 KGKPIRIMWSQ---RDPSLRKSGVGN-------VFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V ++N S+G+A + F T A +A +MNG L+ + V + + + +R +G
Sbjct: 128 CKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSR-KEREAELGA 185
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
+ K++ V++KN + +++E LK F K+G + VK++ D GKS+GFGFI + ++
Sbjct: 186 KAKEFTN--VYIKNFGDDMNDERLKELFDKYGKTLSVKVMTDPTGKSRGFGFISYEKHED 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNK-----IFVANLPS 238
A KA+ +MNG + + FV A+ ++ K K +L+ R ++ +++ NL
Sbjct: 244 ANKAVEDMNGTELNGKTVFVGRAQKKMERQAELKRKFEMLKQERISRYQGVNLYIKNLDD 303
Query: 239 NINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
I++ + + F+ FG+ITS+ ++ + K GF+ F P+ AT AV+ MNG + SKPL
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLEEGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPL 363
Query: 295 KVTLSGTK 302
V L+ K
Sbjct: 364 YVALAQRK 371
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 81/269 (30%), Positives = 130/269 (48%), Gaps = 37/269 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L P + L +F G + +RV R+ S G+A + F+ PA+A++
Sbjct: 8 YPMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN ++ KP+ I + + P R VG VF+KNL +++D + L
Sbjct: 68 ALDTMNFDVVKGKPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+ F+ F + AA++AI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N ++N+ +ELF ++G S +++
Sbjct: 178 EREAELGAKAKEF-------------TNVYIKNFGDDMNDERLKELFDKYGKTLSVKVMT 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNG 286
D + GFI + + A AV MNG
Sbjct: 225 DPTGKSRGFGFISYEKHEDANKAVEDMNG 253
>gi|351703575|gb|EHB06494.1| Polyadenylate-binding protein 1-like protein [Heterocephalus
glaber]
Length = 605
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 93/308 (30%), Positives = 164/308 (53%), Gaps = 23/308 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KG+ + W + D G R + N + + NLE S+D++AL + F FG +
Sbjct: 78 KGQPIRIMWSQ---RDPGLRKSGVGN-------VFIKNLEDSIDSKALYDTFSTFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+VA +++ SRGF + F T A++A MNG L+ + V + + +R +G
Sbjct: 128 CKVACDEHG-SRGFGFVHFETNEAAQQAISTMNGMLLNDRKVFVGHFK-SHREREAELGA 185
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
+ + ++VKNL +DE+ L+ F +FG ++ VK++RD +G S+GFGF+ F ++
Sbjct: 186 QALAFTN--IYVKNLHVDMDEQGLQDLFFEFGKMLSVKVMRDNSGHSRGFGFVNFEKHEE 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAEIVPG-----KKVFPKVKPPLLQPARKNKIFVANLPS 238
A+KA+ MNG+ + +V A+ K+ F ++K + ++V NL
Sbjct: 244 AQKAVDHMNGKEVSGQQLYVGRAQKRGERQNELKRRFEQMKQDRQTRYQGVNLYVKNLDD 303
Query: 239 NINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
+I++ + +F+ +G ITS+ ++++ K GF+ F P+ AT AV+ MNG + +KPL
Sbjct: 304 SISDEKLRTVFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGCIVGTKPL 363
Query: 295 KVTLSGTK 302
V L+ K
Sbjct: 364 YVALAQRK 371
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 86/279 (30%), Positives = 131/279 (46%), Gaps = 37/279 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKK 90
Y + L+V +L P V L F G + +RV R+ S G+A I F PA+A++
Sbjct: 8 YPLSSLYVGDLHPDVTEAMLYETFSPVGPILSIRVCRDVATRRSLGYAYINFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I +P+ I + + PG R VG VF+KNL +++D + L
Sbjct: 68 ALDTMNFEVIKGQPIRIMWSQRDPGLRKSGVG---------NVFIKNLEDSIDSKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+ DE+G S+GFGF+ F + +AA++AI MNG ++ FV
Sbjct: 119 FSTFGNILSCKVACDEHG-SRGFGFVHFETNEAAQQAISTMNGMLLNDRKVFVGHFKSHR 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ F I+V NL +++ ++LF FG + S ++
Sbjct: 178 EREAELGAQALAF-------------TNIYVKNLHVDMDEQGLQDLFFEFGKMLSVKVMR 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
D + GF+ F + A AV MNG + L V
Sbjct: 225 DNSGHSRGFGFVNFEKHEEAQKAVDHMNGKEVSGQQLYV 263
Score = 41.2 bits (95), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 6/83 (7%)
Query: 229 NKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGF--IEFIMPKHATHAVS 282
+ ++V +L ++ + E F+ G I S + D + +G+ I F P A A+
Sbjct: 11 SSLYVGDLHPDVTEAMLYETFSPVGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 283 TMNGHVFKSKPLKVTLSGTKPGV 305
TMN V K +P+++ S PG+
Sbjct: 71 TMNFEVIKGQPIRIMWSQRDPGL 93
>gi|406867457|gb|EKD20495.1| 4 family polyadenylate binding protein [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 785
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 91/270 (33%), Positives = 136/270 (50%), Gaps = 27/270 (10%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+ SV L F + G++ +RV R+ S G+A + +NT + +KA E+
Sbjct: 64 LYVGELDSSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTIDGEKALEEL 123
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI +P I + + P R G VF+KNL +D + L F FG
Sbjct: 124 NYTLIKGRPCRIMWSQRDPALRKTGQG---------NVFIKNLDTAIDNKALHDTFAAFG 174
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKV- 214
NI+ K+ +DE G SKG+GF+ + + +AA +AI +NG ++ FV +P K
Sbjct: 175 NILSCKVAQDETGASKGYGFVHYETDEAASQAIKHVNGMLLNEKKVFV--GHHIPKKDRQ 232
Query: 215 --FPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHI 266
F ++K A I+V N+P + EF ELF +FG +TS+SL D +
Sbjct: 233 SKFEEMK------ANFTNIYVKNIPVEATDEEFRELFEKFGDVTSASLARDTDSNKSRGF 286
Query: 267 GFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
GF+ FI +HA AV +NG FK + L V
Sbjct: 287 GFVNFINHEHAAKAVDELNGKDFKGQDLYV 316
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 88/353 (24%), Positives = 160/353 (45%), Gaps = 67/353 (18%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KG+ W + D R + N + + NL+ ++DN+AL + F FG +
Sbjct: 129 KGRPCRIMWSQ---RDPALRKTGQGN-------VFIKNLDTAIDNKALHDTFAAFGNILS 178
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+VA+++ S+G+ + + T A +A +NG L+ K V + K ++SK
Sbjct: 179 CKVAQDETGASKGYGFVHYETDEAASQAIKHVNGMLLNEKKVFVGHHIPKKDRQSK---F 235
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRD-ENGKSKGFGFIQFFSYK 182
EE + ++VKN+ +EE + F KFG++ + RD ++ KS+GFGF+ F +++
Sbjct: 236 EEMKANFTNIYVKNIPVEATDEEFRELFEKFGDVTSASLARDTDSNKSRGFGFVNFINHE 295
Query: 183 AAEKAIIEMNGRMIQHNSTFVSLAEIVPGK--KVFPKVKPPLLQPARKNK---IFVANLP 237
A KA+ E+NG+ + +V A+ + ++ + ++ A K + ++V NL
Sbjct: 296 HAAKAVDELNGKDFKGQDLYVGRAQKKHEREEELRKSYEAARIEKASKYQGVNLYVKNLD 355
Query: 238 SNINNSEFEELFARFGTITSSSLVSD---------------------------------- 263
++++ + ELF FG+ITS+ ++ D
Sbjct: 356 DDVDDDKLRELFTPFGSITSAKVMRDTPAETAEAEEKEKKDSEKNKENIKEGETAEAENT 415
Query: 264 --------------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
K GF+ F P+ A+ AV+ MN + +KPL V L+ K
Sbjct: 416 EDKPKSEKRTVGKSKGFGFVCFNNPEEASKAVTDMNQRMVNNKPLYVALAQRK 468
>gi|354476610|ref|XP_003500517.1| PREDICTED: polyadenylate-binding protein 1-like [Cricetulus
griseus]
Length = 637
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 91/283 (32%), Positives = 150/283 (53%), Gaps = 23/283 (8%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
V NL+ S+D++AL + F FG + +V ++N S+G+ + F T EA++A +MNG
Sbjct: 103 VKNLDRSIDSKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEEAERAIEKMNGM 161
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
+ + V + + + R +G K++ V++KNL E +D+E L+ F KFG +
Sbjct: 162 FLNDRKVFVGRFKSRR-DRQAELGARAKEFTN--VYIKNLGEDMDDERLQGLFSKFGPAL 218
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLA------------ 206
VK++ DE+GKSKGFGF+ F ++ A KA+ EMNG+ + +V A
Sbjct: 219 SVKVMTDESGKSKGFGFVSFERHEDARKAVDEMNGKDLNGKQIYVGRAQKKVERQTELKH 278
Query: 207 ---EIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD 263
++ K +V + + ++V NL I++ + F+ FGTITS+ + +
Sbjct: 279 KFGQMKQDKHKVEQVPQDISVRCQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVTME 338
Query: 264 ----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
K GF+ F P+ AT AV+ MNG + +KPL V L+ K
Sbjct: 339 GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 381
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 86/279 (30%), Positives = 131/279 (46%), Gaps = 37/279 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDE-SRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F G + +RV R++ S G+A + F +A++
Sbjct: 8 YSLASLYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDRTTRRSLGYASVNFQQLEDAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KPV I + + P R VG +FVKNL ++D + L
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVG---------NIFVKNLDRSIDSKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVS------ 204
F FGNI+ K+V DENG SKG+GF+ F + + AE+AI +MNG + FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYGFVHFETQEEAERAIEKMNGMFLNDRKVFVGRFKSRR 177
Query: 205 --LAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ NL ++++ + LF++FG S +++
Sbjct: 178 DRQAELGARAKEF-------------TNVYIKNLGEDMDDERLQGLFSKFGPALSVKVMT 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
D K GF+ F + A AV MNG K + V
Sbjct: 225 DESGKSKGFGFVSFERHEDARKAVDEMNGKDLNGKQIYV 263
>gi|448115215|ref|XP_004202770.1| Piso0_001626 [Millerozyma farinosa CBS 7064]
gi|359383638|emb|CCE79554.1| Piso0_001626 [Millerozyma farinosa CBS 7064]
Length = 626
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 101/309 (32%), Positives = 161/309 (52%), Gaps = 25/309 (8%)
Query: 5 GKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDV 64
G+ W + D R N E N + + NL P++DN+AL + F FG +
Sbjct: 118 GRPCRIMWSQ---RDPSLRRNGEGN-------IFIKNLHPAIDNKALHDTFSAFGKILSC 167
Query: 65 RVARNKNDESRGFAIIVFNTPAEAKKARVE-MNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+VA ++ S+ F + + T AEA +A +E +NG L+ + V + K + SK
Sbjct: 168 KVATDEQGNSKCFGFVHYET-AEAARAAIENVNGMLLNDREVYVGKHVSKKDRESK---F 223
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
EE + V+VKN+ EEE+++ F +G I + + +D GKSKGFGF+ F S++A
Sbjct: 224 EEMKANFTNVYVKNIDLGFSEEEMRNLFEPYGKITSLHLEKDAEGKSKGFGFVNFESHEA 283
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A KA+ E+N + I + +V A+ I K+ + + L + +FV NL
Sbjct: 284 AVKAVEELNDKDINGQNLYVGRAQKKRERIEELKRQYETARLEKLSKYQGVNLFVKNLDD 343
Query: 239 NINNSEFEELFARFGTITSSSLVSDKH-----IGFIEFIMPKHATHAVSTMNGHVFKSKP 293
+I++ + EE F FGTITS+ ++ D+H GF+ F P+ AT A++ MN +F KP
Sbjct: 344 SIDSVKLEEEFKPFGTITSARVMVDEHGKSKGFGFVCFSSPEEATKAITEMNQRMFHGKP 403
Query: 294 LKVTLSGTK 302
L V L+ K
Sbjct: 404 LYVALAQRK 412
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 76/257 (29%), Positives = 118/257 (45%), Gaps = 24/257 (9%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L PSV+ +L F G + +RV R+ +S G+A + F+ + +KA ++
Sbjct: 52 LYVGELNPSVNEASLFEIFSPVGQVSSIRVCRDAVTKKSLGYAYVNFHKLEDGEKAIDDL 111
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI +P I + + P R G +F+KNL +D + L F FG
Sbjct: 112 NYSLIDGRPCRIMWSQRDPSLRRNGEG---------NIFIKNLHPAIDNKALHDTFSAFG 162
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
I+ K+ DE G SK FGF+ + + +AA AI +NG ++ +V GK V
Sbjct: 163 KILSCKVATDEQGNSKCFGFVHYETAEAARAAIENVNGMLLNDREVYV-------GKHVS 215
Query: 216 PKVKPPLLQPARKN--KIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGF 268
K + + + N ++V N+ + E LF +G ITS L D K GF
Sbjct: 216 KKDRESKFEEMKANFTNVYVKNIDLGFSEEEMRNLFEPYGKITSLHLEKDAEGKSKGFGF 275
Query: 269 IEFIMPKHATHAVSTMN 285
+ F + A AV +N
Sbjct: 276 VNFESHEAAVKAVEELN 292
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 52/88 (59%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L V NL+ S+D+ L EFK FGT+ RV +++ +S+GF + F++P EA KA
Sbjct: 331 YQGVNLFVKNLDDSIDSVKLEEEFKPFGTITSARVMVDEHGKSKGFGFVCFSSPEEATKA 390
Query: 92 RVEMNGHLIGSKPVIITFVELKPGQRSK 119
EMN + KP+ + + K +RS+
Sbjct: 391 ITEMNQRMFHGKPLYVALAQRKDVRRSQ 418
>gi|195024447|ref|XP_001985876.1| GH21052 [Drosophila grimshawi]
gi|193901876|gb|EDW00743.1| GH21052 [Drosophila grimshawi]
Length = 645
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 90/276 (32%), Positives = 155/276 (56%), Gaps = 16/276 (5%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ ++DN+A+ + F FG + +VA ++ S+G+ + F T A + ++NG
Sbjct: 94 IKNLDKAIDNKAIYDTFSAFGNILSCKVATDEKGHSKGYGFVHFETEEAANTSIDKVNGM 153
Query: 99 LIGSKPVII-TFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNI 157
L+ K V + F+ K +R K +G + K + V++KN + D+E+LK +F +G I
Sbjct: 154 LLNGKKVYVGKFIPRK--EREKELGEKAKLFTN--VYIKNFTDEFDDEKLKENFEPYGKI 209
Query: 158 IEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGR-MIQHNSTFVSLAEIVPGKKVFP 216
K++ ++GKSKGFGF+ + + +AAE A+ +NG+ M + + +V+ A+ ++
Sbjct: 210 TSYKVMSKDDGKSKGFGFVAYETTEAAEAAVQALNGKDMGEGKTLYVARAQKKAERQQEL 269
Query: 217 KVKPPLLQPARKNKIF-----VANLPSNINNSEFEELFARFGTITSSSLVSD-----KHI 266
K K L+ R +F V NL +I++ + F+ +GTITS+ +++D K
Sbjct: 270 KRKFEELKKKRHESVFGVNLYVKNLDDSIDDERLRKEFSLYGTITSAKVMTDEEGRSKGF 329
Query: 267 GFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ FI P AT AV+ +NG V SKPL V L+ K
Sbjct: 330 GFVCFISPNEATCAVTELNGRVVGSKPLYVALAQRK 365
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 75/258 (29%), Positives = 129/258 (50%), Gaps = 24/258 (9%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L ++ L +F G + +RV R+ S G+A + F PA+A++A M
Sbjct: 4 LYVGDLHQDINEAGLFEKFSTAGPVLSIRVCRDVVTRRSLGYAYVNFQQPADAERALDTM 63
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N L+ +KP+ I + + P R VG VF+KNL + +D + + F FG
Sbjct: 64 NFDLVRNKPIRIMWSQRDPSLRRSGVG---------NVFIKNLDKAIDNKAIYDTFSAFG 114
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ DE G SKG+GF+ F + +AA +I ++NG ++ N V + + +P K+
Sbjct: 115 NILSCKVATDEKGHSKGYGFVHFETEEAANTSIDKVNGMLL--NGKKVYVGKFIPRKERE 172
Query: 216 PKV--KPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS-----DKHIGF 268
++ K L +++ N ++ + +E F +G ITS ++S K GF
Sbjct: 173 KELGEKAKLF-----TNVYIKNFTDEFDDEKLKENFEPYGKITSYKVMSKDDGKSKGFGF 227
Query: 269 IEFIMPKHATHAVSTMNG 286
+ + + A AV +NG
Sbjct: 228 VAYETTEAAEAAVQALNG 245
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 94/179 (52%), Gaps = 8/179 (4%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+++ N D++ L F+ +G + +V + +S+GF + + T A+ A +N
Sbjct: 185 VYIKNFTDEFDDEKLKENFEPYGKITSYKVMSKDDGKSKGFGFVAYETTEAAEAAVQALN 244
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDK--------VFVKNLVETVDEEELK 148
G +G + K +R + + + ++ KK + ++VKNL +++D+E L+
Sbjct: 245 GKDMGEGKTLYVARAQKKAERQQELKRKFEELKKKRHESVFGVNLYVKNLDDSIDDERLR 304
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
F +G I K++ DE G+SKGFGF+ F S A A+ E+NGR++ +V+LA+
Sbjct: 305 KEFSLYGTITSAKVMTDEEGRSKGFGFVCFISPNEATCAVTELNGRVVGSKPLYVALAQ 363
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 47/77 (61%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L+V NL+ S+D++ L EF +GT+ +V ++ S+GF + F +P EA A E+N
Sbjct: 289 LYVKNLDDSIDDERLRKEFSLYGTITSAKVMTDEEGRSKGFGFVCFISPNEATCAVTELN 348
Query: 97 GHLIGSKPVIITFVELK 113
G ++GSKP+ + + K
Sbjct: 349 GRVVGSKPLYVALAQRK 365
>gi|449438385|ref|XP_004136969.1| PREDICTED: polyadenylate-binding protein 2-like [Cucumis sativus]
gi|449495630|ref|XP_004159899.1| PREDICTED: polyadenylate-binding protein 2-like [Cucumis sativus]
Length = 649
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 91/278 (32%), Positives = 153/278 (55%), Gaps = 19/278 (6%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ ++D++AL + F FG++ +VA + + +S+GF + F+T A KA ++N
Sbjct: 119 IFIKNLDKAIDHKALHDTFSAFGSILSCKVATDSSGQSKGFGFVQFDTEEAALKAIEKLN 178
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G L+ K V + P R + ++ K + VFVKNL ET EE+LK+ F +FG
Sbjct: 179 GMLLNDKQVFVG-----PFLRKQERESVSEKTKFNNVFVKNLAETTSEEDLKNMFGEFGP 233
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFP 216
I V ++RD GKSK FGF+ F + A +++ +NG+ + +V A+ ++V
Sbjct: 234 ITSVVVMRDGEGKSKCFGFVNFENADDAARSVEALNGKKVDGKEWYVGKAQKKSEREV-- 291
Query: 217 KVKPPLLQPARKNK-------IFVANLPSNINNSEFEELFARFGTITSSSLVSD-----K 264
++K Q ++ ++V NL +I++ + +ELF FGTITS ++ D +
Sbjct: 292 ELKSRFEQSVKEAADKYQGANLYVKNLDDSIDDDKLKELFTGFGTITSCKVMRDPNGISR 351
Query: 265 HIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ F P+ A A++ MNG + SKPL V L+ K
Sbjct: 352 GSGFVAFSSPEEAARALAEMNGRMIVSKPLYVALAQRK 389
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 72/256 (28%), Positives = 126/256 (49%), Gaps = 22/256 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L+ +V + L + F + G + VRV R+ + S G+ + ++ P +A +A +
Sbjct: 31 LYVGDLDVNVTDSQLYDLFNQVGQVVSVRVCRDLTSRRSLGYGYVNYSNPVDASRALDVL 90
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N + P+ + + P R G +F+KNL + +D + L F FG
Sbjct: 91 NFTPLNGNPIRVMYSHRDPSVRKSGSG---------NIFIKNLDKAIDHKALHDTFSAFG 141
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
+I+ K+ D +G+SKGFGF+QF + +AA KAI ++NG ++ FV G +
Sbjct: 142 SILSCKVATDSSGQSKGFGFVQFDTEEAALKAIEKLNGMLLNDKQVFV-------GPFLR 194
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIE 270
+ + + + + N +FV NL + + + +F FG ITS ++ D K GF+
Sbjct: 195 KQERESVSEKTKFNNVFVKNLAETTSEEDLKNMFGEFGPITSVVVMRDGEGKSKCFGFVN 254
Query: 271 FIMPKHATHAVSTMNG 286
F A +V +NG
Sbjct: 255 FENADDAARSVEALNG 270
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 97/183 (53%), Gaps = 9/183 (4%)
Query: 33 KENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKAR 92
K N + V NL + + L N F +FG + V V R+ +S+ F + F +A ++
Sbjct: 206 KFNNVFVKNLAETTSEEDLKNMFGEFGPITSVVVMRDGEGKSKCFGFVNFENADDAARSV 265
Query: 93 VEMNGHLIGSKPVII--------TFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDE 144
+NG + K + VELK + + V +Y+ ++VKNL +++D+
Sbjct: 266 EALNGKKVDGKEWYVGKAQKKSEREVELK-SRFEQSVKEAADKYQGANLYVKNLDDSIDD 324
Query: 145 EELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVS 204
++LK F FG I K++RD NG S+G GF+ F S + A +A+ EMNGRMI +V+
Sbjct: 325 DKLKELFTGFGTITSCKVMRDPNGISRGSGFVAFSSPEEAARALAEMNGRMIVSKPLYVA 384
Query: 205 LAE 207
LA+
Sbjct: 385 LAQ 387
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 56/97 (57%)
Query: 23 RSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVF 82
+S KE Y+ L+V NL+ S+D+ L F FGT+ +V R+ N SRG + F
Sbjct: 299 QSVKEAADKYQGANLYVKNLDDSIDDDKLKELFTGFGTITSCKVMRDPNGISRGSGFVAF 358
Query: 83 NTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSK 119
++P EA +A EMNG +I SKP+ + + K +R++
Sbjct: 359 SSPEEAARALAEMNGRMIVSKPLYVALAQRKEDRRAR 395
>gi|7528270|gb|AAF63202.1|AF240679_1 poly(A)-binding protein [Cucumis sativus]
Length = 649
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 91/278 (32%), Positives = 153/278 (55%), Gaps = 19/278 (6%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ ++D++AL + F FG++ +VA + + +S+GF + F+T A KA ++N
Sbjct: 119 IFIKNLDKAIDHKALHDTFSAFGSILSCKVATDSSGQSKGFGFVQFDTEEAALKAIEKLN 178
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G L+ K V + P R + ++ K + VFVKNL ET EE+LK+ F +FG
Sbjct: 179 GMLLNDKQVFVG-----PFLRKQERESVSEKTKFNNVFVKNLAETTSEEDLKNMFGEFGP 233
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFP 216
I V ++RD GKSK FGF+ F + A +++ +NG+ + +V A+ ++V
Sbjct: 234 ITSVVVMRDGEGKSKCFGFVNFENADDAARSVEALNGKKVDGKEWYVGKAQKKSEREV-- 291
Query: 217 KVKPPLLQPARKNK-------IFVANLPSNINNSEFEELFARFGTITSSSLVSD-----K 264
++K Q ++ ++V NL +I++ + +ELF FGTITS ++ D +
Sbjct: 292 ELKSRFEQSVKEAADKYQGANLYVKNLDDSIDDDKLKELFTGFGTITSCKVMRDPNGISR 351
Query: 265 HIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ F P+ A A++ MNG + SKPL V L+ K
Sbjct: 352 GSGFVAFSSPEEAARALAEMNGRMIVSKPLYVALAQRK 389
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 72/256 (28%), Positives = 126/256 (49%), Gaps = 22/256 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L+ +V + L + F + G + VRV R+ + S G+ + ++ P +A +A +
Sbjct: 31 LYVGDLDVNVTDSQLYDLFNQVGQVVSVRVCRDLTSRRSLGYGYVNYSNPVDASRALDVL 90
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N + P+ + + P R G +F+KNL + +D + L F FG
Sbjct: 91 NFTPLNGNPIRVMYSHRDPSVRKSGSG---------NIFIKNLDKAIDHKALHDTFSAFG 141
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
+I+ K+ D +G+SKGFGF+QF + +AA KAI ++NG ++ FV G +
Sbjct: 142 SILSCKVATDSSGQSKGFGFVQFDTEEAALKAIEKLNGMLLNDKQVFV-------GPFLR 194
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIE 270
+ + + + + N +FV NL + + + +F FG ITS ++ D K GF+
Sbjct: 195 KQERESVSEKTKFNNVFVKNLAETTSEEDLKNMFGEFGPITSVVVMRDGEGKSKCFGFVN 254
Query: 271 FIMPKHATHAVSTMNG 286
F A +V +NG
Sbjct: 255 FENADDAARSVEALNG 270
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 97/183 (53%), Gaps = 9/183 (4%)
Query: 33 KENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKAR 92
K N + V NL + + L N F +FG + V V R+ +S+ F + F +A ++
Sbjct: 206 KFNNVFVKNLAETTSEEDLKNMFGEFGPITSVVVMRDGEGKSKCFGFVNFENADDAARSV 265
Query: 93 VEMNGHLIGSKPVII--------TFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDE 144
+NG + K + VELK + + V +Y+ ++VKNL +++D+
Sbjct: 266 EALNGKKVDGKEWYVGKAQKKSEREVELK-SRFEQSVKEAADKYQGANLYVKNLDDSIDD 324
Query: 145 EELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVS 204
++LK F FG I K++RD NG S+G GF+ F S + A +A+ EMNGRMI +V+
Sbjct: 325 DKLKELFTGFGTITSCKVMRDPNGISRGSGFVAFSSPEEAARALAEMNGRMIVSKPLYVA 384
Query: 205 LAE 207
LA+
Sbjct: 385 LAQ 387
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 52/91 (57%)
Query: 23 RSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVF 82
+S KE Y+ L+V NL+ S+D+ L F FGT+ +V R+ N SRG + F
Sbjct: 299 QSVKEAADKYQGANLYVKNLDDSIDDDKLKELFTGFGTITSCKVMRDPNGISRGSGFVAF 358
Query: 83 NTPAEAKKARVEMNGHLIGSKPVIITFVELK 113
++P EA +A EMNG +I SKP+ + + K
Sbjct: 359 SSPEEAARALAEMNGRMIVSKPLYVALAQRK 389
>gi|157818977|ref|NP_001099678.1| poly(A) binding protein, cytoplasmic 6 [Rattus norvegicus]
gi|149027506|gb|EDL83096.1| similar to RIKEN cDNA 4932702K14 (predicted) [Rattus norvegicus]
gi|197246058|gb|AAI68959.1| Poly(A) binding protein, cytoplasmic 3 [Rattus norvegicus]
Length = 643
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 94/289 (32%), Positives = 155/289 (53%), Gaps = 31/289 (10%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ V NL+ S+D++ L + F FG + +V ++N S+G+ + F T EA++A +MN
Sbjct: 101 IFVKNLDRSIDSKTLYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEEAERAIEKMN 159
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G + + V + + + R +G K++ V++KNL E +D+E L+ F +FG
Sbjct: 160 GMFLNDRKVFVGRFKSRR-DRQAELGARAKEFTN--VYIKNLGEDMDDERLQDLFSRFGP 216
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKV-- 214
+ VK++ DE+GKSKGFGF+ F ++ A KA+ EMNG+ + +V A+ KKV
Sbjct: 217 ALSVKVMTDESGKSKGFGFVSFERHEDARKAVDEMNGKDLNGKQIYVGRAQ----KKVER 272
Query: 215 ----------FPKVKPPLLQ-PARKN------KIFVANLPSNINNSEFEELFARFGTITS 257
+ KP + Q P ++ ++V NL I++ + F+ FGTITS
Sbjct: 273 QTELKHKFGQMKQDKPKIEQVPQDRSVRCQGVNLYVKNLDDGIDDERLRKEFSPFGTITS 332
Query: 258 SSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
+ + + K GF+ F P+ AT AV+ MNG + +KPL V L+ K
Sbjct: 333 AKVTMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 381
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 87/279 (31%), Positives = 132/279 (47%), Gaps = 37/279 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDE-SRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F G + +RV R++ S G+A + F +A++
Sbjct: 8 YSLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRTTRRSLGYASVNFQQLEDAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KPV I + + P R VG +FVKNL ++D + L
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVG---------NIFVKNLDRSIDSKTLYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+GF+ F + + AE+AI +MNG + FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYGFVHFETQEEAERAIEKMNGMFLNDRKVFVGRFKSRR 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ NL ++++ ++LF+RFG S +++
Sbjct: 178 DRQAELGARAKEF-------------TNVYIKNLGEDMDDERLQDLFSRFGPALSVKVMT 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
D K GF+ F + A AV MNG K + V
Sbjct: 225 DESGKSKGFGFVSFERHEDARKAVDEMNGKDLNGKQIYV 263
>gi|403271841|ref|XP_003927812.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Saimiri boliviensis boliviensis]
Length = 647
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 88/270 (32%), Positives = 147/270 (54%), Gaps = 13/270 (4%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+DN+ L F FG + +V + + S+G+A + F + A +A EMNG
Sbjct: 379 IKNLDKSIDNKTLYEHFSAFGRILSSKVMSD-DQGSKGYAFVHFQNQSAADRAIEEMNGK 437
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ V FV ++ + K + V++KN +D+E LK F K+G +
Sbjct: 438 LLQGCKV---FVGRFKSRQDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTL 494
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKK 213
VK++ D +GKSKGFGF+ F S++AA+KA+ EMNGR I FV+ A+ K+
Sbjct: 495 SVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVARAQKKVERQAELKQ 554
Query: 214 VFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGFI 269
+F ++K ++ + K++V NL I++ + + F+ FG+I+ ++ + K G I
Sbjct: 555 MFEQLKNERIRGCQVVKLYVKNLDDTIDDEKLRKEFSSFGSISRVKVMQEEGQSKGFGLI 614
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299
F P+ A A++ MNG + SKPL + L+
Sbjct: 615 CFSSPEDALKAMTEMNGRILGSKPLSIALA 644
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 71/262 (27%), Positives = 129/262 (49%), Gaps = 21/262 (8%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y+ L+V +L V L +F G + +R+ R++ S G+A + F A+A+K
Sbjct: 284 YRMASLYVGDLHADVTEDLLFRKFSAAGPVLSIRICRDQLTRRSLGYAYVNFLHLADAQK 343
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I K + + + + R +G VF+KNL +++D + L H
Sbjct: 344 ALDTMNFDVIQGKSIRLMWSQRDAYLRRSGIG---------NVFIKNLDKSIDNKTLYEH 394
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVP 210
F FG I+ K++ D+ G SKG+ F+ F + AA++AI EMNG+++Q FV +
Sbjct: 395 FSAFGRILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLQGCKVFVGRFKSRQ 453
Query: 211 GKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KH 265
++ + K +++ N ++++ +++F+++G S +++D K
Sbjct: 454 DREAELRSKASEF-----TNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKG 508
Query: 266 IGFIEFIMPKHATHAVSTMNGH 287
GF+ F + A AV MNG
Sbjct: 509 FGFVSFDSHEAAKKAVEEMNGR 530
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 112/197 (56%), Gaps = 13/197 (6%)
Query: 22 ARSNKENNKVYKENE---LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFA 78
+R ++E K +E +++ N +D++ L + F K+G V+V + + +S+GF
Sbjct: 451 SRQDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFG 510
Query: 79 IIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKD------- 131
+ F++ AKKA EMNG I + + + + K +R + +Q K +
Sbjct: 511 FVSFDSHEAAKKAVEEMNGRDINGQLIFVARAQKKV-ERQAELKQMFEQLKNERIRGCQV 569
Query: 132 -KVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIE 190
K++VKNL +T+D+E+L+ F FG+I VK++++E G+SKGFG I F S + A KA+ E
Sbjct: 570 VKLYVKNLDDTIDDEKLRKEFSSFGSISRVKVMQEE-GQSKGFGLICFSSPEDALKAMTE 628
Query: 191 MNGRMIQHNSTFVSLAE 207
MNGR++ ++LA+
Sbjct: 629 MNGRILGSKPLSIALAQ 645
>gi|35570|emb|CAA68428.1| unnamed protein product [Homo sapiens]
Length = 633
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 97/308 (31%), Positives = 163/308 (52%), Gaps = 26/308 (8%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK + W + D R + N + + NL+ S+DN+AL + F FG +
Sbjct: 78 KGKPVRIMWSQ---RDPSLRKSGVGN-------IFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V ++N S+G+ + F T A++A +MNG L+ + V + + + +R +G
Sbjct: 128 CKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR-KEREAELGA 185
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
K++ V++KN E +D+E LK F G + VK++ DE+GKSKGFGF+ F ++
Sbjct: 186 RAKEFTN--VYIKNFGEDMDDERLKDLF---GPALSVKVMTDESGKSKGFGFVSFERHED 240
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A+KA+ EMNG+ + +V A+ K+ F ++K + + ++V NL
Sbjct: 241 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 300
Query: 239 NINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
I++ + F+ FGTITS+ ++ + K GF+ F P+ AT AV+ MNG + +KPL
Sbjct: 301 GIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 360
Query: 295 KVTLSGTK 302
V L+ K
Sbjct: 361 YVALAQRK 368
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 86/279 (30%), Positives = 132/279 (47%), Gaps = 40/279 (14%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KPV I + + P R VG +F+KNL +++D + L
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVG---------NIFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+GF+ F + +AAE+AI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N ++++ ++L FG S +++
Sbjct: 178 EREAELGARAKEF-------------TNVYIKNFGEDMDDERLKDL---FGPALSVKVMT 221
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
D K GF+ F + A AV MNG K + V
Sbjct: 222 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 260
>gi|390476078|ref|XP_002759394.2| PREDICTED: polyadenylate-binding protein 1-like [Callithrix
jacchus]
Length = 633
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 97/308 (31%), Positives = 163/308 (52%), Gaps = 26/308 (8%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK + W + D R + N + + NL+ S+DN+AL + F FG +
Sbjct: 78 KGKPVRIMWSQ---RDPSLRKSGVGN-------IFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V ++N S+G+ + F T A++A +MNG L+ + V + + + +R +G
Sbjct: 128 CKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR-KEREAELGA 185
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
K++ V++KN E +D+E LK F G + VK++ DE+GKSKGFGF+ F ++
Sbjct: 186 RAKEFTN--VYIKNFGEDMDDERLKDLF---GPALSVKVMTDESGKSKGFGFVSFERHED 240
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A+KA+ EMNG+ + +V A+ K+ F ++K + + ++V NL
Sbjct: 241 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 300
Query: 239 NINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
I++ + F+ FGTITS+ ++ + K GF+ F P+ AT AV+ MNG + +KPL
Sbjct: 301 GIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 360
Query: 295 KVTLSGTK 302
V L+ K
Sbjct: 361 YVALAQRK 368
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 86/279 (30%), Positives = 132/279 (47%), Gaps = 40/279 (14%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KPV I + + P R VG +F+KNL +++D + L
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVG---------NIFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+GF+ F + +AAE+AI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N ++++ ++L FG S +++
Sbjct: 178 EREAELGARAKEF-------------TNVYIKNFGEDMDDERLKDL---FGPALSVKVMT 221
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
D K GF+ F + A AV MNG K + V
Sbjct: 222 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 260
>gi|383862667|ref|XP_003706805.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Megachile rotundata]
Length = 630
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 91/275 (33%), Positives = 156/275 (56%), Gaps = 15/275 (5%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ ++DN+A+ + F FG + +VA++++ S+G+ + F T A K+ ++NG
Sbjct: 103 IKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDKVNGM 162
Query: 99 LIGSKPVII-TFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNI 157
L+ K V + F+ K +R K +G + K + V+VKN E + +++LK F K+G I
Sbjct: 163 LLNGKKVYVGKFIPRK--EREKELGEKAKLFTN--VYVKNFGEDMTDDKLKEMFEKYGTI 218
Query: 158 IEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMI-QHNSTFVSLAEIVPG----- 211
K++ ++GKS+GFGF+ F AAE+A++E+NG+ + + +V A+
Sbjct: 219 TSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQEL 278
Query: 212 KKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIG 267
K+ F ++K L + ++V NL +IN+ FA FGTITS+ ++ + K G
Sbjct: 279 KRKFEQLKLERLSRYQGVNLYVKNLDDSINDERLRREFAPFGTITSAKVMMEDGRSKGFG 338
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F+ F P+ AT AV+ MNG + +KPL V L+ K
Sbjct: 339 FVCFSAPEEATKAVTEMNGRIIVTKPLYVALAQRK 373
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 78/263 (29%), Positives = 134/263 (50%), Gaps = 24/263 (9%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L + L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHADITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I +P+ I + + P R VG VF+KNL + +D + +
Sbjct: 68 ALDTMNFDMIKGRPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKNIDNKAMYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVP 210
F FGNI+ K+ +DE+G SKG+GF+ F + +AA K+I ++NG ++ N V + + +P
Sbjct: 119 FSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDKVNGMLL--NGKKVYVGKFIP 176
Query: 211 GKKVFPKV--KPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLV-----SD 263
K+ ++ K L ++V N ++ + + +E+F ++GTITS ++
Sbjct: 177 RKEREKELGEKAKLF-----TNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKS 231
Query: 264 KHIGFIEFIMPKHATHAVSTMNG 286
+ GF+ F P A AV +NG
Sbjct: 232 RGFGFVAFEDPDAAEQAVLELNG 254
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 49/82 (59%), Gaps = 1/82 (1%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L+V NL+ S++++ L EF FGT+ +V ++ S+GF + F+ P EA KA
Sbjct: 293 YQGVNLYVKNLDDSINDERLRREFAPFGTITSAKVMM-EDGRSKGFGFVCFSAPEEATKA 351
Query: 92 RVEMNGHLIGSKPVIITFVELK 113
EMNG +I +KP+ + + K
Sbjct: 352 VTEMNGRIIVTKPLYVALAQRK 373
>gi|224060514|ref|XP_002300227.1| predicted protein [Populus trichocarpa]
gi|222847485|gb|EEE85032.1| predicted protein [Populus trichocarpa]
Length = 644
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 89/276 (32%), Positives = 149/276 (53%), Gaps = 15/276 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ ++D++AL + F FG + +VA + + +S+G+ + F++ A+KA ++N
Sbjct: 115 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDPSGQSKGYGFVQFDSEEAAQKAIEKLN 174
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G L+ K V + P R + + + + VFVKNL ET EE+L F +FG
Sbjct: 175 GMLLNDKQVYV-----GPFLRKQERDTATDKMRFNNVFVKNLSETTTEEDLNKTFGEFGT 229
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEI-----VPG 211
I + ++RD +GKSK FGF+ F + + A KA+ +NG+ I FV A+ V
Sbjct: 230 ITSIVVMRDGDGKSKCFGFVNFENAEDAAKAVEALNGKKIDDKEWFVGKAQKKYEREVEL 289
Query: 212 KKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHI 266
K+ F + + +++ NL +I + + +ELF+ FGTITS ++ D +
Sbjct: 290 KQRFEQSMKEAADKFQGANLYIKNLDDSIGDEKLKELFSPFGTITSCKVMRDPNGISRGS 349
Query: 267 GFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ F P+ A+ A+ MNG + SKPL V L+ K
Sbjct: 350 GFVAFSTPEEASRALLEMNGKIVVSKPLYVALAQRK 385
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 79/265 (29%), Positives = 128/265 (48%), Gaps = 22/265 (8%)
Query: 28 NNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPA 86
NN + L+V +LE SV + L + F + G + VRV R+ + S G+ + ++ P
Sbjct: 18 NNPNFVTTSLYVGDLEASVTDSQLYDLFNQVGQVVSVRVCRDLTSRRSLGYGYVNYSNPQ 77
Query: 87 EAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEE 146
+A +A +N + P+ + + P R G +F+KNL + +D +
Sbjct: 78 DAARALEMLNFTPLNGSPIRVMYSHRDPTIRKSGAG---------NIFIKNLDKAIDHKA 128
Query: 147 LKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLA 206
L F FGNI+ K+ D +G+SKG+GF+QF S +AA+KAI ++NG ++ +V
Sbjct: 129 LHDTFSAFGNILSCKVATDPSGQSKGYGFVQFDSEEAAQKAIEKLNGMLLNDKQVYV--- 185
Query: 207 EIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD--- 263
G + + + R N +FV NL + + F FGTITS ++ D
Sbjct: 186 ----GPFLRKQERDTATDKMRFNNVFVKNLSETTTEEDLNKTFGEFGTITSIVVMRDGDG 241
Query: 264 --KHIGFIEFIMPKHATHAVSTMNG 286
K GF+ F + A AV +NG
Sbjct: 242 KSKCFGFVNFENAEDAAKAVEALNG 266
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 98/182 (53%), Gaps = 11/182 (6%)
Query: 35 NELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVE 94
N + V NL + + L F +FGT+ + V R+ + +S+ F + F +A KA
Sbjct: 204 NNVFVKNLSETTTEEDLNKTFGEFGTITSIVVMRDGDGKSKCFGFVNFENAEDAAKAVEA 263
Query: 95 MNGHLIGSKPVII--------TFVELKPGQR-SKPVGPEEKQYKKDKVFVKNLVETVDEE 145
+NG I K + VELK QR + + +++ +++KNL +++ +E
Sbjct: 264 LNGKKIDDKEWFVGKAQKKYEREVELK--QRFEQSMKEAADKFQGANLYIKNLDDSIGDE 321
Query: 146 ELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL 205
+LK F FG I K++RD NG S+G GF+ F + + A +A++EMNG+++ +V+L
Sbjct: 322 KLKELFSPFGTITSCKVMRDPNGISRGSGFVAFSTPEEASRALLEMNGKIVVSKPLYVAL 381
Query: 206 AE 207
A+
Sbjct: 382 AQ 383
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 57/97 (58%)
Query: 23 RSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVF 82
+S KE ++ L++ NL+ S+ ++ L F FGT+ +V R+ N SRG + F
Sbjct: 295 QSMKEAADKFQGANLYIKNLDDSIGDEKLKELFSPFGTITSCKVMRDPNGISRGSGFVAF 354
Query: 83 NTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSK 119
+TP EA +A +EMNG ++ SKP+ + + K +R++
Sbjct: 355 STPEEASRALLEMNGKIVVSKPLYVALAQRKEDRRAR 391
>gi|119612225|gb|EAW91819.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_e [Homo
sapiens]
Length = 633
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 97/308 (31%), Positives = 163/308 (52%), Gaps = 26/308 (8%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK + W + D R + N + + NL+ S+DN+AL + F FG +
Sbjct: 78 KGKPVRIMWSQ---RDPSLRKSGVGN-------IFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V ++N S+G+ + F T A++A +MNG L+ + V + + + +R +G
Sbjct: 128 CKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR-KEREAELGA 185
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
K++ V++KN E +D+E LK F G + VK++ DE+GKSKGFGF+ F ++
Sbjct: 186 RAKEFTN--VYIKNFGEDMDDERLKDLF---GPALSVKVMTDESGKSKGFGFVSFERHED 240
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A+KA+ EMNG+ + +V A+ K+ F ++K + + ++V NL
Sbjct: 241 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 300
Query: 239 NINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
I++ + F+ FGTITS+ ++ + K GF+ F P+ AT AV+ MNG + +KPL
Sbjct: 301 GIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 360
Query: 295 KVTLSGTK 302
V L+ K
Sbjct: 361 YVALAQRK 368
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 86/279 (30%), Positives = 132/279 (47%), Gaps = 40/279 (14%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KPV I + + P R VG +F+KNL +++D + L
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVG---------NIFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+GF+ F + +AAE+AI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N ++++ ++L FG S +++
Sbjct: 178 EREAELGARAKEF-------------TNVYIKNFGEDMDDERLKDL---FGPALSVKVMT 221
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
D K GF+ F + A AV MNG K + V
Sbjct: 222 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 260
>gi|383862669|ref|XP_003706806.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2
[Megachile rotundata]
Length = 612
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 91/275 (33%), Positives = 156/275 (56%), Gaps = 15/275 (5%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ ++DN+A+ + F FG + +VA++++ S+G+ + F T A K+ ++NG
Sbjct: 103 IKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDKVNGM 162
Query: 99 LIGSKPVII-TFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNI 157
L+ K V + F+ K +R K +G + K + V+VKN E + +++LK F K+G I
Sbjct: 163 LLNGKKVYVGKFIPRK--EREKELGEKAKLFTN--VYVKNFGEDMTDDKLKEMFEKYGTI 218
Query: 158 IEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMI-QHNSTFVSLAEIVPG----- 211
K++ ++GKS+GFGF+ F AAE+A++E+NG+ + + +V A+
Sbjct: 219 TSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQEL 278
Query: 212 KKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIG 267
K+ F ++K L + ++V NL +IN+ FA FGTITS+ ++ + K G
Sbjct: 279 KRKFEQLKLERLSRYQGVNLYVKNLDDSINDERLRREFAPFGTITSAKVMMEDGRSKGFG 338
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F+ F P+ AT AV+ MNG + +KPL V L+ K
Sbjct: 339 FVCFSAPEEATKAVTEMNGRIIVTKPLYVALAQRK 373
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 78/263 (29%), Positives = 134/263 (50%), Gaps = 24/263 (9%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L + L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHADITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I +P+ I + + P R VG VF+KNL + +D + +
Sbjct: 68 ALDTMNFDMIKGRPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKNIDNKAMYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVP 210
F FGNI+ K+ +DE+G SKG+GF+ F + +AA K+I ++NG ++ N V + + +P
Sbjct: 119 FSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDKVNGMLL--NGKKVYVGKFIP 176
Query: 211 GKKVFPKV--KPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLV-----SD 263
K+ ++ K L ++V N ++ + + +E+F ++GTITS ++
Sbjct: 177 RKEREKELGEKAKLF-----TNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKS 231
Query: 264 KHIGFIEFIMPKHATHAVSTMNG 286
+ GF+ F P A AV +NG
Sbjct: 232 RGFGFVAFEDPDAAEQAVLELNG 254
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 49/82 (59%), Gaps = 1/82 (1%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L+V NL+ S++++ L EF FGT+ +V ++ S+GF + F+ P EA KA
Sbjct: 293 YQGVNLYVKNLDDSINDERLRREFAPFGTITSAKVMM-EDGRSKGFGFVCFSAPEEATKA 351
Query: 92 RVEMNGHLIGSKPVIITFVELK 113
EMNG +I +KP+ + + K
Sbjct: 352 VTEMNGRIIVTKPLYVALAQRK 373
>gi|307103841|gb|EFN52098.1| hypothetical protein CHLNCDRAFT_59028 [Chlorella variabilis]
Length = 634
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 90/273 (32%), Positives = 148/273 (54%), Gaps = 16/273 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ SVDN+AL + F FG + +VA++ ES+G+ + F A+ A ++N
Sbjct: 131 IFIKNLDRSVDNKALHDTFSAFGNILSCKVAQDLKGESKGYGFVHFEKDESARLAIEKVN 190
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G L+ K V + L+ +RS + + K VFVKNL E V ++E+K+ F + G
Sbjct: 191 GMLLEGKKVYVGPF-LRRSERSS-----DSEVKFTNVFVKNLDEAVSDDEVKAMFAEHGT 244
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFP 216
+ I+RD+ GKSKGFGFI F + A A+ +NG+ + +V A+ ++
Sbjct: 245 VNSCIIMRDDEGKSKGFGFINFEEPEQAASAVQALNGKDVNCKELYVGRAQKKAEREAML 304
Query: 217 KVKPPLLQPARKNK-----IFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHI 266
+ K L+ R K ++V NL +I++ F++FGTITS+ ++ D +
Sbjct: 305 RAKFEELRSERIAKYQGMNLYVKNLHDDIDDETLRTEFSQFGTITSAKVMVDSAGKSRGF 364
Query: 267 GFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299
GF+ + P+ AT AV+ MNG + K KP+ V L+
Sbjct: 365 GFVCYASPEEATRAVTEMNGRMIKGKPIYVALA 397
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 103/192 (53%), Gaps = 7/192 (3%)
Query: 23 RSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVF 82
RS + ++ K + V NL+ +V + + F + GT+ + R+ +S+GF I F
Sbjct: 207 RSERSSDSEVKFTNVFVKNLDEAVSDDEVKAMFAEHGTVNSCIIMRDDEGKSKGFGFINF 266
Query: 83 NTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEK-------QYKKDKVFV 135
P +A A +NG + K + + + K + + E+ +Y+ ++V
Sbjct: 267 EEPEQAASAVQALNGKDVNCKELYVGRAQKKAEREAMLRAKFEELRSERIAKYQGMNLYV 326
Query: 136 KNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRM 195
KNL + +D+E L++ F +FG I K++ D GKS+GFGF+ + S + A +A+ EMNGRM
Sbjct: 327 KNLHDDIDDETLRTEFSQFGTITSAKVMVDSAGKSRGFGFVCYASPEEATRAVTEMNGRM 386
Query: 196 IQHNSTFVSLAE 207
I+ +V+LA+
Sbjct: 387 IKGKPIYVALAQ 398
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 57/99 (57%), Gaps = 4/99 (4%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L+V NL +D++ L EF +FGT+ +V + +SRGF + + +P EA +A
Sbjct: 319 YQGMNLYVKNLHDDIDDETLRTEFSQFGTITSAKVMVDSAGKSRGFGFVCYASPEEATRA 378
Query: 92 RVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKK 130
EMNG +I KP+ + + + +R++ E+QY++
Sbjct: 379 VTEMNGRMIKGKPIYVALAQRRDVRRAQL----EQQYQQ 413
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 79/178 (44%), Gaps = 30/178 (16%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSY---KAAEKAI 188
++V +L V E +L F + G + +++ RD +S G+ ++ + S AAE+A+
Sbjct: 40 LYVGDLDRDVTEAQLFEVFSQIGPVASIRVCRDAVTRRSLGYAYVNYNSVLDPAAAERAL 99
Query: 189 IEMN-----GRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNS 243
++N GR + ++ + P + + IF+ NL +++N
Sbjct: 100 DQLNYTPLVGRPM----------------RIMWSHRDPAFRKSGVGNIFIKNLDRSVDNK 143
Query: 244 EFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
+ F+ FG I S + D K GF+ F + A A+ +NG + + K + V
Sbjct: 144 ALHDTFSAFGNILSCKVAQDLKGESKGYGFVHFEKDESARLAIEKVNGMLLEGKKVYV 201
>gi|2393873|gb|AAB70164.1| poly(A)-binding protein testis-specific isoform [Mus musculus]
Length = 603
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 91/274 (33%), Positives = 150/274 (54%), Gaps = 15/274 (5%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL ++DN+AL + F FG + +V ++N S+G + F T A++A +MNG
Sbjct: 78 IKNLNKTIDNKALYDTFSAFGNILSCKVVSDENG-SKGHGFVHFETEEAAERAIEKMNGM 136
Query: 99 LIGSKPVII-TFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNI 157
L+ + V + F K +R +G K++ V++KN + +D+E L F +FG I
Sbjct: 137 LLNDRKVFVGRFKSQK--EREAELGTGTKEFTN--VYIKNFGDRMDDETLNGLFGRFGQI 192
Query: 158 IEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKV--- 214
+ VK++ DE GKSKGFGF+ F ++ A+KA+ EMNG+ + +V A+ +
Sbjct: 193 LSVKVMTDEGGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYVGRAQKKDDRHTELK 252
Query: 215 --FPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGF 268
F +V + ++V NL I++ ++ F+ FGTITS+ ++++ K GF
Sbjct: 253 HKFEQVTQDKSIRYQGINLYVKNLDDGIDDERLQKEFSPFGTITSTKVMTEGGRSKGFGF 312
Query: 269 IEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
+ F P+ AT AVS MNG + +KPL V L+ K
Sbjct: 313 VCFSSPEEATKAVSEMNGRIVATKPLYVALAQRK 346
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 86/260 (33%), Positives = 124/260 (47%), Gaps = 37/260 (14%)
Query: 51 LINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITF 109
L +F G + +RV R+ S G+A + F PA+A++A MN +I KPV I +
Sbjct: 2 LYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADAERALDTMNFDVIKGKPVRIMW 61
Query: 110 VELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGK 169
+ P R VG VF+KNL +T+D + L F FGNI+ K+V DENG
Sbjct: 62 SQRDPSLRRSGVG---------NVFIKNLNKTIDNKALYDTFSAFGNILSCKVVSDENG- 111
Query: 170 SKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL--------AEIVPGKKVFPKVKPP 221
SKG GF+ F + +AAE+AI +MNG ++ FV AE+ G K F
Sbjct: 112 SKGHGFVHFETEEAAERAIEKMNGMLLNDRKVFVGRFKSQKEREAELGTGTKEF------ 165
Query: 222 LLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKH 276
+++ N +++ LF RFG I S +++D K GF+ F +
Sbjct: 166 -------TNVYIKNFGDRMDDETLNGLFGRFGQILSVKVMTDEGGKSKGFGFVSFERHED 218
Query: 277 ATHAVSTMNGHVFKSKPLKV 296
A AV MNG K + V
Sbjct: 219 AQKAVDEMNGKELNGKHIYV 238
>gi|6754972|ref|NP_035163.1| poly A binding protein, cytoplasmic 2 [Mus musculus]
gi|473092|emb|CAA53572.1| polyA binding protein, testis-enriched isoform [Mus musculus]
gi|29835142|gb|AAH51134.1| Poly(A) binding protein, cytoplasmic 2 [Mus musculus]
gi|148678113|gb|EDL10060.1| poly A binding protein, cytoplasmic 2 [Mus musculus]
Length = 628
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 92/277 (33%), Positives = 152/277 (54%), Gaps = 21/277 (7%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL ++DN+AL + F FG + +V ++N S+G + F T A++A +MNG
Sbjct: 103 IKNLNKTIDNKALYDTFSAFGNILSCKVVSDENG-SKGHGFVHFETEEAAERAIEKMNGM 161
Query: 99 LIGSKPVII-TFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNI 157
L+ + V + F K +R +G K++ V++KN + +D+E L F +FG I
Sbjct: 162 LLNDRKVFVGRFKSQK--EREAELGTGTKEFTN--VYIKNFGDRMDDETLNGLFGRFGQI 217
Query: 158 IEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPK 217
+ VK++ DE GKSKGFGF+ F ++ A+KA+ EMNG+ + +V A+ + K
Sbjct: 218 LSVKVMTDEGGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYVGRAQKKDDRHTELK 277
Query: 218 VKPPLLQPARKNK--------IFVANLPSNINNSEFEELFARFGTITSSSLVSD----KH 265
K + ++K ++V NL I++ ++ F+ FGTITS+ ++++ K
Sbjct: 278 HK---FEQVTQDKSIRYQGINLYVKNLDDGIDDERLQKEFSPFGTITSTKVMTEGGRSKG 334
Query: 266 IGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ F P+ AT AVS MNG + +KPL V L+ K
Sbjct: 335 FGFVCFSSPEEATKAVSEMNGRIVATKPLYVALAQRK 371
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 91/274 (33%), Positives = 131/274 (47%), Gaps = 37/274 (13%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L P V L +F G + +RV R+ S G+A + F PA+A++A M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADAERALDTM 72
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N +I KPV I + + P R VG VF+KNL +T+D + L F FG
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRRSGVG---------NVFIKNLNKTIDNKALYDTFSAFG 123
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL--------AE 207
NI+ K+V DENG SKG GF+ F + +AAE+AI +MNG ++ FV AE
Sbjct: 124 NILSCKVVSDENG-SKGHGFVHFETEEAAERAIEKMNGMLLNDRKVFVGRFKSQKEREAE 182
Query: 208 IVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD---- 263
+ G K F +++ N +++ LF RFG I S +++D
Sbjct: 183 LGTGTKEF-------------TNVYIKNFGDRMDDETLNGLFGRFGQILSVKVMTDEGGK 229
Query: 264 -KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
K GF+ F + A AV MNG K + V
Sbjct: 230 SKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYV 263
>gi|357475273|ref|XP_003607922.1| Poly(A)-binding protein [Medicago truncatula]
gi|355508977|gb|AES90119.1| Poly(A)-binding protein [Medicago truncatula]
Length = 654
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 91/279 (32%), Positives = 154/279 (55%), Gaps = 15/279 (5%)
Query: 34 ENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARV 93
+ + + NL+ ++D++AL + F FG + +VA + + +S+G+ + F+T A+KA
Sbjct: 121 QGNIFIKNLDKAIDHKALHDTFSSFGNILSCKVAVDGSGQSKGYGFVQFDTEEAAQKAIE 180
Query: 94 EMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIK 153
++NG L+ K V + P R + + K + VFVKNL E+ ++ELK F +
Sbjct: 181 KLNGMLLNDKQVYVG-----PFLRKQERESTGDRAKFNNVFVKNLSESTTDDELKKTFGE 235
Query: 154 FGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKK 213
FG I ++RD +GKSK FGF+ F S A +A+ +NG+ I +V A+ ++
Sbjct: 236 FGTITSAVVMRDGDGKSKCFGFVNFESTDDAARAVEALNGKKIDDKEWYVGKAQKKSERE 295
Query: 214 VFPKVK--PPLLQPARKNK---IFVANLPSNINNSEFEELFARFGTITSSSLVSD----- 263
K+K + + A K + ++V NL +I + + +ELF+ +GTITS ++ D
Sbjct: 296 HELKIKFEQSMKEAADKYQGANLYVKNLDDSIADEKLKELFSSYGTITSCKVMRDPNGVS 355
Query: 264 KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
+ GF+ F P+ A+ A+ MNG + SKPL VTL+ K
Sbjct: 356 RGSGFVAFSTPEEASRALLEMNGKMVASKPLYVTLAQRK 394
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 76/256 (29%), Positives = 130/256 (50%), Gaps = 22/256 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L+ +V + L + F + G + VRV R+ S G+ + ++ P +A +A +
Sbjct: 36 LYVGDLDMNVTDSQLYDLFNQLGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARALDVL 95
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N + ++P+ I + P R G +F+KNL + +D + L F FG
Sbjct: 96 NFTPLNNRPIRIMYSHRDPSIRKSGQG---------NIFIKNLDKAIDHKALHDTFSSFG 146
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ D +G+SKG+GF+QF + +AA+KAI ++NG ++ +V G +
Sbjct: 147 NILSCKVAVDGSGQSKGYGFVQFDTEEAAQKAIEKLNGMLLNDKQVYV-------GPFLR 199
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIE 270
+ + A+ N +FV NL + + E ++ F FGTITS+ ++ D K GF+
Sbjct: 200 KQERESTGDRAKFNNVFVKNLSESTTDDELKKTFGEFGTITSAVVMRDGDGKSKCFGFVN 259
Query: 271 FIMPKHATHAVSTMNG 286
F A AV +NG
Sbjct: 260 FESTDDAARAVEALNG 275
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 96/182 (52%), Gaps = 7/182 (3%)
Query: 33 KENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKAR 92
K N + V NL S + L F +FGT+ V R+ + +S+ F + F + +A +A
Sbjct: 211 KFNNVFVKNLSESTTDDELKKTFGEFGTITSAVVMRDGDGKSKCFGFVNFESTDDAARAV 270
Query: 93 VEMNGHLIGSKPVIITFVELKPGQR-------SKPVGPEEKQYKKDKVFVKNLVETVDEE 145
+NG I K + + K + + + +Y+ ++VKNL +++ +E
Sbjct: 271 EALNGKKIDDKEWYVGKAQKKSEREHELKIKFEQSMKEAADKYQGANLYVKNLDDSIADE 330
Query: 146 ELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL 205
+LK F +G I K++RD NG S+G GF+ F + + A +A++EMNG+M+ +V+L
Sbjct: 331 KLKELFSSYGTITSCKVMRDPNGVSRGSGFVAFSTPEEASRALLEMNGKMVASKPLYVTL 390
Query: 206 AE 207
A+
Sbjct: 391 AQ 392
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 58/97 (59%)
Query: 23 RSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVF 82
+S KE Y+ L+V NL+ S+ ++ L F +GT+ +V R+ N SRG + F
Sbjct: 304 QSMKEAADKYQGANLYVKNLDDSIADEKLKELFSSYGTITSCKVMRDPNGVSRGSGFVAF 363
Query: 83 NTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSK 119
+TP EA +A +EMNG ++ SKP+ +T + K +R++
Sbjct: 364 STPEEASRALLEMNGKMVASKPLYVTLAQRKEDRRAR 400
>gi|260815191|ref|XP_002602357.1| hypothetical protein BRAFLDRAFT_234358 [Branchiostoma floridae]
gi|229287666|gb|EEN58369.1| hypothetical protein BRAFLDRAFT_234358 [Branchiostoma floridae]
Length = 620
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 96/310 (30%), Positives = 159/310 (51%), Gaps = 25/310 (8%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK + W + D R + N + + NL+ S+DN+A+ + F FG +
Sbjct: 79 KGKPMRIMWSQ---RDPSLRKSGVGN-------VFIKNLDKSIDNKAIYDTFSAFGNILS 128
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVII-TFVELKPGQRSKPVG 122
+VA+++ S+GF + F T A +A ++NG ++ K V + FV +R +G
Sbjct: 129 CKVAQDETGSSKGFGFVHFETQEAADEAMAKVNGMMLNGKKVYVGRFVPRS--ERLAAMG 186
Query: 123 PEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYK 182
+K++ ++VKN + D+++L+ F K+G ++ K++ D+ G S+GFGF+ +
Sbjct: 187 EAQKRFTN--IYVKNFGDKWDDDKLRDFFEKYGKVVSAKVMTDDMGHSRGFGFVSYEEPD 244
Query: 183 AAEKAIIEMN------GRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANL 236
+A KA EMN GR I K F K+K +Q + ++V NL
Sbjct: 245 SAGKACEEMNDMEVDDGRRIYVGRAQKKAERQAELKAKFEKIKQERIQRYQGVNLYVKNL 304
Query: 237 PSNINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSK 292
S I+ + F++FGTITSS ++++ K GF+ F P+ AT AV+ MNG + SK
Sbjct: 305 DSTIDEEILRKEFSQFGTITSSKVMTENGRSKGFGFVCFSSPEEATKAVTEMNGRIVVSK 364
Query: 293 PLKVTLSGTK 302
PL V L+ K
Sbjct: 365 PLYVALAQRK 374
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 77/267 (28%), Positives = 129/267 (48%), Gaps = 20/267 (7%)
Query: 25 NKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFN 83
N Y L+V +L+P + L +F G + +RV R+ S G+A + F
Sbjct: 2 NPGGGPTYPCASLYVGDLDPDITEAMLYEKFSPAGPVLSIRVCRDMVTRRSLGYAYVNFQ 61
Query: 84 TPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVD 143
PA+A++A MN I KP+ I + + P R VG VF+KNL +++D
Sbjct: 62 QPADAERALDTMNFDTIKGKPMRIMWSQRDPSLRKSGVG---------NVFIKNLDKSID 112
Query: 144 EEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFV 203
+ + F FGNI+ K+ +DE G SKGFGF+ F + +AA++A+ ++NG M+ N V
Sbjct: 113 NKAIYDTFSAFGNILSCKVAQDETGSSKGFGFVHFETQEAADEAMAKVNGMML--NGKKV 170
Query: 204 SLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD 263
+ VP + + R I+V N ++ + + F ++G + S+ +++D
Sbjct: 171 YVGRFVPRSERLAAMGEAQ---KRFTNIYVKNFGDKWDDDKLRDFFEKYGKVVSAKVMTD 227
Query: 264 -----KHIGFIEFIMPKHATHAVSTMN 285
+ GF+ + P A A MN
Sbjct: 228 DMGHSRGFGFVSYEEPDSAGKACEEMN 254
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 57/94 (60%), Gaps = 1/94 (1%)
Query: 26 KENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTP 85
+E + Y+ L+V NL+ ++D + L EF +FGT+ +V +N S+GF + F++P
Sbjct: 288 QERIQRYQGVNLYVKNLDSTIDEEILRKEFSQFGTITSSKVM-TENGRSKGFGFVCFSSP 346
Query: 86 AEAKKARVEMNGHLIGSKPVIITFVELKPGQRSK 119
EA KA EMNG ++ SKP+ + + K ++++
Sbjct: 347 EEATKAVTEMNGRIVVSKPLYVALAQRKEDRKAQ 380
>gi|443722844|gb|ELU11546.1| hypothetical protein CAPTEDRAFT_164502 [Capitella teleta]
Length = 629
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 89/276 (32%), Positives = 159/276 (57%), Gaps = 15/276 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ ++DN+AL + F FG + ++A ++N S G+ + F T A+ + ++N
Sbjct: 102 IFIKNLDKNIDNKALYDTFSAFGNILSCKIAMDQNG-SLGYGFVHFETEEAARNSIEKVN 160
Query: 97 GHLIGSKPVII-TFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
G L+ K V + F+ K +R + +G + K++ V+VKNL ET+D+++L+ F FG
Sbjct: 161 GMLLNGKKVFVGRFMSRK--ERLEMLGDKAKKFTN--VYVKNLNETMDDKKLREMFEVFG 216
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
II K++ E G+ +GFGF+ F ++AA KA+ E+N + ++ +V A+ ++
Sbjct: 217 KIISAKMMNTEEGQKRGFGFVSFDDHEAAAKAVEELNNKEVEGKEIYVGRAQKKAERQAE 276
Query: 216 PKVKPPLLQPARKNK-----IFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHI 266
K K ++ R N+ ++V NL I++ + F++FGTITS+ ++++ K
Sbjct: 277 LKEKFERMKMERINRYQGVNLYVKNLDEQIDDERLRKEFSQFGTITSARVMTEGGRTKGF 336
Query: 267 GFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ F P+ AT AV+ MNG + +KPL V L+ K
Sbjct: 337 GFVCFSSPEEATKAVTEMNGRIVVAKPLYVALAQRK 372
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 79/273 (28%), Positives = 131/273 (47%), Gaps = 25/273 (9%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 9 YPMASLYVGDLHPDVTEAMLFEKFSTAGPVLSIRVCRDLITRRSLGYAYVNFQQPADAER 68
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN I +P+ I + + P R VG +F+KNL + +D + L
Sbjct: 69 ALDTMNFDAIKGRPIRIMWSQRDPSLRKSGVG---------NIFIKNLDKNIDNKALYDT 119
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVP 210
F FGNI+ KI D+NG S G+GF+ F + +AA +I ++NG ++ FV
Sbjct: 120 FSAFGNILSCKIAMDQNG-SLGYGFVHFETEEAARNSIEKVNGMLLNGKKVFV------- 171
Query: 211 GKKVFPKVKPPLLQPARK--NKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----- 263
G+ + K + +L K ++V NL +++ + E+F FG I S+ +++
Sbjct: 172 GRFMSRKERLEMLGDKAKKFTNVYVKNLNETMDDKKLREMFEVFGKIISAKMMNTEEGQK 231
Query: 264 KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
+ GF+ F + A AV +N + K + V
Sbjct: 232 RGFGFVSFDDHEAAAKAVEELNNKEVEGKEIYV 264
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 49/82 (59%), Gaps = 1/82 (1%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L+V NL+ +D++ L EF +FGT+ RV + ++GF + F++P EA KA
Sbjct: 292 YQGVNLYVKNLDEQIDDERLRKEFSQFGTITSARVM-TEGGRTKGFGFVCFSSPEEATKA 350
Query: 92 RVEMNGHLIGSKPVIITFVELK 113
EMNG ++ +KP+ + + K
Sbjct: 351 VTEMNGRIVVAKPLYVALAQRK 372
>gi|386780450|dbj|BAM15222.1| poly(A)-binding protein [Nicotiana tabacum]
Length = 657
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 90/278 (32%), Positives = 150/278 (53%), Gaps = 19/278 (6%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S+DN+AL + F FG + ++A + N +S+G+ + ++ A+ A ++N
Sbjct: 128 IFIKNLDKSIDNKALHDTFSSFGNILSCKIATDSNGQSKGYGFVQYDNEESAQGAIDKLN 187
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G L+ K V + L+ +R G K V+VKNL E+ ++ELK F +FGN
Sbjct: 188 GMLMNDKQVYVGHF-LRKQERESTTG----MTKFQNVYVKNLSESTTDDELKKVFGEFGN 242
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFP 216
I ++RD +GKSK FGFI F + + A KA+ +NG+ +V A+ ++
Sbjct: 243 ITSAVVMRDADGKSKCFGFINFETAEDAAKAVESLNGKKFDDKEWYVGKAQKKSEREQ-- 300
Query: 217 KVKPPLLQPARKN-------KIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----K 264
++K Q A++ ++V NL I++ + +ELF+ FGTITS ++ D +
Sbjct: 301 ELKSKFEQTAKEAVDKYQGLNLYVKNLDDTIDDEKLKELFSEFGTITSCKVMRDPSGISR 360
Query: 265 HIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ F + A+ A+S MNG + SKPL V L+ K
Sbjct: 361 GSGFVAFSTSEEASRALSEMNGKMIVSKPLYVALAQRK 398
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 73/262 (27%), Positives = 129/262 (49%), Gaps = 22/262 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKKARVEM 95
L+V +LE +V + L + F + G + VRV R+ S G+ + ++ P +A +A +
Sbjct: 40 LYVGDLEFNVTDSQLYDLFNQVGQVVSVRVCRDLSTRRSLGYGYVNYSNPNDASRAMEML 99
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N + K + + + P R +F+KNL +++D + L F FG
Sbjct: 100 NFTPVNGKSIRVMYSHRDPTLRKS---------GSANIFIKNLDKSIDNKALHDTFSSFG 150
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ KI D NG+SKG+GF+Q+ + ++A+ AI ++NG ++ +V G +
Sbjct: 151 NILSCKIATDSNGQSKGYGFVQYDNEESAQGAIDKLNGMLMNDKQVYV-------GHFLR 203
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIE 270
+ + + ++V NL + + E +++F FG ITS+ ++ D K GFI
Sbjct: 204 KQERESTTGMTKFQNVYVKNLSESTTDDELKKVFGEFGNITSAVVMRDADGKSKCFGFIN 263
Query: 271 FIMPKHATHAVSTMNGHVFKSK 292
F + A AV ++NG F K
Sbjct: 264 FETAEDAAKAVESLNGKKFDDK 285
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 57/97 (58%)
Query: 23 RSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVF 82
++ KE Y+ L+V NL+ ++D++ L F +FGT+ +V R+ + SRG + F
Sbjct: 308 QTAKEAVDKYQGLNLYVKNLDDTIDDEKLKELFSEFGTITSCKVMRDPSGISRGSGFVAF 367
Query: 83 NTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSK 119
+T EA +A EMNG +I SKP+ + + K +R+K
Sbjct: 368 STSEEASRALSEMNGKMIVSKPLYVALAQRKEERRAK 404
>gi|126342235|ref|XP_001367420.1| PREDICTED: polyadenylate-binding protein 1-like [Monodelphis
domestica]
Length = 635
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 95/308 (30%), Positives = 163/308 (52%), Gaps = 23/308 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK + W + D R + N + + NL+ S+DN+AL + F FG +
Sbjct: 78 KGKPVRIMWSQ---RDPSLRKSGVGN-------IFIKNLDKSIDNKALFDTFSAFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V +++ S+G+ + F T A++A +MNG L+ + V + + + +R +G
Sbjct: 128 CKVVCDEHG-SKGYGFVHFETRDAAERAIDKMNGMLLNDRKVFVGRFKSR-KEREAELGA 185
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
K++ V++KN E +D+ LK F KFG + VK++ DE+G SKGFGF+ F ++
Sbjct: 186 RAKEFTN--VYIKNFGEDMDDLRLKRLFGKFGPSLSVKVMTDESGTSKGFGFVNFERHED 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A+KA+ EMNG+ + +V A+ K+ F ++K + + ++V NL
Sbjct: 244 AQKAVEEMNGKELNGKKIYVGRAQKKGERQTELKRKFEQLKQDRITRYQGVNLYVKNLDD 303
Query: 239 NINNSEFEELFARFGTITSSSLV----SDKHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
I++ + F+ FGTITS+ ++ +K GF+ F P+ AT AV+ MNG + +KPL
Sbjct: 304 GIDDERLRKEFSPFGTITSAKVMMEGGRNKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Query: 295 KVTLSGTK 302
+ L+ K
Sbjct: 364 YIALAQRK 371
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 86/279 (30%), Positives = 132/279 (47%), Gaps = 37/279 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPTASLYVGDLHPEVSEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KPV I + + P R VG +F+KNL +++D + L
Sbjct: 68 ALETMNFDVIKGKPVRIMWSQRDPSLRKSGVG---------NIFIKNLDKSIDNKALFDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DE+G SKG+GF+ F + AAE+AI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDEHG-SKGYGFVHFETRDAAERAIDKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N ++++ + LF +FG S +++
Sbjct: 178 EREAELGARAKEF-------------TNVYIKNFGEDMDDLRLKRLFGKFGPSLSVKVMT 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
D K GF+ F + A AV MNG K + V
Sbjct: 225 DESGTSKGFGFVNFERHEDAQKAVEEMNGKELNGKKIYV 263
>gi|157817831|ref|NP_001099621.1| poly(A) binding protein, cytoplasmic 2 [Rattus norvegicus]
gi|149017412|gb|EDL76463.1| poly A binding protein, cytoplasmic 2 (predicted) [Rattus
norvegicus]
Length = 630
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 90/274 (32%), Positives = 152/274 (55%), Gaps = 15/274 (5%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL ++DN+AL + F FG + +V ++N S+G + F T A++A +MNG
Sbjct: 103 IKNLNKTIDNKALYDTFSAFGNILSCKVVCDENG-SKGHGFVHFETEEAAERAIEKMNGM 161
Query: 99 LIGSKPVII-TFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNI 157
L+ + V + F K +R +G K++ V++KN + +D++ L F +FG +
Sbjct: 162 LLNDRKVFVGQFKSRK--EREAELGTRTKEFTN--VYIKNFGDRMDDKTLNGLFGRFGQV 217
Query: 158 IEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPGK 212
+ VK++ DE GKSKGFGF+ F ++ A+KA+ EMNG+ + +V A+ + K
Sbjct: 218 LSVKVMTDEGGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYVGPAQKKVDRHIELK 277
Query: 213 KVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGF 268
+ F +V + ++V NL I++ ++ F+ FGTITS+ ++++ K GF
Sbjct: 278 RKFEQVTQDRGIRYQGINLYVKNLDDGIDDERLQKEFSPFGTITSTKVMTEGGRSKGFGF 337
Query: 269 IEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
+ F P+ AT AVS MNG + +KPL V L+ K
Sbjct: 338 VCFSSPEEATKAVSEMNGRIVATKPLYVALAQRK 371
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 89/274 (32%), Positives = 130/274 (47%), Gaps = 37/274 (13%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L P V L +F G + +RV R+ S G+A + F PA+A++A M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADAERALDTM 72
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N +I KPV I + + P R VG VF+KNL +T+D + L F FG
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRRSGVG---------NVFIKNLNKTIDNKALYDTFSAFG 123
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL--------AE 207
NI+ K+V DENG SKG GF+ F + +AAE+AI +MNG ++ FV AE
Sbjct: 124 NILSCKVVCDENG-SKGHGFVHFETEEAAERAIEKMNGMLLNDRKVFVGQFKSRKEREAE 182
Query: 208 IVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD---- 263
+ K F +++ N +++ LF RFG + S +++D
Sbjct: 183 LGTRTKEF-------------TNVYIKNFGDRMDDKTLNGLFGRFGQVLSVKVMTDEGGK 229
Query: 264 -KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
K GF+ F + A AV MNG K + V
Sbjct: 230 SKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYV 263
>gi|380494250|emb|CCF33289.1| Poly(A) RNA binding protein [Colletotrichum higginsianum]
Length = 677
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 85/268 (31%), Positives = 135/268 (50%), Gaps = 24/268 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+PSV L F + G++ +RV R+ S G+A + +NT ++ +KA E+
Sbjct: 66 LYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTSDGEKALEEL 125
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI +P I + + P R G VF+KNL +D + L F FG
Sbjct: 126 NYTLIKGRPCRIMWSQRDPALRKTGQG---------NVFIKNLDVAIDNKALHDTFAAFG 176
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ +DENG SKG+GF+ + + +AA +AI +NG ++ +V G +
Sbjct: 177 NILSCKVAQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYV-------GHHIP 229
Query: 216 PKVKPPLLQPARKN--KIFVANLPSNINNSEFEELFARFGTITSSSLVSDKH-----IGF 268
K + + + N I++ N+ + + EF +LF FG +TSSSL D+ GF
Sbjct: 230 KKDRQSKFEEMKANFTNIYIKNISGEVTDDEFRDLFTPFGDVTSSSLARDQEGKSRGFGF 289
Query: 269 IEFIMPKHATHAVSTMNGHVFKSKPLKV 296
+ F + A AV +NG F+ + L V
Sbjct: 290 VNFTTHEAAAKAVDDLNGKDFRGQDLYV 317
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 65/235 (27%), Positives = 131/235 (55%), Gaps = 8/235 (3%)
Query: 34 ENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARV 93
+ + + NL+ ++DN+AL + F FG + +VA+++N S+G+ + + T A +A
Sbjct: 151 QGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYETDEAASQAIK 210
Query: 94 EMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIK 153
+NG L+ K V + K ++SK EE + +++KN+ V ++E + F
Sbjct: 211 HVNGMLLNEKKVYVGHHIPKKDRQSKF---EEMKANFTNIYIKNISGEVTDDEFRDLFTP 267
Query: 154 FGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGK- 212
FG++ + RD+ GKS+GFGF+ F +++AA KA+ ++NG+ + +V A+ +
Sbjct: 268 FGDVTSSSLARDQEGKSRGFGFVNFTTHEAAAKAVDDLNGKDFRGQDLYVGRAQKKHERE 327
Query: 213 -KVFPKVKPPLLQPARKNK---IFVANLPSNINNSEFEELFARFGTITSSSLVSD 263
++ + ++ A K + +++ NL ++++ + +LFA FG ITS+ ++ D
Sbjct: 328 EELRKSYEAARMEKANKYQGVNLYIKNLDDDVDDEKLRQLFADFGPITSAKVMRD 382
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/230 (24%), Positives = 96/230 (41%), Gaps = 59/230 (25%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+++ N+ V + + F FG + +AR++ +SRGF + F T A KA ++N
Sbjct: 247 IYIKNISGEVTDDEFRDLFTPFGDVTSSSLARDQEGKSRGFGFVNFTTHEAAAKAVDDLN 306
Query: 97 GHLIGSKPVIITFVELKPGQ-----RSKPVGPEEK--QYKKDKVFVKNLVETVDEEELKS 149
G + + + + K + +S EK +Y+ +++KNL + VD+E+L+
Sbjct: 307 GKDFRGQDLYVGRAQKKHEREEELRKSYEAARMEKANKYQGVNLYIKNLDDDVDDEKLRQ 366
Query: 150 HFIKFGNIIEVKIVRDE------------------------------------------- 166
F FG I K++RD
Sbjct: 367 LFADFGPITSAKVMRDNATDSGNEDEGSSEEKETEAKKDEEEEEKPEEAKTDDKEDADKK 426
Query: 167 ---------NGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
+GKSKGFGF+ F + A KA+ EMN RM+ +V+LA+
Sbjct: 427 SDKKSDKKLHGKSKGFGFVCFSNPDDATKAVAEMNQRMVNGKPLYVALAQ 476
Score = 38.9 bits (89), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 55/152 (36%), Gaps = 54/152 (35%)
Query: 20 EGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK------NDE 73
E AR K N Y+ L++ NL+ VD++ L F FG + +V R+ DE
Sbjct: 335 EAARMEKANK--YQGVNLYIKNLDDDVDDEKLRQLFADFGPITSAKVMRDNATDSGNEDE 392
Query: 74 ----------------------------------------------SRGFAIIVFNTPAE 87
S+GF + F+ P +
Sbjct: 393 GSSEEKETEAKKDEEEEEKPEEAKTDDKEDADKKSDKKSDKKLHGKSKGFGFVCFSNPDD 452
Query: 88 AKKARVEMNGHLIGSKPVIITFVELKPGQRSK 119
A KA EMN ++ KP+ + + K ++S+
Sbjct: 453 ATKAVAEMNQRMVNGKPLYVALAQRKDVRKSQ 484
>gi|350408506|ref|XP_003488427.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2 [Bombus
impatiens]
Length = 621
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 91/275 (33%), Positives = 157/275 (57%), Gaps = 15/275 (5%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ ++DN+A+ + F FG + +VA++++ S+G+ + F T A K+ +NG
Sbjct: 103 IKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGM 162
Query: 99 LIGSKPVII-TFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNI 157
L+ K V + F+ K +R K +G + K + V+VKN E + +++LK F K+G I
Sbjct: 163 LLNGKKVYVGKFIPRK--EREKELGEKAKLFTN--VYVKNFGEDMTDDKLKDMFEKYGTI 218
Query: 158 IEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMI-QHNSTFVSLAEIVPGKKVFP 216
K++ ++GKS+GFGF+ F AAE+A++E+NG+ + + +V A+ ++
Sbjct: 219 TSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQEL 278
Query: 217 KVKPPLLQPARKNK-----IFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIG 267
K K L+ R N+ ++V NL +I++ + FA FGTITS+ ++ + K G
Sbjct: 279 KRKFEQLKLERLNRYQGVNLYVKNLDDSIDDERLRKEFAPFGTITSAKVMMEEGRSKGFG 338
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F+ F P+ AT AV+ MNG + +KPL V L+ K
Sbjct: 339 FVCFSAPEEATKAVTEMNGRIIVTKPLYVALAQRK 373
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 77/263 (29%), Positives = 133/263 (50%), Gaps = 24/263 (9%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L + L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I +P+ I + + P R VG VF+KNL + +D + +
Sbjct: 68 ALDTMNFDMIKGRPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKNIDNKAMYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVP 210
F FGNI+ K+ +DE+G SKG+GF+ F + +AA K+I +NG ++ N V + + +P
Sbjct: 119 FSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLL--NGKKVYVGKFIP 176
Query: 211 GKKVFPKV--KPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLV-----SD 263
K+ ++ K L ++V N ++ + + +++F ++GTITS ++
Sbjct: 177 RKEREKELGEKAKLF-----TNVYVKNFGEDMTDDKLKDMFEKYGTITSHKVMIKDDGKS 231
Query: 264 KHIGFIEFIMPKHATHAVSTMNG 286
+ GF+ F P A AV +NG
Sbjct: 232 RGFGFVAFEDPDAAEQAVLELNG 254
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L+V NL+ S+D++ L EF FGT+ +V + S+GF + F+ P EA KA
Sbjct: 293 YQGVNLYVKNLDDSIDDERLRKEFAPFGTITSAKVMMEEG-RSKGFGFVCFSAPEEATKA 351
Query: 92 RVEMNGHLIGSKPVIITFVELK 113
EMNG +I +KP+ + + K
Sbjct: 352 VTEMNGRIIVTKPLYVALAQRK 373
>gi|389610655|dbj|BAM18939.1| polyA-binding protein [Papilio polytes]
Length = 611
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 90/275 (32%), Positives = 152/275 (55%), Gaps = 15/275 (5%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ ++DN+A+ + F FG + +VA+++ S+G+ + F T A K+ ++NG
Sbjct: 103 IKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVNGM 162
Query: 99 LIGSKPVII-TFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNI 157
L+ K V + F+ K +R K +G + K + V+VKN E +E L+ F K+G I
Sbjct: 163 LLNGKKVYVGRFIPRK--EREKELGEKAKLFTN--VYVKNFGEDFSDEMLREMFEKYGRI 218
Query: 158 IEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGR-MIQHNSTFVSLAEIVPG----- 211
K++ E+G S+GFGF+ F AAE+A +E+NG+ +++ +V A+
Sbjct: 219 TSHKVMYKEDGSSRGFGFVAFEDPDAAERACMELNGKELVEGKPLYVGRAQKKAERQKEL 278
Query: 212 KKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIG 267
K+ F ++K L + ++V NL I++ + FA FGTITS+ ++ + K G
Sbjct: 279 KRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFG 338
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F+ F P+ AT AV+ MNG + +KPL V L+ K
Sbjct: 339 FVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 373
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 83/276 (30%), Positives = 136/276 (49%), Gaps = 29/276 (10%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L + L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I +P+ I + + P R VG VF+KNL +T+D + +
Sbjct: 68 ALEGMNFDIIKGRPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKTIDNKAMYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVP 210
F FGNI+ K+ +DE G SKG+GF+ F + +AA K+I ++NG ++ N V + +P
Sbjct: 119 FSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVNGMLL--NGKKVYVGRFIP 176
Query: 211 GKKVFPKVKPPLLQPARKNKIF----VANLPSNINNSEFEELFARFGTITSSSLV----- 261
K+ ++ K K+F V N + ++ E+F ++G ITS ++
Sbjct: 177 RKEREKEL-------GEKAKLFTNVYVKNFGEDFSDEMLREMFEKYGRITSHKVMYKEDG 229
Query: 262 SDKHIGFIEFIMPKHATHAVSTMNG-HVFKSKPLKV 296
S + GF+ F P A A +NG + + KPL V
Sbjct: 230 SSRGFGFVAFEDPDAAERACMELNGKELVEGKPLYV 265
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 103/180 (57%), Gaps = 11/180 (6%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
++V N ++ L F+K+G + +V ++ SRGF + F P A++A +E+N
Sbjct: 194 VYVKNFGEDFSDEMLREMFEKYGRITSHKVMYKEDGSSRGFGFVAFEDPDAAERACMELN 253
Query: 97 G-HLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKV--------FVKNLVETVDEEEL 147
G L+ KP+ + + K +R K + + +Q K +++ +VKNL +T+D+E L
Sbjct: 254 GKELVEGKPLYVGRAQ-KKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERL 312
Query: 148 KSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
+ F FG I K++ E+G+SKGFGF+ F S + A KA+ EMNGR++ +V+LA+
Sbjct: 313 RKEFAPFGTITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 371
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L+V NL+ ++D++ L EF FGT+ +V ++ S+GF + F++P EA KA
Sbjct: 293 YQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML-EDGRSKGFGFVCFSSPEEATKA 351
Query: 92 RVEMNGHLIGSKPVIITFVELK 113
EMNG ++G+KP+ + + K
Sbjct: 352 VTEMNGRIVGTKPLYVALAQRK 373
>gi|340719922|ref|XP_003398393.1| PREDICTED: polyadenylate-binding protein 1-like isoform 3 [Bombus
terrestris]
Length = 621
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 91/275 (33%), Positives = 157/275 (57%), Gaps = 15/275 (5%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ ++DN+A+ + F FG + +VA++++ S+G+ + F T A K+ +NG
Sbjct: 103 IKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGM 162
Query: 99 LIGSKPVII-TFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNI 157
L+ K V + F+ K +R K +G + K + V+VKN E + +++LK F K+G I
Sbjct: 163 LLNGKKVYVGKFIPRK--EREKELGEKAKLFTN--VYVKNFGEDMTDDKLKEMFEKYGTI 218
Query: 158 IEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMI-QHNSTFVSLAEIVPGKKVFP 216
K++ ++GKS+GFGF+ F AAE+A++E+NG+ + + +V A+ ++
Sbjct: 219 TSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQEL 278
Query: 217 KVKPPLLQPARKNK-----IFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIG 267
K K L+ R N+ ++V NL +I++ + FA FGTITS+ ++ + K G
Sbjct: 279 KRKFEQLKLERLNRYQGVNLYVKNLDDSIDDERLRKEFAPFGTITSAKVMMEEGRSKGFG 338
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F+ F P+ AT AV+ MNG + +KPL V L+ K
Sbjct: 339 FVCFSAPEEATKAVTEMNGRIIVTKPLYVALAQRK 373
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 78/263 (29%), Positives = 133/263 (50%), Gaps = 24/263 (9%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L + L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I +P+ I + + P R VG VF+KNL + +D + +
Sbjct: 68 ALDTMNFDMIKGRPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKNIDNKAMYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVP 210
F FGNI+ K+ +DE+G SKG+GF+ F + +AA K+I +NG ++ N V + + +P
Sbjct: 119 FSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLL--NGKKVYVGKFIP 176
Query: 211 GKKVFPKV--KPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLV-----SD 263
K+ ++ K L ++V N ++ + + +E+F ++GTITS ++
Sbjct: 177 RKEREKELGEKAKLF-----TNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKS 231
Query: 264 KHIGFIEFIMPKHATHAVSTMNG 286
+ GF+ F P A AV +NG
Sbjct: 232 RGFGFVAFEDPDAAEQAVLELNG 254
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L+V NL+ S+D++ L EF FGT+ +V + S+GF + F+ P EA KA
Sbjct: 293 YQGVNLYVKNLDDSIDDERLRKEFAPFGTITSAKVMMEEG-RSKGFGFVCFSAPEEATKA 351
Query: 92 RVEMNGHLIGSKPVIITFVELK 113
EMNG +I +KP+ + + K
Sbjct: 352 VTEMNGRIIVTKPLYVALAQRK 373
>gi|350408504|ref|XP_003488426.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Bombus
impatiens]
Length = 630
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 91/275 (33%), Positives = 157/275 (57%), Gaps = 15/275 (5%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ ++DN+A+ + F FG + +VA++++ S+G+ + F T A K+ +NG
Sbjct: 103 IKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGM 162
Query: 99 LIGSKPVII-TFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNI 157
L+ K V + F+ K +R K +G + K + V+VKN E + +++LK F K+G I
Sbjct: 163 LLNGKKVYVGKFIPRK--EREKELGEKAKLFTN--VYVKNFGEDMTDDKLKDMFEKYGTI 218
Query: 158 IEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMI-QHNSTFVSLAEIVPGKKVFP 216
K++ ++GKS+GFGF+ F AAE+A++E+NG+ + + +V A+ ++
Sbjct: 219 TSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQEL 278
Query: 217 KVKPPLLQPARKNK-----IFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIG 267
K K L+ R N+ ++V NL +I++ + FA FGTITS+ ++ + K G
Sbjct: 279 KRKFEQLKLERLNRYQGVNLYVKNLDDSIDDERLRKEFAPFGTITSAKVMMEEGRSKGFG 338
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F+ F P+ AT AV+ MNG + +KPL V L+ K
Sbjct: 339 FVCFSAPEEATKAVTEMNGRIIVTKPLYVALAQRK 373
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 77/263 (29%), Positives = 133/263 (50%), Gaps = 24/263 (9%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L + L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I +P+ I + + P R VG VF+KNL + +D + +
Sbjct: 68 ALDTMNFDMIKGRPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKNIDNKAMYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVP 210
F FGNI+ K+ +DE+G SKG+GF+ F + +AA K+I +NG ++ N V + + +P
Sbjct: 119 FSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLL--NGKKVYVGKFIP 176
Query: 211 GKKVFPKV--KPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLV-----SD 263
K+ ++ K L ++V N ++ + + +++F ++GTITS ++
Sbjct: 177 RKEREKELGEKAKLF-----TNVYVKNFGEDMTDDKLKDMFEKYGTITSHKVMIKDDGKS 231
Query: 264 KHIGFIEFIMPKHATHAVSTMNG 286
+ GF+ F P A AV +NG
Sbjct: 232 RGFGFVAFEDPDAAEQAVLELNG 254
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L+V NL+ S+D++ L EF FGT+ +V + S+GF + F+ P EA KA
Sbjct: 293 YQGVNLYVKNLDDSIDDERLRKEFAPFGTITSAKVMMEEG-RSKGFGFVCFSAPEEATKA 351
Query: 92 RVEMNGHLIGSKPVIITFVELK 113
EMNG +I +KP+ + + K
Sbjct: 352 VTEMNGRIIVTKPLYVALAQRK 373
>gi|301764847|ref|XP_002917846.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Ailuropoda melanoleuca]
Length = 492
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 87/270 (32%), Positives = 145/270 (53%), Gaps = 13/270 (4%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+DN+ L F FG + +V + + SRG+A + F A +A EMNG
Sbjct: 201 IKNLDKSIDNKTLYEHFSAFGKILSSKVMSD-DQGSRGYAFVHFQNQNAADRAIEEMNGA 259
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ + FV ++ + + K + V+VKN + +D+E LK F K+G +
Sbjct: 260 LLKDCRL---FVGRFKNRKDREAELQNKVNEFTNVYVKNFGDDMDDERLKEVFSKYGKTL 316
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKK 213
VK++ D GKSKGFGF+ F S++AA+KA+ EMNG+ + FV A+ K+
Sbjct: 317 SVKVMTDSGGKSKGFGFVSFDSHEAAKKAVEEMNGKDVNGQLLFVGRAQKKSERQAELKQ 376
Query: 214 VFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGFI 269
+F ++K + + K+++ NL I++ + F+ FG+I+ ++ + K G I
Sbjct: 377 MFEQLKQERFRRCQGMKLYIKNLDDTIDDEKLWREFSSFGSISRVKIMREEGRSKGFGLI 436
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299
F P+ AT A++ MNG + SKPL + L+
Sbjct: 437 CFSSPEEATKAMAEMNGRILGSKPLYIALA 466
Score = 110 bits (275), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 77/267 (28%), Positives = 132/267 (49%), Gaps = 33/267 (12%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y++ L+V +L V L +F G + +R+ R+ S G+A + F A+A+K
Sbjct: 106 YRQASLYVGDLSADVTEDLLFKKFSAVGPVLSIRICRDLVTRRSLGYAYVNFLKLADAQK 165
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KP+ + + + R +G VF+KNL +++D + L H
Sbjct: 166 ALDTMNFDMIKGKPIRLMWSQRDAYLRKSGIG---------NVFIKNLDKSIDNKTLYEH 216
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVP 210
F FG I+ K++ D+ G S+G+ F+ F + AA++AI EMNG +++ FV
Sbjct: 217 FSAFGKILSSKVMSDDQG-SRGYAFVHFQNQNAADRAIEEMNGALLKDCRLFV------- 268
Query: 211 GKKVFPKVKPPLLQPARKNK------IFVANLPSNINNSEFEELFARFGTITSSSLVSD- 263
G+ K + LQ NK ++V N ++++ +E+F+++G S +++D
Sbjct: 269 GRFKNRKDREAELQ----NKVNEFTNVYVKNFGDDMDDERLKEVFSKYGKTLSVKVMTDS 324
Query: 264 ----KHIGFIEFIMPKHATHAVSTMNG 286
K GF+ F + A AV MNG
Sbjct: 325 GGKSKGFGFVSFDSHEAAKKAVEEMNG 351
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 65/193 (33%), Positives = 109/193 (56%), Gaps = 10/193 (5%)
Query: 23 RSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVF 82
R + NKV + ++V N +D++ L F K+G V+V + +S+GF + F
Sbjct: 277 REAELQNKVNEFTNVYVKNFGDDMDDERLKEVFSKYGKTLSVKVMTDSGGKSKGFGFVSF 336
Query: 83 NTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKD--------KVF 134
++ AKKA EMNG + + + + + K +R + +Q K++ K++
Sbjct: 337 DSHEAAKKAVEEMNGKDVNGQLLFVGRAQ-KKSERQAELKQMFEQLKQERFRRCQGMKLY 395
Query: 135 VKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGR 194
+KNL +T+D+E+L F FG+I VKI+R+E G+SKGFG I F S + A KA+ EMNGR
Sbjct: 396 IKNLDDTIDDEKLWREFSSFGSISRVKIMREE-GRSKGFGLICFSSPEEATKAMAEMNGR 454
Query: 195 MIQHNSTFVSLAE 207
++ +++LA+
Sbjct: 455 ILGSKPLYIALAQ 467
>gi|441613453|ref|XP_004088139.1| PREDICTED: polyadenylate-binding protein 1-like [Nomascus
leucogenys]
Length = 638
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 97/308 (31%), Positives = 163/308 (52%), Gaps = 23/308 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK L W + D R + N + V NL+ S++N+AL + FG +
Sbjct: 78 KGKPLRIMWSQ---RDPSLRKSGVGN-------IFVKNLDKSINNKALYDTVSAFGNVLS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V ++N S+G+ + F T A++A +MNG + + V + + + +R +G
Sbjct: 128 CKVVCDENG-SKGYGFVHFETREAAERAIEKMNGIPLNDRKVFVGRFKSR-KEREAELGA 185
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
K++ V++KN E +D+E LK F KFG + VK++ D++GKSKGFGF+ F ++
Sbjct: 186 RAKEFPN--VYIKNFGEDMDDERLKDLFGKFGPTLSVKVMTDQSGKSKGFGFVSFEKHED 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNK-----IFVANLPS 238
A+KA+ EMNG+ + +V A+ ++ K K ++ R + ++V NL
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKCKFEQMKQDRITRYQVVNLYVKNLDD 303
Query: 239 NINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
I++ + F+ FGTITS+ ++ + K GF+ F P+ AT AV+ MNG + +KPL
Sbjct: 304 AIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Query: 295 KVTLSGTK 302
V L+ K
Sbjct: 364 YVALAQRK 371
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 84/279 (30%), Positives = 131/279 (46%), Gaps = 37/279 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F + G + +RV R+ S +A + F P +A+
Sbjct: 8 YPTASLYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITPHSSNYAYVNFQHPKDAEH 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KP+ I + + P R VG +FVKNL ++++ + L
Sbjct: 68 ALDTMNFDVIKGKPLRIMWSQRDPSLRKSGVG---------NIFVKNLDKSINNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
FGN++ K+V DENG SKG+GF+ F + +AAE+AI +MNG + FV
Sbjct: 119 VSAFGNVLSCKVVCDENG-SKGYGFVHFETREAAERAIEKMNGIPLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K FP V ++ N ++++ ++LF +FG S +++
Sbjct: 178 EREAELGARAKEFPNV-------------YIKNFGEDMDDERLKDLFGKFGPTLSVKVMT 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
D K GF+ F + A AV MNG K + V
Sbjct: 225 DQSGKSKGFGFVSFEKHEDAQKAVDEMNGKELNGKQIYV 263
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTM 284
++V +L ++ + E F+R G I S + D + ++ F PK A HA+ TM
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITPHSSNYAYVNFQHPKDAEHALDTM 72
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N V K KPL++ S P +
Sbjct: 73 NFDVIKGKPLRIMWSQRDPSL 93
>gi|380019828|ref|XP_003693803.1| PREDICTED: polyadenylate-binding protein 1-like [Apis florea]
Length = 630
Score = 141 bits (355), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 91/275 (33%), Positives = 157/275 (57%), Gaps = 15/275 (5%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ ++DN+A+ + F FG + +VA++++ S+G+ + F T A K+ +NG
Sbjct: 103 IKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGM 162
Query: 99 LIGSKPVII-TFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNI 157
L+ K V + F+ K +R K +G + K + V+VKN E + +++LK F K+G I
Sbjct: 163 LLNGKKVYVGKFIPRK--EREKELGEKAKLFTN--VYVKNFGEDMTDDKLKEMFEKYGTI 218
Query: 158 IEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMI-QHNSTFVSLAEIVPGKKVFP 216
K++ ++GKS+GFGF+ F AAE+A++E+NG+ + + +V A+ ++
Sbjct: 219 TSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQEL 278
Query: 217 KVKPPLLQPARKNK-----IFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIG 267
K K L+ R N+ ++V NL +I++ + FA FGTITS+ ++ + K G
Sbjct: 279 KRKFEQLKLERLNRYQGVNLYVKNLDDSIDDERLRKEFAPFGTITSAKVMMEEGRSKGFG 338
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F+ F P+ AT AV+ MNG + +KPL V L+ K
Sbjct: 339 FVCFSAPEEATKAVTEMNGRIIVTKPLYVALAQRK 373
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 78/263 (29%), Positives = 133/263 (50%), Gaps = 24/263 (9%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L + L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I +P+ I + + P R VG VF+KNL + +D + +
Sbjct: 68 ALDTMNFDMIKGRPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKNIDNKAMYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVP 210
F FGNI+ K+ +DE+G SKG+GF+ F + +AA K+I +NG ++ N V + + +P
Sbjct: 119 FSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLL--NGKKVYVGKFIP 176
Query: 211 GKKVFPKV--KPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLV-----SD 263
K+ ++ K L ++V N ++ + + +E+F ++GTITS ++
Sbjct: 177 RKEREKELGEKAKLF-----TNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKS 231
Query: 264 KHIGFIEFIMPKHATHAVSTMNG 286
+ GF+ F P A AV +NG
Sbjct: 232 RGFGFVAFEDPDAAEQAVLELNG 254
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L+V NL+ S+D++ L EF FGT+ +V + S+GF + F+ P EA KA
Sbjct: 293 YQGVNLYVKNLDDSIDDERLRKEFAPFGTITSAKVMMEEG-RSKGFGFVCFSAPEEATKA 351
Query: 92 RVEMNGHLIGSKPVIITFVELK 113
EMNG +I +KP+ + + K
Sbjct: 352 VTEMNGRIIVTKPLYVALAQRK 373
>gi|194753367|ref|XP_001958985.1| GF12652 [Drosophila ananassae]
gi|190620283|gb|EDV35807.1| GF12652 [Drosophila ananassae]
Length = 639
Score = 141 bits (355), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 93/276 (33%), Positives = 154/276 (55%), Gaps = 16/276 (5%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ ++DN+A+ + F FG + +VA ++ S+G+ + F T A + ++NG
Sbjct: 94 IKNLDKTIDNKAIYDTFSAFGNILSCKVATDEKANSKGYGFVHFETEEAANTSIDKVNGM 153
Query: 99 LIGSKPVII-TFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNI 157
L+ K V + F+ K +R K +G + K + V+VKN E D+E+LK F +G I
Sbjct: 154 LLNGKKVYVGKFIPRK--EREKELGEKAKLFTN--VYVKNFTEDFDDEKLKEFFEPYGKI 209
Query: 158 IEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGR-MIQHNSTFVSLAEIVPGKKVFP 216
K++ E+GKSKGFGF+ F + +AAE A+ +NG+ M + S +V+ A+ ++
Sbjct: 210 TSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQQEL 269
Query: 217 KVKPPLLQPARKNK-----IFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHI 266
K K L+ R + ++V NL +I++ + F+ +GTITS+ +++D K
Sbjct: 270 KRKFEELKKKRHDSAFGVNLYVKNLDDSIDDERLCKEFSPYGTITSAKVMTDEEGRSKGF 329
Query: 267 GFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ FI AT AV+ +NG V SKPL V L+ K
Sbjct: 330 GFVCFISANEATCAVTELNGRVVGSKPLYVALAQRK 365
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 77/258 (29%), Positives = 132/258 (51%), Gaps = 24/258 (9%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L ++ L ++F G + +RV R+ + S G+A + F PA+A++A M
Sbjct: 4 LYVGDLHQDINESNLFDKFSSAGPVLSIRVCRDVMSRRSLGYAYVNFQQPADAERALDTM 63
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N L+ +KP+ I + + P R VG VF+KNL +T+D + + F FG
Sbjct: 64 NFDLLRNKPIRIMWSQRDPSLRRSGVG---------NVFIKNLDKTIDNKAIYDTFSAFG 114
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ DE SKG+GF+ F + +AA +I ++NG ++ N V + + +P K+
Sbjct: 115 NILSCKVATDEKANSKGYGFVHFETEEAANTSIDKVNGMLL--NGKKVYVGKFIPRKERE 172
Query: 216 PKV--KPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS-----DKHIGF 268
++ K L ++V N + ++ + +E F +G ITS ++S K GF
Sbjct: 173 KELGEKAKLF-----TNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGF 227
Query: 269 IEFIMPKHATHAVSTMNG 286
+ F + A AV +NG
Sbjct: 228 VAFETTEAAEAAVQALNG 245
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 94/179 (52%), Gaps = 8/179 (4%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
++V N D++ L F+ +G + +V ++ +S+GF + F T A+ A +N
Sbjct: 185 VYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALN 244
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDK--------VFVKNLVETVDEEELK 148
G +G + K +R + + + ++ KK + ++VKNL +++D+E L
Sbjct: 245 GKDMGEGKSLYVARAQKKAERQQELKRKFEELKKKRHDSAFGVNLYVKNLDDSIDDERLC 304
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
F +G I K++ DE G+SKGFGF+ F S A A+ E+NGR++ +V+LA+
Sbjct: 305 KEFSPYGTITSAKVMTDEEGRSKGFGFVCFISANEATCAVTELNGRVVGSKPLYVALAQ 363
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 46/77 (59%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L+V NL+ S+D++ L EF +GT+ +V ++ S+GF + F + EA A E+N
Sbjct: 289 LYVKNLDDSIDDERLCKEFSPYGTITSAKVMTDEEGRSKGFGFVCFISANEATCAVTELN 348
Query: 97 GHLIGSKPVIITFVELK 113
G ++GSKP+ + + K
Sbjct: 349 GRVVGSKPLYVALAQRK 365
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGF--IEFIMPKHATHAVSTM 284
++V +L +IN S + F+ G + S + D + +G+ + F P A A+ TM
Sbjct: 4 LYVGDLHQDINESNLFDKFSSAGPVLSIRVCRDVMSRRSLGYAYVNFQQPADAERALDTM 63
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N + ++KP+++ S P +
Sbjct: 64 NFDLLRNKPIRIMWSQRDPSL 84
>gi|340719924|ref|XP_003398394.1| PREDICTED: polyadenylate-binding protein 1-like isoform 4 [Bombus
terrestris]
Length = 612
Score = 141 bits (355), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 91/275 (33%), Positives = 157/275 (57%), Gaps = 15/275 (5%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ ++DN+A+ + F FG + +VA++++ S+G+ + F T A K+ +NG
Sbjct: 103 IKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGM 162
Query: 99 LIGSKPVII-TFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNI 157
L+ K V + F+ K +R K +G + K + V+VKN E + +++LK F K+G I
Sbjct: 163 LLNGKKVYVGKFIPRK--EREKELGEKAKLFTN--VYVKNFGEDMTDDKLKEMFEKYGTI 218
Query: 158 IEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMI-QHNSTFVSLAEIVPGKKVFP 216
K++ ++GKS+GFGF+ F AAE+A++E+NG+ + + +V A+ ++
Sbjct: 219 TSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQEL 278
Query: 217 KVKPPLLQPARKNK-----IFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIG 267
K K L+ R N+ ++V NL +I++ + FA FGTITS+ ++ + K G
Sbjct: 279 KRKFEQLKLERLNRYQGVNLYVKNLDDSIDDERLRKEFAPFGTITSAKVMMEEGRSKGFG 338
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F+ F P+ AT AV+ MNG + +KPL V L+ K
Sbjct: 339 FVCFSAPEEATKAVTEMNGRIIVTKPLYVALAQRK 373
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 78/263 (29%), Positives = 133/263 (50%), Gaps = 24/263 (9%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L + L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I +P+ I + + P R VG VF+KNL + +D + +
Sbjct: 68 ALDTMNFDMIKGRPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKNIDNKAMYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVP 210
F FGNI+ K+ +DE+G SKG+GF+ F + +AA K+I +NG ++ N V + + +P
Sbjct: 119 FSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLL--NGKKVYVGKFIP 176
Query: 211 GKKVFPKV--KPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLV-----SD 263
K+ ++ K L ++V N ++ + + +E+F ++GTITS ++
Sbjct: 177 RKEREKELGEKAKLF-----TNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKS 231
Query: 264 KHIGFIEFIMPKHATHAVSTMNG 286
+ GF+ F P A AV +NG
Sbjct: 232 RGFGFVAFEDPDAAEQAVLELNG 254
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L+V NL+ S+D++ L EF FGT+ +V + S+GF + F+ P EA KA
Sbjct: 293 YQGVNLYVKNLDDSIDDERLRKEFAPFGTITSAKVMMEEG-RSKGFGFVCFSAPEEATKA 351
Query: 92 RVEMNGHLIGSKPVIITFVELK 113
EMNG +I +KP+ + + K
Sbjct: 352 VTEMNGRIIVTKPLYVALAQRK 373
>gi|389608229|dbj|BAM17726.1| polyA-binding protein [Papilio xuthus]
Length = 619
Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 90/275 (32%), Positives = 152/275 (55%), Gaps = 15/275 (5%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ ++DN+A+ + F FG + +VA+++ S+G+ + F T A K+ ++NG
Sbjct: 103 IKNLDKTIDNKAMYDTFTAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVNGM 162
Query: 99 LIGSKPVII-TFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNI 157
L+ K V + F+ K +R K +G + K + V+VKN E +E L+ F K+G I
Sbjct: 163 LLNGKKVYVGRFIPRK--EREKELGEKAKLFTN--VYVKNFGEDFSDEMLREMFEKYGRI 218
Query: 158 IEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGR-MIQHNSTFVSLAEIVPG----- 211
K++ E+G S+GFGF+ F AAE+A +E+NG+ +++ +V A+
Sbjct: 219 TSHKVMYKEDGSSRGFGFVAFEDPDAAERACMELNGKELVEGKPLYVGRAQKKAERQKEL 278
Query: 212 KKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIG 267
K+ F ++K L + ++V NL I++ + FA FGTITS+ ++ + K G
Sbjct: 279 KRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFG 338
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F+ F P+ AT AV+ MNG + +KPL V L+ K
Sbjct: 339 FVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 373
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 83/276 (30%), Positives = 136/276 (49%), Gaps = 29/276 (10%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L + L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I +P+ I + + P R VG VF+KNL +T+D + +
Sbjct: 68 ALEGMNFDIIKGRPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKTIDNKAMYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVP 210
F FGNI+ K+ +DE G SKG+GF+ F + +AA K+I ++NG ++ N V + +P
Sbjct: 119 FTAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVNGMLL--NGKKVYVGRFIP 176
Query: 211 GKKVFPKVKPPLLQPARKNKIF----VANLPSNINNSEFEELFARFGTITSSSLV----- 261
K+ ++ K K+F V N + ++ E+F ++G ITS ++
Sbjct: 177 RKEREKEL-------GEKAKLFTNVYVKNFGEDFSDEMLREMFEKYGRITSHKVMYKEDG 229
Query: 262 SDKHIGFIEFIMPKHATHAVSTMNG-HVFKSKPLKV 296
S + GF+ F P A A +NG + + KPL V
Sbjct: 230 SSRGFGFVAFEDPDAAERACMELNGKELVEGKPLYV 265
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 103/180 (57%), Gaps = 11/180 (6%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
++V N ++ L F+K+G + +V ++ SRGF + F P A++A +E+N
Sbjct: 194 VYVKNFGEDFSDEMLREMFEKYGRITSHKVMYKEDGSSRGFGFVAFEDPDAAERACMELN 253
Query: 97 G-HLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKV--------FVKNLVETVDEEEL 147
G L+ KP+ + + K +R K + + +Q K +++ +VKNL +T+D+E L
Sbjct: 254 GKELVEGKPLYVGRAQ-KKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERL 312
Query: 148 KSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
+ F FG I K++ E+G+SKGFGF+ F S + A KA+ EMNGR++ +V+LA+
Sbjct: 313 RKEFAPFGTITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 371
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L+V NL+ ++D++ L EF FGT+ +V ++ S+GF + F++P EA KA
Sbjct: 293 YQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML-EDGRSKGFGFVCFSSPEEATKA 351
Query: 92 RVEMNGHLIGSKPVIITFVELK 113
EMNG ++G+KP+ + + K
Sbjct: 352 VTEMNGRIVGTKPLYVALAQRK 373
>gi|340719918|ref|XP_003398391.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Bombus
terrestris]
Length = 630
Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 91/275 (33%), Positives = 157/275 (57%), Gaps = 15/275 (5%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ ++DN+A+ + F FG + +VA++++ S+G+ + F T A K+ +NG
Sbjct: 103 IKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGM 162
Query: 99 LIGSKPVII-TFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNI 157
L+ K V + F+ K +R K +G + K + V+VKN E + +++LK F K+G I
Sbjct: 163 LLNGKKVYVGKFIPRK--EREKELGEKAKLFTN--VYVKNFGEDMTDDKLKEMFEKYGTI 218
Query: 158 IEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMI-QHNSTFVSLAEIVPGKKVFP 216
K++ ++GKS+GFGF+ F AAE+A++E+NG+ + + +V A+ ++
Sbjct: 219 TSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQEL 278
Query: 217 KVKPPLLQPARKNK-----IFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIG 267
K K L+ R N+ ++V NL +I++ + FA FGTITS+ ++ + K G
Sbjct: 279 KRKFEQLKLERLNRYQGVNLYVKNLDDSIDDERLRKEFAPFGTITSAKVMMEEGRSKGFG 338
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F+ F P+ AT AV+ MNG + +KPL V L+ K
Sbjct: 339 FVCFSAPEEATKAVTEMNGRIIVTKPLYVALAQRK 373
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 78/263 (29%), Positives = 133/263 (50%), Gaps = 24/263 (9%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L + L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I +P+ I + + P R VG VF+KNL + +D + +
Sbjct: 68 ALDTMNFDMIKGRPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKNIDNKAMYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVP 210
F FGNI+ K+ +DE+G SKG+GF+ F + +AA K+I +NG ++ N V + + +P
Sbjct: 119 FSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLL--NGKKVYVGKFIP 176
Query: 211 GKKVFPKV--KPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLV-----SD 263
K+ ++ K L ++V N ++ + + +E+F ++GTITS ++
Sbjct: 177 RKEREKELGEKAKLF-----TNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKS 231
Query: 264 KHIGFIEFIMPKHATHAVSTMNG 286
+ GF+ F P A AV +NG
Sbjct: 232 RGFGFVAFEDPDAAEQAVLELNG 254
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L+V NL+ S+D++ L EF FGT+ +V + S+GF + F+ P EA KA
Sbjct: 293 YQGVNLYVKNLDDSIDDERLRKEFAPFGTITSAKVMMEEG-RSKGFGFVCFSAPEEATKA 351
Query: 92 RVEMNGHLIGSKPVIITFVELK 113
EMNG +I +KP+ + + K
Sbjct: 352 VTEMNGRIIVTKPLYVALAQRK 373
>gi|351706751|gb|EHB09670.1| Polyadenylate-binding protein 4-like protein [Heterocephalus
glaber]
Length = 370
Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 83/270 (30%), Positives = 148/270 (54%), Gaps = 13/270 (4%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
V NL+ SVDN+ L F FG + +V + + S+G+A + F + + A A +MNG
Sbjct: 102 VKNLDRSVDNKTLYEHFSGFGKILSSKVMSD-DQGSKGYAFVHFQSQSAANCAIEQMNGK 160
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
+I +PV + KP ++ + + + V++KN + +D+E L+ F ++G +
Sbjct: 161 VINDRPVFVA--PFKP-RKDREAELRSRASEFTNVYIKNFGDDMDDERLQGVFSRYGKTL 217
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKK 213
VK++ D +GKSKGFGF+ F S++AA++A+ EMNG+ + FV A+ K
Sbjct: 218 SVKVMTDSSGKSKGFGFVSFESHEAAKRAVEEMNGKDMNGQLVFVGRAQKKVERQAELKH 277
Query: 214 VFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGFI 269
+F ++K ++ + K++V NL +++ + + F+ FG+IT ++ + + G I
Sbjct: 278 MFEQMKKERIRRCQGVKLYVKNLDDTVDDEQLRKEFSSFGSITRVKVMKEEGYSRGFGLI 337
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299
F P+ A A++ MNG V SK L + L+
Sbjct: 338 CFSSPEEAAKALTEMNGRVLGSKALSIALA 367
Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 73/261 (27%), Positives = 126/261 (48%), Gaps = 21/261 (8%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKK 90
Y+ L+V +L L +F G + +R+ R+ + G+A + F A+A++
Sbjct: 7 YRLASLYVGDLHAEATEDLLFRKFSAAGPVLSIRICRDLATRQPLGYAYVNFLQLADAQR 66
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I +P+ + + + R +G VFVKNL +VD + L H
Sbjct: 67 ALDTMNFDVIKGRPIRLMWSQRDACLRRSGIG---------NVFVKNLDRSVDNKTLYEH 117
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVP 210
F FG I+ K++ D+ G SKG+ F+ F S AA AI +MNG++I FV A P
Sbjct: 118 FSGFGKILSSKVMSDDQG-SKGYAFVHFQSQSAANCAIEQMNGKVINDRPVFV--APFKP 174
Query: 211 GKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KH 265
K +++ + + +++ N ++++ + +F+R+G S +++D K
Sbjct: 175 RKDREAELRS---RASEFTNVYIKNFGDDMDDERLQGVFSRYGKTLSVKVMTDSSGKSKG 231
Query: 266 IGFIEFIMPKHATHAVSTMNG 286
GF+ F + A AV MNG
Sbjct: 232 FGFVSFESHEAAKRAVEEMNG 252
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 103/179 (57%), Gaps = 10/179 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+++ N +D++ L F ++G V+V + + +S+GF + F + AK+A EMN
Sbjct: 192 VYIKNFGDDMDDERLQGVFSRYGKTLSVKVMTDSSGKSKGFGFVSFESHEAAKRAVEEMN 251
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKD--------KVFVKNLVETVDEEELK 148
G + + V + + K +R + +Q KK+ K++VKNL +TVD+E+L+
Sbjct: 252 GKDMNGQLVFVGRAQ-KKVERQAELKHMFEQMKKERIRRCQGVKLYVKNLDDTVDDEQLR 310
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
F FG+I VK++++E G S+GFG I F S + A KA+ EMNGR++ + ++LA+
Sbjct: 311 KEFSSFGSITRVKVMKEE-GYSRGFGLICFSSPEEAAKALTEMNGRVLGSKALSIALAQ 368
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
Query: 36 ELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEM 95
+L+V NL+ +VD++ L EF FG++ V+V + + SRGF +I F++P EA KA EM
Sbjct: 294 KLYVKNLDDTVDDEQLRKEFSSFGSITRVKVMKEEG-YSRGFGLICFSSPEEAAKALTEM 352
Query: 96 NGHLIGSKPVIITFVE 111
NG ++GSK + I +
Sbjct: 353 NGRVLGSKALSIALAQ 368
>gi|334312764|ref|XP_003339775.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
1-like [Monodelphis domestica]
Length = 614
Score = 140 bits (354), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 93/308 (30%), Positives = 163/308 (52%), Gaps = 23/308 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KG+ + W + D G R + N + + NL+ S+DN+AL + F FG +
Sbjct: 78 KGRPIRIMWSQ---RDPGLRKSGIGN-------IFIKNLDDSIDNKALYDTFSTFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V ++N SRGF + F T A +A MNG L+ + V + + + +R +G
Sbjct: 128 CKVVCDENG-SRGFGFVHFETHEAANQAINTMNGMLLNDRKVFVGHFKSRQ-EREAELGA 185
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
++ ++VKN +D+E L+ F +FG + VK++ DENG+S+GFGF+ F ++
Sbjct: 186 RALEFTN--IYVKNFEGDMDDECLQELFSQFGKTLSVKVMVDENGQSRGFGFVNFEKHEE 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNK-----IFVANLPS 238
A+KA+ MNG+ + +V A+ ++ K + ++ R N+ ++V NL
Sbjct: 244 AQKAVSNMNGKELGGRVLYVGRAQKRSERQSELKRRFEQMKQERVNRYQGVNLYVKNLDD 303
Query: 239 NINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
I++ + + F+ +G ITS+ ++++ K GF+ F P+ AT AV+ MNG + +KPL
Sbjct: 304 IIDDEKLRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPL 363
Query: 295 KVTLSGTK 302
V L+ K
Sbjct: 364 YVALAQRK 371
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 87/279 (31%), Positives = 135/279 (48%), Gaps = 37/279 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F G + +RV R+ S G+A I F PA+A++
Sbjct: 8 YPLASLYVGDLHPDVTEAMLYEKFSAAGPIMSIRVCRDVATRRSLGYAYINFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I +P+ I + + PG R +G +F+KNL +++D + L
Sbjct: 68 ALDTMNFEVIKGRPIRIMWSQRDPGLRKSGIG---------NIFIKNLDDSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG S+GFGF+ F +++AA +AI MNG ++ FV
Sbjct: 119 FSTFGNILSCKVVCDENG-SRGFGFVHFETHEAANQAINTMNGMLLNDRKVFVGHFKSRQ 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ F I+V N ++++ +ELF++FG S ++
Sbjct: 178 EREAELGARALEF-------------TNIYVKNFEGDMDDECLQELFSQFGKTLSVKVMV 224
Query: 263 DKH-----IGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
D++ GF+ F + A AVS MNG + L V
Sbjct: 225 DENGQSRGFGFVNFEKHEEAQKAVSNMNGKELGGRVLYV 263
Score = 41.2 bits (95), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGF--IEFIMPKHATHAVSTM 284
++V +L ++ + E F+ G I S + D + +G+ I F P A A+ TM
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSAAGPIMSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N V K +P+++ S PG+
Sbjct: 73 NFEVIKGRPIRIMWSQRDPGL 93
>gi|195487595|ref|XP_002091975.1| GE11925 [Drosophila yakuba]
gi|194178076|gb|EDW91687.1| GE11925 [Drosophila yakuba]
Length = 634
Score = 140 bits (354), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 93/276 (33%), Positives = 150/276 (54%), Gaps = 16/276 (5%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ ++DN+A+ + F FG + +VA ++ S+G+ + F T A + ++NG
Sbjct: 94 IKNLDKAIDNKAIYDTFSAFGNILSCKVATDEKGNSKGYGFVHFETEEAANTSIDKVNGM 153
Query: 99 LIGSKPVII-TFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNI 157
L+ K V + F+ K +R K +G + K + V+VKN E D+E+LK F +G I
Sbjct: 154 LLNGKKVYVGKFIPRK--EREKELGEKAKLFTN--VYVKNFTEDFDDEKLKEFFEPYGKI 209
Query: 158 IEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGR-MIQHNSTFVSLAEIVPGKKVFP 216
K++ E+GKSKGFGF+ F + +AAE A+ +NG+ M + S +V+ A+ ++
Sbjct: 210 TSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQQEL 269
Query: 217 KVKPPLLQPARKNKIF-----VANLPSNINNSEFEELFARFGTITSSSLVSD-----KHI 266
K K L+ R +F V NL I++ F+ +G ITS+ +++D K
Sbjct: 270 KRKFEELKQKRHESVFGVNLYVKNLDDTIDDDRLRVAFSPYGNITSAKVMTDEEGRSKGF 329
Query: 267 GFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ F P AT AV+ +NG V SKPL V L+ K
Sbjct: 330 GFVCFNAPSEATCAVTELNGRVVGSKPLYVALAQRK 365
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 78/258 (30%), Positives = 131/258 (50%), Gaps = 24/258 (9%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L V+ L ++F G + +RV R+ S G+A + F PA+A++A M
Sbjct: 4 LYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTM 63
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N L+ +KP+ I + + P R VG VF+KNL + +D + + F FG
Sbjct: 64 NFDLVRNKPIRIMWSQRDPSLRRSGVG---------NVFIKNLDKAIDNKAIYDTFSAFG 114
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ DE G SKG+GF+ F + +AA +I ++NG ++ N V + + +P K+
Sbjct: 115 NILSCKVATDEKGNSKGYGFVHFETEEAANTSIDKVNGMLL--NGKKVYVGKFIPRKERE 172
Query: 216 PKV--KPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS-----DKHIGF 268
++ K L ++V N + ++ + +E F +G ITS ++S K GF
Sbjct: 173 KELGEKAKLF-----TNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGF 227
Query: 269 IEFIMPKHATHAVSTMNG 286
+ F + A AV +NG
Sbjct: 228 VAFETTEAAEAAVQALNG 245
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 95/179 (53%), Gaps = 8/179 (4%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
++V N D++ L F+ +G + +V ++ +S+GF + F T A+ A +N
Sbjct: 185 VYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALN 244
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVG---PEEKQYKKDKVF-----VKNLVETVDEEELK 148
G +G + K +R + + E KQ + + VF VKNL +T+D++ L+
Sbjct: 245 GKDMGEGKSLYVARAQKKAERQQELKRKFEELKQKRHESVFGVNLYVKNLDDTIDDDRLR 304
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
F +GNI K++ DE G+SKGFGF+ F + A A+ E+NGR++ +V+LA+
Sbjct: 305 VAFSPYGNITSAKVMTDEEGRSKGFGFVCFNAPSEATCAVTELNGRVVGSKPLYVALAQ 363
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 45/77 (58%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L+V NL+ ++D+ L F +G + +V ++ S+GF + FN P+EA A E+N
Sbjct: 289 LYVKNLDDTIDDDRLRVAFSPYGNITSAKVMTDEEGRSKGFGFVCFNAPSEATCAVTELN 348
Query: 97 GHLIGSKPVIITFVELK 113
G ++GSKP+ + + K
Sbjct: 349 GRVVGSKPLYVALAQRK 365
Score = 42.4 bits (98), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 42/81 (51%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGF--IEFIMPKHATHAVSTM 284
++V +LP ++N S + F+ G + S + D + +G+ + F P A A+ TM
Sbjct: 4 LYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTM 63
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N + ++KP+++ S P +
Sbjct: 64 NFDLVRNKPIRIMWSQRDPSL 84
>gi|322698722|gb|EFY90490.1| poly(A) RNA binding protein [Metarhizium acridum CQMa 102]
Length = 742
Score = 140 bits (354), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 86/268 (32%), Positives = 136/268 (50%), Gaps = 24/268 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+PSV L F + G + +RV R+ S G+A + +N+ A+ +KA E+
Sbjct: 62 LYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTADGEKALEEL 121
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI +P I + + P R G VF+KNL +D + L F FG
Sbjct: 122 NYTLIKGRPCRIMWSQRDPALRKTGQG---------NVFIKNLDVAIDNKALHDTFAAFG 172
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ +DENG SKG+GF+ + + +AA +AI +NG ++ +V G +
Sbjct: 173 NILSCKVAQDENGNSKGYGFVHYETDEAAHQAIKHVNGMLLNEKKVYV-------GHHIP 225
Query: 216 PKVKPPLLQPARKN--KIFVANLPSNINNSEFEELFARFGTITSSSLVSDKH-----IGF 268
K + + + N I+V N+ + ++ EF ELF ++G ITSSSL D+ GF
Sbjct: 226 KKDRQSKFEEMKANFTNIYVKNISTEASDDEFRELFEKYGDITSSSLARDQEGKSRGFGF 285
Query: 269 IEFIMPKHATHAVSTMNGHVFKSKPLKV 296
+ F + A AV ++G F+ + L V
Sbjct: 286 VNFTTHESAAKAVEELHGKDFRGQDLYV 313
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 82/323 (25%), Positives = 152/323 (47%), Gaps = 57/323 (17%)
Query: 34 ENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARV 93
+ + + NL+ ++DN+AL + F FG + +VA+++N S+G+ + + T A +A
Sbjct: 147 QGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYETDEAAHQAIK 206
Query: 94 EMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIK 153
+NG L+ K V + K ++SK EE + ++VKN+ ++E + F K
Sbjct: 207 HVNGMLLNEKKVYVGHHIPKKDRQSKF---EEMKANFTNIYVKNISTEASDDEFRELFEK 263
Query: 154 FGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGK- 212
+G+I + RD+ GKS+GFGF+ F ++++A KA+ E++G+ + +V A+ +
Sbjct: 264 YGDITSSSLARDQEGKSRGFGFVNFTTHESAAKAVEELHGKDFRGQDLYVGRAQKKHERE 323
Query: 213 -KVFPKVKPPLLQPARKNK---IFVANLPSNINNSEFEELFARFGTITSSSLVSD----- 263
++ + L+ A K + +++ NL ++++ + ++FA FG ITS+ ++ D
Sbjct: 324 EELRKSYEAARLEKANKYQGVNLYIKNLDDDVDDEKLRQMFAEFGPITSAKVMRDAPSDG 383
Query: 264 --------------------------------------------KHIGFIEFIMPKHATH 279
K GF+ F P AT
Sbjct: 384 SDDDKEKEEDNEKEPEAKEEAKETEEEDADKKADKKGDKKLGKSKGFGFVCFSNPDDATK 443
Query: 280 AVSTMNGHVFKSKPLKVTLSGTK 302
AV+ MN + KPL V L+ K
Sbjct: 444 AVAEMNQRMINGKPLYVALAQRK 466
>gi|118100597|ref|XP_417367.2| PREDICTED: embryonic polyadenylate-binding protein-like [Gallus
gallus]
Length = 632
Score = 140 bits (354), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 92/308 (29%), Positives = 159/308 (51%), Gaps = 23/308 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KG+ + W + D G R + N + + NL+ S+DN+AL + F FG +
Sbjct: 78 KGRPVRIMWSQ---RDPGLRKSGVGN-------VFIKNLDDSIDNKALYDTFSAFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V ++N SRG + F T A +A MNG L+ + V + + + +R G
Sbjct: 128 CKVVCDENG-SRGHGFVHFETQEAATRAIQTMNGMLLNDRKVFVGHFKSR-KEREAEFGA 185
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
++ V++KN + +D+ L+ F +FG + VK++ D G+SKGFGF+ F ++
Sbjct: 186 RAMEFTN--VYIKNFGDDMDDNRLREIFSRFGKTLSVKVMMDHTGRSKGFGFVNFEKHEE 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A+KA+ +MNG+ I +V A+ K+ F ++K + + ++V NL
Sbjct: 244 AQKAVADMNGKEINGRMVYVGRAQKRLERQSELKRKFEQMKQERVSRYQGVNLYVKNLDD 303
Query: 239 NINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
I++ + F+ +GTITS+ ++++ K GF+ F P+ AT AV+ MNG + +KPL
Sbjct: 304 GIDDERLRKEFSPYGTITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPL 363
Query: 295 KVTLSGTK 302
V L+ K
Sbjct: 364 YVALAQRK 371
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 85/269 (31%), Positives = 129/269 (47%), Gaps = 37/269 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F G + +RV R+ + S G+A I F PA+A++
Sbjct: 8 YPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVASRRSLGYAYINFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I +PV I + + PG R VG VF+KNL +++D + L
Sbjct: 68 ALDTMNFEVIKGRPVRIMWSQRDPGLRKSGVG---------NVFIKNLDDSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG S+G GF+ F + +AA +AI MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SRGHGFVHFETQEAATRAIQTMNGMLLNDRKVFVGHFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE F +++ N +++++ E+F+RFG S ++
Sbjct: 178 EREAEFGARAMEF-------------TNVYIKNFGDDMDDNRLREIFSRFGKTLSVKVMM 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNG 286
D K GF+ F + A AV+ MNG
Sbjct: 225 DHTGRSKGFGFVNFEKHEEAQKAVADMNG 253
>gi|334349575|ref|XP_003342221.1| PREDICTED: polyadenylate-binding protein 1-like [Monodelphis
domestica]
Length = 707
Score = 140 bits (354), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 95/308 (30%), Positives = 163/308 (52%), Gaps = 23/308 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK + W + D R + N + + NL+ S+DN+AL + F FG +
Sbjct: 147 KGKPVRIMWSQ---RDPSLRKSGVGN-------IFIKNLDKSIDNKALFDTFSAFGNILS 196
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V +++ S+G+ + F T A++A +MNG L+ + V + + + +R +G
Sbjct: 197 CKVVCDEHG-SKGYGFVHFETRDAAERAIDKMNGMLLNDRKVFVGRFKSR-KEREAELGA 254
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
K++ V++KN E +D+ LK F KFG + VK++ DE+G SKGFGF+ F ++
Sbjct: 255 RAKEF--TNVYIKNFGEDMDDLRLKRLFGKFGPALSVKVMTDESGTSKGFGFVNFERHED 312
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A+KA+ EMNG+ + +V A+ K+ F ++K + + ++V NL
Sbjct: 313 AQKAVEEMNGKELNGKKIYVGRAQKKGERQTELKRKFEQLKQDRITRYQGVNLYVKNLDD 372
Query: 239 NINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
I++ + F+ FGTITS+ ++ + K GF+ F P+ AT AV+ MNG + +KPL
Sbjct: 373 GIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 432
Query: 295 KVTLSGTK 302
+ L+ K
Sbjct: 433 YIALAQRK 440
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 70/225 (31%), Positives = 108/225 (48%), Gaps = 36/225 (16%)
Query: 85 PAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDE 144
PA+A++A MN +I KPV I + + P R VG +F+KNL +++D
Sbjct: 131 PADAERALETMNFDVIKGKPVRIMWSQRDPSLRKSGVG---------NIFIKNLDKSIDN 181
Query: 145 EELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVS 204
+ L F FGNI+ K+V DE+G SKG+GF+ F + AAE+AI +MNG ++ FV
Sbjct: 182 KALFDTFSAFGNILSCKVVCDEHG-SKGYGFVHFETRDAAERAIDKMNGMLLNDRKVFVG 240
Query: 205 L--------AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTIT 256
AE+ K F +++ N ++++ + LF +FG
Sbjct: 241 RFKSRKEREAELGARAKEF-------------TNVYIKNFGEDMDDLRLKRLFGKFGPAL 287
Query: 257 SSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
S +++D K GF+ F + A AV MNG K + V
Sbjct: 288 SVKVMTDESGTSKGFGFVNFERHEDAQKAVEEMNGKELNGKKIYV 332
>gi|400234898|gb|AFP74112.1| poly-A binding protein, partial [Nicotiana benthamiana]
Length = 643
Score = 140 bits (353), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 89/285 (31%), Positives = 156/285 (54%), Gaps = 33/285 (11%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ ++D++AL + F FG + +VA + + +S+G+ + +++ A+KA ++N
Sbjct: 117 IFIKNLDKAIDHKALHDTFSAFGNILSCKVAVDSSGQSKGYGFVQYDSDEAAQKAIEKLN 176
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGP----EEKQYKKDK-----VFVKNLVETVDEEEL 147
G L+ K V VGP +E+ DK VFVKNL E+ EEEL
Sbjct: 177 GMLLNDKQVY--------------VGPFVRKQERDMAVDKTRFTNVFVKNLSESTLEEEL 222
Query: 148 KSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
+ F +FG I V +++DE+GKS+ FGF+ F + + A +A+ +NG + + FV A+
Sbjct: 223 RKIFGEFGTITSVAVMKDEDGKSRCFGFVNFENAEDAARAVEALNGYKLDNKDWFVGRAQ 282
Query: 208 IVPGKKV-----FPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
+++ F + + ++ +++ NL +I++ + +ELF+ +GTITS ++
Sbjct: 283 KKSEREMELKHRFEQSAQEAVDKSQGLNLYLKNLDDSISDDKLKELFSPYGTITSCKVMR 342
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
D K GF+ F P+ A+ A+S MNG + SKPL V L+ K
Sbjct: 343 DPSGVSKGSGFVAFSTPEEASRALSEMNGKMVVSKPLYVALAQRK 387
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 77/262 (29%), Positives = 131/262 (50%), Gaps = 22/262 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L+ +V + L + F + G + VRV R+ + S G+ + + P +A +A +
Sbjct: 29 LYVGDLDVNVTDSQLYDLFNQLGQVVSVRVCRDLTSQRSLGYGYVNYGNPQDAARALEVL 88
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N + KP+ I + P R G +F+KNL + +D + L F FG
Sbjct: 89 NFTPLHGKPIRIMYSNRDPTIRRSGNG---------NIFIKNLDKAIDHKALHDTFSAFG 139
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ D +G+SKG+GF+Q+ S +AA+KAI ++NG ++ +V G V
Sbjct: 140 NILSCKVAVDSSGQSKGYGFVQYDSDEAAQKAIEKLNGMLLNDKQVYV-------GPFVR 192
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIE 270
+ + + R +FV NL + E ++F FGTITS +++ D + GF+
Sbjct: 193 KQERDMAVDKTRFTNVFVKNLSESTLEEELRKIFGEFGTITSVAVMKDEDGKSRCFGFVN 252
Query: 271 FIMPKHATHAVSTMNGHVFKSK 292
F + A AV +NG+ +K
Sbjct: 253 FENAEDAARAVEALNGYKLDNK 274
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 49/83 (59%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L++ NL+ S+ + L F +GT+ +V R+ + S+G + F+TP EA +A EMN
Sbjct: 311 LYLKNLDDSISDDKLKELFSPYGTITSCKVMRDPSGVSKGSGFVAFSTPEEASRALSEMN 370
Query: 97 GHLIGSKPVIITFVELKPGQRSK 119
G ++ SKP+ + + K +R++
Sbjct: 371 GKMVVSKPLYVALAQRKEERRAR 393
>gi|431894424|gb|ELK04224.1| Polyadenylate-binding protein 1-like protein [Pteropus alecto]
Length = 512
Score = 140 bits (353), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 95/315 (30%), Positives = 167/315 (53%), Gaps = 30/315 (9%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KG+ + W + D G R + N + + NLE S+DN+AL + F FG +
Sbjct: 78 KGQPIRIMWSQ---RDPGLRKSGVGN-------IFIKNLEDSIDNKALYDTFSTFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V + + SRGF + F T A+ A MNG L+ + V + + + +R +G
Sbjct: 128 CKVVCDDHG-SRGFGFVHFETHEAAQLAISTMNGMLLNDRKVFVGHFKSRQ-EREAELGA 185
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKF-----GNIIEVKIVRDENGKSKGFGFIQF 178
++ ++VKNL +DE L+ F +F G ++ VK++RD++G S+GFGF+ F
Sbjct: 186 RAMEFTN--IYVKNLQVDMDEWGLQELFSQFDWSSPGKMLSVKVMRDDSGHSRGFGFVNF 243
Query: 179 FSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNK-------I 231
++ A+KA+++MNG+ ++ +V A+ ++ K K ++ R N+ +
Sbjct: 244 EKHEEAQKAVMDMNGKEVRGRLLYVGRAQKRMERQNELKRKFEQMKQDRLNRYHVRGVNL 303
Query: 232 FVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGH 287
+V NL +IN+ + + F+ +G ITS+ ++++ K GF+ F P+ AT AV+ MNG
Sbjct: 304 YVKNLDDSINDEKLRKEFSPYGMITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGR 363
Query: 288 VFKSKPLKVTLSGTK 302
+ +KPL V L+ K
Sbjct: 364 IVGTKPLYVALAQRK 378
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 85/279 (30%), Positives = 134/279 (48%), Gaps = 42/279 (15%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L P V L +F G + +RV R+ S G+A I F PA+A++A M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N +I +P+ I + + PG R VG +F+KNL +++D + L F FG
Sbjct: 73 NFEVIKGQPIRIMWSQRDPGLRKSGVG---------NIFIKNLEDSIDNKALYDTFSTFG 123
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL--------AE 207
NI+ K+V D++G S+GFGF+ F +++AA+ AI MNG ++ FV AE
Sbjct: 124 NILSCKVVCDDHG-SRGFGFVHFETHEAAQLAISTMNGMLLNDRKVFVGHFKSRQEREAE 182
Query: 208 IVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARF-----GTITSSSLVS 262
+ F I+V NL +++ +ELF++F G + S ++
Sbjct: 183 LGARAMEF-------------TNIYVKNLQVDMDEWGLQELFSQFDWSSPGKMLSVKVMR 229
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
D + GF+ F + A AV MNG + + L V
Sbjct: 230 DDSGHSRGFGFVNFEKHEEAQKAVMDMNGKEVRGRLLYV 268
>gi|440893983|gb|ELR46563.1| Polyadenylate-binding protein 4-like protein [Bos grunniens mutus]
Length = 370
Score = 140 bits (353), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 84/270 (31%), Positives = 145/270 (53%), Gaps = 13/270 (4%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+DN+ L F FG + +V + + SRG+A + F A +A EMNG
Sbjct: 102 IKNLDRSIDNKTLYEHFSAFGKILSSKVMSDDHG-SRGYAFVHFQNQIAADRAIEEMNGA 160
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ + FV ++ + + K ++ V++KN + +D+E L F K+G +
Sbjct: 161 LLKDCRL---FVGRFKSRKDREAEFQNKAHEFTNVYIKNFGDEMDDERLNEVFSKYGKTL 217
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKK 213
VK++ D +GKSKGFGF+ F S++AA++A+ EMNG+ I FV A+ K+
Sbjct: 218 SVKVMTDSSGKSKGFGFVSFDSHEAAKRAVEEMNGKDINGQLLFVGRAQKKAERQAELKQ 277
Query: 214 VFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGFI 269
+F ++K + + K+++ NL I++ + F+ FG+I+ ++ + K G I
Sbjct: 278 MFEQLKHERFRRCQGAKLYIKNLDETIDDEKLRREFSSFGSISRVKVMQEEGRSKGFGLI 337
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299
F + AT A++ MNG + SKPL + L+
Sbjct: 338 CFSSAEEATKAMTEMNGRILGSKPLNIALA 367
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 73/263 (27%), Positives = 126/263 (47%), Gaps = 25/263 (9%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y++ L+V +L V L +F G + +R+ R+ S G+A + F A+A+K
Sbjct: 7 YRQASLYVGDLHADVTEDLLFKKFSAVGPVLSIRICRDLVTRRSLGYAYVNFLQLADAQK 66
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN LI K + + + + R +G VF+KNL ++D + L H
Sbjct: 67 ALDTMNFDLIKGKSIRLMWSQRDAYLRKSGIG---------NVFIKNLDRSIDNKTLYEH 117
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVP 210
F FG I+ K++ D++G S+G+ F+ F + AA++AI EMNG +++ FV
Sbjct: 118 FSAFGKILSSKVMSDDHG-SRGYAFVHFQNQIAADRAIEEMNGALLKDCRLFV------- 169
Query: 211 GKKVFPKVKPPLLQ--PARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----- 263
G+ K + Q +++ N +++ E+F+++G S +++D
Sbjct: 170 GRFKSRKDREAEFQNKAHEFTNVYIKNFGDEMDDERLNEVFSKYGKTLSVKVMTDSSGKS 229
Query: 264 KHIGFIEFIMPKHATHAVSTMNG 286
K GF+ F + A AV MNG
Sbjct: 230 KGFGFVSFDSHEAAKRAVEEMNG 252
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 112/197 (56%), Gaps = 13/197 (6%)
Query: 22 ARSNKE---NNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFA 78
+R ++E NK ++ +++ N +D++ L F K+G V+V + + +S+GF
Sbjct: 174 SRKDREAEFQNKAHEFTNVYIKNFGDEMDDERLNEVFSKYGKTLSVKVMTDSSGKSKGFG 233
Query: 79 IIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKD------- 131
+ F++ AK+A EMNG I + + + + K +R + +Q K +
Sbjct: 234 FVSFDSHEAAKRAVEEMNGKDINGQLLFVGRAQ-KKAERQAELKQMFEQLKHERFRRCQG 292
Query: 132 -KVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIE 190
K+++KNL ET+D+E+L+ F FG+I VK++++E G+SKGFG I F S + A KA+ E
Sbjct: 293 AKLYIKNLDETIDDEKLRREFSSFGSISRVKVMQEE-GRSKGFGLICFSSAEEATKAMTE 351
Query: 191 MNGRMIQHNSTFVSLAE 207
MNGR++ ++LA+
Sbjct: 352 MNGRILGSKPLNIALAQ 368
>gi|322711066|gb|EFZ02640.1| poly(A) RNA binding protein [Metarhizium anisopliae ARSEF 23]
Length = 743
Score = 140 bits (353), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 85/268 (31%), Positives = 136/268 (50%), Gaps = 24/268 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+PSV L F + G + +RV R+ S G+A + +N+ A+ +KA E+
Sbjct: 63 LYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTADGEKALEEL 122
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI +P I + + P R G VF+KNL +D + L F FG
Sbjct: 123 NYTLIKGRPCRIMWSQRDPALRKTGQG---------NVFIKNLDVAIDNKALHDTFAAFG 173
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ +DENG SKG+GF+ + + +AA +AI +NG ++ +V G +
Sbjct: 174 NILSCKVAQDENGNSKGYGFVHYETDEAAHQAIKHVNGMLLNEKKVYV-------GHHIP 226
Query: 216 PKVKPPLLQPARKN--KIFVANLPSNINNSEFEELFARFGTITSSSLVSDKH-----IGF 268
K + + + N I++ N+ + ++ EF ELF ++G ITSSSL D+ GF
Sbjct: 227 KKDRQSKFEEMKANFTNIYIKNISTEASDDEFRELFEKYGDITSSSLARDQEGKSRGFGF 286
Query: 269 IEFIMPKHATHAVSTMNGHVFKSKPLKV 296
+ F + A AV ++G F+ + L V
Sbjct: 287 VNFTTHESAAKAVEELHGKDFRGQDLYV 314
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 87/353 (24%), Positives = 160/353 (45%), Gaps = 67/353 (18%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KG+ W + D R + N + + NL+ ++DN+AL + F FG +
Sbjct: 128 KGRPCRIMWSQ---RDPALRKTGQGN-------VFIKNLDVAIDNKALHDTFAAFGNILS 177
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+VA+++N S+G+ + + T A +A +NG L+ K V + K ++SK
Sbjct: 178 CKVAQDENGNSKGYGFVHYETDEAAHQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKF--- 234
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
EE + +++KN+ ++E + F K+G+I + RD+ GKS+GFGF+ F ++++
Sbjct: 235 EEMKANFTNIYIKNISTEASDDEFRELFEKYGDITSSSLARDQEGKSRGFGFVNFTTHES 294
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAEIVPGK--KVFPKVKPPLLQPARKNK---IFVANLPS 238
A KA+ E++G+ + +V A+ + ++ + L+ A K + +++ NL
Sbjct: 295 AAKAVEELHGKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLDD 354
Query: 239 NINNSEFEELFARFGTITSSSLVSD----------------------------------- 263
++++ + ++FA FG ITS+ ++ D
Sbjct: 355 DVDDEKLRQMFAEFGPITSAKVMRDAPSDGSDDDKEKEEDNEKEPEAKEEAKETEEEDAD 414
Query: 264 --------------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
K GF+ F P AT AV+ MN + KPL V L+ K
Sbjct: 415 KKADKKGDKKLGKSKGFGFVCFSNPDDATKAVAEMNQRMINGKPLYVALAQRK 467
>gi|326931817|ref|XP_003212020.1| PREDICTED: embryonic polyadenylate-binding protein-like [Meleagris
gallopavo]
Length = 633
Score = 140 bits (353), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 92/308 (29%), Positives = 159/308 (51%), Gaps = 23/308 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KG+ + W + D G R + N + + NL+ S+DN+AL + F FG +
Sbjct: 78 KGRPVRIMWSQ---RDPGLRKSGVGN-------VFIKNLDDSIDNKALYDTFSAFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V ++N SRG + F T A +A MNG L+ + V + + + +R G
Sbjct: 128 CKVVCDENG-SRGHGFVHFETQEAATRAIETMNGMLLNDRKVFVGHFKSR-KEREAEFGA 185
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
++ V++KN + +D+ L+ F +FG + VK++ D G+SKGFGF+ F ++
Sbjct: 186 RAMEFTN--VYIKNFGDDMDDNRLREIFSRFGKTLSVKVMMDNTGRSKGFGFVNFEKHEE 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A+KA+ +MNG+ I +V A+ K+ F ++K + + ++V NL
Sbjct: 244 AQKAVADMNGKEINGRMVYVGRAQKRLERQSELKRKFEQMKQERVSRYQGVNLYVKNLDD 303
Query: 239 NINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
I++ + F+ +GTITS+ ++++ K GF+ F P+ AT AV+ MNG + +KPL
Sbjct: 304 GIDDERLRKEFSPYGTITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPL 363
Query: 295 KVTLSGTK 302
V L+ K
Sbjct: 364 YVALAQRK 371
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 85/269 (31%), Positives = 129/269 (47%), Gaps = 37/269 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F G + +RV R+ + S G+A I F PA+A++
Sbjct: 8 YPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVASRRSLGYAYINFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I +PV I + + PG R VG VF+KNL +++D + L
Sbjct: 68 ALDTMNFEVIKGRPVRIMWSQRDPGLRKSGVG---------NVFIKNLDDSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG S+G GF+ F + +AA +AI MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SRGHGFVHFETQEAATRAIETMNGMLLNDRKVFVGHFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE F +++ N +++++ E+F+RFG S ++
Sbjct: 178 EREAEFGARAMEF-------------TNVYIKNFGDDMDDNRLREIFSRFGKTLSVKVMM 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNG 286
D K GF+ F + A AV+ MNG
Sbjct: 225 DNTGRSKGFGFVNFEKHEEAQKAVADMNG 253
>gi|310798668|gb|EFQ33561.1| 4 family polyadenylate binding protein [Glomerella graminicola
M1.001]
Length = 768
Score = 140 bits (353), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 85/268 (31%), Positives = 136/268 (50%), Gaps = 24/268 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+PSV L F + G++ +RV R+ S G+A + +NT ++ +KA E+
Sbjct: 66 LYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTSDGEKALEEL 125
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI +P I + + P R G VF+KNL +D + L F FG
Sbjct: 126 NYTLIKGRPCRIMWSQRDPALRKTGQG---------NVFIKNLDVAIDNKALHDTFAAFG 176
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ +DE+G SKG+GF+ + + +AA +AI +NG ++ +V G +
Sbjct: 177 NILSCKVAQDEHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYV-------GHHIP 229
Query: 216 PKVKPPLLQPARKN--KIFVANLPSNINNSEFEELFARFGTITSSSLVSDKH-----IGF 268
K + + + N I+V N+ + + + EF +LF FG +TSSSL D+ GF
Sbjct: 230 KKDRQSKFEEMKANFTNIYVKNIANEVTDDEFRDLFTAFGDVTSSSLARDQEGKSRGFGF 289
Query: 269 IEFIMPKHATHAVSTMNGHVFKSKPLKV 296
+ F + A AV +NG F+ + L V
Sbjct: 290 VNFTTHEAAAKAVDDLNGKDFRGQDLYV 317
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/235 (27%), Positives = 130/235 (55%), Gaps = 8/235 (3%)
Query: 34 ENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARV 93
+ + + NL+ ++DN+AL + F FG + +VA++++ S+G+ + + T A +A
Sbjct: 151 QGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDEHGNSKGYGFVHYETDEAASQAIK 210
Query: 94 EMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIK 153
+NG L+ K V + K ++SK EE + ++VKN+ V ++E + F
Sbjct: 211 HVNGMLLNEKKVYVGHHIPKKDRQSKF---EEMKANFTNIYVKNIANEVTDDEFRDLFTA 267
Query: 154 FGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGK- 212
FG++ + RD+ GKS+GFGF+ F +++AA KA+ ++NG+ + +V A+ +
Sbjct: 268 FGDVTSSSLARDQEGKSRGFGFVNFTTHEAAAKAVDDLNGKDFRGQDLYVGRAQKKHERE 327
Query: 213 -KVFPKVKPPLLQPARKNK---IFVANLPSNINNSEFEELFARFGTITSSSLVSD 263
++ + ++ A K + +++ NL +++ + +LFA FG ITS+ ++ D
Sbjct: 328 EELRKSYEAARMEKASKYQGVNLYIKNLDDEVDDEKLRQLFADFGPITSAKVMRD 382
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/229 (25%), Positives = 96/229 (41%), Gaps = 58/229 (25%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
++V N+ V + + F FG + +AR++ +SRGF + F T A KA ++N
Sbjct: 247 IYVKNIANEVTDDEFRDLFTAFGDVTSSSLARDQEGKSRGFGFVNFTTHEAAAKAVDDLN 306
Query: 97 GHLIGSKPVIITFVELKPGQ-----RSKPVGPEEK--QYKKDKVFVKNLVETVDEEELKS 149
G + + + + K + +S EK +Y+ +++KNL + VD+E+L+
Sbjct: 307 GKDFRGQDLYVGRAQKKHEREEELRKSYEAARMEKASKYQGVNLYIKNLDDEVDDEKLRQ 366
Query: 150 HFIKFGNIIEVKIVRDE------------------------------------------- 166
F FG I K++RD
Sbjct: 367 LFADFGPITSAKVMRDNATESGNEDEGSSDDKENEPKKEEGEEKAEEAKSEDKEDADKKA 426
Query: 167 --------NGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
+GKSKGFGF+ F + A KA+ EMN RM+ +V+LA+
Sbjct: 427 DKKSDKKPHGKSKGFGFVCFSNPDDATKAVAEMNQRMVNGKPLYVALAQ 475
Score = 37.7 bits (86), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 27/46 (58%)
Query: 74 SRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSK 119
S+GF + F+ P +A KA EMN ++ KP+ + + K ++S+
Sbjct: 438 SKGFGFVCFSNPDDATKAVAEMNQRMVNGKPLYVALAQRKDVRKSQ 483
>gi|432865704|ref|XP_004070572.1| PREDICTED: embryonic polyadenylate-binding protein-like [Oryzias
latipes]
Length = 624
Score = 140 bits (353), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 90/305 (29%), Positives = 161/305 (52%), Gaps = 23/305 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KG+ + W + D R + N + + N++ S+DN+AL + F FG +
Sbjct: 78 KGRPIRIMWSQ---RDPALRKSGVGN-------IFIKNIDDSIDNKALYDTFSAFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V ++ S+G+ + F T A +A MNG L+ + V FV ++ + V
Sbjct: 128 CKVVCDERG-SKGYGFVHFETQEAANRAIETMNGMLLNDRKV---FVGHFKSRKEREVEF 183
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
K K +++KN + + +E+LK F FG + V+++RDE G+S+GFGF+ + ++
Sbjct: 184 GTKVMKFTNIYIKNFGDNLTDEKLKEAFSAFGKTLSVRVMRDEKGRSRGFGFVNYAHHED 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A+KA+ EMNG+ + +V A+ K+ F ++K +Q + ++V NL
Sbjct: 244 AQKAVDEMNGKEMNGKIIYVGRAQKRLERQGELKRKFDQLKQDRIQRYQGVNLYVKNLDD 303
Query: 239 NINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
+I++ + F+ +GTITS+ ++++ K GF+ F P+ AT AV+ MNG + +KPL
Sbjct: 304 SIDDERLRKEFSPYGTITSAKVMTEAGQSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Query: 295 KVTLS 299
V L+
Sbjct: 364 YVALA 368
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 81/267 (30%), Positives = 126/267 (47%), Gaps = 33/267 (12%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F G + +RV R+ S G+A I F PA+A+
Sbjct: 8 YPLASLYVGDLHPDVTEAMLYQKFSPAGPIVSIRVCRDIITRRSLGYAYINFQQPADAEC 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I +P+ I + + P R VG +F+KN+ +++D + L
Sbjct: 68 ALDTMNYDVIKGRPIRIMWSQRDPALRKSGVG---------NIFIKNIDDSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DE G SKG+GF+ F + +AA +AI MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDERG-SKGYGFVHFETQEAANRAIETMNGMLLNDRKVFVGHFKSRK 177
Query: 206 -AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD- 263
E+ G KV + I++ N N+ + + +E F+ FG S ++ D
Sbjct: 178 EREVEFGTKVM-----------KFTNIYIKNFGDNLTDEKLKEAFSAFGKTLSVRVMRDE 226
Query: 264 ----KHIGFIEFIMPKHATHAVSTMNG 286
+ GF+ + + A AV MNG
Sbjct: 227 KGRSRGFGFVNYAHHEDAQKAVDEMNG 253
Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 102/187 (54%), Gaps = 10/187 (5%)
Query: 29 NKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEA 88
KV K +++ N ++ ++ L F FG VRV R++ SRGF + + +A
Sbjct: 185 TKVMKFTNIYIKNFGDNLTDEKLKEAFSAFGKTLSVRVMRDEKGRSRGFGFVNYAHHEDA 244
Query: 89 KKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKV--------FVKNLVE 140
+KA EMNG + K + + + K +R + + Q K+D++ +VKNL +
Sbjct: 245 QKAVDEMNGKEMNGKIIYVGRAQ-KRLERQGELKRKFDQLKQDRIQRYQGVNLYVKNLDD 303
Query: 141 TVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNS 200
++D+E L+ F +G I K++ E G+SKGFGF+ F S + A KA+ EMNGR++
Sbjct: 304 SIDDERLRKEFSPYGTITSAKVM-TEAGQSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 362
Query: 201 TFVSLAE 207
+V+LA+
Sbjct: 363 LYVALAQ 369
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L+V NL+ S+D++ L EF +GT+ +V + +S+GF + F++P EA KA
Sbjct: 291 YQGVNLYVKNLDDSIDDERLRKEFSPYGTITSAKVM-TEAGQSKGFGFVCFSSPEEATKA 349
Query: 92 RVEMNGHLIGSKPVIITFVELK 113
EMNG ++ +KP+ + + +
Sbjct: 350 VTEMNGRIVATKPLYVALAQRR 371
>gi|156554126|ref|XP_001604025.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Nasonia
vitripennis]
Length = 627
Score = 140 bits (353), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 96/299 (32%), Positives = 160/299 (53%), Gaps = 21/299 (7%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ ++DN+A+ + F FG + RVA++++ S+G+ + F T A K+ +NG
Sbjct: 103 IKNLDKNIDNKAMYDTFSAFGNILSCRVAQDESGSSKGYGFVHFETEEAANKSIDRVNGM 162
Query: 99 LIGSKPVII-TFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNI 157
L+ K V + F+ K +R K +G + K + V+VKN E + +++LK F K+G I
Sbjct: 163 LLNGKKVYVGKFISRK--EREKELGEKAKLFTN--VYVKNFGEDMTDDKLKEMFEKYGTI 218
Query: 158 IEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNS-TFVSLAEIVPGKKVFP 216
K++ ++GKS+GFGF+ F AA++A+ ++NG+ I +V A+ ++
Sbjct: 219 TSHKVMSKDDGKSRGFGFVAFEDPNAADRAVADLNGKEIAEGKIMYVGRAQKKAERQQEL 278
Query: 217 KVKPPLLQPARKNK-----IFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIG 267
K K L+ R N+ ++V NL I++ + FA FGTITS ++ + K G
Sbjct: 279 KRKFEQLKIERLNRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSVKVMMEDGRSKGFG 338
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKPGVSITNPTKAPKKPAYIDEVKNV 326
F+ F + + AT AV+ MNG + SKPL V L+ K KA Y+ V N+
Sbjct: 339 FVCFSLAEEATKAVTEMNGRIVGSKPLYVALAQRK------EDRKAHLASQYLQRVANI 391
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 78/263 (29%), Positives = 132/263 (50%), Gaps = 24/263 (9%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L + L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDAVTRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I +P+ I + + P R VG VF+KNL + +D + +
Sbjct: 68 ALDTMNFDIIKGRPIRIMWSQRDPSLRRSGVG---------NVFIKNLDKNIDNKAMYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVP 210
F FGNI+ ++ +DE+G SKG+GF+ F + +AA K+I +NG ++ +V
Sbjct: 119 FSAFGNILSCRVAQDESGSSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYV------- 171
Query: 211 GKKVFPKVKPPLLQPARK--NKIFVANLPSNINNSEFEELFARFGTITSSSLVS-----D 263
GK + K + L K ++V N ++ + + +E+F ++GTITS ++S
Sbjct: 172 GKFISRKEREKELGEKAKLFTNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMSKDDGKS 231
Query: 264 KHIGFIEFIMPKHATHAVSTMNG 286
+ GF+ F P A AV+ +NG
Sbjct: 232 RGFGFVAFEDPNAADRAVADLNG 254
>gi|7673355|gb|AAF66823.1|AF190655_1 poly(A)-binding protein [Nicotiana tabacum]
Length = 649
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 87/285 (30%), Positives = 157/285 (55%), Gaps = 33/285 (11%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ ++D++AL + F FG + +VA + + +S+G+ + +++ A+KA ++N
Sbjct: 117 IFIKNLDKAIDHKALHDTFSAFGNILSCKVAVDSSGQSKGYGFVQYDSEEAAQKAIEKLN 176
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKD---------KVFVKNLVETVDEEEL 147
G L+ K V VGP +++++D VFVKNL E+ EEEL
Sbjct: 177 GMLLNDKQVY--------------VGPFVRKHERDMAVDKTRFTNVFVKNLSESTLEEEL 222
Query: 148 KSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
+ F +FG I V +++DE+GKS+ FGF+ F + + A +A+ +NG + + FV A+
Sbjct: 223 RKIFGEFGAITSVAVMKDEDGKSRCFGFVNFENAEDAARAVEALNGYKLDNKDWFVGRAQ 282
Query: 208 IVPGKKV-----FPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
+++ F + + ++ +++ NL +I++ + +ELF+ +GTITS ++
Sbjct: 283 KKSEREMELKHRFEQSAKEAVDKSQGLNLYIKNLDDSISDEKLKELFSPYGTITSCKVMR 342
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
D K GF+ F P+ A+ A+S MNG + SKPL V L+ K
Sbjct: 343 DPSGVSKGSGFVAFSNPEEASRALSEMNGKMVVSKPLYVALAQRK 387
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 76/262 (29%), Positives = 129/262 (49%), Gaps = 22/262 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L+ +V + L + F + G + VRV R+ + S G+ + + P +A +A +
Sbjct: 29 LYVGDLDVNVTDSQLYDLFNQLGQVVSVRVCRDLTSQRSLGYGYVNYGNPQDAARALEVL 88
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N + KP+ I + P R G +F+KNL + +D + L F FG
Sbjct: 89 NFTPLHGKPIRIMYSNRDPTIRRSGNG---------NIFIKNLDKAIDHKALHDTFSAFG 139
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ D +G+SKG+GF+Q+ S +AA+KAI ++NG ++ +V G V
Sbjct: 140 NILSCKVAVDSSGQSKGYGFVQYDSEEAAQKAIEKLNGMLLNDKQVYV-------GPFVR 192
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIE 270
+ + R +FV NL + E ++F FG ITS +++ D + GF+
Sbjct: 193 KHERDMAVDKTRFTNVFVKNLSESTLEEELRKIFGEFGAITSVAVMKDEDGKSRCFGFVN 252
Query: 271 FIMPKHATHAVSTMNGHVFKSK 292
F + A AV +NG+ +K
Sbjct: 253 FENAEDAARAVEALNGYKLDNK 274
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 49/83 (59%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L++ NL+ S+ ++ L F +GT+ +V R+ + S+G + F+ P EA +A EMN
Sbjct: 311 LYIKNLDDSISDEKLKELFSPYGTITSCKVMRDPSGVSKGSGFVAFSNPEEASRALSEMN 370
Query: 97 GHLIGSKPVIITFVELKPGQRSK 119
G ++ SKP+ + + K +R++
Sbjct: 371 GKMVVSKPLYVALAQRKEERRAR 393
>gi|449445890|ref|XP_004140705.1| PREDICTED: polyadenylate-binding protein 2-like [Cucumis sativus]
Length = 654
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 86/276 (31%), Positives = 149/276 (53%), Gaps = 15/276 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ ++D++AL + F FG++ +VA + + +S+G+ + F+ A KA ++N
Sbjct: 119 IFIKNLDKAIDHKALHDTFSAFGSILSCKVALDSSGQSKGYGFVQFDNEESALKAIEKLN 178
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G L+ K V + L+ +R V + K + VFVKNL ET EE+L F +FG
Sbjct: 179 GMLLNDKQVYVGPF-LRKQERDGVV----DKSKFNNVFVKNLSETTTEEDLNKAFSEFGT 233
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKV-- 214
+ + ++RD +GKS+ FGF+ F + A +A+ +NG+++ +V A+ ++V
Sbjct: 234 LTSIVVMRDADGKSRCFGFVNFENADDAARAVDTLNGKLVDDKEWYVGKAQKKSEREVEL 293
Query: 215 ---FPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHI 266
F + + +++ NL +I + + +ELFA FGTITS ++ D +
Sbjct: 294 KHRFEQTMKEAADKYQGANLYIKNLDDSIGDDKLKELFAPFGTITSCKVMRDPNGISRGS 353
Query: 267 GFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ F P A+ A+ MNG + SKPL V L+ K
Sbjct: 354 GFVAFSTPDEASRALVEMNGKMVVSKPLYVALAQRK 389
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 72/262 (27%), Positives = 130/262 (49%), Gaps = 22/262 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L+ +V + L + F + G + VRV R+ S G+ + ++ P +A +A +
Sbjct: 31 LYVGDLDLNVTDSQLYDIFNQVGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARALDVL 90
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N + KP+ + + P R G +F+KNL + +D + L F FG
Sbjct: 91 NFTPLNGKPIRVMYSHRDPSIRKSGAG---------NIFIKNLDKAIDHKALHDTFSAFG 141
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
+I+ K+ D +G+SKG+GF+QF + ++A KAI ++NG ++ +V G +
Sbjct: 142 SILSCKVALDSSGQSKGYGFVQFDNEESALKAIEKLNGMLLNDKQVYV-------GPFLR 194
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIE 270
+ + ++ ++ N +FV NL + + F+ FGT+TS ++ D + GF+
Sbjct: 195 KQERDGVVDKSKFNNVFVKNLSETTTEEDLNKAFSEFGTLTSIVVMRDADGKSRCFGFVN 254
Query: 271 FIMPKHATHAVSTMNGHVFKSK 292
F A AV T+NG + K
Sbjct: 255 FENADDAARAVDTLNGKLVDDK 276
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 98/183 (53%), Gaps = 9/183 (4%)
Query: 33 KENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKAR 92
K N + V NL + + L F +FGTL + V R+ + +SR F + F +A +A
Sbjct: 206 KFNNVFVKNLSETTTEEDLNKAFSEFGTLTSIVVMRDADGKSRCFGFVNFENADDAARAV 265
Query: 93 VEMNGHLIGSKPVII--------TFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDE 144
+NG L+ K + VELK + + + +Y+ +++KNL +++ +
Sbjct: 266 DTLNGKLVDDKEWYVGKAQKKSEREVELK-HRFEQTMKEAADKYQGANLYIKNLDDSIGD 324
Query: 145 EELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVS 204
++LK F FG I K++RD NG S+G GF+ F + A +A++EMNG+M+ +V+
Sbjct: 325 DKLKELFAPFGTITSCKVMRDPNGISRGSGFVAFSTPDEASRALVEMNGKMVVSKPLYVA 384
Query: 205 LAE 207
LA+
Sbjct: 385 LAQ 387
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 56/97 (57%)
Query: 23 RSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVF 82
++ KE Y+ L++ NL+ S+ + L F FGT+ +V R+ N SRG + F
Sbjct: 299 QTMKEAADKYQGANLYIKNLDDSIGDDKLKELFAPFGTITSCKVMRDPNGISRGSGFVAF 358
Query: 83 NTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSK 119
+TP EA +A VEMNG ++ SKP+ + + K +R++
Sbjct: 359 STPDEASRALVEMNGKMVVSKPLYVALAQRKEDRRAR 395
>gi|241831489|ref|XP_002414860.1| apoptosis-promoting RNA-binding protein TIA-1/TIAR, putative
[Ixodes scapularis]
gi|215509072|gb|EEC18525.1| apoptosis-promoting RNA-binding protein TIA-1/TIAR, putative
[Ixodes scapularis]
Length = 686
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 87/275 (31%), Positives = 153/275 (55%), Gaps = 15/275 (5%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ ++DN+A+ + F FG + RVA ++ S+G+ + F T A KA ++NG
Sbjct: 103 IKNLDKTIDNKAMYDTFSAFGNILSCRVATDEEAASKGYGFVHFETEEAANKAISKVNGM 162
Query: 99 LIGSKPVII-TFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNI 157
L+ +K V + F+ K +R K +G + + + V++KN + +D+++L F K+G I
Sbjct: 163 LLNNKKVYVGKFIPRK--EREKMLGDKARCFTN--VYIKNFGDELDDDKLLVIFEKYGKI 218
Query: 158 IEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPG-----K 212
K++ D++GK++GFGF+ F +AE+A+ E+NG+ + +V A+ K
Sbjct: 219 TSAKVMTDDSGKNRGFGFVSFEEPDSAERAVEELNGKDMGGRPLYVGRAQKKAERQSELK 278
Query: 213 KVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIG 267
+ F ++K L + ++V NL +++ + F FG ITS+ +++D K G
Sbjct: 279 RHFEQLKQERLNRYQGVNLYVKNLDDALDDERLRKEFGPFGNITSAKVMTDANGRSKGFG 338
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F+ F P+ AT AV+ MNG + SKPL V L+ K
Sbjct: 339 FVCFSSPEEATKAVTEMNGRIVVSKPLYVALAQRK 373
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 81/273 (29%), Positives = 136/273 (49%), Gaps = 24/273 (8%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHPEVTEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN I +KP+ I + + P R VG VF+KNL +T+D + +
Sbjct: 68 ALDTMNFDAIKNKPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKTIDNKAMYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVP 210
F FGNI+ ++ DE SKG+GF+ F + +AA KAI ++NG ++ + +V
Sbjct: 119 FSAFGNILSCRVATDEEAASKGYGFVHFETEEAANKAISKVNGMLLNNKKVYV------- 171
Query: 211 GKKVFPKVKPPLLQPARK--NKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----- 263
GK + K + +L + +++ N +++ + +F ++G ITS+ +++D
Sbjct: 172 GKFIPRKEREKMLGDKARCFTNVYIKNFGDELDDDKLLVIFEKYGKITSAKVMTDDSGKN 231
Query: 264 KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
+ GF+ F P A AV +NG +PL V
Sbjct: 232 RGFGFVSFEEPDSAERAVEELNGKDMGGRPLYV 264
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 104/179 (58%), Gaps = 9/179 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+++ N +D+ L+ F+K+G + +V + + ++RGF + F P A++A E+N
Sbjct: 194 VYIKNFGDELDDDKLLVIFEKYGKITSAKVMTDDSGKNRGFGFVSFEEPDSAERAVEELN 253
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKV--------FVKNLVETVDEEELK 148
G +G +P+ + + K +R + +Q K++++ +VKNL + +D+E L+
Sbjct: 254 GKDMGGRPLYVGRAQ-KKAERQSELKRHFEQLKQERLNRYQGVNLYVKNLDDALDDERLR 312
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
F FGNI K++ D NG+SKGFGF+ F S + A KA+ EMNGR++ +V+LA+
Sbjct: 313 KEFGPFGNITSAKVMTDANGRSKGFGFVCFSSPEEATKAVTEMNGRIVVSKPLYVALAQ 371
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 49/82 (59%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L+V NL+ ++D++ L EF FG + +V + N S+GF + F++P EA KA
Sbjct: 292 YQGVNLYVKNLDDALDDERLRKEFGPFGNITSAKVMTDANGRSKGFGFVCFSSPEEATKA 351
Query: 92 RVEMNGHLIGSKPVIITFVELK 113
EMNG ++ SKP+ + + K
Sbjct: 352 VTEMNGRIVVSKPLYVALAQRK 373
>gi|193650237|ref|XP_001943392.1| PREDICTED: polyadenylate-binding protein 1-like [Acyrthosiphon
pisum]
Length = 650
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 92/275 (33%), Positives = 150/275 (54%), Gaps = 15/275 (5%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+DN+A+ + F FG + +VA+++ S+G+ + F T A ++ ++NG
Sbjct: 94 IKNLDRSIDNKAMYDTFSAFGNILSCKVAQDETGNSKGYGFVHFETKQSATQSIEKVNGM 153
Query: 99 LIGSKPVII-TFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNI 157
L+ K V + FV R K +G K Y V++KN+ E V+E+EL F K+G I
Sbjct: 154 LLNGKKVFVGRFVGRN--DREKELGQRAKLYTN--VYIKNIDENVNEKELFEMFKKYGTI 209
Query: 158 IEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNST-FVSLAEIVPGKKVFP 216
K++ ++G S+GFGF+ F K AEKA+ E++G+ T +V+ A+ ++
Sbjct: 210 TSCKVMFKDDGSSRGFGFVAFEDPKEAEKAVTELHGKKSPEGKTYYVNRAQKKTERQQEL 269
Query: 217 KVKPPLLQPARKNK-----IFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIG 267
K K + R N+ ++V NL I++ F+ FGTI S+ ++ D K G
Sbjct: 270 KRKFEQYKIERINRYQGVNLYVKNLDDTIDDERLRREFSAFGTIKSAKVMMDDGRSKGFG 329
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F+ F P+ AT AV+ MNG + +KPL VTL+ K
Sbjct: 330 FVYFSSPEEATKAVTDMNGRIVGTKPLYVTLAQRK 364
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 77/258 (29%), Positives = 129/258 (50%), Gaps = 24/258 (9%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L V L +F G + +RV R+ S G+A + F A+A++A M
Sbjct: 4 LYVGDLHSDVTEAMLFEKFSTVGAILSIRVCRHVITRSSLGYAYVNFQNIADAERALDTM 63
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N ++ P+ I + + P R VG VF+KNL ++D + + F FG
Sbjct: 64 NFDILKGHPMRIMWSQRDPSLRKSGVG---------NVFIKNLDRSIDNKAMYDTFSAFG 114
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ +DE G SKG+GF+ F + ++A ++I ++NG ++ FV G+ V
Sbjct: 115 NILSCKVAQDETGNSKGYGFVHFETKQSATQSIEKVNGMLLNGKKVFV-------GRFVG 167
Query: 216 PKVKPPLLQPARK--NKIFVANLPSNINNSEFEELFARFGTITSSSLV-----SDKHIGF 268
+ L K +++ N+ N+N E E+F ++GTITS ++ S + GF
Sbjct: 168 RNDREKELGQRAKLYTNVYIKNIDENVNEKELFEMFKKYGTITSCKVMFKDDGSSRGFGF 227
Query: 269 IEFIMPKHATHAVSTMNG 286
+ F PK A AV+ ++G
Sbjct: 228 VAFEDPKEAEKAVTELHG 245
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 53/82 (64%), Gaps = 1/82 (1%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L+V NL+ ++D++ L EF FGT++ +V + + S+GF + F++P EA KA
Sbjct: 284 YQGVNLYVKNLDDTIDDERLRREFSAFGTIKSAKVMMD-DGRSKGFGFVYFSSPEEATKA 342
Query: 92 RVEMNGHLIGSKPVIITFVELK 113
+MNG ++G+KP+ +T + K
Sbjct: 343 VTDMNGRIVGTKPLYVTLAQRK 364
>gi|342879464|gb|EGU80711.1| hypothetical protein FOXB_08751 [Fusarium oxysporum Fo5176]
Length = 794
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 85/268 (31%), Positives = 134/268 (50%), Gaps = 24/268 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+PSV L F + G + +RV R+ S G+A + +N A+ +KA E+
Sbjct: 61 LYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNATADGEKALEEL 120
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI +P I + + P R G VF+KNL +D + L F FG
Sbjct: 121 NYTLIKGRPCRIMWSQRDPALRKNGQG---------NVFIKNLDVAIDNKALHDTFAAFG 171
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ +DENG SKG+GF+ + + +AA +AI +NG ++ +V G +
Sbjct: 172 NILSCKVAQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYV-------GHHIP 224
Query: 216 PKVKPPLLQPARKN--KIFVANLPSNINNSEFEELFARFGTITSSSLVSDKH-----IGF 268
K + + + N ++V N+ ++ +F ELF +FG +TSSSL D+ GF
Sbjct: 225 KKDRQSKFEEMKANFTNVYVKNIAPDVTEDDFRELFEKFGDVTSSSLARDQEGKSRGFGF 284
Query: 269 IEFIMPKHATHAVSTMNGHVFKSKPLKV 296
+ F + A+ AV +NG F + L V
Sbjct: 285 VNFTTHESASKAVDDLNGKDFHGQDLYV 312
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 72/265 (27%), Positives = 140/265 (52%), Gaps = 18/265 (6%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KG+ W + D R N + N + + NL+ ++DN+AL + F FG +
Sbjct: 126 KGRPCRIMWSQ---RDPALRKNGQGN-------VFIKNLDVAIDNKALHDTFAAFGNILS 175
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+VA+++N S+G+ + + T A +A +NG L+ K V + K ++SK
Sbjct: 176 CKVAQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKF--- 232
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
EE + V+VKN+ V E++ + F KFG++ + RD+ GKS+GFGF+ F ++++
Sbjct: 233 EEMKANFTNVYVKNIAPDVTEDDFRELFEKFGDVTSSSLARDQEGKSRGFGFVNFTTHES 292
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAEIVPGK--KVFPKVKPPLLQPARKNK---IFVANLPS 238
A KA+ ++NG+ +V A+ + ++ + L+ A K + +++ NL
Sbjct: 293 ASKAVDDLNGKDFHGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLDD 352
Query: 239 NINNSEFEELFARFGTITSSSLVSD 263
++++ + ++F+ FG ITS+ ++ +
Sbjct: 353 DVDDDKLRQMFSEFGPITSAKVMRE 377
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 61/229 (26%), Positives = 100/229 (43%), Gaps = 58/229 (25%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
++V N+ P V F+KFG + +AR++ +SRGF + F T A KA ++N
Sbjct: 242 VYVKNIAPDVTEDDFRELFEKFGDVTSSSLARDQEGKSRGFGFVNFTTHESASKAVDDLN 301
Query: 97 GHLIGSKPVIITFVELKPGQ-----RSKPVGPEEK--QYKKDKVFVKNLVETVDEEELKS 149
G + + + + K + +S EK +Y+ +++KNL + VD+++L+
Sbjct: 302 GKDFHGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLDDDVDDDKLRQ 361
Query: 150 HFIKFGNIIEVKIVR------DEN------------------------------------ 167
F +FG I K++R DE+
Sbjct: 362 MFSEFGPITSAKVMRETPTEGDEDKKEETQDDKEKENKEEAKEEANEETKEGEEAKDDKK 421
Query: 168 ---------GKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
GKSKGFGF+ F + A KA+ EMN RMI + +V+LA+
Sbjct: 422 TEKKSDKKLGKSKGFGFVCFSNPDDATKAVAEMNQRMINNKPLYVALAQ 470
Score = 38.1 bits (87), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 28/46 (60%)
Query: 74 SRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSK 119
S+GF + F+ P +A KA EMN +I +KP+ + + K ++S+
Sbjct: 433 SKGFGFVCFSNPDDATKAVAEMNQRMINNKPLYVALAQRKDVRKSQ 478
>gi|242025596|ref|XP_002433210.1| Polyadenylate-binding protein, putative [Pediculus humanus
corporis]
gi|212518751|gb|EEB20472.1| Polyadenylate-binding protein, putative [Pediculus humanus
corporis]
Length = 637
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 98/310 (31%), Positives = 165/310 (53%), Gaps = 25/310 (8%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK + W + D R + N + + NL+ S+DN+A+ + F FG +
Sbjct: 78 KGKPIRIMWSQ---RDPSLRKSGVGN-------VFIKNLDKSIDNKAMYDTFSTFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVII-TFVELKPGQRSKPVG 122
+VA++++ S+G+ + F T A K+ ++NG L+ K V + F+ K +R K +G
Sbjct: 128 CKVAQDESGTSKGYGFVHFETEEAANKSIDKVNGMLLNGKRVFVGKFIPRK--EREKELG 185
Query: 123 PEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYK 182
+ K++ V+VKN E ++ L+ F K+G I K++ ++GKSKGFGF+ F +
Sbjct: 186 EKAKRFTN--VYVKNFGEDFSDDLLREMFEKYGRITSHKVMSKDDGKSKGFGFVAFEDPE 243
Query: 183 AAEKAIIEMNGR-MIQHNSTFVSLAEIVPG-----KKVFPKVKPPLLQPARKNKIFVANL 236
AAEKA+ +NG+ +++ FV A+ K+ F ++K L + ++V N+
Sbjct: 244 AAEKAVASLNGKEIVEGKPLFVGRAQKKAERQQELKRKFEQLKMERLSRYQGVNLYVKNI 303
Query: 237 PSNINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSK 292
NI++ + F FGTITS+ ++ + K GF+ F + AT AV+ MNG + SK
Sbjct: 304 DDNIDDERLRKEFTPFGTITSAKVMLEDGRSKGFGFVCFSSAEEATKAVTEMNGRIVGSK 363
Query: 293 PLKVTLSGTK 302
PL V L+ K
Sbjct: 364 PLYVALAQRK 373
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 84/272 (30%), Positives = 140/272 (51%), Gaps = 21/272 (7%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHSDVTEAMLFEKFSSAGPVLSIRVCRDMITKRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN + KP+ I + + P R VG VF+KNL +++D + +
Sbjct: 68 ALDTMNYDPLKGKPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKSIDNKAMYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVP 210
F FGNI+ K+ +DE+G SKG+GF+ F + +AA K+I ++NG ++ FV + +P
Sbjct: 119 FSTFGNILSCKVAQDESGTSKGYGFVHFETEEAANKSIDKVNGMLLNGKRVFV--GKFIP 176
Query: 211 GKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS-----DKH 265
K+ + K + R ++V N + ++ E+F ++G ITS ++S K
Sbjct: 177 RKE---REKELGEKAKRFTNVYVKNFGEDFSDDLLREMFEKYGRITSHKVMSKDDGKSKG 233
Query: 266 IGFIEFIMPKHATHAVSTMNG-HVFKSKPLKV 296
GF+ F P+ A AV+++NG + + KPL V
Sbjct: 234 FGFVAFEDPEAAEKAVASLNGKEIVEGKPLFV 265
>gi|148539604|ref|NP_001091917.1| polyA-binding protein [Strongylocentrotus purpuratus]
gi|126722149|emb|CAM57104.1| polyA-binding protein [Strongylocentrotus purpuratus]
Length = 640
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 87/274 (31%), Positives = 150/274 (54%), Gaps = 14/274 (5%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+DN+A+ + F FG + +V ++N ++G+ + F T A KA ++NG
Sbjct: 103 IKNLDKSIDNKAMYDTFSAFGHILSCKVVTDENGVNKGYGFVHFETQEAANKAIEKVNGM 162
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ K V + + + +R +G +KQ+ VF+KNL E VD+ +L ++G+I+
Sbjct: 163 LLNGKKVYVGYF-IPRKERLMQMGDHQKQFTN--VFIKNLAEDVDDGKLAEFGGQYGSIL 219
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKV 218
KI+ D++ KSKGFGFI F ++AA + +NG + + + A+ + K
Sbjct: 220 SAKIMFDDS-KSKGFGFISFEDHEAANDFVKTINGSEVNGRTLYAGRAQKKAERAAELKA 278
Query: 219 KPPLLQPARKNK-----IFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGF 268
+ L+ R + +++ NL I++ + F+R+GTITS+ ++SD K GF
Sbjct: 279 RFEALKQERSTRYQGVNLYIKNLDDEIDDERLRKEFSRYGTITSAKVMSDDKANSKGFGF 338
Query: 269 IEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
+ F P+ AT AV+ MNG + +KPL V L+ K
Sbjct: 339 VCFSSPEEATKAVTEMNGRILVAKPLYVALAQRK 372
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 80/264 (30%), Positives = 133/264 (50%), Gaps = 27/264 (10%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y N L+V +L V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMNSLYVGDLHADVTEALLFEKFSTAGPILSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN + +P+ I + + P R VG VF+KNL +++D + +
Sbjct: 68 ALDTMNFDTLKGRPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKSIDNKAMYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVP 210
F FG+I+ K+V DENG +KG+GF+ F + +AA KAI ++NG ++ +V +P
Sbjct: 119 FSAFGHILSCKVVTDENGVNKGYGFVHFETQEAANKAIEKVNGMLLNGKKVYVGY--FIP 176
Query: 211 GKKVFPKVKPPLLQPARKNK----IFVANLPSNINNSEFEELFARFGTITSSSLVSD--- 263
K+ L+Q K +F+ NL ++++ + E ++G+I S+ ++ D
Sbjct: 177 RKER-------LMQMGDHQKQFTNVFIKNLAEDVDDGKLAEFGGQYGSILSAKIMFDDSK 229
Query: 264 -KHIGFIEFIMPKHATHAVSTMNG 286
K GFI F + A V T+NG
Sbjct: 230 SKGFGFISFEDHEAANDFVKTING 253
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 56/94 (59%)
Query: 26 KENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTP 85
+E + Y+ L++ NL+ +D++ L EF ++GT+ +V + S+GF + F++P
Sbjct: 285 QERSTRYQGVNLYIKNLDDEIDDERLRKEFSRYGTITSAKVMSDDKANSKGFGFVCFSSP 344
Query: 86 AEAKKARVEMNGHLIGSKPVIITFVELKPGQRSK 119
EA KA EMNG ++ +KP+ + + K +R++
Sbjct: 345 EEATKAVTEMNGRILVAKPLYVALAQRKDERRAQ 378
>gi|358386241|gb|EHK23837.1| hypothetical protein TRIVIDRAFT_169516 [Trichoderma virens Gv29-8]
Length = 747
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 87/269 (32%), Positives = 136/269 (50%), Gaps = 26/269 (9%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+PSV L F + G + +RV R+ S G+A + +N+ + +KA E+
Sbjct: 61 LYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTPDGEKALEEL 120
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI +P I + + P R G VF+KNL +D + L F FG
Sbjct: 121 NYTLIKGRPCRIMWSQRDPALRKTGQG---------NVFIKNLDVAIDNKALHDTFAAFG 171
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKV- 214
NI+ K+ +DENG SKG+GF+ + + +AA +AI +NG ++ +V +P K
Sbjct: 172 NILSCKVAQDENGNSKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGYH--IPKKDRQ 229
Query: 215 --FPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKH-----IG 267
F ++K A ++V N+ ++ + EF ELF +FG +TSSSL D+ G
Sbjct: 230 SKFEEMK------ANFTNVYVKNIGPDVTDDEFRELFEKFGDVTSSSLARDQEGKPRGFG 283
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
F+ F + A AV +NG F+ + L V
Sbjct: 284 FVNFTTHEAAFKAVEDLNGKDFRGQELYV 312
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 90/351 (25%), Positives = 162/351 (46%), Gaps = 65/351 (18%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KG+ W + D R + N + + NL+ ++DN+AL + F FG +
Sbjct: 126 KGRPCRIMWSQ---RDPALRKTGQGN-------VFIKNLDVAIDNKALHDTFAAFGNILS 175
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+VA+++N S+G+ + + T A +A +NG L+ K V + + K ++SK
Sbjct: 176 CKVAQDENGNSKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGYHIPKKDRQSKF--- 232
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
EE + V+VKN+ V ++E + F KFG++ + RD+ GK +GFGF+ F +++A
Sbjct: 233 EEMKANFTNVYVKNIGPDVTDDEFRELFEKFGDVTSSSLARDQEGKPRGFGFVNFTTHEA 292
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAEIVPGK--KVFPKVKPPLLQPARKNK---IFVANLPS 238
A KA+ ++NG+ + +V A+ + ++ + L+ A K + +++ NL
Sbjct: 293 AFKAVEDLNGKDFRGQELYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLDD 352
Query: 239 NINNSEFEELFARFGTITSSSLVSD----------------------------------- 263
++++ + ++FA FG ITS+ ++ D
Sbjct: 353 DVDDEKLRQMFAEFGPITSAKVMRDTPQEGEEEVKDQEKDKENQKEAENEAESAESAEKK 412
Query: 264 ------------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
K GF+ F P AT AV+ MN + +KPL V L+ K
Sbjct: 413 AEKKSDKKLGKSKGFGFVCFSNPDDATKAVAEMNQRMINNKPLYVALAQRK 463
Score = 44.7 bits (104), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 56/142 (39%), Gaps = 44/142 (30%)
Query: 20 EGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDE------ 73
E AR K N Y+ L++ NL+ VD++ L F +FG + +V R+ E
Sbjct: 330 EAARLEKANK--YQGVNLYIKNLDDDVDDEKLRQMFAEFGPITSAKVMRDTPQEGEEEVK 387
Query: 74 ------------------------------------SRGFAIIVFNTPAEAKKARVEMNG 97
S+GF + F+ P +A KA EMN
Sbjct: 388 DQEKDKENQKEAENEAESAESAEKKAEKKSDKKLGKSKGFGFVCFSNPDDATKAVAEMNQ 447
Query: 98 HLIGSKPVIITFVELKPGQRSK 119
+I +KP+ + + K ++S+
Sbjct: 448 RMINNKPLYVALAQRKDVRKSQ 469
>gi|367030019|ref|XP_003664293.1| hypothetical protein MYCTH_2306966 [Myceliophthora thermophila ATCC
42464]
gi|347011563|gb|AEO59048.1| hypothetical protein MYCTH_2306966 [Myceliophthora thermophila ATCC
42464]
Length = 787
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 86/269 (31%), Positives = 136/269 (50%), Gaps = 26/269 (9%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+PSV L F + G++ +RV R+ S G+A + +N+ A+ +KA E+
Sbjct: 66 LYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNSTADGEKALEEL 125
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI +P I + + P R G VF+KNL +D + L F FG
Sbjct: 126 NYTLIKGRPCRIMWSQRDPALRKTGQG---------NVFIKNLDTAIDNKALHDTFAAFG 176
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKV- 214
NI+ K+ +DENG SKG+GF+ + + +AA +AI +NG ++ +V +P K
Sbjct: 177 NILSCKVAQDENGNSKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGYH--IPKKDRQ 234
Query: 215 --FPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKH-----IG 267
F ++K A ++V N+ + EF ELF+++G +TSS+L D+ G
Sbjct: 235 SKFEEMK------ANYTNVYVKNINLEVTEEEFRELFSKYGEVTSSTLARDQEGKSRGFG 288
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
F+ F A AV +NG F+ + L V
Sbjct: 289 FVNFSTHDSAAKAVEELNGKEFRGQELYV 317
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 74/265 (27%), Positives = 137/265 (51%), Gaps = 18/265 (6%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KG+ W + D R + N + + NL+ ++DN+AL + F FG +
Sbjct: 131 KGRPCRIMWSQ---RDPALRKTGQGN-------VFIKNLDTAIDNKALHDTFAAFGNILS 180
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+VA+++N S+G+ + + T A +A +NG L+ K V + + K ++SK
Sbjct: 181 CKVAQDENGNSKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGYHIPKKDRQSKF--- 237
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
EE + V+VKN+ V EEE + F K+G + + RD+ GKS+GFGF+ F ++ +
Sbjct: 238 EEMKANYTNVYVKNINLEVTEEEFRELFSKYGEVTSSTLARDQEGKSRGFGFVNFSTHDS 297
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNK-----IFVANLPS 238
A KA+ E+NG+ + +V A+ ++ + + + NK +++ NL
Sbjct: 298 AAKAVEELNGKEFRGQELYVGRAQKKHEREEELRKSYEAARAEKANKYQGVNLYIKNLAD 357
Query: 239 NINNSEFEELFARFGTITSSSLVSD 263
+I++ + ++F+ FG ITS+ ++ D
Sbjct: 358 DIDDDKLRQMFSEFGPITSAKVMRD 382
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/231 (25%), Positives = 100/231 (43%), Gaps = 60/231 (25%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
++V N+ V + F K+G + +AR++ +SRGF + F+T A KA E+N
Sbjct: 247 VYVKNINLEVTEEEFRELFSKYGEVTSSTLARDQEGKSRGFGFVNFSTHDSAAKAVEELN 306
Query: 97 GHLIGSKPVIITFVELKPGQ-----RSKPVGPEEK--QYKKDKVFVKNLVETVDEEELKS 149
G + + + + K + +S EK +Y+ +++KNL + +D+++L+
Sbjct: 307 GKEFRGQELYVGRAQKKHEREEELRKSYEAARAEKANKYQGVNLYIKNLADDIDDDKLRQ 366
Query: 150 HFIKFGNIIEVKIVRD----------------EN-------------------------- 167
F +FG I K++RD EN
Sbjct: 367 MFSEFGPITSAKVMRDNPPDHHHSADKEGKDKENKKEGEQEAKKEGKEEGEKDGEAKEGE 426
Query: 168 -----------GKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
GKSKGFGF+ F + A KA+ EMN RM++ +V+LA+
Sbjct: 427 KKTEKKPERKLGKSKGFGFVCFSNPDDATKAVAEMNQRMVEGKPLYVALAQ 477
>gi|449501704|ref|XP_004161443.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
2-like [Cucumis sativus]
Length = 576
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 86/276 (31%), Positives = 149/276 (53%), Gaps = 15/276 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ ++D++AL + F FG++ +VA + + +S+G+ + F+ A KA ++N
Sbjct: 41 IFIKNLDKAIDHKALHDTFSAFGSILSCKVALDSSGQSKGYGFVQFDNEESALKAIEKLN 100
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G L+ K V + L+ +R V + K + VFVKNL ET EE+L F +FG
Sbjct: 101 GMLLNDKQVYVGPF-LRKQERDGVV----DKSKFNNVFVKNLSETTTEEDLNKAFSEFGT 155
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKV-- 214
+ + ++RD +GKS+ FGF+ F + A +A+ +NG+++ +V A+ ++V
Sbjct: 156 LTSIVVMRDADGKSRCFGFVNFENADDAARAVDTLNGKLVDDKEWYVGKAQKKSEREVEL 215
Query: 215 ---FPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHI 266
F + + +++ NL +I + + +ELFA FGTITS ++ D +
Sbjct: 216 KHRFEQTMKEAADKYQGANLYIKNLDDSIGDDKLKELFAPFGTITSCKVMRDPNGISRGS 275
Query: 267 GFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ F P A+ A+ MNG + SKPL V L+ K
Sbjct: 276 GFVAFSTPDEASRALVEMNGKMVVSKPLYVALAQRK 311
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 98/183 (53%), Gaps = 9/183 (4%)
Query: 33 KENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKAR 92
K N + V NL + + L F +FGTL + V R+ + +SR F + F +A +A
Sbjct: 128 KFNNVFVKNLSETTTEEDLNKAFSEFGTLTSIVVMRDADGKSRCFGFVNFENADDAARAV 187
Query: 93 VEMNGHLIGSKPVII--------TFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDE 144
+NG L+ K + VELK + + + +Y+ +++KNL +++ +
Sbjct: 188 DTLNGKLVDDKEWYVGKAQKKSEREVELK-HRFEQTMKEAADKYQGANLYIKNLDDSIGD 246
Query: 145 EELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVS 204
++LK F FG I K++RD NG S+G GF+ F + A +A++EMNG+M+ +V+
Sbjct: 247 DKLKELFAPFGTITSCKVMRDPNGISRGSGFVAFSTPDEASRALVEMNGKMVVSKPLYVA 306
Query: 205 LAE 207
LA+
Sbjct: 307 LAQ 309
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 96/195 (49%), Gaps = 21/195 (10%)
Query: 103 KPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKI 162
KP+ + + P R G +F+KNL + +D + L F FG+I+ K+
Sbjct: 20 KPIRVMYSHRDPSIRKSGAG---------NIFIKNLDKAIDHKALHDTFSAFGSILSCKV 70
Query: 163 VRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPL 222
D +G+SKG+GF+QF + ++A KAI ++NG ++ +V G + + + +
Sbjct: 71 ALDSSGQSKGYGFVQFDNEESALKAIEKLNGMLLNDKQVYV-------GPFLRKQERDGV 123
Query: 223 LQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHA 277
+ ++ N +FV NL + + F+ FGT+TS ++ D + GF+ F A
Sbjct: 124 VDKSKFNNVFVKNLSETTTEEDLNKAFSEFGTLTSIVVMRDADGKSRCFGFVNFENADDA 183
Query: 278 THAVSTMNGHVFKSK 292
AV T+NG + K
Sbjct: 184 ARAVDTLNGKLVDDK 198
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 56/97 (57%)
Query: 23 RSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVF 82
++ KE Y+ L++ NL+ S+ + L F FGT+ +V R+ N SRG + F
Sbjct: 221 QTMKEAADKYQGANLYIKNLDDSIGDDKLKELFAPFGTITSCKVMRDPNGISRGSGFVAF 280
Query: 83 NTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSK 119
+TP EA +A VEMNG ++ SKP+ + + K +R++
Sbjct: 281 STPDEASRALVEMNGKMVVSKPLYVALAQRKEDRRAR 317
>gi|395545876|ref|XP_003774823.1| PREDICTED: polyadenylate-binding protein 1-like [Sarcophilus
harrisii]
Length = 621
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 94/308 (30%), Positives = 159/308 (51%), Gaps = 23/308 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK + W + D R + N + V NLE S+DN+AL + F FG +
Sbjct: 69 KGKPVRIMWSQ---RDPSLRKSGVGN-------IFVKNLEKSIDNRALFDAFSGFGNILS 118
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V ++N S+G+ + F T A+KA +MNG ++ S V + + + +R +G
Sbjct: 119 CKVVSDENG-SKGYGFVHFETQESAEKAIEKMNGIVLKSLKVFVGHFKSR-KERELELGA 176
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
+++ V++KN E +D L F +FG + VK++ DE G+SKGFGF+ + +++
Sbjct: 177 RAREFTN--VYIKNFGEDMDNARLGEIFGRFGRALSVKVMTDERGRSKGFGFVSYATHED 234
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A++A+ EMNG+ + +V A+ K+ F ++K + + ++V NL
Sbjct: 235 AQRAVDEMNGKELNGRRIYVGRAQKKGERQTELKRHFEQIKQDRVTRYQGVNLYVKNLDD 294
Query: 239 NINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
I++ F+ FGTITS+ ++ + + GF+ F P A AV+ MNG + SKPL
Sbjct: 295 TIDDERLRTEFSPFGTITSAKVMMEGGHSRGFGFVCFSAPDEAAKAVTEMNGKLVTSKPL 354
Query: 295 KVTLSGTK 302
V L+ K
Sbjct: 355 YVALAQRK 362
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 81/257 (31%), Positives = 130/257 (50%), Gaps = 23/257 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L V L +F G + +RV R+ S G+A + F ++A++ M
Sbjct: 4 LYVGDLHHDVTEAMLYEKFSPAGPILSIRVCRDMITRSSLGYAYVNFQQSSDAQRVLETM 63
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N +I KPV I + + P R VG +FVKNL +++D L F FG
Sbjct: 64 NLDVIKGKPVRIMWSQRDPSLRKSGVG---------NIFVKNLEKSIDNRALFDAFSGFG 114
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+V DENG SKG+GF+ F + ++AEKAI +MNG +++ FV + +++
Sbjct: 115 NILSCKVVSDENG-SKGYGFVHFETQESAEKAIEKMNGIVLKSLKVFVGHFKSRKEREL- 172
Query: 216 PKVKPPLLQPARK-NKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFI 269
L AR+ +++ N +++N+ E+F RFG S +++D K GF+
Sbjct: 173 -----ELGARAREFTNVYIKNFGEDMDNARLGEIFGRFGRALSVKVMTDERGRSKGFGFV 227
Query: 270 EFIMPKHATHAVSTMNG 286
+ + A AV MNG
Sbjct: 228 SYATHEDAQRAVDEMNG 244
>gi|417399827|gb|JAA46899.1| Putative polyadenylate-binding protein rrm superfamily [Desmodus
rotundus]
Length = 370
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 83/270 (30%), Positives = 146/270 (54%), Gaps = 13/270 (4%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+DN+ L F FG + +V + + SRG+A + F + + A +A EMNG
Sbjct: 102 IKNLDRSIDNKMLYEHFSAFGKILSSKVMSD-DKGSRGYAFVHFQSQSAADRAIEEMNGA 160
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ + + FV ++ + + K + V++KN + +D+E LK F ++G I+
Sbjct: 161 LLKNCRL---FVGPFKNRKEREAELQNKANEFTNVYIKNFGDDMDDERLKEVFSQYGKIV 217
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKK 213
VK++ D +GKSKGFGF+ F +++AA++A+ MNG+ I FV A+ K+
Sbjct: 218 SVKVMTDSSGKSKGFGFVSFDTHEAAQRAVEYMNGKDICGQMVFVGRAQKKAERQAELKQ 277
Query: 214 VFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGFI 269
+F ++K R K+++ NL I+ + F+ FG+++ ++ + K G I
Sbjct: 278 MFEQLKRERFGRCRGVKLYIKNLDETIDEEQLRRAFSSFGSMSRVKVMEEEGRSKGFGLI 337
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299
F P+ AT A++ MNG V SK + + L+
Sbjct: 338 CFSCPEEATKAMAEMNGQVLGSKAINIALA 367
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 75/263 (28%), Positives = 128/263 (48%), Gaps = 25/263 (9%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y+ L+V +L V L +F G + +R+ R+ S G+A + F A+A+K
Sbjct: 7 YRHASLYVGDLPADVTEDMLFRKFNPVGPVLSIRICRDLVTRRSLGYAYVNFLNLADAQK 66
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
MN +I K + + + + R +G VF+KNL ++D + L H
Sbjct: 67 VLDTMNFDMIQGKSIRLMWSQRDAYLRKSGIG---------NVFIKNLDRSIDNKMLYEH 117
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVP 210
F FG I+ K++ D+ G S+G+ F+ F S AA++AI EMNG ++++ FV P
Sbjct: 118 FSAFGKILSSKVMSDDKG-SRGYAFVHFQSQSAADRAIEEMNGALLKNCRLFVG-----P 171
Query: 211 GKKVFPKVKPPLLQPARK--NKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----- 263
K K + LQ +++ N ++++ +E+F+++G I S +++D
Sbjct: 172 FKN--RKEREAELQNKANEFTNVYIKNFGDDMDDERLKEVFSQYGKIVSVKVMTDSSGKS 229
Query: 264 KHIGFIEFIMPKHATHAVSTMNG 286
K GF+ F + A AV MNG
Sbjct: 230 KGFGFVSFDTHEAAQRAVEYMNG 252
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 108/193 (55%), Gaps = 10/193 (5%)
Query: 23 RSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVF 82
R + NK + +++ N +D++ L F ++G + V+V + + +S+GF + F
Sbjct: 178 REAELQNKANEFTNVYIKNFGDDMDDERLKEVFSQYGKIVSVKVMTDSSGKSKGFGFVSF 237
Query: 83 NTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKD--------KVF 134
+T A++A MNG I + V + + K +R + +Q K++ K++
Sbjct: 238 DTHEAAQRAVEYMNGKDICGQMVFVGRAQ-KKAERQAELKQMFEQLKRERFGRCRGVKLY 296
Query: 135 VKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGR 194
+KNL ET+DEE+L+ F FG++ VK++ +E G+SKGFG I F + A KA+ EMNG+
Sbjct: 297 IKNLDETIDEEQLRRAFSSFGSMSRVKVM-EEEGRSKGFGLICFSCPEEATKAMAEMNGQ 355
Query: 195 MIQHNSTFVSLAE 207
++ + ++LA+
Sbjct: 356 VLGSKAINIALAQ 368
>gi|195584475|ref|XP_002082032.1| GD11341 [Drosophila simulans]
gi|194194041|gb|EDX07617.1| GD11341 [Drosophila simulans]
Length = 379
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 92/278 (33%), Positives = 150/278 (53%), Gaps = 16/278 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ ++DN+A+ + F FG + +VA ++ S+G+ + F T A + ++N
Sbjct: 92 VFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGNSKGYGFVHFETEEAANTSIDKVN 151
Query: 97 GHLIGSKPVII-TFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
G L+ K V + F+ K +R K +G + K + V+VKN E D+E+LK F +G
Sbjct: 152 GMLLNGKKVYVGKFIPRK--EREKELGEKAKLFTN--VYVKNFTEDFDDEKLKEFFEPYG 207
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGR-MIQHNSTFVSLAEIVPGKKV 214
I K++ E+GKSKGFGF+ F + +AAE A+ +NG+ M + S +V+ A+ ++
Sbjct: 208 KITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQQ 267
Query: 215 FPKVKPPLLQPARKNKIF-----VANLPSNINNSEFEELFARFGTITSSSLVSD-----K 264
K K L+ R +F V NL I++ F+ +G ITS+ +++D K
Sbjct: 268 ELKRKFEELKQKRHESVFGVNLYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDEEGRSK 327
Query: 265 HIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ F AT AV+ +NG V SKPL V L+ K
Sbjct: 328 GFGFVCFNAASEATCAVTELNGRVVGSKPLYVALAQRK 365
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 78/257 (30%), Positives = 131/257 (50%), Gaps = 22/257 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L V+ L ++F G + +RV R+ S G+A + F PA+A++A M
Sbjct: 4 LYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTM 63
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N L+ +KP+ I + + P R VG VF+KNL +D + + F FG
Sbjct: 64 NFDLVRNKPIRIMWSQRDPSLRRSGVG---------NVFIKNLDRAIDNKAIYDTFSAFG 114
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ DE G SKG+GF+ F + +AA +I ++NG ++ N V + + +P K
Sbjct: 115 NILSCKVATDEKGNSKGYGFVHFETEEAANTSIDKVNGMLL--NGKKVYVGKFIPRK--- 169
Query: 216 PKVKPPLLQPARK-NKIFVANLPSNINNSEFEELFARFGTITSSSLVS-----DKHIGFI 269
+ + L + A+ ++V N + ++ + +E F +G ITS ++S K GF+
Sbjct: 170 -EREKELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFV 228
Query: 270 EFIMPKHATHAVSTMNG 286
F + A AV +NG
Sbjct: 229 AFETTEAAEAAVQALNG 245
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 47/82 (57%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L+V NL+ ++D+ L F +G + +V ++ S+GF + FN +EA A E+N
Sbjct: 289 LYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDEEGRSKGFGFVCFNAASEATCAVTELN 348
Query: 97 GHLIGSKPVIITFVELKPGQRS 118
G ++GSKP+ + + K +++
Sbjct: 349 GRVVGSKPLYVALAQRKEERKA 370
Score = 42.4 bits (98), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 42/81 (51%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGF--IEFIMPKHATHAVSTM 284
++V +LP ++N S + F+ G + S + D + +G+ + F P A A+ TM
Sbjct: 4 LYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTM 63
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N + ++KP+++ S P +
Sbjct: 64 NFDLVRNKPIRIMWSQRDPSL 84
>gi|327271804|ref|XP_003220677.1| PREDICTED: embryonic polyadenylate-binding protein-like [Anolis
carolinensis]
Length = 635
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 95/308 (30%), Positives = 157/308 (50%), Gaps = 23/308 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KG+ + W + D G R + N + + NL+ S+DN+AL + F FG +
Sbjct: 78 KGRPIRIMWSQ---RDPGLRKSGVGN-------IFIKNLDDSIDNKALYDTFSAFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V ++N SRG+ + F T A +A MNG L+ + V FV +R +
Sbjct: 128 CKVVCDENG-SRGYGFVHFETHEAANRAIATMNGMLLNDRKV---FVGNFKSRREREAEY 183
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
K + V++KN E + E L+ F FG + VK++ D G+SKGFGF+ F ++
Sbjct: 184 GAKAMEFTNVYIKNFGEEMSNERLQETFSIFGKTLSVKVMTDNIGRSKGFGFVNFEKHQD 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A+KA+ +MNG+ I +V A+ K+ F ++K + + ++V NL
Sbjct: 244 AQKAVEDMNGKEINGRMLYVGRAQKRMERQSELKRKFEQIKQERVSRYQGVNLYVKNLDD 303
Query: 239 NINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
I++ + F+ +GTITS+ ++++ K GF+ F P+ AT AV+ MNG + +KPL
Sbjct: 304 GIDDERLRKEFSPYGTITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPL 363
Query: 295 KVTLSGTK 302
V L+ K
Sbjct: 364 YVALAQRK 371
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 85/277 (30%), Positives = 130/277 (46%), Gaps = 33/277 (11%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F G + +RV R+ S G+A I F PA+A++
Sbjct: 8 YPLASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDVATRRSLGYAYINFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I +P+ I + + PG R VG +F+KNL +++D + L
Sbjct: 68 ALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVG---------NIFIKNLDDSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVS------ 204
F FGNI+ K+V DENG S+G+GF+ F +++AA +AI MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SRGYGFVHFETHEAANRAIATMNGMLLNDRKVFVGNFKSRR 177
Query: 205 LAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD- 263
E G K +++ N ++N +E F+ FG S +++D
Sbjct: 178 EREAEYGAKAM-----------EFTNVYIKNFGEEMSNERLQETFSIFGKTLSVKVMTDN 226
Query: 264 ----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
K GF+ F + A AV MNG + L V
Sbjct: 227 IGRSKGFGFVNFEKHQDAQKAVEDMNGKEINGRMLYV 263
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGF--IEFIMPKHATHAVSTM 284
++V +L ++ + E F+ G I S + D + +G+ I F P A A+ TM
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N V K +P+++ S PG+
Sbjct: 73 NFEVIKGRPIRIMWSQRDPGL 93
>gi|363894957|gb|AEW42987.1| putative polyadenylate-binding protein 1, partial [Haliotis
diversicolor]
Length = 563
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 90/280 (32%), Positives = 157/280 (56%), Gaps = 22/280 (7%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S+DN+AL + F FG + ++A ++N S+G+ + F T A++A ++N
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKIASDENG-SKGYGFVHFETEEAARQAIEKVN 159
Query: 97 GHLIGSKPVIIT-FVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
G L+ K V + F+ K +R +G + K++ + V++KN + +D+++++ F FG
Sbjct: 160 GMLLNGKKVYVGKFIPRK--ERIALLGDKMKRF--NNVYIKNFGDELDDDKIRELFDPFG 215
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVS---------LA 206
II K++ DE GKS+GFGF+ + +AAEKA+ +NG + + A
Sbjct: 216 KIISAKVMTDEIGKSRGFGFVSYEEPEAAEKAVDNLNGMELGGGKVLYAGRAQKKAERQA 275
Query: 207 EIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD--- 263
E+ K F K+K + + ++V NL +++ + F++FGTITS+ ++S+
Sbjct: 276 EL---KDKFEKIKMERINRYQGVNLYVKNLDDVVDDERLRKEFSQFGTITSARVMSEGGR 332
Query: 264 -KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
K GF+ F P+ AT AV+ MNG + SKPL V L+ K
Sbjct: 333 SKGFGFVCFSSPEEATKAVTEMNGRIIVSKPLYVALAQRK 372
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 82/261 (31%), Positives = 134/261 (51%), Gaps = 21/261 (8%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHPDVTEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN I +P+ I + + P R VG VF+KNL +++D + L
Sbjct: 68 ALDTMNFDTIKGRPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVP 210
F FGNI+ KI DENG SKG+GF+ F + +AA +AI ++NG ++ N V + + +P
Sbjct: 119 FSAFGNILSCKIASDENG-SKGYGFVHFETEEAARQAIEKVNGMLL--NGKKVYVGKFIP 175
Query: 211 GKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KH 265
K+ + + R N +++ N +++ + ELF FG I S+ +++D +
Sbjct: 176 RKERIALLGDKM---KRFNNVYIKNFGDELDDDKIRELFDPFGKIISAKVMTDEIGKSRG 232
Query: 266 IGFIEFIMPKHATHAVSTMNG 286
GF+ + P+ A AV +NG
Sbjct: 233 FGFVSYEEPEAAEKAVDNLNG 253
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 53/87 (60%), Gaps = 1/87 (1%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L+V NL+ VD++ L EF +FGT+ RV ++ S+GF + F++P EA KA
Sbjct: 292 YQGVNLYVKNLDDVVDDERLRKEFSQFGTITSARVM-SEGGRSKGFGFVCFSSPEEATKA 350
Query: 92 RVEMNGHLIGSKPVIITFVELKPGQRS 118
EMNG +I SKP+ + + K +R+
Sbjct: 351 VTEMNGRIIVSKPLYVALAQRKEDRRA 377
>gi|313218343|emb|CBY41581.1| unnamed protein product [Oikopleura dioica]
Length = 613
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 96/312 (30%), Positives = 158/312 (50%), Gaps = 26/312 (8%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK + W + D R + N + + NL+ ++DN+ L + F FG +
Sbjct: 78 KGKAIRIMWSQ---RDPALRKSGVGN-------IFIKNLDKTIDNKMLYDTFSAFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V N ES+G+ + F T A KA +++G L+ K V + + + G+R + G
Sbjct: 128 CKVNVNLAGESKGYGFVHFETEEAAVKAIEKLDGMLMNDKKVFVGRFKSR-GERVREYGD 186
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
KQ+ VF+KNL D+ +L F + G+++ V + DENGKS+ FGF+ F +++
Sbjct: 187 RAKQFTN--VFIKNLPAEWDDAKLTEVFGEHGSVMSVALATDENGKSRQFGFVSFETHEC 244
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNK-----IFVANLPS 238
AEK + +++ + + FV A+ ++ KVK L+ R + ++V NL
Sbjct: 245 AEKVVEKLHDKEFEGKKIFVGRAQKKAERQAELKVKFEKLKHERNQRYQGVNLYVKNLDD 304
Query: 239 NINNSEFEELFARFGTITSSSLVSD--------KHIGFIEFIMPKHATHAVSTMNGHVFK 290
+I + E FA +G ITSS +++D K GF+ F + AT AV+ MNG +
Sbjct: 305 SITDDILREHFAPYGNITSSKVMTDTDVEGTRSKGFGFVCFTSAEEATKAVTEMNGRIIA 364
Query: 291 SKPLKVTLSGTK 302
SKPL V L+ K
Sbjct: 365 SKPLYVALAQRK 376
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 73/267 (27%), Positives = 130/267 (48%), Gaps = 20/267 (7%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L P L ++F + G + +RV R+ S G+A + F P +A++
Sbjct: 8 YPMASLYVGDLHPEATEAMLYDKFSQAGPVLSIRVCRDMITRRSLGYAYVNFQRPEDAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN + K + I + + P R VG +F+KNL +T+D + L
Sbjct: 68 AIDTMNFDELKGKAIRIMWSQRDPALRKSGVG---------NIFIKNLDKTIDNKMLYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVP 210
F FGNI+ K+ + G+SKG+GF+ F + +AA KAI +++G ++ FV
Sbjct: 119 FSAFGNILSCKVNVNLAGESKGYGFVHFETEEAAVKAIEKLDGMLMNDKKVFVGRF---- 174
Query: 211 GKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KH 265
K +V+ + + +F+ NLP+ ++++ E+F G++ S +L +D +
Sbjct: 175 -KSRGERVREYGDRAKQFTNVFIKNLPAEWDDAKLTEVFGEHGSVMSVALATDENGKSRQ 233
Query: 266 IGFIEFIMPKHATHAVSTMNGHVFKSK 292
GF+ F + A V ++ F+ K
Sbjct: 234 FGFVSFETHECAEKVVEKLHDKEFEGK 260
>gi|82802757|gb|ABB92429.1| PABP3 [Hylobates lar]
Length = 635
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 96/308 (31%), Positives = 162/308 (52%), Gaps = 23/308 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK L W + D R + N + V NL+ S++N+AL + FG +
Sbjct: 78 KGKPLRIMWSQ---RDPSLRKSGVGN-------IFVKNLDKSINNKALYDTVSAFGNVLS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V ++N S+G+ + F T A++A +MNG + V + + + +R +G
Sbjct: 128 CKVVCDENG-SKGYGFVHFGTREAAERAIEKMNGIPLNDCKVFVGRFKSR-KEREAELGA 185
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
K++ V++KN E +D+E LK F KFG + VK++ D++GKSKGFGF+ F ++
Sbjct: 186 RAKEFPN--VYIKNFGEDMDDERLKDLFGKFGPTLSVKVMTDQSGKSKGFGFVSFEKHED 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A+KA+ EMNG+ + +V A+ K+ F ++K + + ++V NL
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNLDD 303
Query: 239 NINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
I++ + F+ FGTITS+ ++ + K GF+ F P+ AT AV+ MNG + ++PL
Sbjct: 304 AIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATEPL 363
Query: 295 KVTLSGTK 302
V L+ K
Sbjct: 364 YVALAQRK 371
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 84/279 (30%), Positives = 131/279 (46%), Gaps = 37/279 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F + G + +RV R+ S +A + F P +A+
Sbjct: 8 YPTASLYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRSSNYAYVNFQHPKDAEH 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KP+ I + + P R VG +FVKNL ++++ + L
Sbjct: 68 ALDTMNFDVIKGKPLRIMWSQRDPSLRKSGVG---------NIFVKNLDKSINNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
FGN++ K+V DENG SKG+GF+ F + +AAE+AI +MNG + FV
Sbjct: 119 VSAFGNVLSCKVVCDENG-SKGYGFVHFGTREAAERAIEKMNGIPLNDCKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K FP V ++ N ++++ ++LF +FG S +++
Sbjct: 178 EREAELGARAKEFPNV-------------YIKNFGEDMDDERLKDLFGKFGPTLSVKVMT 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
D K GF+ F + A AV MNG K + V
Sbjct: 225 DQSGKSKGFGFVSFEKHEDAQKAVDEMNGKELNGKQIYV 263
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTM 284
++V +L ++ + E F+R G I S + D + ++ F PK A HA+ TM
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRSSNYAYVNFQHPKDAEHALDTM 72
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N V K KPL++ S P +
Sbjct: 73 NFDVIKGKPLRIMWSQRDPSL 93
>gi|367040559|ref|XP_003650660.1| hypothetical protein THITE_2110364 [Thielavia terrestris NRRL 8126]
gi|346997921|gb|AEO64324.1| hypothetical protein THITE_2110364 [Thielavia terrestris NRRL 8126]
Length = 777
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 87/269 (32%), Positives = 135/269 (50%), Gaps = 26/269 (9%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+PSV L F + G++ +RV R+ S G+A + +N+ + +KA E+
Sbjct: 66 LYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNSTQDGEKALEEL 125
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI +P I + + P R G VF+KNL +D + L F FG
Sbjct: 126 NYTLIKGRPCRIMWSQRDPALRKTGQG---------NVFIKNLDVAIDNKALHDTFAAFG 176
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKV- 214
NI+ K+ +DENG SKG+GF+ + + +AA +AI +NG ++ +V +P K
Sbjct: 177 NILSCKVAQDENGNSKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGYH--IPKKDRQ 234
Query: 215 --FPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIG 267
F ++K A ++V N+ + EF ELFA++G +TSSSL D + G
Sbjct: 235 SKFEEMK------ANFTNVYVKNINHEVTEEEFRELFAKYGEVTSSSLARDNEGKSRGFG 288
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
F+ F A AV +NG F+ + L V
Sbjct: 289 FVNFTTHASAAKAVEELNGKEFRGQELYV 317
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 93/358 (25%), Positives = 160/358 (44%), Gaps = 78/358 (21%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KG+ W + D R + N + + NL+ ++DN+AL + F FG +
Sbjct: 131 KGRPCRIMWSQ---RDPALRKTGQGN-------VFIKNLDVAIDNKALHDTFAAFGNILS 180
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+VA+++N S+G+ + + T A +A +NG L+ K V + + K ++SK
Sbjct: 181 CKVAQDENGNSKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGYHIPKKDRQSKF--- 237
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
EE + V+VKN+ V EEE + F K+G + + RD GKS+GFGF+ F ++ +
Sbjct: 238 EEMKANFTNVYVKNINHEVTEEEFRELFAKYGEVTSSSLARDNEGKSRGFGFVNFTTHAS 297
Query: 184 AEKAIIEMNGRMIQHNSTFVSLA--------EIVPGKKVFPKVKPPLLQPARKNK---IF 232
A KA+ E+NG+ + +V A E+ +K + + L+ A K + ++
Sbjct: 298 AAKAVEELNGKEFRGQELYVGRAQKKHEREEEL---RKSYEAAR---LEKANKYQGVNLY 351
Query: 233 VANLPSNINNSEFEELFARFGTITSSSLVSD----------------------------- 263
+ NL ++++ + ++F+ FG ITS+ ++ D
Sbjct: 352 IKNLADDVDDDKLRQMFSEFGPITSAKVMRDAPPEPPAGSEGDKEGKDKENKKESEKEGE 411
Query: 264 -------------------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
K GF+ F P AT AV+ MN + KPL V L+ K
Sbjct: 412 GEAAEKKTEKKVERKLGKSKGFGFVCFSNPDDATKAVAEMNQRMVDGKPLYVALAQRK 469
Score = 41.2 bits (95), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 53/143 (37%), Gaps = 45/143 (31%)
Query: 20 EGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDE------ 73
E AR K N Y+ L++ NL VD+ L F +FG + +V R+ E
Sbjct: 335 EAARLEKANK--YQGVNLYIKNLADDVDDDKLRQMFSEFGPITSAKVMRDAPPEPPAGSE 392
Query: 74 -------------------------------------SRGFAIIVFNTPAEAKKARVEMN 96
S+GF + F+ P +A KA EMN
Sbjct: 393 GDKEGKDKENKKESEKEGEGEAAEKKTEKKVERKLGKSKGFGFVCFSNPDDATKAVAEMN 452
Query: 97 GHLIGSKPVIITFVELKPGQRSK 119
++ KP+ + + K ++S+
Sbjct: 453 QRMVDGKPLYVALAQRKDVRKSQ 475
>gi|402870468|ref|XP_003899242.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Papio anubis]
Length = 496
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 88/270 (32%), Positives = 142/270 (52%), Gaps = 13/270 (4%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+DN+ L F FG + +V + + S+G+A + F + A +A EMNG
Sbjct: 228 IKNLDKSIDNKTLYEHFSGFGKILSSKVMSD-DQGSKGYAFVHFQNQSAADRAIEEMNGR 286
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ S V FV ++ + K + +++KN +D+E LK F K+G +
Sbjct: 287 LLKSCKV---FVGRFKNRKDREAELRSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTL 343
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKK 213
VK++ D GKSKGFGF+ F S++AA+KA+ EMNGR I FV A+ K+
Sbjct: 344 SVKVMTDSRGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQ 403
Query: 214 VFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGFI 269
+F ++K ++ + K++V NL I++ + F+ FG+I ++ K GFI
Sbjct: 404 MFEQLKRERIRGYQGVKLYVKNLDDTIDDEKLRNEFSSFGSIIRVKVMQQEGQSKGFGFI 463
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299
F + AT A+ MNG SKP+ + L+
Sbjct: 464 CFSSLEDATKAMIEMNGRFLGSKPISIALA 493
Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 63/179 (35%), Positives = 106/179 (59%), Gaps = 10/179 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+++ N +D++ L + F K+G V+V + +S+GF + F++ AKKA EMN
Sbjct: 318 IYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSRGKSKGFGFVSFDSHEAAKKAVEEMN 377
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKD--------KVFVKNLVETVDEEELK 148
G I + + + + K +R + +Q K++ K++VKNL +T+D+E+L+
Sbjct: 378 GRDINGQLIFVGRAQ-KKVERQAELKQMFEQLKRERIRGYQGVKLYVKNLDDTIDDEKLR 436
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
+ F FG+II VK+++ E G+SKGFGFI F S + A KA+IEMNGR + ++LA+
Sbjct: 437 NEFSSFGSIIRVKVMQQE-GQSKGFGFICFSSLEDATKAMIEMNGRFLGSKPISIALAQ 494
>gi|290981403|ref|XP_002673420.1| polyadenylate binding protein [Naegleria gruberi]
gi|284087003|gb|EFC40676.1| polyadenylate binding protein [Naegleria gruberi]
Length = 571
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 95/284 (33%), Positives = 150/284 (52%), Gaps = 23/284 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVAR--------NKNDESRGFAIIVFNTPAEA 88
+ + NL+ S+DN+AL + F FG + +V + N ES G+ + F T A
Sbjct: 96 IFIKNLDKSIDNKALYDTFSAFGNILSCKVCQATKKGDNGGDNVESAGYGFVHFETQEAA 155
Query: 89 KKARVEMNGHLIGSKPVIIT-FVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEEL 147
+KA ++NG L+ K V + FV K +R K + E+ ++VKNL +VDE+EL
Sbjct: 156 EKAIAKINGMLLNGKQVFVGPFV--KKTERLKILSNEDS---FTNIYVKNLDASVDEKEL 210
Query: 148 KSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
F KFG I ++R ENG SK FGFI F + +A AI EMN + ++ FV A+
Sbjct: 211 SEVFSKFGEIQNAVVMRGENGASKEFGFINFADHASALIAIDEMNEKDFKNKKLFVGRAQ 270
Query: 208 -----IVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
K+ F K+K + + ++V NL ++++ + F++FG ITS+ ++S
Sbjct: 271 KKNERRAKLKEYFQKLKQEKVNKYKGLNLYVKNLDDSVDDERLRQEFSKFGDITSAKVMS 330
Query: 263 D----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
D + GF+ F P+ A A++ M+GH+ SKPL V + K
Sbjct: 331 DNKQSRGFGFVCFKTPEAANKALTEMSGHMIGSKPLYVNFAQPK 374
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/88 (45%), Positives = 56/88 (63%), Gaps = 1/88 (1%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
YK L+V NL+ SVD++ L EF KFG + +V + N +SRGF + F TP A KA
Sbjct: 294 YKGLNLYVKNLDDSVDDERLRQEFSKFGDITSAKVMSD-NKQSRGFGFVCFKTPEAANKA 352
Query: 92 RVEMNGHLIGSKPVIITFVELKPGQRSK 119
EM+GH+IGSKP+ + F + K +RS+
Sbjct: 353 LTEMSGHMIGSKPLYVNFAQPKELRRSQ 380
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 83/183 (45%), Gaps = 25/183 (13%)
Query: 128 YKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEK 186
Y ++V +L E + E L F + G II ++I RD KS G+ ++ F + + AE+
Sbjct: 3 YSSASLYVGDLHEEISEALLFDLFHEVGPIISIRICRDAMTRKSLGYAYVNFQNPQDAER 62
Query: 187 AIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFE 246
A+ +N + S+ I P + ++ + P + + N IF+ NL +I+N
Sbjct: 63 ALDTLN---------YASVKGI-PIRIMWSQRDPSIRKSGIGN-IFIKNLDKSIDNKALY 111
Query: 247 ELFARFGTITSSSL-------------VSDKHIGFIEFIMPKHATHAVSTMNGHVFKSKP 293
+ F+ FG I S + V GF+ F + A A++ +NG + K
Sbjct: 112 DTFSAFGNILSCKVCQATKKGDNGGDNVESAGYGFVHFETQEAAEKAIAKINGMLLNGKQ 171
Query: 294 LKV 296
+ V
Sbjct: 172 VFV 174
>gi|355687608|gb|EHH26192.1| hypothetical protein EGK_16094 [Macaca mulatta]
gi|355749570|gb|EHH53969.1| hypothetical protein EGM_14691 [Macaca fascicularis]
Length = 370
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 88/270 (32%), Positives = 143/270 (52%), Gaps = 13/270 (4%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+DN+ L F FG + +V + + S+G+A + F + A +A EMNG
Sbjct: 102 IKNLDKSIDNKTLYEHFSGFGKILSSKVMSD-DQGSKGYAFVHFQNQSAADRAIEEMNGK 160
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ S V FV ++ + K + +++KN +D+E LK F K+G +
Sbjct: 161 LLKSCKV---FVGRFKNRKDREAELRSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTL 217
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKK 213
VK++ D +GKSKGFGF+ F S++AA+KA+ EMNGR I FV A+ K+
Sbjct: 218 SVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQ 277
Query: 214 VFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGFI 269
+F ++K ++ + K++V NL I++ + F+ FG+I ++ K GFI
Sbjct: 278 MFEQLKRERIRGYQGVKLYVKNLDDTIDDEKLRNEFSSFGSIIRVKVMQQEGQSKGFGFI 337
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299
F + AT A+ MNG SKP+ + L+
Sbjct: 338 CFSSLEDATKAMIEMNGCFLGSKPISIALA 367
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 62/179 (34%), Positives = 106/179 (59%), Gaps = 10/179 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+++ N +D++ L + F K+G V+V + + +S+GF + F++ AKKA EMN
Sbjct: 192 IYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMN 251
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKD--------KVFVKNLVETVDEEELK 148
G I + + + + K +R + +Q K++ K++VKNL +T+D+E+L+
Sbjct: 252 GRDINGQLIFVGRAQ-KKVERQAELKQMFEQLKRERIRGYQGVKLYVKNLDDTIDDEKLR 310
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
+ F FG+II VK+++ E G+SKGFGFI F S + A KA+IEMNG + ++LA+
Sbjct: 311 NEFSSFGSIIRVKVMQQE-GQSKGFGFICFSSLEDATKAMIEMNGCFLGSKPISIALAQ 368
>gi|170674510|gb|ACB30143.1| poly(A) RNA binding protein [Epichloe festucae]
Length = 739
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 85/268 (31%), Positives = 136/268 (50%), Gaps = 24/268 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+PSV L F + G + +RV R+ S G+A + +N+ ++ +KA E+
Sbjct: 61 LYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTSDGEKALEEL 120
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N +I +P I + + P R G VF+KNL +D + L F FG
Sbjct: 121 NYTIIKGRPCRIMWSQRDPALRKTGQG---------NVFIKNLDVAIDNKALHDTFAAFG 171
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ +DE+G SKG+GF+ + + +AA++AI +NG ++ +V G +
Sbjct: 172 NILSCKVAQDEHGNSKGYGFVHYETDEAAQQAIKHVNGMLLNEKKVYV-------GHHIP 224
Query: 216 PKVKPPLLQPARKN--KIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGF 268
K + + + N I+V N+ ++ EF ELF R+G ITSSSL D + GF
Sbjct: 225 KKDRQSKFEEMKANFTNIYVKNVNPEASDDEFRELFERYGEITSSSLARDQDGKSRGFGF 284
Query: 269 IEFIMPKHATHAVSTMNGHVFKSKPLKV 296
+ + + A AV +NG FK + L V
Sbjct: 285 VNYTTHESAYKAVDELNGKDFKGQDLYV 312
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 78/312 (25%), Positives = 150/312 (48%), Gaps = 51/312 (16%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ ++DN+AL + F FG + +VA++++ S+G+ + + T A++A +NG
Sbjct: 151 IKNLDVAIDNKALHDTFAAFGNILSCKVAQDEHGNSKGYGFVHYETDEAAQQAIKHVNGM 210
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ K V + K ++SK EE + ++VKN+ ++E + F ++G I
Sbjct: 211 LLNEKKVYVGHHIPKKDRQSKF---EEMKANFTNIYVKNVNPEASDDEFRELFERYGEIT 267
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGK--KVFP 216
+ RD++GKS+GFGF+ + ++++A KA+ E+NG+ + +V A+ + ++
Sbjct: 268 SSSLARDQDGKSRGFGFVNYTTHESAYKAVDELNGKDFKGQDLYVGRAQKKHEREEELRK 327
Query: 217 KVKPPLLQPARKNK---IFVANLPSNINNSEFEELFARFGTITSSSLVSD---------- 263
+ L+ A K + +++ NL ++++ + +F+ FG ITS+ ++ D
Sbjct: 328 SYEAARLEKASKYQGVNLYIKNLDDDVDDEKLRHMFSEFGPITSAKVMRDAPSDGSDEEK 387
Query: 264 ---------------------------------KHIGFIEFIMPKHATHAVSTMNGHVFK 290
K GF+ F P AT AV+ M+ +
Sbjct: 388 EDEQEAEPKKEGNVVEADEEGSEKKGDKKFGKSKGFGFVCFSNPDDATKAVAEMSQRMIN 447
Query: 291 SKPLKVTLSGTK 302
KPL V L+ K
Sbjct: 448 GKPLYVALAQRK 459
Score = 42.0 bits (97), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 58/138 (42%), Gaps = 40/138 (28%)
Query: 20 EGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARN---------- 69
E AR K + Y+ L++ NL+ VD++ L + F +FG + +V R+
Sbjct: 330 EAARLEKASK--YQGVNLYIKNLDDDVDDEKLRHMFSEFGPITSAKVMRDAPSDGSDEEK 387
Query: 70 ------------------------KNDE----SRGFAIIVFNTPAEAKKARVEMNGHLIG 101
K D+ S+GF + F+ P +A KA EM+ +I
Sbjct: 388 EDEQEAEPKKEGNVVEADEEGSEKKGDKKFGKSKGFGFVCFSNPDDATKAVAEMSQRMIN 447
Query: 102 SKPVIITFVELKPGQRSK 119
KP+ + + K ++S+
Sbjct: 448 GKPLYVALAQRKDVRKSQ 465
>gi|346974495|gb|EGY17947.1| polyadenylate-binding protein [Verticillium dahliae VdLs.17]
Length = 759
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 87/291 (29%), Positives = 142/291 (48%), Gaps = 24/291 (8%)
Query: 14 EGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-ND 72
+G +D G N + L+V LEP V L F G + +RV R+
Sbjct: 40 QGDADTAGPTPNSAVPQPQASASLYVGELEPQVTEAMLFELFSHIGPVASIRVCRDAVTR 99
Query: 73 ESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDK 132
S G+A + +NT ++ +KA E+N +I +P I + + P R G
Sbjct: 100 RSLGYAYVNYNTTSDGEKALEELNYTVINGRPCRIMWSQRDPALRKNGQG---------N 150
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMN 192
VF+KNL +D + L F FGNI+ K+ +DE+G SKG+GF+ + + +AA +AI +N
Sbjct: 151 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDEHGNSKGYGFVHYETDEAAAQAIKHVN 210
Query: 193 GRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKN--KIFVANLPSNINNSEFEELFA 250
G ++ +V G + K + + + N ++V N+ S ++ EF +LF
Sbjct: 211 GMLLNEKKVYV-------GHHIPKKDRQSKFEEMKANFTNVYVKNINSEASDDEFRDLFT 263
Query: 251 RFGTITSSSLVSDKH-----IGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
++G +TSSSL D+ GF+ F + A+ AV +NG F+ + L V
Sbjct: 264 KYGEVTSSSLARDQEGKSRGFGFVNFTTHEAASQAVEELNGKDFRGQDLYV 314
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 86/355 (24%), Positives = 158/355 (44%), Gaps = 70/355 (19%)
Query: 5 GKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDV 64
G+ W + D R N + N + + NL+ ++DN+AL + F FG +
Sbjct: 129 GRPCRIMWSQ---RDPALRKNGQGN-------VFIKNLDVAIDNKALHDTFAAFGNILSC 178
Query: 65 RVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPE 124
+VA++++ S+G+ + + T A +A +NG L+ K V + K ++SK E
Sbjct: 179 KVAQDEHGNSKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKF---E 235
Query: 125 EKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAA 184
E + V+VKN+ ++E + F K+G + + RD+ GKS+GFGF+ F +++AA
Sbjct: 236 EMKANFTNVYVKNINSEASDDEFRDLFTKYGEVTSSSLARDQEGKSRGFGFVNFTTHEAA 295
Query: 185 EKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNK-----IFVANLPSN 239
+A+ E+NG+ + +V A+ ++ + + + NK +++ NL +
Sbjct: 296 SQAVEELNGKDFRGQDLYVGRAQKKHEREEELRKSYEAARQEKANKYQGVNLYIKNLSDD 355
Query: 240 INNSEFEELFARFGTITSSSLVSD------------------------------------ 263
+++ + +F+ FG ITS+ ++ D
Sbjct: 356 VDDEKLRAMFSEFGPITSAKVMRDSISEGEDEEKAEEETPAPEAEVKKEDSEADADSQEA 415
Query: 264 ----------------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
K GF+ F P+ AT AV+ MN + +KPL V L+ K
Sbjct: 416 ADKKDAKKGDKKLGKSKGFGFVCFSNPEDATKAVADMNQRMIDNKPLYVALAQRK 470
>gi|332030569|gb|EGI70257.1| Polyadenylate-binding protein 1 [Acromyrmex echinatior]
Length = 657
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 89/275 (32%), Positives = 155/275 (56%), Gaps = 15/275 (5%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ ++DN+A+ + F FG + +V ++++ S+G+ + F T A K+ ++NG
Sbjct: 125 IKNLDKNIDNKAMYDTFSAFGNILSCKVTQDESGASKGYGFVHFETEEAANKSIEKVNGM 184
Query: 99 LIGSKPVII-TFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNI 157
L+ K V + F+ K +R K +G + K + V+VKN E + +++LK F K+G I
Sbjct: 185 LLNGKKVYVGKFIPRK--ERQKELGEKAKLFTN--VYVKNFGEDMTDDKLKEMFEKYGTI 240
Query: 158 IEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMI-QHNSTFVSLAEIVPGKKVFP 216
K++ ++GKS+GFGF+ F +AE+A++++NG+ I + +V A+ ++
Sbjct: 241 TSHKVMIKDDGKSRGFGFVAFEDPNSAEQAVLDLNGKEIAEGKCMYVGRAQKKAERQQEL 300
Query: 217 KVKPPLLQPARKNK-----IFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIG 267
K K L+ R N+ ++V NL I++ + F FGTITS+ ++ + K G
Sbjct: 301 KRKFEQLKIERLNRYQGVNLYVKNLDDTIDDERLRKEFTPFGTITSAKVMMEEGRSKGFG 360
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F+ F P+ AT AV+ MNG + SKPL V L+ K
Sbjct: 361 FVCFSQPEEATKAVTEMNGRIVGSKPLYVALAQRK 395
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 79/285 (27%), Positives = 134/285 (47%), Gaps = 46/285 (16%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAE--- 87
Y L+V NL + L +F G + +RV R+ S G+A + F PA+
Sbjct: 8 YPMASLYVGNLHTDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPADVVV 67
Query: 88 -------------------AKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQY 128
A++A MN +I +P+ I + + P R VG
Sbjct: 68 VGDGGSGGGGCGSGSGSQRAERALDTMNFDIIKGRPIRIMWSQRDPSLRKSGVG------ 121
Query: 129 KKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAI 188
VF+KNL + +D + + F FGNI+ K+ +DE+G SKG+GF+ F + +AA K+I
Sbjct: 122 ---NVFIKNLDKNIDNKAMYDTFSAFGNILSCKVTQDESGASKGYGFVHFETEEAANKSI 178
Query: 189 IEMNGRMIQHNSTFVSLAEIVPGKKVFPKV--KPPLLQPARKNKIFVANLPSNINNSEFE 246
++NG ++ N V + + +P K+ ++ K L ++V N ++ + + +
Sbjct: 179 EKVNGMLL--NGKKVYVGKFIPRKERQKELGEKAKLF-----TNVYVKNFGEDMTDDKLK 231
Query: 247 ELFARFGTITSSSLV-----SDKHIGFIEFIMPKHATHAVSTMNG 286
E+F ++GTITS ++ + GF+ F P A AV +NG
Sbjct: 232 EMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPNSAEQAVLDLNG 276
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 49/82 (59%), Gaps = 1/82 (1%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L+V NL+ ++D++ L EF FGT+ +V + S+GF + F+ P EA KA
Sbjct: 315 YQGVNLYVKNLDDTIDDERLRKEFTPFGTITSAKVMMEEG-RSKGFGFVCFSQPEEATKA 373
Query: 92 RVEMNGHLIGSKPVIITFVELK 113
EMNG ++GSKP+ + + K
Sbjct: 374 VTEMNGRIVGSKPLYVALAQRK 395
>gi|291401234|ref|XP_002716993.1| PREDICTED: poly(A) binding protein, cytoplasmic 4-like [Oryctolagus
cuniculus]
Length = 370
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 81/272 (29%), Positives = 147/272 (54%), Gaps = 13/272 (4%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S+DN++L F FG + +V + + S+G+A + F + + A +A EMN
Sbjct: 100 VFIKNLDKSIDNKSLYECFSAFGKILSSKVMSD-DRGSKGYAFVHFQSQSAADRAIEEMN 158
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G + V FV ++ + K + V++KN + +D+E L+ F +G
Sbjct: 159 GKFLKDCKV---FVGRFKSRKDREAELRNKASEFTNVYIKNFGDDMDDERLREVFSTYGR 215
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPG 211
I+ VK++ + GKS+GFGF+ F S++AA KA+ EMNG+ + FV A+
Sbjct: 216 ILSVKVMTNSCGKSRGFGFVSFDSHEAARKAVEEMNGKEVNGQPIFVGRAQKKVERQAEL 275
Query: 212 KKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIG 267
K++F ++K ++ + K+++ NL NI++ + + F+ FG+I+ ++ + K G
Sbjct: 276 KQMFEQLKKERIRGCQGAKLYIKNLDENIDDEKLRKEFSSFGSISRVKVMQEEGQSKGFG 335
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299
I F + A A++ MNG + SKPL + L+
Sbjct: 336 LICFSSSEDAARAMTVMNGRILGSKPLNIALA 367
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 105/187 (56%), Gaps = 10/187 (5%)
Query: 29 NKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEA 88
NK + +++ N +D++ L F +G + V+V N +SRGF + F++ A
Sbjct: 184 NKASEFTNVYIKNFGDDMDDERLREVFSTYGRILSVKVMTNSCGKSRGFGFVSFDSHEAA 243
Query: 89 KKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKD--------KVFVKNLVE 140
+KA EMNG + +P+ + + K +R + +Q KK+ K+++KNL E
Sbjct: 244 RKAVEEMNGKEVNGQPIFVGRAQ-KKVERQAELKQMFEQLKKERIRGCQGAKLYIKNLDE 302
Query: 141 TVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNS 200
+D+E+L+ F FG+I VK++++E G+SKGFG I F S + A +A+ MNGR++
Sbjct: 303 NIDDEKLRKEFSSFGSISRVKVMQEE-GQSKGFGLICFSSSEDAARAMTVMNGRILGSKP 361
Query: 201 TFVSLAE 207
++LA+
Sbjct: 362 LNIALAQ 368
>gi|307207781|gb|EFN85399.1| Polyadenylate-binding protein 1 [Harpegnathos saltator]
Length = 552
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 95/300 (31%), Positives = 150/300 (50%), Gaps = 40/300 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L + L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHTDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I +P+ I + + P R VG VF+KNL + +D + +
Sbjct: 68 ALDTMNFDMIKGRPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKNIDNKAMYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVP 210
F FGNI+ K+ +DE+G SKG+GF+ F + +AA K+I ++NG ++ N V + + +P
Sbjct: 119 FSAFGNILSCKVAQDESGASKGYGFVHFETEEAANKSIDKVNGMLL--NGKKVYVGKFIP 176
Query: 211 GK----------KVFPKV---------KPPLLQPARKNK-----IFVANLPSNINNSEFE 246
K K+F V K L+ R N+ ++V NL I++
Sbjct: 177 RKEREKELGEKAKLFTNVYVKNFELKRKFEQLKIERLNRYQGVNLYVKNLDDTIDDERLR 236
Query: 247 ELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
+ F FGTITS+ ++ + K GF+ F P+ AT AV+ MNG + SKPL V L+ K
Sbjct: 237 KEFTPFGTITSAKVMMEEGRSKGFGFVCFSQPEEATKAVTEMNGRIVGSKPLYVALAQRK 296
>gi|452984370|gb|EME84127.1| hypothetical protein MYCFIDRAFT_202901 [Pseudocercospora fijiensis
CIRAD86]
Length = 715
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 88/266 (33%), Positives = 131/266 (49%), Gaps = 20/266 (7%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+PSV L F G + +RV R+ S G+A + +N+ A+ ++A E+
Sbjct: 57 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSAADGERALEEL 116
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI KP I + + P R G VF+KNL +D + L F FG
Sbjct: 117 NYTLIKGKPCRIMWSQRDPALRKTGQG---------NVFIKNLDAAIDNKALHDTFAAFG 167
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ DE+G SKG+GF+ + + AA +AI +NG ++ FV +P K
Sbjct: 168 NILSCKVAVDEHGNSKGYGFVHYETSDAANQAIKSVNGMLLNEKKVFV--GHHIPKKDRM 225
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIE 270
K + A I+V N+ + + EF ELF ++G ITS+SL D + GF+
Sbjct: 226 SKFEE---MKANFTNIYVKNIDAETTDDEFRELFEKYGQITSASLAHDDQGKVRGFGFVN 282
Query: 271 FIMPKHATHAVSTMNGHVFKSKPLKV 296
FI + A AV +N FK + L V
Sbjct: 283 FIRHEDAAKAVDELNDLDFKGQKLYV 308
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 69/268 (25%), Positives = 125/268 (46%), Gaps = 24/268 (8%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK W + D R + N + + NL+ ++DN+AL + F FG +
Sbjct: 122 KGKPCRIMWSQ---RDPALRKTGQGN-------VFIKNLDAAIDNKALHDTFAAFGNILS 171
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+VA +++ S+G+ + + T A +A +NG L+ K V + K + SK
Sbjct: 172 CKVAVDEHGNSKGYGFVHYETSDAANQAIKSVNGMLLNEKKVFVGHHIPKKDRMSKF--- 228
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
EE + ++VKN+ ++E + F K+G I + D+ GK +GFGF+ F ++
Sbjct: 229 EEMKANFTNIYVKNIDAETTDDEFRELFEKYGQITSASLAHDDQGKVRGFGFVNFIRHED 288
Query: 184 AEKAIIEMNGRMIQHNSTFVSLA--------EIVPGKKVFPKVKPPLLQPARKNKIFVAN 235
A KA+ E+N + +V A E+ +K + + + ++V N
Sbjct: 289 AAKAVDELNDLDFKGQKLYVGRAQKKHEREEEL---RKQYEAQRQEKSAKYQGVNLYVKN 345
Query: 236 LPSNINNSEFEELFARFGTITSSSLVSD 263
L I++ E ++F +G ITS+ ++ D
Sbjct: 346 LADEIDDEELRKIFEPYGAITSAKVMRD 373
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 90/230 (39%), Gaps = 59/230 (25%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
++V N++ + F+K+G + +A + + RGF + F +A KA E+N
Sbjct: 238 IYVKNIDAETTDDEFRELFEKYGQITSASLAHDDQGKVRGFGFVNFIRHEDAAKAVDELN 297
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQ-------YKKDKVFVKNLVETVDEEELKS 149
+ + + + K + + E Q Y+ ++VKNL + +D+EEL+
Sbjct: 298 DLDFKGQKLYVGRAQKKHEREEELRKQYEAQRQEKSAKYQGVNLYVKNLADEIDDEELRK 357
Query: 150 HFIKFGNIIEVKIVRDEN------------------------------------------ 167
F +G I K++RD
Sbjct: 358 IFEPYGAITSAKVMRDTTPLDKVEGAEKEDGEKKESESSAEDKEEEKKDDADELAKKLDT 417
Query: 168 ----------GKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
GKSKGFGF+ F + A KA+ E+N +MI +V+LA+
Sbjct: 418 VTIGGEKKVLGKSKGFGFVCFSNPDEATKAVTELNQKMIHSKPLYVALAQ 467
Score = 38.9 bits (89), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 28/46 (60%)
Query: 74 SRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSK 119
S+GF + F+ P EA KA E+N +I SKP+ + + K ++S+
Sbjct: 430 SKGFGFVCFSNPDEATKAVTELNQKMIHSKPLYVALAQRKEVRKSQ 475
>gi|398404546|ref|XP_003853739.1| hypothetical protein MYCGRDRAFT_56466 [Zymoseptoria tritici IPO323]
gi|339473622|gb|EGP88715.1| hypothetical protein MYCGRDRAFT_56466 [Zymoseptoria tritici IPO323]
Length = 763
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 87/267 (32%), Positives = 132/267 (49%), Gaps = 21/267 (7%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+PSV L F G + +RV R+ S G+A + +N + ++A E+
Sbjct: 55 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNVAGDGERALEEL 114
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI +P I + + P R G VF+KNL +D + L F FG
Sbjct: 115 NYTLIKGRPCRIMWSQRDPLLRKTGQG---------NVFIKNLDAAIDNKALHDTFAAFG 165
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ +DEN SKG+GF+ + + +AA +AI +NG ++ FV +P K
Sbjct: 166 NILSCKVAQDENANSKGYGFVHYETAEAANQAIKNVNGMLLNEKKVFV--GHHIPKKDRM 223
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFI 269
KV+ A I+V N+ S ++EF ELF ++G ITS+SL D + GF+
Sbjct: 224 SKVEE---MKANFTNIYVKNIDSETTDNEFRELFEKYGDITSASLAHDNESGKNRGFGFV 280
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKV 296
+I + A AV +N FK + L V
Sbjct: 281 NYIRHEDAYKAVEELNDSDFKGQKLYV 307
Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 64/234 (27%), Positives = 121/234 (51%), Gaps = 15/234 (6%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ ++DN+AL + F FG + +VA+++N S+G+ + + T A +A +NG
Sbjct: 145 IKNLDAAIDNKALHDTFAAFGNILSCKVAQDENANSKGYGFVHYETAEAANQAIKNVNGM 204
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ K V + K + SK EE + ++VKN+ + E + F K+G+I
Sbjct: 205 LLNEKKVFVGHHIPKKDRMSK---VEEMKANFTNIYVKNIDSETTDNEFRELFEKYGDIT 261
Query: 159 EVKIVRD-ENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPK 217
+ D E+GK++GFGF+ + ++ A KA+ E+N + +V A+ ++ +
Sbjct: 262 SASLAHDNESGKNRGFGFVNYIRHEDAYKAVEELNDSDFKGQKLYVGRAQKKHEREEELR 321
Query: 218 VKPPLLQPARKNK--------IFVANLPSNINNSEFEELFARFGTITSSSLVSD 263
+ + AR+ K ++V NL I++ E ++F +G ITS+ ++ D
Sbjct: 322 KQ---YEAARQEKSAKYTGVNLYVKNLADEIDDDELRKVFEPYGAITSAKVMRD 372
Score = 41.2 bits (95), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 27/40 (67%)
Query: 168 GKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
GKSKGFGF+ F + A KA+ E+N +M+ +V+LA+
Sbjct: 426 GKSKGFGFVCFSNPDEATKAVTELNQKMVHGKPLYVALAQ 465
>gi|328713207|ref|XP_001947071.2| PREDICTED: polyadenylate-binding protein 1-like [Acyrthosiphon
pisum]
Length = 630
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 90/275 (32%), Positives = 153/275 (55%), Gaps = 15/275 (5%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+DN+A+ + F FG + +VA+++ +S+G+ + F A ++ ++NG
Sbjct: 94 IKNLDRSIDNKAMYDTFSAFGNILSCKVAQDETGQSKGYGFVHFEMEQSATQSIEKVNGM 153
Query: 99 LIGSKPVII-TFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNI 157
L+ K V + FV K R K +G + K Y V++KN+ E V+++EL F K+G+I
Sbjct: 154 LLNGKKVFVGRFVGRK--DREKELGQKAKLYTN--VYIKNIDENVNDKELFEMFEKYGSI 209
Query: 158 IEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNST-FVSLAEIVPGKKVFP 216
K++ ++G S+GFGF+ F + AEKA+ E++G+ T +V A+ ++
Sbjct: 210 TSFKVMFRDDGSSRGFGFVAFEDPEEAEKAVTELHGKESPEGKTYYVGRAQKKAERQQEL 269
Query: 217 KVKPPLLQPARKNK-----IFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIG 267
K K + R N+ ++V NL I++ + F+ FGTITS+ ++ D K G
Sbjct: 270 KRKFEQYKIERMNRYQGVNLYVKNLDDTIDDERLRKEFSVFGTITSAKVMMDDGRSKGFG 329
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F+ F P+ AT AV+ MNG + +KPL V L+ K
Sbjct: 330 FVCFSSPEEATKAVTDMNGRIVGTKPLYVALAQRK 364
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 76/258 (29%), Positives = 132/258 (51%), Gaps = 24/258 (9%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L V L +F G + +RV R+ S G+A + F A+A++A M
Sbjct: 4 LYVGDLHSDVTEAMLFEKFSTVGAVLSIRVCRDMITRRSLGYAYVNFQNMADAERALDTM 63
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N ++ +P+ I + + P R VG VF+KNL ++D + + F FG
Sbjct: 64 NFDILKGRPMRIMWSQRDPSLRKSGVG---------NVFIKNLDRSIDNKAMYDTFSAFG 114
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ +DE G+SKG+GF+ F ++A ++I ++NG ++ FV G+ V
Sbjct: 115 NILSCKVAQDETGQSKGYGFVHFEMEQSATQSIEKVNGMLLNGKKVFV-------GRFVG 167
Query: 216 PKVKPPLLQPARK--NKIFVANLPSNINNSEFEELFARFGTITSSSLV-----SDKHIGF 268
K + L K +++ N+ N+N+ E E+F ++G+ITS ++ S + GF
Sbjct: 168 RKDREKELGQKAKLYTNVYIKNIDENVNDKELFEMFEKYGSITSFKVMFRDDGSSRGFGF 227
Query: 269 IEFIMPKHATHAVSTMNG 286
+ F P+ A AV+ ++G
Sbjct: 228 VAFEDPEEAEKAVTELHG 245
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L+V NL+ ++D++ L EF FGT+ +V + + S+GF + F++P EA KA
Sbjct: 284 YQGVNLYVKNLDDTIDDERLRKEFSVFGTITSAKVMMD-DGRSKGFGFVCFSSPEEATKA 342
Query: 92 RVEMNGHLIGSKPVIITFVELK 113
+MNG ++G+KP+ + + K
Sbjct: 343 VTDMNGRIVGTKPLYVALAQRK 364
>gi|148670144|gb|EDL02091.1| RIKEN cDNA 4932702K14 [Mus musculus]
Length = 642
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 94/287 (32%), Positives = 152/287 (52%), Gaps = 31/287 (10%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
V NL+ S+D++ L + F FG + +V ++N S+G+ + F T EA++A +MNG
Sbjct: 103 VKNLDRSIDSKTLYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEEAERAIEKMNGM 161
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
+ V + + + R +G K++ V++KNL E +D+E L+ F +FG +
Sbjct: 162 FLNDHKVFVGRFKSR-RDRQAELGARAKEFTN--VYIKNLGEDMDDERLQDLFGRFGPAL 218
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKV---- 214
VK++ DE+GKSKGFGF+ F ++ A KA+ EMNG+ + +V A+ KKV
Sbjct: 219 SVKVMTDESGKSKGFGFVSFERHEDARKAVEEMNGKDLNGKQIYVGRAQ----KKVERQT 274
Query: 215 -----FPKVKP--------PLLQPARKN--KIFVANLPSNINNSEFEELFARFGTITSSS 259
F ++K P + R ++V NL I++ + F+ FGTITS+
Sbjct: 275 ELKHKFGQMKQDKHKIERVPQDRSVRCKGVNLYVKNLDDGIDDERLRKEFSPFGTITSAK 334
Query: 260 LVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
+ + K GF+ F P+ AT AV+ MNG + +KPL V L+ K
Sbjct: 335 VTMEGGRSKGFGFVCFSSPEEATKAVTEMNGKIVATKPLYVALAQRK 381
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 87/279 (31%), Positives = 132/279 (47%), Gaps = 37/279 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F G + +RV R++ S G+A + F +A++
Sbjct: 8 YSLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRITRRSLGYASVNFQQLEDAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KPV I + + P R VG +FVKNL ++D + L
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVG---------NIFVKNLDRSIDSKTLYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+GF+ F + + AE+AI +MNG + + FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYGFVHFETQEEAERAIEKMNGMFLNDHKVFVGRFKSRR 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ NL ++++ ++LF RFG S +++
Sbjct: 178 DRQAELGARAKEF-------------TNVYIKNLGEDMDDERLQDLFGRFGPALSVKVMT 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
D K GF+ F + A AV MNG K + V
Sbjct: 225 DESGKSKGFGFVSFERHEDARKAVEEMNGKDLNGKQIYV 263
>gi|113461967|ref|NP_001038193.1| polyadenylate-binding protein 5 [Macaca mulatta]
gi|402910717|ref|XP_003918003.1| PREDICTED: polyadenylate-binding protein 5 [Papio anubis]
gi|50400917|sp|Q7JGR2.1|PABP5_MACMU RecName: Full=Polyadenylate-binding protein 5; Short=PABP-5;
Short=Poly(A)-binding protein 5
gi|14571725|emb|CAC42819.1| Poly(A)-binding protein cytoplasmic 5 [Macaca mulatta]
gi|14571737|emb|CAC42821.1| Poly(A)-binding protein cytoplasmic 5 [Miopithecus talapoin]
gi|90082100|dbj|BAE90331.1| unnamed protein product [Macaca fascicularis]
gi|355704969|gb|EHH30894.1| Polyadenylate-binding protein 5 [Macaca mulatta]
gi|355757521|gb|EHH61046.1| Polyadenylate-binding protein 5 [Macaca fascicularis]
Length = 382
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 90/285 (31%), Positives = 157/285 (55%), Gaps = 32/285 (11%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S+DN+AL F FG + +V + N S+G+A + F++ A A +A MN
Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMN 166
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G + ++ V + + P +R+ V ++ + VFVKN+ + +D+E+LK F ++G
Sbjct: 167 GVRLNNRQVYVGRFKF-PEERAAEVRTRDRATFTN-VFVKNIGDDIDDEKLKELFCEYGP 224
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF- 215
VK++RD +GKSKGFGF+++ +++AA+KA+++++G+ I +V A+ KK+
Sbjct: 225 TESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQ----KKIER 280
Query: 216 --------------PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLV 261
K +PP + I++ NL IN+ + +E F+ FG+I+ + ++
Sbjct: 281 LAELRRRFERLRLKEKSRPPGVP------IYIKNLDETINDEKLKEEFSSFGSISRAKVM 334
Query: 262 SD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
+ K G + F + AT AV MNG V SKPL VTL +
Sbjct: 335 MEVGQGKGFGVVCFSSFEEATKAVDEMNGRVVGSKPLHVTLGQAR 379
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 80/267 (29%), Positives = 128/267 (47%), Gaps = 26/267 (9%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDES-RGFAIIVFNTPAEAKKARVEMNG 97
V +L+P V L +F+ G LR R+ R+ S G+ + F PA+A+ A MN
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 98 HLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNI 157
LI KP + + + R VG +F+KNL +++D L F FGNI
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVG---------NIFIKNLDKSIDNRALFYLFSAFGNI 132
Query: 158 IEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPK 217
+ K+V D+NG SKG+ ++ F S AA +AI MNG + + +V G+ FP+
Sbjct: 133 LSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYV-------GRFKFPE 184
Query: 218 VKPPLLQP---ARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFI 269
+ ++ A +FV N+ +I++ + +ELF +G S ++ D K GF+
Sbjct: 185 ERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFV 244
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKV 296
+ + A AV ++G K L V
Sbjct: 245 RYETHEAAQKAVLDLHGKSIDGKVLYV 271
>gi|255652857|ref|NP_001157308.1| poly(A) binding protein, cytoplasmic 3 [Mus musculus]
gi|12855391|dbj|BAB30319.1| unnamed protein product [Mus musculus]
gi|26325704|dbj|BAC26606.1| unnamed protein product [Mus musculus]
Length = 643
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 94/287 (32%), Positives = 152/287 (52%), Gaps = 31/287 (10%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
V NL+ S+D++ L + F FG + +V ++N S+G+ + F T EA++A +MNG
Sbjct: 103 VKNLDRSIDSKTLYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEEAERAIEKMNGM 161
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
+ V + + + R +G K++ V++KNL E +D+E L+ F +FG +
Sbjct: 162 FLNDHKVFVGRFKSR-RDRQAELGARAKEFTN--VYIKNLGEDMDDERLQDLFGRFGPAL 218
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKV---- 214
VK++ DE+GKSKGFGF+ F ++ A KA+ EMNG+ + +V A+ KKV
Sbjct: 219 SVKVMTDESGKSKGFGFVSFERHEDARKAVEEMNGKDLNGKQIYVGRAQ----KKVERQT 274
Query: 215 -----FPKVKP--------PLLQPARKN--KIFVANLPSNINNSEFEELFARFGTITSSS 259
F ++K P + R ++V NL I++ + F+ FGTITS+
Sbjct: 275 ELKHKFGQMKQDKHKIERVPQDRSVRCKGVNLYVKNLDDGIDDERLRKEFSPFGTITSAK 334
Query: 260 LVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
+ + K GF+ F P+ AT AV+ MNG + +KPL V L+ K
Sbjct: 335 VTMEGGRSKGFGFVCFSSPEEATKAVTEMNGKIVATKPLYVALAQRK 381
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 87/279 (31%), Positives = 132/279 (47%), Gaps = 37/279 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F G + +RV R++ S G+A + F +A++
Sbjct: 8 YSLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRITRRSLGYASVNFQQLEDAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KPV I + + P R VG +FVKNL ++D + L
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVG---------NIFVKNLDRSIDSKTLYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVS------ 204
F FGNI+ K+V DENG SKG+GF+ F + + AE+AI +MNG + + FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYGFVHFETQEEAERAIEKMNGMFLNDHKVFVGRFKSRR 177
Query: 205 --LAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ NL ++++ ++LF RFG S +++
Sbjct: 178 DRQAELGARAKEF-------------TNVYIKNLGEDMDDERLQDLFGRFGPALSVKVMT 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
D K GF+ F + A AV MNG K + V
Sbjct: 225 DESGKSKGFGFVSFERHEDARKAVEEMNGKDLNGKQIYV 263
>gi|296235923|ref|XP_002763106.1| PREDICTED: polyadenylate-binding protein 5 [Callithrix jacchus]
gi|14571652|emb|CAC42812.1| Poly(A)-binding protein cytoplasmic 5 [Callithrix jacchus]
Length = 382
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 89/285 (31%), Positives = 157/285 (55%), Gaps = 32/285 (11%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S+DN+AL F FG + +V + N S+G+A + F++ A A +A MN
Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMN 166
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G + ++ V + + P +R+ V ++ + VFVKN+ E +D+E+LK F ++G
Sbjct: 167 GVRLNNRQVYVGRFKF-PEERAAEVRTRDRATFTN-VFVKNIGEDIDDEKLKELFCEYGP 224
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF- 215
VK++RD +GKSKGFGF+++ +++AA+KA+++++G+ + +V A+ KK+
Sbjct: 225 TESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSVDGKVLYVGRAQ----KKIER 280
Query: 216 --------------PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLV 261
K +PP + I++ NL IN+ + +E F+ FG+I+ + ++
Sbjct: 281 LAELRRRFERLRLKEKSRPPGVP------IYIKNLDETINDEKLKEEFSSFGSISRAKVM 334
Query: 262 SD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
+ K G + F + AT AV MNG + SKPL VTL +
Sbjct: 335 MEVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQAR 379
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 80/267 (29%), Positives = 128/267 (47%), Gaps = 26/267 (9%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDES-RGFAIIVFNTPAEAKKARVEMNG 97
V +L+P V L +F+ G LR R+ R+ S G+ + F PA+A+ A MN
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 98 HLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNI 157
LI KP + + + R VG +F+KNL +++D L F FGNI
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVG---------NIFIKNLDKSIDNRALFYLFSAFGNI 132
Query: 158 IEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPK 217
+ K+V D+NG SKG+ ++ F S AA +AI MNG + + +V G+ FP+
Sbjct: 133 LSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYV-------GRFKFPE 184
Query: 218 VKPPLLQP---ARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFI 269
+ ++ A +FV N+ +I++ + +ELF +G S ++ D K GF+
Sbjct: 185 ERAAEVRTRDRATFTNVFVKNIGEDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFV 244
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKV 296
+ + A AV ++G K L V
Sbjct: 245 RYETHEAAQKAVLDLHGKSVDGKVLYV 271
>gi|50306049|ref|XP_452986.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|74690315|sp|Q6CSV3.1|PABP_KLULA RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|49642119|emb|CAH01837.1| KLLA0C17600p [Kluyveromyces lactis]
Length = 592
Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 90/277 (32%), Positives = 147/277 (53%), Gaps = 15/277 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL P++DN+AL F FG + +VA ++N SRGF + F ++AK A +N
Sbjct: 140 IFIKNLHPAIDNKALHETFSTFGEVLSCKVALDENGNSRGFGFVHFKEESDAKDAIEAVN 199
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNL-VETVDEEELKSHFIKFG 155
G L+ V + K + SK EE + ++VKN+ VET DEE + F ++G
Sbjct: 200 GMLMNGLEVYVAMHVPKKDRISKL---EEAKANFTNIYVKNIDVETTDEE-FEQLFSQYG 255
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVP 210
I+ + +D GK KGFGF+ F + AA KA+ E+NG+ + + +V A+
Sbjct: 256 EIVSAALEKDAEGKPKGFGFVNFVDHNAAAKAVEELNGKEFKSQALYVGRAQKKYERAEE 315
Query: 211 GKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KH 265
KK + + + L + +F+ NL +I++ + +E FA +GTITS+ ++ D K
Sbjct: 316 LKKQYEQYRLEKLAKFQGVNLFIKNLDDSIDDEKLKEEFAPYGTITSARVMRDQEGNSKG 375
Query: 266 IGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ F P+ AT A++ N + KPL V ++ K
Sbjct: 376 FGFVCFSSPEEATKAMTEKNQQIVAGKPLYVAIAQRK 412
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 88/268 (32%), Positives = 131/268 (48%), Gaps = 24/268 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+P++ L + F G + +RV R+ S G+A + + KKA E+
Sbjct: 52 LYVGELDPNITEALLYDVFSPLGPISSIRVCRDAVTKASLGYAYVNYTDYEAGKKAIQEL 111
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N I +P I + E P R K G +F+KNL +D + L F FG
Sbjct: 112 NYAEINGRPCRIMWSERDPAIRKKGSG---------NIFIKNLHPAIDNKALHETFSTFG 162
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
++ K+ DENG S+GFGF+ F A+ AI +NG ++ N V +A VP K
Sbjct: 163 EVLSCKVALDENGNSRGFGFVHFKEESDAKDAIEAVNGMLM--NGLEVYVAMHVPKKDRI 220
Query: 216 PKVKPPLLQPARKN--KIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGF 268
K L+ A+ N I+V N+ + EFE+LF+++G I S++L D K GF
Sbjct: 221 SK-----LEEAKANFTNIYVKNIDVETTDEEFEQLFSQYGEIVSAALEKDAEGKPKGFGF 275
Query: 269 IEFIMPKHATHAVSTMNGHVFKSKPLKV 296
+ F+ A AV +NG FKS+ L V
Sbjct: 276 VNFVDHNAAAKAVEELNGKEFKSQALYV 303
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 49/83 (59%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L + NL+ S+D++ L EF +GT+ RV R++ S+GF + F++P EA KA E N
Sbjct: 336 LFIKNLDDSIDDEKLKEEFAPYGTITSARVMRDQEGNSKGFGFVCFSSPEEATKAMTEKN 395
Query: 97 GHLIGSKPVIITFVELKPGQRSK 119
++ KP+ + + K +RS+
Sbjct: 396 QQIVAGKPLYVAIAQRKDVRRSQ 418
>gi|340517112|gb|EGR47358.1| polyadenylate-binding protein [Trichoderma reesei QM6a]
Length = 745
Score = 137 bits (345), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 85/269 (31%), Positives = 136/269 (50%), Gaps = 26/269 (9%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+PSV L F + G + +RV R+ S G+A + +N+ + +KA E+
Sbjct: 61 LYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTPDGEKALEEL 120
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI +P I + + P R G VF+KNL +D + L F FG
Sbjct: 121 NYTLIKGRPCRIMWSQRDPALRKTGQG---------NVFIKNLDVAIDNKALHDTFAAFG 171
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKV- 214
NI+ K+ +DENG SKG+GF+ + + +AA +AI +NG ++ +V +P K
Sbjct: 172 NILSCKVAQDENGNSKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGYH--IPKKDRQ 229
Query: 215 --FPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKH-----IG 267
F ++K A ++V N+ ++ + +F +LF +FG +TSSSL D+ G
Sbjct: 230 SKFEEMK------ANFTNVYVKNIAPDVTDEDFRQLFEKFGDVTSSSLARDQEGKTRGFG 283
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
F+ F + A AV +NG F+ + L V
Sbjct: 284 FVNFTTHEAAFKAVEELNGKDFRGQDLYV 312
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 91/351 (25%), Positives = 163/351 (46%), Gaps = 65/351 (18%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KG+ W + D R + N + + NL+ ++DN+AL + F FG +
Sbjct: 126 KGRPCRIMWSQ---RDPALRKTGQGN-------VFIKNLDVAIDNKALHDTFAAFGNILS 175
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+VA+++N S+G+ + + T A +A +NG L+ K V + + K ++SK
Sbjct: 176 CKVAQDENGNSKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGYHIPKKDRQSKF--- 232
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
EE + V+VKN+ V +E+ + F KFG++ + RD+ GK++GFGF+ F +++A
Sbjct: 233 EEMKANFTNVYVKNIAPDVTDEDFRQLFEKFGDVTSSSLARDQEGKTRGFGFVNFTTHEA 292
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAEIVPGK--KVFPKVKPPLLQPARKNK---IFVANLPS 238
A KA+ E+NG+ + +V A+ + ++ + L+ A K + +++ NL
Sbjct: 293 AFKAVEELNGKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLDD 352
Query: 239 NINNSEFEELFARFGTITSSSLVSD----------------------------------- 263
++++ + ++FA FG ITS+ ++ D
Sbjct: 353 DVDDEKLRQMFAEFGPITSAKVMRDVPQEGEEEAKDQEKDKENQKEGEKEGESAEGAEKK 412
Query: 264 ------------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
K GF+ F P AT AV+ MN + +KPL V L+ K
Sbjct: 413 TEKKSDKKLGKSKGFGFVCFSNPDDATKAVAEMNQRMINNKPLYVALAQRK 463
Score = 44.3 bits (103), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 58/142 (40%), Gaps = 44/142 (30%)
Query: 20 EGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARN---------K 70
E AR K N Y+ L++ NL+ VD++ L F +FG + +V R+ K
Sbjct: 330 EAARLEKANK--YQGVNLYIKNLDDDVDDEKLRQMFAEFGPITSAKVMRDVPQEGEEEAK 387
Query: 71 NDE---------------------------------SRGFAIIVFNTPAEAKKARVEMNG 97
+ E S+GF + F+ P +A KA EMN
Sbjct: 388 DQEKDKENQKEGEKEGESAEGAEKKTEKKSDKKLGKSKGFGFVCFSNPDDATKAVAEMNQ 447
Query: 98 HLIGSKPVIITFVELKPGQRSK 119
+I +KP+ + + K ++S+
Sbjct: 448 RMINNKPLYVALAQRKDVRKSQ 469
>gi|194880963|ref|XP_001974622.1| GG21846 [Drosophila erecta]
gi|190657809|gb|EDV55022.1| GG21846 [Drosophila erecta]
Length = 635
Score = 137 bits (345), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 92/276 (33%), Positives = 149/276 (53%), Gaps = 16/276 (5%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ ++DN+A+ + F FG + +VA ++ S+G+ + F T A + ++NG
Sbjct: 94 IKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGNSKGYGFVHFETEEAANTSIDKVNGM 153
Query: 99 LIGSKPVII-TFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNI 157
L+ K V + F+ K +R K +G + K + V+VKN E D+E+LK F +G I
Sbjct: 154 LLNGKKVYVGKFIPRK--EREKELGEKAKLFTN--VYVKNFTEDFDDEKLKEFFEPYGKI 209
Query: 158 IEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGR-MIQHNSTFVSLAEIVPGKKVFP 216
K++ E+GKSKGFGF+ F + +AAE A+ +NG+ M + S +V+ A+ ++
Sbjct: 210 TSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQQEL 269
Query: 217 KVKPPLLQPARKNKIF-----VANLPSNINNSEFEELFARFGTITSSSLVSD-----KHI 266
K K L+ R +F V NL I++ F+ +G ITS+ +++D K
Sbjct: 270 KRKFEELKQKRHESVFGVNLYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDEEGRSKGF 329
Query: 267 GFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ F AT AV+ +NG V SKPL V L+ K
Sbjct: 330 GFVCFNAASEATCAVTELNGRVVGSKPLYVALAQRK 365
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 78/258 (30%), Positives = 129/258 (50%), Gaps = 24/258 (9%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L V+ L +F G + +RV R+ S G+A + F PA+A++A M
Sbjct: 4 LYVGDLPQDVNESGLFEKFSTAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTM 63
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N L+ +KP+ I + + P R VG VF+KNL +D + + F FG
Sbjct: 64 NFDLLRNKPIRIMWSQRDPSLRRSGVG---------NVFIKNLDRAIDNKAIYDTFSAFG 114
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ DE G SKG+GF+ F + +AA +I ++NG ++ N V + + +P K+
Sbjct: 115 NILSCKVATDEKGNSKGYGFVHFETEEAANTSIDKVNGMLL--NGKKVYVGKFIPRKERE 172
Query: 216 PKV--KPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS-----DKHIGF 268
++ K L ++V N + ++ + +E F +G ITS ++S K GF
Sbjct: 173 KELGEKAKLF-----TNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGF 227
Query: 269 IEFIMPKHATHAVSTMNG 286
+ F + A AV +NG
Sbjct: 228 VAFETTEAAEAAVQALNG 245
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 95/179 (53%), Gaps = 8/179 (4%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
++V N D++ L F+ +G + +V ++ +S+GF + F T A+ A +N
Sbjct: 185 VYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALN 244
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVG---PEEKQYKKDKVF-----VKNLVETVDEEELK 148
G +G + K +R + + E KQ + + VF VKNL +T+D++ L+
Sbjct: 245 GKDMGEGKSLYVARAQKKAERQQELKRKFEELKQKRHESVFGVNLYVKNLDDTIDDDRLR 304
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
F +GNI K++ DE G+SKGFGF+ F + A A+ E+NGR++ +V+LA+
Sbjct: 305 IAFSPYGNITSAKVMTDEEGRSKGFGFVCFNAASEATCAVTELNGRVVGSKPLYVALAQ 363
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 44/77 (57%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L+V NL+ ++D+ L F +G + +V ++ S+GF + FN +EA A E+N
Sbjct: 289 LYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDEEGRSKGFGFVCFNAASEATCAVTELN 348
Query: 97 GHLIGSKPVIITFVELK 113
G ++GSKP+ + + K
Sbjct: 349 GRVVGSKPLYVALAQRK 365
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 42/81 (51%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGF--IEFIMPKHATHAVSTM 284
++V +LP ++N S E F+ G + S + D + +G+ + F P A A+ TM
Sbjct: 4 LYVGDLPQDVNESGLFEKFSTAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTM 63
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N + ++KP+++ S P +
Sbjct: 64 NFDLLRNKPIRIMWSQRDPSL 84
>gi|432118841|gb|ELK38215.1| Polyadenylate-binding protein 5 [Myotis davidii]
Length = 382
Score = 137 bits (345), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 87/281 (30%), Positives = 158/281 (56%), Gaps = 24/281 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S+DN+AL F FG + +V + N S+G+A + F++ A A +A MN
Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMN 166
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G + ++ V + + P +R+ V ++ + VFVKN + VD+E+LK F ++G
Sbjct: 167 GVRLNNRQVYVGRFKF-PEERAAEVRTRDRATFTN-VFVKNFGDEVDDEKLKEIFSEYGP 224
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPG 211
VK++RD +GKSKGFGF+++ +++AA+KA+++++G+ I + +V A+ +
Sbjct: 225 TESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKALYVGRAQKKIERLAEL 284
Query: 212 KKVFPKVK------PPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-- 263
++ F ++K PP + +++ NL I++ + E F+ FG+I+ + ++ +
Sbjct: 285 RRRFERLKVKEKSRPPGVP------VYIKNLDETIDDEKLREEFSSFGSISRAKVMVEVG 338
Query: 264 --KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
K G + F + AT AV MNG + SKPL VTL +
Sbjct: 339 QGKGFGVVCFSSFEEATKAVGEMNGRMVGSKPLHVTLGQAR 379
Score = 110 bits (275), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 78/267 (29%), Positives = 127/267 (47%), Gaps = 26/267 (9%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDES-RGFAIIVFNTPAEAKKARVEMNG 97
V +L+P V L +F+ G LR R+ R+ S G+ + F PA+A+ A MN
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPETRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 98 HLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNI 157
LI KP + + + R VG +F+KNL +++D L F FGNI
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVG---------NIFIKNLDKSIDNRALFYLFSAFGNI 132
Query: 158 IEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPK 217
+ K+V D+NG SKG+ ++ F S AA +AI MNG + + +V G+ FP+
Sbjct: 133 LSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYV-------GRFKFPE 184
Query: 218 VKPPLLQP---ARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFI 269
+ ++ A +FV N +++ + +E+F+ +G S ++ D K GF+
Sbjct: 185 ERAAEVRTRDRATFTNVFVKNFGDEVDDEKLKEIFSEYGPTESVKVIRDASGKSKGFGFV 244
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKV 296
+ + A AV ++G K L V
Sbjct: 245 RYETHEAAQKAVLDLHGKSIDGKALYV 271
>gi|255538240|ref|XP_002510185.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223550886|gb|EEF52372.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 658
Score = 137 bits (345), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 87/276 (31%), Positives = 148/276 (53%), Gaps = 16/276 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ ++D++AL + F FG + +VA + + +SRG+ + F+ A+ A ++N
Sbjct: 127 IFIKNLDKTIDHKALHDTFSSFGNILSCKVATDSSGQSRGYGFVQFDNEEAAQNAIDKLN 186
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G L+ K V + L+ +R K + V+VKNL E+ EE+LK+ F ++G
Sbjct: 187 GMLLNDKQVYVGHF-LRKHERDS-----ASNKKFNNVYVKNLSESTTEEDLKNIFGEYGE 240
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEI-----VPG 211
I I+RD +GKSK FGF+ F + AA KA+ +NG+ I +V A+ +
Sbjct: 241 ITSAVIMRDADGKSKCFGFVNFENTDAAAKAVESLNGKKIDDKEWYVGKAQKKSERELEL 300
Query: 212 KKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHI 266
K F + + + +++ NL +I++ +ELF+ FG ITS ++ D +
Sbjct: 301 KSQFEQSMKEAVDKYQGVNLYIKNLDDSISDENLKELFSDFGMITSCKVMRDPSGISRGS 360
Query: 267 GFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ F P+ A+ A++ MNG + SKPL V L+ K
Sbjct: 361 GFVAFSTPEEASRALAEMNGKMVVSKPLYVALAQRK 396
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 72/261 (27%), Positives = 126/261 (48%), Gaps = 23/261 (8%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKK 90
Y L+V +L+ +V + L + F + G + VRV R+ S G+ + + +P +A +
Sbjct: 34 YMPTSLYVGDLDLNVTDSQLYDVFNQVGQVVSVRVCRDLTTRRSLGYGYVNYTSPQDAAR 93
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A +N +KP+ I + P R G +F+KNL +T+D + L
Sbjct: 94 ALDILNFTPFNNKPIRIMYSHRDPSIRKSGTG---------NIFIKNLDKTIDHKALHDT 144
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVP 210
F FGNI+ K+ D +G+S+G+GF+QF + +AA+ AI ++NG ++ +V
Sbjct: 145 FSSFGNILSCKVATDSSGQSRGYGFVQFDNEEAAQNAIDKLNGMLLNDKQVYVG------ 198
Query: 211 GKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KH 265
K + + N ++V NL + + + +F +G ITS+ ++ D K
Sbjct: 199 --HFLRKHERDSASNKKFNNVYVKNLSESTTEEDLKNIFGEYGEITSAVIMRDADGKSKC 256
Query: 266 IGFIEFIMPKHATHAVSTMNG 286
GF+ F A AV ++NG
Sbjct: 257 FGFVNFENTDAAAKAVESLNG 277
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 55/97 (56%)
Query: 23 RSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVF 82
+S KE Y+ L++ NL+ S+ ++ L F FG + +V R+ + SRG + F
Sbjct: 306 QSMKEAVDKYQGVNLYIKNLDDSISDENLKELFSDFGMITSCKVMRDPSGISRGSGFVAF 365
Query: 83 NTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSK 119
+TP EA +A EMNG ++ SKP+ + + K +R++
Sbjct: 366 STPEEASRALAEMNGKMVVSKPLYVALAQRKEERRAR 402
Score = 41.6 bits (96), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 19/87 (21%), Positives = 41/87 (47%), Gaps = 6/87 (6%)
Query: 225 PARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKHI------GFIEFIMPKHAT 278
P ++V +L N+ +S+ ++F + G + S + D G++ + P+ A
Sbjct: 33 PYMPTSLYVGDLDLNVTDSQLYDVFNQVGQVVSVRVCRDLTTRRSLGYGYVNYTSPQDAA 92
Query: 279 HAVSTMNGHVFKSKPLKVTLSGTKPGV 305
A+ +N F +KP+++ S P +
Sbjct: 93 RALDILNFTPFNNKPIRIMYSHRDPSI 119
>gi|6102944|emb|CAB59276.1| hypothetical protein [Homo sapiens]
Length = 367
Score = 137 bits (345), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 86/275 (31%), Positives = 157/275 (57%), Gaps = 12/275 (4%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S+DN+AL F FG + +V + N S+G+A + F++ A A +A MN
Sbjct: 93 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMN 151
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G + ++ V + + P +R+ V ++ + VFVKN+ + +D+E+LK F ++G
Sbjct: 152 GVRLNNRQVYVGRFKF-PEERAAEVRTRDRATFTN-VFVKNIGDDIDDEKLKELFCEYGP 209
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFP 216
VK++RD +GKSKGFGF+++ +++AA+KA+++++G+ I +V A+ +
Sbjct: 210 TESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAEL 269
Query: 217 KVKPPLLQPARKNK-----IFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIG 267
+ + L+ K++ I++ NL IN+ + +E F+ FG+I+ + ++ + K G
Sbjct: 270 RRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGKGFG 329
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
+ F + AT AV MNG + SKPL VTL +
Sbjct: 330 VVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQAR 364
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 81/269 (30%), Positives = 130/269 (48%), Gaps = 26/269 (9%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDES-RGFAIIVFNTPAEAKKARVEM 95
L+V +L+P V L +F+ G LR R+ R+ S G+ + F PA+A+ A M
Sbjct: 5 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 64
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI KP + + + R VG +F+KNL +++D L F FG
Sbjct: 65 NFDLINGKPFRLMWSQPDDRLRKSGVG---------NIFIKNLDKSIDNRALFYLFSAFG 115
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+V D+NG SKG+ ++ F S AA +AI MNG + + +V G+ F
Sbjct: 116 NILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYV-------GRFKF 167
Query: 216 PKVKPPLLQP---ARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIG 267
P+ + ++ A +FV N+ +I++ + +ELF +G S ++ D K G
Sbjct: 168 PEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFG 227
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
F+ + + A AV ++G K L V
Sbjct: 228 FVRYETHEAAQKAVLDLHGKSIDGKVLYV 256
>gi|18201888|ref|NP_543022.1| polyadenylate-binding protein 5 [Homo sapiens]
gi|115392093|ref|NP_001065269.1| polyadenylate-binding protein 5 [Pan troglodytes]
gi|332239776|ref|XP_003269075.1| PREDICTED: polyadenylate-binding protein 5 [Nomascus leucogenys]
gi|426396593|ref|XP_004064521.1| PREDICTED: polyadenylate-binding protein 5-like [Gorilla gorilla
gorilla]
gi|28201851|sp|Q96DU9.1|PABP5_HUMAN RecName: Full=Polyadenylate-binding protein 5; Short=PABP-5;
Short=Poly(A)-binding protein 5
gi|38502886|sp|P60047.1|PABP5_GORGO RecName: Full=Polyadenylate-binding protein 5; Short=PABP-5;
Short=Poly(A)-binding protein 5
gi|38502887|sp|P60048.1|PABP5_HYLLA RecName: Full=Polyadenylate-binding protein 5; Short=PABP-5;
Short=Poly(A)-binding protein 5
gi|38502888|sp|P60049.1|PABP5_PANTR RecName: Full=Polyadenylate-binding protein 5; Short=PABP-5;
Short=Poly(A)-binding protein 5
gi|38502889|sp|P60050.1|PABP5_PONPY RecName: Full=Polyadenylate-binding protein 5; Short=PABP-5;
Short=Poly(A)-binding protein 5
gi|14571705|emb|CAC42817.1| Poly(A)-binding protein cytoplasmic 5 [Gorilla gorilla]
gi|14571711|emb|CAC42818.1| Poly(A)-binding protein cytoplasmic 5 [Hylobates lar]
gi|14571756|emb|CAC42822.1| Poly(A)-binding protein cytoplasmic 5 [Pongo pygmaeus]
gi|14571764|emb|CAC42823.1| poly(A)-binding protein cytoplasmic 5 [Pan troglodytes]
gi|14572616|emb|CAC42826.1| Poly(A)-binding protein cytoplasmic 5 [Homo sapiens]
gi|38649270|gb|AAH63113.1| Poly(A) binding protein, cytoplasmic 5 [Homo sapiens]
gi|119623181|gb|EAX02776.1| poly(A) binding protein, cytoplasmic 5 [Homo sapiens]
gi|158261233|dbj|BAF82794.1| unnamed protein product [Homo sapiens]
gi|208968659|dbj|BAG74168.1| poly(A) binding protein, cytoplasmic 5 [synthetic construct]
gi|312151110|gb|ADQ32067.1| poly(A) binding protein, cytoplasmic 5 [synthetic construct]
gi|410208314|gb|JAA01376.1| poly(A) binding protein, cytoplasmic 5 [Pan troglodytes]
gi|410305648|gb|JAA31424.1| poly(A) binding protein, cytoplasmic 5 [Pan troglodytes]
Length = 382
Score = 137 bits (345), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 89/285 (31%), Positives = 157/285 (55%), Gaps = 32/285 (11%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S+DN+AL F FG + +V + N S+G+A + F++ A A +A MN
Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMN 166
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G + ++ V + + P +R+ V ++ + VFVKN+ + +D+E+LK F ++G
Sbjct: 167 GVRLNNRQVYVGRFKF-PEERAAEVRTRDRATFTN-VFVKNIGDDIDDEKLKELFCEYGP 224
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF- 215
VK++RD +GKSKGFGF+++ +++AA+KA+++++G+ I +V A+ KK+
Sbjct: 225 TESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQ----KKIER 280
Query: 216 --------------PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLV 261
K +PP + I++ NL IN+ + +E F+ FG+I+ + ++
Sbjct: 281 LAELRRRFERLRLKEKSRPPGVP------IYIKNLDETINDEKLKEEFSSFGSISRAKVM 334
Query: 262 SD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
+ K G + F + AT AV MNG + SKPL VTL +
Sbjct: 335 MEVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQAR 379
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 80/267 (29%), Positives = 128/267 (47%), Gaps = 26/267 (9%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDES-RGFAIIVFNTPAEAKKARVEMNG 97
V +L+P V L +F+ G LR R+ R+ S G+ + F PA+A+ A MN
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 98 HLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNI 157
LI KP + + + R VG +F+KNL +++D L F FGNI
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVG---------NIFIKNLDKSIDNRALFYLFSAFGNI 132
Query: 158 IEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPK 217
+ K+V D+NG SKG+ ++ F S AA +AI MNG + + +V G+ FP+
Sbjct: 133 LSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYV-------GRFKFPE 184
Query: 218 VKPPLLQP---ARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFI 269
+ ++ A +FV N+ +I++ + +ELF +G S ++ D K GF+
Sbjct: 185 ERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFV 244
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKV 296
+ + A AV ++G K L V
Sbjct: 245 RYETHEAAQKAVLDLHGKSIDGKVLYV 271
>gi|17136378|ref|NP_476667.1| polyA-binding protein, isoform A [Drosophila melanogaster]
gi|24654793|ref|NP_725749.1| polyA-binding protein, isoform B [Drosophila melanogaster]
gi|24654797|ref|NP_725750.1| polyA-binding protein, isoform C [Drosophila melanogaster]
gi|195335482|ref|XP_002034394.1| GM21847 [Drosophila sechellia]
gi|76803808|sp|P21187.3|PABP_DROME RecName: Full=Polyadenylate-binding protein; Short=PABP;
Short=Poly(A)-binding protein
gi|7302665|gb|AAF57745.1| polyA-binding protein, isoform B [Drosophila melanogaster]
gi|7302666|gb|AAF57746.1| polyA-binding protein, isoform C [Drosophila melanogaster]
gi|21428474|gb|AAM49897.1| LD24412p [Drosophila melanogaster]
gi|21626472|gb|AAM68175.1| polyA-binding protein, isoform A [Drosophila melanogaster]
gi|194126364|gb|EDW48407.1| GM21847 [Drosophila sechellia]
gi|220946756|gb|ACL85921.1| pAbp-PA [synthetic construct]
Length = 634
Score = 137 bits (345), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 92/276 (33%), Positives = 149/276 (53%), Gaps = 16/276 (5%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ ++DN+A+ + F FG + +VA ++ S+G+ + F T A + ++NG
Sbjct: 94 IKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGNSKGYGFVHFETEEAANTSIDKVNGM 153
Query: 99 LIGSKPVII-TFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNI 157
L+ K V + F+ K +R K +G + K + V+VKN E D+E+LK F +G I
Sbjct: 154 LLNGKKVYVGKFIPRK--EREKELGEKAKLFTN--VYVKNFTEDFDDEKLKEFFEPYGKI 209
Query: 158 IEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGR-MIQHNSTFVSLAEIVPGKKVFP 216
K++ E+GKSKGFGF+ F + +AAE A+ +NG+ M + S +V+ A+ ++
Sbjct: 210 TSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQQEL 269
Query: 217 KVKPPLLQPARKNKIF-----VANLPSNINNSEFEELFARFGTITSSSLVSD-----KHI 266
K K L+ R +F V NL I++ F+ +G ITS+ +++D K
Sbjct: 270 KRKFEELKQKRHESVFGVNLYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDEEGRSKGF 329
Query: 267 GFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ F AT AV+ +NG V SKPL V L+ K
Sbjct: 330 GFVCFNAASEATCAVTELNGRVVGSKPLYVALAQRK 365
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 78/258 (30%), Positives = 130/258 (50%), Gaps = 24/258 (9%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L V+ L ++F G + +RV R+ S G+A + F PA+A++A M
Sbjct: 4 LYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTM 63
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N L+ +KP+ I + + P R VG VF+KNL +D + + F FG
Sbjct: 64 NFDLVRNKPIRIMWSQRDPSLRRSGVG---------NVFIKNLDRAIDNKAIYDTFSAFG 114
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ DE G SKG+GF+ F + +AA +I ++NG ++ N V + + +P K+
Sbjct: 115 NILSCKVATDEKGNSKGYGFVHFETEEAANTSIDKVNGMLL--NGKKVYVGKFIPRKERE 172
Query: 216 PKV--KPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS-----DKHIGF 268
++ K L ++V N + ++ + +E F +G ITS ++S K GF
Sbjct: 173 KELGEKAKLF-----TNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGF 227
Query: 269 IEFIMPKHATHAVSTMNG 286
+ F + A AV +NG
Sbjct: 228 VAFETTEAAEAAVQALNG 245
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/224 (28%), Positives = 108/224 (48%), Gaps = 21/224 (9%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
++V N D++ L F+ +G + +V ++ +S+GF + F T A+ A +N
Sbjct: 185 VYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALN 244
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVG---PEEKQYKKDKVF-----VKNLVETVDEEELK 148
G +G + K +R + + E KQ + + VF VKNL +T+D++ L+
Sbjct: 245 GKDMGEGKSLYVARAQKKAERQQELKRKFEELKQKRHESVFGVNLYVKNLDDTIDDDRLR 304
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEI 208
F +GNI K++ DE G+SKGFGF+ F + A A+ E+NGR++ +V+LA+
Sbjct: 305 IAFSPYGNITSAKVMTDEEGRSKGFGFVCFNAASEATCAVTELNGRVVGSKPLYVALAQR 364
Query: 209 VPGKKVFPKVK-------------PPLLQPARKNKIFVANLPSN 239
+K + + QP + FV LPSN
Sbjct: 365 KEERKAHLASQYMRHMTGMRMQQLGQIYQPNAASGFFVPTLPSN 408
Score = 42.4 bits (98), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 42/81 (51%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGF--IEFIMPKHATHAVSTM 284
++V +LP ++N S + F+ G + S + D + +G+ + F P A A+ TM
Sbjct: 4 LYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTM 63
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N + ++KP+++ S P +
Sbjct: 64 NFDLVRNKPIRIMWSQRDPSL 84
>gi|194386842|dbj|BAG59787.1| unnamed protein product [Homo sapiens]
Length = 350
Score = 137 bits (345), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 86/275 (31%), Positives = 157/275 (57%), Gaps = 12/275 (4%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S+DN+AL F FG + +V + N S+G+A + F++ A A +A MN
Sbjct: 76 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMN 134
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G + ++ V + + P +R+ V ++ + VFVKN+ + +D+E+LK F ++G
Sbjct: 135 GVRLNNRQVYVGRFKF-PEERAAEVRTRDRATFTN-VFVKNIGDDIDDEKLKELFCEYGP 192
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFP 216
VK++RD +GKSKGFGF+++ +++AA+KA+++++G+ I +V A+ +
Sbjct: 193 TESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAEL 252
Query: 217 KVKPPLLQPARKNK-----IFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIG 267
+ + L+ K++ I++ NL IN+ + +E F+ FG+I+ + ++ + K G
Sbjct: 253 RRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGKGFG 312
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
+ F + AT AV MNG + SKPL VTL +
Sbjct: 313 VVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQAR 347
Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 76/255 (29%), Positives = 122/255 (47%), Gaps = 26/255 (10%)
Query: 51 LINEFKKFGTLRDVRVARNKNDES-RGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITF 109
L +F+ G LR R+ R+ S G+ + F PA+A+ A MN LI KP + +
Sbjct: 2 LYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMW 61
Query: 110 VELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGK 169
+ R VG +F+KNL +++D L F FGNI+ K+V D+NG
Sbjct: 62 SQPDDRLRKSGVG---------NIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG- 111
Query: 170 SKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQP---A 226
SKG+ ++ F S AA +AI MNG + + +V G+ FP+ + ++ A
Sbjct: 112 SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYV-------GRFKFPEERAAEVRTRDRA 164
Query: 227 RKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAV 281
+FV N+ +I++ + +ELF +G S ++ D K GF+ + + A AV
Sbjct: 165 TFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAV 224
Query: 282 STMNGHVFKSKPLKV 296
++G K L V
Sbjct: 225 LDLHGKSIDGKVLYV 239
>gi|412991277|emb|CCO16122.1| predicted protein [Bathycoccus prasinos]
Length = 620
Score = 137 bits (345), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 90/280 (32%), Positives = 146/280 (52%), Gaps = 24/280 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ +D AL + F +FG + +VA + S+G+ I F+T A AK+A ++N
Sbjct: 133 IFIKNLDKDIDTVALRDTFAQFGNIVSAKVATDGQGNSKGYGFIQFDTEAAAKEAIEKVN 192
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G + K V + P QR G E ++ + VFVKNL + V +EEL+ F FG
Sbjct: 193 GMELNDKVVYVG-----PFQRRAERGTTETKF--NNVFVKNLGDEVTDEELRKVFEGFGP 245
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL---------AE 207
+ V I +DE+GKSKGFGF+ + + + A KA+ E++G+ + + +V AE
Sbjct: 246 VTSVMISKDEDGKSKGFGFVCYETPEDASKAVEELDGKHGEEDKKWVVCRAQKKAEREAE 305
Query: 208 IVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD---- 263
+ K F + ++ +++ NL ++ ELF FGTITS ++ D
Sbjct: 306 L---KAKFEAERRERMEKMAGANLYIKNLEDGADDETLRELFKEFGTITSCRVMRDASGV 362
Query: 264 -KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
+ F+ F P+ AT AV+ +NG + +KPL V L+ K
Sbjct: 363 SRGSAFVAFSSPEEATRAVTELNGKMVGAKPLYVALAQRK 402
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 75/256 (29%), Positives = 122/256 (47%), Gaps = 24/256 (9%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +LE S L F G + +RV R+ S G+A + F+ +A +A +
Sbjct: 45 LYVGDLESSATEAQLYELFSTIGPVVSIRVCRDLITRRSLGYAYVNFSQAQDAARAIDVL 104
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N ++ KP+ I + + P R VG +F+KNL + +D L+ F +FG
Sbjct: 105 NFQVVNGKPIRILYSQRDPTIRKSGVG---------NIFIKNLDKDIDTVALRDTFAQFG 155
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ D G SKG+GFIQF + AA++AI ++NG + +V F
Sbjct: 156 NIVSAKVATDGQGNSKGYGFIQFDTEAAAKEAIEKVNGMELNDKVVYVG---------PF 206
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIE 270
+ + N +FV NL + + E ++F FG +TS + D K GF+
Sbjct: 207 QRRAERGTTETKFNNVFVKNLGDEVTDEELRKVFEGFGPVTSVMISKDEDGKSKGFGFVC 266
Query: 271 FIMPKHATHAVSTMNG 286
+ P+ A+ AV ++G
Sbjct: 267 YETPEDASKAVEELDG 282
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 52/83 (62%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L++ NLE D++ L FK+FGT+ RV R+ + SRG A + F++P EA +A E+N
Sbjct: 326 LYIKNLEDGADDETLRELFKEFGTITSCRVMRDASGVSRGSAFVAFSSPEEATRAVTELN 385
Query: 97 GHLIGSKPVIITFVELKPGQRSK 119
G ++G+KP+ + + K +R +
Sbjct: 386 GKMVGAKPLYVALAQRKEDRRMR 408
>gi|224137600|ref|XP_002327166.1| predicted protein [Populus trichocarpa]
gi|222835481|gb|EEE73916.1| predicted protein [Populus trichocarpa]
Length = 632
Score = 137 bits (344), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 86/276 (31%), Positives = 148/276 (53%), Gaps = 15/276 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ +D++AL + F FG + +VA + + +S+G+ + F++ A+ A ++N
Sbjct: 102 IFIKNLDKGIDHKALHDTFSSFGNILSCKVATDASGQSKGYGFVQFDSEEAAQNAIDKLN 161
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G L+ K V + L+ R + K + VFVKNL E+ +EELK+ F + G
Sbjct: 162 GMLVNDKQVYVGHF-LRKQDRDGAL----YSIKFNNVFVKNLAESTTDEELKNIFAEHGA 216
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKV-- 214
I ++RD +GKSK FGF+ F S A KA+ +NG+ I +V A+ +++
Sbjct: 217 ITSAVVMRDADGKSKCFGFVNFESADDAAKAVEALNGKKIDGEEWYVGKAQKKSERELEL 276
Query: 215 ---FPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHI 266
F + + + +++ NL +IN+ + +ELF+ FG ITS ++ D +
Sbjct: 277 KGRFEQSMKETVDKFQGLNLYIKNLDDSINDEKLKELFSDFGAITSCKVMRDPSGISRGS 336
Query: 267 GFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ F P+ A+ A++ MNG + SKPL V L+ K
Sbjct: 337 GFVAFSTPEEASRALAEMNGKMLISKPLYVALAQRK 372
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 75/256 (29%), Positives = 128/256 (50%), Gaps = 22/256 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L+ +V + L + F + G + VRV R+ S G+ + ++ P +A +A +
Sbjct: 14 LYVGDLDFNVTDSQLYDVFNQVGQVVSVRVCRDLSTRRSLGYGYVNYSNPQDAARALDVL 73
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N + +KP+ I + P R + +F+KNL + +D + L F FG
Sbjct: 74 NFTPLNNKPIRIMYSHRDPSIRKSGMA---------NIFIKNLDKGIDHKALHDTFSSFG 124
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ D +G+SKG+GF+QF S +AA+ AI ++NG ++ +V G +
Sbjct: 125 NILSCKVATDASGQSKGYGFVQFDSEEAAQNAIDKLNGMLVNDKQVYV-------GHFLR 177
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIE 270
+ + L + N +FV NL + + E + +FA G ITS+ ++ D K GF+
Sbjct: 178 KQDRDGALYSIKFNNVFVKNLAESTTDEELKNIFAEHGAITSAVVMRDADGKSKCFGFVN 237
Query: 271 FIMPKHATHAVSTMNG 286
F A AV +NG
Sbjct: 238 FESADDAAKAVEALNG 253
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 56/97 (57%)
Query: 23 RSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVF 82
+S KE ++ L++ NL+ S++++ L F FG + +V R+ + SRG + F
Sbjct: 282 QSMKETVDKFQGLNLYIKNLDDSINDEKLKELFSDFGAITSCKVMRDPSGISRGSGFVAF 341
Query: 83 NTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSK 119
+TP EA +A EMNG ++ SKP+ + + K +R++
Sbjct: 342 STPEEASRALAEMNGKMLISKPLYVALAQRKEERRAR 378
>gi|197097448|ref|NP_001126434.1| polyadenylate-binding protein 5 [Pongo abelii]
gi|55731438|emb|CAH92432.1| hypothetical protein [Pongo abelii]
Length = 382
Score = 137 bits (344), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 89/285 (31%), Positives = 157/285 (55%), Gaps = 32/285 (11%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S+DN+AL F FG + +V + N S+G+A + F++ A A +A MN
Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGDILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMN 166
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G + ++ V + + P +R+ V ++ + VFVKN+ + +D+E+LK F ++G
Sbjct: 167 GVRLNNRQVYVGRFKF-PEERAAEVRTRDRATFTN-VFVKNIGDDIDDEKLKELFCEYGP 224
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF- 215
VK++RD +GKSKGFGF+++ +++AA+KA+++++G+ I +V A+ KK+
Sbjct: 225 TESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQ----KKIER 280
Query: 216 --------------PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLV 261
K +PP + I++ NL IN+ + +E F+ FG+I+ + ++
Sbjct: 281 LAELRRRFERLRLKEKSRPPGVP------IYIKNLDETINDEKLKEEFSSFGSISRAKVM 334
Query: 262 SD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
+ K G + F + AT AV MNG + SKPL VTL +
Sbjct: 335 MEVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQAR 379
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 79/267 (29%), Positives = 128/267 (47%), Gaps = 26/267 (9%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDES-RGFAIIVFNTPAEAKKARVEMNG 97
V +L+P V L +F+ G LR R+ R+ S G+ + F PA+A+ A MN
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 98 HLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNI 157
LI KP + + + R VG +F+KNL +++D L F FG+I
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVG---------NIFIKNLDKSIDNRALFYLFSAFGDI 132
Query: 158 IEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPK 217
+ K+V D+NG SKG+ ++ F S AA +AI MNG + + +V G+ FP+
Sbjct: 133 LSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYV-------GRFKFPE 184
Query: 218 VKPPLLQP---ARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFI 269
+ ++ A +FV N+ +I++ + +ELF +G S ++ D K GF+
Sbjct: 185 ERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFV 244
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKV 296
+ + A AV ++G K L V
Sbjct: 245 RYETHEAAQKAVLDLHGKSIDGKVLYV 271
>gi|357145576|ref|XP_003573691.1| PREDICTED: polyadenylate-binding protein 2-like [Brachypodium
distachyon]
Length = 663
Score = 137 bits (344), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 92/278 (33%), Positives = 148/278 (53%), Gaps = 18/278 (6%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S+DN+AL + F FGT+ +VA + ES+G+ + + A+ A E+N
Sbjct: 132 IFIKNLDKSIDNKALFDTFSAFGTILSCKVATEISGESKGYGFVQYEQDESAQNAINELN 191
Query: 97 GHLIGSKPVIIT-FVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
G L+ K V + FV + +R G K + V+VKNL E+ E+ LK F KFG
Sbjct: 192 GMLLNDKKVYVGPFVRKQ--ERENVFGSP----KFNNVYVKNLSESTTEDNLKEMFGKFG 245
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEI-----VP 210
I V +VR ++GKS+ FGF+ F + A +A+ ++NG+ + +V A+ +
Sbjct: 246 PITSVIVVRADDGKSRCFGFVNFENPDDAARAVEDLNGKKLDDKELYVGRAQKKSEREMQ 305
Query: 211 GKKVFPKVKPPLLQPARKNKIFVANLPSNINNSE-FEELFARFGTITSSSLVSD-----K 264
K+ F K + +++ NL ++++ E +ELFA FGTITS ++ D K
Sbjct: 306 LKEKFEKSNKETADKNQGTNLYLKNLDGSVDDDEKLKELFAEFGTITSCKVMRDSNGVNK 365
Query: 265 HIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ F + A+ A+ MNG + SKPL V L+ K
Sbjct: 366 GSGFVAFKSSEDASRALVAMNGKMVGSKPLYVALAQRK 403
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 78/266 (29%), Positives = 132/266 (49%), Gaps = 22/266 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDE-SRGFAIIVFNTPAEAKKARVEM 95
L+V +L+ SV + L + F + G++ VRV R+ N S G+A + F++PA+A +A +
Sbjct: 44 LYVGDLDVSVQDAQLFDVFSQVGSVVSVRVCRDVNTRMSLGYAYVNFSSPADAARAMEML 103
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N + KP+ I + P R +F+KNL +++D + L F FG
Sbjct: 104 NFTPVNGKPIRIMYSNRDPSSRKSGAA---------NIFIKNLDKSIDNKALFDTFSAFG 154
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
I+ K+ + +G+SKG+GF+Q+ ++A+ AI E+NG ++ +V G V
Sbjct: 155 TILSCKVATEISGESKGYGFVQYEQDESAQNAINELNGMLLNDKKVYV-------GPFVR 207
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS-----DKHIGFIE 270
+ + + + N ++V NL + +E+F +FG ITS +V + GF+
Sbjct: 208 KQERENVFGSPKFNNVYVKNLSESTTEDNLKEMFGKFGPITSVIVVRADDGKSRCFGFVN 267
Query: 271 FIMPKHATHAVSTMNGHVFKSKPLKV 296
F P A AV +NG K L V
Sbjct: 268 FENPDDAARAVEDLNGKKLDDKELYV 293
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 62/183 (33%), Positives = 99/183 (54%), Gaps = 8/183 (4%)
Query: 33 KENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKAR 92
K N ++V NL S L F KFG + V V R + +SR F + F P +A +A
Sbjct: 219 KFNNVYVKNLSESTTEDNLKEMFGKFGPITSVIVVRADDGKSRCFGFVNFENPDDAARAV 278
Query: 93 VEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKK--DK-----VFVKNLVETVDEE 145
++NG + K + + + K + + EK K+ DK +++KNL +VD++
Sbjct: 279 EDLNGKKLDDKELYVGRAQKKSEREMQLKEKFEKSNKETADKNQGTNLYLKNLDGSVDDD 338
Query: 146 E-LKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVS 204
E LK F +FG I K++RD NG +KG GF+ F S + A +A++ MNG+M+ +V+
Sbjct: 339 EKLKELFAEFGTITSCKVMRDSNGVNKGSGFVAFKSSEDASRALVAMNGKMVGSKPLYVA 398
Query: 205 LAE 207
LA+
Sbjct: 399 LAQ 401
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 57/98 (58%), Gaps = 1/98 (1%)
Query: 23 RSNKENNKVYKENELHVNNLEPSVDNQALINE-FKKFGTLRDVRVARNKNDESRGFAIIV 81
+SNKE + L++ NL+ SVD+ + E F +FGT+ +V R+ N ++G +
Sbjct: 312 KSNKETADKNQGTNLYLKNLDGSVDDDEKLKELFAEFGTITSCKVMRDSNGVNKGSGFVA 371
Query: 82 FNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSK 119
F + +A +A V MNG ++GSKP+ + + K +R++
Sbjct: 372 FKSSEDASRALVAMNGKMVGSKPLYVALAQRKEERRAR 409
>gi|356521524|ref|XP_003529405.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 651
Score = 137 bits (344), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 90/288 (31%), Positives = 150/288 (52%), Gaps = 33/288 (11%)
Query: 34 ENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARV 93
+ + + NL+ ++D++AL + F FG + +VA + + +S+G+ + F+ A+KA
Sbjct: 118 QGNIFIKNLDRAIDHKALHDTFSTFGNILSCKVATDSSGQSKGYGFVQFDNEESAQKAIE 177
Query: 94 EMNGHLIGSKPVIITFVELKPGQRSKPVGP----EEKQYKKDK-----VFVKNLVETVDE 144
++NG L+ K V VGP +E++ DK VFVKNL E+ +
Sbjct: 178 KLNGMLLNDKQVY--------------VGPFLRKQERESAADKAKFNNVFVKNLSESTTD 223
Query: 145 EELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVS 204
+ELK+ F +FG I ++RD +GKSK FGF+ F + A +A+ +NG+ +V
Sbjct: 224 DELKNTFGEFGTITSAVVMRDGDGKSKCFGFVNFENADDAARAVEALNGKNFDDKEWYVG 283
Query: 205 LAEIVPG-----KKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSS 259
A+ K+ F + + ++V NL +I + + +ELF+ FGTITS
Sbjct: 284 KAQKKSERENELKQRFEQSMKEAADKYQGANLYVKNLDDSIGDEKLKELFSPFGTITSCK 343
Query: 260 LVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
++ D + GF+ F P+ A+ A+ MNG + SKPL VTL+ K
Sbjct: 344 VMRDPNGLSRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVTLAQRK 391
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 79/262 (30%), Positives = 132/262 (50%), Gaps = 22/262 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L+P+V + L + F + G + VRV R+ + S G+ + F+ P +A +A +
Sbjct: 33 LYVGDLDPNVTDAQLYDLFNQLGQVVSVRVCRDLTSRRSLGYGYVNFSNPQDAARALDVL 92
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N + ++P+ I + P R G +F+KNL +D + L F FG
Sbjct: 93 NFTPLNNRPIRIMYSHRDPSIRKSGQG---------NIFIKNLDRAIDHKALHDTFSTFG 143
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ D +G+SKG+GF+QF + ++A+KAI ++NG ++ +V G +
Sbjct: 144 NILSCKVATDSSGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYV-------GPFLR 196
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIE 270
+ + A+ N +FV NL + + E + F FGTITS+ ++ D K GF+
Sbjct: 197 KQERESAADKAKFNNVFVKNLSESTTDDELKNTFGEFGTITSAVVMRDGDGKSKCFGFVN 256
Query: 271 FIMPKHATHAVSTMNGHVFKSK 292
F A AV +NG F K
Sbjct: 257 FENADDAARAVEALNGKNFDDK 278
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 97/184 (52%), Gaps = 11/184 (5%)
Query: 33 KENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKAR 92
K N + V NL S + L N F +FGT+ V R+ + +S+ F + F +A +A
Sbjct: 208 KFNNVFVKNLSESTTDDELKNTFGEFGTITSAVVMRDGDGKSKCFGFVNFENADDAARAV 267
Query: 93 VEMNGHLIGSKPVIITFV--------ELKPGQR-SKPVGPEEKQYKKDKVFVKNLVETVD 143
+NG K + ELK QR + + +Y+ ++VKNL +++
Sbjct: 268 EALNGKNFDDKEWYVGKAQKKSERENELK--QRFEQSMKEAADKYQGANLYVKNLDDSIG 325
Query: 144 EEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFV 203
+E+LK F FG I K++RD NG S+G GF+ F + + A +A++EMNG+M+ +V
Sbjct: 326 DEKLKELFSPFGTITSCKVMRDPNGLSRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 385
Query: 204 SLAE 207
+LA+
Sbjct: 386 TLAQ 389
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 58/97 (59%)
Query: 23 RSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVF 82
+S KE Y+ L+V NL+ S+ ++ L F FGT+ +V R+ N SRG + F
Sbjct: 301 QSMKEAADKYQGANLYVKNLDDSIGDEKLKELFSPFGTITSCKVMRDPNGLSRGSGFVAF 360
Query: 83 NTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSK 119
+TP EA +A +EMNG ++ SKP+ +T + K +R++
Sbjct: 361 STPEEASRALLEMNGKMVVSKPLYVTLAQRKEDRRAR 397
>gi|403295651|ref|XP_003938748.1| PREDICTED: polyadenylate-binding protein 5 [Saimiri boliviensis
boliviensis]
Length = 382
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 89/285 (31%), Positives = 157/285 (55%), Gaps = 32/285 (11%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S+DN+AL F FG + +V + N S+G+A + F++ A A +A MN
Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMN 166
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G + ++ V + + P +R+ V ++ + VFVKN+ + +D+E+LK F ++G
Sbjct: 167 GVRLNNRQVYVGRFKF-PEERAAEVRTRDRATFTN-VFVKNIGDDIDDEKLKELFCEYGP 224
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF- 215
VK++RD +GKSKGFGF+++ +++AA+KA+++++G+ I +V A+ KK+
Sbjct: 225 TESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQ----KKIER 280
Query: 216 --------------PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLV 261
K +PP + I++ NL IN+ + +E F+ FG+I+ + ++
Sbjct: 281 LAELRRRFERLRLKEKSRPPGVP------IYIKNLDETINDEKLKEEFSSFGSISRAKVM 334
Query: 262 SD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
+ K G + F + AT AV MNG + SKPL VTL +
Sbjct: 335 LEVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQAR 379
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 80/267 (29%), Positives = 128/267 (47%), Gaps = 26/267 (9%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDES-RGFAIIVFNTPAEAKKARVEMNG 97
V +L+P V L +F+ G LR R+ R+ S G+ + F PA+A+ A MN
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 98 HLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNI 157
LI KP + + + R VG +F+KNL +++D L F FGNI
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVG---------NIFIKNLDKSIDNRALFYLFSAFGNI 132
Query: 158 IEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPK 217
+ K+V D+NG SKG+ ++ F S AA +AI MNG + + +V G+ FP+
Sbjct: 133 LSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYV-------GRFKFPE 184
Query: 218 VKPPLLQP---ARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFI 269
+ ++ A +FV N+ +I++ + +ELF +G S ++ D K GF+
Sbjct: 185 ERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFV 244
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKV 296
+ + A AV ++G K L V
Sbjct: 245 RYETHEAAQKAVLDLHGKSIDGKVLYV 271
>gi|213403408|ref|XP_002172476.1| polyadenylate-binding protein [Schizosaccharomyces japonicus
yFS275]
gi|212000523|gb|EEB06183.1| polyadenylate-binding protein [Schizosaccharomyces japonicus
yFS275]
Length = 662
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 85/276 (30%), Positives = 146/276 (52%), Gaps = 13/276 (4%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+P++DN+AL + F FGT+ +VA ++ S+G+ + F + A A +N
Sbjct: 169 IFIKNLDPAIDNKALHDTFSAFGTILSCKVALDEYGNSKGYGFVHFASIDSANAAIEHVN 228
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G L+ K V +V +R + E + V++KN+ V +EE F KFG
Sbjct: 229 GMLLNDKKV---YVGHHVSRRDRQSKFEAMKANFTNVYIKNIDPEVTDEEFSGLFEKFGA 285
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEI-----VPG 211
I +V+DE+GK +GFGF+ F S++AA+KA+ EMN +V A+
Sbjct: 286 ITSFSLVKDESGKPRGFGFVNFESHEAAQKAVDEMNDYEFHGKKLYVGRAQKRHEREAEL 345
Query: 212 KKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHI 266
+K + ++K + + +F+ NL ++++ + F+ FGTITS+ +++D K
Sbjct: 346 RKRYEQMKLEKMSKYQGVNLFIKNLSDEVDDNLLKTEFSAFGTITSAKVMTDENGKSKGF 405
Query: 267 GFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ + P+ AT A++ MN + KPL V L+ K
Sbjct: 406 GFVCYSSPEEATKAIAEMNQRMLAGKPLYVALAQRK 441
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 82/272 (30%), Positives = 126/272 (46%), Gaps = 24/272 (8%)
Query: 33 KENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKA 91
K L+V L+PSV L F G + +RV R+ +S G+A + ++ + +KA
Sbjct: 77 KNTSLYVGELDPSVTEAMLFEIFSTVGPVASIRVCRDAVTRQSLGYAYVNYHNADDGEKA 136
Query: 92 RVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHF 151
E+N LI + I + + P R G +F+KNL +D + L F
Sbjct: 137 LEELNYSLIKGRACRIMWSQRDPSLRKTGTG---------NIFIKNLDPAIDNKALHDTF 187
Query: 152 IKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPG 211
FG I+ K+ DE G SKG+GF+ F S +A AI +NG ++ +V G
Sbjct: 188 SAFGTILSCKVALDEYGNSKGYGFVHFASIDSANAAIEHVNGMLLNDKKVYV-------G 240
Query: 212 KKVFPKVKPPLLQPARKN--KIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----K 264
V + + + + N +++ N+ + + EF LF +FG ITS SLV D +
Sbjct: 241 HHVSRRDRQSKFEAMKANFTNVYIKNIDPEVTDEEFSGLFEKFGAITSFSLVKDESGKPR 300
Query: 265 HIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
GF+ F + A AV MN + F K L V
Sbjct: 301 GFGFVNFESHEAAQKAVDEMNDYEFHGKKLYV 332
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 50/88 (56%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L + NL VD+ L EF FGT+ +V ++N +S+GF + +++P EA KA
Sbjct: 360 YQGVNLFIKNLSDEVDDNLLKTEFSAFGTITSAKVMTDENGKSKGFGFVCYSSPEEATKA 419
Query: 92 RVEMNGHLIGSKPVIITFVELKPGQRSK 119
EMN ++ KP+ + + K +RS+
Sbjct: 420 IAEMNQRMLAGKPLYVALAQRKDVRRSQ 447
>gi|126342190|ref|XP_001379497.1| PREDICTED: polyadenylate-binding protein 1 [Monodelphis domestica]
Length = 669
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 95/308 (30%), Positives = 157/308 (50%), Gaps = 23/308 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KG + W + D G R N + V NLE S+DN+AL + F FG +
Sbjct: 112 KGNPIRIMWSQ---RDPGQRKRGVGN-------VFVKNLEKSIDNKALYDTFSTFGRILS 161
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V ++N S+G+ + F T A KA +MNG L+ + V + + + +R +G
Sbjct: 162 CKVISDENG-SKGYGFVHFETQESAGKAIEKMNGMLLNNLKVFVGRFKSR-RERESELGV 219
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
+ K Y +++KN E +D++ L F K+G + VK++ D+ G+SKGFGF+ F S++
Sbjct: 220 KAKDYTN--IYIKNFGENMDDQRLTEIFAKYGPTLSVKVMTDDCGRSKGFGFVSFQSHED 277
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A+ A+ +MNG+ + +V A+ K+ F ++K + +++ NL
Sbjct: 278 AQAAVDDMNGKQLNGKQIYVGRAQKKRERQTELKRHFEQIKQNQHIRYQGVNLYIKNLDD 337
Query: 239 NINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
IN+ + F+ FGTITS+ ++ + K GF+ F K A A MNG + SKPL
Sbjct: 338 TINDEHLRKEFSPFGTITSAKVMMENGRSKGFGFVCFSSSKDAAKASREMNGKLVASKPL 397
Query: 295 KVTLSGTK 302
V+L+ K
Sbjct: 398 YVSLAQRK 405
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 82/266 (30%), Positives = 129/266 (48%), Gaps = 21/266 (7%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L V L +F G + +RV R+ S G+A + F A A+ M
Sbjct: 47 LYVGDLHHDVTESMLYEKFSPAGPILSIRVCRDSVTQHSLGYAYVNFQHRAHAEWVLATM 106
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N +I P+ I + + PGQR + VG VFVKNL +++D + L F FG
Sbjct: 107 NLDVIKGNPIRIMWSQRDPGQRKRGVG---------NVFVKNLEKSIDNKALYDTFSTFG 157
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
I+ K++ DENG SKG+GF+ F + ++A KAI +MNG ++ + FV + ++
Sbjct: 158 RILSCKVISDENG-SKGYGFVHFETQESAGKAIEKMNGMLLNNLKVFVGRFKSRRERESE 216
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIE 270
VK I++ N N+++ E+FA++G S +++D K GF+
Sbjct: 217 LGVK-----AKDYTNIYIKNFGENMDDQRLTEIFAKYGPTLSVKVMTDDCGRSKGFGFVS 271
Query: 271 FIMPKHATHAVSTMNGHVFKSKPLKV 296
F + A AV MNG K + V
Sbjct: 272 FQSHEDAQAAVDDMNGKQLNGKQIYV 297
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 56/93 (60%), Gaps = 2/93 (2%)
Query: 26 KENNKV-YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNT 84
K+N + Y+ L++ NL+ +++++ L EF FGT+ +V +N S+GF + F++
Sbjct: 318 KQNQHIRYQGVNLYIKNLDDTINDEHLRKEFSPFGTITSAKVMM-ENGRSKGFGFVCFSS 376
Query: 85 PAEAKKARVEMNGHLIGSKPVIITFVELKPGQR 117
+A KA EMNG L+ SKP+ ++ + K +R
Sbjct: 377 SKDAAKASREMNGKLVASKPLYVSLAQRKEERR 409
>gi|116202083|ref|XP_001226853.1| hypothetical protein CHGG_08926 [Chaetomium globosum CBS 148.51]
gi|121932498|sp|Q2GSX8.1|PABP_CHAGB RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|88177444|gb|EAQ84912.1| hypothetical protein CHGG_08926 [Chaetomium globosum CBS 148.51]
Length = 783
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 86/269 (31%), Positives = 136/269 (50%), Gaps = 26/269 (9%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+PSV L F + G++ +RV R+ S G+A + +N+ ++ +KA E+
Sbjct: 67 LYVGELDPSVTEAMLFELFSQIGSVASIRVCRDTITRRSLGYAYVNYNSTSDGEKALEEL 126
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI +P I + + P R G VF+KNL +D + L F FG
Sbjct: 127 NYTLIKGRPCRIMWSQRDPALRKTGQG---------NVFIKNLDVAIDNKALHDTFAAFG 177
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKV- 214
NI+ K+ +DENG SKG+GF+ + + +AA +AI +N ++ +V +P K
Sbjct: 178 NILSCKVAQDENGNSKGYGFVHYETDEAAAQAIKHVNNMLLNEKKVYVGYH--IPKKDRQ 235
Query: 215 --FPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIG 267
F ++K A I+V N+ + EF +LFA++G +TSSSL D + G
Sbjct: 236 SKFEEMK------ANFTNIYVKNISLEATDEEFRDLFAKYGDVTSSSLARDSEGKSRGFG 289
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
F+ F + A AV +NG F+ + L V
Sbjct: 290 FVNFTTHECAAKAVEELNGKEFRGQDLYV 318
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 89/360 (24%), Positives = 160/360 (44%), Gaps = 80/360 (22%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KG+ W + D R + N + + NL+ ++DN+AL + F FG +
Sbjct: 132 KGRPCRIMWSQ---RDPALRKTGQGN-------VFIKNLDVAIDNKALHDTFAAFGNILS 181
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+VA+++N S+G+ + + T A +A +N L+ K V + + K ++SK
Sbjct: 182 CKVAQDENGNSKGYGFVHYETDEAAAQAIKHVNNMLLNEKKVYVGYHIPKKDRQSKF--- 238
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
EE + ++VKN+ +EE + F K+G++ + RD GKS+GFGF+ F +++
Sbjct: 239 EEMKANFTNIYVKNISLEATDEEFRDLFAKYGDVTSSSLARDSEGKSRGFGFVNFTTHEC 298
Query: 184 AEKAIIEMNGRMIQHNSTFVSLA--------EIVPGKKVFPKVKPPLLQPARKNK---IF 232
A KA+ E+NG+ + +V A E+ +K + + L+ A K + ++
Sbjct: 299 AAKAVEELNGKEFRGQDLYVGRAQKKHEREEEL---RKSYEAAR---LEKANKYQGVNLY 352
Query: 233 VANLPSNINNSEFEELFARFGTITSSSLVSD----------------------------- 263
+ NL +I++ + ++F+ +G ITS+ ++ D
Sbjct: 353 IKNLADDIDDDKLRQMFSEYGPITSAKVMRDAVTEGSAEEETEGKDKENKKEGEQAAEAE 412
Query: 264 ---------------------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
K GF+ F P AT AV+ MN + + KPL V L+ K
Sbjct: 413 GEAEGAEKKTEKKGDRRLGKSKGFGFVCFSNPDDATKAVAEMNQRMIEGKPLYVALAQRK 472
>gi|324509105|gb|ADY43836.1| Polyadenylate-binding protein 1, partial [Ascaris suum]
Length = 661
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 85/278 (30%), Positives = 148/278 (53%), Gaps = 15/278 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S+DN+A+ + F FG + +VA ++ S+G+ + F T A+KA ++N
Sbjct: 109 IFIKNLDKSIDNKAIYDTFSMFGNILSCKVANDEESNSKGYGFVHFETEESAQKAIEKVN 168
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G L+ K V + + + R + +G +++ VF+KN + +D+E+L+ F KFG
Sbjct: 169 GMLLEGKKVYVGKFQPRAA-RMREMGETARRFTN--VFIKNFADELDKEKLEKLFAKFGK 225
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMI--QHNSTFVSLAE-----IV 209
I ++ D +GKSKGFGF+ F + + AEKA+ EM+ + +V A+
Sbjct: 226 ITSCAVMSDADGKSKGFGFVAFENPEDAEKAVNEMHEYQLPDSERKLYVCRAQKKNERSA 285
Query: 210 PGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----K 264
K+ + + K +Q + ++V NL +++ + F +G ITS+ ++ D K
Sbjct: 286 ELKRRYEQQKVERMQRYQGVNLYVKNLDDTVDDEVLRQNFESYGKITSAKVMCDDNGRSK 345
Query: 265 HIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ F P AT AV+ MNG + +KPL V L+ K
Sbjct: 346 GFGFVCFEKPDEATKAVTEMNGKMMCTKPLYVALAQRK 383
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 80/263 (30%), Positives = 135/263 (51%), Gaps = 26/263 (9%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 16 YPMASLYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRDAITRRSLGYAYVNFQQPADAER 75
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN ++ KP+ I + + P R G +F+KNL +++D + +
Sbjct: 76 ALDTMNFDVMYGKPIRIMWSQRDPSMRRSGAG---------NIFIKNLDKSIDNKAIYDT 126
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVP 210
F FGNI+ K+ DE SKG+GF+ F + ++A+KAI ++NG +++ +V
Sbjct: 127 FSMFGNILSCKVANDEESNSKGYGFVHFETEESAQKAIEKVNGMLLEGKKVYVG------ 180
Query: 211 GKKVFPKVK--PPLLQPARK-NKIFVANLPSNINNSEFEELFARFGTITSSSLVSD---- 263
K P+ + + AR+ +F+ N ++ + E+LFA+FG ITS +++SD
Sbjct: 181 --KFQPRAARMREMGETARRFTNVFIKNFADELDKEKLEKLFAKFGKITSCAVMSDADGK 238
Query: 264 -KHIGFIEFIMPKHATHAVSTMN 285
K GF+ F P+ A AV+ M+
Sbjct: 239 SKGFGFVAFENPEDAEKAVNEMH 261
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 53/93 (56%)
Query: 27 ENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPA 86
E + Y+ L+V NL+ +VD++ L F+ +G + +V + N S+GF + F P
Sbjct: 297 ERMQRYQGVNLYVKNLDDTVDDEVLRQNFESYGKITSAKVMCDDNGRSKGFGFVCFEKPD 356
Query: 87 EAKKARVEMNGHLIGSKPVIITFVELKPGQRSK 119
EA KA EMNG ++ +KP+ + + K ++++
Sbjct: 357 EATKAVTEMNGKMMCTKPLYVALAQRKEDRKAQ 389
>gi|149244358|ref|XP_001526722.1| polyadenylate-binding protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|158514320|sp|A5DW14.1|PABP_LODEL RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|146449116|gb|EDK43372.1| polyadenylate-binding protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 661
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 97/309 (31%), Positives = 153/309 (49%), Gaps = 23/309 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
+G+ W + D AR + + N + + NL P++DN+AL + F FG +
Sbjct: 134 EGRPCRIMWSQ---RDPSARRSGDGN-------IFIKNLHPAIDNKALHDTFSAFGKILS 183
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
V+VA + +S+ F + + T A+ A +NG L+ + V + K + SK
Sbjct: 184 VKVATDDLGQSKCFGFVHYETEEAAQAAIESVNGMLLNDREVYVGKHVSKKDRESKL--- 240
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
EE + ++VKN+ E+E + F FG I + + +D GKSKGFGF+ F ++A
Sbjct: 241 EEMKANYTNIYVKNIDLAYTEKEFEELFAPFGKITSIYLEKDAEGKSKGFGFVNFEEHEA 300
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A KA+ E+N + I +V A+ KK + V+ L + +FV NL
Sbjct: 301 AAKAVEELNDKEINGQKIYVGRAQKKRERTEELKKQYEAVRLEKLSKYQGVNLFVKNLDE 360
Query: 239 NINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKP 293
I++ + EE F FGTITSS ++ D K GF+ F P+ AT A++ MN + KP
Sbjct: 361 QIDSEKLEEEFKPFGTITSSKVMVDDAGKSKGFGFVCFSTPEEATKAITEMNQRMVNGKP 420
Query: 294 LKVTLSGTK 302
L V L+ K
Sbjct: 421 LYVALAQRK 429
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 81/257 (31%), Positives = 124/257 (48%), Gaps = 24/257 (9%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L PSV+ L F G + +RV R+ + +S G+A + ++ + +KA E+
Sbjct: 69 LYVGELNPSVNEATLFEIFSPIGQVASIRVCRDAVSKKSLGYAYVNYHKLEDGEKAIEEL 128
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N + +P I + + P R G +F+KNL +D + L F FG
Sbjct: 129 NYTPVEGRPCRIMWSQRDPSARRSGDG---------NIFIKNLHPAIDNKALHDTFSAFG 179
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
I+ VK+ D+ G+SK FGF+ + + +AA+ AI +NG ++ +V GK V
Sbjct: 180 KILSVKVATDDLGQSKCFGFVHYETEEAAQAAIESVNGMLLNDREVYV-------GKHVS 232
Query: 216 PKVKPPLLQPARKN--KIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGF 268
K + L+ + N I+V N+ EFEELFA FG ITS L D K GF
Sbjct: 233 KKDRESKLEEMKANYTNIYVKNIDLAYTEKEFEELFAPFGKITSIYLEKDAEGKSKGFGF 292
Query: 269 IEFIMPKHATHAVSTMN 285
+ F + A AV +N
Sbjct: 293 VNFEEHEAAAKAVEELN 309
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 51/88 (57%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L V NL+ +D++ L EFK FGT+ +V + +S+GF + F+TP EA KA
Sbjct: 348 YQGVNLFVKNLDEQIDSEKLEEEFKPFGTITSSKVMVDDAGKSKGFGFVCFSTPEEATKA 407
Query: 92 RVEMNGHLIGSKPVIITFVELKPGQRSK 119
EMN ++ KP+ + + K +RS+
Sbjct: 408 ITEMNQRMVNGKPLYVALAQRKDVRRSQ 435
>gi|354466116|ref|XP_003495521.1| PREDICTED: polyadenylate-binding protein 4-like [Cricetulus
griseus]
gi|344243583|gb|EGV99686.1| Polyadenylate-binding protein 4-like [Cricetulus griseus]
Length = 370
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 84/269 (31%), Positives = 146/269 (54%), Gaps = 13/269 (4%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+DN+ L F FG + +V ++ + SRG+ + + + A +A EMNG
Sbjct: 102 IKNLDKSIDNKTLYEHFSPFGKILSSKVMSDE-EGSRGYGFVHYQDQSAADRAIEEMNGK 160
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ V FV+ ++ + K + V++KNL + +D+E LK+ F K+G +
Sbjct: 161 LLRDCTV---FVDRFKSRKDREAELRSKTSEFTNVYIKNLGDNMDDEGLKNIFSKYGQTL 217
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKK 213
VK+++D+NGKSKGFGF+ F++++AA A+ EMNG+ I + FV A+ K+
Sbjct: 218 SVKVMKDDNGKSKGFGFVSFYNHEAARNAVEEMNGQDINGQTIFVGRAQKKVERQAELKE 277
Query: 214 VFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGFI 269
F ++K ++ + K+++ NL I++ F+ FG+I ++ + K G I
Sbjct: 278 KFEQMKKERIRARQAAKLYIKNLDETIDDETLRREFSSFGSICRVKVMQEAGQSKGFGLI 337
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKVTL 298
F P+ A A++ MNG + SK L + L
Sbjct: 338 CFFSPEAAAKAMAEMNGRILGSKALNIAL 366
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 72/262 (27%), Positives = 129/262 (49%), Gaps = 21/262 (8%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y+ L+V +L V L +F G + +R+ R+ + S G+A + F +A+K
Sbjct: 7 YRAASLYVGDLHEDVTEDVLFRKFNTVGPVLSIRICRDLVSRRSLGYAYVNFLQLDDAQK 66
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN LI K + + + + R +G VF+KNL +++D + L H
Sbjct: 67 ALDTMNFDLIQGKSIRLMWSQRDAYLRKSGIG---------NVFIKNLDKSIDNKTLYEH 117
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVP 210
F FG I+ K++ DE G S+G+GF+ + AA++AI EMNG++++ + FV +
Sbjct: 118 FSPFGKILSSKVMSDEEG-SRGYGFVHYQDQSAADRAIEEMNGKLLRDCTVFVDRFKSRK 176
Query: 211 GKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KH 265
++ + K +++ NL N+++ + +F+++G S ++ D K
Sbjct: 177 DREAELRSKTSEF-----TNVYIKNLGDNMDDEGLKNIFSKYGQTLSVKVMKDDNGKSKG 231
Query: 266 IGFIEFIMPKHATHAVSTMNGH 287
GF+ F + A +AV MNG
Sbjct: 232 FGFVSFYNHEAARNAVEEMNGQ 253
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 63/179 (35%), Positives = 106/179 (59%), Gaps = 10/179 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+++ NL ++D++ L N F K+G V+V ++ N +S+GF + F A+ A EMN
Sbjct: 192 VYIKNLGDNMDDEGLKNIFSKYGQTLSVKVMKDDNGKSKGFGFVSFYNHEAARNAVEEMN 251
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKD--------KVFVKNLVETVDEEELK 148
G I + + + + K +R + + +Q KK+ K+++KNL ET+D+E L+
Sbjct: 252 GQDINGQTIFVGRAQ-KKVERQAELKEKFEQMKKERIRARQAAKLYIKNLDETIDDETLR 310
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
F FG+I VK+++ E G+SKGFG I FFS +AA KA+ EMNGR++ + ++L +
Sbjct: 311 REFSSFGSICRVKVMQ-EAGQSKGFGLICFFSPEAAAKAMAEMNGRILGSKALNIALGQ 368
>gi|344277245|ref|XP_003410413.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Loxodonta africana]
Length = 602
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 83/270 (30%), Positives = 147/270 (54%), Gaps = 13/270 (4%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+DN+ L F FG + +V + + S+G+A + F + A +A EMNG
Sbjct: 295 IKNLDKSIDNKTLYEHFSTFGKILSSKVMSD-DQGSKGYAFVHFQNQSAADRAIEEMNGT 353
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ + V ++ + + + S+ + K + V++KN + +D+ LK F K+G +
Sbjct: 354 LLKNCRVFVSRFKSRKDRESEL---KNKASEFTNVYIKNFGDDMDDMRLKEVFSKYGTTL 410
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKK 213
VK++ D +GKSKGFGF+ F S++AA+ A+ EMNG+ I FV A+ K+
Sbjct: 411 SVKVMTDSSGKSKGFGFVSFASHEAAKNAVEEMNGKDINGQLIFVGRAQKKIERQAELKQ 470
Query: 214 VFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGFI 269
+F +++ + R K+++ NL I++ + + FA FG+I+ ++ + K G I
Sbjct: 471 MFEQLRQERFRRCRGVKLYIKNLDDTIDDEKLRKEFASFGSISRVKVMQEEGRSKGFGLI 530
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299
F + A A++ MNG + SKPL + L+
Sbjct: 531 CFSSHEEAIKAMTEMNGRILGSKPLNIALA 560
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 109/193 (56%), Gaps = 10/193 (5%)
Query: 23 RSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVF 82
R ++ NK + +++ N +D+ L F K+GT V+V + + +S+GF + F
Sbjct: 371 RESELKNKASEFTNVYIKNFGDDMDDMRLKEVFSKYGTTLSVKVMTDSSGKSKGFGFVSF 430
Query: 83 NTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKD--------KVF 134
+ AK A EMNG I + + + + K +R + +Q +++ K++
Sbjct: 431 ASHEAAKNAVEEMNGKDINGQLIFVGRAQKKI-ERQAELKQMFEQLRQERFRRCRGVKLY 489
Query: 135 VKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGR 194
+KNL +T+D+E+L+ F FG+I VK++++E G+SKGFG I F S++ A KA+ EMNGR
Sbjct: 490 IKNLDDTIDDEKLRKEFASFGSISRVKVMQEE-GRSKGFGLICFSSHEEAIKAMTEMNGR 548
Query: 195 MIQHNSTFVSLAE 207
++ ++LA+
Sbjct: 549 ILGSKPLNIALAQ 561
>gi|224085260|ref|XP_002307526.1| predicted protein [Populus trichocarpa]
gi|222856975|gb|EEE94522.1| predicted protein [Populus trichocarpa]
Length = 649
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 87/272 (31%), Positives = 144/272 (52%), Gaps = 17/272 (6%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+DN+AL F FG++ +VA + N +S+G+ + F A+ A +NG
Sbjct: 125 IKNLDTSIDNKALQETFASFGSVLSCKVAVDNNGQSKGYGFVQFENEEAAQSAINRLNGM 184
Query: 99 LIGSKPVII-TFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNI 157
LI K V + FV + +R + G K V+VKNL ET +E+LK F +G I
Sbjct: 185 LINDKEVFVGRFVRHQ--ERIEATGSP----KFTNVYVKNLSETTSDEDLKKFFSNYGAI 238
Query: 158 IEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEI-----VPGK 212
+++D++GKSKGFGF+ F S +A A+ ++NG +V A+ K
Sbjct: 239 TSAIVMKDQSGKSKGFGFVNFQSPDSAAAAVEKLNGTTFNDKVWYVGRAQRKGEREAELK 298
Query: 213 KVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIG 267
F + + + + +++ NL I++ + +ELF+ FG+ITS ++ D K G
Sbjct: 299 ARFEQERNSRYEKLKAANLYLKNLDDKIDDEKLKELFSEFGSITSCKVMLDQQGLSKGSG 358
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299
F+ F P+ A+ A++ MNG + KPL V ++
Sbjct: 359 FVAFSTPEEASRALNGMNGKMIGKKPLYVAVA 390
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/267 (28%), Positives = 129/267 (48%), Gaps = 22/267 (8%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
+ + L+V +LE +V+ L + F + + +RV R++ S G+A + F+ P +A
Sbjct: 30 FPNSSLYVGDLEHNVNEGQLFDLFSQVAQVVSIRVCRDQARRASLGYAYVNFSNPQDASN 89
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A +N + K + I P R VF+KNL ++D + L+
Sbjct: 90 AMELLNFTPLNGKAIRIMVSHRDPSMRKS---------GHANVFIKNLDTSIDNKALQET 140
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVP 210
F FG+++ K+ D NG+SKG+GF+QF + +AA+ AI +NG +I FV
Sbjct: 141 FASFGSVLSCKVAVDNNGQSKGYGFVQFENEEAAQSAINRLNGMLINDKEVFV------- 193
Query: 211 GKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KH 265
G+ V + + + ++V NL ++ + ++ F+ +G ITS+ ++ D K
Sbjct: 194 GRFVRHQERIEATGSPKFTNVYVKNLSETTSDEDLKKFFSNYGAITSAIVMKDQSGKSKG 253
Query: 266 IGFIEFIMPKHATHAVSTMNGHVFKSK 292
GF+ F P A AV +NG F K
Sbjct: 254 FGFVNFQSPDSAAAAVEKLNGTTFNDK 280
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 107/202 (52%), Gaps = 14/202 (6%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
++V NL + ++ L F +G + V ++++ +S+GF + F +P A A ++N
Sbjct: 214 VYVKNLSETTSDEDLKKFFSNYGAITSAIVMKDQSGKSKGFGFVNFQSPDSAAAAVEKLN 273
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQ-----YKKDK---VFVKNLVETVDEEELK 148
G K + + K G+R + +Q Y+K K +++KNL + +D+E+LK
Sbjct: 274 GTTFNDKVWYVGRAQRK-GEREAELKARFEQERNSRYEKLKAANLYLKNLDDKIDDEKLK 332
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEI 208
F +FG+I K++ D+ G SKG GF+ F + + A +A+ MNG+MI +V++A+
Sbjct: 333 ELFSEFGSITSCKVMLDQQGLSKGSGFVAFSTPEEASRALNGMNGKMIGKKPLYVAVAQR 392
Query: 209 VPGKKV-----FPKVKPPLLQP 225
+K F +++ P L P
Sbjct: 393 REERKARLQAHFTQIQAPGLSP 414
>gi|13560783|gb|AAK30205.1|AF349964_1 poly(A)-binding protein [Daucus carota]
Length = 658
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 83/276 (30%), Positives = 148/276 (53%), Gaps = 15/276 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S+D +AL F FGT+ ++A + + +S+G+ + +++ A+ A ++N
Sbjct: 130 IFIKNLDKSIDIKALHETFSSFGTIISCKIATDASGQSKGYGFVQYDSEEAAQTAIDKLN 189
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G L+ K V + K + S E + K + ++VKNL ++ E++L+ F ++G
Sbjct: 190 GMLMNDKQVYVGVFLRKQDRDS-----EMSKTKFNNIYVKNLSDSTSEDDLRKTFGEYGT 244
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEI-----VPG 211
I V ++RD +GKSK FGF+ F + + A KA+ +NG+ +V A+ V
Sbjct: 245 ITSVVVMRDADGKSKCFGFVNFENPEDAAKAVDALNGKKFDDKEWYVGKAQKKSEREVEL 304
Query: 212 KKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHI 266
K F + + + ++V NL I++ + +ELF+ +GTITS ++ D +
Sbjct: 305 KSRFEQTVKEQVDKYQGVNLYVKNLDDTIDDEKLKELFSEYGTITSCKVMRDPSGISRGS 364
Query: 267 GFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ F P+ A+ A+ MNG + SKPL V L+ K
Sbjct: 365 GFVAFSTPEEASRALGEMNGKMIVSKPLYVALAQRK 400
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/267 (28%), Positives = 130/267 (48%), Gaps = 22/267 (8%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKK 90
+ L+V +L+ SV + L + F + G + VRV R+ S G+ + ++ +A +
Sbjct: 37 FTTTSLYVGDLDQSVTDSQLYDLFNQVGQVVSVRVCRDLSTGRSLGYGYVNYSNQQDATR 96
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A +N + +K + ++ P R G +F+KNL +++D + L
Sbjct: 97 AIDVLNFTPLNNKTIRVSVSRRDPTDRKSGAG---------NIFIKNLDKSIDIKALHET 147
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVP 210
F FG II KI D +G+SKG+GF+Q+ S +AA+ AI ++NG ++ +V
Sbjct: 148 FSSFGTIISCKIATDASGQSKGYGFVQYDSEEAAQTAIDKLNGMLMNDKQVYV------- 200
Query: 211 GKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KH 265
G + + + + + N I+V NL + + + + F +GTITS ++ D K
Sbjct: 201 GVFLRKQDRDSEMSKTKFNNIYVKNLSDSTSEDDLRKTFGEYGTITSVVVMRDADGKSKC 260
Query: 266 IGFIEFIMPKHATHAVSTMNGHVFKSK 292
GF+ F P+ A AV +NG F K
Sbjct: 261 FGFVNFENPEDAAKAVDALNGKKFDDK 287
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/183 (33%), Positives = 100/183 (54%), Gaps = 9/183 (4%)
Query: 33 KENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKAR 92
K N ++V NL S L F ++GT+ V V R+ + +S+ F + F P +A KA
Sbjct: 217 KFNNIYVKNLSDSTSEDDLRKTFGEYGTITSVVVMRDADGKSKCFGFVNFENPEDAAKAV 276
Query: 93 VEMNGHLIGSKPVII--------TFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDE 144
+NG K + VELK + + V + +Y+ ++VKNL +T+D+
Sbjct: 277 DALNGKKFDDKEWYVGKAQKKSEREVELK-SRFEQTVKEQVDKYQGVNLYVKNLDDTIDD 335
Query: 145 EELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVS 204
E+LK F ++G I K++RD +G S+G GF+ F + + A +A+ EMNG+MI +V+
Sbjct: 336 EKLKELFSEYGTITSCKVMRDPSGISRGSGFVAFSTPEEASRALGEMNGKMIVSKPLYVA 395
Query: 205 LAE 207
LA+
Sbjct: 396 LAQ 398
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 56/94 (59%)
Query: 26 KENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTP 85
KE Y+ L+V NL+ ++D++ L F ++GT+ +V R+ + SRG + F+TP
Sbjct: 313 KEQVDKYQGVNLYVKNLDDTIDDEKLKELFSEYGTITSCKVMRDPSGISRGSGFVAFSTP 372
Query: 86 AEAKKARVEMNGHLIGSKPVIITFVELKPGQRSK 119
EA +A EMNG +I SKP+ + + K +R++
Sbjct: 373 EEASRALGEMNGKMIVSKPLYVALAQRKEERRAR 406
>gi|302754900|ref|XP_002960874.1| hypothetical protein SELMODRAFT_21095 [Selaginella moellendorffii]
gi|302767436|ref|XP_002967138.1| hypothetical protein SELMODRAFT_10868 [Selaginella moellendorffii]
gi|300165129|gb|EFJ31737.1| hypothetical protein SELMODRAFT_10868 [Selaginella moellendorffii]
gi|300171813|gb|EFJ38413.1| hypothetical protein SELMODRAFT_21095 [Selaginella moellendorffii]
Length = 619
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 87/280 (31%), Positives = 146/280 (52%), Gaps = 26/280 (9%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ ++DN+AL + F FG + +VA + N +S+G+ + F A+ A ++N
Sbjct: 94 IFIKNLDRAIDNKALHDTFVSFGNILSCKVATDSNGQSKGYGFVQFEQEESAQVAIDKVN 153
Query: 97 GHLIGSKPVII-TFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
G L+ K V + FV + E+ K + VFVKNL E+ ++ELK F FG
Sbjct: 154 GMLVAEKQVFVGPFVRRQE---------REQNGKFNNVFVKNLGESTTDDELKEVFGAFG 204
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
I ++RD +GKSK FGF+ F + A KA++ +NG+ I+ +V A+ ++
Sbjct: 205 KITSAVVMRDSDGKSKCFGFVNFENPDEAAKAVVGLNGKKIEDKEWYVGRAQKKSEREAE 264
Query: 216 PKVKPPLLQPARKNKI--------FVANLPSNINNSEFEELFARFGTITSSSLVSD---- 263
+ K + RK +I ++ NL ++++ E+FA FG+ITS ++ D
Sbjct: 265 LRAK---YEQERKERIDRYQGANLYLKNLDDDVDDERLREIFADFGSITSCKVMRDAQGQ 321
Query: 264 -KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
K GF+ + P+ A A MNG + SKP+ V ++ K
Sbjct: 322 SKGSGFVAYSAPEEANRATIEMNGKMIGSKPIYVAMAQRK 361
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 81/262 (30%), Positives = 128/262 (48%), Gaps = 25/262 (9%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L+P+V L + F + G + +RV R+ S G+A + +N +A +A +
Sbjct: 6 LYVGDLDPNVSENQLYDLFNQIGQVLSIRVCRDLMTRRSLGYAYVNYNNVQDATRALELL 65
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N + K V I F P R +F+KNL +D + L F+ FG
Sbjct: 66 NFTPVNGKAVRIMFSHRDPSIRKSGTA---------NIFIKNLDRAIDNKALHDTFVSFG 116
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ D NG+SKG+GF+QF ++A+ AI ++NG ++ FV G V
Sbjct: 117 NILSCKVATDSNGQSKGYGFVQFEQEESAQVAIDKVNGMLVAEKQVFV-------GPFVR 169
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIE 270
+ + Q + N +FV NL + + E +E+F FG ITS+ ++ D K GF+
Sbjct: 170 RQERE---QNGKFNNVFVKNLGESTTDDELKEVFGAFGKITSAVVMRDSDGKSKCFGFVN 226
Query: 271 FIMPKHATHAVSTMNGHVFKSK 292
F P A AV +NG + K
Sbjct: 227 FENPDEAAKAVVGLNGKKIEDK 248
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 102/193 (52%), Gaps = 11/193 (5%)
Query: 23 RSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVF 82
R +E N K N + V NL S + L F FG + V R+ + +S+ F + F
Sbjct: 170 RQEREQNG--KFNNVFVKNLGESTTDDELKEVFGAFGKITSAVVMRDSDGKSKCFGFVNF 227
Query: 83 NTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKV--------F 134
P EA KA V +NG I K + + K +R + + +Q +K+++ +
Sbjct: 228 ENPDEAAKAVVGLNGKKIEDKEWYVGRAQ-KKSEREAELRAKYEQERKERIDRYQGANLY 286
Query: 135 VKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGR 194
+KNL + VD+E L+ F FG+I K++RD G+SKG GF+ + + + A +A IEMNG+
Sbjct: 287 LKNLDDDVDDERLREIFADFGSITSCKVMRDAQGQSKGSGFVAYSAPEEANRATIEMNGK 346
Query: 195 MIQHNSTFVSLAE 207
MI +V++A+
Sbjct: 347 MIGSKPIYVAMAQ 359
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 55/94 (58%)
Query: 26 KENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTP 85
KE Y+ L++ NL+ VD++ L F FG++ +V R+ +S+G + ++ P
Sbjct: 274 KERIDRYQGANLYLKNLDDDVDDERLREIFADFGSITSCKVMRDAQGQSKGSGFVAYSAP 333
Query: 86 AEAKKARVEMNGHLIGSKPVIITFVELKPGQRSK 119
EA +A +EMNG +IGSKP+ + + K +R+K
Sbjct: 334 EEANRATIEMNGKMIGSKPIYVAMAQRKEERRAK 367
>gi|297847300|ref|XP_002891531.1| PAB8 binding protein 8 [Arabidopsis lyrata subsp. lyrata]
gi|297337373|gb|EFH67790.1| PAB8 binding protein 8 [Arabidopsis lyrata subsp. lyrata]
Length = 669
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 91/277 (32%), Positives = 150/277 (54%), Gaps = 17/277 (6%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S+D++AL F FG + +VA + + +S+G+ + ++T A++A ++N
Sbjct: 129 IFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQRAIDKLN 188
Query: 97 GHLIGSKPVII-TFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
G L+ K V + FV QR P ++ K V+VKNL E++ +EEL F +FG
Sbjct: 189 GMLLNDKQVYVGPFVHKL--QRD----PSGEKVKFTNVYVKNLSESLSDEELNKVFGEFG 242
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
I+RD GKSKGFGF+ F + A +A+ +NG+ FV A+ ++
Sbjct: 243 VTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDALNGKTFDDKEWFVGKAQKKSERETE 302
Query: 216 PKVK--PPLLQPARKNK---IFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KH 265
K K L + A K++ ++V NL ++ + + E FA FGTITS ++ D +
Sbjct: 303 LKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPTGVSRG 362
Query: 266 IGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ F P+ A+ A++ MNG + +KPL V L+ K
Sbjct: 363 SGFVAFSTPEEASRAITEMNGKMIVTKPLYVALAQRK 399
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 73/262 (27%), Positives = 129/262 (49%), Gaps = 22/262 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDE-SRGFAIIVFNTPAEAKKARVEM 95
L+V +L+ +V + L F + G + VRV R+ S G+ + + TP +A +A E+
Sbjct: 41 LYVGDLDATVTDSQLFEAFSQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNEL 100
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N + + + + + P R VG +F+KNL +++D + L F FG
Sbjct: 101 NFMALNGRAIRVMYSVRDPSLRKSGVG---------NIFIKNLDKSIDHKALHETFSAFG 151
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
I+ K+ D +G+SKG+GF+Q+ + +AA++AI ++NG ++ +V G V
Sbjct: 152 PILSCKVAVDPSGQSKGYGFVQYDTDEAAQRAIDKLNGMLLNDKQVYV-------GPFVH 204
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIE 270
+ P + + ++V NL ++++ E ++F FG TS ++ D K GF+
Sbjct: 205 KLQRDPSGEKVKFTNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVN 264
Query: 271 FIMPKHATHAVSTMNGHVFKSK 292
F A AV +NG F K
Sbjct: 265 FENSDDAARAVDALNGKTFDDK 286
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 105/202 (51%), Gaps = 12/202 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
++V NL S+ ++ L F +FG + R+ +S+GF + F +A +A +N
Sbjct: 220 VYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDALN 279
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKK--DK-----VFVKNLVETVDEEELKS 149
G K + + K + ++ E+ K+ DK ++VKNL E+V +++L+
Sbjct: 280 GKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKLRE 339
Query: 150 HFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIV 209
HF FG I K++RD G S+G GF+ F + + A +AI EMNG+MI +V+LA+
Sbjct: 340 HFAPFGTITSCKVMRDPTGVSRGSGFVAFSTPEEASRAITEMNGKMIVTKPLYVALAQRK 399
Query: 210 PGKKV-----FPKVKPPLLQPA 226
+K F +++P + PA
Sbjct: 400 EDRKARLQAQFSQMRPVNMPPA 421
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 84/181 (46%), Gaps = 27/181 (14%)
Query: 127 QYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRD-ENGKSKGFGFIQFFSYKAAE 185
Q ++V +L TV + +L F + G ++ V++ RD +S G+G++ + + + A
Sbjct: 35 QQGTTSLYVGDLDATVTDSQLFEAFSQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDAS 94
Query: 186 KAIIEMN-----GRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNI 240
+A+ E+N GR I +V V+ P L+ + IF+ NL +I
Sbjct: 95 RALNELNFMALNGRAI----------------RVMYSVRDPSLRKSGVGNIFIKNLDKSI 138
Query: 241 NNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLK 295
++ E F+ FG I S + D K GF+++ + A A+ +NG + K +
Sbjct: 139 DHKALHETFSAFGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQRAIDKLNGMLLNDKQVY 198
Query: 296 V 296
V
Sbjct: 199 V 199
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 54/97 (55%)
Query: 23 RSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVF 82
+S KE + + L+V NL+ SV + L F FGT+ +V R+ SRG + F
Sbjct: 309 QSLKEAADKSQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPTGVSRGSGFVAF 368
Query: 83 NTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSK 119
+TP EA +A EMNG +I +KP+ + + K ++++
Sbjct: 369 STPEEASRAITEMNGKMIVTKPLYVALAQRKEDRKAR 405
>gi|225678061|gb|EEH16345.1| polyadenylate-binding protein [Paracoccidioides brasiliensis Pb03]
Length = 755
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 91/293 (31%), Positives = 138/293 (47%), Gaps = 26/293 (8%)
Query: 14 EGISD-DEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-N 71
EG +D +E S N L+V L+PSV L F G + +RV R+
Sbjct: 32 EGAADGNETPNSAAPTNAQPHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVT 91
Query: 72 DESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKD 131
S G+A + +N A+ ++A ++N LI KP I + + P R G
Sbjct: 92 RRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQG--------- 142
Query: 132 KVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEM 191
VF+KNL +D + L F FGNI+ K+ +DE G SKG+GF+ + + +AA AI +
Sbjct: 143 NVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAATNAIKHV 202
Query: 192 NGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKN--KIFVANLPSNINNSEFEELF 249
NG ++ FV G + K + + + N ++V NL + N EF ELF
Sbjct: 203 NGMLLNEKKVFV-------GHHIAKKDRQSKFEEMKANFTNVYVKNLEPEVTNEEFRELF 255
Query: 250 ARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
++G ITS+SL D + GF+ F+ A AV +N +K + L V
Sbjct: 256 EKYGEITSASLSRDNETGKSRGFGFVNFVNHDSAAAAVEDLNDKEYKGQKLYV 308
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 75/266 (28%), Positives = 133/266 (50%), Gaps = 19/266 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK W + D R + N + + NL+ ++DN+AL + F FG +
Sbjct: 121 KGKPCRIMWSQ---RDPALRKTGQGN-------VFIKNLDTAIDNKALHDTFAAFGNILS 170
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+VA+++ S+G+ + + T A A +NG L+ K V + K ++SK
Sbjct: 171 CKVAQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKF--- 227
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRD-ENGKSKGFGFIQFFSYK 182
EE + V+VKNL V EE + F K+G I + RD E GKS+GFGF+ F ++
Sbjct: 228 EEMKANFTNVYVKNLEPEVTNEEFRELFEKYGEITSASLSRDNETGKSRGFGFVNFVNHD 287
Query: 183 AAEKAIIEMNGRMIQHNSTFVSLAEIVPGK--KVFPKVKPPLLQPARKNK---IFVANLP 237
+A A+ ++N + + +V A+ + ++ + + ++ A K + ++V NL
Sbjct: 288 SAAAAVEDLNDKEYKGQKLYVGRAQKKHEREEELRKQHEAARVEKASKYQGVNLYVKNLT 347
Query: 238 SNINNSEFEELFARFGTITSSSLVSD 263
+I++ + +LF FG ITS+ ++ D
Sbjct: 348 DDIDDEKLRDLFIGFGNITSARVMRD 373
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/234 (26%), Positives = 97/234 (41%), Gaps = 64/234 (27%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVAR-NKNDESRGFAIIVFNTPAEAKKARVEM 95
++V NLEP V N+ F+K+G + ++R N+ +SRGF + F A A ++
Sbjct: 237 VYVKNLEPEVTNEEFRELFEKYGEITSASLSRDNETGKSRGFGFVNFVNHDSAAAAVEDL 296
Query: 96 NGHLIGSKPVIITFV--------ELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEEL 147
N + + + EL+ + V K Y+ ++VKNL + +D+E+L
Sbjct: 297 NDKEYKGQKLYVGRAQKKHEREEELRKQHEAARVEKASK-YQGVNLYVKNLTDDIDDEKL 355
Query: 148 KSHFIKFGNIIEVKI-------------------------VRDEN--------------- 167
+ FI FGNI ++ VR+E
Sbjct: 356 RDLFIGFGNITSARVMRDTIGDAGSESEKEKEASKDNKENVREETKKEAGGEDSAEKTDK 415
Query: 168 --------------GKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
GKSKGFGF+ F + A KA+ EMN RM+ +V+LA+
Sbjct: 416 AEKPDTKKPTDKKLGKSKGFGFVCFSNPDEASKAVTEMNQRMVNGKPLYVALAQ 469
Score = 39.7 bits (91), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 27/46 (58%)
Query: 74 SRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSK 119
S+GF + F+ P EA KA EMN ++ KP+ + + K ++S+
Sbjct: 432 SKGFGFVCFSNPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRKSQ 477
>gi|268581545|ref|XP_002645756.1| C. briggsae CBR-PAB-2 protein [Caenorhabditis briggsae]
Length = 685
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 92/310 (29%), Positives = 154/310 (49%), Gaps = 25/310 (8%)
Query: 5 GKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDV 64
G+ + W + D AR N + + NL+ +DN+++ + F FG +
Sbjct: 120 GRPMRIMWSQ---RDPAARRAGNGN-------IFIKNLDRVIDNKSIYDTFSLFGNILSC 169
Query: 65 RVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPE 124
+VA +++ SRG+ + F T A+ A ++NG L+ K V + + + QR K +G
Sbjct: 170 KVAADEDGSSRGYGFVHFETEESAQIAIEKVNGMLLSGKKVYVGKFQTR-AQRLKELG-- 226
Query: 125 EKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAA 184
E K VFVKN E +D+E+L F K+G I ++ D +GK KGFGF+ + AA
Sbjct: 227 ESGLKYTNVFVKNFGEHLDQEKLTKMFSKYGEITSAVVMTDADGKPKGFGFVAYADPDAA 286
Query: 185 EKAIIEMNGRMIQHNSTFVSLAE-------IVPGKKVFPKVKPPLLQPARKNKIFVANLP 237
+KA+ ++N + ++ +S+ K+ + +K +Q + ++V N+
Sbjct: 287 QKAVDDLNEKTLEGTDLKLSVCRAQKKSERTADLKRKYEALKQERVQRYQGVNLYVKNID 346
Query: 238 SNINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSK 292
+ + FA FGTITS+ ++ D K GF+ F P+ AT AV+ MN + SK
Sbjct: 347 EELTDEGLRAHFASFGTITSAKVMVDENGRSKGFGFVCFEKPEEATAAVTEMNSKMMGSK 406
Query: 293 PLKVTLSGTK 302
PL V L+ K
Sbjct: 407 PLYVALAQRK 416
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 73/277 (26%), Positives = 134/277 (48%), Gaps = 20/277 (7%)
Query: 29 NKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVAR-NKNDESRGFAIIVFNTPAE 87
N Y L++ +L V L +F G + +RV R N + S G+A + F PA+
Sbjct: 46 NATYSMASLYIGDLHGDVTESMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPAD 105
Query: 88 AKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEEL 147
A++A MN I +P+ I + + P R G +F+KNL +D + +
Sbjct: 106 AERALDTMNFETIHGRPMRIMWSQRDPAARRAGNG---------NIFIKNLDRVIDNKSI 156
Query: 148 KSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
F FGNI+ K+ DE+G S+G+GF+ F + ++A+ AI ++NG ++ +V +
Sbjct: 157 YDTFSLFGNILSCKVAADEDGSSRGYGFVHFETEESAQIAIEKVNGMLLSGKKVYVGKFQ 216
Query: 208 IVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD---- 263
++K + +FV N +++ + ++F+++G ITS+ +++D
Sbjct: 217 TRA-----QRLKELGESGLKYTNVFVKNFGEHLDQEKLTKMFSKYGEITSAVVMTDADGK 271
Query: 264 -KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299
K GF+ + P A AV +N + LK+++
Sbjct: 272 PKGFGFVAYADPDAAQKAVDDLNEKTLEGTDLKLSVC 308
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 52/94 (55%)
Query: 26 KENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTP 85
+E + Y+ L+V N++ + ++ L F FGT+ +V ++N S+GF + F P
Sbjct: 329 QERVQRYQGVNLYVKNIDEELTDEGLRAHFASFGTITSAKVMVDENGRSKGFGFVCFEKP 388
Query: 86 AEAKKARVEMNGHLIGSKPVIITFVELKPGQRSK 119
EA A EMN ++GSKP+ + + K +R++
Sbjct: 389 EEATAAVTEMNSKMMGSKPLYVALAQRKEDRRAQ 422
>gi|321466794|gb|EFX77787.1| polyadenylate binding protein, cytoplasmic 1 [Daphnia pulex]
Length = 574
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 83/277 (29%), Positives = 150/277 (54%), Gaps = 15/277 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ ++DN+A+ + F FG + +VA+++ S+G+ + F T A A ++N
Sbjct: 102 IFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDEAGNSKGYGFVHFETEESAVNAITKVN 161
Query: 97 GHLIGSKPVII-TFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
G L+ K V + F+ K R + +G + K + V++KN + D+E+L F K+G
Sbjct: 162 GMLLNGKKVFVGRFIPRK--DRERELGEKAKYFTN--VYIKNFGDEFDDEKLFECFSKYG 217
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVP 210
+ K++ ++GKS+GFGF+ + AAE+A +M+ + + + FV A+
Sbjct: 218 KVTSHKVMSSDDGKSRGFGFVCYEDPDAAERACDDMHAKDMNGKTLFVGRAQKRNERQTE 277
Query: 211 GKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKH----- 265
++ F ++K L + ++V NL I++ + FA +GTITS+ ++++
Sbjct: 278 LRRKFEQMKIERLNRYQGVNLYVKNLDDTIDDERLRKEFAPYGTITSAKVMTEGGRNKGG 337
Query: 266 IGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ F P+ AT AV+ MNG + SKPL V L+ K
Sbjct: 338 FGFVCFSSPEEATKAVTEMNGRILVSKPLYVALAQRK 374
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 74/267 (27%), Positives = 129/267 (48%), Gaps = 22/267 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L V L +F G + +RV R+ S G+A + F PA+A++A M
Sbjct: 14 LYVGDLHNEVTEAMLFEKFSTAGPVVSIRVCRDMITRRSLGYAYVNFQQPADAERALDSM 73
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N ++ +P+ I + + P R VG +F+KNL +T+D + + F FG
Sbjct: 74 NFDVLRGRPIRIMWSQRDPSLRRSGVG---------NIFIKNLDKTIDNKAMYDTFSAFG 124
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ +DE G SKG+GF+ F + ++A AI ++NG ++ FV +P K
Sbjct: 125 NILSCKVAQDEAGNSKGYGFVHFETEESAVNAITKVNGMLLNGKKVFV--GRFIPRK--- 179
Query: 216 PKVKPPLLQPARK-NKIFVANLPSNINNSEFEELFARFGTITSSSLVS-----DKHIGFI 269
+ L + A+ +++ N ++ + E F+++G +TS ++S + GF+
Sbjct: 180 -DRERELGEKAKYFTNVYIKNFGDEFDDEKLFECFSKYGKVTSHKVMSSDDGKSRGFGFV 238
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKV 296
+ P A A M+ K L V
Sbjct: 239 CYEDPDAAERACDDMHAKDMNGKTLFV 265
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 50/88 (56%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L+V NL+ ++D++ L EF +GT+ +V GF + F++P EA KA
Sbjct: 293 YQGVNLYVKNLDDTIDDERLRKEFAPYGTITSAKVMTEGGRNKGGFGFVCFSSPEEATKA 352
Query: 92 RVEMNGHLIGSKPVIITFVELKPGQRSK 119
EMNG ++ SKP+ + + K ++++
Sbjct: 353 VTEMNGRILVSKPLYVALAQRKEDRKAQ 380
>gi|389629168|ref|XP_003712237.1| polyadenylate-binding protein [Magnaporthe oryzae 70-15]
gi|158514092|sp|A4QUF0.1|PABP_MAGO7 RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|351644569|gb|EHA52430.1| polyadenylate-binding protein [Magnaporthe oryzae 70-15]
gi|440469069|gb|ELQ38192.1| polyadenylate-binding protein [Magnaporthe oryzae Y34]
gi|440487573|gb|ELQ67355.1| polyadenylate-binding protein [Magnaporthe oryzae P131]
Length = 762
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 87/270 (32%), Positives = 135/270 (50%), Gaps = 27/270 (10%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+PSV L F + G++ +RV R+ S G+A + +NT A+ +KA E+
Sbjct: 63 LYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEEL 122
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI +P I + + P R G VF+KNL +D + L F FG
Sbjct: 123 NYTLIKGRPCRIMWSQRDPALRKTGQG---------NVFIKNLDVAIDNKALHDTFAAFG 173
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKV- 214
NI+ K+ +DENG SKG+GF+ + + +AA +AI +NG ++ +V +P K
Sbjct: 174 NILSCKVAQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYV--GHHIPKKDRQ 231
Query: 215 --FPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKH------I 266
F ++K A I+V N+ + + EF LF ++G +TSSSL D+
Sbjct: 232 SKFDEMK------ANFTNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGF 285
Query: 267 GFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
GF+ F + A+ AV +N F + L V
Sbjct: 286 GFVNFTSHEDASKAVQELNEKEFHGQNLYV 315
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 81/325 (24%), Positives = 146/325 (44%), Gaps = 67/325 (20%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ ++DN+AL + F FG + +VA+++N S+G+ + + T A +A +NG
Sbjct: 153 IKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYETDEAASQAIKHVNGM 212
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ K V + K ++SK +E + ++VKN+ V ++E ++ F K+G++
Sbjct: 213 LLNEKKVYVGHHIPKKDRQSK---FDEMKANFTNIYVKNINPEVTDDEFRTLFEKYGDVT 269
Query: 159 EVKIVRD-ENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLA--------EIV 209
+ RD E GKS+GFGF+ F S++ A KA+ E+N + + +V A E+
Sbjct: 270 SSSLARDQETGKSRGFGFVNFTSHEDASKAVQELNEKEFHGQNLYVGRAQKKHEREEEL- 328
Query: 210 PGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDK----- 264
+K + + + +++ NL +++ + +LF+ FG ITS+ ++ D
Sbjct: 329 --RKSYEAARQEKASKYQGVNLYIKNLDDEVDDEKLRQLFSEFGPITSAKVMRDSITEPG 386
Query: 265 -----------------------------------------------HIGFIEFIMPKHA 277
GF+ F P A
Sbjct: 387 EEGESKEGEESEKNKENKPEEKEGDDSKPEEKEGEDSKSKSKLGKSKGFGFVCFANPDDA 446
Query: 278 THAVSTMNGHVFKSKPLKVTLSGTK 302
T AV+ MN + +KPL V L+ K
Sbjct: 447 TKAVAEMNQRMVNNKPLYVALAQRK 471
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/226 (25%), Positives = 99/226 (43%), Gaps = 55/226 (24%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
++V N+ P V + F+K+G + +AR++ +SRGF + F + +A KA E+
Sbjct: 244 IYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQEL 303
Query: 96 NGHLIGSKPVIITFVELKPG-----QRSKPVGPEEK--QYKKDKVFVKNLVETVDEEELK 148
N + + + + K ++S +EK +Y+ +++KNL + VD+E+L+
Sbjct: 304 NEKEFHGQNLYVGRAQKKHEREEELRKSYEAARQEKASKYQGVNLYIKNLDDEVDDEKLR 363
Query: 149 SHFIKFGNIIEVKIVRD----------------------------ENGKSK--------- 171
F +FG I K++RD E SK
Sbjct: 364 QLFSEFGPITSAKVMRDSITEPGEEGESKEGEESEKNKENKPEEKEGDDSKPEEKEGEDS 423
Query: 172 ----------GFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
GFGF+ F + A KA+ EMN RM+ + +V+LA+
Sbjct: 424 KSKSKLGKSKGFGFVCFANPDDATKAVAEMNQRMVNNKPLYVALAQ 469
>gi|18402769|ref|NP_564554.1| poly(A) binding protein 8 [Arabidopsis thaliana]
gi|334183191|ref|NP_001185184.1| poly(A) binding protein 8 [Arabidopsis thaliana]
gi|10120431|gb|AAG13056.1|AC011807_15 Putative Poly-A Binding Protein [Arabidopsis thaliana]
gi|13877633|gb|AAK43894.1|AF370517_1 Putative Poly-A Binding Protein [Arabidopsis thaliana]
gi|17978685|gb|AAL47336.1| putative Poly-A Binding Protein [Arabidopsis thaliana]
gi|332194351|gb|AEE32472.1| poly(A) binding protein 8 [Arabidopsis thaliana]
gi|332194352|gb|AEE32473.1| poly(A) binding protein 8 [Arabidopsis thaliana]
Length = 671
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 92/277 (33%), Positives = 149/277 (53%), Gaps = 17/277 (6%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S+D++AL F FG + +VA + + +S+G+ + ++T A+ A ++N
Sbjct: 135 IFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQGAIDKLN 194
Query: 97 GHLIGSKPVII-TFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
G L+ K V + FV QR P ++ K V+VKNL E++ +EEL F +FG
Sbjct: 195 GMLLNDKQVYVGPFVHKL--QRD----PSGEKVKFTNVYVKNLSESLSDEELNKVFGEFG 248
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
I+RD GKSKGFGF+ F + A +A+ +NG+ FV A+ ++
Sbjct: 249 VTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDALNGKTFDDKEWFVGKAQKKSERETE 308
Query: 216 PKVK--PPLLQPARKNK---IFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KH 265
K K L + A K++ ++V NL ++ + + E FA FGTITS ++ D +
Sbjct: 309 LKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPSGVSRG 368
Query: 266 IGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ F P+ AT A++ MNG + +KPL V L+ K
Sbjct: 369 SGFVAFSTPEEATRAITEMNGKMIVTKPLYVALAQRK 405
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 73/262 (27%), Positives = 128/262 (48%), Gaps = 22/262 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDE-SRGFAIIVFNTPAEAKKARVEM 95
L+V +L+ +V + L F + G + VRV R+ S G+ + + TP +A +A E+
Sbjct: 47 LYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNEL 106
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N + + + + + P R VG +F+KNL +++D + L F FG
Sbjct: 107 NFMALNGRAIRVMYSVRDPSLRKSGVG---------NIFIKNLDKSIDHKALHETFSAFG 157
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
I+ K+ D +G+SKG+GF+Q+ + +AA+ AI ++NG ++ +V G V
Sbjct: 158 PILSCKVAVDPSGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYV-------GPFVH 210
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIE 270
+ P + + ++V NL ++++ E ++F FG TS ++ D K GF+
Sbjct: 211 KLQRDPSGEKVKFTNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVN 270
Query: 271 FIMPKHATHAVSTMNGHVFKSK 292
F A AV +NG F K
Sbjct: 271 FENSDDAARAVDALNGKTFDDK 292
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 106/202 (52%), Gaps = 12/202 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
++V NL S+ ++ L F +FG + R+ +S+GF + F +A +A +N
Sbjct: 226 VYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDALN 285
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKK--DK-----VFVKNLVETVDEEELKS 149
G K + + K + ++ E+ K+ DK ++VKNL E+V +++L+
Sbjct: 286 GKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKLRE 345
Query: 150 HFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIV 209
HF FG I K++RD +G S+G GF+ F + + A +AI EMNG+MI +V+LA+
Sbjct: 346 HFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATRAITEMNGKMIVTKPLYVALAQRK 405
Query: 210 PGKKV-----FPKVKPPLLQPA 226
+K F +++P + PA
Sbjct: 406 EDRKARLQAQFSQMRPVNMPPA 427
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 84/181 (46%), Gaps = 27/181 (14%)
Query: 127 QYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRD-ENGKSKGFGFIQFFSYKAAE 185
Q ++V +L TV + +L F + G ++ V++ RD +S G+G++ + + + A
Sbjct: 41 QQGTTSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDAS 100
Query: 186 KAIIEMN-----GRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNI 240
+A+ E+N GR I +V V+ P L+ + IF+ NL +I
Sbjct: 101 RALNELNFMALNGRAI----------------RVMYSVRDPSLRKSGVGNIFIKNLDKSI 144
Query: 241 NNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLK 295
++ E F+ FG I S + D K GF+++ + A A+ +NG + K +
Sbjct: 145 DHKALHETFSAFGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVY 204
Query: 296 V 296
V
Sbjct: 205 V 205
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 55/97 (56%)
Query: 23 RSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVF 82
+S KE + + L+V NL+ SV + L F FGT+ +V R+ + SRG + F
Sbjct: 315 QSLKEAADKSQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPSGVSRGSGFVAF 374
Query: 83 NTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSK 119
+TP EA +A EMNG +I +KP+ + + K ++++
Sbjct: 375 STPEEATRAITEMNGKMIVTKPLYVALAQRKEDRKAR 411
>gi|397478151|ref|XP_003810419.1| PREDICTED: polyadenylate-binding protein 5-like [Pan paniscus]
Length = 382
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 88/285 (30%), Positives = 157/285 (55%), Gaps = 32/285 (11%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S+DN+AL F FG + +V + N S+G+A + F++ A A +A MN
Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMN 166
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G + ++ V + + P +R+ V ++ + VFVKN+ + +D+E+LK F ++G
Sbjct: 167 GVRLNNRQVYVGRFKF-PEERAAEVRTRDRATFTN-VFVKNIGDDIDDEKLKELFCEYGP 224
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF- 215
VK++RD +GKSKGFGF+++ +++AA+KA+++++G+ I +V A+ KK+
Sbjct: 225 TESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQ----KKIER 280
Query: 216 --------------PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLV 261
K +PP + I++ NL IN+ + +E F+ FG+I+ + ++
Sbjct: 281 LAELRRRFERLRLKEKSRPPGVP------IYIKNLDETINDEKLKEEFSSFGSISRAKVM 334
Query: 262 SD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
+ K G + F + A+ AV MNG + SKPL VTL +
Sbjct: 335 MEVGQGKGFGVVCFSSFEEASKAVDEMNGRIVGSKPLHVTLGQAR 379
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 80/267 (29%), Positives = 128/267 (47%), Gaps = 26/267 (9%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDES-RGFAIIVFNTPAEAKKARVEMNG 97
V +L+P V L +F+ G LR R+ R+ S G+ + F PA+A+ A MN
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 98 HLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNI 157
LI KP + + + R VG +F+KNL +++D L F FGNI
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVG---------NIFIKNLDKSIDNRALFYLFSAFGNI 132
Query: 158 IEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPK 217
+ K+V D+NG SKG+ ++ F S AA +AI MNG + + +V G+ FP+
Sbjct: 133 LSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYV-------GRFKFPE 184
Query: 218 VKPPLLQP---ARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFI 269
+ ++ A +FV N+ +I++ + +ELF +G S ++ D K GF+
Sbjct: 185 ERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFV 244
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKV 296
+ + A AV ++G K L V
Sbjct: 245 RYETHEAAQKAVLDLHGKSIDGKVLYV 271
>gi|356499763|ref|XP_003518706.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 646
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 89/288 (30%), Positives = 149/288 (51%), Gaps = 33/288 (11%)
Query: 34 ENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARV 93
+ + + NL+ ++D++AL + F FG + +VA + + +S+G+ + F+ A+KA
Sbjct: 115 QGNIFIKNLDRAIDHKALHDTFSTFGNILSCKVATDSSGQSKGYGFVQFDNEESAQKAIE 174
Query: 94 EMNGHLIGSKPVIITFVELKPGQRSKPVGP----EEKQYKKDK-----VFVKNLVETVDE 144
++NG L+ K V VGP +E++ DK VFVKNL E+ +
Sbjct: 175 KLNGMLLNDKQVY--------------VGPFLRKQERESTADKAKFNNVFVKNLSESTTD 220
Query: 145 EELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVS 204
+ELK+ F +FG I ++RD +GKSK FGF+ F + A +A+ +NG+ +V
Sbjct: 221 DELKNVFGEFGTITSAVVMRDGDGKSKCFGFVNFENADDAARAVEALNGKKFDDKEWYVG 280
Query: 205 LAEIVPG-----KKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSS 259
A+ K+ F + + ++V NL ++ + + +ELF+ FGTITS
Sbjct: 281 KAQKKSERENELKQRFEQSMKEAADKYQGANLYVKNLDDSLGDDKLKELFSPFGTITSCK 340
Query: 260 LVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
++ D + GF+ F P A+ A+ MNG + SKPL VTL+ K
Sbjct: 341 VMRDPNGISRGSGFVAFSTPDEASRALLEMNGKMVVSKPLYVTLAQRK 388
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 79/262 (30%), Positives = 133/262 (50%), Gaps = 22/262 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L+P+V + L + F + G + VRV R+ + S G+ + F+ P +A +A +
Sbjct: 30 LYVGDLDPNVTDAQLYDLFNQLGQVVSVRVCRDLTSRRSLGYGYVNFSNPQDAARALDVL 89
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N + ++P+ I + P R G +F+KNL +D + L F FG
Sbjct: 90 NFTPLNNRPIRIMYSHRDPSIRKSGQG---------NIFIKNLDRAIDHKALHDTFSTFG 140
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ D +G+SKG+GF+QF + ++A+KAI ++NG ++ +V G +
Sbjct: 141 NILSCKVATDSSGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYV-------GPFLR 193
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIE 270
+ + A+ N +FV NL + + E + +F FGTITS+ ++ D K GF+
Sbjct: 194 KQERESTADKAKFNNVFVKNLSESTTDDELKNVFGEFGTITSAVVMRDGDGKSKCFGFVN 253
Query: 271 FIMPKHATHAVSTMNGHVFKSK 292
F A AV +NG F K
Sbjct: 254 FENADDAARAVEALNGKKFDDK 275
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 96/184 (52%), Gaps = 11/184 (5%)
Query: 33 KENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKAR 92
K N + V NL S + L N F +FGT+ V R+ + +S+ F + F +A +A
Sbjct: 205 KFNNVFVKNLSESTTDDELKNVFGEFGTITSAVVMRDGDGKSKCFGFVNFENADDAARAV 264
Query: 93 VEMNGHLIGSKPVIITFV--------ELKPGQR-SKPVGPEEKQYKKDKVFVKNLVETVD 143
+NG K + ELK QR + + +Y+ ++VKNL +++
Sbjct: 265 EALNGKKFDDKEWYVGKAQKKSERENELK--QRFEQSMKEAADKYQGANLYVKNLDDSLG 322
Query: 144 EEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFV 203
+++LK F FG I K++RD NG S+G GF+ F + A +A++EMNG+M+ +V
Sbjct: 323 DDKLKELFSPFGTITSCKVMRDPNGISRGSGFVAFSTPDEASRALLEMNGKMVVSKPLYV 382
Query: 204 SLAE 207
+LA+
Sbjct: 383 TLAQ 386
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 57/97 (58%)
Query: 23 RSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVF 82
+S KE Y+ L+V NL+ S+ + L F FGT+ +V R+ N SRG + F
Sbjct: 298 QSMKEAADKYQGANLYVKNLDDSLGDDKLKELFSPFGTITSCKVMRDPNGISRGSGFVAF 357
Query: 83 NTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSK 119
+TP EA +A +EMNG ++ SKP+ +T + K +R++
Sbjct: 358 STPDEASRALLEMNGKMVVSKPLYVTLAQRKEDRRAR 394
>gi|453085206|gb|EMF13249.1| polyadenylate binding protein [Mycosphaerella populorum SO2202]
Length = 760
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 85/266 (31%), Positives = 132/266 (49%), Gaps = 20/266 (7%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+PSV L F G + +RV R+ S G+A + +N+ + ++A E+
Sbjct: 55 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSANDGERALEEL 114
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI KP I + + P R G +F+KNL +D + L F FG
Sbjct: 115 NYTLIKGKPCRIMWSQRDPALRKTGHG---------NIFIKNLDAAIDNKALHDTFAAFG 165
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ +DE+G S+G+GF+ + + +AA AI +NG ++ FV +P K
Sbjct: 166 NILSCKVAQDESGGSRGYGFVHYETAEAANAAIKSVNGMLLNEKKVFV--GHHIPKKDRM 223
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKH-----IGFIE 270
K + A I+V N+ + + EF ELF ++G ITS+SL D+ GF+
Sbjct: 224 SKFEE---MKANFTNIYVKNIDTETTDDEFRELFEKYGEITSASLARDQEGKVRGFGFVN 280
Query: 271 FIMPKHATHAVSTMNGHVFKSKPLKV 296
+I + A AV +N FKS+ L V
Sbjct: 281 YIRHEDANKAVDELNDIDFKSQKLYV 306
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 62/232 (26%), Positives = 120/232 (51%), Gaps = 8/232 (3%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ ++DN+AL + F FG + +VA++++ SRG+ + + T A A +N
Sbjct: 143 IFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDESGGSRGYGFVHYETAEAANAAIKSVN 202
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G L+ K V + K + SK EE + ++VKN+ ++E + F K+G
Sbjct: 203 GMLLNEKKVFVGHHIPKKDRMSKF---EEMKANFTNIYVKNIDTETTDDEFRELFEKYGE 259
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFP 216
I + RD+ GK +GFGF+ + ++ A KA+ E+N + +V A+ ++
Sbjct: 260 ITSASLARDQEGKVRGFGFVNYIRHEDANKAVDELNDIDFKSQKLYVGRAQKKHEREEEL 319
Query: 217 KVKPPLLQPARKNK-----IFVANLPSNINNSEFEELFARFGTITSSSLVSD 263
+ + + + K ++V NL +I++ E ++F +G+ITS+ ++ D
Sbjct: 320 RRQYEAQRQEKSAKYMGVNLYVKNLADDIDDEELRKVFEAYGSITSAKVMRD 371
Score = 41.6 bits (96), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 27/40 (67%)
Query: 168 GKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
GKSKGFGF+ F + A KA+ E+N +MI +V+LA+
Sbjct: 429 GKSKGFGFVCFSNPDEATKAVTELNQKMIHGKPLYVALAQ 468
>gi|392574075|gb|EIW67212.1| hypothetical protein TREMEDRAFT_40410 [Tremella mesenterica DSM
1558]
Length = 666
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 92/306 (30%), Positives = 152/306 (49%), Gaps = 23/306 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KG+ W + D R + N + + NL+ S+DN+AL + F FG +
Sbjct: 107 KGRPCRIMWSQ---RDPALRKTGQGN-------IFIKNLDESIDNKALHDTFAAFGEILS 156
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V +++ +SRGFA + + T A A ++G ++ K V FV G++ +
Sbjct: 157 CKVGVDEDGKSRGFAFVHYQTGEAADAAIKGVDGMMLNDKKV---FVGHHIGKKERQSKA 213
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
EE++ VFVKN+ +V E+E + KFG + + + DE GKSKGFGF+ + S++A
Sbjct: 214 EEQRAHFTNVFVKNVDLSVTEKEFEDLVSKFGETVSIALSLDEEGKSKGFGFVNYVSHEA 273
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
AEKA+ E+N + + + A+ +K + + + ++V NL
Sbjct: 274 AEKAVDELNDKEVNGQKLWAGRAQKRVERDTELRKTIEEKRQEFDAKSAGVNLYVKNLDD 333
Query: 239 NINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKP 293
++ F FGTITS ++ D ++ GF+ + P+ AT AVS MNG + SKP
Sbjct: 334 EWDDDRLRAEFDSFGTITSCKVMKDERGVSRNFGFVCYSSPEEATKAVSEMNGKMIGSKP 393
Query: 294 LKVTLS 299
L V L+
Sbjct: 394 LYVALA 399
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 74/257 (28%), Positives = 123/257 (47%), Gaps = 24/257 (9%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+PSV L F G + +RV R+ S G+A + + A+ ++A +
Sbjct: 42 LYVGELDPSVTEAMLFEIFNIIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEHL 101
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N I +P I + + P R G +F+KNL E++D + L F FG
Sbjct: 102 NYSAIKGRPCRIMWSQRDPALRKTGQG---------NIFIKNLDESIDNKALHDTFAAFG 152
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
I+ K+ DE+GKS+GF F+ + + +AA+ AI ++G M+ FV G +
Sbjct: 153 EILSCKVGVDEDGKSRGFAFVHYQTGEAADAAIKGVDGMMLNDKKVFV-------GHHIG 205
Query: 216 PKVKPPLLQPARKN--KIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGF 268
K + + R + +FV N+ ++ EFE+L ++FG S +L D K GF
Sbjct: 206 KKERQSKAEEQRAHFTNVFVKNVDLSVTEKEFEDLVSKFGETVSIALSLDEEGKSKGFGF 265
Query: 269 IEFIMPKHATHAVSTMN 285
+ ++ + A AV +N
Sbjct: 266 VNYVSHEAAEKAVDELN 282
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 100/201 (49%), Gaps = 26/201 (12%)
Query: 26 KENNKVYKENELH-----VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAII 80
KE +E H V N++ SV + + KFG + ++ ++ +S+GF +
Sbjct: 207 KERQSKAEEQRAHFTNVFVKNVDLSVTEKEFEDLVSKFGETVSIALSLDEEGKSKGFGFV 266
Query: 81 VFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP--------EEKQYKKDK 132
+ + A+KA E+N + + +L G+ K V EEK+ + D
Sbjct: 267 NYVSHEAAEKAVDELNDKEVNGQ-------KLWAGRAQKRVERDTELRKTIEEKRQEFDA 319
Query: 133 ------VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEK 186
++VKNL + D++ L++ F FG I K+++DE G S+ FGF+ + S + A K
Sbjct: 320 KSAGVNLYVKNLDDEWDDDRLRAEFDSFGTITSCKVMKDERGVSRNFGFVCYSSPEEATK 379
Query: 187 AIIEMNGRMIQHNSTFVSLAE 207
A+ EMNG+MI +V+LA+
Sbjct: 380 AVSEMNGKMIGSKPLYVALAQ 400
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 48/81 (59%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L+V NL+ D+ L EF FGT+ +V +++ SR F + +++P EA KA EMN
Sbjct: 326 LYVKNLDDEWDDDRLRAEFDSFGTITSCKVMKDERGVSRNFGFVCYSSPEEATKAVSEMN 385
Query: 97 GHLIGSKPVIITFVELKPGQR 117
G +IGSKP+ + + + +R
Sbjct: 386 GKMIGSKPLYVALAQRREARR 406
>gi|225557655|gb|EEH05941.1| polyadenylate-binding protein [Ajellomyces capsulatus G186AR]
gi|240278336|gb|EER41843.1| polyadenylate-binding protein [Ajellomyces capsulatus H143]
gi|325096361|gb|EGC49671.1| polyadenylate-binding protein [Ajellomyces capsulatus H88]
Length = 784
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 84/269 (31%), Positives = 133/269 (49%), Gaps = 25/269 (9%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+PSV L F G + +RV R+ S G+A + +N A+ ++A ++
Sbjct: 57 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 116
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI KP I + + P R G VF+KNL +D + L F FG
Sbjct: 117 NYTLIKGKPCRIMWSQRDPALRKTGQG---------NVFIKNLDTAIDNKALHDTFAAFG 167
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ +DE G SKG+GF+ + + +AA AI +NG ++ FV G +
Sbjct: 168 NILSCKVAQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFV-------GHHIA 220
Query: 216 PKVKPPLLQPARKN--KIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIG 267
K + + + N ++V NL + ++N EF ELF ++G ITS+S+ D + G
Sbjct: 221 KKDRQSKFEEMKANFTNVYVKNLDTEVSNEEFRELFEKYGEITSASISRDGETGKSRGFG 280
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
F+ F+ + A AV +N +K + L V
Sbjct: 281 FVNFVKHESAAAAVEELNDKEYKGQKLYV 309
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 77/266 (28%), Positives = 133/266 (50%), Gaps = 19/266 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK W + D R + N + + NL+ ++DN+AL + F FG +
Sbjct: 122 KGKPCRIMWSQ---RDPALRKTGQGN-------VFIKNLDTAIDNKALHDTFAAFGNILS 171
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+VA+++ S+G+ + + T A A +NG L+ K V + K ++SK
Sbjct: 172 CKVAQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSK---F 228
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRD-ENGKSKGFGFIQFFSYK 182
EE + V+VKNL V EE + F K+G I I RD E GKS+GFGF+ F ++
Sbjct: 229 EEMKANFTNVYVKNLDTEVSNEEFRELFEKYGEITSASISRDGETGKSRGFGFVNFVKHE 288
Query: 183 AAEKAIIEMNGRMIQHNSTFVSLAEIVPGK--KVFPKVKPPLLQPARKNK---IFVANLP 237
+A A+ E+N + + +V A+ + ++ + + ++ A K + ++V NL
Sbjct: 289 SAAAAVEELNDKEYKGQKLYVGRAQKKHEREEELRKQHEAARVEKASKYQGVNLYVKNLT 348
Query: 238 SNINNSEFEELFARFGTITSSSLVSD 263
+I++ + +LF FG ITS+ ++ D
Sbjct: 349 DDIDDEKLRDLFISFGNITSARVMRD 374
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 60/232 (25%), Positives = 97/232 (41%), Gaps = 62/232 (26%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKKARVEM 95
++V NL+ V N+ F+K+G + ++R+ + +SRGF + F A A E+
Sbjct: 238 VYVKNLDTEVSNEEFRELFEKYGEITSASISRDGETGKSRGFGFVNFVKHESAAAAVEEL 297
Query: 96 NGHLIGSKPVIITFV--------ELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEEL 147
N + + + EL+ + V K Y+ ++VKNL + +D+E+L
Sbjct: 298 NDKEYKGQKLYVGRAQKKHEREEELRKQHEAARVEKASK-YQGVNLYVKNLTDDIDDEKL 356
Query: 148 KSHFIKFGNIIEVKIVRD------------------EN---------------------- 167
+ FI FGNI +++RD EN
Sbjct: 357 RDLFISFGNITSARVMRDTAGDPGSESEKEKESANKENVKDEAKKESGEEDSADKSDKVE 416
Query: 168 ------------GKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
GKSKGFGF+ F + A KA+ EMN RM+ +V+LA+
Sbjct: 417 KSDSKNATEKKLGKSKGFGFVCFSNPDEASKAVTEMNQRMVNGKPLYVALAQ 468
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 49/115 (42%), Gaps = 2/115 (1%)
Query: 5 GKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDV 64
G I A + D G+ S KE KEN E ++ A ++ K
Sbjct: 364 GNITSARVMRDTAGDPGSESEKEKESANKENVKDEAKKESGEEDSA--DKSDKVEKSDSK 421
Query: 65 RVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSK 119
K +S+GF + F+ P EA KA EMN ++ KP+ + + K ++S+
Sbjct: 422 NATEKKLGKSKGFGFVCFSNPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRKSQ 476
>gi|45201218|ref|NP_986788.1| AGR122Cp [Ashbya gossypii ATCC 10895]
gi|74691820|sp|Q74ZS6.1|PABP_ASHGO RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|44986072|gb|AAS54612.1| AGR122Cp [Ashbya gossypii ATCC 10895]
gi|374110037|gb|AEY98942.1| FAGR122Cp [Ashbya gossypii FDAG1]
Length = 585
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 85/276 (30%), Positives = 145/276 (52%), Gaps = 13/276 (4%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+++ NL P++DN++L F FG + +VA ++N SRGF + F ++A+ A ++
Sbjct: 128 IYIKNLHPAIDNKSLHETFSTFGNILSCKVATDENGVSRGFGFVHFENESDARDAIEAVD 187
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G L+ + V + K ++SK EE + K V+VKN+ + +EE + F K+G
Sbjct: 188 GMLMNDQEVYVALHVSKKDRQSKL---EEVKAKFTNVYVKNIDQETSQEEFEELFGKYGK 244
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPG 211
I + +D GK +GFGF+ F + AA KA+ E+N + +V A+ +
Sbjct: 245 ITSAVLEKDSEGKLRGFGFVNFEDHAAAAKAVDELNELEFKGQKLYVGRAQKKYERLQEL 304
Query: 212 KKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHI 266
KK + + L + +FV NL +I++ + +E FA FGTITS+ ++ D +
Sbjct: 305 KKQYEAARLEKLAKYQGVNLFVKNLDDSIDDEKLKEEFAPFGTITSAKVMRDETGNSRGF 364
Query: 267 GFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ F P+ AT A++ N + KPL V ++ K
Sbjct: 365 GFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRK 400
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 84/268 (31%), Positives = 129/268 (48%), Gaps = 24/268 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V LEP+V L + F G++ +RV R+ + S G+A + F+ KA ++
Sbjct: 40 LYVGELEPTVSEALLYDIFSPIGSVSSIRVCRDAITNTSLGYAYVNFHDHEAGPKAIEQL 99
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI KP I + + P R K G +++KNL +D + L F FG
Sbjct: 100 NYTLIKGKPCRIMWSQRDPSLRKKGSG---------NIYIKNLHPAIDNKSLHETFSTFG 150
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ DENG S+GFGF+ F + A AI ++G ++ +V+L V
Sbjct: 151 NILSCKVATDENGVSRGFGFVHFENESDARDAIEAVDGMLMNDQEVYVAL-------HVS 203
Query: 216 PKVKPPLLQP--ARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGF 268
K + L+ A+ ++V N+ + EFEELF ++G ITS+ L D + GF
Sbjct: 204 KKDRQSKLEEVKAKFTNVYVKNIDQETSQEEFEELFGKYGKITSAVLEKDSEGKLRGFGF 263
Query: 269 IEFIMPKHATHAVSTMNGHVFKSKPLKV 296
+ F A AV +N FK + L V
Sbjct: 264 VNFEDHAAAAKAVDELNELEFKGQKLYV 291
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 51/88 (57%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L V NL+ S+D++ L EF FGT+ +V R++ SRGF + F+TP EA KA
Sbjct: 319 YQGVNLFVKNLDDSIDDEKLKEEFAPFGTITSAKVMRDETGNSRGFGFVCFSTPEEATKA 378
Query: 92 RVEMNGHLIGSKPVIITFVELKPGQRSK 119
E N ++ KP+ + + K +R++
Sbjct: 379 ITEKNQQIVAGKPLYVAIAQRKEVRRNQ 406
>gi|224085256|ref|XP_002307525.1| predicted protein [Populus trichocarpa]
gi|222856974|gb|EEE94521.1| predicted protein [Populus trichocarpa]
Length = 614
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 87/272 (31%), Positives = 144/272 (52%), Gaps = 17/272 (6%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+DN+AL F FG + +VA + N +S+G+ + F A+ A +NG
Sbjct: 115 IKNLDTSIDNKALQETFASFGPVLSCKVAVDNNGQSKGYGFVQFENEEAAQSAINRLNGM 174
Query: 99 LIGSKPVII-TFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNI 157
LI K V + FV + +R + G K V+VKNL ET +E+LK F +G+I
Sbjct: 175 LINDKEVFVGRFVRHQ--ERIEATGSP----KFTNVYVKNLSETTSDEDLKKFFSNYGSI 228
Query: 158 IEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEI-----VPGK 212
+++D++GKSKGFGF+ F S +A A+ ++NG +V A+ K
Sbjct: 229 TSAIVMKDQSGKSKGFGFVNFQSPDSAAAAVEKLNGTTFNDKVWYVGRAQRKGEREAELK 288
Query: 213 KVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIG 267
F + + + + +++ NL I++ + +ELF+ FG+ITS ++ D K G
Sbjct: 289 ARFEQERNSRYEKLKAANLYLKNLDDKIDDEKLKELFSEFGSITSCKVMLDQQGLSKGSG 348
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299
F+ F P+ A+ A++ MNG + KPL V ++
Sbjct: 349 FVAFSTPEEASRALNGMNGKMIGKKPLYVAVA 380
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 75/267 (28%), Positives = 129/267 (48%), Gaps = 22/267 (8%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
+ + L+V +LE +V+ L + F + + +RV R++ S G+A + F+ P +A
Sbjct: 20 FPNSSLYVGDLEHNVNEGQLFDLFSQVAQVVSIRVCRDQARRASLGYAYVNFSNPQDAAN 79
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A +N + K + I P R VF+KNL ++D + L+
Sbjct: 80 AMELLNFTPLNGKAIRIMVSHRDPSMRKS---------GHANVFIKNLDTSIDNKALQET 130
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVP 210
F FG ++ K+ D NG+SKG+GF+QF + +AA+ AI +NG +I FV
Sbjct: 131 FASFGPVLSCKVAVDNNGQSKGYGFVQFENEEAAQSAINRLNGMLINDKEVFV------- 183
Query: 211 GKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KH 265
G+ V + + + ++V NL ++ + ++ F+ +G+ITS+ ++ D K
Sbjct: 184 GRFVRHQERIEATGSPKFTNVYVKNLSETTSDEDLKKFFSNYGSITSAIVMKDQSGKSKG 243
Query: 266 IGFIEFIMPKHATHAVSTMNGHVFKSK 292
GF+ F P A AV +NG F K
Sbjct: 244 FGFVNFQSPDSAAAAVEKLNGTTFNDK 270
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 108/202 (53%), Gaps = 14/202 (6%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
++V NL + ++ L F +G++ V ++++ +S+GF + F +P A A ++N
Sbjct: 204 VYVKNLSETTSDEDLKKFFSNYGSITSAIVMKDQSGKSKGFGFVNFQSPDSAAAAVEKLN 263
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQ-----YKKDK---VFVKNLVETVDEEELK 148
G K + + K G+R + +Q Y+K K +++KNL + +D+E+LK
Sbjct: 264 GTTFNDKVWYVGRAQRK-GEREAELKARFEQERNSRYEKLKAANLYLKNLDDKIDDEKLK 322
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEI 208
F +FG+I K++ D+ G SKG GF+ F + + A +A+ MNG+MI +V++A+
Sbjct: 323 ELFSEFGSITSCKVMLDQQGLSKGSGFVAFSTPEEASRALNGMNGKMIGKKPLYVAVAQR 382
Query: 209 VPGKKV-----FPKVKPPLLQP 225
+K F +++ P L P
Sbjct: 383 REERKARLQAHFTQIQAPGLSP 404
>gi|308806325|ref|XP_003080474.1| polyadenylate-binding protein, putative / PABP, putative (ISS)
[Ostreococcus tauri]
gi|116058934|emb|CAL54641.1| polyadenylate-binding protein, putative / PABP, putative (ISS)
[Ostreococcus tauri]
Length = 504
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 86/276 (31%), Positives = 142/276 (51%), Gaps = 16/276 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ ++DN+AL++ F +FGT+ +VA + S+G+ + F T A+ A +N
Sbjct: 122 IFIKNLDKAIDNKALLDTFAQFGTITSAKVAMDSAGNSKGYGFVQFETAEAAQAAIDNVN 181
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G + K V + P QR + + + K + V+VKNL E + +E+L+ F + G
Sbjct: 182 GMELNDKQVYV-----GPFQR-RADRSTQGEAKFNNVYVKNLSENLSDEKLREKFAEHGA 235
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFP 216
+ I++DE GKSKGFGF+ F S + A A+ ++G + V A+ ++
Sbjct: 236 VTSCVIMKDEEGKSKGFGFVCFESPEGAASAVENLDGYTEDEKTWVVCRAQKKAEREAEL 295
Query: 217 KVKPPLLQPARKNK-----IFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHI 266
K K + R K +++ NL ++ + ELF FGTITS ++ D +
Sbjct: 296 KAKFEAERRERMEKMAGANLYIKNLEEGTDDEKLRELFNEFGTITSCRVMRDASGASRGS 355
Query: 267 GFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F+ F P AT AV+ MNG + +KPL V L+ K
Sbjct: 356 AFVAFSSPDEATRAVTEMNGKMVGAKPLYVALAQRK 391
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 78/269 (28%), Positives = 129/269 (47%), Gaps = 23/269 (8%)
Query: 35 NELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARV 93
+ L+V +LE SV L +F G + +RV R+ S G+A + F + ++A A
Sbjct: 32 SSLYVGDLETSVTEAQLYEKFSSIGPVVSIRVCRDLITRRSLGYAYVNFQSSSDAAHAID 91
Query: 94 EMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIK 153
+N +I KP+ + + + P R VG +F+KNL + +D + L F +
Sbjct: 92 VLNFQVINGKPIRVLYSQRDPAVRRSGVG---------NIFIKNLDKAIDNKALLDTFAQ 142
Query: 154 FGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKK 213
FG I K+ D G SKG+GF+QF + +AA+ AI +NG + +V P ++
Sbjct: 143 FGTITSAKVAMDSAGNSKGYGFVQFETAEAAQAAIDNVNGMELNDKQVYVG-----PFQR 197
Query: 214 VFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGF 268
+ A+ N ++V NL N+++ + E FA G +TS ++ D K GF
Sbjct: 198 ---RADRSTQGEAKFNNVYVKNLSENLSDEKLREKFAEHGAVTSCVIMKDEEGKSKGFGF 254
Query: 269 IEFIMPKHATHAVSTMNGHVFKSKPLKVT 297
+ F P+ A AV ++G+ K V
Sbjct: 255 VCFESPEGAASAVENLDGYTEDEKTWVVC 283
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 103/192 (53%), Gaps = 7/192 (3%)
Query: 23 RSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVF 82
R+++ K N ++V NL ++ ++ L +F + G + + +++ +S+GF + F
Sbjct: 198 RADRSTQGEAKFNNVYVKNLSENLSDEKLREKFAEHGAVTSCVIMKDEEGKSKGFGFVCF 257
Query: 83 NTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRS--KPVGPEEKQYKKDK-----VFV 135
+P A A ++G+ K ++ + K + + K E++ + +K +++
Sbjct: 258 ESPEGAASAVENLDGYTEDEKTWVVCRAQKKAEREAELKAKFEAERRERMEKMAGANLYI 317
Query: 136 KNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRM 195
KNL E D+E+L+ F +FG I +++RD +G S+G F+ F S A +A+ EMNG+M
Sbjct: 318 KNLEEGTDDEKLRELFNEFGTITSCRVMRDASGASRGSAFVAFSSPDEATRAVTEMNGKM 377
Query: 196 IQHNSTFVSLAE 207
+ +V+LA+
Sbjct: 378 VGAKPLYVALAQ 389
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 41/83 (49%), Gaps = 6/83 (7%)
Query: 229 NKIFVANLPSNINNSEFEELFARFGTITS----SSLVSDKHIGF--IEFIMPKHATHAVS 282
+ ++V +L +++ ++ E F+ G + S L++ + +G+ + F A HA+
Sbjct: 32 SSLYVGDLETSVTEAQLYEKFSSIGPVVSIRVCRDLITRRSLGYAYVNFQSSSDAAHAID 91
Query: 283 TMNGHVFKSKPLKVTLSGTKPGV 305
+N V KP++V S P V
Sbjct: 92 VLNFQVINGKPIRVLYSQRDPAV 114
>gi|407920118|gb|EKG13336.1| hypothetical protein MPH_09618 [Macrophomina phaseolina MS6]
Length = 768
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 86/267 (32%), Positives = 131/267 (49%), Gaps = 21/267 (7%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+PSV L F G + +RV R+ S G+A + +N+ + +KA E+
Sbjct: 59 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSDDGEKALEEL 118
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI KP I + + P R G VF+KNL +D + L F FG
Sbjct: 119 NYTLIKGKPCRIMWSQRDPALRKTGQG---------NVFIKNLDGAIDNKALHDTFAAFG 169
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ +DENG SKG+GF+ + + +AA AI +NG ++ FV +P K
Sbjct: 170 NILSCKVAQDENGNSKGYGFVHYETAEAANNAIKAVNGMLLNEKKVFV--GHHIPKKDRM 227
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFI 269
K + A ++V N+ + + EF ELF ++G ITS+SL D + GF+
Sbjct: 228 SKFEE---MKANFTNVYVKNIDLEVTDDEFRELFEKYGQITSASLAHDNETGKSRGFGFV 284
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKV 296
F+ + A AV +N +K + L V
Sbjct: 285 NFVKHESAAKAVDELNDKDWKGQKLYV 311
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 74/268 (27%), Positives = 135/268 (50%), Gaps = 19/268 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK W + D R + N + + NL+ ++DN+AL + F FG +
Sbjct: 124 KGKPCRIMWSQ---RDPALRKTGQGN-------VFIKNLDGAIDNKALHDTFAAFGNILS 173
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+VA+++N S+G+ + + T A A +NG L+ K V + K + SK
Sbjct: 174 CKVAQDENGNSKGYGFVHYETAEAANNAIKAVNGMLLNEKKVFVGHHIPKKDRMSK---F 230
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRD-ENGKSKGFGFIQFFSYK 182
EE + V+VKN+ V ++E + F K+G I + D E GKS+GFGF+ F ++
Sbjct: 231 EEMKANFTNVYVKNIDLEVTDDEFRELFEKYGQITSASLAHDNETGKSRGFGFVNFVKHE 290
Query: 183 AAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNK-----IFVANLP 237
+A KA+ E+N + + +V A+ ++ + + + +++K ++V NL
Sbjct: 291 SAAKAVDELNDKDWKGQKLYVGRAQKKHEREEELRKQYEAARAEKQSKYQGVNLYVKNLH 350
Query: 238 SNINNSEFEELFARFGTITSSSLVSDKH 265
++++ + ++FA FGTITS+ ++ D
Sbjct: 351 DDVDDEKLRDMFAPFGTITSAKVMRDTQ 378
Score = 38.1 bits (87), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 27/46 (58%)
Query: 74 SRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSK 119
S+GF + F+ P EA KA EMN ++ KP+ + + K ++S+
Sbjct: 442 SKGFGFVCFSNPDEATKAVTEMNQKMMNGKPLYVALAQRKDVRKSQ 487
>gi|226496737|ref|NP_001151785.1| LOC100285420 [Zea mays]
gi|195649671|gb|ACG44303.1| polyadenylate-binding protein 2 [Zea mays]
gi|414586484|tpg|DAA37055.1| TPA: polyadenylate-binding protein 2 [Zea mays]
Length = 660
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 96/317 (30%), Positives = 154/317 (48%), Gaps = 49/317 (15%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ +DN++L F FGT+ +VA ++ +S+GF + + A+ A +N
Sbjct: 130 IFIKNLDKMIDNKSLHETFSSFGTILSCKVAMDEGGQSKGFGFVQYEKEEAAQNAIKSLN 189
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGP----EEKQYKKDK-----VFVKNLVETVDEEEL 147
G LI KPV VGP +E+ + DK VFVKNL E+ +E+L
Sbjct: 190 GMLINDKPVF--------------VGPFLRKQERDHSFDKTKFNNVFVKNLSESTTKEDL 235
Query: 148 KSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
F ++GNI ++ +GKS+ FGFI F + AA +A+ E+NG+ I +V A+
Sbjct: 236 LKIFGEYGNITSAVVMIGMDGKSRCFGFINFENPDAASRAVQELNGKKINDKEWYVGRAQ 295
Query: 208 I-----VPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
+ K+ F ++ + +++ NL +I + + ELF+ FG ITS ++
Sbjct: 296 KKSEREMELKRRFEQILKDAADKYQGLNLYLKNLDDSIGDDQLRELFSNFGKITSCKVMR 355
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVT---------------LSGTK 302
D K GF+ F + A+ A++ MNG + KPL V S +
Sbjct: 356 DQNGLSKGSGFVAFSTREEASQALTEMNGKMISGKPLYVAFAQRKEDRKAMLQAQFSQMR 415
Query: 303 PGVSITNPTKAPKKPAY 319
P V +T PT AP+ P Y
Sbjct: 416 PAVPMT-PTLAPRLPMY 431
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 77/256 (30%), Positives = 125/256 (48%), Gaps = 22/256 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKKARVEM 95
L+V +LE SV + L F + G + VRV R+ + S G+A + FN P +A +A +
Sbjct: 42 LYVGDLEGSVSDSQLYELFSQAGQVVSVRVCRDVTSRRSLGYAYVNFNNPLDAARALEVL 101
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N + +KP+ + + P R + +F+KNL + +D + L F FG
Sbjct: 102 NFAPLNNKPIRVMYSNRDPSSR---------RSGSANIFIKNLDKMIDNKSLHETFSSFG 152
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
I+ K+ DE G+SKGFGF+Q+ +AA+ AI +NG +I FV G +
Sbjct: 153 TILSCKVAMDEGGQSKGFGFVQYEKEEAAQNAIKSLNGMLINDKPVFV-------GPFLR 205
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLV-----SDKHIGFIE 270
+ + + N +FV NL + + ++F +G ITS+ ++ + GFI
Sbjct: 206 KQERDHSFDKTKFNNVFVKNLSESTTKEDLLKIFGEYGNITSAVVMIGMDGKSRCFGFIN 265
Query: 271 FIMPKHATHAVSTMNG 286
F P A+ AV +NG
Sbjct: 266 FENPDAASRAVQELNG 281
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 107/230 (46%), Gaps = 26/230 (11%)
Query: 33 KENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKAR 92
K N + V NL S + L+ F ++G + V + +SR F I F P A +A
Sbjct: 217 KFNNVFVKNLSESTTKEDLLKIFGEYGNITSAVVMIGMDGKSRCFGFINFENPDAASRAV 276
Query: 93 VEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDK--------VFVKNLVETVDE 144
E+NG I K + + K +R + +Q KD +++KNL +++ +
Sbjct: 277 QELNGKKINDKEWYVGRAQ-KKSEREMELKRRFEQILKDAADKYQGLNLYLKNLDDSIGD 335
Query: 145 EELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVS 204
++L+ F FG I K++RD+NG SKG GF+ F + + A +A+ EMNG+MI +V+
Sbjct: 336 DQLRELFSNFGKITSCKVMRDQNGLSKGSGFVAFSTREEASQALTEMNGKMISGKPLYVA 395
Query: 205 LA---------------EIVPGKKVFPKVKP--PLLQPARKNKIFVANLP 237
A ++ P + P + P P+ P ++F P
Sbjct: 396 FAQRKEDRKAMLQAQFSQMRPAVPMTPTLAPRLPMYPPMAPQQLFYGQAP 445
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 46/82 (56%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L++ NL+ S+ + L F FG + +V R++N S+G + F+T EA +A
Sbjct: 319 YQGLNLYLKNLDDSIGDDQLRELFSNFGKITSCKVMRDQNGLSKGSGFVAFSTREEASQA 378
Query: 92 RVEMNGHLIGSKPVIITFVELK 113
EMNG +I KP+ + F + K
Sbjct: 379 LTEMNGKMISGKPLYVAFAQRK 400
Score = 40.8 bits (94), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
Query: 224 QPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIG--FIEFIMPKHA 277
QP ++V +L ++++S+ ELF++ G + S + D + +G ++ F P A
Sbjct: 35 QPLPTTSLYVGDLEGSVSDSQLYELFSQAGQVVSVRVCRDVTSRRSLGYAYVNFNNPLDA 94
Query: 278 THAVSTMNGHVFKSKPLKVTLSGTKP 303
A+ +N +KP++V S P
Sbjct: 95 ARALEVLNFAPLNNKPIRVMYSNRDP 120
>gi|392927774|ref|NP_510259.2| Protein PAB-2, isoform b [Caenorhabditis elegans]
gi|371570799|emb|CAA90446.2| Protein PAB-2, isoform b [Caenorhabditis elegans]
Length = 575
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 93/313 (29%), Positives = 157/313 (50%), Gaps = 31/313 (9%)
Query: 5 GKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDV 64
G+ + W + D AR N + + NL+ +DN+++ + F FG +
Sbjct: 8 GRPMRIMWSQ---RDPAARRAGNGN-------IFIKNLDRVIDNKSVYDTFSLFGNILSC 57
Query: 65 RVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPE 124
+VA + S+G+ + F T A+ A ++NG L+ K V + + + QR K +G
Sbjct: 58 KVATDDEGNSKGYGFVHFETEHSAQTAIEKVNGMLLSDKKVYVGKFQPR-AQRMKELG-- 114
Query: 125 EKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAA 184
E K VFVKN E +D+E+L + F KFG I ++ D GK KGFGF+ F AA
Sbjct: 115 ESGLKYTNVFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQGKPKGFGFVAFADQDAA 174
Query: 185 EKAIIEMNGRMIQHNSTFVSL----------AEIVPGKKVFPKVKPPLLQPARKNKIFVA 234
+A+ ++N +++ +S+ AE+ K+ + +K +Q + ++V
Sbjct: 175 GQAVEKLNDSILEGTDCKLSVCRAQKKSERSAEL---KRKYEALKQERVQRYQGVNLYVK 231
Query: 235 NLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVF 289
N+ ++N+ + F+ FGTITS+ ++ D K GF+ F P+ AT AV+ MN +
Sbjct: 232 NIEEDLNDDGLRDHFSSFGTITSAKVMVDENGRSKGFGFVCFEKPEEATAAVTDMNSKMI 291
Query: 290 KSKPLKVTLSGTK 302
+KPL V L+ K
Sbjct: 292 GAKPLYVALAQRK 304
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 101/210 (48%), Gaps = 19/210 (9%)
Query: 95 MNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKF 154
MN +I +P+ I + + P R G +F+KNL +D + + F F
Sbjct: 1 MNFEVIHGRPMRIMWSQRDPAARRAGNG---------NIFIKNLDRVIDNKSVYDTFSLF 51
Query: 155 GNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKV 214
GNI+ K+ D+ G SKG+GF+ F + +A+ AI ++NG ++ +V + P +
Sbjct: 52 GNILSCKVATDDEGNSKGYGFVHFETEHSAQTAIEKVNGMLLSDKKVYV--GKFQPRAQR 109
Query: 215 FPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFI 269
++ L + +FV N +++ + +F++FG ITS+ +++D K GF+
Sbjct: 110 MKELGESGL---KYTNVFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQGKPKGFGFV 166
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299
F A AV +N + + K+++
Sbjct: 167 AFADQDAAGQAVEKLNDSILEGTDCKLSVC 196
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 53/94 (56%)
Query: 26 KENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTP 85
+E + Y+ L+V N+E +++ L + F FGT+ +V ++N S+GF + F P
Sbjct: 217 QERVQRYQGVNLYVKNIEEDLNDDGLRDHFSSFGTITSAKVMVDENGRSKGFGFVCFEKP 276
Query: 86 AEAKKARVEMNGHLIGSKPVIITFVELKPGQRSK 119
EA A +MN +IG+KP+ + + K +R++
Sbjct: 277 EEATAAVTDMNSKMIGAKPLYVALAQRKEDRRAQ 310
>gi|194386544|dbj|BAG61082.1| unnamed protein product [Homo sapiens]
Length = 604
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 97/334 (29%), Positives = 153/334 (45%), Gaps = 65/334 (19%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPG----------------------------------- 115
A MN +I KPV I + + P
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVVCDENGSKGYGFVHFETQEAAERAIEKMN 127
Query: 116 ------------------QRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNI 157
+R +G K++ V++KN E +D+E LK F KFG
Sbjct: 128 GMLLNDRKVFVGRFKSRKEREAELGARAKEFTN--VYIKNFGEDMDDERLKDLFGKFGPA 185
Query: 158 IEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPGK 212
+ VK++ DE+GKSKGFGF+ F ++ A+KA+ EMNG+ + +V A+ K
Sbjct: 186 LSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 245
Query: 213 KVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGF 268
+ F ++K + + ++V NL I++ + F+ FGTITS+ ++ + K GF
Sbjct: 246 RKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGF 305
Query: 269 IEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
+ F P+ AT AV+ MNG + +KPL V L+ K
Sbjct: 306 VCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 339
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 75/250 (30%), Positives = 125/250 (50%), Gaps = 36/250 (14%)
Query: 21 GARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAII 80
GAR+ KE VY + N +D++ L + F KFG V+V +++ +S+GF +
Sbjct: 152 GARA-KEFTNVY------IKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFV 204
Query: 81 VFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKV------- 133
F +A+KA EMNG + K + + + K +R + + +Q K+D++
Sbjct: 205 SFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK-VERQTELKRKFEQMKQDRITRYQGVN 263
Query: 134 -FVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMN 192
+VKNL + +D+E L+ F FG I K++ E G+SKGFGF+ F S + A KA+ EMN
Sbjct: 264 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMN 322
Query: 193 GRMIQHNSTFVSLAEIVPGKKVF-----------------PKVKPPLLQPARKNKIFVAN 235
GR++ +V+LA+ ++ P + P QPA + F+A
Sbjct: 323 GRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVQAVPNPVINP--YQPAPPSGYFMAA 380
Query: 236 LPSNINNSEF 245
+P N + +
Sbjct: 381 IPQTQNRAAY 390
>gi|358394883|gb|EHK44276.1| hypothetical protein TRIATDRAFT_79372 [Trichoderma atroviride IMI
206040]
Length = 746
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 84/269 (31%), Positives = 136/269 (50%), Gaps = 26/269 (9%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+PSV L F + G + +RV R+ S G+A + +N+ + +KA E+
Sbjct: 61 LYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTPDGEKALEEL 120
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N I +P I + + P R G VF+KNL +D + L F FG
Sbjct: 121 NYTPIKGRPCRIMWSQRDPALRKTGQG---------NVFIKNLDVAIDNKALHDTFAAFG 171
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKV- 214
NI+ K+ +DE G SKG+GF+ + + +AA +AI +NG ++ +V +P K
Sbjct: 172 NILSCKVAQDETGASKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGYH--IPKKDRQ 229
Query: 215 --FPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKH-----IG 267
F ++K A ++V N+ ++ ++EF ELF ++G +TSSSL D+ G
Sbjct: 230 SKFEEMK------ANFTNVYVKNISPDVTDNEFRELFEKYGDVTSSSLARDQEGKSRGFG 283
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
F+ F + A AV +NG+ F+ + L V
Sbjct: 284 FVNFTTHEAAYKAVDELNGNDFRGQELYV 312
Score = 114 bits (284), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 89/353 (25%), Positives = 160/353 (45%), Gaps = 67/353 (18%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KG+ W + D R + N + + NL+ ++DN+AL + F FG +
Sbjct: 126 KGRPCRIMWSQ---RDPALRKTGQGN-------VFIKNLDVAIDNKALHDTFAAFGNILS 175
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+VA+++ S+G+ + + T A +A +NG L+ K V + + K ++SK
Sbjct: 176 CKVAQDETGASKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGYHIPKKDRQSKF--- 232
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
EE + V+VKN+ V + E + F K+G++ + RD+ GKS+GFGF+ F +++A
Sbjct: 233 EEMKANFTNVYVKNISPDVTDNEFRELFEKYGDVTSSSLARDQEGKSRGFGFVNFTTHEA 292
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAEIVPGK--KVFPKVKPPLLQPARKNK---IFVANLPS 238
A KA+ E+NG + +V A+ + ++ + L+ A K + +++ NL
Sbjct: 293 AYKAVDELNGNDFRGQELYVGRAQKKHEREEELRKSYEAARLEKASKYQGVNLYIKNLDD 352
Query: 239 NINNSEFEELFARFGTITSSSLVSD----------------------------------- 263
++++ + ++F+ FG ITS+ ++ D
Sbjct: 353 DVDDDKLRQMFSEFGPITSAKVMRDSLQEGEEEVKDQEKDKENQKEAENEAEAESAENAE 412
Query: 264 --------------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
K GF+ F P AT AV+ MN + +KPL V L+ K
Sbjct: 413 KKAEKKGDKKLGKSKGFGFVCFSNPDDATKAVAEMNQRMINNKPLYVALAQRK 465
Score = 38.5 bits (88), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 28/46 (60%)
Query: 74 SRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSK 119
S+GF + F+ P +A KA EMN +I +KP+ + + K ++S+
Sbjct: 426 SKGFGFVCFSNPDDATKAVAEMNQRMINNKPLYVALAQRKDVRKSQ 471
>gi|300796236|ref|NP_001179218.1| polyadenylate-binding protein 5 [Bos taurus]
gi|296471041|tpg|DAA13156.1| TPA: poly(A) binding protein, cytoplasmic 5 [Bos taurus]
gi|440903676|gb|ELR54310.1| Polyadenylate-binding protein 5 [Bos grunniens mutus]
Length = 382
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 89/285 (31%), Positives = 158/285 (55%), Gaps = 32/285 (11%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S+DN+AL F FG++ +V + N S+G+A + F++ A A +A MN
Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGSILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMN 166
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G + ++ V + + P +R+ V +K + VFVKN + +D+++LK F ++G
Sbjct: 167 GVRLNNRQVYVGRFKF-PEERAAEVRTRDKATFTN-VFVKNFGDDMDDDKLKELFSEYGP 224
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF- 215
VK++RD +GKSKGFGF+++ +++AA+KA+++++G+ I +V A+ KK+
Sbjct: 225 TESVKVIRDSSGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQ----KKIER 280
Query: 216 --------------PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLV 261
K +PP + I++ NL I++ + +E F+ FG+I+ + ++
Sbjct: 281 LAELRRRFERLRLKEKSRPPGVP------IYIKNLDETIDDEKLKEEFSSFGSISRAKVM 334
Query: 262 SD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
+ K G I F + AT AV MNG + SKPL+VTL +
Sbjct: 335 VEVGQGKGFGVICFSSFEEATKAVDEMNGRIVGSKPLQVTLGQAR 379
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 77/267 (28%), Positives = 128/267 (47%), Gaps = 26/267 (9%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDES-RGFAIIVFNTPAEAKKARVEMNG 97
V +L+P V L +F+ G LR R+ R+ S G+ + F PA+A+ A MN
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 98 HLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNI 157
LI KP + + + R +G +F+KNL +++D L F FG+I
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGIG---------NIFIKNLDKSIDNRALFYLFSAFGSI 132
Query: 158 IEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPK 217
+ K+V D+NG SKG+ ++ F S AA +AI MNG + + +V G+ FP+
Sbjct: 133 LSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYV-------GRFKFPE 184
Query: 218 VKPPLLQPARK---NKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFI 269
+ ++ K +FV N ++++ + +ELF+ +G S ++ D K GF+
Sbjct: 185 ERAAEVRTRDKATFTNVFVKNFGDDMDDDKLKELFSEYGPTESVKVIRDSSGKSKGFGFV 244
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKV 296
+ + A AV ++G K L V
Sbjct: 245 RYETHEAAQKAVLDLHGKSIDGKVLYV 271
>gi|359386152|gb|AEV43365.1| poly A-binding protein 2 [Citrus sinensis]
Length = 652
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 98/310 (31%), Positives = 156/310 (50%), Gaps = 41/310 (13%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S+DN+AL + F FG + +VA + +SRG+ + F+ AK A ++N
Sbjct: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLN 189
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGP----EEKQYKKDK-----VFVKNLVETVDEEEL 147
G L+ K V VGP +E++ DK V+VKNL ET E++L
Sbjct: 190 GMLLNDKQVF--------------VGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDL 235
Query: 148 KSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
K F +FG I ++RD +GKSK FGF+ F A +++ +NG+ +V A+
Sbjct: 236 KKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQ 295
Query: 208 IVPGKKVFPKVK--PPLLQPARKNK---IFVANLPSNINNSEFEELFARFGTITSSSLVS 262
+++ K K L + A K + ++V NL +I++ + +ELF+ FGTITS ++
Sbjct: 296 KKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMR 355
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK--------PGVSITN 309
D + GF+ F + A+ A++ MNG + SKPL V L+ K S
Sbjct: 356 DPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
Query: 310 PTKAPKKPAY 319
P P+ P Y
Sbjct: 416 PPVGPRMPMY 425
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 80/284 (28%), Positives = 139/284 (48%), Gaps = 26/284 (9%)
Query: 15 GISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDE 73
GI+++ G ++ + L+V +L+ SV++ L + F + G + VRV R+
Sbjct: 24 GIANNGGVGDARQ----FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRR 79
Query: 74 SRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKV 133
S G+ + +N EA +A E+N + KP+ I + P R G +
Sbjct: 80 SLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAG---------NI 130
Query: 134 FVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNG 193
F+KNL +++D + L F FGNI+ K+ D G+S+G+GF+QF + ++A+ AI ++NG
Sbjct: 131 FIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNG 190
Query: 194 RMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFG 253
++ FV G + + + R N ++V NL + +++F FG
Sbjct: 191 MLLNDKQVFV-------GPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFG 243
Query: 254 TITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSK 292
ITS++++ D K GF+ F P A +V +NG F K
Sbjct: 244 IITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDK 287
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 106/200 (53%), Gaps = 12/200 (6%)
Query: 35 NELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVE 94
N ++V NL + L F +FG + V R+ + +S+ F + F+ P +A ++
Sbjct: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
Query: 95 MNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKK--DK-----VFVKNLVETVDEEEL 147
+NG K + + K + + G E+ K+ DK ++VKNL +++ +++L
Sbjct: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
Query: 148 KSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
K F +FG I K++RD NG S+G GF+ F + + A KA+ EMNG+M+ +V+LA+
Sbjct: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
Query: 208 IVPGKKV-----FPKVKPPL 222
++ F +++PP+
Sbjct: 399 RKEERRARLQAQFSQMRPPV 418
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 60/116 (51%), Gaps = 10/116 (8%)
Query: 23 RSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVF 82
+S KE ++ L+V NL+ S+ + L F +FGT+ +V R+ N SRG + F
Sbjct: 310 QSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAF 369
Query: 83 NTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSK----------PVGPEEKQY 128
+T EA KA EMNG ++ SKP+ + + K +R++ PVGP Y
Sbjct: 370 STAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPPVGPRMPMY 425
>gi|17567133|ref|NP_510260.1| Protein PAB-2, isoform a [Caenorhabditis elegans]
gi|3876085|emb|CAA90444.1| Protein PAB-2, isoform a [Caenorhabditis elegans]
Length = 692
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 93/313 (29%), Positives = 157/313 (50%), Gaps = 31/313 (9%)
Query: 5 GKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDV 64
G+ + W + D AR N + + NL+ +DN+++ + F FG +
Sbjct: 125 GRPMRIMWSQ---RDPAARRAGNGN-------IFIKNLDRVIDNKSVYDTFSLFGNILSC 174
Query: 65 RVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPE 124
+VA + S+G+ + F T A+ A ++NG L+ K V + + + QR K +G
Sbjct: 175 KVATDDEGNSKGYGFVHFETEHSAQTAIEKVNGMLLSDKKVYVGKFQPR-AQRMKELG-- 231
Query: 125 EKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAA 184
E K VFVKN E +D+E+L + F KFG I ++ D GK KGFGF+ F AA
Sbjct: 232 ESGLKYTNVFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQGKPKGFGFVAFADQDAA 291
Query: 185 EKAIIEMNGRMIQHNSTFVSL----------AEIVPGKKVFPKVKPPLLQPARKNKIFVA 234
+A+ ++N +++ +S+ AE+ K+ + +K +Q + ++V
Sbjct: 292 GQAVEKLNDSILEGTDCKLSVCRAQKKSERSAEL---KRKYEALKQERVQRYQGVNLYVK 348
Query: 235 NLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVF 289
N+ ++N+ + F+ FGTITS+ ++ D K GF+ F P+ AT AV+ MN +
Sbjct: 349 NIEEDLNDDGLRDHFSSFGTITSAKVMVDENGRSKGFGFVCFEKPEEATAAVTDMNSKMI 408
Query: 290 KSKPLKVTLSGTK 302
+KPL V L+ K
Sbjct: 409 GAKPLYVALAQRK 421
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 75/277 (27%), Positives = 134/277 (48%), Gaps = 20/277 (7%)
Query: 29 NKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVAR-NKNDESRGFAIIVFNTPAE 87
N Y L++ +L P V L +F G + +RV R N + S G+A + F PA+
Sbjct: 51 NATYSMASLYIGDLHPDVSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPAD 110
Query: 88 AKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEEL 147
A++A MN +I +P+ I + + P R G +F+KNL +D + +
Sbjct: 111 AERALDTMNFEVIHGRPMRIMWSQRDPAARRAGNG---------NIFIKNLDRVIDNKSV 161
Query: 148 KSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
F FGNI+ K+ D+ G SKG+GF+ F + +A+ AI ++NG ++ +V +
Sbjct: 162 YDTFSLFGNILSCKVATDDEGNSKGYGFVHFETEHSAQTAIEKVNGMLLSDKKVYV--GK 219
Query: 208 IVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD---- 263
P + ++ L + +FV N +++ + +F++FG ITS+ +++D
Sbjct: 220 FQPRAQRMKELGESGL---KYTNVFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQGK 276
Query: 264 -KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299
K GF+ F A AV +N + + K+++
Sbjct: 277 PKGFGFVAFADQDAAGQAVEKLNDSILEGTDCKLSVC 313
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 53/94 (56%)
Query: 26 KENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTP 85
+E + Y+ L+V N+E +++ L + F FGT+ +V ++N S+GF + F P
Sbjct: 334 QERVQRYQGVNLYVKNIEEDLNDDGLRDHFSSFGTITSAKVMVDENGRSKGFGFVCFEKP 393
Query: 86 AEAKKARVEMNGHLIGSKPVIITFVELKPGQRSK 119
EA A +MN +IG+KP+ + + K +R++
Sbjct: 394 EEATAAVTDMNSKMIGAKPLYVALAQRKEDRRAQ 427
>gi|395548760|ref|XP_003775245.1| PREDICTED: polyadenylate-binding protein 1-like [Sarcophilus
harrisii]
Length = 730
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 84/273 (30%), Positives = 150/273 (54%), Gaps = 13/273 (4%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
V NLE S++N++L + F FG + +V + N S+G+ + F A++A +MNG
Sbjct: 202 VKNLEKSINNKSLYDAFSSFGNILSCKVITDDNG-SKGYGFVHFEHRESAERAIQKMNGI 260
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ + + + + + S+ +G + +++ V++KN E +DE+ L F KFG +
Sbjct: 261 LLNDLKIFVGHFKSRKDRESE-LGAQTREF--TNVYIKNFGEDMDEDRLSKIFEKFGPTL 317
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKK 213
VK++RD+ G+SKGFGF+ F ++ A+ AI MNG+ + + A+ ++
Sbjct: 318 SVKVMRDDCGRSKGFGFVNFQKHEDAQNAIDNMNGKELNGRQIYAGRAQKKLERQTQLQR 377
Query: 214 VFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGFI 269
F ++K + + +++ NL +I++ + F+ FGTITS+ ++ + K GF+
Sbjct: 378 HFEQLKQNRIVRYQGVNLYIKNLDDDIDDENLRKEFSSFGTITSAKVMMNNGRSKGFGFV 437
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F P+ AT AV+ MNG + SKPL V L+ K
Sbjct: 438 CFSAPEEATTAVTEMNGRLVASKPLYVALAQRK 470
Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 73/264 (27%), Positives = 126/264 (47%), Gaps = 37/264 (14%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L V L +F G + +RV R+ S G+A + F A+A++ +M
Sbjct: 112 LYVGDLHHEVTEAMLYEKFSPAGPILSIRVCRDAVTHRSLGYAYVNFQHLADAERVMTDM 171
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N ++I KPV + + + P R +G VFVKNL ++++ + L F FG
Sbjct: 172 NLYIIKGKPVRLMWSQRDPSLRKSGIG---------NVFVKNLEKSINNKSLYDAFSSFG 222
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL--------AE 207
NI+ K++ D+NG SKG+GF+ F ++AE+AI +MNG ++ FV +E
Sbjct: 223 NILSCKVITDDNG-SKGYGFVHFEHRESAERAIQKMNGILLNDLKIFVGHFKSRKDRESE 281
Query: 208 IVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD---- 263
+ + F +++ N +++ ++F +FG S ++ D
Sbjct: 282 LGAQTREF-------------TNVYIKNFGEDMDEDRLSKIFEKFGPTLSVKVMRDDCGR 328
Query: 264 -KHIGFIEFIMPKHATHAVSTMNG 286
K GF+ F + A +A+ MNG
Sbjct: 329 SKGFGFVNFQKHEDAQNAIDNMNG 352
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 26 KENNKV-YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNT 84
K+N V Y+ L++ NL+ +D++ L EF FGT+ +V N N S+GF + F+
Sbjct: 383 KQNRIVRYQGVNLYIKNLDDDIDDENLRKEFSSFGTITSAKVMMN-NGRSKGFGFVCFSA 441
Query: 85 PAEAKKARVEMNGHLIGSKPVIITFVELK 113
P EA A EMNG L+ SKP+ + + K
Sbjct: 442 PEEATTAVTEMNGRLVASKPLYVALAQRK 470
>gi|303272375|ref|XP_003055549.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226463523|gb|EEH60801.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 606
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 90/284 (31%), Positives = 150/284 (52%), Gaps = 32/284 (11%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ +DN+AL + F +FG + +VA + +S+G+ + F+T A+ A ++N
Sbjct: 122 IFIKNLDKEIDNKALYDTFAQFGNIVSAKVATDLQGQSKGYGFVQFDTEEGAQSAIEKVN 181
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKK-------DKVFVKNLVETVDEEELKS 149
G L+ K V VGP +K+ ++ + V+VKNL E+V EE+L+
Sbjct: 182 GMLLNDKQVY--------------VGPFQKRNERGGGPTTFNNVYVKNLHESVTEEKLRE 227
Query: 150 HFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGR-MIQHNSTFVSLAEI 208
F KFG + V +++D GKSKGFGF+ + +AA K++ E++G I+ + V A+
Sbjct: 228 VFEKFGALTSVVVMKDAEGKSKGFGFVCYEDAEAAGKSVEELDGYDKIEDKAWVVCRAQK 287
Query: 209 VPGKKVFPKVKPPLLQPARKNK-----IFVANLPSNINNSEFEELFARFGTITSSSLVSD 263
++ K K + R K +++ NL +++++ ELFA FGTITS ++ D
Sbjct: 288 KSEREAELKAKFDAERRERMEKMAGANLYIKNLEDTVDDAKLRELFAEFGTITSCRVMRD 347
Query: 264 -----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
+ F+ F AT AV+ MNG + KPL V L+ K
Sbjct: 348 TAGASRGSAFVAFSSADEATRAVTEMNGKMAGQKPLYVALAQRK 391
Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 71/257 (27%), Positives = 123/257 (47%), Gaps = 24/257 (9%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+ +L+PS L F G + +RV R+ S G+A + F +A +A +
Sbjct: 34 LYCGDLDPSCTEAQLYELFSTIGPVVSIRVCRDLITRRSLGYAYVNFQQGNDAARAIDAL 93
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N ++ KP+ I + + P R VG +F+KNL + +D + L F +FG
Sbjct: 94 NFQVVNGKPIRIMYSQRDPALRKSGVG---------NIFIKNLDKEIDNKALYDTFAQFG 144
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ D G+SKG+GF+QF + + A+ AI ++NG ++ +V F
Sbjct: 145 NIVSAKVATDLQGQSKGYGFVQFDTEEGAQSAIEKVNGMLLNDKQVYVG---------PF 195
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIE 270
K P N ++V NL ++ + E+F +FG +TS ++ D K GF+
Sbjct: 196 QKRNERGGGPTTFNNVYVKNLHESVTEEKLREVFEKFGALTSVVVMKDAEGKSKGFGFVC 255
Query: 271 FIMPKHATHAVSTMNGH 287
+ + A +V ++G+
Sbjct: 256 YEDAEAAGKSVEELDGY 272
Score = 94.0 bits (232), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 98/181 (54%), Gaps = 8/181 (4%)
Query: 35 NELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVE 94
N ++V NL SV + L F+KFG L V V ++ +S+GF + + A K+ E
Sbjct: 209 NNVYVKNLHESVTEEKLREVFEKFGALTSVVVMKDAEGKSKGFGFVCYEDAEAAGKSVEE 268
Query: 95 MNGH-LIGSKPVIITFVELKPGQRS--KPVGPEEKQYKKDK-----VFVKNLVETVDEEE 146
++G+ I K ++ + K + + K E++ + +K +++KNL +TVD+ +
Sbjct: 269 LDGYDKIEDKAWVVCRAQKKSEREAELKAKFDAERRERMEKMAGANLYIKNLEDTVDDAK 328
Query: 147 LKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLA 206
L+ F +FG I +++RD G S+G F+ F S A +A+ EMNG+M +V+LA
Sbjct: 329 LRELFAEFGTITSCRVMRDTAGASRGSAFVAFSSADEATRAVTEMNGKMAGQKPLYVALA 388
Query: 207 E 207
+
Sbjct: 389 Q 389
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 47/81 (58%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L++ NLE +VD+ L F +FGT+ RV R+ SRG A + F++ EA +A EMN
Sbjct: 315 LYIKNLEDTVDDAKLRELFAEFGTITSCRVMRDTAGASRGSAFVAFSSADEATRAVTEMN 374
Query: 97 GHLIGSKPVIITFVELKPGQR 117
G + G KP+ + + K +R
Sbjct: 375 GKMAGQKPLYVALAQRKEDRR 395
>gi|380503877|ref|NP_001244114.1| polyadenylate-binding protein 5 [Equus caballus]
Length = 382
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 85/275 (30%), Positives = 157/275 (57%), Gaps = 12/275 (4%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S+DN+AL F FG + +V + N S+G+A + F++ A A +A MN
Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMN 166
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G + ++ V + + P +R+ V ++ + VFVKN + +D+E+LK F ++G+
Sbjct: 167 GVRLNNRQVYVGRFKF-PEERAAEVRTRDRATFTN-VFVKNFGDDMDDEKLKEIFSEYGS 224
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFP 216
VK++RD +GKSKGFGF+++ +++AA+KA+++++G+ I +V A+ +
Sbjct: 225 TESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAEL 284
Query: 217 KVKPPLLQPARKNK-----IFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIG 267
+ + L+ K++ I++ NL I++ + +E F+ FG+I+ + ++ + K G
Sbjct: 285 RRRFERLRLKEKSRAPGVPIYIKNLDETIDDEKLKEEFSSFGSISRAKVMVEVGQGKGFG 344
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
+ F + AT AV MNG + SKPL VTL +
Sbjct: 345 VVCFSSFEEATKAVDEMNGRIMGSKPLHVTLGQAR 379
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 78/267 (29%), Positives = 129/267 (48%), Gaps = 26/267 (9%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDES-RGFAIIVFNTPAEAKKARVEMNG 97
V +L+P V L +F+ G LR R+ R+ S G+ + F PA+A+ A MN
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 98 HLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNI 157
LI KP + + + R VG +F+KNL +++D L F FGNI
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVG---------NIFIKNLDKSIDNRALFYLFSAFGNI 132
Query: 158 IEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPK 217
+ K+V D+NG SKG+ ++ F S AA +AI MNG + + +V G+ FP+
Sbjct: 133 LSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYV-------GRFKFPE 184
Query: 218 VKPPLLQP---ARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFI 269
+ ++ A +FV N ++++ + +E+F+ +G+ S ++ D K GF+
Sbjct: 185 ERAAEVRTRDRATFTNVFVKNFGDDMDDEKLKEIFSEYGSTESVKVIRDASGKSKGFGFV 244
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKV 296
+ + A AV ++G K L V
Sbjct: 245 RYETHEAAQKAVLDLHGKSIDGKVLYV 271
>gi|312378306|gb|EFR24923.1| hypothetical protein AND_10202 [Anopheles darlingi]
Length = 645
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 89/275 (32%), Positives = 150/275 (54%), Gaps = 16/275 (5%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ +DN+A+ + F FG + +VA+++ +S+G+ + F T A + ++NG
Sbjct: 103 IKNLDKKIDNKAMYDTFSAFGNILSCKVAQDEKGQSKGYGFVHFETEESANTSIEKVNGM 162
Query: 99 LIGSKPVII-TFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNI 157
L+ K V + F+ K +R K +G + K + V+VKN E + EE L F K+G+I
Sbjct: 163 LLNEKKVFVGRFISRK--EREKELGEKAKLF--TNVYVKNFGEDLTEEALHEMFEKYGSI 218
Query: 158 IEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNST-FVSLAE-----IVPG 211
+++ ++GKS+GFGF+ F + AAE+A+ E+N + + +V A+ +
Sbjct: 219 TSHRVMM-KDGKSRGFGFVAFENPDAAERAVQELNAKELSDGKVLYVGRAQKKNERQMEL 277
Query: 212 KKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIG 267
K+ F ++K L ++V NL I++ + FA +GTITS+ ++ D K G
Sbjct: 278 KRRFEQLKMERLTRYHGVNLYVKNLDDTIDDERLRKEFAPYGTITSAKVMLDEGRSKGFG 337
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F+ F P AT AV+ MNG + SKPL V L+ K
Sbjct: 338 FVCFSAPDEATKAVTEMNGRIVGSKPLYVALAQRK 372
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 74/262 (28%), Positives = 126/262 (48%), Gaps = 23/262 (8%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y+ L+V +L + L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YQMASLYVGDLHADITEATLFEKFSSAGPVLSIRVCRDLITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN I +P+ I + + P R VG VF+KNL + +D + +
Sbjct: 68 ALDTMNFDTIKGRPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKKIDNKAMYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVP 210
F FGNI+ K+ +DE G+SKG+GF+ F + ++A +I ++NG ++ FV
Sbjct: 119 FSAFGNILSCKVAQDEKGQSKGYGFVHFETEESANTSIEKVNGMLLNEKKVFV------- 171
Query: 211 GKKVFPKVKPPLLQPARK--NKIFVANLPSNINNSEFEELFARFGTITSSSLV----SDK 264
G+ + K + L K ++V N ++ E+F ++G+ITS ++ +
Sbjct: 172 GRFISRKEREKELGEKAKLFTNVYVKNFGEDLTEEALHEMFEKYGSITSHRVMMKDGKSR 231
Query: 265 HIGFIEFIMPKHATHAVSTMNG 286
GF+ F P A AV +N
Sbjct: 232 GFGFVAFENPDAAERAVQELNA 253
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 97/179 (54%), Gaps = 10/179 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
++V N + +AL F+K+G++ RV K+ +SRGF + F P A++A E+N
Sbjct: 194 VYVKNFGEDLTEEALHEMFEKYGSITSHRVMM-KDGKSRGFGFVAFENPDAAERAVQELN 252
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKV--------FVKNLVETVDEEELK 148
+ V+ K +R + +Q K +++ +VKNL +T+D+E L+
Sbjct: 253 AKELSDGKVLYVGRAQKKNERQMELKRRFEQLKMERLTRYHGVNLYVKNLDDTIDDERLR 312
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
F +G I K++ DE G+SKGFGF+ F + A KA+ EMNGR++ +V+LA+
Sbjct: 313 KEFAPYGTITSAKVMLDE-GRSKGFGFVCFSAPDEATKAVTEMNGRIVGSKPLYVALAQ 370
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L+V NL+ ++D++ L EF +GT+ +V ++ S+GF + F+ P EA KA EMN
Sbjct: 297 LYVKNLDDTIDDERLRKEFAPYGTITSAKVMLDEG-RSKGFGFVCFSAPDEATKAVTEMN 355
Query: 97 GHLIGSKPVIITFVELKPGQRS 118
G ++GSKP+ + + K ++S
Sbjct: 356 GRIVGSKPLYVALAQRKEERKS 377
>gi|258565691|ref|XP_002583590.1| polyadenylate-binding protein [Uncinocarpus reesii 1704]
gi|237907291|gb|EEP81692.1| polyadenylate-binding protein [Uncinocarpus reesii 1704]
Length = 765
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 84/269 (31%), Positives = 132/269 (49%), Gaps = 25/269 (9%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+PSV L F G + +RV R+ S G+A + +N A+ ++A ++
Sbjct: 56 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 115
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI +P I + + P R G VF+KNL +D + L F FG
Sbjct: 116 NYTLIKGRPCRIMWSQRDPALRKTGQG---------NVFIKNLDTAIDNKALHDTFAAFG 166
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ +DE G SKG+GF+ + + +AA+ AI +NG ++ FV G +
Sbjct: 167 NILSCKVAQDEFGNSKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFV-------GHHIA 219
Query: 216 PKVKPPLLQPARKN--KIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIG 267
K + + + N ++V N+ + + EF ELF +FG ITS++L D + G
Sbjct: 220 KKDRQSKFEEMKANFTNVYVKNIDQDTTDEEFRELFEKFGEITSATLARDSESGKSRGFG 279
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
F+ F + A AV +N FKS+ L V
Sbjct: 280 FVNFTSHESAAAAVDNLNEKDFKSQKLYV 308
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/231 (29%), Positives = 128/231 (55%), Gaps = 9/231 (3%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ ++DN+AL + F FG + +VA+++ S+G+ + + T A+ A +NG
Sbjct: 146 IKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAAQNAIKHVNGM 205
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ K V + K ++SK EE + V+VKN+ + +EE + F KFG I
Sbjct: 206 LLNDKKVFVGHHIAKKDRQSK---FEEMKANFTNVYVKNIDQDTTDEEFRELFEKFGEIT 262
Query: 159 EVKIVRD-ENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGK--KVF 215
+ RD E+GKS+GFGF+ F S+++A A+ +N + + +V A+ + ++
Sbjct: 263 SATLARDSESGKSRGFGFVNFTSHESAAAAVDNLNEKDFKSQKLYVGRAQKKHEREEELR 322
Query: 216 PKVKPPLLQPARKNK---IFVANLPSNINNSEFEELFARFGTITSSSLVSD 263
+ + ++ A K + +++ NL +I++ + +LF+ +GTITS+ ++ D
Sbjct: 323 KQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLRDLFSGYGTITSAKVMRD 373
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/236 (24%), Positives = 99/236 (41%), Gaps = 69/236 (29%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKKARVEM 95
++V N++ ++ F+KFG + +AR+ ++ +SRGF + F + A A +
Sbjct: 237 VYVKNIDQDTTDEEFRELFEKFGEITSATLARDSESGKSRGFGFVNFTSHESAAAAVDNL 296
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKV-----------FVKNLVETVDE 144
N S+ + + + K +R + + KQY+ ++ ++KNL + +D+
Sbjct: 297 NEKDFKSQKLYVGRAQ-KKHEREEEL---RKQYEAARIEKASKYQGVNLYIKNLSDDIDD 352
Query: 145 EELKSHFIKFGNIIEVKIVRD-------------------EN------------------ 167
E+L+ F +G I K++RD EN
Sbjct: 353 EKLRDLFSGYGTITSAKVMRDNLAAESSSDSEKEAKSEGKENEPPEESKDEAAEKAETKD 412
Query: 168 ----------------GKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
GKSKGFGF+ F S A KA+ EMN RM+ +V+LA+
Sbjct: 413 TKEAKTESKKADKKLLGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQ 468
Score = 42.0 bits (97), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 28/46 (60%)
Query: 74 SRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSK 119
S+GF + F++P EA KA EMN ++ KP+ + + K +RS+
Sbjct: 431 SKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQ 476
>gi|226287551|gb|EEH43064.1| polyadenylate-binding protein [Paracoccidioides brasiliensis Pb18]
Length = 761
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 91/293 (31%), Positives = 138/293 (47%), Gaps = 26/293 (8%)
Query: 14 EGISD-DEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-N 71
EG +D +E S N L+V L+PSV L F G + +RV R+
Sbjct: 32 EGAADGNETPNSAAPTNAQPHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVT 91
Query: 72 DESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKD 131
S G+A + +N A+ ++A ++N LI KP I + + P R G
Sbjct: 92 RRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQG--------- 142
Query: 132 KVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEM 191
VF+KNL +D + L F FGNI+ K+ +DE G SKG+GF+ + + +AA AI +
Sbjct: 143 NVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAATNAIKHV 202
Query: 192 NGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKN--KIFVANLPSNINNSEFEELF 249
NG ++ FV G + K + + + N ++V NL + N EF ELF
Sbjct: 203 NGMLLNEKKVFV-------GHHIAKKDRQSKFEEMKANFTNVYVKNLEPEVTNEEFRELF 255
Query: 250 ARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
++G ITS+SL D + GF+ F+ A AV +N +K + L V
Sbjct: 256 EKYGEITSASLSRDNETGKSRGFGFVNFVNHDSAAAAVEDLNDKEYKGQKLYV 308
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 75/266 (28%), Positives = 133/266 (50%), Gaps = 19/266 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK W + D R + N + + NL+ ++DN+AL + F FG +
Sbjct: 121 KGKPCRIMWSQ---RDPALRKTGQGN-------VFIKNLDTAIDNKALHDTFAAFGNILS 170
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+VA+++ S+G+ + + T A A +NG L+ K V + K ++SK
Sbjct: 171 CKVAQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKF--- 227
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRD-ENGKSKGFGFIQFFSYK 182
EE + V+VKNL V EE + F K+G I + RD E GKS+GFGF+ F ++
Sbjct: 228 EEMKANFTNVYVKNLEPEVTNEEFRELFEKYGEITSASLSRDNETGKSRGFGFVNFVNHD 287
Query: 183 AAEKAIIEMNGRMIQHNSTFVSLAEIVPGK--KVFPKVKPPLLQPARKNK---IFVANLP 237
+A A+ ++N + + +V A+ + ++ + + ++ A K + ++V NL
Sbjct: 288 SAAAAVEDLNDKEYKGQKLYVGRAQKKHEREEELRKQHEAARVEKASKYQGVNLYVKNLT 347
Query: 238 SNINNSEFEELFARFGTITSSSLVSD 263
+I++ + +LF FG ITS+ ++ D
Sbjct: 348 DDIDDEKLRDLFIGFGNITSARVMRD 373
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/234 (25%), Positives = 97/234 (41%), Gaps = 64/234 (27%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVAR-NKNDESRGFAIIVFNTPAEAKKARVEM 95
++V NLEP V N+ F+K+G + ++R N+ +SRGF + F A A ++
Sbjct: 237 VYVKNLEPEVTNEEFRELFEKYGEITSASLSRDNETGKSRGFGFVNFVNHDSAAAAVEDL 296
Query: 96 NGHLIGSKPVIITFV--------ELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEEL 147
N + + + EL+ + V K Y+ ++VKNL + +D+E+L
Sbjct: 297 NDKEYKGQKLYVGRAQKKHEREEELRKQHEAARVEKASK-YQGVNLYVKNLTDDIDDEKL 355
Query: 148 KSHFIKFGNIIEVKI-------------------------VRDEN--------------- 167
+ FI FGNI ++ V++E
Sbjct: 356 RDLFIGFGNITSARVMRDTISDAGSESEKEKEASKDNKENVKEETKKEAGGEDSAEKTDK 415
Query: 168 --------------GKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
GKSKGFGF+ F + A KA+ EMN RM+ +V+LA+
Sbjct: 416 AEKPDTKKPTDKKLGKSKGFGFVCFSNPDEASKAVTEMNQRMVNGKPLYVALAQ 469
Score = 39.7 bits (91), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 27/46 (58%)
Query: 74 SRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSK 119
S+GF + F+ P EA KA EMN ++ KP+ + + K ++S+
Sbjct: 432 SKGFGFVCFSNPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRKSQ 477
>gi|91094515|ref|XP_971941.1| PREDICTED: similar to poly A binding protein [Tribolium castaneum]
gi|270000753|gb|EEZ97200.1| hypothetical protein TcasGA2_TC004389 [Tribolium castaneum]
Length = 565
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 82/271 (30%), Positives = 146/271 (53%), Gaps = 14/271 (5%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+DN+A+ + F FG + +VA + + S+G+ + F + A KA ++NG
Sbjct: 104 IKNLDKSIDNKAMYDTFSAFGNILSCKVAIDDDGVSKGYGFVHFESIEAANKAIEKVNGM 163
Query: 99 LIGSKPVII-TFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNI 157
L+ K V + F+ +R K +G + K+Y V+VKN + +E+L F +G I
Sbjct: 164 LLNGKKVYVGKFIPR--AEREKEIGEKSKKYTN--VYVKNFGRNLTQEQLYDLFKNYGTI 219
Query: 158 IEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPGK 212
++ + +G SKGFGFI F ++AEKA+ EMN + + +V A+ I K
Sbjct: 220 TSCVVMANPDGTSKGFGFIAFEEPESAEKAVTEMNNYELNGTNLYVGRAQKKSERIKELK 279
Query: 213 KVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGF 268
K + ++K + +++ NL +N + F++FG ITS+ ++++ K GF
Sbjct: 280 KCYEQMKLERYNRIQGANVYIKNLDDTFDNDRLRKEFSQFGAITSAKVMTEGGRSKGFGF 339
Query: 269 IEFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299
+ F P+ A+ A++ M+G + SKP+ V L+
Sbjct: 340 VCFSTPEEASKAITEMDGRMIGSKPIYVALA 370
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 83/270 (30%), Positives = 137/270 (50%), Gaps = 28/270 (10%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L P V L +F G + +RV R+ + +S G+A + F+ EA++ M
Sbjct: 14 LYVGDLHPDVTEALLYEKFSPAGQILSLRVCRDSRTKQSLGYAYVNFSQTIEAERVLDTM 73
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N L+ KP+ I + + P R +G VF+KNL +++D + + F FG
Sbjct: 74 NFDLLKGKPIRIMWSQRDPSLRKSGIG---------NVFIKNLDKSIDNKAMYDTFSAFG 124
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPG---- 211
NI+ K+ D++G SKG+GF+ F S +AA KAI ++NG ++ N V + + +P
Sbjct: 125 NILSCKVAIDDDGVSKGYGFVHFESIEAANKAIEKVNGMLL--NGKKVYVGKFIPRAERE 182
Query: 212 KKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHI 266
K++ K K + ++V N N+ + +LF +GTITS ++++ K
Sbjct: 183 KEIGEKSK-------KYTNVYVKNFGRNLTQEQLYDLFKNYGTITSCVVMANPDGTSKGF 235
Query: 267 GFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
GFI F P+ A AV+ MN + L V
Sbjct: 236 GFIAFEEPESAEKAVTEMNNYELNGTNLYV 265
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 112/229 (48%), Gaps = 25/229 (10%)
Query: 33 KENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKAR 92
K ++V N ++ + L + FK +GT+ V N + S+GF I F P A+KA
Sbjct: 191 KYTNVYVKNFGRNLTQEQLYDLFKNYGTITSCVVMANPDGTSKGFGFIAFEEPESAEKAV 250
Query: 93 VEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDK--------VFVKNLVETVDE 144
EMN + + + + + K +R K + +Q K ++ V++KNL +T D
Sbjct: 251 TEMNNYELNGTNLYVGRAQ-KKSERIKELKKCYEQMKLERYNRIQGANVYIKNLDDTFDN 309
Query: 145 EELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVS 204
+ L+ F +FG I K++ E G+SKGFGF+ F + + A KAI EM+GRMI +V+
Sbjct: 310 DRLRKEFSQFGAITSAKVM-TEGGRSKGFGFVCFSTPEEASKAITEMDGRMIGSKPIYVA 368
Query: 205 LAEIVPGKKVF-----------PKVKPPLLQPARKNKIFVANLPSNINN 242
LA+ ++ + + PPL P + + LP N+
Sbjct: 369 LAQRYEDRRAYLSAQCMQRIRHQTMSPPLTTP----QFLIPTLPRFYNH 413
>gi|295674319|ref|XP_002797705.1| polyadenylate-binding protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226280355|gb|EEH35921.1| polyadenylate-binding protein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 822
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 85/269 (31%), Positives = 130/269 (48%), Gaps = 25/269 (9%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+PSV L F G + +RV R+ S G+A + +N A+ ++A ++
Sbjct: 56 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 115
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI KP I + + P R G VF+KNL +D + L F FG
Sbjct: 116 NYTLIKGKPCRIMWSQRDPALRKTGQG---------NVFIKNLDTAIDNKALHDTFAAFG 166
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ +DE G SKG+GF+ + + +AA AI +NG ++ FV G +
Sbjct: 167 NILSCKVAQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFV-------GHHIA 219
Query: 216 PKVKPPLLQPARKN--KIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIG 267
K + + + N ++V NL + N EF ELF ++G ITS+SL D + G
Sbjct: 220 KKDRQSKFEEMKANFTNVYVKNLEPEVTNEEFRELFEKYGEITSASLSRDNETGKSRGFG 279
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
F+ F+ A AV +N +K + L V
Sbjct: 280 FVNFVNHDSAAAAVEDLNDKEYKGQKLYV 308
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 75/266 (28%), Positives = 133/266 (50%), Gaps = 19/266 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK W + D R + N + + NL+ ++DN+AL + F FG +
Sbjct: 121 KGKPCRIMWSQ---RDPALRKTGQGN-------VFIKNLDTAIDNKALHDTFAAFGNILS 170
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+VA+++ S+G+ + + T A A +NG L+ K V + K ++SK
Sbjct: 171 CKVAQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKF--- 227
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRD-ENGKSKGFGFIQFFSYK 182
EE + V+VKNL V EE + F K+G I + RD E GKS+GFGF+ F ++
Sbjct: 228 EEMKANFTNVYVKNLEPEVTNEEFRELFEKYGEITSASLSRDNETGKSRGFGFVNFVNHD 287
Query: 183 AAEKAIIEMNGRMIQHNSTFVSLAEIVPGK--KVFPKVKPPLLQPARKNK---IFVANLP 237
+A A+ ++N + + +V A+ + ++ + + ++ A K + ++V NL
Sbjct: 288 SAAAAVEDLNDKEYKGQKLYVGRAQKKHEREEELRKQHEAARVEKASKYQGVNLYVKNLT 347
Query: 238 SNINNSEFEELFARFGTITSSSLVSD 263
+I++ + +LF FG ITS+ ++ D
Sbjct: 348 DDIDDEKLRDLFIGFGNITSARVMRD 373
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/234 (25%), Positives = 97/234 (41%), Gaps = 64/234 (27%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVAR-NKNDESRGFAIIVFNTPAEAKKARVEM 95
++V NLEP V N+ F+K+G + ++R N+ +SRGF + F A A ++
Sbjct: 237 VYVKNLEPEVTNEEFRELFEKYGEITSASLSRDNETGKSRGFGFVNFVNHDSAAAAVEDL 296
Query: 96 NGHLIGSKPVIITFV--------ELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEEL 147
N + + + EL+ + V K Y+ ++VKNL + +D+E+L
Sbjct: 297 NDKEYKGQKLYVGRAQKKHEREEELRKQHEAARVEKASK-YQGVNLYVKNLTDDIDDEKL 355
Query: 148 KSHFIKFGNIIEVKI-------------------------VRDEN--------------- 167
+ FI FGNI ++ V++E
Sbjct: 356 RDLFIGFGNITSARVMRDTIGDAGSESEKEKEASKDNKENVKEETKKEAGGEDSAEKTDK 415
Query: 168 --------------GKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
GKSKGFGF+ F + A KA+ EMN RM+ +V+LA+
Sbjct: 416 AEKPDTKKPTDKKLGKSKGFGFVCFSNPDEASKAVTEMNQRMVNGKPLYVALAQ 469
Score = 39.3 bits (90), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 27/46 (58%)
Query: 74 SRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSK 119
S+GF + F+ P EA KA EMN ++ KP+ + + K ++S+
Sbjct: 432 SKGFGFVCFSNPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRKSQ 477
>gi|426257905|ref|XP_004022562.1| PREDICTED: polyadenylate-binding protein 5-like [Ovis aries]
Length = 382
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 87/285 (30%), Positives = 158/285 (55%), Gaps = 32/285 (11%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S+DN+AL F FG++ +V + N S+G+A + F++ A A +A MN
Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGSILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMN 166
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G + ++ V + + P +R+ V ++ + VFVKN + +D+++LK F ++G
Sbjct: 167 GVRLNNRQVYVGRFKF-PEERAAEVRTRDRATFTN-VFVKNFGDDMDDDKLKELFSEYGP 224
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF- 215
VK++RD +GKSKGFGF+++ +++AA+KA+++++G+ I +V A+ KK+
Sbjct: 225 TESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQ----KKIER 280
Query: 216 --------------PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLV 261
K +PP + I++ NL I++ + +E F+ FG+I+ + ++
Sbjct: 281 LAELRRRFERLRLKEKTRPPGVP------IYIKNLDETIDDEKLKEEFSSFGSISRAKVM 334
Query: 262 SD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
+ K G + F + AT AV MNG + SKPL+VTL +
Sbjct: 335 VEVEQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLQVTLGQAR 379
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 77/267 (28%), Positives = 128/267 (47%), Gaps = 26/267 (9%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDES-RGFAIIVFNTPAEAKKARVEMNG 97
V +L+P V L +F+ G LR R+ R+ S G+ + F PA+A+ A MN
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 98 HLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNI 157
LI KP + + + R +G +F+KNL +++D L F FG+I
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGIG---------NIFIKNLDKSIDNRALFYLFSAFGSI 132
Query: 158 IEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPK 217
+ K+V D+NG SKG+ ++ F S AA +AI MNG + + +V G+ FP+
Sbjct: 133 LSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYV-------GRFKFPE 184
Query: 218 VKPPLLQP---ARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFI 269
+ ++ A +FV N ++++ + +ELF+ +G S ++ D K GF+
Sbjct: 185 ERAAEVRTRDRATFTNVFVKNFGDDMDDDKLKELFSEYGPTESVKVIRDASGKSKGFGFV 244
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKV 296
+ + A AV ++G K L V
Sbjct: 245 RYETHEAAQKAVLDLHGKSIDGKVLYV 271
>gi|19347816|gb|AAL86321.1| putative poly(A)-binding protein [Arabidopsis thaliana]
Length = 613
Score = 134 bits (337), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 84/276 (30%), Positives = 152/276 (55%), Gaps = 15/276 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S+D++AL + F FG + +VA + + +S+G+ + + A+KA ++N
Sbjct: 110 IFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLN 169
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G L+ K V + P R + + K V+VKNL E+ +++LK+ F ++G
Sbjct: 170 GMLLNDKQVYV-----GPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGK 224
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFP 216
I +++D GKSKGFGF+ F + A +A+ +NG +V A+ ++
Sbjct: 225 ITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETEL 284
Query: 217 KVK--PPLLQPARK---NKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHI 266
+V+ L + A K + ++V NL +I++ + +E+F+ FGT+TSS ++ D K
Sbjct: 285 RVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGS 344
Query: 267 GFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ F P+ AT A+S ++G + +SKPL V ++ K
Sbjct: 345 GFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQRK 380
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 77/277 (27%), Positives = 134/277 (48%), Gaps = 22/277 (7%)
Query: 22 ARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAII 80
A S + L+V +L+ +V + L + F + GT+ VRV R+ S G+ +
Sbjct: 7 ATSGGATATQFGNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYV 66
Query: 81 VFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVE 140
F P +A +A E+N + KP+ + + P R G +F+KNL E
Sbjct: 67 NFTNPQDAARAIQELNYIPLYGKPIRVMYSHRDPSVRRSGAG---------NIFIKNLDE 117
Query: 141 TVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNS 200
++D + L F FGNI+ K+ D +G+SKG+GF+Q+ + ++A+KAI ++NG ++
Sbjct: 118 SIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQ 177
Query: 201 TFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSL 260
+V G + + + + ++V NL + + + + F +G ITS+ +
Sbjct: 178 VYV-------GPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVV 230
Query: 261 VSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSK 292
+ D K GF+ F A AV ++NGH F K
Sbjct: 231 MKDGEGKSKGFGFVNFENADDAARAVESLNGHKFDDK 267
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 106/202 (52%), Gaps = 12/202 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
++V NL S + L N F ++G + V ++ +S+GF + F +A +A +N
Sbjct: 201 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLN 260
Query: 97 GHLIGSKPVIITFVELKPGQRS-------KPVGPEEKQYKKDKVFVKNLVETVDEEELKS 149
GH K + + K + + + + +++ ++VKNL ++ +E+LK
Sbjct: 261 GHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKE 320
Query: 150 HFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIV 209
F FG + K++RD NG SKG GF+ F + + A +A+ +++G+MI+ +V++A+
Sbjct: 321 IFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQRK 380
Query: 210 PGKKV-----FPKVKPPLLQPA 226
++V F +V+P +QP+
Sbjct: 381 EDRRVRLQAQFSQVRPVAMQPS 402
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 54/94 (57%)
Query: 26 KENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTP 85
KE ++ + L+V NL+PS+ ++ L F FGT+ +V R+ N S+G + F TP
Sbjct: 293 KEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATP 352
Query: 86 AEAKKARVEMNGHLIGSKPVIITFVELKPGQRSK 119
EA +A +++G +I SKP+ + + K +R +
Sbjct: 353 EEATEAMSQLSGKMIESKPLYVAIAQRKEDRRVR 386
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITS----SSLVSDKHIGF--IEFIMPKHATHAVSTM 284
++V +L N+ +S+ + F + GT+ + LV+ + +G+ + F P+ A A+ +
Sbjct: 22 LYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQEL 81
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N KP++V S P V
Sbjct: 82 NYIPLYGKPIRVMYSHRDPSV 102
>gi|240256156|ref|NP_195137.5| Polyadenylate-binding protein 2 [Arabidopsis thaliana]
gi|1171978|sp|P42731.1|PABP2_ARATH RecName: Full=Polyadenylate-binding protein 2; Short=PABP-2;
Short=Poly(A)-binding protein 2
gi|304109|gb|AAA61780.1| poly(A)-binding protein [Arabidopsis thaliana]
gi|2911051|emb|CAA17561.1| poly(A)-binding protein [Arabidopsis thaliana]
gi|7270360|emb|CAB80128.1| poly(A)-binding protein [Arabidopsis thaliana]
gi|26983870|gb|AAN86187.1| putative polyadenylate-binding protein 2 (PABP2) [Arabidopsis
thaliana]
gi|332660925|gb|AEE86325.1| Polyadenylate-binding protein 2 [Arabidopsis thaliana]
Length = 629
Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 84/276 (30%), Positives = 152/276 (55%), Gaps = 15/276 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S+D++AL + F FG + +VA + + +S+G+ + + A+KA ++N
Sbjct: 126 IFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLN 185
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G L+ K V + P R + + K V+VKNL E+ +++LK+ F ++G
Sbjct: 186 GMLLNDKQVYV-----GPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGK 240
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFP 216
I +++D GKSKGFGF+ F + A +A+ +NG +V A+ ++
Sbjct: 241 ITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETEL 300
Query: 217 KVK--PPLLQPARK---NKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHI 266
+V+ L + A K + ++V NL +I++ + +E+F+ FGT+TSS ++ D K
Sbjct: 301 RVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGS 360
Query: 267 GFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ F P+ AT A+S ++G + +SKPL V ++ K
Sbjct: 361 GFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQRK 396
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 77/277 (27%), Positives = 134/277 (48%), Gaps = 22/277 (7%)
Query: 22 ARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAII 80
A S + L+V +L+ +V + L + F + GT+ VRV R+ S G+ +
Sbjct: 23 ATSGGATATQFGNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYV 82
Query: 81 VFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVE 140
F P +A +A E+N + KP+ + + P R G +F+KNL E
Sbjct: 83 NFTNPQDAARAIQELNYIPLYGKPIRVMYSHRDPSVRRSGAG---------NIFIKNLDE 133
Query: 141 TVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNS 200
++D + L F FGNI+ K+ D +G+SKG+GF+Q+ + ++A+KAI ++NG ++
Sbjct: 134 SIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQ 193
Query: 201 TFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSL 260
+V G + + + + ++V NL + + + + F +G ITS+ +
Sbjct: 194 VYV-------GPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVV 246
Query: 261 VSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSK 292
+ D K GF+ F A AV ++NGH F K
Sbjct: 247 MKDGEGKSKGFGFVNFENADDAARAVESLNGHKFDDK 283
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 106/202 (52%), Gaps = 12/202 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
++V NL S + L N F ++G + V ++ +S+GF + F +A +A +N
Sbjct: 217 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLN 276
Query: 97 GHLIGSKPVIITFVELKPGQRS-------KPVGPEEKQYKKDKVFVKNLVETVDEEELKS 149
GH K + + K + + + + +++ ++VKNL ++ +E+LK
Sbjct: 277 GHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKE 336
Query: 150 HFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIV 209
F FG + K++RD NG SKG GF+ F + + A +A+ +++G+MI+ +V++A+
Sbjct: 337 IFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQRK 396
Query: 210 PGKKV-----FPKVKPPLLQPA 226
++V F +V+P +QP+
Sbjct: 397 EDRRVRLQAQFSQVRPVAMQPS 418
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 53/92 (57%)
Query: 26 KENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTP 85
KE ++ + L+V NL+PS+ ++ L F FGT+ +V R+ N S+G + F TP
Sbjct: 309 KEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATP 368
Query: 86 AEAKKARVEMNGHLIGSKPVIITFVELKPGQR 117
EA +A +++G +I SKP+ + + K +R
Sbjct: 369 EEATEAMSQLSGKMIESKPLYVAIAQRKEDRR 400
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITS----SSLVSDKHIGF--IEFIMPKHATHAVSTM 284
++V +L N+ +S+ + F + GT+ + LV+ + +G+ + F P+ A A+ +
Sbjct: 38 LYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQEL 97
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N KP++V S P V
Sbjct: 98 NYIPLYGKPIRVMYSHRDPSV 118
>gi|384496545|gb|EIE87036.1| hypothetical protein RO3G_11747 [Rhizopus delemar RA 99-880]
Length = 616
Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 86/276 (31%), Positives = 146/276 (52%), Gaps = 17/276 (6%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+DN+AL + F FG + ++A +++ S+G+ + + T A A ++G
Sbjct: 131 IKNLDTSIDNKALHDTFSAFGNILSCKIALDESGNSKGYGFVHYETEEAADNAIKHVDGM 190
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ K V +V ++ + E+ + K V+VKNL E++++E+ K F KFG I
Sbjct: 191 LLNDKKV---YVGRHIPRKERQAKIEQIRAKFTNVYVKNLDESINDEQFKEMFSKFGPIT 247
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPG------- 211
+ DE GKSKGFGFI F +Y+ A KA+ +N +HN + +A
Sbjct: 248 SALVQTDEEGKSKGFGFINFENYEDAHKAVDTLN--ETEHNGKTLYVARAQKKTEREEEL 305
Query: 212 KKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHI 266
+K + + K L + +++ NL +I++ + + F+ +G ITS+ ++ D K
Sbjct: 306 RKQYEQAKLEKLAKYQGVNLYIKNLDDDIDDEKLRQEFSVYGVITSAKVMCDEKGTSKGF 365
Query: 267 GFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ F P AT AV+ MNG + SKP+ V L+ K
Sbjct: 366 GFVCFSSPDEATKAVTEMNGRMIGSKPIYVALAQRK 401
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 85/267 (31%), Positives = 135/267 (50%), Gaps = 20/267 (7%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+PSV L F G + +RV R+ S G+A + F+ + ++A +
Sbjct: 41 LYVGELDPSVTEAMLFEMFNMIGPVASIRVCRDAVTRRSLGYAYVNFHNIVDGERALESL 100
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI KP I + + P R G VF+KNL ++D + L F FG
Sbjct: 101 NYTLIKGKPCRIMWSQRDPSLRKTGSG---------NVFIKNLDTSIDNKALHDTFSAFG 151
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ KI DE+G SKG+GF+ + + +AA+ AI ++G ++ +V +P K+
Sbjct: 152 NILSCKIALDESGNSKGYGFVHYETEEAADNAIKHVDGMLLNDKKVYV--GRHIPRKERQ 209
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIE 270
K++ A+ ++V NL +IN+ +F+E+F++FG ITS+ + +D K GFI
Sbjct: 210 AKIEQIR---AKFTNVYVKNLDESINDEQFKEMFSKFGPITSALVQTDEEGKSKGFGFIN 266
Query: 271 FIMPKHATHAVSTMNGHVFKSKPLKVT 297
F + A AV T+N K L V
Sbjct: 267 FENYEDAHKAVDTLNETEHNGKTLYVA 293
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 97/179 (54%), Gaps = 9/179 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
++V NL+ S++++ F KFG + V ++ +S+GF I F +A KA +N
Sbjct: 222 VYVKNLDESINDEQFKEMFSKFGPITSALVQTDEEGKSKGFGFINFENYEDAHKAVDTLN 281
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKV--------FVKNLVETVDEEELK 148
K + + + K +R + + + +Q K +K+ ++KNL + +D+E+L+
Sbjct: 282 ETEHNGKTLYVARAQ-KKTEREEELRKQYEQAKLEKLAKYQGVNLYIKNLDDDIDDEKLR 340
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
F +G I K++ DE G SKGFGF+ F S A KA+ EMNGRMI +V+LA+
Sbjct: 341 QEFSVYGVITSAKVMCDEKGTSKGFGFVCFSSPDEATKAVTEMNGRMIGSKPIYVALAQ 399
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 53/88 (60%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L++ NL+ +D++ L EF +G + +V ++ S+GF + F++P EA KA
Sbjct: 320 YQGVNLYIKNLDDDIDDEKLRQEFSVYGVITSAKVMCDEKGTSKGFGFVCFSSPDEATKA 379
Query: 92 RVEMNGHLIGSKPVIITFVELKPGQRSK 119
EMNG +IGSKP+ + + K +RS+
Sbjct: 380 VTEMNGRMIGSKPIYVALAQRKEVRRSQ 407
>gi|154275140|ref|XP_001538421.1| polyadenylate-binding protein [Ajellomyces capsulatus NAm1]
gi|150414861|gb|EDN10223.1| polyadenylate-binding protein [Ajellomyces capsulatus NAm1]
Length = 732
Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 84/269 (31%), Positives = 132/269 (49%), Gaps = 25/269 (9%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+PSV L F G + +RV R+ S G+A + +N A+ ++A ++
Sbjct: 57 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 116
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI KP I + + P R G VF+KNL +D + L F FG
Sbjct: 117 NYTLIKGKPCRIMWSQRDPALRKTGQG---------NVFIKNLDTAIDNKALHDTFAAFG 167
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ +DE G SKG+GF+ + + +AA AI +NG ++ FV G +
Sbjct: 168 NILSCKVAQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFV-------GHHIA 220
Query: 216 PKVKPPLLQPARKN--KIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIG 267
K + + + N ++V NL + ++N EF ELF ++G ITS+S+ D + G
Sbjct: 221 KKDRQSKFEEMKANFTNVYVKNLDTEVSNEEFRELFEKYGEITSASISRDGETGKSRGFG 280
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
F F+ + A AV +N +K + L V
Sbjct: 281 FFYFLKHESAAAAVEELNDKEYKGQKLYV 309
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 70/231 (30%), Positives = 122/231 (52%), Gaps = 9/231 (3%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ ++DN+AL + F FG + +VA+++ S+G+ + + T A A +NG
Sbjct: 147 IKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAATNAIKHVNGM 206
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ K V + K ++SK EE + V+VKNL V EE + F K+G I
Sbjct: 207 LLNEKKVFVGHHIAKKDRQSK---FEEMKANFTNVYVKNLDTEVSNEEFRELFEKYGEIT 263
Query: 159 EVKIVRD-ENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGK--KVF 215
I RD E GKS+GFGF F +++A A+ E+N + + +V A+ + ++
Sbjct: 264 SASISRDGETGKSRGFGFFYFLKHESAAAAVEELNDKEYKGQKLYVGRAQKKHEREEELR 323
Query: 216 PKVKPPLLQPARKNK---IFVANLPSNINNSEFEELFARFGTITSSSLVSD 263
+ + ++ A K + ++V NL +I++ + +LF FG ITS+ ++ D
Sbjct: 324 KQHEAARVEKASKYQGVNLYVKNLTDDIDDEKLRDLFISFGNITSARVMRD 374
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 60/232 (25%), Positives = 96/232 (41%), Gaps = 62/232 (26%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKKARVEM 95
++V NL+ V N+ F+K+G + ++R+ + +SRGF F A A E+
Sbjct: 238 VYVKNLDTEVSNEEFRELFEKYGEITSASISRDGETGKSRGFGFFYFLKHESAAAAVEEL 297
Query: 96 NGHLIGSKPVIITFV--------ELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEEL 147
N + + + EL+ + V K Y+ ++VKNL + +D+E+L
Sbjct: 298 NDKEYKGQKLYVGRAQKKHEREEELRKQHEAARVEKASK-YQGVNLYVKNLTDDIDDEKL 356
Query: 148 KSHFIKFGNIIEVKIVRD------------------EN---------------------- 167
+ FI FGNI +++RD EN
Sbjct: 357 RDLFISFGNITSARVMRDTAGDPGSESEKEKESANKENVKDEAKKESGEEDSADKSDKVE 416
Query: 168 ------------GKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
GKSKGFGF+ F + A KA+ EMN RM+ +V+LA+
Sbjct: 417 KSDSKNATEKKLGKSKGFGFVCFSNPDEASKAVTEMNQRMVNGKPLYVALAQ 468
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 49/115 (42%), Gaps = 2/115 (1%)
Query: 5 GKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDV 64
G I A + D G+ S KE KEN E ++ A ++ K
Sbjct: 364 GNITSARVMRDTAGDPGSESEKEKESANKENVKDEAKKESGEEDSA--DKSDKVEKSDSK 421
Query: 65 RVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSK 119
K +S+GF + F+ P EA KA EMN ++ KP+ + + K ++S+
Sbjct: 422 NATEKKLGKSKGFGFVCFSNPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRKSQ 476
>gi|348570452|ref|XP_003471011.1| PREDICTED: polyadenylate-binding protein 5-like [Cavia porcellus]
Length = 382
Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 87/272 (31%), Positives = 155/272 (56%), Gaps = 12/272 (4%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S+DN++L F FG + +V + N S+G+A + F++ A A +A MN
Sbjct: 108 IFIKNLDKSIDNRSLFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMN 166
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G + ++ V + + P +R+ V +K + VFVKNL + +D+E+LK+ F ++G
Sbjct: 167 GVQLNNRQVYVGRFKF-PEERAAEVRTRDKATFTN-VFVKNLGDDMDDEKLKTLFSEYGQ 224
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFP 216
VK+VRD +GKSKGFGF+++ ++ AA+KA+++++G+ + +V A+ +
Sbjct: 225 TESVKLVRDASGKSKGFGFVRYETHDAAQKAVLDLHGKSVDGKVLYVGRAQKKIERLAEL 284
Query: 217 KVKPPLLQPARKNK-----IFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIG 267
+ + L+ K++ I++ NL I+ + +E F+ FG+I+ + ++ + K G
Sbjct: 285 RRRFERLRLKEKSRPPGVPIYIKNLDETIDEEKLKEEFSAFGSISRAKVMMEVGQGKGFG 344
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299
I F + AT AV MNG + SKPL VTL
Sbjct: 345 VICFSSFEEATKAVEEMNGRLVGSKPLHVTLG 376
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 81/267 (30%), Positives = 127/267 (47%), Gaps = 26/267 (9%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDES-RGFAIIVFNTPAEAKKARVEMNG 97
V +L+P V L +F+ G LR R+ R+ S G+ + F PA+A+ A MN
Sbjct: 22 VGDLDPEVTEDMLYKKFRPAGPLRFTRICRDPVTHSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 98 HLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNI 157
LI KP + + + R VG +F+KNL +++D L F FGNI
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVG---------NIFIKNLDKSIDNRSLFYLFSAFGNI 132
Query: 158 IEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPK 217
+ K+V D+NG SKG+ ++ F S AA +AI MNG + + +V G+ FP+
Sbjct: 133 LSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVQLNNRQVYV-------GRFKFPE 184
Query: 218 VKPPLLQPARK---NKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFI 269
+ ++ K +FV NL ++++ + + LF+ +G S LV D K GF+
Sbjct: 185 ERAAEVRTRDKATFTNVFVKNLGDDMDDEKLKTLFSEYGQTESVKLVRDASGKSKGFGFV 244
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKV 296
+ A AV ++G K L V
Sbjct: 245 RYETHDAAQKAVLDLHGKSVDGKVLYV 271
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 100/177 (56%), Gaps = 8/177 (4%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
V NL +D++ L F ++G V++ R+ + +S+GF + + T A+KA ++++G
Sbjct: 203 VKNLGDDMDDEKLKTLFSEYGQTESVKLVRDASGKSKGFGFVRYETHDAAQKAVLDLHGK 262
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDK-------VFVKNLVETVDEEELKSHF 151
+ K + + + K + ++ E+ K+K +++KNL ET+DEE+LK F
Sbjct: 263 SVDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETIDEEKLKEEF 322
Query: 152 IKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEI 208
FG+I K++ E G+ KGFG I F S++ A KA+ EMNGR++ V+L ++
Sbjct: 323 SAFGSISRAKVMM-EVGQGKGFGVICFSSFEEATKAVEEMNGRLVGSKPLHVTLGQV 378
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+++ NL+ ++D + L EF FG++ +V + +GF +I F++ EA KA EMN
Sbjct: 304 IYIKNLDETIDEEKLKEEFSAFGSISRAKVMMEVG-QGKGFGVICFSSFEEATKAVEEMN 362
Query: 97 GHLIGSKPVIITFVELK 113
G L+GSKP+ +T +++
Sbjct: 363 GRLVGSKPLHVTLGQVR 379
>gi|29841435|gb|AAP06467.1| similar to GenBank Accession Number AJ298278 poly(A) binding
protein in Rattus norvegicus [Schistosoma japonicum]
Length = 307
Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 85/275 (30%), Positives = 141/275 (51%), Gaps = 28/275 (10%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L P V + AL +F + G + RV R+ +S G+ + F P A++A +
Sbjct: 15 LYVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRQSLGYGYVNFEDPKHAEQALEVL 74
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N + +P+ I + + P R G +F+KNL ++++++EL F FG
Sbjct: 75 NYEPLMGRPIRIMWSQRDPSLRKSGKG---------NIFIKNLDKSIEQKELYDTFSFFG 125
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
I+ KIV DENG+SKG+GF+ F + AE+AI ++N +I+ +V K
Sbjct: 126 RILSCKIVMDENGQSKGYGFVHFEKEECAERAIEKINNMIIRDRVVYVG--------KFI 177
Query: 216 PKVKPPLLQPARK---NKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIG 267
PK + ARK N ++V N P +N + +E+F+ FG I S+ ++ D K G
Sbjct: 178 PKTERK--SQARKVKFNNLYVKNFPPETDNEKLKEMFSEFGEIKSACVMKDNEGKSKGFG 235
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F+ ++ P HA +AV TM+G + + L + K
Sbjct: 236 FVCYLDPDHAENAVRTMHGKEIEGRVLYCARAQRK 270
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 103/197 (52%), Gaps = 5/197 (2%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S++ + L + F FG + ++ ++N +S+G+ + F A++A ++N
Sbjct: 103 IFIKNLDKSIEQKELYDTFSFFGRILSCKIVMDENGQSKGYGFVHFEKEECAERAIEKIN 162
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
+I + V + K ++S+ ++ K + ++VKN D E+LK F +FG
Sbjct: 163 NMIIRDRVVYVGKFIPKTERKSQA-----RKVKFNNLYVKNFPPETDNEKLKEMFSEFGE 217
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFP 216
I +++D GKSKGFGF+ + AE A+ M+G+ I+ + + A+ ++
Sbjct: 218 IKSACVMKDNEGKSKGFGFVCYLDPDHAENAVRTMHGKEIEGRVLYCARAQRKEERQEEL 277
Query: 217 KVKPPLLQPARKNKIFV 233
K K + R+++++V
Sbjct: 278 KQKIEKQRAERQSRLYV 294
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 34/66 (51%)
Query: 35 NELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVE 94
N L+V N P DN+ L F +FG ++ V ++ +S+GF + + P A+ A
Sbjct: 192 NNLYVKNFPPETDNEKLKEMFSEFGEIKSACVMKDNEGKSKGFGFVCYLDPDHAENAVRT 251
Query: 95 MNGHLI 100
M+G I
Sbjct: 252 MHGKEI 257
>gi|297832034|ref|XP_002883899.1| hypothetical protein ARALYDRAFT_899764 [Arabidopsis lyrata subsp.
lyrata]
gi|297329739|gb|EFH60158.1| hypothetical protein ARALYDRAFT_899764 [Arabidopsis lyrata subsp.
lyrata]
Length = 655
Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 86/285 (30%), Positives = 154/285 (54%), Gaps = 33/285 (11%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S+D++AL + F FG + +VA + + +S+G+ + + T A+KA ++N
Sbjct: 130 IFIKNLDKSIDHKALHDTFSVFGNIISCKVAVDSSGQSKGYGFVQYETEESAQKAMGQLN 189
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDK---------VFVKNLVETVDEEEL 147
G L+ K V VGP ++ ++D V+VKNL E+ +++L
Sbjct: 190 GMLLNDKQVY--------------VGPFLRRQERDSTGNKTIFTNVYVKNLAESTTDDDL 235
Query: 148 KSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
K+ F +FG I +++D GK KGFGF+ F + A KA+ +NG+ FV A+
Sbjct: 236 KNIFGEFGKITSAVVMKDGEGKPKGFGFVNFENADDAAKAVESLNGKTFDDKEWFVGRAQ 295
Query: 208 IVPGKKVFPKVK--PPLLQPARK---NKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
+++ KV+ L + A K + ++V NL ++++ + +ELF +GT+TS ++
Sbjct: 296 KKSEREMELKVQYEQSLKEAADKFQSSNLYVKNLDDSVSDEKLKELFTPYGTVTSCKVMR 355
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
D + GF+ F P+ AT A+S M+G + ++KPL V ++ K
Sbjct: 356 DPNGMSRGSGFVAFSTPEEATKAMSEMSGKMIENKPLYVAVAQRK 400
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 76/276 (27%), Positives = 133/276 (48%), Gaps = 40/276 (14%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKK 90
+ L+V +L+P+V + L + F + G + VRV R+ S G+ + F +P +A +
Sbjct: 37 FGTTSLYVGDLDPNVTDSQLFDAFSQMGQVVSVRVCRDLATRRSLGYGYVNFTSPQDAAR 96
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A E+N + KPV + + P R G +F+KNL +++D + L
Sbjct: 97 AIQELNYIPLNGKPVRVMYSHRDPSVRRSGAG---------NIFIKNLDKSIDHKALHDT 147
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVP 210
F FGNII K+ D +G+SKG+GF+Q+ + ++A+KA+ ++NG ++ +V
Sbjct: 148 FSVFGNIISCKVAVDSSGQSKGYGFVQYETEESAQKAMGQLNGMLLNDKQVYVG------ 201
Query: 211 GKKVFPKVKPPLLQPARKNK---------IFVANLPSNINNSEFEELFARFGTITSSSLV 261
P L+ ++ ++V NL + + + + +F FG ITS+ ++
Sbjct: 202 ----------PFLRRQERDSTGNKTIFTNVYVKNLAESTTDDDLKNIFGEFGKITSAVVM 251
Query: 262 SD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSK 292
D K GF+ F A AV ++NG F K
Sbjct: 252 KDGEGKPKGFGFVNFENADDAAKAVESLNGKTFDDK 287
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSDKHI------GFIEFIMPKHATHAVSTM 284
++V +L N+ +S+ + F++ G + S + D G++ F P+ A A+ +
Sbjct: 42 LYVGDLDPNVTDSQLFDAFSQMGQVVSVRVCRDLATRRSLGYGYVNFTSPQDAARAIQEL 101
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N KP++V S P V
Sbjct: 102 NYIPLNGKPVRVMYSHRDPSV 122
>gi|168036104|ref|XP_001770548.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162678256|gb|EDQ64717.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 645
Score = 134 bits (336), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 88/280 (31%), Positives = 144/280 (51%), Gaps = 23/280 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S+DN+AL + F FGT+ +VA + + +S+G+ + F A+ A ++N
Sbjct: 114 IFIKNLDKSIDNKALHDTFAAFGTILSCKVATDPSGQSKGYGFVQFEQEESAQTAIEKVN 173
Query: 97 GHLIGSKPVII-TFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
G L+ K V + FV + +S V K + V+VKNL ++ ++ELK F +G
Sbjct: 174 GMLLNDKQVFVGPFVRRQERDQSGVVS------KFNNVYVKNLADSTTDDELKKVFEAYG 227
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
I ++RD GKSK FGF+ F A KA+ +NG+ +V A+ ++
Sbjct: 228 PISSAVVMRDNEGKSKCFGFVNFEHADDAAKAVEALNGKKFDEKEWYVGRAQKKSEREAE 287
Query: 216 PKVKPPLLQPARKNKI--------FVANLPSNINNSEFEELFARFGTITSSSLVSD---- 263
+ K + RK +I ++ NL I++ + E+F+ +GTI S ++ D
Sbjct: 288 LRAK---FEQERKERIEKYQGVNLYLKNLDDTIDDEKLREIFSEYGTIVSCKVMRDPQGQ 344
Query: 264 -KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
+ GF+ F P AT AV+ MNG + SKPL V L+ K
Sbjct: 345 SRGSGFVAFSSPDEATRAVTEMNGKMVGSKPLYVALAQRK 384
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 74/262 (28%), Positives = 127/262 (48%), Gaps = 22/262 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +LE +V L F + G + +RV R+ S G+A + +N +A +A +
Sbjct: 26 LYVGDLESTVSEAQLYEIFSQVGQVVSIRVCRDLITRRSLGYAYVNYNNAQDATRALELL 85
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N + + KP+ I F P R +F+KNL +++D + L F FG
Sbjct: 86 NFNAVNGKPIRIMFSHRDPSIRKSGTA---------NIFIKNLDKSIDNKALHDTFAAFG 136
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
I+ K+ D +G+SKG+GF+QF ++A+ AI ++NG ++ FV G V
Sbjct: 137 TILSCKVATDPSGQSKGYGFVQFEQEESAQTAIEKVNGMLLNDKQVFV-------GPFVR 189
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIE 270
+ + ++ N ++V NL + + E +++F +G I+S+ ++ D K GF+
Sbjct: 190 RQERDQSGVVSKFNNVYVKNLADSTTDDELKKVFEAYGPISSAVVMRDNEGKSKCFGFVN 249
Query: 271 FIMPKHATHAVSTMNGHVFKSK 292
F A AV +NG F K
Sbjct: 250 FEHADDAAKAVEALNGKKFDEK 271
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 99/185 (53%), Gaps = 9/185 (4%)
Query: 31 VYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKK 90
V K N ++V NL S + L F+ +G + V R+ +S+ F + F +A K
Sbjct: 199 VSKFNNVYVKNLADSTTDDELKKVFEAYGPISSAVVMRDNEGKSKCFGFVNFEHADDAAK 258
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKV--------FVKNLVETV 142
A +NG K + + K +R + + +Q +K+++ ++KNL +T+
Sbjct: 259 AVEALNGKKFDEKEWYVGRAQ-KKSEREAELRAKFEQERKERIEKYQGVNLYLKNLDDTI 317
Query: 143 DEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTF 202
D+E+L+ F ++G I+ K++RD G+S+G GF+ F S A +A+ EMNG+M+ +
Sbjct: 318 DDEKLREIFSEYGTIVSCKVMRDPQGQSRGSGFVAFSSPDEATRAVTEMNGKMVGSKPLY 377
Query: 203 VSLAE 207
V+LA+
Sbjct: 378 VALAQ 382
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 62/107 (57%), Gaps = 9/107 (8%)
Query: 26 KENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTP 85
KE + Y+ L++ NL+ ++D++ L F ++GT+ +V R+ +SRG + F++P
Sbjct: 297 KERIEKYQGVNLYLKNLDDTIDDEKLREIFSEYGTIVSCKVMRDPQGQSRGSGFVAFSSP 356
Query: 86 AEAKKARVEMNGHLIGSKPVIITFVELKPGQRSK---------PVGP 123
EA +A EMNG ++GSKP+ + + K +R++ PVGP
Sbjct: 357 DEATRAVTEMNGKMVGSKPLYVALAQRKEERRNRLQAAFAQRTPVGP 403
>gi|449281934|gb|EMC88877.1| Embryonic polyadenylate-binding protein [Columba livia]
Length = 646
Score = 134 bits (336), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 93/324 (28%), Positives = 162/324 (50%), Gaps = 39/324 (12%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KG+ + W + D G R + N + + NL+ S+DN+AL + F FG +
Sbjct: 78 KGRPIRIMWSQ---RDPGLRKSGVGN-------VFIKNLDDSIDNKALYDTFSAFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V ++N SRG+ + F T A +A MNG L+ + V + + + +R G
Sbjct: 128 CKVVCDENG-SRGYGFVHFETHEAATRAIETMNGMLLNDRKVFVGHFKSR-KEREAEFGA 185
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
+ ++ V++KN + +D++ L+ F KFG + VK++ D G+SKGFGF+ F ++
Sbjct: 186 KAMEFTN--VYIKNFGDDMDDDRLREIFSKFGKTLSVKVMMDSTGRSKGFGFVNFEKHEE 243
Query: 184 AEK----------------AIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPL 222
A+K A+ +MNG+ I +V A+ K+ F ++K
Sbjct: 244 AQKARGSSCCAQRPPLRWQAVADMNGKEINGRIVYVGRAQKRLERQSELKRKFEQIKQER 303
Query: 223 LQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHAT 278
+ + ++V NL I++ + F+ +GTITS+ ++++ K GF+ F P+ AT
Sbjct: 304 VSRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTEGGHSKGFGFVCFSSPEEAT 363
Query: 279 HAVSTMNGHVFKSKPLKVTLSGTK 302
AV+ MNG + +KPL V L+ K
Sbjct: 364 KAVTEMNGRIVSTKPLYVALAQRK 387
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 77/254 (30%), Positives = 121/254 (47%), Gaps = 37/254 (14%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F G + +RV R+ S G+A I F P +A++
Sbjct: 8 YPLASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDVATRRSLGYAYINFQQPVDAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I +P+ I + + PG R VG VF+KNL +++D + L
Sbjct: 68 ALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVG---------NVFIKNLDDSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG S+G+GF+ F +++AA +AI MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SRGYGFVHFETHEAATRAIETMNGMLLNDRKVFVGHFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE G K +++ N ++++ E+F++FG S ++
Sbjct: 178 EREAEF--GAKAM-----------EFTNVYIKNFGDDMDDDRLREIFSKFGKTLSVKVMM 224
Query: 263 D-----KHIGFIEF 271
D K GF+ F
Sbjct: 225 DSTGRSKGFGFVNF 238
>gi|432097499|gb|ELK27684.1| Polyadenylate-binding protein 4-like protein [Myotis davidii]
Length = 370
Score = 134 bits (336), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 84/270 (31%), Positives = 142/270 (52%), Gaps = 13/270 (4%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+DN+ L F FG + +V + + SRG+ + F A A +A EMNG
Sbjct: 102 IKNLDKSIDNKTLYEHFSVFGKILSSKVMCD-DQGSRGYGFVHFQNQAAADRAIEEMNGV 160
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ + FV +R + + K + +++KN + +D+E+LK F +G I+
Sbjct: 161 LLKDFRL---FVGPFKNRRDREAELQNKASEFTNIYIKNFGDEMDDEKLKEFFSHYGKIV 217
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKK 213
VK++ D +GKSKGFGF+ F +++AA++A+ +NGR I FV A+ K+
Sbjct: 218 SVKVMTDSSGKSKGFGFVSFDTHEAAKRAVDIVNGREIFGQQVFVGRAQKKAERQAELKQ 277
Query: 214 VFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGFI 269
+F + K R KI+V NL I+ + + F+ FG+I ++ + + G I
Sbjct: 278 LFEQRKQERSWRVRGTKIYVKNLDETIDEEKLRKAFSSFGSIIRVKVMQEEGRSRGFGLI 337
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299
F P+ A A++ MNG + SKP+ + L+
Sbjct: 338 CFSSPEEAARAMAEMNGRLLGSKPVNIALA 367
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 73/262 (27%), Positives = 130/262 (49%), Gaps = 21/262 (8%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y++ L+V +L P V L +F GT+ +R+ R+ S G+A + F A+A++
Sbjct: 7 YRQASLYVGDLPPDVTENMLFLKFSTVGTVLSIRICRDLVTRCSLGYAYVNFLHVADAQR 66
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I + + + + + R +G VF+KNL +++D + L H
Sbjct: 67 ALDTMNFDVIQGQSIRLMWSQRDAYLRKSGIG---------NVFIKNLDKSIDNKTLYEH 117
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVP 210
F FG I+ K++ D+ G S+G+GF+ F + AA++AI EMNG +++ FV P
Sbjct: 118 FSVFGKILSSKVMCDDQG-SRGYGFVHFQNQAAADRAIEEMNGVLLKDFRLFVG-----P 171
Query: 211 GKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KH 265
K + + + I++ N +++ + +E F+ +G I S +++D K
Sbjct: 172 FKNRRDREAELQNKASEFTNIYIKNFGDEMDDEKLKEFFSHYGKIVSVKVMTDSSGKSKG 231
Query: 266 IGFIEFIMPKHATHAVSTMNGH 287
GF+ F + A AV +NG
Sbjct: 232 FGFVSFDTHEAAKRAVDIVNGR 253
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 110/192 (57%), Gaps = 8/192 (4%)
Query: 23 RSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVF 82
R + NK + +++ N +D++ L F +G + V+V + + +S+GF + F
Sbjct: 178 REAELQNKASEFTNIYIKNFGDEMDDEKLKEFFSHYGKIVSVKVMTDSSGKSKGFGFVSF 237
Query: 83 NTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRS--KPVGPEEKQ-----YKKDKVFV 135
+T AK+A +NG I + V + + K +++ K + + KQ + K++V
Sbjct: 238 DTHEAAKRAVDIVNGREIFGQQVFVGRAQKKAERQAELKQLFEQRKQERSWRVRGTKIYV 297
Query: 136 KNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRM 195
KNL ET+DEE+L+ F FG+II VK++++E G+S+GFG I F S + A +A+ EMNGR+
Sbjct: 298 KNLDETIDEEKLRKAFSSFGSIIRVKVMQEE-GRSRGFGLICFSSPEEAARAMAEMNGRL 356
Query: 196 IQHNSTFVSLAE 207
+ ++LA+
Sbjct: 357 LGSKPVNIALAQ 368
>gi|170579093|ref|XP_001894673.1| polyadenylate-binding protein 1 [Brugia malayi]
gi|158598601|gb|EDP36463.1| polyadenylate-binding protein 1, putative [Brugia malayi]
Length = 655
Score = 134 bits (336), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 85/278 (30%), Positives = 148/278 (53%), Gaps = 15/278 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S+DN+A+ + F FG + +VA ++ S+G+ + F T A+KA ++N
Sbjct: 108 IFIKNLDKSIDNKAIYDTFSMFGNILSCKVANDEESNSKGYGFVHFETEESAQKAIEKVN 167
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G L+ K V + + + R + +G +++ V++KN + +D+E L+ F KFG
Sbjct: 168 GMLLEGKKVYVGKFQPRTA-RLREMGETARRFTN--VYIKNFADELDKEALEKLFSKFGK 224
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMI--QHNSTFVSLAE-----IV 209
I ++ D +GKSKGFGF+ F + + AEKA+ EM+ + +V A+
Sbjct: 225 ITSAAVMVDADGKSKGFGFVAFENPEDAEKAVTEMHEYELPGTERKLYVCRAQKKNERSA 284
Query: 210 PGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----K 264
K+ + + K +Q + ++V NL +N+ ++ F +G ITS+ ++ D K
Sbjct: 285 ELKRRYEQQKVERMQRYQGVNLYVKNLDDTVNDDILKQNFEAYGKITSAKVMCDDNGRSK 344
Query: 265 HIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ F P AT AV+ MNG + +KPL V L+ K
Sbjct: 345 GFGFVCFEKPDEATKAVTEMNGKMMCTKPLYVALAQRK 382
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 80/268 (29%), Positives = 137/268 (51%), Gaps = 36/268 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 15 YPMASLYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRDAITRRSLGYAYVNFQQPADAER 74
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN ++ KP+ I + + P R G +F+KNL +++D + +
Sbjct: 75 ALDTMNFDMMYGKPIRIMWSQRDPSMRRSGAG---------NIFIKNLDKSIDNKAIYDT 125
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVP 210
F FGNI+ K+ DE SKG+GF+ F + ++A+KAI ++NG +++
Sbjct: 126 FSMFGNILSCKVANDEESNSKGYGFVHFETEESAQKAIEKVNGMLLE------------- 172
Query: 211 GKKVF-PKVKP------PLLQPARK-NKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
GKKV+ K +P + + AR+ +++ N ++ E+LF++FG ITS++++
Sbjct: 173 GKKVYVGKFQPRTARLREMGETARRFTNVYIKNFADELDKEALEKLFSKFGKITSAAVMV 232
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMN 285
D K GF+ F P+ A AV+ M+
Sbjct: 233 DADGKSKGFGFVAFENPEDAEKAVTEMH 260
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 52/93 (55%)
Query: 27 ENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPA 86
E + Y+ L+V NL+ +V++ L F+ +G + +V + N S+GF + F P
Sbjct: 296 ERMQRYQGVNLYVKNLDDTVNDDILKQNFEAYGKITSAKVMCDDNGRSKGFGFVCFEKPD 355
Query: 87 EAKKARVEMNGHLIGSKPVIITFVELKPGQRSK 119
EA KA EMNG ++ +KP+ + + K ++++
Sbjct: 356 EATKAVTEMNGKMMCTKPLYVALAQRKEDRKAQ 388
>gi|170574509|ref|XP_001892845.1| polyadenylate-binding protein 4 [Brugia malayi]
gi|158601405|gb|EDP38326.1| polyadenylate-binding protein 4, putative [Brugia malayi]
Length = 462
Score = 134 bits (336), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 86/279 (30%), Positives = 149/279 (53%), Gaps = 17/279 (6%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S+DN+A+ + F FG + +VA ++ S+G+ + F T A+KA ++N
Sbjct: 108 IFIKNLDKSIDNKAIYDTFSMFGNILSCKVANDEELNSKGYGFVHFETEESAQKAIEKVN 167
Query: 97 GHLIGSKPVIITFVELKPGQ-RSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
G L+ K V + + +P R + +G +++ V++KN + +D+E L+ F KFG
Sbjct: 168 GMLLEGKKVYVG--KFQPRMARLREMGETTRRFTN--VYIKNFADELDKEALEKLFFKFG 223
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMI--QHNSTFVSLAE-----I 208
I ++ D +GKSKGFGF+ F + + AEKA+ EM+ + +V A+
Sbjct: 224 KITSAAVMVDADGKSKGFGFVAFENPEDAEKAVTEMHEYELPGTERKLYVCRAQKKNERS 283
Query: 209 VPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----- 263
K+ + + K +Q + ++V NL +N+ ++ F +G ITS+ ++ D
Sbjct: 284 AELKRRYEQQKVERMQRYQGVNLYVKNLDDTVNDDILKQNFEAYGKITSAKVMCDDNGRS 343
Query: 264 KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
K GF+ F P AT AV+ MNG + +KPL V L+ K
Sbjct: 344 KGFGFVCFEKPDEATKAVTEMNGKMMCTKPLYVALAQRK 382
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 79/268 (29%), Positives = 134/268 (50%), Gaps = 36/268 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 15 YPMASLYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRDAITRRSLGYAYVNFQQPADAER 74
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN ++ KP+ I + + P R G +F+KNL +++D + +
Sbjct: 75 ALDTMNFDMMYGKPIRIMWSQRDPSMRRSGAG---------NIFIKNLDKSIDNKAIYDT 125
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVP 210
F FGNI+ K+ DE SKG+GF+ F + ++A+KAI ++NG +++
Sbjct: 126 FSMFGNILSCKVANDEELNSKGYGFVHFETEESAQKAIEKVNGMLLE------------- 172
Query: 211 GKKVF-PKVKPPLLQ-------PARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
GKKV+ K +P + + R +++ N ++ E+LF +FG ITS++++
Sbjct: 173 GKKVYVGKFQPRMARLREMGETTRRFTNVYIKNFADELDKEALEKLFFKFGKITSAAVMV 232
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMN 285
D K GF+ F P+ A AV+ M+
Sbjct: 233 DADGKSKGFGFVAFENPEDAEKAVTEMH 260
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 52/93 (55%)
Query: 27 ENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPA 86
E + Y+ L+V NL+ +V++ L F+ +G + +V + N S+GF + F P
Sbjct: 296 ERMQRYQGVNLYVKNLDDTVNDDILKQNFEAYGKITSAKVMCDDNGRSKGFGFVCFEKPD 355
Query: 87 EAKKARVEMNGHLIGSKPVIITFVELKPGQRSK 119
EA KA EMNG ++ +KP+ + + K ++++
Sbjct: 356 EATKAVTEMNGKMMCTKPLYVALAQRKEDRKAQ 388
>gi|66800163|ref|XP_629007.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
gi|74996426|sp|Q54BM2.1|PAP1A_DICDI RecName: Full=Polyadenylate-binding protein 1-A; Short=PABP-1-A;
Short=Poly(A)-binding protein, cytoplasmic 1-A
gi|60462370|gb|EAL60591.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
Length = 565
Score = 134 bits (336), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 85/272 (31%), Positives = 143/272 (52%), Gaps = 18/272 (6%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ +D++AL + F FG + +V + + S+GF + + T A KA ++NG
Sbjct: 102 IKNLDKGIDHKALYDTFSAFGNILSCKVVTDDGNSSKGFGFVHYETQESADKAIAKVNGM 161
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
+I + V + P + SK G + + K VF KNL E V ++LK ++G I
Sbjct: 162 MINGQKVFV-----GPFKSSKERG-QPTEVKFTNVFFKNLSEDVGPDQLKELLQQYGEIT 215
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKV--FP 216
+ I+ D+ GKSKGFGF F S +AA+ + NG++ + A+ KK+
Sbjct: 216 NITIMADDKGKSKGFGFANFESAEAAKNVVENENGKIFHGKPIYAGRAQ----KKIEREA 271
Query: 217 KVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIE 270
++K + +++ N+ +I+N + E+F++FGTITS+ ++ D K GF+
Sbjct: 272 ELKHTFETKYQGVNLYIKNIDDSIDNDKLREVFSQFGTITSAIVMKDDKATTSKGFGFVC 331
Query: 271 FIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
+ P AT AV+ MNG + +KPL V L+ K
Sbjct: 332 YTAPDEATRAVTEMNGRMIGTKPLYVALAQRK 363
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 80/264 (30%), Positives = 131/264 (49%), Gaps = 23/264 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDE-SRGFAIIVFNTPAEAKKARVEM 95
L+V +L P V Q L F + G + ++RV R+ N S +A + + A+A++A +
Sbjct: 12 LYVGDLLPEVSEQHLFEIFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNGADAERALDTL 71
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N I K I + + P R VG VF+KNL + +D + L F FG
Sbjct: 72 NNTPIRGKACRIMWSQRDPSLRKSGVG---------NVFIKNLDKGIDHKALYDTFSAFG 122
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+V D+ SKGFGF+ + + ++A+KAI ++NG MI FV P K
Sbjct: 123 NILSCKVVTDDGNSSKGFGFVHYETQESADKAIAKVNGMMINGQKVFVG-----PFKSSK 177
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIE 270
+ +P + + +F NL ++ + +EL ++G IT+ ++++D K GF
Sbjct: 178 ERGQPTEV---KFTNVFFKNLSEDVGPDQLKELLQQYGEITNITIMADDKGKSKGFGFAN 234
Query: 271 FIMPKHATHAVSTMNGHVFKSKPL 294
F + A + V NG +F KP+
Sbjct: 235 FESAEAAKNVVENENGKIFHGKPI 258
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKK 90
Y+ L++ N++ S+DN L F +FGT+ V ++ K S+GF + + P EA +
Sbjct: 281 YQGVNLYIKNIDDSIDNDKLREVFSQFGTITSAIVMKDDKATTSKGFGFVCYTAPDEATR 340
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSK 119
A EMNG +IG+KP+ + + K +R++
Sbjct: 341 AVTEMNGRMIGTKPLYVALAQRKDIRRAQ 369
>gi|239615396|gb|EEQ92383.1| polyadenylate-binding protein [Ajellomyces dermatitidis ER-3]
gi|327356743|gb|EGE85600.1| polyadenylate-binding protein [Ajellomyces dermatitidis ATCC 18188]
Length = 783
Score = 134 bits (336), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 84/269 (31%), Positives = 131/269 (48%), Gaps = 25/269 (9%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+ SV L F G + +RV R+ S G+A + +N A+ ++A ++
Sbjct: 57 LYVGELDSSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 116
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI KP I + + P R G VF+KNL +D + L F FG
Sbjct: 117 NYTLIKGKPCRIMWSQRDPALRKTGQG---------NVFIKNLDTAIDNKALHDTFAAFG 167
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ +DE G SKG+GF+ + + +AA AI +NG ++ FV G +
Sbjct: 168 NILSCKVAQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFV-------GHHIA 220
Query: 216 PKVKPPLLQPARKN--KIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIG 267
K + + + N ++V NL + + N EF ELF ++G ITS+S+ D + G
Sbjct: 221 KKDRQSKFEEMKANFTNVYVKNLDTEVTNEEFRELFGKYGDITSASITHDSETGKSRGFG 280
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
F+ F+ + A AV +N FK + L V
Sbjct: 281 FVNFVKHESAAAAVEELNDKEFKGQKLYV 309
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 76/266 (28%), Positives = 133/266 (50%), Gaps = 19/266 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK W + D R + N + + NL+ ++DN+AL + F FG +
Sbjct: 122 KGKPCRIMWSQ---RDPALRKTGQGN-------VFIKNLDTAIDNKALHDTFAAFGNILS 171
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+VA+++ S+G+ + + T A A +NG L+ K V + K ++SK
Sbjct: 172 CKVAQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSK---F 228
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRD-ENGKSKGFGFIQFFSYK 182
EE + V+VKNL V EE + F K+G+I I D E GKS+GFGF+ F ++
Sbjct: 229 EEMKANFTNVYVKNLDTEVTNEEFRELFGKYGDITSASITHDSETGKSRGFGFVNFVKHE 288
Query: 183 AAEKAIIEMNGRMIQHNSTFVSLAEIVPGK--KVFPKVKPPLLQPARKNK---IFVANLP 237
+A A+ E+N + + +V A+ + ++ + + ++ A K + ++V NL
Sbjct: 289 SAAAAVEELNDKEFKGQKLYVGRAQKKHEREEELRKQHEAARVEKASKYQGVNLYVKNLT 348
Query: 238 SNINNSEFEELFARFGTITSSSLVSD 263
+I++ + +LF FG ITS+ ++ D
Sbjct: 349 DDIDDEKLRDLFIGFGNITSARVMRD 374
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 94/232 (40%), Gaps = 62/232 (26%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKKARVEM 95
++V NL+ V N+ F K+G + + + + +SRGF + F A A E+
Sbjct: 238 VYVKNLDTEVTNEEFRELFGKYGDITSASITHDSETGKSRGFGFVNFVKHESAAAAVEEL 297
Query: 96 NGHLIGSKPVIITFV--------ELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEEL 147
N + + + EL+ + V K Y+ ++VKNL + +D+E+L
Sbjct: 298 NDKEFKGQKLYVGRAQKKHEREEELRKQHEAARVEKASK-YQGVNLYVKNLTDDIDDEKL 356
Query: 148 KSHFIKFGNIIEVKIVRD------------------EN---------------------- 167
+ FI FGNI +++RD EN
Sbjct: 357 RDLFIGFGNITSARVMRDTIADAGSESEKEKEISNKENVKEEAKKESAEEESSDKSDKAE 416
Query: 168 ------------GKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
GKSKGFGF+ F + A KA+ EMN RM+ +V+LA+
Sbjct: 417 KSDSKKTLEKKLGKSKGFGFVCFSNPDEASKAVTEMNQRMVNGKPLYVALAQ 468
Score = 39.3 bits (90), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 27/46 (58%)
Query: 74 SRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSK 119
S+GF + F+ P EA KA EMN ++ KP+ + + K ++S+
Sbjct: 431 SKGFGFVCFSNPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRKSQ 476
>gi|261199248|ref|XP_002626025.1| polyadenylate-binding protein [Ajellomyces dermatitidis SLH14081]
gi|239594233|gb|EEQ76814.1| polyadenylate-binding protein [Ajellomyces dermatitidis SLH14081]
Length = 783
Score = 134 bits (336), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 84/269 (31%), Positives = 131/269 (48%), Gaps = 25/269 (9%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+ SV L F G + +RV R+ S G+A + +N A+ ++A ++
Sbjct: 57 LYVGELDSSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 116
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI KP I + + P R G VF+KNL +D + L F FG
Sbjct: 117 NYTLIKGKPCRIMWSQRDPALRKTGQG---------NVFIKNLDTAIDNKALHDTFAAFG 167
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ +DE G SKG+GF+ + + +AA AI +NG ++ FV G +
Sbjct: 168 NILSCKVAQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFV-------GHHIA 220
Query: 216 PKVKPPLLQPARKN--KIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIG 267
K + + + N ++V NL + + N EF ELF ++G ITS+S+ D + G
Sbjct: 221 KKDRQSKFEEMKANFTNVYVKNLDTKVTNEEFRELFGKYGDITSASITHDSETGKSRGFG 280
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
F+ F+ + A AV +N FK + L V
Sbjct: 281 FVNFVKHESAAAAVEELNDKEFKGQKLYV 309
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 76/266 (28%), Positives = 133/266 (50%), Gaps = 19/266 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK W + D R + N + + NL+ ++DN+AL + F FG +
Sbjct: 122 KGKPCRIMWSQ---RDPALRKTGQGN-------VFIKNLDTAIDNKALHDTFAAFGNILS 171
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+VA+++ S+G+ + + T A A +NG L+ K V + K ++SK
Sbjct: 172 CKVAQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSK---F 228
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRD-ENGKSKGFGFIQFFSYK 182
EE + V+VKNL V EE + F K+G+I I D E GKS+GFGF+ F ++
Sbjct: 229 EEMKANFTNVYVKNLDTKVTNEEFRELFGKYGDITSASITHDSETGKSRGFGFVNFVKHE 288
Query: 183 AAEKAIIEMNGRMIQHNSTFVSLAEIVPGK--KVFPKVKPPLLQPARKNK---IFVANLP 237
+A A+ E+N + + +V A+ + ++ + + ++ A K + ++V NL
Sbjct: 289 SAAAAVEELNDKEFKGQKLYVGRAQKKHEREEELRKQHEAARVEKASKYQGVNLYVKNLT 348
Query: 238 SNINNSEFEELFARFGTITSSSLVSD 263
+I++ + +LF FG ITS+ ++ D
Sbjct: 349 DDIDDEKLRDLFIGFGNITSARVMRD 374
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 94/232 (40%), Gaps = 62/232 (26%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKKARVEM 95
++V NL+ V N+ F K+G + + + + +SRGF + F A A E+
Sbjct: 238 VYVKNLDTKVTNEEFRELFGKYGDITSASITHDSETGKSRGFGFVNFVKHESAAAAVEEL 297
Query: 96 NGHLIGSKPVIITFV--------ELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEEL 147
N + + + EL+ + V K Y+ ++VKNL + +D+E+L
Sbjct: 298 NDKEFKGQKLYVGRAQKKHEREEELRKQHEAARVEKASK-YQGVNLYVKNLTDDIDDEKL 356
Query: 148 KSHFIKFGNIIEVKIVRD------------------EN---------------------- 167
+ FI FGNI +++RD EN
Sbjct: 357 RDLFIGFGNITSARVMRDTIADAGSESEKEKEISNKENVKEEAKKESAEEESSDKSDKAE 416
Query: 168 ------------GKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
GKSKGFGF+ F + A KA+ EMN RM+ +V+LA+
Sbjct: 417 KSDSKKTLEKKLGKSKGFGFVCFSNPDEASKAVTEMNQRMVNGKPLYVALAQ 468
Score = 39.3 bits (90), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 27/46 (58%)
Query: 74 SRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSK 119
S+GF + F+ P EA KA EMN ++ KP+ + + K ++S+
Sbjct: 431 SKGFGFVCFSNPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRKSQ 476
>gi|406602185|emb|CCH46236.1| Polyadenylate-binding protein, cytoplasmic and nuclear
[Wickerhamomyces ciferrii]
Length = 652
Score = 134 bits (336), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 93/309 (30%), Positives = 153/309 (49%), Gaps = 23/309 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KG+ + W + D R N E N + + NL P++DN+AL + F FG +
Sbjct: 127 KGQPIRIMWSQ---RDPAKRRNGEGN-------VFIKNLHPAIDNKALHDTFSAFGRILS 176
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+VA + +S+GF + F +P A+ A +NG L+ + V +V +R +
Sbjct: 177 CKVATDNFGQSKGFGFVHFESPEAAQAAIENVNGMLLNNNEV---YVGPHVARRDRQSKL 233
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
EE V+VKN+ EEE+K F FG + + +D GKS+GF F+ + ++A
Sbjct: 234 EEVIKSFTNVYVKNIDLEASEEEVKELFTPFGTVTSFYLEKDAEGKSRGFAFVNYEEHEA 293
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A K+I +N + + +V A+ + KK + + L ++ +FV NL
Sbjct: 294 AVKSIESLNDQDYKGKKLYVGRAQKKSERLEELKKQYEAARIEKLTKSQGVNLFVKNLDD 353
Query: 239 NINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKP 293
+I++ + +E F FGTI+S ++ D K GF+ F P+ A+ A+S MN H+ KP
Sbjct: 354 SIDDEKLKEEFQSFGTISSVKVMIDESGKSKGFGFVSFSSPEEASRAISEMNQHMLAGKP 413
Query: 294 LKVTLSGTK 302
L V L+ K
Sbjct: 414 LYVALAQRK 422
Score = 114 bits (284), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 78/268 (29%), Positives = 131/268 (48%), Gaps = 24/268 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V LEPS++ L F G + +RV R+ S G+A + ++ + +KA E+
Sbjct: 62 LYVGELEPSINEALLFEIFSPIGQVSSIRVCRDALTKRSLGYAYVNYHNVKDGEKAIDEL 121
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N ++ +P+ I + + P +R G VF+KNL +D + L F FG
Sbjct: 122 NYSVVKGQPIRIMWSQRDPAKRRNGEG---------NVFIKNLHPAIDNKALHDTFSAFG 172
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
I+ K+ D G+SKGFGF+ F S +AA+ AI +NG ++ +N +V G V
Sbjct: 173 RILSCKVATDNFGQSKGFGFVHFESPEAAQAAIENVNGMLLNNNEVYV-------GPHVA 225
Query: 216 PKVKPPLLQPARKN--KIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGF 268
+ + L+ K+ ++V N+ + E +ELF FGT+TS L D + F
Sbjct: 226 RRDRQSKLEEVIKSFTNVYVKNIDLEASEEEVKELFTPFGTVTSFYLEKDAEGKSRGFAF 285
Query: 269 IEFIMPKHATHAVSTMNGHVFKSKPLKV 296
+ + + A ++ ++N +K K L V
Sbjct: 286 VNYEEHEAAVKSIESLNDQDYKGKKLYV 313
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 54/83 (65%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L V NL+ S+D++ L EF+ FGT+ V+V +++ +S+GF + F++P EA +A EMN
Sbjct: 346 LFVKNLDDSIDDEKLKEEFQSFGTISSVKVMIDESGKSKGFGFVSFSSPEEASRAISEMN 405
Query: 97 GHLIGSKPVIITFVELKPGQRSK 119
H++ KP+ + + K +RS+
Sbjct: 406 QHMLAGKPLYVALAQRKDVRRSQ 428
>gi|312067233|ref|XP_003136646.1| hypothetical protein LOAG_01058 [Loa loa]
gi|307768188|gb|EFO27422.1| hypothetical protein LOAG_01058 [Loa loa]
Length = 655
Score = 134 bits (336), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 85/278 (30%), Positives = 148/278 (53%), Gaps = 15/278 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S+DN+A+ + F FG + +VA ++ S+G+ + F T A+KA ++N
Sbjct: 108 IFIKNLDKSIDNKAIYDTFSMFGNILSCKVANDEESNSKGYGFVHFETEESAQKAIEKVN 167
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G L+ K V + + + R + +G +++ V++KN + +D+E L+ F KFG
Sbjct: 168 GMLLEGKKVYVGKFQPRTA-RLREMGETARRFTN--VYIKNFADELDKEALEKLFSKFGK 224
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMI--QHNSTFVSLAE-----IV 209
I ++ D +GKSKGFGF+ F + + AEKA+ EM+ + +V A+
Sbjct: 225 ITSAAVMVDADGKSKGFGFVAFENPEDAEKAVTEMHEYELPGTERKLYVCRAQKKNERSA 284
Query: 210 PGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----K 264
K+ + + K +Q + ++V NL +N+ ++ F +G ITS+ ++ D K
Sbjct: 285 ELKRRYEQQKVERMQRYQGVNLYVKNLDDTVNDDILKQNFEAYGKITSAKVMCDDNGRSK 344
Query: 265 HIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ F P AT AV+ MNG + +KPL V L+ K
Sbjct: 345 GFGFVCFEKPDEATKAVTEMNGKMMCTKPLYVALAQRK 382
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 80/268 (29%), Positives = 137/268 (51%), Gaps = 36/268 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 15 YPMASLYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRDAITRRSLGYAYVNFQQPADAER 74
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN ++ KP+ I + + P R G +F+KNL +++D + +
Sbjct: 75 ALDTMNFDMMYGKPIRIMWSQRDPSMRRSGAG---------NIFIKNLDKSIDNKAIYDT 125
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVP 210
F FGNI+ K+ DE SKG+GF+ F + ++A+KAI ++NG +++
Sbjct: 126 FSMFGNILSCKVANDEESNSKGYGFVHFETEESAQKAIEKVNGMLLE------------- 172
Query: 211 GKKVF-PKVKP------PLLQPARK-NKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
GKKV+ K +P + + AR+ +++ N ++ E+LF++FG ITS++++
Sbjct: 173 GKKVYVGKFQPRTARLREMGETARRFTNVYIKNFADELDKEALEKLFSKFGKITSAAVMV 232
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMN 285
D K GF+ F P+ A AV+ M+
Sbjct: 233 DADGKSKGFGFVAFENPEDAEKAVTEMH 260
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 52/93 (55%)
Query: 27 ENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPA 86
E + Y+ L+V NL+ +V++ L F+ +G + +V + N S+GF + F P
Sbjct: 296 ERMQRYQGVNLYVKNLDDTVNDDILKQNFEAYGKITSAKVMCDDNGRSKGFGFVCFEKPD 355
Query: 87 EAKKARVEMNGHLIGSKPVIITFVELKPGQRSK 119
EA KA EMNG ++ +KP+ + + K ++++
Sbjct: 356 EATKAVTEMNGKMMCTKPLYVALAQRKEDRKAQ 388
>gi|317106694|dbj|BAJ53195.1| JHL03K20.4 [Jatropha curcas]
Length = 642
Score = 134 bits (336), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 88/285 (30%), Positives = 148/285 (51%), Gaps = 33/285 (11%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+++ NL+ ++DN+AL + F FG++ +VA + +S G+ + F+ AK A ++N
Sbjct: 119 IYIKNLDKAIDNKALHDTFSAFGSILSCKVATDSLGQSLGYGFVQFDNEESAKNAIDKLN 178
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGP----EEKQYKKDK-----VFVKNLVETVDEEEL 147
G L+ K V VGP +E++ DK V+VKNL ET EE+L
Sbjct: 179 GMLLNDKQVY--------------VGPFLRKQERESAIDKATFNNVYVKNLSETTTEEDL 224
Query: 148 KSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
K F ++G I ++RD NGKS+ FGF+ F + A +++ +NG+ +V A+
Sbjct: 225 KKIFGEYGTITSAVVMRDGNGKSRCFGFVNFENPDDAAQSVEALNGKTFDEKEWYVGKAQ 284
Query: 208 IVPGKKV-----FPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
++V F + + + ++V NL +I + + +ELF+ FGTITS ++
Sbjct: 285 KKSEREVELKGRFEQTLKETVDKFQGLNLYVKNLDDSITDDKLKELFSEFGTITSCKVMR 344
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
D + GF+ F + A+ A++ MNG + SKPL V L+ K
Sbjct: 345 DPNGVSRGSGFVAFSTAEEASRALTEMNGKMVVSKPLYVALAQRK 389
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 76/283 (26%), Positives = 134/283 (47%), Gaps = 24/283 (8%)
Query: 16 ISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDES 74
+S G SN N V L+V +LE +V L + F + G + +RV R+ + S
Sbjct: 12 VSAPNGVVSNGVNQFV--PTSLYVGDLEQNVTETQLYDLFNQHGQVVSIRVCRDLTSRRS 69
Query: 75 RGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVF 134
G+ + +N +A +A +N + KP+ I + P R G ++
Sbjct: 70 LGYGYVNYNNVHDAAQAIEVLNFTPVNGKPIRIMYSYRDPTIRKSGTG---------NIY 120
Query: 135 VKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGR 194
+KNL + +D + L F FG+I+ K+ D G+S G+GF+QF + ++A+ AI ++NG
Sbjct: 121 IKNLDKAIDNKALHDTFSAFGSILSCKVATDSLGQSLGYGFVQFDNEESAKNAIDKLNGM 180
Query: 195 MIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGT 254
++ +V G + + + + A N ++V NL + +++F +GT
Sbjct: 181 LLNDKQVYV-------GPFLRKQERESAIDKATFNNVYVKNLSETTTEEDLKKIFGEYGT 233
Query: 255 ITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSK 292
ITS+ ++ D + GF+ F P A +V +NG F K
Sbjct: 234 ITSAVVMRDGNGKSRCFGFVNFENPDDAAQSVEALNGKTFDEK 276
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 98/181 (54%), Gaps = 9/181 (4%)
Query: 35 NELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVE 94
N ++V NL + + L F ++GT+ V R+ N +SR F + F P +A ++
Sbjct: 208 NNVYVKNLSETTTEEDLKKIFGEYGTITSAVVMRDGNGKSRCFGFVNFENPDDAAQSVEA 267
Query: 95 MNGHLIGSKPVII--------TFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEE 146
+NG K + VELK G+ + + +++ ++VKNL +++ +++
Sbjct: 268 LNGKTFDEKEWYVGKAQKKSEREVELK-GRFEQTLKETVDKFQGLNLYVKNLDDSITDDK 326
Query: 147 LKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLA 206
LK F +FG I K++RD NG S+G GF+ F + + A +A+ EMNG+M+ +V+LA
Sbjct: 327 LKELFSEFGTITSCKVMRDPNGVSRGSGFVAFSTAEEASRALTEMNGKMVVSKPLYVALA 386
Query: 207 E 207
+
Sbjct: 387 Q 387
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 49/83 (59%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L+V NL+ S+ + L F +FGT+ +V R+ N SRG + F+T EA +A EMN
Sbjct: 313 LYVKNLDDSITDDKLKELFSEFGTITSCKVMRDPNGVSRGSGFVAFSTAEEASRALTEMN 372
Query: 97 GHLIGSKPVIITFVELKPGQRSK 119
G ++ SKP+ + + K +R++
Sbjct: 373 GKMVVSKPLYVALAQRKEERRAR 395
>gi|341884731|gb|EGT40666.1| CBN-PAB-2 protein [Caenorhabditis brenneri]
Length = 707
Score = 133 bits (335), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 94/313 (30%), Positives = 157/313 (50%), Gaps = 31/313 (9%)
Query: 5 GKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDV 64
G+ + W + D AR N + + NL+ +DN+++ + F FG +
Sbjct: 130 GRPMRIMWSQ---RDPAARRAGNGN-------IFIKNLDRVIDNKSIYDTFSLFGNILSC 179
Query: 65 RVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPE 124
+VA + + S+G+ + F T A A+ A ++NG L+ K V + + + QR K +G
Sbjct: 180 KVATDDDGNSKGYGFVHFETEASAQTAIEKVNGMLLSDKKVFVGKFQPR-AQRMKELG-- 236
Query: 125 EKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAA 184
E K VFVKN E +DE +LK F K+G I ++ D GK KGFGF+ + +AA
Sbjct: 237 ESGLKYTNVFVKNFGEHLDEAKLKEMFSKYGEINSAVVMTDAEGKPKGFGFVAYADPEAA 296
Query: 185 EKAIIEMNGRMIQHNSTFVSL----------AEIVPGKKVFPKVKPPLLQPARKNKIFVA 234
KA+ ++N +++ +S+ AE+ K+ + +K +Q + ++V
Sbjct: 297 SKAVDDLNESILEGTELKLSVCRAQKKSERSAEL---KRKYEALKQERVQRYQGVNLYVK 353
Query: 235 NLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVF 289
N+ + + FA+FGTITS+ ++ D K GF+ F P+ AT AV+ MN +
Sbjct: 354 NIEEELTDEGLRAHFAQFGTITSAKVMVDENGRSKGFGFVCFEKPEEATAAVTEMNSKMI 413
Query: 290 KSKPLKVTLSGTK 302
+KPL V L+ K
Sbjct: 414 GAKPLYVALAQRK 426
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 75/277 (27%), Positives = 140/277 (50%), Gaps = 20/277 (7%)
Query: 29 NKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVAR-NKNDESRGFAIIVFNTPAE 87
N Y L++ +L V L +F G + +RV R N + S G+A + F PA+
Sbjct: 56 NATYSMASLYIGDLHGDVTESMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPAD 115
Query: 88 AKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEEL 147
A++A MN +I +P+ I + + P R G +F+KNL +D + +
Sbjct: 116 AERALDTMNFEIIHGRPMRIMWSQRDPAARRAGNG---------NIFIKNLDRVIDNKSI 166
Query: 148 KSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
F FGNI+ K+ D++G SKG+GF+ F + +A+ AI ++NG ++ FV +
Sbjct: 167 YDTFSLFGNILSCKVATDDDGNSKGYGFVHFETEASAQTAIEKVNGMLLSDKKVFV--GK 224
Query: 208 IVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD---- 263
P + ++ L + +FV N +++ ++ +E+F+++G I S+ +++D
Sbjct: 225 FQPRAQRMKELGESGL---KYTNVFVKNFGEHLDEAKLKEMFSKYGEINSAVVMTDAEGK 281
Query: 264 -KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299
K GF+ + P+ A+ AV +N + + LK+++
Sbjct: 282 PKGFGFVAYADPEAASKAVDDLNESILEGTELKLSVC 318
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 53/94 (56%)
Query: 26 KENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTP 85
+E + Y+ L+V N+E + ++ L F +FGT+ +V ++N S+GF + F P
Sbjct: 339 QERVQRYQGVNLYVKNIEEELTDEGLRAHFAQFGTITSAKVMVDENGRSKGFGFVCFEKP 398
Query: 86 AEAKKARVEMNGHLIGSKPVIITFVELKPGQRSK 119
EA A EMN +IG+KP+ + + K +R++
Sbjct: 399 EEATAAVTEMNSKMIGAKPLYVALAQRKEDRRAQ 432
>gi|160333518|ref|NP_001103836.1| poly A binding protein, cytoplasmic 5 [Rattus norvegicus]
gi|149055477|gb|EDM07061.1| rCG38154 [Rattus norvegicus]
Length = 382
Score = 133 bits (335), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 88/281 (31%), Positives = 156/281 (55%), Gaps = 24/281 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S+DN+AL F FG + +V + N S+G+A + F++ A A +A MN
Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMN 166
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G + ++ V + + P +R+ V ++ + VFVKN + +D+E+LK F ++G
Sbjct: 167 GVRLNNRQVYVGRFKF-PEERAAEVRTRDRATFTN-VFVKNFGDDIDDEKLKKLFSEYGP 224
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPG 211
VK++RD GKSKGFGF+++ +++AA+KA++E++G+ I V A+ +
Sbjct: 225 TESVKVIRDATGKSKGFGFVRYETHEAAQKAVLELHGKSIDGKVLCVGRAQKKIERLAEL 284
Query: 212 KKVFPKVK------PPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-- 263
++ F ++K PP + I++ NL IN+ + +E F+ FG+I+ + ++ +
Sbjct: 285 RRRFERLKLKDKTRPPGVP------IYIKNLDETINDEKLKEEFSLFGSISRAKVMMEVG 338
Query: 264 --KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
K G + F + A+ AV+ MNG V SK L VTL +
Sbjct: 339 QGKGFGVVCFSSFEEASKAVNEMNGRVVGSKTLHVTLGQAR 379
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 86/309 (27%), Positives = 141/309 (45%), Gaps = 37/309 (11%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDES-RGFAIIVFNTPAEAKKARVEMNG 97
V +L+P V L +F+ G LR R+ R+ S G+ + F PA+A+ A MN
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 98 HLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNI 157
LI KP + + + R VG +F+KNL +++D L F FGNI
Sbjct: 82 DLINGKPFRLMWSQPDDHLRKSGVG---------NIFIKNLDKSIDNRALFYLFSAFGNI 132
Query: 158 IEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPK 217
+ K+V D+NG SKG+ ++ F S AA +AI MNG + + +V G+ FP+
Sbjct: 133 LSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYV-------GRFKFPE 184
Query: 218 VKPPLLQP---ARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFI 269
+ ++ A +FV N +I++ + ++LF+ +G S ++ D K GF+
Sbjct: 185 ERAAEVRTRDRATFTNVFVKNFGDDIDDEKLKKLFSEYGPTESVKVIRDATGKSKGFGFV 244
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK-----------PGVSITNPTKAPKKPA 318
+ + A AV ++G K L V + K + + + T+ P P
Sbjct: 245 RYETHEAAQKAVLELHGKSIDGKVLCVGRAQKKIERLAELRRRFERLKLKDKTRPPGVPI 304
Query: 319 YIDEVKNVI 327
YI + I
Sbjct: 305 YIKNLDETI 313
>gi|452843390|gb|EME45325.1| hypothetical protein DOTSEDRAFT_71152 [Dothistroma septosporum
NZE10]
Length = 785
Score = 133 bits (335), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 85/266 (31%), Positives = 129/266 (48%), Gaps = 20/266 (7%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+PSV L F G + +RV R+ S G+A + +N+ + ++A E+
Sbjct: 58 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSANDGERALEEL 117
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI KP I + + P R G VF+KNL +D + L F FG
Sbjct: 118 NYTLIKGKPCRIMWSQRDPALRKTGQG---------NVFIKNLDGAIDNKALHDTFAAFG 168
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ +DE+G SKG+GF+ + + +AA AI +NG ++ FV +P K
Sbjct: 169 NILSCKVAQDEHGNSKGYGFVHYETAEAANSAIKSVNGMLLNEKKVFV--GHHIPKKDRM 226
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKH-----IGFIE 270
K + A I+V N+ + EF LF ++G ITS+SL D+ GF+
Sbjct: 227 SKFEE---MKANFTNIYVKNIDPEATDDEFRALFEKYGDITSASLAHDQEGKSRGFGFVN 283
Query: 271 FIMPKHATHAVSTMNGHVFKSKPLKV 296
+I + A AV +N FK + L V
Sbjct: 284 YIRHEDANKAVEELNNSDFKGQALYV 309
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 62/233 (26%), Positives = 119/233 (51%), Gaps = 14/233 (6%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ ++DN+AL + F FG + +VA++++ S+G+ + + T A A +NG
Sbjct: 148 IKNLDGAIDNKALHDTFAAFGNILSCKVAQDEHGNSKGYGFVHYETAEAANSAIKSVNGM 207
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ K V + K + SK EE + ++VKN+ ++E ++ F K+G+I
Sbjct: 208 LLNEKKVFVGHHIPKKDRMSKF---EEMKANFTNIYVKNIDPEATDDEFRALFEKYGDIT 264
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLA--------EIVP 210
+ D+ GKS+GFGF+ + ++ A KA+ E+N + + +V A E+
Sbjct: 265 SASLAHDQEGKSRGFGFVNYIRHEDANKAVEELNNSDFKGQALYVGRAQKKHEREEEL-- 322
Query: 211 GKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD 263
+K + + + ++V NL I++ E ++F +G ITS+ ++ D
Sbjct: 323 -RKQYEAQRQEKSAKYQGVNLYVKNLADEIDDDELRKIFEPYGAITSAKVMRD 374
Score = 41.6 bits (96), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 27/40 (67%)
Query: 168 GKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
GKSKGFGF+ F + A KA+ E+N +MI +V+LA+
Sbjct: 439 GKSKGFGFVCFSNPDEATKAVTELNQKMIHGKPLYVALAQ 478
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 13/111 (11%)
Query: 9 EASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVAR 68
E S +E SDDE + + N+ ++ E V ++ +D + E K G
Sbjct: 389 EKSDEEKQSDDEEKKDEGDKNEEGEKKEGDVEDVIKKLDTITIGGEKKILG--------- 439
Query: 69 NKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSK 119
+S+GF + F+ P EA KA E+N +I KP+ + + K ++S+
Sbjct: 440 ----KSKGFGFVCFSNPDEATKAVTELNQKMIHGKPLYVALAQRKEVRKSQ 486
>gi|119113388|ref|XP_309558.3| AGAP011092-PA [Anopheles gambiae str. PEST]
gi|116131767|gb|EAA05186.3| AGAP011092-PA [Anopheles gambiae str. PEST]
Length = 634
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 89/275 (32%), Positives = 150/275 (54%), Gaps = 16/275 (5%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ +DN+A+ + F FG + +VA+++ +S+G+ + F T A + ++NG
Sbjct: 94 IKNLDKKIDNKAMYDTFSAFGNILSCKVAQDEKGQSKGYGFVHFETEESANTSIEKVNGM 153
Query: 99 LIGSKPVII-TFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNI 157
L+ K V + F+ K +R K +G + K + V+VKN E + EE L+ F KFG I
Sbjct: 154 LLNEKKVYVGRFISRK--EREKELGEKAKLFTN--VYVKNFGEDLTEEALRDMFEKFGPI 209
Query: 158 IEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNST-FVSLAE-----IVPG 211
+++ ++GKS+GFGF+ F + AE+A+ ++NG+ + +V A+ +
Sbjct: 210 TSHRVM-TKDGKSRGFGFVAFEKPEDAEEAVQKLNGKELSDGKVLYVGRAQKKNERQMEL 268
Query: 212 KKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIG 267
K+ F ++K L ++V NL I++ + FA +GTITS+ ++ D K G
Sbjct: 269 KRRFEQLKMERLTRYHGVNLYVKNLDDTIDDERLRKEFAPYGTITSAKVMLDEGRSKGFG 328
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F+ F P AT AV+ MNG + SKPL V L+ K
Sbjct: 329 FVCFSAPDEATKAVTEMNGRIVGSKPLYVALAQRK 363
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 73/257 (28%), Positives = 126/257 (49%), Gaps = 23/257 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L + L +F G + +RV R+ S G+A + F PA+A++A M
Sbjct: 4 LYVGDLHSDITEATLFEKFSSAGPVLSIRVCRDLITRRSLGYAYVNFQQPADAERALDTM 63
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N I +P+ I + + P R VG VF+KNL + +D + + F FG
Sbjct: 64 NFDPIKGRPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKKIDNKAMYDTFSAFG 114
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ +DE G+SKG+GF+ F + ++A +I ++NG ++ +V G+ +
Sbjct: 115 NILSCKVAQDEKGQSKGYGFVHFETEESANTSIEKVNGMLLNEKKVYV-------GRFIS 167
Query: 216 PKVKPPLLQPARK--NKIFVANLPSNINNSEFEELFARFGTITSSSLVS----DKHIGFI 269
K + L K ++V N ++ ++F +FG ITS +++ + GF+
Sbjct: 168 RKEREKELGEKAKLFTNVYVKNFGEDLTEEALRDMFEKFGPITSHRVMTKDGKSRGFGFV 227
Query: 270 EFIMPKHATHAVSTMNG 286
F P+ A AV +NG
Sbjct: 228 AFEKPEDAEEAVQKLNG 244
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 99/179 (55%), Gaps = 10/179 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
++V N + +AL + F+KFG + RV K+ +SRGF + F P +A++A ++N
Sbjct: 185 VYVKNFGEDLTEEALRDMFEKFGPITSHRVM-TKDGKSRGFGFVAFEKPEDAEEAVQKLN 243
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKV--------FVKNLVETVDEEELK 148
G + V+ K +R + +Q K +++ +VKNL +T+D+E L+
Sbjct: 244 GKELSDGKVLYVGRAQKKNERQMELKRRFEQLKMERLTRYHGVNLYVKNLDDTIDDERLR 303
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
F +G I K++ DE G+SKGFGF+ F + A KA+ EMNGR++ +V+LA+
Sbjct: 304 KEFAPYGTITSAKVMLDE-GRSKGFGFVCFSAPDEATKAVTEMNGRIVGSKPLYVALAQ 361
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L+V NL+ ++D++ L EF +GT+ +V ++ S+GF + F+ P EA KA EMN
Sbjct: 288 LYVKNLDDTIDDERLRKEFAPYGTITSAKVMLDEG-RSKGFGFVCFSAPDEATKAVTEMN 346
Query: 97 GHLIGSKPVIITFVELKPGQRS 118
G ++GSKP+ + + K ++S
Sbjct: 347 GRIVGSKPLYVALAQRKEERKS 368
>gi|224105583|ref|XP_002313862.1| predicted protein [Populus trichocarpa]
gi|222850270|gb|EEE87817.1| predicted protein [Populus trichocarpa]
Length = 642
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 88/276 (31%), Positives = 146/276 (52%), Gaps = 15/276 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ ++D++AL + F FG + +VA + + +S+G+ + F++ A+KA ++N
Sbjct: 115 IFIKNLDKAIDHKALHDTFSVFGNILSCKVATDPSGQSKGYGFVQFDSEEAAQKAIEKLN 174
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G L+ K V + P R + + + + VFVKNL ET EE+L F +FG
Sbjct: 175 GMLLNDKQVYV-----GPFLRKQERDTATDKTRFNNVFVKNLSETTAEEDLNKAFGEFGT 229
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEI-----VPG 211
I V ++RD +GKS+ FGF+ F + A KA +NG+ FV A+ V
Sbjct: 230 ITSVVVMRDGDGKSRCFGFVNFENADDAAKAAEALNGKKFDDKEWFVGKAQKKYEREVEL 289
Query: 212 KKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHI 266
K+ F + + +++ NL +I + + +ELF+ FGTITS ++ D +
Sbjct: 290 KQRFEQSMKEAADKFQGANLYIKNLDDSIGDEKIKELFSPFGTITSCKVMRDPNGISRGS 349
Query: 267 GFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ F P+ A+ A+ MNG + SKPL V L+ K
Sbjct: 350 GFVAFSTPEEASRALLEMNGKMVASKPLYVALAQRK 385
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/271 (28%), Positives = 128/271 (47%), Gaps = 22/271 (8%)
Query: 28 NNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPA 86
NN + L+V +LE +V + L + F + G + VRV R+ + S G+ + ++ P
Sbjct: 18 NNPNFVTTSLYVGDLEANVTDSQLYDLFNQVGQVVSVRVCRDLTSRRSLGYGYVNYSNPQ 77
Query: 87 EAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEE 146
+A +A +N + P+ + + P R G +F+KNL + +D +
Sbjct: 78 DAARALEVLNFTPVNGSPIRVMYSHRDPSVRKSGAG---------NIFIKNLDKAIDHKA 128
Query: 147 LKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLA 206
L F FGNI+ K+ D +G+SKG+GF+QF S +AA+KAI ++NG ++ +V
Sbjct: 129 LHDTFSVFGNILSCKVATDPSGQSKGYGFVQFDSEEAAQKAIEKLNGMLLNDKQVYV--- 185
Query: 207 EIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD--- 263
G + + + R N +FV NL + + F FGTITS ++ D
Sbjct: 186 ----GPFLRKQERDTATDKTRFNNVFVKNLSETTAEEDLNKAFGEFGTITSVVVMRDGDG 241
Query: 264 --KHIGFIEFIMPKHATHAVSTMNGHVFKSK 292
+ GF+ F A A +NG F K
Sbjct: 242 KSRCFGFVNFENADDAAKAAEALNGKKFDDK 272
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 97/182 (53%), Gaps = 11/182 (6%)
Query: 35 NELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVE 94
N + V NL + + L F +FGT+ V V R+ + +SR F + F +A KA
Sbjct: 204 NNVFVKNLSETTAEEDLNKAFGEFGTITSVVVMRDGDGKSRCFGFVNFENADDAAKAAEA 263
Query: 95 MNGHLIGSKPVII--------TFVELKPGQR-SKPVGPEEKQYKKDKVFVKNLVETVDEE 145
+NG K + VELK QR + + +++ +++KNL +++ +E
Sbjct: 264 LNGKKFDDKEWFVGKAQKKYEREVELK--QRFEQSMKEAADKFQGANLYIKNLDDSIGDE 321
Query: 146 ELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL 205
++K F FG I K++RD NG S+G GF+ F + + A +A++EMNG+M+ +V+L
Sbjct: 322 KIKELFSPFGTITSCKVMRDPNGISRGSGFVAFSTPEEASRALLEMNGKMVASKPLYVAL 381
Query: 206 AE 207
A+
Sbjct: 382 AQ 383
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 57/97 (58%)
Query: 23 RSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVF 82
+S KE ++ L++ NL+ S+ ++ + F FGT+ +V R+ N SRG + F
Sbjct: 295 QSMKEAADKFQGANLYIKNLDDSIGDEKIKELFSPFGTITSCKVMRDPNGISRGSGFVAF 354
Query: 83 NTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSK 119
+TP EA +A +EMNG ++ SKP+ + + K +R++
Sbjct: 355 STPEEASRALLEMNGKMVASKPLYVALAQRKEDRRAR 391
>gi|193592023|ref|XP_001950415.1| PREDICTED: polyadenylate-binding protein 1-like [Acyrthosiphon
pisum]
Length = 630
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 88/275 (32%), Positives = 152/275 (55%), Gaps = 15/275 (5%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ ++DN+A+ + F FG + +VA+++ +S+G+ + F+ A ++ ++NG
Sbjct: 94 IKNLDKNIDNKAMYDTFSAFGNILSCKVAQDETGQSKGYGFVHFDMEQSATQSIEKVNGM 153
Query: 99 LIGSKPVII-TFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNI 157
L+ K V + FV K R K +G + K + V++KN+ E V+++EL F K+G+I
Sbjct: 154 LLNGKKVFVGRFVGRK--DREKELGQKAKLFTN--VYIKNIDENVNDKELFEMFEKYGSI 209
Query: 158 IEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNST-FVSLAEIVPGKKVFP 216
K++ ++G S+GFGF+ F K AEKA+ E++G+ T +V A+ ++
Sbjct: 210 TSCKVMFKDDGSSRGFGFVAFEDPKEAEKAVSELHGKESPEGKTYYVGRAQKKAERQNEL 269
Query: 217 KVKPPLLQPARKNK-----IFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIG 267
K K + R N+ ++V NL I++ F+ FGTITS+ ++ D K G
Sbjct: 270 KRKFEQYKIERMNRYQGINLYVKNLDDTIDDEHLRREFSVFGTITSAKVMMDDGRSKGFG 329
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F+ F P+ AT AV+ MN + +KPL V L+ K
Sbjct: 330 FVCFSSPEEATKAVTEMNNRIVGTKPLYVALAQRK 364
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 80/258 (31%), Positives = 130/258 (50%), Gaps = 24/258 (9%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVAR-NKNDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L V L +F G + VRV R N S G+A + F A+A+ A M
Sbjct: 4 LYVGDLHSDVTEAMLFEKFSAVGVVVSVRVCRDNITRRSLGYAYVNFQNMADAECALDTM 63
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N ++ P+ I + + P R VG VF+KNL + +D + + F FG
Sbjct: 64 NFEILNGCPMRIMWSQRDPSLRKSGVG---------NVFIKNLDKNIDNKAMYDTFSAFG 114
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ +DE G+SKG+GF+ F ++A ++I ++NG ++ FV G+ V
Sbjct: 115 NILSCKVAQDETGQSKGYGFVHFDMEQSATQSIEKVNGMLLNGKKVFV-------GRFVG 167
Query: 216 PKVKPPLLQPARK--NKIFVANLPSNINNSEFEELFARFGTITSSSLV-----SDKHIGF 268
K + L K +++ N+ N+N+ E E+F ++G+ITS ++ S + GF
Sbjct: 168 RKDREKELGQKAKLFTNVYIKNIDENVNDKELFEMFEKYGSITSCKVMFKDDGSSRGFGF 227
Query: 269 IEFIMPKHATHAVSTMNG 286
+ F PK A AVS ++G
Sbjct: 228 VAFEDPKEAEKAVSELHG 245
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 112/222 (50%), Gaps = 22/222 (9%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+++ N++ +V+++ L F+K+G++ +V + SRGF + F P EA+KA E++
Sbjct: 185 VYIKNIDENVNDKELFEMFEKYGSITSCKVMFKDDGSSRGFGFVAFEDPKEAEKAVSELH 244
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDK--------VFVKNLVETVDEEELK 148
G K +R + + +QYK ++ ++VKNL +T+D+E L+
Sbjct: 245 GKESPEGKTYYVGRAQKKAERQNELKRKFEQYKIERMNRYQGINLYVKNLDDTIDDEHLR 304
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEI 208
F FG I K++ D+ G+SKGFGF+ F S + A KA+ EMN R++ +V+LA+
Sbjct: 305 REFSVFGTITSAKVMMDD-GRSKGFGFVCFSSPEEATKAVTEMNNRIVGTKPLYVALAQR 363
Query: 209 VPGKKVFPKVK-------------PPLLQPARKNKIFVANLP 237
+K + P+ QP + FV +P
Sbjct: 364 KEERKAHLNAQYLQSNTNMRMQSIGPIYQPGASSGYFVPTIP 405
>gi|302920668|ref|XP_003053121.1| hypothetical protein NECHADRAFT_59146 [Nectria haematococca mpVI
77-13-4]
gi|256734061|gb|EEU47408.1| hypothetical protein NECHADRAFT_59146 [Nectria haematococca mpVI
77-13-4]
Length = 742
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 134/269 (49%), Gaps = 26/269 (9%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+P+V L F + G + +RV R+ S G+A + +N+ A+ +KA E+
Sbjct: 62 LYVGELDPAVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTADGEKALEEL 121
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N +I +P I + + P R G VF+KNL +D + L F FG
Sbjct: 122 NYTIIKGRPCRIMWSQRDPALRKTGQG---------NVFIKNLDVAIDNKALHDTFAAFG 172
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKV- 214
NI+ K+ +DENG SKG+GF+ + + +AA +AI +NG ++ +V +P K
Sbjct: 173 NILSCKVAQDENGNSKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYV--GHHIPKKDRQ 230
Query: 215 --FPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKH-----IG 267
F ++K A ++V N+ +F +LF ++G +TSSSL D+ G
Sbjct: 231 SKFEEMK------ANFTNVYVKNISPEATEDDFRQLFEQYGDVTSSSLARDQEGKSRGFG 284
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
F+ F + A AV +NG F+ + L V
Sbjct: 285 FVNFTTHESAAKAVDELNGKDFRGQDLYV 313
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 89/362 (24%), Positives = 162/362 (44%), Gaps = 82/362 (22%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KG+ W + D R + N + + NL+ ++DN+AL + F FG +
Sbjct: 127 KGRPCRIMWSQ---RDPALRKTGQGN-------VFIKNLDVAIDNKALHDTFAAFGNILS 176
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+VA+++N S+G+ + + T A +A +NG L+ K V + K ++SK
Sbjct: 177 CKVAQDENGNSKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKF--- 233
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
EE + V+VKN+ E++ + F ++G++ + RD+ GKS+GFGF+ F ++++
Sbjct: 234 EEMKANFTNVYVKNISPEATEDDFRQLFEQYGDVTSSSLARDQEGKSRGFGFVNFTTHES 293
Query: 184 AEKAIIEMNGRMIQHNSTFVSLA--------EIVPGKKVFPKVKPPLLQPARKNK---IF 232
A KA+ E+NG+ + +V A E+ +K + + L+ A K + ++
Sbjct: 294 AAKAVDELNGKDFRGQDLYVGRAQKKHEREEEL---RKSYEAAR---LEKANKYQGVNLY 347
Query: 233 VANLPSNINNSEFEELFARFGTITSSSLVSD----------------------------- 263
+ NL ++++ + ++F+ FG ITS+ ++ D
Sbjct: 348 IKNLDDDVDDDKLRQMFSEFGPITSAKVMRDTPVENEDEKPAEEKKEEQEDKDKENKPEE 407
Query: 264 -----------------------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSG 300
K GF+ F P AT AV+ MN + +KPL V L+
Sbjct: 408 TKEGEEGAEKKAEKKSDKKLGKSKGFGFVCFSNPDDATKAVAEMNQRMVSNKPLYVALAQ 467
Query: 301 TK 302
K
Sbjct: 468 RK 469
Score = 37.7 bits (86), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 28/46 (60%)
Query: 74 SRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSK 119
S+GF + F+ P +A KA EMN ++ +KP+ + + K ++S+
Sbjct: 430 SKGFGFVCFSNPDDATKAVAEMNQRMVSNKPLYVALAQRKDVRKSQ 475
>gi|296226907|ref|XP_002759113.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Callithrix jacchus]
Length = 604
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 99/332 (29%), Positives = 154/332 (46%), Gaps = 61/332 (18%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHPYVTEAMLFEKFSPAGPILSIRVCRDMITHRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPV-----GPE-------EKQYKKDK------ 132
A MN +I KPV I + + P R V GP+ E Q ++
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVVCDENGPKGYGFVHFETQEAAERAIEKMN 127
Query: 133 ---------------------------------VFVKNLVETVDEEELKSHFIKFGNIIE 159
V++KN E +D+E LK F KFG +
Sbjct: 128 GMLLNDRKVFVGPFKSRKEREAELGARAKEFTNVYIKNFGEDMDDEHLKDLFGKFGPALS 187
Query: 160 VKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKV 214
VK++ DE+GKSKGFGF+ F ++ A+KA+ MNG+ + +V A+ K+
Sbjct: 188 VKVMTDESGKSKGFGFVSFERHEDAQKAVDVMNGKELNGKQIYVGRAQKKVERQTELKRK 247
Query: 215 FPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGFIE 270
F ++K + + ++V NL I++ + F+ FGTITS+ ++ + K GF+
Sbjct: 248 FEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVC 307
Query: 271 FIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F P+ AT AV+ MNG + +KPL V L+ K
Sbjct: 308 FSSPEEATKAVTEMNGRIVATKPLYVALAQRK 339
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 74/250 (29%), Positives = 124/250 (49%), Gaps = 36/250 (14%)
Query: 21 GARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAII 80
GAR+ KE VY + N +D++ L + F KFG V+V +++ +S+GF +
Sbjct: 152 GARA-KEFTNVY------IKNFGEDMDDEHLKDLFGKFGPALSVKVMTDESGKSKGFGFV 204
Query: 81 VFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKV------- 133
F +A+KA MNG + K + + + K +R + + +Q K+D++
Sbjct: 205 SFERHEDAQKAVDVMNGKELNGKQIYVGRAQKK-VERQTELKRKFEQMKQDRITRYQGVN 263
Query: 134 -FVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMN 192
+VKNL + +D+E L+ F FG I K++ E G+SKGFGF+ F S + A KA+ EMN
Sbjct: 264 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMN 322
Query: 193 GRMIQHNSTFVSLAEIVPGKKVF-----------------PKVKPPLLQPARKNKIFVAN 235
GR++ +V+LA+ ++ P + P QPA + F+A
Sbjct: 323 GRIVATKPLYVALAQRKEERQAHLTNLYMQRMASVRAVPNPLINP--YQPAPPSAYFMAA 380
Query: 236 LPSNINNSEF 245
+P N + +
Sbjct: 381 IPQTQNRAAY 390
>gi|297274127|ref|XP_002800732.1| PREDICTED: polyadenylate-binding protein 1 [Macaca mulatta]
Length = 605
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 97/332 (29%), Positives = 154/332 (46%), Gaps = 61/332 (18%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F + G + +RV R+ S +A + F P +A++
Sbjct: 8 YPTASLYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRSSSYAYVNFQHPKDAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEK------------------------ 126
A MN +I KPV I + + P R V +E
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRRSGVVCDENGSKGYGFVHFETHEAAERAIEKMN 127
Query: 127 ------------QYKKDK---------------VFVKNLVETVDEEELKSHFIKFGNIIE 159
++K K V++KN E +D+E LK F KFG +
Sbjct: 128 GTLLNDRKVFVGRFKSRKEREAELGAKAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALS 187
Query: 160 VKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKV 214
VK++ DE+GKSKGFGF+ F ++ A+KA+ EMNG+ + +V A+ K+
Sbjct: 188 VKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYVGRAQKKVERQTELKRK 247
Query: 215 FPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGFIE 270
F ++K + + ++V NL +I++ + F+ FGTITS+ ++ + K GF+
Sbjct: 248 FEQMKQDRITRYQVVNLYVKNLDDDIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVC 307
Query: 271 FIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F P+ AT AV+ MNG + +KPL V L+ K
Sbjct: 308 FSSPEEATKAVTEMNGRIVATKPLYVALAQRK 339
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 119/234 (50%), Gaps = 29/234 (12%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+++ N +D++ L + F KFG V+V +++ +S+GF + F +A+KA EMN
Sbjct: 161 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 220
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKV--------FVKNLVETVDEEELK 148
G + K + + + K +R + + +Q K+D++ +VKNL + +D+E L+
Sbjct: 221 GKELNGKHIYVGRAQKK-VERQTELKRKFEQMKQDRITRYQVVNLYVKNLDDDIDDERLR 279
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEI 208
F FG I K++ E G+SKGFGF+ F S + A KA+ EMNGR++ +V+LA+
Sbjct: 280 KAFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 338
Query: 209 VPGKKVF-----------------PKVKPPLLQPARKNKIFVANLPSNINNSEF 245
++ P + P QPA + F+A +P N + +
Sbjct: 339 KEERQAHLTNEYMQRMASVRAVPNPVINP--YQPAPPSGYFMAAVPQTQNRAAY 390
Score = 42.4 bits (98), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTM 284
++V +L ++ + E F+R G I S + D ++ F PK A A+ TM
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRSSSYAYVNFQHPKDAERALDTM 72
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N V K KP+++ S P +
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSL 93
>gi|126342328|ref|XP_001373103.1| PREDICTED: polyadenylate-binding protein 1-like [Monodelphis
domestica]
Length = 942
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 94/308 (30%), Positives = 158/308 (51%), Gaps = 23/308 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK + W + D R + N + + NLE S+DN+AL F FG +
Sbjct: 383 KGKPVRIMWSQ---RDPSLRKSGVGN-------IFIKNLEKSIDNKALYKTFSAFGNILS 432
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V ++N S+G+ + F A KA +MNG + + V + + + +R +G
Sbjct: 433 CKVISDENG-SKGYGFVHFENQQAADKAIEKMNGVRLNNLKVYVGRFKSR-KERELELGA 490
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
+++ V++KN E +D + L F KFG+ + VK++ DE+GKSKGFGF+ + ++
Sbjct: 491 RAREFTN--VYIKNFGEDMDNDRLTEVFGKFGHALSVKVMTDESGKSKGFGFVSYEKHED 548
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A++A+ EMNG+ +V A+ K+ F +VK + ++V NL
Sbjct: 549 AQRAVDEMNGKEFNGKRIYVGRAQKKGERQTELKRHFEQVKQERSSRYQGVNLYVKNLDD 608
Query: 239 NINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
+I++ + F+ FGTITS+ ++ + + GF+ F P+ A AVS MNG + +KPL
Sbjct: 609 SIDDERLRKAFSPFGTITSAKVMMEGGHSRGFGFVCFSAPEEAAKAVSEMNGKLVATKPL 668
Query: 295 KVTLSGTK 302
V L+ K
Sbjct: 669 YVALAQRK 676
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 81/267 (30%), Positives = 133/267 (49%), Gaps = 23/267 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L V L +F G + +RV R+ S G+A + F A+A++ M
Sbjct: 318 LYVGDLHHDVTEAMLYEKFSPAGPILSIRVCRDMLTRRSLGYAYVNFQQLADAERVLETM 377
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N +I KPV I + + P R VG +F+KNL +++D + L F FG
Sbjct: 378 NLDVIKGKPVRIMWSQRDPSLRKSGVG---------NIFIKNLEKSIDNKALYKTFSAFG 428
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K++ DENG SKG+GF+ F + +AA+KAI +MNG + + +V + +++
Sbjct: 429 NILSCKVISDENG-SKGYGFVHFENQQAADKAIEKMNGVRLNNLKVYVGRFKSRKEREL- 486
Query: 216 PKVKPPLLQPARK-NKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFI 269
L AR+ +++ N +++N E+F +FG S +++D K GF+
Sbjct: 487 -----ELGARAREFTNVYIKNFGEDMDNDRLTEVFGKFGHALSVKVMTDESGKSKGFGFV 541
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKV 296
+ + A AV MNG F K + V
Sbjct: 542 SYEKHEDAQRAVDEMNGKEFNGKRIYV 568
>gi|356514396|ref|XP_003525892.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 630
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 91/306 (29%), Positives = 154/306 (50%), Gaps = 32/306 (10%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ ++D++AL + F FG + ++A + + +S+G + F + A+ A ++NG
Sbjct: 116 IKNLDKAIDHKALFDTFSAFGNILSCKIATDASGQSKGHGFVQFESEESAQNAIDKLNGM 175
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
LI K V + + K + S G K + V+VKNL E E +LKS F ++G I
Sbjct: 176 LINDKQVYVGPFQRKQDRESALSGT-----KFNNVYVKNLFEATTEADLKSIFGEYGAIT 230
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKV 218
++RD +GKSKGFGF+ F + + A KA+ +NG+ +V A+ +++ K
Sbjct: 231 SAVVMRDVDGKSKGFGFVNFANVEDAAKAVEALNGKNFDGKEWYVGKAQKKSERELELKE 290
Query: 219 K-----PPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGF 268
+ + +++ NL ++ + E ELF+ FGTITS ++ D + GF
Sbjct: 291 RNEQSTKETVDKYHGTNLYIKNLDDSVGDEELRELFSEFGTITSCKVMRDPSGISRGSGF 350
Query: 269 IEFIMPKHATHAVSTMNGHVFKSKPLKVTL---------------SGTKPGVSITNPTKA 313
+ F + + A+ A+ MNG + KPL V L S +P V+IT P +
Sbjct: 351 VAFSIAEGASWALGEMNGKMVAGKPLYVALAQRKEDRRARLQAQFSQARP-VAIT-PNVS 408
Query: 314 PKKPAY 319
P+ P Y
Sbjct: 409 PRMPLY 414
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 74/262 (28%), Positives = 124/262 (47%), Gaps = 22/262 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L+ V++ L + F + + VR+ R+ +S G+ + F+ +A KA +
Sbjct: 26 LYVGDLDHDVNDPQLYDLFNQVAQVVSVRICRDVATQQSLGYGYVNFSNARDAAKAIDVL 85
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N + K + I + P R VF+KNL + +D + L F FG
Sbjct: 86 NFTPLNGKTIRIMYSIRDPSARKSGAA---------NVFIKNLDKAIDHKALFDTFSAFG 136
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ KI D +G+SKG GF+QF S ++A+ AI ++NG +I +V G
Sbjct: 137 NILSCKIATDASGQSKGHGFVQFESEESAQNAIDKLNGMLINDKQVYV-------GPFQR 189
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIE 270
+ + L + N ++V NL ++ + +F +G ITS+ ++ D K GF+
Sbjct: 190 KQDRESALSGTKFNNVYVKNLFEATTEADLKSIFGEYGAITSAVVMRDVDGKSKGFGFVN 249
Query: 271 FIMPKHATHAVSTMNGHVFKSK 292
F + A AV +NG F K
Sbjct: 250 FANVEDAAKAVEALNGKNFDGK 271
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 100/197 (50%), Gaps = 13/197 (6%)
Query: 18 DDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGF 77
D E A S + N VY V NL + L + F ++G + V R+ + +S+GF
Sbjct: 192 DRESALSGTKFNNVY------VKNLFEATTEADLKSIFGEYGAITSAVVMRDVDGKSKGF 245
Query: 78 AIIVFNTPAEAKKARVEMNGHLIGSKPVII------TFVELKPGQRSKPVGPEE-KQYKK 130
+ F +A KA +NG K + + EL+ +R++ E +Y
Sbjct: 246 GFVNFANVEDAAKAVEALNGKNFDGKEWYVGKAQKKSERELELKERNEQSTKETVDKYHG 305
Query: 131 DKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIE 190
+++KNL ++V +EEL+ F +FG I K++RD +G S+G GF+ F + A A+ E
Sbjct: 306 TNLYIKNLDDSVGDEELRELFSEFGTITSCKVMRDPSGISRGSGFVAFSIAEGASWALGE 365
Query: 191 MNGRMIQHNSTFVSLAE 207
MNG+M+ +V+LA+
Sbjct: 366 MNGKMVAGKPLYVALAQ 382
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 51/97 (52%)
Query: 23 RSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVF 82
+S KE Y L++ NL+ SV ++ L F +FGT+ +V R+ + SRG + F
Sbjct: 294 QSTKETVDKYHGTNLYIKNLDDSVGDEELRELFSEFGTITSCKVMRDPSGISRGSGFVAF 353
Query: 83 NTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSK 119
+ A A EMNG ++ KP+ + + K +R++
Sbjct: 354 SIAEGASWALGEMNGKMVAGKPLYVALAQRKEDRRAR 390
>gi|29336045|ref|NP_444344.1| polyadenylate-binding protein 5 [Mus musculus]
gi|26341316|dbj|BAC34320.1| unnamed protein product [Mus musculus]
gi|76827669|gb|AAI07363.1| Poly(A) binding protein, cytoplasmic 5 [Mus musculus]
gi|76828194|gb|AAI07364.1| Poly(A) binding protein, cytoplasmic 5 [Mus musculus]
gi|148701502|gb|EDL33449.1| poly A binding protein, cytoplasmic 5 [Mus musculus]
Length = 381
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 84/275 (30%), Positives = 150/275 (54%), Gaps = 12/275 (4%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ ++DN+AL F FG + +V + N S+G+A + F++ A A +A MN
Sbjct: 107 IFIKNLDKTIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMN 165
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G + ++ V + + P +R+ V E+ + VFVKN + +D+E+L F ++G
Sbjct: 166 GVRLNNRQVYVGRFKF-PEERAAEVRTRERATFTN-VFVKNFGDDIDDEKLNKLFSEYGP 223
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPG 211
VK++RD GKSKGFGF+++ +++AA+KA++E++G+ I V A+ +
Sbjct: 224 TESVKVIRDATGKSKGFGFVRYETHEAAQKAVLELHGKSIDGKVLCVGRAQKKIERLAEL 283
Query: 212 KKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIG 267
++ F ++K I++ NL IN+ + +E F+ FG+I+ + ++ + K G
Sbjct: 284 RRRFERLKLKEKNRPSGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGKGFG 343
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
+ F + A AV MNG + SK L VTL +
Sbjct: 344 VVCFSSFEEACKAVDEMNGRIIGSKTLHVTLGQAR 378
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 79/267 (29%), Positives = 127/267 (47%), Gaps = 26/267 (9%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDES-RGFAIIVFNTPAEAKKARVEMNG 97
V +L+P V L +F+ G LR R+ R+ S G+ + F PA+A+ A MN
Sbjct: 21 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 80
Query: 98 HLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNI 157
LI KP + + + R VG +F+KNL +T+D L F FGNI
Sbjct: 81 DLINGKPFRLMWSQPDDRLRKSGVG---------NIFIKNLDKTIDNRALFYLFSAFGNI 131
Query: 158 IEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPK 217
+ K+V D+NG SKG+ ++ F S AA +AI MNG + + +V G+ FP+
Sbjct: 132 LSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYV-------GRFKFPE 183
Query: 218 VKPPLLQPARK---NKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFI 269
+ ++ + +FV N +I++ + +LF+ +G S ++ D K GF+
Sbjct: 184 ERAAEVRTRERATFTNVFVKNFGDDIDDEKLNKLFSEYGPTESVKVIRDATGKSKGFGFV 243
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKV 296
+ + A AV ++G K L V
Sbjct: 244 RYETHEAAQKAVLELHGKSIDGKVLCV 270
>gi|56758360|gb|AAW27320.1| SJCHGC06322 protein [Schistosoma japonicum]
Length = 721
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 83/259 (32%), Positives = 137/259 (52%), Gaps = 28/259 (10%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L P V + AL +F + G + RV R+ +S G+ + F P A++A +
Sbjct: 15 LYVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRQSLGYGYVNFEDPKHAEQALEVL 74
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N + +P+ I + + P R + K +F+KNL ++++++EL F FG
Sbjct: 75 NYEPLMGRPIRIMWSQRDPSLR---------KSGKGNIFIKNLDKSIEQKELYDTFSFFG 125
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
I+ KIV DENG+SKG+GF+ F + AE+AI ++N +I+ +V K
Sbjct: 126 RILSCKIVMDENGQSKGYGFVHFEKEECAERAIEKINNMIIRDRVVYVG--------KFI 177
Query: 216 PKVKPPLLQPARK---NKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIG 267
PK + ARK N ++V N P +N + +E+F+ FG I S+ ++ D K G
Sbjct: 178 PKTE--RKSQARKVKFNNLYVKNFPPETDNEKLKEMFSEFGEIKSACVMKDNEGKSKGFG 235
Query: 268 FIEFIMPKHATHAVSTMNG 286
F+ ++ P HA +AV TM+G
Sbjct: 236 FVCYLDPDHAENAVRTMHG 254
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 80/277 (28%), Positives = 144/277 (51%), Gaps = 16/277 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S++ + L + F FG + ++ ++N +S+G+ + F A++A ++N
Sbjct: 103 IFIKNLDKSIEQKELYDTFSFFGRILSCKIVMDENGQSKGYGFVHFEKEECAERAIEKIN 162
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
+I + V + K ++S + ++ K + ++VKN D E+LK F +FG
Sbjct: 163 NMIIRDRVVYVGKFIPKTERKS-----QARKVKFNNLYVKNFPPETDNEKLKEMFSEFGE 217
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFP 216
I +++D GKSKGFGF+ + AE A+ M+G+ I+ + + A+ ++
Sbjct: 218 IKSACVMKDNEGKSKGFGFVCYLDPDHAENAVRTMHGKEIEGRVLYCARAQRKEERQEEL 277
Query: 217 KVKPPLLQPARKN------KIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KH 265
K K + R++ ++V NL NI++ EE F+ G+ITS+ ++ D K
Sbjct: 278 KQKIEKQRAERQSNYMLNVNLYVKNLDDNIDDKRLEEAFSVHGSITSAKVMKDANNRSKG 337
Query: 266 IGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ F P+ A AV+ MNG + SKPL V L+ K
Sbjct: 338 FGFVCFANPEQAARAVTDMNGTIIGSKPLYVALAQRK 374
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 99/190 (52%), Gaps = 8/190 (4%)
Query: 26 KENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTP 85
K + K N L+V N P DN+ L F +FG ++ V ++ +S+GF + + P
Sbjct: 183 KSQARKVKFNNLYVKNFPPETDNEKLKEMFSEFGEIKSACVMKDNEGKSKGFGFVCYLDP 242
Query: 86 AEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDK--------VFVKN 137
A+ A M+G I + + + K ++ + EKQ + + ++VKN
Sbjct: 243 DHAENAVRTMHGKEIEGRVLYCARAQRKEERQEELKQKIEKQRAERQSNYMLNVNLYVKN 302
Query: 138 LVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQ 197
L + +D++ L+ F G+I K+++D N +SKGFGF+ F + + A +A+ +MNG +I
Sbjct: 303 LDDNIDDKRLEEAFSVHGSITSAKVMKDANNRSKGFGFVCFANPEQAARAVTDMNGTIIG 362
Query: 198 HNSTFVSLAE 207
+V+LA+
Sbjct: 363 SKPLYVALAQ 372
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 71/123 (57%), Gaps = 1/123 (0%)
Query: 20 EGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAI 79
E R+ +++N + N L+V NL+ ++D++ L F G++ +V ++ N+ S+GF
Sbjct: 282 EKQRAERQSNYMLNVN-LYVKNLDDNIDDKRLEEAFSVHGSITSAKVMKDANNRSKGFGF 340
Query: 80 IVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLV 139
+ F P +A +A +MNG +IGSKP+ + + K +R+K + +++ + + V +++
Sbjct: 341 VCFANPEQAARAVTDMNGTIIGSKPLYVALAQRKEDRRAKLIEEHQQRLAQYRAPVASMI 400
Query: 140 ETV 142
V
Sbjct: 401 PAV 403
>gi|351695842|gb|EHA98760.1| Polyadenylate-binding protein 1 [Heterocephalus glaber]
Length = 709
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 94/304 (30%), Positives = 156/304 (51%), Gaps = 32/304 (10%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK + W + D R + N + + NL+ S+DN+AL + F FG +
Sbjct: 168 KGKPVRIMWSQ---RDPSLRKSGVGN-------IFIKNLDKSIDNKALYDTFSAFGNILS 217
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V ++N S+G+ + F T A++A +MNG L+ + V + + + +R +G
Sbjct: 218 CKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR-KEREAELGA 275
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
K++ V++KN E +D+E LK F KFG + VK++ DE+GKSKGFGF+ F ++
Sbjct: 276 RAKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 333
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A+KA+ EMNG+ + +V A+ K+ F ++K + + ++V NL
Sbjct: 334 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 393
Query: 239 NINNSEFEELFARFGTITSSSLVSDKHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTL 298
I++ + F+ FGTITS+ + AT AV+ MNG + +KPL V L
Sbjct: 394 GIDDERLRKEFSPFGTITSAKNSEE-------------ATKAVTEMNGRIVATKPLYVAL 440
Query: 299 SGTK 302
+ K
Sbjct: 441 AQRK 444
>gi|428183055|gb|EKX51914.1| hypothetical protein GUITHDRAFT_84932 [Guillardia theta CCMP2712]
Length = 616
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 85/282 (30%), Positives = 147/282 (52%), Gaps = 31/282 (10%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ +VD + L + F +FG + +V+ +++ SRGF + F T EA +A ++N
Sbjct: 114 IFIKNLDKTVDTRTLHDTFSQFGNILSCKVSMDEHANSRGFGFVQFETAEEANEAISKVN 173
Query: 97 GHLIGSKPVIIT-FVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
G L+ K + + F+ G+R G E+++ V+VKN + V +++ + F ++G
Sbjct: 174 GMLLEDKRLFVGPFIPR--GERESTNG--ERRFTN--VYVKNFPDNVSDDDFRKSFERYG 227
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPG---- 211
I KI+R E+G SK FGF+ F A+K EMNG+ F +I G
Sbjct: 228 EITSCKIMRKEDGTSKCFGFVNFKEADDAKKCCEEMNGQ-----KPFGGERDIYAGRAEK 282
Query: 212 --------KKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD 263
KK + +++ L+ + +++ NL I++ + + F +FGTITS+ ++ D
Sbjct: 283 ESERKEKLKKKYDQIRMERLKNNQLVNLYIKNLDDTIDDEKLRQTFEQFGTITSAKVMRD 342
Query: 264 KH-------IGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTL 298
K GF+ F P+ AT AV+ MNG + +KP+ V L
Sbjct: 343 KDRPEVSKGFGFVCFAQPEEATRAVTAMNGQMVGTKPIYVAL 384
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 75/258 (29%), Positives = 122/258 (47%), Gaps = 24/258 (9%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L+P+V L F G + +RV R+ S G+A + F+ +A++A +
Sbjct: 26 LYVGDLDPNVTEPQLFEVFSVVGPVASIRVCRDAMTRRSLGYAYVNFHNVVDAERALDTL 85
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N I K I + P R G +F+KNL +TVD L F +FG
Sbjct: 86 NYTQIKGKACRIMWKHRDPSIRKSGAG---------NIFIKNLDKTVDTRTLHDTFSQFG 136
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ DE+ S+GFGF+QF + + A +AI ++NG +++ FV
Sbjct: 137 NILSCKVSMDEHANSRGFGFVQFETAEEANEAISKVNGMLLEDKRLFVG--------PFI 188
Query: 216 PKVKPPLLQPARK-NKIFVANLPSNINNSEFEELFARFGTITSSSLV-----SDKHIGFI 269
P+ + R+ ++V N P N+++ +F + F R+G ITS ++ + K GF+
Sbjct: 189 PRGERESTNGERRFTNVYVKNFPDNVSDDDFRKSFERYGEITSCKIMRKEDGTSKCFGFV 248
Query: 270 EFIMPKHATHAVSTMNGH 287
F A MNG
Sbjct: 249 NFKEADDAKKCCEEMNGQ 266
>gi|255556766|ref|XP_002519416.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223541279|gb|EEF42830.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 632
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 95/311 (30%), Positives = 157/311 (50%), Gaps = 31/311 (9%)
Query: 5 GKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDV 64
GK++ W D AR N N ++V NL S+DN L F +FGT+
Sbjct: 81 GKLMRVMWSH---RDPDARRNGIGN-------VYVKNLSESIDNVGLQELFGEFGTVLSC 130
Query: 65 RVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIIT-FVELKPGQRSKPVGP 123
+VA ++ +S+G + F + A A ++NG ++G K + + FV ++S V P
Sbjct: 131 KVATFEDGKSKGHGFVQFESEDSANSAIEKLNGSIVGDKQIYVGKFV-----KKSDRVLP 185
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
K ++VKNL + EE L+ F +FG I+ V I RDE G S+GFGF+ F +
Sbjct: 186 SPDA-KYTNLYVKNLDPGITEELLQEKFSEFGKIVSVAIARDECGSSRGFGFVNFENPDD 244
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-------IVPGKKVFPKVKPPLLQPARKNKIFVANL 236
A A+ MNG + +V A+ I+ ++ F + + + + + ++V N+
Sbjct: 245 ARWAMERMNGTELGSKVLYVGRAQKRAEREQIL--RRQFEEKRKEQITKFKGSNVYVKNI 302
Query: 237 PSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKS 291
++ + E E F++ GTITS+ L+ D K GF+ F + A+ AV+T +G++F
Sbjct: 303 DDDVTDEELREHFSQCGTITSAKLMKDDKGRSKGFGFVCFSSSEEASKAVNTFHGYMFHR 362
Query: 292 KPLKVTLSGTK 302
KPL V ++ K
Sbjct: 363 KPLYVAIAQRK 373
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 81/267 (30%), Positives = 124/267 (46%), Gaps = 24/267 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKND-ESRGFAIIVFNTPAEAKKARVEM 95
L+V L V + L++ F +F TL VRV R+ + S + + F +P +A +A
Sbjct: 15 LYVGELHCDVSDGQLVDAFSEFNTLASVRVCRDSSTGRSLCYGYVNFISPEDAIRAIETK 74
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N + K + + + P R +G V+VKNL E++D L+ F +FG
Sbjct: 75 NHTPLNGKLMRVMWSHRDPDARRNGIG---------NVYVKNLSESIDNVGLQELFGEFG 125
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
++ K+ E+GKSKG GF+QF S +A AI ++NG ++ +V K
Sbjct: 126 TVLSCKVATFEDGKSKGHGFVQFESEDSANSAIEKLNGSIVGDKQIYVG--------KFV 177
Query: 216 PKVKPPLLQP-ARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFI 269
K L P A+ ++V NL I +E F+ FG I S ++ D + GF+
Sbjct: 178 KKSDRVLPSPDAKYTNLYVKNLDPGITEELLQEKFSEFGKIVSVAIARDECGSSRGFGFV 237
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKV 296
F P A A+ MNG SK L V
Sbjct: 238 NFENPDDARWAMERMNGTELGSKVLYV 264
>gi|340939192|gb|EGS19814.1| hypothetical protein CTHT_0042990 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 777
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 133/269 (49%), Gaps = 26/269 (9%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+PSV L F + G++ +RV R+ S G+A + +N+ A+ +KA E+
Sbjct: 70 LYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNSVADGEKALEEL 129
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI KP I + + P R G +F+KNL +D + L F FG
Sbjct: 130 NYTLIKGKPCRIMWSQRDPALRKTGHG---------NIFIKNLDAAIDNKALHDTFAAFG 180
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKV- 214
NI+ K+ DENG SKG+GF+ + + +AA +AI +NG ++ +V +P K
Sbjct: 181 NILSCKVATDENGNSKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGYH--IPKKDRQ 238
Query: 215 --FPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIG 267
F ++K A +++ N+ + EF E F+++G ITSS+L D + G
Sbjct: 239 SKFEEMK------ANYTNVYIKNINLEVTEEEFREFFSKWGEITSSTLARDAEGKPRGFG 292
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
F+ + A V MNG ++ + L V
Sbjct: 293 FVNYSTHASAAKCVEEMNGKEWRGQELYV 321
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 90/351 (25%), Positives = 152/351 (43%), Gaps = 65/351 (18%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK W + D R N + + NL+ ++DN+AL + F FG +
Sbjct: 135 KGKPCRIMWSQ---RDPALRKTGHGN-------IFIKNLDAAIDNKALHDTFAAFGNILS 184
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+VA ++N S+G+ + + T A +A +NG L+ K V + + K ++SK
Sbjct: 185 CKVATDENGNSKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGYHIPKKDRQSKF--- 241
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
EE + V++KN+ V EEE + F K+G I + RD GK +GFGF+ + ++ +
Sbjct: 242 EEMKANYTNVYIKNINLEVTEEEFREFFSKWGEITSSTLARDAEGKPRGFGFVNYSTHAS 301
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNK-----IFVANLPS 238
A K + EMNG+ + +V A+ ++ + + ++NK +++ NL
Sbjct: 302 AAKCVEEMNGKEWRGQELYVGRAQKKHEREEELRKSYEAARLEKQNKYQGVNLYIKNLSD 361
Query: 239 NINNSEFEELFARFGTITSSSLVSD----------------------------------- 263
+++ + +FA FG ITS+ ++ D
Sbjct: 362 EVDDEKLRAMFAEFGPITSAKVMRDTPPEPAKDEKNKENNKESEKEGEKKEGEGEGDKKP 421
Query: 264 ------------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
K GF+ F P AT AV+ MN + KPL V L+ K
Sbjct: 422 EVKKPERKLGKSKGFGFVCFANPDDATKAVAEMNQRMVDGKPLYVALAQRK 472
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 56/142 (39%), Gaps = 44/142 (30%)
Query: 20 EGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARN---------K 70
E AR K+N Y+ L++ NL VD++ L F +FG + +V R+ K
Sbjct: 339 EAARLEKQNK--YQGVNLYIKNLSDEVDDEKLRAMFAEFGPITSAKVMRDTPPEPAKDEK 396
Query: 71 NDE---------------------------------SRGFAIIVFNTPAEAKKARVEMNG 97
N E S+GF + F P +A KA EMN
Sbjct: 397 NKENNKESEKEGEKKEGEGEGDKKPEVKKPERKLGKSKGFGFVCFANPDDATKAVAEMNQ 456
Query: 98 HLIGSKPVIITFVELKPGQRSK 119
++ KP+ + + K ++S+
Sbjct: 457 RMVDGKPLYVALAQRKEVRKSQ 478
>gi|354499752|ref|XP_003511970.1| PREDICTED: polyadenylate-binding protein 5-like [Cricetulus
griseus]
gi|344240775|gb|EGV96878.1| Polyadenylate-binding protein 5 [Cricetulus griseus]
Length = 382
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 85/281 (30%), Positives = 157/281 (55%), Gaps = 24/281 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + +L+ S+DN+ L F FG + +V + N S+G+A + F++ A A +A MN
Sbjct: 108 IFIKHLDKSIDNRTLFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMN 166
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G + ++ V + + P +R+ V ++ + VFVKNL + +D+E+LK F ++G
Sbjct: 167 GVWLNNRQVYVGRFKF-PEERAAEVRTRDRATFTN-VFVKNLGDNMDDEKLKELFSEYGP 224
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPG 211
VK++RD +GKSKGFGF+++ +++AA+K++++++G+ I +V A+ +
Sbjct: 225 TESVKVIRDASGKSKGFGFVRYETHEAAQKSVLDLHGKTIDGKVLYVGRAQKKIERLAEL 284
Query: 212 KKVFPKVK------PPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-- 263
++ F ++K PP + I++ NL I++ + +E F+ FG+I+ + ++ +
Sbjct: 285 RRRFERLKLKEKSRPPGVP------IYIKNLDETIDDEKLKEEFSSFGSISRAKVMMEMG 338
Query: 264 --KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
K + F + AT AV MNG V SKPL VTL +
Sbjct: 339 QGKGFAVVCFSSFEEATKAVDEMNGPVLGSKPLSVTLGQAR 379
Score = 110 bits (275), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 79/267 (29%), Positives = 128/267 (47%), Gaps = 26/267 (9%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDES-RGFAIIVFNTPAEAKKARVEMNG 97
V +L P V L +F+ G LR R+ R+ S G+ + F PA+A+ A MN
Sbjct: 22 VGDLGPEVTEDMLYKKFRPAGPLRFTRICRDPVTHSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 98 HLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNI 157
LI KP + + + R VG +F+K+L +++D L F FGNI
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVG---------NIFIKHLDKSIDNRTLFYLFSAFGNI 132
Query: 158 IEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPK 217
+ K+V D+NG SKG+ ++ F S AA +AI MNG + + +V G+ FP+
Sbjct: 133 LSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVWLNNRQVYV-------GRFKFPE 184
Query: 218 VKPPLLQP---ARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFI 269
+ ++ A +FV NL N+++ + +ELF+ +G S ++ D K GF+
Sbjct: 185 ERAAEVRTRDRATFTNVFVKNLGDNMDDEKLKELFSEYGPTESVKVIRDASGKSKGFGFV 244
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKV 296
+ + A +V ++G K L V
Sbjct: 245 RYETHEAAQKSVLDLHGKTIDGKVLYV 271
>gi|297802580|ref|XP_002869174.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297315010|gb|EFH45433.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 625
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 83/276 (30%), Positives = 152/276 (55%), Gaps = 15/276 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S+D++AL + F FG + +VA + + +S+G+ + + A+KA ++N
Sbjct: 126 IFIKNLDESIDHKALHDTFSVFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLN 185
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G L+ K V + P R + + K V+VKNL E+ +++LK+ F ++G
Sbjct: 186 GMLLNDKQVYV-----GPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGK 240
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFP 216
I +++D +GKSKGFGF+ F + A +A+ +NG +V A+ ++
Sbjct: 241 ITSAVVMKDGDGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETEL 300
Query: 217 KVK--PPLLQPARK---NKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHI 266
+V+ L + A K + ++V NL +I++ + +E+F+ FGT+TS ++ D K
Sbjct: 301 RVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSCKVMRDPNGTSKGS 360
Query: 267 GFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ F P+ AT A+S ++G + +SKPL V ++ K
Sbjct: 361 GFVAFSTPEEATEAMSQLSGKMIESKPLYVAIAQRK 396
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 74/267 (27%), Positives = 131/267 (49%), Gaps = 22/267 (8%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKK 90
+ L+V +L+ +V + L + F + G + VRV R+ S G+ + F P +A +
Sbjct: 33 FGTTSLYVGDLDVNVTDSQLFDAFSQMGPVVSVRVCRDLATRRSLGYGYVNFTNPQDAAR 92
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A E+N + KP+ + + P R G +F+KNL E++D + L
Sbjct: 93 AIQELNYIPLYGKPIRVMYSHRDPSVRRSGAG---------NIFIKNLDESIDHKALHDT 143
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVP 210
F FGNI+ K+ D +G+SKG+GF+Q+ + ++A+KAI ++NG ++ +V
Sbjct: 144 FSVFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYV------- 196
Query: 211 GKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KH 265
G + + + + ++V NL + + + + F +G ITS+ ++ D K
Sbjct: 197 GPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGDGKSKG 256
Query: 266 IGFIEFIMPKHATHAVSTMNGHVFKSK 292
GF+ F A AV ++NGH F K
Sbjct: 257 FGFVNFENADDAARAVESLNGHKFDDK 283
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 106/199 (53%), Gaps = 10/199 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
++V NL S + L N F ++G + V ++ + +S+GF + F +A +A +N
Sbjct: 217 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGDGKSKGFGFVNFENADDAARAVESLN 276
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQ--------YKKDKVFVKNLVETVDEEELK 148
GH K + + K +R + +Q ++ ++VKNL ++ +E+LK
Sbjct: 277 GHKFDDKEWYVGRAQ-KKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLK 335
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEI 208
F FG + K++RD NG SKG GF+ F + + A +A+ +++G+MI+ +V++A+
Sbjct: 336 EIFSPFGTVTSCKVMRDPNGTSKGSGFVAFSTPEEATEAMSQLSGKMIESKPLYVAIAQR 395
Query: 209 VPGKKV-FPKVKPPLLQPA 226
++ F +V+P +QP+
Sbjct: 396 KEDRRAQFSQVRPVAMQPS 414
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 56/94 (59%)
Query: 26 KENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTP 85
KE ++ + L+V NL+PS+ ++ L F FGT+ +V R+ N S+G + F+TP
Sbjct: 309 KEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSCKVMRDPNGTSKGSGFVAFSTP 368
Query: 86 AEAKKARVEMNGHLIGSKPVIITFVELKPGQRSK 119
EA +A +++G +I SKP+ + + K +R++
Sbjct: 369 EEATEAMSQLSGKMIESKPLYVAIAQRKEDRRAQ 402
>gi|396492663|ref|XP_003843853.1| hypothetical protein LEMA_P015040.1 [Leptosphaeria maculans JN3]
gi|312220433|emb|CBY00374.1| hypothetical protein LEMA_P015040.1 [Leptosphaeria maculans JN3]
Length = 747
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 84/266 (31%), Positives = 133/266 (50%), Gaps = 20/266 (7%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+PSV L F G + +RV R+ S G+A + +N+ + +KA E+
Sbjct: 49 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKALEEL 108
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N +I KP I + + P R G VF+KNL +D + L F FG
Sbjct: 109 NYTVIKGKPCRIMWSQRDPALRKTGQG---------NVFIKNLDHAIDNKALHDTFAAFG 159
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ +DE+G SKG+GF+ + + +AA AI +NG ++ FV +P K+
Sbjct: 160 NILSCKVAQDEHGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFV--GHHIPKKERM 217
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIE 270
K + A I+V N+ ++ + EF +LF + G ITS+S+ D + GF+
Sbjct: 218 SKFEE---MKANFTNIYVKNIDLDVTDDEFRDLFEKHGDITSASIARDDQGKSRGFGFVN 274
Query: 271 FIMPKHATHAVSTMNGHVFKSKPLKV 296
+I + A+ AV T+N F + L V
Sbjct: 275 YIKHEAASVAVETLNDTEFHGQKLYV 300
Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 70/265 (26%), Positives = 131/265 (49%), Gaps = 18/265 (6%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK W + D R + N + + NL+ ++DN+AL + F FG +
Sbjct: 114 KGKPCRIMWSQ---RDPALRKTGQGN-------VFIKNLDHAIDNKALHDTFAAFGNILS 163
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+VA++++ S+G+ + + T A A +NG L+ K V + K + SK
Sbjct: 164 CKVAQDEHGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKERMSKF--- 220
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
EE + ++VKN+ V ++E + F K G+I I RD+ GKS+GFGF+ + ++A
Sbjct: 221 EEMKANFTNIYVKNIDLDVTDDEFRDLFEKHGDITSASIARDDQGKSRGFGFVNYIKHEA 280
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAEIVPGK--KVFPKVKPPLLQPARKNK---IFVANLPS 238
A A+ +N +V A+ + ++ + + L+ K + +++ NL
Sbjct: 281 ASVAVETLNDTEFHGQKLYVGRAQKKHEREEELRKQYEAARLEKQSKYQGVNLYIKNLND 340
Query: 239 NINNSEFEELFARFGTITSSSLVSD 263
++++ + ++F FGTITS+ ++ D
Sbjct: 341 DVDDEKLRDMFTPFGTITSAKVMRD 365
Score = 45.1 bits (105), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 38/65 (58%)
Query: 143 DEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTF 202
D + K K G+ + +K + GKSKGFGF+ F + A KA+ EMN +M++ +
Sbjct: 399 DSTDDKKEDTKAGDKVTIKGEKKILGKSKGFGFVCFSNPDEATKAVTEMNQKMLEGKPLY 458
Query: 203 VSLAE 207
V+LA+
Sbjct: 459 VALAQ 463
Score = 37.7 bits (86), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 74 SRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELK 113
S+GF + F+ P EA KA EMN ++ KP+ + + K
Sbjct: 426 SKGFGFVCFSNPDEATKAVTEMNQKMLEGKPLYVALAQRK 465
>gi|168018573|ref|XP_001761820.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686875|gb|EDQ73261.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 439
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 87/280 (31%), Positives = 143/280 (51%), Gaps = 23/280 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S+DN+AL + F FG + +VA + + +S+G+ + F A+ A ++N
Sbjct: 114 IFIKNLDKSIDNKALHDTFAAFGNILSCKVATDASGQSKGYGFVQFEQEESAQNAIEKVN 173
Query: 97 GHLIGSKPVIIT-FVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
G L+ K V + FV + ++ V K + V+VKNL + ++ELK F +G
Sbjct: 174 GMLLNDKQVFVGPFVRRQERDQAGGVS------KFNNVYVKNLADVTTDDELKKVFGAWG 227
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
I ++RD +GKSK FGF+ F A KA+ + G+ +V A+ ++
Sbjct: 228 PISSAVVMRDNDGKSKCFGFVNFEHPDDAAKAVEALQGKKFDEKEWYVGRAQKKSEREAE 287
Query: 216 PKVKPPLLQPARKNKI--------FVANLPSNINNSEFEELFARFGTITSSSLVSD---- 263
+ K + RK +I ++ NL +++ + ELFA +GTITS ++ D
Sbjct: 288 LRAK---FEQERKERIEKYQGVNLYLKNLDDTVDDEKIRELFAEYGTITSCKVMRDHQGQ 344
Query: 264 -KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
K GF+ F P AT AV+ MNG + +KPL V L+ K
Sbjct: 345 SKGSGFVAFSSPDEATRAVTEMNGKMVGNKPLYVALAQRK 384
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 76/266 (28%), Positives = 128/266 (48%), Gaps = 22/266 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +LEP+V L F + G + +RV R+ S G++ + +N +A +A +
Sbjct: 26 LYVGDLEPNVSEAQLYEMFSQVGQVVSIRVCRDLITRRSLGYSYVNYNNAQDATRALELL 85
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N + KP+ I F P R +F+KNL +++D + L F FG
Sbjct: 86 NFTGVNGKPIRIMFSHRDPSIRKSGTA---------NIFIKNLDKSIDNKALHDTFAAFG 136
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ D +G+SKG+GF+QF ++A+ AI ++NG ++ FV G V
Sbjct: 137 NILSCKVATDASGQSKGYGFVQFEQEESAQNAIEKVNGMLLNDKQVFV-------GPFVR 189
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIE 270
+ + ++ N ++V NL + E +++F +G I+S+ ++ D K GF+
Sbjct: 190 RQERDQAGGVSKFNNVYVKNLADVTTDDELKKVFGAWGPISSAVVMRDNDGKSKCFGFVN 249
Query: 271 FIMPKHATHAVSTMNGHVFKSKPLKV 296
F P A AV + G F K V
Sbjct: 250 FEHPDDAAKAVEALQGKKFDEKEWYV 275
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 98/185 (52%), Gaps = 9/185 (4%)
Query: 31 VYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKK 90
V K N ++V NL + L F +G + V R+ + +S+ F + F P +A K
Sbjct: 199 VSKFNNVYVKNLADVTTDDELKKVFGAWGPISSAVVMRDNDGKSKCFGFVNFEHPDDAAK 258
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKV--------FVKNLVETV 142
A + G K + + K +R + + +Q +K+++ ++KNL +TV
Sbjct: 259 AVEALQGKKFDEKEWYVGRAQ-KKSEREAELRAKFEQERKERIEKYQGVNLYLKNLDDTV 317
Query: 143 DEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTF 202
D+E+++ F ++G I K++RD G+SKG GF+ F S A +A+ EMNG+M+ + +
Sbjct: 318 DDEKIRELFAEYGTITSCKVMRDHQGQSKGSGFVAFSSPDEATRAVTEMNGKMVGNKPLY 377
Query: 203 VSLAE 207
V+LA+
Sbjct: 378 VALAQ 382
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 57/94 (60%)
Query: 26 KENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTP 85
KE + Y+ L++ NL+ +VD++ + F ++GT+ +V R+ +S+G + F++P
Sbjct: 297 KERIEKYQGVNLYLKNLDDTVDDEKIRELFAEYGTITSCKVMRDHQGQSKGSGFVAFSSP 356
Query: 86 AEAKKARVEMNGHLIGSKPVIITFVELKPGQRSK 119
EA +A EMNG ++G+KP+ + + K +R +
Sbjct: 357 DEATRAVTEMNGKMVGNKPLYVALAQRKEERRMR 390
>gi|451854943|gb|EMD68235.1| hypothetical protein COCSADRAFT_270468 [Cochliobolus sativus
ND90Pr]
Length = 749
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 84/266 (31%), Positives = 133/266 (50%), Gaps = 20/266 (7%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+PSV L F G + +RV R+ S G+A + +N+ + +KA E+
Sbjct: 50 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKALEEL 109
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N +I KP I + + P R G VF+KNL +D + L F FG
Sbjct: 110 NYTVIKGKPCRIMWSQRDPALRKTGQG---------NVFIKNLDHAIDNKALHDTFAAFG 160
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ +DE G SKG+GF+ + + +AA AI +NG ++ FV +P K+
Sbjct: 161 NILSCKVAQDELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFV--GHHIPKKERM 218
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKH-----IGFIE 270
K + A I+V N+ ++++ EF ELF + G ITS+S+ D+ GF+
Sbjct: 219 SKFEE---MKANFTNIYVKNIDLDVSDEEFRELFEKHGDITSASIARDEQGKSRGFGFVN 275
Query: 271 FIMPKHATHAVSTMNGHVFKSKPLKV 296
+I + A+ AV +N F+ + L V
Sbjct: 276 YIKHEAASAAVDALNDTDFRGQKLYV 301
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 72/265 (27%), Positives = 131/265 (49%), Gaps = 18/265 (6%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK W + D R + N + + NL+ ++DN+AL + F FG +
Sbjct: 115 KGKPCRIMWSQ---RDPALRKTGQGN-------VFIKNLDHAIDNKALHDTFAAFGNILS 164
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+VA+++ S+G+ + + T A A +NG L+ K V + K + SK
Sbjct: 165 CKVAQDELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKERMSKF--- 221
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
EE + ++VKN+ V +EE + F K G+I I RDE GKS+GFGF+ + ++A
Sbjct: 222 EEMKANFTNIYVKNIDLDVSDEEFRELFEKHGDITSASIARDEQGKSRGFGFVNYIKHEA 281
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAEIVPGK--KVFPKVKPPLLQPARKNK---IFVANLPS 238
A A+ +N + +V A+ + ++ + + L+ K + +++ NL
Sbjct: 282 ASAAVDALNDTDFRGQKLYVGRAQKKHEREEELRKQYEAARLEKQSKYQGVNLYIKNLND 341
Query: 239 NINNSEFEELFARFGTITSSSLVSD 263
++++ + ++F FGTITS+ ++ D
Sbjct: 342 DVDDEKLRDMFTPFGTITSAKVMRD 366
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 57/231 (24%), Positives = 98/231 (42%), Gaps = 61/231 (26%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
++V N++ V ++ F+K G + +AR++ +SRGF + + A A +N
Sbjct: 231 IYVKNIDLDVSDEEFRELFEKHGDITSASIARDEQGKSRGFGFVNYIKHEAASAAVDALN 290
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPE------EKQ--YKKDKVFVKNLVETVDEEELK 148
+ + + + K +R + + + EKQ Y+ +++KNL + VD+E+L+
Sbjct: 291 DTDFRGQKLYVGRAQ-KKHEREEELRKQYEAARLEKQSKYQGVNLYIKNLNDDVDDEKLR 349
Query: 149 SHFIKFGNIIEVKIVRD-------------------------------------EN---- 167
F FG I K++RD EN
Sbjct: 350 DMFTPFGTITSAKVMRDAMPAERSETPGDEKKEEAKEESEKTEESNEGADDKKDENKPGE 409
Query: 168 -----------GKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
GKSKGFGF+ F + A KA+ EMN +MI+ +V+LA+
Sbjct: 410 KVTIKGEKKILGKSKGFGFVCFSNPDEATKAVTEMNQKMIEGKPLYVALAQ 460
Score = 42.0 bits (97), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 54/146 (36%), Gaps = 54/146 (36%)
Query: 20 EGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARN---------- 69
E AR K++ Y+ L++ NL VD++ L + F FGT+ +V R+
Sbjct: 319 EAARLEKQSK--YQGVNLYIKNLNDDVDDEKLRDMFTPFGTITSAKVMRDAMPAERSETP 376
Query: 70 ------------------------KNDE------------------SRGFAIIVFNTPAE 87
K DE S+GF + F+ P E
Sbjct: 377 GDEKKEEAKEESEKTEESNEGADDKKDENKPGEKVTIKGEKKILGKSKGFGFVCFSNPDE 436
Query: 88 AKKARVEMNGHLIGSKPVIITFVELK 113
A KA EMN +I KP+ + + K
Sbjct: 437 ATKAVTEMNQKMIEGKPLYVALAQRK 462
>gi|391332716|ref|XP_003740776.1| PREDICTED: polyadenylate-binding protein 1-like [Metaseiulus
occidentalis]
Length = 660
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 87/277 (31%), Positives = 147/277 (53%), Gaps = 17/277 (6%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL +DN+A+ + F FG + RVA ++ SRG+ + F T A +A ++NG
Sbjct: 103 IKNLHKDIDNKAIFDTFSAFGNILSCRVATDEQGNSRGYGFVHFETEEAANEAINKVNGM 162
Query: 99 LIGSKPVIIT-FVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNI 157
L+ K V + FV +R + +G + + + V+VKN E +D+ +LK F +G I
Sbjct: 163 LLNEKKVFVGKFVPRS--ERERMMGDKARLFTN--VYVKNFGEELDDGKLKEMFEVYGKI 218
Query: 158 IEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHN-STFVSLAE-----IVPG 211
+++ D+ GKS+GFGF+ F + AE+A+ E+N + + + +V A+ +
Sbjct: 219 TSARVMTDQTGKSRGFGFVSFENPDNAEQAVKELNDKELGNGKKIYVGRAQKKAERLSDL 278
Query: 212 KKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KH 265
K+ F ++K + + ++V NL I++ FA +GTITS+ ++ D K
Sbjct: 279 KRKFEQLKMERMTRYQGVNLYVKNLDDVIDDERLRREFAPYGTITSAKVMMDSTGARSKG 338
Query: 266 IGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ F P+ AT AV+ MNG + KPL V L+ K
Sbjct: 339 FGFVCFSSPEEATKAVTEMNGRIIVQKPLYVALAQRK 375
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 73/263 (27%), Positives = 133/263 (50%), Gaps = 26/263 (9%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L+P V L +F + G + +RV R+ + S G+A + F+ P +A++
Sbjct: 8 YTMASLYVGDLDPDVTESMLFEKFCQAGPVLSIRVCRDMISRRSLGYAYVNFHQPGDAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN + ++P+ I + + P R VG VF+KNL + +D + +
Sbjct: 68 ALDTMNFEPLKNRPMRIMWSQRDPSLRKSGVG---------NVFIKNLHKDIDNKAIFDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVP 210
F FGNI+ ++ DE G S+G+GF+ F + +AA +AI ++NG ++ FV
Sbjct: 119 FSAFGNILSCRVATDEQGNSRGYGFVHFETEEAANEAINKVNGMLLNEKKVFVG------ 172
Query: 211 GKKVFPKVKPPLLQPARK---NKIFVANLPSNINNSEFEELFARFGTITSSSLVSD---- 263
K P+ + + + ++V N +++ + +E+F +G ITS+ +++D
Sbjct: 173 --KFVPRSERERMMGDKARLFTNVYVKNFGEELDDGKLKEMFEVYGKITSARVMTDQTGK 230
Query: 264 -KHIGFIEFIMPKHATHAVSTMN 285
+ GF+ F P +A AV +N
Sbjct: 231 SRGFGFVSFENPDNAEQAVKELN 253
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 96/180 (53%), Gaps = 9/180 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
++V N +D+ L F+ +G + RV ++ +SRGF + F P A++A E+N
Sbjct: 194 VYVKNFGEELDDGKLKEMFEVYGKITSARVMTDQTGKSRGFGFVSFENPDNAEQAVKELN 253
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDK--------VFVKNLVETVDEEELK 148
+G+ I K +R + + +Q K ++ ++VKNL + +D+E L+
Sbjct: 254 DKELGNGKKIYVGRAQKKAERLSDLKRKFEQLKMERMTRYQGVNLYVKNLDDVIDDERLR 313
Query: 149 SHFIKFGNIIEVKIVRDENG-KSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
F +G I K++ D G +SKGFGF+ F S + A KA+ EMNGR+I +V+LA+
Sbjct: 314 REFAPYGTITSAKVMMDSTGARSKGFGFVCFSSPEEATKAVTEMNGRIIVQKPLYVALAQ 373
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 50/88 (56%), Gaps = 1/88 (1%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKND-ESRGFAIIVFNTPAEAKK 90
Y+ L+V NL+ +D++ L EF +GT+ +V + S+GF + F++P EA K
Sbjct: 293 YQGVNLYVKNLDDVIDDERLRREFAPYGTITSAKVMMDSTGARSKGFGFVCFSSPEEATK 352
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRS 118
A EMNG +I KP+ + + K +R+
Sbjct: 353 AVTEMNGRIIVQKPLYVALAQRKEDRRA 380
>gi|358372137|dbj|GAA88742.1| polyadenylate-binding protein [Aspergillus kawachii IFO 4308]
Length = 763
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 84/268 (31%), Positives = 132/268 (49%), Gaps = 24/268 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+PSV L F G + +RV R+ S G+A + +N A+ ++A ++
Sbjct: 54 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 113
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI KP I + + P R G VF+KNL +D + L F FG
Sbjct: 114 NYTLIKGKPCRIMWSQRDPALRKTGQG---------NVFIKNLDSAIDNKALHDTFAAFG 164
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ +DE G SKG+GF+ + + +AA AI +NG ++ FV G +
Sbjct: 165 NILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFV-------GHHIS 217
Query: 216 PKVKPPLLQPARKN--KIFVANLPSNINNSEFEELFARFGTITSSSLVSDKH-----IGF 268
K + + + N +++ NL S I++ EF ++F +FG ITS++L D+ GF
Sbjct: 218 KKDRQSKFEEMKANFTNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQEGKSRGFGF 277
Query: 269 IEFIMPKHATHAVSTMNGHVFKSKPLKV 296
+ F + A AV MN +S+ L V
Sbjct: 278 VNFSTHESAQAAVEEMNDKEIRSQKLYV 305
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 78/268 (29%), Positives = 141/268 (52%), Gaps = 18/268 (6%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK W + D R + N + + NL+ ++DN+AL + F FG +
Sbjct: 119 KGKPCRIMWSQ---RDPALRKTGQGN-------VFIKNLDSAIDNKALHDTFAAFGNILS 168
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+VA+++ S+G+ + + T A A +NG L+ K V + K ++SK
Sbjct: 169 CKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKF--- 225
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
EE + V++KNL +D++E + F KFG I + RD+ GKS+GFGF+ F ++++
Sbjct: 226 EEMKANFTNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHES 285
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAEIVPGK--KVFPKVKPPLLQPARKNK---IFVANLPS 238
A+ A+ EMN + I+ +V A+ + ++ + + L+ A K + ++V NL
Sbjct: 286 AQAAVEEMNDKEIRSQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTD 345
Query: 239 NINNSEFEELFARFGTITSSSLVSDKHI 266
+I++ + ELF +GTITS+ ++ D ++
Sbjct: 346 DIDDEKLRELFGPYGTITSAKVMRDTNV 373
Score = 45.4 bits (106), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 27/40 (67%)
Query: 168 GKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
GKSKGFGF+ F S A KA+ EMN RM+ +V+LA+
Sbjct: 431 GKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQ 470
Score = 41.6 bits (96), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 28/46 (60%)
Query: 74 SRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSK 119
S+GF + F++P EA KA EMN ++ KP+ + + K +RS+
Sbjct: 433 SKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQ 478
>gi|444732647|gb|ELW72929.1| Polyadenylate-binding protein 5 [Tupaia chinensis]
Length = 382
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 88/282 (31%), Positives = 154/282 (54%), Gaps = 32/282 (11%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S+DN+AL F FG + +V + N S+G+A + F++ A A +A MN
Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMN 166
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G + ++ V + + P +R+ V ++ + VFVKN + +D+E+LK F ++G
Sbjct: 167 GVRLNNRQVYVGRFKF-PEERAAEVRTRDRATFTN-VFVKNFGDDMDDEKLKELFSEYGP 224
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF- 215
VK++RD GKSKGFGF+++ +++AA+KA+++++G+ + +V A+ KK+
Sbjct: 225 TESVKVIRDAGGKSKGFGFVRYETHEAAQKAVLDLHGKSMDGKVLYVGRAQ----KKIER 280
Query: 216 --------------PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLV 261
K +PP + I++ NL I++ + +E F+ FG+I+ + ++
Sbjct: 281 LAELRRRFERLRLKEKSRPPGVP------IYIKNLDETIDDEKLKEEFSSFGSISRAKVM 334
Query: 262 SD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299
+ K G + F + AT AV MNG V SKPL VTL
Sbjct: 335 MEVGQGKGFGVVCFSSFEEATKAVDEMNGRVVGSKPLHVTLG 376
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 79/267 (29%), Positives = 128/267 (47%), Gaps = 26/267 (9%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDES-RGFAIIVFNTPAEAKKARVEMNG 97
V +L+P V L +F+ G LR R+ R+ S G+ + F PA+A+ A MN
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 98 HLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNI 157
LI KP + + + R VG +F+KNL +++D L F FGNI
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVG---------NIFIKNLDKSIDNRALFYLFSAFGNI 132
Query: 158 IEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPK 217
+ K+V D+NG SKG+ ++ F S AA +AI MNG + + +V G+ FP+
Sbjct: 133 LSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYV-------GRFKFPE 184
Query: 218 VKPPLLQP---ARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFI 269
+ ++ A +FV N ++++ + +ELF+ +G S ++ D K GF+
Sbjct: 185 ERAAEVRTRDRATFTNVFVKNFGDDMDDEKLKELFSEYGPTESVKVIRDAGGKSKGFGFV 244
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKV 296
+ + A AV ++G K L V
Sbjct: 245 RYETHEAAQKAVLDLHGKSMDGKVLYV 271
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 98/178 (55%), Gaps = 8/178 (4%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ V N +D++ L F ++G V+V R+ +S+GF + + T A+KA ++++
Sbjct: 201 VFVKNFGDDMDDEKLKELFSEYGPTESVKVIRDAGGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDK-------VFVKNLVETVDEEELKS 149
G + K + + + K + ++ E+ K+K +++KNL ET+D+E+LK
Sbjct: 261 GKSMDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETIDDEKLKE 320
Query: 150 HFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
F FG+I K++ E G+ KGFG + F S++ A KA+ EMNGR++ V+L +
Sbjct: 321 EFSSFGSISRAKVMM-EVGQGKGFGVVCFSSFEEATKAVDEMNGRVVGSKPLHVTLGQ 377
>gi|115477976|ref|NP_001062583.1| Os09g0115400 [Oryza sativa Japonica Group]
gi|46389987|dbj|BAD16229.1| putative poly(A)-binding protein [Oryza sativa Japonica Group]
gi|113630816|dbj|BAF24497.1| Os09g0115400 [Oryza sativa Japonica Group]
gi|125562753|gb|EAZ08133.1| hypothetical protein OsI_30396 [Oryza sativa Indica Group]
gi|125604734|gb|EAZ43770.1| hypothetical protein OsJ_28392 [Oryza sativa Japonica Group]
gi|169244485|gb|ACA50516.1| poly(A)-binding protein [Oryza sativa Japonica Group]
gi|215695451|dbj|BAG90618.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 662
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 82/273 (30%), Positives = 135/273 (49%), Gaps = 34/273 (12%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDE-SRGFAIIVFNTPAEAKK 90
+ L+V +L+ SV + L + F + G + VRV R+ N S G+A + +++PA+A +
Sbjct: 37 FPATSLYVGDLDVSVQDAQLFDVFAQVGGVVSVRVCRDVNTRRSLGYAYVNYSSPADAAR 96
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A +N I KP+ I + P R +F+KNL +++D + L
Sbjct: 97 ALEMLNFTPINGKPIRIMYSNRDPSLRKSGTA---------NIFIKNLDKSIDNKALYDT 147
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+ D +G+SKG+GF+Q+ +AA+ AI ++NG ++ +V
Sbjct: 148 FCVFGNILSCKVATDASGESKGYGFVQYERDEAAQAAIDKLNGMLMNDKKVYVGPFIRKQ 207
Query: 206 -AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD- 263
+ PG+ F N ++V NL N + +E+F +FGTITS+ ++ +
Sbjct: 208 ERDNSPGQVKF-------------NNVYVKNLSENTTEDDLKEIFGKFGTITSAVVMREG 254
Query: 264 ----KHIGFIEFIMPKHATHAVSTMNGHVFKSK 292
K GF+ F P A AV +NG F K
Sbjct: 255 DGRSKCFGFVNFESPDDAAQAVQELNGKKFDDK 287
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 85/276 (30%), Positives = 144/276 (52%), Gaps = 15/276 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S+DN+AL + F FG + +VA + + ES+G+ + + A+ A ++N
Sbjct: 130 IFIKNLDKSIDNKALYDTFCVFGNILSCKVATDASGESKGYGFVQYERDEAAQAAIDKLN 189
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G L+ K V + K + + P Q K + V+VKNL E E++LK F KFG
Sbjct: 190 GMLMNDKKVYVGPFIRKQERDNSP-----GQVKFNNVYVKNLSENTTEDDLKEIFGKFGT 244
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEI-----VPG 211
I ++R+ +G+SK FGF+ F S A +A+ E+NG+ +V A+ +
Sbjct: 245 ITSAVVMREGDGRSKCFGFVNFESPDDAAQAVQELNGKKFDDKEWYVGRAQKKSEREMEL 304
Query: 212 KKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHI 266
K+ F K + +++ NL ++++ + ELFA +GTITS ++ D +
Sbjct: 305 KEKFEKNLQEAADKYQNTNLYLKNLDDSVDDDKLRELFAEYGTITSCKVMRDSNGVSRGS 364
Query: 267 GFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ F + A+ A++ MN + SKPL V L+ K
Sbjct: 365 GFVAFKSAEDASRALAEMNSKMVGSKPLYVALAQRK 400
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 69/256 (26%), Positives = 125/256 (48%), Gaps = 21/256 (8%)
Query: 33 KENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKAR 92
K N ++V NL + L F KFGT+ V R + S+ F + F +P +A +A
Sbjct: 217 KFNNVYVKNLSENTTEDDLKEIFGKFGTITSAVVMREGDGRSKCFGFVNFESPDDAAQAV 276
Query: 93 VEMNGHLIGSKPVIITFVELKPGQR-------SKPVGPEEKQYKKDKVFVKNLVETVDEE 145
E+NG K + + K + K + +Y+ +++KNL ++VD++
Sbjct: 277 QELNGKKFDDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDSVDDD 336
Query: 146 ELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL 205
+L+ F ++G I K++RD NG S+G GF+ F S + A +A+ EMN +M+ +V+L
Sbjct: 337 KLRELFAEYGTITSCKVMRDSNGVSRGSGFVAFKSAEDASRALAEMNSKMVGSKPLYVAL 396
Query: 206 AEIVPGKKV-----FPKVKPPLLQPA--RKNKIFVANLPSNINNSEFEELFARFGTITSS 258
A+ +K F +++P L P+ + +F +P ++LF +G +
Sbjct: 397 AQRKEDRKARLQAQFSQLRPVPLAPSVGPRMPMFPPGVP-----GVGQQLF--YGQPPPA 449
Query: 259 SLVSDKHIGFIEFIMP 274
+ + GF + +MP
Sbjct: 450 FINTQPGFGFQQPLMP 465
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 51/88 (57%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L++ NL+ SVD+ L F ++GT+ +V R+ N SRG + F + +A +A
Sbjct: 319 YQNTNLYLKNLDDSVDDDKLRELFAEYGTITSCKVMRDSNGVSRGSGFVAFKSAEDASRA 378
Query: 92 RVEMNGHLIGSKPVIITFVELKPGQRSK 119
EMN ++GSKP+ + + K ++++
Sbjct: 379 LAEMNSKMVGSKPLYVALAQRKEDRKAR 406
>gi|168053933|ref|XP_001779388.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669186|gb|EDQ55778.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 650
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 89/280 (31%), Positives = 145/280 (51%), Gaps = 23/280 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ ++DN+AL + F FG + +VA + + +S+G+ + F A A ++N
Sbjct: 118 IFIKNLDKTIDNKALHDTFSAFGGILSCKVAVDGSGQSKGYGFVQFEQEESALTAIEKVN 177
Query: 97 GHLIGSKPVII-TFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
G L+ K V + FV + +S V K + V+VKNL E E++LK+ F +G
Sbjct: 178 GMLLNDKQVFVGPFVRRQERDQSGGVS------KFNNVYVKNLGENTTEDDLKNVFGAYG 231
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
I ++RD +GKSK FGF+ F A KA+ +NG+ +V A+ ++
Sbjct: 232 TISSAVVMRDSDGKSKCFGFVNFEHPDNAAKAVEALNGKKRDEKEWYVGRAQKKSEREAE 291
Query: 216 PKVKPPLLQPARKNKI--------FVANLPSNINNSEFEELFARFGTITSSSLVSD---- 263
+ K + RK +I ++ NL +++ + ELFA +GTITS ++ D
Sbjct: 292 LRAK---FEQERKERIEKYQGVNLYLKNLDDTVDDEKLRELFADYGTITSCKVMRDPQGQ 348
Query: 264 -KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
+ GF+ F P+ AT AV+ MNG + SKPL V L+ K
Sbjct: 349 SRGSGFVAFSSPEEATRAVTEMNGKMVGSKPLYVALAQRK 388
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 75/256 (29%), Positives = 126/256 (49%), Gaps = 22/256 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +LEP+V L F + G + +RV R+ S G+A + +N+ +A +A +
Sbjct: 30 LYVGDLEPNVSEAQLYELFTQVGQVVSIRVCRDLITRRSLGYAYVNYNSAQDATRALELL 89
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N ++ P+ I F P R +F+KNL +T+D + L F FG
Sbjct: 90 NFSVLNGNPIRIMFSHRDPSIRKSGTA---------NIFIKNLDKTIDNKALHDTFSAFG 140
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
I+ K+ D +G+SKG+GF+QF ++A AI ++NG ++ FV G V
Sbjct: 141 GILSCKVAVDGSGQSKGYGFVQFEQEESALTAIEKVNGMLLNDKQVFV-------GPFVR 193
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIE 270
+ + ++ N ++V NL N + + +F +GTI+S+ ++ D K GF+
Sbjct: 194 RQERDQSGGVSKFNNVYVKNLGENTTEDDLKNVFGAYGTISSAVVMRDSDGKSKCFGFVN 253
Query: 271 FIMPKHATHAVSTMNG 286
F P +A AV +NG
Sbjct: 254 FEHPDNAAKAVEALNG 269
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 101/189 (53%), Gaps = 9/189 (4%)
Query: 27 ENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPA 86
++ V K N ++V NL + L N F +GT+ V R+ + +S+ F + F P
Sbjct: 199 QSGGVSKFNNVYVKNLGENTTEDDLKNVFGAYGTISSAVVMRDSDGKSKCFGFVNFEHPD 258
Query: 87 EAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKV--------FVKNL 138
A KA +NG K + + K +R + + +Q +K+++ ++KNL
Sbjct: 259 NAAKAVEALNGKKRDEKEWYVGRAQ-KKSEREAELRAKFEQERKERIEKYQGVNLYLKNL 317
Query: 139 VETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQH 198
+TVD+E+L+ F +G I K++RD G+S+G GF+ F S + A +A+ EMNG+M+
Sbjct: 318 DDTVDDEKLRELFADYGTITSCKVMRDPQGQSRGSGFVAFSSPEEATRAVTEMNGKMVGS 377
Query: 199 NSTFVSLAE 207
+V+LA+
Sbjct: 378 KPLYVALAQ 386
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 57/94 (60%)
Query: 26 KENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTP 85
KE + Y+ L++ NL+ +VD++ L F +GT+ +V R+ +SRG + F++P
Sbjct: 301 KERIEKYQGVNLYLKNLDDTVDDEKLRELFADYGTITSCKVMRDPQGQSRGSGFVAFSSP 360
Query: 86 AEAKKARVEMNGHLIGSKPVIITFVELKPGQRSK 119
EA +A EMNG ++GSKP+ + + K +R++
Sbjct: 361 EEATRAVTEMNGKMVGSKPLYVALAQRKEERRAR 394
>gi|255080002|ref|XP_002503581.1| predicted protein [Micromonas sp. RCC299]
gi|226518848|gb|ACO64839.1| predicted protein [Micromonas sp. RCC299]
Length = 597
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 87/277 (31%), Positives = 145/277 (52%), Gaps = 18/277 (6%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ +DN+AL + F +FG + +VA + S+G+ + F A++A ++N
Sbjct: 110 IFIKNLDKEIDNKALYDTFSQFGNIVSAKVAADGQGVSKGYGFVQFAEQEAAQQAIDKVN 169
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G L+ K V + P QR G + + V+VKNL E+VDE++LK F G
Sbjct: 170 GMLLNDKQVYVG-----PFQRRGERGGGPTTF--NNVYVKNLHESVDEDKLKEVFGAVGK 222
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGR-MIQHNSTFVSLAEIVPGKKV- 214
+ V I++D GKSKGFGF+ F +AA +A+ +++G I+ + V A+ ++
Sbjct: 223 LTSVVIMKDGEGKSKGFGFVCFEESEAASEAVEKLDGYDKIEDKAWVVCRAQKKAEREAE 282
Query: 215 ----FPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KH 265
F + L+ +++ NL +++++ ELFA FGTITS ++ D +
Sbjct: 283 LKAKFDAERRERLEKMAGANLYIKNLEDTVDDAKLRELFAEFGTITSCRVMRDASGASRG 342
Query: 266 IGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F+ F AT AV+ MNG + +KPL V L+ K
Sbjct: 343 SAFVAFSSADEATRAVTEMNGKMAGTKPLYVALAQRK 379
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 71/257 (27%), Positives = 125/257 (48%), Gaps = 24/257 (9%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+ +L+ + L F G + +RV R+ S G+A + F A+A +A +
Sbjct: 22 LYCGDLDSNCTEAQLYELFSTIGPVVSIRVCRDLITRRSLGYAYVNFQQGADAARAIDVL 81
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N +++ KP+ I + + P R VG +F+KNL + +D + L F +FG
Sbjct: 82 NFNVVNGKPIRIMYSQRDPALRKSGVG---------NIFIKNLDKEIDNKALYDTFSQFG 132
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ D G SKG+GF+QF +AA++AI ++NG ++ +V F
Sbjct: 133 NIVSAKVAADGQGVSKGYGFVQFAEQEAAQQAIDKVNGMLLNDKQVYVG---------PF 183
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIE 270
+ P N ++V NL +++ + +E+F G +TS ++ D K GF+
Sbjct: 184 QRRGERGGGPTTFNNVYVKNLHESVDEDKLKEVFGAVGKLTSVVIMKDGEGKSKGFGFVC 243
Query: 271 FIMPKHATHAVSTMNGH 287
F + A+ AV ++G+
Sbjct: 244 FEESEAASEAVEKLDGY 260
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 96/181 (53%), Gaps = 8/181 (4%)
Query: 35 NELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVE 94
N ++V NL SVD L F G L V + ++ +S+GF + F A +A +
Sbjct: 197 NNVYVKNLHESVDEDKLKEVFGAVGKLTSVVIMKDGEGKSKGFGFVCFEESEAASEAVEK 256
Query: 95 MNGH-LIGSKPVIITFVELKPGQRS--KPVGPEEKQYKKDK-----VFVKNLVETVDEEE 146
++G+ I K ++ + K + + K E++ + +K +++KNL +TVD+ +
Sbjct: 257 LDGYDKIEDKAWVVCRAQKKAEREAELKAKFDAERRERLEKMAGANLYIKNLEDTVDDAK 316
Query: 147 LKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLA 206
L+ F +FG I +++RD +G S+G F+ F S A +A+ EMNG+M +V+LA
Sbjct: 317 LRELFAEFGTITSCRVMRDASGASRGSAFVAFSSADEATRAVTEMNGKMAGTKPLYVALA 376
Query: 207 E 207
+
Sbjct: 377 Q 377
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 50/83 (60%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L++ NLE +VD+ L F +FGT+ RV R+ + SRG A + F++ EA +A EMN
Sbjct: 303 LYIKNLEDTVDDAKLRELFAEFGTITSCRVMRDASGASRGSAFVAFSSADEATRAVTEMN 362
Query: 97 GHLIGSKPVIITFVELKPGQRSK 119
G + G+KP+ + + K +R +
Sbjct: 363 GKMAGTKPLYVALAQRKEDRRMR 385
>gi|145349140|ref|XP_001418998.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144579228|gb|ABO97291.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 572
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 85/276 (30%), Positives = 141/276 (51%), Gaps = 16/276 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ ++DN+AL++ F +FGT+ +VA + S+G+ + F T A+ A +N
Sbjct: 127 IFIKNLDKAIDNKALLDTFAQFGTITSAKVAMDGQGNSKGYGFVQFETQEAAQAAIDNVN 186
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G + K V + P QR + + K + V+VKNL E + +E+L+ F + G
Sbjct: 187 GMELNDKQVYV-----GPFQR-RAERSNTGEAKFNNVYVKNLSENLSDEKLREKFAEHGA 240
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFP 216
+ I+RDE GKSKGFGF+ + + A A+ +++G + V A+ ++
Sbjct: 241 VTSCVIMRDEEGKSKGFGFVCYEEPEGAAAAVEKLDGYTEDEKTWVVCRAQKKAEREAEL 300
Query: 217 KVKPPLLQPARKNK-----IFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHI 266
K K + R K +++ NL ++ + ELF FGTITS ++ D +
Sbjct: 301 KAKFDQERRERMEKMAGANLYIKNLEDGTDDEKLRELFKEFGTITSCRVMRDASGVSRGS 360
Query: 267 GFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F+ F P AT AV+ MNG + +KPL V L+ K
Sbjct: 361 AFVAFSSPDEATRAVTEMNGKMVGAKPLYVALAQRK 396
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 78/267 (29%), Positives = 129/267 (48%), Gaps = 23/267 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +LE SV L +F G + +RV R+ S G+A + F +P +A A +
Sbjct: 39 LYVGDLETSVTEAQLYEKFSSIGPVVSIRVCRDLITRRSLGYAYVNFQSPNDAAHAIDVL 98
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N +I KP+ + + + P R VG +F+KNL + +D + L F +FG
Sbjct: 99 NFQVINGKPIRVLYSQRDPAVRRSGVG---------NIFIKNLDKAIDNKALLDTFAQFG 149
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
I K+ D G SKG+GF+QF + +AA+ AI +NG + +V P ++
Sbjct: 150 TITSAKVAMDGQGNSKGYGFVQFETQEAAQAAIDNVNGMELNDKQVYVG-----PFQR-- 202
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIE 270
+ + A+ N ++V NL N+++ + E FA G +TS ++ D K GF+
Sbjct: 203 -RAERSNTGEAKFNNVYVKNLSENLSDEKLREKFAEHGAVTSCVIMRDEEGKSKGFGFVC 261
Query: 271 FIMPKHATHAVSTMNGHVFKSKPLKVT 297
+ P+ A AV ++G+ K V
Sbjct: 262 YEEPEGAAAAVEKLDGYTEDEKTWVVC 288
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 103/193 (53%), Gaps = 9/193 (4%)
Query: 23 RSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVF 82
R+ + N K N ++V NL ++ ++ L +F + G + + R++ +S+GF + +
Sbjct: 203 RAERSNTGEAKFNNVYVKNLSENLSDEKLREKFAEHGAVTSCVIMRDEEGKSKGFGFVCY 262
Query: 83 NTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDK--------VF 134
P A A +++G+ K ++ + K +R + + Q ++++ ++
Sbjct: 263 EEPEGAAAAVEKLDGYTEDEKTWVVCRAQ-KKAEREAELKAKFDQERRERMEKMAGANLY 321
Query: 135 VKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGR 194
+KNL + D+E+L+ F +FG I +++RD +G S+G F+ F S A +A+ EMNG+
Sbjct: 322 IKNLEDGTDDEKLRELFKEFGTITSCRVMRDASGVSRGSAFVAFSSPDEATRAVTEMNGK 381
Query: 195 MIQHNSTFVSLAE 207
M+ +V+LA+
Sbjct: 382 MVGAKPLYVALAQ 394
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 52/83 (62%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L++ NLE D++ L FK+FGT+ RV R+ + SRG A + F++P EA +A EMN
Sbjct: 320 LYIKNLEDGTDDEKLRELFKEFGTITSCRVMRDASGVSRGSAFVAFSSPDEATRAVTEMN 379
Query: 97 GHLIGSKPVIITFVELKPGQRSK 119
G ++G+KP+ + + K +R +
Sbjct: 380 GKMVGAKPLYVALAQRKEERRMR 402
Score = 46.2 bits (108), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 7/93 (7%)
Query: 220 PPLLQP-ARKNKIFVANLPSNINNSEFEELFARFGTITS----SSLVSDKHIGF--IEFI 272
P QP A + ++V +L +++ ++ E F+ G + S L++ + +G+ + F
Sbjct: 27 PAAQQPGAGTSSLYVGDLETSVTEAQLYEKFSSIGPVVSIRVCRDLITRRSLGYAYVNFQ 86
Query: 273 MPKHATHAVSTMNGHVFKSKPLKVTLSGTKPGV 305
P A HA+ +N V KP++V S P V
Sbjct: 87 SPNDAAHAIDVLNFQVINGKPIRVLYSQRDPAV 119
>gi|452001105|gb|EMD93565.1| hypothetical protein COCHEDRAFT_1096208 [Cochliobolus
heterostrophus C5]
Length = 749
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 84/266 (31%), Positives = 133/266 (50%), Gaps = 20/266 (7%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+PSV L F G + +RV R+ S G+A + +N+ + +KA E+
Sbjct: 50 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKALEEL 109
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N +I KP I + + P R G VF+KNL +D + L F FG
Sbjct: 110 NYTVIKGKPCRIMWSQRDPALRKTGQG---------NVFIKNLDHAIDNKALHDTFAAFG 160
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ +DE G SKG+GF+ + + +AA AI +NG ++ FV +P K+
Sbjct: 161 NILSCKVAQDELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFV--GHHIPKKERM 218
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKH-----IGFIE 270
K + A I+V N+ ++++ EF ELF + G ITS+S+ D+ GF+
Sbjct: 219 SKFEE---MKANFTNIYVKNIDLDVSDEEFRELFEKHGDITSASIARDEQGKSRGFGFVN 275
Query: 271 FIMPKHATHAVSTMNGHVFKSKPLKV 296
+I + A+ AV +N F+ + L V
Sbjct: 276 YIKHEAASAAVDALNDTDFRGQKLYV 301
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 72/265 (27%), Positives = 131/265 (49%), Gaps = 18/265 (6%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK W + D R + N + + NL+ ++DN+AL + F FG +
Sbjct: 115 KGKPCRIMWSQ---RDPALRKTGQGN-------VFIKNLDHAIDNKALHDTFAAFGNILS 164
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+VA+++ S+G+ + + T A A +NG L+ K V + K + SK
Sbjct: 165 CKVAQDELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKERMSKF--- 221
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
EE + ++VKN+ V +EE + F K G+I I RDE GKS+GFGF+ + ++A
Sbjct: 222 EEMKANFTNIYVKNIDLDVSDEEFRELFEKHGDITSASIARDEQGKSRGFGFVNYIKHEA 281
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAEIVPGK--KVFPKVKPPLLQPARKNK---IFVANLPS 238
A A+ +N + +V A+ + ++ + + L+ K + +++ NL
Sbjct: 282 ASAAVDALNDTDFRGQKLYVGRAQKKHEREEELRKQYEAARLEKQSKYQGVNLYIKNLND 341
Query: 239 NINNSEFEELFARFGTITSSSLVSD 263
++++ + ++F FGTITS+ ++ D
Sbjct: 342 DVDDEKLRDMFTPFGTITSAKVMRD 366
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 57/231 (24%), Positives = 98/231 (42%), Gaps = 61/231 (26%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
++V N++ V ++ F+K G + +AR++ +SRGF + + A A +N
Sbjct: 231 IYVKNIDLDVSDEEFRELFEKHGDITSASIARDEQGKSRGFGFVNYIKHEAASAAVDALN 290
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPE------EKQ--YKKDKVFVKNLVETVDEEELK 148
+ + + + K +R + + + EKQ Y+ +++KNL + VD+E+L+
Sbjct: 291 DTDFRGQKLYVGRAQ-KKHEREEELRKQYEAARLEKQSKYQGVNLYIKNLNDDVDDEKLR 349
Query: 149 SHFIKFGNIIEVKIVRD-------------------------------------EN---- 167
F FG I K++RD EN
Sbjct: 350 DMFTPFGTITSAKVMRDAMPAERSETPGDEKKEESKEEAEKTEESKEGADDKKDENKPGE 409
Query: 168 -----------GKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
GKSKGFGF+ F + A KA+ EMN +MI+ +V+LA+
Sbjct: 410 KVTIKGEKKILGKSKGFGFVCFSNPDEATKAVTEMNQKMIEGKPLYVALAQ 460
Score = 42.4 bits (98), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 54/146 (36%), Gaps = 54/146 (36%)
Query: 20 EGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARN---------- 69
E AR K++ Y+ L++ NL VD++ L + F FGT+ +V R+
Sbjct: 319 EAARLEKQSK--YQGVNLYIKNLNDDVDDEKLRDMFTPFGTITSAKVMRDAMPAERSETP 376
Query: 70 ------------------------KNDE------------------SRGFAIIVFNTPAE 87
K DE S+GF + F+ P E
Sbjct: 377 GDEKKEESKEEAEKTEESKEGADDKKDENKPGEKVTIKGEKKILGKSKGFGFVCFSNPDE 436
Query: 88 AKKARVEMNGHLIGSKPVIITFVELK 113
A KA EMN +I KP+ + + K
Sbjct: 437 ATKAVTEMNQKMIEGKPLYVALAQRK 462
>gi|317025248|ref|XP_001388739.2| polyadenylate-binding protein, cytoplasmic and nuclear [Aspergillus
niger CBS 513.88]
gi|350637942|gb|EHA26298.1| hypothetical protein ASPNIDRAFT_46760 [Aspergillus niger ATCC 1015]
Length = 764
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 84/268 (31%), Positives = 132/268 (49%), Gaps = 24/268 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+PSV L F G + +RV R+ S G+A + +N A+ ++A ++
Sbjct: 56 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 115
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI KP I + + P R G VF+KNL +D + L F FG
Sbjct: 116 NYTLIKGKPCRIMWSQRDPALRKTGQG---------NVFIKNLDSAIDNKALHDTFAAFG 166
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ +DE G SKG+GF+ + + +AA AI +NG ++ FV G +
Sbjct: 167 NILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFV-------GHHIS 219
Query: 216 PKVKPPLLQPARKN--KIFVANLPSNINNSEFEELFARFGTITSSSLVSDKH-----IGF 268
K + + + N +++ NL S I++ EF ++F +FG ITS++L D+ GF
Sbjct: 220 KKDRQSKFEEMKANFTNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQEGKSRGFGF 279
Query: 269 IEFIMPKHATHAVSTMNGHVFKSKPLKV 296
+ F + A AV MN +S+ L V
Sbjct: 280 VNFSTHESAQAAVEEMNDKEIRSQKLYV 307
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 78/268 (29%), Positives = 141/268 (52%), Gaps = 18/268 (6%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK W + D R + N + + NL+ ++DN+AL + F FG +
Sbjct: 121 KGKPCRIMWSQ---RDPALRKTGQGN-------VFIKNLDSAIDNKALHDTFAAFGNILS 170
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+VA+++ S+G+ + + T A A +NG L+ K V + K ++SK
Sbjct: 171 CKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKF--- 227
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
EE + V++KNL +D++E + F KFG I + RD+ GKS+GFGF+ F ++++
Sbjct: 228 EEMKANFTNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHES 287
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAEIVPGK--KVFPKVKPPLLQPARKNK---IFVANLPS 238
A+ A+ EMN + I+ +V A+ + ++ + + L+ A K + ++V NL
Sbjct: 288 AQAAVEEMNDKEIRSQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTD 347
Query: 239 NINNSEFEELFARFGTITSSSLVSDKHI 266
+I++ + ELF +GTITS+ ++ D ++
Sbjct: 348 DIDDEKLRELFGPYGTITSAKVMRDTNV 375
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/239 (25%), Positives = 103/239 (43%), Gaps = 72/239 (30%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+++ NL+ +D+ F+KFG + ++R++ +SRGF + F+T A+ A EMN
Sbjct: 237 VYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVEEMN 296
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKV-----------FVKNLVETVDEE 145
I S+ + + + K +R + + KQY+ ++ +VKNL + +D+E
Sbjct: 297 DKEIRSQKLYVGRAQKKH-EREEEL---RKQYEAARLEKASKYQGVNLYVKNLTDDIDDE 352
Query: 146 ELKSHFIKFGNIIEVKIV------RDEN-------------------------------- 167
+L+ F +G I K++ RD++
Sbjct: 353 KLRELFGPYGTITSAKVMRDTNVERDQSPDSAGKEKEADKENDKEATPEAEKAEKAEEKP 412
Query: 168 -------------------GKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
GKSKGFGF+ F S A KA+ EMN RM+ +V+LA+
Sbjct: 413 SESSEEKDKEAKKSDKKPFGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQ 471
Score = 41.6 bits (96), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 28/46 (60%)
Query: 74 SRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSK 119
S+GF + F++P EA KA EMN ++ KP+ + + K +RS+
Sbjct: 434 SKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQ 479
>gi|256075087|ref|XP_002573852.1| polyadenylate binding protein [Schistosoma mansoni]
gi|360044949|emb|CCD82497.1| putative polyadenylate binding protein [Schistosoma mansoni]
Length = 724
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 84/267 (31%), Positives = 138/267 (51%), Gaps = 28/267 (10%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L P V + AL +F + G + RV R+ S G+ + F P A++A +
Sbjct: 15 LYVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRHSLGYGYVNFEDPKHAEQALEVL 74
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N + +P+ I + + P R + K +F+KNL ++++++EL F FG
Sbjct: 75 NYESLMGRPIRIMWSQRDPSLR---------KSGKGNIFIKNLDKSIEQKELYDTFSFFG 125
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
I+ KIV DENG+SKG+GF+ F + AE+AI ++N +I+ +V K
Sbjct: 126 RILSCKIVMDENGQSKGYGFVHFEKEECAERAIEKINNMIIRDRVVYVG--------KFI 177
Query: 216 PKVKPPLLQPARK---NKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIG 267
PK + ARK N +++ N P +N + +E+F FG I S+ ++ D K G
Sbjct: 178 PKTE--RKSQARKVKFNNLYIKNFPPETDNEKLKEMFNEFGEIKSACVMKDSEGKSKGFG 235
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPL 294
F+ F+ P HA +AV TM+G + + L
Sbjct: 236 FVCFLDPDHAENAVKTMHGKEIEGRAL 262
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 79/277 (28%), Positives = 145/277 (52%), Gaps = 16/277 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S++ + L + F FG + ++ ++N +S+G+ + F A++A ++N
Sbjct: 103 IFIKNLDKSIEQKELYDTFSFFGRILSCKIVMDENGQSKGYGFVHFEKEECAERAIEKIN 162
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
+I + V + K ++S + ++ K + +++KN D E+LK F +FG
Sbjct: 163 NMIIRDRVVYVGKFIPKTERKS-----QARKVKFNNLYIKNFPPETDNEKLKEMFNEFGE 217
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFP 216
I +++D GKSKGFGF+ F AE A+ M+G+ I+ + + + A+ ++
Sbjct: 218 IKSACVMKDSEGKSKGFGFVCFLDPDHAENAVKTMHGKEIEGRALYCARAQRKEERQEEL 277
Query: 217 KVKPPLLQPARKNK------IFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KH 265
K + + R++ ++V NL NI++ EE F+ G+ITS+ ++ D K
Sbjct: 278 KQRLEKQRAERQSSYMLNVNLYVKNLDDNIDDKRLEEAFSVHGSITSAKVMKDANNRSKG 337
Query: 266 IGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ F P+ A AV+ MNG + SKPL V L+ K
Sbjct: 338 FGFVCFANPEQAARAVTDMNGTIIGSKPLYVALAQRK 374
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 99/190 (52%), Gaps = 8/190 (4%)
Query: 26 KENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTP 85
K + K N L++ N P DN+ L F +FG ++ V ++ +S+GF + F P
Sbjct: 183 KSQARKVKFNNLYIKNFPPETDNEKLKEMFNEFGEIKSACVMKDSEGKSKGFGFVCFLDP 242
Query: 86 AEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDK--------VFVKN 137
A+ A M+G I + + + K ++ + EKQ + + ++VKN
Sbjct: 243 DHAENAVKTMHGKEIEGRALYCARAQRKEERQEELKQRLEKQRAERQSSYMLNVNLYVKN 302
Query: 138 LVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQ 197
L + +D++ L+ F G+I K+++D N +SKGFGF+ F + + A +A+ +MNG +I
Sbjct: 303 LDDNIDDKRLEEAFSVHGSITSAKVMKDANNRSKGFGFVCFANPEQAARAVTDMNGTIIG 362
Query: 198 HNSTFVSLAE 207
+V+LA+
Sbjct: 363 SKPLYVALAQ 372
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 71/123 (57%), Gaps = 1/123 (0%)
Query: 20 EGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAI 79
E R+ ++++ + N L+V NL+ ++D++ L F G++ +V ++ N+ S+GF
Sbjct: 282 EKQRAERQSSYMLNVN-LYVKNLDDNIDDKRLEEAFSVHGSITSAKVMKDANNRSKGFGF 340
Query: 80 IVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLV 139
+ F P +A +A +MNG +IGSKP+ + + K +R+K + +++ + + V +++
Sbjct: 341 VCFANPEQAARAVTDMNGTIIGSKPLYVALAQRKEDRRAKLIEEHQQRMAQYRNPVASMI 400
Query: 140 ETV 142
V
Sbjct: 401 PAV 403
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 41/83 (49%), Gaps = 6/83 (7%)
Query: 229 NKIFVANLPSNINNSEFEELFARFGTITSSSLVSD---KH---IGFIEFIMPKHATHAVS 282
+ ++V +L +++S + F+ G + S+ + D +H G++ F PKHA A+
Sbjct: 13 SSLYVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRHSLGYGYVNFEDPKHAEQALE 72
Query: 283 TMNGHVFKSKPLKVTLSGTKPGV 305
+N +P+++ S P +
Sbjct: 73 VLNYESLMGRPIRIMWSQRDPSL 95
>gi|398327|emb|CAA81127.1| poly(A)-mRNA binding protein [Anemia phyllitidis]
Length = 638
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 89/284 (31%), Positives = 141/284 (49%), Gaps = 32/284 (11%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NLE S+DN+AL + F FGT+ RV + S+G+ + F A+ A ++N
Sbjct: 116 IFIKNLEKSIDNKALHDTFSAFGTILSCRVVMDDAGNSKGYGFVQFEKEESAQIAIEKVN 175
Query: 97 GHLIGSKPVIIT-FVELKPGQRSKPVGPEEKQYKKDK----VFVKNLVETVDEEELKSHF 151
G LI + V + F+ +E+ K V+VKNL E +E+L+ F
Sbjct: 176 GMLINDRQVSVAPFIR-----------KQERDMASSKNFNNVYVKNLAEATTDEDLRKVF 224
Query: 152 IKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPG 211
FG I ++RD +GKSK FGF+ F + A A+ +NG++I +V A+
Sbjct: 225 AGFGPISSAVVMRDADGKSKCFGFVNFENVDDAANAVENLNGKLINEKEWYVGRAQKKSE 284
Query: 212 KKVFPKVKPPLLQPARKNK--------IFVANLPSNINNSEFEELFARFGTITSSSLVSD 263
++ K K + RK K +++ N+ +I++ + ELFA FGT+TS ++
Sbjct: 285 REAELKAK---FEQVRKEKEEKFQGVNLYLKNIDDSIDDEKLRELFAVFGTVTSCKVMKS 341
Query: 264 KH-----IGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ F P+ A AV+ MNG + SKPL V L+ K
Sbjct: 342 PQGQSMGSGFVTFSAPEEAMQAVNDMNGKMVGSKPLYVALAQRK 385
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 78/271 (28%), Positives = 131/271 (48%), Gaps = 23/271 (8%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKK 90
Y L+V +L+P V L F + G + +RV R+ +S G+A + + T +A +
Sbjct: 23 YVAPSLYVGDLDPDVSESELYEVFNQIGQVVSIRVCRDLMTKKSLGYAYVNYGTHQDASQ 82
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A +N L+ KP+ I + P R +F+KNL +++D + L
Sbjct: 83 ALELLNFTLVKGKPIRIMYSHRDPSIRKSGAA---------NIFIKNLEKSIDNKALHDT 133
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVP 210
F FG I+ ++V D+ G SKG+GF+QF ++A+ AI ++NG +I N VS+A +
Sbjct: 134 FSAFGTILSCRVVMDDAGNSKGYGFVQFEKEESAQIAIEKVNGMLI--NDRQVSVAPFI- 190
Query: 211 GKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KH 265
K + + N ++V NL + + ++FA FG I+S+ ++ D K
Sbjct: 191 -----RKQERDMASSKNFNNVYVKNLAEATTDEDLRKVFAGFGPISSAVVMRDADGKSKC 245
Query: 266 IGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
GF+ F A +AV +NG + K V
Sbjct: 246 FGFVNFENVDDAANAVENLNGKLINEKEWYV 276
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 96/181 (53%), Gaps = 9/181 (4%)
Query: 35 NELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVE 94
N ++V NL + ++ L F FG + V R+ + +S+ F + F +A A
Sbjct: 204 NNVYVKNLAEATTDEDLRKVFAGFGPISSAVVMRDADGKSKCFGFVNFENVDDAANAVEN 263
Query: 95 MNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDK--------VFVKNLVETVDEEE 146
+NG LI K + + K +R + + +Q +K+K +++KN+ +++D+E+
Sbjct: 264 LNGKLINEKEWYVGRAQ-KKSEREAELKAKFEQVRKEKEEKFQGVNLYLKNIDDSIDDEK 322
Query: 147 LKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLA 206
L+ F FG + K+++ G+S G GF+ F + + A +A+ +MNG+M+ +V+LA
Sbjct: 323 LRELFAVFGTVTSCKVMKSPQGQSMGSGFVTFSAPEEAMQAVNDMNGKMVGSKPLYVALA 382
Query: 207 E 207
+
Sbjct: 383 Q 383
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 55/94 (58%)
Query: 26 KENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTP 85
KE + ++ L++ N++ S+D++ L F FGT+ +V ++ +S G + F+ P
Sbjct: 298 KEKEEKFQGVNLYLKNIDDSIDDEKLRELFAVFGTVTSCKVMKSPQGQSMGSGFVTFSAP 357
Query: 86 AEAKKARVEMNGHLIGSKPVIITFVELKPGQRSK 119
EA +A +MNG ++GSKP+ + + K +R++
Sbjct: 358 EEAMQAVNDMNGKMVGSKPLYVALAQRKEERRAR 391
>gi|256075085|ref|XP_002573851.1| polyadenylate binding protein [Schistosoma mansoni]
gi|360044948|emb|CCD82496.1| putative polyadenylate binding protein [Schistosoma mansoni]
Length = 726
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 84/267 (31%), Positives = 138/267 (51%), Gaps = 28/267 (10%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L P V + AL +F + G + RV R+ S G+ + F P A++A +
Sbjct: 15 LYVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRHSLGYGYVNFEDPKHAEQALEVL 74
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N + +P+ I + + P R + K +F+KNL ++++++EL F FG
Sbjct: 75 NYESLMGRPIRIMWSQRDPSLR---------KSGKGNIFIKNLDKSIEQKELYDTFSFFG 125
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
I+ KIV DENG+SKG+GF+ F + AE+AI ++N +I+ +V K
Sbjct: 126 RILSCKIVMDENGQSKGYGFVHFEKEECAERAIEKINNMIIRDRVVYVG--------KFI 177
Query: 216 PKVKPPLLQPARK---NKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIG 267
PK + ARK N +++ N P +N + +E+F FG I S+ ++ D K G
Sbjct: 178 PKTE--RKSQARKVKFNNLYIKNFPPETDNEKLKEMFNEFGEIKSACVMKDSEGKSKGFG 235
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPL 294
F+ F+ P HA +AV TM+G + + L
Sbjct: 236 FVCFLDPDHAENAVKTMHGKEIEGRAL 262
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 79/275 (28%), Positives = 144/275 (52%), Gaps = 16/275 (5%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S++ + L + F FG + ++ ++N +S+G+ + F A++A ++N
Sbjct: 105 IKNLDKSIEQKELYDTFSFFGRILSCKIVMDENGQSKGYGFVHFEKEECAERAIEKINNM 164
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
+I + V + K ++S + ++ K + +++KN D E+LK F +FG I
Sbjct: 165 IIRDRVVYVGKFIPKTERKS-----QARKVKFNNLYIKNFPPETDNEKLKEMFNEFGEIK 219
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKV 218
+++D GKSKGFGF+ F AE A+ M+G+ I+ + + + A+ ++ K
Sbjct: 220 SACVMKDSEGKSKGFGFVCFLDPDHAENAVKTMHGKEIEGRALYCARAQRKEERQEELKQ 279
Query: 219 KPPLLQPARKNK------IFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIG 267
+ + R++ ++V NL NI++ EE F+ G+ITS+ ++ D K G
Sbjct: 280 RLEKQRAERQSSYMLNVNLYVKNLDDNIDDKRLEEAFSVHGSITSAKVMKDANNRSKGFG 339
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F+ F P+ A AV+ MNG + SKPL V L+ K
Sbjct: 340 FVCFANPEQAARAVTDMNGTIIGSKPLYVALAQRK 374
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 99/190 (52%), Gaps = 8/190 (4%)
Query: 26 KENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTP 85
K + K N L++ N P DN+ L F +FG ++ V ++ +S+GF + F P
Sbjct: 183 KSQARKVKFNNLYIKNFPPETDNEKLKEMFNEFGEIKSACVMKDSEGKSKGFGFVCFLDP 242
Query: 86 AEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDK--------VFVKN 137
A+ A M+G I + + + K ++ + EKQ + + ++VKN
Sbjct: 243 DHAENAVKTMHGKEIEGRALYCARAQRKEERQEELKQRLEKQRAERQSSYMLNVNLYVKN 302
Query: 138 LVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQ 197
L + +D++ L+ F G+I K+++D N +SKGFGF+ F + + A +A+ +MNG +I
Sbjct: 303 LDDNIDDKRLEEAFSVHGSITSAKVMKDANNRSKGFGFVCFANPEQAARAVTDMNGTIIG 362
Query: 198 HNSTFVSLAE 207
+V+LA+
Sbjct: 363 SKPLYVALAQ 372
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 71/123 (57%), Gaps = 1/123 (0%)
Query: 20 EGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAI 79
E R+ ++++ + N L+V NL+ ++D++ L F G++ +V ++ N+ S+GF
Sbjct: 282 EKQRAERQSSYMLNVN-LYVKNLDDNIDDKRLEEAFSVHGSITSAKVMKDANNRSKGFGF 340
Query: 80 IVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLV 139
+ F P +A +A +MNG +IGSKP+ + + K +R+K + +++ + + V +++
Sbjct: 341 VCFANPEQAARAVTDMNGTIIGSKPLYVALAQRKEDRRAKLIEEHQQRMAQYRNPVASMI 400
Query: 140 ETV 142
V
Sbjct: 401 PAV 403
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 41/83 (49%), Gaps = 6/83 (7%)
Query: 229 NKIFVANLPSNINNSEFEELFARFGTITSSSLVSD---KH---IGFIEFIMPKHATHAVS 282
+ ++V +L +++S + F+ G + S+ + D +H G++ F PKHA A+
Sbjct: 13 SSLYVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRHSLGYGYVNFEDPKHAEQALE 72
Query: 283 TMNGHVFKSKPLKVTLSGTKPGV 305
+N +P+++ S P +
Sbjct: 73 VLNYESLMGRPIRIMWSQRDPSL 95
>gi|225438781|ref|XP_002283105.1| PREDICTED: polyadenylate-binding protein 2 [Vitis vinifera]
gi|296082381|emb|CBI21386.3| unnamed protein product [Vitis vinifera]
Length = 654
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 81/276 (29%), Positives = 147/276 (53%), Gaps = 15/276 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ ++DN+AL + F FG + ++A + + +S+G+ + F+ AK A ++N
Sbjct: 122 IFIKNLDKAIDNKALYDTFSTFGAILSCKIATDASGQSKGYGFVQFDNEESAKNATDKLN 181
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G L+ K V + P R + + K + V+VKNL+E+ +E+LK+ F ++G
Sbjct: 182 GMLLNDKQVYV-----GPFVRKQERESATNKTKFNNVYVKNLLESTTDEDLKNIFGEYGP 236
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKV-- 214
I +++D +GKSK FGF+ F + A +++ +NG+ +V A+ ++V
Sbjct: 237 ITSAVVMQDGDGKSKCFGFVNFENADDAARSVEALNGKKFDDKEWYVGKAQKKTEREVEL 296
Query: 215 ---FPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHI 266
F + + + ++V NL +I + + ELF+ FGTITS ++ D +
Sbjct: 297 KGRFEQSLKEAVDKFQGLNLYVKNLDDSIADDKLRELFSEFGTITSCKVMRDPNGISRGS 356
Query: 267 GFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ F + A+ A++ MNG + SKPL V L+ K
Sbjct: 357 GFVAFSTAEEASRALADMNGKMVASKPLYVALAQRK 392
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 70/262 (26%), Positives = 123/262 (46%), Gaps = 22/262 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKKARVEM 95
L+V +LE +V + L + F + G + VRV R+ S G+ + + +A +A +
Sbjct: 34 LYVGDLESNVTDSHLYDLFGQLGPVVSVRVCRDLSTRRSLGYGYVNYGNTQDAARALDML 93
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N + KP+ I + P R +F+KNL + +D + L F FG
Sbjct: 94 NFTPLNGKPIRIMYSFRDPSIRRSGTA---------NIFIKNLDKAIDNKALYDTFSTFG 144
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
I+ KI D +G+SKG+GF+QF + ++A+ A ++NG ++ +V G V
Sbjct: 145 AILSCKIATDASGQSKGYGFVQFDNEESAKNATDKLNGMLLNDKQVYV-------GPFVR 197
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIE 270
+ + + N ++V NL + + + + +F +G ITS+ ++ D K GF+
Sbjct: 198 KQERESATNKTKFNNVYVKNLLESTTDEDLKNIFGEYGPITSAVVMQDGDGKSKCFGFVN 257
Query: 271 FIMPKHATHAVSTMNGHVFKSK 292
F A +V +NG F K
Sbjct: 258 FENADDAARSVEALNGKKFDDK 279
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 109/207 (52%), Gaps = 14/207 (6%)
Query: 33 KENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKAR 92
K N ++V NL S ++ L N F ++G + V ++ + +S+ F + F +A ++
Sbjct: 209 KFNNVYVKNLLESTTDEDLKNIFGEYGPITSAVVMQDGDGKSKCFGFVNFENADDAARSV 268
Query: 93 VEMNGHLIGSKPVII--------TFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDE 144
+NG K + VELK G+ + + +++ ++VKNL +++ +
Sbjct: 269 EALNGKKFDDKEWYVGKAQKKTEREVELK-GRFEQSLKEAVDKFQGLNLYVKNLDDSIAD 327
Query: 145 EELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVS 204
++L+ F +FG I K++RD NG S+G GF+ F + + A +A+ +MNG+M+ +V+
Sbjct: 328 DKLRELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASRALADMNGKMVASKPLYVA 387
Query: 205 LAEIVPGKKV-----FPKVKPPLLQPA 226
LA+ ++ F +++P + P+
Sbjct: 388 LAQRKEDRRARLQAQFSQMRPAAMAPS 414
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 55/97 (56%)
Query: 23 RSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVF 82
+S KE ++ L+V NL+ S+ + L F +FGT+ +V R+ N SRG + F
Sbjct: 302 QSLKEAVDKFQGLNLYVKNLDDSIADDKLRELFSEFGTITSCKVMRDPNGISRGSGFVAF 361
Query: 83 NTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSK 119
+T EA +A +MNG ++ SKP+ + + K +R++
Sbjct: 362 STAEEASRALADMNGKMVASKPLYVALAQRKEDRRAR 398
>gi|356510461|ref|XP_003523956.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
gi|83853808|gb|ABC47841.1| poly(A)-binding protein [Glycine max]
Length = 630
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 82/274 (29%), Positives = 143/274 (52%), Gaps = 15/274 (5%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ ++D++AL + F FG + +VA + + +S+G + F + A+ A ++NG
Sbjct: 116 IKNLDKAIDHKALYDTFSAFGNILSCKVATDASGQSKGHGFVQFESEESAQNAIDKLNGM 175
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
LI K V + K + S G K + VFVKNL++++ E +L+ F ++G I
Sbjct: 176 LINDKQVFVGPFLRKQDRESALSGT-----KFNNVFVKNLLDSMTEADLERIFGEYGAIT 230
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKV---- 214
++RD +GKSKGFGF+ F + A KA+ +NG+ +V A+ +++
Sbjct: 231 SAVVMRDVDGKSKGFGFVNFANVDDAAKAVEALNGKNFDGKEWYVGKAQKKSERELELKG 290
Query: 215 -FPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGF 268
++ + +++ NL ++ + E ELF+ FGTITS ++ D + GF
Sbjct: 291 QHEQITKETVDKYHGTNLYIKNLDDSVGDEELMELFSEFGTITSCKVMRDPNGISRGSGF 350
Query: 269 IEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
+ F + + AT A+ MNG + KPL V L+ K
Sbjct: 351 VSFSIAEGATRALGEMNGKMVAGKPLYVALAQRK 384
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 76/262 (29%), Positives = 125/262 (47%), Gaps = 22/262 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L V++ L + F + + VR+ R+ +S G+ + F+ +A KA +
Sbjct: 26 LYVGDLHHDVNDPQLYDLFNQVAQVVSVRICRDVATQQSLGYGYVNFSNAHDAAKAIDVL 85
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N + K + I + P R VF+KNL + +D + L F FG
Sbjct: 86 NFTPLNGKIIRIMYSIRDPSARKSGAA---------NVFIKNLDKAIDHKALYDTFSAFG 136
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ D +G+SKG GF+QF S ++A+ AI ++NG +I FV G +
Sbjct: 137 NILSCKVATDASGQSKGHGFVQFESEESAQNAIDKLNGMLINDKQVFV-------GPFLR 189
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIE 270
+ + L + N +FV NL ++ ++ E +F +G ITS+ ++ D K GF+
Sbjct: 190 KQDRESALSGTKFNNVFVKNLLDSMTEADLERIFGEYGAITSAVVMRDVDGKSKGFGFVN 249
Query: 271 FIMPKHATHAVSTMNGHVFKSK 292
F A AV +NG F K
Sbjct: 250 FANVDDAAKAVEALNGKNFDGK 271
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 62/198 (31%), Positives = 98/198 (49%), Gaps = 15/198 (7%)
Query: 18 DDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGF 77
D E A S + N V+ V NL S+ L F ++G + V R+ + +S+GF
Sbjct: 192 DRESALSGTKFNNVF------VKNLLDSMTEADLERIFGEYGAITSAVVMRDVDGKSKGF 245
Query: 78 AIIVFNTPAEAKKARVEMNGHLIGSKPVII--------TFVELKPGQRSKPVGPEEKQYK 129
+ F +A KA +NG K + +ELK GQ + +Y
Sbjct: 246 GFVNFANVDDAAKAVEALNGKNFDGKEWYVGKAQKKSERELELK-GQHEQITKETVDKYH 304
Query: 130 KDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAII 189
+++KNL ++V +EEL F +FG I K++RD NG S+G GF+ F + A +A+
Sbjct: 305 GTNLYIKNLDDSVGDEELMELFSEFGTITSCKVMRDPNGISRGSGFVSFSIAEGATRALG 364
Query: 190 EMNGRMIQHNSTFVSLAE 207
EMNG+M+ +V+LA+
Sbjct: 365 EMNGKMVAGKPLYVALAQ 382
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 51/94 (54%)
Query: 26 KENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTP 85
KE Y L++ NL+ SV ++ L+ F +FGT+ +V R+ N SRG + F+
Sbjct: 297 KETVDKYHGTNLYIKNLDDSVGDEELMELFSEFGTITSCKVMRDPNGISRGSGFVSFSIA 356
Query: 86 AEAKKARVEMNGHLIGSKPVIITFVELKPGQRSK 119
A +A EMNG ++ KP+ + + K +R++
Sbjct: 357 EGATRALGEMNGKMVAGKPLYVALAQRKEDRRAR 390
>gi|256075089|ref|XP_002573853.1| polyadenylate binding protein [Schistosoma mansoni]
gi|360044950|emb|CCD82498.1| putative polyadenylate binding protein [Schistosoma mansoni]
Length = 688
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 85/277 (30%), Positives = 140/277 (50%), Gaps = 28/277 (10%)
Query: 35 NELHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKKARV 93
+ L+V +L P V + AL +F + G + RV R+ S G+ + F P A++A
Sbjct: 13 SSLYVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRHSLGYGYVNFEDPKHAEQALE 72
Query: 94 EMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIK 153
+N + +P+ I + + P R K +F+KNL ++++++EL F
Sbjct: 73 VLNYESLMGRPIRIMWSQRDPSLRKS---------GKGNIFIKNLDKSIEQKELYDTFSF 123
Query: 154 FGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKK 213
FG I+ KIV DENG+SKG+GF+ F + AE+AI ++N +I+ +V K
Sbjct: 124 FGRILSCKIVMDENGQSKGYGFVHFEKEECAERAIEKINNMIIRDRVVYVG--------K 175
Query: 214 VFPKVKPPLLQPARK---NKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KH 265
PK + ARK N +++ N P +N + +E+F FG I S+ ++ D K
Sbjct: 176 FIPKTE--RKSQARKVKFNNLYIKNFPPETDNEKLKEMFNEFGEIKSACVMKDSEGKSKG 233
Query: 266 IGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ F+ P HA +AV TM+G + + L + K
Sbjct: 234 FGFVCFLDPDHAENAVKTMHGKEIEGRALYCARAQRK 270
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 79/275 (28%), Positives = 144/275 (52%), Gaps = 16/275 (5%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S++ + L + F FG + ++ ++N +S+G+ + F A++A ++N
Sbjct: 105 IKNLDKSIEQKELYDTFSFFGRILSCKIVMDENGQSKGYGFVHFEKEECAERAIEKINNM 164
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
+I + V + K ++S + ++ K + +++KN D E+LK F +FG I
Sbjct: 165 IIRDRVVYVGKFIPKTERKS-----QARKVKFNNLYIKNFPPETDNEKLKEMFNEFGEIK 219
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKV 218
+++D GKSKGFGF+ F AE A+ M+G+ I+ + + + A+ ++ K
Sbjct: 220 SACVMKDSEGKSKGFGFVCFLDPDHAENAVKTMHGKEIEGRALYCARAQRKEERQEELKQ 279
Query: 219 KPPLLQPARKNK------IFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIG 267
+ + R++ ++V NL NI++ EE F+ G+ITS+ ++ D K G
Sbjct: 280 RLEKQRAERQSSYMLNVNLYVKNLDDNIDDKRLEEAFSVHGSITSAKVMKDANNRSKGFG 339
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F+ F P+ A AV+ MNG + SKPL V L+ K
Sbjct: 340 FVCFANPEQAARAVTDMNGTIIGSKPLYVALAQRK 374
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 99/190 (52%), Gaps = 8/190 (4%)
Query: 26 KENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTP 85
K + K N L++ N P DN+ L F +FG ++ V ++ +S+GF + F P
Sbjct: 183 KSQARKVKFNNLYIKNFPPETDNEKLKEMFNEFGEIKSACVMKDSEGKSKGFGFVCFLDP 242
Query: 86 AEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDK--------VFVKN 137
A+ A M+G I + + + K ++ + EKQ + + ++VKN
Sbjct: 243 DHAENAVKTMHGKEIEGRALYCARAQRKEERQEELKQRLEKQRAERQSSYMLNVNLYVKN 302
Query: 138 LVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQ 197
L + +D++ L+ F G+I K+++D N +SKGFGF+ F + + A +A+ +MNG +I
Sbjct: 303 LDDNIDDKRLEEAFSVHGSITSAKVMKDANNRSKGFGFVCFANPEQAARAVTDMNGTIIG 362
Query: 198 HNSTFVSLAE 207
+V+LA+
Sbjct: 363 SKPLYVALAQ 372
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 71/123 (57%), Gaps = 1/123 (0%)
Query: 20 EGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAI 79
E R+ ++++ + N L+V NL+ ++D++ L F G++ +V ++ N+ S+GF
Sbjct: 282 EKQRAERQSSYMLNVN-LYVKNLDDNIDDKRLEEAFSVHGSITSAKVMKDANNRSKGFGF 340
Query: 80 IVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLV 139
+ F P +A +A +MNG +IGSKP+ + + K +R+K + +++ + + V +++
Sbjct: 341 VCFANPEQAARAVTDMNGTIIGSKPLYVALAQRKEDRRAKLIEEHQQRMAQYRNPVASMI 400
Query: 140 ETV 142
V
Sbjct: 401 PAV 403
Score = 40.8 bits (94), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 41/83 (49%), Gaps = 6/83 (7%)
Query: 229 NKIFVANLPSNINNSEFEELFARFGTITSSSLVSD---KH---IGFIEFIMPKHATHAVS 282
+ ++V +L +++S + F+ G + S+ + D +H G++ F PKHA A+
Sbjct: 13 SSLYVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRHSLGYGYVNFEDPKHAEQALE 72
Query: 283 TMNGHVFKSKPLKVTLSGTKPGV 305
+N +P+++ S P +
Sbjct: 73 VLNYESLMGRPIRIMWSQRDPSL 95
>gi|320032897|gb|EFW14847.1| polyadenylate-binding protein [Coccidioides posadasii str.
Silveira]
Length = 768
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 82/269 (30%), Positives = 130/269 (48%), Gaps = 25/269 (9%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+PSV L F G + +RV R+ S G+A + +N A+ ++A ++
Sbjct: 57 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 116
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI +P I + + P R G VF+KNL +D + L F FG
Sbjct: 117 NYTLIKGRPCRIMWSQRDPALRKTGQG---------NVFIKNLDTAIDNKALHDTFAAFG 167
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ +DE G SKG+GF+ + + +AA+ AI +NG ++ FV G +
Sbjct: 168 NILSCKVAQDEFGNSKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFV-------GHHIA 220
Query: 216 PKVKPPLLQPARKN--KIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIG 267
K + + + N ++V N+ + EF +LF +FG ITS++L D + G
Sbjct: 221 KKDRQSKFEEMKANFTNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFG 280
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
F+ F +A AV +N FK + L V
Sbjct: 281 FVNFTSHDNAAAAVEALNDKDFKGQKLYV 309
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 69/231 (29%), Positives = 126/231 (54%), Gaps = 9/231 (3%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ ++DN+AL + F FG + +VA+++ S+G+ + + T A+ A +NG
Sbjct: 147 IKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAAQNAIKHVNGM 206
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ K V + K ++SK EE + V+VKN+ + EEE + F KFG I
Sbjct: 207 LLNDKKVFVGHHIAKKDRQSK---FEEMKANFTNVYVKNIDQDTTEEEFRDLFEKFGEIT 263
Query: 159 EVKIVRD-ENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGK--KVF 215
+ RD E+GKS+GFGF+ F S+ A A+ +N + + +V A+ + ++
Sbjct: 264 SATLARDAESGKSRGFGFVNFTSHDNAAAAVEALNDKDFKGQKLYVGRAQKKHEREEELR 323
Query: 216 PKVKPPLLQPARKNK---IFVANLPSNINNSEFEELFARFGTITSSSLVSD 263
+ + ++ A K + +++ NL +I++ + ELF+ +GTITS+ ++ D
Sbjct: 324 KQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLRELFSSYGTITSAKVMRD 374
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 56/236 (23%), Positives = 98/236 (41%), Gaps = 69/236 (29%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKKARVEM 95
++V N++ + + F+KFG + +AR+ ++ +SRGF + F + A A +
Sbjct: 238 VYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAVEAL 297
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKV-----------FVKNLVETVDE 144
N + + + + K +R + + KQY+ ++ ++KNL + +D+
Sbjct: 298 NDKDFKGQKLYVGRAQKKH-EREEEL---RKQYEAARIEKASKYQGVNLYIKNLSDDIDD 353
Query: 145 EELKSHFIKFGNIIEVKIVRD--------------------------------------- 165
E+L+ F +G I K++RD
Sbjct: 354 EKLRELFSSYGTITSAKVMRDFAPESTSDSEKEAKKDSKEPETKEEEPKDEAGDNAENKD 413
Query: 166 --EN------------GKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
EN GKSKGFGF+ F S A KA+ EMN RM+ +V+LA+
Sbjct: 414 NKENKAESKKSEKKPLGKSKGFGFVCFSSPDEASKAVTEMNQRMVHGKPLYVALAQ 469
Score = 41.2 bits (95), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 28/46 (60%)
Query: 74 SRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSK 119
S+GF + F++P EA KA EMN ++ KP+ + + K +RS+
Sbjct: 432 SKGFGFVCFSSPDEASKAVTEMNQRMVHGKPLYVALAQRKDVRRSQ 477
>gi|357437769|ref|XP_003589160.1| Polyadenylate-binding protein [Medicago truncatula]
gi|355478208|gb|AES59411.1| Polyadenylate-binding protein [Medicago truncatula]
Length = 647
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 89/308 (28%), Positives = 160/308 (51%), Gaps = 31/308 (10%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ ++D++AL + F FG + ++A + + +S+G+ + F A+ A ++N
Sbjct: 122 IFIKNLDKTIDHKALHDTFSSFGQIMSCKIATDGSGQSKGYGFVQFEAEDSAQNAIDKLN 181
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G LI K V + L+ R + + K + V+VKNL E+ E++LK+ F +G
Sbjct: 182 GMLINDKQVFVGHF-LRKQDRDNVL----SKTKFNNVYVKNLSESFTEDDLKNEFGAYGT 236
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFP 216
I ++RD +G+SK FGF+ F + + A KA+ +NG+ + +V A+ ++
Sbjct: 237 ITSAVLMRDADGRSKCFGFVNFENAEDAAKAVEALNGKKVDDKEWYVGKAQKKSEREQEL 296
Query: 217 K------VKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KH 265
K VK ++ + +++ NL +I + + +E+F+ FGTITS ++ D +
Sbjct: 297 KGRFEQTVKESVVDKFQGLNLYLKNLDDSITDEKLKEMFSEFGTITSYKIMRDPNGVSRG 356
Query: 266 IGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKPG--------------VSITNPT 311
GF+ F P+ A+ A+ MNG + SKPL V ++ K V+IT P+
Sbjct: 357 SGFVAFSTPEEASRALGEMNGKMIVSKPLYVAVAQRKEDRRARLQAQFSQMRPVAIT-PS 415
Query: 312 KAPKKPAY 319
AP+ P Y
Sbjct: 416 VAPRMPLY 423
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 75/256 (29%), Positives = 126/256 (49%), Gaps = 22/256 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKKARVEM 95
L+V +LE +V++ L + F + G + VRV R+ S G+ + F P +A +A +
Sbjct: 34 LYVGDLEVNVNDSQLYDLFNQVGQVVSVRVCRDLATRRSLGYGYVNFTNPQDAARALDVL 93
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N + +K + + + P R +F+KNL +T+D + L F FG
Sbjct: 94 NFTPMNNKSIRVMYSHRDPSSRKSGTA---------NIFIKNLDKTIDHKALHDTFSSFG 144
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
I+ KI D +G+SKG+GF+QF + +A+ AI ++NG +I FV G +
Sbjct: 145 QIMSCKIATDGSGQSKGYGFVQFEAEDSAQNAIDKLNGMLINDKQVFV-------GHFLR 197
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIE 270
+ + +L + N ++V NL + + + F +GTITS+ L+ D K GF+
Sbjct: 198 KQDRDNVLSKTKFNNVYVKNLSESFTEDDLKNEFGAYGTITSAVLMRDADGRSKCFGFVN 257
Query: 271 FIMPKHATHAVSTMNG 286
F + A AV +NG
Sbjct: 258 FENAEDAAKAVEALNG 273
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 98/183 (53%), Gaps = 8/183 (4%)
Query: 33 KENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKAR 92
K N ++V NL S L NEF +GT+ + R+ + S+ F + F +A KA
Sbjct: 209 KFNNVYVKNLSESFTEDDLKNEFGAYGTITSAVLMRDADGRSKCFGFVNFENAEDAAKAV 268
Query: 93 VEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKK---DK-----VFVKNLVETVDE 144
+NG + K + + K + + G E+ K+ DK +++KNL +++ +
Sbjct: 269 EALNGKKVDDKEWYVGKAQKKSEREQELKGRFEQTVKESVVDKFQGLNLYLKNLDDSITD 328
Query: 145 EELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVS 204
E+LK F +FG I KI+RD NG S+G GF+ F + + A +A+ EMNG+MI +V+
Sbjct: 329 EKLKEMFSEFGTITSYKIMRDPNGVSRGSGFVAFSTPEEASRALGEMNGKMIVSKPLYVA 388
Query: 205 LAE 207
+A+
Sbjct: 389 VAQ 391
>gi|351705901|gb|EHB08820.1| Polyadenylate-binding protein 5 [Heterocephalus glaber]
Length = 382
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 85/272 (31%), Positives = 156/272 (57%), Gaps = 12/272 (4%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S+DN+ L F FG + +V + N S+G+A + F++ A A +A MN
Sbjct: 108 IFIKNLDKSIDNRGLFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMN 166
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G + ++ V + + P +R+ V ++ + VFVKNL + +++E+LK F ++G
Sbjct: 167 GVRLNNRQVYVGRFKF-PEERAAEVRTRDRATFTN-VFVKNLGDDMNDEKLKELFSEYGQ 224
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFP 216
I VK+VRD +GKSKGFGF+++ +++AA+KA++E++G+ + +V A+ +
Sbjct: 225 IESVKVVRDASGKSKGFGFVKYETHEAAQKAVLELHGKSMDGKVLYVGRAQKKIERLAEL 284
Query: 217 KVKPPLLQPARKNK-----IFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIG 267
+ + L+ K++ I++ NL +I++ + +E F+ FG+I+ + ++ + K G
Sbjct: 285 RRRFERLRLKEKSRPPGVPIYIKNLDESIDDEKLKEEFSSFGSISRAKVMMEVGQGKGFG 344
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299
+ F + AT AV MNG + SK L VTL
Sbjct: 345 VVCFSSFEEATKAVDEMNGRLVGSKALHVTLG 376
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 82/267 (30%), Positives = 130/267 (48%), Gaps = 26/267 (9%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDES-RGFAIIVFNTPAEAKKARVEMNG 97
V +L+ V L +F+ G LR R+ R+ S G+ + F PA+A+ A MN
Sbjct: 22 VGDLDADVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 98 HLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNI 157
LI KP + + + R VG +F+KNL +++D L F FGNI
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVG---------NIFIKNLDKSIDNRGLFYLFSAFGNI 132
Query: 158 IEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPK 217
+ K+V D+NG SKG+ ++ F S AA +AI MNG + + +V G+ FP+
Sbjct: 133 LSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYV-------GRFKFPE 184
Query: 218 VKPPLLQP---ARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFI 269
+ ++ A +FV NL ++N+ + +ELF+ +G I S +V D K GF+
Sbjct: 185 ERAAEVRTRDRATFTNVFVKNLGDDMNDEKLKELFSEYGQIESVKVVRDASGKSKGFGFV 244
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKV 296
++ + A AV ++G K L V
Sbjct: 245 KYETHEAAQKAVLELHGKSMDGKVLYV 271
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 103/179 (57%), Gaps = 8/179 (4%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ V NL ++++ L F ++G + V+V R+ + +S+GF + + T A+KA +E++
Sbjct: 201 VFVKNLGDDMNDEKLKELFSEYGQIESVKVVRDASGKSKGFGFVKYETHEAAQKAVLELH 260
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDK-------VFVKNLVETVDEEELKS 149
G + K + + + K + ++ E+ K+K +++KNL E++D+E+LK
Sbjct: 261 GKSMDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDESIDDEKLKE 320
Query: 150 HFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEI 208
F FG+I K++ E G+ KGFG + F S++ A KA+ EMNGR++ + V+L ++
Sbjct: 321 EFSSFGSISRAKVMM-EVGQGKGFGVVCFSSFEEATKAVDEMNGRLVGSKALHVTLGQV 378
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+++ NL+ S+D++ L EF FG++ +V + +GF ++ F++ EA KA EMN
Sbjct: 304 IYIKNLDESIDDEKLKEEFSSFGSISRAKVMMEVG-QGKGFGVVCFSSFEEATKAVDEMN 362
Query: 97 GHLIGSKPVIITFVELK 113
G L+GSK + +T +++
Sbjct: 363 GRLVGSKALHVTLGQVR 379
>gi|303322729|ref|XP_003071356.1| Poly-binding protein FabM, putative [Coccidioides posadasii C735
delta SOWgp]
gi|240111058|gb|EER29211.1| Poly-binding protein FabM, putative [Coccidioides posadasii C735
delta SOWgp]
Length = 768
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 82/269 (30%), Positives = 130/269 (48%), Gaps = 25/269 (9%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+PSV L F G + +RV R+ S G+A + +N A+ ++A ++
Sbjct: 57 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 116
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI +P I + + P R G VF+KNL +D + L F FG
Sbjct: 117 NYTLIKGRPCRIMWSQRDPALRKTGQG---------NVFIKNLDTAIDNKALHDTFAAFG 167
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ +DE G SKG+GF+ + + +AA+ AI +NG ++ FV G +
Sbjct: 168 NILSCKVAQDEFGNSKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFV-------GHHIA 220
Query: 216 PKVKPPLLQPARKN--KIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIG 267
K + + + N ++V N+ + EF +LF +FG ITS++L D + G
Sbjct: 221 KKDRQSKFEEMKANFTNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFG 280
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
F+ F +A AV +N FK + L V
Sbjct: 281 FVNFTSHDNAAAAVEALNDKDFKGQKLYV 309
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 69/231 (29%), Positives = 126/231 (54%), Gaps = 9/231 (3%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ ++DN+AL + F FG + +VA+++ S+G+ + + T A+ A +NG
Sbjct: 147 IKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAAQNAIKHVNGM 206
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ K V + K ++SK EE + V+VKN+ + EEE + F KFG I
Sbjct: 207 LLNDKKVFVGHHIAKKDRQSK---FEEMKANFTNVYVKNIDQDTTEEEFRDLFEKFGEIT 263
Query: 159 EVKIVRD-ENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGK--KVF 215
+ RD E+GKS+GFGF+ F S+ A A+ +N + + +V A+ + ++
Sbjct: 264 SATLARDAESGKSRGFGFVNFTSHDNAAAAVEALNDKDFKGQKLYVGRAQKKHEREEELR 323
Query: 216 PKVKPPLLQPARKNK---IFVANLPSNINNSEFEELFARFGTITSSSLVSD 263
+ + ++ A K + +++ NL +I++ + ELF+ +GTITS+ ++ D
Sbjct: 324 KQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLRELFSSYGTITSAKVMRD 374
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 56/236 (23%), Positives = 98/236 (41%), Gaps = 69/236 (29%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKKARVEM 95
++V N++ + + F+KFG + +AR+ ++ +SRGF + F + A A +
Sbjct: 238 VYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAVEAL 297
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKV-----------FVKNLVETVDE 144
N + + + + K +R + + KQY+ ++ ++KNL + +D+
Sbjct: 298 NDKDFKGQKLYVGRAQKKH-EREEEL---RKQYEAARIEKASKYQGVNLYIKNLSDDIDD 353
Query: 145 EELKSHFIKFGNIIEVKIVRD--------------------------------------- 165
E+L+ F +G I K++RD
Sbjct: 354 EKLRELFSSYGTITSAKVMRDFAPESTSDSEKEAKKDSKEPETKEEEPKDEAGDNAENKD 413
Query: 166 --EN------------GKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
EN GKSKGFGF+ F S A KA+ EMN RM+ +V+LA+
Sbjct: 414 NKENKAESKKSEKKPLGKSKGFGFVCFSSPDEASKAVTEMNQRMVHGKPLYVALAQ 469
Score = 41.2 bits (95), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 28/46 (60%)
Query: 74 SRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSK 119
S+GF + F++P EA KA EMN ++ KP+ + + K +RS+
Sbjct: 432 SKGFGFVCFSSPDEASKAVTEMNQRMVHGKPLYVALAQRKDVRRSQ 477
>gi|317106693|dbj|BAJ53194.1| JHL03K20.3 [Jatropha curcas]
Length = 642
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 88/287 (30%), Positives = 149/287 (51%), Gaps = 37/287 (12%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+++ NL+ ++DN+AL + F FG + +VA + +S G+ + F+ AK A ++N
Sbjct: 119 IYIKNLDKAIDNKALHDTFSAFGNILSCKVATDSAGQSLGYGFVQFDNEESAKNAIDKLN 178
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGP----EEKQYKKDK-----VFVKNLVETVDEEEL 147
G L+ K V VGP +E++ DK V+VKNL ET EE+L
Sbjct: 179 GMLLNDKQVY--------------VGPFLRRQERESGTDKTKFNNVYVKNLSETTTEEDL 224
Query: 148 KSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
K F ++G I ++RD +GKS+ FGF+ F + A +++ +NG+ +V A+
Sbjct: 225 KKIFGEYGAITSAVVMRDGDGKSRCFGFVNFENPDDAARSVEALNGKTFDEKEWYVGKAQ 284
Query: 208 IVPGKKVFPKVKPPLLQPARKN-------KIFVANLPSNINNSEFEELFARFGTITSSSL 260
++V ++K Q ++ ++V NL +I + + +ELF+ FGTITS +
Sbjct: 285 KKSEREV--ELKGQFEQTLKETVDKFEGLNLYVKNLDDSITDDKLKELFSEFGTITSCKV 342
Query: 261 VSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
+ D K GF+ + + A+ A++ MNG + SKPL V L+ K
Sbjct: 343 MRDPNGVSKGSGFVAYSTAEEASKALTEMNGKMIVSKPLYVALAQRK 389
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 75/283 (26%), Positives = 132/283 (46%), Gaps = 24/283 (8%)
Query: 16 ISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDES 74
+S G SN N V L+V +LE +V L + F + G + +RV R+ + S
Sbjct: 12 VSAPVGMASNGGNQFV--STSLYVGDLEQNVTETQLYDLFNQLGQIVSIRVCRDLTSRRS 69
Query: 75 RGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVF 134
G+ + +N +A +A +N + KP+ I + P R G ++
Sbjct: 70 LGYGYVNYNNVHDAAQALEVLNFTPVNGKPIRIMYSYRDPTIRKSGAG---------NIY 120
Query: 135 VKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGR 194
+KNL + +D + L F FGNI+ K+ D G+S G+GF+QF + ++A+ AI ++NG
Sbjct: 121 IKNLDKAIDNKALHDTFSAFGNILSCKVATDSAGQSLGYGFVQFDNEESAKNAIDKLNGM 180
Query: 195 MIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGT 254
++ +V G + + + + N ++V NL + +++F +G
Sbjct: 181 LLNDKQVYV-------GPFLRRQERESGTDKTKFNNVYVKNLSETTTEEDLKKIFGEYGA 233
Query: 255 ITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSK 292
ITS+ ++ D + GF+ F P A +V +NG F K
Sbjct: 234 ITSAVVMRDGDGKSRCFGFVNFENPDDAARSVEALNGKTFDEK 276
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 98/183 (53%), Gaps = 9/183 (4%)
Query: 33 KENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKAR 92
K N ++V NL + + L F ++G + V R+ + +SR F + F P +A ++
Sbjct: 206 KFNNVYVKNLSETTTEEDLKKIFGEYGAITSAVVMRDGDGKSRCFGFVNFENPDDAARSV 265
Query: 93 VEMNGHLIGSKPVII--------TFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDE 144
+NG K + VELK GQ + + +++ ++VKNL +++ +
Sbjct: 266 EALNGKTFDEKEWYVGKAQKKSEREVELK-GQFEQTLKETVDKFEGLNLYVKNLDDSITD 324
Query: 145 EELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVS 204
++LK F +FG I K++RD NG SKG GF+ + + + A KA+ EMNG+MI +V+
Sbjct: 325 DKLKELFSEFGTITSCKVMRDPNGVSKGSGFVAYSTAEEASKALTEMNGKMIVSKPLYVA 384
Query: 205 LAE 207
LA+
Sbjct: 385 LAQ 387
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 49/83 (59%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L+V NL+ S+ + L F +FGT+ +V R+ N S+G + ++T EA KA EMN
Sbjct: 313 LYVKNLDDSITDDKLKELFSEFGTITSCKVMRDPNGVSKGSGFVAYSTAEEASKALTEMN 372
Query: 97 GHLIGSKPVIITFVELKPGQRSK 119
G +I SKP+ + + K +R++
Sbjct: 373 GKMIVSKPLYVALAQRKEERRAR 395
>gi|224062834|ref|XP_002300896.1| predicted protein [Populus trichocarpa]
gi|222842622|gb|EEE80169.1| predicted protein [Populus trichocarpa]
Length = 648
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 88/272 (32%), Positives = 142/272 (52%), Gaps = 17/272 (6%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ +DN+AL F FG + +VA + N +S+G+ I F +A+ A +NG
Sbjct: 125 IKNLDTKIDNKALYETFASFGPVLSCKVAVDNNGQSKGYGFIQFENEEDAQSAINRLNGM 184
Query: 99 LIGSKPVII-TFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNI 157
L+ + V + FV +R + G K V+VKNL ET +E+LK F +G I
Sbjct: 185 LVNDREVYVGPFVRRL--ERIEANGSP----KFTNVYVKNLSETTSDEDLKKIFSSYGAI 238
Query: 158 IEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPK 217
+++D+NGKS+GFGF+ F S +A A+ ++NG +V A+ ++ K
Sbjct: 239 TSAIVMKDQNGKSRGFGFVNFQSPDSAAAAVEKLNGMTFSDKVWYVGRAQRKGEREAELK 298
Query: 218 VKPPLLQPARKNK-----IFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIG 267
K + +R K +++ NL I+ +ELF+ FG+ITS ++ D K G
Sbjct: 299 AKFEQERNSRYEKMKAANLYLKNLGDTIDEERLKELFSEFGSITSCKVMLDQQGLSKGSG 358
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299
F+ F P+ A+ A+S MNG + KPL V ++
Sbjct: 359 FVAFSTPEEASRALSEMNGKMIGKKPLYVAIA 390
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 74/267 (27%), Positives = 128/267 (47%), Gaps = 22/267 (8%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKND-ESRGFAIIVFNTPAEAKK 90
+ L+V +LE +V L + F + + RV R++ S G+A + F+ P +A K
Sbjct: 30 FPNRSLYVGDLEHNVKEGQLFDLFSQVAPVVSTRVCRDQAGLTSLGYAYVNFSNPQDAAK 89
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A +N + KP+ I F P R + VF+KNL +D + L
Sbjct: 90 AMEVLNFTPLNGKPIRIMFSHRDPTTR---------RSGHANVFIKNLDTKIDNKALYET 140
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVP 210
F FG ++ K+ D NG+SKG+GFIQF + + A+ AI +NG ++ +V P
Sbjct: 141 FASFGPVLSCKVAVDNNGQSKGYGFIQFENEEDAQSAINRLNGMLVNDREVYVG-----P 195
Query: 211 GKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKH----- 265
+ +++ + ++V NL ++ + +++F+ +G ITS+ ++ D++
Sbjct: 196 FVRRLERIEAN--GSPKFTNVYVKNLSETTSDEDLKKIFSSYGAITSAIVMKDQNGKSRG 253
Query: 266 IGFIEFIMPKHATHAVSTMNGHVFKSK 292
GF+ F P A AV +NG F K
Sbjct: 254 FGFVNFQSPDSAAAAVEKLNGMTFSDK 280
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/189 (32%), Positives = 103/189 (54%), Gaps = 9/189 (4%)
Query: 27 ENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPA 86
E N K ++V NL + ++ L F +G + V +++N +SRGF + F +P
Sbjct: 204 EANGSPKFTNVYVKNLSETTSDEDLKKIFSSYGAITSAIVMKDQNGKSRGFGFVNFQSPD 263
Query: 87 EAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQ-----YKKDK---VFVKNL 138
A A ++NG K + + K G+R + + +Q Y+K K +++KNL
Sbjct: 264 SAAAAVEKLNGMTFSDKVWYVGRAQRK-GEREAELKAKFEQERNSRYEKMKAANLYLKNL 322
Query: 139 VETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQH 198
+T+DEE LK F +FG+I K++ D+ G SKG GF+ F + + A +A+ EMNG+MI
Sbjct: 323 GDTIDEERLKELFSEFGSITSCKVMLDQQGLSKGSGFVAFSTPEEASRALSEMNGKMIGK 382
Query: 199 NSTFVSLAE 207
+V++A+
Sbjct: 383 KPLYVAIAQ 391
>gi|119189891|ref|XP_001245552.1| hypothetical protein CIMG_04993 [Coccidioides immitis RS]
gi|121937111|sp|Q1DXH0.1|PABP_COCIM RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|392868454|gb|EAS34245.2| polyadenylate-binding protein, cytoplasmic and nuclear
[Coccidioides immitis RS]
Length = 768
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 82/269 (30%), Positives = 130/269 (48%), Gaps = 25/269 (9%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+PSV L F G + +RV R+ S G+A + +N A+ ++A ++
Sbjct: 57 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 116
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI +P I + + P R G VF+KNL +D + L F FG
Sbjct: 117 NYTLIKGRPCRIMWSQRDPALRKTGQG---------NVFIKNLDTAIDNKALHDTFAAFG 167
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ +DE G SKG+GF+ + + +AA+ AI +NG ++ FV G +
Sbjct: 168 NILSCKVAQDEFGNSKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFV-------GHHIA 220
Query: 216 PKVKPPLLQPARKN--KIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIG 267
K + + + N ++V N+ + EF +LF +FG ITS++L D + G
Sbjct: 221 KKDRQSKFEEMKANFTNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFG 280
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
F+ F +A AV +N FK + L V
Sbjct: 281 FVNFTSHDNAAAAVEALNDKDFKGQKLYV 309
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 69/231 (29%), Positives = 126/231 (54%), Gaps = 9/231 (3%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ ++DN+AL + F FG + +VA+++ S+G+ + + T A+ A +NG
Sbjct: 147 IKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAAQNAIKHVNGM 206
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ K V + K ++SK EE + V+VKN+ + EEE + F KFG I
Sbjct: 207 LLNDKKVFVGHHIAKKDRQSK---FEEMKANFTNVYVKNIDQDTTEEEFRDLFEKFGEIT 263
Query: 159 EVKIVRD-ENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGK--KVF 215
+ RD E+GKS+GFGF+ F S+ A A+ +N + + +V A+ + ++
Sbjct: 264 SATLARDAESGKSRGFGFVNFTSHDNAAAAVEALNDKDFKGQKLYVGRAQKKHEREEELR 323
Query: 216 PKVKPPLLQPARKNK---IFVANLPSNINNSEFEELFARFGTITSSSLVSD 263
+ + ++ A K + +++ NL +I++ + ELF+ +GTITS+ ++ D
Sbjct: 324 KQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLRELFSSYGTITSAKVMRD 374
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 56/236 (23%), Positives = 98/236 (41%), Gaps = 69/236 (29%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKKARVEM 95
++V N++ + + F+KFG + +AR+ ++ +SRGF + F + A A +
Sbjct: 238 VYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAVEAL 297
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKV-----------FVKNLVETVDE 144
N + + + + K +R + + KQY+ ++ ++KNL + +D+
Sbjct: 298 NDKDFKGQKLYVGRAQKKH-EREEEL---RKQYEAARIEKASKYQGVNLYIKNLSDDIDD 353
Query: 145 EELKSHFIKFGNIIEVKIVRD--------------------------------------- 165
E+L+ F +G I K++RD
Sbjct: 354 EKLRELFSSYGTITSAKVMRDFAPESTSDSEKEAKKDSKEPETKEEEPKDEAGDNAENKD 413
Query: 166 --EN------------GKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
EN GKSKGFGF+ F S A KA+ EMN RM+ +V+LA+
Sbjct: 414 NKENKAESKKSEKKPLGKSKGFGFVCFSSPDEASKAVTEMNQRMVHGKPLYVALAQ 469
Score = 41.2 bits (95), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 28/46 (60%)
Query: 74 SRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSK 119
S+GF + F++P EA KA EMN ++ KP+ + + K +RS+
Sbjct: 432 SKGFGFVCFSSPDEASKAVTEMNQRMVHGKPLYVALAQRKDVRRSQ 477
>gi|366987097|ref|XP_003673315.1| hypothetical protein NCAS_0A03680 [Naumovozyma castellii CBS 4309]
gi|342299178|emb|CCC66926.1| hypothetical protein NCAS_0A03680 [Naumovozyma castellii CBS 4309]
Length = 575
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 92/310 (29%), Positives = 155/310 (50%), Gaps = 25/310 (8%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KG++ W + D R N + + NL P +DN+AL F FG +
Sbjct: 102 KGRLCRIMWSQ---RDPALRKKGSGN-------IFIKNLHPDIDNKALFETFSVFGNILS 151
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
++A ++ +S+GF + F + AK+A +NG L+ + + + L +R +
Sbjct: 152 SKIATDETGKSKGFGFVHFEHESSAKEAIDALNGMLLNGQEIYVA-PHLTRKERDSQL-- 208
Query: 124 EEKQYKKDKVFVKNL-VETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYK 182
EE + V+VKN+ +ET DEE F K+GN++ + + E+GK KGFGF+ F ++
Sbjct: 209 EETKAHFTNVYVKNINLETTDEE-FNELFAKYGNVLSSSLEKTEDGKLKGFGFVDFEKHE 267
Query: 183 AAEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLP 237
A KA+ E+NG + + FVS A+ + KK + + + + +FV NL
Sbjct: 268 DAAKAVEELNGTEFKDQTLFVSRAQKKYERMQELKKQYEASRLEKMAKYQGVNLFVKNLD 327
Query: 238 SNINNSEFEELFARFGTITSSSLVS-----DKHIGFIEFIMPKHATHAVSTMNGHVFKSK 292
+I++ + +E FA +GTITS ++ K GF+ F P+ AT A++ N + K
Sbjct: 328 DSIDDEKLKEEFAPYGTITSVRVMRTDNGKSKGFGFVCFSTPEEATKAITEKNQQIVAGK 387
Query: 293 PLKVTLSGTK 302
PL V ++ K
Sbjct: 388 PLYVAIAQRK 397
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 87/282 (30%), Positives = 135/282 (47%), Gaps = 40/282 (14%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+P+V L + F G++ +RV R+ S G+A + FN KKA ++
Sbjct: 37 LYVGELDPTVSEALLYDIFSPIGSVSSIRVCRDAVTKTSLGYAYVNFNDHEAGKKAIEQL 96
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N I + I + + P R K G +F+KNL +D + L F FG
Sbjct: 97 NYTPIKGRLCRIMWSQRDPALRKKGSG---------NIFIKNLHPDIDNKALFETFSVFG 147
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ KI DE GKSKGFGF+ F +A++AI +NG ++ G++++
Sbjct: 148 NILSSKIATDETGKSKGFGFVHFEHESSAKEAIDALNGMLLN-------------GQEIY 194
Query: 216 PKVKPPLLQPARKNK----------IFVANLPSNINNSEFEELFARFGTITSSSLVSD-- 263
V P L + R ++ ++V N+ + EF ELFA++G + SSSL
Sbjct: 195 --VAPHLTRKERDSQLEETKAHFTNVYVKNINLETTDEEFNELFAKYGNVLSSSLEKTED 252
Query: 264 ---KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
K GF++F + A AV +NG FK + L V+ + K
Sbjct: 253 GKLKGFGFVDFEKHEDAAKAVEELNGTEFKDQTLFVSRAQKK 294
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 52/88 (59%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L V NL+ S+D++ L EF +GT+ VRV R N +S+GF + F+TP EA KA
Sbjct: 316 YQGVNLFVKNLDDSIDDEKLKEEFAPYGTITSVRVMRTDNGKSKGFGFVCFSTPEEATKA 375
Query: 92 RVEMNGHLIGSKPVIITFVELKPGQRSK 119
E N ++ KP+ + + K +RS+
Sbjct: 376 ITEKNQQIVAGKPLYVAIAQRKDVRRSQ 403
>gi|320581683|gb|EFW95902.1| Poly(A) binding protein [Ogataea parapolymorpha DL-1]
Length = 629
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 92/309 (29%), Positives = 152/309 (49%), Gaps = 23/309 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK W + D R N N + + NL P++DN+ L + F FG +
Sbjct: 114 KGKACRIMWSQ---RDPSLRRNGSGN-------IFIKNLHPAIDNKTLHDTFSAFGKILS 163
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
++A ++N S+GF + + AK A +NG L+ V + K ++SK
Sbjct: 164 CKIATDENGNSKGFGFVHYEESESAKAAIENVNGMLLNDHEVYVGPHLAKKDRQSKM--- 220
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
E V+VKN+ DE++L+ F FG I + + +DE+GKS+GFGF+ F ++
Sbjct: 221 RELIANFTNVYVKNINLNWDEDKLRETFSPFGTISSIFLSKDESGKSRGFGFVNFEKHED 280
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A KA+ E+N + I +V A+ + K + + L + +FV NL
Sbjct: 281 AVKAVEELNNKDIDGQKLYVGRAQKKSERMESLKHQYEAARQEQLNKYQGYNLFVKNLDD 340
Query: 239 NINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKP 293
+I++++ EE F +GTITS+ ++ D K GF+ + P+ AT A++ M+ + KP
Sbjct: 341 SIDDAKLEEEFKPYGTITSAKVMLDDAGKSKGFGFVCYSSPEEATKAITEMHQRMVAGKP 400
Query: 294 LKVTLSGTK 302
L V L+ K
Sbjct: 401 LYVALAQRK 409
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 80/276 (28%), Positives = 125/276 (45%), Gaps = 40/276 (14%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+PSV L F G + +RV R+ + +S G+A + F + A+ +KA E+
Sbjct: 49 LYVGELDPSVTESDLFEVFSPIGQVSTIRVCRDAVSKQSLGYAYVNFQSHADGEKALEEL 108
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N I K I + + P R G +F+KNL +D + L F FG
Sbjct: 109 NYTPIKGKACRIMWSQRDPSLRRNGSG---------NIFIKNLHPAIDNKTLHDTFSAFG 159
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
I+ KI DENG SKGFGF+ + ++A+ AI +NG ++ + +V
Sbjct: 160 KILSCKIATDENGNSKGFGFVHYEESESAKAAIENVNGMLLNDHEVYVG----------- 208
Query: 216 PKVKPPLLQPARKNK----------IFVANLPSNINNSEFEELFARFGTITSSSLVSD-- 263
P L + R++K ++V N+ N + + E F+ FGTI+S L D
Sbjct: 209 ----PHLAKKDRQSKMRELIANFTNVYVKNINLNWDEDKLRETFSPFGTISSIFLSKDES 264
Query: 264 ---KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
+ GF+ F + A AV +N + L V
Sbjct: 265 GKSRGFGFVNFEKHEDAVKAVEELNNKDIDGQKLYV 300
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 56/100 (56%), Gaps = 2/100 (2%)
Query: 20 EGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAI 79
E AR + N Y+ L V NL+ S+D+ L EFK +GT+ +V + +S+GF
Sbjct: 318 EAARQEQLNK--YQGYNLFVKNLDDSIDDAKLEEEFKPYGTITSAKVMLDDAGKSKGFGF 375
Query: 80 IVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSK 119
+ +++P EA KA EM+ ++ KP+ + + K +RS+
Sbjct: 376 VCYSSPEEATKAITEMHQRMVAGKPLYVALAQRKEVRRSQ 415
>gi|158512764|sp|A2Q848.1|PABP_ASPNC RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|134054831|emb|CAK43671.1| unnamed protein product [Aspergillus niger]
Length = 731
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 84/268 (31%), Positives = 132/268 (49%), Gaps = 24/268 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+PSV L F G + +RV R+ S G+A + +N A+ ++A ++
Sbjct: 56 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 115
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI KP I + + P R G VF+KNL +D + L F FG
Sbjct: 116 NYTLIKGKPCRIMWSQRDPALRKTGQG---------NVFIKNLDSAIDNKALHDTFAAFG 166
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ +DE G SKG+GF+ + + +AA AI +NG ++ FV G +
Sbjct: 167 NILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFV-------GHHIS 219
Query: 216 PKVKPPLLQPARKN--KIFVANLPSNINNSEFEELFARFGTITSSSLVSDKH-----IGF 268
K + + + N +++ NL S I++ EF ++F +FG ITS++L D+ GF
Sbjct: 220 KKDRQSKFEEMKANFTNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQEGKSRGFGF 279
Query: 269 IEFIMPKHATHAVSTMNGHVFKSKPLKV 296
+ F + A AV MN +S+ L V
Sbjct: 280 VNFSTHESAQAAVEEMNDKEIRSQKLYV 307
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 78/268 (29%), Positives = 141/268 (52%), Gaps = 18/268 (6%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK W + D R + N + + NL+ ++DN+AL + F FG +
Sbjct: 121 KGKPCRIMWSQ---RDPALRKTGQGN-------VFIKNLDSAIDNKALHDTFAAFGNILS 170
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+VA+++ S+G+ + + T A A +NG L+ K V + K ++SK
Sbjct: 171 CKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKF--- 227
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
EE + V++KNL +D++E + F KFG I + RD+ GKS+GFGF+ F ++++
Sbjct: 228 EEMKANFTNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHES 287
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAEIVPGK--KVFPKVKPPLLQPARKNK---IFVANLPS 238
A+ A+ EMN + I+ +V A+ + ++ + + L+ A K + ++V NL
Sbjct: 288 AQAAVEEMNDKEIRSQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTD 347
Query: 239 NINNSEFEELFARFGTITSSSLVSDKHI 266
+I++ + ELF +GTITS+ ++ D ++
Sbjct: 348 DIDDEKLRELFGPYGTITSAKVMRDTNV 375
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/239 (25%), Positives = 103/239 (43%), Gaps = 72/239 (30%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+++ NL+ +D+ F+KFG + ++R++ +SRGF + F+T A+ A EMN
Sbjct: 237 VYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVEEMN 296
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKV-----------FVKNLVETVDEE 145
I S+ + + + K +R + + KQY+ ++ +VKNL + +D+E
Sbjct: 297 DKEIRSQKLYVGRAQKK-HEREEEL---RKQYEAARLEKASKYQGVNLYVKNLTDDIDDE 352
Query: 146 ELKSHFIKFGNIIEVKIV------RDEN-------------------------------- 167
+L+ F +G I K++ RD++
Sbjct: 353 KLRELFGPYGTITSAKVMRDTNVERDQSPDSAGKEKEADKENDKEATPEAEKAEKAEEKP 412
Query: 168 -------------------GKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
GKSKGFGF+ F S A KA+ EMN RM+ +V+LA+
Sbjct: 413 SESSEEKDKEAKKSDKKPFGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQ 471
Score = 41.2 bits (95), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 28/46 (60%)
Query: 74 SRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSK 119
S+GF + F++P EA KA EMN ++ KP+ + + K +RS+
Sbjct: 434 SKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQ 479
>gi|255731137|ref|XP_002550493.1| polyadenylate-binding protein [Candida tropicalis MYA-3404]
gi|240132450|gb|EER32008.1| polyadenylate-binding protein [Candida tropicalis MYA-3404]
Length = 633
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 93/309 (30%), Positives = 157/309 (50%), Gaps = 23/309 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
+G+ W + D AR + + N + + NL P++DN+AL + F FG +
Sbjct: 116 EGRPCRIMWSQ---RDPSARRSGDGN-------IFIKNLHPAIDNKALHDTFSAFGKILS 165
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+VA ++ +S+ F + + T A+ A +NG L+ + V FV ++ +
Sbjct: 166 CKVATDELGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREV---FVGKHISKKDRESKF 222
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
EE + ++VKN+ EEE + F +G I + + +D++GKSKGFGF+ F + A
Sbjct: 223 EEMKANFTNIYVKNIDLAYTEEEFEKLFAPYGKITSIYLEKDQDGKSKGFGFVNFEEHDA 282
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A KA+ E+N + I +V A+ + KK + ++ L + +FV NL
Sbjct: 283 AVKAVEELNDKEINGQKIYVGRAQKKRERMEELKKQYEAIRLEKLAKYQGVNLFVKNLDD 342
Query: 239 NINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKP 293
+I++ + EE F FGTITS+ ++ D K GF+ F P+ AT A++ MN + +KP
Sbjct: 343 SIDSEKLEEEFKPFGTITSAKVMVDDAGKSKGFGFVCFTTPEEATKAITEMNQRMVNNKP 402
Query: 294 LKVTLSGTK 302
L V L+ K
Sbjct: 403 LYVALAQRK 411
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 80/257 (31%), Positives = 121/257 (47%), Gaps = 24/257 (9%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L PSV+ L F G + +RV R+ + +S G+A + ++ + +KA E+
Sbjct: 51 LYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKFEDGEKAIEEL 110
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N I +P I + + P R G +F+KNL +D + L F FG
Sbjct: 111 NYTPIEGRPCRIMWSQRDPSARRSGDG---------NIFIKNLHPAIDNKALHDTFSAFG 161
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
I+ K+ DE G+SK FGF+ + + +AAE AI +NG ++ FV GK +
Sbjct: 162 KILSCKVATDELGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFV-------GKHIS 214
Query: 216 PKVKPPLLQPARKN--KIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGF 268
K + + + N I+V N+ EFE+LFA +G ITS L D K GF
Sbjct: 215 KKDRESKFEEMKANFTNIYVKNIDLAYTEEEFEKLFAPYGKITSIYLEKDQDGKSKGFGF 274
Query: 269 IEFIMPKHATHAVSTMN 285
+ F A AV +N
Sbjct: 275 VNFEEHDAAVKAVEELN 291
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 52/88 (59%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L V NL+ S+D++ L EFK FGT+ +V + +S+GF + F TP EA KA
Sbjct: 330 YQGVNLFVKNLDDSIDSEKLEEEFKPFGTITSAKVMVDDAGKSKGFGFVCFTTPEEATKA 389
Query: 92 RVEMNGHLIGSKPVIITFVELKPGQRSK 119
EMN ++ +KP+ + + K +RS+
Sbjct: 390 ITEMNQRMVNNKPLYVALAQRKDVRRSQ 417
>gi|402085655|gb|EJT80553.1| polyadenylate-binding protein [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 773
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 135/269 (50%), Gaps = 25/269 (9%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+PSV L F + G++ +RV R+ S G+A + +NT ++ +KA E+
Sbjct: 63 LYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTSDGEKALDEL 122
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI +P I + + P R G VF+KNL +D + L F FG
Sbjct: 123 NYTLIKGRPCRIMWSQRDPALRKTGQG---------NVFIKNLDVAIDNKALHDTFAAFG 173
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ +DE+G SKG+GF+ + + +AA +AI +NG ++ +V G +
Sbjct: 174 NILSCKVAQDEHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYV-------GHHIP 226
Query: 216 PKVKPPLLQPARKN--KIFVANLPSNINNSEFEELFARFGTITSSSLVSDKH------IG 267
K + + + N I+V N+ ++ + +F LF +FG +TSSSL D+ G
Sbjct: 227 KKDRQSKFEEMKANFTNIYVKNIQLDVTDDDFRALFEKFGHVTSSSLARDQETGKSRGFG 286
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
F+ F + A+ AV +N F + L V
Sbjct: 287 FVNFTSHEDASKAVEELNEKEFHGQNLYV 315
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 82/326 (25%), Positives = 150/326 (46%), Gaps = 63/326 (19%)
Query: 34 ENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARV 93
+ + + NL+ ++DN+AL + F FG + +VA++++ S+G+ + + T A +A
Sbjct: 148 QGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDEHGNSKGYGFVHYETDEAASQAIK 207
Query: 94 EMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIK 153
+NG L+ K V + K ++SK EE + ++VKN+ V +++ ++ F K
Sbjct: 208 HVNGMLLNEKKVYVGHHIPKKDRQSKF---EEMKANFTNIYVKNIQLDVTDDDFRALFEK 264
Query: 154 FGNIIEVKIVRD-ENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGK 212
FG++ + RD E GKS+GFGF+ F S++ A KA+ E+N + + +V A+ +
Sbjct: 265 FGHVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVEELNEKEFHGQNLYVGRAQKKHER 324
Query: 213 KVFPKVKPPLLQPARKNK--------IFVANLPSNINNSEFEELFARFGTITSSSLVSD- 263
+ + + AR+ K +++ NL +++ + +LF+ FG ITS+ ++ +
Sbjct: 325 EEELRRS---YEAARQEKASKYQGVNLYIKNLDDEVDDDKLRQLFSEFGPITSAKVMRET 381
Query: 264 -----------------------------------------------KHIGFIEFIMPKH 276
K GF+ F P
Sbjct: 382 LAEGADEPEAKDAADAKENVKEDEEAAKTEGDEGDAKADKKPKLGKSKGFGFVCFGNPDD 441
Query: 277 ATHAVSTMNGHVFKSKPLKVTLSGTK 302
AT AV+ MN + KPL V L+ K
Sbjct: 442 ATKAVAEMNQRMVNGKPLYVALAQRK 467
>gi|169853086|ref|XP_001833224.1| polyadenylate-binding protein [Coprinopsis cinerea okayama7#130]
gi|116505602|gb|EAU88497.1| polyadenylate-binding protein [Coprinopsis cinerea okayama7#130]
Length = 681
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 85/276 (30%), Positives = 146/276 (52%), Gaps = 13/276 (4%)
Query: 34 ENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARV 93
+ + + NL+ ++DN+AL + F FGT+ +VA ++ S+G+ + + T A+ A
Sbjct: 136 QGNIFIKNLDEAIDNKALHDTFAAFGTVLSCKVATDETGRSKGYGFVHYETAEAAENAIK 195
Query: 94 EMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIK 153
+NG L+ K V + + ++SK EE + + ++VKNL V ++E F K
Sbjct: 196 AVNGMLLNDKKVYVGHHISRKERQSK---LEEMRAQFTNLYVKNLDPEVTQDEFIELFKK 252
Query: 154 FGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPG-- 211
+GN+ I DE GKSKGFGF+ F ++ A+KA+ E+N ++ FVS A+
Sbjct: 253 YGNVTSAVISVDEEGKSKGFGFVNFETHDEAQKAVDELNDFELKGKKLFVSRAQKKAERE 312
Query: 212 ---KKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----- 263
++ + + K L + +++ NL ++++ + F FGTITS ++ D
Sbjct: 313 EELRRSYEQAKLEKLSKYQGVNLYIKNLEDDVDDDKLRAEFEPFGTITSCKVMRDEKGQS 372
Query: 264 KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299
K GF+ F P AT AV+ MN + +KPL V+L+
Sbjct: 373 KGFGFVCFSSPDEATKAVAEMNNKMIGTKPLYVSLA 408
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 79/269 (29%), Positives = 128/269 (47%), Gaps = 24/269 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+P+V L F G + +RV R+ S G+A + + A+ ++A ++
Sbjct: 51 LYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEQL 110
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI ++P I + + P R G +F+KNL E +D + L F FG
Sbjct: 111 NYSLIKNRPCRIMWSQRDPALRKTGQG---------NIFIKNLDEAIDNKALHDTFAAFG 161
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
++ K+ DE G+SKG+GF+ + + +AAE AI +NG ++ +V G +
Sbjct: 162 TVLSCKVATDETGRSKGYGFVHYETAEAAENAIKAVNGMLLNDKKVYV-------GHHIS 214
Query: 216 PKVKPPLLQPARKN--KIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGF 268
K + L+ R ++V NL + EF ELF ++G +TS+ + D K GF
Sbjct: 215 RKERQSKLEEMRAQFTNLYVKNLDPEVTQDEFIELFKKYGNVTSAVISVDEEGKSKGFGF 274
Query: 269 IEFIMPKHATHAVSTMNGHVFKSKPLKVT 297
+ F A AV +N K K L V+
Sbjct: 275 VNFETHDEAQKAVDELNDFELKGKKLFVS 303
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 63/179 (35%), Positives = 103/179 (57%), Gaps = 9/179 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L+V NL+P V I FKK+G + ++ ++ +S+GF + F T EA+KA E+N
Sbjct: 232 LYVKNLDPEVTQDEFIELFKKYGNVTSAVISVDEEGKSKGFGFVNFETHDEAQKAVDELN 291
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKV--------FVKNLVETVDEEELK 148
+ K + ++ + K +R + + +Q K +K+ ++KNL + VD+++L+
Sbjct: 292 DFELKGKKLFVSRAQ-KKAEREEELRRSYEQAKLEKLSKYQGVNLYIKNLEDDVDDDKLR 350
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
+ F FG I K++RDE G+SKGFGF+ F S A KA+ EMN +MI +VSLA+
Sbjct: 351 AEFEPFGTITSCKVMRDEKGQSKGFGFVCFSSPDEATKAVAEMNNKMIGTKPLYVSLAQ 409
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 55/88 (62%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L++ NLE VD+ L EF+ FGT+ +V R++ +S+GF + F++P EA KA
Sbjct: 330 YQGVNLYIKNLEDDVDDDKLRAEFEPFGTITSCKVMRDEKGQSKGFGFVCFSSPDEATKA 389
Query: 92 RVEMNGHLIGSKPVIITFVELKPGQRSK 119
EMN +IG+KP+ ++ + + +R +
Sbjct: 390 VAEMNNKMIGTKPLYVSLAQRREVRRQQ 417
>gi|157823445|ref|NP_001099899.1| polyadenylate-binding protein 4-like [Rattus norvegicus]
gi|149027259|gb|EDL82942.1| rCG37805 [Rattus norvegicus]
Length = 370
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 145/269 (53%), Gaps = 13/269 (4%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+DN+ L F FG + +V ++ + S+G+ + + A +A EMNG
Sbjct: 102 IKNLDKSIDNKTLYEHFSPFGKIMSSKVMTDE-EGSKGYGFVHYQDQRAADRAIEEMNGK 160
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ + FV ++ + EK + V++KN + +D+E L+S F K+G +
Sbjct: 161 LLRDSTL---FVARFKSRKDREAELREKPAEFTNVYIKNFGDDMDDESLRSVFSKYGQTL 217
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKK 213
VK+++D +GKSK FGF+ F S+KAA+ A+ +MNGR I + FV A+ K+
Sbjct: 218 SVKVMKDASGKSKRFGFVSFDSHKAAKNAVEDMNGRDINGQTIFVGRAQKKVERQAELKE 277
Query: 214 VFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGFI 269
+F ++K ++ + K+++ NL I++ + F+ FG+I ++ + K G I
Sbjct: 278 MFEQMKKERIRARQAAKLYIKNLDDTIDDETLRKEFSVFGSICRVKVMQEAGQSKGFGLI 337
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKVTL 298
F P+ A A++ MNG + SKPL + L
Sbjct: 338 CFFSPEAAAKAMAEMNGRILGSKPLNIAL 366
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 104/179 (58%), Gaps = 10/179 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+++ N +D+++L + F K+G V+V ++ + +S+ F + F++ AK A +MN
Sbjct: 192 VYIKNFGDDMDDESLRSVFSKYGQTLSVKVMKDASGKSKRFGFVSFDSHKAAKNAVEDMN 251
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKD--------KVFVKNLVETVDEEELK 148
G I + + + + K +R + +Q KK+ K+++KNL +T+D+E L+
Sbjct: 252 GRDINGQTIFVGRAQ-KKVERQAELKEMFEQMKKERIRARQAAKLYIKNLDDTIDDETLR 310
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
F FG+I VK+++ E G+SKGFG I FFS +AA KA+ EMNGR++ ++L +
Sbjct: 311 KEFSVFGSICRVKVMQ-EAGQSKGFGLICFFSPEAAAKAMAEMNGRILGSKPLNIALGQ 368
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 87/178 (48%), Gaps = 16/178 (8%)
Query: 125 EKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKA 183
E +Y+ ++V +L E V E+ L F G ++ ++I RD + +S G+G++ F
Sbjct: 4 ETKYRAASLYVGDLHEDVTEDLLFRKFNTVGPVLSIRICRDLISHRSLGYGYVNFLQVGD 63
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNS 243
A+KA+ MN +I+ S + ++ + L+ + +F+ NL +I+N
Sbjct: 64 AQKALETMNFDLIKGKSIRLMWSQ-----------RDACLRKSGIGNVFIKNLDKSIDNK 112
Query: 244 EFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVT 297
E F+ FG I SS +++D K GF+ + + A A+ MNG + + L V
Sbjct: 113 TLYEHFSPFGKIMSSKVMTDEEGSKGYGFVHYQDQRAADRAIEEMNGKLLRDSTLFVA 170
>gi|34015145|gb|AAQ56342.1| putative poly(A)-binding protein [Oryza sativa Japonica Group]
gi|125561054|gb|EAZ06502.1| hypothetical protein OsI_28747 [Oryza sativa Indica Group]
gi|125602953|gb|EAZ42278.1| hypothetical protein OsJ_26851 [Oryza sativa Japonica Group]
Length = 456
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 96/309 (31%), Positives = 158/309 (51%), Gaps = 33/309 (10%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S+DN+AL + F FG + +VA + ES+G+ + F A+ A ++N
Sbjct: 129 IFIKNLDKSIDNKALYDTFSVFGNILSCKVATEMSGESKGYGFVQFELEEAAQNAISKLN 188
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G L+ K V + K + + P K + V+VKNL E+ E+ LK F KFG
Sbjct: 189 GMLLNDKKVYVGPFVRKQERENVSGNP-----KFNNVYVKNLSESTTEDNLKEIFGKFGP 243
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFP 216
I V ++R+ +GKS+ FGF+ F + A +A+ ++NG+ +V A+ +++
Sbjct: 244 ITSVVVMREGDGKSRCFGFVNFENPDDAARAVEDLNGKKFDDKEWYVCRAQKKSEREMEL 303
Query: 217 KVK--PPLLQPARKNK---IFVANLPSNINNSE-FEELFARFGTITSSSLVSD-----KH 265
K K + + A KN+ +++ NL +I++ E +E+FA FGTITS ++ D K
Sbjct: 304 KEKFEKNIKEAADKNQGTNLYLKNLDDSIDDDEKLKEIFADFGTITSCKVMRDLNGVSKG 363
Query: 266 IGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTL---------------SGTKPGVSITNP 310
GF+ F + A+ A+ MNG + SKPL V L S +P + P
Sbjct: 364 SGFVAFKSAEDASRALVAMNGKMIGSKPLYVALAQRKEERRARLQAQFSQMRP--MVMPP 421
Query: 311 TKAPKKPAY 319
+ AP+ P Y
Sbjct: 422 SVAPRMPMY 430
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 80/273 (29%), Positives = 136/273 (49%), Gaps = 22/273 (8%)
Query: 31 VYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDE-SRGFAIIVFNTPAEAK 89
++ L+V +L+ SV + L + F + G++ VRV R+ N S G+A + F++PA+A
Sbjct: 35 TFQATSLYVGDLDVSVQDAQLFDVFSQVGSVVSVRVCRDVNTRLSLGYAYVNFSSPADAA 94
Query: 90 KARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKS 149
+A +N I KP+ I + P R +F+KNL +++D + L
Sbjct: 95 RALEMLNFTPINGKPIRIMYSNRDPSSRKSGAA---------NIFIKNLDKSIDNKALYD 145
Query: 150 HFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIV 209
F FGNI+ K+ + +G+SKG+GF+QF +AA+ AI ++NG ++ +V
Sbjct: 146 TFSVFGNILSCKVATEMSGESKGYGFVQFELEEAAQNAISKLNGMLLNDKKVYV------ 199
Query: 210 PGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----K 264
G V + + + + N ++V NL + +E+F +FG ITS ++ + +
Sbjct: 200 -GPFVRKQERENVSGNPKFNNVYVKNLSESTTEDNLKEIFGKFGPITSVVVMREGDGKSR 258
Query: 265 HIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVT 297
GF+ F P A AV +NG F K V
Sbjct: 259 CFGFVNFENPDDAARAVEDLNGKKFDDKEWYVC 291
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 66/207 (31%), Positives = 108/207 (52%), Gaps = 13/207 (6%)
Query: 33 KENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKAR 92
K N ++V NL S L F KFG + V V R + +SR F + F P +A +A
Sbjct: 216 KFNNVYVKNLSESTTEDNLKEIFGKFGPITSVVVMREGDGKSRCFGFVNFENPDDAARAV 275
Query: 93 VEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKK--DK-----VFVKNLVETVDEE 145
++NG K + + K + + EK K+ DK +++KNL +++D++
Sbjct: 276 EDLNGKKFDDKEWYVCRAQKKSEREMELKEKFEKNIKEAADKNQGTNLYLKNLDDSIDDD 335
Query: 146 E-LKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVS 204
E LK F FG I K++RD NG SKG GF+ F S + A +A++ MNG+MI +V+
Sbjct: 336 EKLKEIFADFGTITSCKVMRDLNGVSKGSGFVAFKSAEDASRALVAMNGKMIGSKPLYVA 395
Query: 205 LAEIVPGKKV-----FPKVKPPLLQPA 226
LA+ ++ F +++P ++ P+
Sbjct: 396 LAQRKEERRARLQAQFSQMRPMVMPPS 422
>gi|495594|gb|AAA70421.1| poly(A)-binding protein [Drosophila melanogaster]
Length = 632
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 90/276 (32%), Positives = 147/276 (53%), Gaps = 18/276 (6%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ ++DN+A+ + F FG + +VA ++ S+G+ + F T A + ++NG
Sbjct: 94 IKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGNSKGYGFVHFETEEAANTSIDKVNGM 153
Query: 99 LIGSKPVII-TFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNI 157
L+ K V + F+ K + +G + K + V+VKN E D+E+LK F +G I
Sbjct: 154 LLNGKKVYVGKFIPRK----EQELGEKAKLFTN--VYVKNFTEDFDDEKLKEFFEPYGKI 207
Query: 158 IEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGR-MIQHNSTFVSLAEIVPGKKVFP 216
K++ E+GKSKGFGF+ F + +AAE A+ +NG+ M + S +V+ A+ ++
Sbjct: 208 TSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQQEL 267
Query: 217 KVKPPLLQPARKNKIF-----VANLPSNINNSEFEELFARFGTITSSSLVSD-----KHI 266
K K L+ R +F V NL I++ F+ +G ITS+ +++D K
Sbjct: 268 KRKFEELKQKRHESVFGVNLYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDEEGRSKGF 327
Query: 267 GFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ F AT AV+ +NG V SKPL V L+ K
Sbjct: 328 GFVCFNPESEATCAVTELNGRVVGSKPLYVALAQRK 363
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 77/257 (29%), Positives = 128/257 (49%), Gaps = 24/257 (9%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L V+ L ++F G + +RV R+ S G+A + F PA+A++A M
Sbjct: 4 LYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTM 63
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N L+ +KP+ I + + P R VG VF+KNL +D + + F FG
Sbjct: 64 NFDLVRNKPIRIMWSQRDPSLRRSGVG---------NVFIKNLDRAIDNKAIYDTFSAFG 114
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ DE G SKG+GF+ F + +AA +I ++NG ++ +V K
Sbjct: 115 NILSCKVATDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVG--------KFI 166
Query: 216 PKVKPPLLQPARK-NKIFVANLPSNINNSEFEELFARFGTITSSSLVS-----DKHIGFI 269
P+ + L + A+ ++V N + ++ + +E F +G ITS ++S K GF+
Sbjct: 167 PRKEQELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFV 226
Query: 270 EFIMPKHATHAVSTMNG 286
F + A AV +NG
Sbjct: 227 AFETTEAAEAAVQALNG 243
Score = 94.0 bits (232), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 64/224 (28%), Positives = 107/224 (47%), Gaps = 21/224 (9%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
++V N D++ L F+ +G + +V ++ +S+GF + F T A+ A +N
Sbjct: 183 VYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALN 242
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVG---PEEKQYKKDKVF-----VKNLVETVDEEELK 148
G +G + K +R + + E KQ + + VF VKNL +T+D++ L+
Sbjct: 243 GKDMGEGKSLYVARAQKKAERQQELKRKFEELKQKRHESVFGVNLYVKNLDDTIDDDRLR 302
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEI 208
F +GNI K++ DE G+SKGFGF+ F A A+ E+NGR++ +V+LA+
Sbjct: 303 IAFSPYGNITSAKVMTDEEGRSKGFGFVCFNPESEATCAVTELNGRVVGSKPLYVALAQR 362
Query: 209 VPGKKVFPKVK-------------PPLLQPARKNKIFVANLPSN 239
+K + + QP + FV LPSN
Sbjct: 363 KEERKADLASQYMRHMTGMRMQQLGQIYQPNAASGFFVPTLPSN 406
Score = 42.4 bits (98), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 42/81 (51%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGF--IEFIMPKHATHAVSTM 284
++V +LP ++N S + F+ G + S + D + +G+ + F P A A+ TM
Sbjct: 4 LYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTM 63
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N + ++KP+++ S P +
Sbjct: 64 NFDLVRNKPIRIMWSQRDPSL 84
>gi|431899704|gb|ELK07658.1| Polyadenylate-binding protein 4-like protein [Pteropus alecto]
Length = 370
Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 83/271 (30%), Positives = 141/271 (52%), Gaps = 15/271 (5%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL S+DN+ L F FG + +V + + SRG+A + F + A +A MNG
Sbjct: 102 IKNLHKSIDNKTLYEHFSAFGKILSSKVMSD-DAGSRGYAFVHFQSQTAADRAIEAMNGA 160
Query: 99 LI-GSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNI 157
L+ G + + F ++ + + K + V++KN + +D+E LK F FG I
Sbjct: 161 LLKGCRLFVGPF----KNRKDRQAELQNKANEFTNVYIKNFGDDMDDERLKEIFSHFGKI 216
Query: 158 IEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPGK 212
+ VK++ D G+SKGFGF+ F S++AA++A+ MNG+ + FV A+ K
Sbjct: 217 LSVKVMTDSRGRSKGFGFVSFDSHEAAQRAVEIMNGKDLSGQPLFVGRAQKKAERQAELK 276
Query: 213 KVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGF 268
+F ++K + R K+++ NL +I++ F+ FG+I+ ++ + K G
Sbjct: 277 LMFEQMKQERYRRFRGVKLYIKNLDDSIDDERLRREFSSFGSISRVKVMKEEGRSKGFGL 336
Query: 269 IEFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299
I F P+ AT A+ MNG + SK L + L+
Sbjct: 337 ICFSSPEEATKAMVEMNGRILGSKSLNIALA 367
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 79/273 (28%), Positives = 132/273 (48%), Gaps = 25/273 (9%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y++ L+V +L V L +F G + +R+ R+ S G+A + F A+A+K
Sbjct: 7 YRQASLYVGDLHAEVTEDLLFKKFSAVGPVLSIRICRDLVTQRSLGYAYVNFLHLADAQK 66
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I K + + + + R +G VF+KNL +++D + L H
Sbjct: 67 ALDTMNFDMIKGKSIRLMWSQRDAYLRKSGIG---------NVFIKNLHKSIDNKTLYEH 117
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVP 210
F FG I+ K++ D+ G S+G+ F+ F S AA++AI MNG +++ FV P
Sbjct: 118 FSAFGKILSSKVMSDDAG-SRGYAFVHFQSQTAADRAIEAMNGALLKGCRLFVG-----P 171
Query: 211 GKKVFPKVKPPLLQPARK--NKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----- 263
K K + LQ +++ N ++++ +E+F+ FG I S +++D
Sbjct: 172 FKN--RKDRQAELQNKANEFTNVYIKNFGDDMDDERLKEIFSHFGKILSVKVMTDSRGRS 229
Query: 264 KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
K GF+ F + A AV MNG +PL V
Sbjct: 230 KGFGFVSFDSHEAAQRAVEIMNGKDLSGQPLFV 262
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 110/192 (57%), Gaps = 8/192 (4%)
Query: 23 RSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVF 82
R + NK + +++ N +D++ L F FG + V+V + S+GF + F
Sbjct: 178 RQAELQNKANEFTNVYIKNFGDDMDDERLKEIFSHFGKILSVKVMTDSRGRSKGFGFVSF 237
Query: 83 NTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRS--KPVGPEEKQ-----YKKDKVFV 135
++ A++A MNG + +P+ + + K +++ K + + KQ ++ K+++
Sbjct: 238 DSHEAAQRAVEIMNGKDLSGQPLFVGRAQKKAERQAELKLMFEQMKQERYRRFRGVKLYI 297
Query: 136 KNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRM 195
KNL +++D+E L+ F FG+I VK++++E G+SKGFG I F S + A KA++EMNGR+
Sbjct: 298 KNLDDSIDDERLRREFSSFGSISRVKVMKEE-GRSKGFGLICFSSPEEATKAMVEMNGRI 356
Query: 196 IQHNSTFVSLAE 207
+ S ++LA+
Sbjct: 357 LGSKSLNIALAQ 368
>gi|335775987|gb|AEH58755.1| polyadenylate-binding protein 1-like protein [Equus caballus]
Length = 510
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 83/248 (33%), Positives = 139/248 (56%), Gaps = 13/248 (5%)
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V R++N S+G+ + F T A++A +MNG L+ + V + + + +R +G
Sbjct: 2 CKVVRDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR-KEREAELGA 59
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
K++ V++KN E +D+E LK F KFG + VK++ DE+GKSKGFGF+ F ++
Sbjct: 60 RAKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 117
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A+KA+ EMNG+ + +V A+ K+ F ++K + + ++V NL
Sbjct: 118 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 177
Query: 239 NINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
I++ + F+ FGTITS+ ++ + K GF+ F P+ AT AV+ MNG + +KPL
Sbjct: 178 GIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 237
Query: 295 KVTLSGTK 302
V L+ K
Sbjct: 238 YVALAQRK 245
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 75/250 (30%), Positives = 125/250 (50%), Gaps = 36/250 (14%)
Query: 21 GARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAII 80
GAR+ KE VY + N +D++ L + F KFG V+V +++ +S+GF +
Sbjct: 58 GARA-KEFTNVY------IKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFV 110
Query: 81 VFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKV------- 133
F +A+KA EMNG + K + + + K +R + + +Q K+D++
Sbjct: 111 SFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK-VERQTELKRKFEQMKQDRITRYQGVN 169
Query: 134 -FVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMN 192
+VKNL + +D+E L+ F FG I K++ E G+SKGFGF+ F S + A KA+ EMN
Sbjct: 170 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMN 228
Query: 193 GRMIQHNSTFVSLAEIVPGKKVF-----------------PKVKPPLLQPARKNKIFVAN 235
GR++ +V+LA+ ++ P + P QPA + F+A
Sbjct: 229 GRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINP--YQPAPPSGYFMAA 286
Query: 236 LPSNINNSEF 245
+P N + +
Sbjct: 287 IPQTQNRAAY 296
>gi|168229272|ref|NP_001094949.1| poly(A) binding protein, cytoplasmic 4-like [Mus musculus]
gi|148703238|gb|EDL35185.1| mCG12357 [Mus musculus]
Length = 370
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 82/269 (30%), Positives = 145/269 (53%), Gaps = 13/269 (4%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+DN+ L F FGT+ +V + + S+G+ + + A +A EMNG
Sbjct: 102 IKNLDKSIDNKTLYEHFSPFGTIMSSKVMTD-GEGSKGYGFVHYQDRRAADRAIEEMNGK 160
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ + FV ++ + +K + V++KN + VD+E+L+ F K+G +
Sbjct: 161 LLRESTL---FVARFKSRKDREAELRDKPTEFTNVYIKNFGDDVDDEKLREVFSKYGQTL 217
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKK 213
VK+++D GKSKGFGF+ F S++AA+ A+ +MNG+ I + FV A+ K+
Sbjct: 218 SVKVMKDATGKSKGFGFVSFDSHEAAKNAVEDMNGQDINGQTIFVGRAQKKVERQAELKE 277
Query: 214 VFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGFI 269
+F ++K ++ + K+++ NL I++ + F+ FG+I ++ + K G I
Sbjct: 278 MFEQMKKERIRARQAAKLYIKNLDDTIDDETLRKEFSVFGSICRVKVMQEAGQSKGFGLI 337
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKVTL 298
F P+ A A++ MNG + SKPL + L
Sbjct: 338 CFFSPEAAAKAMAEMNGRILGSKPLNIAL 366
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/168 (35%), Positives = 98/168 (58%), Gaps = 10/168 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+++ N VD++ L F K+G V+V ++ +S+GF + F++ AK A +MN
Sbjct: 192 VYIKNFGDDVDDEKLREVFSKYGQTLSVKVMKDATGKSKGFGFVSFDSHEAAKNAVEDMN 251
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKD--------KVFVKNLVETVDEEELK 148
G I + + + + K +R + +Q KK+ K+++KNL +T+D+E L+
Sbjct: 252 GQDINGQTIFVGRAQ-KKVERQAELKEMFEQMKKERIRARQAAKLYIKNLDDTIDDETLR 310
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMI 196
F FG+I VK+++ E G+SKGFG I FFS +AA KA+ EMNGR++
Sbjct: 311 KEFSVFGSICRVKVMQ-EAGQSKGFGLICFFSPEAAAKAMAEMNGRIL 357
>gi|255555393|ref|XP_002518733.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223542114|gb|EEF43658.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 644
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 89/285 (31%), Positives = 149/285 (52%), Gaps = 33/285 (11%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ +D++AL + F FG + +VA + + +S+G+ + F+ A+KA ++N
Sbjct: 114 IFIKNLDKGIDHKALHDTFSAFGNILSCKVATDSSGQSKGYGFVQFDNEESAQKAIEKLN 173
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGP----EEKQYKKDK-----VFVKNLVETVDEEEL 147
G L+ K V VGP +E++ DK V+VKNL ET EE+L
Sbjct: 174 GMLLNDKQVY--------------VGPFLRKQERESAIDKTRFNNVYVKNLSETTTEEDL 219
Query: 148 KSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
K F ++G I ++RD +GK+K FGF+ F + A A+ +NG+ FV A+
Sbjct: 220 KKAFGEYGTITSAVVMRDGDGKTKCFGFVNFENADDAATAVEALNGKKFDDKEWFVGKAQ 279
Query: 208 IVPGKKVFPKVK--PPLLQPARKNK---IFVANLPSNINNSEFEELFARFGTITSSSLVS 262
++ KV+ + + A K + +++ NL +I + ++LF+ FGTITS ++
Sbjct: 280 KKNERENELKVRFEQSMKEAADKFQGANLYIKNLDDSIGDDRLKQLFSPFGTITSCKVMR 339
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
D + GF+ F P+ A+ A+ MNG + SKPL V L+ K
Sbjct: 340 DPNGISRGSGFVAFSTPEEASKALMEMNGKMVVSKPLYVALAQRK 384
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 79/279 (28%), Positives = 134/279 (48%), Gaps = 22/279 (7%)
Query: 20 EGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFA 78
+G N N Y L+V +LE +V + L + F + G + VRV R+ S G+
Sbjct: 9 QGQNVNGGANAPYVTTSLYVGDLEANVTDSHLYDLFNQVGQVVSVRVCRDLTTRRSLGYG 68
Query: 79 IIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNL 138
+ +++P +A +A +N + P+ I + P R G +F+KNL
Sbjct: 69 YVNYSSPQDAARALDMLNFTPLNGSPIRIMYSHRDPSVRKSGSG---------NIFIKNL 119
Query: 139 VETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQH 198
+ +D + L F FGNI+ K+ D +G+SKG+GF+QF + ++A+KAI ++NG ++
Sbjct: 120 DKGIDHKALHDTFSAFGNILSCKVATDSSGQSKGYGFVQFDNEESAQKAIEKLNGMLLND 179
Query: 199 NSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSS 258
+V G + + + + R N ++V NL + ++ F +GTITS+
Sbjct: 180 KQVYV-------GPFLRKQERESAIDKTRFNNVYVKNLSETTTEEDLKKAFGEYGTITSA 232
Query: 259 SLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSK 292
++ D K GF+ F A AV +NG F K
Sbjct: 233 VVMRDGDGKTKCFGFVNFENADDAATAVEALNGKKFDDK 271
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 103/205 (50%), Gaps = 14/205 (6%)
Query: 35 NELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVE 94
N ++V NL + + L F ++GT+ V R+ + +++ F + F +A A
Sbjct: 203 NNVYVKNLSETTTEEDLKKAFGEYGTITSAVVMRDGDGKTKCFGFVNFENADDAATAVEA 262
Query: 95 MNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDK--------VFVKNLVETVDEEE 146
+NG K + + K +R + +Q K+ +++KNL +++ ++
Sbjct: 263 LNGKKFDDKEWFVGKAQ-KKNERENELKVRFEQSMKEAADKFQGANLYIKNLDDSIGDDR 321
Query: 147 LKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLA 206
LK F FG I K++RD NG S+G GF+ F + + A KA++EMNG+M+ +V+LA
Sbjct: 322 LKQLFSPFGTITSCKVMRDPNGISRGSGFVAFSTPEEASKALMEMNGKMVVSKPLYVALA 381
Query: 207 EIVPGKKV-----FPKVKPPLLQPA 226
+ ++ F +++P + P+
Sbjct: 382 QRKEDRRARLQAQFSQIRPVAMAPS 406
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 56/97 (57%)
Query: 23 RSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVF 82
+S KE ++ L++ NL+ S+ + L F FGT+ +V R+ N SRG + F
Sbjct: 294 QSMKEAADKFQGANLYIKNLDDSIGDDRLKQLFSPFGTITSCKVMRDPNGISRGSGFVAF 353
Query: 83 NTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSK 119
+TP EA KA +EMNG ++ SKP+ + + K +R++
Sbjct: 354 STPEEASKALMEMNGKMVVSKPLYVALAQRKEDRRAR 390
>gi|356576101|ref|XP_003556172.1| PREDICTED: polyadenylate-binding protein 5-like isoform 1 [Glycine
max]
Length = 652
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 86/275 (31%), Positives = 148/275 (53%), Gaps = 16/275 (5%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+DN+AL + F FGT+ +VA + + +S+G+ + F+ A+ A +NG
Sbjct: 127 IKNLDTSIDNKALHDTFAAFGTVLSCKVALDSSGQSKGYGFVQFDNEEAAQNAIKRLNGM 186
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
LI K V + ++ +R + G K V+VKNL ET +E+LK F +G I
Sbjct: 187 LINDKQVYVGLF-IRRQEREQTNGSP----KFTNVYVKNLSETYTDEDLKKLFGPYGTIT 241
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNST-FVSLAEIVPGKKVFPK 217
+++D NGKS+ FGF+ F + +A A+ +NG I ++ +V A+ ++ K
Sbjct: 242 SATVMKDVNGKSRCFGFVNFQNPDSAAAAVERLNGTTINNDRVLYVGRAQRKAEREAELK 301
Query: 218 VKPPLLQPARKNKI-----FVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIG 267
K + +R K+ ++ NL + ++ + ++LF+ FGTITS ++ D K G
Sbjct: 302 AKIEQERISRYEKLQGANLYLKNLDDSFSDEKLKDLFSEFGTITSCKVMIDSNGRSKGSG 361
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F+ F P+ A+ A++ MNG + KPL V ++ K
Sbjct: 362 FVSFSTPEEASKALNEMNGKLIGRKPLYVAVAQRK 396
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 76/262 (29%), Positives = 125/262 (47%), Gaps = 34/262 (12%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESR-GFAIIVFNTPAEAKKARVEM 95
L+V +LE +V+ + L + F + + +RV R++ S G+A + F +A A +
Sbjct: 37 LYVGDLEGNVNEEQLYDLFSQVAQIASIRVCRDQTKRSSLGYAYVNFANAQDASNAMELL 96
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N + KP+ I F + P R G VF+KNL ++D + L F FG
Sbjct: 97 NFTPLNGKPIRIMFSQRDPSIRKSGHG---------NVFIKNLDTSIDNKALHDTFAAFG 147
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL------AEIV 209
++ K+ D +G+SKG+GF+QF + +AA+ AI +NG +I +V L E
Sbjct: 148 TVLSCKVALDSSGQSKGYGFVQFDNEEAAQNAIKRLNGMLINDKQVYVGLFIRRQEREQT 207
Query: 210 PGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----K 264
G F ++V NL + + ++LF +GTITS++++ D +
Sbjct: 208 NGSPKF-------------TNVYVKNLSETYTDEDLKKLFGPYGTITSATVMKDVNGKSR 254
Query: 265 HIGFIEFIMPKHATHAVSTMNG 286
GF+ F P A AV +NG
Sbjct: 255 CFGFVNFQNPDSAAAAVERLNG 276
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 100/190 (52%), Gaps = 8/190 (4%)
Query: 26 KENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTP 85
++ N K ++V NL + ++ L F +GT+ V ++ N +SR F + F P
Sbjct: 205 EQTNGSPKFTNVYVKNLSETYTDEDLKKLFGPYGTITSATVMKDVNGKSRCFGFVNFQNP 264
Query: 86 AEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQ-----YKKDK---VFVKN 137
A A +NG I + V+ + +R + + +Q Y+K + +++KN
Sbjct: 265 DSAAAAVERLNGTTINNDRVLYVGRAQRKAEREAELKAKIEQERISRYEKLQGANLYLKN 324
Query: 138 LVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQ 197
L ++ +E+LK F +FG I K++ D NG+SKG GF+ F + + A KA+ EMNG++I
Sbjct: 325 LDDSFSDEKLKDLFSEFGTITSCKVMIDSNGRSKGSGFVSFSTPEEASKALNEMNGKLIG 384
Query: 198 HNSTFVSLAE 207
+V++A+
Sbjct: 385 RKPLYVAVAQ 394
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 46/77 (59%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L++ NL+ S ++ L + F +FGT+ +V + N S+G + F+TP EA KA EMN
Sbjct: 320 LYLKNLDDSFSDEKLKDLFSEFGTITSCKVMIDSNGRSKGSGFVSFSTPEEASKALNEMN 379
Query: 97 GHLIGSKPVIITFVELK 113
G LIG KP+ + + K
Sbjct: 380 GKLIGRKPLYVAVAQRK 396
>gi|291407988|ref|XP_002720199.1| PREDICTED: poly(A) binding protein, cytoplasmic 5 [Oryctolagus
cuniculus]
Length = 382
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 87/285 (30%), Positives = 157/285 (55%), Gaps = 32/285 (11%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S+DN+AL F FG + +V + + S+G+A + F++ A A +A MN
Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVSDDHG-SKGYAYVHFDSLAAANRAIWHMN 166
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G + ++ V + + P +R+ V ++ + VFVKN + +D+E+LK F ++G
Sbjct: 167 GVRLNNRQVYVGRFKF-PEERAAEVRTRDRATFTN-VFVKNFGDDMDDEKLKELFSEYGP 224
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF- 215
VK++RD +GKSKGFGF+++ +++AA+KA+++++G+ I +V A+ KK+
Sbjct: 225 TESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQ----KKIER 280
Query: 216 --------------PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLV 261
K +PP + I++ NL +I++ + +E F+ FG+I+ + ++
Sbjct: 281 LAELRRRFERLRLKEKSRPPGVP------IYIKNLDESISDEKLKEEFSSFGSISRAKVM 334
Query: 262 SD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
+ K G + F + AT AV MNG + SKPL VTL +
Sbjct: 335 MEVGHGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQAR 379
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 78/267 (29%), Positives = 128/267 (47%), Gaps = 26/267 (9%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDES-RGFAIIVFNTPAEAKKARVEMNG 97
V +L+P V L +F+ G LR R+ R+ S G+ + F PA+A+ A MN
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 98 HLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNI 157
LI KP + + + R VG +F+KNL +++D L F FGNI
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVG---------NIFIKNLDKSIDNRALFYLFSAFGNI 132
Query: 158 IEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPK 217
+ K+V D++G SKG+ ++ F S AA +AI MNG + + +V G+ FP+
Sbjct: 133 LSCKVVSDDHG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYV-------GRFKFPE 184
Query: 218 VKPPLLQP---ARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFI 269
+ ++ A +FV N ++++ + +ELF+ +G S ++ D K GF+
Sbjct: 185 ERAAEVRTRDRATFTNVFVKNFGDDMDDEKLKELFSEYGPTESVKVIRDASGKSKGFGFV 244
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKV 296
+ + A AV ++G K L V
Sbjct: 245 RYETHEAAQKAVLDLHGKSIDGKVLYV 271
>gi|330793331|ref|XP_003284738.1| RNA-binding region-containing protein (RNP-1) [Dictyostelium
purpureum]
gi|325085338|gb|EGC38747.1| RNA-binding region-containing protein (RNP-1) [Dictyostelium
purpureum]
Length = 565
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 86/267 (32%), Positives = 133/267 (49%), Gaps = 24/267 (8%)
Query: 35 NELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDE-SRGFAIIVFNTPAEAKKARV 93
+ L+V +L P V Q L F + G + ++RV R+ N S +A + + A+A++A
Sbjct: 10 SSLYVGDLLPEVSEQTLFEVFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNAADAERALD 69
Query: 94 EMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIK 153
+N I KP I + + P R VG VF+KNL + +D + L F
Sbjct: 70 TLNNTPIRGKPCRIMWSQRDPSLRKSGVG---------NVFIKNLDKGIDHKALYDTFSA 120
Query: 154 FGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKK 213
FGNI+ K+V D+N SKGFGF+ + S +A+KAI ++NG MI FV P K
Sbjct: 121 FGNILSCKVVTDDNNSSKGFGFVHYESQDSADKAIAKVNGMMINGQKVFVG-----PFKS 175
Query: 214 VFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKHIG------ 267
+ +P + + +F NL ++ + + +EL A +GTIT+ +++ D+ G
Sbjct: 176 SKERGQPTEI---KFTNVFFKNLAEDVTSDQLKELLAPYGTITNVAIMLDEKTGKSKGFA 232
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPL 294
F F A + V NG VF KPL
Sbjct: 233 FANFESADAAKNVVEIENGKVFHGKPL 259
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 86/273 (31%), Positives = 141/273 (51%), Gaps = 19/273 (6%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ +D++AL + F FG + +V + N+ S+GF + + + A KA ++NG
Sbjct: 102 IKNLDKGIDHKALYDTFSAFGNILSCKVVTDDNNSSKGFGFVHYESQDSADKAIAKVNGM 161
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
+I + V + P + SK G + + K VF KNL E V ++LK +G I
Sbjct: 162 MINGQKVFV-----GPFKSSKERG-QPTEIKFTNVFFKNLAEDVTSDQLKELLAPYGTIT 215
Query: 159 EVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF-- 215
V I+ DE GKSKGF F F S AA+ + NG++ + A+ KK+
Sbjct: 216 NVAIMLDEKTGKSKGFAFANFESADAAKNVVEIENGKVFHGKPLYAGRAQ----KKIERE 271
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFI 269
++K + +++ N+ +I+N + E+F++FGTITS+ ++ D K GF+
Sbjct: 272 AELKHTFETKYQGVNLYIKNIDDSIDNDKLREVFSQFGTITSAVVMKDDKATTSKGFGFV 331
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
+ P AT AV+ MNG + +KPL V L+ K
Sbjct: 332 CYTSPDEATRAVTEMNGRMIGTKPLYVALAQRK 364
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 53/89 (59%), Gaps = 1/89 (1%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKK 90
Y+ L++ N++ S+DN L F +FGT+ V ++ K S+GF + + +P EA +
Sbjct: 282 YQGVNLYIKNIDDSIDNDKLREVFSQFGTITSAVVMKDDKATTSKGFGFVCYTSPDEATR 341
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSK 119
A EMNG +IG+KP+ + + K +R++
Sbjct: 342 AVTEMNGRMIGTKPLYVALAQRKDIRRAQ 370
>gi|395856984|ref|XP_003800896.1| PREDICTED: polyadenylate-binding protein 5 [Otolemur garnettii]
Length = 382
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 88/285 (30%), Positives = 155/285 (54%), Gaps = 32/285 (11%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S+DN+AL F FG + +V + N S+G+A + F++ A A +A MN
Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMN 166
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G + ++ V + + P +R+ V ++ + VFVKNL + +D+E+LK F ++G
Sbjct: 167 GVRLNNRQVYVGRFKF-PEERAAEVRTRDRATFTN-VFVKNLGDDMDDEKLKELFSEYGP 224
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF- 215
VK++RD +GKSKGFGF+++ +++AA+KA+++++G+ I +V A+ KK+
Sbjct: 225 TESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKILYVGRAQ----KKIER 280
Query: 216 --------------PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLV 261
K +PP + I++ NL I++ + +E F+ FG+I+ + ++
Sbjct: 281 LAELRRRFERLRLKDKSRPPGVP------IYIKNLDETIDDEKLKEEFSPFGSISRAKVM 334
Query: 262 SD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
+ K G + F + A AV MNG SKPL VTL +
Sbjct: 335 MEVGQGKGFGVVCFSSFEEAAKAVDEMNGRTVGSKPLHVTLGQAR 379
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 79/267 (29%), Positives = 129/267 (48%), Gaps = 26/267 (9%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDES-RGFAIIVFNTPAEAKKARVEMNG 97
V +L+P V L +F+ G LR R+ R+ S G+ + F PA+A+ A MN
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTHSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 98 HLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNI 157
L+ KP + + + R VG +F+KNL +++D L F FGNI
Sbjct: 82 DLLNGKPFRLMWSQPDDRLRKSGVG---------NIFIKNLDKSIDNRALFYLFSAFGNI 132
Query: 158 IEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPK 217
+ K+V D+NG SKG+ ++ F S AA +AI MNG + + +V G+ FP+
Sbjct: 133 LSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYV-------GRFKFPE 184
Query: 218 VKPPLLQP---ARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFI 269
+ ++ A +FV NL ++++ + +ELF+ +G S ++ D K GF+
Sbjct: 185 ERAAEVRTRDRATFTNVFVKNLGDDMDDEKLKELFSEYGPTESVKVIRDASGKSKGFGFV 244
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKV 296
+ + A AV ++G K L V
Sbjct: 245 RYETHEAAQKAVLDLHGKSIDGKILYV 271
>gi|384493509|gb|EIE84000.1| hypothetical protein RO3G_08705 [Rhizopus delemar RA 99-880]
Length = 624
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 91/309 (29%), Positives = 154/309 (49%), Gaps = 23/309 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK W + D R N + + NL+PS+DN+AL + F FG +
Sbjct: 111 KGKPCRIMWSQ---RDPSLRKTGSGN-------VFIKNLDPSIDNKALHDTFSAFGNILS 160
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
++A +++ S+G+ + + T A A +NG L+ K V +V ++ +
Sbjct: 161 CKIALDESGNSKGYGFVHYETEEAADNAIKHVNGMLLNDKKV---YVGRHVPKKERQAKI 217
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
E+ + K V+VKNL E+V +EE KFG I + D+ GKSKGFGF+ F +++
Sbjct: 218 EQFRAKFTNVYVKNLDESVKDEEFNEMLAKFGPITSALVQTDDEGKSKGFGFVNFENHED 277
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAEIVPGK-----KVFPKVKPPLLQPARKNKIFVANLPS 238
A+KA+ +N + +V+ A+ + K + + K L + +++ NL
Sbjct: 278 AQKAVDALNETEHKGKILYVARAQKKTEREEELRKQYEQAKLEKLAKYQGVNLYIKNLDD 337
Query: 239 NINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKP 293
+I++ + + F+ +G ITS+ ++ D K GF+ F P AT AV+ MNG + SKP
Sbjct: 338 DIDDEKLRQEFSVYGVITSAKVMCDEKDTSKGFGFVCFSSPDEATKAVTEMNGRMIGSKP 397
Query: 294 LKVTLSGTK 302
+ V L+ K
Sbjct: 398 IYVALAQRK 406
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 86/272 (31%), Positives = 134/272 (49%), Gaps = 20/272 (7%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+PSV L F G + +RV R+ S G+A + F+ + ++A +
Sbjct: 46 LYVGELDPSVTEAMLFEMFNMIGPVASIRVCRDAVTRRSLGYAYVNFHNIVDGERALESL 105
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI KP I + + P R G VF+KNL ++D + L F FG
Sbjct: 106 NYTLIKGKPCRIMWSQRDPSLRKTGSG---------NVFIKNLDPSIDNKALHDTFSAFG 156
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ KI DE+G SKG+GF+ + + +AA+ AI +NG ++ +V VP K+
Sbjct: 157 NILSCKIALDESGNSKGYGFVHYETEEAADNAIKHVNGMLLNDKKVYV--GRHVPKKERQ 214
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIE 270
K++ A+ ++V NL ++ + EF E+ A+FG ITS+ + +D K GF+
Sbjct: 215 AKIEQFR---AKFTNVYVKNLDESVKDEEFNEMLAKFGPITSALVQTDDEGKSKGFGFVN 271
Query: 271 FIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F + A AV +N K K L V + K
Sbjct: 272 FENHEDAQKAVDALNETEHKGKILYVARAQKK 303
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 67/122 (54%), Gaps = 6/122 (4%)
Query: 4 KGKILE-ASWDEGISDDEGARSNKENNKV-----YKENELHVNNLEPSVDNQALINEFKK 57
KGKIL A + +E R E K+ Y+ L++ NL+ +D++ L EF
Sbjct: 291 KGKILYVARAQKKTEREEELRKQYEQAKLEKLAKYQGVNLYIKNLDDDIDDEKLRQEFSV 350
Query: 58 FGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQR 117
+G + +V ++ D S+GF + F++P EA KA EMNG +IGSKP+ + + K +R
Sbjct: 351 YGVITSAKVMCDEKDTSKGFGFVCFSSPDEATKAVTEMNGRMIGSKPIYVALAQRKEIRR 410
Query: 118 SK 119
S+
Sbjct: 411 SQ 412
>gi|289742137|gb|ADD19816.1| polyA-binding protein [Glossina morsitans morsitans]
Length = 653
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 94/276 (34%), Positives = 152/276 (55%), Gaps = 16/276 (5%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ ++DN+A+ + F FG + +VA + S+G+ + F T A A ++NG
Sbjct: 94 IKNLDKTIDNKAIYDTFSAFGNILSCKVATDDKGTSKGYGFVHFETEEAANNAIEKVNGM 153
Query: 99 LIGSKPVII-TFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNI 157
L+ K V + F+ K +R K +G + K + V+VKN + VD+E+LK F +G I
Sbjct: 154 LLNGKKVYVGKFIPRK--EREKDLGEKAKLFTN--VYVKNFGDDVDDEKLKEMFDPYGKI 209
Query: 158 IEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGR-MIQHNSTFVSLAEIVPGKKVFP 216
K++ E+GKSK FGF+ F + +AAE A+ +NG+ M + +V+ A+ ++
Sbjct: 210 TSYKVMIKEDGKSKCFGFVAFETTEAAEAAVEALNGKDMGDGKALYVARAQKKAERQQEL 269
Query: 217 KVKPPLLQPARKNKI-----FVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHI 266
K K L+ R+ + +V NL I++ + F+ FGTITS+ +++D K
Sbjct: 270 KRKFEELKKKRQESVYGVNLYVKNLDDTIDDERLRKEFSLFGTITSAKVMTDEDGRSKGF 329
Query: 267 GFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ F+ P AT AV+ MNG V SKPL V L+ K
Sbjct: 330 GFVCFVAPHEATCAVTEMNGRVVGSKPLYVALAQRK 365
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 76/257 (29%), Positives = 133/257 (51%), Gaps = 22/257 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L ++ L +F G + +RV R+ S G+A + F PA+A++A M
Sbjct: 4 LYVGDLHQDINEAGLFEKFSNAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTM 63
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N L+ +KP+ I + + P R +G VF+KNL +T+D + + F FG
Sbjct: 64 NFDLLRNKPIRIMWSQRDPSLRRSGIG---------NVFIKNLDKTIDNKAIYDTFSAFG 114
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ D+ G SKG+GF+ F + +AA AI ++NG ++ N V + + +P K
Sbjct: 115 NILSCKVATDDKGTSKGYGFVHFETEEAANNAIEKVNGMLL--NGKKVYVGKFIPRK--- 169
Query: 216 PKVKPPLLQPARK-NKIFVANLPSNINNSEFEELFARFGTITSSSLV-----SDKHIGFI 269
+ + L + A+ ++V N ++++ + +E+F +G ITS ++ K GF+
Sbjct: 170 -EREKDLGEKAKLFTNVYVKNFGDDVDDEKLKEMFDPYGKITSYKVMIKEDGKSKCFGFV 228
Query: 270 EFIMPKHATHAVSTMNG 286
F + A AV +NG
Sbjct: 229 AFETTEAAEAAVEALNG 245
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 95/179 (53%), Gaps = 8/179 (4%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
++V N VD++ L F +G + +V ++ +S+ F + F T A+ A +N
Sbjct: 185 VYVKNFGDDVDDEKLKEMFDPYGKITSYKVMIKEDGKSKCFGFVAFETTEAAEAAVEALN 244
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDK--------VFVKNLVETVDEEELK 148
G +G + K +R + + + ++ KK + ++VKNL +T+D+E L+
Sbjct: 245 GKDMGDGKALYVARAQKKAERQQELKRKFEELKKKRQESVYGVNLYVKNLDDTIDDERLR 304
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
F FG I K++ DE+G+SKGFGF+ F + A A+ EMNGR++ +V+LA+
Sbjct: 305 KEFSLFGTITSAKVMTDEDGRSKGFGFVCFVAPHEATCAVTEMNGRVVGSKPLYVALAQ 363
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 54/93 (58%), Gaps = 1/93 (1%)
Query: 26 KENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTP 85
K VY N L+V NL+ ++D++ L EF FGT+ +V +++ S+GF + F P
Sbjct: 279 KRQESVYGVN-LYVKNLDDTIDDERLRKEFSLFGTITSAKVMTDEDGRSKGFGFVCFVAP 337
Query: 86 AEAKKARVEMNGHLIGSKPVIITFVELKPGQRS 118
EA A EMNG ++GSKP+ + + K +++
Sbjct: 338 HEATCAVTEMNGRVVGSKPLYVALAQRKEDRKA 370
>gi|402225283|gb|EJU05344.1| polyadenylate binding protein [Dacryopinax sp. DJM-731 SS1]
Length = 716
Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 93/316 (29%), Positives = 156/316 (49%), Gaps = 37/316 (11%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
+GK W + D G R + N + + NL+ +DN+AL + F FGT+
Sbjct: 141 RGKPCRIMWSQ---RDPGLRKTGQGN-------IFIKNLDQGIDNKALHDTFAAFGTVLS 190
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+VA + + S+G+ + +++ A+ A +NG L+ K V + GQ +
Sbjct: 191 CKVATDDSGLSKGYGFVHYDSNEAAEAAIKAVNGMLLNDKKVFV-------GQH---ISR 240
Query: 124 EEKQYKKDK-------VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFI 176
+E+Q K D+ ++VKNL V EEE + F +FG I I +DE G SKGFGF+
Sbjct: 241 KERQSKIDEMKSHFTNLYVKNLDTEVGEEEFEGLFSQFGPITSAVIQKDEEGNSKGFGFV 300
Query: 177 QFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPG-----KKVFPKVKPPLLQPARKNKI 231
F +++ A++A+ E++ + I FV A+ +K + + K + + +
Sbjct: 301 NFENHEDAQRAVEELDNKEIHGKPVFVGRAQKKSEREEELRKQYEQAKYEKAGKYQGSNL 360
Query: 232 FVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNG 286
++ NL ++++ + F FGTITS ++ D K GF+ F P AT A+S MN
Sbjct: 361 YIKNLEDDVDDEKLRAEFEPFGTITSCKVMRDEKGTSKGFGFVCFSSPDEATRAMSEMNN 420
Query: 287 HVFKSKPLKVTLSGTK 302
+ +KPL V L+ K
Sbjct: 421 KIVGTKPLYVALAQRK 436
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 78/268 (29%), Positives = 128/268 (47%), Gaps = 24/268 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+P V L F G + VRV R+ S G+A + + + ++A ++
Sbjct: 76 LYVGELDPQVTEAMLFEIFNMIGPVASVRVCRDAVTRRSLGYAYVNYLNYNDGERALDQL 135
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N I KP I + + PG R G +F+KNL + +D + L F FG
Sbjct: 136 NYSQIRGKPCRIMWSQRDPGLRKTGQG---------NIFIKNLDQGIDNKALHDTFAAFG 186
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
++ K+ D++G SKG+GF+ + S +AAE AI +NG ++ FV G+ +
Sbjct: 187 TVLSCKVATDDSGLSKGYGFVHYDSNEAAEAAIKAVNGMLLNDKKVFV-------GQHIS 239
Query: 216 PKVKPPLLQPARKN--KIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGF 268
K + + + + ++V NL + + EFE LF++FG ITS+ + D K GF
Sbjct: 240 RKERQSKIDEMKSHFTNLYVKNLDTEVGEEEFEGLFSQFGPITSAVIQKDEEGNSKGFGF 299
Query: 269 IEFIMPKHATHAVSTMNGHVFKSKPLKV 296
+ F + A AV ++ KP+ V
Sbjct: 300 VNFENHEDAQRAVEELDNKEIHGKPVFV 327
>gi|449440159|ref|XP_004137852.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Cucumis sativus]
gi|449521207|ref|XP_004167621.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Cucumis sativus]
Length = 640
Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 89/276 (32%), Positives = 141/276 (51%), Gaps = 19/276 (6%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
V NL S+++ L FKKFG + +VA + + +S+G+ + F + A A +NG
Sbjct: 106 VKNLSDSINSLGLQELFKKFGNVLSSKVATSDDGKSKGYGFVQFESEESANAAIESLNGF 165
Query: 99 LIGSKPVII-TFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNI 157
+G K + + FV + P K ++VKNL + EE L+ F +FG I
Sbjct: 166 TVGDKQIYVGKFVRKSDRVLANP------DIKYTNLYVKNLDPEIGEEHLQEKFSEFGKI 219
Query: 158 IEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLA------EIVPG 211
+ I RDENG S+GFGFI F + A++A+ +NG + +++ A E V
Sbjct: 220 SSMIISRDENGVSRGFGFINFENSDDAKRALETLNGSQLGSKVIYIARAQKKTEREEVLR 279
Query: 212 KKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHI 266
+ K K +L+ N ++V N+ ++ + E E F++FGTITSS L+ D K
Sbjct: 280 RHYEEKCKEQVLKYKGSN-VYVKNIDDDVTDEELRERFSQFGTITSSKLMRDDKGINKGF 338
Query: 267 GFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ F P A AV+T+ G +F KPL + ++ K
Sbjct: 339 GFVCFSNPDEAKRAVNTLQGCMFHGKPLYLAIAQRK 374
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 77/263 (29%), Positives = 123/263 (46%), Gaps = 24/263 (9%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKND-ESRGFAIIVFNTPAEAKKARVEM 95
L+V +L P V + L + F F +L VR+ R+ + S + + F +P +A A M
Sbjct: 16 LYVGDLHPDVTDGQLFDAFSGFKSLASVRICRDSSTGRSLSYGYVNFISPQDATNAIEVM 75
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N ++ + + + + R +G VFVKNL ++++ L+ F KFG
Sbjct: 76 NHSMLNGRAIRVMWSRRDADARKSGIG---------NVFVKNLSDSINSLGLQELFKKFG 126
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
N++ K+ ++GKSKG+GF+QF S ++A AI +NG + +V K
Sbjct: 127 NVLSSKVATSDDGKSKGYGFVQFESEESANAAIESLNGFTVGDKQIYVG--------KFV 178
Query: 216 PKVKPPLLQPARK-NKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKH-----IGFI 269
K L P K ++V NL I +E F+ FG I+S + D++ GFI
Sbjct: 179 RKSDRVLANPDIKYTNLYVKNLDPEIGEEHLQEKFSEFGKISSMIISRDENGVSRGFGFI 238
Query: 270 EFIMPKHATHAVSTMNGHVFKSK 292
F A A+ T+NG SK
Sbjct: 239 NFENSDDAKRALETLNGSQLGSK 261
Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 61/183 (33%), Positives = 104/183 (56%), Gaps = 9/183 (4%)
Query: 33 KENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKAR 92
K L+V NL+P + + L +F +FG + + ++R++N SRGF I F +AK+A
Sbjct: 191 KYTNLYVKNLDPEIGEEHLQEKFSEFGKISSMIISRDENGVSRGFGFINFENSDDAKRAL 250
Query: 93 VEMNGHLIGSKPVIITFVELKPGQRSKPVGP--EEK------QYKKDKVFVKNLVETVDE 144
+NG +GSK + I + K +R + + EEK +YK V+VKN+ + V +
Sbjct: 251 ETLNGSQLGSKVIYIARAQ-KKTEREEVLRRHYEEKCKEQVLKYKGSNVYVKNIDDDVTD 309
Query: 145 EELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVS 204
EEL+ F +FG I K++RD+ G +KGFGF+ F + A++A+ + G M +++
Sbjct: 310 EELRERFSQFGTITSSKLMRDDKGINKGFGFVCFSNPDEAKRAVNTLQGCMFHGKPLYLA 369
Query: 205 LAE 207
+A+
Sbjct: 370 IAQ 372
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 81/173 (46%), Gaps = 23/173 (13%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAIIEM 191
++V +L V + +L F F ++ V+I RD + G+S +G++ F S + A AI M
Sbjct: 16 LYVGDLHPDVTDGQLFDAFSGFKSLASVRICRDSSTGRSLSYGYVNFISPQDATNAIEVM 75
Query: 192 NGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKI---FVANLPSNINNSEFEEL 248
N M+ + V + ARK+ I FV NL +IN+ +EL
Sbjct: 76 NHSMLNGRAIRVMWSRRDAD--------------ARKSGIGNVFVKNLSDSINSLGLQEL 121
Query: 249 FARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
F +FG + SS + + K GF++F + A A+ ++NG K + V
Sbjct: 122 FKKFGNVLSSKVATSDDGKSKGYGFVQFESEESANAAIESLNGFTVGDKQIYV 174
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 45/82 (54%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
YK + ++V N++ V ++ L F +FGT+ ++ R+ ++GF + F+ P EAK+A
Sbjct: 293 YKGSNVYVKNIDDDVTDEELRERFSQFGTITSSKLMRDDKGINKGFGFVCFSNPDEAKRA 352
Query: 92 RVEMNGHLIGSKPVIITFVELK 113
+ G + KP+ + + K
Sbjct: 353 VNTLQGCMFHGKPLYLAIAQRK 374
>gi|432102707|gb|ELK30188.1| Polyadenylate-binding protein 1 [Myotis davidii]
Length = 650
Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 96/312 (30%), Positives = 159/312 (50%), Gaps = 36/312 (11%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
VN+L+ S+DN+ L + F FGT+ +V ++N +G + F T A KA EMNG
Sbjct: 111 VNHLDASIDNKELYDLFAGFGTILSCKVVSDENG-PKGHGFVHFETREAADKAIKEMNGS 169
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDK---VFVKNLVETVDEEELKSHFIKFG 155
L+ + V + + +P QR EE++ K ++ V+VKN + +E L F ++G
Sbjct: 170 LVKERKVFVGQFK-RPNQRE-----EERRAKMEQFTNVYVKNFADGTTDEYLLEIFSQYG 223
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
+ VKI+ D++GKSKGFGFI+F + A++AI E+NG+ +VS A+ ++
Sbjct: 224 PLSSVKIMTDDSGKSKGFGFIRFECHADAKRAIEEVNGKQFGGRKIYVSRAQKKKEREEE 283
Query: 216 PKVKPPLLQPARKNK-----IFVANLPSNINNSEFEELFARFGTITSSSLV----SDKHI 266
+ K ++ R K +FV NL + ++ ++FA FGT+TS+ ++ K
Sbjct: 284 LQQKLEEIKQNRIAKYHGMSLFVKNLAESTDDEHLRKIFAPFGTVTSAKVIVKGGRRKGF 343
Query: 267 GFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK-----------------PGVSITN 309
GF+ F + A AV M+G + ++PL V+ + K P S +
Sbjct: 344 GFVSFSSREEAKKAVEEMHGKMLSARPLYVSYARYKQERRAYFASYYGKKKASPAKSPST 403
Query: 310 PTKAPKKPAYID 321
P +P +PA D
Sbjct: 404 PDTSPSQPASPD 415
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 82/273 (30%), Positives = 129/273 (47%), Gaps = 33/273 (12%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L P V L +F G + VRV R+ + S G+ + F+ P +A A M
Sbjct: 21 LYVGDLHPEVTEAMLYEKFSAAGPILSVRVCRDALSSRSLGYGYVNFHRPEDAGHALNTM 80
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N ++ KPV I + P R VG VFV +L ++D +EL F FG
Sbjct: 81 NFDVLHGKPVRIMWCHRDPSLRRSGVG---------NVFVNHLDASIDNKELYDLFAGFG 131
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
I+ K+V DENG KG GF+ F + +AA+KAI EMNG +++ FV +
Sbjct: 132 TILSCKVVSDENG-PKGHGFVHFETREAADKAIKEMNGSLVKERKVFVGQFK-------- 182
Query: 216 PKVKPPLLQPARKNK------IFVANLPSNINNSEFEELFARFGTITSSSLVSD-----K 264
+P + R+ K ++V N + E+F+++G ++S +++D K
Sbjct: 183 ---RPNQREEERRAKMEQFTNVYVKNFADGTTDEYLLEIFSQYGPLSSVKIMTDDSGKSK 239
Query: 265 HIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVT 297
GFI F A A+ +NG F + + V+
Sbjct: 240 GFGFIRFECHADAKRAIEEVNGKQFGGRKIYVS 272
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 109/201 (54%), Gaps = 10/201 (4%)
Query: 23 RSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVF 82
R + K+ + ++V N ++ L+ F ++G L V++ + + +S+GF I F
Sbjct: 187 REEERRAKMEQFTNVYVKNFADGTTDEYLLEIFSQYGPLSSVKIMTDDSGKSKGFGFIRF 246
Query: 83 NTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKV--------F 134
A+AK+A E+NG G + + ++ + K +R + + + ++ K++++ F
Sbjct: 247 ECHADAKRAIEEVNGKQFGGRKIYVSRAQ-KKKEREEELQQKLEEIKQNRIAKYHGMSLF 305
Query: 135 VKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGR 194
VKNL E+ D+E L+ F FG + K++ + G+ KGFGF+ F S + A+KA+ EM+G+
Sbjct: 306 VKNLAESTDDEHLRKIFAPFGTVTSAKVIV-KGGRRKGFGFVSFSSREEAKKAVEEMHGK 364
Query: 195 MIQHNSTFVSLAEIVPGKKVF 215
M+ +VS A ++ +
Sbjct: 365 MLSARPLYVSYARYKQERRAY 385
>gi|46128087|ref|XP_388597.1| hypothetical protein FG08421.1 [Gibberella zeae PH-1]
Length = 784
Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 79/268 (29%), Positives = 132/268 (49%), Gaps = 24/268 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+PSV L F + G + +RV R+ S G+A + +N + +KA E+
Sbjct: 61 LYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNATPDGEKALEEL 120
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N +I +P I + + P R G VF+KNL +D + L F FG
Sbjct: 121 NYTIIKGRPCRIMWSQRDPALRKTGQG---------NVFIKNLDVAIDNKALHDTFAAFG 171
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ +DE G SKG+GF+ + + +AA +AI +NG ++ +V G +
Sbjct: 172 NILSCKVAQDETGASKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYV-------GHHIP 224
Query: 216 PKVKPPLLQPARKN--KIFVANLPSNINNSEFEELFARFGTITSSSLVSDKH-----IGF 268
K + + + N ++V N+ +++ +F +LF ++G +TSSSL D+ GF
Sbjct: 225 KKDRQSKFEEMKANFTNVYVKNIAADVTEDDFRQLFEKYGDVTSSSLARDQEGKSRGFGF 284
Query: 269 IEFIMPKHATHAVSTMNGHVFKSKPLKV 296
+ F + A+ AV +N F + L V
Sbjct: 285 VNFTTHESASKAVDELNNKDFHGQDLYV 312
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 105/204 (51%), Gaps = 13/204 (6%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KG+ W + D R + N + + NL+ ++DN+AL + F FG +
Sbjct: 126 KGRPCRIMWSQ---RDPALRKTGQGN-------VFIKNLDVAIDNKALHDTFAAFGNILS 175
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+VA+++ S+G+ + + T A +A +NG L+ K V + K ++SK
Sbjct: 176 CKVAQDETGASKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKF--- 232
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
EE + V+VKN+ V E++ + F K+G++ + RD+ GKS+GFGF+ F ++++
Sbjct: 233 EEMKANFTNVYVKNIAADVTEDDFRQLFEKYGDVTSSSLARDQEGKSRGFGFVNFTTHES 292
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE 207
A KA+ E+N + +V A+
Sbjct: 293 ASKAVDELNNKDFHGQDLYVGRAQ 316
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 87/211 (41%), Gaps = 41/211 (19%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
++V N+ V F+K+G + +AR++ +SRGF + F T A KA E+N
Sbjct: 242 VYVKNIAADVTEDDFRQLFEKYGDVTSSSLARDQEGKSRGFGFVNFTTHESASKAVDELN 301
Query: 97 GHLIGSKPVIITFV--------ELKPGQRSKPVGPEEKQYKKD-------KVFVKNLVET 141
+ + + EL+ + G E +Q K+ KV + E
Sbjct: 302 NKDFHGQDLYVGRAQKKHEREEELRKSYEAARRG-EGQQMNKECGSITSTKVMRETPTEV 360
Query: 142 VDEEELKSHFIKFGNIIEVKIV--------RDEN-----------------GKSKGFGFI 176
V+E++ K+ +K V +DE GKSKGFGF+
Sbjct: 361 VEEKKEKAETVKENQEEVKDEVKEEPKEESKDETKEGEEDKKAEKKSDKKLGKSKGFGFV 420
Query: 177 QFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
F + A KA+ EMN RM +V+LA+
Sbjct: 421 CFSNPDDATKAVAEMNQRMFNGKPLYVALAQ 451
>gi|356576103|ref|XP_003556173.1| PREDICTED: polyadenylate-binding protein 5-like isoform 2 [Glycine
max]
Length = 642
Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 86/275 (31%), Positives = 148/275 (53%), Gaps = 16/275 (5%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+DN+AL + F FGT+ +VA + + +S+G+ + F+ A+ A +NG
Sbjct: 127 IKNLDTSIDNKALHDTFAAFGTVLSCKVALDSSGQSKGYGFVQFDNEEAAQNAIKRLNGM 186
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
LI K V + ++ +R + G K V+VKNL ET +E+LK F +G I
Sbjct: 187 LINDKQVYVGLF-IRRQEREQTNGSP----KFTNVYVKNLSETYTDEDLKKLFGPYGTIT 241
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNST-FVSLAEIVPGKKVFPK 217
+++D NGKS+ FGF+ F + +A A+ +NG I ++ +V A+ ++ K
Sbjct: 242 SATVMKDVNGKSRCFGFVNFQNPDSAAAAVERLNGTTINNDRVLYVGRAQRKAEREAELK 301
Query: 218 VKPPLLQPARKNKI-----FVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIG 267
K + +R K+ ++ NL + ++ + ++LF+ FGTITS ++ D K G
Sbjct: 302 AKIEQERISRYEKLQGANLYLKNLDDSFSDEKLKDLFSEFGTITSCKVMIDSNGRSKGSG 361
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F+ F P+ A+ A++ MNG + KPL V ++ K
Sbjct: 362 FVSFSTPEEASKALNEMNGKLIGRKPLYVAVAQRK 396
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 76/262 (29%), Positives = 125/262 (47%), Gaps = 34/262 (12%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESR-GFAIIVFNTPAEAKKARVEM 95
L+V +LE +V+ + L + F + + +RV R++ S G+A + F +A A +
Sbjct: 37 LYVGDLEGNVNEEQLYDLFSQVAQIASIRVCRDQTKRSSLGYAYVNFANAQDASNAMELL 96
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N + KP+ I F + P R G VF+KNL ++D + L F FG
Sbjct: 97 NFTPLNGKPIRIMFSQRDPSIRKSGHG---------NVFIKNLDTSIDNKALHDTFAAFG 147
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL------AEIV 209
++ K+ D +G+SKG+GF+QF + +AA+ AI +NG +I +V L E
Sbjct: 148 TVLSCKVALDSSGQSKGYGFVQFDNEEAAQNAIKRLNGMLINDKQVYVGLFIRRQEREQT 207
Query: 210 PGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----K 264
G F ++V NL + + ++LF +GTITS++++ D +
Sbjct: 208 NGSPKF-------------TNVYVKNLSETYTDEDLKKLFGPYGTITSATVMKDVNGKSR 254
Query: 265 HIGFIEFIMPKHATHAVSTMNG 286
GF+ F P A AV +NG
Sbjct: 255 CFGFVNFQNPDSAAAAVERLNG 276
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 100/190 (52%), Gaps = 8/190 (4%)
Query: 26 KENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTP 85
++ N K ++V NL + ++ L F +GT+ V ++ N +SR F + F P
Sbjct: 205 EQTNGSPKFTNVYVKNLSETYTDEDLKKLFGPYGTITSATVMKDVNGKSRCFGFVNFQNP 264
Query: 86 AEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQ-----YKKDK---VFVKN 137
A A +NG I + V+ + +R + + +Q Y+K + +++KN
Sbjct: 265 DSAAAAVERLNGTTINNDRVLYVGRAQRKAEREAELKAKIEQERISRYEKLQGANLYLKN 324
Query: 138 LVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQ 197
L ++ +E+LK F +FG I K++ D NG+SKG GF+ F + + A KA+ EMNG++I
Sbjct: 325 LDDSFSDEKLKDLFSEFGTITSCKVMIDSNGRSKGSGFVSFSTPEEASKALNEMNGKLIG 384
Query: 198 HNSTFVSLAE 207
+V++A+
Sbjct: 385 RKPLYVAVAQ 394
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 46/77 (59%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L++ NL+ S ++ L + F +FGT+ +V + N S+G + F+TP EA KA EMN
Sbjct: 320 LYLKNLDDSFSDEKLKDLFSEFGTITSCKVMIDSNGRSKGSGFVSFSTPEEASKALNEMN 379
Query: 97 GHLIGSKPVIITFVELK 113
G LIG KP+ + + K
Sbjct: 380 GKLIGRKPLYVAVAQRK 396
>gi|242076392|ref|XP_002448132.1| hypothetical protein SORBIDRAFT_06g021850 [Sorghum bicolor]
gi|241939315|gb|EES12460.1| hypothetical protein SORBIDRAFT_06g021850 [Sorghum bicolor]
Length = 664
Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 95/317 (29%), Positives = 153/317 (48%), Gaps = 49/317 (15%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ ++DN+ L F FGT+ +VA ++ +S+GF + + A+ A +N
Sbjct: 136 IFIKNLDKTIDNKTLHETFSSFGTILSCKVAMDEAGQSKGFGFVQYEKEEAAQNAIKSLN 195
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGP----EEKQYKKDK-----VFVKNLVETVDEEEL 147
G LI KPV VGP +E+ + DK VFVKNL E+ +E+L
Sbjct: 196 GMLINDKPVF--------------VGPFLRKQERDHSFDKTKFNNVFVKNLSESTTKEDL 241
Query: 148 KSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
F ++G+I ++ +GKS+ FGFI F + AA +A+ E+NG+ I +V A+
Sbjct: 242 LKVFGEYGSITSAVVMIGMDGKSRCFGFINFENPDAASRAVQELNGKKINDKEWYVGRAQ 301
Query: 208 I-----VPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
+ K+ F + + +++ NL +I + + ELF+ FG ITS ++
Sbjct: 302 KKSEREMELKRRFEQSLKDAADKYQGLNLYLKNLDDSIGDDQLRELFSNFGKITSYKVMR 361
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVT---------------LSGTK 302
D K GF+ F + A+ A++ MNG + KPL V S +
Sbjct: 362 DQNGLSKGSGFVAFSTREEASQALTEMNGKMISGKPLYVAFAQRKEDRKAMLQAQFSQMR 421
Query: 303 PGVSITNPTKAPKKPAY 319
P V +T PT AP+ P Y
Sbjct: 422 PAVPMT-PTLAPRLPMY 437
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 77/256 (30%), Positives = 128/256 (50%), Gaps = 22/256 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKKARVEM 95
L+V +LE SV + L F + G + VRV R+ + S G+A + F+ P +A +A +
Sbjct: 48 LYVGDLEGSVSDSQLYELFSQAGQVVSVRVCRDVTSRRSLGYAYVNFSNPLDAARALEVL 107
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N ++ +KP+ + + P R + +F+KNL +T+D + L F FG
Sbjct: 108 NFAVLNNKPIRVMYSNRDPSSR---------RSGSANIFIKNLDKTIDNKTLHETFSSFG 158
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
I+ K+ DE G+SKGFGF+Q+ +AA+ AI +NG +I FV G +
Sbjct: 159 TILSCKVAMDEAGQSKGFGFVQYEKEEAAQNAIKSLNGMLINDKPVFV-------GPFLR 211
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLV-----SDKHIGFIE 270
+ + + N +FV NL + + ++F +G+ITS+ ++ + GFI
Sbjct: 212 KQERDHSFDKTKFNNVFVKNLSESTTKEDLLKVFGEYGSITSAVVMIGMDGKSRCFGFIN 271
Query: 271 FIMPKHATHAVSTMNG 286
F P A+ AV +NG
Sbjct: 272 FENPDAASRAVQELNG 287
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 108/230 (46%), Gaps = 26/230 (11%)
Query: 33 KENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKAR 92
K N + V NL S + L+ F ++G++ V + +SR F I F P A +A
Sbjct: 223 KFNNVFVKNLSESTTKEDLLKVFGEYGSITSAVVMIGMDGKSRCFGFINFENPDAASRAV 282
Query: 93 VEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDK--------VFVKNLVETVDE 144
E+NG I K + + K +R + +Q KD +++KNL +++ +
Sbjct: 283 QELNGKKINDKEWYVGRAQ-KKSEREMELKRRFEQSLKDAADKYQGLNLYLKNLDDSIGD 341
Query: 145 EELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVS 204
++L+ F FG I K++RD+NG SKG GF+ F + + A +A+ EMNG+MI +V+
Sbjct: 342 DQLRELFSNFGKITSYKVMRDQNGLSKGSGFVAFSTREEASQALTEMNGKMISGKPLYVA 401
Query: 205 LA---------------EIVPGKKVFPKVKP--PLLQPARKNKIFVANLP 237
A ++ P + P + P P+ P ++F P
Sbjct: 402 FAQRKEDRKAMLQAQFSQMRPAVPMTPTLAPRLPMYPPMAPQQLFYGQAP 451
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 50/91 (54%)
Query: 23 RSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVF 82
+S K+ Y+ L++ NL+ S+ + L F FG + +V R++N S+G + F
Sbjct: 316 QSLKDAADKYQGLNLYLKNLDDSIGDDQLRELFSNFGKITSYKVMRDQNGLSKGSGFVAF 375
Query: 83 NTPAEAKKARVEMNGHLIGSKPVIITFVELK 113
+T EA +A EMNG +I KP+ + F + K
Sbjct: 376 STREEASQALTEMNGKMISGKPLYVAFAQRK 406
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 6/86 (6%)
Query: 224 QPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIG--FIEFIMPKHA 277
QP ++V +L ++++S+ ELF++ G + S + D + +G ++ F P A
Sbjct: 41 QPLPTTSLYVGDLEGSVSDSQLYELFSQAGQVVSVRVCRDVTSRRSLGYAYVNFSNPLDA 100
Query: 278 THAVSTMNGHVFKSKPLKVTLSGTKP 303
A+ +N V +KP++V S P
Sbjct: 101 ARALEVLNFAVLNNKPIRVMYSNRDP 126
>gi|291227649|ref|XP_002733794.1| PREDICTED: polyadenylate-binding protein 1-like [Saccoglossus
kowalevskii]
Length = 655
Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 86/275 (31%), Positives = 155/275 (56%), Gaps = 16/275 (5%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+DN+A+ + F FG + +V ++N S+G+ + F T A K+ ++NG
Sbjct: 103 IKNLDKSIDNKAMYDTFSAFGDILSCKVVCDENG-SKGYGFVHFATEEAANKSIEKVNGM 161
Query: 99 LIGSKPVII-TFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNI 157
L+ K V + F+ K +R +G ++K++ VFVKN + +D+E L+ F ++G I
Sbjct: 162 LLNGKKVYVGKFMSRK--ERYDAMGGQQKKFTN--VFVKNFGDELDDEGLREMFERYGKI 217
Query: 158 IEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFP 216
+ K+++D+ +G++KGFGF+ F AE A ++N + I +V A+ ++
Sbjct: 218 VSHKVMQDDHSGRNKGFGFVCFEDPIDAENACDDLNMKDINGRILYVGRAQKKIERQAEL 277
Query: 217 KVKPPLLQPARKNK-----IFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIG 267
+ + L++ R N+ ++V NL ++++ + F FGTITS+ ++S+ K G
Sbjct: 278 RNRFELMKAERANRYQGVNLYVKNLDDSLDDERLRKEFMPFGTITSAKVMSEGGRSKGFG 337
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F+ F P+ AT AV+ MNG + +KPL V L+ K
Sbjct: 338 FVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRK 372
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 79/263 (30%), Positives = 129/263 (49%), Gaps = 26/263 (9%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHNDVTEAMLFEKFSSAGPILSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I +P+ I + + P R VG VF+KNL +++D + +
Sbjct: 68 ALDSMNFDVIKGRPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKSIDNKAMYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVP 210
F FG+I+ K+V DENG SKG+GF+ F + +AA K+I ++NG ++ +V
Sbjct: 119 FSAFGDILSCKVVCDENG-SKGYGFVHFATEEAANKSIEKVNGMLLNGKKVYV------- 170
Query: 211 GKKVFPKVKPPLL--QPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKH--- 265
GK + K + + Q + +FV N +++ E+F R+G I S ++ D H
Sbjct: 171 GKFMSRKERYDAMGGQQKKFTNVFVKNFGDELDDEGLREMFERYGKIVSHKVMQDDHSGR 230
Query: 266 ---IGFIEFIMPKHATHAVSTMN 285
GF+ F P A +A +N
Sbjct: 231 NKGFGFVCFEDPIDAENACDDLN 253
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L+V NL+ S+D++ L EF FGT+ +V ++ S+GF + F++P EA KA
Sbjct: 292 YQGVNLYVKNLDDSLDDERLRKEFMPFGTITSAKVM-SEGGRSKGFGFVCFSSPEEATKA 350
Query: 92 RVEMNGHLIGSKPVIITFVELK 113
EMNG ++ +KP+ + + K
Sbjct: 351 VTEMNGRIVSTKPLYVALAQRK 372
>gi|1737492|gb|AAB38974.1| poly(A)-binding protein [Triticum aestivum]
Length = 651
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 86/276 (31%), Positives = 140/276 (50%), Gaps = 15/276 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S+DN+AL + F FG + +VA + ES+G+ + + A A ++N
Sbjct: 122 IFIKNLDKSIDNKALYDTFCVFGNILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLN 181
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G L+ K V + K + + P K + V+VKNL ET E++LK F KFG
Sbjct: 182 GMLMNDKKVYVGPFVRKQERDNSP-----GNVKFNNVYVKNLAETTTEDDLKEIFGKFGA 236
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEI-----VPG 211
I V ++RD +G+SK FGF+ F S A A+ ++NG+ +V A+ +
Sbjct: 237 ITSVVVMRDGDGRSKCFGFVNFESPDEAALAVQDLNGKKFSDKEWYVGRAQKKSEREIEL 296
Query: 212 KKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHI 266
K+ F K + +++ NL +++ + ELFA FGTITS ++ D +
Sbjct: 297 KEKFEKNLQEAADKYQNTNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGS 356
Query: 267 GFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ F A+ A++ MN + +KPL V L+ K
Sbjct: 357 GFVAFKSADDASRALAEMNNKMVGNKPLYVALAQRK 392
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 81/273 (29%), Positives = 130/273 (47%), Gaps = 34/273 (12%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKK 90
+ L+V +L+ SV + L + F + G + VRV R+ + +S G+A + +NTPA+A +
Sbjct: 29 FPATSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAAR 88
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A +N I +P+ I + P R +F+KNL +++D + L
Sbjct: 89 ALEMLNFTPINGRPIRIMYSNRDPSLRKSGTA---------NIFIKNLDKSIDNKALYDT 139
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+ D G+SKG+GF+Q+ +AA AI ++NG ++ +V
Sbjct: 140 FCVFGNILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFVRKQ 199
Query: 206 -AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD- 263
+ PG F N ++V NL + +E+F +FG ITS ++ D
Sbjct: 200 ERDNSPGNVKF-------------NNVYVKNLAETTTEDDLKEIFGKFGAITSVVVMRDG 246
Query: 264 ----KHIGFIEFIMPKHATHAVSTMNGHVFKSK 292
K GF+ F P A AV +NG F K
Sbjct: 247 DGRSKCFGFVNFESPDEAALAVQDLNGKKFSDK 279
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 98/192 (51%), Gaps = 9/192 (4%)
Query: 23 RSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVF 82
R N N K N ++V NL + L F KFG + V V R+ + S+ F + F
Sbjct: 201 RDNSPGN--VKFNNVYVKNLAETTTEDDLKEIFGKFGAITSVVVMRDGDGRSKCFGFVNF 258
Query: 83 NTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQR-------SKPVGPEEKQYKKDKVFV 135
+P EA A ++NG K + + K + K + +Y+ +++
Sbjct: 259 ESPDEAALAVQDLNGKKFSDKEWYVGRAQKKSEREIELKEKFEKNLQEAADKYQNTNLYL 318
Query: 136 KNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRM 195
KNL +TVD+E+L+ F +FG I K++RD NG S+G GF+ F S A +A+ EMN +M
Sbjct: 319 KNLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAEMNNKM 378
Query: 196 IQHNSTFVSLAE 207
+ + +V+LA+
Sbjct: 379 VGNKPLYVALAQ 390
>gi|340719920|ref|XP_003398392.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2 [Bombus
terrestris]
Length = 609
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 84/274 (30%), Positives = 145/274 (52%), Gaps = 34/274 (12%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ ++DN+A+ + F FG + +VA++++ S+G+ + F T A K+ +NG
Sbjct: 103 IKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGM 162
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ K + V+VKN E + +++LK F K+G I
Sbjct: 163 LLNGKKLFTN------------------------VYVKNFGEDMTDDKLKEMFEKYGTIT 198
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMI-QHNSTFVSLAEIVPGKKVFPK 217
K++ ++GKS+GFGF+ F AAE+A++E+NG+ + + +V A+ ++ K
Sbjct: 199 SHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELK 258
Query: 218 VKPPLLQPARKNK-----IFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGF 268
K L+ R N+ ++V NL +I++ + FA FGTITS+ ++ + K GF
Sbjct: 259 RKFEQLKLERLNRYQGVNLYVKNLDDSIDDERLRKEFAPFGTITSAKVMMEEGRSKGFGF 318
Query: 269 IEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
+ F P+ AT AV+ MNG + +KPL V L+ K
Sbjct: 319 VCFSAPEEATKAVTEMNGRIIVTKPLYVALAQRK 352
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 76/261 (29%), Positives = 126/261 (48%), Gaps = 41/261 (15%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L + L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I +P+ I + + P R VG VF+KNL + +D + +
Sbjct: 68 ALDTMNFDMIKGRPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKNIDNKAMYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVP 210
F FGNI+ K+ +DE+G SKG+GF+ F + +AA K+I +NG ++
Sbjct: 119 FSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLN------------- 165
Query: 211 GKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLV-----SDKH 265
GKK+F ++V N ++ + + +E+F ++GTITS ++ +
Sbjct: 166 GKKLF-------------TNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRG 212
Query: 266 IGFIEFIMPKHATHAVSTMNG 286
GF+ F P A AV +NG
Sbjct: 213 FGFVAFEDPDAAEQAVLELNG 233
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L+V NL+ S+D++ L EF FGT+ +V + S+GF + F+ P EA KA
Sbjct: 272 YQGVNLYVKNLDDSIDDERLRKEFAPFGTITSAKVMMEEG-RSKGFGFVCFSAPEEATKA 330
Query: 92 RVEMNGHLIGSKPVIITFVELK 113
EMNG +I +KP+ + + K
Sbjct: 331 VTEMNGRIIVTKPLYVALAQRK 352
>gi|13430610|gb|AAK25927.1|AF360217_1 putative poly(A) binding protein [Arabidopsis thaliana]
Length = 662
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 89/285 (31%), Positives = 142/285 (49%), Gaps = 33/285 (11%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L V NL+ SVDN+ L F GT+ +VA + +SRG+ + F+T AK A ++N
Sbjct: 136 LFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHMGQSRGYGFVQFDTEDSAKNAIEKLN 195
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGP----EEKQYKKDK-----VFVKNLVETVDEEEL 147
G ++ K + VGP EE++ DK V+VKNL E ++EL
Sbjct: 196 GKVLNDKQIF--------------VGPFLRKEERESAADKMKFTNVYVKNLSEATTDDEL 241
Query: 148 KSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
K+ F ++G+I ++RD +GKS+ FGF+ F + + A +A+ +NG+ +V A+
Sbjct: 242 KTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALNGKKFDDKEWYVGKAQ 301
Query: 208 IVPGKKVFPKVKPPLLQPARKNK-----IFVANLPSNINNSEFEELFARFGTITSSSLVS 262
+++ + NK ++V NL + + + ELFA FGTITS ++
Sbjct: 302 KKSERELELSRRYEQGSSDGGNKFDGLNLYVKNLDDTVTDEKLRELFAEFGTITSCKVMR 361
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
D K GF+ F A+ ++ MNG + KPL V L+ K
Sbjct: 362 DPSGTSKGSGFVAFSAASEASRVLNEMNGKMVGGKPLYVALAQRK 406
Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 70/262 (26%), Positives = 128/262 (48%), Gaps = 22/262 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L+ +V + L + F + + VRV R+ + S G+ + ++ +A+KA ++
Sbjct: 48 LYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQKL 107
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N + K + IT+ R VG +FVKNL ++VD + L F G
Sbjct: 108 NYSYLNGKMIRITYSSRDSSARRSGVG---------NLFVKNLDKSVDNKTLHEAFSGCG 158
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
I+ K+ D G+S+G+GF+QF + +A+ AI ++NG+++ FV G +
Sbjct: 159 TIVSCKVATDHMGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFV-------GPFLR 211
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIE 270
+ + + ++V NL + E + F ++G+I+S+ ++ D + GF+
Sbjct: 212 KEERESAADKMKFTNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVN 271
Query: 271 FIMPKHATHAVSTMNGHVFKSK 292
F P+ A AV +NG F K
Sbjct: 272 FENPEDAARAVEALNGKKFDDK 293
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 49/83 (59%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L+V NL+ +V ++ L F +FGT+ +V R+ + S+G + F+ +EA + EMN
Sbjct: 330 LYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMN 389
Query: 97 GHLIGSKPVIITFVELKPGQRSK 119
G ++G KP+ + + K +R+K
Sbjct: 390 GKMVGGKPLYVALAQRKEERRAK 412
>gi|410988961|ref|XP_004000741.1| PREDICTED: polyadenylate-binding protein 5 [Felis catus]
Length = 382
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 88/282 (31%), Positives = 154/282 (54%), Gaps = 32/282 (11%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S+DN+AL F FG + +V + N S+G+A + F++ A A +A MN
Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMN 166
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G + ++ V + + P +R+ V +++ + VFVKN + +D+E+LK F +G
Sbjct: 167 GVRLNNRQVYVGRFKF-PEERAAEVRTKDRATFTN-VFVKNFGDDMDDEKLKEIFSGYGP 224
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF- 215
VK++RD +GKSKGFGF+++ +++AA+KA+++++G+ I +V A+ KK+
Sbjct: 225 TESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSINGKVLYVGRAQ----KKIER 280
Query: 216 --------------PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLV 261
K +PP + I++ NL I++ + +E F+ FG+I+ + ++
Sbjct: 281 LAELRRRFERLRLKEKSRPPGVP------IYIKNLDETIDDEKLKEEFSSFGSISRAKVM 334
Query: 262 SD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299
+ K G + F + AT AV MNG SKPL VTL
Sbjct: 335 VEVGQGKGFGVVCFSSFEDATKAVDEMNGRTVGSKPLHVTLG 376
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 78/267 (29%), Positives = 128/267 (47%), Gaps = 26/267 (9%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDES-RGFAIIVFNTPAEAKKARVEMNG 97
V +L+P V L +F+ G LR R+ R+ S G+ + F PA+A+ A MN
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 98 HLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNI 157
LI KP + + + R VG +F+KNL +++D L F FGNI
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVG---------NIFIKNLDKSIDNRALFYLFSAFGNI 132
Query: 158 IEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPK 217
+ K+V D+NG SKG+ ++ F S AA +AI MNG + + +V G+ FP+
Sbjct: 133 LSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYV-------GRFKFPE 184
Query: 218 VKPPLLQP---ARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFI 269
+ ++ A +FV N ++++ + +E+F+ +G S ++ D K GF+
Sbjct: 185 ERAAEVRTKDRATFTNVFVKNFGDDMDDEKLKEIFSGYGPTESVKVIRDASGKSKGFGFV 244
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKV 296
+ + A AV ++G K L V
Sbjct: 245 RYETHEAAQKAVLDLHGKSINGKVLYV 271
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 97/178 (54%), Gaps = 8/178 (4%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ V N +D++ L F +G V+V R+ + +S+GF + + T A+KA ++++
Sbjct: 201 VFVKNFGDDMDDEKLKEIFSGYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDK-------VFVKNLVETVDEEELKS 149
G I K + + + K + ++ E+ K+K +++KNL ET+D+E+LK
Sbjct: 261 GKSINGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETIDDEKLKE 320
Query: 150 HFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
F FG+I K++ E G+ KGFG + F S++ A KA+ EMNGR + V+L +
Sbjct: 321 EFSSFGSISRAKVMV-EVGQGKGFGVVCFSSFEDATKAVDEMNGRTVGSKPLHVTLGQ 377
>gi|15227815|ref|NP_179916.1| poly(A) binding protein 4 [Arabidopsis thaliana]
gi|2642429|gb|AAB87097.1| putative poly(A) binding protein [Arabidopsis thaliana]
gi|15292851|gb|AAK92796.1| putative poly(A) binding protein [Arabidopsis thaliana]
gi|19310779|gb|AAL85120.1| putative poly(A) binding protein [Arabidopsis thaliana]
gi|330252352|gb|AEC07446.1| poly(A) binding protein 4 [Arabidopsis thaliana]
Length = 662
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 89/285 (31%), Positives = 142/285 (49%), Gaps = 33/285 (11%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L V NL+ SVDN+ L F GT+ +VA + +SRG+ + F+T AK A ++N
Sbjct: 136 LFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHMGQSRGYGFVQFDTEDSAKNAIEKLN 195
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGP----EEKQYKKDK-----VFVKNLVETVDEEEL 147
G ++ K + VGP EE++ DK V+VKNL E ++EL
Sbjct: 196 GKVLNDKQIF--------------VGPFLRKEERESAADKMKFTNVYVKNLSEATTDDEL 241
Query: 148 KSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
K+ F ++G+I ++RD +GKS+ FGF+ F + + A +A+ +NG+ +V A+
Sbjct: 242 KTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALNGKKFDDKEWYVGKAQ 301
Query: 208 IVPGKKVFPKVKPPLLQPARKNK-----IFVANLPSNINNSEFEELFARFGTITSSSLVS 262
+++ + NK ++V NL + + + ELFA FGTITS ++
Sbjct: 302 KKSERELELSRRYEQGSSDGGNKFDGLNLYVKNLDDTVTDEKLRELFAEFGTITSCKVMR 361
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
D K GF+ F A+ ++ MNG + KPL V L+ K
Sbjct: 362 DPSGTSKGSGFVAFSAASEASRVLNEMNGKMVGGKPLYVALAQRK 406
Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 70/262 (26%), Positives = 128/262 (48%), Gaps = 22/262 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L+ +V + L + F + + VRV R+ + S G+ + ++ +A+KA ++
Sbjct: 48 LYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQKL 107
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N + K + IT+ R VG +FVKNL ++VD + L F G
Sbjct: 108 NYSYLNGKMIRITYSSRDSSARRSGVG---------NLFVKNLDKSVDNKTLHEAFSGCG 158
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
I+ K+ D G+S+G+GF+QF + +A+ AI ++NG+++ FV G +
Sbjct: 159 TIVSCKVATDHMGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFV-------GPFLR 211
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIE 270
+ + + ++V NL + E + F ++G+I+S+ ++ D + GF+
Sbjct: 212 KEERESAADKMKFTNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVN 271
Query: 271 FIMPKHATHAVSTMNGHVFKSK 292
F P+ A AV +NG F K
Sbjct: 272 FENPEDAARAVEALNGKKFDDK 293
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 49/83 (59%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L+V NL+ +V ++ L F +FGT+ +V R+ + S+G + F+ +EA + EMN
Sbjct: 330 LYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMN 389
Query: 97 GHLIGSKPVIITFVELKPGQRSK 119
G ++G KP+ + + K +R+K
Sbjct: 390 GKMVGGKPLYVALAQRKEERRAK 412
>gi|357510891|ref|XP_003625734.1| Polyadenylate binding protein [Medicago truncatula]
gi|355500749|gb|AES81952.1| Polyadenylate binding protein [Medicago truncatula]
Length = 613
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 87/275 (31%), Positives = 146/275 (53%), Gaps = 17/275 (6%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
V NL S+DN L + FKKFG + +V +++ +S+G+ + F T A A +NG+
Sbjct: 102 VKNLAESIDNSGLEDMFKKFGNILSSKVVMSEDGKSKGYGFVQFETEESANAAIERLNGY 161
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+G K + + K + S GP+ + +++KNL + E L+ F FG II
Sbjct: 162 LVGDKQIYVGKFVKKSDRISS--GPDTRY---TNLYMKNLDLDISETLLREKFSSFGKII 216
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLA------EIVPGK 212
+ + +D NG SKGFGF+ F + + A++A+ MNG + +V+ A E + +
Sbjct: 217 SLAVAKDSNGMSKGFGFVNFDNPEDAKRAMETMNGLQLGSKILYVARAQKKAEREQILHQ 276
Query: 213 KVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIG 267
+ K K +L+ N I+V N+ N+++ + F+ GTITS+ ++ D K G
Sbjct: 277 QFEEKRKEQVLKYKGSN-IYVKNIDDNVSDEGLRDHFSVCGTITSAKIMRDDKGISKGFG 335
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F+ F P+ A AV++ +G +F KPL V+L+ K
Sbjct: 336 FVCFSTPEEANKAVNSFHGFMFHGKPLYVSLAQRK 370
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 84/267 (31%), Positives = 131/267 (49%), Gaps = 22/267 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKND-ESRGFAIIVFNTPAEAKKARVEM 95
L+V +L P + + L + F F TL VR+ R+ + +S + + F +P +A +A
Sbjct: 12 LYVGDLHPDLSDSQLHDAFSDFKTLASVRICRDSSSGKSLCYGYVNFLSPHDAIRAIEVK 71
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N + K + + + P R +G VFVKNL E++D L+ F KFG
Sbjct: 72 NHSTLNGKAIRVMWSRRDPDARKSCIG---------NVFVKNLAESIDNSGLEDMFKKFG 122
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+V E+GKSKG+GF+QF + ++A AI +NG ++ +V GK V
Sbjct: 123 NILSSKVVMSEDGKSKGYGFVQFETEESANAAIERLNGYLVGDKQIYV-------GKFVK 175
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIE 270
+ R +++ NL +I+ + E F+ FG I S ++ D K GF+
Sbjct: 176 KSDRISSGPDTRYTNLYMKNLDLDISETLLREKFSSFGKIISLAVAKDSNGMSKGFGFVN 235
Query: 271 FIMPKHATHAVSTMNGHVFKSKPLKVT 297
F P+ A A+ TMNG SK L V
Sbjct: 236 FDNPEDAKRAMETMNGLQLGSKILYVA 262
Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 62/179 (34%), Positives = 99/179 (55%), Gaps = 9/179 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L++ NL+ + L +F FG + + VA++ N S+GF + F+ P +AK+A MN
Sbjct: 191 LYMKNLDLDISETLLREKFSSFGKIISLAVAKDSNGMSKGFGFVNFDNPEDAKRAMETMN 250
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGP--EEKQ------YKKDKVFVKNLVETVDEEELK 148
G +GSK + + + K +R + + EEK+ YK ++VKN+ + V +E L+
Sbjct: 251 GLQLGSKILYVARAQ-KKAEREQILHQQFEEKRKEQVLKYKGSNIYVKNIDDNVSDEGLR 309
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
HF G I KI+RD+ G SKGFGF+ F + + A KA+ +G M +VSLA+
Sbjct: 310 DHFSVCGTITSAKIMRDDKGISKGFGFVCFSTPEEANKAVNSFHGFMFHGKPLYVSLAQ 368
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 46/82 (56%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
YK + ++V N++ +V ++ L + F GT+ ++ R+ S+GF + F+TP EA KA
Sbjct: 289 YKGSNIYVKNIDDNVSDEGLRDHFSVCGTITSAKIMRDDKGISKGFGFVCFSTPEEANKA 348
Query: 92 RVEMNGHLIGSKPVIITFVELK 113
+G + KP+ ++ + K
Sbjct: 349 VNSFHGFMFHGKPLYVSLAQRK 370
>gi|242802487|ref|XP_002483981.1| polyadenylate-binding protein [Talaromyces stipitatus ATCC 10500]
gi|218717326|gb|EED16747.1| polyadenylate-binding protein [Talaromyces stipitatus ATCC 10500]
Length = 751
Score = 130 bits (327), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 80/268 (29%), Positives = 132/268 (49%), Gaps = 24/268 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+PSV L F G + +RV R+ S G+A + +N A+ ++A ++
Sbjct: 52 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 111
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI +P I + + P R G VF+KNL +D + L F FG
Sbjct: 112 NYTLIKGRPCRIMWSQRDPALRKTGQG---------NVFIKNLDTAIDNKALHDTFAAFG 162
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ +DE G SKG+GF+ + + +AA AI +NG ++ FV G +
Sbjct: 163 NILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFV-------GHHIS 215
Query: 216 PKVKPPLLQPARKN--KIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGF 268
K + + + N ++V N+ + + EF ELF ++G ITS+++ D + GF
Sbjct: 216 KKDRQSKFEEMKANFTNVYVKNIDPEVTDEEFRELFGKYGDITSATISRDDSGKSRGFGF 275
Query: 269 IEFIMPKHATHAVSTMNGHVFKSKPLKV 296
+ ++ ++A AV +N F S+ L V
Sbjct: 276 VNYVDHQNAQSAVDELNDKDFHSQKLYV 303
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 85/327 (25%), Positives = 150/327 (45%), Gaps = 61/327 (18%)
Query: 34 ENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARV 93
+ + + NL+ ++DN+AL + F FG + +VA+++ S+G+ + + T A A
Sbjct: 137 QGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIK 196
Query: 94 EMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIK 153
+NG L+ K V + K ++SK EE + V+VKN+ V +EE + F K
Sbjct: 197 HVNGMLLNDKKVFVGHHISKKDRQSKF---EEMKANFTNVYVKNIDPEVTDEEFRELFGK 253
Query: 154 FGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGK- 212
+G+I I RD++GKS+GFGF+ + ++ A+ A+ E+N + +V A+ +
Sbjct: 254 YGDITSATISRDDSGKSRGFGFVNYVDHQNAQSAVDELNDKDFHSQKLYVGRAQKKHERE 313
Query: 213 -KVFPKVKPPLLQPARKNK---IFVANLPSNINNSEFEELFARFGTITSSSLVSD----- 263
++ + + L+ A K + ++V NL ++++ + ELF+ FGTITS+ ++ D
Sbjct: 314 EELRRQYEAARLEKASKYQGVNLYVKNLTDDVDDDKLRELFSPFGTITSAKVMRDTVGVS 373
Query: 264 ------------------------------------------------KHIGFIEFIMPK 275
K GF+ F P
Sbjct: 374 SDSDKEEGKEASEKEGEEASEKEETKVKAEDEEKTETKKPEKKVFGKSKGFGFVCFSSPD 433
Query: 276 HATHAVSTMNGHVFKSKPLKVTLSGTK 302
A+ AV+ MN + KPL V L+ K
Sbjct: 434 EASKAVTEMNQRMVNGKPLYVALAQRK 460
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 28/46 (60%)
Query: 74 SRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSK 119
S+GF + F++P EA KA EMN ++ KP+ + + K ++S+
Sbjct: 421 SKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRKSQ 466
>gi|356564176|ref|XP_003550332.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 654
Score = 130 bits (327), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 92/308 (29%), Positives = 160/308 (51%), Gaps = 32/308 (10%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ ++D++AL + F FG + ++A + + S+G+ + F+ A+ A ++N
Sbjct: 125 IFIKNLDKAIDHKALHDTFSSFGLILSCKIATDASGLSKGYGFVQFDNEEAAQNAIDKLN 184
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G LI K V + L+ R + + K + V+VKNL E+ +EEL +F ++G
Sbjct: 185 GMLINDKQVYVGHF-LRKQDRENAL----SKTKFNNVYVKNLSESTTDEELMINFGEYGT 239
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKK--V 214
I I+RD +GKS+ FGF+ F + A KA+ +NG+ +V A+ ++ +
Sbjct: 240 ITSALIMRDADGKSRCFGFVNFENPDDAAKAVEGLNGKKFDDKEWYVGKAQKKSEREQEL 299
Query: 215 FPKVKPPLLQPARKN---KIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHI 266
+ + + + A K +++ NL I++ + +E+FA +GTITS ++ D +
Sbjct: 300 KGRFEQSIKEAADKYPGLNLYLKNLDDTISDEKLKEMFADYGTITSCKVMRDPTGISRGS 359
Query: 267 GFIEFIMPKHATHAVSTMNGHVFKSKPLKVTL---------------SGTKPGVSITNPT 311
GF+ F P+ AT A+ MNG +F KPL V L S +P V+IT P+
Sbjct: 360 GFVAFSTPEEATRALGEMNGKMFAGKPLYVALAQRKEERRARLQAQFSQMRP-VAIT-PS 417
Query: 312 KAPKKPAY 319
AP+ P Y
Sbjct: 418 VAPRMPLY 425
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 79/279 (28%), Positives = 133/279 (47%), Gaps = 23/279 (8%)
Query: 21 GARSNKENNK-VYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFA 78
G +N NN + L+V +L+ +V++ L + F + G + VRV R+ S G+
Sbjct: 20 GGVANAPNNANQFVTTSLYVGDLDQNVNDSQLYDLFNQVGQVVSVRVCRDLTTRRSLGYG 79
Query: 79 IIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNL 138
+ F+ P +A +A +N + ++ + I + P R +F+KNL
Sbjct: 80 YVNFSNPQDAARALDVLNFTPLNNRSIRIMYSHRDPSLRKSGTA---------NIFIKNL 130
Query: 139 VETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQH 198
+ +D + L F FG I+ KI D +G SKG+GF+QF + +AA+ AI ++NG +I
Sbjct: 131 DKAIDHKALHDTFSSFGLILSCKIATDASGLSKGYGFVQFDNEEAAQNAIDKLNGMLIND 190
Query: 199 NSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSS 258
+V G + + + L + N ++V NL + + E F +GTITS+
Sbjct: 191 KQVYV-------GHFLRKQDRENALSKTKFNNVYVKNLSESTTDEELMINFGEYGTITSA 243
Query: 259 SLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSK 292
++ D + GF+ F P A AV +NG F K
Sbjct: 244 LIMRDADGKSRCFGFVNFENPDDAAKAVEGLNGKKFDDK 282
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 95/182 (52%), Gaps = 7/182 (3%)
Query: 33 KENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKAR 92
K N ++V NL S ++ L+ F ++GT+ + R+ + +SR F + F P +A KA
Sbjct: 212 KFNNVYVKNLSESTTDEELMINFGEYGTITSALIMRDADGKSRCFGFVNFENPDDAAKAV 271
Query: 93 VEMNGHLIGSKPVIITFVELKP-------GQRSKPVGPEEKQYKKDKVFVKNLVETVDEE 145
+NG K + + K G+ + + +Y +++KNL +T+ +E
Sbjct: 272 EGLNGKKFDDKEWYVGKAQKKSEREQELKGRFEQSIKEAADKYPGLNLYLKNLDDTISDE 331
Query: 146 ELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL 205
+LK F +G I K++RD G S+G GF+ F + + A +A+ EMNG+M +V+L
Sbjct: 332 KLKEMFADYGTITSCKVMRDPTGISRGSGFVAFSTPEEATRALGEMNGKMFAGKPLYVAL 391
Query: 206 AE 207
A+
Sbjct: 392 AQ 393
>gi|169622264|ref|XP_001804541.1| hypothetical protein SNOG_14351 [Phaeosphaeria nodorum SN15]
gi|187608896|sp|Q0U1G2.3|PABP_PHANO RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|160704734|gb|EAT78222.2| hypothetical protein SNOG_14351 [Phaeosphaeria nodorum SN15]
Length = 744
Score = 130 bits (327), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 84/266 (31%), Positives = 131/266 (49%), Gaps = 20/266 (7%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+PSV L F G + +RV R+ S G+A + +N+ + +KA E+
Sbjct: 50 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKALEEL 109
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N +I KP I + + P R G VF+KNL +D + L F FG
Sbjct: 110 NYTVIKGKPCRIMWSQRDPALRKTGQG---------NVFIKNLDHAIDNKALHDTFAAFG 160
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ +DE G SKG+GF+ + + +AA AI +NG ++ FV +P K+
Sbjct: 161 NILSCKVAQDELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFV--GHHIPKKERM 218
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIE 270
K + A I+V N+ ++ + +F ELF + G ITS+S+ D + GF+
Sbjct: 219 SKFEE---MKANFTNIYVKNIDLDVTDEDFRELFEKHGDITSASIARDDQGKSRGFGFVN 275
Query: 271 FIMPKHATHAVSTMNGHVFKSKPLKV 296
+I + A AV +N FK + L V
Sbjct: 276 YIRHEAAAVAVDHLNDIEFKGQKLYV 301
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 69/263 (26%), Positives = 130/263 (49%), Gaps = 18/263 (6%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK W + D R + N + + NL+ ++DN+AL + F FG +
Sbjct: 115 KGKPCRIMWSQ---RDPALRKTGQGN-------VFIKNLDHAIDNKALHDTFAAFGNILS 164
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+VA+++ S+G+ + + T A A +NG L+ K V + K + SK
Sbjct: 165 CKVAQDELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKERMSKF--- 221
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
EE + ++VKN+ V +E+ + F K G+I I RD+ GKS+GFGF+ + ++A
Sbjct: 222 EEMKANFTNIYVKNIDLDVTDEDFRELFEKHGDITSASIARDDQGKSRGFGFVNYIRHEA 281
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAEIVPGK--KVFPKVKPPLLQPARKNK---IFVANLPS 238
A A+ +N + +V A+ + ++ + + L+ K + +++ NL
Sbjct: 282 AAVAVDHLNDIEFKGQKLYVGRAQKKHEREEELRKQYEAARLEKQSKYQGVNLYIKNLND 341
Query: 239 NINNSEFEELFARFGTITSSSLV 261
++++ + ++F FGTITS+ ++
Sbjct: 342 DVDDEKLRDMFTPFGTITSAKVI 364
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 54/232 (23%), Positives = 96/232 (41%), Gaps = 62/232 (26%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
++V N++ V ++ F+K G + +AR+ +SRGF + + A A +N
Sbjct: 231 IYVKNIDLDVTDEDFRELFEKHGDITSASIARDDQGKSRGFGFVNYIRHEAAAVAVDHLN 290
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPE------EKQ--YKKDKVFVKNLVETVDEEELK 148
+ + + + K +R + + + EKQ Y+ +++KNL + VD+E+L+
Sbjct: 291 DIEFKGQKLYVGRAQ-KKHEREEELRKQYEAARLEKQSKYQGVNLYIKNLNDDVDDEKLR 349
Query: 149 SHFIKFGNIIEVKIV----------------------------------RDENG------ 168
F FG I K++ ++NG
Sbjct: 350 DMFTPFGTITSAKVILRDEEKKDEEEKEVKEEKKEDEKKEDEEAKEGSSSEQNGEDTKAG 409
Query: 169 -------------KSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
KSKGFGF+ F + A KA+ EMN +MI+ +V+LA+
Sbjct: 410 DKVTIKGEKKILGKSKGFGFVCFSNPDEATKAVTEMNQKMIEGKPLYVALAQ 461
Score = 38.5 bits (88), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 74 SRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELK 113
S+GF + F+ P EA KA EMN +I KP+ + + K
Sbjct: 424 SKGFGFVCFSNPDEATKAVTEMNQKMIEGKPLYVALAQRK 463
>gi|449446375|ref|XP_004140947.1| PREDICTED: polyadenylate-binding protein 3-like [Cucumis sativus]
Length = 652
Score = 130 bits (327), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 86/278 (30%), Positives = 153/278 (55%), Gaps = 23/278 (8%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+DN+AL + F FGT+ +VA + N +S+G+ + F + A+ + ++NG
Sbjct: 127 IKNLDLSIDNKALRDTFAAFGTVLSCKVAVDSNGQSKGYGFVQFESEESAEISIEKLNGM 186
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ K V + ++ +R + G Q+ V+VKNL ET +++LK+ F G I
Sbjct: 187 LLNDKQVYVGHF-IRHQERIRANG---SQFTN--VYVKNLPETTTDDDLKNLFAPHGTIT 240
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNST-FVSLAEIVPGKKVFPK 217
++ D NGKSK FGF+ F + +A A+ +++G ++ + T +V A+ ++ K
Sbjct: 241 SAIVMTDSNGKSKCFGFVNFQNTDSAAAAVEKLDGTVLGDDKTLYVGRAQRKAEREAELK 300
Query: 218 VKPPLLQPARKNK--------IFVANLPSNINNSEFEELFARFGTITSSSLVSDKH---- 265
K + RK++ +++ NL +I++ + +ELF+ +GTITS ++ D+H
Sbjct: 301 AK---FEQERKSRFEKLQGANLYIKNLDDHIDDEKLKELFSEYGTITSCKVMLDQHGLSK 357
Query: 266 -IGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ F P AT A++ MNG + KPL V ++ K
Sbjct: 358 GSGFVAFSSPDEATKALNEMNGKMKGRKPLYVAVAQRK 395
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 72/264 (27%), Positives = 132/264 (50%), Gaps = 23/264 (8%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKND-ESRGFAIIVFNTPAEAKK 90
+ + L+V +L+ SV+ L+ F + + +RV R++ +S G+A + F++ +A
Sbjct: 32 FLSSSLYVGDLDQSVNEGQLLELFGQVAQVVSIRVCRDQTRRQSLGYAYVNFSSHQDAVN 91
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A +N + KP+ I P R VF+KNL ++D + L+
Sbjct: 92 AMEHLNFTPVNGKPIRIMISNRDPSIRKSGYA---------NVFIKNLDLSIDNKALRDT 142
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVP 210
F FG ++ K+ D NG+SKG+GF+QF S ++AE +I ++NG ++ +V +
Sbjct: 143 FAAFGTVLSCKVAVDSNGQSKGYGFVQFESEESAEISIEKLNGMLLNDKQVYV--GHFIR 200
Query: 211 GKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KH 265
++ +++ ++ ++V NLP + + + LFA GTITS+ +++D K
Sbjct: 201 HQE---RIR---ANGSQFTNVYVKNLPETTTDDDLKNLFAPHGTITSAIVMTDSNGKSKC 254
Query: 266 IGFIEFIMPKHATHAVSTMNGHVF 289
GF+ F A AV ++G V
Sbjct: 255 FGFVNFQNTDSAAAAVEKLDGTVL 278
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 92/179 (51%), Gaps = 8/179 (4%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
++V NL + + L N F GT+ V + N +S+ F + F A A +++
Sbjct: 215 VYVKNLPETTTDDDLKNLFAPHGTITSAIVMTDSNGKSKCFGFVNFQNTDSAAAAVEKLD 274
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDK--------VFVKNLVETVDEEELK 148
G ++G + + +R + + +Q +K + +++KNL + +D+E+LK
Sbjct: 275 GTVLGDDKTLYVGRAQRKAEREAELKAKFEQERKSRFEKLQGANLYIKNLDDHIDDEKLK 334
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
F ++G I K++ D++G SKG GF+ F S A KA+ EMNG+M +V++A+
Sbjct: 335 ELFSEYGTITSCKVMLDQHGLSKGSGFVAFSSPDEATKALNEMNGKMKGRKPLYVAVAQ 393
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 46/77 (59%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L++ NL+ +D++ L F ++GT+ +V +++ S+G + F++P EA KA EMN
Sbjct: 319 LYIKNLDDHIDDEKLKELFSEYGTITSCKVMLDQHGLSKGSGFVAFSSPDEATKALNEMN 378
Query: 97 GHLIGSKPVIITFVELK 113
G + G KP+ + + K
Sbjct: 379 GKMKGRKPLYVAVAQRK 395
>gi|326492626|dbj|BAJ90169.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326511122|dbj|BAJ87575.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 663
Score = 130 bits (327), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 91/278 (32%), Positives = 144/278 (51%), Gaps = 18/278 (6%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S+DN+AL + F FG + +VA + ES+G+ + + A+ A E+N
Sbjct: 132 IFIKNLDKSIDNKALYDTFSAFGNILSCKVATEMSGESKGYGFVQYEQDESAQNAINELN 191
Query: 97 GHLIGSKPVIIT-FVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
G L+ K V + FV + +R G K + V+VKNL E+ E+ LK F FG
Sbjct: 192 GMLLNDKKVYVGPFVRKQ--ERENVFGSP----KFNNVYVKNLSESTTEDNLKELFGNFG 245
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEI-----VP 210
I V +VR ++GKS+ FGF+ F + A A+ ++NG+ +V A+ +
Sbjct: 246 PITSVIVVRADDGKSRCFGFVNFENPDDAVHAVEDLNGKKFDDKELYVGRAQKKSEREMQ 305
Query: 211 GKKVFPKVKPPLLQPARKNKIFVANLPSNINNSE-FEELFARFGTITSSSLVSD-----K 264
K+ F K + +++ NL ++++ E +ELFA FGTITS ++ D K
Sbjct: 306 LKESFEKSNKETADRNQGTNLYLKNLDGSVDDDEKLKELFAEFGTITSCKVMRDSNGVNK 365
Query: 265 HIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ F + AT A+ MNG + SKPL V L+ K
Sbjct: 366 GSGFVAFKSSEDATRALVAMNGKMVGSKPLYVALAQRK 403
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 82/266 (30%), Positives = 134/266 (50%), Gaps = 22/266 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDE-SRGFAIIVFNTPAEAKKARVEM 95
L+V +L+ SV + L + F + G++ VRV R+ N S G+A + F++PA+A +A +
Sbjct: 44 LYVGDLDVSVQDAQLFDVFSQVGSVVSVRVCRDVNTRMSLGYAYVNFSSPADAARALEML 103
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N + KP+ I + P R +F+KNL +++D + L F FG
Sbjct: 104 NFTPVNGKPIRIMYSNRDPSSRKSGAA---------NIFIKNLDKSIDNKALYDTFSAFG 154
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ + +G+SKG+GF+Q+ ++A+ AI E+NG ++ +V G V
Sbjct: 155 NILSCKVATEMSGESKGYGFVQYEQDESAQNAINELNGMLLNDKKVYV-------GPFVR 207
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS-----DKHIGFIE 270
+ + + + N ++V NL + +ELF FG ITS +V + GF+
Sbjct: 208 KQERENVFGSPKFNNVYVKNLSESTTEDNLKELFGNFGPITSVIVVRADDGKSRCFGFVN 267
Query: 271 FIMPKHATHAVSTMNGHVFKSKPLKV 296
F P A HAV +NG F K L V
Sbjct: 268 FENPDDAVHAVEDLNGKKFDDKELYV 293
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 94/183 (51%), Gaps = 8/183 (4%)
Query: 33 KENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKAR 92
K N ++V NL S L F FG + V V R + +SR F + F P +A A
Sbjct: 219 KFNNVYVKNLSESTTEDNLKELFGNFGPITSVIVVRADDGKSRCFGFVNFENPDDAVHAV 278
Query: 93 VEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDK-------VFVKNLVETVDEE 145
++NG K + + + K + + EK K+ +++KNL +VD++
Sbjct: 279 EDLNGKKFDDKELYVGRAQKKSEREMQLKESFEKSNKETADRNQGTNLYLKNLDGSVDDD 338
Query: 146 E-LKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVS 204
E LK F +FG I K++RD NG +KG GF+ F S + A +A++ MNG+M+ +V+
Sbjct: 339 EKLKELFAEFGTITSCKVMRDSNGVNKGSGFVAFKSSEDATRALVAMNGKMVGSKPLYVA 398
Query: 205 LAE 207
LA+
Sbjct: 399 LAQ 401
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 57/98 (58%), Gaps = 1/98 (1%)
Query: 23 RSNKENNKVYKENELHVNNLEPSVDNQALINE-FKKFGTLRDVRVARNKNDESRGFAIIV 81
+SNKE + L++ NL+ SVD+ + E F +FGT+ +V R+ N ++G +
Sbjct: 312 KSNKETADRNQGTNLYLKNLDGSVDDDEKLKELFAEFGTITSCKVMRDSNGVNKGSGFVA 371
Query: 82 FNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSK 119
F + +A +A V MNG ++GSKP+ + + K +R++
Sbjct: 372 FKSSEDATRALVAMNGKMVGSKPLYVALAQRKEERRAR 409
>gi|302767104|ref|XP_002966972.1| hypothetical protein SELMODRAFT_168822 [Selaginella moellendorffii]
gi|300164963|gb|EFJ31571.1| hypothetical protein SELMODRAFT_168822 [Selaginella moellendorffii]
Length = 654
Score = 130 bits (327), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 90/279 (32%), Positives = 147/279 (52%), Gaps = 22/279 (7%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S+DN+AL + F FG + ++A +++ S+G+ + F T A A ++N
Sbjct: 128 IFIKNLDESIDNKALHDTFIAFGPILSCKIA-HQDGRSKGYGFVHFETDEAANLAIEKVN 186
Query: 97 G-HLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
G L+G K + FV K R G + K VFVKNL + EEE+K HF FG
Sbjct: 187 GMQLVGKKVFVAKFV--KRSDRLAATG----ETKFTNVFVKNLDPEMAEEEIKEHFSTFG 240
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-------I 208
I V I++DEN KSKGFGF+ F +AA A+ MN + + +V A+ I
Sbjct: 241 VITNVVIMKDENDKSKGFGFVNFDDPEAARAAVETMNNSQLGSRTIYVGRAQKKAEREQI 300
Query: 209 VPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----- 263
+ ++ F + + Q + ++V NL +I++ ++ F+R+G ITS+ ++ D
Sbjct: 301 L--RRQFEEKRMEQFQKYQGANLYVKNLDDSIDDETLKQEFSRYGNITSAKVMRDEKGIS 358
Query: 264 KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
K GF+ F P+ A+ A + NG + KP+ V ++ K
Sbjct: 359 KGFGFVCFTSPEEASRAATETNGLMINGKPIYVAMAQRK 397
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 80/266 (30%), Positives = 127/266 (47%), Gaps = 23/266 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L+ +V L F + G + VRV R+ S G+ + +++ A+A +A +
Sbjct: 40 LYVGDLDETVAETQLFTIFSQMGLVTSVRVCRDAVTRRSLGYGYVNYSSGADAVRAMEAL 99
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N I K + I + P R VG +F+KNL E++D + L FI FG
Sbjct: 100 NYTPINGKTIRIMWSHRDPSTRKSGVG---------NIFIKNLDESIDNKALHDTFIAFG 150
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
I+ KI ++G+SKG+GF+ F + +AA AI ++NG + FV+ K V
Sbjct: 151 PILSCKIAH-QDGRSKGYGFVHFETDEAANLAIEKVNGMQLVGKKVFVA-------KFVK 202
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIE 270
+ + +FV NL + E +E F+ FG IT+ ++ D K GF+
Sbjct: 203 RSDRLAATGETKFTNVFVKNLDPEMAEEEIKEHFSTFGVITNVVIMKDENDKSKGFGFVN 262
Query: 271 FIMPKHATHAVSTMNGHVFKSKPLKV 296
F P+ A AV TMN S+ + V
Sbjct: 263 FDDPEAARAAVETMNNSQLGSRTIYV 288
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 48/82 (58%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L+V NL+ S+D++ L EF ++G + +V R++ S+GF + F +P EA +A
Sbjct: 316 YQGANLYVKNLDDSIDDETLKQEFSRYGNITSAKVMRDEKGISKGFGFVCFTSPEEASRA 375
Query: 92 RVEMNGHLIGSKPVIITFVELK 113
E NG +I KP+ + + K
Sbjct: 376 ATETNGLMINGKPIYVAMAQRK 397
>gi|326526505|dbj|BAJ97269.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 663
Score = 130 bits (327), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 91/278 (32%), Positives = 144/278 (51%), Gaps = 18/278 (6%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S+DN+AL + F FG + +VA + ES+G+ + + A+ A E+N
Sbjct: 132 IFIKNLDKSIDNKALYDTFSAFGNILSCKVATEMSGESKGYGFVQYEQDESAQNAINELN 191
Query: 97 GHLIGSKPVIIT-FVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
G L+ K V + FV + +R G K + V+VKNL E+ E+ LK F FG
Sbjct: 192 GMLLNDKKVYVGPFVRKQ--ERENVFGSP----KFNNVYVKNLSESTTEDNLKELFGNFG 245
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEI-----VP 210
I V +VR ++GKS+ FGF+ F + A A+ ++NG+ +V A+ +
Sbjct: 246 PITSVIVVRADDGKSRCFGFVNFENPDDAVHAVEDLNGKKFDDKELYVGRAQKKSEREMQ 305
Query: 211 GKKVFPKVKPPLLQPARKNKIFVANLPSNINNSE-FEELFARFGTITSSSLVSD-----K 264
K+ F K + +++ NL ++++ E +ELFA FGTITS ++ D K
Sbjct: 306 LKESFEKSNKETADRNQGTNLYLKNLDGSVDDDEKLKELFAEFGTITSCKVMRDSNGVNK 365
Query: 265 HIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ F + AT A+ MNG + SKPL V L+ K
Sbjct: 366 GSGFVAFKSSEDATRALVAMNGKMVGSKPLYVALAQRK 403
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 82/266 (30%), Positives = 134/266 (50%), Gaps = 22/266 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDE-SRGFAIIVFNTPAEAKKARVEM 95
L+V +L+ SV + L + F + G++ VRV R+ N S G+A + F++PA+A +A +
Sbjct: 44 LYVGDLDVSVQDAQLFDVFSQVGSVVSVRVCRDVNTRMSLGYAYVNFSSPADAARALEML 103
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N + KP+ I + P R +F+KNL +++D + L F FG
Sbjct: 104 NFTPVNGKPIRIMYSNRDPSSRKSGAA---------NIFIKNLDKSIDNKALYDTFSAFG 154
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ + +G+SKG+GF+Q+ ++A+ AI E+NG ++ +V G V
Sbjct: 155 NILSCKVATEMSGESKGYGFVQYEQDESAQNAINELNGMLLNDKKVYV-------GPFVR 207
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS-----DKHIGFIE 270
+ + + + N ++V NL + +ELF FG ITS +V + GF+
Sbjct: 208 KQERENVFGSPKFNNVYVKNLSESTTEDNLKELFGNFGPITSVIVVRADDGKSRCFGFVN 267
Query: 271 FIMPKHATHAVSTMNGHVFKSKPLKV 296
F P A HAV +NG F K L V
Sbjct: 268 FENPDDAVHAVEDLNGKKFDDKELYV 293
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 94/183 (51%), Gaps = 8/183 (4%)
Query: 33 KENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKAR 92
K N ++V NL S L F FG + V V R + +SR F + F P +A A
Sbjct: 219 KFNNVYVKNLSESTTEDNLKELFGNFGPITSVIVVRADDGKSRCFGFVNFENPDDAVHAV 278
Query: 93 VEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDK-------VFVKNLVETVDEE 145
++NG K + + + K + + EK K+ +++KNL +VD++
Sbjct: 279 EDLNGKKFDDKELYVGRAQKKSEREMQLKESFEKSNKETADRNQGTNLYLKNLDGSVDDD 338
Query: 146 E-LKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVS 204
E LK F +FG I K++RD NG +KG GF+ F S + A +A++ MNG+M+ +V+
Sbjct: 339 EKLKELFAEFGTITSCKVMRDSNGVNKGSGFVAFKSSEDATRALVAMNGKMVGSKPLYVA 398
Query: 205 LAE 207
LA+
Sbjct: 399 LAQ 401
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 57/98 (58%), Gaps = 1/98 (1%)
Query: 23 RSNKENNKVYKENELHVNNLEPSVDNQALINE-FKKFGTLRDVRVARNKNDESRGFAIIV 81
+SNKE + L++ NL+ SVD+ + E F +FGT+ +V R+ N ++G +
Sbjct: 312 KSNKETADRNQGTNLYLKNLDGSVDDDEKLKELFAEFGTITSCKVMRDSNGVNKGSGFVA 371
Query: 82 FNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSK 119
F + +A +A V MNG ++GSKP+ + + K +R++
Sbjct: 372 FKSSEDATRALVAMNGKMVGSKPLYVALAQRKEERRAR 409
>gi|400597582|gb|EJP65312.1| polyadenylate-binding protein [Beauveria bassiana ARSEF 2860]
Length = 736
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 81/268 (30%), Positives = 131/268 (48%), Gaps = 24/268 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+PSV L F + G + +RV R+ S G+A + +N+ + +KA E+
Sbjct: 57 LYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTPDGEKALEEL 116
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI +P I + + P R G VF+KNL +D + L F FG
Sbjct: 117 NYTLIKGRPCRIMWSQRDPALRKTGQG---------NVFIKNLDVAIDNKALHDTFAAFG 167
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ +DENG SKG+GF+ + + +AA++AI +NG ++ +V G +
Sbjct: 168 NILSCKVAQDENGSSKGYGFVHYETDEAAQQAIKHVNGMLLNEKKVYV-------GHHIP 220
Query: 216 PKVKPPLLQPARKN--KIFVANLPSNINNSEFEELFARFGTITSSSLVSDKH-----IGF 268
K + + + N ++V N+ + + EF ELF R G +TSSS+ ++ GF
Sbjct: 221 KKDRQSKFEEMKANFTNVYVKNISPEVTDDEFRELFERHGDVTSSSIAREQDGKSRGFGF 280
Query: 269 IEFIMPKHATHAVSTMNGHVFKSKPLKV 296
+ F + A AV +N + L V
Sbjct: 281 VNFTTHEAAAKAVEELNNKDLHGQELYV 308
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 70/263 (26%), Positives = 138/263 (52%), Gaps = 18/263 (6%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KG+ W + D R + N + + NL+ ++DN+AL + F FG +
Sbjct: 122 KGRPCRIMWSQ---RDPALRKTGQGN-------VFIKNLDVAIDNKALHDTFAAFGNILS 171
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+VA+++N S+G+ + + T A++A +NG L+ K V + K ++SK
Sbjct: 172 CKVAQDENGSSKGYGFVHYETDEAAQQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKF--- 228
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
EE + V+VKN+ V ++E + F + G++ I R+++GKS+GFGF+ F +++A
Sbjct: 229 EEMKANFTNVYVKNISPEVTDDEFRELFERHGDVTSSSIAREQDGKSRGFGFVNFTTHEA 288
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAEIVPGK--KVFPKVKPPLLQPARKNK---IFVANLPS 238
A KA+ E+N + + +V A+ + ++ + ++ A K + +++ NL
Sbjct: 289 AAKAVEELNNKDLHGQELYVGRAQKKHEREEELRKSYEAARIEKASKYQGVNLYIKNLDD 348
Query: 239 NINNSEFEELFARFGTITSSSLV 261
++++ + +FA FG ITS+ ++
Sbjct: 349 DVDDDKLRIMFAEFGPITSAKVM 371
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/227 (24%), Positives = 94/227 (41%), Gaps = 57/227 (25%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
++V N+ P V + F++ G + +AR ++ +SRGF + F T A KA E+N
Sbjct: 238 VYVKNISPEVTDDEFRELFERHGDVTSSSIAREQDGKSRGFGFVNFTTHEAAAKAVEELN 297
Query: 97 GHLIGSKPVIITFV--------ELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELK 148
+ + + + EL+ + + K Y+ +++KNL + VD+++L+
Sbjct: 298 NKDLHGQELYVGRAQKKHEREEELRKSYEAARIEKASK-YQGVNLYIKNLDDDVDDDKLR 356
Query: 149 SHFIKFGNIIEVKIVR-----------------------------------DENGKSKG- 172
F +FG I K++R +EN K K
Sbjct: 357 IMFAEFGPITSAKVMRDSPSDDDEEEESKEAEDKDKENKKEEEKKDQNPDDEENDKDKKD 416
Query: 173 ------------FGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
FGF+ F + A KA+ EMN RMI +V+LA+
Sbjct: 417 KKGSKKLGKSKGFGFVCFSNPDDATKAVAEMNQRMINGKPLYVALAQ 463
>gi|22329932|ref|NP_174676.2| poly(A) binding protein 1 [Arabidopsis thaliana]
gi|332193555|gb|AEE31676.1| poly(A) binding protein 1 [Arabidopsis thaliana]
Length = 407
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 92/291 (31%), Positives = 149/291 (51%), Gaps = 29/291 (9%)
Query: 28 NNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAE 87
+N++ + V NL+ S+DN+ L + F FG + +VAR+ + S+G+ + F +
Sbjct: 24 SNRMSGRGNVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDASGVSKGYGFVQFYSDLS 83
Query: 88 AKKARVEMNGHLIGSKPV-IITFVELKPGQRSKPVGPEEKQYKKDKVF----VKNLVETV 142
A NG LI ++ + + FV Q+ K +VF VKNLVET
Sbjct: 84 VYTACNFHNGTLIRNQHIHVCPFV-------------SRGQWDKSRVFTNVYVKNLVETA 130
Query: 143 DEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTF 202
+ +LK F +FG I +++D GKS+ FGF+ F +AA AI +MNG ++
Sbjct: 131 TDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAIEKMNGVVVDEKELH 190
Query: 203 VSLAEIVPGKKVFPKVKPPLLQPARKNK------IFVANLPSNINNSEFEELFARFGTIT 256
V A+ + K K L + R K ++V NL +++N++ EELF+ FGTIT
Sbjct: 191 VGRAQRKTNRTEDLKAKFELEKIIRDMKTRKGMNLYVKNLDDSVDNTKLEELFSEFGTIT 250
Query: 257 SSSLVS-----DKHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
S ++ K +GF+EF + A+ A+ MNG + +KP+ V+L+ K
Sbjct: 251 SCKVMVHSNGISKGVGFVEFSTSEEASKAMLKMNGKMVGNKPIYVSLAQCK 301
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 66/211 (31%), Positives = 98/211 (46%), Gaps = 32/211 (15%)
Query: 95 MNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKF 154
+N + KP+ I F E P R G VFVKNL E++D ++L F F
Sbjct: 4 LNYCKLKGKPMRIMFSERDPSNRMSGRG---------NVFVKNLDESIDNKQLCDMFSAF 54
Query: 155 GNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQ----HNSTFVSLAEIVP 210
G ++ K+ RD +G SKG+GF+QF+S + A NG +I+ H FVS +
Sbjct: 55 GKVLSCKVARDASGVSKGYGFVQFYSDLSVYTACNFHNGTLIRNQHIHVCPFVSRGQW-D 113
Query: 211 GKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KH 265
+VF ++V NL +++ + LF FG ITS+ ++ D +
Sbjct: 114 KSRVF-------------TNVYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSRR 160
Query: 266 IGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
GF+ F + A A+ MNG V K L V
Sbjct: 161 FGFVNFEKAEAAVTAIEKMNGVVVDEKELHV 191
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 100/195 (51%), Gaps = 10/195 (5%)
Query: 22 ARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIV 81
+R + ++V+ ++V NL + + L F +FG + V ++ +SR F +
Sbjct: 108 SRGQWDKSRVF--TNVYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFVN 165
Query: 82 FNTPAEAKKARVEMNGHLIGSKPVIITFVE--------LKPGQRSKPVGPEEKQYKKDKV 133
F A A +MNG ++ K + + + LK + + + K K +
Sbjct: 166 FEKAEAAVTAIEKMNGVVVDEKELHVGRAQRKTNRTEDLKAKFELEKIIRDMKTRKGMNL 225
Query: 134 FVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNG 193
+VKNL ++VD +L+ F +FG I K++ NG SKG GF++F + + A KA+++MNG
Sbjct: 226 YVKNLDDSVDNTKLEELFSEFGTITSCKVMVHSNGISKGVGFVEFSTSEEASKAMLKMNG 285
Query: 194 RMIQHNSTFVSLAEI 208
+M+ + +VSLA+
Sbjct: 286 KMVGNKPIYVSLAQC 300
>gi|330938161|ref|XP_003305701.1| hypothetical protein PTT_18612 [Pyrenophora teres f. teres 0-1]
gi|311317207|gb|EFQ86241.1| hypothetical protein PTT_18612 [Pyrenophora teres f. teres 0-1]
Length = 749
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 82/266 (30%), Positives = 133/266 (50%), Gaps = 20/266 (7%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+PSV L F G + +RV R+ S G+A + +N+ + +KA E+
Sbjct: 50 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKALEEL 109
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N +I KP I + + P R G VF+KNL +D + L F FG
Sbjct: 110 NYTVIKGKPCRIMWSQRDPALRKTGQG---------NVFIKNLDHAIDNKALHDTFAAFG 160
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ +DE G SKG+GF+ + + +AA AI +NG ++ FV +P K+
Sbjct: 161 NILSCKVAQDELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFV--GHHIPKKERM 218
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIE 270
K + A I+V N+ ++++ +F +LF + G ITS+S+ D + GF+
Sbjct: 219 SKFEE---MKANFTNIYVKNIDLDVSDDDFRDLFEKHGDITSASIARDDQGKSRGFGFVN 275
Query: 271 FIMPKHATHAVSTMNGHVFKSKPLKV 296
+I + A+ AV +N F+ + L V
Sbjct: 276 YIKHEAASAAVDALNDTDFRGQKLYV 301
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/265 (26%), Positives = 131/265 (49%), Gaps = 18/265 (6%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK W + D R + N + + NL+ ++DN+AL + F FG +
Sbjct: 115 KGKPCRIMWSQ---RDPALRKTGQGN-------VFIKNLDHAIDNKALHDTFAAFGNILS 164
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+VA+++ S+G+ + + T A A +NG L+ K V + K + SK
Sbjct: 165 CKVAQDELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKERMSKF--- 221
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
EE + ++VKN+ V +++ + F K G+I I RD+ GKS+GFGF+ + ++A
Sbjct: 222 EEMKANFTNIYVKNIDLDVSDDDFRDLFEKHGDITSASIARDDQGKSRGFGFVNYIKHEA 281
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAEIVPGK--KVFPKVKPPLLQPARKNK---IFVANLPS 238
A A+ +N + +V A+ + ++ + + L+ K + +++ NL
Sbjct: 282 ASAAVDALNDTDFRGQKLYVGRAQKKHEREEELRKQYEAARLEKQSKYQGVNLYIKNLND 341
Query: 239 NINNSEFEELFARFGTITSSSLVSD 263
++++ + ++F FGTITS+ ++ D
Sbjct: 342 DVDDEKLRDMFTPFGTITSAKVMRD 366
Score = 44.7 bits (104), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 29/40 (72%)
Query: 168 GKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
GKSKGFGF+ F + A KA+ EMN +MI++ +V+LA+
Sbjct: 423 GKSKGFGFVCFSNPDEATKAVTEMNQKMIENKPLYVALAQ 462
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 54/148 (36%), Gaps = 56/148 (37%)
Query: 20 EGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVAR---------NK 70
E AR K++ Y+ L++ NL VD++ L + F FGT+ +V R +
Sbjct: 319 EAARLEKQSK--YQGVNLYIKNLNDDVDDEKLRDMFTPFGTITSAKVMRDAMPAAGSEDA 376
Query: 71 NDE---------------------------------------------SRGFAIIVFNTP 85
DE S+GF + F+ P
Sbjct: 377 TDEKKDETKEETEKPEEAKDESKEDSDDKKDEKADKVTIKGEKKILGKSKGFGFVCFSNP 436
Query: 86 AEAKKARVEMNGHLIGSKPVIITFVELK 113
EA KA EMN +I +KP+ + + K
Sbjct: 437 DEATKAVTEMNQKMIENKPLYVALAQRK 464
>gi|74199920|dbj|BAE20776.1| unnamed protein product [Mus musculus]
Length = 266
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 92/274 (33%), Positives = 131/274 (47%), Gaps = 37/274 (13%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L P V L +F G + +RV R+ S G+A + F PA+A++A M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADAERALDTM 72
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N +I KPV I + + P R VG VF+KNL +T+D + L F FG
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRRSGVG---------NVFIKNLNKTIDNKALYDTFSAFG 123
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL--------AE 207
NI+ K+V DENG SKG GF+ F + +AAE+AI +MNG ++ FV AE
Sbjct: 124 NILSCKVVSDENG-SKGHGFVHFETEEAAERAIEKMNGMLLNDRKVFVGRFKSQKEREAE 182
Query: 208 IVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD---- 263
+ G K F V ++ N +++ LF RFG I S +++D
Sbjct: 183 LGTGTKEFTNV-------------YIKNFGDRMDDETLNGLFGRFGQILSVKVMTDEGGK 229
Query: 264 -KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
K GF+ F + A AV MNG K + V
Sbjct: 230 SKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYV 263
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 97/168 (57%), Gaps = 4/168 (2%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL ++DN+AL + F FG + +V ++N S+G + F T A++A +MNG
Sbjct: 103 IKNLNKTIDNKALYDTFSAFGNILSCKVVSDENG-SKGHGFVHFETEEAAERAIEKMNGM 161
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ + V + + + +R +G K++ V++KN + +D+E L F +FG I+
Sbjct: 162 LLNDRKVFVGRFKSQK-EREAELGTGTKEFTN--VYIKNFGDRMDDETLNGLFGRFGQIL 218
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLA 206
VK++ DE GKSKGFGF+ F ++ A+KA+ EMNG+ + +V A
Sbjct: 219 SVKVMTDEGGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYVGRA 266
>gi|320591142|gb|EFX03581.1| polyadenylate-binding protein [Grosmannia clavigera kw1407]
Length = 780
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 81/270 (30%), Positives = 136/270 (50%), Gaps = 27/270 (10%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+ SV L F + G + +RV R+ S G+A + +N+ A+ +KA E+
Sbjct: 61 LYVGELDESVTEAMLFELFSQIGPVASIRVCRDAVTRRSLGYAYVNYNSTADGEKALEEL 120
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI ++P I + + P R G +F+KNL +D + L F FG
Sbjct: 121 NYTLIKNRPCRIMWSQRDPALRKTGQG---------NIFIKNLDAAIDNKALHDTFAAFG 171
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKV- 214
NI+ K+ +DE+G SKG+GF+ + + +AA++AI +NG ++ +V +P K
Sbjct: 172 NILSCKVAQDEHGNSKGYGFVHYETDEAAQQAIKHVNGMLLNEKKVYV--GHHIPKKDRQ 229
Query: 215 --FPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKH------I 266
F ++K A I++ NL +++ + EF +LF ++G +TSS++ D+
Sbjct: 230 SKFEEMK------ANYTNIYIKNLHADVTDDEFRKLFEQYGAVTSSTIARDQETGKSRGF 283
Query: 267 GFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
GFI F + A AV +N + L V
Sbjct: 284 GFINFTTHESAAKAVEELNSREIHGQELYV 313
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 69/239 (28%), Positives = 128/239 (53%), Gaps = 15/239 (6%)
Query: 34 ENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARV 93
+ + + NL+ ++DN+AL + F FG + +VA++++ S+G+ + + T A++A
Sbjct: 146 QGNIFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEHGNSKGYGFVHYETDEAAQQAIK 205
Query: 94 EMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIK 153
+NG L+ K V + K ++SK EE + +++KNL V ++E + F +
Sbjct: 206 HVNGMLLNEKKVYVGHHIPKKDRQSK---FEEMKANYTNIYIKNLHADVTDDEFRKLFEQ 262
Query: 154 FGNIIEVKIVRD-ENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGK 212
+G + I RD E GKS+GFGFI F ++++A KA+ E+N R I +V A+ K
Sbjct: 263 YGAVTSSTIARDQETGKSRGFGFINFTTHESAAKAVEELNSREIHGQELYVGRAQK---K 319
Query: 213 KVFPKVKPPLLQPARKNK--------IFVANLPSNINNSEFEELFARFGTITSSSLVSD 263
+ + AR+ K +++ NL +++ + ELFA +G ITS+ ++ +
Sbjct: 320 HEREEELRKSYEAARQEKASKYVGVNLYIKNLDDEVDDEKLRELFAPYGPITSAKVMRE 378
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/229 (24%), Positives = 96/229 (41%), Gaps = 58/229 (25%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
+++ NL V + F+++G + +AR++ +SRGF I F T A KA E+
Sbjct: 242 IYIKNLHADVTDDEFRKLFEQYGAVTSSTIARDQETGKSRGFGFINFTTHESAAKAVEEL 301
Query: 96 NGHLIGSKPVIITFVELKPGQ-----RSKPVGPEEK--QYKKDKVFVKNLVETVDEEELK 148
N I + + + + K + +S +EK +Y +++KNL + VD+E+L+
Sbjct: 302 NSREIHGQELYVGRAQKKHEREEELRKSYEAARQEKASKYVGVNLYIKNLDDEVDDEKLR 361
Query: 149 SHFIKFGNIIEVKIVRDEN----------------------------------------- 167
F +G I K++R+
Sbjct: 362 ELFAPYGPITSAKVMRETASESDEEGKETKETEEVKEVKEEEEKPKVEGAAEGEADASGE 421
Query: 168 ---------GKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
GKSKGFGF+ F + A KA+ EMN RM+ +V++A+
Sbjct: 422 KQAAARPKLGKSKGFGFVCFSNPDDATKAVTEMNQRMVSGKPLYVAIAQ 470
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 31/54 (57%)
Query: 66 VARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSK 119
AR K +S+GF + F+ P +A KA EMN ++ KP+ + + K ++S+
Sbjct: 425 AARPKLGKSKGFGFVCFSNPDDATKAVTEMNQRMVSGKPLYVAIAQKKEVRKSQ 478
>gi|384251873|gb|EIE25350.1| polyadenylate binding protein [Coccomyxa subellipsoidea C-169]
Length = 681
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 85/273 (31%), Positives = 141/273 (51%), Gaps = 16/273 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ +DN+AL + F FGT+ +VA + S+G+ + + A+ A ++N
Sbjct: 125 IFIKNLDKDIDNKALHDTFTAFGTILSCKVATDLAGNSKGYGFVHYEKEEAAQLAIEKVN 184
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G L+ K V + LK +R P +K+ VFVKNL E + +EE++ F + G
Sbjct: 185 GMLLEGKKVFVGPF-LKRTER-----PVDKEQHYTNVFVKNLSENLTDEEVEKMFNEHGM 238
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEI-----VPG 211
+ I++DE GKSKGFGFI F + A A+ +NG+ I + A+
Sbjct: 239 VTSFAIMKDEAGKSKGFGFINFEDAEGAHAAVTALNGKEIDGKELYCGRAQKKAEREAEL 298
Query: 212 KKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHI 266
K+ F +V+ + + ++V NL +++ + FA GTITS+ ++ D K
Sbjct: 299 KQKFDEVRQERIAKYQGMNLYVKNLVDEVDDDQLRAEFAPHGTITSAKVMKDSAGKSKGF 358
Query: 267 GFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299
GF+ + P+ AT AV+ MNG + KP+ V L+
Sbjct: 359 GFVCYSSPEEATRAVTEMNGKMLLGKPMYVALA 391
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 77/277 (27%), Positives = 126/277 (45%), Gaps = 34/277 (12%)
Query: 35 NELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARV 93
+ L+V +L+ V L F + G + +RV R+ S G+A + +N+ +A A
Sbjct: 24 SSLYVGDLDRDVTEAQLFEIFSQIGPVASIRVCRDAVTRRSLGYAYVNYNSALDAAAAER 83
Query: 94 E---------MNGHLIG--SKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETV 142
+ G G SKP+ I + P R VG +F+KNL + +
Sbjct: 84 AIEALNYTSVIPGKEGGEDSKPMRIMWSHRDPAFRKSGVG---------NIFIKNLDKDI 134
Query: 143 DEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTF 202
D + L F FG I+ K+ D G SKG+GF+ + +AA+ AI ++NG +++ F
Sbjct: 135 DNKALHDTFTAFGTILSCKVATDLAGNSKGYGFVHYEKEEAAQLAIEKVNGMLLEGKKVF 194
Query: 203 VSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
V + + P+ + +FV NL N+ + E E++F G +TS +++
Sbjct: 195 VG--------PFLKRTERPVDKEQHYTNVFVKNLSENLTDEEVEKMFNEHGMVTSFAIMK 246
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
D K GFI F + A AV+ +NG K L
Sbjct: 247 DEAGKSKGFGFINFEDAEGAHAAVTALNGKEIDGKEL 283
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 100/194 (51%), Gaps = 11/194 (5%)
Query: 23 RSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVF 82
R+ + +K + V NL ++ ++ + F + G + + +++ +S+GF I F
Sbjct: 201 RTERPVDKEQHYTNVFVKNLSENLTDEEVEKMFNEHGMVTSFAIMKDEAGKSKGFGFINF 260
Query: 83 NTPAEAKKARVEMNGHLIGSKPVIITFV--------ELKPGQRSKPVGPEE-KQYKKDKV 133
A A +NG I K + ELK Q+ V E +Y+ +
Sbjct: 261 EDAEGAHAAVTALNGKEIDGKELYCGRAQKKAEREAELK--QKFDEVRQERIAKYQGMNL 318
Query: 134 FVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNG 193
+VKNLV+ VD+++L++ F G I K+++D GKSKGFGF+ + S + A +A+ EMNG
Sbjct: 319 YVKNLVDEVDDDQLRAEFAPHGTITSAKVMKDSAGKSKGFGFVCYSSPEEATRAVTEMNG 378
Query: 194 RMIQHNSTFVSLAE 207
+M+ +V+LA+
Sbjct: 379 KMLLGKPMYVALAQ 392
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 46/82 (56%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L+V NL VD+ L EF GT+ +V ++ +S+GF + +++P EA +A
Sbjct: 313 YQGMNLYVKNLVDEVDDDQLRAEFAPHGTITSAKVMKDSAGKSKGFGFVCYSSPEEATRA 372
Query: 92 RVEMNGHLIGSKPVIITFVELK 113
EMNG ++ KP+ + + +
Sbjct: 373 VTEMNGKMLLGKPMYVALAQRR 394
>gi|297821595|ref|XP_002878680.1| PAB4 binding protein 4 [Arabidopsis lyrata subsp. lyrata]
gi|297324519|gb|EFH54939.1| PAB4 binding protein 4 [Arabidopsis lyrata subsp. lyrata]
Length = 655
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 89/285 (31%), Positives = 142/285 (49%), Gaps = 33/285 (11%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L V NL+ SVDN+ L F GT+ +VA + +SRG+ + F+T AK A ++N
Sbjct: 131 LFVKNLDKSVDNKTLHETFSGCGTIVSCKVAADHMGQSRGYGFVQFDTEDSAKNAIEKLN 190
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGP----EEKQYKKDK-----VFVKNLVETVDEEEL 147
G ++ K + VGP EE++ DK V+VKNL E ++EL
Sbjct: 191 GKVLNDKQIF--------------VGPFLRKEERESAADKMKFTNVYVKNLSEVTTDDEL 236
Query: 148 KSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
K+ F ++G+I ++RD +GKS+ FGF+ F + + A +A+ +NG+ +V A+
Sbjct: 237 KTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALNGKKFDDKEWYVGKAQ 296
Query: 208 IVPGKKVFPKVKPPLLQPARKNK-----IFVANLPSNINNSEFEELFARFGTITSSSLVS 262
+++ + NK ++V NL + + + ELFA FGTITS ++
Sbjct: 297 KKSERELELSRRYEQGSSDAGNKFDGLNLYVKNLDDTVTDEKLRELFAEFGTITSCKVMR 356
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
D K GF+ F A+ ++ MNG + KPL V L+ K
Sbjct: 357 DPSGTSKGSGFVAFSAASEASRVLNEMNGKMVGGKPLYVALAQRK 401
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/262 (26%), Positives = 128/262 (48%), Gaps = 22/262 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L+ +V + L + F + + VRV R+ + S G+ + ++ +A+KA ++
Sbjct: 43 LYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTEDAEKAMQKL 102
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N + K + IT+ R VG +FVKNL ++VD + L F G
Sbjct: 103 NYSTLNGKMIRITYSSRDSSARRSGVG---------NLFVKNLDKSVDNKTLHETFSGCG 153
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
I+ K+ D G+S+G+GF+QF + +A+ AI ++NG+++ FV G +
Sbjct: 154 TIVSCKVAADHMGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFV-------GPFLR 206
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIE 270
+ + + ++V NL + E + F ++G+I+S+ ++ D + GF+
Sbjct: 207 KEERESAADKMKFTNVYVKNLSEVTTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVN 266
Query: 271 FIMPKHATHAVSTMNGHVFKSK 292
F P+ A AV +NG F K
Sbjct: 267 FENPEDAARAVEALNGKKFDDK 288
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 49/83 (59%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L+V NL+ +V ++ L F +FGT+ +V R+ + S+G + F+ +EA + EMN
Sbjct: 325 LYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMN 384
Query: 97 GHLIGSKPVIITFVELKPGQRSK 119
G ++G KP+ + + K +R+K
Sbjct: 385 GKMVGGKPLYVALAQRKEERRAK 407
>gi|449494063|ref|XP_004159436.1| PREDICTED: polyadenylate-binding protein 3-like [Cucumis sativus]
Length = 652
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 83/275 (30%), Positives = 151/275 (54%), Gaps = 17/275 (6%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+DN+AL + F FGT+ +VA + N +S+G+ + F + A+ + ++NG
Sbjct: 127 IKNLDLSIDNKALRDTFAAFGTVLSCKVAVDSNGQSKGYGFVQFESEESAEISIEKLNGM 186
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ K V + ++ +R + G Q+ V+VKNL ET +++LK+ F G I
Sbjct: 187 LLNDKQVYVGHF-IRHQERIRANG---SQFTN--VYVKNLPETTTDDDLKNLFAPHGTIT 240
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNST-FVSLAEIVPGKKV--- 214
++ D NGKSK FGF+ F + +A A+ +++G ++ + T +V A+ ++
Sbjct: 241 SAIVMTDSNGKSKCFGFVNFQNTDSAAAAVEKLDGTVLGDDKTLYVGRAQRKAEREAELR 300
Query: 215 --FPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKH-----IG 267
F + + + + +++ NL +I++ + +ELF+ +GTITS ++ D+H G
Sbjct: 301 AKFEQERKSRFEKLQGANLYIKNLDDHIDDEKLKELFSEYGTITSCKVMLDQHGLSKGSG 360
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F+ F P AT A++ MNG + KPL V ++ K
Sbjct: 361 FVAFSSPDEATKALNEMNGKMKGRKPLYVAVAQRK 395
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 72/264 (27%), Positives = 132/264 (50%), Gaps = 23/264 (8%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKND-ESRGFAIIVFNTPAEAKK 90
+ + L+V +L+ SV+ L+ F + + +RV R++ +S G+A + F++ +A
Sbjct: 32 FLSSSLYVGDLDQSVNEGQLLELFGQVAQVVSIRVCRDQTRRQSLGYAYVNFSSHQDAVN 91
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A +N + KP+ I P R VF+KNL ++D + L+
Sbjct: 92 AMEHLNFTPVNGKPIRIMISNRDPSIRKSGYA---------NVFIKNLDLSIDNKALRDT 142
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVP 210
F FG ++ K+ D NG+SKG+GF+QF S ++AE +I ++NG ++ +V +
Sbjct: 143 FAAFGTVLSCKVAVDSNGQSKGYGFVQFESEESAEISIEKLNGMLLNDKQVYV--GHFIR 200
Query: 211 GKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KH 265
++ +++ ++ ++V NLP + + + LFA GTITS+ +++D K
Sbjct: 201 HQE---RIR---ANGSQFTNVYVKNLPETTTDDDLKNLFAPHGTITSAIVMTDSNGKSKC 254
Query: 266 IGFIEFIMPKHATHAVSTMNGHVF 289
GF+ F A AV ++G V
Sbjct: 255 FGFVNFQNTDSAAAAVEKLDGTVL 278
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 92/179 (51%), Gaps = 8/179 (4%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
++V NL + + L N F GT+ V + N +S+ F + F A A +++
Sbjct: 215 VYVKNLPETTTDDDLKNLFAPHGTITSAIVMTDSNGKSKCFGFVNFQNTDSAAAAVEKLD 274
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDK--------VFVKNLVETVDEEELK 148
G ++G + + +R + + +Q +K + +++KNL + +D+E+LK
Sbjct: 275 GTVLGDDKTLYVGRAQRKAEREAELRAKFEQERKSRFEKLQGANLYIKNLDDHIDDEKLK 334
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
F ++G I K++ D++G SKG GF+ F S A KA+ EMNG+M +V++A+
Sbjct: 335 ELFSEYGTITSCKVMLDQHGLSKGSGFVAFSSPDEATKALNEMNGKMKGRKPLYVAVAQ 393
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 46/77 (59%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L++ NL+ +D++ L F ++GT+ +V +++ S+G + F++P EA KA EMN
Sbjct: 319 LYIKNLDDHIDDEKLKELFSEYGTITSCKVMLDQHGLSKGSGFVAFSSPDEATKALNEMN 378
Query: 97 GHLIGSKPVIITFVELK 113
G + G KP+ + + K
Sbjct: 379 GKMKGRKPLYVAVAQRK 395
>gi|326474523|gb|EGD98532.1| polyadenylate-binding protein [Trichophyton tonsurans CBS 112818]
Length = 676
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 81/269 (30%), Positives = 131/269 (48%), Gaps = 25/269 (9%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+PSV L F G + +RV R+ S G+A + +N A+ ++A ++
Sbjct: 60 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 119
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI +P I + + P R G VF+KNL +D + L F FG
Sbjct: 120 NYTLIKGRPCRIMWSQRDPALRKTGQG---------NVFIKNLDTAIDNKALHDTFAAFG 170
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ +DE G SKG+GF+ + + +AA AI +NG ++ FV G +
Sbjct: 171 NILSCKVAQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFV-------GHHIA 223
Query: 216 PKVKPPLLQPARKN--KIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIG 267
K + + + N I+V N+ ++ + EF LF ++G ITS++L D + G
Sbjct: 224 KKDRQSKFEEMKANFTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFG 283
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
F+ F + A+ AV +N + K + L V
Sbjct: 284 FVNFSDHEAASAAVEALNEYELKGQKLYV 312
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 125/231 (54%), Gaps = 9/231 (3%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ ++DN+AL + F FG + +VA+++ S+G+ + + T A A +NG
Sbjct: 150 IKNLDTAIDNKALHDTFAAFGNILSCKVAQDEYGNSKGYGFVHYETAEAATNAIKHVNGM 209
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ K V + K ++SK EE + ++VKN+ + V +EE + F K+G I
Sbjct: 210 LLNEKKVFVGHHIAKKDRQSK---FEEMKANFTNIYVKNVEQDVTDEEFRGLFEKYGEIT 266
Query: 159 EVKIVRD-ENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGK--KVF 215
+ RD E GKS+GFGF+ F ++AA A+ +N ++ +V A+ + ++
Sbjct: 267 SATLSRDNETGKSRGFGFVNFSDHEAASAAVEALNEYELKGQKLYVGRAQKKHEREEELR 326
Query: 216 PKVKPPLLQPARKNK---IFVANLPSNINNSEFEELFARFGTITSSSLVSD 263
+ + ++ A K + +++ NL +I++ + ELF+ +G ITS+ ++ +
Sbjct: 327 KQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLRELFSSYGNITSAKVMRE 377
Score = 45.1 bits (105), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 40/77 (51%)
Query: 131 DKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIE 190
DK K ++ E++ KS G K + GKSKGFGF+ F + A KA+ E
Sbjct: 403 DKSEEKGEAKSESEDKSKSEEKTEGKTESAKPEKKHLGKSKGFGFVCFSNPDEASKAVTE 462
Query: 191 MNGRMIQHNSTFVSLAE 207
MN RM+ +V+LA+
Sbjct: 463 MNQRMVHGKPLYVALAQ 479
Score = 39.3 bits (90), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 27/46 (58%)
Query: 74 SRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSK 119
S+GF + F+ P EA KA EMN ++ KP+ + + K ++S+
Sbjct: 442 SKGFGFVCFSNPDEASKAVTEMNQRMVHGKPLYVALAQRKDVRKSQ 487
>gi|449302325|gb|EMC98334.1| hypothetical protein BAUCODRAFT_86883 [Baudoinia compniacensis UAMH
10762]
Length = 802
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 84/267 (31%), Positives = 130/267 (48%), Gaps = 21/267 (7%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+PSV L F G + +RV R+ S G+A + +N+ + ++A E+
Sbjct: 63 LYVGELDPSVTEAMLFELFSSVGQVASIRVCRDAVTRRSLGYAYVNYNSANDGERALEEL 122
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI +P I + + P R G VF+KNL +D + L F FG
Sbjct: 123 NYTLIKGRPCRIMWSQRDPALRKTGHG---------NVFIKNLDGAIDNKALHDTFAAFG 173
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ DE G SKG+GF+ + + +AA +AI +NG ++ FV +P K
Sbjct: 174 NILSCKVAVDELGNSKGYGFVHYETAEAASQAIKSVNGMLLNEKKVFV--GHHIPKKDRM 231
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFI 269
K + A I+V N+ + + + EF ELF ++G ITS+SL D + GF+
Sbjct: 232 SKFEE---MKANFTNIYVKNIETEVTDDEFRELFEKYGEITSASLAHDNETGKSRGFGFV 288
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKV 296
+I + A AV +N F + L V
Sbjct: 289 NYINHEDAYKAVDELNDSDFHGQKLYV 315
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 64/234 (27%), Positives = 119/234 (50%), Gaps = 15/234 (6%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ ++DN+AL + F FG + +VA ++ S+G+ + + T A +A +NG
Sbjct: 153 IKNLDGAIDNKALHDTFAAFGNILSCKVAVDELGNSKGYGFVHYETAEAASQAIKSVNGM 212
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ K V + K + SK EE + ++VKN+ V ++E + F K+G I
Sbjct: 213 LLNEKKVFVGHHIPKKDRMSKF---EEMKANFTNIYVKNIETEVTDDEFRELFEKYGEIT 269
Query: 159 EVKIVRD-ENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPK 217
+ D E GKS+GFGF+ + +++ A KA+ E+N +V A+ ++ +
Sbjct: 270 SASLAHDNETGKSRGFGFVNYINHEDAYKAVDELNDSDFHGQKLYVGRAQKKHEREEELR 329
Query: 218 VKPPLLQPARKNK--------IFVANLPSNINNSEFEELFARFGTITSSSLVSD 263
+ + AR+ K ++V NL +++ E ++F +G ITS+ ++ D
Sbjct: 330 KQ---YEAARQEKSAKYQGVNLYVKNLADEVDDEELRKIFEAYGAITSAKVMRD 380
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 68/137 (49%), Gaps = 8/137 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVAR-NKNDESRGFAIIVFNTPAEAKKARVEM 95
++V N+E V + F+K+G + +A N+ +SRGF + + +A KA E+
Sbjct: 244 IYVKNIETEVTDDEFRELFEKYGEITSASLAHDNETGKSRGFGFVNYINHEDAYKAVDEL 303
Query: 96 NGHLIGSKPVIITFVELKPGQ-----RSKPVGPEEK--QYKKDKVFVKNLVETVDEEELK 148
N + + + + K + + +EK +Y+ ++VKNL + VD+EEL+
Sbjct: 304 NDSDFHGQKLYVGRAQKKHEREEELRKQYEAARQEKSAKYQGVNLYVKNLADEVDDEELR 363
Query: 149 SHFIKFGNIIEVKIVRD 165
F +G I K++RD
Sbjct: 364 KIFEAYGAITSAKVMRD 380
Score = 42.0 bits (97), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 27/40 (67%)
Query: 168 GKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
GKSKGFGF+ F + A KA+ E+N +MI +V+LA+
Sbjct: 439 GKSKGFGFVCFSNPDEATKAVTELNQKMIHGKPLYVALAQ 478
>gi|301787589|ref|XP_002929210.1| PREDICTED: polyadenylate-binding protein 5-like [Ailuropoda
melanoleuca]
Length = 382
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 87/282 (30%), Positives = 152/282 (53%), Gaps = 32/282 (11%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ +DN+AL F FG + +V + N S+G+A + F++ A A +A MN
Sbjct: 108 IFIKNLDKCIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMN 166
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G + ++ V + + P +R+ V ++ + VFVKN + +D+E+LK F +G
Sbjct: 167 GVRLNNRQVYVGRFKF-PEERAAEVRTRDRATFTN-VFVKNFGDDMDDEKLKEIFSGYGP 224
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF- 215
VK++RD +GKSKGFGF+++ +++AA+KA+++++G+ I +V A+ KK+
Sbjct: 225 TESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSINGKVLYVGRAQ----KKIER 280
Query: 216 --------------PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLV 261
K +PP + I++ NL I++ + +E F+ FG+I+ + ++
Sbjct: 281 LAELRRRFERLRLKEKSRPPGVP------IYIKNLDETIDDEKLKEEFSSFGSISRAKVM 334
Query: 262 SD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299
+ K G + F + AT AV MNG SKPL VTL
Sbjct: 335 VEVGQGKGFGVVCFSSFEEATKAVDEMNGRTVGSKPLHVTLG 376
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 78/267 (29%), Positives = 127/267 (47%), Gaps = 26/267 (9%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDES-RGFAIIVFNTPAEAKKARVEMNG 97
V +L+P V L +F+ G LR R+ R+ S G+ + F PA+A+ A MN
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 98 HLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNI 157
LI KP + + + R VG +F+KNL + +D L F FGNI
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVG---------NIFIKNLDKCIDNRALFYLFSAFGNI 132
Query: 158 IEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPK 217
+ K+V D+NG SKG+ ++ F S AA +AI MNG + + +V G+ FP+
Sbjct: 133 LSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYV-------GRFKFPE 184
Query: 218 VKPPLLQP---ARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFI 269
+ ++ A +FV N ++++ + +E+F+ +G S ++ D K GF+
Sbjct: 185 ERAAEVRTRDRATFTNVFVKNFGDDMDDEKLKEIFSGYGPTESVKVIRDASGKSKGFGFV 244
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKV 296
+ + A AV ++G K L V
Sbjct: 245 RYETHEAAQKAVLDLHGKSINGKVLYV 271
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 97/178 (54%), Gaps = 8/178 (4%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ V N +D++ L F +G V+V R+ + +S+GF + + T A+KA ++++
Sbjct: 201 VFVKNFGDDMDDEKLKEIFSGYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDK-------VFVKNLVETVDEEELKS 149
G I K + + + K + ++ E+ K+K +++KNL ET+D+E+LK
Sbjct: 261 GKSINGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETIDDEKLKE 320
Query: 150 HFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
F FG+I K++ E G+ KGFG + F S++ A KA+ EMNGR + V+L +
Sbjct: 321 EFSSFGSISRAKVMV-EVGQGKGFGVVCFSSFEEATKAVDEMNGRTVGSKPLHVTLGQ 377
>gi|281345691|gb|EFB21275.1| hypothetical protein PANDA_019324 [Ailuropoda melanoleuca]
Length = 381
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 87/282 (30%), Positives = 152/282 (53%), Gaps = 32/282 (11%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ +DN+AL F FG + +V + N S+G+A + F++ A A +A MN
Sbjct: 108 IFIKNLDKCIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMN 166
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G + ++ V + + P +R+ V ++ + VFVKN + +D+E+LK F +G
Sbjct: 167 GVRLNNRQVYVGRFKF-PEERAAEVRTRDRATFTN-VFVKNFGDDMDDEKLKEIFSGYGP 224
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF- 215
VK++RD +GKSKGFGF+++ +++AA+KA+++++G+ I +V A+ KK+
Sbjct: 225 TESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSINGKVLYVGRAQ----KKIER 280
Query: 216 --------------PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLV 261
K +PP + I++ NL I++ + +E F+ FG+I+ + ++
Sbjct: 281 LAELRRRFERLRLKEKSRPPGVP------IYIKNLDETIDDEKLKEEFSSFGSISRAKVM 334
Query: 262 SD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299
+ K G + F + AT AV MNG SKPL VTL
Sbjct: 335 VEVGQGKGFGVVCFSSFEEATKAVDEMNGRTVGSKPLHVTLG 376
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 78/267 (29%), Positives = 127/267 (47%), Gaps = 26/267 (9%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDES-RGFAIIVFNTPAEAKKARVEMNG 97
V +L+P V L +F+ G LR R+ R+ S G+ + F PA+A+ A MN
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 98 HLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNI 157
LI KP + + + R VG +F+KNL + +D L F FGNI
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVG---------NIFIKNLDKCIDNRALFYLFSAFGNI 132
Query: 158 IEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPK 217
+ K+V D+NG SKG+ ++ F S AA +AI MNG + + +V G+ FP+
Sbjct: 133 LSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYV-------GRFKFPE 184
Query: 218 VKPPLLQP---ARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFI 269
+ ++ A +FV N ++++ + +E+F+ +G S ++ D K GF+
Sbjct: 185 ERAAEVRTRDRATFTNVFVKNFGDDMDDEKLKEIFSGYGPTESVKVIRDASGKSKGFGFV 244
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKV 296
+ + A AV ++G K L V
Sbjct: 245 RYETHEAAQKAVLDLHGKSINGKVLYV 271
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 97/178 (54%), Gaps = 8/178 (4%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ V N +D++ L F +G V+V R+ + +S+GF + + T A+KA ++++
Sbjct: 201 VFVKNFGDDMDDEKLKEIFSGYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDK-------VFVKNLVETVDEEELKS 149
G I K + + + K + ++ E+ K+K +++KNL ET+D+E+LK
Sbjct: 261 GKSINGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETIDDEKLKE 320
Query: 150 HFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
F FG+I K++ E G+ KGFG + F S++ A KA+ EMNGR + V+L +
Sbjct: 321 EFSSFGSISRAKVMV-EVGQGKGFGVVCFSSFEEATKAVDEMNGRTVGSKPLHVTLGQ 377
>gi|356552218|ref|XP_003544466.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 652
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 90/308 (29%), Positives = 161/308 (52%), Gaps = 32/308 (10%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ ++D++AL + F FG + ++A + + S+G+ + F++ A+ A ++N
Sbjct: 123 IFIKNLDKAIDHKALHDTFSSFGLILSCKIATDASGLSKGYGFVQFDSEESAQNAIDKLN 182
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G LI K V + L+ R + + K + V+VKNL E+ +EEL F ++G
Sbjct: 183 GMLINDKQVYVGHF-LRKQDRENAL----SKTKFNNVYVKNLSESTTDEELMKFFGEYGT 237
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKK--V 214
I I+RD +GKS+ FGF+ F + A KA+ +NG+ + +V A+ ++ +
Sbjct: 238 ITSAVIMRDADGKSRCFGFVNFENPDDAAKAVEGLNGKKVDDKEWYVGKAQKKSEREQEL 297
Query: 215 FPKVKPPLLQPARKNK---IFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHI 266
+ + + + A K + +++ NL I++ + +E+FA +GTITS ++ D +
Sbjct: 298 KGRFEQSIKESADKYQGVNLYLKNLDDTISDEKLKEMFAEYGTITSCKVMRDPTGIGRGS 357
Query: 267 GFIEFIMPKHATHAVSTMNGHVFKSKPLKVTL---------------SGTKPGVSITNPT 311
GF+ F P+ A+ A+ MNG + KPL V L S +P V+IT P+
Sbjct: 358 GFVAFSTPEEASRALGEMNGKMIAGKPLYVALAQRKEDRRARLQAQFSQMRP-VAIT-PS 415
Query: 312 KAPKKPAY 319
AP+ P Y
Sbjct: 416 VAPRMPLY 423
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 77/270 (28%), Positives = 131/270 (48%), Gaps = 23/270 (8%)
Query: 24 SNKENN-KVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIV 81
+N NN + L+V +LE +V++ L + F + + VRV R+ S G+ +
Sbjct: 21 ANAPNNPNQFVTTSLYVGDLEQNVNDAQLYDLFNQVVQVVSVRVCRDLTTRRSLGYGYVN 80
Query: 82 FNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVET 141
F+ P +A +A +N + ++P+ I + P R +F+KNL +
Sbjct: 81 FSNPQDAARALDVLNFTPLNNRPIRIMYSHRDPSLRKSGTA---------NIFIKNLDKA 131
Query: 142 VDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNST 201
+D + L F FG I+ KI D +G SKG+GF+QF S ++A+ AI ++NG +I
Sbjct: 132 IDHKALHDTFSSFGLILSCKIATDASGLSKGYGFVQFDSEESAQNAIDKLNGMLINDKQV 191
Query: 202 FVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLV 261
+V G + + + L + N ++V NL + + E + F +GTITS+ ++
Sbjct: 192 YV-------GHFLRKQDRENALSKTKFNNVYVKNLSESTTDEELMKFFGEYGTITSAVIM 244
Query: 262 SD-----KHIGFIEFIMPKHATHAVSTMNG 286
D + GF+ F P A AV +NG
Sbjct: 245 RDADGKSRCFGFVNFENPDDAAKAVEGLNG 274
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 99/183 (54%), Gaps = 9/183 (4%)
Query: 33 KENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKAR 92
K N ++V NL S ++ L+ F ++GT+ + R+ + +SR F + F P +A KA
Sbjct: 210 KFNNVYVKNLSESTTDEELMKFFGEYGTITSAVIMRDADGKSRCFGFVNFENPDDAAKAV 269
Query: 93 VEMNGHLIGSKPVIITFV--------ELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDE 144
+NG + K + ELK G+ + + +Y+ +++KNL +T+ +
Sbjct: 270 EGLNGKKVDDKEWYVGKAQKKSEREQELK-GRFEQSIKESADKYQGVNLYLKNLDDTISD 328
Query: 145 EELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVS 204
E+LK F ++G I K++RD G +G GF+ F + + A +A+ EMNG+MI +V+
Sbjct: 329 EKLKEMFAEYGTITSCKVMRDPTGIGRGSGFVAFSTPEEASRALGEMNGKMIAGKPLYVA 388
Query: 205 LAE 207
LA+
Sbjct: 389 LAQ 391
>gi|68468953|ref|XP_721535.1| hypothetical protein CaO19.3037 [Candida albicans SC5314]
gi|68469502|ref|XP_721264.1| hypothetical protein CaO19.10555 [Candida albicans SC5314]
gi|74680286|sp|Q5AI15.1|PABP_CANAL RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|46443173|gb|EAL02457.1| hypothetical protein CaO19.10555 [Candida albicans SC5314]
gi|46443455|gb|EAL02737.1| hypothetical protein CaO19.3037 [Candida albicans SC5314]
gi|238879187|gb|EEQ42825.1| polyadenylate-binding protein [Candida albicans WO-1]
Length = 629
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 93/309 (30%), Positives = 155/309 (50%), Gaps = 23/309 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
+G+ W + D AR + + N + + NL P++DN+AL + F FG +
Sbjct: 119 EGRPCRIMWSQ---RDPSARRSGDGN-------IFIKNLHPAIDNKALHDTFSAFGKILS 168
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+VA ++ +S+ F + + T A+ A +NG L+ + V FV ++ +
Sbjct: 169 CKVATDEFGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREV---FVGKHISKKDRESKF 225
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
EE + ++VKN+ EE + F FG I + + +D++GKSKGFGF+ F +++
Sbjct: 226 EEMKANFTNIYVKNIDLNYSEESFEKLFSPFGKITSIYLEKDQDGKSKGFGFVNFEDHES 285
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A KA+ E+N + I +V A+ + KK + V+ L + +FV NL
Sbjct: 286 AVKAVEELNDKEINGQKIYVGRAQKKRERLEELKKQYEAVRLEKLAKYQGVNLFVKNLDD 345
Query: 239 NINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKP 293
I++ + EE F FGTITS+ ++ D K GF+ F P+ AT A++ MN + KP
Sbjct: 346 TIDSEKLEEEFKPFGTITSAKVMVDEAGKSKGFGFVCFTTPEEATKAITEMNTRMINGKP 405
Query: 294 LKVTLSGTK 302
L V L+ K
Sbjct: 406 LYVALAQRK 414
Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 84/276 (30%), Positives = 133/276 (48%), Gaps = 25/276 (9%)
Query: 19 DEGARSNKENNKVYKEN-ELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRG 76
D+ A E++ V + + L+V L PSV+ L F G + +RV R+ + +S G
Sbjct: 35 DQSAEEQGESSGVAENSASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLG 94
Query: 77 FAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVK 136
+A + ++ + +KA E+N + I +P I + + P R G +F+K
Sbjct: 95 YAYVNYHKYEDGEKAIEELNYNPIEGRPCRIMWSQRDPSARRSGDG---------NIFIK 145
Query: 137 NLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMI 196
NL +D + L F FG I+ K+ DE G+SK FGF+ + + +AAE AI +NG ++
Sbjct: 146 NLHPAIDNKALHDTFSAFGKILSCKVATDEFGQSKCFGFVHYETAEAAEAAIENVNGMLL 205
Query: 197 QHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKN--KIFVANLPSNINNSEFEELFARFGT 254
FV GK + K + + + N I+V N+ N + FE+LF+ FG
Sbjct: 206 NDREVFV-------GKHISKKDRESKFEEMKANFTNIYVKNIDLNYSEESFEKLFSPFGK 258
Query: 255 ITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMN 285
ITS L D K GF+ F + A AV +N
Sbjct: 259 ITSIYLEKDQDGKSKGFGFVNFEDHESAVKAVEELN 294
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 52/88 (59%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L V NL+ ++D++ L EFK FGT+ +V ++ +S+GF + F TP EA KA
Sbjct: 333 YQGVNLFVKNLDDTIDSEKLEEEFKPFGTITSAKVMVDEAGKSKGFGFVCFTTPEEATKA 392
Query: 92 RVEMNGHLIGSKPVIITFVELKPGQRSK 119
EMN +I KP+ + + K +RS+
Sbjct: 393 ITEMNTRMINGKPLYVALAQRKDVRRSQ 420
>gi|223590120|sp|A5DM21.2|PABP_PICGU RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|190347872|gb|EDK40224.2| hypothetical protein PGUG_04322 [Meyerozyma guilliermondii ATCC
6260]
Length = 631
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 93/308 (30%), Positives = 154/308 (50%), Gaps = 23/308 (7%)
Query: 5 GKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDV 64
G+ W + D R N + N + + NL P++DN+AL + F FG +
Sbjct: 126 GRPCRIMWSQ---RDPSLRRNGDGN-------IFIKNLHPAIDNKALHDTFSAFGRILSC 175
Query: 65 RVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPE 124
+VA ++ +S+ F + + T A+ A +NG L+ + V FV +R + E
Sbjct: 176 KVATDELGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREV---FVGKHVSKRDRESKFE 232
Query: 125 EKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAA 184
E + V+VKNL VD + + F FG + V + D+ GKS+GFGF+ F ++++A
Sbjct: 233 EMKANFTNVYVKNLAPEVDNAKFEEIFKPFGPVTSVHLETDQEGKSRGFGFVNFENHESA 292
Query: 185 EKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPSN 239
A+ EMN + I +V A+ + K+++ + L + +FV NL +
Sbjct: 293 LNAVKEMNDKEIDGQKLYVGRAQKKRERLDELKRLYESTRLEKLSKYQGVNLFVKNLDDS 352
Query: 240 INNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
I++ + EE F FGTITS+ ++ D K GF+ F P+ AT A++ MN + + KPL
Sbjct: 353 IDSEKLEEEFKPFGTITSARVMVDDAGKSKGFGFVCFSSPEEATKAITEMNQRMIQGKPL 412
Query: 295 KVTLSGTK 302
V L+ K
Sbjct: 413 YVALAQRK 420
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 88/298 (29%), Positives = 140/298 (46%), Gaps = 38/298 (12%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L PSV+ L F G + +RV R+ +S G+A + F+ A+ +A E+
Sbjct: 60 LYVGELNPSVNEALLFEIFSPIGQVSSIRVCRDAVTKKSLGYAYVNFHKHADGSRAIEEL 119
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N L+ +P I + + P R G +F+KNL +D + L F FG
Sbjct: 120 NYSLVDGRPCRIMWSQRDPSLRRNGDG---------NIFIKNLHPAIDNKALHDTFSAFG 170
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
I+ K+ DE G+SK FGF+ + + +AAE AI +NG ++ FV GK V
Sbjct: 171 RILSCKVATDELGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFV-------GKHVS 223
Query: 216 PKVKPPLLQPARKN--KIFVANLPSNINNSEFEELFARFGTITSSSLVSDKH-----IGF 268
+ + + + N ++V NL ++N++FEE+F FG +TS L +D+ GF
Sbjct: 224 KRDRESKFEEMKANFTNVYVKNLAPEVDNAKFEEIFKPFGPVTSVHLETDQEGKSRGFGF 283
Query: 269 IEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKPGVSITNPTKAPKKPAYIDEVKNV 326
+ F + A +AV MN + L V +A KK +DE+K +
Sbjct: 284 VNFENHESALNAVKEMNDKEIDGQKLYV--------------GRAQKKRERLDELKRL 327
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 52/88 (59%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L V NL+ S+D++ L EFK FGT+ RV + +S+GF + F++P EA KA
Sbjct: 339 YQGVNLFVKNLDDSIDSEKLEEEFKPFGTITSARVMVDDAGKSKGFGFVCFSSPEEATKA 398
Query: 92 RVEMNGHLIGSKPVIITFVELKPGQRSK 119
EMN +I KP+ + + K +RS+
Sbjct: 399 ITEMNQRMIQGKPLYVALAQRKDVRRSQ 426
>gi|74008013|ref|XP_549122.2| PREDICTED: polyadenylate-binding protein 5 [Canis lupus familiaris]
Length = 382
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 88/282 (31%), Positives = 152/282 (53%), Gaps = 32/282 (11%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S+DN+AL F FG + +V + N S+G+A + F++ A A +A MN
Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMN 166
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G + ++ V + + P +R+ V ++ + VFVKN +D+E+LK F +G
Sbjct: 167 GVRLNNRQVYVGRFKF-PEERAAEVRTRDRATFTN-VFVKNFGNDMDDEKLKEIFSGYGP 224
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF- 215
VK++RD +GKSKGFGF+++ +++AA+KA+++++G+ I +V A+ KK+
Sbjct: 225 TESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSINGKVLYVGRAQ----KKIER 280
Query: 216 --------------PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLV 261
K +PP + I++ NL I++ + +E F+ FG+I+ + ++
Sbjct: 281 LAELRRRFERLRLKEKSRPPGVP------IYIKNLDETIDDEKLKEEFSSFGSISRAKVM 334
Query: 262 SD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299
+ K G + F + AT AV MNG SKPL VTL
Sbjct: 335 VEVGQGKGFGVVCFSSFEDATKAVDEMNGRTVGSKPLHVTLG 376
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 78/267 (29%), Positives = 129/267 (48%), Gaps = 26/267 (9%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDES-RGFAIIVFNTPAEAKKARVEMNG 97
V +L+P V L +F+ G LR R+ R+ S G+ + F PA+A+ A MN
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 98 HLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNI 157
LI KP + + + R VG +F+KNL +++D L F FGNI
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVG---------NIFIKNLDKSIDNRALFYLFSAFGNI 132
Query: 158 IEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPK 217
+ K+V D+NG SKG+ ++ F S AA +AI MNG + + +V G+ FP+
Sbjct: 133 LSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYV-------GRFKFPE 184
Query: 218 VKPPLLQP---ARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFI 269
+ ++ A +FV N +++++ + +E+F+ +G S ++ D K GF+
Sbjct: 185 ERAAEVRTRDRATFTNVFVKNFGNDMDDEKLKEIFSGYGPTESVKVIRDASGKSKGFGFV 244
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKV 296
+ + A AV ++G K L V
Sbjct: 245 RYETHEAAQKAVLDLHGKSINGKVLYV 271
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 97/178 (54%), Gaps = 8/178 (4%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ V N +D++ L F +G V+V R+ + +S+GF + + T A+KA ++++
Sbjct: 201 VFVKNFGNDMDDEKLKEIFSGYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDK-------VFVKNLVETVDEEELKS 149
G I K + + + K + ++ E+ K+K +++KNL ET+D+E+LK
Sbjct: 261 GKSINGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETIDDEKLKE 320
Query: 150 HFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
F FG+I K++ E G+ KGFG + F S++ A KA+ EMNGR + V+L +
Sbjct: 321 EFSSFGSISRAKVMV-EVGQGKGFGVVCFSSFEDATKAVDEMNGRTVGSKPLHVTLGQ 377
>gi|212540254|ref|XP_002150282.1| polyadenylate-binding protein [Talaromyces marneffei ATCC 18224]
gi|210067581|gb|EEA21673.1| polyadenylate-binding protein [Talaromyces marneffei ATCC 18224]
Length = 748
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 80/268 (29%), Positives = 131/268 (48%), Gaps = 24/268 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+PSV L F G + +RV R+ S G+A + +N A+ ++A ++
Sbjct: 52 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 111
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI +P I + + P R G VF+KNL +D + L F FG
Sbjct: 112 NYTLIKGRPCRIMWSQRDPALRKTGQG---------NVFIKNLDTAIDNKALHDTFAAFG 162
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ +DE G SKG+GF+ + + +AA AI +NG ++ FV G +
Sbjct: 163 NILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFV-------GHHIS 215
Query: 216 PKVKPPLLQPARKN--KIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGF 268
K + + + N ++V N+ + + EF ELF +FG ITS+++ D + GF
Sbjct: 216 KKDRQSKFEEMKANFTNVYVKNIDPEVTDEEFRELFGKFGDITSATISRDDSGKSRGFGF 275
Query: 269 IEFIMPKHATHAVSTMNGHVFKSKPLKV 296
+ ++ ++A AV +N F + L V
Sbjct: 276 VNYVDHENAQTAVDDLNDKDFHGQKLYV 303
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 85/325 (26%), Positives = 150/325 (46%), Gaps = 59/325 (18%)
Query: 34 ENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARV 93
+ + + NL+ ++DN+AL + F FG + +VA+++ S+G+ + + T A A
Sbjct: 137 QGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIK 196
Query: 94 EMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIK 153
+NG L+ K V + K ++SK EE + V+VKN+ V +EE + F K
Sbjct: 197 HVNGMLLNDKKVFVGHHISKKDRQSKF---EEMKANFTNVYVKNIDPEVTDEEFRELFGK 253
Query: 154 FGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGK- 212
FG+I I RD++GKS+GFGF+ + ++ A+ A+ ++N + +V A+ +
Sbjct: 254 FGDITSATISRDDSGKSRGFGFVNYVDHENAQTAVDDLNDKDFHGQKLYVGRAQKKHERE 313
Query: 213 -KVFPKVKPPLLQPARKNK---IFVANLPSNINNSEFEELFARFGTITSSSLVSD----- 263
++ + + L+ A K + ++V NL ++++ + ELF+ FGTITS+ ++ D
Sbjct: 314 EELRRQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLRELFSAFGTITSAKVMRDTVGAG 373
Query: 264 ----------------------------------------------KHIGFIEFIMPKHA 277
K GF+ F P A
Sbjct: 374 SDSEKEETKESSEEVEEPKEEETNAKTEDEDKTDAKKSDKKVFGKSKGFGFVCFSSPDEA 433
Query: 278 THAVSTMNGHVFKSKPLKVTLSGTK 302
+ AV+ MN + KPL V L+ K
Sbjct: 434 SKAVTEMNQRMVNGKPLYVALAQRK 458
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 58/146 (39%), Gaps = 48/146 (32%)
Query: 20 EGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARN---------- 69
E AR K + Y+ L+V NL VD++ L F FGT+ +V R+
Sbjct: 321 EAARLEKASK--YQGVNLYVKNLTDDVDDEKLRELFSAFGTITSAKVMRDTVGAGSDSEK 378
Query: 70 -------------------------------KNDE-----SRGFAIIVFNTPAEAKKARV 93
K+D+ S+GF + F++P EA KA
Sbjct: 379 EETKESSEEVEEPKEEETNAKTEDEDKTDAKKSDKKVFGKSKGFGFVCFSSPDEASKAVT 438
Query: 94 EMNGHLIGSKPVIITFVELKPGQRSK 119
EMN ++ KP+ + + K ++S+
Sbjct: 439 EMNQRMVNGKPLYVALAQRKDVRKSQ 464
>gi|363753804|ref|XP_003647118.1| hypothetical protein Ecym_5562 [Eremothecium cymbalariae
DBVPG#7215]
gi|356890754|gb|AET40301.1| hypothetical protein Ecym_5562 [Eremothecium cymbalariae
DBVPG#7215]
Length = 580
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 82/276 (29%), Positives = 142/276 (51%), Gaps = 13/276 (4%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+++ NL P++DN++L F FG + +VA + N SRGF + F ++A+ A +N
Sbjct: 128 IYIKNLHPAIDNKSLHETFSTFGNILSCKVATDDNGVSRGFGFVHFENESDARDAIEAVN 187
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G L+ + V + + K ++SK EE + K ++VKN+ +EE + F K+G
Sbjct: 188 GMLMNDQEVYVAWHVSKKDRQSKL---EEVKAKFTNIYVKNIDLETSQEEFEQLFSKYGK 244
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPG 211
I + +D GK +GFGFI F + A +A+ E+N + + +V A+
Sbjct: 245 ITSAVLEKDSEGKLRGFGFINFEDHSTAARAVDELNESDFRGQTLYVGRAQKKHERQQEL 304
Query: 212 KKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHI 266
KK + + L + +F+ NL +I++ + ++ FA FGTITS ++ D +
Sbjct: 305 KKQYETARLEKLAKYQGVNLFIKNLDDSIDDEKLKDEFAPFGTITSVKVMKDEAGSSRGF 364
Query: 267 GFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ F P+ AT A++ N + KPL V ++ K
Sbjct: 365 GFVCFSTPEEATKAITEKNQQLVAGKPLYVAIAQRK 400
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 83/268 (30%), Positives = 130/268 (48%), Gaps = 24/268 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+PSV L + F G++ +RV R+ + S G+A + F+ +KA ++
Sbjct: 40 LYVGELDPSVSEALLYDIFSPIGSVSSIRVCRDAITNTSLGYAYVNFHDHEAGRKAIEQL 99
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI KP I + + P R K G +++KNL +D + L F FG
Sbjct: 100 NYTLIKGKPCRIMWSQRDPSLRKKGSG---------NIYIKNLHPAIDNKSLHETFSTFG 150
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ D+NG S+GFGF+ F + A AI +NG ++ +V+ V
Sbjct: 151 NILSCKVATDDNGVSRGFGFVHFENESDARDAIEAVNGMLMNDQEVYVAW-------HVS 203
Query: 216 PKVKPPLLQP--ARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGF 268
K + L+ A+ I+V N+ + EFE+LF+++G ITS+ L D + GF
Sbjct: 204 KKDRQSKLEEVKAKFTNIYVKNIDLETSQEEFEQLFSKYGKITSAVLEKDSEGKLRGFGF 263
Query: 269 IEFIMPKHATHAVSTMNGHVFKSKPLKV 296
I F A AV +N F+ + L V
Sbjct: 264 INFEDHSTAARAVDELNESDFRGQTLYV 291
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 53/88 (60%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L + NL+ S+D++ L +EF FGT+ V+V +++ SRGF + F+TP EA KA
Sbjct: 319 YQGVNLFIKNLDDSIDDEKLKDEFAPFGTITSVKVMKDEAGSSRGFGFVCFSTPEEATKA 378
Query: 92 RVEMNGHLIGSKPVIITFVELKPGQRSK 119
E N L+ KP+ + + K +R++
Sbjct: 379 ITEKNQQLVAGKPLYVAIAQRKEVRRNQ 406
>gi|255572313|ref|XP_002527095.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223533518|gb|EEF35258.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 657
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 83/275 (30%), Positives = 147/275 (53%), Gaps = 16/275 (5%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ ++DN+ L F FGT+ +VA + N +S+G+ + F A++A ++G
Sbjct: 137 IKNLDSTLDNKLLHETFAAFGTVLSCKVAVDSNGQSKGYGFVQFENEESAERAISFLDGM 196
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
+ K V + F ++ +R++ G K V+VKNL ET+ E+L+ F +G I
Sbjct: 197 CLNDKQVYVGFF-VRQQERTRTNGSP----KFTNVYVKNLSETITNEDLEKVFGVYGTIT 251
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHN-STFVSLAEIVPGKKVFPK 217
+++D+ GKS+GFGF+ F +A A+ ++NG + + +V A+ ++ K
Sbjct: 252 SALVMKDQTGKSRGFGFVNFQDPDSAAAAVEKLNGTTAHDDKAWYVGRAQRKSEREAELK 311
Query: 218 VKPPLLQPARKNKI-----FVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIG 267
K + +R ++ ++ NL NIN+ + +ELF+ FG+ITS ++ D K G
Sbjct: 312 AKFEQERNSRYERLKAANLYLKNLDDNINDVKLKELFSEFGSITSCKVMLDHQGVSKGSG 371
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F+ F P+ A+ A+ MNG + KPL V ++ K
Sbjct: 372 FVAFSTPEEASRALKEMNGKMIGRKPLYVAIAQRK 406
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 77/256 (30%), Positives = 126/256 (49%), Gaps = 22/256 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESR-GFAIIVFNTPAEAKKARVEM 95
L+V +LE +V+ + L + F + + VRV R++ S G+ + F+ P +A A +
Sbjct: 47 LYVGDLEQNVNEEQLYDLFSQIAQVVSVRVCRDQTKRSSLGYGYVNFSNPQDAANAMKAL 106
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N + KP+ I F P R G VF+KNL T+D + L F FG
Sbjct: 107 NFTPLNGKPIRIMFSHRDPSIRKSGYG---------NVFIKNLDSTLDNKLLHETFAAFG 157
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
++ K+ D NG+SKG+GF+QF + ++AE+AI ++G + +V G V
Sbjct: 158 TVLSCKVAVDSNGQSKGYGFVQFENEESAERAISFLDGMCLNDKQVYV-------GFFVR 210
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIE 270
+ + + ++V NL I N + E++F +GTITS+ ++ D + GF+
Sbjct: 211 QQERTRTNGSPKFTNVYVKNLSETITNEDLEKVFGVYGTITSALVMKDQTGKSRGFGFVN 270
Query: 271 FIMPKHATHAVSTMNG 286
F P A AV +NG
Sbjct: 271 FQDPDSAAAAVEKLNG 286
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 92/179 (51%), Gaps = 8/179 (4%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
++V NL ++ N+ L F +GT+ V +++ +SRGF + F P A A ++N
Sbjct: 226 VYVKNLSETITNEDLEKVFGVYGTITSALVMKDQTGKSRGFGFVNFQDPDSAAAAVEKLN 285
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDK--------VFVKNLVETVDEEELK 148
G + +R + + +Q + + +++KNL + +++ +LK
Sbjct: 286 GTTAHDDKAWYVGRAQRKSEREAELKAKFEQERNSRYERLKAANLYLKNLDDNINDVKLK 345
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
F +FG+I K++ D G SKG GF+ F + + A +A+ EMNG+MI +V++A+
Sbjct: 346 ELFSEFGSITSCKVMLDHQGVSKGSGFVAFSTPEEASRALKEMNGKMIGRKPLYVAIAQ 404
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 85/176 (48%), Gaps = 17/176 (9%)
Query: 127 QYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSK-GFGFIQFFSYKAAE 185
Q+ ++V +L + V+EE+L F + ++ V++ RD+ +S G+G++ F + + A
Sbjct: 41 QFANLSLYVGDLEQNVNEEQLYDLFSQIAQVVSVRVCRDQTKRSSLGYGYVNFSNPQDAA 100
Query: 186 KAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEF 245
A+ +N F L P + +F P + + N +F+ NL S ++N
Sbjct: 101 NAMKALN---------FTPL-NGKPIRIMFSHRDPSIRKSGYGN-VFIKNLDSTLDNKLL 149
Query: 246 EELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
E FA FGT+ S + D K GF++F + A A+S ++G K + V
Sbjct: 150 HETFAAFGTVLSCKVAVDSNGQSKGYGFVQFENEESAERAISFLDGMCLNDKQVYV 205
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 56/101 (55%), Gaps = 3/101 (2%)
Query: 22 ARSNKENNKVY---KENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFA 78
A+ +E N Y K L++ NL+ ++++ L F +FG++ +V + S+G
Sbjct: 312 AKFEQERNSRYERLKAANLYLKNLDDNINDVKLKELFSEFGSITSCKVMLDHQGVSKGSG 371
Query: 79 IIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSK 119
+ F+TP EA +A EMNG +IG KP+ + + K ++++
Sbjct: 372 FVAFSTPEEASRALKEMNGKMIGRKPLYVAIAQRKEERKAR 412
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSDKH------IGFIEFIMPKHATHAVSTM 284
++V +L N+N + +LF++ + S + D+ G++ F P+ A +A+ +
Sbjct: 47 LYVGDLEQNVNEEQLYDLFSQIAQVVSVRVCRDQTKRSSLGYGYVNFSNPQDAANAMKAL 106
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N KP+++ S P +
Sbjct: 107 NFTPLNGKPIRIMFSHRDPSI 127
>gi|326516828|dbj|BAJ96406.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 744
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 86/276 (31%), Positives = 140/276 (50%), Gaps = 15/276 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S+DN+AL + F FG + +VA + ES+G+ + + A A ++N
Sbjct: 215 IFIKNLDKSIDNKALHDTFCVFGNILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLN 274
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G L+ K V + K + + P K + V+VKNL ET E++LK F KFG
Sbjct: 275 GMLMNDKKVYVGPFVRKQERDNSP-----GSVKFNNVYVKNLAETTTEDDLKEIFGKFGT 329
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEI-----VPG 211
I V ++RD +G+SK FGF+ F S A A+ ++NG+ +V A+ +
Sbjct: 330 ITSVVVMRDGDGRSKCFGFVNFESPDEAALAVQDLNGKKFSDKEWYVGRAQKKSEREMEL 389
Query: 212 KKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHI 266
K+ F K + +++ NL +++ + ELFA FGTITS ++ D +
Sbjct: 390 KEKFEKNLQEAADKYQNTNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGS 449
Query: 267 GFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ F A+ A++ MN + +KPL V L+ K
Sbjct: 450 GFVAFKSADDASRALAEMNNKMVGNKPLYVALAQRK 485
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 82/273 (30%), Positives = 131/273 (47%), Gaps = 34/273 (12%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKK 90
+ L+V +L+ SV + L + F + G + VRV R+ + +S G+A + +NTPA+A +
Sbjct: 122 FPATSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAAR 181
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A +N I +P+ I + P R +F+KNL +++D + L
Sbjct: 182 ALEMLNFTPINGRPIRIMYSNRDPSLRKSGTA---------NIFIKNLDKSIDNKALHDT 232
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+ D G+SKG+GF+Q+ +AA AI ++NG ++ +V
Sbjct: 233 FCVFGNILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFVRKQ 292
Query: 206 -AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD- 263
+ PG F N ++V NL + +E+F +FGTITS ++ D
Sbjct: 293 ERDNSPGSVKF-------------NNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDG 339
Query: 264 ----KHIGFIEFIMPKHATHAVSTMNGHVFKSK 292
K GF+ F P A AV +NG F K
Sbjct: 340 DGRSKCFGFVNFESPDEAALAVQDLNGKKFSDK 372
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 96/182 (52%), Gaps = 7/182 (3%)
Query: 33 KENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKAR 92
K N ++V NL + L F KFGT+ V V R+ + S+ F + F +P EA A
Sbjct: 302 KFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFESPDEAALAV 361
Query: 93 VEMNGHLIGSKPVIITFVELKPGQR-------SKPVGPEEKQYKKDKVFVKNLVETVDEE 145
++NG K + + K + K + +Y+ +++KNL +TVD+E
Sbjct: 362 QDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDTVDDE 421
Query: 146 ELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL 205
+L+ F +FG I K++RD NG S+G GF+ F S A +A+ EMN +M+ + +V+L
Sbjct: 422 KLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAEMNNKMVGNKPLYVAL 481
Query: 206 AE 207
A+
Sbjct: 482 AQ 483
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 52/88 (59%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L++ NL+ +VD++ L F +FGT+ +V R+ N SRG + F + +A +A
Sbjct: 404 YQNTNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRA 463
Query: 92 RVEMNGHLIGSKPVIITFVELKPGQRSK 119
EMN ++G+KP+ + + K ++++
Sbjct: 464 LAEMNNKMVGNKPLYVALAQRKEDRKAR 491
>gi|313219101|emb|CBY43303.1| unnamed protein product [Oikopleura dioica]
Length = 512
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 100/340 (29%), Positives = 167/340 (49%), Gaps = 33/340 (9%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK + W + D R + + N + + NL+ S+DN+AL + F FG +
Sbjct: 69 KGKPIRIMWSQ---RDPSLRRSGQGN-------VFIKNLDRSIDNKALYDTFSSFGNILS 118
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V + N S+GF + + + A++A ++NG L+ K V + + + R + G
Sbjct: 119 CKVVCDING-SKGFGFVHYESDESAQRAIEKVNGMLMEDKKVFVARFKSR-NDRMREFGD 176
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDEN-GKSKGFGFIQFFSYK 182
K + +FVKNL ++ D + L +F +FG ++ K++ DE G SK GFI F +
Sbjct: 177 AAKHFTN--LFVKNLPDSWDTDALLENFEQFGEVVSHKVICDETTGLSKCHGFISFKEHD 234
Query: 183 AAEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLP 237
AE A+ M+ + I+ + A+ K + K+K +Q + ++V NL
Sbjct: 235 QAEAAVEIMHEKEIEGKKLYCGRAQKKAERSSELKAKYEKIKQERIQRYQGVNLYVKNLD 294
Query: 238 SNINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSK 292
+I++ E F +FG ITS+ +++D K GF+ F P+ AT AV+ MNG +F K
Sbjct: 295 DSIDDEGLREAFKQFGNITSAKVITDLNGRSKGFGFVCFSSPEEATKAVTEMNGRIFGGK 354
Query: 293 PLKVTLSGTKPGVSITNPTKAPKKPAYIDEVKNVIGIKVQ 332
PL V L+ K KA + Y+ V GI++Q
Sbjct: 355 PLYVGLAQRK------EDRKAHLQQQYMQRVST--GIRMQ 386
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 83/273 (30%), Positives = 129/273 (47%), Gaps = 38/273 (13%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L P + L ++F+ G + +RV R+ S G+A + F PA+A++A M
Sbjct: 4 LYVGDLHPDITEAMLYDKFQASGPVLSIRVCRDMVTRRSLGYAYVNFQQPADAERALDTM 63
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N +I KP+ I + + P R G VF+KNL ++D + L F FG
Sbjct: 64 NFDVIKGKPIRIMWSQRDPSLRRSGQG---------NVFIKNLDRSIDNKALYDTFSSFG 114
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVS--------LAE 207
NI+ K+V D NG SKGFGF+ + S ++A++AI ++NG +++ FV+ + E
Sbjct: 115 NILSCKVVCDING-SKGFGFVHYESDESAQRAIEKVNGMLMEDKKVFVARFKSRNDRMRE 173
Query: 208 IVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD---- 263
K F +FV NLP + + E F +FG + S ++ D
Sbjct: 174 FGDAAKHF-------------TNLFVKNLPDSWDTDALLENFEQFGEVVSHKVICDETTG 220
Query: 264 --KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
K GFI F A AV M+ + K L
Sbjct: 221 LSKCHGFISFKEHDQAEAAVEIMHEKEIEGKKL 253
>gi|255549774|ref|XP_002515938.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223544843|gb|EEF46358.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 608
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 87/310 (28%), Positives = 163/310 (52%), Gaps = 26/310 (8%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK++ W + AR + N L+V NL+ S+D+ L + F KFGT+
Sbjct: 86 KGKLMRIMW---CQRNPCARKSGIGN-------LYVKNLDASIDSAGLQSLFSKFGTILS 135
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIIT-FVELKPGQRSKPVG 122
+V ++ +S+G+ + F++ A AR ++ ++ K + ++ FV K +R+
Sbjct: 136 CKVVE-EHGKSKGYGFVQFDSEDSALAARTALHDTMLKEKKLYVSRFV--KKSERTTATS 192
Query: 123 PEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYK 182
+E ++ ++VKNL + + ++ + F FG II I++D NGKS+GFGF+ F S +
Sbjct: 193 YDELKFTN--LYVKNLSKDMTQDAFHNMFSAFGEIISAVIMQDHNGKSRGFGFVDFESPE 250
Query: 183 AAEKAIIEMNGRMIQHNSTFVSLAEIVPGKK-----VFPKVKPPLLQPARKNKIFVANLP 237
A+KA+ +NG ++ + FV A+ +K + + ++ + + ++V NL
Sbjct: 251 DAKKAVDALNGYQLESRTLFVGRAQAKAERKKILQHEYKDIFNTHMEKFKASNLYVKNLA 310
Query: 238 SNINNSEFEELFARFGTITSSSLV-----SDKHIGFIEFIMPKHATHAVSTMNGHVFKSK 292
I+N + +ELF+ G I S+ ++ + + GF+ F P+ A A++ +NG VF+ K
Sbjct: 311 LCIDNDKLQELFSCSGKIVSAKVMRYDNGASRGFGFVCFSSPEEAKKALNALNGAVFQGK 370
Query: 293 PLKVTLSGTK 302
L V ++ K
Sbjct: 371 SLYVAMAQCK 380
Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 109/202 (53%), Gaps = 16/202 (7%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L+V NL + A N F FG + + ++ N +SRGF + F +P +AKKA +N
Sbjct: 201 LYVKNLSKDMTQDAFHNMFSAFGEIISAVIMQDHNGKSRGFGFVDFESPEDAKKAVDALN 260
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEK--------QYKKDKVFVKNLVETVDEEELK 148
G+ + S+ + + + K +R K + E K ++K ++VKNL +D ++L+
Sbjct: 261 GYQLESRTLFVGRAQAK-AERKKILQHEYKDIFNTHMEKFKASNLYVKNLALCIDNDKLQ 319
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEI 208
F G I+ K++R +NG S+GFGF+ F S + A+KA+ +NG + Q S +V++A+
Sbjct: 320 ELFSCSGKIVSAKVMRYDNGASRGFGFVCFSSPEEAKKALNALNGAVFQGKSLYVAMAQC 379
Query: 209 VPGKKV-------FPKVKPPLL 223
+++ P+ +PP L
Sbjct: 380 KRDRQLALQTYFSVPQSQPPYL 401
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 82/172 (47%), Gaps = 20/172 (11%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEM 191
++V +L V E L++ F G I V + R G+S +G++ F+ A KA+ +
Sbjct: 21 LYVGDLDPEVTEMNLRTVFSSMGPIRNVHLCRCSLTGRSLCYGYVNFYRPYDAYKALSNL 80
Query: 192 NGRMIQHNSTFVSLAEIVPGK--KVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELF 249
N ++ GK ++ + P + + ++V NL ++I+++ + LF
Sbjct: 81 NHTYLK-------------GKLMRIMWCQRNPCARKSGIGNLYVKNLDASIDSAGLQSLF 127
Query: 250 ARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVT 297
++FGTI S +V + K GF++F A A + ++ + K K L V+
Sbjct: 128 SKFGTILSCKVVEEHGKSKGYGFVQFDSEDSALAARTALHDTMLKEKKLYVS 179
>gi|71993203|ref|NP_001021709.1| Protein PAB-1, isoform a [Caenorhabditis elegans]
gi|3880681|emb|CAA21572.1| Protein PAB-1, isoform a [Caenorhabditis elegans]
Length = 646
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 85/281 (30%), Positives = 134/281 (47%), Gaps = 35/281 (12%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVAR-NKNDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V+ L +F G + +RV R N S G+A + F PA+A++
Sbjct: 29 YTMASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAER 88
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN + KP+ I + + P R G +F+KNL + +D + +
Sbjct: 89 AMDTMNFEALHGKPMRIMWSQRDPAMRRSGAG---------NIFIKNLDKVIDNKSIYDT 139
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVP 210
F FGNI+ K+ DE+G SKG+GF+ F + +AA+ AI ++NG ++
Sbjct: 140 FSLFGNILSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQKVNGMLL-------------A 186
Query: 211 GKKVFPKVKPPLLQPARK--------NKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
GKKVF P Q R+ ++V N + N E+LFA+FG ITS +++
Sbjct: 187 GKKVFVGKFQPRAQRNRELGETAKQFTNVYVKNFGDHYNKETLEKLFAKFGNITSCEVMT 246
Query: 263 ----DKHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299
K GF+ F P+ A AV ++ + LK+ +
Sbjct: 247 VEGKSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHVC 287
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 94/347 (27%), Positives = 166/347 (47%), Gaps = 56/347 (16%)
Query: 5 GKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDV 64
GK + W + D R + N + + NL+ +DN+++ + F FG +
Sbjct: 100 GKPMRIMWSQ---RDPAMRRSGAGN-------IFIKNLDKVIDNKSIYDTFSLFGNILSC 149
Query: 65 RVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPE 124
+VA +++ S+G+ + F T A+ A ++NG L+ K V + + + QR++ +G
Sbjct: 150 KVAIDEDGFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPR-AQRNRELGET 208
Query: 125 EKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAA 184
KQ+ V+VKN + ++E L+ F KFGNI +++ E GKSKGFGF+ F + + A
Sbjct: 209 AKQFTN--VYVKNFGDHYNKETLEKLFAKFGNITSCEVMTVE-GKSKGFGFVAFANPEEA 265
Query: 185 EKAIIEMNGRMIQHNSTFVSL----------AEIVPGKKVFPKVKPPLLQPARKNKIFVA 234
E A+ ++ I+ + + AE+ KK + K +Q + ++V
Sbjct: 266 ETAVQALHDSTIEGTDLKLHVCRAQKKSERHAEL---KKKHEQHKAERMQKYQGVNLYVK 322
Query: 235 NLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVF 289
NL +++ ++ F +G ITS+ +++D K GF+ F P+ AT AV+ MN +
Sbjct: 323 NLDETVDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEATSAVTEMNSKMV 382
Query: 290 KSKPLKVTLS------------------------GTKPGVSITNPTK 312
SKPL V ++ G PG ++ NPT+
Sbjct: 383 CSKPLYVAIAQRKEDRRAQLASQYMQRLASMRMHGNVPGAAMYNPTQ 429
>gi|346323639|gb|EGX93237.1| polyadenylate-binding protein [Cordyceps militaris CM01]
Length = 736
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 83/297 (27%), Positives = 138/297 (46%), Gaps = 24/297 (8%)
Query: 8 LEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVA 67
++ S DD G N L+V L+PSV L F + G + +RV
Sbjct: 28 VDTSVSAATGDDAGPTPNSAAPHPQNSASLYVGELDPSVTEAMLFELFSQIGAVASIRVC 87
Query: 68 RNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEK 126
R+ S G+A + +N+ + +KA E+N LI +P I + + P R G
Sbjct: 88 RDAVTRRSLGYAYVNYNSTPDGEKALEELNYTLIKGRPCRIMWSQRDPALRKTGQG---- 143
Query: 127 QYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEK 186
VF+KNL +D + L F FGNI+ K+ +DE G SKG+GF+ + + +AA++
Sbjct: 144 -----NVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDETGSSKGYGFVHYETDEAAQQ 198
Query: 187 AIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKN--KIFVANLPSNINNSE 244
AI +NG ++ +V G + K + + + N +++ N+ ++ + +
Sbjct: 199 AIKHVNGMLLNEKKVYV-------GHHIPKKDRQSKFEEMKANFTNVYIKNIAPDVTDDQ 251
Query: 245 FEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
F LF G +TSSS+ D + GF+ F + A+ AV +N F + L V
Sbjct: 252 FRVLFEAHGDVTSSSIARDPDGKSRGFGFVNFTTHEAASAAVEELNNKDFHGQELYV 308
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 61/230 (26%), Positives = 123/230 (53%), Gaps = 8/230 (3%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ ++DN+AL + F FG + +VA+++ S+G+ + + T A++A +NG
Sbjct: 147 IKNLDVAIDNKALHDTFAAFGNILSCKVAQDETGSSKGYGFVHYETDEAAQQAIKHVNGM 206
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ K V + K ++SK EE + V++KN+ V +++ + F G++
Sbjct: 207 LLNEKKVYVGHHIPKKDRQSKF---EEMKANFTNVYIKNIAPDVTDDQFRVLFEAHGDVT 263
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGK--KVFP 216
I RD +GKS+GFGF+ F +++AA A+ E+N + +V A+ + ++
Sbjct: 264 SSSIARDPDGKSRGFGFVNFTTHEAASAAVEELNNKDFHGQELYVGRAQKKHEREEELRK 323
Query: 217 KVKPPLLQPARKNK---IFVANLPSNINNSEFEELFARFGTITSSSLVSD 263
+ ++ A K + +++ NL ++++ + +F FG ITS+ ++ D
Sbjct: 324 SYEAARIEKASKYQGVNLYIKNLDDDVDDEKLRTMFTEFGPITSAKVMRD 373
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 57/230 (24%), Positives = 94/230 (40%), Gaps = 60/230 (26%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+++ N+ P V + F+ G + +AR+ + +SRGF + F T A A E+N
Sbjct: 238 VYIKNIAPDVTDDQFRVLFEAHGDVTSSSIARDPDGKSRGFGFVNFTTHEAASAAVEELN 297
Query: 97 GHLIGSKPVIITFV--------ELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELK 148
+ + + EL+ + + K Y+ +++KNL + VD+E+L+
Sbjct: 298 NKDFHGQELYVGRAQKKHEREEELRKSYEAARIEKASK-YQGVNLYIKNLDDDVDDEKLR 356
Query: 149 SHFIKFGNIIEVKIVRD-------ENGK-------------------------------- 169
+ F +FG I K++RD E GK
Sbjct: 357 TMFTEFGPITSAKVMRDSPSDDEDEEGKEAEAEDKDKENKKADAEAEAAEAAEEENSDKE 416
Query: 170 ------------SKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
SKGFGF+ F + A KA+ EMN RMI +V+LA+
Sbjct: 417 KKERKGSKKLGKSKGFGFVCFSNPDDATKAVAEMNQRMINGKPLYVALAQ 466
>gi|189190886|ref|XP_001931782.1| polyadenylate-binding protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187973388|gb|EDU40887.1| polyadenylate-binding protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 704
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 82/266 (30%), Positives = 133/266 (50%), Gaps = 20/266 (7%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+PSV L F G + +RV R+ S G+A + +N+ + +KA E+
Sbjct: 50 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKALEEL 109
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N +I KP I + + P R G VF+KNL +D + L F FG
Sbjct: 110 NYTVIKGKPCRIMWSQRDPALRKTGQG---------NVFIKNLDHAIDNKALHDTFAAFG 160
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ +DE G SKG+GF+ + + +AA AI +NG ++ FV +P K+
Sbjct: 161 NILSCKVAQDELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFV--GHHIPKKERM 218
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIE 270
K + A I+V N+ ++++ +F +LF + G ITS+S+ D + GF+
Sbjct: 219 SKFEE---MKANFTNIYVKNIDLDVSDEDFRDLFEKHGDITSASIARDDQGKSRGFGFVN 275
Query: 271 FIMPKHATHAVSTMNGHVFKSKPLKV 296
+I + A+ AV +N F+ + L V
Sbjct: 276 YIKHEAASAAVDALNDTDFRGQKLYV 301
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/265 (26%), Positives = 131/265 (49%), Gaps = 18/265 (6%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK W + D R + N + + NL+ ++DN+AL + F FG +
Sbjct: 115 KGKPCRIMWSQ---RDPALRKTGQGN-------VFIKNLDHAIDNKALHDTFAAFGNILS 164
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+VA+++ S+G+ + + T A A +NG L+ K V + K + SK
Sbjct: 165 CKVAQDELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKERMSKF--- 221
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
EE + ++VKN+ V +E+ + F K G+I I RD+ GKS+GFGF+ + ++A
Sbjct: 222 EEMKANFTNIYVKNIDLDVSDEDFRDLFEKHGDITSASIARDDQGKSRGFGFVNYIKHEA 281
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAEIVPGK--KVFPKVKPPLLQPARKNK---IFVANLPS 238
A A+ +N + +V A+ + ++ + + L+ K + +++ NL
Sbjct: 282 ASAAVDALNDTDFRGQKLYVGRAQKKHEREEELRKQYEAARLEKQSKYQGVNLYIKNLND 341
Query: 239 NINNSEFEELFARFGTITSSSLVSD 263
++++ + ++F FGTITS+ ++ D
Sbjct: 342 DVDDEKLRDMFTPFGTITSAKVMRD 366
Score = 44.3 bits (103), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 29/40 (72%)
Query: 168 GKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
GKSKGFGF+ F + A KA+ EMN +MI++ +V+LA+
Sbjct: 420 GKSKGFGFVCFSNPDEATKAVTEMNQKMIENKPLYVALAQ 459
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 53/145 (36%), Gaps = 53/145 (36%)
Query: 20 EGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGT------LRDVRVARNKND- 72
E AR K++ Y+ L++ NL VD++ L + F FGT +RD A D
Sbjct: 319 EAARLEKQSK--YQGVNLYIKNLNDDVDDEKLRDMFTPFGTITSAKVMRDAMPAAGSEDA 376
Query: 73 --------------------------------------------ESRGFAIIVFNTPAEA 88
+S+GF + F+ P EA
Sbjct: 377 TDEKKDESKEESEEAKDESKEDSDDKKDEKADKVTIKGEKKILGKSKGFGFVCFSNPDEA 436
Query: 89 KKARVEMNGHLIGSKPVIITFVELK 113
KA EMN +I +KP+ + + K
Sbjct: 437 TKAVTEMNQKMIENKPLYVALAQRK 461
>gi|126137970|ref|XP_001385508.1| Polyadenylate-binding protein, cytoplasmic and nuclear
(Poly(A)-binding protein) (PABP) (ARS consensus binding
protein ACBP-67) (Polyadenylate tail-binding protein)
[Scheffersomyces stipitis CBS 6054]
gi|158513407|sp|A3LXL0.1|PABP_PICST RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|126092786|gb|ABN67479.1| Polyadenylate-binding protein, cytoplasmic and nuclear
(Poly(A)-binding protein) (PABP) (ARS consensus binding
protein ACBP-67) (Polyadenylate tail-binding protein)
[Scheffersomyces stipitis CBS 6054]
Length = 632
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 93/309 (30%), Positives = 154/309 (49%), Gaps = 23/309 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
+G+ W + D AR + + N + + NL P++DN+AL + F FG +
Sbjct: 119 EGRPCRIMWSQ---RDPSARRSGDGN-------IFIKNLHPAIDNKALHDTFSTFGKILS 168
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+VA + +S+ F + + T A+ A +NG L+ + V FV ++ +
Sbjct: 169 CKVATDDMGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREV---FVGKHISKKDRESKF 225
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
EE + ++VKN+ EE+LK F +G I + + +D GKSKGFGF+ + ++A
Sbjct: 226 EEIKANFTNIYVKNIDLEYSEEDLKKLFTPYGAITSIYLEKDAEGKSKGFGFVNYEGHEA 285
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A KA+ E+N + I +V A+ + KK + + L + +F+ NL
Sbjct: 286 AVKAVEELNDKEINGQKIYVGRAQKKRERMEELKKQYENTRLEKLSKYQGVNLFIKNLDD 345
Query: 239 NINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKP 293
I++ + EE F FGTITS+ ++ D K GF+ F P+ AT A++ MN +F KP
Sbjct: 346 TIDSEKLEEEFKPFGTITSARVMVDETGKSKGFGFVCFSSPEEATKAITEMNQRMFFGKP 405
Query: 294 LKVTLSGTK 302
L V L+ K
Sbjct: 406 LYVALAQRK 414
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 73/257 (28%), Positives = 120/257 (46%), Gaps = 24/257 (9%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L SV+ L F G + +RV R+ + +S G+A + ++ + +KA E+
Sbjct: 54 LYVGELNTSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKMEDGEKAIEEL 113
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N I +P I + + P R G +F+KNL +D + L F FG
Sbjct: 114 NYSPIEGRPCRIMWSQRDPSARRSGDG---------NIFIKNLHPAIDNKALHDTFSTFG 164
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
I+ K+ D+ G+SK FGF+ + + +AAE AI +NG ++ FV GK +
Sbjct: 165 KILSCKVATDDMGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFV-------GKHIS 217
Query: 216 PKVKPPLLQPARKN--KIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGF 268
K + + + N I+V N+ + + ++LF +G ITS L D K GF
Sbjct: 218 KKDRESKFEEIKANFTNIYVKNIDLEYSEEDLKKLFTPYGAITSIYLEKDAEGKSKGFGF 277
Query: 269 IEFIMPKHATHAVSTMN 285
+ + + A AV +N
Sbjct: 278 VNYEGHEAAVKAVEELN 294
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 52/88 (59%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L + NL+ ++D++ L EFK FGT+ RV ++ +S+GF + F++P EA KA
Sbjct: 333 YQGVNLFIKNLDDTIDSEKLEEEFKPFGTITSARVMVDETGKSKGFGFVCFSSPEEATKA 392
Query: 92 RVEMNGHLIGSKPVIITFVELKPGQRSK 119
EMN + KP+ + + K +RS+
Sbjct: 393 ITEMNQRMFFGKPLYVALAQRKDVRRSQ 420
>gi|302142286|emb|CBI19489.3| unnamed protein product [Vitis vinifera]
Length = 621
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 94/308 (30%), Positives = 161/308 (52%), Gaps = 32/308 (10%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S+DN+AL + F FG + ++A + + +S+G+ + F+ A+ A ++N
Sbjct: 108 IFIKNLDKSIDNKALHDTFSAFGNILSCKIATDPSGQSKGYGFVQFDNEESAQNAIDKLN 167
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G LI K V + L+ +R + + K + V+VKNL E+ EE+LK+ F +FG
Sbjct: 168 GMLINDKQVYVGQF-LRKQERETAL----NKTKFNNVYVKNLSESTTEEDLKNIFGEFGI 222
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEI-----VPG 211
I V ++RD +GKSK FGF+ F + A +A+ +NG+ +V A+ +
Sbjct: 223 ITSVVVMRDGDGKSKCFGFVNFENADDAAEAVEALNGKKFDEKEWYVGKAQKKYERELEL 282
Query: 212 KKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHI 266
K F + ++ + +++ NL +I + + +ELF+ FGTITS ++ D +
Sbjct: 283 KGRFEQSMKEVVDKFQGVNLYIKNLDDSIGDDKLKELFSEFGTITSCKVMRDPSGISRGS 342
Query: 267 GFIEFIMPKHATHAVSTMNGHVFKSKPLKVTL---------------SGTKPGVSITNPT 311
GF+ F + A+ A++ MNG + SKPL V L S +P VS+ P+
Sbjct: 343 GFVAFSTSEEASRALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRP-VSMA-PS 400
Query: 312 KAPKKPAY 319
AP+ P Y
Sbjct: 401 VAPRMPMY 408
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 76/270 (28%), Positives = 130/270 (48%), Gaps = 22/270 (8%)
Query: 29 NKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAE 87
N V L+V +L+ ++ + L + F + G + VRV R+ S G+ + ++ P +
Sbjct: 12 NGVANTASLYVGDLDVNITDSQLYDLFIQAGQVLSVRVCRDLSTRRSLGYGYVNYSNPQD 71
Query: 88 AKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEEL 147
A +A +N + KP+ I + P R +F+KNL +++D + L
Sbjct: 72 AARALDLLNFTPLNGKPIRIMYSHRDPSIRKSGTA---------NIFIKNLDKSIDNKAL 122
Query: 148 KSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
F FGNI+ KI D +G+SKG+GF+QF + ++A+ AI ++NG +I +V
Sbjct: 123 HDTFSAFGNILSCKIATDPSGQSKGYGFVQFDNEESAQNAIDKLNGMLINDKQVYV---- 178
Query: 208 IVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD---- 263
G+ + + + L + N ++V NL + + + +F FG ITS ++ D
Sbjct: 179 ---GQFLRKQERETALNKTKFNNVYVKNLSESTTEEDLKNIFGEFGIITSVVVMRDGDGK 235
Query: 264 -KHIGFIEFIMPKHATHAVSTMNGHVFKSK 292
K GF+ F A AV +NG F K
Sbjct: 236 SKCFGFVNFENADDAAEAVEALNGKKFDEK 265
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 99/182 (54%), Gaps = 7/182 (3%)
Query: 33 KENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKAR 92
K N ++V NL S + L N F +FG + V V R+ + +S+ F + F +A +A
Sbjct: 195 KFNNVYVKNLSESTTEEDLKNIFGEFGIITSVVVMRDGDGKSKCFGFVNFENADDAAEAV 254
Query: 93 VEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKK--DK-----VFVKNLVETVDEE 145
+NG K + + K + + G E+ K+ DK +++KNL +++ ++
Sbjct: 255 EALNGKKFDEKEWYVGKAQKKYERELELKGRFEQSMKEVVDKFQGVNLYIKNLDDSIGDD 314
Query: 146 ELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL 205
+LK F +FG I K++RD +G S+G GF+ F + + A +A+ EMNG+M+ +V+L
Sbjct: 315 KLKELFSEFGTITSCKVMRDPSGISRGSGFVAFSTSEEASRALTEMNGKMVVSKPLYVAL 374
Query: 206 AE 207
A+
Sbjct: 375 AQ 376
>gi|408395605|gb|EKJ74783.1| hypothetical protein FPSE_05031 [Fusarium pseudograminearum CS3096]
Length = 749
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 79/268 (29%), Positives = 131/268 (48%), Gaps = 24/268 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+PSV L F + G + +RV R+ S G+A + +N + +KA E+
Sbjct: 61 LYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNATPDGEKALEEL 120
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N +I +P I + + P R G VF+KNL +D + L F FG
Sbjct: 121 NYTIIKGRPCRIMWSQRDPALRKTGQG---------NVFIKNLDVAIDNKALHDTFAAFG 171
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ +DE G SKG+GF+ + + +AA +AI +NG ++ +V G +
Sbjct: 172 NILSCKVAQDETGASKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYV-------GHHIP 224
Query: 216 PKVKPPLLQPARKN--KIFVANLPSNINNSEFEELFARFGTITSSSLVSDKH-----IGF 268
K + + + N ++V N+ +++ +F +LF ++G +TSSSL D+ GF
Sbjct: 225 KKDRQSKFEEMKANFTNVYVKNIAADVTEDDFRQLFEKYGDVTSSSLARDQEGKSRGFGF 284
Query: 269 IEFIMPKHATHAVSTMNGHVFKSKPLKV 296
+ F + A AV +N F + L V
Sbjct: 285 VNFTTHESAFKAVDELNNKDFHGQDLYV 312
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/265 (26%), Positives = 137/265 (51%), Gaps = 18/265 (6%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KG+ W + D R + N + + NL+ ++DN+AL + F FG +
Sbjct: 126 KGRPCRIMWSQ---RDPALRKTGQGN-------VFIKNLDVAIDNKALHDTFAAFGNILS 175
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+VA+++ S+G+ + + T A +A +NG L+ K V + K ++SK
Sbjct: 176 CKVAQDETGASKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKF--- 232
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
EE + V+VKN+ V E++ + F K+G++ + RD+ GKS+GFGF+ F ++++
Sbjct: 233 EEMKANFTNVYVKNIAADVTEDDFRQLFEKYGDVTSSSLARDQEGKSRGFGFVNFTTHES 292
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAEIVPGK--KVFPKVKPPLLQPARKNK---IFVANLPS 238
A KA+ E+N + +V A+ + ++ + L+ A K + +++ NL
Sbjct: 293 AFKAVDELNNKDFHGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLDD 352
Query: 239 NINNSEFEELFARFGTITSSSLVSD 263
++++ + E+F FG+ITS+ ++ +
Sbjct: 353 DVDDDKLREMFKDFGSITSAKVMRE 377
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 58/232 (25%), Positives = 96/232 (41%), Gaps = 61/232 (26%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
++V N+ V F+K+G + +AR++ +SRGF + F T A KA E+N
Sbjct: 242 VYVKNIAADVTEDDFRQLFEKYGDVTSSSLARDQEGKSRGFGFVNFTTHESAFKAVDELN 301
Query: 97 GHLIGSKPVIITFVELKPGQ-----RSKPVGPEEK--QYKKDKVFVKNLVETVDEEELKS 149
+ + + + K + +S EK +Y+ +++KNL + VD+++L+
Sbjct: 302 NKDFHGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLDDDVDDDKLRE 361
Query: 150 HFIKFGNIIEVKIVR------DEN------------------------------------ 167
F FG+I K++R DE+
Sbjct: 362 MFKDFGSITSAKVMRETPTEGDEDKKEKDESDKENQEEVKEEVKEESKEESKDETKEGEE 421
Query: 168 ------------GKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
GKSKGFGF+ F + A KA+ EMN RM +V+LA+
Sbjct: 422 DKKAEKKSDKKLGKSKGFGFVCFSNPDDATKAVAEMNQRMFNGKPLYVALAQ 473
>gi|313229163|emb|CBY23748.1| unnamed protein product [Oikopleura dioica]
Length = 570
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 100/340 (29%), Positives = 167/340 (49%), Gaps = 33/340 (9%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK + W + D R + + N + + NL+ S+DN+AL + F FG +
Sbjct: 69 KGKPIRIMWSQ---RDPSLRRSGQGN-------VFIKNLDRSIDNKALYDTFSSFGNILS 118
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V + N S+GF + + + A++A ++NG L+ K V + + + R + G
Sbjct: 119 CKVVCDING-SKGFGFVHYESDESAQRAIEKVNGMLMEDKKVFVARFKSR-NDRMREFGD 176
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDEN-GKSKGFGFIQFFSYK 182
K + +FVKNL ++ D + L +F +FG ++ K++ DE G SK GFI F +
Sbjct: 177 AAKHFTN--LFVKNLPDSWDTDALLKNFEQFGEVVSHKVICDETTGLSKCHGFISFKEHD 234
Query: 183 AAEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLP 237
AE A+ M+ + I+ + A+ K + K+K +Q + ++V NL
Sbjct: 235 QAEAAVEIMHEKEIEGKKLYCGRAQKKAERSSELKAKYEKIKQERIQRYQGVNLYVKNLD 294
Query: 238 SNINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSK 292
+I++ E F +FG ITS+ +++D K GF+ F P+ AT AV+ MNG +F K
Sbjct: 295 DSIDDEGLREAFKQFGNITSAKVITDLNGRSKGFGFVCFSSPEEATKAVTEMNGRIFGGK 354
Query: 293 PLKVTLSGTKPGVSITNPTKAPKKPAYIDEVKNVIGIKVQ 332
PL V L+ K KA + Y+ V GI++Q
Sbjct: 355 PLYVGLAQRK------EDRKAHLQQQYMQRVST--GIRMQ 386
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 82/273 (30%), Positives = 129/273 (47%), Gaps = 38/273 (13%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L P + L ++F+ G + +RV R+ S G+A + F PA+A++A M
Sbjct: 4 LYVGDLHPDITEAMLYDKFQASGPVLSIRVCRDMVTRRSLGYAYVNFQQPADAERALDTM 63
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N +I KP+ I + + P R G VF+KNL ++D + L F FG
Sbjct: 64 NFDVIKGKPIRIMWSQRDPSLRRSGQG---------NVFIKNLDRSIDNKALYDTFSSFG 114
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVS--------LAE 207
NI+ K+V D NG SKGFGF+ + S ++A++AI ++NG +++ FV+ + E
Sbjct: 115 NILSCKVVCDING-SKGFGFVHYESDESAQRAIEKVNGMLMEDKKVFVARFKSRNDRMRE 173
Query: 208 IVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD---- 263
K F +FV NLP + + + F +FG + S ++ D
Sbjct: 174 FGDAAKHF-------------TNLFVKNLPDSWDTDALLKNFEQFGEVVSHKVICDETTG 220
Query: 264 --KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
K GFI F A AV M+ + K L
Sbjct: 221 LSKCHGFISFKEHDQAEAAVEIMHEKEIEGKKL 253
>gi|115475838|ref|NP_001061515.1| Os08g0314800 [Oryza sativa Japonica Group]
gi|35215045|dbj|BAC92404.1| putative polyadenylate-binding protein [Oryza sativa Japonica
Group]
gi|35215184|dbj|BAC92537.1| putative polyadenylate-binding protein [Oryza sativa Japonica
Group]
gi|113623484|dbj|BAF23429.1| Os08g0314800 [Oryza sativa Japonica Group]
gi|215694402|dbj|BAG89395.1| unnamed protein product [Oryza sativa Japonica Group]
gi|258644698|dbj|BAI39945.1| putative poly(A)-binding protein [Oryza sativa Indica Group]
Length = 660
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 100/317 (31%), Positives = 162/317 (51%), Gaps = 35/317 (11%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S+DN+AL + F FG + +VA + ES+G+ + F A+ A ++N
Sbjct: 129 IFIKNLDKSIDNKALYDTFSVFGNILSCKVATEMSGESKGYGFVQFELEEAAQNAISKLN 188
Query: 97 GHLIGSKPVII-TFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
G L+ K V + FV + +R G K + V+VKNL E+ E+ LK F KFG
Sbjct: 189 GMLLNDKKVYVGPFVRKQ--ERENVSG----NPKFNNVYVKNLSESTTEDNLKEIFGKFG 242
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
I V ++R+ +GKS+ FGF+ F + A +A+ ++NG+ +V A+ +++
Sbjct: 243 PITSVVVMREGDGKSRCFGFVNFENPDDAARAVEDLNGKKFDDKEWYVCRAQKKSEREME 302
Query: 216 PKVK--PPLLQPARKNK---IFVANLPSNINNSE-FEELFARFGTITSSSLVSD-----K 264
K K + + A KN+ +++ NL +I++ E +E+FA FGTITS ++ D K
Sbjct: 303 LKEKFEKNIKEAADKNQGTNLYLKNLDDSIDDDEKLKEIFADFGTITSCKVMRDLNGVSK 362
Query: 265 HIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTL---------------SGTKPGVSITN 309
GF+ F + A+ A+ MNG + SKPL V L S +P +
Sbjct: 363 GSGFVAFKSAEDASRALVAMNGKMIGSKPLYVALAQRKEERRARLQAQFSQMRP--MVMP 420
Query: 310 PTKAPKKPAYIDEVKNV 326
P+ AP+ P Y V V
Sbjct: 421 PSVAPRMPMYPPGVPGV 437
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 82/279 (29%), Positives = 134/279 (48%), Gaps = 34/279 (12%)
Query: 31 VYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDE-SRGFAIIVFNTPAEAK 89
++ L+V +L+ SV + L + F + G++ VRV R+ N S G+A + F++PA+A
Sbjct: 35 TFQATSLYVGDLDVSVQDAQLFDVFSQVGSVVSVRVCRDVNTRLSLGYAYVNFSSPADAA 94
Query: 90 KARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKS 149
+A +N I KP+ I + P R +F+KNL +++D + L
Sbjct: 95 RALEMLNFTPINGKPIRIMYSNRDPSSRKSGAA---------NIFIKNLDKSIDNKALYD 145
Query: 150 HFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL---- 205
F FGNI+ K+ + +G+SKG+GF+QF +AA+ AI ++NG ++ +V
Sbjct: 146 TFSVFGNILSCKVATEMSGESKGYGFVQFELEEAAQNAISKLNGMLLNDKKVYVGPFVRK 205
Query: 206 --AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD 263
E V G F N ++V NL + +E+F +FG ITS ++ +
Sbjct: 206 QERENVSGNPKF-------------NNVYVKNLSESTTEDNLKEIFGKFGPITSVVVMRE 252
Query: 264 -----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVT 297
+ GF+ F P A AV +NG F K V
Sbjct: 253 GDGKSRCFGFVNFENPDDAARAVEDLNGKKFDDKEWYVC 291
Score = 94.0 bits (232), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 63/183 (34%), Positives = 97/183 (53%), Gaps = 8/183 (4%)
Query: 33 KENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKAR 92
K N ++V NL S L F KFG + V V R + +SR F + F P +A +A
Sbjct: 216 KFNNVYVKNLSESTTEDNLKEIFGKFGPITSVVVMREGDGKSRCFGFVNFENPDDAARAV 275
Query: 93 VEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKK--DK-----VFVKNLVETVDEE 145
++NG K + + K + + EK K+ DK +++KNL +++D++
Sbjct: 276 EDLNGKKFDDKEWYVCRAQKKSEREMELKEKFEKNIKEAADKNQGTNLYLKNLDDSIDDD 335
Query: 146 E-LKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVS 204
E LK F FG I K++RD NG SKG GF+ F S + A +A++ MNG+MI +V+
Sbjct: 336 EKLKEIFADFGTITSCKVMRDLNGVSKGSGFVAFKSAEDASRALVAMNGKMIGSKPLYVA 395
Query: 205 LAE 207
LA+
Sbjct: 396 LAQ 398
>gi|38541222|gb|AAH62832.1| Pabpc1a protein, partial [Danio rerio]
Length = 327
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 86/279 (30%), Positives = 136/279 (48%), Gaps = 37/279 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I +PV I + + P R VG +F+KNL +++D + L
Sbjct: 68 ALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVG---------NIFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+GF+ F +++AAE+AI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F V ++ N ++++ + +E+F ++G S +++
Sbjct: 178 EREAEMGARAKEFTNV-------------YIKNFGEDMDDEKLKEIFCKYGPALSIRVMT 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
D K GF+ F + A AV MNG K + V
Sbjct: 225 DDSGKSKGFGFVSFERHEDAQRAVDEMNGKEMNGKQVYV 263
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 68/230 (29%), Positives = 131/230 (56%), Gaps = 9/230 (3%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S+DN+AL + F FG + +V ++N S+G+ + F T A++A +MN
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMN 159
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G L+ + V + + + +R +G K++ V++KN E +D+E+LK F K+G
Sbjct: 160 GMLLNDRKVFVGRFKSRK-EREAEMGARAKEFTN--VYIKNFGEDMDDEKLKEIFCKYGP 216
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPG 211
+ ++++ D++GKSKGFGF+ F ++ A++A+ EMNG+ + +V A+
Sbjct: 217 ALSIRVMTDDSGKSKGFGFVSFERHEDAQRAVDEMNGKEMNGKQVYVGRAQKKGERQTEL 276
Query: 212 KKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLV 261
K+ F ++K + + ++V NL +++ + F+ FGTITS+ ++
Sbjct: 277 KRKFEQMKQDRMTRYQGVNLYVKNLDDGLDDERLRKEFSPFGTITSAKVM 326
>gi|169771151|ref|XP_001820045.1| polyadenylate-binding protein, cytoplasmic and nuclear [Aspergillus
oryzae RIB40]
gi|317144326|ref|XP_003189588.1| polyadenylate-binding protein, cytoplasmic and nuclear [Aspergillus
oryzae RIB40]
gi|121923334|sp|Q2UK72.1|PABP_ASPOR RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|83767904|dbj|BAE58043.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391872693|gb|EIT81794.1| polyadenylate-binding protein [Aspergillus oryzae 3.042]
Length = 765
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 82/268 (30%), Positives = 130/268 (48%), Gaps = 24/268 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+PSV L F G + +RV R+ S G+A + +N A+ ++A ++
Sbjct: 51 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 110
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI KP I + + P R G VF+KNL +D + L F FG
Sbjct: 111 NYTLIKGKPCRIMWSQRDPALRKTGQG---------NVFIKNLDSAIDNKALHDTFAAFG 161
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ +DE G SKG+GF+ + + +AA AI +NG ++ FV G +
Sbjct: 162 NILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFV-------GHHIS 214
Query: 216 PKVKPPLLQPARKN--KIFVANLPSNINNSEFEELFARFGTITSSSLVSDKH-----IGF 268
K + + + N +++ N+ ++ EF ELF +FG ITS++L D+ GF
Sbjct: 215 KKDRQSKFEEMKANFTNVYIKNIDQDVTEEEFRELFEKFGEITSATLSRDQEGKSRGFGF 274
Query: 269 IEFIMPKHATHAVSTMNGHVFKSKPLKV 296
+ F + A AV MN +++ L V
Sbjct: 275 VNFSTHESAQAAVDEMNEKEIRTQKLYV 302
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 79/268 (29%), Positives = 141/268 (52%), Gaps = 18/268 (6%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK W + D R + N + + NL+ ++DN+AL + F FG +
Sbjct: 116 KGKPCRIMWSQ---RDPALRKTGQGN-------VFIKNLDSAIDNKALHDTFAAFGNILS 165
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+VA+++ S+G+ + + T A A +NG L+ K V + K ++SK
Sbjct: 166 CKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKF--- 222
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
EE + V++KN+ + V EEE + F KFG I + RD+ GKS+GFGF+ F ++++
Sbjct: 223 EEMKANFTNVYIKNIDQDVTEEEFRELFEKFGEITSATLSRDQEGKSRGFGFVNFSTHES 282
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAEIVPGK--KVFPKVKPPLLQPARKNK---IFVANLPS 238
A+ A+ EMN + I+ +V A+ + ++ + + L+ A K + ++V NL
Sbjct: 283 AQAAVDEMNEKEIRTQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTD 342
Query: 239 NINNSEFEELFARFGTITSSSLVSDKHI 266
++++ + ELF +GTITS+ ++ D +I
Sbjct: 343 DVDDEKLRELFGPYGTITSAKVMRDTNI 370
Score = 45.8 bits (107), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 27/40 (67%)
Query: 168 GKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
GKSKGFGF+ F S A KA+ EMN RM+ +V+LA+
Sbjct: 430 GKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQ 469
Score = 41.6 bits (96), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 28/46 (60%)
Query: 74 SRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSK 119
S+GF + F++P EA KA EMN ++ KP+ + + K +RS+
Sbjct: 432 SKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQ 477
>gi|308486599|ref|XP_003105496.1| CRE-PAB-2 protein [Caenorhabditis remanei]
gi|308255462|gb|EFO99414.1| CRE-PAB-2 protein [Caenorhabditis remanei]
Length = 730
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 79/277 (28%), Positives = 137/277 (49%), Gaps = 20/277 (7%)
Query: 29 NKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVAR-NKNDESRGFAIIVFNTPAE 87
N Y L++ +L P V L +F G + +RV R N + S G+A + F PA+
Sbjct: 49 NATYSMASLYIGDLHPDVTESMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPAD 108
Query: 88 AKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEEL 147
A++A MN +I +P+ I + + P R G +F+KNL +D + +
Sbjct: 109 AERALDTMNFEVIHGRPMRIMWSQRDPAARRAGNG---------NIFIKNLDRVIDNKSI 159
Query: 148 KSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
F FGNI+ K+ DE G SKG+GF+ F + +A AI ++NG ++ FV +
Sbjct: 160 YDTFSLFGNILSCKVATDEEGNSKGYGFVHFETEASALTAIEKVNGMLLSDKKVFV--GK 217
Query: 208 IVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD---- 263
P + ++ L + +F+ N +++ + E+F+++G ITS+ +++D
Sbjct: 218 FQPRAQRMKELGESGL---KYTNVFIKNFGDHLDEKKLTEMFSKYGEITSAVVMTDNSGK 274
Query: 264 -KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299
K GF+ F+ P A AV T+N + LK+++
Sbjct: 275 PKGFGFVAFVDPDAAIKAVDTLNESTLEGTDLKLSVC 311
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 92/313 (29%), Positives = 154/313 (49%), Gaps = 31/313 (9%)
Query: 5 GKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDV 64
G+ + W + D AR N + + NL+ +DN+++ + F FG +
Sbjct: 123 GRPMRIMWSQ---RDPAARRAGNGN-------IFIKNLDRVIDNKSIYDTFSLFGNILSC 172
Query: 65 RVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPE 124
+VA ++ S+G+ + F T A A A ++NG L+ K V + + + QR K +G
Sbjct: 173 KVATDEEGNSKGYGFVHFETEASALTAIEKVNGMLLSDKKVFVGKFQPR-AQRMKELG-- 229
Query: 125 EKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAA 184
E K VF+KN + +DE++L F K+G I ++ D +GK KGFGF+ F AA
Sbjct: 230 ESGLKYTNVFIKNFGDHLDEKKLTEMFSKYGEITSAVVMTDNSGKPKGFGFVAFVDPDAA 289
Query: 185 EKAIIEMNGRMIQHNSTFVSL----------AEIVPGKKVFPKVKPPLLQPARKNKIFVA 234
KA+ +N ++ +S+ AE+ K+ + +K +Q + ++V
Sbjct: 290 IKAVDTLNESTLEGTDLKLSVCRAQKKSERTAEL---KRKYEALKQERVQRYQGVNLYVK 346
Query: 235 NLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVF 289
N+ + + E FA FG+ITS+ ++ D K GF+ F P+ AT AV+ MN +
Sbjct: 347 NIEEEMTDDGLREHFANFGSITSAKVMVDENGRSKGFGFVCFEKPEEATAAVTEMNSKMI 406
Query: 290 KSKPLKVTLSGTK 302
+KPL V L+ K
Sbjct: 407 GAKPLYVALAQRK 419
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 51/94 (54%)
Query: 26 KENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTP 85
+E + Y+ L+V N+E + + L F FG++ +V ++N S+GF + F P
Sbjct: 332 QERVQRYQGVNLYVKNIEEEMTDDGLREHFANFGSITSAKVMVDENGRSKGFGFVCFEKP 391
Query: 86 AEAKKARVEMNGHLIGSKPVIITFVELKPGQRSK 119
EA A EMN +IG+KP+ + + K +R++
Sbjct: 392 EEATAAVTEMNSKMIGAKPLYVALAQRKEDRRAQ 425
>gi|332858528|ref|XP_003317002.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like isoform 1
[Pan troglodytes]
Length = 330
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 133/256 (51%), Gaps = 21/256 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L P V L +F G + +RV R+ S G+A I F PA+A++A M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N ++ +P+ I + + PG R VG +F+KNL +++D + L F FG
Sbjct: 73 NFEMLKGQPIRIMWSQRDPGLRKSGVG---------NIFIKNLEDSIDNKALYDTFSTFG 123
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ DE+G S+GFGF+ F +++AA++AI MNG ++ FV ++
Sbjct: 124 NILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFV--GHFKSRRERE 180
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIE 270
++ L+ I+V NLP +++ +ELF++FG + S ++ D + GF+
Sbjct: 181 AELGARALEFT---NIYVKNLPVDVDEQGLQELFSQFGKMLSVKVMRDNSGHSRCFGFVN 237
Query: 271 FIMPKHATHAVSTMNG 286
F + A AV MNG
Sbjct: 238 FEKHEEAQKAVVHMNG 253
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 76/260 (29%), Positives = 138/260 (53%), Gaps = 19/260 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KG+ + W + D G R + N + + NLE S+DN+AL + F FG +
Sbjct: 78 KGQPIRIMWSQ---RDPGLRKSGVGN-------IFIKNLEDSIDNKALYDTFSTFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+VA +++ SRGF + F T A++A MNG L+ + V + + + +R +G
Sbjct: 128 CKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRR-EREAELGA 185
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
++ ++VKNL VDE+ L+ F +FG ++ VK++RD +G S+ FGF+ F ++
Sbjct: 186 RALEFTN--IYVKNLPVDVDEQGLQELFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEE 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAEIV-----PGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A+KA++ MNG+ + + A+ K+ F ++K L+ + ++V NL
Sbjct: 244 AQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDD 303
Query: 239 NINNSEFEELFARFGTITSS 258
+I++ + + F+ +G ITS+
Sbjct: 304 SIDDDKLRKEFSPYGVITSA 323
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 79/169 (46%), Gaps = 16/169 (9%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRD-ENGKSKGFGFIQFFSYKAAEKAIIEM 191
++V +L V E L F G I+ +++ RD +S G+ +I F AE+A+ M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 192 NGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFAR 251
N M++ + ++ PG L+ + IF+ NL +I+N + F+
Sbjct: 73 NFEMLKGQPIRIMWSQRDPG-----------LRKSGVGNIFIKNLEDSIDNKALYDTFST 121
Query: 252 FGTITSSSLVSDKH----IGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
FG I S + D+H GF+ F + A A++TMNG + + + V
Sbjct: 122 FGNILSCKVACDEHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFV 170
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 69/136 (50%), Gaps = 9/136 (6%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
++V NL VD Q L F +FG + V+V R+ + SR F + F EA+KA V MN
Sbjct: 193 IYVKNLPVDVDEQGLQELFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMN 252
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKV--------FVKNLVETVDEEELK 148
G + + + + K +R + +Q K+D++ +VKNL +++D+++L+
Sbjct: 253 GKEVSGRLLYAGRAQ-KRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLR 311
Query: 149 SHFIKFGNIIEVKIVR 164
F +G I K R
Sbjct: 312 KEFSPYGVITSAKKRR 327
>gi|225458678|ref|XP_002284923.1| PREDICTED: polyadenylate-binding protein 2 [Vitis vinifera]
gi|147773643|emb|CAN76464.1| hypothetical protein VITISV_017035 [Vitis vinifera]
Length = 640
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 94/308 (30%), Positives = 161/308 (52%), Gaps = 32/308 (10%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S+DN+AL + F FG + ++A + + +S+G+ + F+ A+ A ++N
Sbjct: 108 IFIKNLDKSIDNKALHDTFSAFGNILSCKIATDPSGQSKGYGFVQFDNEESAQNAIDKLN 167
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G LI K V + L+ +R + + K + V+VKNL E+ EE+LK+ F +FG
Sbjct: 168 GMLINDKQVYVGQF-LRKQERETAL----NKTKFNNVYVKNLSESTTEEDLKNIFGEFGI 222
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEI-----VPG 211
I V ++RD +GKSK FGF+ F + A +A+ +NG+ +V A+ +
Sbjct: 223 ITSVVVMRDGDGKSKCFGFVNFENADDAAEAVEALNGKKFDEKEWYVGKAQKKYERELEL 282
Query: 212 KKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHI 266
K F + ++ + +++ NL +I + + +ELF+ FGTITS ++ D +
Sbjct: 283 KGRFEQSMKEVVDKFQGVNLYIKNLDDSIGDDKLKELFSEFGTITSCKVMRDPSGISRGS 342
Query: 267 GFIEFIMPKHATHAVSTMNGHVFKSKPLKVTL---------------SGTKPGVSITNPT 311
GF+ F + A+ A++ MNG + SKPL V L S +P VS+ P+
Sbjct: 343 GFVAFSTSEEASRALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRP-VSMA-PS 400
Query: 312 KAPKKPAY 319
AP+ P Y
Sbjct: 401 VAPRMPMY 408
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 76/270 (28%), Positives = 130/270 (48%), Gaps = 22/270 (8%)
Query: 29 NKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAE 87
N V L+V +L+ ++ + L + F + G + VRV R+ S G+ + ++ P +
Sbjct: 12 NGVANTASLYVGDLDVNITDSQLYDLFIQAGQVLSVRVCRDLSTRRSLGYGYVNYSNPQD 71
Query: 88 AKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEEL 147
A +A +N + KP+ I + P R +F+KNL +++D + L
Sbjct: 72 AARALDLLNFTPLNGKPIRIMYSHRDPSIRKSGTA---------NIFIKNLDKSIDNKAL 122
Query: 148 KSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
F FGNI+ KI D +G+SKG+GF+QF + ++A+ AI ++NG +I +V
Sbjct: 123 HDTFSAFGNILSCKIATDPSGQSKGYGFVQFDNEESAQNAIDKLNGMLINDKQVYV---- 178
Query: 208 IVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD---- 263
G+ + + + L + N ++V NL + + + +F FG ITS ++ D
Sbjct: 179 ---GQFLRKQERETALNKTKFNNVYVKNLSESTTEEDLKNIFGEFGIITSVVVMRDGDGK 235
Query: 264 -KHIGFIEFIMPKHATHAVSTMNGHVFKSK 292
K GF+ F A AV +NG F K
Sbjct: 236 SKCFGFVNFENADDAAEAVEALNGKKFDEK 265
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 99/182 (54%), Gaps = 7/182 (3%)
Query: 33 KENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKAR 92
K N ++V NL S + L N F +FG + V V R+ + +S+ F + F +A +A
Sbjct: 195 KFNNVYVKNLSESTTEEDLKNIFGEFGIITSVVVMRDGDGKSKCFGFVNFENADDAAEAV 254
Query: 93 VEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKK--DK-----VFVKNLVETVDEE 145
+NG K + + K + + G E+ K+ DK +++KNL +++ ++
Sbjct: 255 EALNGKKFDEKEWYVGKAQKKYERELELKGRFEQSMKEVVDKFQGVNLYIKNLDDSIGDD 314
Query: 146 ELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL 205
+LK F +FG I K++RD +G S+G GF+ F + + A +A+ EMNG+M+ +V+L
Sbjct: 315 KLKELFSEFGTITSCKVMRDPSGISRGSGFVAFSTSEEASRALTEMNGKMVVSKPLYVAL 374
Query: 206 AE 207
A+
Sbjct: 375 AQ 376
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 55/97 (56%)
Query: 23 RSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVF 82
+S KE ++ L++ NL+ S+ + L F +FGT+ +V R+ + SRG + F
Sbjct: 288 QSMKEVVDKFQGVNLYIKNLDDSIGDDKLKELFSEFGTITSCKVMRDPSGISRGSGFVAF 347
Query: 83 NTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSK 119
+T EA +A EMNG ++ SKP+ + + K +R++
Sbjct: 348 STSEEASRALTEMNGKMVVSKPLYVALAQRKEERRAR 384
>gi|224063493|ref|XP_002301171.1| predicted protein [Populus trichocarpa]
gi|222842897|gb|EEE80444.1| predicted protein [Populus trichocarpa]
Length = 657
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 82/270 (30%), Positives = 149/270 (55%), Gaps = 14/270 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ ++D++AL + F FG + +VA + + +S+G+ + F++ A+ A ++N
Sbjct: 121 IFIKNLDKTIDHKALHDTFSSFGNILSCKVATDASGQSKGYGFVQFDSEEAAQNAIDKLN 180
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G LI K V + L+ +R + K + ++VKNL E+ +E+LKS F + G
Sbjct: 181 GMLINDKQVYVGNF-LRKQERDSAL----SNIKFNNIYVKNLAESTTDEDLKSIFEEHGA 235
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFP 216
I ++RD +GKSK FGF+ F + A KA+ +NG+ +V A+ +++
Sbjct: 236 ITSAVVMRDADGKSKCFGFVNFENVDDAAKAVEALNGKKFDDKEWYVGKAQKKSERELEL 295
Query: 217 KVK-PPLLQPARKNK---IFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIG 267
K + L+ K + +++ NL ++N+ + +ELF+ FGTITS ++ D + G
Sbjct: 296 KGRFEQSLESVEKYQAVNLYIKNLDDSVNDEKLKELFSDFGTITSCKVMHDPSGISRGSG 355
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKVT 297
F+ F P+ A+ A++ +NG + SKPL V
Sbjct: 356 FVAFSTPEEASRALAELNGKMVVSKPLYVA 385
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 77/262 (29%), Positives = 130/262 (49%), Gaps = 22/262 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L+ +V + L + F + G + VRV R+ S G+ + ++ P +A +A +
Sbjct: 33 LYVGDLDFNVTDSQLYDLFNQVGQVVSVRVCRDLSTRRSLGYGYVNYSNPQDAARALDVL 92
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N + +KP+ I + P R + +F+KNL +T+D + L F FG
Sbjct: 93 NFTPLNNKPLRIMYSHRDPSIRKSGMA---------NIFIKNLDKTIDHKALHDTFSSFG 143
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ D +G+SKG+GF+QF S +AA+ AI ++NG +I +V G +
Sbjct: 144 NILSCKVATDASGQSKGYGFVQFDSEEAAQNAIDKLNGMLINDKQVYV-------GNFLR 196
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIE 270
+ + L + N I+V NL + + + + +F G ITS+ ++ D K GF+
Sbjct: 197 KQERDSALSNIKFNNIYVKNLAESTTDEDLKSIFEEHGAITSAVVMRDADGKSKCFGFVN 256
Query: 271 FIMPKHATHAVSTMNGHVFKSK 292
F A AV +NG F K
Sbjct: 257 FENVDDAAKAVEALNGKKFDDK 278
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 96/181 (53%), Gaps = 6/181 (3%)
Query: 33 KENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKAR 92
K N ++V NL S ++ L + F++ G + V R+ + +S+ F + F +A KA
Sbjct: 208 KFNNIYVKNLAESTTDEDLKSIFEEHGAITSAVVMRDADGKSKCFGFVNFENVDDAAKAV 267
Query: 93 VEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEK------QYKKDKVFVKNLVETVDEEE 146
+NG K + + K + + G E+ +Y+ +++KNL ++V++E+
Sbjct: 268 EALNGKKFDDKEWYVGKAQKKSERELELKGRFEQSLESVEKYQAVNLYIKNLDDSVNDEK 327
Query: 147 LKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLA 206
LK F FG I K++ D +G S+G GF+ F + + A +A+ E+NG+M+ +V+ A
Sbjct: 328 LKELFSDFGTITSCKVMHDPSGISRGSGFVAFSTPEEASRALAELNGKMVVSKPLYVAPA 387
Query: 207 E 207
+
Sbjct: 388 Q 388
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 87/189 (46%), Gaps = 17/189 (8%)
Query: 114 PGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRD-ENGKSKG 172
PG GP Q+ ++V +L V + +L F + G ++ V++ RD +S G
Sbjct: 14 PGPNGVAAGPGAIQFVPTSLYVGDLDFNVTDSQLYDLFNQVGQVVSVRVCRDLSTRRSLG 73
Query: 173 FGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIF 232
+G++ + + + A +A+ +N F L P + ++ P + + N IF
Sbjct: 74 YGYVNYSNPQDAARALDVLN---------FTPLNN-KPLRIMYSHRDPSIRKSGMAN-IF 122
Query: 233 VANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGH 287
+ NL I++ + F+ FG I S + +D K GF++F + A +A+ +NG
Sbjct: 123 IKNLDKTIDHKALHDTFSSFGNILSCKVATDASGQSKGYGFVQFDSEEAAQNAIDKLNGM 182
Query: 288 VFKSKPLKV 296
+ K + V
Sbjct: 183 LINDKQVYV 191
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 52/88 (59%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L++ NL+ SV+++ L F FGT+ +V + + SRG + F+TP EA +A
Sbjct: 309 YQAVNLYIKNLDDSVNDEKLKELFSDFGTITSCKVMHDPSGISRGSGFVAFSTPEEASRA 368
Query: 92 RVEMNGHLIGSKPVIITFVELKPGQRSK 119
E+NG ++ SKP+ + + K +R++
Sbjct: 369 LAELNGKMVVSKPLYVAPAQRKEERRAR 396
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSDKHI------GFIEFIMPKHATHAVSTM 284
++V +L N+ +S+ +LF + G + S + D G++ + P+ A A+ +
Sbjct: 33 LYVGDLDFNVTDSQLYDLFNQVGQVVSVRVCRDLSTRRSLGYGYVNYSNPQDAARALDVL 92
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N +KPL++ S P +
Sbjct: 93 NFTPLNNKPLRIMYSHRDPSI 113
>gi|173421|gb|AAA35320.1| poly(A)-binding protein, partial [Schizosaccharomyces pombe]
Length = 628
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 78/277 (28%), Positives = 145/277 (52%), Gaps = 19/277 (6%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+P++DN+AL + F FG + +VA ++ ++G+ + F++ A A +NG
Sbjct: 158 IKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVNGM 217
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ K V +V +R + E + V++KNL + E+E F +FG I
Sbjct: 218 LLNDKKV---YVGHHVSRRERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEIT 274
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLA--------EIVP 210
+ +V+D+N K +GFGF+ + +++ A+KA+ E+N + + +V A E+
Sbjct: 275 SLSLVKDQNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHEREEEL-- 332
Query: 211 GKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KH 265
+K + ++K + + +F+ NL +++ + F+ FGTITS+ +++D K
Sbjct: 333 -RKAYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGKSKG 391
Query: 266 IGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ + P+ A AV+ MN + KPL V L+ K
Sbjct: 392 FGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQRK 428
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 83/268 (30%), Positives = 129/268 (48%), Gaps = 24/268 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+PSV L F G + +RV R+ S G+A + F+ + +KA E+
Sbjct: 68 LYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDEL 127
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI +P I + + P R G VF+KNL +D + L F FG
Sbjct: 128 NYTLIKGRPCRIMWSQRDPSLRKMGTG---------NVFIKNLDPAIDNKALHDTFSAFG 178
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
I+ K+ DE G +KG+GF+ F S ++A AI +NG ++ +V G V
Sbjct: 179 KILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYV-------GHHVS 231
Query: 216 PKVKPPLLQPARKN--KIFVANLPSNINNSEFEELFARFGTITSSSLVSDKH-----IGF 268
+ + ++ + N +++ NL + I EF +LF +FG ITS SLV D++ GF
Sbjct: 232 RRERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGF 291
Query: 269 IEFIMPKHATHAVSTMNGHVFKSKPLKV 296
+ + + A AV +N +K K L V
Sbjct: 292 VNYANHECAQKAVDELNDKEYKGKKLYV 319
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 99/179 (55%), Gaps = 9/179 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+++ NL+ + Q + F +FG + + + +++ND+ RGF + + A+KA E+N
Sbjct: 249 VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELN 308
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDK--------VFVKNLVETVDEEELK 148
K + + + K +R + + +Q K +K +F+KNL + VD+E LK
Sbjct: 309 DKEYKGKKLYVGRAQ-KKHEREEELRKAYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLK 367
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
+ F FG I KI+ DE GKSKGFGF+ + + + A KA+ EMN RM+ +V+LA+
Sbjct: 368 AEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQ 426
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 50/88 (56%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L + NL+ VD++ L EF FGT+ ++ ++ +S+GF + + TP EA KA
Sbjct: 347 YQGVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKA 406
Query: 92 RVEMNGHLIGSKPVIITFVELKPGQRSK 119
EMN ++ KP+ + + K +RS+
Sbjct: 407 VTEMNQRMLAGKPLYVALAQRKEVRRSQ 434
>gi|146415246|ref|XP_001483593.1| hypothetical protein PGUG_04322 [Meyerozyma guilliermondii ATCC
6260]
Length = 631
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 93/308 (30%), Positives = 154/308 (50%), Gaps = 23/308 (7%)
Query: 5 GKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDV 64
G+ W + D R N + N + + NL P++DN+AL + F FG +
Sbjct: 126 GRPCRIMWSQ---RDPSLRRNGDGN-------IFIKNLHPAIDNKALHDTFSAFGRILSC 175
Query: 65 RVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPE 124
+VA ++ +S+ F + + T A+ A +NG L+ + V FV +R + E
Sbjct: 176 KVATDELGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREV---FVGKHVSKRDRESKFE 232
Query: 125 EKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAA 184
E + V+VKNL VD + + F FG + V + D+ GKS+GFGF+ F ++++A
Sbjct: 233 EMKANFTNVYVKNLAPEVDNAKFEEIFKPFGPVTSVHLETDQEGKSRGFGFVNFENHESA 292
Query: 185 EKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPSN 239
A+ EMN + I +V A+ + K+++ + L + +FV NL +
Sbjct: 293 LNAVKEMNDKEIDGQKLYVGRAQKKRERLDELKRLYESTRLEKLLKYQGVNLFVKNLDDS 352
Query: 240 INNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
I++ + EE F FGTITS+ ++ D K GF+ F P+ AT A++ MN + + KPL
Sbjct: 353 IDSEKLEEEFKPFGTITSARVMVDDAGKSKGFGFVCFSSPEEATKAITEMNQRMIQGKPL 412
Query: 295 KVTLSGTK 302
V L+ K
Sbjct: 413 YVALAQRK 420
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 88/298 (29%), Positives = 140/298 (46%), Gaps = 38/298 (12%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L PSV+ L F G + +RV R+ +S G+A + F+ A+ +A E+
Sbjct: 60 LYVGELNPSVNEALLFEIFSPIGQVSSIRVCRDAVTKKSLGYAYVNFHKHADGSRAIEEL 119
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N L+ +P I + + P R G +F+KNL +D + L F FG
Sbjct: 120 NYSLVDGRPCRIMWSQRDPSLRRNGDG---------NIFIKNLHPAIDNKALHDTFSAFG 170
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
I+ K+ DE G+SK FGF+ + + +AAE AI +NG ++ FV GK V
Sbjct: 171 RILSCKVATDELGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFV-------GKHVS 223
Query: 216 PKVKPPLLQPARKN--KIFVANLPSNINNSEFEELFARFGTITSSSLVSDKH-----IGF 268
+ + + + N ++V NL ++N++FEE+F FG +TS L +D+ GF
Sbjct: 224 KRDRESKFEEMKANFTNVYVKNLAPEVDNAKFEEIFKPFGPVTSVHLETDQEGKSRGFGF 283
Query: 269 IEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKPGVSITNPTKAPKKPAYIDEVKNV 326
+ F + A +AV MN + L V +A KK +DE+K +
Sbjct: 284 VNFENHESALNAVKEMNDKEIDGQKLYV--------------GRAQKKRERLDELKRL 327
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 52/88 (59%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L V NL+ S+D++ L EFK FGT+ RV + +S+GF + F++P EA KA
Sbjct: 339 YQGVNLFVKNLDDSIDSEKLEEEFKPFGTITSARVMVDDAGKSKGFGFVCFSSPEEATKA 398
Query: 92 RVEMNGHLIGSKPVIITFVELKPGQRSK 119
EMN +I KP+ + + K +RS+
Sbjct: 399 ITEMNQRMIQGKPLYVALAQRKDVRRSQ 426
>gi|332208761|ref|XP_003253477.1| PREDICTED: polyadenylate-binding protein 1-like [Nomascus
leucogenys]
Length = 590
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 133/269 (49%), Gaps = 37/269 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F G + +RV R+ S G+A I F PA+A++
Sbjct: 8 YPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN ++ +P+ I + + PG R VG +F+KNL +++D + L
Sbjct: 68 ALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVG---------NIFIKNLEDSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+ DE+G S+GFGF+ F +++AA++AI MNG ++ FV
Sbjct: 119 FSTFGNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRR 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ G + I+V NLP +++ ++LF++FG + S ++
Sbjct: 178 EREAEL--GARAL-----------EFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMR 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNG 286
D + GF+ F + A AV MNG
Sbjct: 225 DNSGHSRCFGFVNFEKHEEAQKAVVHMNG 253
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 84/309 (27%), Positives = 146/309 (47%), Gaps = 49/309 (15%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KG+ + W + D G R + N + + NLE S+DN+AL + F FG +
Sbjct: 78 KGQPIRIMWSQ---RDPGLRKSGVGN-------IFIKNLEDSIDNKALYDTFSTFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+VA +++ SRGF + F T A++A MNG L+ + V + + + +R +G
Sbjct: 128 CKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSR-REREAELGA 185
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
++ ++VKNL VDE+ L+ F +FG ++ VK++RD +G S+ FGF+ F ++
Sbjct: 186 RALEFTN--IYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEE 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNS 243
A+KA++ MNG+ + + A+ K++ R+N++
Sbjct: 244 AQKAVVHMNGKEVSGRLLYAGRAQ----KRM-----------ERQNEL----------KR 278
Query: 244 EFEEL----FARFGTITSSSLVSDKHIGFIEFIMPKH------ATHAVSTMNGHVFKSKP 293
FE++ R+ + +G E P+ A AV+ MNG + +KP
Sbjct: 279 RFEQMKQDRLRRYQLSRGPAQCWAWPVGRREAAQPQEPSFPTPAALAVTEMNGRIVGTKP 338
Query: 294 LKVTLSGTK 302
L V L+ K
Sbjct: 339 LYVALAQRK 347
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 78/170 (45%), Gaps = 16/170 (9%)
Query: 128 YKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRD-ENGKSKGFGFIQFFSYKAAEK 186
Y ++V +L V E L F G I+ +++ RD +S G+ +I F AE+
Sbjct: 8 YPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAER 67
Query: 187 AIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFE 246
A+ MN M++ + ++ PG L+ + IF+ NL +I+N
Sbjct: 68 ALDTMNFEMLKGQPIRIMWSQRDPG-----------LRKSGVGNIFIKNLEDSIDNKALY 116
Query: 247 ELFARFGTITSSSLVSDKH----IGFIEFIMPKHATHAVSTMNGHVFKSK 292
+ F+ FG I S + D+H GF+ F + A A++TMNG + +
Sbjct: 117 DTFSTFGNILSCKVACDEHGSRGFGFVHFETHEAAQQAINTMNGMLLNDR 166
>gi|315052346|ref|XP_003175547.1| hypothetical protein MGYG_03072 [Arthroderma gypseum CBS 118893]
gi|311340862|gb|EFR00065.1| hypothetical protein MGYG_03072 [Arthroderma gypseum CBS 118893]
Length = 782
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 81/269 (30%), Positives = 131/269 (48%), Gaps = 25/269 (9%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+PSV L F G + +RV R+ S G+A + +N A+ ++A ++
Sbjct: 60 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 119
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI +P I + + P R G VF+KNL +D + L F FG
Sbjct: 120 NYTLIKGRPCRIMWSQRDPALRKTGQG---------NVFIKNLDTAIDNKALHDTFAAFG 170
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ +DE G SKG+GF+ + + +AA AI +NG ++ FV G +
Sbjct: 171 NILSCKVAQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFV-------GHHIA 223
Query: 216 PKVKPPLLQPARKN--KIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIG 267
K + + + N I+V N+ ++ + EF LF ++G ITS++L D + G
Sbjct: 224 KKDRQSKFEEMKANFTNIYVKNVEQDVTDEEFRSLFEKYGEITSATLSRDNETGKSRGFG 283
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
F+ F + A+ AV +N + K + L V
Sbjct: 284 FVNFSDHEAASAAVEGLNEYELKGQKLYV 312
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 126/231 (54%), Gaps = 9/231 (3%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ ++DN+AL + F FG + +VA+++ S+G+ + + T A A +NG
Sbjct: 150 IKNLDTAIDNKALHDTFAAFGNILSCKVAQDEYGNSKGYGFVHYETAEAATNAIKHVNGM 209
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ K V + K ++SK EE + ++VKN+ + V +EE +S F K+G I
Sbjct: 210 LLNEKKVFVGHHIAKKDRQSK---FEEMKANFTNIYVKNVEQDVTDEEFRSLFEKYGEIT 266
Query: 159 EVKIVRD-ENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGK--KVF 215
+ RD E GKS+GFGF+ F ++AA A+ +N ++ +V A+ + ++
Sbjct: 267 SATLSRDNETGKSRGFGFVNFSDHEAASAAVEGLNEYELKGQKLYVGRAQKKHEREEELR 326
Query: 216 PKVKPPLLQPARKNK---IFVANLPSNINNSEFEELFARFGTITSSSLVSD 263
+ + ++ A K + +++ NL +I++ + ELF+ +G ITS+ ++ +
Sbjct: 327 KQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLRELFSSYGNITSAKVMRE 377
Score = 44.3 bits (103), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 35/64 (54%)
Query: 144 EEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFV 203
E++ KS G K + GKSKGFGF+ F + A KA+ EMN RM+ +V
Sbjct: 418 EDKSKSEEKTEGKTDGAKTEKKHLGKSKGFGFVCFSNPDEASKAVTEMNQRMVHGKPLYV 477
Query: 204 SLAE 207
+LA+
Sbjct: 478 ALAQ 481
Score = 38.9 bits (89), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 27/46 (58%)
Query: 74 SRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSK 119
S+GF + F+ P EA KA EMN ++ KP+ + + K ++S+
Sbjct: 444 SKGFGFVCFSNPDEASKAVTEMNQRMVHGKPLYVALAQRKDVRKSQ 489
>gi|168057049|ref|XP_001780529.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668007|gb|EDQ54623.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 647
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 88/280 (31%), Positives = 143/280 (51%), Gaps = 23/280 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ ++DN+AL + F FG + +VA + + +S+G+ + F A+ A ++N
Sbjct: 114 IFIKNLDKAIDNKALHDTFSAFGGILSCKVATDSSGQSKGYGFVQFEKEESAQSAIEKVN 173
Query: 97 GHLIGSKPVII-TFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
G L+ K V + FV + S V K + V+VKNL E ++ELK F +G
Sbjct: 174 GMLLNDKQVFVGPFVRRQERDLSGGVS------KFNNVYVKNLGENTTDDELKKVFGAYG 227
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
I ++RD GKSK FGF+ F A KA+ +NG+ +V A+ ++
Sbjct: 228 PISSAVVMRDNEGKSKCFGFVNFELADDAAKAVEALNGKKQDEKEWYVGRAQKKSEREAE 287
Query: 216 PKVKPPLLQPARKNKI--------FVANLPSNINNSEFEELFARFGTITSSSLVSD---- 263
+ K + RK++I ++ NL +++ + ELFA +GTITS ++ D
Sbjct: 288 LRAK---FEQERKSRIEKYQGVNLYLKNLDDAVDDEKLRELFAEYGTITSCKVMKDPQGQ 344
Query: 264 -KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
+ GF+ F P+ AT AV+ MN + SKPL V L+ K
Sbjct: 345 SRGSGFVAFSTPEEATRAVTEMNTKMVGSKPLYVALAQRK 384
Score = 107 bits (266), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 71/256 (27%), Positives = 125/256 (48%), Gaps = 22/256 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
++V +LE +V L F + G + +RV R+ S G+A + +++ +A +A +
Sbjct: 26 VYVGDLEHNVSEAQLYEIFSQTGPVVSIRVCRDLITRRSLGYAYVNYHSAQDATRALELL 85
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N + KP+ I F P R +F+KNL + +D + L F FG
Sbjct: 86 NFTPVNGKPIRIMFSHRDPSLRKSGAA---------NIFIKNLDKAIDNKALHDTFSAFG 136
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
I+ K+ D +G+SKG+GF+QF ++A+ AI ++NG ++ FV G V
Sbjct: 137 GILSCKVATDSSGQSKGYGFVQFEKEESAQSAIEKVNGMLLNDKQVFV-------GPFVR 189
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIE 270
+ + ++ N ++V NL N + E +++F +G I+S+ ++ D K GF+
Sbjct: 190 RQERDLSGGVSKFNNVYVKNLGENTTDDELKKVFGAYGPISSAVVMRDNEGKSKCFGFVN 249
Query: 271 FIMPKHATHAVSTMNG 286
F + A AV +NG
Sbjct: 250 FELADDAAKAVEALNG 265
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 95/185 (51%), Gaps = 9/185 (4%)
Query: 31 VYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKK 90
V K N ++V NL + + L F +G + V R+ +S+ F + F +A K
Sbjct: 199 VSKFNNVYVKNLGENTTDDELKKVFGAYGPISSAVVMRDNEGKSKCFGFVNFELADDAAK 258
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKV--------FVKNLVETV 142
A +NG K + + K +R + + +Q +K ++ ++KNL + V
Sbjct: 259 AVEALNGKKQDEKEWYVGRAQ-KKSEREAELRAKFEQERKSRIEKYQGVNLYLKNLDDAV 317
Query: 143 DEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTF 202
D+E+L+ F ++G I K+++D G+S+G GF+ F + + A +A+ EMN +M+ +
Sbjct: 318 DDEKLRELFAEYGTITSCKVMKDPQGQSRGSGFVAFSTPEEATRAVTEMNTKMVGSKPLY 377
Query: 203 VSLAE 207
V+LA+
Sbjct: 378 VALAQ 382
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 57/102 (55%), Gaps = 10/102 (9%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L++ NL+ +VD++ L F ++GT+ +V ++ +SRG + F+TP EA +A
Sbjct: 303 YQGVNLYLKNLDDAVDDEKLRELFAEYGTITSCKVMKDPQGQSRGSGFVAFSTPEEATRA 362
Query: 92 RVEMNGHLIGSKPVIITFVELKPGQRSK----------PVGP 123
EMN ++GSKP+ + + K +R + PVGP
Sbjct: 363 VTEMNTKMVGSKPLYVALAQRKEERRVRLQAAFAQMRTPVGP 404
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 80/177 (45%), Gaps = 17/177 (9%)
Query: 122 GPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFS 180
GP Q+ V+V +L V E +L F + G ++ +++ RD +S G+ ++ + S
Sbjct: 15 GPAPNQFVSTSVYVGDLEHNVSEAQLYEIFSQTGPVVSIRVCRDLITRRSLGYAYVNYHS 74
Query: 181 YKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNI 240
+ A +A+ +N + P + +F P L + N IF+ NL I
Sbjct: 75 AQDATRALELLNFTPVNGK----------PIRIMFSHRDPSLRKSGAAN-IFIKNLDKAI 123
Query: 241 NNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSK 292
+N + F+ FG I S + +D K GF++F + A A+ +NG + K
Sbjct: 124 DNKALHDTFSAFGGILSCKVATDSSGQSKGYGFVQFEKEESAQSAIEKVNGMLLNDK 180
>gi|238486326|ref|XP_002374401.1| polyadenylate-binding protein [Aspergillus flavus NRRL3357]
gi|220699280|gb|EED55619.1| polyadenylate-binding protein [Aspergillus flavus NRRL3357]
Length = 713
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 82/268 (30%), Positives = 130/268 (48%), Gaps = 24/268 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+PSV L F G + +RV R+ S G+A + +N A+ ++A ++
Sbjct: 51 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 110
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI KP I + + P R G VF+KNL +D + L F FG
Sbjct: 111 NYTLIKGKPCRIMWSQRDPALRKTGQG---------NVFIKNLDSAIDNKALHDTFAAFG 161
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ +DE G SKG+GF+ + + +AA AI +NG ++ FV G +
Sbjct: 162 NILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFV-------GHHIS 214
Query: 216 PKVKPPLLQPARKN--KIFVANLPSNINNSEFEELFARFGTITSSSLVSDKH-----IGF 268
K + + + N +++ N+ ++ EF ELF +FG ITS++L D+ GF
Sbjct: 215 KKDRQSKFEEMKANFTNVYIKNIDQDVTEEEFRELFEKFGEITSATLSRDQEGKSRGFGF 274
Query: 269 IEFIMPKHATHAVSTMNGHVFKSKPLKV 296
+ F + A AV MN +++ L V
Sbjct: 275 VNFSTHESAQAAVDEMNEKEIRTQKLYV 302
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 79/268 (29%), Positives = 141/268 (52%), Gaps = 18/268 (6%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK W + D R + N + + NL+ ++DN+AL + F FG +
Sbjct: 116 KGKPCRIMWSQ---RDPALRKTGQGN-------VFIKNLDSAIDNKALHDTFAAFGNILS 165
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+VA+++ S+G+ + + T A A +NG L+ K V + K ++SK
Sbjct: 166 CKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKF--- 222
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
EE + V++KN+ + V EEE + F KFG I + RD+ GKS+GFGF+ F ++++
Sbjct: 223 EEMKANFTNVYIKNIDQDVTEEEFRELFEKFGEITSATLSRDQEGKSRGFGFVNFSTHES 282
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAEIVPGK--KVFPKVKPPLLQPARKNK---IFVANLPS 238
A+ A+ EMN + I+ +V A+ + ++ + + L+ A K + ++V NL
Sbjct: 283 AQAAVDEMNEKEIRTQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTD 342
Query: 239 NINNSEFEELFARFGTITSSSLVSDKHI 266
++++ + ELF +GTITS+ ++ D +I
Sbjct: 343 DVDDEKLRELFGPYGTITSAKVMRDTNI 370
Score = 45.8 bits (107), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 27/40 (67%)
Query: 168 GKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
GKSKGFGF+ F S A KA+ EMN RM+ +V+LA+
Sbjct: 430 GKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQ 469
Score = 41.6 bits (96), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 28/46 (60%)
Query: 74 SRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSK 119
S+GF + F++P EA KA EMN ++ KP+ + + K +RS+
Sbjct: 432 SKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQ 477
>gi|302755232|ref|XP_002961040.1| hypothetical protein SELMODRAFT_74731 [Selaginella moellendorffii]
gi|300171979|gb|EFJ38579.1| hypothetical protein SELMODRAFT_74731 [Selaginella moellendorffii]
Length = 625
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 89/279 (31%), Positives = 146/279 (52%), Gaps = 22/279 (7%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S+DN+AL + F FG + ++A +++ S+G+ + F T A A ++N
Sbjct: 127 IFIKNLDESIDNKALHDTFIAFGPILSCKIA-HQDGRSKGYGFVHFETDEAANLAIEKVN 185
Query: 97 G-HLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
G L+G K + FV K R G + K VFVKNL + EEE+ HF FG
Sbjct: 186 GMQLVGKKVFVAKFV--KRSDRLAATG----ETKFTNVFVKNLDPEMAEEEINEHFSTFG 239
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-------I 208
I V I++DEN KSKGFGF+ F +AA A+ MN + + +V A+ I
Sbjct: 240 VITNVVIMKDENDKSKGFGFVNFDDPEAARAAVETMNNSQLGSRTIYVGRAQKKAEREQI 299
Query: 209 VPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----- 263
+ ++ F + + Q + ++V NL +I++ ++ F+R+G ITS+ ++ D
Sbjct: 300 L--RRQFEEKRMEQFQKYQGANLYVKNLDDSIDDETLKQEFSRYGNITSAKVMRDEKGIS 357
Query: 264 KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
K GF+ F P+ A+ A + NG + KP+ V ++ K
Sbjct: 358 KGFGFVCFTSPEEASRAATETNGLMINGKPIYVAMAQRK 396
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 80/266 (30%), Positives = 126/266 (47%), Gaps = 23/266 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L+ +V L F + G + VRV R+ S G+ + +++ A+A +A +
Sbjct: 39 LYVGDLDETVAETQLFTIFSQMGLVTSVRVCRDAVTRRSLGYGYVNYSSGADAVRAMEAL 98
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N I K + I + P R VG +F+KNL E++D + L FI FG
Sbjct: 99 NYTPINGKTIRIMWSHRDPSTRKSGVG---------NIFIKNLDESIDNKALHDTFIAFG 149
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
I+ KI ++G+SKG+GF+ F + +AA AI ++NG + FV+ K V
Sbjct: 150 PILSCKIAH-QDGRSKGYGFVHFETDEAANLAIEKVNGMQLVGKKVFVA-------KFVK 201
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIE 270
+ + +FV NL + E E F+ FG IT+ ++ D K GF+
Sbjct: 202 RSDRLAATGETKFTNVFVKNLDPEMAEEEINEHFSTFGVITNVVIMKDENDKSKGFGFVN 261
Query: 271 FIMPKHATHAVSTMNGHVFKSKPLKV 296
F P+ A AV TMN S+ + V
Sbjct: 262 FDDPEAARAAVETMNNSQLGSRTIYV 287
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 48/82 (58%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L+V NL+ S+D++ L EF ++G + +V R++ S+GF + F +P EA +A
Sbjct: 315 YQGANLYVKNLDDSIDDETLKQEFSRYGNITSAKVMRDEKGISKGFGFVCFTSPEEASRA 374
Query: 92 RVEMNGHLIGSKPVIITFVELK 113
E NG +I KP+ + + K
Sbjct: 375 ATETNGLMINGKPIYVAMAQRK 396
>gi|297841929|ref|XP_002888846.1| hypothetical protein ARALYDRAFT_339396 [Arabidopsis lyrata subsp.
lyrata]
gi|297334687|gb|EFH65105.1| hypothetical protein ARALYDRAFT_339396 [Arabidopsis lyrata subsp.
lyrata]
Length = 685
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 82/294 (27%), Positives = 158/294 (53%), Gaps = 22/294 (7%)
Query: 24 SNKE-NNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVF 82
SN++ + ++ + + + NL+PS+DN+AL F FGT+ +VA + S+G+ + F
Sbjct: 133 SNRDPSTRLSGKGNVFIKNLDPSIDNKALYETFSAFGTILSCKVAMDAVGRSKGYGFVQF 192
Query: 83 NTPAEAKKARVEMNGHLIGSKPVIIT-FVELKPGQRSKPVGPEEKQYKKDKVFVKNLVET 141
A+ A ++NG L+ K V + FV + RS+ + V+VKNL +
Sbjct: 193 EKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRSRSE----SGAVPRFTNVYVKNLPKE 248
Query: 142 VDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNST 201
+ ++ELK F K+G+I +++D++G S+ FGF+ F S +AA A+ +MNG + +
Sbjct: 249 ITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFESPEAAAVAVEKMNGISLGEDVL 308
Query: 202 FVSLA--------EIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFG 253
+V A E+ ++ F + + + + + +++ NL ++N+ + +E+F+ +G
Sbjct: 309 YVGRAQKKSEREEEL---RRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLKEMFSEYG 365
Query: 254 TITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
+TS ++ + + GF+ + P+ A+ A+S MNG + KPL V + K
Sbjct: 366 NVTSCKVMMNSQGLSRGFGFVAYSSPEEASRALSEMNGKMIGRKPLYVAFAQRK 419
Score = 127 bits (319), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 80/273 (29%), Positives = 129/273 (47%), Gaps = 41/273 (15%)
Query: 30 KVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAK 89
+ + + L+V +L+PSVD L++ F + ++ VRV R+ S G+A + F P +A
Sbjct: 53 QTHPNSSLYVGDLDPSVDEPQLLDLFNQVAPVQTVRVCRDLTRRSLGYAYVNFANPEDAS 112
Query: 90 KARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKS 149
+A +N I +P+ I P R K VF+KNL ++D + L
Sbjct: 113 RAMDSLNYAPIRDRPIRIMLSNRDPSTRLS---------GKGNVFIKNLDPSIDNKALYE 163
Query: 150 HFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFV------ 203
F FG I+ K+ D G+SKG+GF+QF + A+ AI ++NG ++ FV
Sbjct: 164 TFSAFGTILSCKVAMDAVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRR 223
Query: 204 -----SLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSS 258
S + VP R ++V NLP I + E ++ F ++G I+S+
Sbjct: 224 QDRSRSESGAVP----------------RFTNVYVKNLPKEITDDELKKTFGKYGDISSA 267
Query: 259 SLVSD-----KHIGFIEFIMPKHATHAVSTMNG 286
++ D + GF+ F P+ A AV MNG
Sbjct: 268 VVMKDQSGNSRSFGFVNFESPEAAAVAVEKMNG 300
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 106/196 (54%), Gaps = 15/196 (7%)
Query: 23 RSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVF 82
RS E+ V + ++V NL + + L F K+G + V ++++ SR F + F
Sbjct: 226 RSRSESGAVPRFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNF 285
Query: 83 NTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKV--------- 133
+P A A +MNG +G + + + K +R + + ++++++++
Sbjct: 286 ESPEAAAVAVEKMNGISLGEDVLYVGRAQKK-SEREEEL---RRKFEQERISRFEKLQGS 341
Query: 134 --FVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEM 191
++KNL ++V++E+LK F ++GN+ K++ + G S+GFGF+ + S + A +A+ EM
Sbjct: 342 NLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSSPEEASRALSEM 401
Query: 192 NGRMIQHNSTFVSLAE 207
NG+MI +V+ A+
Sbjct: 402 NGKMIGRKPLYVAFAQ 417
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 50/82 (60%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L++ NL+ SV+++ L F ++G + +V N SRGF + +++P EA +A EMN
Sbjct: 343 LYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSSPEEASRALSEMN 402
Query: 97 GHLIGSKPVIITFVELKPGQRS 118
G +IG KP+ + F + K +R+
Sbjct: 403 GKMIGRKPLYVAFAQRKEERRA 424
>gi|393245425|gb|EJD52935.1| polyadenylate binding protein [Auricularia delicata TFB-10046 SS5]
Length = 665
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 83/276 (30%), Positives = 140/276 (50%), Gaps = 13/276 (4%)
Query: 34 ENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARV 93
+ + + NL+ +DN+AL + F FG + +VA +++ S+G+ + + T A+ A
Sbjct: 134 QGNIFIKNLDEQIDNKALHDTFAAFGNVLSCKVATDEHGNSKGYGFVHYETAEAAENAIK 193
Query: 94 EMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIK 153
+NG L+ K V + + +R + + QY ++VKNL + +E + F K
Sbjct: 194 SVNGMLLNDKKVFVGH-HIPRKERQSKIDEMKAQYT--NIYVKNLDPELGQEGFEELFGK 250
Query: 154 FGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPG-- 211
FGNI + +DE GKS+GFGF+ F S++ A A+ ++ I +V+ A+
Sbjct: 251 FGNITSAALSKDEEGKSRGFGFVNFESHEQAAAAVETLHDTEINGRKLYVARAQKKSERE 310
Query: 212 ---KKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----- 263
+K + K L + +++ NL +I++ + F FGTITS ++ D
Sbjct: 311 DELRKSYENAKQEKLSKYQGVNLYIKNLEDDIDDEKLRAEFEPFGTITSCKVMRDEKNTS 370
Query: 264 KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299
K GF+ F P AT AVS MN + SKPL V+L+
Sbjct: 371 KGFGFVCFSSPDEATKAVSEMNNKMIGSKPLYVSLA 406
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 83/272 (30%), Positives = 132/272 (48%), Gaps = 20/272 (7%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+PSV L F G + +RV R+ S G+A + + A+ ++A ++
Sbjct: 49 LYVGELDPSVTEAMLFEVFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALDQL 108
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI ++ I + + P R G +F+KNL E +D + L F FG
Sbjct: 109 NYSLIKNRACRIMWSQRDPALRKTGQG---------NIFIKNLDEQIDNKALHDTFAAFG 159
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
N++ K+ DE+G SKG+GF+ + + +AAE AI +NG ++ FV +P K+
Sbjct: 160 NVLSCKVATDEHGNSKGYGFVHYETAEAAENAIKSVNGMLLNDKKVFV--GHHIPRKERQ 217
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIE 270
K+ A+ I+V NL + FEELF +FG ITS++L D + GF+
Sbjct: 218 SKIDE---MKAQYTNIYVKNLDPELGQEGFEELFGKFGNITSAALSKDEEGKSRGFGFVN 274
Query: 271 FIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F + A AV T++ + L V + K
Sbjct: 275 FESHEQAAAAVETLHDTEINGRKLYVARAQKK 306
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 97/178 (54%), Gaps = 7/178 (3%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
++V NL+P + + F KFG + +++++ +SRGF + F + +A A ++
Sbjct: 230 IYVKNLDPELGQEGFEELFGKFGNITSAALSKDEEGKSRGFGFVNFESHEQAAAAVETLH 289
Query: 97 GHLIGSKPVIITFVELKPGQ-----RSKPVGPEEK--QYKKDKVFVKNLVETVDEEELKS 149
I + + + + K + +S +EK +Y+ +++KNL + +D+E+L++
Sbjct: 290 DTEINGRKLYVARAQKKSEREDELRKSYENAKQEKLSKYQGVNLYIKNLEDDIDDEKLRA 349
Query: 150 HFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
F FG I K++RDE SKGFGF+ F S A KA+ EMN +MI +VSLA+
Sbjct: 350 EFEPFGTITSCKVMRDEKNTSKGFGFVCFSSPDEATKAVSEMNNKMIGSKPLYVSLAQ 407
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 56/88 (63%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L++ NLE +D++ L EF+ FGT+ +V R++ + S+GF + F++P EA KA
Sbjct: 328 YQGVNLYIKNLEDDIDDEKLRAEFEPFGTITSCKVMRDEKNTSKGFGFVCFSSPDEATKA 387
Query: 92 RVEMNGHLIGSKPVIITFVELKPGQRSK 119
EMN +IGSKP+ ++ + + +R +
Sbjct: 388 VSEMNNKMIGSKPLYVSLAQRREVRRQQ 415
>gi|395333502|gb|EJF65879.1| polyadenylate binding protein [Dichomitus squalens LYAD-421 SS1]
Length = 664
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 86/307 (28%), Positives = 151/307 (49%), Gaps = 21/307 (6%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KG+ W + D R + N + + NL+ +DN+AL + F FG +
Sbjct: 111 KGRACRIMWSQ---RDPALRKTGQGN-------IFIKNLDEQIDNKALHDTFAAFGNVLS 160
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIIT-FVELKPGQRSKPVG 122
+VA +++ S+G+ + + T A+ A +NG L+ K V + + K R +
Sbjct: 161 CKVATDEHGRSKGYGFVHYETAEAAETAIKAVNGMLLNDKKVYVGHHISRKASSRERQSK 220
Query: 123 PEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYK 182
EE + + ++VKNL V +++ F +FGN+ I DE G+S+GFGF+ F +++
Sbjct: 221 LEEMKAQFTNIYVKNLDPEVTQDDFVKLFEQFGNVTSAVIQTDEQGQSRGFGFVNFETHE 280
Query: 183 AAEKAIIEMNGRMIQHNSTFVSLAEIVPG-----KKVFPKVKPPLLQPARKNKIFVANLP 237
A+KA+ ++ FVS A+ +K + + K + + +++ NL
Sbjct: 281 EAQKAVETLHDSEYHGRKLFVSRAQKKAEREEELRKSYEQAKVEKMSKYQGVNLYIKNLE 340
Query: 238 SNINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSK 292
+I++ + F FG+ITS+ ++ D K GF+ F P AT AV+ MN + SK
Sbjct: 341 DDIDDERLRQEFEPFGSITSAKVMRDEKGTSKGFGFVCFSSPDEATKAVAEMNNKMIGSK 400
Query: 293 PLKVTLS 299
PL V+L+
Sbjct: 401 PLYVSLA 407
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/274 (27%), Positives = 135/274 (49%), Gaps = 20/274 (7%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+P+V L F G + +RV R+ S G+A + + A+ ++A ++
Sbjct: 46 LYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEQL 105
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI + I + + P R G +F+KNL E +D + L F FG
Sbjct: 106 NYSLIKGRACRIMWSQRDPALRKTGQG---------NIFIKNLDEQIDNKALHDTFAAFG 156
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVS--LAEIVPGKK 213
N++ K+ DE+G+SKG+GF+ + + +AAE AI +NG ++ +V ++ ++
Sbjct: 157 NVLSCKVATDEHGRSKGYGFVHYETAEAAETAIKAVNGMLLNDKKVYVGHHISRKASSRE 216
Query: 214 VFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKH-----IGF 268
K++ A+ I+V NL + +F +LF +FG +TS+ + +D+ GF
Sbjct: 217 RQSKLEE---MKAQFTNIYVKNLDPEVTQDDFVKLFEQFGNVTSAVIQTDEQGQSRGFGF 273
Query: 269 IEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
+ F + A AV T++ + + L V+ + K
Sbjct: 274 VNFETHEEAQKAVETLHDSEYHGRKLFVSRAQKK 307
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 98/179 (54%), Gaps = 9/179 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
++V NL+P V + F++FG + + ++ +SRGF + F T EA+KA ++
Sbjct: 231 IYVKNLDPEVTQDDFVKLFEQFGNVTSAVIQTDEQGQSRGFGFVNFETHEEAQKAVETLH 290
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDK--------VFVKNLVETVDEEELK 148
+ + ++ + K +R + + +Q K +K +++KNL + +D+E L+
Sbjct: 291 DSEYHGRKLFVSRAQ-KKAEREEELRKSYEQAKVEKMSKYQGVNLYIKNLEDDIDDERLR 349
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
F FG+I K++RDE G SKGFGF+ F S A KA+ EMN +MI +VSLA+
Sbjct: 350 QEFEPFGSITSAKVMRDEKGTSKGFGFVCFSSPDEATKAVAEMNNKMIGSKPLYVSLAQ 408
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 62/106 (58%), Gaps = 5/106 (4%)
Query: 19 DEGARSNKENNKV-----YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDE 73
+E R + E KV Y+ L++ NLE +D++ L EF+ FG++ +V R++
Sbjct: 311 EEELRKSYEQAKVEKMSKYQGVNLYIKNLEDDIDDERLRQEFEPFGSITSAKVMRDEKGT 370
Query: 74 SRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSK 119
S+GF + F++P EA KA EMN +IGSKP+ ++ + + +R +
Sbjct: 371 SKGFGFVCFSSPDEATKAVAEMNNKMIGSKPLYVSLAQRREVRRQQ 416
>gi|449547299|gb|EMD38267.1| hypothetical protein CERSUDRAFT_113433 [Ceriporiopsis subvermispora
B]
Length = 679
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 91/311 (29%), Positives = 154/311 (49%), Gaps = 33/311 (10%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KG+ W + D R + N + + NL+ +DN+AL + F FG +
Sbjct: 115 KGRACRIMWSQ---RDPALRKTGQGN-------IFIKNLDEGIDNKALHDTFAAFGNVLS 164
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+VA +++ S+G+ + + T A A +NG L+ K V + + ++SK
Sbjct: 165 CKVATDEHGRSKGYGFVHYETAEAADTAIKAVNGMLLNDKKVYVGPHISRKERQSK---I 221
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
EE + + V+VKN+ V +EE + F +FGN+ I RDE G+SKGFGF+ F ++
Sbjct: 222 EEMKAQFTNVYVKNIDAEVTDEEFRQLFEQFGNVTSAVIQRDEEGRSKGFGFVNFEKHEE 281
Query: 184 AEKAI-----IEMNGRMIQHNSTFVSLAEIVPG-----KKVFPKVKPPLLQPARKNKIFV 233
A+K + E+NG+ + FV+ A+ +K + + K L + +++
Sbjct: 282 AQKGVESLHDFELNGKKL-----FVTRAQKKAEREEELRKSYEQAKNEKLSKYQGVNLYI 336
Query: 234 ANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHV 288
NL +++ + F FGTITS+ ++ D K GF+ F P AT AV+ MN +
Sbjct: 337 KNLEDEVDDERLRQEFEPFGTITSAKVMRDEKGSSKGFGFVCFSSPDEATKAVAEMNNKM 396
Query: 289 FKSKPLKVTLS 299
+KPL V+L+
Sbjct: 397 IGTKPLYVSLA 407
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 79/282 (28%), Positives = 135/282 (47%), Gaps = 40/282 (14%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+P+V L F G + +RV R+ S G+A + + A+ ++A ++
Sbjct: 50 LYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEQL 109
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI + I + + P R G +F+KNL E +D + L F FG
Sbjct: 110 NYSLIKGRACRIMWSQRDPALRKTGQG---------NIFIKNLDEGIDNKALHDTFAAFG 160
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
N++ K+ DE+G+SKG+GF+ + + +AA+ AI +NG ++ KKV+
Sbjct: 161 NVLSCKVATDEHGRSKGYGFVHYETAEAADTAIKAVNGMLLND-------------KKVY 207
Query: 216 PKVKPPLLQPARKNKI----------FVANLPSNINNSEFEELFARFGTITSSSLVSD-- 263
V P + + R++KI +V N+ + + + EF +LF +FG +TS+ + D
Sbjct: 208 --VGPHISRKERQSKIEEMKAQFTNVYVKNIDAEVTDEEFRQLFEQFGNVTSAVIQRDEE 265
Query: 264 ---KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
K GF+ F + A V +++ K L VT + K
Sbjct: 266 GRSKGFGFVNFEKHEEAQKGVESLHDFELNGKKLFVTRAQKK 307
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 96/179 (53%), Gaps = 9/179 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
++V N++ V ++ F++FG + + R++ S+GF + F EA+K ++
Sbjct: 231 VYVKNIDAEVTDEEFRQLFEQFGNVTSAVIQRDEEGRSKGFGFVNFEKHEEAQKGVESLH 290
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKV--------FVKNLVETVDEEELK 148
+ K + +T + K +R + + +Q K +K+ ++KNL + VD+E L+
Sbjct: 291 DFELNGKKLFVTRAQ-KKAEREEELRKSYEQAKNEKLSKYQGVNLYIKNLEDEVDDERLR 349
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
F FG I K++RDE G SKGFGF+ F S A KA+ EMN +MI +VSLA+
Sbjct: 350 QEFEPFGTITSAKVMRDEKGSSKGFGFVCFSSPDEATKAVAEMNNKMIGTKPLYVSLAQ 408
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 55/88 (62%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L++ NLE VD++ L EF+ FGT+ +V R++ S+GF + F++P EA KA
Sbjct: 329 YQGVNLYIKNLEDEVDDERLRQEFEPFGTITSAKVMRDEKGSSKGFGFVCFSSPDEATKA 388
Query: 92 RVEMNGHLIGSKPVIITFVELKPGQRSK 119
EMN +IG+KP+ ++ + + +R +
Sbjct: 389 VAEMNNKMIGTKPLYVSLAQRREVRRQQ 416
>gi|302658195|ref|XP_003020804.1| hypothetical protein TRV_05080 [Trichophyton verrucosum HKI 0517]
gi|291184669|gb|EFE40186.1| hypothetical protein TRV_05080 [Trichophyton verrucosum HKI 0517]
Length = 816
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 81/269 (30%), Positives = 131/269 (48%), Gaps = 25/269 (9%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+PSV L F G + +RV R+ S G+A + +N A+ ++A ++
Sbjct: 76 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 135
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI +P I + + P R G VF+KNL +D + L F FG
Sbjct: 136 NYTLIKGRPCRIMWSQRDPALRKTGQG---------NVFIKNLDTAIDNKALHDTFAAFG 186
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ +DE G SKG+GF+ + + +AA AI +NG ++ FV G +
Sbjct: 187 NILSCKVAQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFV-------GHHIA 239
Query: 216 PKVKPPLLQPARKN--KIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIG 267
K + + + N I+V N+ ++ + EF LF ++G ITS++L D + G
Sbjct: 240 KKDRQSKFEEMKANFTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFG 299
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
F+ F + A+ AV +N + K + L V
Sbjct: 300 FVNFSDHEAASAAVEALNEYELKGQKLYV 328
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 71/266 (26%), Positives = 135/266 (50%), Gaps = 19/266 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KG+ W + D R + N + + NL+ ++DN+AL + F FG +
Sbjct: 141 KGRPCRIMWSQ---RDPALRKTGQGN-------VFIKNLDTAIDNKALHDTFAAFGNILS 190
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+VA+++ S+G+ + + T A A +NG L+ K V + K ++SK
Sbjct: 191 CKVAQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSK---F 247
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRD-ENGKSKGFGFIQFFSYK 182
EE + ++VKN+ + V +EE + F K+G I + RD E GKS+GFGF+ F ++
Sbjct: 248 EEMKANFTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHE 307
Query: 183 AAEKAIIEMNGRMIQHNSTFVSLAEIVPGK--KVFPKVKPPLLQPARKNK---IFVANLP 237
AA A+ +N ++ +V A+ + ++ + + ++ A K + +++ NL
Sbjct: 308 AASAAVEALNEYELKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLS 367
Query: 238 SNINNSEFEELFARFGTITSSSLVSD 263
+I++ + ELF+ +G ITS+ ++ +
Sbjct: 368 DDIDDEKLRELFSSYGNITSAKVMRE 393
Score = 44.7 bits (104), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 40/77 (51%)
Query: 131 DKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIE 190
DK K ++ E++ KS G K + GKSKGFGF+ F + A KA+ E
Sbjct: 419 DKSEEKGESKSESEDKSKSEEKTEGKTESAKPEKKHLGKSKGFGFVCFSNPDEASKAVTE 478
Query: 191 MNGRMIQHNSTFVSLAE 207
MN RM+ +V+LA+
Sbjct: 479 MNQRMVHGKPLYVALAQ 495
Score = 38.9 bits (89), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 27/46 (58%)
Query: 74 SRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSK 119
S+GF + F+ P EA KA EMN ++ KP+ + + K ++S+
Sbjct: 458 SKGFGFVCFSNPDEASKAVTEMNQRMVHGKPLYVALAQRKDVRKSQ 503
>gi|157125851|ref|XP_001654419.1| polyadenylate-binding protein [Aedes aegypti]
gi|157125853|ref|XP_001654420.1| polyadenylate-binding protein [Aedes aegypti]
gi|94468824|gb|ABF18261.1| polyadenylate-binding protein [Aedes aegypti]
gi|108873484|gb|EAT37709.1| AAEL010318-PB [Aedes aegypti]
gi|108873485|gb|EAT37710.1| AAEL010318-PA [Aedes aegypti]
Length = 628
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 86/275 (31%), Positives = 154/275 (56%), Gaps = 16/275 (5%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ ++DN+A+ + F FG + +VA+++ S+G+ + F T A + ++NG
Sbjct: 94 IKNLDKNIDNKAMYDTFSAFGNILSCKVAQDEKGNSKGYGFVHFETEESANTSIEKVNGM 153
Query: 99 LIGSKPVII-TFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNI 157
L+ K V + F+ K +R K +G + K + V+VKN + +++E LK F K+G I
Sbjct: 154 LLNGKKVYVGRFIPRK--EREKELGEKAKLF--TNVYVKNFGDELNDETLKEMFEKYGTI 209
Query: 158 IEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNST-FVSLAE-----IVPG 211
+++ ++GKS+GFGF+ F + ++AE A+ E+NG+ + +V A+ +
Sbjct: 210 TSHRVM-IKDGKSRGFGFVAFENPESAEHAVQELNGKELGEGKILYVGRAQKKNERQMEL 268
Query: 212 KKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIG 267
K+ F ++K L + ++V NL +I++ + F+ FGTITS+ ++ + K G
Sbjct: 269 KRRFEQLKMERLTRYQGVNLYVKNLDDSIDDERLRKEFSPFGTITSAKVMLEEGRSKGFG 328
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F+ F + AT AV+ MNG + SKPL V L+ K
Sbjct: 329 FVCFSAAEEATKAVTEMNGRIVGSKPLYVALAQRK 363
Score = 124 bits (310), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 78/257 (30%), Positives = 131/257 (50%), Gaps = 23/257 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L + L +F G + +RV R+ S G+A + F PA+A++A M
Sbjct: 4 LYVGDLHADITEAILFEKFSSAGPVLSIRVCRDVVTRRSLGYAYVNFQQPADAERALDTM 63
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI +P+ I + + P R VG VF+KNL + +D + + F FG
Sbjct: 64 NFDLIKGRPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKNIDNKAMYDTFSAFG 114
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ +DE G SKG+GF+ F + ++A +I ++NG ++ N V + +P K+
Sbjct: 115 NILSCKVAQDEKGNSKGYGFVHFETEESANTSIEKVNGMLL--NGKKVYVGRFIPRKERE 172
Query: 216 PKV--KPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLV----SDKHIGFI 269
++ K L ++V N +N+ +E+F ++GTITS ++ + GF+
Sbjct: 173 KELGEKAKLF-----TNVYVKNFGDELNDETLKEMFEKYGTITSHRVMIKDGKSRGFGFV 227
Query: 270 EFIMPKHATHAVSTMNG 286
F P+ A HAV +NG
Sbjct: 228 AFENPESAEHAVQELNG 244
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 100/179 (55%), Gaps = 10/179 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
++V N ++++ L F+K+GT+ RV K+ +SRGF + F P A+ A E+N
Sbjct: 185 VYVKNFGDELNDETLKEMFEKYGTITSHRVM-IKDGKSRGFGFVAFENPESAEHAVQELN 243
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKV--------FVKNLVETVDEEELK 148
G +G ++ K +R + +Q K +++ +VKNL +++D+E L+
Sbjct: 244 GKELGEGKILYVGRAQKKNERQMELKRRFEQLKMERLTRYQGVNLYVKNLDDSIDDERLR 303
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
F FG I K++ +E G+SKGFGF+ F + + A KA+ EMNGR++ +V+LA+
Sbjct: 304 KEFSPFGTITSAKVMLEE-GRSKGFGFVCFSAAEEATKAVTEMNGRIVGSKPLYVALAQ 361
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 51/87 (58%), Gaps = 1/87 (1%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L+V NL+ S+D++ L EF FGT+ +V + S+GF + F+ EA KA
Sbjct: 283 YQGVNLYVKNLDDSIDDERLRKEFSPFGTITSAKVMLEEG-RSKGFGFVCFSAAEEATKA 341
Query: 92 RVEMNGHLIGSKPVIITFVELKPGQRS 118
EMNG ++GSKP+ + + K +++
Sbjct: 342 VTEMNGRIVGSKPLYVALAQRKEDRKA 368
>gi|395818359|ref|XP_003782600.1| PREDICTED: polyadenylate-binding protein 1, partial [Otolemur
garnettii]
Length = 539
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 94/334 (28%), Positives = 149/334 (44%), Gaps = 65/334 (19%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPG----------------------------------- 115
A MN +I KPV I + + P
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKXXXXXXXXXSKGYGFVHFETQEAAERAIEKMN 127
Query: 116 ------------------QRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNI 157
+R +G K++ V++KN E +D+E LK F KFG
Sbjct: 128 GMLLNDRKVFVGRFKSRKEREAELGARAKEF--TNVYIKNFGEDMDDERLKDLFGKFGPA 185
Query: 158 IEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPGK 212
+ VK++ DE+GKSKGFGF+ F ++ A+ MNG+ + +V A+ K
Sbjct: 186 LSVKVMTDESGKSKGFGFVSFERHEDAQXXXXXMNGKELNGKQIYVGRAQKKVERQTELK 245
Query: 213 KVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGF 268
+ F ++K + + ++V NL I++ + F+ FGTITS+ ++ + K GF
Sbjct: 246 RKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGF 305
Query: 269 IEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
+ F P+ AT AV+ MNG + +KPL V L+ K
Sbjct: 306 VCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 339
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 72/250 (28%), Positives = 122/250 (48%), Gaps = 36/250 (14%)
Query: 21 GARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAII 80
GAR+ KE VY + N +D++ L + F KFG V+V +++ +S+GF +
Sbjct: 152 GARA-KEFTNVY------IKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFV 204
Query: 81 VFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKV------- 133
F +A+ MNG + K + + + K +R + + +Q K+D++
Sbjct: 205 SFERHEDAQXXXXXMNGKELNGKQIYVGRAQKK-VERQTELKRKFEQMKQDRITRYQGVN 263
Query: 134 -FVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMN 192
+VKNL + +D+E L+ F FG I K++ E G+SKGFGF+ F S + A KA+ EMN
Sbjct: 264 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMN 322
Query: 193 GRMIQHNSTFVSLAEIVPGKKVF-----------------PKVKPPLLQPARKNKIFVAN 235
GR++ +V+LA+ ++ P + P QPA + F+A
Sbjct: 323 GRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINP--YQPAPPSGYFMAA 380
Query: 236 LPSNINNSEF 245
+P N + +
Sbjct: 381 IPQTQNRAAY 390
>gi|357154719|ref|XP_003576878.1| PREDICTED: polyadenylate-binding protein 2-like [Brachypodium
distachyon]
Length = 653
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 85/276 (30%), Positives = 141/276 (51%), Gaps = 15/276 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S+DN+AL + F FG + +VA + + ES+G+ + + A A ++N
Sbjct: 124 IFIKNLDKSIDNKALYDTFCVFGNILSCKVATDASGESKGYGFVQYERDEAAHAAIEKLN 183
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G L+ K V + K + + P K + VFVKNL ET E++L+ F KFG
Sbjct: 184 GMLMNDKKVYVGPFIRKQERDNSP-----GNVKFNNVFVKNLSETTTEDDLREIFGKFGT 238
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEI-----VPG 211
I V ++R+ +G+SK FGF+ F S A A+ ++NG+ +V A+ +
Sbjct: 239 ITSVVVMREGDGRSKCFGFVNFESPDEAALAVQDLNGKKFDDKEWYVGRAQKKSEREMEL 298
Query: 212 KKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHI 266
K+ F K + +++ NL +++ + ELFA FG ITS ++ D +
Sbjct: 299 KEKFEKNLQETADKYQNTNLYLKNLDDTVDDEKLRELFAEFGAITSCKVMRDSNGASRGS 358
Query: 267 GFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ F + A+ A++ MN + SKPL V L+ K
Sbjct: 359 GFVAFKSAEDASRALAEMNNKMVGSKPLYVALAQRK 394
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 82/273 (30%), Positives = 130/273 (47%), Gaps = 34/273 (12%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKK 90
+ L+V +L+ SV + L + F + G + VRV R+ +S G+A + +NTPA+A +
Sbjct: 31 FPATSLYVGDLDMSVQDAQLFDVFAQIGGVVSVRVCRDVTTRKSLGYAYVNYNTPADAAR 90
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A +N I +P+ I + P R +F+KNL +++D + L
Sbjct: 91 ALEMLNFTPINGRPIRIMYSNRDPSLRKSGTA---------NIFIKNLDKSIDNKALYDT 141
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+ D +G+SKG+GF+Q+ +AA AI ++NG ++ +V
Sbjct: 142 FCVFGNILSCKVATDASGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFIRKQ 201
Query: 206 -AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD- 263
+ PG F N +FV NL + E+F +FGTITS ++ +
Sbjct: 202 ERDNSPGNVKF-------------NNVFVKNLSETTTEDDLREIFGKFGTITSVVVMREG 248
Query: 264 ----KHIGFIEFIMPKHATHAVSTMNGHVFKSK 292
K GF+ F P A AV +NG F K
Sbjct: 249 DGRSKCFGFVNFESPDEAALAVQDLNGKKFDDK 281
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 97/192 (50%), Gaps = 9/192 (4%)
Query: 23 RSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVF 82
R N N K N + V NL + L F KFGT+ V V R + S+ F + F
Sbjct: 203 RDNSPGN--VKFNNVFVKNLSETTTEDDLREIFGKFGTITSVVVMREGDGRSKCFGFVNF 260
Query: 83 NTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQR-------SKPVGPEEKQYKKDKVFV 135
+P EA A ++NG K + + K + K + +Y+ +++
Sbjct: 261 ESPDEAALAVQDLNGKKFDDKEWYVGRAQKKSEREMELKEKFEKNLQETADKYQNTNLYL 320
Query: 136 KNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRM 195
KNL +TVD+E+L+ F +FG I K++RD NG S+G GF+ F S + A +A+ EMN +M
Sbjct: 321 KNLDDTVDDEKLRELFAEFGAITSCKVMRDSNGASRGSGFVAFKSAEDASRALAEMNNKM 380
Query: 196 IQHNSTFVSLAE 207
+ +V+LA+
Sbjct: 381 VGSKPLYVALAQ 392
>gi|328871935|gb|EGG20305.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
fasciculatum]
Length = 567
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 87/305 (28%), Positives = 153/305 (50%), Gaps = 24/305 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK W + D R + N + + NL+ SVD++AL + F FG +
Sbjct: 75 KGKACRIMWSQ---RDPSLRKSGVGN-------IFIKNLDKSVDHKALFDTFSAFGNILS 124
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V ++ + S+GF + + + A KA +++NG +I + V + P + SK G
Sbjct: 125 CKVVTDETNVSKGFGFVHYESQDSADKAIMKVNGMIINDQKVFVG-----PFKSSKERG- 178
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
+ ++ K V+VKNL E V+EEEL+ + +G I + I+ DE KSKGFGF F +
Sbjct: 179 QTQELKYTNVYVKNLSEDVNEEELRDLLVPYGKITNLTIMSDEKSKSKGFGFANFETPDE 238
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNS 243
A+ + NG++ +V A+ ++ ++K + +++ N+ +I++
Sbjct: 239 AKNCVEAENGKLFHGKVIYVGRAQKKMEREA--ELKHKFETKYQGVNLYIKNIDDSIDSD 296
Query: 244 EFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVT 297
+ FA +GTITS+ ++ D K GF+ + P A+ AV+ M+G + +KPL V
Sbjct: 297 KLRSTFAAYGTITSAKVMRDDKSTSSKGFGFVCYTTPDEASKAVAEMHGRMVGNKPLYVA 356
Query: 298 LSGTK 302
+ K
Sbjct: 357 FAQRK 361
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 81/271 (29%), Positives = 134/271 (49%), Gaps = 23/271 (8%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDE-SRGFAIIVFNTPAEAKK 90
+ + L+V +L V + L F + G + ++R+ R+ S +A + ++ PA+A++
Sbjct: 5 FSSSSLYVGDLHQDVTDSQLFEIFNQVGPVANLRICRDTTTRRSLNYAYVNYHNPADAER 64
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A +N L+ K I + + P R VG +F+KNL ++VD + L
Sbjct: 65 ALDTLNNTLVKGKACRIMWSQRDPSLRKSGVG---------NIFIKNLDKSVDHKALFDT 115
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVP 210
F FGNI+ K+V DE SKGFGF+ + S +A+KAI+++NG +I FV P
Sbjct: 116 FSAFGNILSCKVVTDETNVSKGFGFVHYESQDSADKAIMKVNGMIINDQKVFVG-----P 170
Query: 211 GKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KH 265
K + + Q + ++V NL ++N E +L +G IT+ +++SD K
Sbjct: 171 FKSSKERGQ---TQELKYTNVYVKNLSEDVNEEELRDLLVPYGKITNLTIMSDEKSKSKG 227
Query: 266 IGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
GF F P A + V NG +F K + V
Sbjct: 228 FGFANFETPDEAKNCVEAENGKLFHGKVIYV 258
>gi|260944998|ref|XP_002616797.1| hypothetical protein CLUG_04038 [Clavispora lusitaniae ATCC 42720]
gi|238850446|gb|EEQ39910.1| hypothetical protein CLUG_04038 [Clavispora lusitaniae ATCC 42720]
Length = 620
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 97/309 (31%), Positives = 149/309 (48%), Gaps = 25/309 (8%)
Query: 5 GKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDV 64
G+ W + D R N + N + + NL P +DN+AL + F FG +
Sbjct: 119 GRPCRIMWSQ---RDPSLRRNGDGN-------IFIKNLHPDIDNKALHDTFSAFGRILSC 168
Query: 65 RVARNKNDESRGFAIIVFNTPAEAKKARVE-MNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+VA +++ S+ F + + T AEA A +E +NG + + V FV ++ +
Sbjct: 169 KVATDEHGRSKCFGFVHYET-AEAADAAIENVNGMSLNDREV---FVGKHISKKDRVAKF 224
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
EE + VFVKN E EL + F +G I + +D GKSKGFGFI F ++ A
Sbjct: 225 EEMKANFTNVFVKNFGSDFTEAELAAMFEPYGKITSLYFEKDSEGKSKGFGFINFENHDA 284
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A KA+ E+N + + +V A+ I KK + + L + +FV NL
Sbjct: 285 AVKAVEELNDKEVNGQKIYVGRAQKKRERIEELKKQYETTRLEKLSKYQGVNLFVKNLDD 344
Query: 239 NINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKP 293
++ + EE F FGTITS+ ++ D K GF+ F P+ AT A++ MN + KP
Sbjct: 345 SLTSEMLEEEFKPFGTITSAKVMVDETGKSKGFGFVCFSAPEEATKAITEMNQRMVLGKP 404
Query: 294 LKVTLSGTK 302
L V L+ K
Sbjct: 405 LYVALAQRK 413
Score = 107 bits (266), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 75/257 (29%), Positives = 118/257 (45%), Gaps = 24/257 (9%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L PSV+ L F G + +RV R+ +S G+A + ++ + ++A ++
Sbjct: 53 LYVGELNPSVNEAVLYEIFSPLGQVSSIRVCRDAVTKKSLGYAYVNYHKHEDGERALEQL 112
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI +P I + + P R G +F+KNL +D + L F FG
Sbjct: 113 NYSLIDGRPCRIMWSQRDPSLRRNGDG---------NIFIKNLHPDIDNKALHDTFSAFG 163
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
I+ K+ DE+G+SK FGF+ + + +AA+ AI +NG + FV GK +
Sbjct: 164 RILSCKVATDEHGRSKCFGFVHYETAEAADAAIENVNGMSLNDREVFV-------GKHIS 216
Query: 216 PKVKPPLLQPARKN--KIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGF 268
K + + + N +FV N S+ +E +F +G ITS D K GF
Sbjct: 217 KKDRVAKFEEMKANFTNVFVKNFGSDFTEAELAAMFEPYGKITSLYFEKDSEGKSKGFGF 276
Query: 269 IEFIMPKHATHAVSTMN 285
I F A AV +N
Sbjct: 277 INFENHDAAVKAVEELN 293
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 51/88 (57%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L V NL+ S+ ++ L EFK FGT+ +V ++ +S+GF + F+ P EA KA
Sbjct: 332 YQGVNLFVKNLDDSLTSEMLEEEFKPFGTITSAKVMVDETGKSKGFGFVCFSAPEEATKA 391
Query: 92 RVEMNGHLIGSKPVIITFVELKPGQRSK 119
EMN ++ KP+ + + K +RS+
Sbjct: 392 ITEMNQRMVLGKPLYVALAQRKDVRRSQ 419
>gi|297741250|emb|CBI32381.3| unnamed protein product [Vitis vinifera]
Length = 766
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 86/277 (31%), Positives = 147/277 (53%), Gaps = 17/277 (6%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ +D++AL + F FG + +VA + + S+G + F++ A+KA ++N
Sbjct: 259 IFIKNLDKGIDHKALHDTFSAFGNILSCKVATDASGMSKGHGFVQFDSEEAAQKAIDKLN 318
Query: 97 GHLIGSKPVIIT-FVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
G L+ K V + FV + +R + E K + VFVKN+ E + EE+L F +FG
Sbjct: 319 GMLLNDKQVFVGPFV--RKQERESTINKE----KFNNVFVKNISEGMTEEDLTRIFGEFG 372
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEI-----VP 210
I V ++RD +GKSK FGF+ F + A ++ +NG+ +V A+ +
Sbjct: 373 PITSVVVMRDGDGKSKCFGFVNFENVDDAAMSVEALNGQKFDDKEWYVGKAQKKSEREIE 432
Query: 211 GKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KH 265
K F + + + +++ NL +I + + +ELFA+FGTITS ++ D +
Sbjct: 433 LKSRFEQNMKEAVDKFQGANLYIKNLDDSIGDDKLKELFAQFGTITSCKVMRDPNGLSRG 492
Query: 266 IGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ F P+ A+ A++ MN + SKPL V L+ K
Sbjct: 493 SGFVAFSSPEEASRALAEMNSKMVVSKPLYVALAQRK 529
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 82/292 (28%), Positives = 132/292 (45%), Gaps = 27/292 (9%)
Query: 16 ISDDEGARS--NKENN---KVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK 70
+ D EG S N E N + L+V +L+ +V + L + F + + +RV R+
Sbjct: 145 VQDHEGLLSGTNDEPNIGPSRFASASLYVGDLDLNVTDSQLHDLFSQLAQVVSIRVCRDS 204
Query: 71 ND-ESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYK 129
S G+ + + +A +A +N + KP+ I + P R G
Sbjct: 205 TTHRSLGYGYVNYTDLEDAARALDVLNFTPLNGKPIRIMYSHRDPSIRKSGTG------- 257
Query: 130 KDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAII 189
+F+KNL + +D + L F FGNI+ K+ D +G SKG GF+QF S +AA+KAI
Sbjct: 258 --NIFIKNLDKGIDHKALHDTFSAFGNILSCKVATDASGMSKGHGFVQFDSEEAAQKAID 315
Query: 190 EMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELF 249
++NG ++ FV G V + + + + N +FV N+ + + +F
Sbjct: 316 KLNGMLLNDKQVFV-------GPFVRKQERESTINKEKFNNVFVKNISEGMTEEDLTRIF 368
Query: 250 ARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
FG ITS ++ D K GF+ F A +V +NG F K V
Sbjct: 369 GEFGPITSVVVMRDGDGKSKCFGFVNFENVDDAAMSVEALNGQKFDDKEWYV 420
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 93/183 (50%), Gaps = 9/183 (4%)
Query: 33 KENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKAR 92
K N + V N+ + + L F +FG + V V R+ + +S+ F + F +A +
Sbjct: 346 KFNNVFVKNISEGMTEEDLTRIFGEFGPITSVVVMRDGDGKSKCFGFVNFENVDDAAMSV 405
Query: 93 VEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKV--------FVKNLVETVDE 144
+NG K + + K +R + +Q K+ V ++KNL +++ +
Sbjct: 406 EALNGQKFDDKEWYVGKAQ-KKSEREIELKSRFEQNMKEAVDKFQGANLYIKNLDDSIGD 464
Query: 145 EELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVS 204
++LK F +FG I K++RD NG S+G GF+ F S + A +A+ EMN +M+ +V+
Sbjct: 465 DKLKELFAQFGTITSCKVMRDPNGLSRGSGFVAFSSPEEASRALAEMNSKMVVSKPLYVA 524
Query: 205 LAE 207
LA+
Sbjct: 525 LAQ 527
>gi|354544113|emb|CCE40835.1| hypothetical protein CPAR2_108740 [Candida parapsilosis]
Length = 650
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 89/309 (28%), Positives = 152/309 (49%), Gaps = 23/309 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
+G+ W + D AR + + N + + NL P++DN+AL + F FG +
Sbjct: 130 EGRPCRIMWSQ---RDPSARRSGDGN-------IFIKNLHPAIDNKALHDTFSAFGRILS 179
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+VA + +S+ F + + T A+ A +NG L+ + V + K + SK
Sbjct: 180 CKVATDDMGQSKCFGFVHYETGEAAEAAIENVNGMLLNDREVFVGKHVSKKDRESKF--- 236
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
EE + ++VKN+ E+E + F +G I + + +D++GKSKGFGF+ + +K+
Sbjct: 237 EEMKANYTNIYVKNIDLGFTEKEFEELFAPYGKITSIYLEKDQDGKSKGFGFVNYEEHKS 296
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A A+ +N + I +V A+ KK + ++ L + +F+ NL
Sbjct: 297 AVDAVEALNDKEINGQKIYVGRAQKKRERTEELKKQYEAIRLEKLSKYQGVNLFIKNLDD 356
Query: 239 NINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKP 293
I++ + EE F FGTITS+ ++ D K GF+ F P+ AT A++ MN + KP
Sbjct: 357 QIDSEKLEEEFKPFGTITSAKVMVDDAGKSKGFGFVCFSTPEEATKAITEMNQRMINGKP 416
Query: 294 LKVTLSGTK 302
L V L+ K
Sbjct: 417 LYVALAQRK 425
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 81/257 (31%), Positives = 122/257 (47%), Gaps = 24/257 (9%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L PSV+ L F G + +RV R+ +S G+A + ++ + +KA E+
Sbjct: 65 LYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVTKKSLGYAYVNYHKFEDGEKAIDEL 124
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N L+ +P I + + P R G +F+KNL +D + L F FG
Sbjct: 125 NYSLVEGRPCRIMWSQRDPSARRSGDG---------NIFIKNLHPAIDNKALHDTFSAFG 175
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
I+ K+ D+ G+SK FGF+ + + +AAE AI +NG ++ FV GK V
Sbjct: 176 RILSCKVATDDMGQSKCFGFVHYETGEAAEAAIENVNGMLLNDREVFV-------GKHVS 228
Query: 216 PKVKPPLLQPARKN--KIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGF 268
K + + + N I+V N+ EFEELFA +G ITS L D K GF
Sbjct: 229 KKDRESKFEEMKANYTNIYVKNIDLGFTEKEFEELFAPYGKITSIYLEKDQDGKSKGFGF 288
Query: 269 IEFIMPKHATHAVSTMN 285
+ + K A AV +N
Sbjct: 289 VNYEEHKSAVDAVEALN 305
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 51/88 (57%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L + NL+ +D++ L EFK FGT+ +V + +S+GF + F+TP EA KA
Sbjct: 344 YQGVNLFIKNLDDQIDSEKLEEEFKPFGTITSAKVMVDDAGKSKGFGFVCFSTPEEATKA 403
Query: 92 RVEMNGHLIGSKPVIITFVELKPGQRSK 119
EMN +I KP+ + + K +RS+
Sbjct: 404 ITEMNQRMINGKPLYVALAQRKDVRRSQ 431
>gi|414588969|tpg|DAA39540.1| TPA: hypothetical protein ZEAMMB73_983793 [Zea mays]
Length = 281
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 79/261 (30%), Positives = 132/261 (50%), Gaps = 22/261 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKND-ESRGFAIIVFNTPAEAKKARVEM 95
L+V +L SV + L + F + G + VRV R+ N +S G+A + +N +A +A +
Sbjct: 37 LYVGDLHESVQDAQLFDVFSQVGGVVSVRVCRDINSRKSLGYAYVNYNNQGDAARALELL 96
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N I KP+ I + P R G +F+KNL +++D + L F FG
Sbjct: 97 NFTPINGKPIRIMYSNRDPSSRKSGTG---------NIFIKNLDKSIDNKALYDTFCAFG 147
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ KI D +G+S+G+GF+QF ++A+ AI ++NG +I FV G V
Sbjct: 148 NILSCKIATDPSGESRGYGFVQFEKDESAQSAIDKLNGMLINDKKVFV-------GPFVR 200
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIE 270
+ + + + + ++V NL + + E +E+F ++GTITS+ ++ D + GF+
Sbjct: 201 KQDRENVSSNIKFSNVYVKNLSDTVTDDELKEMFGKYGTITSAVVMRDSDGKSRCFGFVN 260
Query: 271 FIMPKHATHAVSTMNGHVFKS 291
F A AV +N V S
Sbjct: 261 FENADAAAQAVQELNDGVVSS 281
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 80/172 (46%), Gaps = 21/172 (12%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENG-KSKGFGFIQFFSYKAAEKAIIEM 191
++V +L E+V + +L F + G ++ V++ RD N KS G+ ++ + + A +A+ +
Sbjct: 37 LYVGDLHESVQDAQLFDVFSQVGGVVSVRVCRDINSRKSLGYAYVNYNNQGDAARALELL 96
Query: 192 NGRMIQHNSTFVSLAEIVPGK--KVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELF 249
N I GK ++ + P + + IF+ NL +I+N + F
Sbjct: 97 NFTPIN-------------GKPIRIMYSNRDPSSRKSGTGNIFIKNLDKSIDNKALYDTF 143
Query: 250 ARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
FG I S + +D + GF++F + A A+ +NG + K + V
Sbjct: 144 CAFGNILSCKIATDPSGESRGYGFVQFEKDESAQSAIDKLNGMLINDKKVFV 195
>gi|326478130|gb|EGE02140.1| polyadenylate-binding protein [Trichophyton equinum CBS 127.97]
Length = 782
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 81/269 (30%), Positives = 131/269 (48%), Gaps = 25/269 (9%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+PSV L F G + +RV R+ S G+A + +N A+ ++A ++
Sbjct: 60 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 119
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI +P I + + P R G VF+KNL +D + L F FG
Sbjct: 120 NYTLIKGRPCRIMWSQRDPALRKTGQG---------NVFIKNLDTAIDNKALHDTFAAFG 170
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ +DE G SKG+GF+ + + +AA AI +NG ++ FV G +
Sbjct: 171 NILSCKVAQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFV-------GHHIA 223
Query: 216 PKVKPPLLQPARKN--KIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIG 267
K + + + N I+V N+ ++ + EF LF ++G ITS++L D + G
Sbjct: 224 KKDRQSKFEEMKANFTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFG 283
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
F+ F + A+ AV +N + K + L V
Sbjct: 284 FVNFSDHEAASAAVEALNEYELKGQKLYV 312
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 125/231 (54%), Gaps = 9/231 (3%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ ++DN+AL + F FG + +VA+++ S+G+ + + T A A +NG
Sbjct: 150 IKNLDTAIDNKALHDTFAAFGNILSCKVAQDEYGNSKGYGFVHYETAEAATNAIKHVNGM 209
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ K V + K ++SK EE + ++VKN+ + V +EE + F K+G I
Sbjct: 210 LLNEKKVFVGHHIAKKDRQSK---FEEMKANFTNIYVKNVEQDVTDEEFRGLFEKYGEIT 266
Query: 159 EVKIVRD-ENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGK--KVF 215
+ RD E GKS+GFGF+ F ++AA A+ +N ++ +V A+ + ++
Sbjct: 267 SATLSRDNETGKSRGFGFVNFSDHEAASAAVEALNEYELKGQKLYVGRAQKKHEREEELR 326
Query: 216 PKVKPPLLQPARKNK---IFVANLPSNINNSEFEELFARFGTITSSSLVSD 263
+ + ++ A K + +++ NL +I++ + ELF+ +G ITS+ ++ +
Sbjct: 327 KQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLRELFSSYGNITSAKVMRE 377
Score = 45.4 bits (106), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 40/77 (51%)
Query: 131 DKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIE 190
DK K ++ E++ KS G K + GKSKGFGF+ F + A KA+ E
Sbjct: 403 DKSEEKGEAKSESEDKSKSEEKTEGKTESAKPEKKHLGKSKGFGFVCFSNPDEASKAVTE 462
Query: 191 MNGRMIQHNSTFVSLAE 207
MN RM+ +V+LA+
Sbjct: 463 MNQRMVHGKPLYVALAQ 479
Score = 38.9 bits (89), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 27/46 (58%)
Query: 74 SRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSK 119
S+GF + F+ P EA KA EMN ++ KP+ + + K ++S+
Sbjct: 442 SKGFGFVCFSNPDEASKAVTEMNQRMVHGKPLYVALAQRKDVRKSQ 487
>gi|156360993|ref|XP_001625306.1| predicted protein [Nematostella vectensis]
gi|156212133|gb|EDO33206.1| predicted protein [Nematostella vectensis]
Length = 584
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 81/273 (29%), Positives = 148/273 (54%), Gaps = 13/273 (4%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S+DN++L + F FG + ++A+++ +G+ + F T A +A ++
Sbjct: 103 IFIKNLDKSIDNKSLYDTFSAFGNILSCKIAQDELGNPKGYGFVHFETEDAALEAIARVD 162
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G L+ K V + K +R + +G + K++ V+VKN + +D+E++K + G
Sbjct: 163 GMLLNDKKVFVGRWMSKK-ERIEKMGTQPKKFTN--VYVKNFGDDMDDEQMKEICAEAGK 219
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFP 216
I+ +K++ D GKSKGFGF+ F + + AE+A+ +NG+ I + A+ +
Sbjct: 220 IVSLKVMTDPEGKSKGFGFVSFETPEEAEEAVNVLNGKEIGGRRLWAGRAKKRAERAAEV 279
Query: 217 KVKPPLLQPARKNK-----IFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHI 266
K + + R N+ +++ NL I++ E F+ +GTI+S+ ++ D K
Sbjct: 280 KAEIEKKRQERINRFQGVNLYIKNLDDPIDDERLREEFSPYGTISSAKVMKDDKGNSKGF 339
Query: 267 GFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299
GF+ F P+ AT AV+ MNG + SKPL V L+
Sbjct: 340 GFVCFSSPEEATKAVTEMNGRILISKPLYVALA 372
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 79/261 (30%), Positives = 128/261 (49%), Gaps = 20/261 (7%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F G++ +RV R+ S G+A + F P A+K
Sbjct: 10 YPIASLYVGDLAPDVTEAMLYEKFSTAGSVLSIRVCRDLVTRRSLGYAYVNFQQPGHAEK 69
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN I +P I + + P R VG +F+KNL +++D + L
Sbjct: 70 ALDTMNFDPIKGRPCRIMWQQRDPSLRKSGVG---------NIFIKNLDKSIDNKSLYDT 120
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVP 210
F FGNI+ KI +DE G KG+GF+ F + AA +AI ++G ++ FV +
Sbjct: 121 FSAFGNILSCKIAQDELGNPKGYGFVHFETEDAALEAIARVDGMLLNDKKVFV--GRWMS 178
Query: 211 GKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KH 265
K+ K+ QP + ++V N ++++ + +E+ A G I S +++D K
Sbjct: 179 KKERIEKMG---TQPKKFTNVYVKNFGDDMDDEQMKEICAEAGKIVSLKVMTDPEGKSKG 235
Query: 266 IGFIEFIMPKHATHAVSTMNG 286
GF+ F P+ A AV+ +NG
Sbjct: 236 FGFVSFETPEEAEEAVNVLNG 256
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 101/179 (56%), Gaps = 9/179 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
++V N +D++ + + G + ++V + +S+GF + F TP EA++A +N
Sbjct: 196 VYVKNFGDDMDDEQMKEICAEAGKIVSLKVMTDPEGKSKGFGFVSFETPEEAEEAVNVLN 255
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKV--------FVKNLVETVDEEELK 148
G IG + + + K +R+ V E ++ +++++ ++KNL + +D+E L+
Sbjct: 256 GKEIGGRRLWAGRAK-KRAERAAEVKAEIEKKRQERINRFQGVNLYIKNLDDPIDDERLR 314
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
F +G I K+++D+ G SKGFGF+ F S + A KA+ EMNGR++ +V+LA+
Sbjct: 315 EEFSPYGTISSAKVMKDDKGNSKGFGFVCFSSPEEATKAVTEMNGRILISKPLYVALAQ 373
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 47/77 (61%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L++ NL+ +D++ L EF +GT+ +V ++ S+GF + F++P EA KA EMN
Sbjct: 299 LYIKNLDDPIDDERLREEFSPYGTISSAKVMKDDKGNSKGFGFVCFSSPEEATKAVTEMN 358
Query: 97 GHLIGSKPVIITFVELK 113
G ++ SKP+ + + +
Sbjct: 359 GRILISKPLYVALAQRR 375
>gi|390597906|gb|EIN07305.1| polyadenylate binding protein [Punctularia strigosozonata HHB-11173
SS5]
Length = 668
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 83/306 (27%), Positives = 156/306 (50%), Gaps = 23/306 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KG+ W + D R + N + + NL+ ++DN+AL + F FG +
Sbjct: 119 KGRACRIMWSQ---RDPALRKTGQGN-------IFIKNLDDAIDNKALHDTFAAFGNVLS 168
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+VA ++ S+G+ + + T A+ A +NG L+ K V + K +++K +
Sbjct: 169 CKVATDEMGRSKGYGFVHYETNEAAESAIKAVNGMLLNDKKVYVGHHVSKKDRQAK-LDE 227
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
++KQ+ V+VKN+ +++E + F FGN+ + RDE G+S+GFGF+ F +++
Sbjct: 228 QKKQFT--NVYVKNIDPEANDDEFRELFTPFGNVTSAVLQRDEEGRSRGFGFVNFETHEE 285
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAEIVPG-----KKVFPKVKPPLLQPARKNKIFVANLPS 238
A+KA+ ++ + FVS A+ ++ + + K + + +++ NL
Sbjct: 286 AQKAVDTLHDSDFKGRKLFVSRAQKKSEREEELRRSYEQAKMEKMSKYQGVNLYIKNLED 345
Query: 239 NINNSEFEELFARFGTITSSSLV-----SDKHIGFIEFIMPKHATHAVSTMNGHVFKSKP 293
++++ + + F FG ITS+ ++ + K GF+ F P AT AV+ MN + SKP
Sbjct: 346 DVDDEKLRDAFEPFGAITSAKVMRTEGGTSKGFGFVCFSSPDEATKAVAEMNNKMMGSKP 405
Query: 294 LKVTLS 299
L V+L+
Sbjct: 406 LYVSLA 411
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 81/274 (29%), Positives = 132/274 (48%), Gaps = 24/274 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+P+V L F G + +RV R+ S G+A + + A+ ++A ++
Sbjct: 54 LYVGELDPTVSEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYFNAADGERALEQL 113
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI + I + + P R G +F+KNL + +D + L F FG
Sbjct: 114 NYSLIKGRACRIMWSQRDPALRKTGQG---------NIFIKNLDDAIDNKALHDTFAAFG 164
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
N++ K+ DE G+SKG+GF+ + + +AAE AI +NG ++ +V G V
Sbjct: 165 NVLSCKVATDEMGRSKGYGFVHYETNEAAESAIKAVNGMLLNDKKVYV-------GHHVS 217
Query: 216 PKVKPPLLQPARKN--KIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGF 268
K + L +K ++V N+ N+ EF ELF FG +TS+ L D + GF
Sbjct: 218 KKDRQAKLDEQKKQFTNVYVKNIDPEANDDEFRELFTPFGNVTSAVLQRDEEGRSRGFGF 277
Query: 269 IEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
+ F + A AV T++ FK + L V+ + K
Sbjct: 278 VNFETHEEAQKAVDTLHDSDFKGRKLFVSRAQKK 311
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 95/179 (53%), Gaps = 9/179 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
++V N++P ++ F FG + + R++ SRGF + F T EA+KA ++
Sbjct: 235 VYVKNIDPEANDDEFRELFTPFGNVTSAVLQRDEEGRSRGFGFVNFETHEEAQKAVDTLH 294
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDK--------VFVKNLVETVDEEELK 148
+ + ++ + K +R + + +Q K +K +++KNL + VD+E+L+
Sbjct: 295 DSDFKGRKLFVSRAQ-KKSEREEELRRSYEQAKMEKMSKYQGVNLYIKNLEDDVDDEKLR 353
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
F FG I K++R E G SKGFGF+ F S A KA+ EMN +M+ +VSLA+
Sbjct: 354 DAFEPFGAITSAKVMRTEGGTSKGFGFVCFSSPDEATKAVAEMNNKMMGSKPLYVSLAQ 412
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 53/88 (60%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L++ NLE VD++ L + F+ FG + +V R + S+GF + F++P EA KA
Sbjct: 333 YQGVNLYIKNLEDDVDDEKLRDAFEPFGAITSAKVMRTEGGTSKGFGFVCFSSPDEATKA 392
Query: 92 RVEMNGHLIGSKPVIITFVELKPGQRSK 119
EMN ++GSKP+ ++ + + +R +
Sbjct: 393 VAEMNNKMMGSKPLYVSLAQRREVRRQQ 420
>gi|302500992|ref|XP_003012489.1| hypothetical protein ARB_01449 [Arthroderma benhamiae CBS 112371]
gi|291176047|gb|EFE31849.1| hypothetical protein ARB_01449 [Arthroderma benhamiae CBS 112371]
Length = 801
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 81/269 (30%), Positives = 131/269 (48%), Gaps = 25/269 (9%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+PSV L F G + +RV R+ S G+A + +N A+ ++A ++
Sbjct: 60 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 119
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI +P I + + P R G VF+KNL +D + L F FG
Sbjct: 120 NYTLIKGRPCRIMWSQRDPALRKTGQG---------NVFIKNLDTAIDNKALHDTFAAFG 170
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ +DE G SKG+GF+ + + +AA AI +NG ++ FV G +
Sbjct: 171 NILSCKVAQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFV-------GHHIA 223
Query: 216 PKVKPPLLQPARKN--KIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIG 267
K + + + N I+V N+ ++ + EF LF ++G ITS++L D + G
Sbjct: 224 KKDRQSKFEEMKANFTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFG 283
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
F+ F + A+ AV +N + K + L V
Sbjct: 284 FVNFSDHEAASAAVEALNEYELKGQKLYV 312
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 71/266 (26%), Positives = 135/266 (50%), Gaps = 19/266 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KG+ W + D R + N + + NL+ ++DN+AL + F FG +
Sbjct: 125 KGRPCRIMWSQ---RDPALRKTGQGN-------VFIKNLDTAIDNKALHDTFAAFGNILS 174
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+VA+++ S+G+ + + T A A +NG L+ K V + K ++SK
Sbjct: 175 CKVAQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSK---F 231
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRD-ENGKSKGFGFIQFFSYK 182
EE + ++VKN+ + V +EE + F K+G I + RD E GKS+GFGF+ F ++
Sbjct: 232 EEMKANFTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHE 291
Query: 183 AAEKAIIEMNGRMIQHNSTFVSLAEIVPGK--KVFPKVKPPLLQPARKNK---IFVANLP 237
AA A+ +N ++ +V A+ + ++ + + ++ A K + +++ NL
Sbjct: 292 AASAAVEALNEYELKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLS 351
Query: 238 SNINNSEFEELFARFGTITSSSLVSD 263
+I++ + ELF+ +G ITS+ ++ +
Sbjct: 352 DDIDDEKLRELFSSYGNITSAKVMRE 377
Score = 44.3 bits (103), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 40/77 (51%)
Query: 131 DKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIE 190
DK K ++ E++ KS G K + GKSKGFGF+ F + A KA+ E
Sbjct: 403 DKSEEKGESKSESEDKSKSEEKTEGKTESTKPEKKHLGKSKGFGFVCFSNPDEASKAVTE 462
Query: 191 MNGRMIQHNSTFVSLAE 207
MN RM+ +V+LA+
Sbjct: 463 MNQRMVHGKPLYVALAQ 479
Score = 38.5 bits (88), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 27/46 (58%)
Query: 74 SRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSK 119
S+GF + F+ P EA KA EMN ++ KP+ + + K ++S+
Sbjct: 442 SKGFGFVCFSNPDEASKAVTEMNQRMVHGKPLYVALAQRKDVRKSQ 487
>gi|426391822|ref|XP_004062265.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2 [Gorilla
gorilla gorilla]
gi|164651982|gb|ABY64766.1| ePAB [Homo sapiens]
Length = 330
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 81/261 (31%), Positives = 134/261 (51%), Gaps = 21/261 (8%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F G + +RV R+ S G+A I F PA+A++
Sbjct: 8 YPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN ++ +P+ I + + PG R VG +F+KNL +++D + L
Sbjct: 68 ALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVG---------NIFIKNLEDSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVP 210
F FGNI+ K+ DE+G S+GFGF+ F +++AA++AI MNG ++ FV
Sbjct: 119 FSTFGNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFV--GHFKS 175
Query: 211 GKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KH 265
++ ++ L+ I+V NLP +++ ++LF++FG + S ++ D +
Sbjct: 176 RREREAELGARALEFT---NIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRC 232
Query: 266 IGFIEFIMPKHATHAVSTMNG 286
GF+ F + A AV MNG
Sbjct: 233 FGFVNFEKHEEAQKAVVHMNG 253
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 76/260 (29%), Positives = 138/260 (53%), Gaps = 19/260 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KG+ + W + D G R + N + + NLE S+DN+AL + F FG +
Sbjct: 78 KGQPIRIMWSQ---RDPGLRKSGVGN-------IFIKNLEDSIDNKALYDTFSTFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+VA +++ SRGF + F T A++A MNG L+ + V + + + +R +G
Sbjct: 128 CKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRR-EREAELGA 185
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
++ ++VKNL VDE+ L+ F +FG ++ VK++RD +G S+ FGF+ F ++
Sbjct: 186 RALEFTN--IYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEE 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAEIV-----PGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A+KA++ MNG+ + + A+ K+ F ++K L+ + ++V NL
Sbjct: 244 AQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDD 303
Query: 239 NINNSEFEELFARFGTITSS 258
+I++ + + F+ +G ITS+
Sbjct: 304 SIDDDKLRKEFSPYGVITSA 323
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 79/169 (46%), Gaps = 16/169 (9%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRD-ENGKSKGFGFIQFFSYKAAEKAIIEM 191
++V +L V E L F G I+ +++ RD +S G+ +I F AE+A+ M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 192 NGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFAR 251
N M++ + ++ PG L+ + IF+ NL +I+N + F+
Sbjct: 73 NFEMLKGQPIRIMWSQRDPG-----------LRKSGVGNIFIKNLEDSIDNKALYDTFST 121
Query: 252 FGTITSSSLVSDKH----IGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
FG I S + D+H GF+ F + A A++TMNG + + + V
Sbjct: 122 FGNILSCKVACDEHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFV 170
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 70/136 (51%), Gaps = 9/136 (6%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
++V NL VD Q L + F +FG + V+V R+ + SR F + F EA+KA V MN
Sbjct: 193 IYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMN 252
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKV--------FVKNLVETVDEEELK 148
G + + + + K +R + +Q K+D++ +VKNL +++D+++L+
Sbjct: 253 GKEVSGRLLYAGRAQ-KRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLR 311
Query: 149 SHFIKFGNIIEVKIVR 164
F +G I K R
Sbjct: 312 KEFSPYGVITSAKKRR 327
>gi|170044609|ref|XP_001849934.1| polyadenylate-binding protein 1 [Culex quinquefasciatus]
gi|167867688|gb|EDS31071.1| polyadenylate-binding protein 1 [Culex quinquefasciatus]
Length = 628
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 87/275 (31%), Positives = 153/275 (55%), Gaps = 16/275 (5%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ ++DN+A+ + F FG + +VA+++ S+G+ + F T A + ++NG
Sbjct: 94 IKNLDKNIDNKAMYDTFSAFGNILSCKVAQDEKGNSKGYGFVHFETEESANTSIEKVNGM 153
Query: 99 LIGSKPVII-TFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNI 157
L+ +K V + F+ K +R K +G + K + V+VKN + + +E LK F K+G I
Sbjct: 154 LLNAKKVFVGRFIPRK--EREKELGEKAKLF--TNVYVKNFGDELTDESLKEMFEKYGTI 209
Query: 158 IEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNST-FVSLAE-----IVPG 211
+++ EN KS+GFGF+ F + ++AE A+ E+NG+ + +V A+ +
Sbjct: 210 TSHRVMIKEN-KSRGFGFVAFENPESAEVAVQELNGKELGDGKVLYVGRAQKKNERQMEL 268
Query: 212 KKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIG 267
K+ F ++K L + ++V NL +I++ + F+ FGTITS+ ++ + K G
Sbjct: 269 KRRFEQLKMERLTRYQGVNLYVKNLDDSIDDERLRKEFSPFGTITSAKVMLEEGRSKGFG 328
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F+ F + AT AV+ MNG + SKPL V L+ K
Sbjct: 329 FVCFSAAEEATKAVTEMNGRIVGSKPLYVALAQRK 363
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 76/257 (29%), Positives = 128/257 (49%), Gaps = 23/257 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L + L +F G + +RV R+ S G+A + F PA+A++A M
Sbjct: 4 LYVGDLHADITEAMLFEKFSSAGPVLSIRVCRDVVTRRSLGYAYVNFQQPADAERALDTM 63
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI +P+ I + + P R VG VF+KNL + +D + + F FG
Sbjct: 64 NFDLIKGRPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKNIDNKAMYDTFSAFG 114
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ +DE G SKG+GF+ F + ++A +I ++NG ++ FV +P K+
Sbjct: 115 NILSCKVAQDEKGNSKGYGFVHFETEESANTSIEKVNGMLLNAKKVFV--GRFIPRKERE 172
Query: 216 PKV--KPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLV----SDKHIGFI 269
++ K L ++V N + + +E+F ++GTITS ++ + GF+
Sbjct: 173 KELGEKAKLF-----TNVYVKNFGDELTDESLKEMFEKYGTITSHRVMIKENKSRGFGFV 227
Query: 270 EFIMPKHATHAVSTMNG 286
F P+ A AV +NG
Sbjct: 228 AFENPESAEVAVQELNG 244
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 100/179 (55%), Gaps = 10/179 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
++V N + +++L F+K+GT+ RV +N +SRGF + F P A+ A E+N
Sbjct: 185 VYVKNFGDELTDESLKEMFEKYGTITSHRVMIKEN-KSRGFGFVAFENPESAEVAVQELN 243
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKV--------FVKNLVETVDEEELK 148
G +G V+ K +R + +Q K +++ +VKNL +++D+E L+
Sbjct: 244 GKELGDGKVLYVGRAQKKNERQMELKRRFEQLKMERLTRYQGVNLYVKNLDDSIDDERLR 303
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
F FG I K++ +E G+SKGFGF+ F + + A KA+ EMNGR++ +V+LA+
Sbjct: 304 KEFSPFGTITSAKVMLEE-GRSKGFGFVCFSAAEEATKAVTEMNGRIVGSKPLYVALAQ 361
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 51/87 (58%), Gaps = 1/87 (1%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L+V NL+ S+D++ L EF FGT+ +V + S+GF + F+ EA KA
Sbjct: 283 YQGVNLYVKNLDDSIDDERLRKEFSPFGTITSAKVMLEEG-RSKGFGFVCFSAAEEATKA 341
Query: 92 RVEMNGHLIGSKPVIITFVELKPGQRS 118
EMNG ++GSKP+ + + K +++
Sbjct: 342 VTEMNGRIVGSKPLYVALAQRKEDRKA 368
>gi|241948533|ref|XP_002416989.1| ARS consensus binding protein, putative; poly(A)-binding protein,
putative; polyadenylate tail-binding protein, putative;
polyadenylate-binding protein, cytoplasmic and nuclear,
putative [Candida dubliniensis CD36]
gi|223640327|emb|CAX44577.1| ARS consensus binding protein, putative [Candida dubliniensis CD36]
Length = 627
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 91/309 (29%), Positives = 154/309 (49%), Gaps = 23/309 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
+G+ W + D AR + + N + + NL P++DN+AL + F FG +
Sbjct: 118 EGRPCRIMWSQ---RDPSARRSGDGN-------IFIKNLHPAIDNKALHDTFSAFGKILS 167
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+VA ++ +S+ F + + T A+ A +NG L+ + V FV ++ +
Sbjct: 168 CKVAADEFGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREV---FVGKHISKKDRESKF 224
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
EE + ++VKN+ EE + F +G I + + +D++GKSKGFGF+ F ++ +
Sbjct: 225 EEMKANFTNIYVKNIDLNYSEESFEKLFAPYGKITSIYLEKDQDGKSKGFGFVNFENHDS 284
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A KA+ E+N + I +V A+ + KK + + L + +FV NL
Sbjct: 285 AVKAVEELNDKEINGQKIYVGRAQKKRERLEELKKQYEAARLEKLAKYQGVNLFVKNLDD 344
Query: 239 NINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKP 293
I++ + EE F FGTITS+ ++ D K GF+ F P+ AT A++ MN + KP
Sbjct: 345 AIDSEKLEEEFKSFGTITSAKVMVDDAGKSKGFGFVCFTTPEEATKAITEMNTRMINGKP 404
Query: 294 LKVTLSGTK 302
L V L+ K
Sbjct: 405 LYVALAQRK 413
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 84/276 (30%), Positives = 131/276 (47%), Gaps = 25/276 (9%)
Query: 19 DEGARSNKENNKVYKEN-ELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRG 76
D+ A E++ V + + L+V L PSV+ L F G + +RV R+ + +S G
Sbjct: 34 DQSAEEQGESSGVAENSASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLG 93
Query: 77 FAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVK 136
+A + ++ + +KA E+N I +P I + + P R G +F+K
Sbjct: 94 YAYVNYHKYEDGEKAIEELNYTPIEGRPCRIMWSQRDPSARRSGDG---------NIFIK 144
Query: 137 NLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMI 196
NL +D + L F FG I+ K+ DE G+SK FGF+ + + +AAE AI +NG ++
Sbjct: 145 NLHPAIDNKALHDTFSAFGKILSCKVAADEFGQSKCFGFVHYETAEAAEAAIENVNGMLL 204
Query: 197 QHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKN--KIFVANLPSNINNSEFEELFARFGT 254
FV GK + K + + + N I+V N+ N + FE+LFA +G
Sbjct: 205 NDREVFV-------GKHISKKDRESKFEEMKANFTNIYVKNIDLNYSEESFEKLFAPYGK 257
Query: 255 ITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMN 285
ITS L D K GF+ F A AV +N
Sbjct: 258 ITSIYLEKDQDGKSKGFGFVNFENHDSAVKAVEELN 293
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 51/88 (57%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L V NL+ ++D++ L EFK FGT+ +V + +S+GF + F TP EA KA
Sbjct: 332 YQGVNLFVKNLDDAIDSEKLEEEFKSFGTITSAKVMVDDAGKSKGFGFVCFTTPEEATKA 391
Query: 92 RVEMNGHLIGSKPVIITFVELKPGQRSK 119
EMN +I KP+ + + K +RS+
Sbjct: 392 ITEMNTRMINGKPLYVALAQRKDVRRSQ 419
>gi|327299218|ref|XP_003234302.1| polyadenylate-binding protein [Trichophyton rubrum CBS 118892]
gi|326463196|gb|EGD88649.1| polyadenylate-binding protein [Trichophyton rubrum CBS 118892]
Length = 781
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 81/269 (30%), Positives = 131/269 (48%), Gaps = 25/269 (9%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+PSV L F G + +RV R+ S G+A + +N A+ ++A ++
Sbjct: 60 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 119
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI +P I + + P R G VF+KNL +D + L F FG
Sbjct: 120 NYTLIKGRPCRIMWSQRDPALRKTGQG---------NVFIKNLDTAIDNKALHDTFAAFG 170
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ +DE G SKG+GF+ + + +AA AI +NG ++ FV G +
Sbjct: 171 NILSCKVAQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFV-------GHHIA 223
Query: 216 PKVKPPLLQPARKN--KIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIG 267
K + + + N I+V N+ ++ + EF LF ++G ITS++L D + G
Sbjct: 224 KKDRQSKFEEMKANFTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFG 283
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
F+ F + A+ AV +N + K + L V
Sbjct: 284 FVNFSDHEAASAAVEALNEYELKGQKLYV 312
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 125/231 (54%), Gaps = 9/231 (3%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ ++DN+AL + F FG + +VA+++ S+G+ + + T A A +NG
Sbjct: 150 IKNLDTAIDNKALHDTFAAFGNILSCKVAQDEYGNSKGYGFVHYETAEAATNAIKHVNGM 209
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ K V + K ++SK EE + ++VKN+ + V +EE + F K+G I
Sbjct: 210 LLNEKKVFVGHHIAKKDRQSK---FEEMKANFTNIYVKNVEQDVTDEEFRGLFEKYGEIT 266
Query: 159 EVKIVRD-ENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGK--KVF 215
+ RD E GKS+GFGF+ F ++AA A+ +N ++ +V A+ + ++
Sbjct: 267 SATLSRDNETGKSRGFGFVNFSDHEAASAAVEALNEYELKGQKLYVGRAQKKHEREEELR 326
Query: 216 PKVKPPLLQPARKNK---IFVANLPSNINNSEFEELFARFGTITSSSLVSD 263
+ + ++ A K + +++ NL +I++ + ELF+ +G ITS+ ++ +
Sbjct: 327 KQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLRELFSSYGNITSAKVMRE 377
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 70/176 (39%), Gaps = 37/176 (21%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L++ NL +D++ L F +G + +V R + + PAE +K
Sbjct: 340 YQGVNLYIKNLSDDIDDEKLRELFSSYGNITSAKVMRE----------AIVDVPAETEKG 389
Query: 92 RVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHF 151
K E+ + DK K ++ E++ KS
Sbjct: 390 ---------------------------KEADKEKAKEAGDKSEEKGESKSESEDKSKSEE 422
Query: 152 IKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
G K + GKSKGFGF+ F + A KA+ EMN RM+ +V+LA+
Sbjct: 423 KSEGKTESAKPEKRHLGKSKGFGFVCFSNPDEASKAVTEMNQRMVHGKPLYVALAQ 478
Score = 38.5 bits (88), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 27/46 (58%)
Query: 74 SRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSK 119
S+GF + F+ P EA KA EMN ++ KP+ + + K ++S+
Sbjct: 441 SKGFGFVCFSNPDEASKAVTEMNQRMVHGKPLYVALAQRKDVRKSQ 486
>gi|148223119|ref|NP_001088471.1| uncharacterized protein LOC495336 [Xenopus laevis]
gi|54311231|gb|AAH84798.1| LOC495336 protein [Xenopus laevis]
Length = 711
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 80/275 (29%), Positives = 148/275 (53%), Gaps = 16/275 (5%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL +++ + L + F FG + ++A ++N S+G+ + F AK+A ++N
Sbjct: 94 IKNLAKTIEQKELYDTFSLFGRILSCKIAMDENGNSKGYGFVHFENEECAKRAIQKVNNM 153
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
I K V + + ++S + ++ K + ++VKN D+E+LK F +FG I
Sbjct: 154 SICGKVVYVGNFIPRSDRKS-----QNRKQKFNNIYVKNFPPETDDEKLKEMFTEFGEIK 208
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKV 218
+++D GKSKGFGF+ + + + AE A+ M+G+ I S + S A+ ++ K+
Sbjct: 209 SACVMKDSEGKSKGFGFVCYLNPEHAEAAVAAMHGKEIGGRSLYASRAQRKEERQEELKL 268
Query: 219 KPPLLQPARKNK------IFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIG 267
+ + R++K ++V NL I++ +E+F+++G I+S+ +++D K G
Sbjct: 269 RLEKQKAERRSKYVSNVNLYVKNLDDEIDDERLKEIFSKYGPISSAKVMTDSNNRSKGFG 328
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F+ F P+ AT AV+ NG V SKPL V ++ K
Sbjct: 329 FVCFTNPEQATKAVTEANGRVEYSKPLYVAIAQRK 363
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 77/273 (28%), Positives = 138/273 (50%), Gaps = 24/273 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L P +++ L +F + G + V R+ + +S G+ + F P +A++A +M
Sbjct: 4 LYVGDLHPDINDDQLRMKFSEIGPVAVAHVCRDVTSRKSLGYGYVNFEDPKDAERALEQM 63
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N ++ +P+ I + + P R +G +F+KNL +T++++EL F FG
Sbjct: 64 NYEVVMGRPIRIMWSQRDPSLRKSGLG---------NIFIKNLAKTIEQKELYDTFSLFG 114
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
I+ KI DENG SKG+GF+ F + + A++AI ++N I +V
Sbjct: 115 RILSCKIAMDENGNSKGYGFVHFENEECAKRAIQKVNNMSICGKVVYVG--------NFI 166
Query: 216 PKVKPPLLQPARK-NKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFI 269
P+ +K N I+V N P ++ + +E+F FG I S+ ++ D K GF+
Sbjct: 167 PRSDRKSQNRKQKFNNIYVKNFPPETDDEKLKEMFTEFGEIKSACVMKDSEGKSKGFGFV 226
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
++ P+HA AV+ M+G + L + + K
Sbjct: 227 CYLNPEHAEAAVAAMHGKEIGGRSLYASRAQRK 259
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 101/190 (53%), Gaps = 8/190 (4%)
Query: 26 KENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTP 85
K N+ K N ++V N P D++ L F +FG ++ V ++ +S+GF + + P
Sbjct: 172 KSQNRKQKFNNIYVKNFPPETDDEKLKEMFTEFGEIKSACVMKDSEGKSKGFGFVCYLNP 231
Query: 86 AEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDK--------VFVKN 137
A+ A M+G IG + + + + K ++ + EKQ + + ++VKN
Sbjct: 232 EHAEAAVAAMHGKEIGGRSLYASRAQRKEERQEELKLRLEKQKAERRSKYVSNVNLYVKN 291
Query: 138 LVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQ 197
L + +D+E LK F K+G I K++ D N +SKGFGF+ F + + A KA+ E NGR+
Sbjct: 292 LDDEIDDERLKEIFSKYGPISSAKVMTDSNNRSKGFGFVCFTNPEQATKAVTEANGRVEY 351
Query: 198 HNSTFVSLAE 207
+V++A+
Sbjct: 352 SKPLYVAIAQ 361
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 47/83 (56%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L+V NL+ +D++ L F K+G + +V + N+ S+GF + F P +A KA E N
Sbjct: 287 LYVKNLDDEIDDERLKEIFSKYGPISSAKVMTDSNNRSKGFGFVCFTNPEQATKAVTEAN 346
Query: 97 GHLIGSKPVIITFVELKPGQRSK 119
G + SKP+ + + K +R++
Sbjct: 347 GRVEYSKPLYVAIAQRKEDRRAE 369
>gi|440797930|gb|ELR19004.1| polyadenylate-binding protein family protein [Acanthamoeba
castellanii str. Neff]
Length = 462
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 80/275 (29%), Positives = 142/275 (51%), Gaps = 15/275 (5%)
Query: 34 ENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARV 93
+ + + NL+ S+DN+AL + F FG + +V + S+G+ + + T A A
Sbjct: 97 QGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVTDGKGNSKGYGFVHYETSEAADSAIA 156
Query: 94 EMNGHLIGSKPVII-TFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFI 152
++NG ++ K V + F+ K +R+ PE K +++KNL E EE+LK F
Sbjct: 157 KVNGKMLNGKIVYVGRFIARK--ERTPGSDPE----KFTNIYIKNLGEAYTEEDLKRDFG 210
Query: 153 KFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGK 212
FG + +++D + F F+ F ++AA +A E+NGR + +V A+ +
Sbjct: 211 AFGTVQSAVLMKDPRDIGRQFAFVNFEDHEAAHRATEELNGRKLGDKEVYVGRAQKKSER 270
Query: 213 KVF-PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFAR--FGTITSSSLVSD-----K 264
+ F K++ Q + +++ NL +N+ E +LF+ FG ITS ++SD +
Sbjct: 271 ESFLRKLREERAQKYQGINLYIKNLDDTVNDEELHKLFSALPFGQITSCKVMSDDKGNSR 330
Query: 265 HIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299
GF+ + P+ A+ AVS MNG + +KP+ V L+
Sbjct: 331 GFGFVCYTNPEDASKAVSEMNGKMVANKPIYVALA 365
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 78/274 (28%), Positives = 129/274 (47%), Gaps = 22/274 (8%)
Query: 29 NKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAE 87
N Y+ L+V +L P+V L FK G + +RV R+ S G+A + F+ +
Sbjct: 4 NSPYQSASLYVGDLNPTVTEALLFEIFKAVGPVASIRVCRDAVTRRSLGYAYVNFHNVVD 63
Query: 88 AKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEEL 147
A++A +N LI +P I + P R G +F+KNL +++D + L
Sbjct: 64 AERALDTLNYTLIKGRPCRIMWSHRDPSIRKSGQG---------NIFIKNLDKSIDNKAL 114
Query: 148 KSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
F FGNI+ K+V D G SKG+GF+ + + +AA+ AI ++NG+M+ +V
Sbjct: 115 YDTFSAFGNILSCKVVTDGKGNSKGYGFVHYETSEAADSAIAKVNGKMLNGKIVYV---- 170
Query: 208 IVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD---- 263
G+ + K + P P + I++ NL + + F FGT+ S+ L+ D
Sbjct: 171 ---GRFIARKERTPGSDPEKFTNIYIKNLGEAYTEEDLKRDFGAFGTVQSAVLMKDPRDI 227
Query: 264 -KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
+ F+ F + A A +NG K + V
Sbjct: 228 GRQFAFVNFEDHEAAHRATEELNGRKLGDKEVYV 261
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 99/176 (56%), Gaps = 5/176 (2%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+++ NL + + L +F FGT++ + ++ D R FA + F A +A E+N
Sbjct: 191 IYIKNLGEAYTEEDLKRDFGAFGTVQSAVLMKDPRDIGRQFAFVNFEDHEAAHRATEELN 250
Query: 97 GHLIGSKPVIITFVELKPGQRS--KPVGPEEKQ-YKKDKVFVKNLVETVDEEELKSHF-- 151
G +G K V + + K + S + + E Q Y+ +++KNL +TV++EEL F
Sbjct: 251 GRKLGDKEVYVGRAQKKSERESFLRKLREERAQKYQGINLYIKNLDDTVNDEELHKLFSA 310
Query: 152 IKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
+ FG I K++ D+ G S+GFGF+ + + + A KA+ EMNG+M+ + +V+LAE
Sbjct: 311 LPFGQITSCKVMSDDKGNSRGFGFVCYTNPEDASKAVSEMNGKMVANKPIYVALAE 366
>gi|780291|gb|AAA65224.1| polyadenylate-binding protein [Caenorhabditis elegans]
Length = 646
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 84/281 (29%), Positives = 134/281 (47%), Gaps = 35/281 (12%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVAR-NKNDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V+ L +F G + +RV R N S G+A + F PA+A++
Sbjct: 29 YTMASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAER 88
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN + KP+ I + + P R G +F+KNL + +D + +
Sbjct: 89 AMDTMNFEALHGKPMRIMWSQRDPAMRRSGAG---------NIFIKNLDKVIDNKSIYDT 139
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVP 210
F FGNI+ K+ DE+G SKG+GF+ F + +AA+ AI ++NG ++
Sbjct: 140 FSLFGNILSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQKVNGMLL-------------A 186
Query: 211 GKKVFPKVKPPLLQPARK--------NKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
GKKVF P Q R+ ++V N + N E++FA+FG ITS +++
Sbjct: 187 GKKVFVGKFQPRAQRNRELGETAKQFTNVYVKNFGDHYNKETLEKVFAKFGNITSCEVMT 246
Query: 263 ----DKHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299
K GF+ F P+ A AV ++ + LK+ +
Sbjct: 247 VEGKSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHVC 287
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 88/315 (27%), Positives = 156/315 (49%), Gaps = 46/315 (14%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ +DN+++ + F FG + +VA +++ S+G+ + F T A+ A ++N
Sbjct: 122 IFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQKVN 181
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G L+ K V + + + QR++ +G KQ+ V+VKN + ++E L+ F KFGN
Sbjct: 182 GMLLAGKKVFVGKFQPR-AQRNRELGETAKQFTN--VYVKNFGDHYNKETLEKVFAKFGN 238
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----------A 206
I +++ E GKSKGFGF+ F + + AE A+ ++ I+ + + A
Sbjct: 239 ITSCEVMTVE-GKSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHVCRAQKKSERHA 297
Query: 207 EIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD--- 263
E+ KK + K +Q + ++V NL +++ ++ F +G ITS+ +++D
Sbjct: 298 EL---KKKHEQHKAERMQKYQGVNLYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENG 354
Query: 264 --KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLS---------------------- 299
K GF+ F P+ AT AV+ MN + SKPL V +
Sbjct: 355 RSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYVAIGQRKEDRRAQLASQYMQRVASMR 414
Query: 300 --GTKPGVSITNPTK 312
G PG ++ NPT+
Sbjct: 415 MHGNVPGAAMYNPTQ 429
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 100/196 (51%), Gaps = 11/196 (5%)
Query: 22 ARSNKENNKVYKE-NELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAII 80
A+ N+E + K+ ++V N + + L F KFG + V +S+GF +
Sbjct: 199 AQRNRELGETAKQFTNVYVKNFGDHYNKETLEKVFAKFGNITSCEVM-TVEGKSKGFGFV 257
Query: 81 VFNTPAEAKKARVEMNGHLI-GSKPVIITFVELKPGQRSKPVGPEEKQYKKDK------- 132
F P EA+ A ++ I G+ + K +R + + +Q+K ++
Sbjct: 258 AFANPEEAETAVQALHDSTIEGTDLKLHVCRAQKKSERHAELKKKHEQHKAERMQKYQGV 317
Query: 133 -VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEM 191
++VKNL ETVD++ LK F +GNI K++ DENG+SKGFGF+ F + A A+ EM
Sbjct: 318 NLYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEATSAVTEM 377
Query: 192 NGRMIQHNSTFVSLAE 207
N +M+ +V++ +
Sbjct: 378 NSKMVCSKPLYVAIGQ 393
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 52/93 (55%)
Query: 27 ENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPA 86
E + Y+ L+V NL+ +VD+ L +F+ +G + +V ++N S+GF + F P
Sbjct: 309 ERMQKYQGVNLYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPE 368
Query: 87 EAKKARVEMNGHLIGSKPVIITFVELKPGQRSK 119
EA A EMN ++ SKP+ + + K +R++
Sbjct: 369 EATSAVTEMNSKMVCSKPLYVAIGQRKEDRRAQ 401
>gi|393216848|gb|EJD02338.1| polyadenylate binding protein [Fomitiporia mediterranea MF3/22]
Length = 701
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 80/275 (29%), Positives = 143/275 (52%), Gaps = 15/275 (5%)
Query: 34 ENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARV 93
+ + + NL+ +D++AL + F FG + +VA ++N SRGF + ++T A A
Sbjct: 143 QGNIFIKNLDEQIDHKALHDTFAAFGNVLSCKVATDENGRSRGFGFVHYDTAEAADTAIK 202
Query: 94 EMNGHLIGSKPVIIT-FVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFI 152
+NG L+ K V + ++ K +R + ++ Q+ ++VKNL V ++E F
Sbjct: 203 AVNGMLLNDKKVFVGHYISKK--ERQAHIDEQKSQFT--NLYVKNLDTEVTDDEFNDMFA 258
Query: 153 KFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPG- 211
KFG + + +DE GKSKGFGF+ F +++A+ A+ ++ + FV+ A+
Sbjct: 259 KFGEVTSAVVQKDEEGKSKGFGFVNFKDHESAQAAVDALHDTELNGKKLFVTRAQKKAER 318
Query: 212 ----KKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD---- 263
+K + + K L + +++ NL ++++ + F FGTITS ++ D
Sbjct: 319 EEELRKSYEQAKMEKLSKYQGANLYIKNLEDDMDDDKLRAEFEPFGTITSCKIMRDEKGT 378
Query: 264 -KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVT 297
K GF+ + P+ AT AV+ MN + SKPL V+
Sbjct: 379 SKGFGFVCYSSPEEATKAVAEMNNKMLGSKPLYVS 413
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 77/269 (28%), Positives = 132/269 (49%), Gaps = 24/269 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+ +V L F G + +RV R+ S G+A + + A+ ++A ++
Sbjct: 58 LYVGELDSTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEQL 117
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI ++ I + + P R G +F+KNL E +D + L F FG
Sbjct: 118 NYSLIKNRACRIMWSQRDPALRKTGQG---------NIFIKNLDEQIDHKALHDTFAAFG 168
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
N++ K+ DENG+S+GFGF+ + + +AA+ AI +NG ++ FV G +
Sbjct: 169 NVLSCKVATDENGRSRGFGFVHYDTAEAADTAIKAVNGMLLNDKKVFV-------GHYIS 221
Query: 216 PKVKPPLL--QPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGF 268
K + + Q ++ ++V NL + + + EF ++FA+FG +TS+ + D K GF
Sbjct: 222 KKERQAHIDEQKSQFTNLYVKNLDTEVTDDEFNDMFAKFGEVTSAVVQKDEEGKSKGFGF 281
Query: 269 IEFIMPKHATHAVSTMNGHVFKSKPLKVT 297
+ F + A AV ++ K L VT
Sbjct: 282 VNFKDHESAQAAVDALHDTELNGKKLFVT 310
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 97/179 (54%), Gaps = 9/179 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L+V NL+ V + + F KFG + V +++ +S+GF + F A+ A ++
Sbjct: 239 LYVKNLDTEVTDDEFNDMFAKFGEVTSAVVQKDEEGKSKGFGFVNFKDHESAQAAVDALH 298
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKV--------FVKNLVETVDEEELK 148
+ K + +T + K +R + + +Q K +K+ ++KNL + +D+++L+
Sbjct: 299 DTELNGKKLFVTRAQKK-AEREEELRKSYEQAKMEKLSKYQGANLYIKNLEDDMDDDKLR 357
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
+ F FG I KI+RDE G SKGFGF+ + S + A KA+ EMN +M+ +VS A+
Sbjct: 358 AEFEPFGTITSCKIMRDEKGTSKGFGFVCYSSPEEATKAVAEMNNKMLGSKPLYVSPAQ 416
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 52/86 (60%), Gaps = 5/86 (5%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L++ NLE +D+ L EF+ FGT+ ++ R++ S+GF + +++P EA KA
Sbjct: 337 YQGANLYIKNLEDDMDDDKLRAEFEPFGTITSCKIMRDEKGTSKGFGFVCYSSPEEATKA 396
Query: 92 RVEMNGHLIGSKPVIITFVELKPGQR 117
EMN ++GSKP+ ++ P QR
Sbjct: 397 VAEMNNKMLGSKPLYVS-----PAQR 417
>gi|158563873|sp|Q5B630.2|PABP_EMENI RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|259481418|tpe|CBF74916.1| TPA: Polyadenylate-binding protein, cytoplasmic and nuclear
(Poly(A)-binding protein)(PABP)(Polyadenylate
tail-binding protein)
[Source:UniProtKB/Swiss-Prot;Acc:Q5B630] [Aspergillus
nidulans FGSC A4]
Length = 732
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 84/268 (31%), Positives = 129/268 (48%), Gaps = 24/268 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+PSV L F G + +RV R+ S G+A + +N A ++A E+
Sbjct: 44 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGERALDEL 103
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI KP I + + P R G VF+KNL +D + L F FG
Sbjct: 104 NYTLIKGKPCRIMWSQRDPALRKTGQG---------NVFIKNLDSAIDNKALHDTFAAFG 154
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ +DE G SKG+GF+ + + +AA AI +NG ++ FV G +
Sbjct: 155 NILSCKVAQDEFGVSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFV-------GHHIS 207
Query: 216 PKVKPPLLQPARKN--KIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGF 268
K + + + N I++ N+ + + EF +LF +FG ITS++L D + GF
Sbjct: 208 KKDRQSKFEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKSRGFGF 267
Query: 269 IEFIMPKHATHAVSTMNGHVFKSKPLKV 296
+ F + A AV MN +S+ L V
Sbjct: 268 VNFSTHESAQAAVEEMNDKEVRSQKLYV 295
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 74/265 (27%), Positives = 138/265 (52%), Gaps = 18/265 (6%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK W + D R + N + + NL+ ++DN+AL + F FG +
Sbjct: 109 KGKPCRIMWSQ---RDPALRKTGQGN-------VFIKNLDSAIDNKALHDTFAAFGNILS 158
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+VA+++ S+G+ + + T A A +NG L+ K V + K ++SK
Sbjct: 159 CKVAQDEFGVSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKF--- 215
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
EE + +++KN+ V++EE + F KFG I + RD GKS+GFGF+ F ++++
Sbjct: 216 EEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKSRGFGFVNFSTHES 275
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAEIVPGK--KVFPKVKPPLLQPARKNK---IFVANLPS 238
A+ A+ EMN + ++ +V A+ + ++ + + ++ A K + ++V NL
Sbjct: 276 AQAAVEEMNDKEVRSQKLYVGRAQKKHEREEELRKQYEAARMEKASKYQGVNLYVKNLTD 335
Query: 239 NINNSEFEELFARFGTITSSSLVSD 263
++++ + ELF +GTITS+ ++ D
Sbjct: 336 DVDDDKLRELFGPYGTITSAKVMRD 360
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 61/233 (26%), Positives = 104/233 (44%), Gaps = 66/233 (28%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+++ N++P V+++ F+KFG + ++R+ +SRGF + F+T A+ A EMN
Sbjct: 225 IYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKSRGFGFVNFSTHESAQAAVEEMN 284
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDK-----------VFVKNLVETVDEE 145
+ S+ + + + K +R + + KQY+ + ++VKNL + VD++
Sbjct: 285 DKEVRSQKLYVGRAQKK-HEREEEL---RKQYEAARMEKASKYQGVNLYVKNLTDDVDDD 340
Query: 146 ELKSHFIKFGNIIEVKIVRD-------------------EN------------------- 167
+L+ F +G I K++RD EN
Sbjct: 341 KLRELFGPYGTITSAKVMRDTAPVETATPESETKESANKENEKAAEGEKEPAAEEKEKEE 400
Query: 168 -------------GKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
GKSKGFGF+ F S A KA+ EMN RM+ +V+LA+
Sbjct: 401 KKEAEQKPEKKPLGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQ 453
Score = 42.0 bits (97), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 56/151 (37%), Gaps = 53/151 (35%)
Query: 20 EGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVAR----------- 68
E AR K + Y+ L+V NL VD+ L F +GT+ +V R
Sbjct: 313 EAARMEKASK--YQGVNLYVKNLTDDVDDDKLRELFGPYGTITSAKVMRDTAPVETATPE 370
Query: 69 -------NKNDE---------------------------------SRGFAIIVFNTPAEA 88
NK +E S+GF + F++P EA
Sbjct: 371 SETKESANKENEKAAEGEKEPAAEEKEKEEKKEAEQKPEKKPLGKSKGFGFVCFSSPDEA 430
Query: 89 KKARVEMNGHLIGSKPVIITFVELKPGQRSK 119
KA EMN ++ KP+ + + K +RS+
Sbjct: 431 SKAVTEMNQRMVNGKPLYVALAQRKDVRRSQ 461
>gi|384486188|gb|EIE78368.1| hypothetical protein RO3G_03072 [Rhizopus delemar RA 99-880]
Length = 499
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 85/298 (28%), Positives = 143/298 (47%), Gaps = 24/298 (8%)
Query: 13 DEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-N 71
D+ + +G+ ++ + L+V L+PSV L F G + +RV R+
Sbjct: 6 DKATVETQGSSTSAPESAPLASASLYVGELDPSVTEAMLFEMFNIIGPVSSIRVCRDAVT 65
Query: 72 DESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKD 131
S G+A + F+ A+A++A +N +I + I + + P R G
Sbjct: 66 RRSLGYAYVNFHRMADAERALETLNYSMIKGRSCRIMWSQRDPSLRKGNNG--------- 116
Query: 132 KVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEM 191
+F+KNL ++D + L F FGNI+ KI DE G SKG+GF+ + + +AAE AI +
Sbjct: 117 NIFIKNLDPSIDHKALHDTFSAFGNILSCKIAHDEQGNSKGYGFVHYETLEAAESAIKSV 176
Query: 192 NGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARK--NKIFVANLPSNINNSEFEELF 249
NG ++ FV G + K + L +R I+V N+P ++ + E +LF
Sbjct: 177 NGMLLNDRKVFV-------GHHISRKERESKLGESRVQFTNIYVKNIPFDVTDEELSQLF 229
Query: 250 ARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
++GTITS + D K GF+ F + A +AV ++ F+ + L V+ + K
Sbjct: 230 GKYGTITSCVITRDDDGTSKGFGFVNFEKHQDAQNAVDDLHKKDFRGQDLYVSRAQKK 287
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 82/310 (26%), Positives = 154/310 (49%), Gaps = 24/310 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KG+ W + D R N + + NL+PS+D++AL + F FG +
Sbjct: 95 KGRSCRIMWSQ---RDPSLRKGNNGN-------IFIKNLDPSIDHKALHDTFSAFGNILS 144
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
++A ++ S+G+ + + T A+ A +NG L+ + V + + +R +G
Sbjct: 145 CKIAHDEQGNSKGYGFVHYETLEAAESAIKSVNGMLLNDRKVFVGH-HISRKERESKLGE 203
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
Q+ ++VKN+ V +EEL F K+G I I RD++G SKGFGF+ F ++
Sbjct: 204 SRVQFTN--IYVKNIPFDVTDEELSQLFGKYGTITSCVITRDDDGTSKGFGFVNFEKHQD 261
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAEI-----VPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A+ A+ +++ + + +VS A+ ++ + + K + + ++V NL
Sbjct: 262 AQNAVDDLHKKDFRGQDLYVSRAQKKNEREEELRRQYEEAKLEKMSKYQGVNLYVKNLDD 321
Query: 239 NINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSK 292
++++ + F+ +G ITS+ ++ D + GF+ F P+ AT AV+ MNG + SK
Sbjct: 322 DMDDDRLRDEFSVYGVITSAKIMRDEKTNISRGFGFVCFTSPEDATRAVTEMNGRIIGSK 381
Query: 293 PLKVTLSGTK 302
P+ V ++ K
Sbjct: 382 PIYVAIAQRK 391
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 115/213 (53%), Gaps = 15/213 (7%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
++V N+ V ++ L F K+GT+ + R+ + S+GF + F +A+ A +++
Sbjct: 211 IYVKNIPFDVTDEELSQLFGKYGTITSCVITRDDDGTSKGFGFVNFEKHQDAQNAVDDLH 270
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDK--------VFVKNLVETVDEEELK 148
+ + ++ + K +R + + + ++ K +K ++VKNL + +D++ L+
Sbjct: 271 KKDFRGQDLYVSRAQ-KKNEREEELRRQYEEAKLEKMSKYQGVNLYVKNLDDDMDDDRLR 329
Query: 149 SHFIKFGNIIEVKIVRDENGK-SKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
F +G I KI+RDE S+GFGF+ F S + A +A+ EMNGR+I +V++A+
Sbjct: 330 DEFSVYGVITSAKIMRDEKTNISRGFGFVCFTSPEDATRAVTEMNGRIIGSKPIYVAIAQ 389
Query: 208 IVPGKKVFPKVKPPLLQPARKNKIFVANLPSNI 240
K+V + +Q A++N++ A +P ++
Sbjct: 390 ---RKEV--RRSQLEIQMAQRNQLKQAMMPPSV 417
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 54/89 (60%), Gaps = 1/89 (1%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKK 90
Y+ L+V NL+ +D+ L +EF +G + ++ R+ K + SRGF + F +P +A +
Sbjct: 309 YQGVNLYVKNLDDDMDDDRLRDEFSVYGVITSAKIMRDEKTNISRGFGFVCFTSPEDATR 368
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSK 119
A EMNG +IGSKP+ + + K +RS+
Sbjct: 369 AVTEMNGRIIGSKPIYVAIAQRKEVRRSQ 397
>gi|344304706|gb|EGW34938.1| hypothetical protein SPAPADRAFT_58066 [Spathaspora passalidarum
NRRL Y-27907]
Length = 508
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 85/276 (30%), Positives = 146/276 (52%), Gaps = 13/276 (4%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL P++DN+AL + F FG + +VA + +S+ F + + T A+ A +N
Sbjct: 17 IFIKNLHPAIDNKALHDTFSAFGKILSCKVATDDMGQSKCFGFVHYETAEAAEAAIENVN 76
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G L+ + V + K + SK EE + ++VKN+ +EE + F+ FG
Sbjct: 77 GMLLNDREVYVGKHISKKDRESK---FEEMKANYTNIYVKNIDLEFSDEEFEKLFVPFGT 133
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPG 211
I + + +D++GKSKGFGF+ + ++++A KA+ E+N + I +V A+ +
Sbjct: 134 ITSIYLEKDQDGKSKGFGFVNYETHESAVKAVEELNDKEINGQKIYVGRAQKKRERMEEL 193
Query: 212 KKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHI 266
KK + + L + +FV NL +I++ + EE F FG+ITS+ ++ D K
Sbjct: 194 KKQYESTRVERLSKYQGVNLFVKNLDDSIDSEKLEEEFKPFGSITSAKVMVDEAGKSKGF 253
Query: 267 GFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ F P+ AT A++ MN + KPL V L+ K
Sbjct: 254 GFVCFSSPEEATKAITEMNQRMILGKPLYVALAQRK 289
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 85/170 (50%), Gaps = 14/170 (8%)
Query: 123 PEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYK 182
P ++ +F+KNL +D + L F FG I+ K+ D+ G+SK FGF+ + + +
Sbjct: 7 PSSRRSGDGNIFIKNLHPAIDNKALHDTFSAFGKILSCKVATDDMGQSKCFGFVHYETAE 66
Query: 183 AAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKN--KIFVANLPSNI 240
AAE AI +NG ++ +V GK + K + + + N I+V N+
Sbjct: 67 AAEAAIENVNGMLLNDREVYV-------GKHISKKDRESKFEEMKANYTNIYVKNIDLEF 119
Query: 241 NNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMN 285
++ EFE+LF FGTITS L D K GF+ + + A AV +N
Sbjct: 120 SDEEFEKLFVPFGTITSIYLEKDQDGKSKGFGFVNYETHESAVKAVEELN 169
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 53/88 (60%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L V NL+ S+D++ L EFK FG++ +V ++ +S+GF + F++P EA KA
Sbjct: 208 YQGVNLFVKNLDDSIDSEKLEEEFKPFGSITSAKVMVDEAGKSKGFGFVCFSSPEEATKA 267
Query: 92 RVEMNGHLIGSKPVIITFVELKPGQRSK 119
EMN +I KP+ + + K +RS+
Sbjct: 268 ITEMNQRMILGKPLYVALAQRKDVRRSQ 295
>gi|326511990|dbj|BAJ95976.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 530
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 81/276 (29%), Positives = 136/276 (49%), Gaps = 15/276 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ ++DN+ L + F FG + +VA + +S+GF + + A+ A +N
Sbjct: 212 IFIKNLDKTIDNKTLHDTFSAFGAILSCKVAMDDIGQSKGFGFVQYEKEESAQSAMKSLN 271
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G LI KPV + P R + + K + VFVKNL E+ +E+L F ++G
Sbjct: 272 GMLINDKPVYVG-----PFLRKQERDNSSDKAKFNNVFVKNLSESTTKEDLIKVFSEYGT 326
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEI-----VPG 211
I ++ +GKS+ FGF+ F S A +A+ E+NG+ I +V A+ +
Sbjct: 327 ITSAVVMIGMDGKSRCFGFVNFESPDDAARAVEELNGKKINDKEWYVGRAQKKSEREMDL 386
Query: 212 KKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHI 266
K+ F + + +++ NL I + + ELF+ FG ITS ++ D K
Sbjct: 387 KRRFEQSMKDAADKYQGQNLYLKNLDDGITDDQLRELFSNFGKITSCKIMRDQNGVSKGS 446
Query: 267 GFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ F + A+ A++ MNG + KPL V + K
Sbjct: 447 GFVSFSTREEASQALTEMNGKMISGKPLYVAFAQRK 482
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 73/256 (28%), Positives = 128/256 (50%), Gaps = 22/256 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDE-SRGFAIIVFNTPAEAKKARVEM 95
L+V +LE +V + L F + G + VRV R+ N S G+A + ++ P +A +A +
Sbjct: 124 LYVGDLEANVTDSQLYELFSQAGQVVSVRVCRDVNSRRSLGYAYVNYSNPMDAARAMEAL 183
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N + +KP+ + + P R + +F+KNL +T+D + L F FG
Sbjct: 184 NFAPLNNKPIRVMYSNRDPSSR---------RSGSANIFIKNLDKTIDNKTLHDTFSAFG 234
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
I+ K+ D+ G+SKGFGF+Q+ ++A+ A+ +NG +I +V G +
Sbjct: 235 AILSCKVAMDDIGQSKGFGFVQYEKEESAQSAMKSLNGMLINDKPVYV-------GPFLR 287
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLV-----SDKHIGFIE 270
+ + A+ N +FV NL + + ++F+ +GTITS+ ++ + GF+
Sbjct: 288 KQERDNSSDKAKFNNVFVKNLSESTTKEDLIKVFSEYGTITSAVVMIGMDGKSRCFGFVN 347
Query: 271 FIMPKHATHAVSTMNG 286
F P A AV +NG
Sbjct: 348 FESPDDAARAVEELNG 363
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 105/206 (50%), Gaps = 12/206 (5%)
Query: 33 KENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKAR 92
K N + V NL S + LI F ++GT+ V + +SR F + F +P +A +A
Sbjct: 299 KFNNVFVKNLSESTTKEDLIKVFSEYGTITSAVVMIGMDGKSRCFGFVNFESPDDAARAV 358
Query: 93 VEMNGHLIGSKPVIITFVELKPGQR-------SKPVGPEEKQYKKDKVFVKNLVETVDEE 145
E+NG I K + + K + + + +Y+ +++KNL + + ++
Sbjct: 359 EELNGKKINDKEWYVGRAQKKSEREMDLKRRFEQSMKDAADKYQGQNLYLKNLDDGITDD 418
Query: 146 ELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL 205
+L+ F FG I KI+RD+NG SKG GF+ F + + A +A+ EMNG+MI +V+
Sbjct: 419 QLRELFSNFGKITSCKIMRDQNGVSKGSGFVSFSTREEASQALTEMNGKMISGKPLYVAF 478
Query: 206 AEIVPGKKV-----FPKVKPPLLQPA 226
A+ +K F +++P + P+
Sbjct: 479 AQRKEERKAMLQAQFSQMRPVPMTPS 504
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 49/91 (53%)
Query: 23 RSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVF 82
+S K+ Y+ L++ NL+ + + L F FG + ++ R++N S+G + F
Sbjct: 392 QSMKDAADKYQGQNLYLKNLDDGITDDQLRELFSNFGKITSCKIMRDQNGVSKGSGFVSF 451
Query: 83 NTPAEAKKARVEMNGHLIGSKPVIITFVELK 113
+T EA +A EMNG +I KP+ + F + K
Sbjct: 452 STREEASQALTEMNGKMISGKPLYVAFAQRK 482
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
Query: 224 QPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIG--FIEFIMPKHA 277
QP ++V +L +N+ +S+ ELF++ G + S + D + +G ++ + P A
Sbjct: 117 QPLPTTSLYVGDLEANVTDSQLYELFSQAGQVVSVRVCRDVNSRRSLGYAYVNYSNPMDA 176
Query: 278 THAVSTMNGHVFKSKPLKVTLSGTKP 303
A+ +N +KP++V S P
Sbjct: 177 ARAMEALNFAPLNNKPIRVMYSNRDP 202
>gi|395856757|ref|XP_003800785.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Otolemur garnettii]
Length = 359
Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 76/235 (32%), Positives = 129/235 (54%), Gaps = 12/235 (5%)
Query: 74 SRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKV 133
S+G+A + F + A +A EMNG + V FV ++ + K + V
Sbjct: 107 SKGYAFVHFQNQSAADRAIEEMNGRQLKDCKV---FVGRFKNRKDREAELRNKAGEFTNV 163
Query: 134 FVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNG 193
++KN E +D+E+LK F K+G + VK++ D +GKSKGFGF+ F +++AA+KA+ EMNG
Sbjct: 164 YIKNFGEDMDDEKLKEVFSKYGRTLSVKVMTDSSGKSKGFGFVSFDNHEAAKKAVKEMNG 223
Query: 194 RMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEEL 248
+ I FV A+ K++F ++K + + K+++ NL I++ + +
Sbjct: 224 KDINGQLIFVGRAQKKVERQAELKQMFEQLKKERIHGCQGVKLYIKNLDDTIDDEKLRKE 283
Query: 249 FARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299
F+ FG+I+ ++ + K G I F + AT A++ MNGH+ SKPL + L+
Sbjct: 284 FSSFGSISRVKVMQEGGQSKGFGLICFSSLEEATKAMTEMNGHILGSKPLSIALA 338
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 105/192 (54%), Gaps = 10/192 (5%)
Query: 23 RSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVF 82
R + NK + +++ N +D++ L F K+G V+V + + +S+GF + F
Sbjct: 149 REAELRNKAGEFTNVYIKNFGEDMDDEKLKEVFSKYGRTLSVKVMTDSSGKSKGFGFVSF 208
Query: 83 NTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKD--------KVF 134
+ AKKA EMNG I + + + + K +R + +Q KK+ K++
Sbjct: 209 DNHEAAKKAVKEMNGKDINGQLIFVGRAQ-KKVERQAELKQMFEQLKKERIHGCQGVKLY 267
Query: 135 VKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGR 194
+KNL +T+D+E+L+ F FG+I VK+++ E G+SKGFG I F S + A KA+ EMNG
Sbjct: 268 IKNLDDTIDDEKLRKEFSSFGSISRVKVMQ-EGGQSKGFGLICFSSLEEATKAMTEMNGH 326
Query: 195 MIQHNSTFVSLA 206
++ ++LA
Sbjct: 327 ILGSKPLSIALA 338
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/263 (22%), Positives = 110/263 (41%), Gaps = 54/263 (20%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y+ L+V +L V L +F G + +R+ R+ S G+A + F A+A+K
Sbjct: 7 YRMASLYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLQLADAQK 66
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN ++ K + + + + R +G
Sbjct: 67 ALDTMNFDVVNGKSIRLMWSQRDAYLRRSGIGN--------------------------- 99
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVP 210
++ D+ G SKG+ F+ F + AA++AI EMNGR ++ FV
Sbjct: 100 -----------VMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGRQLKDCKVFV------- 140
Query: 211 GKKVFPKVKPPLLQ--PARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----- 263
G+ K + L+ +++ N ++++ + +E+F+++G S +++D
Sbjct: 141 GRFKNRKDREAELRNKAGEFTNVYIKNFGEDMDDEKLKEVFSKYGRTLSVKVMTDSSGKS 200
Query: 264 KHIGFIEFIMPKHATHAVSTMNG 286
K GF+ F + A AV MNG
Sbjct: 201 KGFGFVSFDNHEAAKKAVKEMNG 223
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 57/93 (61%), Gaps = 1/93 (1%)
Query: 36 ELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEM 95
+L++ NL+ ++D++ L EF FG++ V+V + + +S+GF +I F++ EA KA EM
Sbjct: 265 KLYIKNLDDTIDDEKLRKEFSSFGSISRVKVMQ-EGGQSKGFGLICFSSLEEATKAMTEM 323
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQY 128
NGH++GSKP+ I +R + + QY
Sbjct: 324 NGHILGSKPLSIALAHRHYXERKIYLTRQYLQY 356
>gi|225428865|ref|XP_002285190.1| PREDICTED: polyadenylate-binding protein 2 [Vitis vinifera]
gi|147839912|emb|CAN65906.1| hypothetical protein VITISV_004873 [Vitis vinifera]
Length = 648
Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 86/277 (31%), Positives = 147/277 (53%), Gaps = 17/277 (6%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ +D++AL + F FG + +VA + + S+G + F++ A+KA ++N
Sbjct: 120 IFIKNLDKGIDHKALHDTFSAFGNILSCKVATDASGMSKGHGFVQFDSEEAAQKAIDKLN 179
Query: 97 GHLIGSKPVIIT-FVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
G L+ K V + FV + +R + E K + VFVKN+ E + EE+L F +FG
Sbjct: 180 GMLLNDKQVFVGPFVRKQ--ERESTINKE----KFNNVFVKNISEGMTEEDLTRIFGEFG 233
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEI-----VP 210
I V ++RD +GKSK FGF+ F + A ++ +NG+ +V A+ +
Sbjct: 234 PITSVVVMRDGDGKSKCFGFVNFENVDDAAMSVEALNGQKFDDKEWYVGKAQKKSEREIE 293
Query: 211 GKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KH 265
K F + + + +++ NL +I + + +ELFA+FGTITS ++ D +
Sbjct: 294 LKSRFEQNMKEAVDKFQGANLYIKNLDDSIGDDKLKELFAQFGTITSCKVMRDPNGLSRG 353
Query: 266 IGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ F P+ A+ A++ MN + SKPL V L+ K
Sbjct: 354 SGFVAFSSPEEASRALAEMNSKMVVSKPLYVALAQRK 390
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 78/262 (29%), Positives = 126/262 (48%), Gaps = 22/262 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKKARVEM 95
L+V +LE +V++ L + F + G + VRV R+ S G+ + ++ P +A +A +
Sbjct: 32 LYVGDLELNVNDSQLYDLFSQMGAVVSVRVCRDLSTRRSLGYGYVNYSNPQDAARALDVL 91
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N + KP+ I + P R G +F+KNL + +D + L F FG
Sbjct: 92 NFTPLNGKPIRIMYSHRDPSIRKSGTG---------NIFIKNLDKGIDHKALHDTFSAFG 142
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ D +G SKG GF+QF S +AA+KAI ++NG ++ FV G V
Sbjct: 143 NILSCKVATDASGMSKGHGFVQFDSEEAAQKAIDKLNGMLLNDKQVFV-------GPFVR 195
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIE 270
+ + + + N +FV N+ + + +F FG ITS ++ D K GF+
Sbjct: 196 KQERESTINKEKFNNVFVKNISEGMTEEDLTRIFGEFGPITSVVVMRDGDGKSKCFGFVN 255
Query: 271 FIMPKHATHAVSTMNGHVFKSK 292
F A +V +NG F K
Sbjct: 256 FENVDDAAMSVEALNGQKFDDK 277
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 98/195 (50%), Gaps = 11/195 (5%)
Query: 23 RSNKENNKVYKE--NELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAII 80
R + + + KE N + V N+ + + L F +FG + V V R+ + +S+ F +
Sbjct: 195 RKQERESTINKEKFNNVFVKNISEGMTEEDLTRIFGEFGPITSVVVMRDGDGKSKCFGFV 254
Query: 81 VFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKV------- 133
F +A + +NG K + + K +R + +Q K+ V
Sbjct: 255 NFENVDDAAMSVEALNGQKFDDKEWYVGKAQ-KKSEREIELKSRFEQNMKEAVDKFQGAN 313
Query: 134 -FVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMN 192
++KNL +++ +++LK F +FG I K++RD NG S+G GF+ F S + A +A+ EMN
Sbjct: 314 LYIKNLDDSIGDDKLKELFAQFGTITSCKVMRDPNGLSRGSGFVAFSSPEEASRALAEMN 373
Query: 193 GRMIQHNSTFVSLAE 207
+M+ +V+LA+
Sbjct: 374 SKMVVSKPLYVALAQ 388
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSDKHI------GFIEFIMPKHATHAVSTM 284
++V +L N+N+S+ +LF++ G + S + D G++ + P+ A A+ +
Sbjct: 32 LYVGDLELNVNDSQLYDLFSQMGAVVSVRVCRDLSTRRSLGYGYVNYSNPQDAARALDVL 91
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N KP+++ S P +
Sbjct: 92 NFTPLNGKPIRIMYSHRDPSI 112
>gi|221121498|ref|XP_002156904.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Hydra
magnipapillata]
Length = 635
Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 89/277 (32%), Positives = 152/277 (54%), Gaps = 16/277 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ ++DN+ L + F FG + ++A + + SRG+ + + T A +A ++N
Sbjct: 101 IFIKNLDKNIDNKGLYDAFSAFGNILSCKIAVDSKNVSRGYGFVHYETKEAAHEAIAKVN 160
Query: 97 GHLIGSKPVII-TFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
G ++ K V + F+ + +R + +G + K++K VFVKN +++DEE+LK F K G
Sbjct: 161 GMMLNDKKVFVGEFMSKR--ERLEKLGDQAKKFKN--VFVKNFGDSLDEEKLKEMFGKHG 216
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
I +V E+GKSKGFGF+ F + +AAE A+ E+NG I+ V A+ + +
Sbjct: 217 EITSC-VVMAESGKSKGFGFVAFEAPEAAEAAVNELNGLEIEGRKLVVCRAQKKAERTME 275
Query: 216 PKVKPPLLQPARKNK-----IFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KH 265
K + + R N+ +++ NL +++ F+ +GTITS+ ++ D K
Sbjct: 276 LKSRFEAQKMERINRYQGVNLYIKNLEDGLDDERLRSEFSTYGTITSAKVMKDEKGISKG 335
Query: 266 IGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ F P AT AV+ MNG + +KPL V L+ K
Sbjct: 336 FGFVCFSSPDEATKAVTEMNGRILVTKPLYVALAQRK 372
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 84/277 (30%), Positives = 138/277 (49%), Gaps = 21/277 (7%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F + G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPIASLYVGDLNPDVTEAMLFEKFSQTGPVLSIRVCRDLVTRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN I +P I + + P R VG +F+KNL + +D + L
Sbjct: 68 AIDTMNYDPIKGRPCRIMWSQRDPTLRRSGVG---------NIFIKNLDKNIDNKGLYDA 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVP 210
F FGNI+ KI D S+G+GF+ + + +AA +AI ++NG M+ FV E +
Sbjct: 119 FSAFGNILSCKIAVDSKNVSRGYGFVHYETKEAAHEAIAKVNGMMLNDKKVFV--GEFMS 176
Query: 211 GKKVFPKVKPPLLQPARKNK-IFVANLPSNINNSEFEELFARFGTITSSSLVSD----KH 265
++ K L A+K K +FV N +++ + +E+F + G ITS ++++ K
Sbjct: 177 KRERLEK----LGDQAKKFKNVFVKNFGDSLDEEKLKEMFGKHGEITSCVVMAESGKSKG 232
Query: 266 IGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ F P+ A AV+ +NG + + L V + K
Sbjct: 233 FGFVAFEAPEAAEAAVNELNGLEIEGRKLVVCRAQKK 269
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 99/192 (51%), Gaps = 8/192 (4%)
Query: 23 RSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVF 82
R K ++ K + V N S+D + L F K G + V ++ +S+GF + F
Sbjct: 180 RLEKLGDQAKKFKNVFVKNFGDSLDEEKLKEMFGKHGEITSC-VVMAESGKSKGFGFVAF 238
Query: 83 NTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQ-------YKKDKVFV 135
P A+ A E+NG I + +++ + K + + E Q Y+ +++
Sbjct: 239 EAPEAAEAAVNELNGLEIEGRKLVVCRAQKKAERTMELKSRFEAQKMERINRYQGVNLYI 298
Query: 136 KNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRM 195
KNL + +D+E L+S F +G I K+++DE G SKGFGF+ F S A KA+ EMNGR+
Sbjct: 299 KNLEDGLDDERLRSEFSTYGTITSAKVMKDEKGISKGFGFVCFSSPDEATKAVTEMNGRI 358
Query: 196 IQHNSTFVSLAE 207
+ +V+LA+
Sbjct: 359 LVTKPLYVALAQ 370
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 55/88 (62%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L++ NLE +D++ L +EF +GT+ +V +++ S+GF + F++P EA KA
Sbjct: 291 YQGVNLYIKNLEDGLDDERLRSEFSTYGTITSAKVMKDEKGISKGFGFVCFSSPDEATKA 350
Query: 92 RVEMNGHLIGSKPVIITFVELKPGQRSK 119
EMNG ++ +KP+ + + K +R++
Sbjct: 351 VTEMNGRILVTKPLYVALAQRKEERRAQ 378
>gi|19114289|ref|NP_593377.1| mRNA export shuttling protein [Schizosaccharomyces pombe 972h-]
gi|3123239|sp|P31209.2|PABP_SCHPO RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|2104439|emb|CAB08762.1| mRNA export shuttling protein [Schizosaccharomyces pombe]
Length = 653
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 78/277 (28%), Positives = 145/277 (52%), Gaps = 19/277 (6%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+P++DN+AL + F FG + +VA ++ ++G+ + F++ A A +NG
Sbjct: 172 IKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVNGM 231
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ K V +V +R + E + V++KNL + E+E F +FG I
Sbjct: 232 LLNDKKV---YVGHHVSRRERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEIT 288
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLA--------EIVP 210
+ +V+D+N K +GFGF+ + +++ A+KA+ E+N + + +V A E+
Sbjct: 289 SLSLVKDQNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHEREEEL-- 346
Query: 211 GKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KH 265
+K + ++K + + +F+ NL +++ + F+ FGTITS+ +++D K
Sbjct: 347 -RKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGKSKG 405
Query: 266 IGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ + P+ A AV+ MN + KPL V L+ K
Sbjct: 406 FGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQRK 442
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 83/268 (30%), Positives = 129/268 (48%), Gaps = 24/268 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+PSV L F G + +RV R+ S G+A + F+ + +KA E+
Sbjct: 82 LYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDEL 141
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI +P I + + P R G VF+KNL +D + L F FG
Sbjct: 142 NYTLIKGRPCRIMWSQRDPSLRKMGTG---------NVFIKNLDPAIDNKALHDTFSAFG 192
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
I+ K+ DE G +KG+GF+ F S ++A AI +NG ++ +V G V
Sbjct: 193 KILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYV-------GHHVS 245
Query: 216 PKVKPPLLQPARKN--KIFVANLPSNINNSEFEELFARFGTITSSSLVSDKH-----IGF 268
+ + ++ + N +++ NL + I EF +LF +FG ITS SLV D++ GF
Sbjct: 246 RRERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGF 305
Query: 269 IEFIMPKHATHAVSTMNGHVFKSKPLKV 296
+ + + A AV +N +K K L V
Sbjct: 306 VNYANHECAQKAVDELNDKEYKGKKLYV 333
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 99/179 (55%), Gaps = 9/179 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+++ NL+ + Q + F +FG + + + +++ND+ RGF + + A+KA E+N
Sbjct: 263 VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELN 322
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDK--------VFVKNLVETVDEEELK 148
K + + + K +R + + +Q K +K +F+KNL + VD+E LK
Sbjct: 323 DKEYKGKKLYVGRAQ-KKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLK 381
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
+ F FG I KI+ DE GKSKGFGF+ + + + A KA+ EMN RM+ +V+LA+
Sbjct: 382 AEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQ 440
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 50/88 (56%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L + NL+ VD++ L EF FGT+ ++ ++ +S+GF + + TP EA KA
Sbjct: 361 YQGVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKA 420
Query: 92 RVEMNGHLIGSKPVIITFVELKPGQRSK 119
EMN ++ KP+ + + K +RS+
Sbjct: 421 VTEMNQRMLAGKPLYVALAQRKEVRRSQ 448
>gi|115390925|ref|XP_001212967.1| polyadenylate-binding protein [Aspergillus terreus NIH2624]
gi|121739603|sp|Q0CR95.1|PABP_ASPTN RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|114193891|gb|EAU35591.1| polyadenylate-binding protein [Aspergillus terreus NIH2624]
Length = 753
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 82/268 (30%), Positives = 128/268 (47%), Gaps = 24/268 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+PSV L F G + +RV R+ S G+A + +N A+ ++A ++
Sbjct: 50 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 109
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI KP I + + P R G VF+KNL +D + L F FG
Sbjct: 110 NYTLIKGKPCRIMWSQRDPALRKTGQG---------NVFIKNLDAAIDNKALHDTFAAFG 160
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ +DE G SKG+GF+ + + +AA AI +NG ++ FV G +
Sbjct: 161 NILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFV-------GHHIS 213
Query: 216 PKVKPPLLQPARKN--KIFVANLPSNINNSEFEELFARFGTITSSSLVSDKH-----IGF 268
K + + + N +++ NL I+ EF ++F +FG ITS++L D+ GF
Sbjct: 214 KKDRQSKFEEMKANFTNVYIKNLDQEISEEEFRQMFEKFGEITSATLSRDQEGKSRGFGF 273
Query: 269 IEFIMPKHATHAVSTMNGHVFKSKPLKV 296
+ + A AV MN K + L V
Sbjct: 274 VNYSTHDSAQAAVDEMNDKEVKGQKLYV 301
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 78/268 (29%), Positives = 141/268 (52%), Gaps = 18/268 (6%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK W + D R + N + + NL+ ++DN+AL + F FG +
Sbjct: 115 KGKPCRIMWSQ---RDPALRKTGQGN-------VFIKNLDAAIDNKALHDTFAAFGNILS 164
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+VA+++ S+G+ + + T A A +NG L+ K V + K ++SK
Sbjct: 165 CKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKF--- 221
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
EE + V++KNL + + EEE + F KFG I + RD+ GKS+GFGF+ + ++ +
Sbjct: 222 EEMKANFTNVYIKNLDQEISEEEFRQMFEKFGEITSATLSRDQEGKSRGFGFVNYSTHDS 281
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAEIVPGK--KVFPKVKPPLLQPARKNK---IFVANLPS 238
A+ A+ EMN + ++ +V A+ + ++ + + L+ A K + ++V NL
Sbjct: 282 AQAAVDEMNDKEVKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTD 341
Query: 239 NINNSEFEELFARFGTITSSSLVSDKHI 266
+I++ + E+FA +GTITS+ ++ D +I
Sbjct: 342 DIDDEKLREMFAPYGTITSAKVMRDTNI 369
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/233 (24%), Positives = 100/233 (42%), Gaps = 66/233 (28%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+++ NL+ + + F+KFG + ++R++ +SRGF + ++T A+ A EMN
Sbjct: 231 VYIKNLDQEISEEEFRQMFEKFGEITSATLSRDQEGKSRGFGFVNYSTHDSAQAAVDEMN 290
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKV-----------FVKNLVETVDEE 145
+ + + + + K +R + + KQY+ ++ +VKNL + +D+E
Sbjct: 291 DKEVKGQKLYVGRAQKKH-EREEEL---RKQYEAARLEKASKYQGVNLYVKNLTDDIDDE 346
Query: 146 ELKSHFIKFGNIIEVKIVRDEN-------------------------------------- 167
+L+ F +G I K++RD N
Sbjct: 347 KLREMFAPYGTITSAKVMRDTNIERTQTPDSDKEKKEESKEEKPEAAEKTEEAAKESGDD 406
Query: 168 -------------GKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
GKSKGFGF+ F S A KA+ EMN RMI +V+LA+
Sbjct: 407 QDKENKKSDKKVLGKSKGFGFVCFSSPDEASKAVTEMNQRMINGKPLYVALAQ 459
Score = 44.3 bits (103), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 56/151 (37%), Gaps = 53/151 (35%)
Query: 20 EGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDE------ 73
E AR K + Y+ L+V NL +D++ L F +GT+ +V R+ N E
Sbjct: 319 EAARLEKASK--YQGVNLYVKNLTDDIDDEKLREMFAPYGTITSAKVMRDTNIERTQTPD 376
Query: 74 ---------------------------------------------SRGFAIIVFNTPAEA 88
S+GF + F++P EA
Sbjct: 377 SDKEKKEESKEEKPEAAEKTEEAAKESGDDQDKENKKSDKKVLGKSKGFGFVCFSSPDEA 436
Query: 89 KKARVEMNGHLIGSKPVIITFVELKPGQRSK 119
KA EMN +I KP+ + + K +RS+
Sbjct: 437 SKAVTEMNQRMINGKPLYVALAQRKDVRRSQ 467
>gi|431922856|gb|ELK19640.1| Polyadenylate-binding protein 5 [Pteropus alecto]
Length = 373
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 85/285 (29%), Positives = 151/285 (52%), Gaps = 41/285 (14%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S+DN+AL F FG + +V + N S+G+A + F++ A A +A MN
Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMN 166
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G + ++ V E++ R+ VFVKN + +D+E+LK F ++G
Sbjct: 167 GVRLNNRQVYRA-AEVRTRDRATFT----------NVFVKNFGDDMDDEKLKDIFSEYGP 215
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF- 215
VK++RD +GKSKGFGF+++ +++AA+KA+++++G+ I +V A+ KK+
Sbjct: 216 TESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQ----KKIER 271
Query: 216 --------------PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLV 261
K +PP + +++ NL I++ + +E F+ FG+I+ + ++
Sbjct: 272 LAELRRRFERLRLKEKSRPPGVP------VYIKNLDETIDDEKLKEEFSSFGSISRAKVM 325
Query: 262 SD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
+ K G + + + AT AV MNG + SKPL VTL +
Sbjct: 326 VEVGQGKGFGVVCYSSFEEATKAVDEMNGRIMGSKPLHVTLGQAR 370
Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 74/264 (28%), Positives = 123/264 (46%), Gaps = 29/264 (10%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDES-RGFAIIVFNTPAEAKKARVEMNG 97
V +L+P V L +F+ G LR R+ R+ S G+ + F PA+A+ A MN
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 98 HLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNI 157
LI KP + + + R VG +F+KNL +++D L F FGNI
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVG---------NIFIKNLDKSIDNRALFYLFSAFGNI 132
Query: 158 IEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPK 217
+ K+V D+NG SKG+ ++ F S AA +AI MNG + + ++V+
Sbjct: 133 LSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNN-------------RQVYRA 178
Query: 218 VKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFI 272
+ A +FV N ++++ + +++F+ +G S ++ D K GF+ +
Sbjct: 179 AEVRTRDRATFTNVFVKNFGDDMDDEKLKDIFSEYGPTESVKVIRDASGKSKGFGFVRYE 238
Query: 273 MPKHATHAVSTMNGHVFKSKPLKV 296
+ A AV ++G K L V
Sbjct: 239 THEAAQKAVLDLHGKSIDGKVLYV 262
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 62/205 (30%), Positives = 109/205 (53%), Gaps = 21/205 (10%)
Query: 21 GARSNKENNKVYKENELH-----------VNNLEPSVDNQALINEFKKFGTLRDVRVARN 69
G R N N +VY+ E+ V N +D++ L + F ++G V+V R+
Sbjct: 167 GVRLN--NRQVYRAAEVRTRDRATFTNVFVKNFGDDMDDEKLKDIFSEYGPTESVKVIRD 224
Query: 70 KNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYK 129
+ +S+GF + + T A+KA ++++G I K + + + K + ++ E+
Sbjct: 225 ASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRL 284
Query: 130 KDK-------VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYK 182
K+K V++KNL ET+D+E+LK F FG+I K++ E G+ KGFG + + S++
Sbjct: 285 KEKSRPPGVPVYIKNLDETIDDEKLKEEFSSFGSISRAKVMV-EVGQGKGFGVVCYSSFE 343
Query: 183 AAEKAIIEMNGRMIQHNSTFVSLAE 207
A KA+ EMNGR++ V+L +
Sbjct: 344 EATKAVDEMNGRIMGSKPLHVTLGQ 368
>gi|164657987|ref|XP_001730119.1| hypothetical protein MGL_2501 [Malassezia globosa CBS 7966]
gi|159104014|gb|EDP42905.1| hypothetical protein MGL_2501 [Malassezia globosa CBS 7966]
Length = 664
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 87/309 (28%), Positives = 152/309 (49%), Gaps = 24/309 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
+G+ W + D G R + N + + NL+ ++DN+AL + F FG +
Sbjct: 147 RGRPCRIMWSQ---RDPGQRRAGQGN-------IFIKNLDEAIDNKALHDTFAAFGKILS 196
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+VA N++ S G+ + + + A+ A +NG L+ K V + K +++K
Sbjct: 197 CKVASNEHG-SLGYGFVHYESNDAAEAAIKHVNGMLLNDKKVYVGHHISKKDRQAKI--- 252
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
EE + V+VKNL V +EE + F K+G I I D+ GKS+GFGF+ F ++
Sbjct: 253 EEARAHYTNVYVKNLDPAVTQEEFEKLFEKYGKITSAAIATDQEGKSRGFGFVNFSEHEQ 312
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAEIVPG-----KKVFPKVKPPLLQPARKNKIFVANLPS 238
A KA+ E+N F+ A+ ++ + K L + +++ NLP
Sbjct: 313 AAKAVEELNDTEFHGQKLFLGRAQKKSEREEELRRAYEAAKNEKLSKYQGVNLYIKNLPE 372
Query: 239 NINNSEFEELFARFGTITSSSLV-----SDKHIGFIEFIMPKHATHAVSTMNGHVFKSKP 293
+ ++ +E FA FGT TS+ ++ + + GF+ + P+ A AV+ MNG + +++P
Sbjct: 373 DFDDERLQEEFAPFGTTTSAKVMRTPTGASRGFGFVCYSAPEEANKAVAEMNGKMIENRP 432
Query: 294 LKVTLSGTK 302
L V L+ K
Sbjct: 433 LYVALAQRK 441
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 79/266 (29%), Positives = 131/266 (49%), Gaps = 25/266 (9%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V LEP+V+ L F G + +RV R+ S G+A + F ++++A ++
Sbjct: 82 LYVGELEPNVNEAILFEIFNMVGAVSSIRVCRDTVTRRSLGYAYVNFLNAEDSERALEQL 141
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N I +P I + + PGQR G +F+KNL E +D + L F FG
Sbjct: 142 NYTPIRGRPCRIMWSQRDPGQRRAGQG---------NIFIKNLDEAIDNKALHDTFAAFG 192
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
I+ K+ +E+G S G+GF+ + S AAE AI +NG ++ +V G +
Sbjct: 193 KILSCKVASNEHG-SLGYGFVHYESNDAAEAAIKHVNGMLLNDKKVYV-------GHHIS 244
Query: 216 PKVKPPLLQPARKN--KIFVANLPSNINNSEFEELFARFGTITSSSLVSDKH-----IGF 268
K + ++ AR + ++V NL + EFE+LF ++G ITS+++ +D+ GF
Sbjct: 245 KKDRQAKIEEARAHYTNVYVKNLDPAVTQEEFEKLFEKYGKITSAAIATDQEGKSRGFGF 304
Query: 269 IEFIMPKHATHAVSTMNGHVFKSKPL 294
+ F + A AV +N F + L
Sbjct: 305 VNFSEHEQAAKAVEELNDTEFHGQKL 330
>gi|444321552|ref|XP_004181432.1| hypothetical protein TBLA_0F03780 [Tetrapisispora blattae CBS 6284]
gi|387514476|emb|CCH61913.1| hypothetical protein TBLA_0F03780 [Tetrapisispora blattae CBS 6284]
Length = 577
Score = 127 bits (318), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 88/268 (32%), Positives = 129/268 (48%), Gaps = 24/268 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+PSV L + F G++ +RV R+ S G+A + FN K A ++
Sbjct: 45 LYVGELDPSVSEALLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGKTAIEKL 104
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N I +P I + + P R K G +F+KNL +D + L F FG
Sbjct: 105 NYTAIKGRPCRIMWSQRDPSMRKKGSG---------NIFIKNLHPDIDNKTLYETFSVFG 155
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ KI DE GKSKGFGF+ F + +AA +AI +NG ++ +V+ V
Sbjct: 156 NILSCKIANDETGKSKGFGFVHFENEEAAREAIDAINGMLLNGQEVYVA-------PHVS 208
Query: 216 PKVKPPLLQPARKN--KIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGF 268
K + L AR N ++V NL +FE LF +GTITS +L D + GF
Sbjct: 209 KKDRQSKLDEARANFTNVYVKNLDLEATEEDFENLFKPYGTITSVALEKDAEGKSRGFGF 268
Query: 269 IEFIMPKHATHAVSTMNGHVFKSKPLKV 296
++F + A AV +N +K + L V
Sbjct: 269 VDFENHEDAVKAVEALNDTEYKGQTLYV 296
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 81/276 (29%), Positives = 141/276 (51%), Gaps = 13/276 (4%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL P +DN+ L F FG + ++A ++ +S+GF + F A++A +N
Sbjct: 133 IFIKNLHPDIDNKTLYETFSVFGNILSCKIANDETGKSKGFGFVHFENEEAAREAIDAIN 192
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G L+ + V + K ++SK +E + V+VKNL EE+ ++ F +G
Sbjct: 193 GMLLNGQEVYVAPHVSKKDRQSKL---DEARANFTNVYVKNLDLEATEEDFENLFKPYGT 249
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPG 211
I V + +D GKS+GFGF+ F +++ A KA+ +N + + +V A+ +
Sbjct: 250 ITSVALEKDAEGKSRGFGFVDFENHEDAVKAVEALNDTEYKGQTLYVGRAQKKYERLQEL 309
Query: 212 KKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS-----DKHI 266
KK + K L + +F+ NL +I++ + +E FA FGTITS+ ++ K
Sbjct: 310 KKQYQASKLEKLAKYQGINLFIKNLDDSIDDEKLKEEFAPFGTITSARVMRTENGKSKGF 369
Query: 267 GFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ F P+ AT A++ N + KPL V ++ K
Sbjct: 370 GFVCFSTPEEATRAITEKNQQIVAGKPLYVAIAQRK 405
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 52/88 (59%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L + NL+ S+D++ L EF FGT+ RV R +N +S+GF + F+TP EA +A
Sbjct: 324 YQGINLFIKNLDDSIDDEKLKEEFAPFGTITSARVMRTENGKSKGFGFVCFSTPEEATRA 383
Query: 92 RVEMNGHLIGSKPVIITFVELKPGQRSK 119
E N ++ KP+ + + K +RS+
Sbjct: 384 ITEKNQQIVAGKPLYVAIAQRKDVRRSQ 411
>gi|67527154|ref|XP_661604.1| hypothetical protein AN4000.2 [Aspergillus nidulans FGSC A4]
gi|40740281|gb|EAA59471.1| conserved hypothetical protein [Aspergillus nidulans FGSC A4]
Length = 711
Score = 127 bits (318), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 84/268 (31%), Positives = 129/268 (48%), Gaps = 24/268 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+PSV L F G + +RV R+ S G+A + +N A ++A E+
Sbjct: 44 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGERALDEL 103
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI KP I + + P R G VF+KNL +D + L F FG
Sbjct: 104 NYTLIKGKPCRIMWSQRDPALRKTGQG---------NVFIKNLDSAIDNKALHDTFAAFG 154
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ +DE G SKG+GF+ + + +AA AI +NG ++ FV G +
Sbjct: 155 NILSCKVAQDEFGVSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFV-------GHHIS 207
Query: 216 PKVKPPLLQPARKN--KIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGF 268
K + + + N I++ N+ + + EF +LF +FG ITS++L D + GF
Sbjct: 208 KKDRQSKFEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKSRGFGF 267
Query: 269 IEFIMPKHATHAVSTMNGHVFKSKPLKV 296
+ F + A AV MN +S+ L V
Sbjct: 268 VNFSTHESAQAAVEEMNDKEVRSQKLYV 295
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 74/265 (27%), Positives = 138/265 (52%), Gaps = 18/265 (6%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK W + D R + N + + NL+ ++DN+AL + F FG +
Sbjct: 109 KGKPCRIMWSQ---RDPALRKTGQGN-------VFIKNLDSAIDNKALHDTFAAFGNILS 158
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+VA+++ S+G+ + + T A A +NG L+ K V + K ++SK
Sbjct: 159 CKVAQDEFGVSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKF--- 215
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
EE + +++KN+ V++EE + F KFG I + RD GKS+GFGF+ F ++++
Sbjct: 216 EEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKSRGFGFVNFSTHES 275
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAEIVPGK--KVFPKVKPPLLQPARKNK---IFVANLPS 238
A+ A+ EMN + ++ +V A+ + ++ + + ++ A K + ++V NL
Sbjct: 276 AQAAVEEMNDKEVRSQKLYVGRAQKKHEREEELRKQYEAARMEKASKYQGVNLYVKNLTD 335
Query: 239 NINNSEFEELFARFGTITSSSLVSD 263
++++ + ELF +GTITS+ ++ D
Sbjct: 336 DVDDDKLRELFGPYGTITSAKVMRD 360
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 61/233 (26%), Positives = 104/233 (44%), Gaps = 66/233 (28%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+++ N++P V+++ F+KFG + ++R+ +SRGF + F+T A+ A EMN
Sbjct: 225 IYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKSRGFGFVNFSTHESAQAAVEEMN 284
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDK-----------VFVKNLVETVDEE 145
+ S+ + + + K +R + + KQY+ + ++VKNL + VD++
Sbjct: 285 DKEVRSQKLYVGRAQKK-HEREEEL---RKQYEAARMEKASKYQGVNLYVKNLTDDVDDD 340
Query: 146 ELKSHFIKFGNIIEVKIVRD-------------------EN------------------- 167
+L+ F +G I K++RD EN
Sbjct: 341 KLRELFGPYGTITSAKVMRDTAPVETATPESETKESANKENEKAAEGEKEPAAEEKEKEE 400
Query: 168 -------------GKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
GKSKGFGF+ F S A KA+ EMN RM+ +V+LA+
Sbjct: 401 KKEAEQKPEKKPLGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQ 453
Score = 42.4 bits (98), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 56/151 (37%), Gaps = 53/151 (35%)
Query: 20 EGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVAR----------- 68
E AR K + Y+ L+V NL VD+ L F +GT+ +V R
Sbjct: 313 EAARMEKASK--YQGVNLYVKNLTDDVDDDKLRELFGPYGTITSAKVMRDTAPVETATPE 370
Query: 69 -------NKNDE---------------------------------SRGFAIIVFNTPAEA 88
NK +E S+GF + F++P EA
Sbjct: 371 SETKESANKENEKAAEGEKEPAAEEKEKEEKKEAEQKPEKKPLGKSKGFGFVCFSSPDEA 430
Query: 89 KKARVEMNGHLIGSKPVIITFVELKPGQRSK 119
KA EMN ++ KP+ + + K +RS+
Sbjct: 431 SKAVTEMNQRMVNGKPLYVALAQRKDVRRSQ 461
>gi|281212216|gb|EFA86376.1| RNA-binding region RNP-1 domain-containing protein [Polysphondylium
pallidum PN500]
Length = 562
Score = 127 bits (318), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 90/305 (29%), Positives = 151/305 (49%), Gaps = 24/305 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK W + D R + N + + NL+ +VD++AL + F FG +
Sbjct: 75 KGKACRIMWSQ---RDPSLRKSGIGN-------IFIKNLDKTVDHKALYDTFSAFGNILS 124
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V ++ + S+GF + + + A+KA ++NG +I ++ V + P + SK G
Sbjct: 125 CKVVTDETNTSKGFGFVHYESQESAEKAIAKVNGMMINNQKVFV-----GPFKSSKERG- 178
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
++ K VF+KNL E V E++L G I + I+ DE GKSKGFGF F A
Sbjct: 179 ATQEVKYTNVFIKNLSEDVSEQQLTDLLQAHGKITNLCIMTDEKGKSKGFGFANFEHADA 238
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNS 243
A+ A+ NG+M +V A+ ++ ++K + +++ NL +I++
Sbjct: 239 AKGAVENENGKMFSGKVIYVGRAQKKLEREA--ELKHKFETKYQGVNLYIKNLDDSIDSD 296
Query: 244 EFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVT 297
+ F+ +GTITSS ++ D K GF+ + P A+ AV+ M+G + SKPL V
Sbjct: 297 KLRATFSAYGTITSSKVMRDDKGSSSKGFGFVCYSTPDEASKAVAEMHGRMVGSKPLYVA 356
Query: 298 LSGTK 302
+ K
Sbjct: 357 FAQRK 361
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 80/272 (29%), Positives = 128/272 (47%), Gaps = 23/272 (8%)
Query: 31 VYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVAR-NKNDESRGFAIIVFNTPAEAK 89
+ + L+V +L P V L F + G + ++R+ R N S +A I ++ +A+
Sbjct: 4 TFSSSSLYVGDLHPDVSESHLFEVFNQVGPVANLRICRDNTTRRSLSYAYINYHNSTDAE 63
Query: 90 KARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKS 149
+A +N I K I + + P R +G +F+KNL +TVD + L
Sbjct: 64 RALDTLNNTPIKGKACRIMWSQRDPSLRKSGIG---------NIFIKNLDKTVDHKALYD 114
Query: 150 HFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIV 209
F FGNI+ K+V DE SKGFGF+ + S ++AEKAI ++NG MI + FV +
Sbjct: 115 TFSAFGNILSCKVVTDETNTSKGFGFVHYESQESAEKAIAKVNGMMINNQKVFVGPFKSS 174
Query: 210 PGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----K 264
+ +VK +F+ NL +++ + +L G IT+ +++D K
Sbjct: 175 KERGATQEVK--------YTNVFIKNLSEDVSEQQLTDLLQAHGKITNLCIMTDEKGKSK 226
Query: 265 HIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
GF F A AV NG +F K + V
Sbjct: 227 GFGFANFEHADAAKGAVENENGKMFSGKVIYV 258
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 55/89 (61%), Gaps = 1/89 (1%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKK 90
Y+ L++ NL+ S+D+ L F +GT+ +V R+ K S+GF + ++TP EA K
Sbjct: 279 YQGVNLYIKNLDDSIDSDKLRATFSAYGTITSSKVMRDDKGSSSKGFGFVCYSTPDEASK 338
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSK 119
A EM+G ++GSKP+ + F + K +R++
Sbjct: 339 AVAEMHGRMVGSKPLYVAFAQRKDVRRAQ 367
>gi|356548313|ref|XP_003542547.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Glycine max]
Length = 495
Score = 127 bits (318), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 94/312 (30%), Positives = 157/312 (50%), Gaps = 33/312 (10%)
Query: 5 GKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDV 64
GK++ W + D AR + N + V NL S+DN L + FKK+G +
Sbjct: 80 GKVIRVMW---LHRDPNARKSGRGN-------VFVKNLAGSIDNAGLHDLFKKYGNILSS 129
Query: 65 RVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIIT-FVELKPGQRSKPVGP 123
+V +++ +S+G+ + F A A ++NG +G+K + + FV + G R P G
Sbjct: 130 KVVMSEDGKSKGYGFVQFEWEESANNAIEKLNGSTVGNKQIYVGKFV--RKGDRILP-GY 186
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
+ K +++KNL + E L+ F FG II + I +D+NG SKGF F+ + +
Sbjct: 187 DAKY---TNLYIKNLDSDITEALLQEKFSSFGKIISLAISKDDNGLSKGFAFVNYENPDD 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLA--------EIVPGKKVFPKVKPPLLQPARKNKIFVAN 235
A+KA+ MNG +Q S ++ +A E + ++ K K +L+ N ++V N
Sbjct: 244 AKKAMEAMNG--LQFGSKYLYVARAQKKAEREQILHRQFEEKRKEQILKYQASN-LYVKN 300
Query: 236 LPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFK 290
+ ++ + E +LF+ GTITS ++ D K GF+ F P+ A AV + NG F
Sbjct: 301 IDDDVTDKELRDLFSSCGTITSVKVMRDDKGISKGFGFVCFSNPEEANKAVMSFNGCTFH 360
Query: 291 SKPLKVTLSGTK 302
KPL + ++ K
Sbjct: 361 RKPLYIAIAQRK 372
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 79/267 (29%), Positives = 128/267 (47%), Gaps = 22/267 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
++V +L P V L F +FG++ VRV R++ S + + F + +A +A
Sbjct: 14 IYVGDLHPDVQEHHLFAAFVEFGSIASVRVCRDRVTMNSLCYGYVNFRSQQDAIRAIKLR 73
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N + K + + ++ P R G VFVKNL ++D L F K+G
Sbjct: 74 NNSYLNGKVIRVMWLHRDPNARKSGRG---------NVFVKNLAGSIDNAGLHDLFKKYG 124
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+V E+GKSKG+GF+QF ++A AI ++NG + + +V + G ++
Sbjct: 125 NILSSKVVMSEDGKSKGYGFVQFEWEESANNAIEKLNGSTVGNKQIYVG-KFVRKGDRIL 183
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIE 270
P A+ +++ NL S+I + +E F+ FG I S ++ D K F+
Sbjct: 184 PGYD------AKYTNLYIKNLDSDITEALLQEKFSSFGKIISLAISKDDNGLSKGFAFVN 237
Query: 271 FIMPKHATHAVSTMNGHVFKSKPLKVT 297
+ P A A+ MNG F SK L V
Sbjct: 238 YENPDDAKKAMEAMNGLQFGSKYLYVA 264
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 48/88 (54%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ + L+V N++ V ++ L + F GT+ V+V R+ S+GF + F+ P EA KA
Sbjct: 291 YQASNLYVKNIDDDVTDKELRDLFSSCGTITSVKVMRDDKGISKGFGFVCFSNPEEANKA 350
Query: 92 RVEMNGHLIGSKPVIITFVELKPGQRSK 119
+ NG KP+ I + K ++++
Sbjct: 351 VMSFNGCTFHRKPLYIAIAQRKKERKTQ 378
>gi|1616770|gb|AAB16848.1| putative poly(A)-binding protein FabM [Emericella nidulans]
Length = 705
Score = 127 bits (318), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 84/268 (31%), Positives = 129/268 (48%), Gaps = 24/268 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+PSV L F G + +RV R+ S G+A + +N A ++A E+
Sbjct: 44 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGERALDEL 103
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI KP I + + P R G VF+KNL +D + L F FG
Sbjct: 104 NYTLIKGKPCRIMWSQRDPALRKTGQG---------NVFIKNLDSAIDNKALHDTFAAFG 154
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ +DE G SKG+GF+ + + +AA AI +NG ++ FV G +
Sbjct: 155 NILSCKVAQDEFGVSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFV-------GHHIS 207
Query: 216 PKVKPPLLQPARKN--KIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGF 268
K + + + N I++ N+ + + EF +LF +FG ITS++L D + GF
Sbjct: 208 KKDRQSKFEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKSRGFGF 267
Query: 269 IEFIMPKHATHAVSTMNGHVFKSKPLKV 296
+ F + A AV MN +S+ L V
Sbjct: 268 VNFSTHESAQAAVEEMNDKEVRSQKLYV 295
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 74/265 (27%), Positives = 138/265 (52%), Gaps = 18/265 (6%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK W + D R + N + + NL+ ++DN+AL + F FG +
Sbjct: 109 KGKPCRIMWSQ---RDPALRKTGQGN-------VFIKNLDSAIDNKALHDTFAAFGNILS 158
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+VA+++ S+G+ + + T A A +NG L+ K V + K ++SK
Sbjct: 159 CKVAQDEFGVSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKF--- 215
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
EE + +++KN+ V++EE + F KFG I + RD GKS+GFGF+ F ++++
Sbjct: 216 EEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKSRGFGFVNFSTHES 275
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAEIVPGK--KVFPKVKPPLLQPARKNK---IFVANLPS 238
A+ A+ EMN + ++ +V A+ + ++ + + ++ A K + ++V NL
Sbjct: 276 AQAAVEEMNDKEVRSQKLYVGRAQKKHEREEELRKQYEAARMEKASKYQGVNLYVKNLTD 335
Query: 239 NINNSEFEELFARFGTITSSSLVSD 263
++++ + ELF +GTITS+ ++ D
Sbjct: 336 DVDDDKLRELFGPYGTITSAKVMRD 360
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 61/233 (26%), Positives = 104/233 (44%), Gaps = 66/233 (28%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+++ N++P V+++ F+KFG + ++R+ +SRGF + F+T A+ A EMN
Sbjct: 225 IYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKSRGFGFVNFSTHESAQAAVEEMN 284
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDK-----------VFVKNLVETVDEE 145
+ S+ + + + K +R + + KQY+ + ++VKNL + VD++
Sbjct: 285 DKEVRSQKLYVGRAQKK-HEREEEL---RKQYEAARMEKASKYQGVNLYVKNLTDDVDDD 340
Query: 146 ELKSHFIKFGNIIEVKIVRD-------------------EN------------------- 167
+L+ F +G I K++RD EN
Sbjct: 341 KLRELFGPYGTITSAKVMRDTAPVETATPESETKESANKENEKAAEGEKEPAAEEKEKEE 400
Query: 168 -------------GKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
GKSKGFGF+ F S A KA+ EMN RM+ +V+LA+
Sbjct: 401 EKEAEQKPEKKPLGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQ 453
Score = 42.4 bits (98), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 56/151 (37%), Gaps = 53/151 (35%)
Query: 20 EGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVAR----------- 68
E AR K + Y+ L+V NL VD+ L F +GT+ +V R
Sbjct: 313 EAARMEKASK--YQGVNLYVKNLTDDVDDDKLRELFGPYGTITSAKVMRDTAPVETATPE 370
Query: 69 -------NKNDE---------------------------------SRGFAIIVFNTPAEA 88
NK +E S+GF + F++P EA
Sbjct: 371 SETKESANKENEKAAEGEKEPAAEEKEKEEEKEAEQKPEKKPLGKSKGFGFVCFSSPDEA 430
Query: 89 KKARVEMNGHLIGSKPVIITFVELKPGQRSK 119
KA EMN ++ KP+ + + K +RS+
Sbjct: 431 SKAVTEMNQRMVNGKPLYVALAQRKDVRRSQ 461
>gi|392595814|gb|EIW85137.1| polyadenylate binding protein [Coniophora puteana RWD-64-598 SS2]
Length = 683
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 79/267 (29%), Positives = 134/267 (50%), Gaps = 20/267 (7%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+P+V + F G + +RV R+ S G+A + + A+ ++A ++
Sbjct: 47 LYVGELDPTVTEAMIFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNTADGERALEQL 106
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI +P I + + P R G +F+KNL E +D + L F+ FG
Sbjct: 107 NYSLIKGRPCRIMWSQRDPALRKTGQG---------NIFIKNLDEQIDNKALHDTFVAFG 157
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
N++ K+ DE G+SKG+GF+ + + +AAE AI +NG ++ +V +P K+
Sbjct: 158 NVLSCKVATDEQGRSKGYGFVHYETAEAAETAIKAVNGMLLNDKKVYV--GPHIPRKERQ 215
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIE 270
K+ A+ +++ NL + + EFEELF R+G++TS+ + D K GF+
Sbjct: 216 SKLDE---MKAQFTNLYIKNLDTEVTQEEFEELFNRYGSVTSAIVQVDDEGRSKGFGFVN 272
Query: 271 FIMPKHATHAVSTMNGHVFKSKPLKVT 297
+ + A AV ++ K K L VT
Sbjct: 273 YESHEEAQAAVDNLHDTDLKGKKLYVT 299
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 85/317 (26%), Positives = 153/317 (48%), Gaps = 45/317 (14%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KG+ W + D R + N + + NL+ +DN+AL + F FG +
Sbjct: 112 KGRPCRIMWSQ---RDPALRKTGQGN-------IFIKNLDEQIDNKALHDTFVAFGNVLS 161
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+VA ++ S+G+ + + T A+ A +NG L+ K V VGP
Sbjct: 162 CKVATDEQGRSKGYGFVHYETAEAAETAIKAVNGMLLNDKKVY--------------VGP 207
Query: 124 ----EEKQYKKDK-------VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKG 172
+E+Q K D+ +++KNL V +EE + F ++G++ + D+ G+SKG
Sbjct: 208 HIPRKERQSKLDEMKAQFTNLYIKNLDTEVTQEEFEELFNRYGSVTSAIVQVDDEGRSKG 267
Query: 173 FGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPG-----KKVFPKVKPPLLQPAR 227
FGF+ + S++ A+ A+ ++ ++ +V+ A+ ++ + + K L +
Sbjct: 268 FGFVNYESHEEAQAAVDNLHDTDLKGKKLYVTRAQKKAEREEELRRSYEQAKMEKLSKYQ 327
Query: 228 KNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVS 282
++V NL ++++ + F FGTITS ++SD K GF+ F P AT A++
Sbjct: 328 GVNLYVKNLEDDVDDDKLRAEFEPFGTITSCKVMSDEKGSSKGFGFVCFSSPDEATKAIA 387
Query: 283 TMNGHVFKSKPLKVTLS 299
MN + SKPL V+L+
Sbjct: 388 EMNNKMIGSKPLYVSLA 404
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 95/179 (53%), Gaps = 9/179 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L++ NL+ V + F ++G++ V + S+GF + + + EA+ A ++
Sbjct: 228 LYIKNLDTEVTQEEFEELFNRYGSVTSAIVQVDDEGRSKGFGFVNYESHEEAQAAVDNLH 287
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKV--------FVKNLVETVDEEELK 148
+ K + +T + K +R + + +Q K +K+ +VKNL + VD+++L+
Sbjct: 288 DTDLKGKKLYVTRAQKK-AEREEELRRSYEQAKMEKLSKYQGVNLYVKNLEDDVDDDKLR 346
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
+ F FG I K++ DE G SKGFGF+ F S A KAI EMN +MI +VSLA+
Sbjct: 347 AEFEPFGTITSCKVMSDEKGSSKGFGFVCFSSPDEATKAIAEMNNKMIGSKPLYVSLAQ 405
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 53/88 (60%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L+V NLE VD+ L EF+ FGT+ +V ++ S+GF + F++P EA KA
Sbjct: 326 YQGVNLYVKNLEDDVDDDKLRAEFEPFGTITSCKVMSDEKGSSKGFGFVCFSSPDEATKA 385
Query: 92 RVEMNGHLIGSKPVIITFVELKPGQRSK 119
EMN +IGSKP+ ++ + + +R +
Sbjct: 386 IAEMNNKMIGSKPLYVSLAQRREVRRQQ 413
>gi|358058232|dbj|GAA95909.1| hypothetical protein E5Q_02567 [Mixia osmundae IAM 14324]
Length = 614
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 91/312 (29%), Positives = 151/312 (48%), Gaps = 29/312 (9%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK W + D R N + + NL+ S+DN+AL + F FG +
Sbjct: 46 KGKPCRIMWSQ---RDPALRKTSLGN-------IFIKNLDESIDNKALHDTFAAFGNILS 95
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+VA ++N S+G+ + + A+ A +NG L+ K + +V +R +
Sbjct: 96 CKVALDENGLSKGYGFVHYEGGEAAEAAIQAVNGMLLNDK---VVYVGHHVPRRERQAKI 152
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
+E + ++VK L + E E F K+G + + D++GKSKGFGF+ F ++A
Sbjct: 153 DEVRSNYTNLYVKGLAPEISEAEFSELFAKYGQVTSAVLQVDQDGKSKGFGFVNFADHEA 212
Query: 184 AEKAIIEMNGRMIQHNSTFVSLA--------EIVPGKKVFPKVKPPLLQPARKNKIFVAN 235
A KA+ E++ + + +VS A E+ KK + + K + ++V N
Sbjct: 213 AAKALTELHDSEHKGQTLYVSRAQKKGEREEEL---KKSYEQQKYDKSLKYQGVNLYVKN 269
Query: 236 LPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFK 290
L +++ + FA FGTITS+ ++ D K GF+ F P AT AV+ +NG +F
Sbjct: 270 LEDDMDEEKVTAEFAAFGTITSTKIMRDEKGASKGFGFVCFSSPDEATKAVTELNGKMFG 329
Query: 291 SKPLKVTLSGTK 302
KPL V+L+ K
Sbjct: 330 QKPLYVSLAQRK 341
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/248 (31%), Positives = 125/248 (50%), Gaps = 24/248 (9%)
Query: 58 FGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQ 116
G++ +RV R+ S G+A + F A+ ++A ++N I KP I + + P
Sbjct: 2 IGSVASIRVCRDAVTRRSLGYAYVNFMNAADGERALEQLNYTPIKGKPCRIMWSQRDPAL 61
Query: 117 RSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFI 176
R +G +F+KNL E++D + L F FGNI+ K+ DENG SKG+GF+
Sbjct: 62 RKTSLG---------NIFIKNLDESIDNKALHDTFAAFGNILSCKVALDENGLSKGYGFV 112
Query: 177 QFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKN--KIFVA 234
+ +AAE AI +NG ++ N V + VP ++ K+ R N ++V
Sbjct: 113 HYEGGEAAEAAIQAVNGMLL--NDKVVYVGHHVPRRERQAKID-----EVRSNYTNLYVK 165
Query: 235 NLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVF 289
L I+ +EF ELFA++G +TS+ L D K GF+ F + A A++ ++
Sbjct: 166 GLAPEISEAEFSELFAKYGQVTSAVLQVDQDGKSKGFGFVNFADHEAAAKALTELHDSEH 225
Query: 290 KSKPLKVT 297
K + L V+
Sbjct: 226 KGQTLYVS 233
>gi|413918857|gb|AFW58789.1| hypothetical protein ZEAMMB73_983608 [Zea mays]
Length = 412
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 85/276 (30%), Positives = 143/276 (51%), Gaps = 15/276 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ ++DN+ L F FGT+ +VA ++ +S+GF + ++ A+ A +N
Sbjct: 124 IFIKNLDKTIDNKTLHETFSSFGTILSCKVAVDEAGQSKGFGFVQYDKEEAAQNAIKSLN 183
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G LI KPV + P R + + K + VFVKNL E+ +E+L F ++G+
Sbjct: 184 GMLINDKPVFVG-----PFVRKQERDHSFDKTKFNNVFVKNLSESTTKEDLLKIFGEYGD 238
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFP 216
I ++ +GKS+ FGFI F + AA A+ E+NG+ I +V A+ +++
Sbjct: 239 ITSAVVMIGMDGKSRCFGFINFENPDAASHAVQELNGKKINDKEWYVGRAQKKSEREMEL 298
Query: 217 KVK--PPLLQPARKNK---IFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHI 266
K + L A K + +++ NL +I + + ELF+ FG ITS ++ D K
Sbjct: 299 KRRFEQSLKDAADKYQGLNLYLKNLDDSIGDDQLCELFSNFGKITSYKVMRDQNGLSKGS 358
Query: 267 GFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ F + A+ A++ MNG + KPL V + K
Sbjct: 359 GFVAFSTREEASQALTEMNGKMISGKPLYVAFAQRK 394
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 77/256 (30%), Positives = 126/256 (49%), Gaps = 22/256 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKKARVEM 95
L+V +LE +V + L F + G + VRV R+ + S G+A + ++ P +A +A +
Sbjct: 36 LYVGDLEGAVSDSQLYELFSQAGQVVSVRVCRDVTSRRSLGYAYVNYSNPLDAARALEVL 95
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N + +KP+ + + P R +F+KNL +T+D + L F FG
Sbjct: 96 NFAALNNKPIRVMYSNRDPSSRRSGSA---------NIFIKNLDKTIDNKTLHETFSSFG 146
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
I+ K+ DE G+SKGFGF+Q+ +AA+ AI +NG +I FV G V
Sbjct: 147 TILSCKVAVDEAGQSKGFGFVQYDKEEAAQNAIKSLNGMLINDKPVFV-------GPFVR 199
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLV-----SDKHIGFIE 270
+ + + N +FV NL + + ++F +G ITS+ ++ + GFI
Sbjct: 200 KQERDHSFDKTKFNNVFVKNLSESTTKEDLLKIFGEYGDITSAVVMIGMDGKSRCFGFIN 259
Query: 271 FIMPKHATHAVSTMNG 286
F P A+HAV +NG
Sbjct: 260 FENPDAASHAVQELNG 275
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 100/201 (49%), Gaps = 11/201 (5%)
Query: 33 KENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKAR 92
K N + V NL S + L+ F ++G + V + +SR F I F P A A
Sbjct: 211 KFNNVFVKNLSESTTKEDLLKIFGEYGDITSAVVMIGMDGKSRCFGFINFENPDAASHAV 270
Query: 93 VEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDK--------VFVKNLVETVDE 144
E+NG I K + + K +R + +Q KD +++KNL +++ +
Sbjct: 271 QELNGKKINDKEWYVGRAQ-KKSEREMELKRRFEQSLKDAADKYQGLNLYLKNLDDSIGD 329
Query: 145 EELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVS 204
++L F FG I K++RD+NG SKG GF+ F + + A +A+ EMNG+MI +V+
Sbjct: 330 DQLCELFSNFGKITSYKVMRDQNGLSKGSGFVAFSTREEASQALTEMNGKMISGKPLYVA 389
Query: 205 LAEIVPGKKVFPKVKPPLLQP 225
A+ +K +V +L+P
Sbjct: 390 FAQRKEDRKAMLQV--TVLKP 408
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 53/96 (55%)
Query: 23 RSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVF 82
+S K+ Y+ L++ NL+ S+ + L F FG + +V R++N S+G + F
Sbjct: 304 QSLKDAADKYQGLNLYLKNLDDSIGDDQLCELFSNFGKITSYKVMRDQNGLSKGSGFVAF 363
Query: 83 NTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRS 118
+T EA +A EMNG +I KP+ + F + K +++
Sbjct: 364 STREEASQALTEMNGKMISGKPLYVAFAQRKEDRKA 399
Score = 42.4 bits (98), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 50/108 (46%), Gaps = 12/108 (11%)
Query: 208 IVP--GKKVFPKVKPP----LLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLV 261
+VP G P V P + QP ++V +L +++S+ ELF++ G + S +
Sbjct: 7 VVPNGGPGAVPAVVSPGAVGVAQPLPTTSLYVGDLEGAVSDSQLYELFSQAGQVVSVRVC 66
Query: 262 SD----KHIG--FIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKP 303
D + +G ++ + P A A+ +N +KP++V S P
Sbjct: 67 RDVTSRRSLGYAYVNYSNPLDAARALEVLNFAALNNKPIRVMYSNRDP 114
>gi|356572504|ref|XP_003554408.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Glycine max]
Length = 636
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 95/310 (30%), Positives = 156/310 (50%), Gaps = 29/310 (9%)
Query: 5 GKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDV 64
GK + W D AR + N L V NL S+DN L + FKK+G +
Sbjct: 80 GKAMRVMWSR---RDPDARKSAIGN-------LFVKNLPESIDNAGLQDIFKKYGNILSS 129
Query: 65 RVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVII-TFVELKPGQRSKPVGP 123
+V +++ +S+G+ + F + +K A ++NG+ + K + + FV K R P GP
Sbjct: 130 KVVTSEDGKSKGYGFVQFESEESSKVAIEKLNGYTVADKELYVGKFV--KKSDRILP-GP 186
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
+ + +++KNL V E L+ F FG I+ + I +D NG SKGFGF+ + +
Sbjct: 187 DARY---TNLYMKNLDLDVSEATLQEKFSSFGKIVSLVIAKDNNGMSKGFGFVNYDNPDD 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLA------EIVPGKKVFPKVKPPLLQPARKNKIFVANLP 237
A+KA+ MNG + +V+ A E + + K K +L+ N I+V N+
Sbjct: 244 AKKAMEAMNGSQLGSKILYVARAQKKAEREQILHHQFEEKQKEQILKYKGSN-IYVKNID 302
Query: 238 SNINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSK 292
++++ E + F+ GTITS+ ++ D K GF+ F P+ A AV+T +G ++ K
Sbjct: 303 DHVSDEELRDHFSACGTITSAKIMRDDKGISKGFGFVCFSTPEEANKAVNTFHGFMYHGK 362
Query: 293 PLKVTLSGTK 302
PL V L+ K
Sbjct: 363 PLYVALAQRK 372
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 80/272 (29%), Positives = 133/272 (48%), Gaps = 32/272 (11%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKND-ESRGFAIIVFNTPAEAKKARVEM 95
L+V +L P V + L++ F +F +L VRV ++ + +S + + F +P +A +A
Sbjct: 14 LYVGDLHPDVSDSHLVDAFSEFKSLASVRVCKDSSTGKSLCYGYLNFVSPQDAIRAIELK 73
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N + K + + + P R +G +FVKNL E++D L+ F K+G
Sbjct: 74 NNSTLNGKAMRVMWSRRDPDARKSAIG---------NLFVKNLPESIDNAGLQDIFKKYG 124
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVS-----LAEIVP 210
NI+ K+V E+GKSKG+GF+QF S ++++ AI ++NG + +V I+P
Sbjct: 125 NILSSKVVTSEDGKSKGYGFVQFESEESSKVAIEKLNGYTVADKELYVGKFVKKSDRILP 184
Query: 211 GKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KH 265
G AR +++ NL +++ + +E F+ FG I S + D K
Sbjct: 185 GPD------------ARYTNLYMKNLDLDVSEATLQEKFSSFGKIVSLVIAKDNNGMSKG 232
Query: 266 IGFIEFIMPKHATHAVSTMNGHVFKSKPLKVT 297
GF+ + P A A+ MNG SK L V
Sbjct: 233 FGFVNYDNPDDAKKAMEAMNGSQLGSKILYVA 264
>gi|70990636|ref|XP_750167.1| polyadenylate-binding protein [Aspergillus fumigatus Af293]
gi|74669855|sp|Q4WK03.1|PABP_ASPFU RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|66847799|gb|EAL88129.1| polyadenylate-binding protein [Aspergillus fumigatus Af293]
gi|159130644|gb|EDP55757.1| polyadenylate-binding protein [Aspergillus fumigatus A1163]
Length = 753
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 81/268 (30%), Positives = 128/268 (47%), Gaps = 24/268 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+PSV L F G + +RV R+ S G+A + +N A+ ++A ++
Sbjct: 54 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 113
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI KP I + + P R G VF+KNL +D + L F FG
Sbjct: 114 NYTLIKGKPCRIMWSQRDPALRKTGQG---------NVFIKNLDAAIDNKALHDTFAAFG 164
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ +DE G SKG+GF+ + + +AA AI +NG ++ FV G +
Sbjct: 165 NILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFV-------GHHIS 217
Query: 216 PKVKPPLLQPARKN--KIFVANLPSNINNSEFEELFARFGTITSSSLVSDKH-----IGF 268
K + + + N +++ N+ + + EF ++F +FG ITS++L D+ GF
Sbjct: 218 KKDRQSKFEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRGFGF 277
Query: 269 IEFIMPKHATHAVSTMNGHVFKSKPLKV 296
+ F A AV MN K + L V
Sbjct: 278 VNFSTHDSAQAAVDEMNDKEIKGQKLYV 305
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 93/353 (26%), Positives = 159/353 (45%), Gaps = 70/353 (19%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK W + D R + N + + NL+ ++DN+AL + F FG +
Sbjct: 119 KGKPCRIMWSQ---RDPALRKTGQGN-------VFIKNLDAAIDNKALHDTFAAFGNILS 168
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+VA+++ S+G+ + + T A A +NG L+ K V + K ++SK
Sbjct: 169 CKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKF--- 225
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
EE + V++KN+ + V +EE + F KFG I + RD+ GKS+GFGF+ F ++ +
Sbjct: 226 EEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHDS 285
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAEIVPGK--KVFPKVKPPLLQPARKNK---IFVANLPS 238
A+ A+ EMN + I+ +V A+ + ++ + + L+ A K + ++V NL
Sbjct: 286 AQAAVDEMNDKEIKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTD 345
Query: 239 NINNSEFEELFARFGTITSSSLVSD----------------------------------- 263
++++ + ELF+ FGTITS+ ++ D
Sbjct: 346 DVDDEKLRELFSPFGTITSAKVMRDTVTTGETSESEKEKEKESNKENEKEGEEKTEEKPK 405
Query: 264 -----------------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299
K GF+ F P A+ AV+ MN + KPL V L+
Sbjct: 406 ESEEEPKKTEKKILGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALA 458
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 100/229 (43%), Gaps = 62/229 (27%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+++ N++ V ++ F+KFG + ++R++ +SRGF + F+T A+ A EMN
Sbjct: 235 VYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHDSAQAAVDEMN 294
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKV-----------FVKNLVETVDEE 145
I + + + + K +R + + KQY+ ++ +VKNL + VD+E
Sbjct: 295 DKEIKGQKLYVGRAQKK-HEREEEL---RKQYEAARLEKASKYQGVNLYVKNLTDDVDDE 350
Query: 146 ELKSHFIKFGNIIEVKIVRDEN-------------------------------------- 167
+L+ F FG I K++RD
Sbjct: 351 KLRELFSPFGTITSAKVMRDTVTTGETSESEKEKEKESNKENEKEGEEKTEEKPKESEEE 410
Query: 168 ---------GKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
GKSKGFGF+ F S A KA+ EMN RM+ +V+LA+
Sbjct: 411 PKKTEKKILGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQ 459
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 77/176 (43%), Gaps = 17/176 (9%)
Query: 123 PEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSY 181
P Q ++V L +V E L F G + +++ RD +S G+ ++ + +
Sbjct: 44 PSASQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 103
Query: 182 KAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNIN 241
E+A+ ++N +I+ + ++ + P L+ + +F+ NL + I+
Sbjct: 104 ADGERALEDLNYTLIKGKPCRIMWSQ-----------RDPALRKTGQGNVFIKNLDAAID 152
Query: 242 NSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSK 292
N + FA FG I S + D K GF+ + + A +A+ +NG + K
Sbjct: 153 NKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDK 208
Score = 42.4 bits (98), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 55/147 (37%), Gaps = 49/147 (33%)
Query: 20 EGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKN-------- 71
E AR K + Y+ L+V NL VD++ L F FGT+ +V R+
Sbjct: 323 EAARLEKASK--YQGVNLYVKNLTDDVDDEKLRELFSPFGTITSAKVMRDTVTTGETSES 380
Query: 72 ---------------------------------------DESRGFAIIVFNTPAEAKKAR 92
+S+GF + F++P EA KA
Sbjct: 381 EKEKEKESNKENEKEGEEKTEEKPKESEEEPKKTEKKILGKSKGFGFVCFSSPDEASKAV 440
Query: 93 VEMNGHLIGSKPVIITFVELKPGQRSK 119
EMN ++ KP+ + + K +RS+
Sbjct: 441 TEMNQRMVNGKPLYVALAQRKDVRRSQ 467
>gi|320167378|gb|EFW44277.1| poly A binding protein [Capsaspora owczarzaki ATCC 30864]
Length = 662
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 89/274 (32%), Positives = 138/274 (50%), Gaps = 25/274 (9%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
+ L+V +L P V L F G + +RV R+ S G+A + F+ +A++
Sbjct: 42 FPSGSLYVGDLHPEVTEAQLFEIFNNIGPVVSIRVCRDAITRRSLGYAYVNFHAAVDAER 101
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A +N LI KP I + + P R +G VF+KNL +T+D + L
Sbjct: 102 ALDTLNYSLIRGKPCRIMWSQRDPAVRKSGLG---------NVFIKNLDKTIDNKALLDT 152
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVP 210
F FGNI+ K+V DENG SKG+GF+ + + +AAE AI ++NG +I FV + VP
Sbjct: 153 FSAFGNILSCKVVTDENG-SKGYGFVHYETQEAAETAIAKVNGMVINGKQVFVGI--FVP 209
Query: 211 GKKVFPKVKPPLLQPARK-NKIFVANLPSNINNSEFEELFARFGTITSSSLV--SD---- 263
K+ + L + K +FV NLP + ++ ++F++FG ITS ++ SD
Sbjct: 210 RKE-----RVELGEGVTKFTNVFVKNLPEDTTDAALNDMFSKFGKITSVVIMKSSDDDKS 264
Query: 264 KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVT 297
K GF+ + + A AV+ +NG K L V
Sbjct: 265 KGFGFVCYEKVEDAQAAVNALNGTELAGKTLFVA 298
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 90/277 (32%), Positives = 142/277 (51%), Gaps = 20/277 (7%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ ++DN+AL++ F FG + +V ++N S+G+ + + T A+ A ++N
Sbjct: 135 VFIKNLDKTIDNKALLDTFSAFGNILSCKVVTDENG-SKGYGFVHYETQEAAETAIAKVN 193
Query: 97 GHLIGSKPVII-TFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
G +I K V + FV R + V E K VFVKNL E + L F KFG
Sbjct: 194 GMVINGKQVFVGIFVP-----RKERVELGEGVTKFTNVFVKNLPEDTTDAALNDMFSKFG 248
Query: 156 NIIEVKIVRD-ENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKV 214
I V I++ ++ KSKGFGF+ + + A+ A+ +NG + + FV+ A+ ++
Sbjct: 249 KITSVVIMKSSDDDKSKGFGFVCYEKVEDAQAAVNALNGTELAGKTLFVARAQKKAEREA 308
Query: 215 FPKVKPPLLQPARKNK-----IFVANLPSNINNSEFEELFARFGTITSSSLVSD-----K 264
K + L+ R NK ++V NL I+ + FA FGTITS ++ D +
Sbjct: 309 ELKQRYDALRLERINKYQGINLYVKNLDDAIDEDKIRTEFAPFGTITSVKIMRDEKGKSR 368
Query: 265 HIGFIEFIMPKHATHAVSTMNGHVFKS--KPLKVTLS 299
GFI F + AT AV+ MNG + KPL V L+
Sbjct: 369 GFGFICFSSAEEATKAVTEMNGQTIQGFPKPLYVALA 405
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/189 (34%), Positives = 104/189 (55%), Gaps = 14/189 (7%)
Query: 31 VYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDE-SRGFAIIVFNTPAEAK 89
V K + V NL + AL + F KFG + V + ++ +D+ S+GF + + +A+
Sbjct: 220 VTKFTNVFVKNLPEDTTDAALNDMFSKFGKITSVVIMKSSDDDKSKGFGFVCYEKVEDAQ 279
Query: 90 KARVEMNGHLIGSKPVIITFV--------ELKPGQRSKPVGPEE-KQYKKDKVFVKNLVE 140
A +NG + K + + ELK QR + E +Y+ ++VKNL +
Sbjct: 280 AAVNALNGTELAGKTLFVARAQKKAEREAELK--QRYDALRLERINKYQGINLYVKNLDD 337
Query: 141 TVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQH-- 198
+DE+++++ F FG I VKI+RDE GKS+GFGFI F S + A KA+ EMNG+ IQ
Sbjct: 338 AIDEDKIRTEFAPFGTITSVKIMRDEKGKSRGFGFICFSSAEEATKAVTEMNGQTIQGFP 397
Query: 199 NSTFVSLAE 207
+V+LA+
Sbjct: 398 KPLYVALAQ 406
>gi|119496945|ref|XP_001265244.1| polyadenylate-binding protein [Neosartorya fischeri NRRL 181]
gi|158512647|sp|A1D4K4.1|PABP_NEOFI RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|119413406|gb|EAW23347.1| polyadenylate-binding protein [Neosartorya fischeri NRRL 181]
Length = 751
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 81/268 (30%), Positives = 128/268 (47%), Gaps = 24/268 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+PSV L F G + +RV R+ S G+A + +N A+ ++A ++
Sbjct: 54 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 113
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI KP I + + P R G VF+KNL +D + L F FG
Sbjct: 114 NYTLIKGKPCRIMWSQRDPALRKTGQG---------NVFIKNLDAAIDNKALHDTFAAFG 164
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ +DE G SKG+GF+ + + +AA AI +NG ++ FV G +
Sbjct: 165 NILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFV-------GHHIS 217
Query: 216 PKVKPPLLQPARKN--KIFVANLPSNINNSEFEELFARFGTITSSSLVSDKH-----IGF 268
K + + + N +++ N+ + + EF ++F +FG ITS++L D+ GF
Sbjct: 218 KKDRQSKFEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRGFGF 277
Query: 269 IEFIMPKHATHAVSTMNGHVFKSKPLKV 296
+ F A AV MN K + L V
Sbjct: 278 VNFSTHDSAQAAVDEMNDKEIKGQKLYV 305
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 93/351 (26%), Positives = 159/351 (45%), Gaps = 68/351 (19%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK W + D R + N + + NL+ ++DN+AL + F FG +
Sbjct: 119 KGKPCRIMWSQ---RDPALRKTGQGN-------VFIKNLDAAIDNKALHDTFAAFGNILS 168
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+VA+++ S+G+ + + T A A +NG L+ K V + K ++SK
Sbjct: 169 CKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKF--- 225
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
EE + V++KN+ + V +EE + F KFG I + RD+ GKS+GFGF+ F ++ +
Sbjct: 226 EEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHDS 285
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAEIVPGK--KVFPKVKPPLLQPARKNK---IFVANLPS 238
A+ A+ EMN + I+ +V A+ + ++ + + L+ A K + ++V NL
Sbjct: 286 AQAAVDEMNDKEIKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTD 345
Query: 239 NINNSEFEELFARFGTITSSSLVSD----------------------------------- 263
++++ + ELF+ FGTITS+ ++ D
Sbjct: 346 DVDDEKLRELFSPFGTITSAKVMRDTVTAGETSESEKEKESNKENEKEGEEKTEEKPKES 405
Query: 264 ---------------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299
K GF+ F P A+ AV+ MN + KPL V L+
Sbjct: 406 EEEAKKTEKKILGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALA 456
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/227 (26%), Positives = 100/227 (44%), Gaps = 60/227 (26%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+++ N++ V ++ F+KFG + ++R++ +SRGF + F+T A+ A EMN
Sbjct: 235 VYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHDSAQAAVDEMN 294
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKV-----------FVKNLVETVDEE 145
I + + + + K +R + + KQY+ ++ +VKNL + VD+E
Sbjct: 295 DKEIKGQKLYVGRAQKK-HEREEEL---RKQYEAARLEKASKYQGVNLYVKNLTDDVDDE 350
Query: 146 ELKSHFIKFGNIIEVKIVRDEN-------------------------------------- 167
+L+ F FG I K++RD
Sbjct: 351 KLRELFSPFGTITSAKVMRDTVTAGETSESEKEKESNKENEKEGEEKTEEKPKESEEEAK 410
Query: 168 -------GKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
GKSKGFGF+ F S A KA+ EMN RM+ +V+LA+
Sbjct: 411 KTEKKILGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQ 457
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/219 (22%), Positives = 93/219 (42%), Gaps = 22/219 (10%)
Query: 81 VFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVG-PEEKQYKKDKVFVKNLV 139
V TPA A +NG + P + E+ + + P P Q ++V L
Sbjct: 5 VSTTPA----ADNTVNGTPEATNPAATSAPEVTAVESASPSATPSANQPHSASLYVGELD 60
Query: 140 ETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQH 198
+V E L F G + +++ RD +S G+ ++ + + E+A+ ++N +I+
Sbjct: 61 PSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKG 120
Query: 199 NSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSS 258
+ ++ + P L+ + +F+ NL + I+N + FA FG I S
Sbjct: 121 KPCRIMWSQ-----------RDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSC 169
Query: 259 SLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSK 292
+ D K GF+ + + A +A+ +NG + K
Sbjct: 170 KVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDK 208
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 55/145 (37%), Gaps = 47/145 (32%)
Query: 20 EGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKN-------- 71
E AR K + Y+ L+V NL VD++ L F FGT+ +V R+
Sbjct: 323 EAARLEKASK--YQGVNLYVKNLTDDVDDEKLRELFSPFGTITSAKVMRDTVTAGETSES 380
Query: 72 -------------------------------------DESRGFAIIVFNTPAEAKKARVE 94
+S+GF + F++P EA KA E
Sbjct: 381 EKEKESNKENEKEGEEKTEEKPKESEEEAKKTEKKILGKSKGFGFVCFSSPDEASKAVTE 440
Query: 95 MNGHLIGSKPVIITFVELKPGQRSK 119
MN ++ KP+ + + K +RS+
Sbjct: 441 MNQRMVNGKPLYVALAQRKDVRRSQ 465
>gi|3287682|gb|AAC25510.1| Strong similarity to gb|M97657 poly(A)-binding protein (PABP5) from
A. thaliana [Arabidopsis thaliana]
Length = 655
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 78/290 (26%), Positives = 156/290 (53%), Gaps = 14/290 (4%)
Query: 24 SNKE-NNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVF 82
SN++ + ++ + + + NL+ S+DN+AL F FGT+ +VA + S+G+ + F
Sbjct: 124 SNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQF 183
Query: 83 NTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETV 142
A+ A ++NG L+ K V + ++ +R++ ++ V+VKNL + +
Sbjct: 184 EKEESAQAAIDKLNGMLMNDKQVFVGHF-IRRQERARDENTPTPRFTN--VYVKNLPKEI 240
Query: 143 DEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTF 202
E+EL+ F KFG I ++RD++G S+ FGF+ F +AA A+ +MNG + + +
Sbjct: 241 GEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLY 300
Query: 203 VSLAEIVPGK-----KVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITS 257
V A+ + + F + + + ++ +++ NL ++++ + +E+F+ +G +TS
Sbjct: 301 VGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTS 360
Query: 258 SSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
S ++ + + GF+ + P+ A A+S MNG + KPL + L+ K
Sbjct: 361 SKVMLNPQGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALAQRK 410
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 76/263 (28%), Positives = 126/263 (47%), Gaps = 19/263 (7%)
Query: 29 NKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEA 88
++ + + L+ +L+P V L + FK + VRV R++N S G+A I F+ P +A
Sbjct: 43 DQTHPNSSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDA 102
Query: 89 KKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELK 148
+A +N + +P+ I P R K +F+KNL ++D + L
Sbjct: 103 YRAMEALNYTPLFDRPIRIMLSNRDPSTRLS---------GKGNIFIKNLDASIDNKALF 153
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEI 208
F FG I+ K+ D G+SKG+GF+QF ++A+ AI ++NG ++ FV
Sbjct: 154 ETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFV--GHF 211
Query: 209 VPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----- 263
+ ++ P R ++V NLP I E + F +FG I+S+ ++ D
Sbjct: 212 IRRQERARDENTPT---PRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNS 268
Query: 264 KHIGFIEFIMPKHATHAVSTMNG 286
+ GF+ F + A AV MNG
Sbjct: 269 RCFGFVNFECTEAAASAVEKMNG 291
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 108/207 (52%), Gaps = 9/207 (4%)
Query: 23 RSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVF 82
R+ EN + ++V NL + L F KFG + V R+++ SR F + F
Sbjct: 217 RARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNF 276
Query: 83 NTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDK--------VF 134
A A +MNG +G + + + K +R + + + +Q + ++ ++
Sbjct: 277 ECTEAAASAVEKMNGISLGDDVLYVGRAQ-KKSEREEELRRKFEQERINRFEKSQGANLY 335
Query: 135 VKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGR 194
+KNL ++VD+E+LK F ++GN+ K++ + G S+GFGF+ + + + A +A+ EMNG+
Sbjct: 336 LKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMNGK 395
Query: 195 MIQHNSTFVSLAEIVPGKKVFPKVKPP 221
MI +++LA+ ++ +++ P
Sbjct: 396 MIGRKPLYIALAQRKEDRRAHLQIRAP 422
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 81/178 (45%), Gaps = 16/178 (8%)
Query: 120 PVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFF 179
PV ++ + ++ +L V E L F N++ V++ RD+N +S G+ +I F
Sbjct: 38 PVVVADQTHPNSSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFS 97
Query: 180 SYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSN 239
+ A +A+ +N + + L+ P ++ + K IF+ NL ++
Sbjct: 98 NPNDAYRAMEALNYTPLFDRPIRIMLSNRDPSTRL-----------SGKGNIFIKNLDAS 146
Query: 240 INNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSK 292
I+N E F+ FGTI S + D K GF++F + A A+ +NG + K
Sbjct: 147 IDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDK 204
>gi|9930616|gb|AAG02117.1|AF293840_1 poly(A) binding protein [Arabidopsis thaliana]
Length = 660
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 78/290 (26%), Positives = 156/290 (53%), Gaps = 14/290 (4%)
Query: 24 SNKE-NNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVF 82
SN++ + ++ + + + NL+ S+DN+AL F FGT+ +VA + S+G+ + F
Sbjct: 124 SNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQF 183
Query: 83 NTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETV 142
A+ A ++NG L+ K V + ++ +R++ ++ V+VKNL + +
Sbjct: 184 EKEESAQAAIDKLNGMLMNDKQVFVGHF-IRRQERARDENTPTPRFTN--VYVKNLPKEI 240
Query: 143 DEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTF 202
E+EL+ F KFG I ++RD++G S+ FGF+ F +AA A+ +MNG + + +
Sbjct: 241 GEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLY 300
Query: 203 VSLAEIVPGK-----KVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITS 257
V A+ + + F + + + ++ +++ NL ++++ + +E+F+ +G +TS
Sbjct: 301 VGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTS 360
Query: 258 SSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
S ++ + + GF+ + P+ A A+S MNG + KPL + L+ K
Sbjct: 361 SKVMLNPQGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALAQRK 410
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 76/263 (28%), Positives = 126/263 (47%), Gaps = 19/263 (7%)
Query: 29 NKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEA 88
++ + + L+ +L+P V L + FK + VRV R++N S G+A I F+ P +A
Sbjct: 43 DQTHPNSSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDA 102
Query: 89 KKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELK 148
+A +N + +P+ I P R K +F+KNL ++D + L
Sbjct: 103 YRAMEALNYTPLFDRPIRIMLSNRDPSTRLS---------GKGNIFIKNLDASIDNKALF 153
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEI 208
F FG I+ K+ D G+SKG+GF+QF ++A+ AI ++NG ++ FV
Sbjct: 154 ETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFV--GHF 211
Query: 209 VPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----- 263
+ ++ P R ++V NLP I E + F +FG I+S+ ++ D
Sbjct: 212 IRRQERARDENTPT---PRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNS 268
Query: 264 KHIGFIEFIMPKHATHAVSTMNG 286
+ GF+ F + A AV MNG
Sbjct: 269 RCFGFVNFECTEAAASAVEKMNG 291
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 102/193 (52%), Gaps = 9/193 (4%)
Query: 23 RSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVF 82
R+ EN + ++V NL + L F KFG + V R+++ SR F + F
Sbjct: 217 RARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNF 276
Query: 83 NTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDK--------VF 134
A A +MNG +G + + + K +R + + + +Q + ++ ++
Sbjct: 277 ECTEAAASAVEKMNGISLGDDVLYVGRAQ-KKSEREEELRRKFEQERINRFEKSQGANLY 335
Query: 135 VKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGR 194
+KNL ++VD+E+LK F ++GN+ K++ + G S+GFGF+ + + + A +A+ EMNG+
Sbjct: 336 LKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMNGK 395
Query: 195 MIQHNSTFVSLAE 207
MI +++LA+
Sbjct: 396 MIGRKPLYIALAQ 408
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 81/178 (45%), Gaps = 16/178 (8%)
Query: 120 PVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFF 179
PV ++ + ++ +L V E L F N++ V++ RD+N +S G+ +I F
Sbjct: 38 PVVVADQTHPNSSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFS 97
Query: 180 SYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSN 239
+ A +A+ +N + + L+ P ++ + K IF+ NL ++
Sbjct: 98 NPNDAYRAMEALNYTPLFDRPIRIMLSNRDPSTRL-----------SGKGNIFIKNLDAS 146
Query: 240 INNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSK 292
I+N E F+ FGTI S + D K GF++F + A A+ +NG + K
Sbjct: 147 IDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDK 204
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 48/82 (58%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L++ NL+ SVD++ L F ++G + +V N SRGF + ++ P EA +A EMN
Sbjct: 334 LYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMN 393
Query: 97 GHLIGSKPVIITFVELKPGQRS 118
G +IG KP+ I + K +R+
Sbjct: 394 GKMIGRKPLYIALAQRKEDRRA 415
>gi|357164563|ref|XP_003580095.1| PREDICTED: polyadenylate-binding protein 2-like [Brachypodium
distachyon]
Length = 661
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 83/285 (29%), Positives = 138/285 (48%), Gaps = 33/285 (11%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ ++DN+ L + F FG + +VA + +S+GF + + A+ A +N
Sbjct: 127 IFIKNLDKTIDNKTLHDTFSAFGAILSCKVATDDMGQSKGFGFVQYEKEEFAQSAMKSLN 186
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDK---------VFVKNLVETVDEEEL 147
G LI KPV VGP ++ ++D VFVKNL E+ +E+L
Sbjct: 187 GMLINDKPVY--------------VGPFLRKQERDNSFDKARFNNVFVKNLSESTTKEDL 232
Query: 148 KSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
F ++GNI ++ +GKS+ FGFI F S A +A+ E+NG+ I + A+
Sbjct: 233 VKIFSEYGNITSAVVMVGTDGKSRCFGFINFESPDDAVRAVEELNGKKINDKEWYCGRAQ 292
Query: 208 I-----VPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
+ K+ F + + +++ NL I++ + ELF+ FG ITS ++
Sbjct: 293 KKSEREMDLKRRFEQSMKDAADKYQGQNLYLKNLDDGISDDQLRELFSTFGKITSCKVMR 352
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
D K GF+ F + A+ A++ MNG + KPL V + K
Sbjct: 353 DQNGVSKGSGFVAFSTREEASQAITEMNGKMLSGKPLYVAFAQRK 397
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 76/256 (29%), Positives = 126/256 (49%), Gaps = 22/256 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDE-SRGFAIIVFNTPAEAKKARVEM 95
L+V +LE SV + L F + G + VRV R+ N S G+A + F+ P +A +A +
Sbjct: 39 LYVGDLEASVTDSQLYELFSQAGQVVSVRVCRDVNSRRSLGYAYVNFSNPMDAARALEML 98
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N + +KP+ + + P R + +F+KNL +T+D + L F FG
Sbjct: 99 NFVPLNNKPIRVMYSNRDPSSR---------RSGSANIFIKNLDKTIDNKTLHDTFSAFG 149
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
I+ K+ D+ G+SKGFGF+Q+ + A+ A+ +NG +I +V G +
Sbjct: 150 AILSCKVATDDMGQSKGFGFVQYEKEEFAQSAMKSLNGMLINDKPVYV-------GPFLR 202
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLV-----SDKHIGFIE 270
+ + AR N +FV NL + + ++F+ +G ITS+ ++ + GFI
Sbjct: 203 KQERDNSFDKARFNNVFVKNLSESTTKEDLVKIFSEYGNITSAVVMVGTDGKSRCFGFIN 262
Query: 271 FIMPKHATHAVSTMNG 286
F P A AV +NG
Sbjct: 263 FESPDDAVRAVEELNG 278
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 92/180 (51%), Gaps = 7/180 (3%)
Query: 35 NELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVE 94
N + V NL S + L+ F ++G + V + +SR F I F +P +A +A E
Sbjct: 216 NNVFVKNLSESTTKEDLVKIFSEYGNITSAVVMVGTDGKSRCFGFINFESPDDAVRAVEE 275
Query: 95 MNGHLIGSKPVIITFVELKPGQR-------SKPVGPEEKQYKKDKVFVKNLVETVDEEEL 147
+NG I K + K + + + +Y+ +++KNL + + +++L
Sbjct: 276 LNGKKINDKEWYCGRAQKKSEREMDLKRRFEQSMKDAADKYQGQNLYLKNLDDGISDDQL 335
Query: 148 KSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
+ F FG I K++RD+NG SKG GF+ F + + A +AI EMNG+M+ +V+ A+
Sbjct: 336 RELFSTFGKITSCKVMRDQNGVSKGSGFVAFSTREEASQAITEMNGKMLSGKPLYVAFAQ 395
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 49/91 (53%)
Query: 23 RSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVF 82
+S K+ Y+ L++ NL+ + + L F FG + +V R++N S+G + F
Sbjct: 307 QSMKDAADKYQGQNLYLKNLDDGISDDQLRELFSTFGKITSCKVMRDQNGVSKGSGFVAF 366
Query: 83 NTPAEAKKARVEMNGHLIGSKPVIITFVELK 113
+T EA +A EMNG ++ KP+ + F + K
Sbjct: 367 STREEASQAITEMNGKMLSGKPLYVAFAQRK 397
Score = 41.6 bits (96), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
Query: 224 QPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIG--FIEFIMPKHA 277
QP ++V +L +++ +S+ ELF++ G + S + D + +G ++ F P A
Sbjct: 32 QPLPTTSLYVGDLEASVTDSQLYELFSQAGQVVSVRVCRDVNSRRSLGYAYVNFSNPMDA 91
Query: 278 THAVSTMNGHVFKSKPLKVTLSGTKP 303
A+ +N +KP++V S P
Sbjct: 92 ARALEMLNFVPLNNKPIRVMYSNRDP 117
>gi|15219945|ref|NP_173690.1| Polyadenylate-binding protein 3 [Arabidopsis thaliana]
gi|12643628|sp|O64380.1|PABP3_ARATH RecName: Full=Polyadenylate-binding protein 3; Short=PABP-3;
Short=Poly(A)-binding protein 3
gi|2505869|emb|CAA72907.1| polyA binding protein PAB3 [Arabidopsis thaliana]
gi|15450820|gb|AAK96681.1| Strong similarity to poly(A)-binding protein (PABP5) [Arabidopsis
thaliana]
gi|332192163|gb|AEE30284.1| Polyadenylate-binding protein 3 [Arabidopsis thaliana]
Length = 660
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 78/290 (26%), Positives = 156/290 (53%), Gaps = 14/290 (4%)
Query: 24 SNKE-NNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVF 82
SN++ + ++ + + + NL+ S+DN+AL F FGT+ +VA + S+G+ + F
Sbjct: 124 SNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQF 183
Query: 83 NTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETV 142
A+ A ++NG L+ K V + ++ +R++ ++ V+VKNL + +
Sbjct: 184 EKEESAQAAIDKLNGMLMNDKQVFVGHF-IRRQERARDENTPTPRFTN--VYVKNLPKEI 240
Query: 143 DEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTF 202
E+EL+ F KFG I ++RD++G S+ FGF+ F +AA A+ +MNG + + +
Sbjct: 241 GEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLY 300
Query: 203 VSLAEIVPGK-----KVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITS 257
V A+ + + F + + + ++ +++ NL ++++ + +E+F+ +G +TS
Sbjct: 301 VGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTS 360
Query: 258 SSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
S ++ + + GF+ + P+ A A+S MNG + KPL + L+ K
Sbjct: 361 SKVMLNPQGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALAQRK 410
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 76/263 (28%), Positives = 126/263 (47%), Gaps = 19/263 (7%)
Query: 29 NKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEA 88
++ + + L+ +L+P V L + FK + VRV R++N S G+A I F+ P +A
Sbjct: 43 DQTHPNSSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDA 102
Query: 89 KKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELK 148
+A +N + +P+ I P R K +F+KNL ++D + L
Sbjct: 103 YRAMEALNYTPLFDRPIRIMLSNRDPSTRLS---------GKGNIFIKNLDASIDNKALF 153
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEI 208
F FG I+ K+ D G+SKG+GF+QF ++A+ AI ++NG ++ FV
Sbjct: 154 ETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFV--GHF 211
Query: 209 VPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----- 263
+ ++ P R ++V NLP I E + F +FG I+S+ ++ D
Sbjct: 212 IRRQERARDENTPT---PRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNS 268
Query: 264 KHIGFIEFIMPKHATHAVSTMNG 286
+ GF+ F + A AV MNG
Sbjct: 269 RCFGFVNFECTEAAASAVEKMNG 291
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 102/193 (52%), Gaps = 9/193 (4%)
Query: 23 RSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVF 82
R+ EN + ++V NL + L F KFG + V R+++ SR F + F
Sbjct: 217 RARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNF 276
Query: 83 NTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDK--------VF 134
A A +MNG +G + + + K +R + + + +Q + ++ ++
Sbjct: 277 ECTEAAASAVEKMNGISLGDDVLYVGRAQ-KKSEREEELRRKFEQERINRFEKSQGANLY 335
Query: 135 VKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGR 194
+KNL ++VD+E+LK F ++GN+ K++ + G S+GFGF+ + + + A +A+ EMNG+
Sbjct: 336 LKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMNGK 395
Query: 195 MIQHNSTFVSLAE 207
MI +++LA+
Sbjct: 396 MIGRKPLYIALAQ 408
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 81/178 (45%), Gaps = 16/178 (8%)
Query: 120 PVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFF 179
PV ++ + ++ +L V E L F N++ V++ RD+N +S G+ +I F
Sbjct: 38 PVVVADQTHPNSSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFS 97
Query: 180 SYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSN 239
+ A +A+ +N + + L+ P ++ + K IF+ NL ++
Sbjct: 98 NPNDAYRAMEALNYTPLFDRPIRIMLSNRDPSTRL-----------SGKGNIFIKNLDAS 146
Query: 240 INNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSK 292
I+N E F+ FGTI S + D K GF++F + A A+ +NG + K
Sbjct: 147 IDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDK 204
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 48/82 (58%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L++ NL+ SVD++ L F ++G + +V N SRGF + ++ P EA +A EMN
Sbjct: 334 LYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMN 393
Query: 97 GHLIGSKPVIITFVELKPGQRS 118
G +IG KP+ I + K +R+
Sbjct: 394 GKMIGRKPLYIALAQRKEDRRA 415
>gi|349803919|gb|AEQ17432.1| putative poly binding cytoplasmic 1 [Hymenochirus curtipes]
Length = 590
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 85/279 (30%), Positives = 133/279 (47%), Gaps = 37/279 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KPV I + + P R VG +F+KNL +++D + L
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVG---------NIFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+GF+ F + +AAE+AI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N ++++ +E+F ++G S +++
Sbjct: 178 EREAELGARAKEF-------------TNVYIKNFGEDMDDERLKEMFGKYGPALSVKVMT 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
D K GF+ F + A AV MNG K + V
Sbjct: 225 DDSGKSKGFGFVSFERHEDAQKAVDDMNGKDMNGKAIYV 263
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 83/276 (30%), Positives = 148/276 (53%), Gaps = 22/276 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK + W + D R + N + + NL+ S+DN+AL + F FG +
Sbjct: 78 KGKPVRIMWSQ---RDPSLRKSGVGN-------IFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V ++N S+G+ + F T A++A +MNG L+ + V + + + +R +G
Sbjct: 128 CKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSR-KEREAELGA 185
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
K++ V++KN E +D+E LK F K+G + VK++ D++GKSKGFGF+ F ++
Sbjct: 186 RAKEFTN--VYIKNFGEDMDDERLKEMFGKYGPALSVKVMTDDSGKSKGFGFVSFERHED 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAEIVPG----KKVFPKVKPPLLQPARKNKIFVANLPSN 239
A+KA+ +MNG+ + + +V A+ V K+ F ++K + + ++V NL
Sbjct: 244 AQKAVDDMNGKDMNGKAIYVGRAKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDG 303
Query: 240 INNSEFEELFARFGTITSSSLVSD----KHIGFIEF 271
I++ + F+ FGTITS+ ++ + K GF+ F
Sbjct: 304 IDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCF 339
>gi|355784464|gb|EHH65315.1| Polyadenylate-binding protein 1-like protein [Macaca fascicularis]
Length = 635
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 91/320 (28%), Positives = 162/320 (50%), Gaps = 38/320 (11%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KG+ + W + D G R + N + + NLE S+DN+AL + F FG +
Sbjct: 90 KGQPIRIMWSQ---RDPGLRKSGVGN-------IFIKNLEDSIDNKALYDTFSTFGNILS 139
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V +++ SRGF + F T A++A MNG L+ + V + + + +R +G
Sbjct: 140 CKVVCDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSR-REREAELGA 197
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
++ ++VKNL VDE+ L+ F +FG ++ VK++RD +G S+ FGF+ F ++
Sbjct: 198 RALEFTN--IYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEE 255
Query: 184 AEKAIIEMNGRMIQHNSTFVSLA--------EIVPGKKVFPKVKPPLLQPARKNKIFVAN 235
A+KA++ MNG+ + + A E+ K+ F ++K L+ + ++V N
Sbjct: 256 AQKAVVHMNGKEVSGRLLYAGRAQKRVERQNEL---KRRFEQMKQDRLRRYQGVNLYVKN 312
Query: 236 LPSNINNSEFEELFARFGTITSSSLVSDKH--IGFIEFI-----------MPKHATHAVS 282
L +I++ + + F+ +G ITS+ V + G + + + + AT AV+
Sbjct: 313 LDDSIDDDKLRKEFSPYGVITSAKGVGAGYPFWGSADPVGTCSPSAALSGLKEEATKAVT 372
Query: 283 TMNGHVFKSKPLKVTLSGTK 302
MNG + +KPL V L+ K
Sbjct: 373 EMNGRIVGTKPLYVALAQRK 392
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 84/281 (29%), Positives = 134/281 (47%), Gaps = 49/281 (17%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARN------KNDESRGFAIIVFNTP 85
Y L+V +L P V L +F G + +RV R+ S G+A I F P
Sbjct: 8 YPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRFLPTRRSLGYAYINFQQP 67
Query: 86 AE-------AKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNL 138
A+ A++A MN ++ +P+ I + + PG R VG +F+KNL
Sbjct: 68 ADGEEQAQRAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVG---------NIFIKNL 118
Query: 139 VETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQH 198
+++D + L F FGNI+ K+V DE+G S+GFGF+ F +++AA++AI MNG ++
Sbjct: 119 EDSIDNKALYDTFSTFGNILSCKVVCDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLND 177
Query: 199 NSTFVSL--------AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFA 250
FV AE+ G + I+V NLP +++ ++LF+
Sbjct: 178 RKVFVGHFKSRREREAEL--GARAL-----------EFTNIYVKNLPVDVDEQGLQDLFS 224
Query: 251 RFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNG 286
+FG + S ++ D + GF+ F + A AV MNG
Sbjct: 225 QFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNG 265
>gi|297845300|ref|XP_002890531.1| PAB3 binding protein 3 [Arabidopsis lyrata subsp. lyrata]
gi|297336373|gb|EFH66790.1| PAB3 binding protein 3 [Arabidopsis lyrata subsp. lyrata]
Length = 659
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 78/290 (26%), Positives = 156/290 (53%), Gaps = 14/290 (4%)
Query: 24 SNKE-NNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVF 82
SN++ + ++ + + + NL+ S+DN+AL F FGT+ +VA + S+G+ + F
Sbjct: 124 SNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQF 183
Query: 83 NTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETV 142
A+ A ++NG L+ K V + ++ +R++ ++ V+VKNL + +
Sbjct: 184 EKEESAQAAIDKLNGMLMNDKQVFVGHF-IRRQERARDENTPTPRFTN--VYVKNLPKEI 240
Query: 143 DEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTF 202
E+EL+ F KFG I ++RD++G S+ FGF+ F +AA A+ +MNG + + +
Sbjct: 241 GEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLY 300
Query: 203 VSLAEIVPGK-----KVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITS 257
V A+ + + F + + + ++ +++ NL ++++ + +E+F+ +G +TS
Sbjct: 301 VGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTS 360
Query: 258 SSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
S ++ + + GF+ + P+ A A+S MNG + KPL + L+ K
Sbjct: 361 SKVMLNPQGLSRGFGFVAYSNPEEALRALSEMNGKMIGKKPLYIALAQRK 410
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 76/263 (28%), Positives = 126/263 (47%), Gaps = 19/263 (7%)
Query: 29 NKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEA 88
++ + + L+ +L+P V L + FK + VRV R++N S G+A I F+ P +A
Sbjct: 43 DQTHPNSSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDA 102
Query: 89 KKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELK 148
+A +N + +P+ I P R K +F+KNL ++D + L
Sbjct: 103 YRAMEALNYTPLFERPIRIMLSNRDPSTRLS---------GKGNIFIKNLDASIDNKALF 153
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEI 208
F FG I+ K+ D G+SKG+GF+QF ++A+ AI ++NG ++ FV
Sbjct: 154 ETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFV--GHF 211
Query: 209 VPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----- 263
+ ++ P R ++V NLP I E + F +FG I+S+ ++ D
Sbjct: 212 IRRQERARDENTPT---PRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNS 268
Query: 264 KHIGFIEFIMPKHATHAVSTMNG 286
+ GF+ F + A AV MNG
Sbjct: 269 RCFGFVNFECTEAAASAVEKMNG 291
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 102/193 (52%), Gaps = 9/193 (4%)
Query: 23 RSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVF 82
R+ EN + ++V NL + L F KFG + V R+++ SR F + F
Sbjct: 217 RARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNF 276
Query: 83 NTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDK--------VF 134
A A +MNG +G + + + K +R + + + +Q + ++ ++
Sbjct: 277 ECTEAAASAVEKMNGISLGDDVLYVGRAQ-KKSEREEELRRKFEQERINRFEKSQGANLY 335
Query: 135 VKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGR 194
+KNL ++VD+E+LK F ++GN+ K++ + G S+GFGF+ + + + A +A+ EMNG+
Sbjct: 336 LKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGLSRGFGFVAYSNPEEALRALSEMNGK 395
Query: 195 MIQHNSTFVSLAE 207
MI +++LA+
Sbjct: 396 MIGKKPLYIALAQ 408
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 80/178 (44%), Gaps = 16/178 (8%)
Query: 120 PVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFF 179
P ++ + ++ +L V E L F N++ V++ RD+N +S G+ +I F
Sbjct: 38 PAAVADQTHPNSSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFS 97
Query: 180 SYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSN 239
+ A +A+ +N + + L+ P ++ + K IF+ NL ++
Sbjct: 98 NPNDAYRAMEALNYTPLFERPIRIMLSNRDPSTRL-----------SGKGNIFIKNLDAS 146
Query: 240 INNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSK 292
I+N E F+ FGTI S + D K GF++F + A A+ +NG + K
Sbjct: 147 IDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDK 204
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 48/82 (58%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L++ NL+ SVD++ L F ++G + +V N SRGF + ++ P EA +A EMN
Sbjct: 334 LYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGLSRGFGFVAYSNPEEALRALSEMN 393
Query: 97 GHLIGSKPVIITFVELKPGQRS 118
G +IG KP+ I + K +R+
Sbjct: 394 GKMIGKKPLYIALAQRKEDRRA 415
>gi|318087106|gb|ADV40145.1| putative apoptosis-promoting RNA-binding protein TIA-1/TIAR
[Latrodectus hesperus]
Length = 332
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 76/253 (30%), Positives = 137/253 (54%), Gaps = 15/253 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S+DN+A+ + F FG + +VA ++ S+G+ + F T A A ++N
Sbjct: 83 VFIKNLDKSIDNKAMYDTFSAFGNILSCKVATDEESNSKGYGFVHFETEEAANNAIQKVN 142
Query: 97 GHLIGSKPVII-TFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
G L+ + V + FV +R K +G + +++ V++KN + +D+E+L+ F K+G
Sbjct: 143 GMLLNGRKVFVGKFV--PRSEREKQLGQKARRFMN--VYIKNFGDDLDDEKLREMFEKYG 198
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVP 210
I K++ DE GK KGFGF+ F + AEKA+ ++N + + +V A+
Sbjct: 199 KITSAKVMADETGKPKGFGFVSFEDPENAEKAVNDLNNKELNGKVLYVGRAQKKSERAAE 258
Query: 211 GKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KH 265
K+ F ++K + + ++V NL +I++ + F FGTITS+ +++D K
Sbjct: 259 LKRRFEQLKMDRINRYQGVNLYVKNLDDSIDDERLRKEFTPFGTITSAKVMTDSNGRSKG 318
Query: 266 IGFIEFIMPKHAT 278
GF+ F P+ AT
Sbjct: 319 FGFVCFSAPEEAT 331
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 75/253 (29%), Positives = 130/253 (51%), Gaps = 22/253 (8%)
Query: 51 LINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITF 109
L +F G + +RV R+ S G+A + F P +A++A MN ++ +P+ I +
Sbjct: 9 LFEKFSSAGPVLSIRVCRDLIARRSLGYAYVNFQQPVDAERALDTMNFDMVKGRPIRIMW 68
Query: 110 VELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGK 169
+ P R VG VF+KNL +++D + + F FGNI+ K+ DE
Sbjct: 69 SQRDPSLRKSGVG---------NVFIKNLDKSIDNKAMYDTFSAFGNILSCKVATDEESN 119
Query: 170 SKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARK- 228
SKG+GF+ F + +AA AI ++NG ++ FV + VP + + L Q AR+
Sbjct: 120 SKGYGFVHFETEEAANNAIQKVNGMLLNGRKVFV--GKFVPR----SEREKQLGQKARRF 173
Query: 229 NKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVST 283
+++ N ++++ + E+F ++G ITS+ +++D K GF+ F P++A AV+
Sbjct: 174 MNVYIKNFGDDLDDEKLREMFEKYGKITSAKVMADETGKPKGFGFVSFEDPENAEKAVND 233
Query: 284 MNGHVFKSKPLKV 296
+N K L V
Sbjct: 234 LNNKELNGKVLYV 246
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 85/158 (53%), Gaps = 9/158 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+++ N +D++ L F+K+G + +V ++ + +GF + F P A+KA ++N
Sbjct: 176 VYIKNFGDDLDDEKLREMFEKYGKITSAKVMADETGKPKGFGFVSFEDPENAEKAVNDLN 235
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKV--------FVKNLVETVDEEELK 148
+ K + + + K +R+ + +Q K D++ +VKNL +++D+E L+
Sbjct: 236 NKELNGKVLYVGRAQ-KKSERAAELKRRFEQLKMDRINRYQGVNLYVKNLDDSIDDERLR 294
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEK 186
F FG I K++ D NG+SKGFGF+ F + + A K
Sbjct: 295 KEFTPFGTITSAKVMTDSNGRSKGFGFVCFSAPEEATK 332
>gi|405973173|gb|EKC37903.1| Polyadenylate-binding protein 4 [Crassostrea gigas]
Length = 465
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 87/275 (31%), Positives = 139/275 (50%), Gaps = 26/275 (9%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L P V L +F G + VRV R+ S G+A + F+ PA+A++A M
Sbjct: 12 LYVRDLHPDVTEDMLFKKFSTAGPVLSVRVCRDMITRRSLGYAYVNFHQPADAERALDTM 71
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N +I +P+ IT+ + P R VG VF+K L +++D + L F FG
Sbjct: 72 NFDIIKGRPIRITWYQRDPSLRKSGVG---------NVFIKKLDKSIDNKALYDTFSAFG 122
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI KIV DE+G S+G+GF+ F + +AA AI ++NG ++ FV G+ +
Sbjct: 123 NISSCKIVCDEHG-SRGYGFVHFETDEAARIAIEKVNGMLLNGKKVFV-------GRFMS 174
Query: 216 PKVKPPLLQPARK--NKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIG 267
+ + +L + N ++V NL ++ + E+F +G I S+ ++ D K G
Sbjct: 175 RRERLEVLDLGMRKFNNVYVKNLSEETDDEKLREIFELYGKIISAKVMIDDSSRKSKQFG 234
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F+ F P+ A AV +NG+ K L V + TK
Sbjct: 235 FVSFENPEAAKKAVEALNGNDNAGKILYVGRAQTK 269
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 88/276 (31%), Positives = 150/276 (54%), Gaps = 14/276 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + L+ S+DN+AL + F FG + ++ +++ SRG+ + F T A+ A ++N
Sbjct: 100 VFIKKLDKSIDNKALYDTFSAFGNISSCKIVCDEHG-SRGYGFVHFETDEAARIAIEKVN 158
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G L+ K V FV +R + + K + V+VKNL E D+E+L+ F +G
Sbjct: 159 GMLLNGKKV---FVGRFMSRRERLEVLDLGMRKFNNVYVKNLSEETDDEKLREIFELYGK 215
Query: 157 IIEVKIVRDENG-KSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
II K++ D++ KSK FGF+ F + +AA+KA+ +NG +V A+ ++
Sbjct: 216 IISAKVMIDDSSRKSKQFGFVSFENPEAAKKAVEALNGNDNAGKILYVGRAQTKIERQAE 275
Query: 216 PKVKPPLLQPARKNK-----IFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHI 266
K K ++ R N+ +FV NL NI++ + FA+FGTITS+ ++++ K
Sbjct: 276 LKEKFERIRKERINRYQGVNLFVKNLDDNIDDKRLRKEFAQFGTITSAKVMTENGRSKGF 335
Query: 267 GFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ F P+ AT A+ MN + +++PL V L+ K
Sbjct: 336 GFVYFSSPEEATKAIVEMNEKIIEARPLYVALAQRK 371
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 105/191 (54%), Gaps = 9/191 (4%)
Query: 33 KENELHVNNLEPSVDNQALINEFKKFGTLRDVRVA-RNKNDESRGFAIIVFNTPAEAKKA 91
K N ++V NL D++ L F+ +G + +V + + +S+ F + F P AKKA
Sbjct: 188 KFNNVYVKNLSEETDDEKLREIFELYGKIISAKVMIDDSSRKSKQFGFVSFENPEAAKKA 247
Query: 92 RVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEK-------QYKKDKVFVKNLVETVDE 144
+NG+ K + + + K ++++ E+ +Y+ +FVKNL + +D+
Sbjct: 248 VEALNGNDNAGKILYVGRAQTKIERQAELKEKFERIRKERINRYQGVNLFVKNLDDNIDD 307
Query: 145 EELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVS 204
+ L+ F +FG I K++ ENG+SKGFGF+ F S + A KAI+EMN ++I+ +V+
Sbjct: 308 KRLRKEFAQFGTITSAKVM-TENGRSKGFGFVYFSSPEEATKAIVEMNEKIIEARPLYVA 366
Query: 205 LAEIVPGKKVF 215
LA+ +K +
Sbjct: 367 LAQRKEDRKAY 377
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 56/96 (58%), Gaps = 1/96 (1%)
Query: 23 RSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVF 82
R KE Y+ L V NL+ ++D++ L EF +FGT+ +V +N S+GF + F
Sbjct: 282 RIRKERINRYQGVNLFVKNLDDNIDDKRLRKEFAQFGTITSAKVM-TENGRSKGFGFVYF 340
Query: 83 NTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRS 118
++P EA KA VEMN +I ++P+ + + K +++
Sbjct: 341 SSPEEATKAIVEMNEKIIEARPLYVALAQRKEDRKA 376
>gi|222629159|gb|EEE61291.1| hypothetical protein OsJ_15377 [Oryza sativa Japonica Group]
Length = 613
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 83/276 (30%), Positives = 141/276 (51%), Gaps = 15/276 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ ++D++ L + F FG + +VA ++ +S+GF + ++ A+ A +N
Sbjct: 128 IFIKNLDKAIDHKTLHDTFSAFGNILSCKVATDEMGQSKGFGFVQYDKGEAAQSAIKSLN 187
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G LI KPV + L+ +R V + K + VFVKNL E+ +E+L F +GN
Sbjct: 188 GMLINDKPVYVGPF-LRKQERENSV----DKTKFNNVFVKNLSESTTKEDLVKIFGAYGN 242
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEI-----VPG 211
I I+ +GKS+ FGFI F S A +A+ E+NG+ I +V A+ +
Sbjct: 243 ITSAVIMVGMDGKSRCFGFINFKSPDDAARAVEELNGKKINDKEWYVGRAQKKSEREIEL 302
Query: 212 KKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHI 266
K+ F + + +++ NL +I + + ELF+ +G ITS ++ D K
Sbjct: 303 KRRFEQSMKDAADKYQGLNLYMKNLDDSIGDDQLCELFSNYGKITSCKIMRDANGVSKGS 362
Query: 267 GFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ F + A+ A++ MNG + KPL V + K
Sbjct: 363 GFVAFSTREEASQALTEMNGKMISGKPLYVAFAQRK 398
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 77/256 (30%), Positives = 124/256 (48%), Gaps = 23/256 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKKARVEM 95
L+V +LE SV + L EF+ G + VRV R+ + S G + FN P +A +A +
Sbjct: 41 LYVGDLEASVTDSQLY-EFQPGGQVMSVRVCRDIRLGRSFGKPYVNFNNPVDAARALELL 99
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N + KP+ + + P R + +F+KNL + +D + L F FG
Sbjct: 100 NFAPLNGKPIRVMYSNRDPSSR---------RSGSANIFIKNLDKAIDHKTLHDTFSAFG 150
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ DE G+SKGFGF+Q+ +AA+ AI +NG +I +V G +
Sbjct: 151 NILSCKVATDEMGQSKGFGFVQYDKGEAAQSAIKSLNGMLINDKPVYV-------GPFLR 203
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLV-----SDKHIGFIE 270
+ + + + N +FV NL + + ++F +G ITS+ ++ + GFI
Sbjct: 204 KQERENSVDKTKFNNVFVKNLSESTTKEDLVKIFGAYGNITSAVIMVGMDGKSRCFGFIN 263
Query: 271 FIMPKHATHAVSTMNG 286
F P A AV +NG
Sbjct: 264 FKSPDDAARAVEELNG 279
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 97/195 (49%), Gaps = 11/195 (5%)
Query: 23 RSNKENNKVYKE--NELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAII 80
R + N V K N + V NL S + L+ F +G + + + +SR F I
Sbjct: 203 RKQERENSVDKTKFNNVFVKNLSESTTKEDLVKIFGAYGNITSAVIMVGMDGKSRCFGFI 262
Query: 81 VFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDK-------- 132
F +P +A +A E+NG I K + + K +R + +Q KD
Sbjct: 263 NFKSPDDAARAVEELNGKKINDKEWYVGRAQ-KKSEREIELKRRFEQSMKDAADKYQGLN 321
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMN 192
+++KNL +++ +++L F +G I KI+RD NG SKG GF+ F + + A +A+ EMN
Sbjct: 322 LYMKNLDDSIGDDQLCELFSNYGKITSCKIMRDANGVSKGSGFVAFSTREEASQALTEMN 381
Query: 193 GRMIQHNSTFVSLAE 207
G+MI +V+ A+
Sbjct: 382 GKMISGKPLYVAFAQ 396
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 49/91 (53%)
Query: 23 RSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVF 82
+S K+ Y+ L++ NL+ S+ + L F +G + ++ R+ N S+G + F
Sbjct: 308 QSMKDAADKYQGLNLYMKNLDDSIGDDQLCELFSNYGKITSCKIMRDANGVSKGSGFVAF 367
Query: 83 NTPAEAKKARVEMNGHLIGSKPVIITFVELK 113
+T EA +A EMNG +I KP+ + F + K
Sbjct: 368 STREEASQALTEMNGKMISGKPLYVAFAQRK 398
>gi|326503608|dbj|BAJ86310.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 746
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 81/276 (29%), Positives = 136/276 (49%), Gaps = 15/276 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ ++DN+ L + F FG + +VA + +S+GF + + A+ A +N
Sbjct: 212 IFIKNLDKTIDNKTLHDTFSAFGAILSCKVAMDDIGQSKGFGFVQYEKEESAQSAMKSLN 271
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G LI KPV + P R + + K + VFVKNL E+ +E+L F ++G
Sbjct: 272 GMLINDKPVYVG-----PFLRKQERDNSSDKAKFNNVFVKNLSESTTKEDLIKVFSEYGT 326
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEI-----VPG 211
I ++ +GKS+ FGF+ F S A +A+ E+NG+ I +V A+ +
Sbjct: 327 ITSAVVMIGMDGKSRCFGFVNFESPDDAARAVEELNGKKINDKEWYVGRAQKKSEREMDL 386
Query: 212 KKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHI 266
K+ F + + +++ NL I + + ELF+ FG ITS ++ D K
Sbjct: 387 KRRFEQSMKDAADKYQGQNLYLKNLDDGITDDQLRELFSNFGKITSCKIMRDQNGVSKGS 446
Query: 267 GFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ F + A+ A++ MNG + KPL V + K
Sbjct: 447 GFVSFSTREEASQALTEMNGKMISGKPLYVAFAQRK 482
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 73/256 (28%), Positives = 128/256 (50%), Gaps = 22/256 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDE-SRGFAIIVFNTPAEAKKARVEM 95
L+V +LE +V + L F + G + VRV R+ N S G+A + ++ P +A +A +
Sbjct: 124 LYVGDLEANVTDSQLYELFSQAGQVVSVRVCRDVNSRRSLGYAYVNYSNPMDAARAMEAL 183
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N + +KP+ + + P R + +F+KNL +T+D + L F FG
Sbjct: 184 NFAPLNNKPIRVMYSNRDPSSR---------RSGSANIFIKNLDKTIDNKTLHDTFSAFG 234
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
I+ K+ D+ G+SKGFGF+Q+ ++A+ A+ +NG +I +V G +
Sbjct: 235 AILSCKVAMDDIGQSKGFGFVQYEKEESAQSAMKSLNGMLINDKPVYV-------GPFLR 287
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLV-----SDKHIGFIE 270
+ + A+ N +FV NL + + ++F+ +GTITS+ ++ + GF+
Sbjct: 288 KQERDNSSDKAKFNNVFVKNLSESTTKEDLIKVFSEYGTITSAVVMIGMDGKSRCFGFVN 347
Query: 271 FIMPKHATHAVSTMNG 286
F P A AV +NG
Sbjct: 348 FESPDDAARAVEELNG 363
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 95/182 (52%), Gaps = 7/182 (3%)
Query: 33 KENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKAR 92
K N + V NL S + LI F ++GT+ V + +SR F + F +P +A +A
Sbjct: 299 KFNNVFVKNLSESTTKEDLIKVFSEYGTITSAVVMIGMDGKSRCFGFVNFESPDDAARAV 358
Query: 93 VEMNGHLIGSKPVIITFVELKPGQR-------SKPVGPEEKQYKKDKVFVKNLVETVDEE 145
E+NG I K + + K + + + +Y+ +++KNL + + ++
Sbjct: 359 EELNGKKINDKEWYVGRAQKKSEREMDLKRRFEQSMKDAADKYQGQNLYLKNLDDGITDD 418
Query: 146 ELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL 205
+L+ F FG I KI+RD+NG SKG GF+ F + + A +A+ EMNG+MI +V+
Sbjct: 419 QLRELFSNFGKITSCKIMRDQNGVSKGSGFVSFSTREEASQALTEMNGKMISGKPLYVAF 478
Query: 206 AE 207
A+
Sbjct: 479 AQ 480
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 49/91 (53%)
Query: 23 RSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVF 82
+S K+ Y+ L++ NL+ + + L F FG + ++ R++N S+G + F
Sbjct: 392 QSMKDAADKYQGQNLYLKNLDDGITDDQLRELFSNFGKITSCKIMRDQNGVSKGSGFVSF 451
Query: 83 NTPAEAKKARVEMNGHLIGSKPVIITFVELK 113
+T EA +A EMNG +I KP+ + F + K
Sbjct: 452 STREEASQALTEMNGKMISGKPLYVAFAQRK 482
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
Query: 224 QPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIG--FIEFIMPKHA 277
QP ++V +L +N+ +S+ ELF++ G + S + D + +G ++ + P A
Sbjct: 117 QPLPTTSLYVGDLEANVTDSQLYELFSQAGQVVSVRVCRDVNSRRSLGYAYVNYSNPMDA 176
Query: 278 THAVSTMNGHVFKSKPLKVTLSGTKP 303
A+ +N +KP++V S P
Sbjct: 177 ARAMEALNFAPLNNKPIRVMYSNRDP 202
>gi|256271306|gb|EEU06376.1| Pab1p [Saccharomyces cerevisiae JAY291]
Length = 577
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 84/309 (27%), Positives = 150/309 (48%), Gaps = 23/309 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KG++ W + D R N + + NL P +DN+AL + F FG +
Sbjct: 105 KGRLCRIMWSQ---RDPSLRKKGSGN-------IFIKNLHPDIDNKALYDTFSVFGDILS 154
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
++A ++N +S+GF + F AK+A +NG L+ + + + L +R +
Sbjct: 155 SKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVA-PHLSRKERDSQL-- 211
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
EE + ++VKN+ +E+ + F KFG I+ + +D +GK KGFGF+ + ++
Sbjct: 212 EETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHED 271
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A KA+ +N + +V A+ + KK + + + + +FV NL
Sbjct: 272 AVKAVEALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDD 331
Query: 239 NINNSEFEELFARFGTITSSSLVS-----DKHIGFIEFIMPKHATHAVSTMNGHVFKSKP 293
++++ + EE FA +GTITS+ ++ K GF+ F P+ AT A++ N + KP
Sbjct: 332 SVDDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKP 391
Query: 294 LKVTLSGTK 302
L V ++ K
Sbjct: 392 LYVAIAQRK 400
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 85/268 (31%), Positives = 130/268 (48%), Gaps = 24/268 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +LEPSV L + F G++ +RV R+ S G+A + FN +KA ++
Sbjct: 40 LYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQL 99
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N I + I + + P R K G +F+KNL +D + L F FG
Sbjct: 100 NYTPIKGRLCRIMWSQRDPSLRKKGSG---------NIFIKNLHPDIDNKALYDTFSVFG 150
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
+I+ KI DENGKSKGFGF+ F AA++AI +NG ++ +V+ +
Sbjct: 151 DILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVA-------PHLS 203
Query: 216 PKVKPPLLQP--ARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGF 268
K + L+ A ++V N+ S + +F+ELFA+FG I S+SL D K GF
Sbjct: 204 RKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGF 263
Query: 269 IEFIMPKHATHAVSTMNGHVFKSKPLKV 296
+ + + A AV +N + L V
Sbjct: 264 VNYEKHEDAVKAVEALNDSELNGEKLYV 291
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 52/88 (59%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L V NL+ SVD++ L EF +GT+ +V R +N +S+GF + F+TP EA KA
Sbjct: 319 YQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKA 378
Query: 92 RVEMNGHLIGSKPVIITFVELKPGQRSK 119
E N ++ KP+ + + K +RS+
Sbjct: 379 ITEKNQQIVAGKPLYVAIAQRKDVRRSQ 406
>gi|452820609|gb|EME27649.1| poly(A) binding / translation initiation factor [Galdieria
sulphuraria]
Length = 784
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 80/275 (29%), Positives = 141/275 (51%), Gaps = 16/275 (5%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ ++DN+ L + F FG + +VA + S G+ + F P +A+ A ++NG
Sbjct: 172 IKNLDKAIDNKTLFDTFSVFGNILSCKVATDDEGNSLGYGFVHFENPEDAETAINKVNGM 231
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVET-VDEEELKSHFIKFGNI 157
L+ K V + + + + + + E+ + V+ KNL+ + EE+++ F +G I
Sbjct: 232 LLNDKQVYVGYFKSRQEREAS-----EETHIFTNVYTKNLIPSMCTEEKIRELFSLYGEI 286
Query: 158 IEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPK 217
V + DEN KGF F+ F + A KA+ E+NGR + S +V A+ ++ +
Sbjct: 287 TSVYVPVDENEVPKGFAFVNFAKPECAAKAVEELNGRDFEGKSLYVGRAQKKAEREAELR 346
Query: 218 VKPP-----LLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIG 267
K +L+ + ++V NLP +++ + F+ FGT+TS ++ D + G
Sbjct: 347 RKAENKRAEILKKYQGVNLYVRNLPDDMDEEGLRKEFSNFGTLTSCRVMRDDKGVSRGFG 406
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F+ F P+ AT AV+ MNG + KPL V L+ K
Sbjct: 407 FVCFSTPEEATKAVTEMNGKMMGKKPLYVCLAQRK 441
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 78/276 (28%), Positives = 122/276 (44%), Gaps = 38/276 (13%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKKARVEM 95
++V +L P V+ L F G + VRV R+ S G+A + F++ +A++A M
Sbjct: 79 IYVGDLHPEVNEANLFEVFSAIGPVASVRVCRDIVTRRSLGYAYVNFHSMDDAERALETM 138
Query: 96 NGHLIGS---KPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFI 152
N + KP+ + + P R G VF+KNL + +D + L F
Sbjct: 139 NFYACPQTRDKPMRLMWKNRDPTIRKSGAG---------NVFIKNLDKAIDNKTLFDTFS 189
Query: 153 KFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL------A 206
FGNI+ K+ D+ G S G+GF+ F + + AE AI ++NG ++ +V
Sbjct: 190 VFGNILSCKVATDDEGNSLGYGFVHFENPEDAETAINKVNGMLLNDKQVYVGYFKSRQER 249
Query: 207 EIVPGKKVFPKVKPPLLQPARKNKIFVANL-PSNINNSEFEELFARFGTITSSSLVSD-- 263
E +F ++ NL PS + ELF+ +G ITS + D
Sbjct: 250 EASEETHIF-------------TNVYTKNLIPSMCTEEKIRELFSLYGEITSVYVPVDEN 296
Query: 264 ---KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
K F+ F P+ A AV +NG F+ K L V
Sbjct: 297 EVPKGFAFVNFAKPECAAKAVEELNGRDFEGKSLYV 332
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 97/179 (54%), Gaps = 8/179 (4%)
Query: 37 LHVNNLEPSVDNQALINE-FKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEM 95
++ NL PS+ + I E F +G + V V ++N+ +GFA + F P A KA E+
Sbjct: 261 VYTKNLIPSMCTEEKIRELFSLYGEITSVYVPVDENEVPKGFAFVNFAKPECAAKAVEEL 320
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEE-------KQYKKDKVFVKNLVETVDEEELK 148
NG K + + + K + ++ E K+Y+ ++V+NL + +DEE L+
Sbjct: 321 NGRDFEGKSLYVGRAQKKAEREAELRRKAENKRAEILKKYQGVNLYVRNLPDDMDEEGLR 380
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
F FG + +++RD+ G S+GFGF+ F + + A KA+ EMNG+M+ +V LA+
Sbjct: 381 KEFSNFGTLTSCRVMRDDKGVSRGFGFVCFSTPEEATKAVTEMNGKMMGKKPLYVCLAQ 439
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 48/84 (57%)
Query: 30 KVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAK 89
K Y+ L+V NL +D + L EF FGTL RV R+ SRGF + F+TP EA
Sbjct: 358 KKYQGVNLYVRNLPDDMDEEGLRKEFSNFGTLTSCRVMRDDKGVSRGFGFVCFSTPEEAT 417
Query: 90 KARVEMNGHLIGSKPVIITFVELK 113
KA EMNG ++G KP+ + + K
Sbjct: 418 KAVTEMNGKMMGKKPLYVCLAQRK 441
>gi|356537017|ref|XP_003537028.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Glycine max]
Length = 502
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 92/310 (29%), Positives = 153/310 (49%), Gaps = 29/310 (9%)
Query: 5 GKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDV 64
GK++ W D AR + N + V NL S+DN L + F+K+G +
Sbjct: 80 GKVIRVMWSH---PDPSARKSGRGN-------VFVKNLAGSIDNAGLHDLFQKYGNILSS 129
Query: 65 RVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIIT-FVELKPGQRSKPVGP 123
+V + + +S+G+ + F + A A ++NG +G K + + FV + G R P G
Sbjct: 130 KVVMSGDGKSKGYGFVQFESEESANNAIEKLNGSTVGDKQIYVGKFV--RKGDRILP-GY 186
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
+ K +++KNL + E L+ F FG II + I +D+NG SKGF F+ + +
Sbjct: 187 DAKY---TNLYIKNLDSDITEALLQEKFSSFGKIISLVISKDDNGLSKGFAFVNYENPDD 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLA------EIVPGKKVFPKVKPPLLQPARKNKIFVANLP 237
A KA+ MNG + +V+ A E + ++ K K +L+ N ++V N+
Sbjct: 244 ARKAMEAMNGLKFGSKNLYVARAQKKAEREQILHRQFEEKRKEQILKYQASN-LYVKNID 302
Query: 238 SNINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSK 292
++ + E +LF+ GTITS ++ D K GF+ F P+ A AV + NG +F K
Sbjct: 303 DDVTDKELRDLFSSCGTITSVKVMRDDKGISKGFGFVCFSNPEEANKAVRSFNGCMFHRK 362
Query: 293 PLKVTLSGTK 302
PL + ++ K
Sbjct: 363 PLYIAIAQRK 372
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 79/267 (29%), Positives = 125/267 (46%), Gaps = 22/267 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L V + L F +F T+ VRV R++ +S + + F + +A +A
Sbjct: 14 LYVGDLHSEVVDHHLFEAFAEFKTMDSVRVCRDRVTMKSLCYGYVNFKSQQDAIRAMKLK 73
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N + K + + + P R G VFVKNL ++D L F K+G
Sbjct: 74 NNSYLNGKVIRVMWSHPDPSARKSGRG---------NVFVKNLAGSIDNAGLHDLFQKYG 124
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+V +GKSKG+GF+QF S ++A AI ++NG + +V + G ++
Sbjct: 125 NILSSKVVMSGDGKSKGYGFVQFESEESANNAIEKLNGSTVGDKQIYVG-KFVRKGDRIL 183
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIE 270
P A+ +++ NL S+I + +E F+ FG I S + D K F+
Sbjct: 184 PGYD------AKYTNLYIKNLDSDITEALLQEKFSSFGKIISLVISKDDNGLSKGFAFVN 237
Query: 271 FIMPKHATHAVSTMNGHVFKSKPLKVT 297
+ P A A+ MNG F SK L V
Sbjct: 238 YENPDDARKAMEAMNGLKFGSKNLYVA 264
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 48/88 (54%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ + L+V N++ V ++ L + F GT+ V+V R+ S+GF + F+ P EA KA
Sbjct: 291 YQASNLYVKNIDDDVTDKELRDLFSSCGTITSVKVMRDDKGISKGFGFVCFSNPEEANKA 350
Query: 92 RVEMNGHLIGSKPVIITFVELKPGQRSK 119
NG + KP+ I + K ++++
Sbjct: 351 VRSFNGCMFHRKPLYIAIAQRKMDRKTQ 378
>gi|313232178|emb|CBY09289.1| unnamed protein product [Oikopleura dioica]
Length = 611
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 90/291 (30%), Positives = 148/291 (50%), Gaps = 24/291 (8%)
Query: 55 FKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKP 114
F FG + +V N ES+G+ + F T A KA +++G L+ K V + + +
Sbjct: 104 FSAFGNILSCKVNVNLAGESKGYGFVHFETEEAAVKAIEKLDGMLMNDKKVFVGRFKSR- 162
Query: 115 GQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFG 174
G+R + G KQ+ VF+KNL D+ +L F + G+++ V + DENGKS+ FG
Sbjct: 163 GERVREYGDRAKQFTN--VFIKNLPAEWDDAKLTEVFGEHGSVMSVALATDENGKSRQFG 220
Query: 175 FIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNK---- 230
F+ F +++ AEK + +++ + + FV A+ ++ KVK L+ R +
Sbjct: 221 FVSFETHECAEKVVEKLHDKEFEGKKIFVGRAQKKAERQAELKVKFEKLKHERNQRYQGV 280
Query: 231 -IFVANLPSNINNSEFEELFARFGTITSSSLVSD--------KHIGFIEFIMPKHATHAV 281
++V NL +I + E FA +G ITSS +++D K GF+ F + AT AV
Sbjct: 281 NLYVKNLDDSITDDILREHFAPYGNITSSKVMTDTDVEGTRSKGFGFVCFTSAEEATKAV 340
Query: 282 STMNGHVFKSKPLKVTLSGTKPGVSITNPTKAPKKPAYIDEVKNVIGIKVQ 332
+ MNG + SKPL V L+ K + KA + Y+ V G+++Q
Sbjct: 341 TEMNGRIIASKPLYVALAQRK------DERKAHLQQQYMQRV--TTGMRLQ 383
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Query: 27 ENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDE---SRGFAIIVFN 83
E N+ Y+ L+V NL+ S+ + L F +G + +V + + E S+GF + F
Sbjct: 272 ERNQRYQGVNLYVKNLDDSITDDILREHFAPYGNITSSKVMTDTDVEGTRSKGFGFVCFT 331
Query: 84 TPAEAKKARVEMNGHLIGSKPVIITFVELK 113
+ EA KA EMNG +I SKP+ + + K
Sbjct: 332 SAEEATKAVTEMNGRIIASKPLYVALAQRK 361
>gi|172092|gb|AAA34838.1| polyadenylate-binding protein [Saccharomyces cerevisiae]
Length = 577
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 84/309 (27%), Positives = 150/309 (48%), Gaps = 23/309 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KG++ W + D R N + + NL P +DN+AL + F FG +
Sbjct: 105 KGRLCRIMWSQ---RDPSLRKKGSGN-------IFIKNLHPDIDNKALYDTFSVFGDILS 154
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
++A ++N +S+GF + F AK+A +NG L+ + + + L +R +
Sbjct: 155 SKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVA-PHLSRKERDSQL-- 211
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
EE + ++VKN+ +E+ + F KFG I+ + +D +GK KGFGF+ + ++
Sbjct: 212 EETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHED 271
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A KA+ +N + +V A+ + KK + + + + +FV NL
Sbjct: 272 AVKAVEALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDD 331
Query: 239 NINNSEFEELFARFGTITSSSLVS-----DKHIGFIEFIMPKHATHAVSTMNGHVFKSKP 293
++++ + EE FA +GTITS+ ++ K GF+ F P+ AT A++ N + KP
Sbjct: 332 SVDDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKP 391
Query: 294 LKVTLSGTK 302
L V ++ K
Sbjct: 392 LYVAIAQRK 400
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 85/268 (31%), Positives = 130/268 (48%), Gaps = 24/268 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +LEPSV L + F G++ +RV R+ S G+A + FN +KA ++
Sbjct: 40 LYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQL 99
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N I + I + + P R K G +F+KNL +D + L F FG
Sbjct: 100 NYTPIKGRLCRIMWSQRDPSLRKKGSG---------NIFIKNLHPDIDNKALYDTFSVFG 150
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
+I+ KI DENGKSKGFGF+ F AA++AI +NG ++ +V+ +
Sbjct: 151 DILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVA-------PHLS 203
Query: 216 PKVKPPLLQP--ARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGF 268
K + L+ A ++V N+ S + +F+ELFA+FG I S+SL D K GF
Sbjct: 204 RKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGF 263
Query: 269 IEFIMPKHATHAVSTMNGHVFKSKPLKV 296
+ + + A AV +N + L V
Sbjct: 264 VNYEKHEDAVKAVEALNDSELNGEKLYV 291
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 52/88 (59%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L V NL+ SVD++ L EF +GT+ +V R +N +S+GF + F+TP EA KA
Sbjct: 319 YQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKA 378
Query: 92 RVEMNGHLIGSKPVIITFVELKPGQRSK 119
E N ++ KP+ + + K +RS+
Sbjct: 379 ITEKNQQIVAGKPLYVAIAQRKDVRRSQ 406
>gi|6321013|ref|NP_011092.1| Pab1p [Saccharomyces cerevisiae S288c]
gi|417441|sp|P04147.4|PABP_YEAST RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=ARS consensus-binding protein ACBP-67;
AltName: Full=Polyadenylate tail-binding protein
gi|171967|gb|AAA34787.1| poly (A)-binding protein [Saccharomyces cerevisiae]
gi|218386|dbj|BAA00017.1| polyadenylate-binding protein [Saccharomyces cerevisiae]
gi|603406|gb|AAB64692.1| Pab1p: polyadenylate-binding protein [Saccharomyces cerevisiae]
gi|51013159|gb|AAT92873.1| YER165W [Saccharomyces cerevisiae]
gi|151944882|gb|EDN63141.1| poly(A) binding protein [Saccharomyces cerevisiae YJM789]
gi|207345803|gb|EDZ72507.1| YER165Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|259146093|emb|CAY79353.1| Pab1p [Saccharomyces cerevisiae EC1118]
gi|285811799|tpg|DAA07827.1| TPA: Pab1p [Saccharomyces cerevisiae S288c]
gi|365765943|gb|EHN07446.1| Pab1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392299869|gb|EIW10961.1| Pab1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 577
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 84/309 (27%), Positives = 150/309 (48%), Gaps = 23/309 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KG++ W + D R N + + NL P +DN+AL + F FG +
Sbjct: 105 KGRLCRIMWSQ---RDPSLRKKGSGN-------IFIKNLHPDIDNKALYDTFSVFGDILS 154
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
++A ++N +S+GF + F AK+A +NG L+ + + + L +R +
Sbjct: 155 SKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVA-PHLSRKERDSQL-- 211
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
EE + ++VKN+ +E+ + F KFG I+ + +D +GK KGFGF+ + ++
Sbjct: 212 EETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHED 271
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A KA+ +N + +V A+ + KK + + + + +FV NL
Sbjct: 272 AVKAVEALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDD 331
Query: 239 NINNSEFEELFARFGTITSSSLVS-----DKHIGFIEFIMPKHATHAVSTMNGHVFKSKP 293
++++ + EE FA +GTITS+ ++ K GF+ F P+ AT A++ N + KP
Sbjct: 332 SVDDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKP 391
Query: 294 LKVTLSGTK 302
L V ++ K
Sbjct: 392 LYVAIAQRK 400
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 85/268 (31%), Positives = 130/268 (48%), Gaps = 24/268 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +LEPSV L + F G++ +RV R+ S G+A + FN +KA ++
Sbjct: 40 LYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQL 99
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N I + I + + P R K G +F+KNL +D + L F FG
Sbjct: 100 NYTPIKGRLCRIMWSQRDPSLRKKGSG---------NIFIKNLHPDIDNKALYDTFSVFG 150
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
+I+ KI DENGKSKGFGF+ F AA++AI +NG ++ +V+ +
Sbjct: 151 DILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVA-------PHLS 203
Query: 216 PKVKPPLLQP--ARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGF 268
K + L+ A ++V N+ S + +F+ELFA+FG I S+SL D K GF
Sbjct: 204 RKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGF 263
Query: 269 IEFIMPKHATHAVSTMNGHVFKSKPLKV 296
+ + + A AV +N + L V
Sbjct: 264 VNYEKHEDAVKAVEALNDSELNGEKLYV 291
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 52/88 (59%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L V NL+ SVD++ L EF +GT+ +V R +N +S+GF + F+TP EA KA
Sbjct: 319 YQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKA 378
Query: 92 RVEMNGHLIGSKPVIITFVELKPGQRSK 119
E N ++ KP+ + + K +RS+
Sbjct: 379 ITEKNQQIVAGKPLYVAIAQRKDVRRSQ 406
>gi|383862671|ref|XP_003706807.1| PREDICTED: polyadenylate-binding protein 1-like isoform 3
[Megachile rotundata]
Length = 601
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 82/274 (29%), Positives = 140/274 (51%), Gaps = 42/274 (15%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ ++DN+A+ + F FG + +VA++++ S+G+ + F T A K+ ++NG
Sbjct: 103 IKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDKVNGM 162
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ K KN E + +++LK F K+G I
Sbjct: 163 LLNGK--------------------------------KNFGEDMTDDKLKEMFEKYGTIT 190
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMI-QHNSTFVSLAEIVPG-----K 212
K++ ++GKS+GFGF+ F AAE+A++E+NG+ + + +V A+ K
Sbjct: 191 SHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELK 250
Query: 213 KVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGF 268
+ F ++K L + ++V NL +IN+ FA FGTITS+ ++ + K GF
Sbjct: 251 RKFEQLKLERLSRYQGVNLYVKNLDDSINDERLRREFAPFGTITSAKVMMEDGRSKGFGF 310
Query: 269 IEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
+ F P+ AT AV+ MNG + +KPL V L+ K
Sbjct: 311 VCFSAPEEATKAVTEMNGRIIVTKPLYVALAQRK 344
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 74/261 (28%), Positives = 122/261 (46%), Gaps = 49/261 (18%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L + L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHADITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I +P+ I + + P R VG VF+KNL + +D + +
Sbjct: 68 ALDTMNFDMIKGRPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKNIDNKAMYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVP 210
F FGNI+ K+ +DE+G SKG+GF+ F + +AA K+I ++NG ++
Sbjct: 119 FSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDKVNGMLLN------------- 165
Query: 211 GKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLV-----SDKH 265
GKK N ++ + + +E+F ++GTITS ++ +
Sbjct: 166 GKK---------------------NFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRG 204
Query: 266 IGFIEFIMPKHATHAVSTMNG 286
GF+ F P A AV +NG
Sbjct: 205 FGFVAFEDPDAAEQAVLELNG 225
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 103/191 (53%), Gaps = 12/191 (6%)
Query: 28 NNKVYKENELHVN---NLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNT 84
N + K N + +N N + + L F+K+GT+ +V + +SRGF + F
Sbjct: 153 NKSIDKVNGMLLNGKKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFED 212
Query: 85 PAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDK--------VFVK 136
P A++A +E+NG + + K +R + + + +Q K ++ ++VK
Sbjct: 213 PDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLSRYQGVNLYVK 272
Query: 137 NLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMI 196
NL +++++E L+ F FG I K++ E+G+SKGFGF+ F + + A KA+ EMNGR+I
Sbjct: 273 NLDDSINDERLRREFAPFGTITSAKVMM-EDGRSKGFGFVCFSAPEEATKAVTEMNGRII 331
Query: 197 QHNSTFVSLAE 207
+V+LA+
Sbjct: 332 VTKPLYVALAQ 342
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 49/82 (59%), Gaps = 1/82 (1%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L+V NL+ S++++ L EF FGT+ +V ++ S+GF + F+ P EA KA
Sbjct: 264 YQGVNLYVKNLDDSINDERLRREFAPFGTITSAKVMM-EDGRSKGFGFVCFSAPEEATKA 322
Query: 92 RVEMNGHLIGSKPVIITFVELK 113
EMNG +I +KP+ + + K
Sbjct: 323 VTEMNGRIIVTKPLYVALAQRK 344
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 76/176 (43%), Gaps = 17/176 (9%)
Query: 123 PEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSY 181
P Y ++V +L + E L F G ++ +++ RD +S G+ ++ F
Sbjct: 3 PGAPNYPMASLYVGDLHADITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 182 KAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNIN 241
AE+A+ MN MI+ + ++ + P L+ + +F+ NL NI+
Sbjct: 63 ADAERALDTMNFDMIKGRPIRIMWSQ-----------RDPSLRKSGVGNVFIKNLDKNID 111
Query: 242 NSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSK 292
N + F+ FG I S + D K GF+ F + A ++ +NG + K
Sbjct: 112 NKAMYDTFSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDKVNGMLLNGK 167
>gi|323355343|gb|EGA87168.1| Pab1p [Saccharomyces cerevisiae VL3]
Length = 563
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 84/309 (27%), Positives = 150/309 (48%), Gaps = 23/309 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KG++ W + D R N + + NL P +DN+AL + F FG +
Sbjct: 105 KGRLCRIMWSQ---RDPSLRKKGSGN-------IFIKNLHPDIDNKALYDTFSVFGDILS 154
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
++A ++N +S+GF + F AK+A +NG L+ + + + L +R +
Sbjct: 155 SKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVA-PHLSRKERDSQL-- 211
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
EE + ++VKN+ +E+ + F KFG I+ + +D +GK KGFGF+ + ++
Sbjct: 212 EETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHED 271
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A KA+ +N + +V A+ + KK + + + + +FV NL
Sbjct: 272 AVKAVEALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDD 331
Query: 239 NINNSEFEELFARFGTITSSSLVS-----DKHIGFIEFIMPKHATHAVSTMNGHVFKSKP 293
++++ + EE FA +GTITS+ ++ K GF+ F P+ AT A++ N + KP
Sbjct: 332 SVDDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKP 391
Query: 294 LKVTLSGTK 302
L V ++ K
Sbjct: 392 LYVAIAQRK 400
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 91/291 (31%), Positives = 140/291 (48%), Gaps = 26/291 (8%)
Query: 16 ISDDE-GARSNKENNKVYKEN-ELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-ND 72
I DD+ A + E+ V + L+V +LEPSV L + F G++ +RV R+
Sbjct: 17 IQDDQKQAATGSESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITK 76
Query: 73 ESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDK 132
S G+A + FN +KA ++N I + I + + P R K G
Sbjct: 77 TSLGYAYVNFNDHEAGRKAIEQLNYTPIKGRLCRIMWSQRDPSLRKKGSG---------N 127
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMN 192
+F+KNL +D + L F FG+I+ KI DENGKSKGFGF+ F AA++AI +N
Sbjct: 128 IFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALN 187
Query: 193 GRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQP--ARKNKIFVANLPSNINNSEFEELFA 250
G ++ +V+ + K + L+ A ++V N+ S + +F+ELFA
Sbjct: 188 GMLLNGQEIYVA-------PHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFA 240
Query: 251 RFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
+FG I S+SL D K GF+ + + A AV +N + L V
Sbjct: 241 KFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYV 291
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 52/88 (59%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L V NL+ SVD++ L EF +GT+ +V R +N +S+GF + F+TP EA KA
Sbjct: 319 YQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKA 378
Query: 92 RVEMNGHLIGSKPVIITFVELKPGQRSK 119
E N ++ KP+ + + K +RS+
Sbjct: 379 ITEKNQQIVAGKPLYVAIAQRKDVRRSQ 406
>gi|349577826|dbj|GAA22994.1| K7_Pab1p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 577
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 84/309 (27%), Positives = 150/309 (48%), Gaps = 23/309 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KG++ W + D R N + + NL P +DN+AL + F FG +
Sbjct: 105 KGRLCRIMWSQ---RDPSLRKKGSGN-------IFIKNLHPDIDNKALYDTFSVFGDILS 154
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
++A ++N +S+GF + F AK+A +NG L+ + + + L +R +
Sbjct: 155 SKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVA-PHLSRKERDSQL-- 211
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
EE + ++VKN+ +E+ + F KFG I+ + +D +GK KGFGF+ + ++
Sbjct: 212 EETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHED 271
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A KA+ +N + +V A+ + KK + + + + +FV NL
Sbjct: 272 AVKAVEALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDD 331
Query: 239 NINNSEFEELFARFGTITSSSLVS-----DKHIGFIEFIMPKHATHAVSTMNGHVFKSKP 293
++++ + EE FA +GTITS+ ++ K GF+ F P+ AT A++ N + KP
Sbjct: 332 SVDDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKP 391
Query: 294 LKVTLSGTK 302
L V ++ K
Sbjct: 392 LYVAIAQRK 400
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 85/268 (31%), Positives = 130/268 (48%), Gaps = 24/268 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +LEPSV L + F G++ +RV R+ S G+A + FN +KA ++
Sbjct: 40 LYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQL 99
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N I + I + + P R K G +F+KNL +D + L F FG
Sbjct: 100 NYTPIKGRLCRIMWSQRDPSLRKKGSG---------NIFIKNLHPDIDNKALYDTFSVFG 150
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
+I+ KI DENGKSKGFGF+ F AA++AI +NG ++ +V+ +
Sbjct: 151 DILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVA-------PHLS 203
Query: 216 PKVKPPLLQP--ARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGF 268
K + L+ A ++V N+ S + +F+ELFA+FG I S+SL D K GF
Sbjct: 204 RKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGF 263
Query: 269 IEFIMPKHATHAVSTMNGHVFKSKPLKV 296
+ + + A AV +N + L V
Sbjct: 264 VNYEKHEDAVKAVEALNDSELNGEKLYV 291
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 52/88 (59%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L V NL+ SVD++ L EF +GT+ +V R +N +S+GF + F+TP EA KA
Sbjct: 319 YQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKA 378
Query: 92 RVEMNGHLIGSKPVIITFVELKPGQRSK 119
E N ++ KP+ + + K +RS+
Sbjct: 379 ITEKNQQIVAGKPLYVAIAQRKDVRRSQ 406
>gi|345316987|ref|XP_003429815.1| PREDICTED: embryonic polyadenylate-binding protein A-like
[Ornithorhynchus anatinus]
Length = 540
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 93/327 (28%), Positives = 152/327 (46%), Gaps = 66/327 (20%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKK 90
Y L+V +L V L +F G++ +RV R+ + S G+A I F PA+A++
Sbjct: 8 YPLASLYVGDLHVDVTEAMLYEKFSPAGSIISIRVCRDVASRRSLGYAYINFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I +P+ I + + PG R VG +F+KNL +++D + L
Sbjct: 68 ALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVG---------NIFIKNLDDSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAI---------------------- 188
F FGNI+ K+V DE+G S+GFGF+ F + +AA +AI
Sbjct: 119 FSTFGNILSCKVVCDEHG-SRGFGFVHFETREAASQAISTMNGMLLNDRKVGAQPCCPAG 177
Query: 189 ------------------------IEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQ 224
MNG+ + +V A+ ++ K K ++
Sbjct: 178 RVGSGKRPPSGRSRPAGPVPAQAVTSMNGKELNGRVLYVGRAQKRTERQSELKRKFEQIK 237
Query: 225 PARKNK-----IFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPK 275
R N+ ++V NL I++ + + F+ +GTITS+ ++++ K GF+ F P+
Sbjct: 238 QERVNRYQGVNLYVKNLDDCIDDEKLRKEFSPYGTITSAKVMTESGHSKGFGFVCFSSPE 297
Query: 276 HATHAVSTMNGHVFKSKPLKVTLSGTK 302
AT AV+ MNG + +KPL V L+ K
Sbjct: 298 EATKAVTEMNGRIVSTKPLYVALAQRK 324
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/257 (28%), Positives = 117/257 (45%), Gaps = 65/257 (25%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KG+ + W + D G R + N + + NL+ S+DN+AL + F FG +
Sbjct: 78 KGRPIRIMWSQ---RDPGLRKSGVGN-------IFIKNLDDSIDNKALYDTFSTFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHL-----IGSKPVI----ITFVELKP 114
+V +++ SRGF + F T A +A MNG L +G++P + + P
Sbjct: 128 CKVVCDEHG-SRGFGFVHFETREAASQAISTMNGMLLNDRKVGAQPCCPAGRVGSGKRPP 186
Query: 115 GQRSKPVGP---------------------------EEKQ-----------------YKK 130
RS+P GP E+Q Y+
Sbjct: 187 SGRSRPAGPVPAQAVTSMNGKELNGRVLYVGRAQKRTERQSELKRKFEQIKQERVNRYQG 246
Query: 131 DKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIE 190
++VKNL + +D+E+L+ F +G I K++ E+G SKGFGF+ F S + A KA+ E
Sbjct: 247 VNLYVKNLDDCIDDEKLRKEFSPYGTITSAKVM-TESGHSKGFGFVCFSSPEEATKAVTE 305
Query: 191 MNGRMIQHNSTFVSLAE 207
MNGR++ +V+LA+
Sbjct: 306 MNGRIVSTKPLYVALAQ 322
Score = 41.2 bits (95), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGF--IEFIMPKHATHAVSTM 284
++V +L ++ + E F+ G+I S + D + +G+ I F P A A+ TM
Sbjct: 13 LYVGDLHVDVTEAMLYEKFSPAGSIISIRVCRDVASRRSLGYAYINFQQPADAERALDTM 72
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N V K +P+++ S PG+
Sbjct: 73 NFEVIKGRPIRIMWSQRDPGL 93
>gi|218192545|gb|EEC74972.1| hypothetical protein OsI_11001 [Oryza sativa Indica Group]
Length = 647
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 81/275 (29%), Positives = 143/275 (52%), Gaps = 18/275 (6%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN-G 97
V NL VDN +L F KFG + +VA+N++ SRG+ + F A + +N
Sbjct: 130 VKNLNDLVDNVSLQELFCKFGDILSCKVAKNEDGTSRGYGFVQFALQESADASIQNLNNS 189
Query: 98 HLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNI 157
H G + + TF+ K +RS K +++KNL + + EE +K F ++G +
Sbjct: 190 HFCGRQLHVATFI--KKSERST-----NNDDKYTNLYMKNLDDDITEELIKLKFSQYGLV 242
Query: 158 IEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPK 217
I VKI++ ++G SKGFGF+ F + ++A++A MNG ++ + +V+ A+ +K + +
Sbjct: 243 ISVKIMKRDDGTSKGFGFVSFQNPESAKRAKESMNGMLLGSKTLYVARAQKKAERKQYLQ 302
Query: 218 V-----KPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIG 267
+ ++ + + +++ N+ + + E F FG ITS+ ++ D K G
Sbjct: 303 CLHEEKRNEIITKSNGSNVYIKNINDEVGDDALRERFNEFGNITSAKIMRDEKGISKGFG 362
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F+ + P+ A AVS M G +F KPL V ++ K
Sbjct: 363 FVCYNTPEEAKCAVSNMRGVMFYGKPLYVAIAQRK 397
Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 81/272 (29%), Positives = 132/272 (48%), Gaps = 33/272 (12%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVAR-NKNDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L SV + L+ F K GTL VRV R N S + + + + A+A A ++
Sbjct: 40 LYVGDLHESVREEHLLEVFGKIGTLTSVRVCRDNATSNSLRYGYVNYLSQADAAIALEKL 99
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI KP+ + + P R VG VFVKNL + VD L+ F KFG
Sbjct: 100 NHSLILDKPIRVMWSNRDPDARRSGVG---------NVFVKNLNDLVDNVSLQELFCKFG 150
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMN-----GRMIQHNSTFVSLAEIVP 210
+I+ K+ ++E+G S+G+GF+QF ++A+ +I +N GR + H +TF+ +E
Sbjct: 151 DILSCKVAKNEDGTSRGYGFVQFALQESADASIQNLNNSHFCGRQL-HVATFIKKSERST 209
Query: 211 GKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLV-----SDKH 265
+ +++ NL +I + F+++G + S ++ + K
Sbjct: 210 NND------------DKYTNLYMKNLDDDITEELIKLKFSQYGLVISVKIMKRDDGTSKG 257
Query: 266 IGFIEFIMPKHATHAVSTMNGHVFKSKPLKVT 297
GF+ F P+ A A +MNG + SK L V
Sbjct: 258 FGFVSFQNPESAKRAKESMNGMLLGSKTLYVA 289
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 103/192 (53%), Gaps = 7/192 (3%)
Query: 23 RSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVF 82
+S + N K L++ NL+ + + + +F ++G + V++ + + S+GF + F
Sbjct: 204 KSERSTNNDDKYTNLYMKNLDDDITEELIKLKFSQYGLVISVKIMKRDDGTSKGFGFVSF 263
Query: 83 NTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKK-------DKVFV 135
P AK+A+ MNG L+GSK + + + K ++ E++ + V++
Sbjct: 264 QNPESAKRAKESMNGMLLGSKTLYVARAQKKAERKQYLQCLHEEKRNEIITKSNGSNVYI 323
Query: 136 KNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRM 195
KN+ + V ++ L+ F +FGNI KI+RDE G SKGFGF+ + + + A+ A+ M G M
Sbjct: 324 KNINDEVGDDALRERFNEFGNITSAKIMRDEKGISKGFGFVCYNTPEEAKCAVSNMRGVM 383
Query: 196 IQHNSTFVSLAE 207
+V++A+
Sbjct: 384 FYGKPLYVAIAQ 395
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 2/96 (2%)
Query: 26 KENNKVYKEN--ELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFN 83
K N + K N +++ N+ V + AL F +FG + ++ R++ S+GF + +N
Sbjct: 308 KRNEIITKSNGSNVYIKNINDEVGDDALRERFNEFGNITSAKIMRDEKGISKGFGFVCYN 367
Query: 84 TPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSK 119
TP EAK A M G + KP+ + + K +R+K
Sbjct: 368 TPEEAKCAVSNMRGVMFYGKPLYVAIAQRKEERRAK 403
>gi|218195166|gb|EEC77593.1| hypothetical protein OsI_16552 [Oryza sativa Indica Group]
Length = 659
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 88/306 (28%), Positives = 149/306 (48%), Gaps = 28/306 (9%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ ++D++ L + F FG + +VA ++ +S+GF + ++ A+ A +N
Sbjct: 129 IFIKNLDKAIDHKTLHDTFSAFGNILSCKVATDEMGQSKGFGFVQYDKGEAAQSAIKSLN 188
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G LI KPV + L+ +R V + K + VFVKNL E+ +E+L F +GN
Sbjct: 189 GMLINDKPVYVGPF-LRKQERENSV----DKTKFNNVFVKNLSESTTKEDLVKIFGAYGN 243
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEI-----VPG 211
I I+ +GKS+ FGFI F S A +A+ E+NG+ I +V A+ +
Sbjct: 244 ITSAVIMVGMDGKSRCFGFINFKSPDDAARAVEELNGKKINDKEWYVGRAQKKSEREIEL 303
Query: 212 KKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHI 266
K+ F + + +++ NL +I + + ELF+ +G ITS ++ D K
Sbjct: 304 KRRFEQSMKDAADKYQGLNLYMKNLDDSIGDDQLCELFSNYGKITSCKIMRDANGVSKGS 363
Query: 267 GFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKPGVSI-------------TNPTKA 313
GF+ F + A+ A++ MNG + KPL V + K + P+ A
Sbjct: 364 GFVAFSTREEASQALTEMNGKMISGKPLYVAFAQRKEDRKVMLQAQFSQVRPVPMTPSMA 423
Query: 314 PKKPAY 319
P+ P Y
Sbjct: 424 PRLPMY 429
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 77/256 (30%), Positives = 125/256 (48%), Gaps = 22/256 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKKARVEM 95
L+V +LE SV + L F + G + VRV R+ + S G+A + FN P +A +A +
Sbjct: 41 LYVGDLEASVTDSQLYELFSQAGQVMSVRVCRDISSRRSLGYAYVNFNNPVDAARALELL 100
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N + KP+ + + P R + +F+KNL + +D + L F FG
Sbjct: 101 NFAPLNGKPIRVMYSNRDPSSR---------RSGSANIFIKNLDKAIDHKTLHDTFSAFG 151
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ DE G+SKGFGF+Q+ +AA+ AI +NG +I +V G +
Sbjct: 152 NILSCKVATDEMGQSKGFGFVQYDKGEAAQSAIKSLNGMLINDKPVYV-------GPFLR 204
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLV-----SDKHIGFIE 270
+ + + + N +FV NL + + ++F +G ITS+ ++ + GFI
Sbjct: 205 KQERENSVDKTKFNNVFVKNLSESTTKEDLVKIFGAYGNITSAVIMVGMDGKSRCFGFIN 264
Query: 271 FIMPKHATHAVSTMNG 286
F P A AV +NG
Sbjct: 265 FKSPDDAARAVEELNG 280
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 110/224 (49%), Gaps = 16/224 (7%)
Query: 23 RSNKENNKVYKE--NELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAII 80
R + N V K N + V NL S + L+ F +G + + + +SR F I
Sbjct: 204 RKQERENSVDKTKFNNVFVKNLSESTTKEDLVKIFGAYGNITSAVIMVGMDGKSRCFGFI 263
Query: 81 VFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDK-------- 132
F +P +A +A E+NG I K + + K +R + +Q KD
Sbjct: 264 NFKSPDDAARAVEELNGKKINDKEWYVGRAQ-KKSEREIELKRRFEQSMKDAADKYQGLN 322
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMN 192
+++KNL +++ +++L F +G I KI+RD NG SKG GF+ F + + A +A+ EMN
Sbjct: 323 LYMKNLDDSIGDDQLCELFSNYGKITSCKIMRDANGVSKGSGFVAFSTREEASQALTEMN 382
Query: 193 GRMIQHNSTFVSLAEIVPGKKV-----FPKVKPPLLQPARKNKI 231
G+MI +V+ A+ +KV F +V+P + P+ ++
Sbjct: 383 GKMISGKPLYVAFAQRKEDRKVMLQAQFSQVRPVPMTPSMAPRL 426
>gi|296203566|ref|XP_002748951.1| PREDICTED: polyadenylate-binding protein 1 isoform 2 [Callithrix
jacchus]
Length = 604
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 96/332 (28%), Positives = 149/332 (44%), Gaps = 61/332 (18%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F G + +RV R+ S G+A + F P +A++
Sbjct: 8 YPMTSLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMFTRRSSGYAYVNFQHPKDAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEK------------------------ 126
A MN +I K V I + + P R V +E
Sbjct: 68 ALDTMNFDVINGKSVRIMWSQRDPSLRKSGVVCDENGSKGYGFVHFETQEAAERAIEKMN 127
Query: 127 ------------QYKKDK---------------VFVKNLVETVDEEELKSHFIKFGNIIE 159
++K K V+VKN E +D+E LK F KFG +
Sbjct: 128 GMLLNDQKVFVGRFKSRKEREAELGARAKEFTNVYVKNFGEDMDDEHLKDLFGKFGPTLS 187
Query: 160 VKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKV 214
VK++ DE GKSKGFGF+ F + A+KA+ E+NG+ + +V A+ K+
Sbjct: 188 VKVMTDERGKSKGFGFVSFERGEDAQKAVDELNGKELSGKQIYVGRAQKKVERQTELKRK 247
Query: 215 FPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGFIE 270
F ++K + + ++V L I++ + F+ FGTITS+ ++ + K GF+
Sbjct: 248 FEQMKQDKITRYQGLNLYVKYLDDYIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVC 307
Query: 271 FIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F P+ AT AV+ MNG + +KPL V L+ K
Sbjct: 308 FSSPEEATKAVTEMNGKIVATKPLYVALAQRK 339
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 76/248 (30%), Positives = 123/248 (49%), Gaps = 36/248 (14%)
Query: 21 GARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAII 80
GAR+ KE VY V N +D++ L + F KFG V+V ++ +S+GF +
Sbjct: 152 GARA-KEFTNVY------VKNFGEDMDDEHLKDLFGKFGPTLSVKVMTDERGKSKGFGFV 204
Query: 81 VFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKV------- 133
F +A+KA E+NG + K + + + K +R + + +Q K+DK+
Sbjct: 205 SFERGEDAQKAVDELNGKELSGKQIYVGRAQ-KKVERQTELKRKFEQMKQDKITRYQGLN 263
Query: 134 -FVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMN 192
+VK L + +D+E L+ F FG I K++ E G+SKGFGF+ F S + A KA+ EMN
Sbjct: 264 LYVKYLDDYIDDERLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMN 322
Query: 193 GRMIQHNSTFVSLAEIVPGKKVF-----------------PKVKPPLLQPARKNKIFVAN 235
G+++ +V+LA+ ++ P KP QPA + F+A
Sbjct: 323 GKIVATKPLYVALAQRKEERQAHLTNEHMHRTASVRAVPNPASKP--YQPAPPSGYFMAA 380
Query: 236 LPSNINNS 243
LP N++
Sbjct: 381 LPQTQNSA 388
>gi|121702907|ref|XP_001269718.1| polyadenylate-binding protein [Aspergillus clavatus NRRL 1]
gi|158512635|sp|A1CRM1.1|PABP_ASPCL RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|119397861|gb|EAW08292.1| polyadenylate-binding protein [Aspergillus clavatus NRRL 1]
Length = 754
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 82/277 (29%), Positives = 131/277 (47%), Gaps = 24/277 (8%)
Query: 28 NNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPA 86
NN L+V L+PSV L F G + +RV R+ S G+A + +N A
Sbjct: 44 NNNQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTA 103
Query: 87 EAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEE 146
+ ++A ++N LI KP I + + P R G VF+KNL +D +
Sbjct: 104 DGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQG---------NVFIKNLDSAIDNKA 154
Query: 147 LKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLA 206
L F FGNI+ K+ +DE G SKG+GF+ + + +AA AI +NG ++ FV
Sbjct: 155 LHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFV--- 211
Query: 207 EIVPGKKVFPKVKPPLLQPARKN--KIFVANLPSNINNSEFEELFARFGTITSSSLVSD- 263
G + K + + N I++ N+ ++ EF ++F +FG ITS++L D
Sbjct: 212 ----GHHISKKDRQSKFDEMKANFTNIYIKNIDPDVTEEEFRKIFEQFGEITSATLSRDP 267
Query: 264 ----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
+ GF+ + + A AV M+ K++ L V
Sbjct: 268 EGKSRGFGFVNYSTHESAQAAVDEMHDKEVKTQKLYV 304
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 72/265 (27%), Positives = 137/265 (51%), Gaps = 18/265 (6%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK W + D R + N + + NL+ ++DN+AL + F FG +
Sbjct: 118 KGKPCRIMWSQ---RDPALRKTGQGN-------VFIKNLDSAIDNKALHDTFAAFGNILS 167
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+VA+++ S+G+ + + T A A +NG L+ K V + K ++SK
Sbjct: 168 CKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKF--- 224
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
+E + +++KN+ V EEE + F +FG I + RD GKS+GFGF+ + ++++
Sbjct: 225 DEMKANFTNIYIKNIDPDVTEEEFRKIFEQFGEITSATLSRDPEGKSRGFGFVNYSTHES 284
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAEIVPGK--KVFPKVKPPLLQPARKNK---IFVANLPS 238
A+ A+ EM+ + ++ +V A+ + ++ + + L+ A K + ++V NL
Sbjct: 285 AQAAVDEMHDKEVKTQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTD 344
Query: 239 NINNSEFEELFARFGTITSSSLVSD 263
++++ + ELF +GTITS+ ++ D
Sbjct: 345 DVDDEKLRELFGPYGTITSAKVMRD 369
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 56/235 (23%), Positives = 100/235 (42%), Gaps = 68/235 (28%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+++ N++P V + F++FG + ++R+ +SRGF + ++T A+ A EM+
Sbjct: 234 IYIKNIDPDVTEEEFRKIFEQFGEITSATLSRDPEGKSRGFGFVNYSTHESAQAAVDEMH 293
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKV-----------FVKNLVETVDEE 145
+ ++ + + + K +R + + KQY+ ++ +VKNL + VD+E
Sbjct: 294 DKEVKTQKLYVGRAQKK-HEREEEL---RKQYEAARLEKASKYQGVNLYVKNLTDDVDDE 349
Query: 146 ELKSHFIKFGNIIEVKIVRDEN-------------------------------------- 167
+L+ F +G I K++RD
Sbjct: 350 KLRELFGPYGTITSAKVMRDSTPAERTETPDSEKEKEVNKENEKKEDEEKAAEEKPKESD 409
Query: 168 ---------------GKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
GKSKGFGF+ F S A KA+ EMN RM+ +V+LA+
Sbjct: 410 EEKKDETKKSDKKLLGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQ 464
Score = 42.0 bits (97), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 57/153 (37%), Gaps = 55/153 (35%)
Query: 20 EGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARN---------- 69
E AR K + Y+ L+V NL VD++ L F +GT+ +V R+
Sbjct: 322 EAARLEKASK--YQGVNLYVKNLTDDVDDEKLRELFGPYGTITSAKVMRDSTPAERTETP 379
Query: 70 --------------------------------KNDE-----------SRGFAIIVFNTPA 86
K DE S+GF + F++P
Sbjct: 380 DSEKEKEVNKENEKKEDEEKAAEEKPKESDEEKKDETKKSDKKLLGKSKGFGFVCFSSPD 439
Query: 87 EAKKARVEMNGHLIGSKPVIITFVELKPGQRSK 119
EA KA EMN ++ KP+ + + K +RS+
Sbjct: 440 EASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQ 472
>gi|302808075|ref|XP_002985732.1| hypothetical protein SELMODRAFT_122762 [Selaginella moellendorffii]
gi|300146641|gb|EFJ13310.1| hypothetical protein SELMODRAFT_122762 [Selaginella moellendorffii]
Length = 635
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 81/274 (29%), Positives = 142/274 (51%), Gaps = 17/274 (6%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S+DN+AL + F +FG + +VA + + +SRG+ + F A+ A ++N
Sbjct: 127 IFIKNLDKSIDNKALYDTFAQFGNILSCKVAVDSSGQSRGYGFVQFEQEDAAQSAIKQVN 186
Query: 97 GHLIGSKPVIIT-FVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
G L+ K V + FV + + + K + V+VKNL + +++LK F +FG
Sbjct: 187 GMLLIEKQVFVGPFVRRQERDLTGGIA------KFNNVYVKNLGDATTDDDLKRVFGEFG 240
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
I ++RD GKSK FGF+ F + A A+ E+NG+ + +V A+ ++
Sbjct: 241 PISSAVVMRDPEGKSKCFGFVNFENADDAALAVEELNGKKMDDKEWYVGRAQKKSEREAE 300
Query: 216 PKVKPPLLQPARKNK-----IFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KH 265
+ + + R +K +++ NL I++ + ELF FGTI S ++ D K
Sbjct: 301 LRARYDQERKERSDKYQGVNLYLKNLDDTIDDDKLRELFHGFGTIISCKVMRDPQGHSKG 360
Query: 266 IGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299
GF+ F + A A++ MNG + +KP+ V L+
Sbjct: 361 SGFVAFSTTEEANRAMTEMNGRMVANKPIYVALA 394
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 75/256 (29%), Positives = 128/256 (50%), Gaps = 22/256 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L+P+V L + F + + +RV R+ + S G+A + +NT +A +A +
Sbjct: 39 LYVGDLDPNVTEGQLYDVFNQVAPVLSIRVCRDLISKRSLGYAYVNYNTGQDASRALEML 98
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N L+ KP+ I F P R + +F+KNL +++D + L F +FG
Sbjct: 99 NFSLVNGKPIRIMFSHRDPSIRKSGMA---------NIFIKNLDKSIDNKALYDTFAQFG 149
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ D +G+S+G+GF+QF AA+ AI ++NG ++ FV G V
Sbjct: 150 NILSCKVAVDSSGQSRGYGFVQFEQEDAAQSAIKQVNGMLLIEKQVFV-------GPFVR 202
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIE 270
+ + A+ N ++V NL + + + +F FG I+S+ ++ D K GF+
Sbjct: 203 RQERDLTGGIAKFNNVYVKNLGDATTDDDLKRVFGEFGPISSAVVMRDPEGKSKCFGFVN 262
Query: 271 FIMPKHATHAVSTMNG 286
F A AV +NG
Sbjct: 263 FENADDAALAVEELNG 278
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 100/184 (54%), Gaps = 7/184 (3%)
Query: 31 VYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKK 90
+ K N ++V NL + + L F +FG + V R+ +S+ F + F +A
Sbjct: 212 IAKFNNVYVKNLGDATTDDDLKRVFGEFGPISSAVVMRDPEGKSKCFGFVNFENADDAAL 271
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRS--KPVGPEEKQYKKDK-----VFVKNLVETVD 143
A E+NG + K + + K + + + +E++ + DK +++KNL +T+D
Sbjct: 272 AVEELNGKKMDDKEWYVGRAQKKSEREAELRARYDQERKERSDKYQGVNLYLKNLDDTID 331
Query: 144 EEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFV 203
+++L+ F FG II K++RD G SKG GF+ F + + A +A+ EMNGRM+ + +V
Sbjct: 332 DDKLRELFHGFGTIISCKVMRDPQGHSKGSGFVAFSTTEEANRAMTEMNGRMVANKPIYV 391
Query: 204 SLAE 207
+LA+
Sbjct: 392 ALAQ 395
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 51/92 (55%)
Query: 26 KENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTP 85
KE + Y+ L++ NL+ ++D+ L F FGT+ +V R+ S+G + F+T
Sbjct: 310 KERSDKYQGVNLYLKNLDDTIDDDKLRELFHGFGTIISCKVMRDPQGHSKGSGFVAFSTT 369
Query: 86 AEAKKARVEMNGHLIGSKPVIITFVELKPGQR 117
EA +A EMNG ++ +KP+ + + + +R
Sbjct: 370 EEANRAMTEMNGRMVANKPIYVALAQKRDERR 401
>gi|302785327|ref|XP_002974435.1| hypothetical protein SELMODRAFT_101161 [Selaginella moellendorffii]
gi|300158033|gb|EFJ24657.1| hypothetical protein SELMODRAFT_101161 [Selaginella moellendorffii]
Length = 642
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 82/282 (29%), Positives = 142/282 (50%), Gaps = 33/282 (11%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S+DN+AL + F +FG + +VA + + +SRG+ + F A+ A ++N
Sbjct: 127 IFIKNLDKSIDNKALYDTFAQFGNILSCKVAVDSSGQSRGYGFVQFEQEDAAQSAIKQVN 186
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKD---------KVFVKNLVETVDEEEL 147
G L+ K V VGP ++ ++D V+VKNL + +++L
Sbjct: 187 GMLLIEKQVF--------------VGPFVRRQERDLTGGVTKFNNVYVKNLGDATTDDDL 232
Query: 148 KSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
K F +FG I ++RD GKSK FGF+ F + A A+ E+NG+ + +V A+
Sbjct: 233 KRVFGEFGPISSAVVMRDPEGKSKCFGFVNFENADDAALAVEELNGKKMDDKEWYVGRAQ 292
Query: 208 IVPGKKVFPKVKPPLLQPARKNK-----IFVANLPSNINNSEFEELFARFGTITSSSLVS 262
++ + + + R +K +++ NL I++ + ELF FGTI S ++
Sbjct: 293 KKSEREAELRARYDQERKERSDKYQGVNLYLKNLDDTIDDDKLRELFHGFGTIISCKVMR 352
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299
D K GF+ F + A A++ MNG + +KP+ V L+
Sbjct: 353 DPQGHSKGSGFVAFSTTEEANRAMTEMNGRMVANKPIYVALA 394
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 74/256 (28%), Positives = 127/256 (49%), Gaps = 22/256 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L+P+V L + F + + +RV R+ + S G+A + +NT +A +A +
Sbjct: 39 LYVGDLDPNVTEGQLYDVFNQVAPVLSIRVCRDLISKRSLGYAYVNYNTGQDASRALEML 98
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N L+ KP+ I F P R + +F+KNL +++D + L F +FG
Sbjct: 99 NFSLVNGKPIRIMFSHRDPSIRKSGMA---------NIFIKNLDKSIDNKALYDTFAQFG 149
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ D +G+S+G+GF+QF AA+ AI ++NG ++ FV G V
Sbjct: 150 NILSCKVAVDSSGQSRGYGFVQFEQEDAAQSAIKQVNGMLLIEKQVFV-------GPFVR 202
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIE 270
+ + + N ++V NL + + + +F FG I+S+ ++ D K GF+
Sbjct: 203 RQERDLTGGVTKFNNVYVKNLGDATTDDDLKRVFGEFGPISSAVVMRDPEGKSKCFGFVN 262
Query: 271 FIMPKHATHAVSTMNG 286
F A AV +NG
Sbjct: 263 FENADDAALAVEELNG 278
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 100/184 (54%), Gaps = 7/184 (3%)
Query: 31 VYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKK 90
V K N ++V NL + + L F +FG + V R+ +S+ F + F +A
Sbjct: 212 VTKFNNVYVKNLGDATTDDDLKRVFGEFGPISSAVVMRDPEGKSKCFGFVNFENADDAAL 271
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRS--KPVGPEEKQYKKDK-----VFVKNLVETVD 143
A E+NG + K + + K + + + +E++ + DK +++KNL +T+D
Sbjct: 272 AVEELNGKKMDDKEWYVGRAQKKSEREAELRARYDQERKERSDKYQGVNLYLKNLDDTID 331
Query: 144 EEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFV 203
+++L+ F FG II K++RD G SKG GF+ F + + A +A+ EMNGRM+ + +V
Sbjct: 332 DDKLRELFHGFGTIISCKVMRDPQGHSKGSGFVAFSTTEEANRAMTEMNGRMVANKPIYV 391
Query: 204 SLAE 207
+LA+
Sbjct: 392 ALAQ 395
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 51/92 (55%)
Query: 26 KENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTP 85
KE + Y+ L++ NL+ ++D+ L F FGT+ +V R+ S+G + F+T
Sbjct: 310 KERSDKYQGVNLYLKNLDDTIDDDKLRELFHGFGTIISCKVMRDPQGHSKGSGFVAFSTT 369
Query: 86 AEAKKARVEMNGHLIGSKPVIITFVELKPGQR 117
EA +A EMNG ++ +KP+ + + + +R
Sbjct: 370 EEANRAMTEMNGRMVANKPIYVALAQKRDERR 401
>gi|334183839|ref|NP_177322.2| Polyadenylate-binding protein 5 [Arabidopsis thaliana]
gi|334183841|ref|NP_001185373.1| Polyadenylate-binding protein 5 [Arabidopsis thaliana]
gi|322510110|sp|Q05196.3|PABP5_ARATH RecName: Full=Polyadenylate-binding protein 5; Short=PABP-5;
Short=Poly(A)-binding protein 5
gi|332197109|gb|AEE35230.1| Polyadenylate-binding protein 5 [Arabidopsis thaliana]
gi|332197110|gb|AEE35231.1| Polyadenylate-binding protein 5 [Arabidopsis thaliana]
Length = 682
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 75/262 (28%), Positives = 127/262 (48%), Gaps = 19/262 (7%)
Query: 30 KVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAK 89
+ + + L+V +L+PSV+ L++ F + + ++RV R+ S G+A + F P +A
Sbjct: 54 QTHPNSSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDAS 113
Query: 90 KARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKS 149
+A +N I +P+ I P R K VF+KNL ++D + L
Sbjct: 114 RAMESLNYAPIRDRPIRIMLSNRDPSTRLS---------GKGNVFIKNLDASIDNKALYE 164
Query: 150 HFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIV 209
F FG I+ K+ D G+SKG+GF+QF + A+ AI ++NG ++ FV
Sbjct: 165 TFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRR 224
Query: 210 PGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----K 264
+ P ++V NLP I + E ++ F ++G I+S+ ++ D +
Sbjct: 225 QDRARSESGAVPSF-----TNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSR 279
Query: 265 HIGFIEFIMPKHATHAVSTMNG 286
GF+ F+ P+ A AV MNG
Sbjct: 280 SFGFVNFVSPEAAAVAVEKMNG 301
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 80/291 (27%), Positives = 154/291 (52%), Gaps = 16/291 (5%)
Query: 24 SNKE-NNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVF 82
SN++ + ++ + + + NL+ S+DN+AL F FGT+ +VA + S+G+ + F
Sbjct: 134 SNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYGFVQF 193
Query: 83 NTPAEAKKARVEMNGHLIGSKPVIIT-FVELKPGQRSKPVGPEEKQYKKDKVFVKNLVET 141
A+ A ++NG L+ K V + FV + RS+ V+VKNL +
Sbjct: 194 EKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSE----SGAVPSFTNVYVKNLPKE 249
Query: 142 VDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNST 201
+ ++ELK F K+G+I +++D++G S+ FGF+ F S +AA A+ +MNG + +
Sbjct: 250 ITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVL 309
Query: 202 FVSLAEIVPGK-----KVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTIT 256
+V A+ + + F + + + + + +++ NL ++N+ + +E+F+ +G +T
Sbjct: 310 YVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLKEMFSEYGNVT 369
Query: 257 SSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
S ++ + + GF+ + P+ A A+ MNG + KPL V L+ K
Sbjct: 370 SCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALAQRK 420
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 100/199 (50%), Gaps = 21/199 (10%)
Query: 23 RSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVF 82
R+ E+ V ++V NL + + L F K+G + V ++++ SR F + F
Sbjct: 227 RARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNF 286
Query: 83 NTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKK------------ 130
+P A A +MNG +G + + G+ K EE+ +K
Sbjct: 287 VSPEAAAVAVEKMNGISLGEDVLYV-------GRAQKKSDREEELRRKFEQERISRFEKL 339
Query: 131 --DKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAI 188
+++KNL ++V++E+LK F ++GN+ K++ + G S+GFGF+ + + + A A+
Sbjct: 340 QGSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAM 399
Query: 189 IEMNGRMIQHNSTFVSLAE 207
EMNG+MI +V+LA+
Sbjct: 400 KEMNGKMIGRKPLYVALAQ 418
>gi|167519406|ref|XP_001744043.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163778005|gb|EDQ91621.1| predicted protein [Monosiga brevicollis MX1]
Length = 563
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 84/277 (30%), Positives = 147/277 (53%), Gaps = 26/277 (9%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL +DN+AL + F FGT+ +VA ++ ESRG+ + F +A+KA +NG
Sbjct: 100 IKNLNKEIDNKALYDTFSAFGTILSCKVAADEKGESRGYGFVHFEKEEDAQKAIDTVNGK 159
Query: 99 LIGSKPVIIT-FVELKPGQRSKPVGPEEKQYKKDKVFVKNLVET-VDEEELKSHFIKFGN 156
++ + V +T F+ K +R + G + Y ++VKNL ++ ++LK F KFG
Sbjct: 160 MLLKQVVTVTKFLSRK--EREQQGG---RTYTN--IYVKNLPDSYATNDDLKKLFEKFGT 212
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNS-TFVSLA--------E 207
I + +DEN KS+GFGF+ F + +AA A+ MN + I+ + FV A E
Sbjct: 213 ITSTFLAKDENDKSRGFGFVNFENSEAANAAVEAMNEKEIETDRKLFVGRAMKKHERERE 272
Query: 208 IVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD---- 263
+ K++ K++ + + + +++ +LP ++ + F++FGTITS +++D
Sbjct: 273 L---KRIHDKIRQERDEKNKNSNLYIKHLPEDVTEDALRDKFSKFGTITSLKIMTDNNGD 329
Query: 264 -KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299
+ GF+ F A A+ M+G + KPL V L+
Sbjct: 330 SRGFGFVNFDSADEAAAAIQEMHGSMIDGKPLYVALA 366
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 127/256 (49%), Gaps = 24/256 (9%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L P V L F + G++ +RV R+ + +S G+A + + A+AK A E+
Sbjct: 10 LYVGDLHPEVTEATLYEFFSQMGSVISIRVCRDAVSRQSLGYAYVNYQQHADAKHALEEL 69
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N I KP I + + P R G +F+KNL + +D + L F FG
Sbjct: 70 NFEKIHDKPCRIMWAQRNPAARRSGAG---------NIFIKNLNKEIDNKALYDTFSAFG 120
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
I+ K+ DE G+S+G+GF+ F + A+KAI +NG+M+ L ++V K
Sbjct: 121 TILSCKVAADEKGESRGYGFVHFEKEEDAQKAIDTVNGKML--------LKQVVTVTKFL 172
Query: 216 PKVKPPLLQPARKNKIFVANLP-SNINNSEFEELFARFGTITSSSLVSDKH-----IGFI 269
+ + I+V NLP S N + ++LF +FGTITS+ L D++ GF+
Sbjct: 173 SRKEREQQGGRTYTNIYVKNLPDSYATNDDLKKLFEKFGTITSTFLAKDENDKSRGFGFV 232
Query: 270 EFIMPKHATHAVSTMN 285
F + A AV MN
Sbjct: 233 NFENSEAANAAVEAMN 248
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 97/194 (50%), Gaps = 9/194 (4%)
Query: 22 ARSNKENNKVYKENELHVNNLEPS-VDNQALINEFKKFGTLRDVRVARNKNDESRGFAII 80
+R +E ++V NL S N L F+KFGT+ +A+++ND+SRGF +
Sbjct: 173 SRKEREQQGGRTYTNIYVKNLPDSYATNDDLKKLFEKFGTITSTFLAKDENDKSRGFGFV 232
Query: 81 VFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPV--------GPEEKQYKKDK 132
F A A MN I + + +K +R + + +++ K
Sbjct: 233 NFENSEAANAAVEAMNEKEIETDRKLFVGRAMKKHERERELKRIHDKIRQERDEKNKNSN 292
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMN 192
+++K+L E V E+ L+ F KFG I +KI+ D NG S+GFGF+ F S A AI EM+
Sbjct: 293 LYIKHLPEDVTEDALRDKFSKFGTITSLKIMTDNNGDSRGFGFVNFDSADEAAAAIQEMH 352
Query: 193 GRMIQHNSTFVSLA 206
G MI +V+LA
Sbjct: 353 GSMIDGKPLYVALA 366
>gi|356502327|ref|XP_003519971.1| PREDICTED: polyadenylate-binding protein 5-like [Glycine max]
Length = 616
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 86/276 (31%), Positives = 146/276 (52%), Gaps = 18/276 (6%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+DN+ L + F FG + +VA + +S+G+ + F+ A+ A E+NG
Sbjct: 97 IKNLDISIDNKTLHDTFAAFGFVLSSKVAVDSIGQSKGYGFVQFDNEESAQNAIKELNGM 156
Query: 99 LIGSKPVII-TFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNI 157
LI K V + FV + +R++ G K V+VKN ET +E+L+ F +G I
Sbjct: 157 LINDKKVYVGLFVNRQ--ERAQVDGSP----KFTNVYVKNFSETYTDEDLEQLFSTYGTI 210
Query: 158 IEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNST-FVSLAEIVPGKKVFP 216
+++D +GKS+ FGF+ F S +A A+ +NG + + +V A+ ++
Sbjct: 211 TSAVVMKDTDGKSRCFGFVNFESPDSAVAAVERLNGTTVNDDKVLYVGRAQRKAEREAEL 270
Query: 217 KVKPPLLQPARKNK-----IFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHI 266
K + L + + K ++V NL NIN+ + +ELF+ FGTITS ++ + K
Sbjct: 271 KARFELERIRKYEKYHGTNLYVKNLDYNINDDKLKELFSEFGTITSCKVMLEPNGRSKGY 330
Query: 267 GFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ F P++A A+ MNG + +PL V ++ K
Sbjct: 331 GFVAFSAPRNANRALHEMNGKMIGRRPLYVAVAQRK 366
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 74/255 (29%), Positives = 124/255 (48%), Gaps = 21/255 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L+V +LE +VD L F + G + +RV R++ + S G+A + F P +A A +N
Sbjct: 8 LYVGDLERNVDEAQLFQLFARVGPIFSIRVCRDETNRSLGYAYVNFVNPQDAANAMEHLN 67
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
+ K + + F P R VF+KNL ++D + L F FG
Sbjct: 68 FTPLNGKSIRVMFSNRDPSIRKSGYA---------NVFIKNLDISIDNKTLHDTFAAFGF 118
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFP 216
++ K+ D G+SKG+GF+QF + ++A+ AI E+NG +I +V L V
Sbjct: 119 VLSSKVAVDSIGQSKGYGFVQFDNEESAQNAIKELNGMLINDKKVYVGLF-------VNR 171
Query: 217 KVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIEF 271
+ + + + ++V N + + E+LF+ +GTITS+ ++ D + GF+ F
Sbjct: 172 QERAQVDGSPKFTNVYVKNFSETYTDEDLEQLFSTYGTITSAVVMKDTDGKSRCFGFVNF 231
Query: 272 IMPKHATHAVSTMNG 286
P A AV +NG
Sbjct: 232 ESPDSAVAAVERLNG 246
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 93/179 (51%), Gaps = 8/179 (4%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
++V N + ++ L F +GT+ V ++ + +SR F + F +P A A +N
Sbjct: 186 VYVKNFSETYTDEDLEQLFSTYGTITSAVVMKDTDGKSRCFGFVNFESPDSAVAAVERLN 245
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGP--------EEKQYKKDKVFVKNLVETVDEEELK 148
G + V+ + +R + + ++Y ++VKNL +++++LK
Sbjct: 246 GTTVNDDKVLYVGRAQRKAEREAELKARFELERIRKYEKYHGTNLYVKNLDYNINDDKLK 305
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
F +FG I K++ + NG+SKG+GF+ F + + A +A+ EMNG+MI +V++A+
Sbjct: 306 ELFSEFGTITSCKVMLEPNGRSKGYGFVAFSAPRNANRALHEMNGKMIGRRPLYVAVAQ 364
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 45/82 (54%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y L+V NL+ ++++ L F +FGT+ +V N S+G+ + F+ P A +A
Sbjct: 285 YHGTNLYVKNLDYNINDDKLKELFSEFGTITSCKVMLEPNGRSKGYGFVAFSAPRNANRA 344
Query: 92 RVEMNGHLIGSKPVIITFVELK 113
EMNG +IG +P+ + + K
Sbjct: 345 LHEMNGKMIGRRPLYVAVAQRK 366
>gi|115459296|ref|NP_001053248.1| Os04g0504800 [Oryza sativa Japonica Group]
gi|32490269|emb|CAE05558.1| OSJNBb0116K07.11 [Oryza sativa Japonica Group]
gi|113564819|dbj|BAF15162.1| Os04g0504800 [Oryza sativa Japonica Group]
gi|215695125|dbj|BAG90316.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 659
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 91/308 (29%), Positives = 152/308 (49%), Gaps = 32/308 (10%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ ++D++ L + F FG + +VA ++ +S+GF + ++ A+ A +N
Sbjct: 129 IFIKNLDKAIDHKTLHDTFSAFGNILSCKVATDEMGQSKGFGFVQYDKGEAAQSAIKSLN 188
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G LI KPV + L+ +R V + K + VFVKNL E+ +E+L F +GN
Sbjct: 189 GMLINDKPVYVGPF-LRKQERENSV----DKTKFNNVFVKNLSESTTKEDLVKIFGAYGN 243
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEI-----VPG 211
I I+ +GKS+ FGFI F S A +A+ E+NG+ I +V A+ +
Sbjct: 244 ITSAVIMVGMDGKSRCFGFINFKSPDDAARAVEELNGKKINDKEWYVGRAQKKSEREIEL 303
Query: 212 KKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHI 266
K+ F + + +++ NL +I + + ELF+ +G ITS ++ D K
Sbjct: 304 KRRFEQSMKDAADKYQGLNLYMKNLDDSIGDDQLCELFSNYGKITSCKIMRDANGVSKGS 363
Query: 267 GFIEFIMPKHATHAVSTMNGHVFKSKPLKVT---------------LSGTKPGVSITNPT 311
GF+ F + A+ A++ MNG + KPL V S +P V +T P+
Sbjct: 364 GFVAFSTREEASQALTEMNGKMISGKPLYVAFAQRKEDRKAMLQAQFSQVRP-VPMT-PS 421
Query: 312 KAPKKPAY 319
AP+ P Y
Sbjct: 422 MAPRLPMY 429
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 77/256 (30%), Positives = 125/256 (48%), Gaps = 22/256 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKKARVEM 95
L+V +LE SV + L F + G + VRV R+ + S G+A + FN P +A +A +
Sbjct: 41 LYVGDLEASVTDSQLYELFSQAGQVMSVRVCRDISSRRSLGYAYVNFNNPVDAARALELL 100
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N + KP+ + + P R + +F+KNL + +D + L F FG
Sbjct: 101 NFAPLNGKPIRVMYSNRDPSSR---------RSGSANIFIKNLDKAIDHKTLHDTFSAFG 151
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ DE G+SKGFGF+Q+ +AA+ AI +NG +I +V G +
Sbjct: 152 NILSCKVATDEMGQSKGFGFVQYDKGEAAQSAIKSLNGMLINDKPVYV-------GPFLR 204
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLV-----SDKHIGFIE 270
+ + + + N +FV NL + + ++F +G ITS+ ++ + GFI
Sbjct: 205 KQERENSVDKTKFNNVFVKNLSESTTKEDLVKIFGAYGNITSAVIMVGMDGKSRCFGFIN 264
Query: 271 FIMPKHATHAVSTMNG 286
F P A AV +NG
Sbjct: 265 FKSPDDAARAVEELNG 280
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 64/224 (28%), Positives = 109/224 (48%), Gaps = 16/224 (7%)
Query: 23 RSNKENNKVYKE--NELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAII 80
R + N V K N + V NL S + L+ F +G + + + +SR F I
Sbjct: 204 RKQERENSVDKTKFNNVFVKNLSESTTKEDLVKIFGAYGNITSAVIMVGMDGKSRCFGFI 263
Query: 81 VFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDK-------- 132
F +P +A +A E+NG I K + + K +R + +Q KD
Sbjct: 264 NFKSPDDAARAVEELNGKKINDKEWYVGRAQ-KKSEREIELKRRFEQSMKDAADKYQGLN 322
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMN 192
+++KNL +++ +++L F +G I KI+RD NG SKG GF+ F + + A +A+ EMN
Sbjct: 323 LYMKNLDDSIGDDQLCELFSNYGKITSCKIMRDANGVSKGSGFVAFSTREEASQALTEMN 382
Query: 193 GRMIQHNSTFVSLAEIVPGKKV-----FPKVKPPLLQPARKNKI 231
G+MI +V+ A+ +K F +V+P + P+ ++
Sbjct: 383 GKMISGKPLYVAFAQRKEDRKAMLQAQFSQVRPVPMTPSMAPRL 426
>gi|58271356|ref|XP_572834.1| polyadenylate-binding protein [Cryptococcus neoformans var.
neoformans JEC21]
gi|134114714|ref|XP_774065.1| hypothetical protein CNBH1100 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|338819167|sp|P0CP47.1|PABP_CRYNB RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|338819168|sp|P0CP46.1|PABP_CRYNJ RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|50256695|gb|EAL19418.1| hypothetical protein CNBH1100 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57229093|gb|AAW45527.1| polyadenylate-binding protein, putative [Cryptococcus neoformans
var. neoformans JEC21]
Length = 673
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 91/311 (29%), Positives = 153/311 (49%), Gaps = 27/311 (8%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KG+ W + D R + N + + NL+ S+DN+AL + F FG +
Sbjct: 113 KGQSCRIMWSQ---RDPALRKTGQGN-------IFIKNLDQSIDNKALHDTFAAFGDILS 162
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V ++N +SRGFA + ++T A A +NG L+ K V +V G++ +
Sbjct: 163 CKVGTDENGKSRGFAFVHYSTGEAADAAIKAVNGMLLNDKKV---YVGHHVGKKERLSKV 219
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
EE + + V++KN+ V + E + FG I V + RDE G SKGFGF+ + ++++
Sbjct: 220 EELRAQFTNVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRDEKGVSKGFGFVNYENHES 279
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNK-------IFVANL 236
A KA+ E+N + + + A+ ++ ++K + +N+ ++V NL
Sbjct: 280 ARKAVDELNEKEVNGKKLYAGRAQTKSEREA--ELKKSHEEKRLENEAKSAGVNLYVKNL 337
Query: 237 PSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKS 291
++ F FGTITSS ++ D + GF+ + P AT AVS MNG + +
Sbjct: 338 DDEWDDDRLRAEFEAFGTITSSKVMRDDSGVSRGFGFVCYSSPDEATKAVSEMNGKMIGT 397
Query: 292 KPLKVTLSGTK 302
KPL V L+ K
Sbjct: 398 KPLYVALAQRK 408
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 78/272 (28%), Positives = 130/272 (47%), Gaps = 20/272 (7%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+PSV L F G + +RV R+ S G+A + + A+ ++A +
Sbjct: 48 LYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEHL 107
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI + I + + P R G +F+KNL +++D + L F FG
Sbjct: 108 NYSLIKGQSCRIMWSQRDPALRKTGQG---------NIFIKNLDQSIDNKALHDTFAAFG 158
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
+I+ K+ DENGKS+GF F+ + + +AA+ AI +NG ++ +V V K+
Sbjct: 159 DILSCKVGTDENGKSRGFAFVHYSTGEAADAAIKAVNGMLLNDKKVYV--GHHVGKKERL 216
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIE 270
KV+ L+ A+ +++ N+ + ++EFE+L FG S +L D K GF+
Sbjct: 217 SKVE--ELR-AQFTNVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRDEKGVSKGFGFVN 273
Query: 271 FIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
+ + A AV +N K L + TK
Sbjct: 274 YENHESARKAVDELNEKEVNGKKLYAGRAQTK 305
>gi|166786|gb|AAA32832.1| poly(A)-binding protein [Arabidopsis thaliana]
Length = 668
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 75/262 (28%), Positives = 127/262 (48%), Gaps = 19/262 (7%)
Query: 30 KVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAK 89
+ + + L+V +L+PSV+ L++ F + + ++RV R+ S G+A + F P +A
Sbjct: 40 QTHPNSSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDAS 99
Query: 90 KARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKS 149
+A +N I +P+ I P R K VF+KNL ++D + L
Sbjct: 100 RAMESLNYAPIRDRPIRIMLSNRDPSTRLS---------GKGNVFIKNLDASIDNKALYE 150
Query: 150 HFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIV 209
F FG I+ K+ D G+SKG+GF+QF + A+ AI ++NG ++ FV
Sbjct: 151 TFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRR 210
Query: 210 PGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----K 264
+ P ++V NLP I + E ++ F ++G I+S+ ++ D +
Sbjct: 211 QDRARSESGAVPSF-----TNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSR 265
Query: 265 HIGFIEFIMPKHATHAVSTMNG 286
GF+ F+ P+ A AV MNG
Sbjct: 266 SFGFVNFVSPEAAAVAVEKMNG 287
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 80/291 (27%), Positives = 154/291 (52%), Gaps = 16/291 (5%)
Query: 24 SNKE-NNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVF 82
SN++ + ++ + + + NL+ S+DN+AL F FGT+ +VA + S+G+ + F
Sbjct: 120 SNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYGFVQF 179
Query: 83 NTPAEAKKARVEMNGHLIGSKPVIIT-FVELKPGQRSKPVGPEEKQYKKDKVFVKNLVET 141
A+ A ++NG L+ K V + FV + RS+ V+VKNL +
Sbjct: 180 EKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSE----SGAVPSFTNVYVKNLPKE 235
Query: 142 VDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNST 201
+ ++ELK F K+G+I +++D++G S+ FGF+ F S +AA A+ +MNG + +
Sbjct: 236 ITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVL 295
Query: 202 FVSLAEIVPGK-----KVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTIT 256
+V A+ + + F + + + + + +++ NL ++N+ + +E+F+ +G +T
Sbjct: 296 YVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLKEMFSEYGNVT 355
Query: 257 SSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
S ++ + + GF+ + P+ A A+ MNG + KPL V L+ K
Sbjct: 356 SCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALAQRK 406
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 100/199 (50%), Gaps = 21/199 (10%)
Query: 23 RSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVF 82
R+ E+ V ++V NL + + L F K+G + V ++++ SR F + F
Sbjct: 213 RARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNF 272
Query: 83 NTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKK------------ 130
+P A A +MNG +G + + G+ K EE+ +K
Sbjct: 273 VSPEAAAVAVEKMNGISLGEDVLYV-------GRAQKKSDREEELRRKFEQERISRFEKL 325
Query: 131 --DKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAI 188
+++KNL ++V++E+LK F ++GN+ K++ + G S+GFGF+ + + + A A+
Sbjct: 326 QGSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAM 385
Query: 189 IEMNGRMIQHNSTFVSLAE 207
EMNG+MI +V+LA+
Sbjct: 386 KEMNGKMIGRKPLYVALAQ 404
>gi|350408508|ref|XP_003488428.1| PREDICTED: polyadenylate-binding protein 1-like isoform 3 [Bombus
impatiens]
Length = 601
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 82/274 (29%), Positives = 141/274 (51%), Gaps = 42/274 (15%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ ++DN+A+ + F FG + +VA++++ S+G+ + F T A K+ +NG
Sbjct: 103 IKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGM 162
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ K KN E + +++LK F K+G I
Sbjct: 163 LLNGK--------------------------------KNFGEDMTDDKLKDMFEKYGTIT 190
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMI-QHNSTFVSLAEIVPGKKVFPK 217
K++ ++GKS+GFGF+ F AAE+A++E+NG+ + + +V A+ ++ K
Sbjct: 191 SHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELK 250
Query: 218 VKPPLLQPARKNK-----IFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGF 268
K L+ R N+ ++V NL +I++ + FA FGTITS+ ++ + K GF
Sbjct: 251 RKFEQLKLERLNRYQGVNLYVKNLDDSIDDERLRKEFAPFGTITSAKVMMEEGRSKGFGF 310
Query: 269 IEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
+ F P+ AT AV+ MNG + +KPL V L+ K
Sbjct: 311 VCFSAPEEATKAVTEMNGRIIVTKPLYVALAQRK 344
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 73/261 (27%), Positives = 121/261 (46%), Gaps = 49/261 (18%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L + L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I +P+ I + + P R VG VF+KNL + +D + +
Sbjct: 68 ALDTMNFDMIKGRPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKNIDNKAMYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVP 210
F FGNI+ K+ +DE+G SKG+GF+ F + +AA K+I +NG ++
Sbjct: 119 FSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLN------------- 165
Query: 211 GKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLV-----SDKH 265
GKK N ++ + + +++F ++GTITS ++ +
Sbjct: 166 GKK---------------------NFGEDMTDDKLKDMFEKYGTITSHKVMIKDDGKSRG 204
Query: 266 IGFIEFIMPKHATHAVSTMNG 286
GF+ F P A AV +NG
Sbjct: 205 FGFVAFEDPDAAEQAVLELNG 225
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 104/191 (54%), Gaps = 12/191 (6%)
Query: 28 NNKVYKENELHVN---NLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNT 84
N + + N + +N N + + L + F+K+GT+ +V + +SRGF + F
Sbjct: 153 NKSIDRVNGMLLNGKKNFGEDMTDDKLKDMFEKYGTITSHKVMIKDDGKSRGFGFVAFED 212
Query: 85 PAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDK--------VFVK 136
P A++A +E+NG + + K +R + + + +Q K ++ ++VK
Sbjct: 213 PDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLNRYQGVNLYVK 272
Query: 137 NLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMI 196
NL +++D+E L+ F FG I K++ +E G+SKGFGF+ F + + A KA+ EMNGR+I
Sbjct: 273 NLDDSIDDERLRKEFAPFGTITSAKVMMEE-GRSKGFGFVCFSAPEEATKAVTEMNGRII 331
Query: 197 QHNSTFVSLAE 207
+V+LA+
Sbjct: 332 VTKPLYVALAQ 342
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L+V NL+ S+D++ L EF FGT+ +V + S+GF + F+ P EA KA
Sbjct: 264 YQGVNLYVKNLDDSIDDERLRKEFAPFGTITSAKVMMEEG-RSKGFGFVCFSAPEEATKA 322
Query: 92 RVEMNGHLIGSKPVIITFVELK 113
EMNG +I +KP+ + + K
Sbjct: 323 VTEMNGRIIVTKPLYVALAQRK 344
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 77/178 (43%), Gaps = 17/178 (9%)
Query: 121 VGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFF 179
+ P Y ++V +L + E L F G ++ +++ RD +S G+ ++ F
Sbjct: 1 MNPGAPNYPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQ 60
Query: 180 SYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSN 239
AE+A+ MN MI+ + ++ + P L+ + +F+ NL N
Sbjct: 61 QPADAERALDTMNFDMIKGRPIRIMWSQ-----------RDPSLRKSGVGNVFIKNLDKN 109
Query: 240 INNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSK 292
I+N + F+ FG I S + D K GF+ F + A ++ +NG + K
Sbjct: 110 IDNKAMYDTFSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGK 167
>gi|328782034|ref|XP_396057.4| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Apis
mellifera]
Length = 601
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 82/274 (29%), Positives = 141/274 (51%), Gaps = 42/274 (15%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ ++DN+A+ + F FG + +VA++++ S+G+ + F T A K+ +NG
Sbjct: 103 IKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGM 162
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ K KN E + +++LK F K+G I
Sbjct: 163 LLNGK--------------------------------KNFGEDMTDDKLKEMFEKYGTIT 190
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMI-QHNSTFVSLAEIVPGKKVFPK 217
K++ ++GKS+GFGF+ F AAE+A++E+NG+ + + +V A+ ++ K
Sbjct: 191 SHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELK 250
Query: 218 VKPPLLQPARKNK-----IFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGF 268
K L+ R N+ ++V NL +I++ + FA FGTITS+ ++ + K GF
Sbjct: 251 RKFEQLKLERLNRYQGVNLYVKNLDDSIDDERLRKEFAPFGTITSAKVMMEEGRSKGFGF 310
Query: 269 IEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
+ F P+ AT AV+ MNG + +KPL V L+ K
Sbjct: 311 VCFSAPEEATKAVTEMNGRIIVTKPLYVALAQRK 344
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 74/261 (28%), Positives = 121/261 (46%), Gaps = 49/261 (18%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L + L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I +P+ I + + P R VG VF+KNL + +D + +
Sbjct: 68 ALDTMNFDMIKGRPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKNIDNKAMYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVP 210
F FGNI+ K+ +DE+G SKG+GF+ F + +AA K+I +NG ++
Sbjct: 119 FSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLN------------- 165
Query: 211 GKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLV-----SDKH 265
GKK N ++ + + +E+F ++GTITS ++ +
Sbjct: 166 GKK---------------------NFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRG 204
Query: 266 IGFIEFIMPKHATHAVSTMNG 286
GF+ F P A AV +NG
Sbjct: 205 FGFVAFEDPDAAEQAVLELNG 225
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L+V NL+ S+D++ L EF FGT+ +V + S+GF + F+ P EA KA
Sbjct: 264 YQGVNLYVKNLDDSIDDERLRKEFAPFGTITSAKVMMEEG-RSKGFGFVCFSAPEEATKA 322
Query: 92 RVEMNGHLIGSKPVIITFVELK 113
EMNG +I +KP+ + + K
Sbjct: 323 VTEMNGRIIVTKPLYVALAQRK 344
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 77/178 (43%), Gaps = 17/178 (9%)
Query: 121 VGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFF 179
+ P Y ++V +L + E L F G ++ +++ RD +S G+ ++ F
Sbjct: 1 MNPGAPNYPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQ 60
Query: 180 SYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSN 239
AE+A+ MN MI+ + ++ + P L+ + +F+ NL N
Sbjct: 61 QPADAERALDTMNFDMIKGRPIRIMWSQ-----------RDPSLRKSGVGNVFIKNLDKN 109
Query: 240 INNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSK 292
I+N + F+ FG I S + D K GF+ F + A ++ +NG + K
Sbjct: 110 IDNKAMYDTFSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGK 167
>gi|405122394|gb|AFR97161.1| polyadenylate-binding protein [Cryptococcus neoformans var. grubii
H99]
Length = 670
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 90/311 (28%), Positives = 152/311 (48%), Gaps = 27/311 (8%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KG+ W + D R + N + + NL+ S+DN+AL + F FG +
Sbjct: 115 KGQSCRIMWSQ---RDPALRKTGQGN-------IFIKNLDQSIDNKALHDTFAAFGDILS 164
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V ++N +SRGFA + ++T A A +NG L+ K V +V G++ +
Sbjct: 165 CKVGTDENGKSRGFAFVHYSTGEAADAAIKAVNGMLLNDKKV---YVGHHVGKKERLSKV 221
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
EE + + V++KN+ V + E + FG I V + RDE G SKGFGF+ + +++
Sbjct: 222 EELRAQFTNVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRDEKGVSKGFGFVNYEHHES 281
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNK-------IFVANL 236
A KA+ E+N + + + A+ ++ ++K + +N+ +++ NL
Sbjct: 282 ARKAVDELNEKEVNGKKLYAGRAQTKSEREA--ELKKSHEEKRLENEAKSAGVNLYIKNL 339
Query: 237 PSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKS 291
++ F FGTITSS ++ D + GF+ + P AT AVS MNG + +
Sbjct: 340 DDEWDDDRLRAEFEAFGTITSSKVMRDDSGVSRGFGFVCYSSPDEATKAVSEMNGKMIGT 399
Query: 292 KPLKVTLSGTK 302
KPL V L+ K
Sbjct: 400 KPLYVALAQRK 410
Score = 107 bits (266), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 78/272 (28%), Positives = 130/272 (47%), Gaps = 20/272 (7%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+PSV L F G + +RV R+ S G+A + + A+ ++A +
Sbjct: 50 LYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEHL 109
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI + I + + P R G +F+KNL +++D + L F FG
Sbjct: 110 NYSLIKGQSCRIMWSQRDPALRKTGQG---------NIFIKNLDQSIDNKALHDTFAAFG 160
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
+I+ K+ DENGKS+GF F+ + + +AA+ AI +NG ++ +V V K+
Sbjct: 161 DILSCKVGTDENGKSRGFAFVHYSTGEAADAAIKAVNGMLLNDKKVYV--GHHVGKKERL 218
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIE 270
KV+ L+ A+ +++ N+ + ++EFE+L FG S +L D K GF+
Sbjct: 219 SKVEE--LR-AQFTNVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRDEKGVSKGFGFVN 275
Query: 271 FIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
+ + A AV +N K L + TK
Sbjct: 276 YEHHESARKAVDELNEKEVNGKKLYAGRAQTK 307
>gi|323305308|gb|EGA59055.1| Pab1p [Saccharomyces cerevisiae FostersB]
gi|323333819|gb|EGA75210.1| Pab1p [Saccharomyces cerevisiae AWRI796]
Length = 466
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 78/276 (28%), Positives = 141/276 (51%), Gaps = 13/276 (4%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL P +DN+AL + F FG + ++A ++N +S+GF + F AK+A +N
Sbjct: 17 IFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALN 76
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G L+ + + + L +R + EE + ++VKN+ +E+ + F KFG
Sbjct: 77 GMLLNGQEIYVA-PHLSRKERDSQL--EETKAHYTNLYVKNINSETTDEQFQELFAKFGP 133
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPG 211
I+ + +D +GK KGFGF+ + ++ A KA+ +N + +V A+ +
Sbjct: 134 IVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMHVL 193
Query: 212 KKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS-----DKHI 266
KK + + + + +FV NL ++++ + EE FA +GTITS+ ++ K
Sbjct: 194 KKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKSKGF 253
Query: 267 GFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ F P+ AT A++ N + KPL V ++ K
Sbjct: 254 GFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRK 289
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 100/192 (52%), Gaps = 10/192 (5%)
Query: 24 SNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFN 83
S E K + N L+V N+ ++ F KFG + + ++ + + +GF + +
Sbjct: 98 SQLEETKAHYTN-LYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYE 156
Query: 84 TPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDK--------VFV 135
+A KA +N + + + + + K +R + + + Y+ +K +FV
Sbjct: 157 KHEDAVKAVEALNDSELNGEKLYVGRAQ-KKNERMHVLKKQYEAYRLEKMAKYQGVNLFV 215
Query: 136 KNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRM 195
KNL ++VD+E+L+ F +G I K++R ENGKSKGFGF+ F + + A KAI E N ++
Sbjct: 216 KNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQI 275
Query: 196 IQHNSTFVSLAE 207
+ +V++A+
Sbjct: 276 VAGKPLYVAIAQ 287
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 52/88 (59%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L V NL+ SVD++ L EF +GT+ +V R +N +S+GF + F+TP EA KA
Sbjct: 208 YQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKA 267
Query: 92 RVEMNGHLIGSKPVIITFVELKPGQRSK 119
E N ++ KP+ + + K +RS+
Sbjct: 268 ITEKNQQIVAGKPLYVAIAQRKDVRRSQ 295
Score = 42.0 bits (97), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
Query: 219 KPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIM 273
+ P L+ IF+ NL +I+N + F+ FG I SS + +D K GF+ F
Sbjct: 5 RDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEE 64
Query: 274 PKHATHAVSTMNGHVFKSKPLKVT 297
A A+ +NG + + + V
Sbjct: 65 EGAAKEAIDALNGMLLNGQEIYVA 88
>gi|7239504|gb|AAF43230.1|AC012654_14 Identical to the polyadenylate-binding protein 5 (PAB5) from
Arabidopsis thaliana gb|M97657 [Arabidopsis thaliana]
Length = 668
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 75/262 (28%), Positives = 127/262 (48%), Gaps = 19/262 (7%)
Query: 30 KVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAK 89
+ + + L+V +L+PSV+ L++ F + + ++RV R+ S G+A + F P +A
Sbjct: 40 QTHPNSSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDAS 99
Query: 90 KARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKS 149
+A +N I +P+ I P R K VF+KNL ++D + L
Sbjct: 100 RAMESLNYAPIRDRPIRIMLSNRDPSTRLS---------GKGNVFIKNLDASIDNKALYE 150
Query: 150 HFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIV 209
F FG I+ K+ D G+SKG+GF+QF + A+ AI ++NG ++ FV
Sbjct: 151 TFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRR 210
Query: 210 PGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----K 264
+ P ++V NLP I + E ++ F ++G I+S+ ++ D +
Sbjct: 211 QDRARSESGAVPSF-----TNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSR 265
Query: 265 HIGFIEFIMPKHATHAVSTMNG 286
GF+ F+ P+ A AV MNG
Sbjct: 266 SFGFVNFVSPEAAAVAVEKMNG 287
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 80/291 (27%), Positives = 154/291 (52%), Gaps = 16/291 (5%)
Query: 24 SNKE-NNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVF 82
SN++ + ++ + + + NL+ S+DN+AL F FGT+ +VA + S+G+ + F
Sbjct: 120 SNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYGFVQF 179
Query: 83 NTPAEAKKARVEMNGHLIGSKPVIIT-FVELKPGQRSKPVGPEEKQYKKDKVFVKNLVET 141
A+ A ++NG L+ K V + FV + RS+ V+VKNL +
Sbjct: 180 EKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSE----SGAVPSFTNVYVKNLPKE 235
Query: 142 VDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNST 201
+ ++ELK F K+G+I +++D++G S+ FGF+ F S +AA A+ +MNG + +
Sbjct: 236 ITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVL 295
Query: 202 FVSLAEIVPGK-----KVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTIT 256
+V A+ + + F + + + + + +++ NL ++N+ + +E+F+ +G +T
Sbjct: 296 YVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLKEMFSEYGNVT 355
Query: 257 SSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
S ++ + + GF+ + P+ A A+ MNG + KPL V L+ K
Sbjct: 356 SCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALAQRK 406
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 100/199 (50%), Gaps = 21/199 (10%)
Query: 23 RSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVF 82
R+ E+ V ++V NL + + L F K+G + V ++++ SR F + F
Sbjct: 213 RARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNF 272
Query: 83 NTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKK------------ 130
+P A A +MNG +G + + G+ K EE+ +K
Sbjct: 273 VSPEAAAVAVEKMNGISLGEDVLYV-------GRAQKKSDREEELRRKFEQERISRFEKL 325
Query: 131 --DKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAI 188
+++KNL ++V++E+LK F ++GN+ K++ + G S+GFGF+ + + + A A+
Sbjct: 326 QGSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAM 385
Query: 189 IEMNGRMIQHNSTFVSLAE 207
EMNG+MI +V+LA+
Sbjct: 386 KEMNGKMIGRKPLYVALAQ 404
>gi|255940906|ref|XP_002561222.1| Pc16g09030 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211585845|emb|CAP93573.1| Pc16g09030 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 734
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 85/283 (30%), Positives = 135/283 (47%), Gaps = 25/283 (8%)
Query: 22 ARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAII 80
A + NN+ + + L+V L+PSV L F G + +RV R+ S G+A +
Sbjct: 33 AAGDAANNQPHSAS-LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYV 91
Query: 81 VFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVE 140
+N A+ ++A ++N LI KP I + + P R G VF+KNL
Sbjct: 92 NYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQG---------NVFIKNLDN 142
Query: 141 TVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNS 200
+D + L F FGNI+ K+ +DE SKG+GF+ + + +AA AI +NG ++
Sbjct: 143 AIDNKALHDTFAAFGNILSCKVAQDEFANSKGYGFVHYETAEAANNAIKHVNGMLLNDKK 202
Query: 201 TFVSLAEIVPGKKVFPKVKPPLLQPARKN--KIFVANLPSNINNSEFEELFARFGTITSS 258
FV G + K + + + N I++ N+ I + EF +F FG ITS+
Sbjct: 203 VFV-------GHHISKKDRQSKFEEMKANFTNIYIKNIDLEITDDEFRTMFEAFGEITSA 255
Query: 259 SLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
+L D + GF+ + + A AV+ MN KS+ L V
Sbjct: 256 TLSHDQDGKSRGFGFVNYANHESAEAAVAEMNEKEVKSQKLYV 298
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 70/265 (26%), Positives = 138/265 (52%), Gaps = 18/265 (6%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK W + D R + N + + NL+ ++DN+AL + F FG +
Sbjct: 112 KGKPCRIMWSQ---RDPALRKTGQGN-------VFIKNLDNAIDNKALHDTFAAFGNILS 161
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+VA+++ S+G+ + + T A A +NG L+ K V + K ++SK
Sbjct: 162 CKVAQDEFANSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKF--- 218
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
EE + +++KN+ + ++E ++ F FG I + D++GKS+GFGF+ + ++++
Sbjct: 219 EEMKANFTNIYIKNIDLEITDDEFRTMFEAFGEITSATLSHDQDGKSRGFGFVNYANHES 278
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAEIVPGK--KVFPKVKPPLLQPARKNK---IFVANLPS 238
AE A+ EMN + ++ +V A+ + ++ + + ++ A K + ++V NL
Sbjct: 279 AEAAVAEMNEKEVKSQKLYVGRAQKKHEREEELRKQYEAARMEKASKYQGVNLYVKNLTD 338
Query: 239 NINNSEFEELFARFGTITSSSLVSD 263
+I++ + +LF +GTITS+ ++ D
Sbjct: 339 DIDDEKLRDLFTPYGTITSAKVMRD 363
Score = 45.8 bits (107), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 27/40 (67%)
Query: 168 GKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
GKSKGFGF+ F S A KA+ EMN RM+ +V+LA+
Sbjct: 424 GKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQ 463
Score = 41.6 bits (96), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 28/46 (60%)
Query: 74 SRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSK 119
S+GF + F++P EA KA EMN ++ KP+ + + K +RS+
Sbjct: 426 SKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQ 471
>gi|321261800|ref|XP_003195619.1| polyadenylate-binding protein [Cryptococcus gattii WM276]
gi|317462093|gb|ADV23832.1| polyadenylate-binding protein, putative [Cryptococcus gattii WM276]
Length = 675
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 90/311 (28%), Positives = 154/311 (49%), Gaps = 27/311 (8%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KG+ W + D R + N + + NL+ S+DN+AL + F FG +
Sbjct: 115 KGQSCRIMWSQ---RDPALRKTGQGN-------IFIKNLDQSIDNKALHDTFAAFGDILS 164
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V ++N +SRGFA + ++T A A +NG L+ K V +V G++ +
Sbjct: 165 CKVGTDENGKSRGFAFVHYSTGEAADAAIKAVNGMLLNDKKV---YVGHHVGKKERLSKV 221
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
EE + + V++KN+ V + E + FG I V + RDE G SKGFGF+ + ++++
Sbjct: 222 EELRAQFTNVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRDEQGVSKGFGFVNYENHES 281
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNK-------IFVANL 236
A++A+ E+N + I + A+ ++ ++K + +N+ +++ NL
Sbjct: 282 AKQAVDELNEKEINGKKLYAGRAQTKSEREA--ELKKSHEEKRIENEAKSAGVNLYIKNL 339
Query: 237 PSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKS 291
++ F FGTITSS ++ D + GF+ + P AT AVS MNG + +
Sbjct: 340 DDEWDDDRLRAEFEAFGTITSSKVMRDDSGVSRGFGFVCYSSPDEATKAVSEMNGKMIGT 399
Query: 292 KPLKVTLSGTK 302
KPL V L+ K
Sbjct: 400 KPLYVALAQRK 410
Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 78/272 (28%), Positives = 130/272 (47%), Gaps = 20/272 (7%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+PSV L F G + +RV R+ S G+A + + A+ ++A +
Sbjct: 50 LYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEHL 109
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI + I + + P R G +F+KNL +++D + L F FG
Sbjct: 110 NYSLIKGQSCRIMWSQRDPALRKTGQG---------NIFIKNLDQSIDNKALHDTFAAFG 160
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
+I+ K+ DENGKS+GF F+ + + +AA+ AI +NG ++ +V V K+
Sbjct: 161 DILSCKVGTDENGKSRGFAFVHYSTGEAADAAIKAVNGMLLNDKKVYV--GHHVGKKERL 218
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIE 270
KV+ L+ A+ +++ N+ + ++EFE+L FG S +L D K GF+
Sbjct: 219 SKVEE--LR-AQFTNVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRDEQGVSKGFGFVN 275
Query: 271 FIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
+ + A AV +N K L + TK
Sbjct: 276 YENHESAKQAVDELNEKEINGKKLYAGRAQTK 307
>gi|365985359|ref|XP_003669512.1| hypothetical protein NDAI_0C06100 [Naumovozyma dairenensis CBS 421]
gi|343768280|emb|CCD24269.1| hypothetical protein NDAI_0C06100 [Naumovozyma dairenensis CBS 421]
Length = 585
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 86/310 (27%), Positives = 152/310 (49%), Gaps = 25/310 (8%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KG++ W + D R N + + NL +DN+AL + F FG +
Sbjct: 107 KGRLCRIMWSQ---RDPALRKKGSAN-------IFIKNLHSDIDNKALYDTFSVFGNILS 156
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
++A ++ +S+GF + F AK+A +NG L+ + + FV ++ +
Sbjct: 157 SKIATDETGKSKGFGFVHFEDDTAAKEAIDALNGMLLNGQEI---FVGPHLSRKERDSQL 213
Query: 124 EEKQYKKDKVFVKNL-VETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYK 182
EE + ++VKN+ +ET DEE F K+G ++ + + E+GK KGFGF+ F +++
Sbjct: 214 EESKANFTNIYVKNINLETTDEE-FTELFSKYGKVLSAALEKTEDGKLKGFGFVDFENHE 272
Query: 183 AAEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLP 237
A KA+ E+NG + FVS A+ + KK + + + + +F+ NL
Sbjct: 273 DAAKAVEELNGSQFKDQELFVSRAQKKYERMQELKKQYEASRLEKMAKYQGVNLFIKNLD 332
Query: 238 SNINNSEFEELFARFGTITSSSLVS-----DKHIGFIEFIMPKHATHAVSTMNGHVFKSK 292
+I++ + +E FA +G ITS ++ + GF+ F P+ AT A++ N + K
Sbjct: 333 DSIDDEKLKEEFAPYGNITSVRVMRTENGKSRGFGFVCFSTPEEATKAITEKNQQIVAGK 392
Query: 293 PLKVTLSGTK 302
PL V ++ K
Sbjct: 393 PLYVAIAQRK 402
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 88/274 (32%), Positives = 135/274 (49%), Gaps = 24/274 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L+PSV L + F G++ +RV R+ S G+A + FN KKA ++
Sbjct: 42 LYVGDLDPSVSEALLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGKKAIEKL 101
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N I + I + + P R K +F+KNL +D + L F FG
Sbjct: 102 NYTPIKGRLCRIMWSQRDPALRKKGSA---------NIFIKNLHSDIDNKALYDTFSVFG 152
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ KI DE GKSKGFGF+ F AA++AI +NG ++ FV G +
Sbjct: 153 NILSSKIATDETGKSKGFGFVHFEDDTAAKEAIDALNGMLLNGQEIFV-------GPHLS 205
Query: 216 PKVKPPLLQPARKN--KIFVANLPSNINNSEFEELFARFGTITSSSL--VSD---KHIGF 268
K + L+ ++ N I+V N+ + EF ELF+++G + S++L D K GF
Sbjct: 206 RKERDSQLEESKANFTNIYVKNINLETTDEEFTELFSKYGKVLSAALEKTEDGKLKGFGF 265
Query: 269 IEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
++F + A AV +NG FK + L V+ + K
Sbjct: 266 VDFENHEDAAKAVEELNGSQFKDQELFVSRAQKK 299
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 52/88 (59%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L + NL+ S+D++ L EF +G + VRV R +N +SRGF + F+TP EA KA
Sbjct: 321 YQGVNLFIKNLDDSIDDEKLKEEFAPYGNITSVRVMRTENGKSRGFGFVCFSTPEEATKA 380
Query: 92 RVEMNGHLIGSKPVIITFVELKPGQRSK 119
E N ++ KP+ + + K +RS+
Sbjct: 381 ITEKNQQIVAGKPLYVAIAQRKDVRRSQ 408
>gi|345561329|gb|EGX44424.1| hypothetical protein AOL_s00193g6 [Arthrobotrys oligospora ATCC
24927]
Length = 744
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 78/245 (31%), Positives = 121/245 (49%), Gaps = 27/245 (11%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+PSV L F G + +RV R+ S G+A + +N A+ ++A E+
Sbjct: 53 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEEL 112
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI +P I + + P R G VF+KNL +D + L F FG
Sbjct: 113 NYTLIKGRPCRIMWSQRDPALRKTGHG---------NVFIKNLDIAIDNKALHDTFAAFG 163
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKV- 214
NI+ K+ +DENG SKG+GF+ + + +AA AI +NG ++ +V +P K+
Sbjct: 164 NILSCKVAQDENGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVYV--GHHIPKKERQ 221
Query: 215 --FPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHI 266
F ++K A ++V N+ +++ EF LF FG ITS+SL D +
Sbjct: 222 SKFDEMK------ANFTNVYVKNIDPEVSDDEFRTLFENFGQITSASLARDGDSGTSRGF 275
Query: 267 GFIEF 271
GF+ F
Sbjct: 276 GFVNF 280
Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 81/300 (27%), Positives = 146/300 (48%), Gaps = 39/300 (13%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ ++DN+AL + F FG + +VA+++N S+G+ + + T A A +NG
Sbjct: 143 IKNLDIAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYETAEAATNAIKHVNGM 202
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ K V + K ++SK +E + V+VKN+ V ++E ++ F FG I
Sbjct: 203 LLNEKKVYVGHHIPKKERQSKF---DEMKANFTNVYVKNIDPEVSDDEFRTLFENFGQIT 259
Query: 159 EVKIVRD-ENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKK--VF 215
+ RD ++G S+GFGF+ F S++AA A+ ++ ++ + FV A+ ++ +
Sbjct: 260 SASLARDGDSGTSRGFGFVNFSSHEAAAAAVDALHETELKGQALFVGRAQKKHEREEELR 319
Query: 216 PKVKPPLLQPARKNK---IFVANLPSNINNSEFEELFARFGTITSSSLVSD--------- 263
+ + ++ A K + ++V NL I++ + F+ +GTITS+ ++ D
Sbjct: 320 KQYEAARIEKASKYQGVNLYVKNLDDEIDDERLRQEFSPYGTITSAKVMRDSLDSPKEKD 379
Query: 264 ---------------------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
K GF+ F P A+ AV+ MN + KPL V L+ K
Sbjct: 380 GEESKVGEPEEKATDKKQGKSKGFGFVCFSNPDEASKAVAEMNQRMVNGKPLYVALAQRK 439
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 96/208 (46%), Gaps = 41/208 (19%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKND-ESRGFAIIVFNTPAEAKKARVEM 95
++V N++P V + F+ FG + +AR+ + SRGF + F++ A A +
Sbjct: 234 VYVKNIDPEVSDDEFRTLFENFGQITSASLARDGDSGTSRGFGFVNFSSHEAAAAAVDAL 293
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKV-----------FVKNLVETVDE 144
+ + + + + + K +R + + KQY+ ++ +VKNL + +D+
Sbjct: 294 HETELKGQALFVGRAQKK-HEREEEL---RKQYEAARIEKASKYQGVNLYVKNLDDEIDD 349
Query: 145 EELKSHFIKFGNIIEVKIVRD-------------------------ENGKSKGFGFIQFF 179
E L+ F +G I K++RD + GKSKGFGF+ F
Sbjct: 350 ERLRQEFSPYGTITSAKVMRDSLDSPKEKDGEESKVGEPEEKATDKKQGKSKGFGFVCFS 409
Query: 180 SYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
+ A KA+ EMN RM+ +V+LA+
Sbjct: 410 NPDEASKAVAEMNQRMVNGKPLYVALAQ 437
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 52/113 (46%), Gaps = 25/113 (22%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARN---------------------- 69
Y+ L+V NL+ +D++ L EF +GT+ +V R+
Sbjct: 333 YQGVNLYVKNLDDEIDDERLRQEFSPYGTITSAKVMRDSLDSPKEKDGEESKVGEPEEKA 392
Query: 70 ---KNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSK 119
K +S+GF + F+ P EA KA EMN ++ KP+ + + K ++S+
Sbjct: 393 TDKKQGKSKGFGFVCFSNPDEASKAVAEMNQRMVNGKPLYVALAQRKDVRKSQ 445
>gi|336364894|gb|EGN93247.1| hypothetical protein SERLA73DRAFT_172163 [Serpula lacrymans var.
lacrymans S7.3]
Length = 684
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 78/276 (28%), Positives = 145/276 (52%), Gaps = 13/276 (4%)
Query: 34 ENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARV 93
+ + + NL+ +DN+AL + F FG + +VA +++ S+G+ + + T A+ A
Sbjct: 131 QGNIFIKNLDEQIDNKALHDTFAAFGNVLSCKVATDEHGRSKGYGFVHYETGEAAETAIK 190
Query: 94 EMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIK 153
+NG L+ K V + + + ++SK +E + + +++KNL +V ++E + F K
Sbjct: 191 AVNGMLLNDKKVYVGYHISRKERQSK---LDEMKAQFTNLYIKNLDTSVTQDEFEEMFQK 247
Query: 154 FGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPG-- 211
+GN+ + DE G SKGFGF+ + ++ A+ A+ ++ I+ FVS A+
Sbjct: 248 YGNVTSAIVQVDEEGNSKGFGFVNYEHHEEAQSAVDALHDTDIRGKKLFVSRAQKKAERE 307
Query: 212 ---KKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----- 263
++ + + K L + +++ NL ++++ + F FGTITS ++ D
Sbjct: 308 EELRRSYEQAKMEKLSKYQGVNLYIKNLEDDVDDEKLRAEFEPFGTITSCKVMRDDKSTS 367
Query: 264 KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299
K GF+ F P AT AV+ MN + SKPL V+L+
Sbjct: 368 KGFGFVCFSSPDEATKAVAEMNNKMIGSKPLYVSLA 403
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 74/269 (27%), Positives = 133/269 (49%), Gaps = 24/269 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+P+V L F G + +RV R+ S G+A + + ++ ++A ++
Sbjct: 46 LYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNTSDGERALEQL 105
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI ++ I + + P R G +F+KNL E +D + L F FG
Sbjct: 106 NYSLIKNRACRIMWSQRDPALRKTGQG---------NIFIKNLDEQIDNKALHDTFAAFG 156
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
N++ K+ DE+G+SKG+GF+ + + +AAE AI +NG ++ +V G +
Sbjct: 157 NVLSCKVATDEHGRSKGYGFVHYETGEAAETAIKAVNGMLLNDKKVYV-------GYHIS 209
Query: 216 PKVKPPLLQP--ARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGF 268
K + L A+ +++ NL +++ EFEE+F ++G +TS+ + D K GF
Sbjct: 210 RKERQSKLDEMKAQFTNLYIKNLDTSVTQDEFEEMFQKYGNVTSAIVQVDEEGNSKGFGF 269
Query: 269 IEFIMPKHATHAVSTMNGHVFKSKPLKVT 297
+ + + A AV ++ + K L V+
Sbjct: 270 VNYEHHEEAQSAVDALHDTDIRGKKLFVS 298
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 95/179 (53%), Gaps = 9/179 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L++ NL+ SV F+K+G + V ++ S+GF + + EA+ A ++
Sbjct: 227 LYIKNLDTSVTQDEFEEMFQKYGNVTSAIVQVDEEGNSKGFGFVNYEHHEEAQSAVDALH 286
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKV--------FVKNLVETVDEEELK 148
I K + ++ + K +R + + +Q K +K+ ++KNL + VD+E+L+
Sbjct: 287 DTDIRGKKLFVSRAQKK-AEREEELRRSYEQAKMEKLSKYQGVNLYIKNLEDDVDDEKLR 345
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
+ F FG I K++RD+ SKGFGF+ F S A KA+ EMN +MI +VSLA+
Sbjct: 346 AEFEPFGTITSCKVMRDDKSTSKGFGFVCFSSPDEATKAVAEMNNKMIGSKPLYVSLAQ 404
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 54/88 (61%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L++ NLE VD++ L EF+ FGT+ +V R+ S+GF + F++P EA KA
Sbjct: 325 YQGVNLYIKNLEDDVDDEKLRAEFEPFGTITSCKVMRDDKSTSKGFGFVCFSSPDEATKA 384
Query: 92 RVEMNGHLIGSKPVIITFVELKPGQRSK 119
EMN +IGSKP+ ++ + + +R +
Sbjct: 385 VAEMNNKMIGSKPLYVSLAQRREVRRQQ 412
>gi|448519634|ref|XP_003868121.1| poly(A)-binding protein [Candida orthopsilosis Co 90-125]
gi|380352460|emb|CCG22686.1| poly(A)-binding protein [Candida orthopsilosis]
Length = 638
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 87/294 (29%), Positives = 148/294 (50%), Gaps = 20/294 (6%)
Query: 19 DEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFA 78
D AR + + N + + NL P++DN+AL + F FG + +VA + +S+ F
Sbjct: 140 DPSARRSGDGN-------IFIKNLHPAIDNKALHDTFSAFGRILSCKVATDDLGQSKCFG 192
Query: 79 IIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNL 138
+ + T A+ A +NG L+ + V + K + SK EE + ++VKN+
Sbjct: 193 FVHYETAEAAEAAIENVNGMLLNDREVYVGKHVSKKDRESKF---EEMKANYTNIYVKNI 249
Query: 139 VETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQH 198
E+E + F +G I + + +D++GKSKGFGF+ + +K+A +A+ +N + I
Sbjct: 250 DLEFSEKEFEDLFAPYGKITSIYLEKDQDGKSKGFGFVNYEEHKSAVEAVEALNDKEING 309
Query: 199 NSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFG 253
+V A+ KK + ++ L + +FV NL I++ + EE F FG
Sbjct: 310 QKIYVGRAQKKRERTEELKKQYEAIRLEKLSKYQGVNLFVKNLDDQIDSEKLEEEFKPFG 369
Query: 254 TITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
TITS+ ++ D + GF+ F P+ AT A++ MN + KPL V L+ K
Sbjct: 370 TITSAKVMVDDAGKSRGFGFVCFSTPEEATKAITEMNQRMVNGKPLYVALAQRK 423
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 80/257 (31%), Positives = 125/257 (48%), Gaps = 24/257 (9%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L PSV+ L F G + +RV R+ + +S G+A + ++ + +KA E+
Sbjct: 63 LYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKFEDGEKAIDEL 122
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI ++P I + + P R G +F+KNL +D + L F FG
Sbjct: 123 NYSLIENRPCRIMWSQRDPSARRSGDG---------NIFIKNLHPAIDNKALHDTFSAFG 173
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
I+ K+ D+ G+SK FGF+ + + +AAE AI +NG ++ +V GK V
Sbjct: 174 RILSCKVATDDLGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVYV-------GKHVS 226
Query: 216 PKVKPPLLQPARKN--KIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGF 268
K + + + N I+V N+ + EFE+LFA +G ITS L D K GF
Sbjct: 227 KKDRESKFEEMKANYTNIYVKNIDLEFSEKEFEDLFAPYGKITSIYLEKDQDGKSKGFGF 286
Query: 269 IEFIMPKHATHAVSTMN 285
+ + K A AV +N
Sbjct: 287 VNYEEHKSAVEAVEALN 303
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 51/88 (57%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L V NL+ +D++ L EFK FGT+ +V + +SRGF + F+TP EA KA
Sbjct: 342 YQGVNLFVKNLDDQIDSEKLEEEFKPFGTITSAKVMVDDAGKSRGFGFVCFSTPEEATKA 401
Query: 92 RVEMNGHLIGSKPVIITFVELKPGQRSK 119
EMN ++ KP+ + + K +RS+
Sbjct: 402 ITEMNQRMVNGKPLYVALAQRKDVRRSQ 429
>gi|401625965|gb|EJS43937.1| pab1p [Saccharomyces arboricola H-6]
Length = 577
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 83/309 (26%), Positives = 151/309 (48%), Gaps = 23/309 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KG++ W + D R N + + NL P +DN+AL + F FG +
Sbjct: 105 KGRLCRIMWSQ---RDPSLRKKGSGN-------IFIKNLHPDIDNKALYDTFSVFGDILS 154
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
++A ++N +S+GF + F AK+A +NG L+ + + + L +R +
Sbjct: 155 SKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVA-PHLSRKERDSQL-- 211
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
EE + ++VKN+ +E+ + F +FG I+ + +D +GK KGFGF+ + +++
Sbjct: 212 EETKAHYTNLYVKNINSETTDEKFQEMFAQFGPIVSASLEKDADGKLKGFGFVNYENHED 271
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A KA+ +N + +V A+ + KK + + + + +FV NL
Sbjct: 272 AVKAVEALNESDLNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDD 331
Query: 239 NINNSEFEELFARFGTITSSSLVS-----DKHIGFIEFIMPKHATHAVSTMNGHVFKSKP 293
++++ + EE FA +GTITS+ ++ K GF+ F P+ AT A++ N + KP
Sbjct: 332 SVDDEKLEEEFAPYGTITSAKVMRSENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKP 391
Query: 294 LKVTLSGTK 302
L V ++ K
Sbjct: 392 LYVAIAQRK 400
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 81/257 (31%), Positives = 127/257 (49%), Gaps = 24/257 (9%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +LEP+V L + F G++ +RV R+ S G+A + FN +KA ++
Sbjct: 40 LYVGDLEPTVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIDQL 99
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N I + I + + P R K G +F+KNL +D + L F FG
Sbjct: 100 NYTPIKGRLCRIMWSQRDPSLRKKGSG---------NIFIKNLHPDIDNKALYDTFSVFG 150
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
+I+ KI DENGKSKGFGF+ F AA++AI +NG ++ +V+ +
Sbjct: 151 DILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVA-------PHLS 203
Query: 216 PKVKPPLLQP--ARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGF 268
K + L+ A ++V N+ S + +F+E+FA+FG I S+SL D K GF
Sbjct: 204 RKERDSQLEETKAHYTNLYVKNINSETTDEKFQEMFAQFGPIVSASLEKDADGKLKGFGF 263
Query: 269 IEFIMPKHATHAVSTMN 285
+ + + A AV +N
Sbjct: 264 VNYENHEDAVKAVEALN 280
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 53/88 (60%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L V NL+ SVD++ L EF +GT+ +V R++N +S+GF + F+TP EA KA
Sbjct: 319 YQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRSENGKSKGFGFVCFSTPEEATKA 378
Query: 92 RVEMNGHLIGSKPVIITFVELKPGQRSK 119
E N ++ KP+ + + K +RS+
Sbjct: 379 ITEKNQQIVAGKPLYVAIAQRKDVRRSQ 406
>gi|115452253|ref|NP_001049727.1| Os03g0278500 [Oryza sativa Japonica Group]
gi|108707490|gb|ABF95285.1| polyadenylate binding protein, types 1, 2, 3, 4 family protein,
expressed [Oryza sativa Japonica Group]
gi|113548198|dbj|BAF11641.1| Os03g0278500 [Oryza sativa Japonica Group]
gi|215678518|dbj|BAG92173.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222624669|gb|EEE58801.1| hypothetical protein OsJ_10348 [Oryza sativa Japonica Group]
Length = 647
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 81/275 (29%), Positives = 143/275 (52%), Gaps = 18/275 (6%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN-G 97
V NL VDN +L F KFG + +VA+N++ SRG+ + F A + +N
Sbjct: 130 VKNLNDLVDNVSLQELFCKFGDILSCKVAKNEDGTSRGYGFVQFALQESADASIQNLNNS 189
Query: 98 HLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNI 157
H G + + TF+ K +RS K +++KNL + + EE +K F ++G +
Sbjct: 190 HFCGRQLHVATFI--KKSERST-----NNDDKYTNLYMKNLDDDITEELIKLKFSQYGLV 242
Query: 158 IEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPK 217
I VKI++ ++G SKGFGF+ F + ++A++A MNG ++ + +V+ A+ +K + +
Sbjct: 243 ISVKIMKRDDGTSKGFGFVSFQNPESAKRAKESMNGMLLGSKTLYVARAQKKAERKQYLQ 302
Query: 218 V-----KPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIG 267
+ ++ + + +++ N+ + + E F FG ITS+ ++ D K G
Sbjct: 303 RLHEEKRNEIITKSNGSNVYIKNINDEVGDDALRERFNEFGNITSAKIMRDEKGISKGFG 362
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F+ + P+ A AVS M G +F KPL V ++ K
Sbjct: 363 FVCYNTPEEAKCAVSNMRGVMFYGKPLYVAIAQRK 397
Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 81/272 (29%), Positives = 132/272 (48%), Gaps = 33/272 (12%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVAR-NKNDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L SV + L+ F K GTL VRV R N S + + + + A+A A ++
Sbjct: 40 LYVGDLHESVREEHLLEVFGKIGTLTSVRVCRDNATSNSLRYGYVNYLSQADAAIALEKL 99
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI KP+ + + P R VG VFVKNL + VD L+ F KFG
Sbjct: 100 NHSLILDKPIRVMWSNRDPDARRSGVG---------NVFVKNLNDLVDNVSLQELFCKFG 150
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMN-----GRMIQHNSTFVSLAEIVP 210
+I+ K+ ++E+G S+G+GF+QF ++A+ +I +N GR + H +TF+ +E
Sbjct: 151 DILSCKVAKNEDGTSRGYGFVQFALQESADASIQNLNNSHFCGRQL-HVATFIKKSERST 209
Query: 211 GKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLV-----SDKH 265
+ +++ NL +I + F+++G + S ++ + K
Sbjct: 210 NND------------DKYTNLYMKNLDDDITEELIKLKFSQYGLVISVKIMKRDDGTSKG 257
Query: 266 IGFIEFIMPKHATHAVSTMNGHVFKSKPLKVT 297
GF+ F P+ A A +MNG + SK L V
Sbjct: 258 FGFVSFQNPESAKRAKESMNGMLLGSKTLYVA 289
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 102/201 (50%), Gaps = 25/201 (12%)
Query: 23 RSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVF 82
+S + N K L++ NL+ + + + +F ++G + V++ + + S+GF + F
Sbjct: 204 KSERSTNNDDKYTNLYMKNLDDDITEELIKLKFSQYGLVISVKIMKRDDGTSKGFGFVSF 263
Query: 83 NTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKK------------ 130
P AK+A+ MNG L+GSK + + + K E KQY +
Sbjct: 264 QNPESAKRAKESMNGMLLGSKTLYVARAQKKA---------ERKQYLQRLHEEKRNEIIT 314
Query: 131 ----DKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEK 186
V++KN+ + V ++ L+ F +FGNI KI+RDE G SKGFGF+ + + + A+
Sbjct: 315 KSNGSNVYIKNINDEVGDDALRERFNEFGNITSAKIMRDEKGISKGFGFVCYNTPEEAKC 374
Query: 187 AIIEMNGRMIQHNSTFVSLAE 207
A+ M G M +V++A+
Sbjct: 375 AVSNMRGVMFYGKPLYVAIAQ 395
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 2/96 (2%)
Query: 26 KENNKVYKEN--ELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFN 83
K N + K N +++ N+ V + AL F +FG + ++ R++ S+GF + +N
Sbjct: 308 KRNEIITKSNGSNVYIKNINDEVGDDALRERFNEFGNITSAKIMRDEKGISKGFGFVCYN 367
Query: 84 TPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSK 119
TP EAK A M G + KP+ + + K +R+K
Sbjct: 368 TPEEAKCAVSNMRGVMFYGKPLYVAIAQRKEERRAK 403
>gi|365760982|gb|EHN02660.1| Pab1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 466
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 77/276 (27%), Positives = 142/276 (51%), Gaps = 13/276 (4%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL P +DN+AL + F FG + ++A ++N +S+GF + F AK+A +N
Sbjct: 17 IFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALN 76
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G L+ + + + L +R + EE + ++VKN+ +E+ + FI+FG
Sbjct: 77 GMLLNGQEIYVA-PHLSRKERDSQL--EETKAHYTNLYVKNINSETTDEQFQDLFIQFGP 133
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPG 211
I+ + +D +GK KGFGF+ + +++ A KA+ +N + +V A+ +
Sbjct: 134 IVSASLEKDADGKLKGFGFVNYENHEDAVKAVEALNESDLNGEKLYVGRAQKKNERMHVL 193
Query: 212 KKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS-----DKHI 266
KK + + + + +FV NL ++++ + EE F +GTITS+ ++ K
Sbjct: 194 KKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFTPYGTITSAKVMRTENGKSKGF 253
Query: 267 GFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ F P+ AT A++ N + KPL V ++ K
Sbjct: 254 GFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRK 289
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 101/192 (52%), Gaps = 10/192 (5%)
Query: 24 SNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFN 83
S E K + N L+V N+ ++ + F +FG + + ++ + + +GF + +
Sbjct: 98 SQLEETKAHYTN-LYVKNINSETTDEQFQDLFIQFGPIVSASLEKDADGKLKGFGFVNYE 156
Query: 84 TPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDK--------VFV 135
+A KA +N + + + + + K +R + + + Y+ +K +FV
Sbjct: 157 NHEDAVKAVEALNESDLNGEKLYVGRAQ-KKNERMHVLKKQYEAYRLEKMAKYQGVNLFV 215
Query: 136 KNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRM 195
KNL ++VD+E+L+ F +G I K++R ENGKSKGFGF+ F + + A KAI E N ++
Sbjct: 216 KNLDDSVDDEKLEEEFTPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQI 275
Query: 196 IQHNSTFVSLAE 207
+ +V++A+
Sbjct: 276 VAGKPLYVAIAQ 287
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 52/88 (59%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L V NL+ SVD++ L EF +GT+ +V R +N +S+GF + F+TP EA KA
Sbjct: 208 YQGVNLFVKNLDDSVDDEKLEEEFTPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKA 267
Query: 92 RVEMNGHLIGSKPVIITFVELKPGQRSK 119
E N ++ KP+ + + K +RS+
Sbjct: 268 ITEKNQQIVAGKPLYVAIAQRKDVRRSQ 295
Score = 42.0 bits (97), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
Query: 219 KPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIM 273
+ P L+ IF+ NL +I+N + F+ FG I SS + +D K GF+ F
Sbjct: 5 RDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEE 64
Query: 274 PKHATHAVSTMNGHVFKSKPLKVT 297
A A+ +NG + + + V
Sbjct: 65 EGAAKEAIDALNGMLLNGQEIYVA 88
>gi|297851860|ref|XP_002893811.1| PAB1 binding protein 1 [Arabidopsis lyrata subsp. lyrata]
gi|297339653|gb|EFH70070.1| PAB1 binding protein 1 [Arabidopsis lyrata subsp. lyrata]
Length = 403
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 87/276 (31%), Positives = 143/276 (51%), Gaps = 21/276 (7%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
V NL+ S+DN+ L + F FG + +V R+ + S+G+ + F + A NG
Sbjct: 35 VKNLDESIDNKQLSDMFSAFGKVLSCKVVRDASGVSKGYGFVQFYSELSVNIACNVRNGT 94
Query: 99 LIGSKPVIIT-FVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNI 157
LI ++ + ++ FV + S+ V+VKNL ET +++LK F +FG I
Sbjct: 95 LIRNQHIHVSPFVSRRQWDESRVF---------TNVYVKNLAETTTDDDLKMIFEEFGEI 145
Query: 158 IEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPGK 212
+++D+ GKS+ FGF+ F +AA AI +MNG ++ V A+ I K
Sbjct: 146 TSAVVMKDKEGKSRMFGFVNFEKAEAAVTAIDKMNGTIVDEKELHVGRAQRKKNRIQDLK 205
Query: 213 KVFPKVKPPLLQPARK-NKIFVANLPSNINNSEFEELFARFGTITSSSLVS-----DKHI 266
+F K RK ++V NL +++N++ +ELF+ FGTI S ++ K +
Sbjct: 206 VIFKLEKIKRDMKTRKGTNLYVKNLDYSVDNTKLQELFSEFGTIISCKVMVHPNRISKGV 265
Query: 267 GFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+EF + A+ A+ MNG V +KP+ V+L+ K
Sbjct: 266 GFVEFSTSEEASKAMLKMNGKVVGNKPIYVSLAQCK 301
Score = 94.0 bits (232), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 67/211 (31%), Positives = 101/211 (47%), Gaps = 32/211 (15%)
Query: 95 MNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKF 154
+N + + KP+ I F E P +R G VFVKNL E++D ++L F F
Sbjct: 4 LNFYKLKGKPMRIMFSERDPSKRLSGRG---------NVFVKNLDESIDNKQLSDMFSAF 54
Query: 155 GNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQ----HNSTFVSLAEIVP 210
G ++ K+VRD +G SKG+GF+QF+S + A NG +I+ H S FVS +
Sbjct: 55 GKVLSCKVVRDASGVSKGYGFVQFYSELSVNIACNVRNGTLIRNQHIHVSPFVSRRQW-D 113
Query: 211 GKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKH----- 265
+VF ++V NL + + + +F FG ITS+ ++ DK
Sbjct: 114 ESRVF-------------TNVYVKNLAETTTDDDLKMIFEEFGEITSAVVMKDKEGKSRM 160
Query: 266 IGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
GF+ F + A A+ MNG + K L V
Sbjct: 161 FGFVNFEKAEAAVTAIDKMNGTIVDEKELHV 191
Score = 80.9 bits (198), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 102/195 (52%), Gaps = 10/195 (5%)
Query: 22 ARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIV 81
+R + ++V+ ++V NL + + L F++FG + V ++K +SR F +
Sbjct: 108 SRRQWDESRVF--TNVYVKNLAETTTDDDLKMIFEEFGEITSAVVMKDKEGKSRMFGFVN 165
Query: 82 FNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQ--------RSKPVGPEEKQYKKDKV 133
F A A +MNG ++ K + + + K + + + + + K K +
Sbjct: 166 FEKAEAAVTAIDKMNGTIVDEKELHVGRAQRKKNRIQDLKVIFKLEKIKRDMKTRKGTNL 225
Query: 134 FVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNG 193
+VKNL +VD +L+ F +FG II K++ N SKG GF++F + + A KA+++MNG
Sbjct: 226 YVKNLDYSVDNTKLQELFSEFGTIISCKVMVHPNRISKGVGFVEFSTSEEASKAMLKMNG 285
Query: 194 RMIQHNSTFVSLAEI 208
+++ + +VSLA+
Sbjct: 286 KVVGNKPIYVSLAQC 300
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 52/88 (59%)
Query: 26 KENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTP 85
K + K K L+V NL+ SVDN L F +FGT+ +V + N S+G + F+T
Sbjct: 214 KRDMKTRKGTNLYVKNLDYSVDNTKLQELFSEFGTIISCKVMVHPNRISKGVGFVEFSTS 273
Query: 86 AEAKKARVEMNGHLIGSKPVIITFVELK 113
EA KA ++MNG ++G+KP+ ++ + K
Sbjct: 274 EEASKAMLKMNGKVVGNKPIYVSLAQCK 301
>gi|359322009|ref|XP_850457.3| PREDICTED: uncharacterized protein LOC483825 [Canis lupus
familiaris]
Length = 1009
Score = 122 bits (307), Expect = 2e-25, Method: Composition-based stats.
Identities = 76/274 (27%), Positives = 140/274 (51%), Gaps = 15/274 (5%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNG- 97
+ NL+ SVD++AL F FG + +V ++ SRG+A + F + A +A MNG
Sbjct: 240 IKNLDRSVDDKALFERFSAFGKILSSKVVSDERG-SRGYAFVHFQEQSAADRAIEHMNGA 298
Query: 98 HLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNI 157
L G + FV ++++ + + +++KN +D+ L++ F ++G
Sbjct: 299 QLRGCR----LFVGRFQSRQAREAELRSRAGEFTNLYIKNFGGRMDDARLRAVFSEYGKT 354
Query: 158 IEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPGK 212
+ VK++ D +G+S+GFGF+ F S++AA +A+ +NGR + FV A+ +
Sbjct: 355 LSVKVMTDASGRSRGFGFVSFESHEAARRAVEALNGRQVDGQPLFVGRAQRKAERQAELR 414
Query: 213 KVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGF 268
+ F + + L+ A+ K++V NL ++ F+ FG ++ ++ + K G
Sbjct: 415 RAFEQRQQDGLRRAQGAKLYVKNLDDAVDEDRLRREFSGFGAVSRVKIMREEGRSKGFGL 474
Query: 269 IEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
I F A A++ MNG V SKPL + L+ ++
Sbjct: 475 ICFSSADEAARALAEMNGRVLGSKPLSIALAQSR 508
Score = 102 bits (255), Expect = 2e-19, Method: Composition-based stats.
Identities = 70/271 (25%), Positives = 128/271 (47%), Gaps = 21/271 (7%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y++ L+V +L+ V AL +F G + +R+ R+ S G+A + F A+A++
Sbjct: 145 YRQASLYVGDLDAEVTEDALFRKFSAAGPVLSIRICRDLLTRRSLGYAYVNFLRLADAQR 204
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN ++ +P+ + + + R VG VF+KNL +VD++ L
Sbjct: 205 ALDTMNFDVLRGRPLRLMWSQRDAHLRKSGVG---------NVFIKNLDRSVDDKALFER 255
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVP 210
F FG I+ K+V DE G S+G+ F+ F AA++AI MNG ++ FV +
Sbjct: 256 FSAFGKILSSKVVSDERG-SRGYAFVHFQEQSAADRAIEHMNGAQLRGCRLFVGRFQSRQ 314
Query: 211 GKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KH 265
++ + + +++ N ++++ +F+ +G S +++D +
Sbjct: 315 AREAELRSR-----AGEFTNLYIKNFGGRMDDARLRAVFSEYGKTLSVKVMTDASGRSRG 369
Query: 266 IGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
GF+ F + A AV +NG +PL V
Sbjct: 370 FGFVSFESHEAARRAVEALNGRQVDGQPLFV 400
Score = 98.6 bits (244), Expect = 4e-18, Method: Composition-based stats.
Identities = 59/194 (30%), Positives = 103/194 (53%), Gaps = 10/194 (5%)
Query: 22 ARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIV 81
AR + ++ + L++ N +D+ L F ++G V+V + + SRGF +
Sbjct: 315 AREAELRSRAGEFTNLYIKNFGGRMDDARLRAVFSEYGKTLSVKVMTDASGRSRGFGFVS 374
Query: 82 FNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKD--------KV 133
F + A++A +NG + +P+ + + K +R + +Q ++D K+
Sbjct: 375 FESHEAARRAVEALNGRQVDGQPLFVGRAQRK-AERQAELRRAFEQRQQDGLRRAQGAKL 433
Query: 134 FVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNG 193
+VKNL + VDE+ L+ F FG + VKI+R+E G+SKGFG I F S A +A+ EMNG
Sbjct: 434 YVKNLDDAVDEDRLRREFSGFGAVSRVKIMREE-GRSKGFGLICFSSADEAARALAEMNG 492
Query: 194 RMIQHNSTFVSLAE 207
R++ ++LA+
Sbjct: 493 RVLGSKPLSIALAQ 506
>gi|357120111|ref|XP_003561773.1| PREDICTED: polyadenylate-binding protein-like [Brachypodium
distachyon]
Length = 714
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 86/275 (31%), Positives = 139/275 (50%), Gaps = 18/275 (6%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN-G 97
V NL +DN L F KFG + +VARN + SRG+ + F A A +N
Sbjct: 194 VKNLNDHIDNVILQELFSKFGDILSCKVARNDDGTSRGYGFVQFAAQESADIAIENLNNS 253
Query: 98 HLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNI 157
H G + + F+ K +RS K +++KNL + + EE +K F +FG +
Sbjct: 254 HFEGRQLHVAHFI--KKSERSA-----NNDDKYTNLYMKNLDDDMTEELIKLKFSQFGPL 306
Query: 158 IEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPK 217
I VKI++ ++G SKGFGF+ F S +A+KA MNG + S +V+ A+ +K + +
Sbjct: 307 ISVKIMKRDDGTSKGFGFVSFKSPDSAKKAKEAMNGIPLGSKSLYVARAQKKAERKQYLQ 366
Query: 218 V-----KPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIG 267
+ + +L + + +++ N+ +++ E F FG ITS ++ D K G
Sbjct: 367 LLHEEKRNEILTKSNGSNVYIKNISDRVDDETLRERFDEFGNITSVKIMRDDKGISKGFG 426
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F+ + P A AVS+M G +F KPL V ++ K
Sbjct: 427 FVCYNTPDEAKCAVSSMRGVMFYDKPLYVAIAQRK 461
Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 62/201 (30%), Positives = 103/201 (51%), Gaps = 25/201 (12%)
Query: 23 RSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVF 82
+S + N K L++ NL+ + + + +F +FG L V++ + + S+GF + F
Sbjct: 268 KSERSANNDDKYTNLYMKNLDDDMTEELIKLKFSQFGPLISVKIMKRDDGTSKGFGFVSF 327
Query: 83 NTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKK------------ 130
+P AKKA+ MNG +GSK + + + K E KQY +
Sbjct: 328 KSPDSAKKAKEAMNGIPLGSKSLYVARAQKKA---------ERKQYLQLLHEEKRNEILT 378
Query: 131 ----DKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEK 186
V++KN+ + VD+E L+ F +FGNI VKI+RD+ G SKGFGF+ + + A+
Sbjct: 379 KSNGSNVYIKNISDRVDDETLRERFDEFGNITSVKIMRDDKGISKGFGFVCYNTPDEAKC 438
Query: 187 AIIEMNGRMIQHNSTFVSLAE 207
A+ M G M +V++A+
Sbjct: 439 AVSSMRGVMFYDKPLYVAIAQ 459
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 76/272 (27%), Positives = 126/272 (46%), Gaps = 33/272 (12%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L + L + F K G + VRV R+ S + + + + A+A A +M
Sbjct: 104 LYVGDLHEDAQEEHLFDAFSKVGAVTSVRVCRDTATSSSLRYGYVNYFSQADAMTALEKM 163
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI KP+ + + P R VG VFVKNL + +D L+ F KFG
Sbjct: 164 NHSLILDKPIRVMWSNRDPDARRSGVG---------NVFVKNLNDHIDNVILQELFSKFG 214
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMN-----GRMIQHNSTFVSLAEIVP 210
+I+ K+ R+++G S+G+GF+QF + ++A+ AI +N GR + H + F+ +E
Sbjct: 215 DILSCKVARNDDGTSRGYGFVQFAAQESADIAIENLNNSHFEGRQL-HVAHFIKKSERSA 273
Query: 211 GKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLV-----SDKH 265
+ +++ NL ++ + F++FG + S ++ + K
Sbjct: 274 NND------------DKYTNLYMKNLDDDMTEELIKLKFSQFGPLISVKIMKRDDGTSKG 321
Query: 266 IGFIEFIMPKHATHAVSTMNGHVFKSKPLKVT 297
GF+ F P A A MNG SK L V
Sbjct: 322 FGFVSFKSPDSAKKAKEAMNGIPLGSKSLYVA 353
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 51/96 (53%), Gaps = 2/96 (2%)
Query: 26 KENNKVYKEN--ELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFN 83
K N + K N +++ N+ VD++ L F +FG + V++ R+ S+GF + +N
Sbjct: 372 KRNEILTKSNGSNVYIKNISDRVDDETLRERFDEFGNITSVKIMRDDKGISKGFGFVCYN 431
Query: 84 TPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSK 119
TP EAK A M G + KP+ + + K ++++
Sbjct: 432 TPDEAKCAVSSMRGVMFYDKPLYVAIAQRKEDRKAR 467
>gi|378732913|gb|EHY59372.1| nucleolin [Exophiala dermatitidis NIH/UT8656]
Length = 779
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 76/268 (28%), Positives = 132/268 (49%), Gaps = 24/268 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+PSV L F G + +RV R+ S G+A + +N A+ ++A ++
Sbjct: 63 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 122
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N I +P I + + P R G VF+KNL +D + L F +FG
Sbjct: 123 NYTSIKGRPCRIMWSQRDPALRKTGQG---------NVFIKNLDAAIDNKALHDTFSQFG 173
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ +DE G SKG+GF+ + + +AA +AI +NG ++ FV G +
Sbjct: 174 NILSCKVAQDELGNSKGYGFVHYETAEAANQAIKSVNGMLLNDKKVFV-------GHHIA 226
Query: 216 PKVKPPLLQPARKN--KIFVANLPSNINNSEFEELFARFGTITSSSLVSDKH-----IGF 268
+ + L+ + N +++ N+ ++++ EF +LF +G + S+++ D++ GF
Sbjct: 227 KRDRQSKLEEMKANFTNVYIKNIDESVSDEEFTKLFEPYGEVVSATITRDENGKSRGFGF 286
Query: 269 IEFIMPKHATHAVSTMNGHVFKSKPLKV 296
+ F + A AV +N F K L V
Sbjct: 287 VNFASHESAAKAVEELNDKEFHGKKLYV 314
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 70/230 (30%), Positives = 131/230 (56%), Gaps = 8/230 (3%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ ++DN+AL + F +FG + +VA+++ S+G+ + + T A +A +NG
Sbjct: 153 IKNLDAAIDNKALHDTFSQFGNILSCKVAQDELGNSKGYGFVHYETAEAANQAIKSVNGM 212
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ K V + K ++SK EE + V++KN+ E+V +EE F +G ++
Sbjct: 213 LLNDKKVFVGHHIAKRDRQSKL---EEMKANFTNVYIKNIDESVSDEEFTKLFEPYGEVV 269
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGK--KVFP 216
I RDENGKS+GFGF+ F S+++A KA+ E+N + +V A+ + ++
Sbjct: 270 SATITRDENGKSRGFGFVNFASHESAAKAVEELNDKEFHGKKLYVGRAQKKHEREEELRR 329
Query: 217 KVKPPLLQPARKNK---IFVANLPSNINNSEFEELFARFGTITSSSLVSD 263
+ + ++ A K + ++V NL ++++ + ELF+ +GTITS+ ++ D
Sbjct: 330 QYEAARMEKASKYQGVNLYVKNLTDDVDDDKLRELFSSYGTITSAKVMRD 379
Score = 41.6 bits (96), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 27/40 (67%)
Query: 168 GKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
GKSKGFGF+ F + A KA+ EMN +M+ +V+LA+
Sbjct: 440 GKSKGFGFVCFSNPDEASKAVSEMNQKMVNGKPLYVALAQ 479
Score = 38.5 bits (88), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 27/46 (58%)
Query: 74 SRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSK 119
S+GF + F+ P EA KA EMN ++ KP+ + + K +R++
Sbjct: 442 SKGFGFVCFSNPDEASKAVSEMNQKMVNGKPLYVALAQRKDVRRNQ 487
>gi|213409529|ref|XP_002175535.1| polyadenylate-binding protein [Schizosaccharomyces japonicus
yFS275]
gi|212003582|gb|EEB09242.1| polyadenylate-binding protein [Schizosaccharomyces japonicus
yFS275]
Length = 621
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 80/274 (29%), Positives = 140/274 (51%), Gaps = 13/274 (4%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+P++DN+AL + F FG + +VA ++ S+G+ + F++ A A +NG
Sbjct: 161 IKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNSKGYGFVHFDSVDSANAAIEHVNGM 220
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ K V +V +R + E + V+VKNL EEE F K+G I
Sbjct: 221 LLNDKKV---YVGHHISRRDRQSKFEALKANFTNVYVKNLDLDTTEEEFTKLFEKYGKIT 277
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKK 213
+ + +D GK +GF F+ F ++ +A++A+ E+N + +V A+ +K
Sbjct: 278 SLSLAKDNAGKFRGFAFVNFATHDSAQQAVDELNDFEYKGKKLYVGRAQKKHERQEELRK 337
Query: 214 VFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGF 268
+ ++K + + +FV NL I++ + F+ FGTITS+ +++D K GF
Sbjct: 338 QYEQMKLEKINKYQGVNLFVKNLQDEIDDERLKSEFSAFGTITSAKVMTDENNKSKGFGF 397
Query: 269 IEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
+ + P+ AT A++ MN + KPL V L+ K
Sbjct: 398 VCYSNPEEATKAIAEMNQRMLAGKPLYVALAQRK 431
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 89/305 (29%), Positives = 133/305 (43%), Gaps = 27/305 (8%)
Query: 3 SKGKILEASWDEGISDDEGARSNK---ENNKVYKENELHVNNLEPSVDNQALINEFKKFG 59
SK A+ E D + SNK EN L++ L+P V L F G
Sbjct: 34 SKTDAAAAAPSEETKDSSESASNKTKSENGNTSTSASLYIGELDPMVTEAMLFELFNSIG 93
Query: 60 TLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRS 118
+ +RV R+ S G+A + F+ + +KA E+N LI +P I + + P R
Sbjct: 94 PVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDELNYTLIKGRPCRIMWSQRDPSLRK 153
Query: 119 KPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQF 178
G VF+KNL +D + L F FG I+ K+ DE G SKG+GF+ F
Sbjct: 154 MGTG---------NVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNSKGYGFVHF 204
Query: 179 FSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKN--KIFVANL 236
S +A AI +NG ++ +V G + + + + + N ++V NL
Sbjct: 205 DSVDSANAAIEHVNGMLLNDKKVYV-------GHHISRRDRQSKFEALKANFTNVYVKNL 257
Query: 237 PSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKS 291
+ EF +LF ++G ITS SL D + F+ F A AV +N +K
Sbjct: 258 DLDTTEEEFTKLFEKYGKITSLSLAKDNAGKFRGFAFVNFATHDSAQQAVDELNDFEYKG 317
Query: 292 KPLKV 296
K L V
Sbjct: 318 KKLYV 322
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 99/179 (55%), Gaps = 9/179 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
++V NL+ + F+K+G + + +A++ + RGFA + F T A++A E+N
Sbjct: 252 VYVKNLDLDTTEEEFTKLFEKYGKITSLSLAKDNAGKFRGFAFVNFATHDSAQQAVDELN 311
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKV--------FVKNLVETVDEEELK 148
K + + + K +R + + + +Q K +K+ FVKNL + +D+E LK
Sbjct: 312 DFEYKGKKLYVGRAQ-KKHERQEELRKQYEQMKLEKINKYQGVNLFVKNLQDEIDDERLK 370
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
S F FG I K++ DEN KSKGFGF+ + + + A KAI EMN RM+ +V+LA+
Sbjct: 371 SEFSAFGTITSAKVMTDENNKSKGFGFVCYSNPEEATKAIAEMNQRMLAGKPLYVALAQ 429
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 53/88 (60%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L V NL+ +D++ L +EF FGT+ +V ++N++S+GF + ++ P EA KA
Sbjct: 350 YQGVNLFVKNLQDEIDDERLKSEFSAFGTITSAKVMTDENNKSKGFGFVCYSNPEEATKA 409
Query: 92 RVEMNGHLIGSKPVIITFVELKPGQRSK 119
EMN ++ KP+ + + K +RS+
Sbjct: 410 IAEMNQRMLAGKPLYVALAQRKEVRRSQ 437
>gi|401886540|gb|EJT50568.1| polyadenylate-binding protein [Trichosporon asahii var. asahii CBS
2479]
Length = 686
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 84/283 (29%), Positives = 142/283 (50%), Gaps = 21/283 (7%)
Query: 34 ENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARV 93
+ + + NL+ +DN+AL + F FG + +VA ++N SRGFA + + T A A
Sbjct: 144 QGNIFIKNLDDKIDNKALHDTFAAFGNILSCKVATDENGNSRGFAFVHYETGEAADAAIK 203
Query: 94 EMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIK 153
+NG L+ K V + K ++SK EE++ K +F+KNL +++L+ F
Sbjct: 204 SVNGMLLNDKKVYVGHHISKKERQSK---VEEQRAKFTNIFIKNLEPEFTQKDLEDMFKP 260
Query: 154 FGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKK 213
FG I+ + E+G SKGF F+ + ++ AA+KA+ E+N + I +V A+ K+
Sbjct: 261 FGEIVSAALSVGEDGLSKGFAFVNYTTHDAAKKAVDELNDKEINGKKLYVGRAQ----KR 316
Query: 214 VFPKVKPPLLQPARKNK---------IFVANLPSNINNSEFEELFARFGTITSSSLVSD- 263
+ + R+ + ++V N+ ++ F GTITS+ ++ D
Sbjct: 317 AERDEELRRMHEERRLENESKTAGVNLYVKNIDDEWDDDRLRSEFDFAGTITSAKVMRDD 376
Query: 264 ----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
+ GF+ F P AT AV MNG + +KPL V+L+ K
Sbjct: 377 KGASRGFGFVCFSQPDEATRAVQEMNGKMIGTKPLYVSLAQKK 419
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 77/266 (28%), Positives = 123/266 (46%), Gaps = 20/266 (7%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+PSV L F G + +RV R+ S G+A + + A+ ++A +
Sbjct: 59 LYVGELDPSVTEAMLFEIFNMVGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEHL 118
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI ++P I + + P R G +F+KNL + +D + L F FG
Sbjct: 119 NYSLIKNRPCRIMWSQRDPALRKTGQG---------NIFIKNLDDKIDNKALHDTFAAFG 169
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ DENG S+GF F+ + + +AA+ AI +NG ++ +V + K+
Sbjct: 170 NILSCKVATDENGNSRGFAFVHYETGEAADAAIKSVNGMLLNDKKVYV--GHHISKKERQ 227
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS-----DKHIGFIE 270
KV+ Q A+ IF+ NL + E++F FG I S++L K F+
Sbjct: 228 SKVEE---QRAKFTNIFIKNLEPEFTQKDLEDMFKPFGEIVSAALSVGEDGLSKGFAFVN 284
Query: 271 FIMPKHATHAVSTMNGHVFKSKPLKV 296
+ A AV +N K L V
Sbjct: 285 YTTHDAAKKAVDELNDKEINGKKLYV 310
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 102/193 (52%), Gaps = 9/193 (4%)
Query: 23 RSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVF 82
R +K + K + + NLEP + L + FK FG + ++ ++ S+GFA + +
Sbjct: 226 RQSKVEEQRAKFTNIFIKNLEPEFTQKDLEDMFKPFGEIVSAALSVGEDGLSKGFAFVNY 285
Query: 83 NTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP--EEKQYKKDK------VF 134
T AKKA E+N I K + + + K +R + + EE++ + + ++
Sbjct: 286 TTHDAAKKAVDELNDKEINGKKLYVGRAQ-KRAERDEELRRMHEERRLENESKTAGVNLY 344
Query: 135 VKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGR 194
VKN+ + D++ L+S F G I K++RD+ G S+GFGF+ F A +A+ EMNG+
Sbjct: 345 VKNIDDEWDDDRLRSEFDFAGTITSAKVMRDDKGASRGFGFVCFSQPDEATRAVQEMNGK 404
Query: 195 MIQHNSTFVSLAE 207
MI +VSLA+
Sbjct: 405 MIGTKPLYVSLAQ 417
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 55/100 (55%), Gaps = 5/100 (5%)
Query: 19 DEGARSNKENNKVYKENE-----LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDE 73
DE R E ++ E++ L+V N++ D+ L +EF GT+ +V R+
Sbjct: 320 DEELRRMHEERRLENESKTAGVNLYVKNIDDEWDDDRLRSEFDFAGTITSAKVMRDDKGA 379
Query: 74 SRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELK 113
SRGF + F+ P EA +A EMNG +IG+KP+ ++ + K
Sbjct: 380 SRGFGFVCFSQPDEATRAVQEMNGKMIGTKPLYVSLAQKK 419
>gi|406698471|gb|EKD01707.1| polyadenylate-binding protein [Trichosporon asahii var. asahii CBS
8904]
Length = 686
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 84/283 (29%), Positives = 142/283 (50%), Gaps = 21/283 (7%)
Query: 34 ENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARV 93
+ + + NL+ +DN+AL + F FG + +VA ++N SRGFA + + T A A
Sbjct: 144 QGNIFIKNLDDKIDNKALHDTFAAFGNILSCKVATDENGNSRGFAFVHYETGEAADAAIK 203
Query: 94 EMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIK 153
+NG L+ K V + K ++SK EE++ K +F+KNL +++L+ F
Sbjct: 204 SVNGMLLNDKKVYVGHHISKKERQSK---VEEQRAKFTNIFIKNLEPEFTQKDLEDMFKP 260
Query: 154 FGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKK 213
FG I+ + E+G SKGF F+ + ++ AA+KA+ E+N + I +V A+ K+
Sbjct: 261 FGEIVSAALSVGEDGLSKGFAFVNYTTHDAAKKAVDELNDKEINGKKLYVGRAQ----KR 316
Query: 214 VFPKVKPPLLQPARKNK---------IFVANLPSNINNSEFEELFARFGTITSSSLVSD- 263
+ + R+ + ++V N+ ++ F GTITS+ ++ D
Sbjct: 317 AERDEELRRMHEERRLENESKTAGVNLYVKNIDDEWDDDRLRSEFDFAGTITSAKVMRDD 376
Query: 264 ----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
+ GF+ F P AT AV MNG + +KPL V+L+ K
Sbjct: 377 KGASRGFGFVCFSQPDEATRAVQEMNGKMIGTKPLYVSLAQKK 419
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 77/266 (28%), Positives = 123/266 (46%), Gaps = 20/266 (7%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+PSV L F G + +RV R+ S G+A + + A+ ++A +
Sbjct: 59 LYVGELDPSVTEAMLFEIFNMVGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEHL 118
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI ++P I + + P R G +F+KNL + +D + L F FG
Sbjct: 119 NYSLIKNRPCRIMWSQRDPALRKTGQG---------NIFIKNLDDKIDNKALHDTFAAFG 169
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ DENG S+GF F+ + + +AA+ AI +NG ++ +V + K+
Sbjct: 170 NILSCKVATDENGNSRGFAFVHYETGEAADAAIKSVNGMLLNDKKVYV--GHHISKKERQ 227
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS-----DKHIGFIE 270
KV+ Q A+ IF+ NL + E++F FG I S++L K F+
Sbjct: 228 SKVEE---QRAKFTNIFIKNLEPEFTQKDLEDMFKPFGEIVSAALSVGEDGLSKGFAFVN 284
Query: 271 FIMPKHATHAVSTMNGHVFKSKPLKV 296
+ A AV +N K L V
Sbjct: 285 YTTHDAAKKAVDELNDKEINGKKLYV 310
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 102/193 (52%), Gaps = 9/193 (4%)
Query: 23 RSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVF 82
R +K + K + + NLEP + L + FK FG + ++ ++ S+GFA + +
Sbjct: 226 RQSKVEEQRAKFTNIFIKNLEPEFTQKDLEDMFKPFGEIVSAALSVGEDGLSKGFAFVNY 285
Query: 83 NTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP--EEKQYKKDK------VF 134
T AKKA E+N I K + + + K +R + + EE++ + + ++
Sbjct: 286 TTHDAAKKAVDELNDKEINGKKLYVGRAQ-KRAERDEELRRMHEERRLENESKTAGVNLY 344
Query: 135 VKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGR 194
VKN+ + D++ L+S F G I K++RD+ G S+GFGF+ F A +A+ EMNG+
Sbjct: 345 VKNIDDEWDDDRLRSEFDFAGTITSAKVMRDDKGASRGFGFVCFSQPDEATRAVQEMNGK 404
Query: 195 MIQHNSTFVSLAE 207
MI +VSLA+
Sbjct: 405 MIGTKPLYVSLAQ 417
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 55/100 (55%), Gaps = 5/100 (5%)
Query: 19 DEGARSNKENNKVYKENE-----LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDE 73
DE R E ++ E++ L+V N++ D+ L +EF GT+ +V R+
Sbjct: 320 DEELRRMHEERRLENESKTAGVNLYVKNIDDEWDDDRLRSEFDFAGTITSAKVMRDDKGA 379
Query: 74 SRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELK 113
SRGF + F+ P EA +A EMNG +IG+KP+ ++ + K
Sbjct: 380 SRGFGFVCFSQPDEATRAVQEMNGKMIGTKPLYVSLAQKK 419
>gi|294659673|ref|XP_002770625.1| DEHA2G12474p [Debaryomyces hansenii CBS767]
gi|218511736|sp|Q6BI95.2|PABP_DEBHA RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|199434145|emb|CAR65959.1| DEHA2G12474p [Debaryomyces hansenii CBS767]
Length = 627
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 92/309 (29%), Positives = 150/309 (48%), Gaps = 23/309 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
+G+ W + D R N + N + + NL P++DN+AL + F FG +
Sbjct: 118 EGRPCRIMWSQ---RDPSLRRNGDGN-------IFIKNLHPAIDNKALHDTFTAFGKILS 167
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+VA + S+ F + + T A+ A +NG L+ + V + K + SK
Sbjct: 168 CKVATDDMGISKCFGFVHYETAEAAEAAIENVNGMLLNDREVYVGKHISKKDRESK---F 224
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
EE + V+ KN+ EEE K F +G I + + +D GKSKGFGF+ F ++++
Sbjct: 225 EEMKANFTNVYAKNIDLDFSEEEFKKLFEAYGKITSIYLEKDHEGKSKGFGFVNFENHES 284
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A KA+ E+N + I +V A+ + KK + + L + +F+ NL
Sbjct: 285 AVKAVDELNDKEINGQKIYVGRAQKKRERLEELKKQYENTRLEKLSKYQGVNLFIKNLDD 344
Query: 239 NINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKP 293
I++ + EE F FG+ITS+ ++ D K GF+ F P+ AT A++ MN + KP
Sbjct: 345 TIDSEKLEEEFKPFGSITSARVMVDETGKSKGFGFVCFSSPEEATKAITEMNQRMIYGKP 404
Query: 294 LKVTLSGTK 302
L V L+ K
Sbjct: 405 LYVALAQRK 413
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 75/257 (29%), Positives = 121/257 (47%), Gaps = 24/257 (9%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L PSV+ L F G + +RV R+ +S G+A + F+ + +KA ++
Sbjct: 53 LYVGELNPSVNEALLFEIFSPIGQVASIRVCRDAVTKKSLGYAYVNFHKFEDGEKAIEDL 112
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI +P I + + P R G +F+KNL +D + L F FG
Sbjct: 113 NYSLIEGRPCRIMWSQRDPSLRRNGDG---------NIFIKNLHPAIDNKALHDTFTAFG 163
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
I+ K+ D+ G SK FGF+ + + +AAE AI +NG ++ +V GK +
Sbjct: 164 KILSCKVATDDMGISKCFGFVHYETAEAAEAAIENVNGMLLNDREVYV-------GKHIS 216
Query: 216 PKVKPPLLQPARKN--KIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGF 268
K + + + N ++ N+ + + EF++LF +G ITS L D K GF
Sbjct: 217 KKDRESKFEEMKANFTNVYAKNIDLDFSEEEFKKLFEAYGKITSIYLEKDHEGKSKGFGF 276
Query: 269 IEFIMPKHATHAVSTMN 285
+ F + A AV +N
Sbjct: 277 VNFENHESAVKAVDELN 293
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 53/88 (60%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L + NL+ ++D++ L EFK FG++ RV ++ +S+GF + F++P EA KA
Sbjct: 332 YQGVNLFIKNLDDTIDSEKLEEEFKPFGSITSARVMVDETGKSKGFGFVCFSSPEEATKA 391
Query: 92 RVEMNGHLIGSKPVIITFVELKPGQRSK 119
EMN +I KP+ + + K +RS+
Sbjct: 392 ITEMNQRMIYGKPLYVALAQRKDVRRSQ 419
>gi|380799249|gb|AFE71500.1| polyadenylate-binding protein 5, partial [Macaca mulatta]
Length = 256
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 79/250 (31%), Positives = 143/250 (57%), Gaps = 12/250 (4%)
Query: 58 FGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQR 117
FG + +V + N S+G+A + F++ A A +A MNG + ++ V + + P +R
Sbjct: 3 FGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKF-PEER 60
Query: 118 SKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQ 177
+ V ++ + VFVKN+ + +D+E+LK F ++G VK++RD +GKSKGFGF++
Sbjct: 61 AAEVRTRDRATFTN-VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVR 119
Query: 178 FFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNK-----IF 232
+ +++AA+KA+++++G+ I +V A+ + + + L+ K++ I+
Sbjct: 120 YETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIY 179
Query: 233 VANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHV 288
+ NL IN+ + +E F+ FG+I+ + ++ + K G + F + AT AV MNG V
Sbjct: 180 IKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEATKAVDEMNGRV 239
Query: 289 FKSKPLKVTL 298
SKPL VTL
Sbjct: 240 VGSKPLHVTL 249
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 99/176 (56%), Gaps = 8/176 (4%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
V N+ +D++ L F ++G V+V R+ + +S+GF + + T A+KA ++++G
Sbjct: 77 VKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGK 136
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDK-------VFVKNLVETVDEEELKSHF 151
I K + + + K + ++ E+ K+K +++KNL ET+++E+LK F
Sbjct: 137 SIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEF 196
Query: 152 IKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
FG+I K++ E G+ KGFG + F S++ A KA+ EMNGR++ V+L +
Sbjct: 197 SSFGSISRAKVMM-EVGQGKGFGVVCFSSFEEATKAVDEMNGRVVGSKPLHVTLGQ 251
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+++ NL+ +++++ L EF FG++ +V + +GF ++ F++ EA KA EMN
Sbjct: 178 IYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVG-QGKGFGVVCFSSFEEATKAVDEMN 236
Query: 97 GHLIGSKPVIITF 109
G ++GSKP+ +T
Sbjct: 237 GRVVGSKPLHVTL 249
>gi|47223169|emb|CAG11304.1| unnamed protein product [Tetraodon nigroviridis]
Length = 642
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 79/239 (33%), Positives = 128/239 (53%), Gaps = 20/239 (8%)
Query: 74 SRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVII-TFVELKPGQRSKPVGPEEKQYKKDK 132
S+G+ + F T A +A MNG L+ + V + F K +R + +G K K
Sbjct: 135 SKGYGFVHFETEEAANRAIETMNGMLLNDRKVFVGNFKSRK--EREEELG--SKALKFTN 190
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMN 192
V++KN E +E+LK F FG + V++++DE G+S+GFGF+ F + A+KA+ EMN
Sbjct: 191 VYIKNFGEDYTDEKLKEVFSAFGRTLSVRVMKDERGRSRGFGFVNFAHHGDAQKAVDEMN 250
Query: 193 GRMIQHNSTFVSLA--------EIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSE 244
G + +V A E+ K+ F +K +Q + ++V NL I++
Sbjct: 251 GTELNGKVIYVGRAQKRLERQGEL---KRKFELIKQDRIQRYQGVNLYVKNLDDGIDDER 307
Query: 245 FEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299
+ FA +GTITS+ +++D + GF+ F P+ AT AV+ MNG + +KPL V L+
Sbjct: 308 LRKEFAPYGTITSAKVMTDGPQSRGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 366
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 100/193 (51%), Gaps = 10/193 (5%)
Query: 23 RSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVF 82
R + +K K +++ N ++ L F FG VRV +++ SRGF + F
Sbjct: 177 REEELGSKALKFTNVYIKNFGEDYTDEKLKEVFSAFGRTLSVRVMKDERGRSRGFGFVNF 236
Query: 83 NTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKV--------F 134
+A+KA EMNG + K + + + K +R + + + K+D++ +
Sbjct: 237 AHHGDAQKAVDEMNGTELNGKVIYVGRAQ-KRLERQGELKRKFELIKQDRIQRYQGVNLY 295
Query: 135 VKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGR 194
VKNL + +D+E L+ F +G I K++ D +S+GFGF+ F S + A KA+ EMNGR
Sbjct: 296 VKNLDDGIDDERLRKEFAPYGTITSAKVMTD-GPQSRGFGFVCFSSPEEATKAVTEMNGR 354
Query: 195 MIQHNSTFVSLAE 207
++ +V+LA+
Sbjct: 355 IVATKPLYVALAQ 367
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 49/82 (59%), Gaps = 1/82 (1%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L+V NL+ +D++ L EF +GT+ +V + +SRGF + F++P EA KA
Sbjct: 289 YQGVNLYVKNLDDGIDDERLRKEFAPYGTITSAKVMTD-GPQSRGFGFVCFSSPEEATKA 347
Query: 92 RVEMNGHLIGSKPVIITFVELK 113
EMNG ++ +KP+ + + +
Sbjct: 348 VTEMNGRIVATKPLYVALAQRR 369
>gi|70663933|emb|CAE02947.3| OSJNBa0014K14.19 [Oryza sativa Japonica Group]
Length = 657
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 77/256 (30%), Positives = 125/256 (48%), Gaps = 22/256 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKKARVEM 95
L+V +LE SV + L F + G + VRV R+ + S G+A + FN P +A +A +
Sbjct: 41 LYVGDLEASVTDSQLYELFSQAGQVMSVRVCRDISSRRSLGYAYVNFNNPVDAARALELL 100
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N + KP+ + + P R + +F+KNL + +D + L F FG
Sbjct: 101 NFAPLNGKPIRVMYSNRDPSSR---------RSGSANIFIKNLDKAIDHKTLHDTFSAFG 151
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ DE G+SKGFGF+Q+ +AA+ AI +NG +I +V G +
Sbjct: 152 NILSCKVATDEMGQSKGFGFVQYDKGEAAQSAIKSLNGMLINDKPVYV-------GPFLR 204
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLV-----SDKHIGFIE 270
+ + + + N +FV NL + + ++F +G ITS+ ++ + GFI
Sbjct: 205 KQERENSVDKTKFNNVFVKNLSESTTKEDLVKIFGAYGNITSAVIMVGMDGKSRCFGFIN 264
Query: 271 FIMPKHATHAVSTMNG 286
F P A AV +NG
Sbjct: 265 FKSPDDAARAVEELNG 280
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 90/309 (29%), Positives = 150/309 (48%), Gaps = 36/309 (11%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ ++D++ L + F FG + +VA ++ +S+GF + ++ A+ A +N
Sbjct: 129 IFIKNLDKAIDHKTLHDTFSAFGNILSCKVATDEMGQSKGFGFVQYDKGEAAQSAIKSLN 188
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G LI KPV + L+ +R V + K + VFVKNL E+ +E+L F +GN
Sbjct: 189 GMLINDKPVYVGPF-LRKQERENSV----DKTKFNNVFVKNLSESTTKEDLVKIFGAYGN 243
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEI-----VPG 211
I I+ +GKS+ FGFI F S A +A+ E+NG+ I +V A+ +
Sbjct: 244 ITSAVIMVGMDGKSRCFGFINFKSPDDAARAVEELNGKKINDKEWYVGRAQKKSEREIEL 303
Query: 212 KKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHI 266
K+ F + + +++ NL +I + + ELF+ +G ITS ++ D K
Sbjct: 304 KRRFEQSMKDAADKYQGLNLYMKNLDDSIGDDQLCELFSNYGKITSCKIMRDANGVSKGS 363
Query: 267 GFIEF-IMPKHATHAVSTMNGHVFKSKPLKVT---------------LSGTKPGVSITNP 310
GF+ F +P ++ MNG + KPL V S +P V +T P
Sbjct: 364 GFVAFSTLP---FIQLTEMNGKMISGKPLYVAFAQRKEDRKAMLQAQFSQVRP-VPMT-P 418
Query: 311 TKAPKKPAY 319
+ AP+ P Y
Sbjct: 419 SMAPRLPMY 427
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 23 RSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVF 82
+S K+ Y+ L++ NL+ S+ + L F +G + ++ R+ N S+G + F
Sbjct: 309 QSMKDAADKYQGLNLYMKNLDDSIGDDQLCELFSNYGKITSCKIMRDANGVSKGSGFVAF 368
Query: 83 NTPAEAKKARVEMNGHLIGSKPVIITFVELK 113
+T + EMNG +I KP+ + F + K
Sbjct: 369 STLPFIQ--LTEMNGKMISGKPLYVAFAQRK 397
>gi|217074874|gb|ACJ85797.1| unknown [Medicago truncatula]
Length = 494
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 80/272 (29%), Positives = 144/272 (52%), Gaps = 17/272 (6%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ ++D++AL + F FG + ++A + + S+G+ + F A+ A ++N
Sbjct: 114 IFIKNLDRAIDHKALYDTFSIFGNILSCKIAMDASGLSKGYGFVQFENEESAQSAIDKLN 173
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G L+ KPV + QR + K + V+VKNL E+V +++LK+ F ++G
Sbjct: 174 GMLLNDKPVYVGHF-----QRKQDRDNALSNAKFNNVYVKNLSESVTDDDLKNTFGEYGT 228
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLA------EIVP 210
I ++RD +GKSK FGF+ F + AA +A+ +NG+ +V A E+
Sbjct: 229 ITSAVVMRDVDGKSKCFGFVNFENADAAAEAVEALNGKKFDDKEWYVGKALKKYERELEL 288
Query: 211 GKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KH 265
++ +K + + N +++ NL ++ + + ELF+ FGT+TS ++ D +
Sbjct: 289 KERHEQSMKETVDKFYGAN-LYLKNLDDSVTDEKLSELFSEFGTVTSCKILRDPQGISRG 347
Query: 266 IGFIEFIMPKHATHAVSTMNGHVFKSKPLKVT 297
GF+ F P+ AT A++ MNG + KPL V
Sbjct: 348 SGFVAFSTPEEATRALAEMNGKMVAGKPLYVA 379
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 77/266 (28%), Positives = 130/266 (48%), Gaps = 22/266 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L+ V + L + F + G + VR+ R+ + +S G+ + F+ P +A KA +
Sbjct: 26 LYVGDLDHDVTDSQLYDLFNQIGQVVSVRICRDLASQQSLGYGYVNFSNPHDAAKAMDVL 85
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N + +KP+ I + P R +F+KNL +D + L F FG
Sbjct: 86 NFTPLNNKPIRIMYSHRDPSVRKSGAA---------NIFIKNLDRAIDHKALYDTFSIFG 136
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ KI D +G SKG+GF+QF + ++A+ AI ++NG ++ +V G
Sbjct: 137 NILSCKIAMDASGLSKGYGFVQFENEESAQSAIDKLNGMLLNDKPVYV-------GHFQR 189
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIE 270
+ + L A+ N ++V NL ++ + + + F +GTITS+ ++ D K GF+
Sbjct: 190 KQDRDNALSNAKFNNVYVKNLSESVTDDDLKNTFGEYGTITSAVVMRDVDGKSKCFGFVN 249
Query: 271 FIMPKHATHAVSTMNGHVFKSKPLKV 296
F A AV +NG F K V
Sbjct: 250 FENADAAAEAVEALNGKKFDDKEWYV 275
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 114/234 (48%), Gaps = 21/234 (8%)
Query: 18 DDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGF 77
D + A SN + N VY V NL SV + L N F ++GT+ V R+ + +S+ F
Sbjct: 192 DRDNALSNAKFNNVY------VKNLSESVTDDDLKNTFGEYGTITSAVVMRDVDGKSKCF 245
Query: 78 AIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKV---- 133
+ F A +A +NG K + LK +R + +Q K+ V
Sbjct: 246 GFVNFENADAAAEAVEALNGKKFDDKEWYVG-KALKKYERELELKERHEQSMKETVDKFY 304
Query: 134 ----FVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAII 189
++KNL ++V +E+L F +FG + KI+RD G S+G GF+ F + + A +A+
Sbjct: 305 GANLYLKNLDDSVTDEKLSELFSEFGTVTSCKILRDPQGISRGSGFVAFSTPEEATRALA 364
Query: 190 EMNGRMIQHNSTFVSLAEIVPGKKV-----FPKVKPPLLQP-ARKNKIFVANLP 237
EMNG+M+ +V+ A+ +K F +V+P + P A + + A +P
Sbjct: 365 EMNGKMVAGKPLYVAPAQKKEERKARLPAQFSQVRPVTMAPIAPRLPFYPAGVP 418
>gi|302693014|ref|XP_003036186.1| hypothetical protein SCHCODRAFT_66185 [Schizophyllum commune H4-8]
gi|300109882|gb|EFJ01284.1| hypothetical protein SCHCODRAFT_66185 [Schizophyllum commune H4-8]
Length = 632
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 77/274 (28%), Positives = 145/274 (52%), Gaps = 13/274 (4%)
Query: 34 ENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARV 93
+ + + NL+ +DN+AL + F FG + +VA +++ S+G+ + + T A+ A
Sbjct: 133 QGNIFIKNLDEQIDNKALHDTFAAFGNVLSCKVATDEHGNSKGYGFVHYETAEAAENAIK 192
Query: 94 EMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIK 153
+NG L+ K V + + ++SK +E + + +++KN+ V +EE ++ F +
Sbjct: 193 NVNGMLLNDKKVYVGHHISRKERQSK---IDEMKAQFTNLYIKNIDPEVTDEEFEALFRE 249
Query: 154 FGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPG-- 211
GN+ I RDE G+S+GFGF+ + +++ A+KA+ +N + FVS A+
Sbjct: 250 QGNVTSSVIQRDEEGRSRGFGFVNYETHEEAQKAVDNLNDKDFHGRKLFVSRAQKKAERE 309
Query: 212 ---KKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----- 263
+K + + L + ++V NL ++++ + F FGTITS+ ++ D
Sbjct: 310 EELRKAHEQARLEKLSKYQGLNLYVKNLDDDVDDEKLRAEFEPFGTITSAKVMRDDKGVS 369
Query: 264 KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVT 297
K GF+ + P+ A+ AV+ MN + SKPL V+
Sbjct: 370 KGFGFVCYSSPEEASKAVAEMNNKMIGSKPLYVS 403
Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 75/269 (27%), Positives = 129/269 (47%), Gaps = 24/269 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+P+V L F G + +RV R+ S G+A + + A+ ++A ++
Sbjct: 48 LYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEQL 107
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI ++P I + + P R G +F+KNL E +D + L F FG
Sbjct: 108 NYSLIKNRPCRIMWSQRDPALRKTGQG---------NIFIKNLDEQIDNKALHDTFAAFG 158
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
N++ K+ DE+G SKG+GF+ + + +AAE AI +NG ++ +V G +
Sbjct: 159 NVLSCKVATDEHGNSKGYGFVHYETAEAAENAIKNVNGMLLNDKKVYV-------GHHIS 211
Query: 216 PKVKPPLLQP--ARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGF 268
K + + A+ +++ N+ + + EFE LF G +TSS + D + GF
Sbjct: 212 RKERQSKIDEMKAQFTNLYIKNIDPEVTDEEFEALFREQGNVTSSVIQRDEEGRSRGFGF 271
Query: 269 IEFIMPKHATHAVSTMNGHVFKSKPLKVT 297
+ + + A AV +N F + L V+
Sbjct: 272 VNYETHEEAQKAVDNLNDKDFHGRKLFVS 300
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 99/179 (55%), Gaps = 9/179 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L++ N++P V ++ F++ G + + R++ SRGF + + T EA+KA +N
Sbjct: 229 LYIKNIDPEVTDEEFEALFREQGNVTSSVIQRDEEGRSRGFGFVNYETHEEAQKAVDNLN 288
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKV--------FVKNLVETVDEEELK 148
+ + ++ + K +R + + +Q + +K+ +VKNL + VD+E+L+
Sbjct: 289 DKDFHGRKLFVSRAQ-KKAEREEELRKAHEQARLEKLSKYQGLNLYVKNLDDDVDDEKLR 347
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
+ F FG I K++RD+ G SKGFGF+ + S + A KA+ EMN +MI +VS A+
Sbjct: 348 AEFEPFGTITSAKVMRDDKGVSKGFGFVCYSSPEEASKAVAEMNNKMIGSKPLYVSHAQ 406
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 54/88 (61%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L+V NL+ VD++ L EF+ FGT+ +V R+ S+GF + +++P EA KA
Sbjct: 327 YQGLNLYVKNLDDDVDDEKLRAEFEPFGTITSAKVMRDDKGVSKGFGFVCYSSPEEASKA 386
Query: 92 RVEMNGHLIGSKPVIITFVELKPGQRSK 119
EMN +IGSKP+ ++ + + +R +
Sbjct: 387 VAEMNNKMIGSKPLYVSHAQRREVRRQQ 414
>gi|392339709|ref|XP_003753884.1| PREDICTED: LOW QUALITY PROTEIN: poly(A) binding protein,
cytoplasmic 1-like [Rattus norvegicus]
Length = 475
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 87/273 (31%), Positives = 130/273 (47%), Gaps = 51/273 (18%)
Query: 35 NELHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKKARV 93
+ L+V +L P V L F GT+ +RV R+ S G+A I F PA+A++A
Sbjct: 11 SSLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 94 EMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIK 153
MN +I +P+ I + PG R +G +F+KNL ++D + L F
Sbjct: 71 TMNFEMIKGQPIRIMWSHRDPGLRRSGMG---------NIFIKNLENSIDNKALYDTFST 121
Query: 154 FGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQ----HNSTFVSLAEIV 209
FG+I+ K+V +E+G S+GFGF+ F +++AA+KAI MNG ++ + SLA +
Sbjct: 122 FGSILSSKVVYNEHG-SRGFGFVHFETHEAAQKAINTMNGMLLNDRKVRSDYPWSLASLC 180
Query: 210 PGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKHIGFI 269
P A L S+ F +T SS K GF+
Sbjct: 181 P-----------------------ATLISSC-----------FQVMTESS--HSKGFGFV 204
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F P+ AT AV+ MNG + +KPL V L+ K
Sbjct: 205 CFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 237
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 90/204 (44%), Gaps = 46/204 (22%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KG+ + W D G R + N + + NLE S+DN+AL + F FG++
Sbjct: 78 KGQPIRIMWSH---RDPGLRRSGMGN-------IFIKNLENSIDNKALYDTFSTFGSILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V N++ SRGF + F T A+KA MNG L+
Sbjct: 128 SKVVYNEHG-SRGFGFVHFETHEAAQKAINTMNGMLL----------------------- 163
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
+++ + D + +L + S F V E+ SKGFGF+ F S +
Sbjct: 164 NDRKVRSD--YPWSLASLCPATLISSCF----------QVMTESSHSKGFGFVCFSSPEE 211
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE 207
A KA+ EMNGR++ +V+LA+
Sbjct: 212 ATKAVTEMNGRIVGTKPLYVALAQ 235
Score = 42.4 bits (98), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 6/83 (7%)
Query: 229 NKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGF--IEFIMPKHATHAVS 282
+ ++V +L ++ + E+F+ GTI S + D + +G+ I F P A A+
Sbjct: 11 SSLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 283 TMNGHVFKSKPLKVTLSGTKPGV 305
TMN + K +P+++ S PG+
Sbjct: 71 TMNFEMIKGQPIRIMWSHRDPGL 93
>gi|356505295|ref|XP_003521427.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Glycine max]
Length = 632
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 94/310 (30%), Positives = 153/310 (49%), Gaps = 29/310 (9%)
Query: 5 GKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDV 64
GK + W D AR N N L V NL S+DN L + FKK+G +
Sbjct: 80 GKAMRVMWSR---RDPDARKNAIGN-------LFVKNLPESIDNAGLQDMFKKYGNILSS 129
Query: 65 RVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIIT-FVELKPGQRSKPVGP 123
+V +++ +S+G+ + F + + A ++NG +G K + + FV K R P GP
Sbjct: 130 KVVMSEDGKSKGYGFVQFESEESSNVAIEKLNGSTVGDKQLYVGKFV--KKSDRILP-GP 186
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
+ + +++KNL V E L+ F FG I+ + I +D G SKGFGF+ + +
Sbjct: 187 DARY---TNLYMKNLDLDVSEATLQEKFSSFGKIVSLVIAKDNIGMSKGFGFVNYDNPDD 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLA------EIVPGKKVFPKVKPPLLQPARKNKIFVANLP 237
A++A+ MNG + +V+ A E + + K K +L+ N I+V N+
Sbjct: 244 AKRAMEAMNGSKLGSKILYVARAQKKAEREQILHHQFEEKRKEQILKYKGSN-IYVKNID 302
Query: 238 SNINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSK 292
++++ E + F+ G ITS+ ++ D K GF+ F P+ A AV+T +G +F K
Sbjct: 303 DHVSDEELRDHFSACGIITSAKIMRDDKGISKGFGFVCFSTPEEANKAVNTFHGFMFHGK 362
Query: 293 PLKVTLSGTK 302
PL V L+ K
Sbjct: 363 PLYVALAQRK 372
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 80/272 (29%), Positives = 132/272 (48%), Gaps = 32/272 (11%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKND-ESRGFAIIVFNTPAEAKKARVEM 95
L+V +L P+V + L++ F F +L VRV ++ + +S + + F +P +A +A
Sbjct: 14 LYVGDLHPNVSDNHLVDAFSDFESLASVRVCKDSSTGKSLCYGYVNFVSPQDAIRAIELK 73
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N + K + + + P R +G +FVKNL E++D L+ F K+G
Sbjct: 74 NNSTLNGKAMRVMWSRRDPDARKNAIG---------NLFVKNLPESIDNAGLQDMFKKYG 124
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVS-----LAEIVP 210
NI+ K+V E+GKSKG+GF+QF S +++ AI ++NG + +V I+P
Sbjct: 125 NILSSKVVMSEDGKSKGYGFVQFESEESSNVAIEKLNGSTVGDKQLYVGKFVKKSDRILP 184
Query: 211 GKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KH 265
G AR +++ NL +++ + +E F+ FG I S + D K
Sbjct: 185 GPD------------ARYTNLYMKNLDLDVSEATLQEKFSSFGKIVSLVIAKDNIGMSKG 232
Query: 266 IGFIEFIMPKHATHAVSTMNGHVFKSKPLKVT 297
GF+ + P A A+ MNG SK L V
Sbjct: 233 FGFVNYDNPDDAKRAMEAMNGSKLGSKILYVA 264
>gi|403216743|emb|CCK71239.1| hypothetical protein KNAG_0G01810 [Kazachstania naganishii CBS
8797]
Length = 596
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 91/310 (29%), Positives = 148/310 (47%), Gaps = 25/310 (8%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK+ W + D R N + + NL +DN+AL + F FG +
Sbjct: 114 KGKLCRIMWSQ---RDPSLRKKGHGN-------IFIKNLNQDIDNKALFDTFSVFGNILS 163
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
++A ++ +S+GF + F + A +A +NG L+ + + + L +R +
Sbjct: 164 SKIATDETGKSKGFGFVHFEEESAANEAIDALNGMLLNGQEIYVA-PHLTRKERDSQL-- 220
Query: 124 EEKQYKKDKVFVKNL-VETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYK 182
EE + V+VKN+ +ET DEE K F K G + V + R +GK KGFGF+ + +
Sbjct: 221 EETKAHFTNVYVKNIDLETTDEE-FKEFFGKIGTVTSVALERGPDGKLKGFGFVNYEDHN 279
Query: 183 AAEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLP 237
A KA+ E+NG + FV A+ I KK + + + + +FV NL
Sbjct: 280 DAVKAVEELNGAEFKDQELFVGRAQKKYERIQSLKKQYESTRLEKMAKYQGVNLFVKNLD 339
Query: 238 SNINNSEFEELFARFGTITSSSLVS-----DKHIGFIEFIMPKHATHAVSTMNGHVFKSK 292
+I++ + +E FA FG ITS ++ K GF+ F P+ AT A++ N + K
Sbjct: 340 DSIDDEKLQEEFAPFGNITSVKVMRTENGKSKGFGFVCFSSPEEATKAITEKNQQIVAGK 399
Query: 293 PLKVTLSGTK 302
PL V ++ K
Sbjct: 400 PLYVAIAQRK 409
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 84/276 (30%), Positives = 129/276 (46%), Gaps = 40/276 (14%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+PSV L + F G++ +RV R+ S G+A + F+ K+A ++
Sbjct: 49 LYVGELDPSVSEALLYDLFSPIGSVASIRVCRDAITKTSLGYAYVNFSDHEAGKQAIEKL 108
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N I K I + + P R K G +F+KNL + +D + L F FG
Sbjct: 109 NYTPIKGKLCRIMWSQRDPSLRKKGHG---------NIFIKNLNQDIDNKALFDTFSVFG 159
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ KI DE GKSKGFGF+ F AA +AI +NG ++ G++++
Sbjct: 160 NILSSKIATDETGKSKGFGFVHFEEESAANEAIDALNGMLLN-------------GQEIY 206
Query: 216 PKVKPPLLQPARKNK----------IFVANLPSNINNSEFEELFARFGTITSSSLVSD-- 263
V P L + R ++ ++V N+ + EF+E F + GT+TS +L
Sbjct: 207 --VAPHLTRKERDSQLEETKAHFTNVYVKNIDLETTDEEFKEFFGKIGTVTSVALERGPD 264
Query: 264 ---KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
K GF+ + A AV +NG FK + L V
Sbjct: 265 GKLKGFGFVNYEDHNDAVKAVEELNGAEFKDQELFV 300
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 52/88 (59%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L V NL+ S+D++ L EF FG + V+V R +N +S+GF + F++P EA KA
Sbjct: 328 YQGVNLFVKNLDDSIDDEKLQEEFAPFGNITSVKVMRTENGKSKGFGFVCFSSPEEATKA 387
Query: 92 RVEMNGHLIGSKPVIITFVELKPGQRSK 119
E N ++ KP+ + + K +RS+
Sbjct: 388 ITEKNQQIVAGKPLYVAIAQRKDVRRSQ 415
>gi|425772940|gb|EKV11320.1| Polyadenylate-binding protein [Penicillium digitatum PHI26]
gi|425781989|gb|EKV19920.1| Polyadenylate-binding protein [Penicillium digitatum Pd1]
Length = 736
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 84/283 (29%), Positives = 135/283 (47%), Gaps = 25/283 (8%)
Query: 22 ARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAII 80
A + NN+ + + L+V L+PSV L F G + +RV R+ S G+A +
Sbjct: 33 AAGDAANNQPHSAS-LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYV 91
Query: 81 VFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVE 140
+N A+ ++A ++N LI KP I + + P R G VF+KNL
Sbjct: 92 NYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQG---------NVFIKNLDN 142
Query: 141 TVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNS 200
+D + L F FGNI+ K+ +DE SKG+GF+ + + +AA AI +NG ++
Sbjct: 143 AIDNKALHDTFAAFGNILSCKVAQDEFANSKGYGFVHYETAEAANNAIKHVNGMLLNDKK 202
Query: 201 TFVSLAEIVPGKKVFPKVKPPLLQPARKN--KIFVANLPSNINNSEFEELFARFGTITSS 258
FV G + K + + + N I++ N+ I + EF +F FG ITS+
Sbjct: 203 VFV-------GHHISKKDRQSKFEEMKANFTNIYIKNIDLEITDDEFRVMFEAFGEITSA 255
Query: 259 SLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
+L D + GF+ + + A AV+ MN K++ L V
Sbjct: 256 TLSHDQDGKSRGFGFVNYANHESAEAAVAEMNEKEVKTQKLYV 298
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 70/265 (26%), Positives = 137/265 (51%), Gaps = 18/265 (6%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK W + D R + N + + NL+ ++DN+AL + F FG +
Sbjct: 112 KGKPCRIMWSQ---RDPALRKTGQGN-------VFIKNLDNAIDNKALHDTFAAFGNILS 161
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+VA+++ S+G+ + + T A A +NG L+ K V + K ++SK
Sbjct: 162 CKVAQDEFANSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKF--- 218
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
EE + +++KN+ + ++E + F FG I + D++GKS+GFGF+ + ++++
Sbjct: 219 EEMKANFTNIYIKNIDLEITDDEFRVMFEAFGEITSATLSHDQDGKSRGFGFVNYANHES 278
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAEIVPGK--KVFPKVKPPLLQPARKNK---IFVANLPS 238
AE A+ EMN + ++ +V A+ + ++ + + ++ A K + ++V NL
Sbjct: 279 AEAAVAEMNEKEVKTQKLYVGRAQKKHEREEELRKQYEAARMEKASKYQGVNLYVKNLTD 338
Query: 239 NINNSEFEELFARFGTITSSSLVSD 263
+I++ + +LF +GTITS+ ++ D
Sbjct: 339 DIDDEKLRDLFTPYGTITSAKVMRD 363
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/239 (20%), Positives = 98/239 (41%), Gaps = 72/239 (30%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+++ N++ + + F+ FG + ++ +++ +SRGF + + A+ A EMN
Sbjct: 228 IYIKNIDLEITDDEFRVMFEAFGEITSATLSHDQDGKSRGFGFVNYANHESAEAAVAEMN 287
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDK-----------VFVKNLVETVDEE 145
+ ++ + + + K +R + + KQY+ + ++VKNL + +D+E
Sbjct: 288 EKEVKTQKLYVGRAQKK-HEREEEL---RKQYEAARMEKASKYQGVNLYVKNLTDDIDDE 343
Query: 146 ELKSHFIKFGNIIEVKIVRD----------ENGKSKG----------------------- 172
+L+ F +G I K++RD E+ ++KG
Sbjct: 344 KLRDLFTPYGTITSAKVMRDAAERSPTPEAEDKETKGSEEKEVKTEETAEVKTEETTEEK 403
Query: 173 ------------------------FGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
FGF+ F S A KA+ EMN RM+ +V+LA+
Sbjct: 404 KTEEQGEASEEKKAEKKAFGKSKGFGFVCFSSPDEASKAVTEMNQRMVNAKPLYVALAQ 462
Score = 42.0 bits (97), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 29/46 (63%)
Query: 74 SRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSK 119
S+GF + F++P EA KA EMN ++ +KP+ + + K +RS+
Sbjct: 425 SKGFGFVCFSSPDEASKAVTEMNQRMVNAKPLYVALAQRKDVRRSQ 470
>gi|357465579|ref|XP_003603074.1| Poly(A)-binding protein [Medicago truncatula]
gi|355492122|gb|AES73325.1| Poly(A)-binding protein [Medicago truncatula]
Length = 622
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 80/279 (28%), Positives = 140/279 (50%), Gaps = 31/279 (11%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ ++D++AL + F FG + ++A + + S+G+ + F A+ A ++N
Sbjct: 114 IFIKNLDRAIDHKALYDTFSIFGNILSCKIAMDASGLSKGYGFVQFENEESAQSAIDKLN 173
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G L+ KPV + QR + K + V+VKNL E+V +++LK+ F ++G
Sbjct: 174 GMLLNDKPVYVGHF-----QRKQDRDNALSNAKFNNVYVKNLSESVTDDDLKNTFGEYGT 228
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFP 216
I ++RD +GKSK FGF+ F + AA +A+ +NG+ +V K
Sbjct: 229 ITSAVVMRDVDGKSKCFGFVNFENADAAAEAVEALNGKKFDDKEWYVG--------KALK 280
Query: 217 KVKPPLLQPARKNK-------------IFVANLPSNINNSEFEELFARFGTITSSSLVSD 263
K + L R + +++ NL ++ + + ELF+ FGT+TS ++ D
Sbjct: 281 KYERELELKERHEQSMKETVDKFYGANLYLKNLDDSVTDEKLSELFSEFGTVTSCKILRD 340
Query: 264 -----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVT 297
+ GF+ F P+ AT A++ MNG + KPL V
Sbjct: 341 PQGISRGSGFVAFSTPEEATRALAEMNGKMVAGKPLYVA 379
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 76/262 (29%), Positives = 129/262 (49%), Gaps = 22/262 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L+ V + L + F + G + VR+ R+ + +S G+ + F+ P +A KA +
Sbjct: 26 LYVGDLDHDVTDSQLYDLFNQIGQVVSVRICRDLASQQSLGYGYVNFSNPHDAAKAMDVL 85
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N + +KP+ I + P R +F+KNL +D + L F FG
Sbjct: 86 NFTPLNNKPIRIMYSHRDPSVRKSGAA---------NIFIKNLDRAIDHKALYDTFSIFG 136
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ KI D +G SKG+GF+QF + ++A+ AI ++NG ++ +V G
Sbjct: 137 NILSCKIAMDASGLSKGYGFVQFENEESAQSAIDKLNGMLLNDKPVYV-------GHFQR 189
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIE 270
+ + L A+ N ++V NL ++ + + + F +GTITS+ ++ D K GF+
Sbjct: 190 KQDRDNALSNAKFNNVYVKNLSESVTDDDLKNTFGEYGTITSAVVMRDVDGKSKCFGFVN 249
Query: 271 FIMPKHATHAVSTMNGHVFKSK 292
F A AV +NG F K
Sbjct: 250 FENADAAAEAVEALNGKKFDDK 271
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 114/234 (48%), Gaps = 21/234 (8%)
Query: 18 DDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGF 77
D + A SN + N VY V NL SV + L N F ++GT+ V R+ + +S+ F
Sbjct: 192 DRDNALSNAKFNNVY------VKNLSESVTDDDLKNTFGEYGTITSAVVMRDVDGKSKCF 245
Query: 78 AIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKV---- 133
+ F A +A +NG K + LK +R + +Q K+ V
Sbjct: 246 GFVNFENADAAAEAVEALNGKKFDDKEWYVGKA-LKKYERELELKERHEQSMKETVDKFY 304
Query: 134 ----FVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAII 189
++KNL ++V +E+L F +FG + KI+RD G S+G GF+ F + + A +A+
Sbjct: 305 GANLYLKNLDDSVTDEKLSELFSEFGTVTSCKILRDPQGISRGSGFVAFSTPEEATRALA 364
Query: 190 EMNGRMIQHNSTFVSLAEIVPGKKV-----FPKVKPPLLQP-ARKNKIFVANLP 237
EMNG+M+ +V+ A+ +K F +V+P + P A + + A +P
Sbjct: 365 EMNGKMVAGKPLYVAPAQKKEERKARLQAQFSQVRPVTMAPIAPRLPFYPAGVP 418
>gi|443895761|dbj|GAC73106.1| polyadenylate-binding protein [Pseudozyma antarctica T-34]
Length = 556
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 78/279 (27%), Positives = 140/279 (50%), Gaps = 14/279 (5%)
Query: 34 ENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARV 93
+ + + NL+ +DN+AL + F FG + +VA +++ S G+ + + T A A
Sbjct: 133 QGNIFIKNLDAGIDNKALHDTFAAFGNILSCKVATSESG-SLGYGFVHYETAEAADAAIK 191
Query: 94 EMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIK 153
+NG L+ K V +V ++ + EE + + V+ KN+ V +EE + F K
Sbjct: 192 HVNGMLLNDKKV---YVGHHIPRKERQAKIEESRARFTNVYCKNVDADVTDEEFEKLFTK 248
Query: 154 FGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPG-- 211
+G I + RDE+GKSKGFGF+ F ++ A+ A+ E++ + FV+ A+
Sbjct: 249 YGKITSCVLQRDEDGKSKGFGFVNFENHDEAQTAVDELHDSDFKGQKLFVARAQKKSERE 308
Query: 212 ---KKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS-----D 263
++ + K L + +++ N+P + ++ + FA FG ITS ++
Sbjct: 309 EELRRSYEAAKNEKLAKFQGVNLYLKNIPESYDDERLRDEFAPFGAITSCKIMRAPSGVS 368
Query: 264 KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
+ GF+ + P+ A AVS MNG + ++PL V L+ K
Sbjct: 369 RGFGFVCYSAPEEANKAVSEMNGKMLDNRPLYVALAQRK 407
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 79/267 (29%), Positives = 130/267 (48%), Gaps = 21/267 (7%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+PSV L F G + +RV R+ S G+A + F A+ ++A ++
Sbjct: 48 LYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNFLNAADGERAMEQL 107
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI ++P I + + P R G +F+KNL +D + L F FG
Sbjct: 108 NYSLIRNRPCRIMWSQRDPALRRTGQG---------NIFIKNLDAGIDNKALHDTFAAFG 158
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ E+G S G+GF+ + + +AA+ AI +NG ++ +V +P K+
Sbjct: 159 NILSCKVATSESG-SLGYGFVHYETAEAADAAIKHVNGMLLNDKKVYV--GHHIPRKERQ 215
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIE 270
K++ AR ++ N+ +++ + EFE+LF ++G ITS L D K GF+
Sbjct: 216 AKIEE---SRARFTNVYCKNVDADVTDEEFEKLFTKYGKITSCVLQRDEDGKSKGFGFVN 272
Query: 271 FIMPKHATHAVSTMNGHVFKSKPLKVT 297
F A AV ++ FK + L V
Sbjct: 273 FENHDEAQTAVDELHDSDFKGQKLFVA 299
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 48/83 (57%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L++ N+ S D++ L +EF FG + ++ R + SRGF + ++ P EA KA EMN
Sbjct: 331 LYLKNIPESYDDERLRDEFAPFGAITSCKIMRAPSGVSRGFGFVCYSAPEEANKAVSEMN 390
Query: 97 GHLIGSKPVIITFVELKPGQRSK 119
G ++ ++P+ + + K +R +
Sbjct: 391 GKMLDNRPLYVALAQRKDVRRQQ 413
>gi|409082274|gb|EKM82632.1| hypothetical protein AGABI1DRAFT_111221 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 671
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 78/269 (28%), Positives = 132/269 (49%), Gaps = 24/269 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+P+V L F G + +RV R+ S G+A + + A+ ++A ++
Sbjct: 44 LYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEQL 103
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI ++ I + + P R G VF+KNL E +D + L F+ FG
Sbjct: 104 NYSLIKNRACRIMWSQRDPALRKTGQG---------NVFIKNLDEAIDNKALHDTFVAFG 154
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
N++ K+ DE+G+SKG+GF+ + + +AA+ AI +NG ++ +V G +
Sbjct: 155 NVLSCKVATDEHGRSKGYGFVHYETAEAADNAIKSVNGMLLNDKKVYV-------GHHIS 207
Query: 216 PKVKPPLLQP--ARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGF 268
K + L A+ +++ NL + + EF ELF R+G +TSS + +D K GF
Sbjct: 208 RKERQSKLDEMKAQFTNLYIKNLDTEVTQEEFTELFTRYGNVTSSLVATDEEGKSKGFGF 267
Query: 269 IEFIMPKHATHAVSTMNGHVFKSKPLKVT 297
+ + + A AV ++ K K L V
Sbjct: 268 VNYERHEEAQRAVDELHDTDLKGKKLFVA 296
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 76/271 (28%), Positives = 141/271 (52%), Gaps = 13/271 (4%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ ++DN+AL + F FG + +VA +++ S+G+ + + T A A +NG
Sbjct: 134 IKNLDEAIDNKALHDTFVAFGNVLSCKVATDEHGRSKGYGFVHYETAEAADNAIKSVNGM 193
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ K V + + ++SK +E + + +++KNL V +EE F ++GN+
Sbjct: 194 LLNDKKVYVGHHISRKERQSK---LDEMKAQFTNLYIKNLDTEVTQEEFTELFTRYGNVT 250
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPG-----KK 213
+ DE GKSKGFGF+ + ++ A++A+ E++ ++ FV+ A+ ++
Sbjct: 251 SSLVATDEEGKSKGFGFVNYERHEEAQRAVDELHDTDLKGKKLFVARAQKKAEREDELRR 310
Query: 214 VFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGF 268
+ + K L + +++ NL + ++ + F FG ITS ++ D K GF
Sbjct: 311 SYEQAKLEKLSKYQGINLYIKNLEDDFDDDKLRAEFEPFGAITSCKVMRDEKGTSKGFGF 370
Query: 269 IEFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299
+ F P AT AV+ MN + +KPL V+L+
Sbjct: 371 VCFSSPDEATKAVAEMNNKMIGTKPLYVSLA 401
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 96/179 (53%), Gaps = 9/179 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L++ NL+ V + F ++G + VA ++ +S+GF + + EA++A E++
Sbjct: 225 LYIKNLDTEVTQEEFTELFTRYGNVTSSLVATDEEGKSKGFGFVNYERHEEAQRAVDELH 284
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKV--------FVKNLVETVDEEELK 148
+ K + + + K +R + +Q K +K+ ++KNL + D+++L+
Sbjct: 285 DTDLKGKKLFVARAQKK-AEREDELRRSYEQAKLEKLSKYQGINLYIKNLEDDFDDDKLR 343
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
+ F FG I K++RDE G SKGFGF+ F S A KA+ EMN +MI +VSLA+
Sbjct: 344 AEFEPFGAITSCKVMRDEKGTSKGFGFVCFSSPDEATKAVAEMNNKMIGTKPLYVSLAQ 402
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 52/88 (59%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L++ NLE D+ L EF+ FG + +V R++ S+GF + F++P EA KA
Sbjct: 323 YQGINLYIKNLEDDFDDDKLRAEFEPFGAITSCKVMRDEKGTSKGFGFVCFSSPDEATKA 382
Query: 92 RVEMNGHLIGSKPVIITFVELKPGQRSK 119
EMN +IG+KP+ ++ + + +R +
Sbjct: 383 VAEMNNKMIGTKPLYVSLAQRREVRRQQ 410
>gi|388582290|gb|EIM22595.1| polyadenylate binding protein [Wallemia sebi CBS 633.66]
Length = 637
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 81/279 (29%), Positives = 143/279 (51%), Gaps = 19/279 (6%)
Query: 34 ENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARV 93
+ + + NL+ ++DN+AL + F FG + +VA ++N SRG+ + + A A
Sbjct: 125 QGNIFIKNLDEAIDNKALHDTFAAFGNVLSCKVATDENGNSRGYGFVHYENGESASAAIQ 184
Query: 94 EMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIK 153
+NG L+ K V + K +++K +E++ + VF+KNL +VD+E+ K
Sbjct: 185 HVNGMLLNDKKVYVGHHVSKKERQAKI---DEQKSQFTNVFIKNLDVSVDDEKFKQILEP 241
Query: 154 FGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLA------- 206
+G I+ + +DE G S+GFGF+ + +++ A KA+ +N + F + A
Sbjct: 242 YGEILSAVVQKDEQGNSRGFGFVNYKNHEEAAKAVESLNEVEVDGKKIFAARAQKKNERE 301
Query: 207 -EIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-- 263
E+ ++ + + K L ++V NL + ++ F FGTITS+ ++ D
Sbjct: 302 EEL---RRNYEQAKLEKLAKYAGVNLYVKNLDDDFDDERLVGEFEPFGTITSAKIMRDEK 358
Query: 264 ---KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299
K GF+ F P AT AVS ++G + SKPL V+L+
Sbjct: 359 GTSKGFGFVCFSSPDEATKAVSELSGKMIGSKPLYVSLA 397
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 68/266 (25%), Positives = 128/266 (48%), Gaps = 24/266 (9%)
Query: 28 NNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPA 86
NN + L+V L+P+V L F G + +RV R+ S G+A + +
Sbjct: 31 NNGTPQSASLYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNLQ 90
Query: 87 EAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEE 146
+ ++A ++N LI ++ I + + P R G +F+KNL E +D +
Sbjct: 91 DGERALEQLNYSLIKNRACRIMWSQRDPALRKTGQG---------NIFIKNLDEAIDNKA 141
Query: 147 LKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLA 206
L F FGN++ K+ DENG S+G+GF+ + + ++A AI +NG ++ +V
Sbjct: 142 LHDTFAAFGNVLSCKVATDENGNSRGYGFVHYENGESASAAIQHVNGMLLNDKKVYV--- 198
Query: 207 EIVPGKKVFPKVKPPLL--QPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDK 264
G V K + + Q ++ +F+ NL ++++ +F+++ +G I S+ + D+
Sbjct: 199 ----GHHVSKKERQAKIDEQKSQFTNVFIKNLDVSVDDEKFKQILEPYGEILSAVVQKDE 254
Query: 265 H-----IGFIEFIMPKHATHAVSTMN 285
GF+ + + A AV ++N
Sbjct: 255 QGNSRGFGFVNYKNHEEAAKAVESLN 280
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 91/177 (51%), Gaps = 9/177 (5%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ SVD++ + +G + V +++ SRGF + + EA KA +N
Sbjct: 223 IKNLDVSVDDEKFKQILEPYGEILSAVVQKDEQGNSRGFGFVNYKNHEEAAKAVESLNEV 282
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKV--------FVKNLVETVDEEELKSH 150
+ K + + K +R + + +Q K +K+ +VKNL + D+E L
Sbjct: 283 EVDGKKIFAARAQ-KKNEREEELRRNYEQAKLEKLAKYAGVNLYVKNLDDDFDDERLVGE 341
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
F FG I KI+RDE G SKGFGF+ F S A KA+ E++G+MI +VSLA+
Sbjct: 342 FEPFGTITSAKIMRDEKGTSKGFGFVCFSSPDEATKAVSELSGKMIGSKPLYVSLAQ 398
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 66/119 (55%), Gaps = 5/119 (4%)
Query: 6 KILEASWDEGISDDEGARSNKENNKV-----YKENELHVNNLEPSVDNQALINEFKKFGT 60
KI A + +E R N E K+ Y L+V NL+ D++ L+ EF+ FGT
Sbjct: 288 KIFAARAQKKNEREEELRRNYEQAKLEKLAKYAGVNLYVKNLDDDFDDERLVGEFEPFGT 347
Query: 61 LRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSK 119
+ ++ R++ S+GF + F++P EA KA E++G +IGSKP+ ++ + + +R +
Sbjct: 348 ITSAKIMRDEKGTSKGFGFVCFSSPDEATKAVSELSGKMIGSKPLYVSLAQRRDVRRQQ 406
>gi|426200105|gb|EKV50029.1| hypothetical protein AGABI2DRAFT_190442 [Agaricus bisporus var.
bisporus H97]
Length = 673
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 78/269 (28%), Positives = 132/269 (49%), Gaps = 24/269 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+P+V L F G + +RV R+ S G+A + + A+ ++A ++
Sbjct: 44 LYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEQL 103
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI ++ I + + P R G VF+KNL E +D + L F+ FG
Sbjct: 104 NYSLIKNRACRIMWSQRDPALRKTGQG---------NVFIKNLDEAIDNKALHDTFVAFG 154
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
N++ K+ DE+G+SKG+GF+ + + +AA+ AI +NG ++ +V G +
Sbjct: 155 NVLSCKVATDEHGRSKGYGFVHYETAEAADNAIKSVNGMLLNDKKVYV-------GHHIS 207
Query: 216 PKVKPPLLQP--ARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGF 268
K + L A+ +++ NL + + EF ELF R+G +TSS + +D K GF
Sbjct: 208 RKERQSKLDEMKAQFTNLYIKNLDTEVTQEEFTELFTRYGNVTSSLVATDEEGKSKGFGF 267
Query: 269 IEFIMPKHATHAVSTMNGHVFKSKPLKVT 297
+ + + A AV ++ K K L V
Sbjct: 268 VNYERHEEAQRAVDELHDTDLKGKKLFVA 296
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 77/279 (27%), Positives = 144/279 (51%), Gaps = 19/279 (6%)
Query: 34 ENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARV 93
+ + + NL+ ++DN+AL + F FG + +VA +++ S+G+ + + T A A
Sbjct: 129 QGNVFIKNLDEAIDNKALHDTFVAFGNVLSCKVATDEHGRSKGYGFVHYETAEAADNAIK 188
Query: 94 EMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIK 153
+NG L+ K V + + ++SK +E + + +++KNL V +EE F +
Sbjct: 189 SVNGMLLNDKKVYVGHHISRKERQSK---LDEMKAQFTNLYIKNLDTEVTQEEFTELFTR 245
Query: 154 FGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLA------- 206
+GN+ + DE GKSKGFGF+ + ++ A++A+ E++ ++ FV+ A
Sbjct: 246 YGNVTSSLVATDEEGKSKGFGFVNYERHEEAQRAVDELHDTDLKGKKLFVARAQKKAERE 305
Query: 207 -EIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-- 263
E+ ++ + + K L + +++ NL + ++ + F FG ITS ++ D
Sbjct: 306 DEL---RRSYEQAKLEKLSKYQGVNLYIKNLEDDFDDDKLRAEFEPFGAITSCKVMRDEK 362
Query: 264 ---KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299
K GF+ F P AT AV+ MN + +KPL V+L+
Sbjct: 363 GTSKGFGFVCFSSPDEATKAVAEMNNKMIGTKPLYVSLA 401
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 96/179 (53%), Gaps = 9/179 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L++ NL+ V + F ++G + VA ++ +S+GF + + EA++A E++
Sbjct: 225 LYIKNLDTEVTQEEFTELFTRYGNVTSSLVATDEEGKSKGFGFVNYERHEEAQRAVDELH 284
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKV--------FVKNLVETVDEEELK 148
+ K + + + K +R + +Q K +K+ ++KNL + D+++L+
Sbjct: 285 DTDLKGKKLFVARAQKK-AEREDELRRSYEQAKLEKLSKYQGVNLYIKNLEDDFDDDKLR 343
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
+ F FG I K++RDE G SKGFGF+ F S A KA+ EMN +MI +VSLA+
Sbjct: 344 AEFEPFGAITSCKVMRDEKGTSKGFGFVCFSSPDEATKAVAEMNNKMIGTKPLYVSLAQ 402
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 52/88 (59%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L++ NLE D+ L EF+ FG + +V R++ S+GF + F++P EA KA
Sbjct: 323 YQGVNLYIKNLEDDFDDDKLRAEFEPFGAITSCKVMRDEKGTSKGFGFVCFSSPDEATKA 382
Query: 92 RVEMNGHLIGSKPVIITFVELKPGQRSK 119
EMN +IG+KP+ ++ + + +R +
Sbjct: 383 VAEMNNKMIGTKPLYVSLAQRREVRRQQ 410
>gi|344228406|gb|EGV60292.1| hypothetical protein CANTEDRAFT_136776 [Candida tenuis ATCC 10573]
Length = 647
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 93/309 (30%), Positives = 149/309 (48%), Gaps = 23/309 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
+G+ W + D R N E N + + NL P++DN+AL + F FG +
Sbjct: 118 EGRPCRIMWSQ---RDPSLRRNGEGN-------IFIKNLHPAIDNKALHDTFSAFGRILS 167
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+VA ++ S+ F + + T A+ A +NG L+ + V + K + SK
Sbjct: 168 CKVATDELGNSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHVSKKDRESKF--- 224
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
EE + VFVKNL ++ELK F +G I + +D GKSKGFGF+ F ++
Sbjct: 225 EEMKANFTNVFVKNLAPEYTDQELKELFSAYGPITSSYLEKDLEGKSKGFGFVNFDNHND 284
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A KA+ E+N + I +V A+ + ++ + K L + +F+ NL
Sbjct: 285 AVKAVDELNNKEIAGQPIYVGRAQKKRERMEELRRQYEATKLEKLSKYQGVNLFIKNLDD 344
Query: 239 NINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKP 293
I++ + E F FG ITS+ ++ D K GF+ F P+ AT A++ MN + + KP
Sbjct: 345 TIDSEKLENEFKPFGNITSARVMVDEQGKSKGFGFVCFSSPEEATKAITEMNQRMVEGKP 404
Query: 294 LKVTLSGTK 302
L V L+ K
Sbjct: 405 LYVALAQRK 413
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 82/268 (30%), Positives = 123/268 (45%), Gaps = 24/268 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L SV+ L F G + +RV R+ +S G+A + F + ++A ++
Sbjct: 53 LYVGELNTSVNEALLFEIFSPIGQVSSIRVCRDAVTKKSLGYAYVNFVKFDDGEQAIEDL 112
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI +P I + + P R G +F+KNL +D + L F FG
Sbjct: 113 NYSLIEGRPCRIMWSQRDPSLRRNGEG---------NIFIKNLHPAIDNKALHDTFSAFG 163
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
I+ K+ DE G SK FGF+ + + +AAE AI +NG ++ FV GK V
Sbjct: 164 RILSCKVATDELGNSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFV-------GKHVS 216
Query: 216 PKVKPPLLQPARKN--KIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGF 268
K + + + N +FV NL + E +ELF+ +G ITSS L D K GF
Sbjct: 217 KKDRESKFEEMKANFTNVFVKNLAPEYTDQELKELFSAYGPITSSYLEKDLEGKSKGFGF 276
Query: 269 IEFIMPKHATHAVSTMNGHVFKSKPLKV 296
+ F A AV +N +P+ V
Sbjct: 277 VNFDNHNDAVKAVDELNNKEIAGQPIYV 304
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 53/88 (60%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L + NL+ ++D++ L NEFK FG + RV ++ +S+GF + F++P EA KA
Sbjct: 332 YQGVNLFIKNLDDTIDSEKLENEFKPFGNITSARVMVDEQGKSKGFGFVCFSSPEEATKA 391
Query: 92 RVEMNGHLIGSKPVIITFVELKPGQRSK 119
EMN ++ KP+ + + K +RS+
Sbjct: 392 ITEMNQRMVEGKPLYVALAQRKDVRRSQ 419
>gi|296424904|ref|XP_002841985.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295638239|emb|CAZ86176.1| unnamed protein product [Tuber melanosporum]
Length = 374
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 79/264 (29%), Positives = 124/264 (46%), Gaps = 20/264 (7%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V LEPSV L F G + +RV R+ S G++ + +N A+ ++A E+
Sbjct: 55 LYVGELEPSVTEAMLFELFSTIGNVASIRVCRDAVTRRSLGYSYVNYNNTADGERALEEL 114
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI +P I + + P R G VF+KNL +D + L F FG
Sbjct: 115 NYTLIKGRPCRIMWSQRDPALRKTGQG---------NVFIKNLDTAIDNKALHDTFAAFG 165
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ +DE S+G+GF+ + + +AA AI +NG ++ FV +P K
Sbjct: 166 NILSCKVAQDEFSNSRGYGFVHYETAEAANNAIKHVNGMLLNEKKVFV--GHHIPKKDRQ 223
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKH-----IGFIE 270
K A ++V N+ + + EF +F +G ITS+SL D+ GF+
Sbjct: 224 SKFDE---MKANFTNVYVKNIDPEVTDEEFRTMFENYGPITSASLSRDQDGVSRGFGFVN 280
Query: 271 FIMPKHATHAVSTMNGHVFKSKPL 294
F +HA AV ++ K + L
Sbjct: 281 FQEHQHAAKAVEELHESELKGQTL 304
>gi|367008356|ref|XP_003678678.1| hypothetical protein TDEL_0A01350 [Torulaspora delbrueckii]
gi|359746335|emb|CCE89467.1| hypothetical protein TDEL_0A01350 [Torulaspora delbrueckii]
Length = 588
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 82/276 (29%), Positives = 137/276 (49%), Gaps = 13/276 (4%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL P +DN+AL + F FG + ++A ++ SRGF + F AK+A +N
Sbjct: 132 IFIKNLHPDIDNKALHDTFSVFGNILSCKIATDEAGNSRGFGFVHFEDDEAAKEAIDAIN 191
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G L+ + V + K ++SK +E + V+VKN+ +EE + F K G
Sbjct: 192 GMLLNGQEVYVAQHVSKKDRQSKL---DEAKANFTNVYVKNIHPDTGDEEFEEFFTKVGP 248
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPG 211
I + +D GK +GFGF+ + ++ A KA+ E+N + + V A+ +
Sbjct: 249 ITSAHLEKDNEGKLRGFGFVNYENHNDAAKAVEELNETDFKGQTLHVGRAQKKHERLQEL 308
Query: 212 KKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS-----DKHI 266
KK + + L+ + +FV NL I++ + EE FA +GTITS ++ K
Sbjct: 309 KKQYEAFRLEKLEKYQGVNLFVKNLDDTIDDQKLEEEFAPYGTITSVKVMRSENGKSKGF 368
Query: 267 GFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ F P+ AT A++ N + KPL V ++ K
Sbjct: 369 GFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRK 404
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 84/268 (31%), Positives = 127/268 (47%), Gaps = 24/268 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+PSV L + F G++ +RV R+ S G+A + FN K A ++
Sbjct: 44 LYVGELDPSVSEALLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGKTAIEKL 103
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N I P I + + P R K G +F+KNL +D + L F FG
Sbjct: 104 NYAPIKGVPCRIMWSQRDPSMRKKGSG---------NIFIKNLHPDIDNKALHDTFSVFG 154
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ KI DE G S+GFGF+ F +AA++AI +NG ++ +V+ + V
Sbjct: 155 NILSCKIATDEAGNSRGFGFVHFEDDEAAKEAIDAINGMLLNGQEVYVA-------QHVS 207
Query: 216 PKVKPPLLQPARKN--KIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGF 268
K + L A+ N ++V N+ + + EFEE F + G ITS+ L D + GF
Sbjct: 208 KKDRQSKLDEAKANFTNVYVKNIHPDTGDEEFEEFFTKVGPITSAHLEKDNEGKLRGFGF 267
Query: 269 IEFIMPKHATHAVSTMNGHVFKSKPLKV 296
+ + A AV +N FK + L V
Sbjct: 268 VNYENHNDAAKAVEELNETDFKGQTLHV 295
Score = 70.9 bits (172), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 54/88 (61%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L V NL+ ++D+Q L EF +GT+ V+V R++N +S+GF + F+TP EA KA
Sbjct: 323 YQGVNLFVKNLDDTIDDQKLEEEFAPYGTITSVKVMRSENGKSKGFGFVCFSTPEEATKA 382
Query: 92 RVEMNGHLIGSKPVIITFVELKPGQRSK 119
E N ++ KP+ + + K +RS+
Sbjct: 383 ITEKNQQIVAGKPLYVAIAQRKDVRRSQ 410
>gi|358334962|dbj|GAA31742.2| polyadenylate-binding protein, partial [Clonorchis sinensis]
Length = 738
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 79/270 (29%), Positives = 130/270 (48%), Gaps = 28/270 (10%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L P L ++F + GT+ R+ R+ S G+ + F P +A++A +
Sbjct: 3 LYVGDLHPLATEALLYSKFSEIGTVLSARICRDLATRNSLGYGYVNFEEPKDAERALENL 62
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N +P+ I + + P R + K +F+KNL +T+D+++L F G
Sbjct: 63 NYESFMGRPIRIMWSQRDPSLR---------KSGKGNIFIKNLDKTIDQKQLYDTFSFIG 113
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPG---K 212
I+ KI DE+G SKG+GF+ F + AE+AI ++NG MI N V + + +P K
Sbjct: 114 KILSCKIAMDEHGNSKGYGFVHFEKEECAERAIEKINGMMI--NDRVVYVGKFIPSSDRK 171
Query: 213 KVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIG 267
K+ R N I+V N P + + + ++F+ FG I S + + K G
Sbjct: 172 SASGKL--------RFNNIYVKNFPPDTTDEKLRDMFSEFGEIKSCCVEKNPEGKSKGFG 223
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKVT 297
F+ F P HA AV M+G + L +
Sbjct: 224 FVCFHDPDHAEQAVRVMHGKEINGRALYAS 253
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 75/275 (27%), Positives = 140/275 (50%), Gaps = 16/275 (5%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ ++D + L + F G + ++A +++ S+G+ + F A++A ++NG
Sbjct: 93 IKNLDKTIDQKQLYDTFSFIGKILSCKIAMDEHGNSKGYGFVHFEKEECAERAIEKINGM 152
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
+I + ++ + P K + + + ++VKN +E+L+ F +FG I
Sbjct: 153 MINDR--VVYVGKFIPSSDRKSA---SGKLRFNNIYVKNFPPDTTDEKLRDMFSEFGEIK 207
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKV 218
+ ++ GKSKGFGF+ F AE+A+ M+G+ I + + S A+ ++ K
Sbjct: 208 SCCVEKNPEGKSKGFGFVCFHDPDHAEQAVRVMHGKEINGRALYASRAQRKEERQEELKQ 267
Query: 219 KPPLLQPARKNK------IFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIG 267
+ + R +K ++V NL NI++ +E F+ +G ITS+ +++D K G
Sbjct: 268 RLEKQRAERLSKYVPGVNLYVKNLDDNIDDERLKEAFSHYGPITSAKVMTDANGRSKGFG 327
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F+ F P+ A AV+ MN + SKPL V L+ K
Sbjct: 328 FVCFTQPEQAARAVTEMNATLVGSKPLYVALAQRK 362
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 96/181 (53%), Gaps = 8/181 (4%)
Query: 35 NELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVE 94
N ++V N P ++ L + F +FG ++ V +N +S+GF + F+ P A++A
Sbjct: 180 NNIYVKNFPPDTTDEKLRDMFSEFGEIKSCCVEKNPEGKSKGFGFVCFHDPDHAEQAVRV 239
Query: 95 MNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKD--------KVFVKNLVETVDEEE 146
M+G I + + + + K ++ + EKQ + ++VKNL + +D+E
Sbjct: 240 MHGKEINGRALYASRAQRKEERQEELKQRLEKQRAERLSKYVPGVNLYVKNLDDNIDDER 299
Query: 147 LKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLA 206
LK F +G I K++ D NG+SKGFGF+ F + A +A+ EMN ++ +V+LA
Sbjct: 300 LKEAFSHYGPITSAKVMTDANGRSKGFGFVCFTQPEQAARAVTEMNATLVGSKPLYVALA 359
Query: 207 E 207
+
Sbjct: 360 Q 360
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 57/103 (55%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L+V NL+ ++D++ L F +G + +V + N S+GF + F P +A +A EMN
Sbjct: 286 LYVKNLDDNIDDERLKEAFSHYGPITSAKVMTDANGRSKGFGFVCFTQPEQAARAVTEMN 345
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLV 139
L+GSKP+ + + K +R+K + +++ + + V ++
Sbjct: 346 ATLVGSKPLYVALAQRKEDRRAKLIAEHQQRLAQYRSPVTQML 388
>gi|341900148|gb|EGT56083.1| hypothetical protein CAEBREN_04295 [Caenorhabditis brenneri]
Length = 649
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 77/246 (31%), Positives = 123/246 (50%), Gaps = 25/246 (10%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVAR-NKNDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V+ L +F G + +RV R N S G+A + F PA+A++
Sbjct: 29 YTMASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAER 88
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN + KP+ I + + P R G +F+KNL + +D + +
Sbjct: 89 AMDTMNFEALHGKPMRIMWSQRDPAMRRSGAG---------NIFIKNLDKVIDNKSIYDT 139
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVP 210
F FGNI+ K+ DE G SKG+GF+ F + +AA+ AI ++NG ++ FV
Sbjct: 140 FSLFGNILSCKVAIDEEGSSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVG------ 193
Query: 211 GKKVFPKVK--PPLLQPARK-NKIFVANLPSNINNSEFEELFARFGTITSSSLVS----D 263
K P+ + L + A+K ++V N + N E+LFA++GTITS +++
Sbjct: 194 --KFQPRAQRNRELGETAKKYTNVYVKNFGDHYNKESLEKLFAKYGTITSCDVMTSDGKS 251
Query: 264 KHIGFI 269
K GF+
Sbjct: 252 KGFGFV 257
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 88/313 (28%), Positives = 156/313 (49%), Gaps = 32/313 (10%)
Query: 5 GKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDV 64
GK + W + D R + N + + NL+ +DN+++ + F FG +
Sbjct: 100 GKPMRIMWSQ---RDPAMRRSGAGN-------IFIKNLDKVIDNKSIYDTFSLFGNILSC 149
Query: 65 RVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPE 124
+VA ++ S+G+ + F T A+ A ++NG L+ K V + + + QR++ +G
Sbjct: 150 KVAIDEEGSSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPR-AQRNRELGET 208
Query: 125 EKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAA 184
K+Y V+VKN + ++E L+ F K+G I ++ + GKSKGFGF+ F + A
Sbjct: 209 AKKYTN--VYVKNFGDHYNKESLEKLFAKYGTITSCDVMTSD-GKSKGFGFVAFAEPEEA 265
Query: 185 EKAIIEMNGRMIQHNSTFVSL----------AEIVPGKKVFPKVKPPLLQPARKNKIFVA 234
E A+ +N ++ + + + AE+ KK + K +Q + ++V
Sbjct: 266 EAAVQALNDSPVEGSDLKLHVCRAQKKSERHAEL---KKKHEQHKVERMQKYQGVNLYVK 322
Query: 235 NLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVF 289
NL ++++ ++ F FG ITS+ +++D K GF+ F P+ AT AV+ MN +
Sbjct: 323 NLDESVDDEALKKQFESFGNITSAKVMTDENGRSKGFGFVCFEKPEEATTAVTEMNSKMV 382
Query: 290 KSKPLKVTLSGTK 302
SKPL V L+ K
Sbjct: 383 CSKPLYVALAQRK 395
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 54/93 (58%)
Query: 27 ENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPA 86
E + Y+ L+V NL+ SVD++AL +F+ FG + +V ++N S+GF + F P
Sbjct: 309 ERMQKYQGVNLYVKNLDESVDDEALKKQFESFGNITSAKVMTDENGRSKGFGFVCFEKPE 368
Query: 87 EAKKARVEMNGHLIGSKPVIITFVELKPGQRSK 119
EA A EMN ++ SKP+ + + K +R++
Sbjct: 369 EATTAVTEMNSKMVCSKPLYVALAQRKEDRRAQ 401
>gi|302811197|ref|XP_002987288.1| hypothetical protein SELMODRAFT_269256 [Selaginella moellendorffii]
gi|302815025|ref|XP_002989195.1| hypothetical protein SELMODRAFT_269487 [Selaginella moellendorffii]
gi|300143095|gb|EFJ09789.1| hypothetical protein SELMODRAFT_269487 [Selaginella moellendorffii]
gi|300144923|gb|EFJ11603.1| hypothetical protein SELMODRAFT_269256 [Selaginella moellendorffii]
Length = 567
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 86/273 (31%), Positives = 135/273 (49%), Gaps = 26/273 (9%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
+ L+V +L+PSV+ + + FK+ G + VR+ R+ S G+A + +N +A +
Sbjct: 12 FASTALYVGDLDPSVNEAQIFDIFKQIGNVMSVRLCRDMVTKRSLGYAYVNYNNTQDASR 71
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A E+N + KPV I F P R G +FVKNL +++D + L
Sbjct: 72 AIEELNFMPVNGKPVRIMFSYRDPSIRKSGSG---------NLFVKNLDKSIDNKALHDL 122
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVP 210
F +G I+ KI D + SKG GF+QF + AA AI ++NG + FV
Sbjct: 123 FSPYGKILSCKIALDVSNVSKGHGFVQFDTEDAAHTAIEKINGTTLHDKQLFV------- 175
Query: 211 GKKVFPKVKPPLLQPARK-NKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----K 264
G V + + P PA K N +FV NL + + ++LF FG I+S+ ++ + K
Sbjct: 176 GPFVRRQERDP---PASKFNNVFVKNLSEITTDEDLQKLFGVFGPISSAVVMKEVDGKSK 232
Query: 265 HIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVT 297
GF+ F P+ A AV ++G F+ K L V+
Sbjct: 233 CFGFVNFENPEDAVKAVEDLHGTTFQDKELYVS 265
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 84/279 (30%), Positives = 145/279 (51%), Gaps = 24/279 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L V NL+ S+DN+AL + F +G + ++A + ++ S+G + F+T A A ++N
Sbjct: 105 LFVKNLDKSIDNKALHDLFSPYGKILSCKIALDVSNVSKGHGFVQFDTEDAAHTAIEKIN 164
Query: 97 GHLIGSKPVII-TFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
G + K + + FV + +R P K + VFVKNL E +E+L+ F FG
Sbjct: 165 GTTLHDKQLFVGPFVRRQ--ERDPPAS------KFNNVFVKNLSEITTDEDLQKLFGVFG 216
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
I ++++ +GKSK FGF+ F + + A KA+ +++G Q +VS A+ ++
Sbjct: 217 PISSAVVMKEVDGKSKCFGFVNFENPEDAVKAVEDLHGTTFQDKELYVSRAQKKNEREAE 276
Query: 216 PKVKPPLLQPARKNK-------IFVANLPSNINNSEFEELFARFGTITSSSLVSD----- 263
K K + RK+ +++ NL I++ + +++F+ FG +TS ++ D
Sbjct: 277 LKAK---FEHERKDTEDKSPTNLYLKNLDDGIDDEKLKDMFSAFGNVTSCKVMRDPLGHS 333
Query: 264 KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
K GF+ F A AV+ MNG + SKPL V ++ K
Sbjct: 334 KGSGFVAFSTSDAALRAVAQMNGKMIGSKPLYVAMAQKK 372
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 99/192 (51%), Gaps = 8/192 (4%)
Query: 23 RSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVF 82
R + + K N + V NL ++ L F FG + V + + +S+ F + F
Sbjct: 180 RRQERDPPASKFNNVFVKNLSEITTDEDLQKLFGVFGPISSAVVMKEVDGKSKCFGFVNF 239
Query: 83 NTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDK-------VFV 135
P +A KA +++G K + ++ + K +R + + + +KD +++
Sbjct: 240 ENPEDAVKAVEDLHGTTFQDKELYVSRAQ-KKNEREAELKAKFEHERKDTEDKSPTNLYL 298
Query: 136 KNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRM 195
KNL + +D+E+LK F FGN+ K++RD G SKG GF+ F + AA +A+ +MNG+M
Sbjct: 299 KNLDDGIDDEKLKDMFSAFGNVTSCKVMRDPLGHSKGSGFVAFSTSDAALRAVAQMNGKM 358
Query: 196 IQHNSTFVSLAE 207
I +V++A+
Sbjct: 359 IGSKPLYVAMAQ 370
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 48/83 (57%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L++ NL+ +D++ L + F FG + +V R+ S+G + F+T A +A +MN
Sbjct: 296 LYLKNLDDGIDDEKLKDMFSAFGNVTSCKVMRDPLGHSKGSGFVAFSTSDAALRAVAQMN 355
Query: 97 GHLIGSKPVIITFVELKPGQRSK 119
G +IGSKP+ + + K +++K
Sbjct: 356 GKMIGSKPLYVAMAQKKEERKAK 378
>gi|353227476|emb|CCA77984.1| related to mRNA polyadenylate-binding protein PAB1 [Piriformospora
indica DSM 11827]
Length = 693
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 80/286 (27%), Positives = 143/286 (50%), Gaps = 33/286 (11%)
Query: 34 ENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARV 93
+ + + NL+ +DN+AL + F FG + +VA ++ S+G+ + + T A A
Sbjct: 200 QGNIFIKNLDEGIDNKALHDTFVAFGNVLSCKVAVDEQGNSKGYGFVHYETAEAADAAIK 259
Query: 94 EMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDK-------VFVKNLVETVDEEE 146
++G L+ K V + + + +E+Q K D+ ++VKNL +DE+E
Sbjct: 260 AVDGMLLNDKKVYV----------GRHIPRKERQSKLDEIRAQFTNIYVKNLDTEIDEDE 309
Query: 147 LKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLA 206
+ F +G I + D +GKSKGFGF+ + +++ A+KA+ +N + I FV A
Sbjct: 310 FRKLFEPYGTITSAVLNLDADGKSKGFGFVNYETHEMAQKAVDALNEKDINGKKLFVGRA 369
Query: 207 --------EIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSS 258
E+ ++ F K L + +++ N+ ++++ + F +GTITSS
Sbjct: 370 QKRNERDEEL---RRTFDAAKMERLAKLQGVNLYIKNIDDDMDDEKLRAEFEPYGTITSS 426
Query: 259 SLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299
++ D K GF+ F P AT A++ MN + SKPL V+L+
Sbjct: 427 KIMRDDKGVSKGFGFVCFSTPDEATRAIAEMNNKMIGSKPLYVSLA 472
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 77/257 (29%), Positives = 129/257 (50%), Gaps = 21/257 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+PSV L F G + +RV R+ S G+A + + ++ ++A ++
Sbjct: 112 LYVGELDPSVTEAILFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNSSDGERALEQL 171
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI KP ++ + QR P ++ + +F+KNL E +D + L F+ FG
Sbjct: 172 NYSLIKGKPWHVSRIMWS--QRD----PALRKTGQGNIFIKNLDEGIDNKALHDTFVAFG 225
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
N++ K+ DE G SKG+GF+ + + +AA+ AI ++G ++ +V G+ +
Sbjct: 226 NVLSCKVAVDEQGNSKGYGFVHYETAEAADAAIKAVDGMLLNDKKVYV-------GRHIP 278
Query: 216 PKVKPPLLQPARKN--KIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGF 268
K + L R I+V NL + I+ EF +LF +GTITS+ L D K GF
Sbjct: 279 RKERQSKLDEIRAQFTNIYVKNLDTEIDEDEFRKLFEPYGTITSAVLNLDADGKSKGFGF 338
Query: 269 IEFIMPKHATHAVSTMN 285
+ + + A AV +N
Sbjct: 339 VNYETHEMAQKAVDALN 355
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 95/179 (53%), Gaps = 9/179 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
++V NL+ +D F+ +GT+ + + + +S+GF + + T A+KA +N
Sbjct: 296 IYVKNLDTEIDEDEFRKLFEPYGTITSAVLNLDADGKSKGFGFVNYETHEMAQKAVDALN 355
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKV--------FVKNLVETVDEEELK 148
I K + + + K +R + + K +++ ++KN+ + +D+E+L+
Sbjct: 356 EKDINGKKLFVGRAQ-KRNERDEELRRTFDAAKMERLAKLQGVNLYIKNIDDDMDDEKLR 414
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
+ F +G I KI+RD+ G SKGFGF+ F + A +AI EMN +MI +VSLA+
Sbjct: 415 AEFEPYGTITSSKIMRDDKGVSKGFGFVCFSTPDEATRAIAEMNNKMIGSKPLYVSLAQ 473
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 52/83 (62%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L++ N++ +D++ L EF+ +GT+ ++ R+ S+GF + F+TP EA +A EMN
Sbjct: 399 LYIKNIDDDMDDEKLRAEFEPYGTITSSKIMRDDKGVSKGFGFVCFSTPDEATRAIAEMN 458
Query: 97 GHLIGSKPVIITFVELKPGQRSK 119
+IGSKP+ ++ + + +R +
Sbjct: 459 NKMIGSKPLYVSLAQRRDVRRQQ 481
>gi|328715672|ref|XP_001946271.2| PREDICTED: polyadenylate-binding protein 1-like [Acyrthosiphon
pisum]
Length = 964
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 83/248 (33%), Positives = 134/248 (54%), Gaps = 15/248 (6%)
Query: 66 VARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVII-TFVELKPGQRSKPVGPE 124
VA+++ S+G+ + F T A ++ ++NG L+ K V + FV R K +G +
Sbjct: 435 VAQDETGNSKGYGFVHFETKQSATQSIEKVNGMLLNGKKVFVGRFV--GRNDREKELGQQ 492
Query: 125 EKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAA 184
K Y V++KN+ E V+E+EL F K+G I K++ ++G S+GFGF+ F K A
Sbjct: 493 AKLYTN--VYIKNIDENVNEKELFEMFKKYGTITSCKVMFKDDGSSRGFGFVAFEDPKEA 550
Query: 185 EKAIIEMNGRMIQHNST-FVSLAEIVPGKKVFPKVKPPLLQPARKNK-----IFVANLPS 238
EKA+ E++G+ T +V+ A+ ++ K K + R N+ ++V NL
Sbjct: 551 EKAVTELHGKKSPEGKTYYVNRAQKKTERQQELKRKFEQYKIERINRYQGVNLYVKNLDD 610
Query: 239 NINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
I++ F+ FGTI S+ ++ D K GF+ F P+ AT AV+ MNG + +KPL
Sbjct: 611 TIDDERLRREFSAFGTIKSAKVMMDDGRSKGFGFVYFSSPEEATKAVTDMNGRIVGTKPL 670
Query: 295 KVTLSGTK 302
VTL+ K
Sbjct: 671 YVTLAQRK 678
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 67/222 (30%), Positives = 113/222 (50%), Gaps = 22/222 (9%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+++ N++ +V+ + L FKK+GT+ +V + SRGF + F P EA+KA E++
Sbjct: 499 VYIKNIDENVNEKELFEMFKKYGTITSCKVMFKDDGSSRGFGFVAFEDPKEAEKAVTELH 558
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKV--------FVKNLVETVDEEELK 148
G K +R + + + +QYK +++ +VKNL +T+D+E L+
Sbjct: 559 GKKSPEGKTYYVNRAQKKTERQQELKRKFEQYKIERINRYQGVNLYVKNLDDTIDDERLR 618
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEI 208
F FG I K++ D+ G+SKGFGF+ F S + A KA+ +MNGR++ +V+LA+
Sbjct: 619 REFSAFGTIKSAKVMMDD-GRSKGFGFVYFSSPEEATKAVTDMNGRIVGTKPLYVTLAQR 677
Query: 209 VPGKKVFPKVK-------------PPLLQPARKNKIFVANLP 237
+K + P+ QP N FV +P
Sbjct: 678 KKDRKAHLDSQYSQRNTNMRMQSIGPIYQPGASNGYFVPTIP 719
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 56/87 (64%), Gaps = 1/87 (1%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L+V NL+ ++D++ L EF FGT++ +V + + S+GF + F++P EA KA
Sbjct: 598 YQGVNLYVKNLDDTIDDERLRREFSAFGTIKSAKVMMD-DGRSKGFGFVYFSSPEEATKA 656
Query: 92 RVEMNGHLIGSKPVIITFVELKPGQRS 118
+MNG ++G+KP+ +T + K +++
Sbjct: 657 VTDMNGRIVGTKPLYVTLAQRKKDRKA 683
>gi|443926079|gb|ELU44821.1| polyadenylate-binding protein [Rhizoctonia solani AG-1 IA]
Length = 593
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 81/276 (29%), Positives = 144/276 (52%), Gaps = 13/276 (4%)
Query: 34 ENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARV 93
+ + + NL+ ++DN+AL + F FG + +VA ++ +SRG+ + + T A+ A
Sbjct: 240 QGNIFIKNLDEAIDNKALHDTFAAFGNVLSCKVATDETGKSRGYGYVHYETAESAEAAIK 299
Query: 94 EMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIK 153
+N L+ K V FV ++ + +E + + ++VKNL + E E + F +
Sbjct: 300 AVNRMLLNDKQV---FVGHHISRKERQSQIDEARAQFTNIYVKNLDTDITEAEFRVMFEE 356
Query: 154 FGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKK 213
FGNI + D GKS+GFGF+ + +++ AE+A+ EM+ + I+ FV A+ ++
Sbjct: 357 FGNITSAVLQTDNEGKSRGFGFVNYENHEEAERAVNEMHEKEIKGKVLFVGRAQKKSERQ 416
Query: 214 VFPKVKPPLLQPARKNK-----IFVANLPSNINNSEFEELFARFGTITSSSLVSD----- 263
+ R+NK ++V NL ++++ + F FGTITS ++ +
Sbjct: 417 SELARSHEAAKQERQNKYAGVNLYVKNLDDDVDDDKLRAEFEAFGTITSCKVMRNERDIS 476
Query: 264 KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299
K GF+ F P AT AV+ MN + +KPL V+L+
Sbjct: 477 KGFGFVCFSTPDEATKAVTEMNNKMIGTKPLYVSLA 512
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 72/268 (26%), Positives = 120/268 (44%), Gaps = 45/268 (16%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+ +V L F G + +RV R+ S G+A + + A+
Sbjct: 176 LYVGELDHTVSEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAAD-------- 227
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
G+R P ++ + +F+KNL E +D + L F FG
Sbjct: 228 -------------------GERRDPA---LRKTGQGNIFIKNLDEAIDNKALHDTFAAFG 265
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
N++ K+ DE GKS+G+G++ + + ++AE AI +N ++ FV G +
Sbjct: 266 NVLSCKVATDETGKSRGYGYVHYETAESAEAAIKAVNRMLLNDKQVFV-------GHHIS 318
Query: 216 PKVKPPLLQPARK--NKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGF 268
K + + AR I+V NL ++I +EF +F FG ITS+ L +D + GF
Sbjct: 319 RKERQSQIDEARAQFTNIYVKNLDTDITEAEFRVMFEEFGNITSAVLQTDNEGKSRGFGF 378
Query: 269 IEFIMPKHATHAVSTMNGHVFKSKPLKV 296
+ + + A AV+ M+ K K L V
Sbjct: 379 VNYENHEEAERAVNEMHEKEIKGKVLFV 406
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 94/178 (52%), Gaps = 7/178 (3%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
++V NL+ + F++FG + + + +SRGF + + EA++A EM+
Sbjct: 336 IYVKNLDTDITEAEFRVMFEEFGNITSAVLQTDNEGKSRGFGFVNYENHEEAERAVNEMH 395
Query: 97 GHLIGSKPVIITFVELKPGQ-----RSKPVGPEEKQ--YKKDKVFVKNLVETVDEEELKS 149
I K + + + K + RS +E+Q Y ++VKNL + VD+++L++
Sbjct: 396 EKEIKGKVLFVGRAQKKSERQSELARSHEAAKQERQNKYAGVNLYVKNLDDDVDDDKLRA 455
Query: 150 HFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
F FG I K++R+E SKGFGF+ F + A KA+ EMN +MI +VSLA+
Sbjct: 456 EFEAFGTITSCKVMRNERDISKGFGFVCFSTPDEATKAVTEMNNKMIGTKPLYVSLAQ 513
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 60/100 (60%), Gaps = 2/100 (2%)
Query: 20 EGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAI 79
E A+ ++N Y L+V NL+ VD+ L EF+ FGT+ +V RN+ D S+GF
Sbjct: 424 EAAKQERQNK--YAGVNLYVKNLDDDVDDDKLRAEFEAFGTITSCKVMRNERDISKGFGF 481
Query: 80 IVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSK 119
+ F+TP EA KA EMN +IG+KP+ ++ + + +R +
Sbjct: 482 VCFSTPDEATKAVTEMNNKMIGTKPLYVSLAQRRDVRRQQ 521
>gi|409045875|gb|EKM55355.1| hypothetical protein PHACADRAFT_255926 [Phanerochaete carnosa
HHB-10118-sp]
Length = 672
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 92/311 (29%), Positives = 148/311 (47%), Gaps = 33/311 (10%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KG+ W + D R + N + + NL+ ++DN+AL + F FG +
Sbjct: 116 KGRACRIMWSQ---RDPALRKTGQGN-------IFIKNLDEAIDNKALHDTFAAFGNVLS 165
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+VA ++ S+G+ + + T A+ A +NG L+ K V + K ++SK
Sbjct: 166 CKVATDEQGRSKGYGFVHYETAEAAETAIKAVNGMLLNDKKVYVGHHISKKERQSK---L 222
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
+E + + ++VKNL V EE F +FGN+ I DE G SKGFGF+ F ++
Sbjct: 223 DEIRAQFTNIYVKNLDPEVSLEEFTQLFEQFGNVTSAVIQTDEEGNSKGFGFVNFEFHEE 282
Query: 184 AEKAI-----IEMNGRMIQHNSTFVSLAEIVPG-----KKVFPKVKPPLLQPARKNKIFV 233
A+ A+ E NGR + FVS A+ +K + K + + +++
Sbjct: 283 AQNAVDGLHDTEYNGRKL-----FVSRAQKKAEREEELRKSYEHAKMEKMSKYQGVNLYI 337
Query: 234 ANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHV 288
NL I++ F FGTITS+ ++ D K GF+ F P AT AV+ MN +
Sbjct: 338 KNLDDEIDDERLRAEFEPFGTITSAKVMRDEKGSSKGFGFVCFSSPDEATKAVAEMNNKM 397
Query: 289 FKSKPLKVTLS 299
+KPL V+L+
Sbjct: 398 IGAKPLYVSLA 408
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 77/269 (28%), Positives = 130/269 (48%), Gaps = 24/269 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+P+V L F G + +RV R+ S G+A + + A+ ++A ++
Sbjct: 51 LYVGELDPTVSEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEQL 110
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI + I + + P R G +F+KNL E +D + L F FG
Sbjct: 111 NYSLIKGRACRIMWSQRDPALRKTGQG---------NIFIKNLDEAIDNKALHDTFAAFG 161
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
N++ K+ DE G+SKG+GF+ + + +AAE AI +NG ++ +V G +
Sbjct: 162 NVLSCKVATDEQGRSKGYGFVHYETAEAAETAIKAVNGMLLNDKKVYV-------GHHIS 214
Query: 216 PKVKPPLLQPARKN--KIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGF 268
K + L R I+V NL ++ EF +LF +FG +TS+ + +D K GF
Sbjct: 215 KKERQSKLDEIRAQFTNIYVKNLDPEVSLEEFTQLFEQFGNVTSAVIQTDEEGNSKGFGF 274
Query: 269 IEFIMPKHATHAVSTMNGHVFKSKPLKVT 297
+ F + A +AV ++ + + L V+
Sbjct: 275 VNFEFHEEAQNAVDGLHDTEYNGRKLFVS 303
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 94/179 (52%), Gaps = 9/179 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
++V NL+P V + F++FG + + ++ S+GF + F EA+ A ++
Sbjct: 232 IYVKNLDPEVSLEEFTQLFEQFGNVTSAVIQTDEEGNSKGFGFVNFEFHEEAQNAVDGLH 291
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDK--------VFVKNLVETVDEEELK 148
+ + ++ + K +R + + + K +K +++KNL + +D+E L+
Sbjct: 292 DTEYNGRKLFVSRAQKK-AEREEELRKSYEHAKMEKMSKYQGVNLYIKNLDDEIDDERLR 350
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
+ F FG I K++RDE G SKGFGF+ F S A KA+ EMN +MI +VSLA+
Sbjct: 351 AEFEPFGTITSAKVMRDEKGSSKGFGFVCFSSPDEATKAVAEMNNKMIGAKPLYVSLAQ 409
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 55/88 (62%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L++ NL+ +D++ L EF+ FGT+ +V R++ S+GF + F++P EA KA
Sbjct: 330 YQGVNLYIKNLDDEIDDERLRAEFEPFGTITSAKVMRDEKGSSKGFGFVCFSSPDEATKA 389
Query: 92 RVEMNGHLIGSKPVIITFVELKPGQRSK 119
EMN +IG+KP+ ++ + + +R +
Sbjct: 390 VAEMNNKMIGAKPLYVSLAQRREVRRQQ 417
>gi|268566587|ref|XP_002639761.1| C. briggsae CBR-PAB-1 protein [Caenorhabditis briggsae]
Length = 651
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 77/246 (31%), Positives = 123/246 (50%), Gaps = 25/246 (10%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVAR-NKNDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V+ L +F G + +RV R N S G+A + F PA+A++
Sbjct: 29 YTMASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAER 88
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN + KP+ I + + P R G +F+KNL + +D + +
Sbjct: 89 AMDTMNFEALHGKPMRIMWSQRDPAMRRSGAG---------NIFIKNLDKVIDNKSIYDT 139
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVP 210
F FGNI+ K+ DE G SKG+GF+ F + +AA+ AI ++NG ++ FV
Sbjct: 140 FSLFGNILSCKVAIDEEGSSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVG------ 193
Query: 211 GKKVFPKVK--PPLLQPARK-NKIFVANLPSNINNSEFEELFARFGTITSSSLVS----D 263
K P+ + L + A+K ++V N + N E+LFA++GTITS +++
Sbjct: 194 --KFQPRAQRNRELGETAKKFTNVYVKNFGEHYNKDTLEKLFAKYGTITSCDVMTSEGKS 251
Query: 264 KHIGFI 269
K GF+
Sbjct: 252 KGFGFV 257
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 89/313 (28%), Positives = 156/313 (49%), Gaps = 32/313 (10%)
Query: 5 GKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDV 64
GK + W + D R + N + + NL+ +DN+++ + F FG +
Sbjct: 100 GKPMRIMWSQ---RDPAMRRSGAGN-------IFIKNLDKVIDNKSIYDTFSLFGNILSC 149
Query: 65 RVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPE 124
+VA ++ S+G+ + F T A+ A ++NG L+ K V + + + QR++ +G
Sbjct: 150 KVAIDEEGSSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPR-AQRNRELGET 208
Query: 125 EKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAA 184
K++ V+VKN E +++ L+ F K+G I ++ E GKSKGFGF+ F + A
Sbjct: 209 AKKFTN--VYVKNFGEHYNKDTLEKLFAKYGTITSCDVMTSE-GKSKGFGFVAFAEPEEA 265
Query: 185 EKAIIEMNGRMIQHNSTFVSL----------AEIVPGKKVFPKVKPPLLQPARKNKIFVA 234
E A+ +N ++ + + + AE+ KK + K +Q + ++V
Sbjct: 266 EAAVQALNDSPVEGSDLKLHVCRAQKKSERHAEL---KKKHEQHKVERMQKYQGVNLYVK 322
Query: 235 NLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVF 289
NL ++++ ++ F FG ITS+ +++D K GF+ F P+ AT AVS MN +
Sbjct: 323 NLDESVDDEALKKQFESFGNITSAKVMTDENGRSKGFGFVCFEKPEEATTAVSEMNSKMV 382
Query: 290 KSKPLKVTLSGTK 302
SKPL V L+ K
Sbjct: 383 CSKPLYVALAQRK 395
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 54/93 (58%)
Query: 27 ENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPA 86
E + Y+ L+V NL+ SVD++AL +F+ FG + +V ++N S+GF + F P
Sbjct: 309 ERMQKYQGVNLYVKNLDESVDDEALKKQFESFGNITSAKVMTDENGRSKGFGFVCFEKPE 368
Query: 87 EAKKARVEMNGHLIGSKPVIITFVELKPGQRSK 119
EA A EMN ++ SKP+ + + K +R++
Sbjct: 369 EATTAVSEMNSKMVCSKPLYVALAQRKEDRRAQ 401
>gi|307095208|gb|ADN29910.1| poly A binding protein cytoplasmic 1 isoform 1-like protein
[Triatoma matogrossensis]
Length = 341
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 81/273 (29%), Positives = 138/273 (50%), Gaps = 23/273 (8%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L V L +F G + +RV ++ S G+A + F PA+A++
Sbjct: 10 YPMASLYVGDLHSDVTKAMLFEKFSSAGPVLSIRVCKDMITRRSLGYAYVNFQQPADAER 69
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN + +P+ I + + P R VG VF+KNL + +D + +
Sbjct: 70 ALDTMNFDTLKGRPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKNIDNKAMYDT 120
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVP 210
F FGNI+ K+ +DE+G SKG+GF+ F + +AA K+I ++NG ++ FV + +P
Sbjct: 121 FSAFGNILSCKVAQDESGSSKGYGFVHFETEEAATKSIDKVNGMLLNGKKVFV--GKFIP 178
Query: 211 GKKVFPKVKPPLLQPARK-NKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKH---- 265
K + + L + A+ ++V N + + +E+F ++G ITS ++V +K
Sbjct: 179 RK----EREKELGEKAKLFTNVYVKNFGEDFTDDMLKEMFEKYGPITSHTVVVNKDQKSR 234
Query: 266 -IGFIEFIMPKHATHAVSTMNG-HVFKSKPLKV 296
GF+ F P+ A AV +NG + + K L V
Sbjct: 235 GFGFVAFEDPEAAERAVEDLNGKEIIEGKQLYV 267
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 71/232 (30%), Positives = 131/232 (56%), Gaps = 11/232 (4%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ ++DN+A+ + F FG + +VA++++ S+G+ + F T A K+ ++N
Sbjct: 103 VFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGSSKGYGFVHFETEEAATKSIDKVN 162
Query: 97 GHLIGSKPVII-TFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
G L+ K V + F+ K +R K +G + K + V+VKN E ++ LK F K+G
Sbjct: 163 GMLLNGKKVFVGKFIPRK--EREKELGEKAKLFTN--VYVKNFGEDFTDDMLKEMFEKYG 218
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGR-MIQHNSTFVSLAEIVPGKKV 214
I +V +++ KS+GFGF+ F +AAE+A+ ++NG+ +I+ +V A+ ++
Sbjct: 219 PITSHTVVVNKDQKSRGFGFVAFEDPEAAERAVEDLNGKEIIEGKQLYVGRAQKKAERQQ 278
Query: 215 FPKVKPPLLQPARKNK-----IFVANLPSNINNSEFEELFARFGTITSSSLV 261
K K L+ R N+ ++V NL I++ + F+ FGTITS+ ++
Sbjct: 279 ELKRKFEQLKMERMNRYQGVNLYVKNLDDTIDDERLRKEFSPFGTITSAKVM 330
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 79/148 (53%), Gaps = 11/148 (7%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
++V N + L F+K+G + V NK+ +SRGF + F P A++A ++N
Sbjct: 196 VYVKNFGEDFTDDMLKEMFEKYGPITSHTVVVNKDQKSRGFGFVAFEDPEAAERAVEDLN 255
Query: 97 G-HLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDK--------VFVKNLVETVDEEEL 147
G +I K + + + K +R + + + +Q K ++ ++VKNL +T+D+E L
Sbjct: 256 GKEIIEGKQLYVGRAQ-KKAERQQELKRKFEQLKMERMNRYQGVNLYVKNLDDTIDDERL 314
Query: 148 KSHFIKFGNIIEVKIVRDENGKSKGFGF 175
+ F FG I K++ +E +SKGFGF
Sbjct: 315 RKEFSPFGTITSAKVMLEER-RSKGFGF 341
>gi|222635819|gb|EEE65951.1| hypothetical protein OsJ_21832 [Oryza sativa Japonica Group]
Length = 710
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 78/279 (27%), Positives = 136/279 (48%), Gaps = 25/279 (8%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NLEP++DN++L F FGT+ +VA + N +S+G+ I F + + AK A +NG
Sbjct: 177 IKNLEPNIDNKSLYEMFSSFGTILSSKVATDFNGKSKGYGFIQFESESSAKDAINGLNGM 236
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKD-----KVFVKNLVETVDEEELKSHFIK 153
L + + + + +E+++ D V+VKNL + + +L + F
Sbjct: 237 LANGQKIFVGLF----------IRRQEREHTGDANNFTNVYVKNLPKHFSDNDLLNEFSS 286
Query: 154 FGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKK 213
FG I ++RD NG S+ FGF+ F + A A+ +NG+ I +V+ A+ ++
Sbjct: 287 FGAITSAIVMRDANGLSRCFGFVNFEKSECARNAVKNLNGKSIGDMVLYVARAQKKSERQ 346
Query: 214 V-----FPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKH--- 265
F K + + +++ NL +IN+ +LF FG + S ++ D H
Sbjct: 347 AELKAKFEHDKNQKFEKLQTVNLYLKNLDDDINDEHLRKLFECFGEVASCKVMLDSHGRS 406
Query: 266 --IGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ F + A +A+ MNG + KPL V ++ K
Sbjct: 407 KGCGFVSFATVEDANNAILKMNGKMVGKKPLYVAVAQRK 445
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 73/257 (28%), Positives = 120/257 (46%), Gaps = 23/257 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARN--KNDESRGFAIIVFNTPAEAKKARVE 94
L+V +LE SV L+ F + + V R+ +S G+ + F + +A +A
Sbjct: 86 LYVGDLEASVGEDQLVALFSQVAPVASAYVCRDIAGGRKSLGYGYVNFMSREDATRAMEN 145
Query: 95 MNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKF 154
+N ++ KP+ + F P R + VF+KNL +D + L F F
Sbjct: 146 LNFTVVNGKPIRVMFSNRDPTLRKSGLA---------NVFIKNLEPNIDNKSLYEMFSSF 196
Query: 155 GNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKV 214
G I+ K+ D NGKSKG+GFIQF S +A+ AI +NG + FV L +
Sbjct: 197 GTILSSKVATDFNGKSKGYGFIQFESESSAKDAINGLNGMLANGQKIFVGLF-------I 249
Query: 215 FPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFI 269
+ + ++V NLP + ++++ F+ FG ITS+ ++ D + GF+
Sbjct: 250 RRQEREHTGDANNFTNVYVKNLPKHFSDNDLLNEFSSFGAITSAIVMRDANGLSRCFGFV 309
Query: 270 EFIMPKHATHAVSTMNG 286
F + A +AV +NG
Sbjct: 310 NFEKSECARNAVKNLNG 326
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 97/186 (52%), Gaps = 7/186 (3%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
++V NL + L+NEF FG + V R+ N SR F + F A+ A +N
Sbjct: 266 VYVKNLPKHFSDNDLLNEFSSFGAITSAIVMRDANGLSRCFGFVNFEKSECARNAVKNLN 325
Query: 97 GHLIGSKPVIITFVELKPGQRS--KPVGPEEKQYKKDKV-----FVKNLVETVDEEELKS 149
G IG + + + K +++ K +K K +K+ ++KNL + +++E L+
Sbjct: 326 GKSIGDMVLYVARAQKKSERQAELKAKFEHDKNQKFEKLQTVNLYLKNLDDDINDEHLRK 385
Query: 150 HFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIV 209
F FG + K++ D +G+SKG GF+ F + + A AI++MNG+M+ +V++A+
Sbjct: 386 LFECFGEVASCKVMLDSHGRSKGCGFVSFATVEDANNAILKMNGKMVGKKPLYVAVAQRK 445
Query: 210 PGKKVF 215
+K F
Sbjct: 446 EERKAF 451
>gi|71993209|ref|NP_001021710.1| Protein PAB-1, isoform b [Caenorhabditis elegans]
gi|38422742|emb|CAE54916.1| Protein PAB-1, isoform b [Caenorhabditis elegans]
Length = 583
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 88/315 (27%), Positives = 157/315 (49%), Gaps = 46/315 (14%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ +DN+++ + F FG + +VA +++ S+G+ + F T A+ A ++N
Sbjct: 59 IFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQKVN 118
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G L+ K V + + + QR++ +G KQ+ V+VKN + ++E L+ F KFGN
Sbjct: 119 GMLLAGKKVFVGKFQPR-AQRNRELGETAKQF--TNVYVKNFGDHYNKETLEKLFAKFGN 175
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----------A 206
I +++ E GKSKGFGF+ F + + AE A+ ++ I+ + + A
Sbjct: 176 ITSCEVMTVE-GKSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHVCRAQKKSERHA 234
Query: 207 EIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD--- 263
E+ KK + K +Q + ++V NL +++ ++ F +G ITS+ +++D
Sbjct: 235 EL---KKKHEQHKAERMQKYQGVNLYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENG 291
Query: 264 --KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLS---------------------- 299
K GF+ F P+ AT AV+ MN + SKPL V ++
Sbjct: 292 RSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYVAIAQRKEDRRAQLASQYMQRLASMR 351
Query: 300 --GTKPGVSITNPTK 312
G PG ++ NPT+
Sbjct: 352 MHGNVPGAAMYNPTQ 366
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 105/223 (47%), Gaps = 34/223 (15%)
Query: 89 KKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELK 148
++A MN + KP+ I + + P R G +F+KNL + +D + +
Sbjct: 24 ERAMDTMNFEALHGKPMRIMWSQRDPAMRRSGAG---------NIFIKNLDKVIDNKSIY 74
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEI 208
F FGNI+ K+ DE+G SKG+GF+ F + +AA+ AI ++NG ++
Sbjct: 75 DTFSLFGNILSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQKVNGMLL------------ 122
Query: 209 VPGKKVFPKVKPPLLQPARK--------NKIFVANLPSNINNSEFEELFARFGTITSSSL 260
GKKVF P Q R+ ++V N + N E+LFA+FG ITS +
Sbjct: 123 -AGKKVFVGKFQPRAQRNRELGETAKQFTNVYVKNFGDHYNKETLEKLFAKFGNITSCEV 181
Query: 261 VS----DKHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299
++ K GF+ F P+ A AV ++ + LK+ +
Sbjct: 182 MTVEGKSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHVC 224
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 101/196 (51%), Gaps = 11/196 (5%)
Query: 22 ARSNKENNKVYKE-NELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAII 80
A+ N+E + K+ ++V N + + L F KFG + V +S+GF +
Sbjct: 136 AQRNRELGETAKQFTNVYVKNFGDHYNKETLEKLFAKFGNITSCEVM-TVEGKSKGFGFV 194
Query: 81 VFNTPAEAKKARVEMNGHLI-GSKPVIITFVELKPGQRSKPVGPEEKQYKKDK------- 132
F P EA+ A ++ I G+ + K +R + + +Q+K ++
Sbjct: 195 AFANPEEAETAVQALHDSTIEGTDLKLHVCRAQKKSERHAELKKKHEQHKAERMQKYQGV 254
Query: 133 -VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEM 191
++VKNL ETVD++ LK F +GNI K++ DENG+SKGFGF+ F + A A+ EM
Sbjct: 255 NLYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEATSAVTEM 314
Query: 192 NGRMIQHNSTFVSLAE 207
N +M+ +V++A+
Sbjct: 315 NSKMVCSKPLYVAIAQ 330
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 52/93 (55%)
Query: 27 ENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPA 86
E + Y+ L+V NL+ +VD+ L +F+ +G + +V ++N S+GF + F P
Sbjct: 246 ERMQKYQGVNLYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPE 305
Query: 87 EAKKARVEMNGHLIGSKPVIITFVELKPGQRSK 119
EA A EMN ++ SKP+ + + K +R++
Sbjct: 306 EATSAVTEMNSKMVCSKPLYVAIAQRKEDRRAQ 338
>gi|90399074|emb|CAJ86296.1| H0124B04.13 [Oryza sativa Indica Group]
Length = 913
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 83/283 (29%), Positives = 141/283 (49%), Gaps = 13/283 (4%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V NL SV + LI F FG + RV + S+G+ + ++ P A +A M
Sbjct: 211 LYVGNLPASVGSHKLIELFLPFGQIVRSRVVDDCFTGLSQGYGFVKYSDPRCASEAIKRM 270
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
NG L+ + + + P P K+ K++V NL +++ + L F+ FG
Sbjct: 271 NGRLVEGRALEVRVAGF-PSSEDNSQQPS-KETDMAKLYVCNLSLSMNTDRLIHLFLPFG 328
Query: 156 NIIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEI---VPG 211
+ K+ +D G SKG+GF+Q+ S A +A+I +NGR++ V ++ I +P
Sbjct: 329 EVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIHLNGRLVDGRKIEVRVSGIPSTLPN 388
Query: 212 KKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KH 265
V ++ + ++V N+PS+I+ + ELF FG IT + +V+D K
Sbjct: 389 SAVESPSTTRTVKEIDMSNLYVCNMPSSIDTKKLVELFLPFGKITHARVVADPDTFSAKG 448
Query: 266 IGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKPGVSIT 308
GFI+F + AT A++ MNG + + + V ++G P SI+
Sbjct: 449 YGFIKFTDSESATKAIAAMNGALVGGEMIIVRVAGLSPSASIS 491
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 61/265 (23%), Positives = 120/265 (45%), Gaps = 11/265 (4%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKND-ESRGFAIIVFNTPAEAKKARVEM 95
L+V N+ S+D + L+ F FG + RV + + ++G+ I F A KA M
Sbjct: 408 LYVCNMPSSIDTKKLVELFLPFGKITHARVVADPDTFSAKGYGFIKFTDSESATKAIAAM 467
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
NG L+G + +I+ L P V + K ++++ NL ++ +++ + F FG
Sbjct: 468 NGALVGGEMIIVRVAGLSPSASISAV-QTTQDINKSRLYITNLPRSMTADKMVNLFAPFG 526
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
I +V + + + + + +A KA+ M+G M++ V +E+
Sbjct: 527 QITKVLMNLE-------YSLVWYADAPSAIKAVQHMDGYMVEGKRLVVKRSELCTTNASQ 579
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKHIGFIEFIMPK 275
KP ++ ++V +PS++ +F +LF FG + + + + G + F P
Sbjct: 580 AGGKP--IKEIDMANLYVGRVPSSLTEDQFIDLFRPFGRVVQARMFRFQRYGMVRFDNPS 637
Query: 276 HATHAVSTMNGHVFKSKPLKVTLSG 300
A A+ ++G+ L V ++G
Sbjct: 638 CAAAAIDHLDGYQIGGSILAVRVAG 662
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 70/314 (22%), Positives = 138/314 (43%), Gaps = 29/314 (9%)
Query: 34 ENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARV 93
++ L++ NL S+ ++N F FG + V + N E ++++ + A KA
Sbjct: 501 KSRLYITNLPRSMTADKMVNLFAPFGQITKVLM----NLE---YSLVWYADAPSAIKAVQ 553
Query: 94 EMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIK 153
M+G+++ K +++ EL S+ G K+ ++V + ++ E++ F
Sbjct: 554 HMDGYMVEGKRLVVKRSELCTTNASQAGGKPIKEIDMANLYVGRVPSSLTEDQFIDLFRP 613
Query: 154 FGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKK 213
FG +++ ++ R + +G ++F + A AI ++G I + V +A + P +
Sbjct: 614 FGRVVQARMFRFQR-----YGMVRFDNPSCAAAAIDHLDGYQIGGSILAVRVAGL-PAES 667
Query: 214 VFPKVKPPLLQPARKNK--------IFVANLPSNINNSEFEELFARFGTITSSSLVSDKH 265
K L N+ ++V++LPS +NN +LF G IT + +V +++
Sbjct: 668 --NAAKGALTSQMSSNEQGQIDMTNLYVSHLPSYVNNERLIDLFLPCGQITQAKVVVERY 725
Query: 266 ------IGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKPGVSITNPTKAPKKPAY 319
GF++F A A++ MNG+ L+V ++G P +
Sbjct: 726 TGVSKGFGFVKFADAYSAAVALTHMNGYPLDGHVLEVRIAGVHPDAMSSYMAHFYSHFTM 785
Query: 320 IDEVKNVIGIKVQY 333
D K +GI Y
Sbjct: 786 HDPAKAAVGIPTSY 799
>gi|125555900|gb|EAZ01506.1| hypothetical protein OsI_23538 [Oryza sativa Indica Group]
Length = 669
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 78/279 (27%), Positives = 136/279 (48%), Gaps = 25/279 (8%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NLEP++DN++L F FGT+ +VA + N +S+G+ I F + + AK A +NG
Sbjct: 154 IKNLEPNIDNKSLYEMFSSFGTILSSKVATDFNGKSKGYGFIQFESESSAKDAINGLNGM 213
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKD-----KVFVKNLVETVDEEELKSHFIK 153
L + + + + +E+++ D V+VKNL + + +L + F
Sbjct: 214 LANGQKIFVGLF----------IRRQEREHTGDANNFTNVYVKNLPKHFSDNDLLNEFSS 263
Query: 154 FGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKK 213
FG I ++RD NG S+ FGF+ F + A A+ +NG+ I +V+ A+ ++
Sbjct: 264 FGAITSAIVMRDANGLSRCFGFVNFEKSECARNAVKNLNGKSIGDMVLYVARAQKKSERQ 323
Query: 214 V-----FPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKH--- 265
F K + + +++ NL +IN+ +LF FG + S ++ D H
Sbjct: 324 AELKAKFEHDKNQKFEKLQTVNLYLKNLDDDINDEHLRKLFECFGEVASCKVMLDSHGRS 383
Query: 266 --IGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ F + A +A+ MNG + KPL V ++ K
Sbjct: 384 KGCGFVSFATVEDANNAILKMNGKMVGKKPLYVAVAQRK 422
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 73/257 (28%), Positives = 120/257 (46%), Gaps = 23/257 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARN--KNDESRGFAIIVFNTPAEAKKARVE 94
L+V +LE SV L+ F + + V R+ +S G+ + F + +A +A
Sbjct: 63 LYVGDLEASVGEDQLVALFSQVAPVASAYVCRDIAGGSKSLGYGYVNFMSREDATRAMEN 122
Query: 95 MNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKF 154
+N ++ KP+ + F P R + VF+KNL +D + L F F
Sbjct: 123 LNFTVVNGKPIRVMFSNRDPTLRKSGLA---------NVFIKNLEPNIDNKSLYEMFSSF 173
Query: 155 GNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKV 214
G I+ K+ D NGKSKG+GFIQF S +A+ AI +NG + FV L +
Sbjct: 174 GTILSSKVATDFNGKSKGYGFIQFESESSAKDAINGLNGMLANGQKIFVGLF-------I 226
Query: 215 FPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFI 269
+ + ++V NLP + ++++ F+ FG ITS+ ++ D + GF+
Sbjct: 227 RRQEREHTGDANNFTNVYVKNLPKHFSDNDLLNEFSSFGAITSAIVMRDANGLSRCFGFV 286
Query: 270 EFIMPKHATHAVSTMNG 286
F + A +AV +NG
Sbjct: 287 NFEKSECARNAVKNLNG 303
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 97/186 (52%), Gaps = 7/186 (3%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
++V NL + L+NEF FG + V R+ N SR F + F A+ A +N
Sbjct: 243 VYVKNLPKHFSDNDLLNEFSSFGAITSAIVMRDANGLSRCFGFVNFEKSECARNAVKNLN 302
Query: 97 GHLIGSKPVIITFVELKPGQRS--KPVGPEEKQYKKDKV-----FVKNLVETVDEEELKS 149
G IG + + + K +++ K +K K +K+ ++KNL + +++E L+
Sbjct: 303 GKSIGDMVLYVARAQKKSERQAELKAKFEHDKNQKFEKLQTVNLYLKNLDDDINDEHLRK 362
Query: 150 HFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIV 209
F FG + K++ D +G+SKG GF+ F + + A AI++MNG+M+ +V++A+
Sbjct: 363 LFECFGEVASCKVMLDSHGRSKGCGFVSFATVEDANNAILKMNGKMVGKKPLYVAVAQRK 422
Query: 210 PGKKVF 215
+K F
Sbjct: 423 EERKAF 428
>gi|50725435|dbj|BAD32907.1| putative polyadenylate-binding protein [Oryza sativa Japonica
Group]
Length = 670
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 78/279 (27%), Positives = 136/279 (48%), Gaps = 25/279 (8%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NLEP++DN++L F FGT+ +VA + N +S+G+ I F + + AK A +NG
Sbjct: 153 IKNLEPNIDNKSLYEMFSSFGTILSSKVATDFNGKSKGYGFIQFESESSAKDAINGLNGM 212
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKD-----KVFVKNLVETVDEEELKSHFIK 153
L + + + + +E+++ D V+VKNL + + +L + F
Sbjct: 213 LANGQKIFVGLF----------IRRQEREHTGDANNFTNVYVKNLPKHFSDNDLLNEFSS 262
Query: 154 FGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKK 213
FG I ++RD NG S+ FGF+ F + A A+ +NG+ I +V+ A+ ++
Sbjct: 263 FGAITSAIVMRDANGLSRCFGFVNFEKSECARNAVKNLNGKSIGDMVLYVARAQKKSERQ 322
Query: 214 V-----FPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKH--- 265
F K + + +++ NL +IN+ +LF FG + S ++ D H
Sbjct: 323 AELKAKFEHDKNQKFEKLQTVNLYLKNLDDDINDEHLRKLFECFGEVASCKVMLDSHGRS 382
Query: 266 --IGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ F + A +A+ MNG + KPL V ++ K
Sbjct: 383 KGCGFVSFATVEDANNAILKMNGKMVGKKPLYVAVAQRK 421
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 73/257 (28%), Positives = 120/257 (46%), Gaps = 23/257 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARN--KNDESRGFAIIVFNTPAEAKKARVE 94
L+V +LE SV L+ F + + V R+ +S G+ + F + +A +A
Sbjct: 62 LYVGDLEASVGEDQLVALFSQVAPVASAYVCRDIAGGRKSLGYGYVNFMSREDATRAMEN 121
Query: 95 MNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKF 154
+N ++ KP+ + F P R + VF+KNL +D + L F F
Sbjct: 122 LNFTVVNGKPIRVMFSNRDPTLRKSGLA---------NVFIKNLEPNIDNKSLYEMFSSF 172
Query: 155 GNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKV 214
G I+ K+ D NGKSKG+GFIQF S +A+ AI +NG + FV L +
Sbjct: 173 GTILSSKVATDFNGKSKGYGFIQFESESSAKDAINGLNGMLANGQKIFVGLF-------I 225
Query: 215 FPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFI 269
+ + ++V NLP + ++++ F+ FG ITS+ ++ D + GF+
Sbjct: 226 RRQEREHTGDANNFTNVYVKNLPKHFSDNDLLNEFSSFGAITSAIVMRDANGLSRCFGFV 285
Query: 270 EFIMPKHATHAVSTMNG 286
F + A +AV +NG
Sbjct: 286 NFEKSECARNAVKNLNG 302
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 97/186 (52%), Gaps = 7/186 (3%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
++V NL + L+NEF FG + V R+ N SR F + F A+ A +N
Sbjct: 242 VYVKNLPKHFSDNDLLNEFSSFGAITSAIVMRDANGLSRCFGFVNFEKSECARNAVKNLN 301
Query: 97 GHLIGSKPVIITFVELKPGQRS--KPVGPEEKQYKKDKV-----FVKNLVETVDEEELKS 149
G IG + + + K +++ K +K K +K+ ++KNL + +++E L+
Sbjct: 302 GKSIGDMVLYVARAQKKSERQAELKAKFEHDKNQKFEKLQTVNLYLKNLDDDINDEHLRK 361
Query: 150 HFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIV 209
F FG + K++ D +G+SKG GF+ F + + A AI++MNG+M+ +V++A+
Sbjct: 362 LFECFGEVASCKVMLDSHGRSKGCGFVSFATVEDANNAILKMNGKMVGKKPLYVAVAQRK 421
Query: 210 PGKKVF 215
+K F
Sbjct: 422 EERKAF 427
>gi|413956150|gb|AFW88799.1| hypothetical protein ZEAMMB73_294352 [Zea mays]
Length = 735
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 79/271 (29%), Positives = 143/271 (52%), Gaps = 18/271 (6%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
V NL SVDN +L F KFG + +VA+N++ SRG+ + F + A +A +NG
Sbjct: 213 VKNLSSSVDNASLQELFSKFGDVLSCKVAKNEDGTSRGYGFVQFTSQESADEAIGNLNGS 272
Query: 99 LIGSKPV-IITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNI 157
L + + + TF+ K +RS K +++K+L + + EE +K F +FG+I
Sbjct: 273 LFNDRKLHVATFI--KKSERSA-----NNDDKFTNLYMKHLDDDITEELVKLKFSQFGSI 325
Query: 158 IEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPK 217
+ VKI++ +G S GFGF+ F + ++A KA MNG ++ + +V+ A+ +K + +
Sbjct: 326 VSVKIMKRPDGSSLGFGFVSFQNPESAIKAQSTMNGMLLGSKALYVARAQKKEERKQYLQ 385
Query: 218 V-----KPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIG 267
+ ++ ++ +++ N+ +++ F FG ITS+ ++ D + G
Sbjct: 386 RLHEEKRNEIMTRCNESNVYIKNIHDEVDDDALRARFVEFGNITSAKVMRDDKGISRGFG 445
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKVTL 298
F+ + P+ A AV+ M G +F KPL V +
Sbjct: 446 FVCYSTPEEAKSAVNNMRGVMFFGKPLYVAI 476
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 83/275 (30%), Positives = 134/275 (48%), Gaps = 39/275 (14%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVAR-NKNDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L V + L F K GT+ VRV R N S + + + + A+A A ++
Sbjct: 123 LYVGDLHEDVAEEHLFEAFSKIGTVTSVRVCRDNATSRSLRYGYVNYFSRADAVVALDKL 182
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N L+ KP+ + + P R VG +FVKNL +VD L+ F KFG
Sbjct: 183 NHSLVLDKPIRVMWSNRDPDARRSGVG---------NIFVKNLSSSVDNASLQELFSKFG 233
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQ----HNSTFVSLAEIVPG 211
+++ K+ ++E+G S+G+GF+QF S ++A++AI +NG + H +TF+ +E
Sbjct: 234 DVLSCKVAKNEDGTSRGYGFVQFTSQESADEAIGNLNGSLFNDRKLHVATFIKKSE---- 289
Query: 212 KKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEEL----FARFGTITSSSLV-----S 262
+ A + F ++++ EEL F++FG+I S ++ S
Sbjct: 290 ------------RSANNDDKFTNLYMKHLDDDITEELVKLKFSQFGSIVSVKIMKRPDGS 337
Query: 263 DKHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVT 297
GF+ F P+ A A STMNG + SK L V
Sbjct: 338 SLGFGFVSFQNPESAIKAQSTMNGMLLGSKALYVA 372
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 102/199 (51%), Gaps = 25/199 (12%)
Query: 23 RSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVF 82
+S + N K L++ +L+ + + + +F +FG++ V++ + + S GF + F
Sbjct: 287 KSERSANNDDKFTNLYMKHLDDDITEELVKLKFSQFGSIVSVKIMKRPDGSSLGFGFVSF 346
Query: 83 NTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQY-------------- 128
P A KA+ MNG L+GSK + + + K E KQY
Sbjct: 347 QNPESAIKAQSTMNGMLLGSKALYVARAQKKE---------ERKQYLQRLHEEKRNEIMT 397
Query: 129 --KKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEK 186
+ V++KN+ + VD++ L++ F++FGNI K++RD+ G S+GFGF+ + + + A+
Sbjct: 398 RCNESNVYIKNIHDEVDDDALRARFVEFGNITSAKVMRDDKGISRGFGFVCYSTPEEAKS 457
Query: 187 AIIEMNGRMIQHNSTFVSL 205
A+ M G M +V++
Sbjct: 458 AVNNMRGVMFFGKPLYVAI 476
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 47/86 (54%)
Query: 34 ENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARV 93
E+ +++ N+ VD+ AL F +FG + +V R+ SRGF + ++TP EAK A
Sbjct: 401 ESNVYIKNIHDEVDDDALRARFVEFGNITSAKVMRDDKGISRGFGFVCYSTPEEAKSAVN 460
Query: 94 EMNGHLIGSKPVIITFVELKPGQRSK 119
M G + KP+ + + K +++K
Sbjct: 461 NMRGVMFFGKPLYVAIFQRKEERKAK 486
>gi|297827151|ref|XP_002881458.1| PAB7 binding protein 7 [Arabidopsis lyrata subsp. lyrata]
gi|297327297|gb|EFH57717.1| PAB7 binding protein 7 [Arabidopsis lyrata subsp. lyrata]
Length = 609
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 89/308 (28%), Positives = 142/308 (46%), Gaps = 27/308 (8%)
Query: 5 GKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDV 64
GK++ W D AR N N + V NL S+ N L + FKKFG +
Sbjct: 92 GKMIRVMWSVREPD---ARRNGVGN-------VFVKNLPESITNAVLQDMFKKFGNIVSC 141
Query: 65 RVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPE 124
+VA ++ +SRG+ + F A A ++N + K + + G+ K
Sbjct: 142 KVATFEDGKSRGYGFVQFEQEDAAHAAIEKLNSTTVAGKEIYV-------GKFMKKTDRA 194
Query: 125 EKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAA 184
+ + K V++KNL V+E+ L+ F +FG I+ + I +DENG KG+ F+ F + A
Sbjct: 195 KAEEKYTNVYMKNLDADVNEDLLREKFSEFGKIVSLAIAKDENGLCKGYAFVNFDKPEDA 254
Query: 185 EKAIIEMNGRMIQHNSTFVSLAEIVPG-----KKVFPKVKPPLLQPARKNKIFVANLPSN 239
A MNG +V A+ ++ F + + A+ + I+V N+
Sbjct: 255 RWAAETMNGTRFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQMMKAKVSNIYVKNINVG 314
Query: 240 INNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
+ E + F++ GTITS+ L+ D K GF+ F P+ A AV T +G +F KPL
Sbjct: 315 VTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTFHGKMFHGKPL 374
Query: 295 KVTLSGTK 302
V + K
Sbjct: 375 YVATAQKK 382
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 86/266 (32%), Positives = 128/266 (48%), Gaps = 24/266 (9%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKND-ESRGFAIIVFNTPAEAKKARVEM 95
L+V +L PSV L + F +F +L VR+ ++ + S + F + +A A +
Sbjct: 26 LYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASTGRSLCYGYANFLSRQDANLAIEKK 85
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N L+ K + + + +P R VG VFVKNL E++ L+ F KFG
Sbjct: 86 NHSLLNGKMIRVMWSVREPDARRNGVG---------NVFVKNLPESITNAVLQDMFKKFG 136
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ E+GKS+G+GF+QF AA AI ++ NST V+ EI GK F
Sbjct: 137 NIVSCKVATFEDGKSRGYGFVQFEQEDAAHAAIEKL-------NSTTVAGKEIYVGK--F 187
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIE 270
K + +++ NL +++N E F+ FG I S ++ D K F+
Sbjct: 188 MKKTDRAKAEEKYTNVYMKNLDADVNEDLLREKFSEFGKIVSLAIAKDENGLCKGYAFVN 247
Query: 271 FIMPKHATHAVSTMNGHVFKSKPLKV 296
F P+ A A TMNG F SK L V
Sbjct: 248 FDKPEDARWAAETMNGTRFGSKCLYV 273
>gi|451798952|gb|AGF69179.1| polyadenylate-binding protein 2-like protein, partial [Triticum
aestivum]
Length = 497
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 79/276 (28%), Positives = 134/276 (48%), Gaps = 15/276 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ ++DN+ L + F FG + +VA + +S+GF + + A+ A +N
Sbjct: 13 IFIKNLDKTIDNKTLHDTFSAFGAILSCKVAMDDIGQSKGFGFVQYEKEESAQSAMKSLN 72
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G LI KPV + P R + + K + VFVKNL E+ +++L F +G
Sbjct: 73 GMLINDKPVYVG-----PFLRKQERDNSFDKAKFNNVFVKNLSESTTKDDLVKVFSGYGT 127
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEI-----VPG 211
I ++ +GKS+ F F+ F S A +A+ E+NG+ I +V A+ +
Sbjct: 128 ITSAVVMIGMDGKSRCFDFVNFESPDDAARAVEELNGKKINDKEWYVGRAQKKSEREMDL 187
Query: 212 KKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHI 266
K+ F + + +++ NL I + + ELF+ FG ITS ++ D K
Sbjct: 188 KRRFEQSMKDAADKYQGQNLYLKNLDDGITDDQLRELFSNFGKITSCKIMRDQNGVSKGS 247
Query: 267 GFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ F + A+ A++ MNG + KPL V + K
Sbjct: 248 GFVSFSTREEASQALTEMNGKMISGKPLYVAFAQRK 283
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 102/212 (48%), Gaps = 7/212 (3%)
Query: 33 KENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKAR 92
K N + V NL S L+ F +GT+ V + +SR F + F +P +A +A
Sbjct: 100 KFNNVFVKNLSESTTKDDLVKVFSGYGTITSAVVMIGMDGKSRCFDFVNFESPDDAARAV 159
Query: 93 VEMNGHLIGSKPVIITFVELKPGQR-------SKPVGPEEKQYKKDKVFVKNLVETVDEE 145
E+NG I K + + K + + + +Y+ +++KNL + + ++
Sbjct: 160 EELNGKKINDKEWYVGRAQKKSEREMDLKRRFEQSMKDAADKYQGQNLYLKNLDDGITDD 219
Query: 146 ELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL 205
+L+ F FG I KI+RD+NG SKG GF+ F + + A +A+ EMNG+MI +V+
Sbjct: 220 QLRELFSNFGKITSCKIMRDQNGVSKGSGFVSFSTREEASQALTEMNGKMISGKPLYVAF 279
Query: 206 AEIVPGKKVFPKVKPPLLQPARKNKIFVANLP 237
A+ +K + + ++P LP
Sbjct: 280 AQRKEDRKAMLQAQFSQMRPVPMTPSMTPRLP 311
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 86/169 (50%), Gaps = 12/169 (7%)
Query: 123 PEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYK 182
P ++ +F+KNL +T+D + L F FG I+ K+ D+ G+SKGFGF+Q+ +
Sbjct: 3 PSSRRSGSANIFIKNLDKTIDNKTLHDTFSAFGAILSCKVAMDDIGQSKGFGFVQYEKEE 62
Query: 183 AAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINN 242
+A+ A+ +NG +I +V G + + + A+ N +FV NL +
Sbjct: 63 SAQSAMKSLNGMLINDKPVYV-------GPFLRKQERDNSFDKAKFNNVFVKNLSESTTK 115
Query: 243 SEFEELFARFGTITSSSLV-----SDKHIGFIEFIMPKHATHAVSTMNG 286
+ ++F+ +GTITS+ ++ + F+ F P A AV +NG
Sbjct: 116 DDLVKVFSGYGTITSAVVMIGMDGKSRCFDFVNFESPDDAARAVEELNG 164
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 49/91 (53%)
Query: 23 RSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVF 82
+S K+ Y+ L++ NL+ + + L F FG + ++ R++N S+G + F
Sbjct: 193 QSMKDAADKYQGQNLYLKNLDDGITDDQLRELFSNFGKITSCKIMRDQNGVSKGSGFVSF 252
Query: 83 NTPAEAKKARVEMNGHLIGSKPVIITFVELK 113
+T EA +A EMNG +I KP+ + F + K
Sbjct: 253 STREEASQALTEMNGKMISGKPLYVAFAQRK 283
>gi|366999420|ref|XP_003684446.1| hypothetical protein TPHA_0B03420 [Tetrapisispora phaffii CBS 4417]
gi|357522742|emb|CCE62012.1| hypothetical protein TPHA_0B03420 [Tetrapisispora phaffii CBS 4417]
Length = 579
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 81/276 (29%), Positives = 140/276 (50%), Gaps = 13/276 (4%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL P +DN+AL + F FG + ++A ++ +S+GF + F A +A +N
Sbjct: 140 IFIKNLHPDIDNKALHDTFSVFGNILSCKIATDETGKSKGFGFVHFEEDNAAVEAVDAIN 199
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G ++ + V + K + SK EE + V+VKN+ E+E + F K+G
Sbjct: 200 GMMLNGREVYVAQHVSKKDRESKL---EEVKANFTNVYVKNVDVDTPEDEFTALFSKYGP 256
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPG 211
I + + +D GK +GFGFI F ++ A KA+ E+N + +V A+ +
Sbjct: 257 ITSIAMEKDSEGKFRGFGFINFENHDDAAKAVEELNDLEFKGQKLYVGRAQKKYERLQEL 316
Query: 212 KKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHI 266
KK + + L + +FV NL +I++ + E FA FG+ITS+ ++ + K+
Sbjct: 317 KKQYEASRLEKLAKYQGVNLFVKNLDDSIDDEKLEAEFAPFGSITSAKVMRNEEGKSKNF 376
Query: 267 GFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ F P+ AT A++ N + KPL V ++ K
Sbjct: 377 GFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRK 412
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 85/268 (31%), Positives = 126/268 (47%), Gaps = 24/268 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+PSV L + F G + +RV R+ S G+A + FN + A ++
Sbjct: 52 LYVGELDPSVSEALLYDIFSPIGPVTSIRVCRDAITKTSLGYAYVNFNDHESGRTAIEKL 111
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N I KP I + + P R K G +F+KNL +D + L F FG
Sbjct: 112 NYSPIKGKPCRIMWSQRDPALRKKGAG---------NIFIKNLHPDIDNKALHDTFSVFG 162
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ KI DE GKSKGFGF+ F AA +A+ +NG M+ +V+ + V
Sbjct: 163 NILSCKIATDETGKSKGFGFVHFEEDNAAVEAVDAINGMMLNGREVYVA-------QHVS 215
Query: 216 PKVKPPLLQPARKN--KIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGF 268
K + L+ + N ++V N+ + EF LF+++G ITS ++ D + GF
Sbjct: 216 KKDRESKLEEVKANFTNVYVKNVDVDTPEDEFTALFSKYGPITSIAMEKDSEGKFRGFGF 275
Query: 269 IEFIMPKHATHAVSTMNGHVFKSKPLKV 296
I F A AV +N FK + L V
Sbjct: 276 INFENHDDAAKAVEELNDLEFKGQKLYV 303
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 51/88 (57%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L V NL+ S+D++ L EF FG++ +V RN+ +S+ F + F+TP EA KA
Sbjct: 331 YQGVNLFVKNLDDSIDDEKLEAEFAPFGSITSAKVMRNEEGKSKNFGFVCFSTPEEATKA 390
Query: 92 RVEMNGHLIGSKPVIITFVELKPGQRSK 119
E N ++ KP+ + + K +RS+
Sbjct: 391 ITEKNQQIVAGKPLYVAIAQRKDVRRSQ 418
>gi|50293737|ref|XP_449280.1| hypothetical protein [Candida glabrata CBS 138]
gi|74690665|sp|Q6FKG4.1|PABP_CANGA RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|49528593|emb|CAG62254.1| unnamed protein product [Candida glabrata]
Length = 579
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 86/286 (30%), Positives = 134/286 (46%), Gaps = 24/286 (8%)
Query: 19 DEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGF 77
D+ +N+EN L+V +L+PSV L + F G + +RV R+ S G+
Sbjct: 19 DKQEGTNEENQSETVSASLYVGDLDPSVSEAHLYDIFSPIGAVSSIRVCRDAITKTSLGY 78
Query: 78 AIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKN 137
A + FN AK A ++N I K I + + P R K G +F+KN
Sbjct: 79 AYVNFNDHDAAKTAIEKLNFTPIKGKLCRIMWSQRDPSLRKKGAG---------NIFIKN 129
Query: 138 LVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQ 197
L +D + L F FGNI+ K+ DE GKSKGFG++ F ++A +AI +NG ++
Sbjct: 130 LHPDIDNKALYDTFSVFGNILSSKVATDETGKSKGFGYVHFEEDESASEAIDALNGMLLN 189
Query: 198 HNSTFVSLAEIVPGKKVFPKVKPPLLQPARKN--KIFVANLPSNINNSEFEELFARFGTI 255
+V G + K + + + N +++ N+ + + EFEEL A+FG
Sbjct: 190 GQEIYV-------GPHLSKKERESKFEEMKANFTNVYIKNINTETTDKEFEELVAKFGKT 242
Query: 256 TSSSLV-----SDKHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
S L +K GF+ F+ + A V +N FK +PL V
Sbjct: 243 DSVVLERTPEGENKGFGFVNFVNHEDAVKCVEELNNTEFKGQPLYV 288
Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 84/309 (27%), Positives = 147/309 (47%), Gaps = 23/309 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK+ W + D R N + + NL P +DN+AL + F FG +
Sbjct: 102 KGKLCRIMWSQ---RDPSLRKKGAGN-------IFIKNLHPDIDNKALYDTFSVFGNILS 151
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+VA ++ +S+GF + F A +A +NG L+ + + + K + SK
Sbjct: 152 SKVATDETGKSKGFGYVHFEEDESASEAIDALNGMLLNGQEIYVGPHLSKKERESKF--- 208
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
EE + V++KN+ ++E + KFG V + R G++KGFGF+ F +++
Sbjct: 209 EEMKANFTNVYIKNINTETTDKEFEELVAKFGKTDSVVLERTPEGENKGFGFVNFVNHED 268
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A K + E+N + +V+ A+ KK + + + + +F+ NL
Sbjct: 269 AVKCVEELNNTEFKGQPLYVNRAQKKYERQQELKKQYEATRMEKMAKYQGINLFIKNLDD 328
Query: 239 NINNSEFEELFARFGTITSSSLVS-----DKHIGFIEFIMPKHATHAVSTMNGHVFKSKP 293
+I++ + EE FA +GTITS+ +++ K GF+ F P+ AT A++ N + KP
Sbjct: 329 SIDDKKLEEEFAPYGTITSAKVMTTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKP 388
Query: 294 LKVTLSGTK 302
L V ++ K
Sbjct: 389 LYVAIAQRK 397
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 51/88 (57%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L + NL+ S+D++ L EF +GT+ +V +N +S+GF + F+TP EA KA
Sbjct: 316 YQGINLFIKNLDDSIDDKKLEEEFAPYGTITSAKVMTTENGKSKGFGFVCFSTPEEATKA 375
Query: 92 RVEMNGHLIGSKPVIITFVELKPGQRSK 119
E N ++ KP+ + + K +RS+
Sbjct: 376 ITEKNQQIVAGKPLYVAIAQRKDVRRSQ 403
>gi|147769692|emb|CAN65531.1| hypothetical protein VITISV_039630 [Vitis vinifera]
Length = 555
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 80/276 (28%), Positives = 150/276 (54%), Gaps = 17/276 (6%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L V NL+PS+++ +L + F KFG + +VA +N +S+ F + F++ A A +N
Sbjct: 119 LFVKNLDPSINSASLQDIFCKFGNILSCKVAE-ENGKSKCFGFVQFDSDDSATAALNALN 177
Query: 97 GHLIGSKPVIIT-FVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
++ K + ++ FV K +R + EE ++ V+VKNL E + E+ ++ F +FG
Sbjct: 178 DTMLDGKKLFVSKFV--KKCERKE--ASEETKFTN--VYVKNLGEDLTEDIIRDKFSEFG 231
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
+ V I++D NGKS+GFGF+ F S A+KA+ +NG M+ FV A+ ++
Sbjct: 232 KVGTVVIMKDGNGKSRGFGFVNFESPDEAKKAVEALNGAMLGSKKLFVGRAQKKAERQEL 291
Query: 216 PKVKPPLLQP----ARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS-----DKHI 266
K + ++ + + ++V NL +++++ + +E F+ G ITS+ ++ K
Sbjct: 292 LKHEKEMVNCNIGKEKASNLYVKNLDASVDDDKLQEHFSSCGQITSAKVMRHDSGLSKGF 351
Query: 267 GFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ F + A A++T+NG + + L + ++ K
Sbjct: 352 GFVCFSTSEEAQKALTTLNGTLLHGRSLYIAMAQRK 387
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 113/198 (57%), Gaps = 8/198 (4%)
Query: 26 KENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTP 85
KE ++ K ++V NL + + ++F +FG + V + ++ N +SRGF + F +P
Sbjct: 198 KEASEETKFTNVYVKNLGEDLTEDIIRDKFSEFGKVGTVVIMKDGNGKSRGFGFVNFESP 257
Query: 86 AEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQY-------KKDKVFVKNL 138
EAKKA +NG ++GSK + + + K +R + + E++ K ++VKNL
Sbjct: 258 DEAKKAVEALNGAMLGSKKLFVGRAQ-KKAERQELLKHEKEMVNCNIGKEKASNLYVKNL 316
Query: 139 VETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQH 198
+VD+++L+ HF G I K++R ++G SKGFGF+ F + + A+KA+ +NG ++
Sbjct: 317 DASVDDDKLQEHFSSCGQITSAKVMRHDSGLSKGFGFVCFSTSEEAQKALTTLNGTLLHG 376
Query: 199 NSTFVSLAEIVPGKKVFP 216
S ++++A+ ++ P
Sbjct: 377 RSLYIAMAQRKEDRQRIP 394
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 79/266 (29%), Positives = 127/266 (47%), Gaps = 23/266 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L+P V L++ F G L VR+ R+ + +S +A + F P++A KA +
Sbjct: 31 LYVGDLDPEVSEVELVDVFSGMGPLVSVRLCRDSLSGKSLCYAYVNFFYPSDASKALACL 90
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N + KP+ I + P R + +FVKNL +++ L+ F KFG
Sbjct: 91 NHTKLMGKPMRIMWSHRDPLPRKTGLA---------NLFVKNLDPSINSASLQDIFCKFG 141
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ +ENGKSK FGF+QF S +A A+ +N M+ FVS K V
Sbjct: 142 NILSCKVA-EENGKSKCFGFVQFDSDDSATAALNALNDTMLDGKKLFVS-------KFVK 193
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIE 270
+ + + ++V NL ++ + F+ FG + + ++ D + GF+
Sbjct: 194 KCERKEASEETKFTNVYVKNLGEDLTEDIIRDKFSEFGKVGTVVIMKDGNGKSRGFGFVN 253
Query: 271 FIMPKHATHAVSTMNGHVFKSKPLKV 296
F P A AV +NG + SK L V
Sbjct: 254 FESPDEAKKAVEALNGAMLGSKKLFV 279
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 48/89 (53%)
Query: 33 KENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKAR 92
K + L+V NL+ SVD+ L F G + +V R+ + S+GF + F+T EA+KA
Sbjct: 307 KASNLYVKNLDASVDDDKLQEHFSSCGQITSAKVMRHDSGLSKGFGFVCFSTSEEAQKAL 366
Query: 93 VEMNGHLIGSKPVIITFVELKPGQRSKPV 121
+NG L+ + + I + K ++ P+
Sbjct: 367 TTLNGTLLHGRSLYIAMAQRKEDRQRIPM 395
>gi|1262583|dbj|BAA02244.1| polyadenylate binding protein II [Homo sapiens]
Length = 193
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 70/189 (37%), Positives = 108/189 (57%), Gaps = 11/189 (5%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMN 192
V++KN E VD+E LK F +FG + VK++RD NGKSKGFGF+ + ++ A KA+ EMN
Sbjct: 4 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMN 63
Query: 193 GRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEE 247
G+ I FV A+ K+ F ++K + + +++ NL I++ + +
Sbjct: 64 GKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRK 123
Query: 248 LFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKP 303
F+ FG+ITS+ ++ + K GF+ F P+ AT AV+ MNG + SKPL V L+ K
Sbjct: 124 EFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 183
Query: 304 --GVSITNP 310
+TNP
Sbjct: 184 ERKAHLTNP 192
Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 105/179 (58%), Gaps = 10/179 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+++ N VD+++L F +FG V+V R+ N +S+GF + + +A KA EMN
Sbjct: 4 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMN 63
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKV--------FVKNLVETVDEEELK 148
G I K + + + K +R + + +Q K++++ ++KNL +T+D+E+L+
Sbjct: 64 GKEISGKIIFVGRAQ-KKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 122
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
F FG+I K++ E+G+SKGFGF+ F S + A KA+ EMNGR++ +V+LA+
Sbjct: 123 KEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 180
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 56/93 (60%), Gaps = 1/93 (1%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L++ NL+ ++D++ L EF FG++ +V ++ S+GF + F++P EA KA
Sbjct: 102 YQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKA 160
Query: 92 RVEMNGHLIGSKPVIITFVELKPGQRSKPVGPE 124
EMNG ++GSKP+ + + K +++ PE
Sbjct: 161 VTEMNGRIVGSKPLYVALAQRKEERKAHLTNPE 193
>gi|403169797|ref|XP_003889581.1| hypothetical protein, variant [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
gi|375168424|gb|EHS63645.1| hypothetical protein, variant [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
Length = 715
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 80/267 (29%), Positives = 133/267 (49%), Gaps = 20/267 (7%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+P+V L F G + +RV R+ S G+A + + A+A++A ++
Sbjct: 86 LYVGELDPTVTEAMLYEIFSMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADAERALEQL 145
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI +K I + + P R G +F+KNL ET+D + L F FG
Sbjct: 146 NYSLIKNKACRIMWSQRDPSLRKTGQG---------NIFIKNLDETIDNKALHDTFAAFG 196
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
+I+ K+ DE+G SKG+GF+ + + ++AE AI +NG + FV + VP +
Sbjct: 197 DILSCKVATDEHGASKGYGFVHYVTGESAEAAIKGVNGMQLNDKVVFVGIH--VPRRDRQ 254
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKH-----IGFIE 270
K+ Q +++ NLP+ E E+F +FG ITS+++ SD+H GF+
Sbjct: 255 AKIDEVRSQ---FTNLYIKNLPTETTTEELNEVFGKFGPITSAAVQSDEHGKHRGFGFVN 311
Query: 271 FIMPKHATHAVSTMNGHVFKSKPLKVT 297
+ + A+ AV ++ +K L V
Sbjct: 312 YENHESASKAVDALHDKDYKGNVLYVA 338
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 81/279 (29%), Positives = 143/279 (51%), Gaps = 13/279 (4%)
Query: 34 ENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARV 93
+ + + NL+ ++DN+AL + F FG + +VA +++ S+G+ + + T A+ A
Sbjct: 171 QGNIFIKNLDETIDNKALHDTFAAFGDILSCKVATDEHGASKGYGFVHYVTGESAEAAIK 230
Query: 94 EMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIK 153
+NG + K + FV + +R + +E + + +++KNL EEL F K
Sbjct: 231 GVNGMQLNDK---VVFVGIHVPRRDRQAKIDEVRSQFTNLYIKNLPTETTTEELNEVFGK 287
Query: 154 FGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----I 208
FG I + DE+GK +GFGF+ + ++++A KA+ ++ + + N +V+ A+
Sbjct: 288 FGPITSAAVQSDEHGKHRGFGFVNYENHESASKAVDALHDKDYKGNVLYVARAQKRTERD 347
Query: 209 VPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----- 263
KK + K + ++V NL ++ + + F FGTITS ++ D
Sbjct: 348 AELKKAHEQQKYETTLKYQGVNLYVKNLDDEYDDEKLQNEFTPFGTITSCKVMKDEKGTS 407
Query: 264 KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
K GF+ F P AT AV+ MNG + SKPL V+L+ K
Sbjct: 408 KGFGFVCFSSPDEATKAVAEMNGKMLGSKPLYVSLAQRK 446
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 52/82 (63%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L+V NL+ D++ L NEF FGT+ +V +++ S+GF + F++P EA KA
Sbjct: 365 YQGVNLYVKNLDDEYDDEKLQNEFTPFGTITSCKVMKDEKGTSKGFGFVCFSSPDEATKA 424
Query: 92 RVEMNGHLIGSKPVIITFVELK 113
EMNG ++GSKP+ ++ + K
Sbjct: 425 VAEMNGKMLGSKPLYVSLAQRK 446
>gi|395506976|ref|XP_003757804.1| PREDICTED: polyadenylate-binding protein 1-like [Sarcophilus
harrisii]
Length = 594
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 80/252 (31%), Positives = 136/252 (53%), Gaps = 13/252 (5%)
Query: 60 TLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSK 119
TL V V ++N SRGF + F T A +A MNG L+ + V + + + +R
Sbjct: 109 TLCRVAVVCDENG-SRGFGFVHFETQEAANQAISTMNGMLLNDRKVFVGHFKSR-QEREA 166
Query: 120 PVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFF 179
+G ++ ++VKN E VD++ L+ F +FG + VK++ DENG S+GFGF+ F
Sbjct: 167 ELGARALEF--TNIYVKNFEEDVDDQCLEELFSEFGKTLSVKVMVDENGHSRGFGFVNFE 224
Query: 180 SYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPG-----KKVFPKVKPPLLQPARKNKIFVA 234
++ A+KA+ MNG+ + +V A+ K+ F ++K + + ++V
Sbjct: 225 KHEEAQKAVNSMNGKALGGRVLYVGRAQKRTERQGELKRRFEQMKQERVNRYQGVNLYVK 284
Query: 235 NLPSNINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFK 290
NL I++ + + F+ +G ITS+ ++++ K GF+ F P+ AT AV+ MNG +
Sbjct: 285 NLDDVIDDEKLRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVS 344
Query: 291 SKPLKVTLSGTK 302
+KPL V L+ K
Sbjct: 345 TKPLYVALAQRK 356
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 63/179 (35%), Positives = 100/179 (55%), Gaps = 10/179 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
++V N E VD+Q L F +FG V+V ++N SRGF + F EA+KA MN
Sbjct: 178 IYVKNFEEDVDDQCLEELFSEFGKTLSVKVMVDENGHSRGFGFVNFEKHEEAQKAVNSMN 237
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKV--------FVKNLVETVDEEELK 148
G +G + + + + K +R + +Q K+++V +VKNL + +D+E+L+
Sbjct: 238 GKALGGRVLYVGRAQ-KRTERQGELKRRFEQMKQERVNRYQGVNLYVKNLDDVIDDEKLR 296
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
F +G I K++ E G SKGFGF+ F S + A KA+ EMNGR++ +V+LA+
Sbjct: 297 KEFSPYGVITSAKVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQ 354
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L+V NL+ +D++ L EF +G + +V + S+GF + F++P EA KA
Sbjct: 276 YQGVNLYVKNLDDVIDDEKLRKEFSPYGVITSAKVM-TEGGHSKGFGFVCFSSPEEATKA 334
Query: 92 RVEMNGHLIGSKPVIITFVELK 113
EMNG ++ +KP+ + + K
Sbjct: 335 VTEMNGRIVSTKPLYVALAQRK 356
>gi|242096254|ref|XP_002438617.1| hypothetical protein SORBIDRAFT_10g022900 [Sorghum bicolor]
gi|241916840|gb|EER89984.1| hypothetical protein SORBIDRAFT_10g022900 [Sorghum bicolor]
Length = 631
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 83/279 (29%), Positives = 139/279 (49%), Gaps = 25/279 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L V NLEPS+D++ L F FGT+ +VA + +S+G+ + + T A+ A +N
Sbjct: 127 LFVKNLEPSIDSKNLYEMFSSFGTILSCKVATDSAGQSKGYGFVQYETEESAQDAINRLN 186
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G L + + FV L +R++ V K V++KNL +++L+ F FG
Sbjct: 187 GMLANDREM---FVGLHMRRRNREV-------KFTNVYIKNLPTEFSDDDLRQEFAPFGE 236
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFP 216
I ++RD NG SK FGF+ F + A +A+ + NG++I + +V A+ ++
Sbjct: 237 ITSAVVMRDVNGVSKCFGFVNFEKPEFALEAVKKANGKVINDKTLYVGRAQKKAERQA-- 294
Query: 217 KVKPPLLQPARKNKI--------FVANLPSNINNSEFEELFARFGTITSSSLVSD----- 263
++K Q R K+ ++ N+ +IN+ + LF FG +TS ++ D
Sbjct: 295 ELKTKFKQEDRDKKVDKPNGINLYLKNIDDSINDEGLKILFEEFGQVTSCKVMVDAQGRS 354
Query: 264 KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
K GF+ F + A++ MNG + KPL V L+ K
Sbjct: 355 KGSGFVLFATAEAGHSAINGMNGRIVGKKPLYVGLAQPK 393
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 78/268 (29%), Positives = 124/268 (46%), Gaps = 27/268 (10%)
Query: 35 NELHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKKARV 93
+ L+V +L SVD L F + L VRV R+ + S G+ + F + EA A
Sbjct: 37 SSLYVGDLAESVDETQLHAVFSQVAPLVSVRVCRDIVSGVSLGYGYVNFYSRQEATCALE 96
Query: 94 EMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIK 153
+N + K + + F P R + +FVKNL ++D + L F
Sbjct: 97 ALNFAPLSGKHIRVMFSNRDPSLRKS---------GRANLFVKNLEPSIDSKNLYEMFSS 147
Query: 154 FGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKK 213
FG I+ K+ D G+SKG+GF+Q+ + ++A+ AI +NG + FV L ++
Sbjct: 148 FGTILSCKVATDSAGQSKGYGFVQYETEESAQDAINRLNGMLANDREMFVGLHMRRRNRE 207
Query: 214 VFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGF 268
V + +++ NLP+ ++ + + FA FG ITS+ ++ D K GF
Sbjct: 208 V------------KFTNVYIKNLPTEFSDDDLRQEFAPFGEITSAVVMRDVNGVSKCFGF 255
Query: 269 IEFIMPKHATHAVSTMNGHVFKSKPLKV 296
+ F P+ A AV NG V K L V
Sbjct: 256 VNFEKPEFALEAVKKANGKVINDKTLYV 283
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 96/191 (50%), Gaps = 10/191 (5%)
Query: 26 KENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTP 85
+ N+ K +++ NL + L EF FG + V R+ N S+ F + F P
Sbjct: 202 RRRNREVKFTNVYIKNLPTEFSDDDLRQEFAPFGEITSAVVMRDVNGVSKCFGFVNFEKP 261
Query: 86 AEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDK---------VFVK 136
A +A + NG +I K + + + K +R + + KQ +DK +++K
Sbjct: 262 EFALEAVKKANGKVINDKTLYVGRAQ-KKAERQAELKTKFKQEDRDKKVDKPNGINLYLK 320
Query: 137 NLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMI 196
N+ +++++E LK F +FG + K++ D G+SKG GF+ F + +A AI MNGR++
Sbjct: 321 NIDDSINDEGLKILFEEFGQVTSCKVMVDAQGRSKGSGFVLFATAEAGHSAINGMNGRIV 380
Query: 197 QHNSTFVSLAE 207
+V LA+
Sbjct: 381 GKKPLYVGLAQ 391
Score = 44.7 bits (104), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 49/93 (52%), Gaps = 2/93 (2%)
Query: 28 NNKVYKEN--ELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTP 85
+ KV K N L++ N++ S++++ L F++FG + +V + S+G ++F T
Sbjct: 306 DKKVDKPNGINLYLKNIDDSINDEGLKILFEEFGQVTSCKVMVDAQGRSKGSGFVLFATA 365
Query: 86 AEAKKARVEMNGHLIGSKPVIITFVELKPGQRS 118
A MNG ++G KP+ + + K +R+
Sbjct: 366 EAGHSAINGMNGRIVGKKPLYVGLAQPKEERRA 398
>gi|328852276|gb|EGG01423.1| hypothetical protein MELLADRAFT_39080 [Melampsora larici-populina
98AG31]
Length = 701
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 77/267 (28%), Positives = 134/267 (50%), Gaps = 20/267 (7%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+P+V L F G + +RV R+ S G+A + + A+A++A ++
Sbjct: 59 LYVGELDPTVTEAMLYEIFSMIGPVSSIRVCRDAVTRRSLGYAYVNYLNAADAERALEQL 118
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI +K I + + P R G +F+KNL ET+D + L F FG
Sbjct: 119 NYSLIKNKACRIMWSQRDPSLRKTGQG---------NIFIKNLDETIDNKALHDTFAAFG 169
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
+I+ K+ D G SKG+GF+ + + ++AE AI +NG + FV + VP ++
Sbjct: 170 DILSCKVAMDSTGASKGYGFVHYVTAESAEAAIKGVNGMQLNDKVVFVGIH--VPRRERQ 227
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD---KH--IGFIE 270
K+ A +++ NLP+ + E E+F+++G +TS+++ +D KH GF+
Sbjct: 228 AKIDEVR---AHFTNLYIKNLPTEVTTEELNEMFSKYGPVTSAAVQADESGKHRGFGFVN 284
Query: 271 FIMPKHATHAVSTMNGHVFKSKPLKVT 297
+ + A+ AV ++ +K L V
Sbjct: 285 YENHESASKAVEALHDKDYKGNILYVA 311
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 83/293 (28%), Positives = 147/293 (50%), Gaps = 41/293 (13%)
Query: 34 ENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARV 93
+ + + NL+ ++DN+AL + F FG + +VA + S+G+ + + T A+ A
Sbjct: 144 QGNIFIKNLDETIDNKALHDTFAAFGDILSCKVAMDSTGASKGYGFVHYVTAESAEAAIK 203
Query: 94 EMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKV-------FVKNLVETVDEEE 146
+NG + K + FV + +R E+Q K D+V ++KNL V EE
Sbjct: 204 GVNGMQLNDK---VVFVGIHVPRR-------ERQAKIDEVRAHFTNLYIKNLPTEVTTEE 253
Query: 147 LKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLA 206
L F K+G + + DE+GK +GFGF+ + ++++A KA+ ++ + + N +V+ A
Sbjct: 254 LNEMFSKYGPVTSAAVQADESGKHRGFGFVNYENHESASKAVEALHDKDYKGNILYVARA 313
Query: 207 EIVPGKKVFPKVKPPLLQPARKNK------------IFVANLPSNINNSEFEELFARFGT 254
+ K+V + L+ A + + +++ NL ++ + + F FGT
Sbjct: 314 Q----KRVERDAE---LRRAHEQQKYETTLKYQGVNLYIKNLDDEYDDEKLQAEFLPFGT 366
Query: 255 ITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
ITS ++ D + GF+ F P AT AV+ MNG + SKPL V+L+ K
Sbjct: 367 ITSCKVMKDDKGVSRGFGFVCFSAPDEATKAVAEMNGKMLGSKPLYVSLAQRK 419
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 49/82 (59%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L++ NL+ D++ L EF FGT+ +V ++ SRGF + F+ P EA KA
Sbjct: 338 YQGVNLYIKNLDDEYDDEKLQAEFLPFGTITSCKVMKDDKGVSRGFGFVCFSAPDEATKA 397
Query: 92 RVEMNGHLIGSKPVIITFVELK 113
EMNG ++GSKP+ ++ + K
Sbjct: 398 VAEMNGKMLGSKPLYVSLAQRK 419
>gi|403417917|emb|CCM04617.1| predicted protein [Fibroporia radiculosa]
Length = 671
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 84/306 (27%), Positives = 152/306 (49%), Gaps = 23/306 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KG+ W + D R + N + + NL+ +DN+AL + F FG +
Sbjct: 111 KGRACRIMWSQ---RDPALRKTGQGN-------IFIKNLDEQIDNKALHDTFAAFGNVLS 160
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+VA +++ S+G+ + + T A+ A +NG L+ K V + + + ++SK
Sbjct: 161 CKVATDEHGRSKGYGFVHYETAEAAETAIKAVNGMLLNDKKVYVGYHISRKERQSK---L 217
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
EE + + ++VKN V EEE + F +FG++ I RD+ G+S+GFGF+ F +
Sbjct: 218 EEMKAQFTNIYVKNFDPEVTEEEFMALFQQFGSVTSAVIQRDDEGRSRGFGFVNFEVHDE 277
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAEIVPG-----KKVFPKVKPPLLQPARKNKIFVANLPS 238
A+KA+ ++ + FVS A+ ++ + + K + + +++ NL
Sbjct: 278 AQKAVEGLHDLDFKGKKLFVSRAQKKAEREQELRQSYEQAKMEKMSKFQGVNLYIKNLED 337
Query: 239 NINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKP 293
++++ F FG+ITS+ ++ D K GF+ F P AT AV+ MN + +KP
Sbjct: 338 DLDDDRLRTEFEPFGSITSAKVMRDEKGTSKGFGFVCFSSPDEATKAVAEMNNKMIGTKP 397
Query: 294 LKVTLS 299
L V+L+
Sbjct: 398 LYVSLA 403
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 77/269 (28%), Positives = 129/269 (47%), Gaps = 24/269 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+P+V L F G + +RV R+ S G+A + + A+ ++A ++
Sbjct: 46 LYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEQL 105
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N I + I + + P R G +F+KNL E +D + L F FG
Sbjct: 106 NYSSIKGRACRIMWSQRDPALRKTGQG---------NIFIKNLDEQIDNKALHDTFAAFG 156
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
N++ K+ DE+G+SKG+GF+ + + +AAE AI +NG ++ +V G +
Sbjct: 157 NVLSCKVATDEHGRSKGYGFVHYETAEAAETAIKAVNGMLLNDKKVYV-------GYHIS 209
Query: 216 PKVKPPLLQP--ARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGF 268
K + L+ A+ I+V N + EF LF +FG++TS+ + D + GF
Sbjct: 210 RKERQSKLEEMKAQFTNIYVKNFDPEVTEEEFMALFQQFGSVTSAVIQRDDEGRSRGFGF 269
Query: 269 IEFIMPKHATHAVSTMNGHVFKSKPLKVT 297
+ F + A AV ++ FK K L V+
Sbjct: 270 VNFEVHDEAQKAVEGLHDLDFKGKKLFVS 298
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 98/179 (54%), Gaps = 9/179 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
++V N +P V + + F++FG++ + R+ SRGF + F EA+KA ++
Sbjct: 227 IYVKNFDPEVTEEEFMALFQQFGSVTSAVIQRDDEGRSRGFGFVNFEVHDEAQKAVEGLH 286
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDK--------VFVKNLVETVDEEELK 148
K + ++ + K +R + + +Q K +K +++KNL + +D++ L+
Sbjct: 287 DLDFKGKKLFVSRAQ-KKAEREQELRQSYEQAKMEKMSKFQGVNLYIKNLEDDLDDDRLR 345
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
+ F FG+I K++RDE G SKGFGF+ F S A KA+ EMN +MI +VSLA+
Sbjct: 346 TEFEPFGSITSAKVMRDEKGTSKGFGFVCFSSPDEATKAVAEMNNKMIGTKPLYVSLAQ 404
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 52/83 (62%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L++ NLE +D+ L EF+ FG++ +V R++ S+GF + F++P EA KA EMN
Sbjct: 330 LYIKNLEDDLDDDRLRTEFEPFGSITSAKVMRDEKGTSKGFGFVCFSSPDEATKAVAEMN 389
Query: 97 GHLIGSKPVIITFVELKPGQRSK 119
+IG+KP+ ++ + + +R +
Sbjct: 390 NKMIGTKPLYVSLAQRRDVRRQQ 412
>gi|324511850|gb|ADY44928.1| Polyadenylate-binding protein 1, partial [Ascaris suum]
Length = 544
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 80/273 (29%), Positives = 128/273 (46%), Gaps = 20/273 (7%)
Query: 33 KENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKA 91
K+ L+V +L P V+ L+ +F G + +RV R+ S G+A + F P +AK+A
Sbjct: 14 KKPSLYVGDLHPDVNETVLLEKFSNIGRVLSIRVCRDALTRRSLGYAYVNFERPEDAKQA 73
Query: 92 RVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHF 151
MN ++ +P+ I + + +P G VFVKNL +V+ + L + F
Sbjct: 74 LETMNFDIVHGRPIRIMWSQRRPSTSRVAAG---------NVFVKNLNGSVNSKALYNKF 124
Query: 152 IKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPG 211
FGNI+ K+ DE KSKG+GF+QF + +AA KAI NG + + +V +
Sbjct: 125 SVFGNIVSCKLAVDEQSKSKGYGFVQFETEEAARKAIDGTNGVIFEGKRIYVGRFQSRSE 184
Query: 212 KKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKH-----I 266
+ K +FV N ++ + ++LFA+FG I S ++ D
Sbjct: 185 RSEQAKRTTNCF-----TNVFVKNFADILDKEKLQQLFAKFGKIVSCAVSVDGDGKPNGF 239
Query: 267 GFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299
GF+ F P A AV M + K+ +S
Sbjct: 240 GFVAFENPDDAEKAVKDMQDYHLPGSDRKLYVS 272
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 78/281 (27%), Positives = 138/281 (49%), Gaps = 21/281 (7%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ V NL SV+++AL N+F FG + ++A ++ +S+G+ + F T A+KA N
Sbjct: 106 VFVKNLNGSVNSKALYNKFSVFGNIVSCKLAVDEQSKSKGYGFVQFETEEAARKAIDGTN 165
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G + K + + + + +RS+ + VFVKN + +D+E+L+ F KFG
Sbjct: 166 GVIFEGKRIYVGRFQSRS-ERSEQAKRTTNCFTN--VFVKNFADILDKEKLQQLFAKFGK 222
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMI--QHNSTFVS--------LA 206
I+ + D +GK GFGF+ F + AEKA+ +M + +VS LA
Sbjct: 223 IVSCAVSVDGDGKPNGFGFVAFENPDDAEKAVKDMQDYHLPGSDRKLYVSRFQKKCERLA 282
Query: 207 EIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLV-SD-- 263
E+ ++ + + A +++ NL I++ F +G + S+ ++ SD
Sbjct: 283 ELDRKYQLEKNERAKRYEGA---NLYLKNLDDAIDDDMLRRSFGEYGNVISAKVMRSDDG 339
Query: 264 --KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
K GF+ F P A A++ M G + +KPL V+++ K
Sbjct: 340 RSKGFGFVCFDKPDEAVKAMTAMKGKMVCTKPLYVSMAQRK 380
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 96/188 (51%), Gaps = 9/188 (4%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ V N +D + L F KFG + V+ + + + GF + F P +A+KA +M
Sbjct: 199 VFVKNFADILDKEKLQQLFAKFGKIVSCAVSVDGDGKPNGFGFVAFENPDDAEKAVKDMQ 258
Query: 97 G-HLIGSKPVIITFVELKPGQRSKPV--------GPEEKQYKKDKVFVKNLVETVDEEEL 147
HL GS + K +R + K+Y+ +++KNL + +D++ L
Sbjct: 259 DYHLPGSDRKLYVSRFQKKCERLAELDRKYQLEKNERAKRYEGANLYLKNLDDAIDDDML 318
Query: 148 KSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
+ F ++GN+I K++R ++G+SKGFGF+ F A KA+ M G+M+ +VS+A+
Sbjct: 319 RRSFGEYGNVISAKVMRSDDGRSKGFGFVCFDKPDEAVKAMTAMKGKMVCTKPLYVSMAQ 378
Query: 208 IVPGKKVF 215
+K F
Sbjct: 379 RKEDRKAF 386
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 52/92 (56%)
Query: 27 ENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPA 86
E K Y+ L++ NL+ ++D+ L F ++G + +V R+ + S+GF + F+ P
Sbjct: 294 ERAKRYEGANLYLKNLDDAIDDDMLRRSFGEYGNVISAKVMRSDDGRSKGFGFVCFDKPD 353
Query: 87 EAKKARVEMNGHLIGSKPVIITFVELKPGQRS 118
EA KA M G ++ +KP+ ++ + K +++
Sbjct: 354 EAVKAMTAMKGKMVCTKPLYVSMAQRKEDRKA 385
Score = 42.4 bits (98), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 44/87 (50%), Gaps = 6/87 (6%)
Query: 226 ARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGF--IEFIMPKHATH 279
A+K ++V +L ++N + E F+ G + S + D + +G+ + F P+ A
Sbjct: 13 AKKPSLYVGDLHPDVNETVLLEKFSNIGRVLSIRVCRDALTRRSLGYAYVNFERPEDAKQ 72
Query: 280 AVSTMNGHVFKSKPLKVTLSGTKPGVS 306
A+ TMN + +P+++ S +P S
Sbjct: 73 ALETMNFDIVHGRPIRIMWSQRRPSTS 99
>gi|403169799|ref|XP_003329214.2| hypothetical protein PGTG_10266 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375168425|gb|EFP84795.2| hypothetical protein PGTG_10266 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 804
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 80/267 (29%), Positives = 133/267 (49%), Gaps = 20/267 (7%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+P+V L F G + +RV R+ S G+A + + A+A++A ++
Sbjct: 175 LYVGELDPTVTEAMLYEIFSMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADAERALEQL 234
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI +K I + + P R G +F+KNL ET+D + L F FG
Sbjct: 235 NYSLIKNKACRIMWSQRDPSLRKTGQG---------NIFIKNLDETIDNKALHDTFAAFG 285
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
+I+ K+ DE+G SKG+GF+ + + ++AE AI +NG + FV + VP +
Sbjct: 286 DILSCKVATDEHGASKGYGFVHYVTGESAEAAIKGVNGMQLNDKVVFVGIH--VPRRDRQ 343
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKH-----IGFIE 270
K+ Q +++ NLP+ E E+F +FG ITS+++ SD+H GF+
Sbjct: 344 AKIDEVRSQ---FTNLYIKNLPTETTTEELNEVFGKFGPITSAAVQSDEHGKHRGFGFVN 400
Query: 271 FIMPKHATHAVSTMNGHVFKSKPLKVT 297
+ + A+ AV ++ +K L V
Sbjct: 401 YENHESASKAVDALHDKDYKGNVLYVA 427
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 81/279 (29%), Positives = 143/279 (51%), Gaps = 13/279 (4%)
Query: 34 ENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARV 93
+ + + NL+ ++DN+AL + F FG + +VA +++ S+G+ + + T A+ A
Sbjct: 260 QGNIFIKNLDETIDNKALHDTFAAFGDILSCKVATDEHGASKGYGFVHYVTGESAEAAIK 319
Query: 94 EMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIK 153
+NG + K + FV + +R + +E + + +++KNL EEL F K
Sbjct: 320 GVNGMQLNDK---VVFVGIHVPRRDRQAKIDEVRSQFTNLYIKNLPTETTTEELNEVFGK 376
Query: 154 FGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----I 208
FG I + DE+GK +GFGF+ + ++++A KA+ ++ + + N +V+ A+
Sbjct: 377 FGPITSAAVQSDEHGKHRGFGFVNYENHESASKAVDALHDKDYKGNVLYVARAQKRTERD 436
Query: 209 VPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----- 263
KK + K + ++V NL ++ + + F FGTITS ++ D
Sbjct: 437 AELKKAHEQQKYETTLKYQGVNLYVKNLDDEYDDEKLQNEFTPFGTITSCKVMKDEKGTS 496
Query: 264 KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
K GF+ F P AT AV+ MNG + SKPL V+L+ K
Sbjct: 497 KGFGFVCFSSPDEATKAVAEMNGKMLGSKPLYVSLAQRK 535
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 52/82 (63%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L+V NL+ D++ L NEF FGT+ +V +++ S+GF + F++P EA KA
Sbjct: 454 YQGVNLYVKNLDDEYDDEKLQNEFTPFGTITSCKVMKDEKGTSKGFGFVCFSSPDEATKA 513
Query: 92 RVEMNGHLIGSKPVIITFVELK 113
EMNG ++GSKP+ ++ + K
Sbjct: 514 VAEMNGKMLGSKPLYVSLAQRK 535
>gi|430814566|emb|CCJ28224.1| unnamed protein product, partial [Pneumocystis jirovecii]
Length = 685
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 81/278 (29%), Positives = 138/278 (49%), Gaps = 31/278 (11%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN-G 97
+ NL+ S+DN+AL + F FG++ +VA ++ S+G+ + + T A+ A + G
Sbjct: 168 IKNLDASIDNKALHDTFTAFGSILSCKVAVDELGNSKGYGFVHYKTSESAEAAIKHVYVG 227
Query: 98 HLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNI 157
H + K F ++K K V+VKN+ + E E + F KFGN+
Sbjct: 228 HHVSKKDRQSKFDDMK--------------LKFTNVYVKNIDPEISEAEFEELFKKFGNV 273
Query: 158 IEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLA--------EIV 209
+ + DENGKS+GFGF+ + +++ A +A+ E++ + +V A E+
Sbjct: 274 TSLSLSVDENGKSRGFGFVNYENHEDAARAVEELHDTEYKDRKLYVCRAQKKHEREEEL- 332
Query: 210 PGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----K 264
+K + + K L +FV NL +I++ + F+ +GTITS+ ++ D K
Sbjct: 333 --RKQYEQAKLDKLNKYNGINLFVKNLDDDIDDERLRQEFSIYGTITSAKIMVDDNGKSK 390
Query: 265 HIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ F P AT A++ MN + KPL V L+ K
Sbjct: 391 GFGFVCFSSPDEATKAITEMNQRMVSGKPLYVALAQRK 428
Score = 107 bits (266), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 81/272 (29%), Positives = 128/272 (47%), Gaps = 35/272 (12%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAE-----AKK 90
L+V L+PSV L F G + +RV R+ S G+A + F+ ++ ++
Sbjct: 73 LYVGELDPSVTEAMLFELFNNIGAVASIRVCRDAVTRRSLGYAYVNFHNSSDVNLLTGER 132
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A E+N LI KP I + + P R G VF+KNL ++D + L
Sbjct: 133 ALDELNYTLIKGKPCRIMWSQRDPSLRKTGTG---------NVFIKNLDASIDNKALHDT 183
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVP 210
F FG+I+ K+ DE G SKG+GF+ + + ++AE AI +H V + V
Sbjct: 184 FTAFGSILSCKVAVDELGNSKGYGFVHYKTSESAEAAI--------KH----VYVGHHVS 231
Query: 211 GKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKH----- 265
K K L + ++V N+ I+ +EFEELF +FG +TS SL D++
Sbjct: 232 KKDRQSKFDDMKL---KFTNVYVKNIDPEISEAEFEELFKKFGNVTSLSLSVDENGKSRG 288
Query: 266 IGFIEFIMPKHATHAVSTMNGHVFKSKPLKVT 297
GF+ + + A AV ++ +K + L V
Sbjct: 289 FGFVNYENHEDAARAVEELHDTEYKDRKLYVC 320
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 105/193 (54%), Gaps = 9/193 (4%)
Query: 23 RSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVF 82
R +K ++ K ++V N++P + FKKFG + + ++ ++N +SRGF + +
Sbjct: 235 RQSKFDDMKLKFTNVYVKNIDPEISEAEFEELFKKFGNVTSLSLSVDENGKSRGFGFVNY 294
Query: 83 NTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKV--------F 134
+A +A E++ + + + + K +R + + + +Q K DK+ F
Sbjct: 295 ENHEDAARAVEELHDTEYKDRKLYVCRAQ-KKHEREEELRKQYEQAKLDKLNKYNGINLF 353
Query: 135 VKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGR 194
VKNL + +D+E L+ F +G I KI+ D+NGKSKGFGF+ F S A KAI EMN R
Sbjct: 354 VKNLDDDIDDERLRQEFSIYGTITSAKIMVDDNGKSKGFGFVCFSSPDEATKAITEMNQR 413
Query: 195 MIQHNSTFVSLAE 207
M+ +V+LA+
Sbjct: 414 MVSGKPLYVALAQ 426
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 58/106 (54%), Gaps = 5/106 (4%)
Query: 19 DEGARSNKENNKVYKENE-----LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDE 73
+E R E K+ K N+ L V NL+ +D++ L EF +GT+ ++ + N +
Sbjct: 329 EEELRKQYEQAKLDKLNKYNGINLFVKNLDDDIDDERLRQEFSIYGTITSAKIMVDDNGK 388
Query: 74 SRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSK 119
S+GF + F++P EA KA EMN ++ KP+ + + K +RS+
Sbjct: 389 SKGFGFVCFSSPDEATKAITEMNQRMVSGKPLYVALAQRKDVRRSQ 434
>gi|254567738|ref|XP_002490979.1| Poly(A) binding protein, part of the 3'-end RNA-processing complex,
mediates interactions between th [Komagataella pastoris
GS115]
gi|238030776|emb|CAY68699.1| Poly(A) binding protein, part of the 3'-end RNA-processing complex,
mediates interactions between th [Komagataella pastoris
GS115]
gi|328352488|emb|CCA38887.1| Polyadenylate-binding protein, cytoplasmic and nuclear
[Komagataella pastoris CBS 7435]
Length = 626
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 79/276 (28%), Positives = 139/276 (50%), Gaps = 13/276 (4%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+P+++N+ L + F FG + +VA ++N S+GF + + + A+ A +N
Sbjct: 142 IFIKNLDPAIENKTLHDTFSSFGKVLSCKVATDENGNSKGFGFVHYESDEAAQAAIENIN 201
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G L+ + + + K + S+ +E VFVKN E+EL+ F +G
Sbjct: 202 GMLLNGREIYVGPHLAKKDRESRF---QEMIKNYTNVFVKNFDTESTEDELRELFESYGP 258
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPG 211
I + + D G +KGFGF+ F + A KA+ +N + + +V A+ +
Sbjct: 259 ITSIHLQVDSEGHNKGFGFVNFAEHDDAVKAVEALNDKEYKGKPLYVGRAQKKNERVHEL 318
Query: 212 KKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKH-----I 266
K + + LQ + +F+ NL +I+++ EE F FGTITS+ ++ D++
Sbjct: 319 TKKYEADRLEKLQKYQSVNLFIKNLDESIDDARLEEEFKPFGTITSAKVMLDENGKSRGF 378
Query: 267 GFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ P+ AT A+S MN + +KPL V L+ K
Sbjct: 379 GFVCLSTPEEATKAISEMNQRMVANKPLYVALAQPK 414
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 80/268 (29%), Positives = 121/268 (45%), Gaps = 24/268 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+P+V L F G++ +RV R+ S G+ + F++ A ++A E+
Sbjct: 54 LYVGELDPTVTESDLYEFFSPIGSVNSIRVCRDAVTKRSLGYGYVNFHSQAAGERALEEL 113
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N I + + + P R G +F+KNL ++ + L F FG
Sbjct: 114 NYAEIKGVRCRLMWSQRDPSLRRSGSG---------NIFIKNLDPAIENKTLHDTFSSFG 164
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
++ K+ DENG SKGFGF+ + S +AA+ AI +NG ++ +V G +
Sbjct: 165 KVLSCKVATDENGNSKGFGFVHYESDEAAQAAIENINGMLLNGREIYV-------GPHLA 217
Query: 216 PKVKPPLLQPARKN--KIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGF 268
K + Q KN +FV N + E ELF +G ITS L D K GF
Sbjct: 218 KKDRESRFQEMIKNYTNVFVKNFDTESTEDELRELFESYGPITSIHLQVDSEGHNKGFGF 277
Query: 269 IEFIMPKHATHAVSTMNGHVFKSKPLKV 296
+ F A AV +N +K KPL V
Sbjct: 278 VNFAEHDDAVKAVEALNDKEYKGKPLYV 305
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 53/88 (60%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L + NL+ S+D+ L EFK FGT+ +V ++N +SRGF + +TP EA KA
Sbjct: 333 YQSVNLFIKNLDESIDDARLEEEFKPFGTITSAKVMLDENGKSRGFGFVCLSTPEEATKA 392
Query: 92 RVEMNGHLIGSKPVIITFVELKPGQRSK 119
EMN ++ +KP+ + + K +RS+
Sbjct: 393 ISEMNQRMVANKPLYVALAQPKAIRRSQ 420
>gi|71993217|ref|NP_001021711.1| Protein PAB-1, isoform c [Caenorhabditis elegans]
gi|38422743|emb|CAE54917.1| Protein PAB-1, isoform c [Caenorhabditis elegans]
Length = 586
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 95/347 (27%), Positives = 156/347 (44%), Gaps = 72/347 (20%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVAR-NKNDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V+ L +F G + +RV R N S G+A + F PA+A++
Sbjct: 29 YTMASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAER 88
Query: 91 ARVEMNGHLIGSKPVIITFVELKPG--------------------------QRSKPVGPE 124
A MN + KP+ I + + P QR++ +G
Sbjct: 89 AMDTMNFEALHGKPMRIMWSQRDPAMRRSGAGNIFIKNLDKVFVGKFQPRAQRNRELGET 148
Query: 125 EKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAA 184
KQ+ V+VKN + ++E L+ F KFGNI +++ E GKSKGFGF+ F + + A
Sbjct: 149 AKQFTN--VYVKNFGDHYNKETLEKLFAKFGNITSCEVMTVE-GKSKGFGFVAFANPEEA 205
Query: 185 EKAIIEMNGRMIQHNSTFVSL----------AEIVPGKKVFPKVKPPLLQPARKNKIFVA 234
E A+ ++ I+ + + AE+ KK + K +Q + ++V
Sbjct: 206 ETAVQALHDSTIEGTDLKLHVCRAQKKSERHAEL---KKKHEQHKAERMQKYQGVNLYVK 262
Query: 235 NLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVF 289
NL +++ ++ F +G ITS+ +++D K GF+ F P+ AT AV+ MN +
Sbjct: 263 NLDETVDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEATSAVTEMNSKMV 322
Query: 290 KSKPLKVTLS------------------------GTKPGVSITNPTK 312
SKPL V ++ G PG ++ NPT+
Sbjct: 323 CSKPLYVAIAQRKEDRRAQLASQYMQRLASMRMHGNVPGAAMYNPTQ 369
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 101/196 (51%), Gaps = 11/196 (5%)
Query: 22 ARSNKENNKVYKE-NELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAII 80
A+ N+E + K+ ++V N + + L F KFG + V +S+GF +
Sbjct: 139 AQRNRELGETAKQFTNVYVKNFGDHYNKETLEKLFAKFGNITSCEVM-TVEGKSKGFGFV 197
Query: 81 VFNTPAEAKKARVEMNGHLI-GSKPVIITFVELKPGQRSKPVGPEEKQYKKDK------- 132
F P EA+ A ++ I G+ + K +R + + +Q+K ++
Sbjct: 198 AFANPEEAETAVQALHDSTIEGTDLKLHVCRAQKKSERHAELKKKHEQHKAERMQKYQGV 257
Query: 133 -VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEM 191
++VKNL ETVD++ LK F +GNI K++ DENG+SKGFGF+ F + A A+ EM
Sbjct: 258 NLYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEATSAVTEM 317
Query: 192 NGRMIQHNSTFVSLAE 207
N +M+ +V++A+
Sbjct: 318 NSKMVCSKPLYVAIAQ 333
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 52/93 (55%)
Query: 27 ENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPA 86
E + Y+ L+V NL+ +VD+ L +F+ +G + +V ++N S+GF + F P
Sbjct: 249 ERMQKYQGVNLYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPE 308
Query: 87 EAKKARVEMNGHLIGSKPVIITFVELKPGQRSK 119
EA A EMN ++ SKP+ + + K +R++
Sbjct: 309 EATSAVTEMNSKMVCSKPLYVAIAQRKEDRRAQ 341
>gi|324501709|gb|ADY40758.1| Polyadenylate-binding protein 1 [Ascaris suum]
Length = 595
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 80/273 (29%), Positives = 128/273 (46%), Gaps = 20/273 (7%)
Query: 33 KENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKA 91
K+ L+V +L P V+ L+ +F G + +RV R+ S G+A + F P +AK+A
Sbjct: 14 KKPSLYVGDLHPDVNETVLLEKFSNIGRVLSIRVCRDALTRRSLGYAYVNFERPEDAKQA 73
Query: 92 RVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHF 151
MN ++ +P+ I + + +P G VFVKNL +V+ + L + F
Sbjct: 74 LETMNFDIVHGRPIRIMWSQRRPSTSRVAAG---------NVFVKNLNGSVNSKALYNKF 124
Query: 152 IKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPG 211
FGNI+ K+ DE KSKG+GF+QF + +AA KAI NG + + +V +
Sbjct: 125 SVFGNIVSCKLAVDEQSKSKGYGFVQFETEEAARKAIDGTNGVIFEGKRIYVGRFQSRSE 184
Query: 212 KKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKH-----I 266
+ K +FV N ++ + ++LFA+FG I S ++ D
Sbjct: 185 RSEQAKRTTNCF-----TNVFVKNFADILDKEKLQQLFAKFGKIVSCAVSVDGDGKPNGF 239
Query: 267 GFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299
GF+ F P A AV M + K+ +S
Sbjct: 240 GFVAFENPDDAEKAVKDMQDYHLPGSDRKLYVS 272
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 78/281 (27%), Positives = 138/281 (49%), Gaps = 21/281 (7%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ V NL SV+++AL N+F FG + ++A ++ +S+G+ + F T A+KA N
Sbjct: 106 VFVKNLNGSVNSKALYNKFSVFGNIVSCKLAVDEQSKSKGYGFVQFETEEAARKAIDGTN 165
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G + K + + + + +RS+ + VFVKN + +D+E+L+ F KFG
Sbjct: 166 GVIFEGKRIYVGRFQSRS-ERSEQAKRTTNCFTN--VFVKNFADILDKEKLQQLFAKFGK 222
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMI--QHNSTFVS--------LA 206
I+ + D +GK GFGF+ F + AEKA+ +M + +VS LA
Sbjct: 223 IVSCAVSVDGDGKPNGFGFVAFENPDDAEKAVKDMQDYHLPGSDRKLYVSRFQKKCERLA 282
Query: 207 EIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLV-SD-- 263
E+ ++ + + A +++ NL I++ F +G + S+ ++ SD
Sbjct: 283 ELDRKYQLEKNERAKRYEGA---NLYLKNLDDAIDDDMLRRSFGEYGNVISAKVMRSDDG 339
Query: 264 --KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
K GF+ F P A A++ M G + +KPL V+++ K
Sbjct: 340 RSKGFGFVCFDKPDEAVKAMTAMKGKMVCTKPLYVSMAQRK 380
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 96/188 (51%), Gaps = 9/188 (4%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ V N +D + L F KFG + V+ + + + GF + F P +A+KA +M
Sbjct: 199 VFVKNFADILDKEKLQQLFAKFGKIVSCAVSVDGDGKPNGFGFVAFENPDDAEKAVKDMQ 258
Query: 97 G-HLIGSKPVIITFVELKPGQRSKPV--------GPEEKQYKKDKVFVKNLVETVDEEEL 147
HL GS + K +R + K+Y+ +++KNL + +D++ L
Sbjct: 259 DYHLPGSDRKLYVSRFQKKCERLAELDRKYQLEKNERAKRYEGANLYLKNLDDAIDDDML 318
Query: 148 KSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
+ F ++GN+I K++R ++G+SKGFGF+ F A KA+ M G+M+ +VS+A+
Sbjct: 319 RRSFGEYGNVISAKVMRSDDGRSKGFGFVCFDKPDEAVKAMTAMKGKMVCTKPLYVSMAQ 378
Query: 208 IVPGKKVF 215
+K F
Sbjct: 379 RKEDRKAF 386
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 52/92 (56%)
Query: 27 ENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPA 86
E K Y+ L++ NL+ ++D+ L F ++G + +V R+ + S+GF + F+ P
Sbjct: 294 ERAKRYEGANLYLKNLDDAIDDDMLRRSFGEYGNVISAKVMRSDDGRSKGFGFVCFDKPD 353
Query: 87 EAKKARVEMNGHLIGSKPVIITFVELKPGQRS 118
EA KA M G ++ +KP+ ++ + K +++
Sbjct: 354 EAVKAMTAMKGKMVCTKPLYVSMAQRKEDRKA 385
Score = 42.4 bits (98), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 44/87 (50%), Gaps = 6/87 (6%)
Query: 226 ARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGF--IEFIMPKHATH 279
A+K ++V +L ++N + E F+ G + S + D + +G+ + F P+ A
Sbjct: 13 AKKPSLYVGDLHPDVNETVLLEKFSNIGRVLSIRVCRDALTRRSLGYAYVNFERPEDAKQ 72
Query: 280 AVSTMNGHVFKSKPLKVTLSGTKPGVS 306
A+ TMN + +P+++ S +P S
Sbjct: 73 ALETMNFDIVHGRPIRIMWSQRRPSTS 99
>gi|225442420|ref|XP_002277538.1| PREDICTED: polyadenylate-binding protein, cytoplasmic and
nuclear-like [Vitis vinifera]
Length = 630
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 80/276 (28%), Positives = 150/276 (54%), Gaps = 17/276 (6%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L V NL+PS+++ +L + F KFG + +VA +N +S+ F + F++ A A +N
Sbjct: 119 LFVKNLDPSINSASLQDIFCKFGNILSCKVAE-ENGKSKCFGFVQFDSDDSATAALNALN 177
Query: 97 GHLIGSKPVIIT-FVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
++ K + ++ FV K +R + EE ++ V+VKNL E + E+ ++ F +FG
Sbjct: 178 DTMLDGKKLFVSKFV--KKCERKE--ASEETKFTN--VYVKNLGEDLTEDIIRDKFSEFG 231
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
+ V I++D NGKS+GFGF+ F S A+KA+ +NG M+ FV A+ ++
Sbjct: 232 KVGTVVIMKDGNGKSRGFGFVNFESPDEAKKAVEALNGAMLGSKKLFVGRAQKKAERQEL 291
Query: 216 PKVKPPLLQP----ARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS-----DKHI 266
K + ++ + + ++V NL +++++ + +E F+ G ITS+ ++ K
Sbjct: 292 LKHEKEMVNCNIGKEKASNLYVKNLDASVDDDKLQEHFSSCGQITSAKVMRHDSGLSKGF 351
Query: 267 GFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ F + A A++T+NG + + L + ++ K
Sbjct: 352 GFVCFSTSEEAQKALTTLNGTLLHGRSLYIAMAQRK 387
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 110/189 (58%), Gaps = 8/189 (4%)
Query: 26 KENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTP 85
KE ++ K ++V NL + + ++F +FG + V + ++ N +SRGF + F +P
Sbjct: 198 KEASEETKFTNVYVKNLGEDLTEDIIRDKFSEFGKVGTVVIMKDGNGKSRGFGFVNFESP 257
Query: 86 AEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQY-------KKDKVFVKNL 138
EAKKA +NG ++GSK + + + K +R + + E++ K ++VKNL
Sbjct: 258 DEAKKAVEALNGAMLGSKKLFVGRAQ-KKAERQELLKHEKEMVNCNIGKEKASNLYVKNL 316
Query: 139 VETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQH 198
+VD+++L+ HF G I K++R ++G SKGFGF+ F + + A+KA+ +NG ++
Sbjct: 317 DASVDDDKLQEHFSSCGQITSAKVMRHDSGLSKGFGFVCFSTSEEAQKALTTLNGTLLHG 376
Query: 199 NSTFVSLAE 207
S ++++A+
Sbjct: 377 RSLYIAMAQ 385
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 79/266 (29%), Positives = 127/266 (47%), Gaps = 23/266 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L+P V L++ F G L VR+ R+ + +S +A + F P++A KA +
Sbjct: 31 LYVGDLDPEVSEVELVDVFSGMGPLVSVRLCRDSLSGKSLCYAYVNFFHPSDASKALACL 90
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N + KP+ I + P R + +FVKNL +++ L+ F KFG
Sbjct: 91 NHTKLMGKPMRIMWSHRDPLPRKTGLA---------NLFVKNLDPSINSASLQDIFCKFG 141
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ +ENGKSK FGF+QF S +A A+ +N M+ FVS K V
Sbjct: 142 NILSCKVA-EENGKSKCFGFVQFDSDDSATAALNALNDTMLDGKKLFVS-------KFVK 193
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIE 270
+ + + ++V NL ++ + F+ FG + + ++ D + GF+
Sbjct: 194 KCERKEASEETKFTNVYVKNLGEDLTEDIIRDKFSEFGKVGTVVIMKDGNGKSRGFGFVN 253
Query: 271 FIMPKHATHAVSTMNGHVFKSKPLKV 296
F P A AV +NG + SK L V
Sbjct: 254 FESPDEAKKAVEALNGAMLGSKKLFV 279
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%)
Query: 33 KENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKAR 92
K + L+V NL+ SVD+ L F G + +V R+ + S+GF + F+T EA+KA
Sbjct: 307 KASNLYVKNLDASVDDDKLQEHFSSCGQITSAKVMRHDSGLSKGFGFVCFSTSEEAQKAL 366
Query: 93 VEMNGHLIGSKPVIITFVELK 113
+NG L+ + + I + K
Sbjct: 367 TTLNGTLLHGRSLYIAMAQRK 387
>gi|388854914|emb|CCF51417.1| probable PAB1-mRNA polyadenylate-binding protein [Ustilago hordei]
Length = 648
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 80/279 (28%), Positives = 140/279 (50%), Gaps = 14/279 (5%)
Query: 34 ENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARV 93
+ + + NL+ +DN+AL + F FG + +VA N S G+ + + T A+ A
Sbjct: 132 QGNIFIKNLDAGIDNKALHDTFAAFGNILSCKVATNDTG-SLGYGFVHYETAEAAEAAIK 190
Query: 94 EMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIK 153
+NG L+ K V + + +R + EE + K V+ KN+ V +E+ + F
Sbjct: 191 HVNGMLLNDKKVYVGH-HIPRKERQAKI--EESRAKFTNVYCKNVDPEVTDEQFEKLFTN 247
Query: 154 FGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPG-- 211
+G I + RD++GKSKGFGF+ F ++ A+KA+ E++ FV+ A+
Sbjct: 248 YGKITSCVLQRDDDGKSKGFGFVNFEDHEEAQKAVDELHDSDFHGQKLFVARAQKKSERE 307
Query: 212 ---KKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS-----D 263
++ + K L + +++ N+P + ++ E FA FGTITS ++
Sbjct: 308 EELRRSYEAAKNEKLAKFQGVNLYLKNIPESYDDERLREEFAPFGTITSCKIMRAPSGVS 367
Query: 264 KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
+ GF+ + +P+ A AVS MNG + ++PL V L+ K
Sbjct: 368 RGFGFVCYSVPEEANKAVSEMNGKMLDNRPLYVALAQRK 406
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 76/267 (28%), Positives = 127/267 (47%), Gaps = 21/267 (7%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+PSV L F G + +RV R+ S G+A + F A+ ++A ++
Sbjct: 47 LYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNFLNAADGERAMEQL 106
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI ++P I + + P R G +F+KNL +D + L F FG
Sbjct: 107 NYSLIRNRPCRIMWSQRDPALRRTGQG---------NIFIKNLDAGIDNKALHDTFAAFG 157
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ ++ G S G+GF+ + + +AAE AI +NG ++ +V +P K+
Sbjct: 158 NILSCKVATNDTG-SLGYGFVHYETAEAAEAAIKHVNGMLLNDKKVYV--GHHIPRKERQ 214
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIE 270
K++ A+ ++ N+ + + +FE+LF +G ITS L D K GF+
Sbjct: 215 AKIE---ESRAKFTNVYCKNVDPEVTDEQFEKLFTNYGKITSCVLQRDDDGKSKGFGFVN 271
Query: 271 FIMPKHATHAVSTMNGHVFKSKPLKVT 297
F + A AV ++ F + L V
Sbjct: 272 FEDHEEAQKAVDELHDSDFHGQKLFVA 298
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 48/83 (57%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L++ N+ S D++ L EF FGT+ ++ R + SRGF + ++ P EA KA EMN
Sbjct: 330 LYLKNIPESYDDERLREEFAPFGTITSCKIMRAPSGVSRGFGFVCYSVPEEANKAVSEMN 389
Query: 97 GHLIGSKPVIITFVELKPGQRSK 119
G ++ ++P+ + + K +R +
Sbjct: 390 GKMLDNRPLYVALAQRKDVRRQQ 412
>gi|340375830|ref|XP_003386437.1| PREDICTED: polyadenylate-binding protein 1-like [Amphimedon
queenslandica]
Length = 618
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 82/278 (29%), Positives = 141/278 (50%), Gaps = 22/278 (7%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+D++AL + F FG + +VA + N S+GF + F+ A A ++NG
Sbjct: 107 IKNLDKSIDHKALYDTFSAFGNILSCKVATDGNRHSKGFGFVHFDEQEAADLAIEKVNGK 166
Query: 99 LIGSKPVIIT-FVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNI 157
L+ V + F+ K RS G + VF+KN E + L F K+G+I
Sbjct: 167 LLNDMKVYVGKFIPRK--DRSHTNGFNQH---YTNVFIKNFGEDFTDTMLYDVFEKYGSI 221
Query: 158 IEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLA--------EIV 209
+ +++D G SKGFGF+ F S++AA A+ ++ ++ + A E++
Sbjct: 222 VSAVVMKDGEGLSKGFGFVSFESHEAASAAVQAVHNSIVNGRQVYCGRAQKKNERSRELM 281
Query: 210 PGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----K 264
K+ + + L + +++ NL + + + F++FG+ITS+ +++D K
Sbjct: 282 RRKE---EQRQERLSRYQGVNLYIKNLEDTLGEEKLKSEFSKFGSITSAKIMTDEFGHSK 338
Query: 265 HIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ F P+ AT AV+ MNG + SKPL V L+ K
Sbjct: 339 GFGFVCFSSPEEATKAVTEMNGRIVVSKPLYVALAQRK 376
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 75/262 (28%), Positives = 130/262 (49%), Gaps = 21/262 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L P V+ L +F K G + +RV R+ S G+A + F PA+A++A M
Sbjct: 17 LYVGDLLPDVNEAVLFEQFSKAGPVLSIRVCRDLITKRSLGYAYVNFQQPADAERALDTM 76
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N I +P I + + P R VG +F+KNL +++D + L F FG
Sbjct: 77 NYEPIKGQPCRIMWSQRDPSLRRSGVG---------NIFIKNLDKSIDHKALYDTFSAFG 127
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ D N SKGFGF+ F +AA+ AI ++NG+++ N V + + +P K
Sbjct: 128 NILSCKVATDGNRHSKGFGFVHFDEQEAADLAIEKVNGKLL--NDMKVYVGKFIPRKD-- 183
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIE 270
+ N +F+ N + ++ ++F ++G+I S+ ++ D K GF+
Sbjct: 184 -RSHTNGFNQHYTN-VFIKNFGEDFTDTMLYDVFEKYGSIVSAVVMKDGEGLSKGFGFVS 241
Query: 271 FIMPKHATHAVSTMNGHVFKSK 292
F + A+ AV ++ + +
Sbjct: 242 FESHEAASAAVQAVHNSIVNGR 263
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 50/82 (60%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L++ NLE ++ + L +EF KFG++ ++ ++ S+GF + F++P EA KA
Sbjct: 295 YQGVNLYIKNLEDTLGEEKLKSEFSKFGSITSAKIMTDEFGHSKGFGFVCFSSPEEATKA 354
Query: 92 RVEMNGHLIGSKPVIITFVELK 113
EMNG ++ SKP+ + + K
Sbjct: 355 VTEMNGRIVVSKPLYVALAQRK 376
>gi|296815242|ref|XP_002847958.1| polyadenylate-binding protein [Arthroderma otae CBS 113480]
gi|238840983|gb|EEQ30645.1| polyadenylate-binding protein [Arthroderma otae CBS 113480]
Length = 708
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 75/255 (29%), Positives = 123/255 (48%), Gaps = 25/255 (9%)
Query: 51 LINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITF 109
L F G + +RV R+ S G+A + +N A+ ++A ++N LI +P I +
Sbjct: 2 LYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGRPCRIMW 61
Query: 110 VELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGK 169
+ P R G VF+KNL +D + L F FGNI+ K+ +DE G
Sbjct: 62 SQRDPALRKTGQG---------NVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEYGN 112
Query: 170 SKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKN 229
SKG+GF+ + + +AA AI +NG ++ FV G + K + + + N
Sbjct: 113 SKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFV-------GHHIAKKDRQSKFEEMKAN 165
Query: 230 --KIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAV 281
I+V N+ ++ + EF LF ++G ITS++L D + GF+ F + A+ AV
Sbjct: 166 FTNIYVKNVEQDVTDEEFRALFEKYGDITSATLSRDNETGKSRGFGFVNFSDHEAASAAV 225
Query: 282 STMNGHVFKSKPLKV 296
+N + K + L V
Sbjct: 226 EGLNEYELKGQKLYV 240
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 127/231 (54%), Gaps = 9/231 (3%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ ++DN+AL + F FG + +VA+++ S+G+ + + T A A +NG
Sbjct: 78 IKNLDTAIDNKALHDTFAAFGNILSCKVAQDEYGNSKGYGFVHYETAEAATNAIKHVNGM 137
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ K V + K ++SK EE + ++VKN+ + V +EE ++ F K+G+I
Sbjct: 138 LLNEKKVFVGHHIAKKDRQSK---FEEMKANFTNIYVKNVEQDVTDEEFRALFEKYGDIT 194
Query: 159 EVKIVRD-ENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGK--KVF 215
+ RD E GKS+GFGF+ F ++AA A+ +N ++ +V A+ + ++
Sbjct: 195 SATLSRDNETGKSRGFGFVNFSDHEAASAAVEGLNEYELKGQKLYVGRAQKKHEREEELR 254
Query: 216 PKVKPPLLQPARKNK---IFVANLPSNINNSEFEELFARFGTITSSSLVSD 263
+ + ++ A K + +++ NL +I++ + ELF+ +G ITS+ ++ +
Sbjct: 255 KQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLRELFSSYGNITSAKVMRE 305
Score = 43.9 bits (102), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 27/40 (67%)
Query: 168 GKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
GKSKGFGF+ F + A KA+ EMN RM+ +V+LA+
Sbjct: 368 GKSKGFGFVCFSNPDEASKAVTEMNQRMVHGKPLYVALAQ 407
Score = 38.9 bits (89), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 27/46 (58%)
Query: 74 SRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSK 119
S+GF + F+ P EA KA EMN ++ KP+ + + K ++S+
Sbjct: 370 SKGFGFVCFSNPDEASKAVTEMNQRMVHGKPLYVALAQRKDVRKSQ 415
>gi|355709043|gb|AES03462.1| poly binding protein, cytoplasmic 1 [Mustela putorius furo]
Length = 230
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 79/244 (32%), Positives = 124/244 (50%), Gaps = 25/244 (10%)
Query: 51 LINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITF 109
L +F G + +RV R+ S G+A + F PA+A++A MN +I KPV I +
Sbjct: 1 LYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 60
Query: 110 VELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGK 169
+ P R VG +F+KNL +++D + L F FGNI+ K+V DENG
Sbjct: 61 SQRDPSLRKSGVG---------NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG- 110
Query: 170 SKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARK- 228
SKG+GF+ F + +AAE+AI +MNG ++ FV G+ K + L K
Sbjct: 111 SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV-------GRFKSRKEREAELGARAKE 163
Query: 229 -NKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVS 282
+++ N ++++ ++LF +FG S +++D K GF+ F + A AV
Sbjct: 164 FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 223
Query: 283 TMNG 286
MNG
Sbjct: 224 EMNG 227
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 58/158 (36%), Positives = 97/158 (61%), Gaps = 4/158 (2%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S+DN+AL + F FG + +V ++N S+G+ + F T A++A +MN
Sbjct: 75 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 133
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G L+ + V + + + +R +G K++ V++KN E +D+E LK F KFG
Sbjct: 134 GMLLNDRKVFVGRFKSRK-EREAELGARAKEFTN--VYIKNFGEDMDDERLKDLFGKFGP 190
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGR 194
+ VK++ DE+GKSKGFGF+ F ++ A+KA+ EMNG+
Sbjct: 191 ALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGK 228
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 71/157 (45%), Gaps = 20/157 (12%)
Query: 147 LKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL 205
L F G I+ +++ RD +S G+ ++ F AE+A+ MN
Sbjct: 1 LYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMN------------- 47
Query: 206 AEIVPGK--KVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD 263
+++ GK ++ + P L+ + IF+ NL +I+N + F+ FG I S +V D
Sbjct: 48 FDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD 107
Query: 264 ----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
K GF+ F + A A+ MNG + + + V
Sbjct: 108 ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 144
>gi|15228016|ref|NP_181204.1| poly(A) binding protein 7 [Arabidopsis thaliana]
gi|12229883|sp|Q9ZQA8.1|PABPX_ARATH RecName: Full=Probable polyadenylate-binding protein At2g36660;
Short=PABP; Short=Poly(A)-binding protein At2g36660
gi|4415911|gb|AAD20142.1| putative poly(A) binding protein [Arabidopsis thaliana]
gi|330254185|gb|AEC09279.1| poly(A) binding protein 7 [Arabidopsis thaliana]
Length = 609
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 89/308 (28%), Positives = 145/308 (47%), Gaps = 27/308 (8%)
Query: 5 GKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDV 64
GK++ W D AR N N + V NL SV N L + FKKFG +
Sbjct: 92 GKMIRVMWSVRAPD---ARRNGVGN-------VFVKNLPESVTNAVLQDMFKKFGNIVSC 141
Query: 65 RVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPE 124
+VA ++ +SRG+ + F A A +N ++ K + + K +++ V PE
Sbjct: 142 KVATLEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVG----KFMKKTDRVKPE 197
Query: 125 EKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAA 184
EK +++KNL V E+ L+ F +FG I+ + I +DEN +G+ F+ F + + A
Sbjct: 198 EKY---TNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDA 254
Query: 185 EKAIIEMNGRMIQHNSTFVSLAEIVPG-----KKVFPKVKPPLLQPARKNKIFVANLPSN 239
+A +NG +V A+ ++ F + A+ + I+V N+
Sbjct: 255 RRAAETVNGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVA 314
Query: 240 INNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
+ E + F++ GTITS+ L+ D K GF+ F P+ A AV T +G +F KPL
Sbjct: 315 VTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPL 374
Query: 295 KVTLSGTK 302
V ++ K
Sbjct: 375 YVAIAQKK 382
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 87/268 (32%), Positives = 130/268 (48%), Gaps = 28/268 (10%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKND-ESRGFAIIVFNTPAEAKKARVEM 95
L+V +L PSV L + F +F +L VR+ ++ + S + F + +A A +
Sbjct: 26 LYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEKK 85
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N L+ K + + + P R VG VFVKNL E+V L+ F KFG
Sbjct: 86 NNSLLNGKMIRVMWSVRAPDARRNGVG---------NVFVKNLPESVTNAVLQDMFKKFG 136
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGK--K 213
NI+ K+ E+GKS+G+GF+QF AA AI + NST V+ EI GK K
Sbjct: 137 NIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTL-------NSTIVADKEIYVGKFMK 189
Query: 214 VFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKH-----IGF 268
+VKP + +++ NL ++++ E FA FG I S ++ D++ F
Sbjct: 190 KTDRVKP----EEKYTNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAF 245
Query: 269 IEFIMPKHATHAVSTMNGHVFKSKPLKV 296
+ F P+ A A T+NG F SK L V
Sbjct: 246 VNFDNPEDARRAAETVNGTKFGSKCLYV 273
>gi|159462882|ref|XP_001689671.1| polyadenylate-binding protein RB47 [Chlamydomonas reinhardtii]
gi|158283659|gb|EDP09409.1| polyadenylate-binding protein RB47 [Chlamydomonas reinhardtii]
Length = 636
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 84/279 (30%), Positives = 133/279 (47%), Gaps = 29/279 (10%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ ++D +AL + F FG + +VA + N S+G+ + F A A +A +N
Sbjct: 118 IKNLDKTIDAKALHDTFSAFGKILSCKVATDANGVSKGYGFVHFEDQAAADRAIQTVNQK 177
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDK-----VFVKNLVETVDEEELKSHFIK 153
I K V VGP +K+ + + VFVKNL + ++EL +
Sbjct: 178 EIEGKIVY--------------VGPFQKRADRPQDVYTNVFVKNLPADIGDDELGKMATE 223
Query: 154 FGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKK 213
G I +++D+ G SKGFGFI F ++A K + +N R + + + A+ ++
Sbjct: 224 HGEITSAVVMKDDKGGSKGFGFINFKDAESAAKCVEYLNEREMSGKTLYAGRAQKKTERE 283
Query: 214 VFPKVKPPLLQPARKNK-----IFVANLPSNINNSEFEELFARFGTITSSSLVSD----- 263
+ K + R K ++V NL +++ ELFA GTITS ++ D
Sbjct: 284 AMLRQKAEESKQERYLKYQGMNLYVKNLSDEVDDDALRELFANSGTITSCKVMKDGSGKS 343
Query: 264 KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
K GF+ F AT AV+ MNG + K KPL V L+ K
Sbjct: 344 KGFGFVCFTSHDEATRAVTEMNGKMVKGKPLYVALAQRK 382
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 82/269 (30%), Positives = 126/269 (46%), Gaps = 29/269 (10%)
Query: 35 NELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNT---PAEAKK 90
+ L+V +LE V L F G + +RV R+ S G+A + +N+ P A +
Sbjct: 23 SSLYVGDLEKDVTEAQLFELFSSVGPVASIRVCRDAVTRRSLGYAYVNYNSALDPQAADR 82
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A +N H++ KP+ I + P R VG +F+KNL +T+D + L
Sbjct: 83 AMETLNYHVVNGKPMRIMWSHRDPSARKSGVG---------NIFIKNLDKTIDAKALHDT 133
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVP 210
F FG I+ K+ D NG SKG+GF+ F AA++AI +N + I+ +V P
Sbjct: 134 FSAFGKILSCKVATDANGVSKGYGFVHFEDQAAADRAIQTVNQKEIEGKIVYVG-----P 188
Query: 211 GKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KH 265
+K + P Q N +FV NLP++I + E ++ G ITS+ ++ D K
Sbjct: 189 FQK---RADRP--QDVYTN-VFVKNLPADIGDDELGKMATEHGEITSAVVMKDDKGGSKG 242
Query: 266 IGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
GFI F + A V +N K L
Sbjct: 243 FGFINFKDAESAAKCVEYLNEREMSGKTL 271
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 52/96 (54%)
Query: 24 SNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFN 83
S +E Y+ L+V NL VD+ AL F GT+ +V ++ + +S+GF + F
Sbjct: 293 SKQERYLKYQGMNLYVKNLSDEVDDDALRELFANSGTITSCKVMKDGSGKSKGFGFVCFT 352
Query: 84 TPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSK 119
+ EA +A EMNG ++ KP+ + + K +R++
Sbjct: 353 SHDEATRAVTEMNGKMVKGKPLYVALAQRKDVRRAQ 388
Score = 42.0 bits (97), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 42/92 (45%), Gaps = 9/92 (9%)
Query: 221 PLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDK---------HIGFIEF 271
P P + ++V +L ++ ++ ELF+ G + S + D ++ +
Sbjct: 15 PASTPLANSSLYVGDLEKDVTEAQLFELFSSVGPVASIRVCRDAVTRRSLGYAYVNYNSA 74
Query: 272 IMPKHATHAVSTMNGHVFKSKPLKVTLSGTKP 303
+ P+ A A+ T+N HV KP+++ S P
Sbjct: 75 LDPQAADRAMETLNYHVVNGKPMRIMWSHRDP 106
>gi|71018821|ref|XP_759641.1| hypothetical protein UM03494.1 [Ustilago maydis 521]
gi|74701642|sp|Q4P8R9.1|PABP_USTMA RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|46099399|gb|EAK84632.1| hypothetical protein UM03494.1 [Ustilago maydis 521]
Length = 651
Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 81/279 (29%), Positives = 139/279 (49%), Gaps = 14/279 (5%)
Query: 34 ENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARV 93
+ + + NL+ +DN+AL + F FG + +VA N+ S G+ + + T A+ A
Sbjct: 134 QGNIFIKNLDAGIDNKALHDTFAAFGNILSCKVATNETG-SLGYGFVHYETAEAAEAAIK 192
Query: 94 EMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIK 153
+NG L+ K V + + +R + EE + V+ KN+ V ++E + F K
Sbjct: 193 HVNGMLLNDKKVYVGH-HIPRKERQAKI--EETRANFTNVYAKNVDPEVTDDEFEKLFTK 249
Query: 154 FGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPG-- 211
FG I + RDE+GKSKGFGF+ F + A+KA+ E++ + FV+ A+
Sbjct: 250 FGKITSCVLQRDEDGKSKGFGFVNFEDHNEAQKAVDELHDSDFKGQKLFVARAQKKSERE 309
Query: 212 ---KKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS-----D 263
++ + K L + +++ N+P + ++ E FA FG ITS ++
Sbjct: 310 EELRRSYEAAKNEKLAKFQGVNLYLKNIPESYDDERLREEFAPFGAITSCKIMRAPSGVS 369
Query: 264 KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
+ GF+ + P+ A AVS MNG + ++PL V L+ K
Sbjct: 370 RGFGFVCYSAPEEANKAVSEMNGKMLDNRPLYVALAQRK 408
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 84/290 (28%), Positives = 133/290 (45%), Gaps = 25/290 (8%)
Query: 21 GARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAI 79
G + N L+V L+PSV L F GT+ +RV R+ S G+A
Sbjct: 33 GNGEQRNNADAANNTSLYVGELDPSVTEAMLFEIFSMIGTVASIRVCRDAVTRRSLGYAY 92
Query: 80 IVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLV 139
+ F A+ ++A ++N LI ++P I + + P R G +F+KNL
Sbjct: 93 VNFLNAADGERAMEQLNYSLIRNRPCRIMWSQRDPALRRTGQG---------NIFIKNLD 143
Query: 140 ETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHN 199
+D + L F FGNI+ K+ +E G S G+GF+ + + +AAE AI +NG ++
Sbjct: 144 AGIDNKALHDTFAAFGNILSCKVATNETG-SLGYGFVHYETAEAAEAAIKHVNGMLLNDK 202
Query: 200 STFVSLAEIVPGKKVFPKVKPPLLQPARKN--KIFVANLPSNINNSEFEELFARFGTITS 257
+V G + K + ++ R N ++ N+ + + EFE+LF +FG ITS
Sbjct: 203 KVYV-------GHHIPRKERQAKIEETRANFTNVYAKNVDPEVTDDEFEKLFTKFGKITS 255
Query: 258 SSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
L D K GF+ F A AV ++ FK + L V + K
Sbjct: 256 CVLQRDEDGKSKGFGFVNFEDHNEAQKAVDELHDSDFKGQKLFVARAQKK 305
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 47/83 (56%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L++ N+ S D++ L EF FG + ++ R + SRGF + ++ P EA KA EMN
Sbjct: 332 LYLKNIPESYDDERLREEFAPFGAITSCKIMRAPSGVSRGFGFVCYSAPEEANKAVSEMN 391
Query: 97 GHLIGSKPVIITFVELKPGQRSK 119
G ++ ++P+ + + K +R +
Sbjct: 392 GKMLDNRPLYVALAQRKDVRRQQ 414
>gi|429859146|gb|ELA33937.1| polyadenylate-binding protein [Colletotrichum gloeosporioides Nara
gc5]
Length = 688
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 90/353 (25%), Positives = 157/353 (44%), Gaps = 67/353 (18%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KG+ W + D R + N + + NL+ ++DN+AL + F FG +
Sbjct: 101 KGRPCRIMWSQ---RDPALRKTGQGN-------VFIKNLDVAIDNKALHDTFAAFGNILS 150
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+VA+++N S+G+ + + T A +A +NG L+ K V + K ++SK
Sbjct: 151 CKVAQDENGNSKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKF--- 207
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
EE + V+VKN+ V ++E + F FG++ + RD+ GKS+GFGF+ F +++A
Sbjct: 208 EEMKANFTNVYVKNIANEVTDDEFRDLFAAFGDVTSSSLARDQEGKSRGFGFVNFTTHEA 267
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAEIVPGK--KVFPKVKPPLLQPARKNK---IFVANLPS 238
A KA+ ++N + + +V A+ + ++ + L+ A K + +++ NL
Sbjct: 268 AAKAVEDLNNKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLDD 327
Query: 239 NINNSEFEELFARFGTITSSSLVSD----------------------------------- 263
+++ + LFA FG ITS+ ++ D
Sbjct: 328 EVDDEKLRTLFADFGPITSAKVMRDTPTDSKEDEEGSSEEKEKENKPEAEEKTEEKEGSE 387
Query: 264 --------------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
K GF+ F P AT AV+ MN + KPL V L+ K
Sbjct: 388 KKEKKSDKKLHGKSKGFGFVCFSNPDDATKAVAEMNQRMVHGKPLYVALAQRK 440
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 79/268 (29%), Positives = 122/268 (45%), Gaps = 50/268 (18%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L+V L+PSV L F + G++ +R A E+N
Sbjct: 62 LYVGELDPSVTEAMLFELFSQIGSVASIR-------------------------ALEELN 96
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
LI +P I + + P R G VF+KNL +D + L F FGN
Sbjct: 97 YTLIKGRPCRIMWSQRDPALRKTGQG---------NVFIKNLDVAIDNKALHDTFAAFGN 147
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKV-- 214
I+ K+ +DENG SKG+GF+ + + +AA +AI +NG ++ +V +P K
Sbjct: 148 ILSCKVAQDENGNSKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYV--GHHIPKKDRQS 205
Query: 215 -FPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKH-----IGF 268
F ++K A ++V N+ + + + EF +LFA FG +TSSSL D+ GF
Sbjct: 206 KFEEMK------ANFTNVYVKNIANEVTDDEFRDLFAAFGDVTSSSLARDQEGKSRGFGF 259
Query: 269 IEFIMPKHATHAVSTMNGHVFKSKPLKV 296
+ F + A AV +N F+ + L V
Sbjct: 260 VNFTTHEAAAKAVEDLNNKDFRGQDLYV 287
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 55/144 (38%), Gaps = 46/144 (31%)
Query: 20 EGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK--------- 70
E AR K N Y+ L++ NL+ VD++ L F FG + +V R+
Sbjct: 305 EAARLEKANK--YQGVNLYIKNLDDEVDDEKLRTLFADFGPITSAKVMRDTPTDSKEDEE 362
Query: 71 -----------------------------------NDESRGFAIIVFNTPAEAKKARVEM 95
+ +S+GF + F+ P +A KA EM
Sbjct: 363 GSSEEKEKENKPEAEEKTEEKEGSEKKEKKSDKKLHGKSKGFGFVCFSNPDDATKAVAEM 422
Query: 96 NGHLIGSKPVIITFVELKPGQRSK 119
N ++ KP+ + + K ++S+
Sbjct: 423 NQRMVHGKPLYVALAQRKDVRKSQ 446
>gi|297743165|emb|CBI36032.3| unnamed protein product [Vitis vinifera]
Length = 476
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 80/276 (28%), Positives = 150/276 (54%), Gaps = 17/276 (6%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L V NL+PS+++ +L + F KFG + +VA +N +S+ F + F++ A A +N
Sbjct: 119 LFVKNLDPSINSASLQDIFCKFGNILSCKVAE-ENGKSKCFGFVQFDSDDSATAALNALN 177
Query: 97 GHLIGSKPVIIT-FVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
++ K + ++ FV K +R + EE ++ V+VKNL E + E+ ++ F +FG
Sbjct: 178 DTMLDGKKLFVSKFV--KKCERKE--ASEETKFTN--VYVKNLGEDLTEDIIRDKFSEFG 231
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
+ V I++D NGKS+GFGF+ F S A+KA+ +NG M+ FV A+ ++
Sbjct: 232 KVGTVVIMKDGNGKSRGFGFVNFESPDEAKKAVEALNGAMLGSKKLFVGRAQKKAERQEL 291
Query: 216 PKVKPPLLQP----ARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS-----DKHI 266
K + ++ + + ++V NL +++++ + +E F+ G ITS+ ++ K
Sbjct: 292 LKHEKEMVNCNIGKEKASNLYVKNLDASVDDDKLQEHFSSCGQITSAKVMRHDSGLSKGF 351
Query: 267 GFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ F + A A++T+NG + + L + ++ K
Sbjct: 352 GFVCFSTSEEAQKALTTLNGTLLHGRSLYIAMAQRK 387
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 110/189 (58%), Gaps = 8/189 (4%)
Query: 26 KENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTP 85
KE ++ K ++V NL + + ++F +FG + V + ++ N +SRGF + F +P
Sbjct: 198 KEASEETKFTNVYVKNLGEDLTEDIIRDKFSEFGKVGTVVIMKDGNGKSRGFGFVNFESP 257
Query: 86 AEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQY-------KKDKVFVKNL 138
EAKKA +NG ++GSK + + + K +R + + E++ K ++VKNL
Sbjct: 258 DEAKKAVEALNGAMLGSKKLFVGRAQ-KKAERQELLKHEKEMVNCNIGKEKASNLYVKNL 316
Query: 139 VETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQH 198
+VD+++L+ HF G I K++R ++G SKGFGF+ F + + A+KA+ +NG ++
Sbjct: 317 DASVDDDKLQEHFSSCGQITSAKVMRHDSGLSKGFGFVCFSTSEEAQKALTTLNGTLLHG 376
Query: 199 NSTFVSLAE 207
S ++++A+
Sbjct: 377 RSLYIAMAQ 385
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 79/266 (29%), Positives = 127/266 (47%), Gaps = 23/266 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L+P V L++ F G L VR+ R+ + +S +A + F P++A KA +
Sbjct: 31 LYVGDLDPEVSEVELVDVFSGMGPLVSVRLCRDSLSGKSLCYAYVNFFHPSDASKALACL 90
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N + KP+ I + P R + +FVKNL +++ L+ F KFG
Sbjct: 91 NHTKLMGKPMRIMWSHRDPLPRKTGLA---------NLFVKNLDPSINSASLQDIFCKFG 141
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ +ENGKSK FGF+QF S +A A+ +N M+ FVS K V
Sbjct: 142 NILSCKVA-EENGKSKCFGFVQFDSDDSATAALNALNDTMLDGKKLFVS-------KFVK 193
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIE 270
+ + + ++V NL ++ + F+ FG + + ++ D + GF+
Sbjct: 194 KCERKEASEETKFTNVYVKNLGEDLTEDIIRDKFSEFGKVGTVVIMKDGNGKSRGFGFVN 253
Query: 271 FIMPKHATHAVSTMNGHVFKSKPLKV 296
F P A AV +NG + SK L V
Sbjct: 254 FESPDEAKKAVEALNGAMLGSKKLFV 279
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%)
Query: 33 KENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKAR 92
K + L+V NL+ SVD+ L F G + +V R+ + S+GF + F+T EA+KA
Sbjct: 307 KASNLYVKNLDASVDDDKLQEHFSSCGQITSAKVMRHDSGLSKGFGFVCFSTSEEAQKAL 366
Query: 93 VEMNGHLIGSKPVIITFVELK 113
+NG L+ + + I + K
Sbjct: 367 TTLNGTLLHGRSLYIAMAQRK 387
>gi|302844953|ref|XP_002954016.1| hypothetical protein VOLCADRAFT_82578 [Volvox carteri f.
nagariensis]
gi|300260828|gb|EFJ45045.1| hypothetical protein VOLCADRAFT_82578 [Volvox carteri f.
nagariensis]
Length = 620
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 91/315 (28%), Positives = 141/315 (44%), Gaps = 41/315 (13%)
Query: 5 GKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDV 64
GK + W D AR + N + + NL+ S+D +AL + F FG +
Sbjct: 92 GKPMRIMWSH---RDPSARKSGVGN-------IFIKNLDKSIDAKALHDTFSAFGKILSC 141
Query: 65 RVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPE 124
+VA + N S+G+ + F A A +A +N I K V VGP
Sbjct: 142 KVATDANGVSKGYGFVHFEDQAAADRAIQTVNQKEIEGKIVY--------------VGPF 187
Query: 125 EKQYKKDK-------VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQ 177
+K+ + + VFVKNL + ++EL +FG + +++DE G SKGFGFI
Sbjct: 188 QKRADRPQGKDVYTNVFVKNLPAELGDDELSKMATEFGEVTSAVVMKDEKGSSKGFGFIN 247
Query: 178 FFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNK-----IF 232
F + A K + +N + I + A+ ++ + K + R K ++
Sbjct: 248 FKDAECAAKCVEALNDKEIGGKVLYAGRAQKKTEREAMLRQKVEESKQERYLKYQGMNLY 307
Query: 233 VANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGH 287
V NL +++ +LF GTITS ++ D K GF+ F AT AV+ MNG
Sbjct: 308 VKNLADEVDDDALRDLFTSCGTITSCKVMKDTSGKSKGFGFVCFTSHDEATRAVTEMNGK 367
Query: 288 VFKSKPLKVTLSGTK 302
+ K KPL V L+ K
Sbjct: 368 MVKGKPLYVALAQRK 382
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/264 (29%), Positives = 124/264 (46%), Gaps = 35/264 (13%)
Query: 35 NELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNT---PAEAKK 90
+ L+V +LE V L F G + +RV R+ S G+A + +N+ P A++
Sbjct: 21 SSLYVGDLEKDVTEAQLFELFSSVGPVASIRVCRDAVTRRSLGYAYVNYNSALDPQAAER 80
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A +N H++ KP+ I + P R VG +F+KNL +++D + L
Sbjct: 81 AMETLNYHVLNGKPMRIMWSHRDPSARKSGVG---------NIFIKNLDKSIDAKALHDT 131
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVS----LA 206
F FG I+ K+ D NG SKG+GF+ F AA++AI +N + I+ +V A
Sbjct: 132 FSAFGKILSCKVATDANGVSKGYGFVHFEDQAAADRAIQTVNQKEIEGKIVYVGPFQKRA 191
Query: 207 EIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD--- 263
+ GK V+ +FV NLP+ + + E ++ FG +TS+ ++ D
Sbjct: 192 DRPQGKDVY-------------TNVFVKNLPAELGDDELSKMATEFGEVTSAVVMKDEKG 238
Query: 264 --KHIGFIEFIMPKHATHAVSTMN 285
K GFI F + A V +N
Sbjct: 239 SSKGFGFINFKDAECAAKCVEALN 262
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 53/96 (55%)
Query: 24 SNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFN 83
S +E Y+ L+V NL VD+ AL + F GT+ +V ++ + +S+GF + F
Sbjct: 293 SKQERYLKYQGMNLYVKNLADEVDDDALRDLFTSCGTITSCKVMKDTSGKSKGFGFVCFT 352
Query: 84 TPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSK 119
+ EA +A EMNG ++ KP+ + + K +R++
Sbjct: 353 SHDEATRAVTEMNGKMVKGKPLYVALAQRKDVRRAQ 388
Score = 42.0 bits (97), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 41/88 (46%), Gaps = 9/88 (10%)
Query: 225 PARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDK---------HIGFIEFIMPK 275
P + ++V +L ++ ++ ELF+ G + S + D ++ + + P+
Sbjct: 17 PLTNSSLYVGDLEKDVTEAQLFELFSSVGPVASIRVCRDAVTRRSLGYAYVNYNSALDPQ 76
Query: 276 HATHAVSTMNGHVFKSKPLKVTLSGTKP 303
A A+ T+N HV KP+++ S P
Sbjct: 77 AAERAMETLNYHVLNGKPMRIMWSHRDP 104
>gi|399217460|emb|CCF74347.1| unnamed protein product [Babesia microti strain RI]
Length = 679
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 87/293 (29%), Positives = 144/293 (49%), Gaps = 39/293 (13%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ N++ S+D +AL + F +G + +VA ++ SRG+ + F+T A A +A + NG
Sbjct: 133 IKNIDESIDTKALYDAFSPYGQILSCKVATDETGRSRGYGFVHFDTEANATRAISDANGM 192
Query: 99 LIGSKPVIIT-FVELKPGQRSKPVGPEEKQYKKDK----VFVKNLVETVDEEELKSHFIK 153
+G+K + + FV +RS+ V + + D+ ++V+N E +EE LK +F
Sbjct: 193 QLGNKKIFVAPFV-----RRSERVSSTKLEDGVDEKFTNLYVRNFPENWNEEILKENFSP 247
Query: 154 FGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGR----------MIQHNST-- 201
FG I + + D G+ F FI + A+ AI MNG+ I+ T
Sbjct: 248 FGEITSMMMKSDPLGRK--FAFINYAENSMAKAAIETMNGKDFSIKSGDKSTIEGEDTDK 305
Query: 202 -----FVSLAEIVPGKKVFPKVKPPLLQPARKNK-----IFVANLPSNINNSEFEELFAR 251
V + + K K + K+K +++ NL +IN++E ELF
Sbjct: 306 SETKLLVCAHQDRARRHAMLKAKYDSMHAENKSKYQGVNLYIKNLDDSINDAELRELFEG 365
Query: 252 FGTITSSSLVSDKH-----IGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299
FG ITS ++ D+H GF+ F+ P+ ATHAVS M+ + +KPL V L+
Sbjct: 366 FGLITSCKVMVDEHGASLGFGFVCFVSPEDATHAVSEMHLKLVHNKPLYVGLA 418
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 87/319 (27%), Positives = 142/319 (44%), Gaps = 30/319 (9%)
Query: 25 NKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFN 83
N +++ L+V +L P V L F G + +RV R+ +S G+A + ++
Sbjct: 31 NGNEGQLFPSASLYVGDLSPEVTEAILYEIFNTIGPVASIRVCRDSITRKSLGYAYVNYH 90
Query: 84 TPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVD 143
+A++A + + I K V I + P R G VF+KN+ E++D
Sbjct: 91 NVNDARRALEALKYNEICGKQVRIMWSHRDPSLRKSGAG---------NVFIKNIDESID 141
Query: 144 EEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFV 203
+ L F +G I+ K+ DE G+S+G+GF+ F + A +AI + NG + + FV
Sbjct: 142 TKALYDAFSPYGQILSCKVATDETGRSRGYGFVHFDTEANATRAISDANGMQLGNKKIFV 201
Query: 204 SLAEIVPGKKVFPKVKPPLLQPARKNK---IFVANLPSNINNSEFEELFARFGTITSSSL 260
+ P + +V L+ K ++V N P N N +E F+ FG ITS +
Sbjct: 202 A-----PFVRRSERVSSTKLEDGVDEKFTNLYVRNFPENWNEEILKENFSPFGEITSMMM 256
Query: 261 VSD---KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKPGVSITNPTKAPKK- 316
SD + FI + A A+ TMNG F K SG K + + K+ K
Sbjct: 257 KSDPLGRKFAFINYAENSMAKAAIETMNGKDFSIK------SGDKSTIEGEDTDKSETKL 310
Query: 317 --PAYIDEVKNVIGIKVQY 333
A+ D + +K +Y
Sbjct: 311 LVCAHQDRARRHAMLKAKY 329
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 52/81 (64%)
Query: 127 QYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEK 186
+Y+ +++KNL +++++ EL+ F FG I K++ DE+G S GFGF+ F S + A
Sbjct: 339 KYQGVNLYIKNLDDSINDAELRELFEGFGLITSCKVMVDEHGASLGFGFVCFVSPEDATH 398
Query: 187 AIIEMNGRMIQHNSTFVSLAE 207
A+ EM+ +++ + +V LAE
Sbjct: 399 AVSEMHLKLVHNKPLYVGLAE 419
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 46/85 (54%)
Query: 27 ENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPA 86
EN Y+ L++ NL+ S+++ L F+ FG + +V +++ S GF + F +P
Sbjct: 335 ENKSKYQGVNLYIKNLDDSINDAELRELFEGFGLITSCKVMVDEHGASLGFGFVCFVSPE 394
Query: 87 EAKKARVEMNGHLIGSKPVIITFVE 111
+A A EM+ L+ +KP+ + E
Sbjct: 395 DATHAVSEMHLKLVHNKPLYVGLAE 419
>gi|242041385|ref|XP_002468087.1| hypothetical protein SORBIDRAFT_01g039310 [Sorghum bicolor]
gi|241921941|gb|EER95085.1| hypothetical protein SORBIDRAFT_01g039310 [Sorghum bicolor]
Length = 654
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/271 (28%), Positives = 144/271 (53%), Gaps = 18/271 (6%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
V NL SVDN +L F KFG + +VA+N++ SRG+ + F + A +A +NG
Sbjct: 134 VKNLNNSVDNASLQELFSKFGDVLSCKVAKNEDGTSRGYGFVQFASQESADEAIGNLNGS 193
Query: 99 LIGSKPV-IITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNI 157
L + + + TF+ K +RS K +++K+L + + EE +K F +FG I
Sbjct: 194 LFNDRKLHVATFI--KKSERSA-----NNDDKFTNLYMKHLDDDITEELVKLKFSQFGPI 246
Query: 158 IEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPK 217
+ VKI+R +G S GFGF+ F + ++A KA M+G ++ + +V+ A+ +K + +
Sbjct: 247 VSVKIMRRPDGSSLGFGFVSFQNPESAIKAQETMHGMLLGSKALYVARAQKKEERKQYLQ 306
Query: 218 V-----KPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIG 267
+ ++ + ++ +++ N+ +++ FA +G ITS+ ++ D + G
Sbjct: 307 RLHEEKRNEIITKSNESNVYIKNIHDEVDDDALRARFAEYGNITSAKVMRDDKGISRGFG 366
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKVTL 298
F+ + P+ A V++M G +F KPL V +
Sbjct: 367 FVCYSTPEEAKSVVNSMRGVMFFGKPLYVAI 397
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 82/280 (29%), Positives = 135/280 (48%), Gaps = 39/280 (13%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVAR-NKNDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L V + L + F K GT+ VRV R N S + + + + A+A A ++
Sbjct: 44 LYVGDLHEDVAEEHLFDAFSKIGTVTSVRVCRDNATSRSLRYGYVNYFSRADAVMALDKL 103
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N L+ KP+ + + P R VG +FVKNL +VD L+ F KFG
Sbjct: 104 NHSLVLDKPIRVMWSNRDPDARRSGVG---------NIFVKNLNNSVDNASLQELFSKFG 154
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQ----HNSTFVSLAEIVPG 211
+++ K+ ++E+G S+G+GF+QF S ++A++AI +NG + H +TF+ +E
Sbjct: 155 DVLSCKVAKNEDGTSRGYGFVQFASQESADEAIGNLNGSLFNDRKLHVATFIKKSE---- 210
Query: 212 KKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEEL----FARFGTITSSSLV-----S 262
+ A + F ++++ EEL F++FG I S ++ S
Sbjct: 211 ------------RSANNDDKFTNLYMKHLDDDITEELVKLKFSQFGPIVSVKIMRRPDGS 258
Query: 263 DKHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ F P+ A A TM+G + SK L V + K
Sbjct: 259 SLGFGFVSFQNPESAIKAQETMHGMLLGSKALYVARAQKK 298
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 99/199 (49%), Gaps = 25/199 (12%)
Query: 23 RSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVF 82
+S + N K L++ +L+ + + + +F +FG + V++ R + S GF + F
Sbjct: 208 KSERSANNDDKFTNLYMKHLDDDITEELVKLKFSQFGPIVSVKIMRRPDGSSLGFGFVSF 267
Query: 83 NTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQY-------------- 128
P A KA+ M+G L+GSK + + + K E KQY
Sbjct: 268 QNPESAIKAQETMHGMLLGSKALYVARAQKKE---------ERKQYLQRLHEEKRNEIIT 318
Query: 129 --KKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEK 186
+ V++KN+ + VD++ L++ F ++GNI K++RD+ G S+GFGF+ + + + A+
Sbjct: 319 KSNESNVYIKNIHDEVDDDALRARFAEYGNITSAKVMRDDKGISRGFGFVCYSTPEEAKS 378
Query: 187 AIIEMNGRMIQHNSTFVSL 205
+ M G M +V++
Sbjct: 379 VVNSMRGVMFFGKPLYVAI 397
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 2/96 (2%)
Query: 26 KENNKVYKENE--LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFN 83
K N + K NE +++ N+ VD+ AL F ++G + +V R+ SRGF + ++
Sbjct: 312 KRNEIITKSNESNVYIKNIHDEVDDDALRARFAEYGNITSAKVMRDDKGISRGFGFVCYS 371
Query: 84 TPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSK 119
TP EAK M G + KP+ + + K +R+K
Sbjct: 372 TPEEAKSVVNSMRGVMFFGKPLYVAIFQRKEERRAK 407
>gi|293337013|ref|NP_001169661.1| uncharacterized protein LOC100383542 [Zea mays]
gi|224030689|gb|ACN34420.1| unknown [Zea mays]
Length = 442
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 84/283 (29%), Positives = 136/283 (48%), Gaps = 34/283 (12%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L V NLEP++D++ L F FG + +VA + +S+G+ + + T A+ A +N
Sbjct: 92 LFVKNLEPNIDSKNLYEIFSSFGAILSCKVATDSAGQSKGYGFVQYETEESAEAAINGLN 151
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G L ++ + FV L +R + V K V++KNL E++L+ F FG
Sbjct: 152 GMLANNRKM---FVGLHMRRRDREV-------KFTNVYIKNLPTEFSEDDLRQEFAPFGE 201
Query: 157 IIEVKIVRDENGKSKGFGFIQF----FSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGK 212
I ++RD +G SK FGF+ F F+ +A EKA NG+ I + +V A+ +
Sbjct: 202 ITSAVVMRDADGASKCFGFVNFKKPEFAIEAVEKA----NGKAIGDKTLYVGRAQKKEER 257
Query: 213 KVFPKVKPPLLQPARKNKI--------FVANLPSNINNSEFEELFARFGTITSSSLVSD- 263
K K + R NK+ ++ N+ IN+ ++LF FG + S ++ D
Sbjct: 258 KAELKTR---FGRGRDNKVDKPNGINLYLKNIDDGINDEGLKKLFEEFGQVASCKVMVDA 314
Query: 264 ----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
K GF+ F + A++ MNG + KPL V L+ K
Sbjct: 315 RGRSKGSGFVSFATAEAGQRAINRMNGRIVGKKPLYVGLAQPK 357
Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 76/266 (28%), Positives = 125/266 (46%), Gaps = 27/266 (10%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L +VD L F + + VRV R+ + S G+ + F + EA +A +
Sbjct: 4 LYVGDLAETVDEPQLHALFSQVAPVATVRVCRDILSGVSLGYGYVNFYSRQEATRALEAL 63
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N P+I ++ + R P ++ + +FVKNL +D + L F FG
Sbjct: 64 N-----FTPLIGKYIRVMFSNRD----PSLRKSGRANLFVKNLEPNIDSKNLYEIFSSFG 114
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
I+ K+ D G+SKG+GF+Q+ + ++AE AI +NG + + FV L ++V
Sbjct: 115 AILSCKVATDSAGQSKGYGFVQYETEESAEAAINGLNGMLANNRKMFVGLHMRRRDREV- 173
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIE 270
+ +++ NLP+ + + + FA FG ITS+ ++ D K GF+
Sbjct: 174 -----------KFTNVYIKNLPTEFSEDDLRQEFAPFGEITSAVVMRDADGASKCFGFVN 222
Query: 271 FIMPKHATHAVSTMNGHVFKSKPLKV 296
F P+ A AV NG K L V
Sbjct: 223 FKKPEFAIEAVEKANGKAIGDKTLYV 248
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 95/189 (50%), Gaps = 7/189 (3%)
Query: 26 KENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTP 85
+ ++ K +++ NL L EF FG + V R+ + S+ F + F P
Sbjct: 167 RRRDREVKFTNVYIKNLPTEFSEDDLRQEFAPFGEITSAVVMRDADGASKCFGFVNFKKP 226
Query: 86 AEAKKARVEMNGHLIGSKPVIITFVELKPGQRS--KPVGPEEKQYKKDK-----VFVKNL 138
A +A + NG IG K + + + K +++ K + K DK +++KN+
Sbjct: 227 EFAIEAVEKANGKAIGDKTLYVGRAQKKEERKAELKTRFGRGRDNKVDKPNGINLYLKNI 286
Query: 139 VETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQH 198
+ +++E LK F +FG + K++ D G+SKG GF+ F + +A ++AI MNGR++
Sbjct: 287 DDGINDEGLKKLFEEFGQVASCKVMVDARGRSKGSGFVSFATAEAGQRAINRMNGRIVGK 346
Query: 199 NSTFVSLAE 207
+V LA+
Sbjct: 347 KPLYVGLAQ 355
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 28 NNKVYKEN--ELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTP 85
+NKV K N L++ N++ ++++ L F++FG + +V + S+G + F T
Sbjct: 270 DNKVDKPNGINLYLKNIDDGINDEGLKKLFEEFGQVASCKVMVDARGRSKGSGFVSFATA 329
Query: 86 AEAKKARVEMNGHLIGSKPVIITFVELK 113
++A MNG ++G KP+ + + K
Sbjct: 330 EAGQRAINRMNGRIVGKKPLYVGLAQPK 357
>gi|218195846|gb|EEC78273.1| hypothetical protein OsI_17967 [Oryza sativa Indica Group]
Length = 1001
Score = 116 bits (291), Expect = 1e-23, Method: Composition-based stats.
Identities = 83/283 (29%), Positives = 141/283 (49%), Gaps = 13/283 (4%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V NL SV + LI F FG + RV + S+G+ + ++ P A +A M
Sbjct: 299 LYVGNLPASVGSHKLIELFLPFGQIVRSRVVDDCFTGLSQGYGFVKYSDPRCASEAIKRM 358
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
NG L+ + + + P P K+ K++V NL +++ + L F+ FG
Sbjct: 359 NGRLVEGRALEVRVAGF-PSSEDNSQQPS-KETDMAKLYVCNLSLSMNTDRLIHLFLPFG 416
Query: 156 NIIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEI---VPG 211
+ K+ +D G SKG+GF+Q+ S A +A+I +NGR++ V ++ I +P
Sbjct: 417 EVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIHLNGRLVDGRKIEVRVSGIPSTLPN 476
Query: 212 KKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KH 265
V ++ + ++V N+PS+I+ + ELF FG IT + +V+D K
Sbjct: 477 SAVESPSTTRTVKEIDMSNLYVCNMPSSIDTKKLVELFLPFGKITHARVVADPDTFSAKG 536
Query: 266 IGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKPGVSIT 308
GFI+F + AT A++ MNG + + + V ++G P SI+
Sbjct: 537 YGFIKFTDSESATKAIAAMNGALVGGEMIIVRVAGLSPSASIS 579
Score = 87.0 bits (214), Expect = 1e-14, Method: Composition-based stats.
Identities = 61/267 (22%), Positives = 121/267 (45%), Gaps = 11/267 (4%)
Query: 35 NELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKND-ESRGFAIIVFNTPAEAKKARV 93
+ L+V N+ S+D + L+ F FG + RV + + ++G+ I F A KA
Sbjct: 494 SNLYVCNMPSSIDTKKLVELFLPFGKITHARVVADPDTFSAKGYGFIKFTDSESATKAIA 553
Query: 94 EMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIK 153
MNG L+G + +I+ L P V + K ++++ NL ++ +++ + F
Sbjct: 554 AMNGALVGGEMIIVRVAGLSPSASISAV-QTTQDINKSRLYITNLPRSMTADKMVNLFAP 612
Query: 154 FGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKK 213
FG I +V + + + + + +A KA+ M+G M++ V +E+
Sbjct: 613 FGQITKVLMNLE-------YSLVWYADAPSAIKAVQHMDGYMVEGKRLVVKRSELCTTNA 665
Query: 214 VFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKHIGFIEFIM 273
KP ++ ++V +PS++ +F +LF FG + + + + G + F
Sbjct: 666 SQAGGKP--IKEIDMANLYVGRVPSSLTEDQFIDLFRPFGRVVQARMFRFQRYGMVRFDN 723
Query: 274 PKHATHAVSTMNGHVFKSKPLKVTLSG 300
P A A+ ++G+ L V ++G
Sbjct: 724 PSCAAAAIDHLDGYQIGGSILAVRVAG 750
Score = 73.6 bits (179), Expect = 1e-10, Method: Composition-based stats.
Identities = 67/311 (21%), Positives = 135/311 (43%), Gaps = 23/311 (7%)
Query: 34 ENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARV 93
++ L++ NL S+ ++N F FG + V + N E ++++ + A KA
Sbjct: 589 KSRLYITNLPRSMTADKMVNLFAPFGQITKVLM----NLE---YSLVWYADAPSAIKAVQ 641
Query: 94 EMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIK 153
M+G+++ K +++ EL S+ G K+ ++V + ++ E++ F
Sbjct: 642 HMDGYMVEGKRLVVKRSELCTTNASQAGGKPIKEIDMANLYVGRVPSSLTEDQFIDLFRP 701
Query: 154 FGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKK 213
FG +++ ++ R + +G ++F + A AI ++G I + V +A +
Sbjct: 702 FGRVVQARMFRFQR-----YGMVRFDNPSCAAAAIDHLDGYQIGGSILAVRVAGLPAESN 756
Query: 214 VFPKVKPPLLQPARKNKI-----FVANLPSNINNSEFEELFARFGTITSSSLVSDKH--- 265
+ + +I +V++LPS +NN +LF G IT + +V +++
Sbjct: 757 AAKGALTSQMSSNEQGQIDMTNLYVSHLPSYVNNERLIDLFLPCGQITQAKVVVERYTGV 816
Query: 266 ---IGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKPGVSITNPTKAPKKPAYIDE 322
GF++F A A++ MNG+ L+V ++G P + D
Sbjct: 817 SKGFGFVKFADAYSAAVALTHMNGYPLDGHVLEVRIAGVHPDAMSSYMAHFYSHFTMHDP 876
Query: 323 VKNVIGIKVQY 333
K +GI Y
Sbjct: 877 AKAAVGIPTSY 887
Score = 49.7 bits (117), Expect = 0.002, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 47/84 (55%), Gaps = 6/84 (7%)
Query: 223 LQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKH 276
L+ ++V NLP+++ + + ELF FG I S +V D + GF+++ P+
Sbjct: 291 LKEVDNTNLYVGNLPASVGSHKLIELFLPFGQIVRSRVVDDCFTGLSQGYGFVKYSDPRC 350
Query: 277 ATHAVSTMNGHVFKSKPLKVTLSG 300
A+ A+ MNG + + + L+V ++G
Sbjct: 351 ASEAIKRMNGRLVEGRALEVRVAG 374
>gi|302683360|ref|XP_003031361.1| hypothetical protein SCHCODRAFT_257452 [Schizophyllum commune H4-8]
gi|300105053|gb|EFI96458.1| hypothetical protein SCHCODRAFT_257452 [Schizophyllum commune H4-8]
Length = 624
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 76/274 (27%), Positives = 129/274 (47%), Gaps = 24/274 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+P+V L F G + +RV R+ S G+A + + A+ ++A ++
Sbjct: 44 LYVGELDPTVTESMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEQL 103
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N I ++P I + + P R G +F+KNL E +D + L F FG
Sbjct: 104 NYSSIKNRPCRIMWSQRDPALRKTGQG---------NIFIKNLDEQIDNKALHDTFAAFG 154
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
N++ K+ DE+G SKG+GF+ + + +AAE AI +NG ++ +V G +
Sbjct: 155 NVLSCKVATDEHGNSKGYGFVHYETAEAAENAIKSVNGMLLNDKKVYV-------GPHIS 207
Query: 216 PKVKPPLLQPARKN--KIFVANLPSNINNSEFEELFARFGTITSSSLVSDKH-----IGF 268
K + + R + ++V N+ + + EFE LF ++G + SS L D GF
Sbjct: 208 RKERQSKIDEMRAHFTNLYVKNIDPEVTDEEFENLFKQYGQVQSSLLKRDDQGRNLGFGF 267
Query: 269 IEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
+ F + A AV ++ F + L V + K
Sbjct: 268 VNFETHEEAQKAVDALHESDFHGRKLYVARAQKK 301
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 79/290 (27%), Positives = 146/290 (50%), Gaps = 35/290 (12%)
Query: 34 ENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARV 93
+ + + NL+ +DN+AL + F FG + +VA +++ S+G+ + + T A+ A
Sbjct: 129 QGNIFIKNLDEQIDNKALHDTFAAFGNVLSCKVATDEHGNSKGYGFVHYETAEAAENAIK 188
Query: 94 EMNGHLIGSKPVIITFVELKPGQRSKPVGP----EEKQYKKDK-------VFVKNLVETV 142
+NG L+ K V VGP +E+Q K D+ ++VKN+ V
Sbjct: 189 SVNGMLLNDKKVY--------------VGPHISRKERQSKIDEMRAHFTNLYVKNIDPEV 234
Query: 143 DEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTF 202
+EE ++ F ++G + + RD+ G++ GFGF+ F +++ A+KA+ ++ +
Sbjct: 235 TDEEFENLFKQYGQVQSSLLKRDDQGRNLGFGFVNFETHEEAQKAVDALHESDFHGRKLY 294
Query: 203 VSLAEIVPGKKVFPKVKPPLLQPARKNK-----IFVANLPSNINNSEFEELFARFGTITS 257
V+ A+ ++ + + + R NK +++ NL ++++ + F FGTITS
Sbjct: 295 VARAQKKAEREAELRKQYDQARQERMNKYQGVNLYIKNLEDDVDDEKLRAEFEPFGTITS 354
Query: 258 SSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
++ D K GF+ + P AT AV+ MN + SKPL V+L+ K
Sbjct: 355 CRVMRDERGKSKGFGFVCYSAPDEATKAVAEMNNKMIGSKPLYVSLAQRK 404
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 59/97 (60%)
Query: 23 RSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVF 82
++ +E Y+ L++ NLE VD++ L EF+ FGT+ RV R++ +S+GF + +
Sbjct: 314 QARQERMNKYQGVNLYIKNLEDDVDDEKLRAEFEPFGTITSCRVMRDERGKSKGFGFVCY 373
Query: 83 NTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSK 119
+ P EA KA EMN +IGSKP+ ++ + K +R +
Sbjct: 374 SAPDEATKAVAEMNNKMIGSKPLYVSLAQRKEIRRQQ 410
>gi|255718749|ref|XP_002555655.1| KLTH0G14344p [Lachancea thermotolerans]
gi|238937039|emb|CAR25218.1| KLTH0G14344p [Lachancea thermotolerans CBS 6340]
Length = 587
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 84/274 (30%), Positives = 136/274 (49%), Gaps = 13/274 (4%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL P++DN+AL + F FG + ++A ++ +SR F + F AK+A +NG
Sbjct: 132 IKNLHPAIDNKALHDTFSVFGNILSCKIATDETGKSRKFGFVHFEEEEAAKEAIDAINGM 191
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ V + K ++SK +E + V+VKN+ +EE + F +G I
Sbjct: 192 LLNGLEVYVAPHVSKKDRQSKL---DEVKSNFTNVYVKNIDSETTQEEFEKMFSNYGAIT 248
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKK 213
+ RD GK +GFGF+ F + AA KA E+N + +V A+ + KK
Sbjct: 249 SAVLERDNEGKLRGFGFVNFEDHNAALKACEELNDTDFKGQKLYVGRAQKKYERLQELKK 308
Query: 214 VFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGF 268
+ + L + +FV NL ++++ + EE FA FGTITS ++ D K GF
Sbjct: 309 QYESSRMEKLAKYQGVNLFVKNLDDSVDDQKLEEEFAPFGTITSVKVMRDEAGNSKGFGF 368
Query: 269 IEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
+ F P+ AT A++ N + KPL V ++ K
Sbjct: 369 VCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRK 402
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 82/268 (30%), Positives = 126/268 (47%), Gaps = 24/268 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+PSV L + F G++ +RV R+ S G+A + F+ + A ++
Sbjct: 42 LYVGELDPSVTEALLYDLFSPIGSVSSIRVCRDAITKTSLGYAYVNFHDHNAGRTAIEKL 101
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N I +P I + + P R K G VF+KNL +D + L F FG
Sbjct: 102 NYTPIKGRPCRIMWSQRDPSLRKKGSG---------NVFIKNLHPAIDNKALHDTFSVFG 152
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ KI DE GKS+ FGF+ F +AA++AI +NG ++ +V+ V
Sbjct: 153 NILSCKIATDETGKSRKFGFVHFEEEEAAKEAIDAINGMLLNGLEVYVA-------PHVS 205
Query: 216 PKVKPPLLQPARKN--KIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGF 268
K + L + N ++V N+ S EFE++F+ +G ITS+ L D + GF
Sbjct: 206 KKDRQSKLDEVKSNFTNVYVKNIDSETTQEEFEKMFSNYGAITSAVLERDNEGKLRGFGF 265
Query: 269 IEFIMPKHATHAVSTMNGHVFKSKPLKV 296
+ F A A +N FK + L V
Sbjct: 266 VNFEDHNAALKACEELNDTDFKGQKLYV 293
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 89/179 (49%), Gaps = 9/179 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
++V N++ + F +G + + R+ + RGF + F A KA E+N
Sbjct: 223 VYVKNIDSETTQEEFEKMFSNYGAITSAVLERDNEGKLRGFGFVNFEDHNAALKACEELN 282
Query: 97 GHLIGSKPVII--------TFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELK 148
+ + + ELK S + K Y+ +FVKNL ++VD+++L+
Sbjct: 283 DTDFKGQKLYVGRAQKKYERLQELKKQYESSRMEKLAK-YQGVNLFVKNLDDSVDDQKLE 341
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
F FG I VK++RDE G SKGFGF+ F + + A KAI E N +++ +V++A+
Sbjct: 342 EEFAPFGTITSVKVMRDEAGNSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQ 400
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 52/88 (59%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L V NL+ SVD+Q L EF FGT+ V+V R++ S+GF + F+TP EA KA
Sbjct: 321 YQGVNLFVKNLDDSVDDQKLEEEFAPFGTITSVKVMRDEAGNSKGFGFVCFSTPEEATKA 380
Query: 92 RVEMNGHLIGSKPVIITFVELKPGQRSK 119
E N ++ KP+ + + K +RS+
Sbjct: 381 ITEKNQQIVAGKPLYVAIAQRKEVRRSQ 408
>gi|225441084|ref|XP_002264613.1| PREDICTED: probable polyadenylate-binding protein At2g36660 [Vitis
vinifera]
gi|297740018|emb|CBI30200.3| unnamed protein product [Vitis vinifera]
Length = 634
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 92/309 (29%), Positives = 155/309 (50%), Gaps = 27/309 (8%)
Query: 5 GKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDV 64
GK++ W D + RS N + V NL S+DN L F+KFG +
Sbjct: 80 GKVIRVMWSH--RDPDARRSGIGN--------VFVKNLSDSIDNVRLQAMFQKFGNILSC 129
Query: 65 RVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIIT-FVELKPGQRSKPVGP 123
+V ++ +S+G+ + F + A A ++NG +I K + FV +++ V P
Sbjct: 130 KVVVTEDGKSKGYGFVQFESEEYANAAIEKLNGFIIDGKQIYAGKFV-----RKTDRVLP 184
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
K +++KNL V EE L+ F +FG I + I +DENG S+GFGF+ F S +
Sbjct: 185 NPDA-KYTNLYIKNLDPDVTEEALREKFFEFGKIASLVISKDENGMSRGFGFVNFESPED 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAEIVPGK-----KVFPKVKPPLLQPARKNKIFVANLPS 238
A++A+ +NG + +V+ A+ + + F + + + R + ++V N+
Sbjct: 244 AKRALEALNGLQLGSKVLYVARAQKKAEREQLLRRQFEEKRNEQILKYRGSNVYVKNIDD 303
Query: 239 NINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKP 293
N+N+ + E F+ G ITS+ L+ D K GF+ F P A+ AV+T +G++F KP
Sbjct: 304 NVNDDDLREHFSVCGKITSAKLMRDQKGISKGFGFVCFSTPDEASKAVNTFHGYMFHRKP 363
Query: 294 LKVTLSGTK 302
L V ++ K
Sbjct: 364 LYVAIAQRK 372
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 80/268 (29%), Positives = 127/268 (47%), Gaps = 24/268 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKND-ESRGFAIIVFNTPAEAKKARVEM 95
L+V +L P + + L + F +F +L VR+ R+ + S + + F +P +A A
Sbjct: 14 LYVGDLHPDITDGLLFDAFSEFKSLASVRICRDSSSGRSLCYGYVNFISPQDASHAIEAK 73
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N ++ K + + + P R +G VFVKNL +++D L++ F KFG
Sbjct: 74 NHTMLHGKVIRVMWSHRDPDARRSGIG---------NVFVKNLSDSIDNVRLQAMFQKFG 124
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+V E+GKSKG+GF+QF S + A AI ++NG +I + K
Sbjct: 125 NILSCKVVVTEDGKSKGYGFVQFESEEYANAAIEKLNGFIIDGKQIYAG--------KFV 176
Query: 216 PKVKPPLLQP-ARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFI 269
K L P A+ +++ NL ++ E F FG I S + D + GF+
Sbjct: 177 RKTDRVLPNPDAKYTNLYIKNLDPDVTEEALREKFFEFGKIASLVISKDENGMSRGFGFV 236
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKVT 297
F P+ A A+ +NG SK L V
Sbjct: 237 NFESPEDAKRALEALNGLQLGSKVLYVA 264
Score = 40.8 bits (94), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 7/90 (7%)
Query: 220 PPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKH------IGFIEFIM 273
PP + PA ++V +L +I + + F+ F ++ S + D G++ FI
Sbjct: 4 PPTV-PAAPASLYVGDLHPDITDGLLFDAFSEFKSLASVRICRDSSSGRSLCYGYVNFIS 62
Query: 274 PKHATHAVSTMNGHVFKSKPLKVTLSGTKP 303
P+ A+HA+ N + K ++V S P
Sbjct: 63 PQDASHAIEAKNHTMLHGKVIRVMWSHRDP 92
>gi|2935338|gb|AAC39368.1| poly(A) binding protein RB47 [Chlamydomonas reinhardtii]
Length = 623
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 80/269 (29%), Positives = 126/269 (46%), Gaps = 27/269 (10%)
Query: 35 NELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNT---PAEAKK 90
+ L+V +LE V L F G + +RV R+ S G+A + +N+ P A +
Sbjct: 23 SSLYVGDLEKDVTEAQLFELFSSVGPVASIRVCRDAVTRRSLGYAYVNYNSALDPQAADR 82
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A +N H++ KP+ I + P R VG +F+KNL +T+D + L
Sbjct: 83 AMETLNYHVVNGKPMRIMWSHRDPSARKSGVG---------NIFIKNLDKTIDAKALHDT 133
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVP 210
F FG I+ K+ D NG SKG+GF+ F AA++AI +N + I+ +V+ P
Sbjct: 134 FSAFGKILSCKVATDANGVSKGYGFVHFEDQAAADRAIQTVNQKKIEGKIVYVA-----P 188
Query: 211 GKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KH 265
+K + + L +FV NLP++I + E ++ G ITS+ ++ D K
Sbjct: 189 FQKRADRPRARTLY----TNVFVKNLPADIGDDELGKMATEHGEITSAVVMKDDKGGSKG 244
Query: 266 IGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
GFI F + A V +N K L
Sbjct: 245 FGFINFKDAESAAKCVEYLNEREMSGKTL 273
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 82/278 (29%), Positives = 130/278 (46%), Gaps = 19/278 (6%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ ++D +AL + F FG + +VA + N S+G+ + F A A +A +N
Sbjct: 116 IFIKNLDKTIDAKALHDTFSAFGKILSCKVATDANGVSKGYGFVHFEDQAAADRAIQTVN 175
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
I K V + P Q+ Y VFVKNL + ++EL + G
Sbjct: 176 QKKIEGKIVYVA-----PFQKRADRPRARTLYTN--VFVKNLPADIGDDELGKMATEHGE 228
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFP 216
I +++D+ G SKGFGFI F ++A K + +N R + + + A+ ++
Sbjct: 229 ITSAVVMKDDKGGSKGFGFINFKDAESAAKCVEYLNEREMSGKTLYAGRAQKKTEREAML 288
Query: 217 KVKPPLLQPARKNK-----IFVANLPS-NINNSEFEELFARFGTITSSSLVSD-----KH 265
+ K + R K ++V NL +++ ELFA GTITS ++ D K
Sbjct: 289 RQKAEESKQERYLKYQSMNLYVKNLSDEEVDDDALRELFANSGTITSCKVMKDGSGKSKG 348
Query: 266 IGFIEFIMPKHATH-AVSTMNGHVFKSKPLKVTLSGTK 302
GF+ F AT V+ MNG + K KPL V L+ K
Sbjct: 349 FGFVCFTSHDEATRPPVTEMNGKMVKGKPLYVALAQRK 386
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 59/116 (50%), Gaps = 2/116 (1%)
Query: 5 GKILEASWDEGISDDEGARSNKENNKVYKENELHVNNL-EPSVDNQALINEFKKFGTLRD 63
G+ + + E + + S +E Y+ L+V NL + VD+ AL F GT+
Sbjct: 276 GRAQKKTEREAMLRQKAEESKQERYLKYQSMNLYVKNLSDEEVDDDALRELFANSGTITS 335
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARV-EMNGHLIGSKPVIITFVELKPGQRS 118
+V ++ + +S+GF + F + EA + V EMNG ++ KP+ + + K +R+
Sbjct: 336 CKVMKDGSGKSKGFGFVCFTSHDEATRPPVTEMNGKMVKGKPLYVALAQRKDVRRA 391
Score = 42.4 bits (98), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 42/92 (45%), Gaps = 9/92 (9%)
Query: 221 PLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDK---------HIGFIEF 271
P P + ++V +L ++ ++ ELF+ G + S + D ++ +
Sbjct: 15 PASTPLANSSLYVGDLEKDVTEAQLFELFSSVGPVASIRVCRDAVTRRSLGYAYVNYNSA 74
Query: 272 IMPKHATHAVSTMNGHVFKSKPLKVTLSGTKP 303
+ P+ A A+ T+N HV KP+++ S P
Sbjct: 75 LDPQAADRAMETLNYHVVNGKPMRIMWSHRDP 106
>gi|389748929|gb|EIM90106.1| polyadenylate binding protein [Stereum hirsutum FP-91666 SS1]
Length = 682
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 89/316 (28%), Positives = 147/316 (46%), Gaps = 33/316 (10%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQ----------ALIN 53
KG+ W + D R + N + + NL+ +DN+ AL +
Sbjct: 111 KGRACRIMWSQ---RDPALRKTGQGN-------IFIKNLDELIDNKVRTAQKTPPHALHD 160
Query: 54 EFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELK 113
F FG + +VA ++ SRG+ + + T A+ A +NG L+ K V + + +
Sbjct: 161 TFAAFGNVLSCKVATDEQGRSRGYGYVHYETAEAAESAIKAVNGMLLNDKKVYVGYHISR 220
Query: 114 PGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGF 173
++SK EE + ++VKNL V +++ F +FG + I DE GKSKGF
Sbjct: 221 KERQSKL---EEMRAHFTNLYVKNLDLEVTQDQFVELFSQFGAVTSAVIQTDEEGKSKGF 277
Query: 174 GFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGK-----KVFPKVKPPLLQPARK 228
GF+ F +++ A KA+ ++ FVS A+ + K + K L +
Sbjct: 278 GFVNFENHEQAAKAVDTLHDTDFNGKKLFVSRAQKKAEREEELRKSYESAKMEKLSKYQG 337
Query: 229 NKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVST 283
+++ NL ++++ + F FGTITS ++ D K GF+ F P AT AV+
Sbjct: 338 VNLYIKNLEDDVDDEKLRAEFEPFGTITSCKVMRDDKGTSKGFGFVCFSSPDEATKAVAE 397
Query: 284 MNGHVFKSKPLKVTLS 299
MN + SKPL V+L+
Sbjct: 398 MNNKMIGSKPLYVSLA 413
Score = 110 bits (275), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 76/279 (27%), Positives = 131/279 (46%), Gaps = 34/279 (12%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+P+V L F G + +RV R+ S G+A + + + ++A ++
Sbjct: 46 LYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNVTDGERALEQL 105
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEE---------- 145
N LI + I + + P R G +F+KNL E +D +
Sbjct: 106 NYSLIKGRACRIMWSQRDPALRKTGQG---------NIFIKNLDELIDNKVRTAQKTPPH 156
Query: 146 ELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL 205
L F FGN++ K+ DE G+S+G+G++ + + +AAE AI +NG ++ +V
Sbjct: 157 ALHDTFAAFGNVLSCKVATDEQGRSRGYGYVHYETAEAAESAIKAVNGMLLNDKKVYV-- 214
Query: 206 AEIVPGKKVFPKVKPPLLQPARKN--KIFVANLPSNINNSEFEELFARFGTITSSSLVSD 263
G + K + L+ R + ++V NL + +F ELF++FG +TS+ + +D
Sbjct: 215 -----GYHISRKERQSKLEEMRAHFTNLYVKNLDLEVTQDQFVELFSQFGAVTSAVIQTD 269
Query: 264 -----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVT 297
K GF+ F + A AV T++ F K L V+
Sbjct: 270 EEGKSKGFGFVNFENHEQAAKAVDTLHDTDFNGKKLFVS 308
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 94/178 (52%), Gaps = 7/178 (3%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L+V NL+ V + F +FG + + ++ +S+GF + F +A KA ++
Sbjct: 237 LYVKNLDLEVTQDQFVELFSQFGAVTSAVIQTDEEGKSKGFGFVNFENHEQAAKAVDTLH 296
Query: 97 GHLIGSKPVIITFVELKPGQ-----RSKPVGPEEK--QYKKDKVFVKNLVETVDEEELKS 149
K + ++ + K + +S EK +Y+ +++KNL + VD+E+L++
Sbjct: 297 DTDFNGKKLFVSRAQKKAEREEELRKSYESAKMEKLSKYQGVNLYIKNLEDDVDDEKLRA 356
Query: 150 HFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
F FG I K++RD+ G SKGFGF+ F S A KA+ EMN +MI +VSLA+
Sbjct: 357 EFEPFGTITSCKVMRDDKGTSKGFGFVCFSSPDEATKAVAEMNNKMIGSKPLYVSLAQ 414
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 54/88 (61%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L++ NLE VD++ L EF+ FGT+ +V R+ S+GF + F++P EA KA
Sbjct: 335 YQGVNLYIKNLEDDVDDEKLRAEFEPFGTITSCKVMRDDKGTSKGFGFVCFSSPDEATKA 394
Query: 92 RVEMNGHLIGSKPVIITFVELKPGQRSK 119
EMN +IGSKP+ ++ + + +R +
Sbjct: 395 VAEMNNKMIGSKPLYVSLAQRREVRRQQ 422
>gi|413954516|gb|AFW87165.1| hypothetical protein ZEAMMB73_979278 [Zea mays]
gi|414865260|tpg|DAA43817.1| TPA: hypothetical protein ZEAMMB73_808082 [Zea mays]
Length = 643
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 83/283 (29%), Positives = 137/283 (48%), Gaps = 34/283 (12%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L V NLEP++D++ L F FG + +VA + +S+G+ + + T A+ A +N
Sbjct: 125 LFVKNLEPNIDSKNLYEIFSSFGAILSCKVATDSAGQSKGYGFVQYETEESAEAAINGLN 184
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G L ++ + FV L +R +++ K V++KNL E++L+ F FG
Sbjct: 185 GMLANNRKM---FVGLHMRRR-------DREVKFTNVYIKNLPTEFSEDDLRQEFAPFGE 234
Query: 157 IIEVKIVRDENGKSKGFGFIQF----FSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGK 212
I ++RD +G SK FGF+ F F+ +A EKA NG+ I + +V A+ +
Sbjct: 235 ITSAVVMRDADGASKCFGFVNFKKPEFAIEAVEKA----NGKAIGDKTLYVGRAQKKEER 290
Query: 213 KVFPKVKPPLLQPARKNKI--------FVANLPSNINNSEFEELFARFGTITSSSLVSD- 263
K K + R NK+ ++ N+ IN+ ++LF FG + S ++ D
Sbjct: 291 KAELKTR---FGRGRDNKVDKPNGINLYLKNIDDGINDEGLKKLFEEFGQVASCKVMVDA 347
Query: 264 ----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
K GF+ F + A++ MNG + KPL V L+ K
Sbjct: 348 RGRSKGSGFVSFATAEAGQRAINRMNGRIVGKKPLYVGLAQPK 390
Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 76/266 (28%), Positives = 125/266 (46%), Gaps = 27/266 (10%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L +VD L F + + VRV R+ + S G+ + F + EA +A +
Sbjct: 37 LYVGDLAETVDEPQLHALFSQVAPVATVRVCRDILSGVSLGYGYVNFYSRQEATRALEAL 96
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N P+I ++ + R P ++ + +FVKNL +D + L F FG
Sbjct: 97 N-----FTPLIGKYIRVMFSNRD----PSLRKSGRANLFVKNLEPNIDSKNLYEIFSSFG 147
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
I+ K+ D G+SKG+GF+Q+ + ++AE AI +NG + + FV L ++V
Sbjct: 148 AILSCKVATDSAGQSKGYGFVQYETEESAEAAINGLNGMLANNRKMFVGLHMRRRDREV- 206
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIE 270
+ +++ NLP+ + + + FA FG ITS+ ++ D K GF+
Sbjct: 207 -----------KFTNVYIKNLPTEFSEDDLRQEFAPFGEITSAVVMRDADGASKCFGFVN 255
Query: 271 FIMPKHATHAVSTMNGHVFKSKPLKV 296
F P+ A AV NG K L V
Sbjct: 256 FKKPEFAIEAVEKANGKAIGDKTLYV 281
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 95/189 (50%), Gaps = 7/189 (3%)
Query: 26 KENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTP 85
+ ++ K +++ NL L EF FG + V R+ + S+ F + F P
Sbjct: 200 RRRDREVKFTNVYIKNLPTEFSEDDLRQEFAPFGEITSAVVMRDADGASKCFGFVNFKKP 259
Query: 86 AEAKKARVEMNGHLIGSKPVIITFVELKPGQRS--KPVGPEEKQYKKDK-----VFVKNL 138
A +A + NG IG K + + + K +++ K + K DK +++KN+
Sbjct: 260 EFAIEAVEKANGKAIGDKTLYVGRAQKKEERKAELKTRFGRGRDNKVDKPNGINLYLKNI 319
Query: 139 VETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQH 198
+ +++E LK F +FG + K++ D G+SKG GF+ F + +A ++AI MNGR++
Sbjct: 320 DDGINDEGLKKLFEEFGQVASCKVMVDARGRSKGSGFVSFATAEAGQRAINRMNGRIVGK 379
Query: 199 NSTFVSLAE 207
+V LA+
Sbjct: 380 KPLYVGLAQ 388
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 28 NNKVYKEN--ELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTP 85
+NKV K N L++ N++ ++++ L F++FG + +V + S+G + F T
Sbjct: 303 DNKVDKPNGINLYLKNIDDGINDEGLKKLFEEFGQVASCKVMVDARGRSKGSGFVSFATA 362
Query: 86 AEAKKARVEMNGHLIGSKPVIITFVELK 113
++A MNG ++G KP+ + + K
Sbjct: 363 EAGQRAINRMNGRIVGKKPLYVGLAQPK 390
>gi|47933430|gb|AAT39343.1| polyadenylate binding protein [Oikopleura dioica]
Length = 610
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 82/273 (30%), Positives = 129/273 (47%), Gaps = 38/273 (13%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L P + L ++F+ G + +RV R+ S G+A + F PA+A++A M
Sbjct: 4 LYVGDLHPDITEAMLYDKFQASGPVLSIRVCRDMVTRRSLGYAYVNFQQPADAERALDTM 63
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N +I KP+ I + + P R G VF+KNL ++D + L F FG
Sbjct: 64 NFDVIKGKPIRIMWSQRDPSLRRSGQG---------NVFIKNLDRSIDNKALYDTFSSFG 114
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVS--------LAE 207
NI+ K+V D NG SKGFGF+ + S ++A++AI ++NG +++ FV+ + E
Sbjct: 115 NILSCKVVCDING-SKGFGFVHYESDESAQRAIEKVNGMLMEDKKVFVARFKSRNDRMRE 173
Query: 208 IVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD---- 263
K F +FV NLP + + + F +FG + S ++ D
Sbjct: 174 FGDAAKHF-------------TNLFVKNLPDSWDTDALLKNFEQFGEVVSHKVICDETTG 220
Query: 264 --KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
K GFI F A AV M+ + K L
Sbjct: 221 LSKCHGFISFKEHDQAEAAVEIMHEKEIEGKKL 253
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 100/385 (25%), Positives = 167/385 (43%), Gaps = 78/385 (20%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK + W + D R + + N + + NL+ S+DN+AL + F FG +
Sbjct: 69 KGKPIRIMWSQ---RDPSLRRSGQGN-------VFIKNLDRSIDNKALYDTFSSFGNILS 118
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V + N S+GF + + + A++A ++NG L+ K V + + + R + G
Sbjct: 119 CKVVCDING-SKGFGFVHYESDESAQRAIEKVNGMLMEDKKVFVARFKSR-NDRMREFGD 176
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDEN-GKSKGFGFIQFFSYK 182
K + +FVKNL ++ D + L +F +FG ++ K++ DE G SK GFI F +
Sbjct: 177 AAKHFTN--LFVKNLPDSWDTDALLKNFEQFGEVVSHKVICDETTGLSKCHGFISFKEHD 234
Query: 183 AAEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLP 237
AE A+ M+ + I+ + A+ K + K+K +Q + ++V NL
Sbjct: 235 QAEAAVEIMHEKEIEGKKLYCGRAQKKAERSSELKAKYEKIKQERIQRYQGVNLYVKNLD 294
Query: 238 SNINNSEFEELFARFGTITSSSLVSD---------------------------------- 263
+I++ E F +FG ITS+ +++D
Sbjct: 295 DSIDDEGLREAFKQFGNITSAKVITDLNEKDEVGQAKSDQAPEEEGEAVEEKKTEDSEAA 354
Query: 264 ----------------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKPGVSI 307
K GF+ F P+ AT AV+ MNG +F KPL V L+ K
Sbjct: 355 GDAPGPEKPVSKKGRSKGFGFVCFSSPEEATKAVTEMNGRIFGGKPLYVGLAQRK----- 409
Query: 308 TNPTKAPKKPAYIDEVKNVIGIKVQ 332
KA + Y+ V GI++Q
Sbjct: 410 -EDRKAHLQQQYMQRVST--GIRMQ 431
>gi|405970795|gb|EKC35670.1| Polyadenylate-binding protein 1 [Crassostrea gigas]
Length = 462
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 86/274 (31%), Positives = 136/274 (49%), Gaps = 26/274 (9%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 13 YPMASLYVGDLHPDVTEAMLFEKFSTAGPVLPIRVCRDMITRRSLGYAYVNFQQPADAER 72
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN I +P+ I + + P R VG VF+KNL +++D + L
Sbjct: 73 ALDTMNFDTIKGRPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKSIDNKALYDT 123
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVP 210
F FGNI+ KIV DE+G S+G+GF+ F + +AA AI ++NG ++ FV
Sbjct: 124 FSAFGNILSCKIVCDEHG-SRGYGFVHFETEEAARIAIEKVNGMLLNGKKVFV------- 175
Query: 211 GKKVFPKVKPPLL-QPARK-NKIFVANLPSNINNSEFEELFARFGTITSSSLVSDK---- 264
G+ + + + +L RK N ++V N IN+ ++F +G I S+ +++D
Sbjct: 176 GRFMSRRERLEVLGDKMRKFNNVYVKNFSEEINDETLRDMFEPYGKIISAKVMTDDGSGK 235
Query: 265 --HIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
GF+ F P+ A AV +NG+ K L V
Sbjct: 236 GKGFGFVSFEDPEAAEKAVEALNGNDNSGKILYV 269
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 74/257 (28%), Positives = 132/257 (51%), Gaps = 22/257 (8%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KG+ + W + D R + N + + NL+ S+DN+AL + F FG +
Sbjct: 83 KGRPIRIMWSQ---RDPSLRKSGVGN-------VFIKNLDKSIDNKALYDTFSAFGNILS 132
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVII-TFVELKPGQRSKPVG 122
++ +++ SRG+ + F T A+ A ++NG L+ K V + F+ + +R + +G
Sbjct: 133 CKIVCDEHG-SRGYGFVHFETEEAARIAIEKVNGMLLNGKKVFVGRFMSRR--ERLEVLG 189
Query: 123 PEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSY 181
+K K + V+VKN E +++E L+ F +G II K++ D+ +GK KGFGF+ F
Sbjct: 190 --DKMRKFNNVYVKNFSEEINDETLRDMFEPYGKIISAKVMTDDGSGKGKGFGFVSFEDP 247
Query: 182 KAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANL 236
+AAEKA+ +NG +V A+ K+ F +++ + + ++V NL
Sbjct: 248 EAAEKAVEALNGNDNSGKILYVGRAQKKIERQAELKEKFERIRMERINRYQGVNLYVKNL 307
Query: 237 PSNINNSEFEELFARFG 253
NI++ + FA+FG
Sbjct: 308 DDNIDDERLRKEFAQFG 324
>gi|392558545|gb|EIW51732.1| polyadenylate binding protein [Trametes versicolor FP-101664 SS1]
Length = 631
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 82/306 (26%), Positives = 148/306 (48%), Gaps = 23/306 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KG+ W + D R + N + + NL+ +DN+AL + F FG +
Sbjct: 74 KGRACRIMWSQ---RDPALRKTGQGN-------IFIKNLDEQIDNKALHDTFAAFGNVLS 123
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+VA +++ S+G+ + + T A+ A +NG L+ K V + + ++SK
Sbjct: 124 CKVATDEHGRSKGYGFVHYETAEAAETAIKAVNGMLLNDKKVYVGHHISRKERQSK---I 180
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
EE + + ++VKN+ V +EE F FG I + D+ GKS+GFGF+ F +++
Sbjct: 181 EEMKNQFTNIYVKNVDPEVTQEEFVQLFEPFGRITSAVLQVDDEGKSRGFGFVNFDTHEE 240
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAEIVPG-----KKVFPKVKPPLLQPARKNKIFVANLPS 238
A A+ ++ ++ FV+ A+ ++ + + K + + +++ NL
Sbjct: 241 AHAAVEALHDSDVKGRKLFVARAQKKAEREEELRRSYEQAKMEKMSKYQGVNLYIKNLED 300
Query: 239 NINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKP 293
+I++ F FG ITS+ ++ D K GF+ F P AT AV+ MN + +KP
Sbjct: 301 DIDDERLRGEFEPFGNITSAKVMRDEKGISKGFGFVCFSSPDEATKAVAEMNNKMIGTKP 360
Query: 294 LKVTLS 299
L V+L+
Sbjct: 361 LYVSLA 366
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 76/269 (28%), Positives = 127/269 (47%), Gaps = 24/269 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+P+V L F G + +RV R+ S G+A + + A+ ++A ++
Sbjct: 9 LYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEQL 68
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI + I + + P R G +F+KNL E +D + L F FG
Sbjct: 69 NYSLIKGRACRIMWSQRDPALRKTGQG---------NIFIKNLDEQIDNKALHDTFAAFG 119
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
N++ K+ DE+G+SKG+GF+ + + +AAE AI +NG ++ +V G +
Sbjct: 120 NVLSCKVATDEHGRSKGYGFVHYETAEAAETAIKAVNGMLLNDKKVYV-------GHHIS 172
Query: 216 PKVKPPLLQPARKN--KIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGF 268
K + ++ + I+V N+ + EF +LF FG ITS+ L D + GF
Sbjct: 173 RKERQSKIEEMKNQFTNIYVKNVDPEVTQEEFVQLFEPFGRITSAVLQVDDEGKSRGFGF 232
Query: 269 IEFIMPKHATHAVSTMNGHVFKSKPLKVT 297
+ F + A AV ++ K + L V
Sbjct: 233 VNFDTHEEAHAAVEALHDSDVKGRKLFVA 261
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 96/179 (53%), Gaps = 9/179 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
++V N++P V + + F+ FG + + + +SRGF + F+T EA A ++
Sbjct: 190 IYVKNVDPEVTQEEFVQLFEPFGRITSAVLQVDDEGKSRGFGFVNFDTHEEAHAAVEALH 249
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDK--------VFVKNLVETVDEEELK 148
+ + + + + K +R + + +Q K +K +++KNL + +D+E L+
Sbjct: 250 DSDVKGRKLFVARAQ-KKAEREEELRRSYEQAKMEKMSKYQGVNLYIKNLEDDIDDERLR 308
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
F FGNI K++RDE G SKGFGF+ F S A KA+ EMN +MI +VSLA+
Sbjct: 309 GEFEPFGNITSAKVMRDEKGISKGFGFVCFSSPDEATKAVAEMNNKMIGTKPLYVSLAQ 367
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 54/88 (61%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L++ NLE +D++ L EF+ FG + +V R++ S+GF + F++P EA KA
Sbjct: 288 YQGVNLYIKNLEDDIDDERLRGEFEPFGNITSAKVMRDEKGISKGFGFVCFSSPDEATKA 347
Query: 92 RVEMNGHLIGSKPVIITFVELKPGQRSK 119
EMN +IG+KP+ ++ + + +R +
Sbjct: 348 VAEMNNKMIGTKPLYVSLAQRREVRRQQ 375
>gi|405977322|gb|EKC41780.1| Polyadenylate-binding protein 4 [Crassostrea gigas]
Length = 646
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 87/274 (31%), Positives = 137/274 (50%), Gaps = 26/274 (9%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 13 YPMASLYVGDLHPDVTEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 72
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN I +P+ I + + P R VG VF+KNL +++D + L
Sbjct: 73 ALDTMNFDTIKGRPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKSIDNKALYDT 123
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVP 210
F FGNI+ KIV DE+G S+G+GF+ F + +AA AI ++NG ++ FV
Sbjct: 124 FSAFGNILSCKIVCDEHG-SRGYGFVHFETEEAARIAIEKVNGMLLNGKKVFV------- 175
Query: 211 GKKVFPKVKPPLL-QPARK-NKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----- 263
G+ + + + +L RK N ++V N IN+ ++F +G I S+ +++D
Sbjct: 176 GRFMSRRERLEVLGDKMRKFNNVYVKNFSEEINDETLRDMFEPYGKIISAKVMTDDGSGK 235
Query: 264 -KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
K GF+ F P+ A AV +NG+ K L V
Sbjct: 236 GKGFGFVSFEDPEAAEKAVEALNGNDNSGKILYV 269
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 96/310 (30%), Positives = 165/310 (53%), Gaps = 26/310 (8%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KG+ + W + D R + N + + NL+ S+DN+AL + F FG +
Sbjct: 83 KGRPIRIMWSQ---RDPSLRKSGVGN-------VFIKNLDKSIDNKALYDTFSAFGNILS 132
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVII-TFVELKPGQRSKPVG 122
++ +++ SRG+ + F T A+ A ++NG L+ K V + F+ + +R + +G
Sbjct: 133 CKIVCDEHG-SRGYGFVHFETEEAARIAIEKVNGMLLNGKKVFVGRFMSRR--ERLEVLG 189
Query: 123 PEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSY 181
+K K + V+VKN E +++E L+ F +G II K++ D+ +GK KGFGF+ F
Sbjct: 190 --DKMRKFNNVYVKNFSEEINDETLRDMFEPYGKIISAKVMTDDGSGKGKGFGFVSFEDP 247
Query: 182 KAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANL 236
+AAEKA+ +NG +V A+ K+ F +++ + + ++V NL
Sbjct: 248 EAAEKAVEALNGNDNSGKILYVGRAQKKIERQAELKEKFERIRMERINRYQGVNLYVKNL 307
Query: 237 PSNINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSK 292
NI++ + FA+FGTITS+ ++++ K GF+ F P+ AT AV+ MNG + +K
Sbjct: 308 DDNIDDERLRKEFAQFGTITSAKVMTEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVVAK 367
Query: 293 PLKVTLSGTK 302
PL V L+ K
Sbjct: 368 PLYVALAQRK 377
>gi|38345560|emb|CAE03434.2| OSJNBa0032F06.17 [Oryza sativa Japonica Group]
Length = 924
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 86/294 (29%), Positives = 140/294 (47%), Gaps = 24/294 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V NL SV + LI F FG + RV + S+G+ + ++ P A +A M
Sbjct: 211 LYVGNLPASVGSHKLIELFLPFGQIVRSRVVDDCFTGLSQGYGFVKYSDPRCASEAIKRM 270
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
NG L+ + + P P K+ K++V NL +++ + L F+ FG
Sbjct: 271 NGRLVEGTALKVRVTGF-PSSEDNSQQPS-KETDMAKLYVCNLSLSMNTDRLIHLFLPFG 328
Query: 156 NIIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHN----------STFVS 204
+ K+ +D G SKG+GF+Q+ S A +A+I +NGR++ ST +
Sbjct: 329 EVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIHLNGRLVDGRKIEVRVSGIPSTLPN 388
Query: 205 LAEIVPGKKVFPKVKPPLLQPARK----NKIFVANLPSNINNSEFEELFARFGTITSSSL 260
A P V+ P K + ++V N+PS+I+ + ELF FG IT + +
Sbjct: 389 SAVESPSTTRNSAVESPSTTRTVKEIDMSNLYVCNMPSSIDTKKLVELFLPFGKITHARV 448
Query: 261 VSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKPGVSIT 308
V+D K GFI+F + AT A++ MNG + + + V ++G P SI+
Sbjct: 449 VADPDTFSAKGYGFIKFTDSESATKAIAAMNGALVGGEMIIVRVAGLSPSASIS 502
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/265 (23%), Positives = 120/265 (45%), Gaps = 11/265 (4%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKND-ESRGFAIIVFNTPAEAKKARVEM 95
L+V N+ S+D + L+ F FG + RV + + ++G+ I F A KA M
Sbjct: 419 LYVCNMPSSIDTKKLVELFLPFGKITHARVVADPDTFSAKGYGFIKFTDSESATKAIAAM 478
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
NG L+G + +I+ L P V + K ++++ NL ++ +++ + F FG
Sbjct: 479 NGALVGGEMIIVRVAGLSPSASISAV-QTTQDINKSRLYITNLPRSMTADKMVNLFAPFG 537
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
I +V + + + + + +A KA+ M+G M++ V +E+
Sbjct: 538 QITKVLMNLE-------YSLVWYADAPSATKAVQHMDGYMVEGKRLVVKRSELCTTNASQ 590
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKHIGFIEFIMPK 275
KP ++ ++V +PS++ +F +LF FG + + + + G + F P
Sbjct: 591 AGGKP--IKEIDMANLYVGRVPSSLTEDQFIDLFRPFGRVVQARMFRFQRYGMVRFDNPS 648
Query: 276 HATHAVSTMNGHVFKSKPLKVTLSG 300
A A+ ++G+ L V ++G
Sbjct: 649 CAAAAIDHLDGYQIGGSILAVRVAG 673
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 70/314 (22%), Positives = 138/314 (43%), Gaps = 29/314 (9%)
Query: 34 ENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARV 93
++ L++ NL S+ ++N F FG + V + N E ++++ + A KA
Sbjct: 512 KSRLYITNLPRSMTADKMVNLFAPFGQITKVLM----NLE---YSLVWYADAPSATKAVQ 564
Query: 94 EMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIK 153
M+G+++ K +++ EL S+ G K+ ++V + ++ E++ F
Sbjct: 565 HMDGYMVEGKRLVVKRSELCTTNASQAGGKPIKEIDMANLYVGRVPSSLTEDQFIDLFRP 624
Query: 154 FGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKK 213
FG +++ ++ R + +G ++F + A AI ++G I + V +A + P +
Sbjct: 625 FGRVVQARMFRFQR-----YGMVRFDNPSCAAAAIDHLDGYQIGGSILAVRVAGL-PAES 678
Query: 214 VFPKVKPPLLQPARKNK--------IFVANLPSNINNSEFEELFARFGTITSSSLVSDKH 265
K L N+ ++V++LPS +NN +LF G IT + +V +++
Sbjct: 679 --NAAKGALTSQMSSNEQGQIDMTNLYVSHLPSYVNNERLIDLFLPCGQITQAKVVVERY 736
Query: 266 ------IGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKPGVSITNPTKAPKKPAY 319
GF++F A A++ MNG+ L+V ++G P +
Sbjct: 737 TGVSKGFGFVKFADAYSAAVALTHMNGYPLDGHVLEVRIAGVHPDAMSSYMAHFYSHFTM 796
Query: 320 IDEVKNVIGIKVQY 333
D K +GI Y
Sbjct: 797 HDPAKAAVGIPTSY 810
>gi|340386042|ref|XP_003391517.1| PREDICTED: polyadenylate-binding protein 1-like, partial
[Amphimedon queenslandica]
Length = 393
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 76/273 (27%), Positives = 130/273 (47%), Gaps = 21/273 (7%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L P V+ L + F K G + + V R+ S G+A I F PA+A++A M
Sbjct: 13 LYVGDLLPDVNEADLFDHFSKAGPVLSICVCRDLITKRSLGYAYIYFQQPADAERAFDTM 72
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N I +P I + + P R G +F+KNL ++D + L F FG
Sbjct: 73 NYEPIKGQPCYIMWSQRDPSLRRSRAG---------HIFIKNLERSIDHKALYDTFSAFG 123
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ D NG+SKG GF+ F +AA+ AI ++NG+++ N+ V + + +P K
Sbjct: 124 NILSCKVATDLNGQSKGIGFVHFDEQEAADLAIEKVNGQLL--NNRKVHVGKFIPRK--- 178
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIE 270
N +FV N + + F +FG+I ++ ++ D K GF+
Sbjct: 179 -DRSHTGFNQHYTNVVFVKNFGEDFTDEMLYNFFEKFGSIAAAVVMKDNEGVSKDFGFVS 237
Query: 271 FIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKP 303
F + A+ AV ++ + + + + + + P
Sbjct: 238 FESHEAASAAVQAVHSSIVNGRQVYCSRAHSMP 270
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 93/178 (52%), Gaps = 4/178 (2%)
Query: 33 KENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKAR 92
+ + + NLE S+D++AL + F FG + +VA + N +S+G + F+ A A
Sbjct: 97 RAGHIFIKNLERSIDHKALYDTFSAFGNILSCKVATDLNGQSKGIGFVHFDEQEAADLAI 156
Query: 93 VEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFI 152
++NG L+ ++ V + + P + G Q+ + VFVKN E +E L + F
Sbjct: 157 EKVNGQLLNNRKVHVG--KFIPRKDRSHTG--FNQHYTNVVFVKNFGEDFTDEMLYNFFE 212
Query: 153 KFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVP 210
KFG+I +++D G SK FGF+ F S++AA A+ ++ ++ + S A +P
Sbjct: 213 KFGSIAAAVVMKDNEGVSKDFGFVSFESHEAASAAVQAVHSSIVNGRQVYCSRAHSMP 270
>gi|357162700|ref|XP_003579494.1| PREDICTED: uncharacterized protein LOC100845138 [Brachypodium
distachyon]
Length = 929
Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 79/294 (26%), Positives = 143/294 (48%), Gaps = 29/294 (9%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDE-----SRGFAIIVFNTPAEAKK 90
L+V NL SV + LI F FG R+ R+K DE S+G+ + ++ P A
Sbjct: 206 LYVGNLPASVGSHKLIELFLPFG-----RIVRSKVADECFTGLSKGYGFVKYDDPHSATA 260
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKK-------DKVFVKNLVETVD 143
A MNG L+ K + + + P + + + Y + ++V+NL ++
Sbjct: 261 AINRMNGRLVDGKILEVRVAGVPPSGSNPSIQSVSETYSQPSEEIDMSSLYVRNLSLSMT 320
Query: 144 EEELKSHFIKFGNIIEVKIVRD-ENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTF 202
+EEL HF+ FG II+ K+ RD G +KG+GF+++ + A AII +NG +++
Sbjct: 321 KEELLQHFLPFGKIIDAKVPRDYATGLNKGYGFVRYSNSHEAANAIIHLNGHLVEGKKME 380
Query: 203 VSLAEIVPG---KKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSS 259
V ++ + P V L++ ++V N+P++I+ + E+F FG IT +
Sbjct: 381 VRVSGVSPALSNSAVESHTDARLIKEIDMANLYVCNIPTSIDTKKLIEIFLPFGKITHAR 440
Query: 260 LVSDK-------HIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKPGVS 306
+ + + GF++F + A A++ M+G + + + L V ++G S
Sbjct: 441 VAAHQGTYSGKGRYGFVKFADSQCAAEAITLMDGALVEGETLVVRVAGLSSSAS 494
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 81/318 (25%), Positives = 147/318 (46%), Gaps = 30/318 (9%)
Query: 34 ENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARV 93
++ +++ NL S + ++ F FG + V + N E ++++ + A A KA
Sbjct: 510 KSRIYITNLPRSTNADMMVKLFVPFGQISKVVM----NLE---YSLVYYADVASAVKAIK 562
Query: 94 EMNGHLIGSKPVIITFVELKP----GQRS-KPVGPEEKQYKKDKVFVKNLVETVDEEELK 148
M+G++IG K +++ + P G S + +G E K+ VFV + TV+ ++L
Sbjct: 563 HMDGYMIGGKRLVVRRSDSCPTDAAGHTSTQSLGKEVKEIDMANVFVGRIPSTVNGDQLV 622
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEI 208
F FG I++V++ + + G+G +F +A AI MNG I ++ V +A +
Sbjct: 623 ELFRPFGQIVQVRVFQHQ-----GYGMFRFNDPFSAAAAIDHMNGYQIGGSALVVRVAGL 677
Query: 209 V-PGKKVFPKVKPPLLQPARKNK------IFVANLPSNINNSEFEELFARFGTITSSSLV 261
PG L P + + ++V +LP I + E+F G IT + +V
Sbjct: 678 PNPGDFSAATDDLKLQMPGNEGRQIDMANLYVCHLPLYITTEKLIEIFLPCGQITQARVV 737
Query: 262 SDKH------IGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKPGVSITNPTKAPK 315
+D++ GF+ F A A++ MNG+ + L+V ++G P + T+
Sbjct: 738 TDRYTGISKGFGFVRFADTYSAAVALTHMNGYPLEGHILEVRIAGVHPSDMGSYMTQLYS 797
Query: 316 KPAYIDEVKNVIGIKVQY 333
+ Y D V+GI Y
Sbjct: 798 QFTYPDPSTMVVGIPTSY 815
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 67/275 (24%), Positives = 116/275 (42%), Gaps = 21/275 (7%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDES-RG-FAIIVFNTPAEAKKARVE 94
L+V N+ S+D + LI F FG + RVA ++ S +G + + F A +A
Sbjct: 412 LYVCNIPTSIDTKKLIEIFLPFGKITHARVAAHQGTYSGKGRYGFVKFADSQCAAEAITL 471
Query: 95 MNGHLIGSKPVIITFVELKPGQRSKPV------GPEEKQYKKDKVFVKNLVETVDEEELK 148
M+G L+ + +++ L S V PE K ++++ NL + + + +
Sbjct: 472 MDGALVEGETLVVRVAGLSSSASSPAVHGLPIPSPE---INKSRIYITNLPRSTNADMMV 528
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEI 208
F+ FG I +V + + + + + +A KAI M+G MI V ++
Sbjct: 529 KLFVPFGQISKVVMNLE-------YSLVYYADVASAVKAIKHMDGYMIGGKRLVVRRSDS 581
Query: 209 VPGKKVFPKVKPPLLQPARK---NKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKH 265
P L + ++ +FV +PS +N + ELF FG I + +
Sbjct: 582 CPTDAAGHTSTQSLGKEVKEIDMANVFVGRIPSTVNGDQLVELFRPFGQIVQVRVFQHQG 641
Query: 266 IGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSG 300
G F P A A+ MNG+ L V ++G
Sbjct: 642 YGMFRFNDPFSAAAAIDHMNGYQIGGSALVVRVAG 676
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 8/87 (9%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTM 284
++V NLP+++ + + ELF FG I S + + K GF+++ P AT A++ M
Sbjct: 206 LYVGNLPASVGSHKLIELFLPFGRIVRSKVADECFTGLSKGYGFVKYDDPHSATAAINRM 265
Query: 285 NGHVFKSKPLKVTLSGTKPGVSITNPT 311
NG + K L+V ++G P S +NP+
Sbjct: 266 NGRLVDGKILEVRVAGVPP--SGSNPS 290
>gi|224059164|ref|XP_002299747.1| predicted protein [Populus trichocarpa]
gi|222847005|gb|EEE84552.1| predicted protein [Populus trichocarpa]
Length = 367
Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 80/262 (30%), Positives = 136/262 (51%), Gaps = 18/262 (6%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L V NL+ S+ + L + F K+GT+ +VA +N S+GF + F + A A+ ++
Sbjct: 107 LFVKNLDFSISSSCLESIFSKYGTILSCKVA-GENGRSKGFGFVQFESQDSALVAQTALH 165
Query: 97 GHLIGSKPV-IITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
++G K + + FV K +R+ E ++VKNL ET+ E+ LK F G
Sbjct: 166 DTMLGGKKLHVCKFV--KKTERTAAAPCEVFT----NLYVKNLDETITEDGLKDMFSVVG 219
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVP 210
++ V I+ D GKSK FGF+ F S A+KA+ MNG +I + FV A+ +
Sbjct: 220 DVSSVAIMMDHEGKSKHFGFVNFKSPDDAKKAVDVMNGSVIGSKTLFVGKAQRKSERTMI 279
Query: 211 GKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLV-----SDKH 265
K+ + + + R + ++V NL +I++ + +E+F+ +G I S ++ + K
Sbjct: 280 LKQEYKDLHNRSTEKLRASNLYVKNLNVDIDDKKLKEVFSAYGKILSVKVICHNDGTSKQ 339
Query: 266 IGFIEFIMPKHATHAVSTMNGH 287
GF+ F P+ A A+ +NGH
Sbjct: 340 FGFVCFASPEEANKALVALNGH 361
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 77/267 (28%), Positives = 121/267 (45%), Gaps = 25/267 (9%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L+P V L F G + +R+ R + +S +A + + A+A +A +
Sbjct: 19 LYVGDLDPEVTETDLRAAFYHVGPISSLRLCRCRLTGKSLCYAYVNLYSHAQASRALGLL 78
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N + KP+ I + + P R +FVKNL ++ L+S F K+G
Sbjct: 79 NHTNLKGKPMRIMWCQRDPFARKTGFA---------NLFVKNLDFSISSSCLESIFSKYG 129
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
I+ K+ ENG+SKGFGF+QF S +A A ++ M+ V K
Sbjct: 130 TILSCKVA-GENGRSKGFGFVQFESQDSALVAQTALHDTMLGGKKLHVC--------KFV 180
Query: 216 PKVKPPLLQPARK-NKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFI 269
K + P ++V NL I +++F+ G ++S +++ D KH GF+
Sbjct: 181 KKTERTAAAPCEVFTNLYVKNLDETITEDGLKDMFSVVGDVSSVAIMMDHEGKSKHFGFV 240
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKV 296
F P A AV MNG V SK L V
Sbjct: 241 NFKSPDDAKKAVDVMNGSVIGSKTLFV 267
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 25 NKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNT 84
N+ K+ N L+V NL +D++ L F +G + V+V + + S+ F + F +
Sbjct: 289 NRSTEKLRASN-LYVKNLNVDIDDKKLKEVFSAYGKILSVKVICHNDGTSKQFGFVCFAS 347
Query: 85 PAEAKKARVEMNGH 98
P EA KA V +NGH
Sbjct: 348 PEEANKALVALNGH 361
>gi|198422109|ref|XP_002123332.1| PREDICTED: similar to poly A binding protein, cytoplasmic 1 b,
partial [Ciona intestinalis]
Length = 500
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 74/256 (28%), Positives = 130/256 (50%), Gaps = 28/256 (10%)
Query: 95 MNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKF 154
+NG L+ K V + L +R K +G +Q+ V++KN + DE+ L+ F K+
Sbjct: 1 VNGMLLNDKKVFVGKF-LTRSERIKKMGERVRQFTN--VYIKNFGDKYDEKTLQVMFEKY 57
Query: 155 GNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKK- 213
G + V ++RD +G S+GFGF+ + S++ A+ A+ MNG+ I+ S + + +K
Sbjct: 58 GVVKSVAVMRDRDGNSRGFGFVAYDSHEEAQAAVEAMNGQEIEGASGSTDILYVGRAQKK 117
Query: 214 ---------VFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD- 263
+ + K +Q + ++V NL N+ + E E FA +GTITS+ ++SD
Sbjct: 118 QERQQELRGQYEQQKQERIQRFQGVNLYVKNLDDNVTDDELREAFATYGTITSAKIMSDG 177
Query: 264 --------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKPGVSITNPTKAPK 315
+ GF+ F P+ AT AV+ MNG + +KPL V L+ + KA
Sbjct: 178 ECSTGERSRGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRR------EDRKAHL 231
Query: 316 KPAYIDEVKNVIGIKV 331
Y+ + + +G+++
Sbjct: 232 TAQYMQRMTSSMGVRM 247
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/201 (29%), Positives = 106/201 (52%), Gaps = 16/201 (7%)
Query: 23 RSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVF 82
R K +V + +++ N D + L F+K+G ++ V V R+++ SRGF + +
Sbjct: 22 RIKKMGERVRQFTNVYIKNFGDKYDEKTLQVMFEKYGVVKSVAVMRDRDGNSRGFGFVAY 81
Query: 83 NTPAEAKKARVEMNGHLI----GSKPVIITFVELKPGQRSKPVGPEEKQYKKDKV----- 133
++ EA+ A MNG I GS ++ K +R + + + +Q K++++
Sbjct: 82 DSHEEAQAAVEAMNGQEIEGASGSTDILYVGRAQKKQERQQELRGQYEQQKQERIQRFQG 141
Query: 134 ---FVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENG----KSKGFGFIQFFSYKAAEK 186
+VKNL + V ++EL+ F +G I KI+ D +S+GFGF+ F S + A K
Sbjct: 142 VNLYVKNLDDNVTDDELREAFATYGTITSAKIMSDGECSTGERSRGFGFVCFSSPEEATK 201
Query: 187 AIIEMNGRMIQHNSTFVSLAE 207
A+ EMNGR++ +V+LA+
Sbjct: 202 AVTEMNGRIVGTKPLYVALAQ 222
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARN----KNDESRGFAIIVFNTPAEAKKAR 92
L+V NL+ +V + L F +GT+ ++ + + SRGF + F++P EA KA
Sbjct: 144 LYVKNLDDNVTDDELREAFATYGTITSAKIMSDGECSTGERSRGFGFVCFSSPEEATKAV 203
Query: 93 VEMNGHLIGSKPVIITFVELK 113
EMNG ++G+KP+ + + +
Sbjct: 204 TEMNGRIVGTKPLYVALAQRR 224
>gi|147838149|emb|CAN74140.1| hypothetical protein VITISV_008914 [Vitis vinifera]
Length = 544
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 96/323 (29%), Positives = 162/323 (50%), Gaps = 35/323 (10%)
Query: 5 GKILEASWDEGISDDEGARSNKENN--KVYK-------ENELH---VNNLEPSVDNQALI 52
GK++ W D + RS N KVY + EL+ NL S+DN L
Sbjct: 80 GKVIRVMWSH--RDPDARRSGIGNVFVKVYLFAVTSIIDAELYFLVCLNLSDSIDNVRLQ 137
Query: 53 NEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIIT-FVE 111
F+KFG + +V ++ +S+G+ + F + A A ++NG +I K + FV
Sbjct: 138 AMFQKFGNILSCKVVVTEDGKSKGYGFVQFESEEYANAAIEKLNGFIIDGKQIYAGKFV- 196
Query: 112 LKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSK 171
+++ V P K +++KNL V EE L+ F +FG I + I +DENG S+
Sbjct: 197 ----RKTDRVLPNPDA-KYTNLYIKNLDPDVTEEALREKFFEFGKIASLVISKDENGMSR 251
Query: 172 GFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-------IVPGKKVFPKVKPPLLQ 224
GFGF+ F S + A++A+ +NG + +V+ A+ ++ ++ F + + +
Sbjct: 252 GFGFVNFESPEDAKRALEALNGLQLGSKVLYVARAQKKAEREQLL--RRQFEEKRNEQIL 309
Query: 225 PARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATH 279
R + ++V N+ N+N+ + E F+ G ITS+ L+ D K GF+ F P A+
Sbjct: 310 KYRGSNVYVKNIDDNVNDDDLREHFSVCGKITSAKLMRDQKGISKGFGFVCFSTPDEASK 369
Query: 280 AVSTMNGHVFKSKPLKVTLSGTK 302
AV+T +G++F KPL V ++ K
Sbjct: 370 AVNTFHGYMFHRKPLYVAIAQRK 392
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 80/288 (27%), Positives = 127/288 (44%), Gaps = 44/288 (15%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKND-ESRGFAIIVFNTPAEAKKARVEM 95
L+V +L P + + L + F +F +L VR+ R+ + S + + F +P +A A
Sbjct: 14 LYVGDLHPDITDGLLFDAFSEFKSLASVRICRDSSSGRSLCYGYVNFISPQDASHAIEAK 73
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVK------------------- 136
N ++ K + + + P R +G VFVK
Sbjct: 74 NHTMLHGKVIRVMWSHRDPDARRSGIG---------NVFVKVYLFAVTSIIDAELYFLVC 124
Query: 137 -NLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRM 195
NL +++D L++ F KFGNI+ K+V E+GKSKG+GF+QF S + A AI ++NG +
Sbjct: 125 LNLSDSIDNVRLQAMFQKFGNILSCKVVVTEDGKSKGYGFVQFESEEYANAAIEKLNGFI 184
Query: 196 IQHNSTFVSLAEIVPGKKVFPKVKPPLLQP-ARKNKIFVANLPSNINNSEFEELFARFGT 254
I + K K L P A+ +++ NL ++ E F FG
Sbjct: 185 IDGKQIYAG--------KFVRKTDRVLPNPDAKYTNLYIKNLDPDVTEEALREKFFEFGK 236
Query: 255 ITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVT 297
I S + D + GF+ F P+ A A+ +NG SK L V
Sbjct: 237 IASLVISKDENGMSRGFGFVNFESPEDAKRALEALNGLQLGSKVLYVA 284
Score = 42.0 bits (97), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 53/96 (55%), Gaps = 2/96 (2%)
Query: 26 KENNKV--YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFN 83
K N ++ Y+ + ++V N++ +V++ L F G + ++ R++ S+GF + F+
Sbjct: 303 KRNEQILKYRGSNVYVKNIDDNVNDDDLREHFSVCGKITSAKLMRDQKGISKGFGFVCFS 362
Query: 84 TPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSK 119
TP EA KA +G++ KP+ + + K ++++
Sbjct: 363 TPDEASKAVNTFHGYMFHRKPLYVAIAQRKEDRQAQ 398
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 7/90 (7%)
Query: 220 PPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKH------IGFIEFIM 273
PP + PA ++V +L +I + + F+ F ++ S + D G++ FI
Sbjct: 4 PPTV-PAAPASLYVGDLHPDITDGLLFDAFSEFKSLASVRICRDSSSGRSLCYGYVNFIS 62
Query: 274 PKHATHAVSTMNGHVFKSKPLKVTLSGTKP 303
P+ A+HA+ N + K ++V S P
Sbjct: 63 PQDASHAIEAKNHTMLHGKVIRVMWSHRDP 92
>gi|319411853|emb|CBQ73896.1| probable PAB1-mRNA polyadenylate-binding protein [Sporisorium
reilianum SRZ2]
Length = 650
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 78/279 (27%), Positives = 138/279 (49%), Gaps = 14/279 (5%)
Query: 34 ENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARV 93
+ + + NL+ +DN+AL + F FG + +VA N S G+ + + T A+ A
Sbjct: 134 QGNIFIKNLDAGIDNKALHDTFAAFGNILSCKVATNDTG-SLGYGFVHYETAEAAEAAIK 192
Query: 94 EMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIK 153
+NG L+ K V + + +R + EE + V+ KN+ V +EE + F +
Sbjct: 193 HVNGMLLNDKKVYVGH-HIPRKERQAKI--EESRANFTNVYAKNVDPDVTDEEFEKLFTR 249
Query: 154 FGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPG-- 211
+G I + RD++GKSKGFGF+ F + A+ A+ E++ + FV+ A+
Sbjct: 250 YGKITSCVLQRDDDGKSKGFGFVNFEDHNEAQTAVDELHDSDFKGQKLFVARAQKKSERE 309
Query: 212 ---KKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS-----D 263
++ + K L + +++ N+P + ++ E FA FG ITS ++
Sbjct: 310 EELRRSYEAAKNEKLAKFQGVNLYLKNIPESYDDERLREEFAPFGAITSCKIMRAPSGVS 369
Query: 264 KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
+ GF+ + +P+ A AVS MNG + ++PL V L+ K
Sbjct: 370 RGFGFVCYSVPEEANKAVSEMNGKMLDNRPLYVALAQRK 408
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 79/269 (29%), Positives = 129/269 (47%), Gaps = 25/269 (9%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+PSV L F G + +RV R+ S G+A + F A+ ++A ++
Sbjct: 49 LYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNFLNAADGERAMEQL 108
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI ++P I + + P R G +F+KNL +D + L F FG
Sbjct: 109 NYSLIRNRPCRIMWSQRDPALRRTGQG---------NIFIKNLDAGIDNKALHDTFAAFG 159
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ ++ G S G+GF+ + + +AAE AI +NG ++ +V G +
Sbjct: 160 NILSCKVATNDTG-SLGYGFVHYETAEAAEAAIKHVNGMLLNDKKVYV-------GHHIP 211
Query: 216 PKVKPPLLQPARKN--KIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGF 268
K + ++ +R N ++ N+ ++ + EFE+LF R+G ITS L D K GF
Sbjct: 212 RKERQAKIEESRANFTNVYAKNVDPDVTDEEFEKLFTRYGKITSCVLQRDDDGKSKGFGF 271
Query: 269 IEFIMPKHATHAVSTMNGHVFKSKPLKVT 297
+ F A AV ++ FK + L V
Sbjct: 272 VNFEDHNEAQTAVDELHDSDFKGQKLFVA 300
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 47/83 (56%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L++ N+ S D++ L EF FG + ++ R + SRGF + ++ P EA KA EMN
Sbjct: 332 LYLKNIPESYDDERLREEFAPFGAITSCKIMRAPSGVSRGFGFVCYSVPEEANKAVSEMN 391
Query: 97 GHLIGSKPVIITFVELKPGQRSK 119
G ++ ++P+ + + K +R +
Sbjct: 392 GKMLDNRPLYVALAQRKDDRRQQ 414
>gi|15228191|ref|NP_188259.1| poly(A) binding protein 6 [Arabidopsis thaliana]
gi|2062166|gb|AAB63640.1| poly(A)-binding protein isolog [Arabidopsis thaliana]
gi|9279720|dbj|BAB01277.1| poly(A) binding protein-like [Arabidopsis thaliana]
gi|332642284|gb|AEE75805.1| poly(A) binding protein 6 [Arabidopsis thaliana]
Length = 537
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 82/307 (26%), Positives = 151/307 (49%), Gaps = 26/307 (8%)
Query: 4 KGKILEASWDE-GISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLR 62
KGK + W + ++ R+ N L+V NL+ S+ + L F FG++
Sbjct: 88 KGKAMRIMWSQRDLAYRRRTRTGFAN--------LYVKNLDSSITSSCLERMFCPFGSIL 139
Query: 63 DVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLI-GSKPVIITFVELKPGQRSKPV 121
+V +N +S+GF + F+T A AR ++G ++ G K + F+ +R+
Sbjct: 140 SCKVV-EENGQSKGFGFVQFDTEQSAVSARSALHGSMVYGKKLFVAKFIN--KDERAAMA 196
Query: 122 GPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSY 181
G ++ V+VKNL+ETV ++ L + F ++G + V ++RD G+S+GFGF+ F +
Sbjct: 197 GNQDS----TNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGMGRSRGFGFVNFCNP 252
Query: 182 KAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPP---LLQP-ARKNKIFVANLP 237
+ A+KA+ + G + FV A ++ K K + +P R + ++V NL
Sbjct: 253 ENAKKAMESLCGLQLGSKKLFVGKALKKDERREMLKQKFSDNFIAKPNMRWSNLYVKNLS 312
Query: 238 SNINNSEFEELFARFGTITSSSLVS-----DKHIGFIEFIMPKHATHAVSTMNGHVFKSK 292
++N + E+F +G I S+ ++ K GF+ F + + A +NG + K
Sbjct: 313 ESMNETRLREIFGCYGQIVSAKVMCHENGRSKGFGFVCFSNCEESKQAKRYLNGFLVDGK 372
Query: 293 PLKVTLS 299
P+ V ++
Sbjct: 373 PIVVRVA 379
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 71/266 (26%), Positives = 128/266 (48%), Gaps = 20/266 (7%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L P V + LI++F + V + RN +S +A I F++P A A +
Sbjct: 23 LYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSASNAMTRL 82
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N + K + I + + R + + ++VKNL ++ L+ F FG
Sbjct: 83 NHSDLKGKAMRIMWSQRDLAYRRRT------RTGFANLYVKNLDSSITSSCLERMFCPFG 136
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
+I+ K+V +ENG+SKGFGF+QF + ++A A ++G M+ FV+ K +
Sbjct: 137 SILSCKVV-EENGQSKGFGFVQFDTEQSAVSARSALHGSMVYGKKLFVA-------KFIN 188
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIE 270
+ + ++V NL + + LF+++GT++S ++ D + GF+
Sbjct: 189 KDERAAMAGNQDSTNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGMGRSRGFGFVN 248
Query: 271 FIMPKHATHAVSTMNGHVFKSKPLKV 296
F P++A A+ ++ G SK L V
Sbjct: 249 FCNPENAKKAMESLCGLQLGSKKLFV 274
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 45/81 (55%)
Query: 33 KENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKAR 92
+ + L+V NL S++ L F +G + +V ++N S+GF + F+ E+K+A+
Sbjct: 302 RWSNLYVKNLSESMNETRLREIFGCYGQIVSAKVMCHENGRSKGFGFVCFSNCEESKQAK 361
Query: 93 VEMNGHLIGSKPVIITFVELK 113
+NG L+ KP+++ E K
Sbjct: 362 RYLNGFLVDGKPIVVRVAERK 382
>gi|10086463|gb|AAG12523.1|AC015446_4 Similar to Polyadenylate-Binding Proteins 2 and 5 [Arabidopsis
thaliana]
Length = 338
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 83/267 (31%), Positives = 127/267 (47%), Gaps = 34/267 (12%)
Query: 41 NLEPSVDNQALINEFKKFG-TLRDVRVARNKNDE-SRGFAIIVFNTPAEAKKARVEMNGH 98
+L+ SV+ L +F +F + V+V ++N S G+ + FN ++AK A +N
Sbjct: 19 DLDSSVEEGDLYTKFSEFTHDISSVKVCCDRNTGLSLGYGYVNFNHSSQAKTAMEVLNYC 78
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
+ KP+ I F E P R G VFVKNL E++D ++L F FG ++
Sbjct: 79 KLKGKPMRIMFSERDPSNRMSGRG---------NVFVKNLDESIDNKQLCDMFSAFGKVL 129
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQ----HNSTFVSLAEIVPGKKV 214
K+ RD +G SKG+GF+QF+S + A NG +I+ H FVS + +V
Sbjct: 130 SCKVARDASGVSKGYGFVQFYSDLSVYTACNFHNGTLIRNQHIHVCPFVSRGQW-DKSRV 188
Query: 215 FPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFI 269
F V +V NL +++ + LF FG ITS+ ++ D + GF+
Sbjct: 189 FTNV-------------YVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFV 235
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKV 296
F + A A+ MNG V K L V
Sbjct: 236 NFEKAEAAVTAIEKMNGVVVDEKELHV 262
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 75/238 (31%), Positives = 121/238 (50%), Gaps = 16/238 (6%)
Query: 28 NNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAE 87
+N++ + V NL+ S+DN+ L + F FG + +VAR+ + S+G+ + F +
Sbjct: 95 SNRMSGRGNVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDASGVSKGYGFVQFYSDLS 154
Query: 88 AKKARVEMNGHLIGSKPV-IITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEE 146
A NG LI ++ + + FV +S+ V+VKNLVET + +
Sbjct: 155 VYTACNFHNGTLIRNQHIHVCPFVSRGQWDKSRVF---------TNVYVKNLVETATDAD 205
Query: 147 LKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLA 206
LK F +FG I +++D GKS+ FGF+ F +AA AI +MNG ++ V A
Sbjct: 206 LKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAIEKMNGVVVDEKELHVGRA 265
Query: 207 EIVPGKKVFPKVKPPLLQPARKNK------IFVANLPSNINNSEFEELFARFGTITSS 258
+ + K K L + R K ++V NL +++N++ EELF+ FGTITS
Sbjct: 266 QRKTNRTEDLKAKFELEKIIRDMKTRKGMNLYVKNLDDSVDNTKLEELFSEFGTITSC 323
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 67/148 (45%), Gaps = 10/148 (6%)
Query: 22 ARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIV 81
+R + ++V+ ++V NL + + L F +FG + V ++ +SR F +
Sbjct: 179 SRGQWDKSRVF--TNVYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFVN 236
Query: 82 FNTPAEAKKARVEMNGHLIGSKPVIITFVE--------LKPGQRSKPVGPEEKQYKKDKV 133
F A A +MNG ++ K + + + LK + + + K K +
Sbjct: 237 FEKAEAAVTAIEKMNGVVVDEKELHVGRAQRKTNRTEDLKAKFELEKIIRDMKTRKGMNL 296
Query: 134 FVKNLVETVDEEELKSHFIKFGNIIEVK 161
+VKNL ++VD +L+ F +FG I K
Sbjct: 297 YVKNLDDSVDNTKLEELFSEFGTITSCK 324
>gi|357440279|ref|XP_003590417.1| Polyadenylate-binding protein [Medicago truncatula]
gi|355479465|gb|AES60668.1| Polyadenylate-binding protein [Medicago truncatula]
Length = 591
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 81/290 (27%), Positives = 145/290 (50%), Gaps = 21/290 (7%)
Query: 5 GKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDV 64
GK++ W +S D AR + + N + V NL S+DN L + F+K+G +
Sbjct: 83 GKVIRVMW---LSRDADARKSGKGN-------VFVKNLAASIDNVGLHDLFQKYGNILSS 132
Query: 65 RVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPE 124
++AR+++ +S+GF I F++ A A +MNG + K + + ++ +RS P
Sbjct: 133 KIARSEDGKSKGFGYIQFDSEESANVAIQKMNGSTVRDKQIYVGKF-IRKSERSLP---- 187
Query: 125 EKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAA 184
+ K ++VKNL V E+ L F FG I+ + I +DENG+SKGFGF+ + S A
Sbjct: 188 DLDAKFTNLYVKNLDPVVTEKHLGEKFSSFGKIVSLAIKKDENGQSKGFGFVNYDSPDDA 247
Query: 185 EKAIIEMNGRMIQHNSTFVSLAE-IVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNS 243
+A+ M+G +V+ A+ V +++ + + I+V N+ +++ +
Sbjct: 248 RRAMEAMDGSQFGSKILYVARAQKKVEREQILHHLFVEKGLKHMGSNIYVKNIDTSVGDE 307
Query: 244 EFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHV 288
E + F+ G + S+ ++ D K GF+ F A ++S NG +
Sbjct: 308 ELRDHFSACGEVLSAKVMRDDKGTSKGFGFVCFSTVVEAFKSMSCFNGEL 357
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 81/268 (30%), Positives = 127/268 (47%), Gaps = 24/268 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L V + L F +F TL RV ++ +S + + ++ EA +A +E+
Sbjct: 17 LYVGDLHSDVTDAQLYKAFSEFNTLISARVCKDSATGKSLCYGYVNLSSHQEAIRA-IEL 75
Query: 96 NGHL-IGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKF 154
H + K + + ++ R + K VFVKNL ++D L F K+
Sbjct: 76 KNHSSLNGKVIRVMWLSRDADAR---------KSGKGNVFVKNLAASIDNVGLHDLFQKY 126
Query: 155 GNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKV 214
GNI+ KI R E+GKSKGFG+IQF S ++A AI +MNG ++ +V I ++
Sbjct: 127 GNILSSKIARSEDGKSKGFGYIQFDSEESANVAIQKMNGSTVRDKQIYVG-KFIRKSERS 185
Query: 215 FPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFI 269
P + A+ ++V NL + E F+ FG I S ++ D K GF+
Sbjct: 186 LPDLD------AKFTNLYVKNLDPVVTEKHLGEKFSSFGKIVSLAIKKDENGQSKGFGFV 239
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKVT 297
+ P A A+ M+G F SK L V
Sbjct: 240 NYDSPDDARRAMEAMDGSQFGSKILYVA 267
>gi|402590718|gb|EJW84648.1| polyadenylate-binding protein 4, partial [Wuchereria bancrofti]
Length = 519
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 76/249 (30%), Positives = 130/249 (52%), Gaps = 15/249 (6%)
Query: 66 VARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEE 125
VA ++ S+G+ + F T A+KA ++NG L+ K V + + + R + +G
Sbjct: 1 VANDEESNSKGYGFVHFETEESAQKAIEKVNGMLLEGKKVYVGKFQPRTA-RLREMGETA 59
Query: 126 KQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAE 185
+++ V++KN + +D+E L+ F KFG I ++ D +GKSKGFGF+ F + + AE
Sbjct: 60 RRF--TNVYIKNFADELDKEALEKLFSKFGKITSAAVMVDADGKSKGFGFVAFENPEDAE 117
Query: 186 KAIIEMNGRMI--QHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
KA+ EM+ + +V A+ K+ + + K +Q + ++V NL
Sbjct: 118 KAVTEMHEYELPGTERKLYVCRAQKKNERSAELKRRYEQQKVERMQRYQGVNLYVKNLDD 177
Query: 239 NINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKP 293
+N+ ++ F +G ITS+ ++ D K GF+ F P AT AV+ MNG + +KP
Sbjct: 178 TVNDDILKQNFEAYGKITSAKVMCDDNGRSKGFGFVCFEKPDEATKAVTEMNGKMMCTKP 237
Query: 294 LKVTLSGTK 302
L V L+ K
Sbjct: 238 LYVALAQRK 246
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 103/183 (56%), Gaps = 15/183 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+++ N +D +AL F KFG + V + + +S+GF + F P +A+KA EM+
Sbjct: 65 VYIKNFADELDKEALEKLFSKFGKITSAAVMVDADGKSKGFGFVAFENPEDAEKAVTEMH 124
Query: 97 GH-LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKV-----------FVKNLVETVDE 144
+ L G++ + K +RS + +++Y++ KV +VKNL +TV++
Sbjct: 125 EYELPGTERKLYVCRAQKKNERSAEL---KRRYEQQKVERMQRYQGVNLYVKNLDDTVND 181
Query: 145 EELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVS 204
+ LK +F +G I K++ D+NG+SKGFGF+ F A KA+ EMNG+M+ +V+
Sbjct: 182 DILKQNFEAYGKITSAKVMCDDNGRSKGFGFVCFEKPDEATKAVTEMNGKMMCTKPLYVA 241
Query: 205 LAE 207
LA+
Sbjct: 242 LAQ 244
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 52/93 (55%)
Query: 27 ENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPA 86
E + Y+ L+V NL+ +V++ L F+ +G + +V + N S+GF + F P
Sbjct: 160 ERMQRYQGVNLYVKNLDDTVNDDILKQNFEAYGKITSAKVMCDDNGRSKGFGFVCFEKPD 219
Query: 87 EAKKARVEMNGHLIGSKPVIITFVELKPGQRSK 119
EA KA EMNG ++ +KP+ + + K ++++
Sbjct: 220 EATKAVTEMNGKMMCTKPLYVALAQRKEDRKAQ 252
>gi|6019464|gb|AAC64372.2| polyadenylate-binding protein 1 [Leishmania major]
Length = 560
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 78/270 (28%), Positives = 124/270 (45%), Gaps = 47/270 (17%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
++V +L+ +++ L+ FK FGT+ +VRV R+ S G+ + F+ A+KA M
Sbjct: 27 IYVGDLDATINEPQLVELFKPFGTILNVRVCRDIITQRSLGYGYVNFDNHDSAEKAIESM 86
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N +G K V + + + P R G VFVKNL + VD + L F KFG
Sbjct: 87 NFKRVGDKCVRLMWQQRDPALRYSGNG---------NVFVKNLEKDVDSKSLHDIFTKFG 137
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNG---------------RMIQHNS 200
+I+ K+++DE GKS+G+GF+ F +A+ AI++MNG I+ N+
Sbjct: 138 SILSCKVMQDEEGKSRGYGFVHFKDETSAKDAIVKMNGAADHASEDKKALYVANFIRRNA 197
Query: 201 TFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSL 260
+L A +++ + +N E+ FA+FG ITS++
Sbjct: 198 RLAALV-------------------ANFTNVYIKQVLPTVNKDVIEKFFAKFGGITSAAA 238
Query: 261 VSDKH---IGFIEFIMPKHATHAVSTMNGH 287
DK F F A AV M+ H
Sbjct: 239 CKDKSGRVFAFCNFEKHDDAVKAVEAMHDH 268
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 72/281 (25%), Positives = 126/281 (44%), Gaps = 35/281 (12%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNG- 97
V NLE VD+++L + F KFG++ +V +++ +SRG+ + F AK A V+MNG
Sbjct: 117 VKNLEKDVDSKSLHDIFTKFGSILSCKVMQDEEGKSRGYGFVHFKDETSAKDAIVKMNGA 176
Query: 98 --HLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
H K + ++ R + V++K ++ TV+++ ++ F KFG
Sbjct: 177 ADHASEDKKALYVANFIRRNARLAALVANFT-----NVYIKQVLPTVNKDVIEKFFAKFG 231
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
I +D++G+ F F F + A KA+ M+ I + PG+K++
Sbjct: 232 GITSAAACKDKSGRV--FAFCNFEKHDDAVKAVEAMHDHHIDGITA--------PGEKLY 281
Query: 216 PKVKPP------------LLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSS-LVS 262
+ P + A N ++V N ++ ELF +G + S +VS
Sbjct: 282 VQRAQPRSERLIALRQKYMQHQALGNNLYVRNFDPEFTGADLLELFKEYGEVKSCRVMVS 341
Query: 263 DKHI----GFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299
+ + GF+ F A A+ MNG + KPL V ++
Sbjct: 342 ESGVSRGFGFVSFSNADEANAALREMNGRMLNGKPLIVNIA 382
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 87/178 (48%), Gaps = 10/178 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+++ + P+V+ + F KFG + ++K+ R FA F +A KA M+
Sbjct: 209 VYIKQVLPTVNKDVIEKFFAKFGGITSAAACKDKS--GRVFAFCNFEKHDDAVKAVEAMH 266
Query: 97 GHLIG--SKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNL-VETVDEE----ELKS 149
H I + P +V+ + RS+ + ++Y + + NL V D E +L
Sbjct: 267 DHHIDGITAPGEKLYVQ-RAQPRSERLIALRQKYMQHQALGNNLYVRNFDPEFTGADLLE 325
Query: 150 HFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
F ++G + +++ E+G S+GFGF+ F + A A+ EMNGRM+ V++A+
Sbjct: 326 LFKEYGEVKSCRVMVSESGVSRGFGFVSFSNADEANAALREMNGRMLNGKPLIVNIAQ 383
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 44/79 (55%)
Query: 35 NELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVE 94
N L+V N +P L+ FK++G ++ RV +++ SRGF + F+ EA A E
Sbjct: 307 NNLYVRNFDPEFTGADLLELFKEYGEVKSCRVMVSESGVSRGFGFVSFSNADEANAALRE 366
Query: 95 MNGHLIGSKPVIITFVELK 113
MNG ++ KP+I+ + +
Sbjct: 367 MNGRMLNGKPLIVNIAQRR 385
>gi|389595349|ref|XP_003722897.1| polyadenylate-binding protein 1 [Leishmania major strain Friedlin]
gi|323364125|emb|CBZ13132.1| polyadenylate-binding protein 1 [Leishmania major strain Friedlin]
Length = 560
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 78/270 (28%), Positives = 124/270 (45%), Gaps = 47/270 (17%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
++V +L+ +++ L+ FK FGT+ +VRV R+ S G+ + F+ A+KA M
Sbjct: 27 IYVGDLDATINEPQLVELFKPFGTILNVRVCRDIITQRSLGYGYVNFDNHDSAEKAIESM 86
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N +G K V + + + P R G VFVKNL + VD + L F KFG
Sbjct: 87 NFKRVGDKCVRLMWQQRDPALRYSGNG---------NVFVKNLEKDVDSKSLHDIFTKFG 137
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNG---------------RMIQHNS 200
+I+ K+++DE GKS+G+GF+ F +A+ AI++MNG I+ N+
Sbjct: 138 SILSCKVMQDEEGKSRGYGFVHFKDETSAKDAIVKMNGAADHASEDKKALYVANFIRRNA 197
Query: 201 TFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSL 260
+L A +++ + +N E+ FA+FG ITS++
Sbjct: 198 RLAALV-------------------ANFTNVYIKQVLPTVNKDVIEKFFAKFGGITSAAA 238
Query: 261 VSDKH---IGFIEFIMPKHATHAVSTMNGH 287
DK F F A AV M+ H
Sbjct: 239 CKDKSGRVFAFCNFEKHDDAVKAVEAMHDH 268
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 72/281 (25%), Positives = 126/281 (44%), Gaps = 35/281 (12%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNG- 97
V NLE VD+++L + F KFG++ +V +++ +SRG+ + F AK A V+MNG
Sbjct: 117 VKNLEKDVDSKSLHDIFTKFGSILSCKVMQDEEGKSRGYGFVHFKDETSAKDAIVKMNGA 176
Query: 98 --HLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
H K + ++ R + V++K ++ TV+++ ++ F KFG
Sbjct: 177 ADHASEDKKALYVANFIRRNARLAALVANFT-----NVYIKQVLPTVNKDVIEKFFAKFG 231
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
I +D++G+ F F F + A KA+ M+ I + PG+K++
Sbjct: 232 GITSAAACKDKSGRV--FAFCNFEKHDDAVKAVEAMHDHHIDGITA--------PGEKLY 281
Query: 216 PKVKPP------------LLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSS-LVS 262
+ P + A N ++V N ++ ELF +G + S +VS
Sbjct: 282 VQRAQPRSERLIALRQKYMQHQALGNNLYVRNFDPEFTGADLLELFKEYGEVKSCRVMVS 341
Query: 263 DKHI----GFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299
+ + GF+ F A A+ MNG + KPL V ++
Sbjct: 342 ESGVSRGFGFVSFSNADEANAALREMNGRMLNGKPLIVNIA 382
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 87/178 (48%), Gaps = 10/178 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+++ + P+V+ + F KFG + ++K+ R FA F +A KA M+
Sbjct: 209 VYIKQVLPTVNKDVIEKFFAKFGGITSAAACKDKS--GRVFAFCNFEKHDDAVKAVEAMH 266
Query: 97 GHLIG--SKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNL-VETVDEE----ELKS 149
H I + P +V+ + RS+ + ++Y + + NL V D E +L
Sbjct: 267 DHHIDGITAPGEKLYVQ-RAQPRSERLIALRQKYMQHQALGNNLYVRNFDPEFTGADLLE 325
Query: 150 HFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
F ++G + +++ E+G S+GFGF+ F + A A+ EMNGRM+ V++A+
Sbjct: 326 LFKEYGEVKSCRVMVSESGVSRGFGFVSFSNADEANAALREMNGRMLNGKPLIVNIAQ 383
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 44/79 (55%)
Query: 35 NELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVE 94
N L+V N +P L+ FK++G ++ RV +++ SRGF + F+ EA A E
Sbjct: 307 NNLYVRNFDPEFTGADLLELFKEYGEVKSCRVMVSESGVSRGFGFVSFSNADEANAALRE 366
Query: 95 MNGHLIGSKPVIITFVELK 113
MNG ++ KP+I+ + +
Sbjct: 367 MNGRMLNGKPLIVNIAQRR 385
>gi|328773103|gb|EGF83140.1| hypothetical protein BATDEDRAFT_34010 [Batrachochytrium
dendrobatidis JAM81]
Length = 718
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 77/278 (27%), Positives = 143/278 (51%), Gaps = 21/278 (7%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL ++D++AL + F FG + ++A + + S G + + T A+ A +NG
Sbjct: 157 IKNLHTTIDHKALHDTFSAFGKILSCKIAMD-GERSLGHGFVHYETMEMAENAIKHVNGM 215
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ + V +V L ++ + EEK+ K ++VKN+ +VD++ + F FG +
Sbjct: 216 LLNDQQV---YVGLHISKKERSSTIEEKRSKFTNIYVKNIDASVDQKAFEEMFHPFGTTV 272
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLA--------EIVP 210
++ DE G SK FGF+ + +++ A +A+ EM+ + I +V A E+
Sbjct: 273 SCVLMVDEEGNSKEFGFVNYENHEDARRAVEEMHEKEIGGKQIYVGRAQKKFEREEEL-- 330
Query: 211 GKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------K 264
++ + K++ L + +FV N+ +I++ + + F+ FG ITS+ ++ D K
Sbjct: 331 -RRQYEKIREEKLSKYQGVNLFVKNIDESIDDEKLRQEFSVFGAITSTKIMVDEKTGISK 389
Query: 265 HIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ F P AT AV+ MN + +KP+ V L+ K
Sbjct: 390 GFGFVCFSNPDEATKAVTEMNNRMLANKPIYVALAQRK 427
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 73/257 (28%), Positives = 117/257 (45%), Gaps = 25/257 (9%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L++ +LEPSV L F G + +RV R+ S G+ I + A+A++A +
Sbjct: 67 LYIGDLEPSVTEAMLFEVFNMVGPVASIRVCRDAVTRRSLGYGYINYLDIADAERALDTL 126
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N + PV I + P R G +F+KNL T+D + L F FG
Sbjct: 127 NYTTVRGNPVRIMWSNRDPALRRAGTG---------NIFIKNLHTTIDHKALHDTFSAFG 177
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
I+ KI D +S G GF+ + + + AE AI +NG ++ +V L +
Sbjct: 178 KILSCKIAMDGE-RSLGHGFVHYETMEMAENAIKHVNGMLLNDQQVYVGL-------HIS 229
Query: 216 PKVKPPLLQPARK--NKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGF 268
K + ++ R I+V N+ ++++ FEE+F FGT S L+ D K GF
Sbjct: 230 KKERSSTIEEKRSKFTNIYVKNIDASVDQKAFEEMFHPFGTTVSCVLMVDEEGNSKEFGF 289
Query: 269 IEFIMPKHATHAVSTMN 285
+ + + A AV M+
Sbjct: 290 VNYENHEDARRAVEEMH 306
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 65/200 (32%), Positives = 103/200 (51%), Gaps = 22/200 (11%)
Query: 23 RSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVF 82
RS+ K K ++V N++ SVD +A F FGT + ++ S+ F + +
Sbjct: 233 RSSTIEEKRSKFTNIYVKNIDASVDQKAFEEMFHPFGTTVSCVLMVDEEGNSKEFGFVNY 292
Query: 83 NTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEE---KQYKKDK------- 132
+A++A EM+ IG K + + G+ K EE +QY+K +
Sbjct: 293 ENHEDARRAVEEMHEKEIGGKQIYV-------GRAQKKFEREEELRRQYEKIREEKLSKY 345
Query: 133 ----VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKA 187
+FVKN+ E++D+E+L+ F FG I KI+ DE G SKGFGF+ F + A KA
Sbjct: 346 QGVNLFVKNIDESIDDEKLRQEFSVFGAITSTKIMVDEKTGISKGFGFVCFSNPDEATKA 405
Query: 188 IIEMNGRMIQHNSTFVSLAE 207
+ EMN RM+ + +V+LA+
Sbjct: 406 VTEMNNRMLANKPIYVALAQ 425
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 79/175 (45%), Gaps = 16/175 (9%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEM 191
+++ +L +V E L F G + +++ RD +S G+G+I + AE+A+ +
Sbjct: 67 LYIGDLEPSVTEAMLFEVFNMVGPVASIRVCRDAVTRRSLGYGYINYLDIADAERALDTL 126
Query: 192 NGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFAR 251
N ++ N ++ + P L+ A IF+ NL + I++ + F+
Sbjct: 127 NYTTVRGNPV-----------RIMWSNRDPALRRAGTGNIFIKNLHTTIDHKALHDTFSA 175
Query: 252 FGTITSSSLVSDKHI----GFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
FG I S + D GF+ + + A +A+ +NG + + + V L +K
Sbjct: 176 FGKILSCKIAMDGERSLGHGFVHYETMEMAENAIKHVNGMLLNDQQVYVGLHISK 230
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKK 90
Y+ L V N++ S+D++ L EF FG + ++ + K S+GF + F+ P EA K
Sbjct: 345 YQGVNLFVKNIDESIDDEKLRQEFSVFGAITSTKIMVDEKTGISKGFGFVCFSNPDEATK 404
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSK 119
A EMN ++ +KP+ + + K +R +
Sbjct: 405 AVTEMNNRMLANKPIYVALAQRKEVRRQQ 433
>gi|308499747|ref|XP_003112059.1| CRE-PAB-1 protein [Caenorhabditis remanei]
gi|308268540|gb|EFP12493.1| CRE-PAB-1 protein [Caenorhabditis remanei]
Length = 695
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 83/303 (27%), Positives = 134/303 (44%), Gaps = 52/303 (17%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVAR-NKNDESRGFAIIVFNTPAE--- 87
Y L+V +L P V+ L +F G + +RV R N S G+A + F PA+
Sbjct: 29 YTMASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADGKS 88
Query: 88 -------------AKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVF 134
A++A MN + KP+ I + + P R G +F
Sbjct: 89 FFQFMSFLTFLITAERAMDTMNFEALHGKPMRIMWSQRDPAMRRSGAG---------NIF 139
Query: 135 VKNLVETVDEEELKSHFIKFGNIIEVKIVR-----------DENGKSKGFGFIQFFSYKA 183
+KNL + +D + + F FGNI+ K+ D+ G SKG+GF+ F + +A
Sbjct: 140 IKNLDKVIDNKSIYDTFSLFGNILSCKVTFPIEHLKTVVAIDDEGSSKGYGFVHFETEEA 199
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVK--PPLLQPARK-NKIFVANLPSNI 240
A+ AI ++NG ++ FV K P+ + L + A+K ++V N +
Sbjct: 200 AQNAIQKVNGMLLAGKKVFVG--------KFQPRAQRNRELGETAKKFTNVYVKNFGDHY 251
Query: 241 NNSEFEELFARFGTITSSSLVS----DKHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
N E+LFA++G ITS +++ K GF+ F P+ A AV +N LK+
Sbjct: 252 NKETLEKLFAKYGAITSCDVMTSDGKSKGFGFVAFAQPEEAEAAVQALNDSAVDGSDLKL 311
Query: 297 TLS 299
+
Sbjct: 312 HVC 314
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 88/339 (25%), Positives = 155/339 (45%), Gaps = 59/339 (17%)
Query: 5 GKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDV 64
GK + W + D R + N + + NL+ +DN+++ + F FG +
Sbjct: 116 GKPMRIMWSQ---RDPAMRRSGAGN-------IFIKNLDKVIDNKSIYDTFSLFGNILSC 165
Query: 65 RV-----------ARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELK 113
+V A + S+G+ + F T A+ A ++NG L+ K V + + +
Sbjct: 166 KVTFPIEHLKTVVAIDDEGSSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVG--KFQ 223
Query: 114 P-GQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKG 172
P QR++ +G K++ V+VKN + ++E L+ F K+G I ++ + GKSKG
Sbjct: 224 PRAQRNRELGETAKKFTN--VYVKNFGDHYNKETLEKLFAKYGAITSCDVMTSD-GKSKG 280
Query: 173 FGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----------AEIVPGKKVFPKVKPPL 222
FGF+ F + AE A+ +N + + + + AE+ KK + K
Sbjct: 281 FGFVAFAQPEEAEAAVQALNDSAVDGSDLKLHVCRAQKKSERHAEL---KKKHEQHKVER 337
Query: 223 LQPARKNKIFVANLPSNINNSEFEELFARFGTITSS--------------SLVSD----- 263
+Q + ++V NL ++++ ++ F FG ITS+ +++D
Sbjct: 338 MQKYQGVNLYVKNLDESVDDEALKKQFENFGNITSAKVGLVPLEFFISLFQVMTDENGRS 397
Query: 264 KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
K GF+ F P+ AT AV+ MN + SKPL V L+ K
Sbjct: 398 KGFGFVCFEKPEEATTAVTEMNSKMVCSKPLYVALAQRK 436
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 54/107 (50%), Gaps = 14/107 (13%)
Query: 27 ENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVA--------------RNKND 72
E + Y+ L+V NL+ SVD++AL +F+ FG + +V ++N
Sbjct: 336 ERMQKYQGVNLYVKNLDESVDDEALKKQFENFGNITSAKVGLVPLEFFISLFQVMTDENG 395
Query: 73 ESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSK 119
S+GF + F P EA A EMN ++ SKP+ + + K +R++
Sbjct: 396 RSKGFGFVCFEKPEEATTAVTEMNSKMVCSKPLYVALAQRKEDRRAQ 442
>gi|339899318|ref|XP_001469326.2| putative polyadenylate-binding protein 1 [Leishmania infantum
JPCM5]
gi|398023903|ref|XP_003865113.1| polyadenylate-binding protein 1, putative [Leishmania donovani]
gi|321398770|emb|CAM72432.2| putative polyadenylate-binding protein 1 [Leishmania infantum
JPCM5]
gi|322503349|emb|CBZ38434.1| polyadenylate-binding protein 1, putative [Leishmania donovani]
Length = 560
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 78/270 (28%), Positives = 124/270 (45%), Gaps = 47/270 (17%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
++V +L+ +++ L+ FK FGT+ +VRV R+ S G+ + F+ A+KA M
Sbjct: 27 IYVGDLDAAINEPQLVELFKPFGTILNVRVCRDIITQRSLGYGYVNFDNHDSAEKAIESM 86
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N +G K V + + + P R G VFVKNL + VD + L F KFG
Sbjct: 87 NFKRVGDKCVRLMWQQRDPALRYSGNG---------NVFVKNLEKDVDSKSLHDIFTKFG 137
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNG---------------RMIQHNS 200
+I+ K+++DE GKS+G+GF+ F +A+ AI++MNG I+ N+
Sbjct: 138 SILSCKVMQDEEGKSRGYGFVHFKDETSAKDAIVKMNGAADHASEDKKALYVANFIRRNA 197
Query: 201 TFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSL 260
+L A +++ + +N E+ FA+FG ITS++
Sbjct: 198 RLAALV-------------------ANFTNVYIKQVLPTVNKEVIEKFFAKFGGITSAAA 238
Query: 261 VSDKH---IGFIEFIMPKHATHAVSTMNGH 287
DK F F A AV M+ H
Sbjct: 239 CKDKSGRVFAFCNFEKHDDAVKAVEAMHDH 268
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 70/281 (24%), Positives = 125/281 (44%), Gaps = 35/281 (12%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNG- 97
V NLE VD+++L + F KFG++ +V +++ +SRG+ + F AK A V+MNG
Sbjct: 117 VKNLEKDVDSKSLHDIFTKFGSILSCKVMQDEEGKSRGYGFVHFKDETSAKDAIVKMNGA 176
Query: 98 --HLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
H K + ++ R + V++K ++ TV++E ++ F KFG
Sbjct: 177 ADHASEDKKALYVANFIRRNARLAALVANFT-----NVYIKQVLPTVNKEVIEKFFAKFG 231
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
I +D++G+ F F F + A KA+ M+ I + PG+K++
Sbjct: 232 GITSAAACKDKSGRV--FAFCNFEKHDDAVKAVEAMHDHHIDGITA--------PGEKLY 281
Query: 216 PKVKPP------------LLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLV-- 261
+ P + + N ++V N ++ ELF +G + S ++
Sbjct: 282 VQRAQPRSERLIALRQKYMQHQSLGNNLYVRNFDPEFTGADLLELFKEYGEVKSCRVMVS 341
Query: 262 ---SDKHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299
+ + GF+ F A A+ MNG + KPL V ++
Sbjct: 342 ESGASRGFGFVSFSNADEANAALREMNGRMLNGKPLIVNIA 382
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 85/177 (48%), Gaps = 8/177 (4%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+++ + P+V+ + + F KFG + ++K+ R FA F +A KA M+
Sbjct: 209 VYIKQVLPTVNKEVIEKFFAKFGGITSAAACKDKS--GRVFAFCNFEKHDDAVKAVEAMH 266
Query: 97 GHLIG--SKPVIITFVELKPGQRSKPVGPEEK----QYKKDKVFVKNLVETVDEEELKSH 150
H I + P +V+ + + + +K Q + ++V+N +L
Sbjct: 267 DHHIDGITAPGEKLYVQRAQPRSERLIALRQKYMQHQSLGNNLYVRNFDPEFTGADLLEL 326
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
F ++G + +++ E+G S+GFGF+ F + A A+ EMNGRM+ V++A+
Sbjct: 327 FKEYGEVKSCRVMVSESGASRGFGFVSFSNADEANAALREMNGRMLNGKPLIVNIAQ 383
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 44/79 (55%)
Query: 35 NELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVE 94
N L+V N +P L+ FK++G ++ RV +++ SRGF + F+ EA A E
Sbjct: 307 NNLYVRNFDPEFTGADLLELFKEYGEVKSCRVMVSESGASRGFGFVSFSNADEANAALRE 366
Query: 95 MNGHLIGSKPVIITFVELK 113
MNG ++ KP+I+ + +
Sbjct: 367 MNGRMLNGKPLIVNIAQRR 385
>gi|222629794|gb|EEE61926.1| hypothetical protein OsJ_16667 [Oryza sativa Japonica Group]
Length = 1011
Score = 111 bits (277), Expect = 5e-22, Method: Composition-based stats.
Identities = 86/294 (29%), Positives = 141/294 (47%), Gaps = 24/294 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V NL SV + LI F FG + RV + S+G+ + ++ P A +A M
Sbjct: 298 LYVGNLPASVGSHKLIELFLPFGQIVRSRVVDDCFTGLSQGYGFVKYSDPRCASEAIKRM 357
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
NG L+ + + + P P K+ K++V NL +++ + L F+ FG
Sbjct: 358 NGRLVEGRALEVRVAGF-PSSEDNSQQPS-KETDMAKLYVCNLSLSMNTDRLIHLFLPFG 415
Query: 156 NIIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHN----------STFVS 204
+ K+ +D G SKG+GF+Q+ S A +A+I +NGR++ ST +
Sbjct: 416 EVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIHLNGRLVDGRKIEVRVSGIPSTLPN 475
Query: 205 LAEIVPGKKVFPKVKPPLLQPARK----NKIFVANLPSNINNSEFEELFARFGTITSSSL 260
A P V+ P K + ++V N+PS+I+ + ELF FG IT + +
Sbjct: 476 SAVESPSTTRNSAVESPSTTRTVKEIDMSNLYVCNMPSSIDTKKLVELFLPFGKITHARV 535
Query: 261 VSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKPGVSIT 308
V+D K GFI+F + AT A++ MNG + + + V ++G P SI+
Sbjct: 536 VADPDTFSAKGYGFIKFTDSESATKAIAAMNGALVGGEMIIVRVAGLSPSASIS 589
Score = 87.8 bits (216), Expect = 6e-15, Method: Composition-based stats.
Identities = 61/267 (22%), Positives = 121/267 (45%), Gaps = 11/267 (4%)
Query: 35 NELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKND-ESRGFAIIVFNTPAEAKKARV 93
+ L+V N+ S+D + L+ F FG + RV + + ++G+ I F A KA
Sbjct: 504 SNLYVCNMPSSIDTKKLVELFLPFGKITHARVVADPDTFSAKGYGFIKFTDSESATKAIA 563
Query: 94 EMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIK 153
MNG L+G + +I+ L P V + K ++++ NL ++ +++ + F
Sbjct: 564 AMNGALVGGEMIIVRVAGLSPSASISAV-QTTQDINKSRLYITNLPRSMTADKMVNLFAP 622
Query: 154 FGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKK 213
FG I +V + + + + + +A KA+ M+G M++ V +E+
Sbjct: 623 FGQITKVLMNLE-------YSLVWYADAPSATKAVQHMDGYMVEGKRLVVKRSELCTTNA 675
Query: 214 VFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKHIGFIEFIM 273
KP ++ ++V +PS++ +F +LF FG + + + + G + F
Sbjct: 676 SQAGGKP--IKEIDMANLYVGRVPSSLTEDQFIDLFRPFGRVVQARMFRFQRYGMVRFDN 733
Query: 274 PKHATHAVSTMNGHVFKSKPLKVTLSG 300
P A A+ ++G+ L V ++G
Sbjct: 734 PSCAAAAIDHLDGYQIGGSILAVRVAG 760
Score = 74.3 bits (181), Expect = 7e-11, Method: Composition-based stats.
Identities = 67/311 (21%), Positives = 135/311 (43%), Gaps = 23/311 (7%)
Query: 34 ENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARV 93
++ L++ NL S+ ++N F FG + V + N E ++++ + A KA
Sbjct: 599 KSRLYITNLPRSMTADKMVNLFAPFGQITKVLM----NLE---YSLVWYADAPSATKAVQ 651
Query: 94 EMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIK 153
M+G+++ K +++ EL S+ G K+ ++V + ++ E++ F
Sbjct: 652 HMDGYMVEGKRLVVKRSELCTTNASQAGGKPIKEIDMANLYVGRVPSSLTEDQFIDLFRP 711
Query: 154 FGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKK 213
FG +++ ++ R + +G ++F + A AI ++G I + V +A +
Sbjct: 712 FGRVVQARMFRFQR-----YGMVRFDNPSCAAAAIDHLDGYQIGGSILAVRVAGLPAESN 766
Query: 214 VFPKVKPPLLQPARKNKI-----FVANLPSNINNSEFEELFARFGTITSSSLVSDKH--- 265
+ + +I +V++LPS +NN +LF G IT + +V +++
Sbjct: 767 AAKGALTSQMSSNEQGQIDMTNLYVSHLPSYVNNERLIDLFLPCGQITQAKVVVERYTGV 826
Query: 266 ---IGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKPGVSITNPTKAPKKPAYIDE 322
GF++F A A++ MNG+ L+V ++G P + D
Sbjct: 827 SKGFGFVKFADAYSAAVALTHMNGYPLDGHVLEVRIAGVHPDAMSSYMAHFYSHFTMHDP 886
Query: 323 VKNVIGIKVQY 333
K +GI Y
Sbjct: 887 AKAAVGIPTSY 897
Score = 49.7 bits (117), Expect = 0.002, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 47/84 (55%), Gaps = 6/84 (7%)
Query: 223 LQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKH 276
L+ ++V NLP+++ + + ELF FG I S +V D + GF+++ P+
Sbjct: 290 LKEVDNTNLYVGNLPASVGSHKLIELFLPFGQIVRSRVVDDCFTGLSQGYGFVKYSDPRC 349
Query: 277 ATHAVSTMNGHVFKSKPLKVTLSG 300
A+ A+ MNG + + + L+V ++G
Sbjct: 350 ASEAIKRMNGRLVEGRALEVRVAG 373
>gi|50547639|ref|XP_501289.1| YALI0C00539p [Yarrowia lipolytica]
gi|74689742|sp|Q6CDH3.1|PABP_YARLI RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|49647156|emb|CAG81584.1| YALI0C00539p [Yarrowia lipolytica CLIB122]
Length = 629
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 83/290 (28%), Positives = 134/290 (46%), Gaps = 37/290 (12%)
Query: 17 SDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESR 75
S+++G++ ++ +N L+V L+PSV L F G + VRV R+ S
Sbjct: 33 SEEKGSKEDQGDNA-----SLYVGELDPSVTEAMLFEIFNPIGPVTSVRVCRDAITRRSL 87
Query: 76 GFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFV 135
G+A + F+ A+ +A E+N I +P I + + P R G +++
Sbjct: 88 GYAYVNFHNQADGIRALEELNYSPIKERPCRIMWSQRDPALRKTGAG---------NIYI 138
Query: 136 KNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRM 195
KNL +D + L F FG I+ KI DE G S+GFGF+ + S ++AE AI +NG +
Sbjct: 139 KNLDPAIDNKALHDTFSAFGQILSCKIATDEFGNSRGFGFVHYESAESAESAIQHVNGML 198
Query: 196 IQHNSTFVSLAEIVPGKKVFPKV-KPPLLQPARKNK-----IFVANLPSNINNSEFEELF 249
+ FV P V K +Q + K +F+ NL + I +EFEEL
Sbjct: 199 LNDKKVFVG-----------PHVPKSDRMQSFEEQKNSFTNVFIKNLGTEITEAEFEELV 247
Query: 250 ARFGTITSSSLVSDKH-----IGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
+FG +S L ++ GF+++ A A+ ++ FK L
Sbjct: 248 NKFGETSSVHLSTNDEGKPTGFGFVDYKEHDVAVKAIDGLSETEFKGNKL 297
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 80/279 (28%), Positives = 135/279 (48%), Gaps = 19/279 (6%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+++ NL+P++DN+AL + F FG + ++A ++ SRGF + + + A+ A +N
Sbjct: 136 IYIKNLDPAIDNKALHDTFSAFGQILSCKIATDEFGNSRGFGFVHYESAESAESAIQHVN 195
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G L+ K V FV + + EE++ VF+KNL + E E + KFG
Sbjct: 196 GMLLNDKKV---FVGPHVPKSDRMQSFEEQKNSFTNVFIKNLGTEITEAEFEELVNKFGE 252
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLA--------EI 208
V + ++ GK GFGF+ + + A KAI ++ + N F A E+
Sbjct: 253 TSSVHLSTNDEGKPTGFGFVDYKEHDVAVKAIDGLSETEFKGNKLFAGRAKKKYERADEL 312
Query: 209 VPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----- 263
+K + + L + +++ NL I++ + FA GTITS+ ++ D
Sbjct: 313 ---RKQYEASRLEKLNKYQGVNLYIKNLDDTIDDDKLRAEFAPHGTITSAKVMVDEAGKS 369
Query: 264 KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
K GF+ + P+ AT AV+ MN + KPL V L+ K
Sbjct: 370 KGFGFVCYSSPEEATKAVTEMNHRLVAGKPLYVVLAQRK 408
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 51/88 (57%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L++ NL+ ++D+ L EF GT+ +V ++ +S+GF + +++P EA KA
Sbjct: 327 YQGVNLYIKNLDDTIDDDKLRAEFAPHGTITSAKVMVDEAGKSKGFGFVCYSSPEEATKA 386
Query: 92 RVEMNGHLIGSKPVIITFVELKPGQRSK 119
EMN L+ KP+ + + K +RS+
Sbjct: 387 VTEMNHRLVAGKPLYVVLAQRKDVRRSQ 414
>gi|400260922|pdb|4F02|A Chain A, Crystal Structure Of The Pabp-Binding Site Of Eif4g In
Complex With Rrm1-2 Of Pabp And Poly(A)
gi|400260925|pdb|4F02|D Chain D, Crystal Structure Of The Pabp-Binding Site Of Eif4g In
Complex With Rrm1-2 Of Pabp And Poly(A)
Length = 213
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 64/173 (36%), Positives = 94/173 (54%), Gaps = 11/173 (6%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAER 72
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KPV I + + P R VG +F+KNL +++D + L
Sbjct: 73 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVG---------NIFIKNLDKSIDNKALYDT 123
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFV 203
F FGNI+ K+V DENG SKG+GF+ F + +AAE+AI +MNG ++ FV
Sbjct: 124 FSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 175
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 81/183 (44%), Gaps = 23/183 (12%)
Query: 120 PVG---PEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGF 175
P+G P Y ++V +L V E L F G I+ +++ RD +S G+ +
Sbjct: 2 PLGSMNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAY 61
Query: 176 IQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGK--KVFPKVKPPLLQPARKNKIFV 233
+ F AE+A+ MN +++ GK ++ + P L+ + IF+
Sbjct: 62 VNFQQPADAERALDTMN-------------FDVIKGKPVRIMWSQRDPSLRKSGVGNIFI 108
Query: 234 ANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVF 289
NL +I+N + F+ FG I S +V D K GF+ F + A A+ MNG +
Sbjct: 109 KNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLL 168
Query: 290 KSK 292
+
Sbjct: 169 NDR 171
>gi|91805911|gb|ABE65684.1| polyadenylate-binding protein [Arabidopsis thaliana]
Length = 267
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 75/238 (31%), Positives = 121/238 (50%), Gaps = 16/238 (6%)
Query: 28 NNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAE 87
+N++ + V NL+ S+DN+ L + F FG + +VAR+ + S+G+ + F +
Sbjct: 24 SNRMSGRGNVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDASGVSKGYGFVQFYSDLS 83
Query: 88 AKKARVEMNGHLIGSKPV-IITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEE 146
A NG LI ++ + + FV +S+ V+VKNLVET + +
Sbjct: 84 VYTACNFHNGTLIRNQHIHVCPFVSRGQWDKSRVF---------TNVYVKNLVETATDAD 134
Query: 147 LKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLA 206
LK F +FG I +++D GKS+ FGF+ F +AA AI +MNG ++ V A
Sbjct: 135 LKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAIEKMNGVVVDEKELHVGRA 194
Query: 207 EIVPGKKVFPKVKPPLLQPARKNK------IFVANLPSNINNSEFEELFARFGTITSS 258
+ + K K L + R K ++V NL +++N++ EELF+ FGTITS
Sbjct: 195 QRKTNRTEDLKAKFELEKIIRDMKTRKGMNLYVKNLDDSVDNTKLEELFSEFGTITSC 252
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 67/211 (31%), Positives = 98/211 (46%), Gaps = 32/211 (15%)
Query: 95 MNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKF 154
+N + KP+ I F E P R G VFVKNL E++D ++L F F
Sbjct: 4 LNYCKLKGKPMRIMFSERDPSNRMSGRG---------NVFVKNLDESIDNKQLCDMFSAF 54
Query: 155 GNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQ----HNSTFVSLAEIVP 210
G ++ K+ RD +G SKG+GF+QF+S + A NG +I+ H FVS +
Sbjct: 55 GKVLSCKVARDASGVSKGYGFVQFYSDLSVYTACNFHNGTLIRNQHIHVCPFVSRGQW-D 113
Query: 211 GKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KH 265
+VF V +V NL +++ + LF FG ITS+ ++ D +
Sbjct: 114 KSRVFTNV-------------YVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSRR 160
Query: 266 IGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
GF+ F + A A+ MNG V K L V
Sbjct: 161 FGFVNFEKAEAAVTAIEKMNGVVVDEKELHV 191
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 67/148 (45%), Gaps = 10/148 (6%)
Query: 22 ARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIV 81
+R + ++V+ ++V NL + + L F +FG + V ++ +SR F +
Sbjct: 108 SRGQWDKSRVF--TNVYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFVN 165
Query: 82 FNTPAEAKKARVEMNGHLIGSKPVIITFVE--------LKPGQRSKPVGPEEKQYKKDKV 133
F A A +MNG ++ K + + + LK + + + K K +
Sbjct: 166 FEKAEAAVTAIEKMNGVVVDEKELHVGRAQRKTNRTEDLKAKFELEKIIRDMKTRKGMNL 225
Query: 134 FVKNLVETVDEEELKSHFIKFGNIIEVK 161
+VKNL ++VD +L+ F +FG I K
Sbjct: 226 YVKNLDDSVDNTKLEELFSEFGTITSCK 253
>gi|71745214|ref|XP_827237.1| polyadenylate-binding protein 1 [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|70831402|gb|EAN76907.1| polyadenylate-binding protein 1, putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
gi|261331451|emb|CBH14445.1| PABP1 [Trypanosoma brucei gambiense DAL972]
Length = 566
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 74/249 (29%), Positives = 124/249 (49%), Gaps = 18/249 (7%)
Query: 20 EGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFA 78
+G S K + L+V +L+P+++ L++ FK +GT+ +VRV R+ S G+
Sbjct: 6 QGVPSGPSATKPLQVASLYVGDLDPAINEPQLVDIFKPYGTILNVRVCRDIITQRSLGYG 65
Query: 79 IIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNL 138
+ ++ A KA E+N +G K + I + + P R G +FVKNL
Sbjct: 66 YVNYDDVNSASKAMEELNFKRVGEKCIRIMWQQRDPALRYSGSG---------NIFVKNL 116
Query: 139 VETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQH 198
E VD EL F KFG I+ K++ DE+GKS+G+GF+ F AA+ AI +MNG
Sbjct: 117 KEEVDSRELSLIFKKFGEILSCKVMDDESGKSRGYGFVHFKDDDAAKAAIEKMNGDKEHA 176
Query: 199 NSTFVSL--AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTIT 256
++ +L A + + A +++ L ++ E+ F++FG IT
Sbjct: 177 DADKAALYVANFIRRNARLAALV------ANFTNVYIKQLLPTVDKDVIEKFFSKFGGIT 230
Query: 257 SSSLVSDKH 265
S+++ DK+
Sbjct: 231 SAAICKDKN 239
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 76/283 (26%), Positives = 128/283 (45%), Gaps = 35/283 (12%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ V NL+ VD++ L FKKFG + +V +++ +SRG+ + F AK A +MN
Sbjct: 111 IFVKNLKEEVDSRELSLIFKKFGEILSCKVMDDESGKSRGYGFVHFKDDDAAKAAIEKMN 170
Query: 97 G---HLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIK 153
G H K + ++ R + V++K L+ TVD++ ++ F K
Sbjct: 171 GDKEHADADKAALYVANFIRRNARLAALVANFTN-----VYIKQLLPTVDKDVIEKFFSK 225
Query: 154 FGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKK 213
FG I I +D+NG++ F F F + A KAI H+ + + PG+K
Sbjct: 226 FGGITSAAICKDKNGRA--FAFCNFEKHDDAVKAI------EASHDQEVEGVTQ--PGEK 275
Query: 214 VFPKVKPP----LLQPARK--------NKIFVANLPSNINNSEFEELFARFGTITSSSLV 261
++ + P L+ +K N ++V N + + ELF +G I S ++
Sbjct: 276 LYVQRAQPRSERLIALRQKYMQCQSLGNNLYVRNFDAEFTEKDLNELFKEYGVIRSCRVM 335
Query: 262 SD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299
+D + GF+ F A A+ MNG + KPL V ++
Sbjct: 336 TDANGISRGFGFVSFENADQANAALREMNGRMLNGKPLVVNIA 378
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 87/177 (49%), Gaps = 8/177 (4%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA-RVEM 95
+++ L P+VD + F KFG + + ++KN R FA F +A KA
Sbjct: 205 VYIKQLLPTVDKDVIEKFFSKFGGITSAAICKDKN--GRAFAFCNFEKHDDAVKAIEASH 262
Query: 96 NGHLIG-SKPVIITFVELKPGQRSKPVGPEEK----QYKKDKVFVKNLVETVDEEELKSH 150
+ + G ++P +V+ + + + +K Q + ++V+N E++L
Sbjct: 263 DQEVEGVTQPGEKLYVQRAQPRSERLIALRQKYMQCQSLGNNLYVRNFDAEFTEKDLNEL 322
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
F ++G I +++ D NG S+GFGF+ F + A A+ EMNGRM+ V++A+
Sbjct: 323 FKEYGVIRSCRVMTDANGISRGFGFVSFENADQANAALREMNGRMLNGKPLVVNIAQ 379
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 41/79 (51%)
Query: 35 NELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVE 94
N L+V N + + L FK++G +R RV + N SRGF + F +A A E
Sbjct: 303 NNLYVRNFDAEFTEKDLNELFKEYGVIRSCRVMTDANGISRGFGFVSFENADQANAALRE 362
Query: 95 MNGHLIGSKPVIITFVELK 113
MNG ++ KP+++ + +
Sbjct: 363 MNGRMLNGKPLVVNIAQRR 381
>gi|294892363|ref|XP_002774026.1| Polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
gi|239879230|gb|EER05842.1| Polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
Length = 636
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 76/261 (29%), Positives = 128/261 (49%), Gaps = 19/261 (7%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L+P V L F G + +RV R+ S G+A + F+ A+A++A +
Sbjct: 36 LYVGDLKPDVTEAMLYEVFNGVGPVASIRVCRDSVTRRSLGYAYVNFHNVADAERALDTL 95
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N I K I + P R VFVKNL +T+D + L F FG
Sbjct: 96 NYSPIRGKQCRIMWSHRDPTLRKA---------GNANVFVKNLDKTIDNKALYDTFSLFG 146
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ D++GKS+G+GF+ F + ++A KAI ++NG MI + +V P +K
Sbjct: 147 NILSCKVATDDDGKSRGYGFVHFENDESAHKAITKLNGMMIGEKAVYVG-----PFQKHA 201
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSE-FEELFARFGTITSSSLVSD---KHIGFIEF 271
+ + +P + +++ +LP + E ++ F FG ITS ++ +D + F+ +
Sbjct: 202 ERAEQHGDEPRKFTNVYIKHLPESWTTEEDVQKAFEEFGKITSVAIQTDRKGRRFAFVNY 261
Query: 272 IMPKHATHAVSTMNGHVFKSK 292
A AV MNG +++
Sbjct: 262 EDFDSAAKAVEAMNGKDMRTQ 282
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 78/301 (25%), Positives = 144/301 (47%), Gaps = 51/301 (16%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
V NL+ ++DN+AL + F FG + +VA + + +SRG+ + F A KA ++NG
Sbjct: 126 VKNLDKTIDNKALYDTFSLFGNILSCKVATDDDGKSRGYGFVHFENDESAHKAITKLNGM 185
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVET-VDEEELKSHFIKFGNI 157
+IG K V + + K +R++ G E +++ V++K+L E+ EE+++ F +FG I
Sbjct: 186 MIGEKAVYVGPFQ-KHAERAEQHGDEPRKFTN--VYIKHLPESWTTEEDVQKAFEEFGKI 242
Query: 158 IEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKV--- 214
V I D G+ F F+ + + +A KA+ MNG+ ++ + EI GK
Sbjct: 243 TSVAIQTDRKGRR--FAFVNYEDFDSAAKAVEAMNGKDMR------TQEEIDAGKGEEES 294
Query: 215 -------FPKVKPPLLQPARKNK-----------------------IFVANLPSNINNSE 244
P+ K + + K + ++V NLP ++++ +
Sbjct: 295 TEEGSDEMPEYKLYVTRAQTKTERSAELRNKFQAKNTEKVGNQSCNLYVKNLPEDVDDEK 354
Query: 245 FEELFARFGTITSSSLVSDKH------IGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTL 298
++F +FG ITS ++ D++ GF+ F A+ M+ ++ KPL V +
Sbjct: 355 LRQMFEQFGEITSPKVMVDENTGVSRGFGFVCFANQADGEKAIQAMHLKLYGGKPLFVAV 414
Query: 299 S 299
+
Sbjct: 415 A 415
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 49/76 (64%), Gaps = 1/76 (1%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAIIEM 191
++VKNL E VD+E+L+ F +FG I K++ DEN G S+GFGF+ F + EKAI M
Sbjct: 341 LYVKNLPEDVDDEKLRQMFEQFGEITSPKVMVDENTGVSRGFGFVCFANQADGEKAIQAM 400
Query: 192 NGRMIQHNSTFVSLAE 207
+ ++ FV++AE
Sbjct: 401 HLKLYGGKPLFVAVAE 416
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDE-SRGFAIIVFNTPAEAKKARVEM 95
L+V NL VD++ L F++FG + +V ++N SRGF + F A+ +KA M
Sbjct: 341 LYVKNLPEDVDDEKLRQMFEQFGEITSPKVMVDENTGVSRGFGFVCFANQADGEKAIQAM 400
Query: 96 NGHLIGSKPVIITFVE 111
+ L G KP+ + E
Sbjct: 401 HLKLYGGKPLFVAVAE 416
>gi|6137350|pdb|1CVJ|A Chain A, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
gi|6137351|pdb|1CVJ|B Chain B, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
gi|6137352|pdb|1CVJ|C Chain C, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
gi|6137353|pdb|1CVJ|D Chain D, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
gi|6137354|pdb|1CVJ|E Chain E, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
gi|6137355|pdb|1CVJ|F Chain F, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
gi|6137356|pdb|1CVJ|G Chain G, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
gi|6137357|pdb|1CVJ|H Chain H, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
Length = 190
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 64/173 (36%), Positives = 94/173 (54%), Gaps = 11/173 (6%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KPV I + + P R VG +F+KNL +++D + L
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVG---------NIFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFV 203
F FGNI+ K+V DENG SKG+GF+ F + +AAE+AI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 79/179 (44%), Gaps = 20/179 (11%)
Query: 121 VGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFF 179
+ P Y ++V +L V E L F G I+ +++ RD +S G+ ++ F
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 180 SYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGK--KVFPKVKPPLLQPARKNKIFVANLP 237
AE+A+ MN +++ GK ++ + P L+ + IF+ NL
Sbjct: 61 QPADAERALDTMN-------------FDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLD 107
Query: 238 SNINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSK 292
+I+N + F+ FG I S +V D K GF+ F + A A+ MNG + +
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 166
>gi|254578926|ref|XP_002495449.1| ZYRO0B11660p [Zygosaccharomyces rouxii]
gi|238938339|emb|CAR26516.1| ZYRO0B11660p [Zygosaccharomyces rouxii]
Length = 587
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 81/269 (30%), Positives = 125/269 (46%), Gaps = 25/269 (9%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+P+V L + F G++ +RV R+ S G+A + FN ++A ++
Sbjct: 42 LYVGELDPTVSEALLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDYEAGRQAIEKL 101
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N I +P I + + P R K G +F+KNL +D + L F FG
Sbjct: 102 NYTPIKGQPCRIMWSQRDPSLRKKGSG---------NIFIKNLHADIDNKALHDTFSVFG 152
Query: 156 NIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKV 214
NI+ KI DE G SKGFGF+ F S +AA +AI +NG ++ +V+ V
Sbjct: 153 NILSCKIATDEVTGNSKGFGFVHFESDEAAREAIDAINGMLLNGQEVYVA-------PHV 205
Query: 215 FPKVKPPLLQPARKN--KIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIG 267
K + L+ A+ N +++ N+ EFEE F + +TS L D + G
Sbjct: 206 SRKDRQSKLEEAKANFTNVYIKNISLETPEQEFEEFFKKVAPVTSVHLEKDSEGKLRGFG 265
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
F+ + A AV +NG F + L V
Sbjct: 266 FVNYETHAGAAKAVEELNGVEFHGQQLHV 294
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 74/277 (26%), Positives = 136/277 (49%), Gaps = 14/277 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
+ + NL +DN+AL + F FG + ++A ++ S+GF + F + A++A +
Sbjct: 130 IFIKNLHADIDNKALHDTFSVFGNILSCKIATDEVTGNSKGFGFVHFESDEAAREAIDAI 189
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
NG L+ + V + + ++SK EE + V++KN+ E+E + F K
Sbjct: 190 NGMLLNGQEVYVAPHVSRKDRQSKL---EEAKANFTNVYIKNISLETPEQEFEEFFKKVA 246
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVP 210
+ V + +D GK +GFGF+ + ++ A KA+ E+NG V A+
Sbjct: 247 PVTSVHLEKDSEGKLRGFGFVNYETHAGAAKAVEELNGVEFHGQQLHVGRAQKKYERQQE 306
Query: 211 GKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS-----DKH 265
++ + + K ++ + +F+ NL +I++ E F+ FGTITS +++ K
Sbjct: 307 LRRQYEQSKLEKMEKYQGVNLFIKNLDDSIDDERLREEFSPFGTITSVKVMTTENGKSKG 366
Query: 266 IGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ F P+ AT A++ N + KPL V ++ K
Sbjct: 367 FGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRK 403
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 56/97 (57%)
Query: 23 RSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVF 82
+S E + Y+ L + NL+ S+D++ L EF FGT+ V+V +N +S+GF + F
Sbjct: 313 QSKLEKMEKYQGVNLFIKNLDDSIDDERLREEFSPFGTITSVKVMTTENGKSKGFGFVCF 372
Query: 83 NTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSK 119
+TP EA KA E N ++ KP+ + + K +RS+
Sbjct: 373 STPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQ 409
>gi|115461392|ref|NP_001054296.1| Os04g0682400 [Oryza sativa Japonica Group]
gi|113565867|dbj|BAF16210.1| Os04g0682400 [Oryza sativa Japonica Group]
Length = 1008
Score = 110 bits (274), Expect = 1e-21, Method: Composition-based stats.
Identities = 86/294 (29%), Positives = 140/294 (47%), Gaps = 24/294 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V NL SV + LI F FG + RV + S+G+ + ++ P A +A M
Sbjct: 295 LYVGNLPASVGSHKLIELFLPFGQIVRSRVVDDCFTGLSQGYGFVKYSDPRCASEAIKRM 354
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
NG L+ + + P P K+ K++V NL +++ + L F+ FG
Sbjct: 355 NGRLVEGTALKVRVTGF-PSSEDNSQQPS-KETDMAKLYVCNLSLSMNTDRLIHLFLPFG 412
Query: 156 NIIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHN----------STFVS 204
+ K+ +D G SKG+GF+Q+ S A +A+I +NGR++ ST +
Sbjct: 413 EVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIHLNGRLVDGRKIEVRVSGIPSTLPN 472
Query: 205 LAEIVPGKKVFPKVKPPLLQPARK----NKIFVANLPSNINNSEFEELFARFGTITSSSL 260
A P V+ P K + ++V N+PS+I+ + ELF FG IT + +
Sbjct: 473 SAVESPSTTRNSAVESPSTTRTVKEIDMSNLYVCNMPSSIDTKKLVELFLPFGKITHARV 532
Query: 261 VSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKPGVSIT 308
V+D K GFI+F + AT A++ MNG + + + V ++G P SI+
Sbjct: 533 VADPDTFSAKGYGFIKFTDSESATKAIAAMNGALVGGEMIIVRVAGLSPSASIS 586
Score = 87.8 bits (216), Expect = 7e-15, Method: Composition-based stats.
Identities = 61/267 (22%), Positives = 121/267 (45%), Gaps = 11/267 (4%)
Query: 35 NELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKND-ESRGFAIIVFNTPAEAKKARV 93
+ L+V N+ S+D + L+ F FG + RV + + ++G+ I F A KA
Sbjct: 501 SNLYVCNMPSSIDTKKLVELFLPFGKITHARVVADPDTFSAKGYGFIKFTDSESATKAIA 560
Query: 94 EMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIK 153
MNG L+G + +I+ L P V + K ++++ NL ++ +++ + F
Sbjct: 561 AMNGALVGGEMIIVRVAGLSPSASISAV-QTTQDINKSRLYITNLPRSMTADKMVNLFAP 619
Query: 154 FGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKK 213
FG I +V + + + + + +A KA+ M+G M++ V +E+
Sbjct: 620 FGQITKVLMNLE-------YSLVWYADAPSATKAVQHMDGYMVEGKRLVVKRSELCTTNA 672
Query: 214 VFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKHIGFIEFIM 273
KP ++ ++V +PS++ +F +LF FG + + + + G + F
Sbjct: 673 SQAGGKP--IKEIDMANLYVGRVPSSLTEDQFIDLFRPFGRVVQARMFRFQRYGMVRFDN 730
Query: 274 PKHATHAVSTMNGHVFKSKPLKVTLSG 300
P A A+ ++G+ L V ++G
Sbjct: 731 PSCAAAAIDHLDGYQIGGSILAVRVAG 757
Score = 73.9 bits (180), Expect = 9e-11, Method: Composition-based stats.
Identities = 67/311 (21%), Positives = 135/311 (43%), Gaps = 23/311 (7%)
Query: 34 ENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARV 93
++ L++ NL S+ ++N F FG + V + N E ++++ + A KA
Sbjct: 596 KSRLYITNLPRSMTADKMVNLFAPFGQITKVLM----NLE---YSLVWYADAPSATKAVQ 648
Query: 94 EMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIK 153
M+G+++ K +++ EL S+ G K+ ++V + ++ E++ F
Sbjct: 649 HMDGYMVEGKRLVVKRSELCTTNASQAGGKPIKEIDMANLYVGRVPSSLTEDQFIDLFRP 708
Query: 154 FGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKK 213
FG +++ ++ R + +G ++F + A AI ++G I + V +A +
Sbjct: 709 FGRVVQARMFRFQR-----YGMVRFDNPSCAAAAIDHLDGYQIGGSILAVRVAGLPAESN 763
Query: 214 VFPKVKPPLLQPARKNKI-----FVANLPSNINNSEFEELFARFGTITSSSLVSDKH--- 265
+ + +I +V++LPS +NN +LF G IT + +V +++
Sbjct: 764 AAKGALTSQMSSNEQGQIDMTNLYVSHLPSYVNNERLIDLFLPCGQITQAKVVVERYTGV 823
Query: 266 ---IGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKPGVSITNPTKAPKKPAYIDE 322
GF++F A A++ MNG+ L+V ++G P + D
Sbjct: 824 SKGFGFVKFADAYSAAVALTHMNGYPLDGHVLEVRIAGVHPDAMSSYMAHFYSHFTMHDP 883
Query: 323 VKNVIGIKVQY 333
K +GI Y
Sbjct: 884 AKAAVGIPTSY 894
Score = 50.1 bits (118), Expect = 0.002, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 6/84 (7%)
Query: 223 LQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKH 276
L+ ++V NLP+++ + + ELF FG I S +V D + GF+++ P+
Sbjct: 287 LKEVDNTNLYVGNLPASVGSHKLIELFLPFGQIVRSRVVDDCFTGLSQGYGFVKYSDPRC 346
Query: 277 ATHAVSTMNGHVFKSKPLKVTLSG 300
A+ A+ MNG + + LKV ++G
Sbjct: 347 ASEAIKRMNGRLVEGTALKVRVTG 370
>gi|340546031|gb|AEK51814.1| cytoplasmic poly(A) binding protein 1 [Heteronotia binoei]
Length = 177
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 60/167 (35%), Positives = 100/167 (59%), Gaps = 4/167 (2%)
Query: 41 NLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLI 100
NL+ S+DN+AL + F FG + +V ++N S+G+ + F T A++A +MNG L+
Sbjct: 2 NLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLL 60
Query: 101 GSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEV 160
+ V + + + +R +G K++ V++KN E +D+E LK F KFG + V
Sbjct: 61 NDRKVFVGRFKSRK-EREAELGARAKEFTN--VYIKNFGEDMDDERLKDLFGKFGPALSV 117
Query: 161 KIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
K++ DE+GKSKGFGF+ F ++ A+KA+ EMNG+ + +V A+
Sbjct: 118 KVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQ 164
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 87/168 (51%), Gaps = 15/168 (8%)
Query: 136 KNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRM 195
KNL +++D + L F FGNI+ K+V DENG SKG+GF+ F + +AAE+AI +MNG +
Sbjct: 1 KNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGML 59
Query: 196 IQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARK--NKIFVANLPSNINNSEFEELFARFG 253
+ FV G+ K + L K +++ N ++++ ++LF +FG
Sbjct: 60 LNDRKVFV-------GRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFG 112
Query: 254 TITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
S +++D K GF+ F + A AV MNG K + V
Sbjct: 113 PALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 160
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 7/87 (8%)
Query: 21 GARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAII 80
GAR+ KE VY + N +D++ L + F KFG V+V +++ +S+GF +
Sbjct: 81 GARA-KEFTNVY------IKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFV 133
Query: 81 VFNTPAEAKKARVEMNGHLIGSKPVII 107
F +A+KA EMNG + K + +
Sbjct: 134 SFERHEDAQKAVDEMNGKELNGKQIYV 160
>gi|428673176|gb|EKX74089.1| polyadenylate-binding protein, putative [Babesia equi]
Length = 663
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 79/276 (28%), Positives = 140/276 (50%), Gaps = 22/276 (7%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ V NL+ S+D +A + F FG + +VA ++N S+G+ + ++T AK+A ++N
Sbjct: 121 IFVKNLDRSIDTKAFYDTFSHFGPILSCKVAMDENGVSKGYGFVHYDTEESAKEAIEKVN 180
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G +IG K V E+ P + + P + ++V+N + DEE LK K+G
Sbjct: 181 GMVIGGKKV-----EVSPFIKKQDRDPASVDVFTN-LYVRNFPVSWDEEALKQFLDKYGE 234
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNS--TFVSLAEIVPGKKV 214
I + I E+GK + F F+ F + A++A+ +NG ++ S V + ++
Sbjct: 235 ITSMMI--KEDGKGRKFAFVNFAEPEMAKEAVEALNGTKLEEGSEPLLVCPHQDKAKRQA 292
Query: 215 FPK------VKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----- 263
F K + + A N +++ NL + + +ELF +FG+ITS ++ D
Sbjct: 293 FLKSQYISGLDGSIASKASSN-LYIKNLDDSFTDESLQELFGQFGSITSCKIMRDASGVS 351
Query: 264 KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299
+ GF+ F P+ AT A++ M+ + K KPL V L+
Sbjct: 352 RGFGFVCFSRPEEATKAIAGMHLKIVKGKPLYVGLA 387
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 79/283 (27%), Positives = 132/283 (46%), Gaps = 33/283 (11%)
Query: 26 KENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNT 84
++N ++Y L+V +L+P V L F G + +RV R+ +S G+A + + +
Sbjct: 22 RDNQQLYNSASLYVGDLQPDVTEAILYEVFNSVGPVSSIRVCRDSITRKSLGYAYVNYYS 81
Query: 85 PAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDE 144
+A+ A +N I P I + P R G +FVKNL ++D
Sbjct: 82 VQDAEAALESLNYIDIKGHPTRIMWSNKDPTLRKSGAG---------NIFVKNLDRSIDT 132
Query: 145 EELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVS 204
+ F FG I+ K+ DENG SKG+GF+ + + ++A++AI ++NG +I
Sbjct: 133 KAFYDTFSHFGPILSCKVAMDENGVSKGYGFVHYDTEESAKEAIEKVNGMVIG------- 185
Query: 205 LAEIVPGKK--VFPKVKPPLLQPARKN---KIFVANLPSNINNSEFEELFARFGTITSSS 259
GKK V P +K PA + ++V N P + + ++ ++G ITS
Sbjct: 186 ------GKKVEVSPFIKKQDRDPASVDVFTNLYVRNFPVSWDEEALKQFLDKYGEITSMM 239
Query: 260 LVSD---KHIGFIEFIMPKHATHAVSTMNGHVFK--SKPLKVT 297
+ D + F+ F P+ A AV +NG + S+PL V
Sbjct: 240 IKEDGKGRKFAFVNFAEPEMAKEAVEALNGTKLEEGSEPLLVC 282
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 96/185 (51%), Gaps = 21/185 (11%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L+V N S D +AL K+G + + + ++ + R FA + F P AK+A +N
Sbjct: 211 LYVRNFPVSWDEEALKQFLDKYGEITSMMI--KEDGKGRKFAFVNFAEPEMAKEAVEALN 268
Query: 97 GHLI--GSKPVIITFVELKPGQ-RSKPVGPEEKQY-----------KKDKVFVKNLVETV 142
G + GS+P+++ P Q ++K + QY +++KNL ++
Sbjct: 269 GTKLEEGSEPLLVC-----PHQDKAKRQAFLKSQYISGLDGSIASKASSNLYIKNLDDSF 323
Query: 143 DEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTF 202
+E L+ F +FG+I KI+RD +G S+GFGF+ F + A KAI M+ ++++ +
Sbjct: 324 TDESLQELFGQFGSITSCKIMRDASGVSRGFGFVCFSRPEEATKAIAGMHLKIVKGKPLY 383
Query: 203 VSLAE 207
V LAE
Sbjct: 384 VGLAE 388
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 47/83 (56%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L++ NL+ S +++L F +FG++ ++ R+ + SRGF + F+ P EA KA M+
Sbjct: 314 LYIKNLDDSFTDESLQELFGQFGSITSCKIMRDASGVSRGFGFVCFSRPEEATKAIAGMH 373
Query: 97 GHLIGSKPVIITFVELKPGQRSK 119
++ KP+ + E K + S+
Sbjct: 374 LKIVKGKPLYVGLAEKKEQRLSR 396
>gi|294940190|ref|XP_002782709.1| polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
gi|239894589|gb|EER14504.1| polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
Length = 716
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 74/254 (29%), Positives = 122/254 (48%), Gaps = 21/254 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+ +L P V L F G + +RV R+ +S G+A I F+ A+A++A +
Sbjct: 50 LYAGDLAPDVTEAVLYEVFNAIGPVASIRVCRDSVTRKSLGYAYINFHNVADAERALDTL 109
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N I +P + + P R G V+VKNL +D + L F FG
Sbjct: 110 NYSPIKGRPCRLMWSHRDPALRRSGAG---------NVYVKNLDRNIDNKALYDTFSLFG 160
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ +GKS+GFGF+ F S ++AE AI ++NG I + +V+ P KK
Sbjct: 161 NILSCKVALTPDGKSRGFGFVHFESDESAEAAIAKLNGMQIGEKTVYVA-----PFKKTA 215
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD---KHIGFIEFI 272
+ P +++ ++P++ N + +E F FG ITS ++ +D + F+ +
Sbjct: 216 ERNDG---TPKNFTNVYIKHIPASWNEEKIKEEFGAFGEITSLAVQTDPKGRRFAFVNYA 272
Query: 273 MPKHATHAVSTMNG 286
+ A AV M+G
Sbjct: 273 EFEQARAAVEEMDG 286
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 88/162 (54%), Gaps = 8/162 (4%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
++V NL+ ++DN+AL + F FG + +VA + +SRGF + F + A+ A ++N
Sbjct: 138 VYVKNLDRNIDNKALYDTFSLFGNILSCKVALTPDGKSRGFGFVHFESDESAEAAIAKLN 197
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G IG K V + + K +R+ K + V++K++ + +EE++K F FG
Sbjct: 198 GMQIGEKTVYVAPFK-KTAERNDGT---PKNFTN--VYIKHIPASWNEEKIKEEFGAFGE 251
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQH 198
I + + D G+ F F+ + ++ A A+ EM+G+ +++
Sbjct: 252 ITSLAVQTDPKGRR--FAFVNYAEFEQARAAVEEMDGKDVRN 291
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 49/75 (65%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMN 192
++VKNL E VD+ ELK F FG + VK++ D+ G S+GFGF+ F +++ A KA+ +M+
Sbjct: 377 LYVKNLGEDVDDAELKKMFEPFGTVTSVKVMVDDKGVSRGFGFVCFSTHEEATKAVTDMH 436
Query: 193 GRMIQHNSTFVSLAE 207
++I +V + E
Sbjct: 437 LKLIGGKPLYVGMHE 451
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 42/75 (56%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L+V NL VD+ L F+ FGT+ V+V + SRGF + F+T EA KA +M+
Sbjct: 377 LYVKNLGEDVDDAELKKMFEPFGTVTSVKVMVDDKGVSRGFGFVCFSTHEEATKAVTDMH 436
Query: 97 GHLIGSKPVIITFVE 111
LIG KP+ + E
Sbjct: 437 LKLIGGKPLYVGMHE 451
Score = 45.8 bits (107), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 44/73 (60%), Gaps = 5/73 (6%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITS-SSLVSDKHI----GFIEFIMPKHATHAVSTMN 285
++V NL +++++E +++F FGT+TS +V DK + GF+ F + AT AV+ M+
Sbjct: 377 LYVKNLGEDVDDAELKKMFEPFGTVTSVKVMVDDKGVSRGFGFVCFSTHEEATKAVTDMH 436
Query: 286 GHVFKSKPLKVTL 298
+ KPL V +
Sbjct: 437 LKLIGGKPLYVGM 449
>gi|294889687|ref|XP_002772922.1| polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
gi|239877502|gb|EER04738.1| polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
Length = 715
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 74/254 (29%), Positives = 122/254 (48%), Gaps = 21/254 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+ +L P V L F G + +RV R+ +S G+A I F+ A+A++A +
Sbjct: 50 LYAGDLAPDVTEAVLYEVFNAIGPVASIRVCRDSVTRKSLGYAYINFHNVADAERALDTL 109
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N I +P + + P R G V+VKNL +D + L F FG
Sbjct: 110 NYSPIKGRPCRLMWSHRDPALRRSGAG---------NVYVKNLDRNIDNKALYDTFSLFG 160
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ +GKS+GFGF+ F S ++AE AI ++NG I + +V+ P KK
Sbjct: 161 NILSCKVALTPDGKSRGFGFVHFESDESAEAAIAKLNGMQIGEKTVYVA-----PFKKTA 215
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD---KHIGFIEFI 272
+ P +++ ++P++ N + +E F FG ITS ++ +D + F+ +
Sbjct: 216 ERNDG---TPKNFTNVYIKHIPASWNEEKIKEEFGAFGEITSLAVQTDPKGRRFAFVNYA 272
Query: 273 MPKHATHAVSTMNG 286
+ A AV M+G
Sbjct: 273 EFEQARAAVEEMDG 286
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 88/162 (54%), Gaps = 8/162 (4%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
++V NL+ ++DN+AL + F FG + +VA + +SRGF + F + A+ A ++N
Sbjct: 138 VYVKNLDRNIDNKALYDTFSLFGNILSCKVALTPDGKSRGFGFVHFESDESAEAAIAKLN 197
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G IG K V + + K +R+ K + V++K++ + +EE++K F FG
Sbjct: 198 GMQIGEKTVYVAPFK-KTAERNDGT---PKNFTN--VYIKHIPASWNEEKIKEEFGAFGE 251
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQH 198
I + + D G+ F F+ + ++ A A+ EM+G+ +++
Sbjct: 252 ITSLAVQTDPKGRR--FAFVNYAEFEQARAAVEEMDGKDVRN 291
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 49/75 (65%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMN 192
++VKNL E VD+ ELK F FG + VK++ D+ G S+GFGF+ F +++ A KA+ +M+
Sbjct: 377 LYVKNLGEDVDDAELKKMFEPFGTVTSVKVMVDDKGVSRGFGFVCFSTHEEATKAVTDMH 436
Query: 193 GRMIQHNSTFVSLAE 207
++I +V + E
Sbjct: 437 LKLIGGKPLYVGMHE 451
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 42/75 (56%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L+V NL VD+ L F+ FGT+ V+V + SRGF + F+T EA KA +M+
Sbjct: 377 LYVKNLGEDVDDAELKKMFEPFGTVTSVKVMVDDKGVSRGFGFVCFSTHEEATKAVTDMH 436
Query: 97 GHLIGSKPVIITFVE 111
LIG KP+ + E
Sbjct: 437 LKLIGGKPLYVGMHE 451
Score = 45.8 bits (107), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 44/73 (60%), Gaps = 5/73 (6%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITS-SSLVSDKHI----GFIEFIMPKHATHAVSTMN 285
++V NL +++++E +++F FGT+TS +V DK + GF+ F + AT AV+ M+
Sbjct: 377 LYVKNLGEDVDDAELKKMFEPFGTVTSVKVMVDDKGVSRGFGFVCFSTHEEATKAVTDMH 436
Query: 286 GHVFKSKPLKVTL 298
+ KPL V +
Sbjct: 437 LKLIGGKPLYVGM 449
>gi|401430030|ref|XP_003879497.1| putative polyadenylate-binding protein 1 [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322495747|emb|CBZ31053.1| putative polyadenylate-binding protein 1 [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 564
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 77/270 (28%), Positives = 124/270 (45%), Gaps = 47/270 (17%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
++V +L+ +++ L+ FK FGT+ +VRV R+ S G+ + F+ A+KA M
Sbjct: 27 IYVGDLDAAINEPQLVELFKPFGTILNVRVCRDIITQRSLGYGYVNFDNHESAEKAIESM 86
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N +G K V + + + P R G VFVKNL + VD + L F KFG
Sbjct: 87 NFKRVGDKCVRLMWQQRDPALRYSGNG---------NVFVKNLEKDVDSKSLHDIFTKFG 137
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNG---------------RMIQHNS 200
+I+ K+++DE GKS+G+GF+ F +A+ AI++MNG I+ N+
Sbjct: 138 SILSCKVMQDEEGKSRGYGFVHFKDETSAKDAIVKMNGAADHASEDKKALYVANFIRRNA 197
Query: 201 TFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSL 260
+L A +++ + ++ E+ FA+FG ITS++
Sbjct: 198 RLAALV-------------------ANFTNVYIKQVLPTVSKEVIEKFFAKFGGITSAAA 238
Query: 261 VSDKH---IGFIEFIMPKHATHAVSTMNGH 287
DK F F A AV M+ H
Sbjct: 239 CKDKSGRVFAFCNFEKHDDAVKAVEAMHDH 268
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 70/281 (24%), Positives = 124/281 (44%), Gaps = 35/281 (12%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNG- 97
V NLE VD+++L + F KFG++ +V +++ +SRG+ + F AK A V+MNG
Sbjct: 117 VKNLEKDVDSKSLHDIFTKFGSILSCKVMQDEEGKSRGYGFVHFKDETSAKDAIVKMNGA 176
Query: 98 --HLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
H K + ++ R + V++K ++ TV +E ++ F KFG
Sbjct: 177 ADHASEDKKALYVANFIRRNARLAALVANFT-----NVYIKQVLPTVSKEVIEKFFAKFG 231
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
I +D++G+ F F F + A KA+ M+ I + PG+K++
Sbjct: 232 GITSAAACKDKSGRV--FAFCNFEKHDDAVKAVEAMHDHHIDGITA--------PGEKLY 281
Query: 216 PKVKPP------------LLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLV-- 261
+ P + + N ++V N ++ ELF +G + S ++
Sbjct: 282 VQRAQPRSERLIALRQKYMQHQSLGNNLYVRNFDPEFTGADLLELFKEYGDVKSCRVMVS 341
Query: 262 ---SDKHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299
+ + GF+ F A A+ MNG + KPL V ++
Sbjct: 342 ESGASRGFGFVSFSNADEANAALREMNGRMLNGKPLIVNIA 382
Score = 70.9 bits (172), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 89/180 (49%), Gaps = 20/180 (11%)
Query: 116 QRSKPVGPE---EKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSK 171
Q + PV + +K + ++V +L ++E +L F FG I+ V++ RD +S
Sbjct: 7 QAAAPVAHQPQVDKPMQIASIYVGDLDAAINEPQLVELFKPFGTILNVRVCRDIITQRSL 66
Query: 172 GFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKI 231
G+G++ F ++++AEKAI MN + + ++ + + P L+ + +
Sbjct: 67 GYGYVNFDNHESAEKAIESMNFKRVGDKCV-----------RLMWQQRDPALRYSGNGNV 115
Query: 232 FVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNG 286
FV NL ++++ ++F +FG+I S ++ D + GF+ F A A+ MNG
Sbjct: 116 FVKNLEKDVDSKSLHDIFTKFGSILSCKVMQDEEGKSRGYGFVHFKDETSAKDAIVKMNG 175
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 85/177 (48%), Gaps = 8/177 (4%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+++ + P+V + + F KFG + ++K+ R FA F +A KA M+
Sbjct: 209 VYIKQVLPTVSKEVIEKFFAKFGGITSAAACKDKS--GRVFAFCNFEKHDDAVKAVEAMH 266
Query: 97 GHLIG--SKPVIITFVELKPGQRSKPVGPEEK----QYKKDKVFVKNLVETVDEEELKSH 150
H I + P +V+ + + + +K Q + ++V+N +L
Sbjct: 267 DHHIDGITAPGEKLYVQRAQPRSERLIALRQKYMQHQSLGNNLYVRNFDPEFTGADLLEL 326
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
F ++G++ +++ E+G S+GFGF+ F + A A+ EMNGRM+ V++A+
Sbjct: 327 FKEYGDVKSCRVMVSESGASRGFGFVSFSNADEANAALREMNGRMLNGKPLIVNIAQ 383
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 44/79 (55%)
Query: 35 NELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVE 94
N L+V N +P L+ FK++G ++ RV +++ SRGF + F+ EA A E
Sbjct: 307 NNLYVRNFDPEFTGADLLELFKEYGDVKSCRVMVSESGASRGFGFVSFSNADEANAALRE 366
Query: 95 MNGHLIGSKPVIITFVELK 113
MNG ++ KP+I+ + +
Sbjct: 367 MNGRMLNGKPLIVNIAQRR 385
>gi|340546029|gb|AEK51813.1| cytoplasmic poly(A) binding protein 1 [Alligator mississippiensis]
gi|402697275|gb|AFQ90825.1| polyA-binding protein cytoplasmic 1, partial [Anniella pulchra]
gi|402697277|gb|AFQ90826.1| polyA-binding protein cytoplasmic 1, partial [Chelydra serpentina]
gi|402697281|gb|AFQ90828.1| polyA-binding protein cytoplasmic 1, partial [Cyrtodactylus sp.
JJF-2012]
gi|402697287|gb|AFQ90831.1| polyA-binding protein cytoplasmic 1, partial [Draco beccarii]
gi|402697289|gb|AFQ90832.1| polyA-binding protein cytoplasmic 1, partial [Draco sumatranus]
Length = 177
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 60/167 (35%), Positives = 100/167 (59%), Gaps = 4/167 (2%)
Query: 41 NLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLI 100
NL+ S+DN+AL + F FG + +V ++N S+G+ + F T A++A +MNG L+
Sbjct: 2 NLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLL 60
Query: 101 GSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEV 160
+ V + + + +R +G K++ V++KN E +D+E LK F KFG + V
Sbjct: 61 NDRKVFVGRFKSRK-EREAELGARAKEFTN--VYIKNFGEDMDDERLKELFGKFGPALSV 117
Query: 161 KIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
K++ DE+GKSKGFGF+ F ++ A+KA+ EMNG+ + +V A+
Sbjct: 118 KVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQ 164
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 87/168 (51%), Gaps = 15/168 (8%)
Query: 136 KNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRM 195
KNL +++D + L F FGNI+ K+V DENG SKG+GF+ F + +AAE+AI +MNG +
Sbjct: 1 KNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGML 59
Query: 196 IQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARK--NKIFVANLPSNINNSEFEELFARFG 253
+ FV G+ K + L K +++ N ++++ +ELF +FG
Sbjct: 60 LNDRKVFV-------GRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFG 112
Query: 254 TITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
S +++D K GF+ F + A AV MNG K + V
Sbjct: 113 PALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 160
Score = 42.7 bits (99), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 7/87 (8%)
Query: 21 GARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAII 80
GAR+ KE VY + N +D++ L F KFG V+V +++ +S+GF +
Sbjct: 81 GARA-KEFTNVY------IKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFV 133
Query: 81 VFNTPAEAKKARVEMNGHLIGSKPVII 107
F +A+KA EMNG + K + +
Sbjct: 134 SFERHEDAQKAVDEMNGKELNGKQIYV 160
>gi|119627672|gb|EAX07267.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_g [Homo sapiens]
Length = 338
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 63/177 (35%), Positives = 96/177 (54%), Gaps = 11/177 (6%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KP+ I + + P R VG VF+KNL +++D + L
Sbjct: 68 ALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
F FGNI+ K++ E+G+SKGFGF+ F S + A KA+ EMNGR++ +V+LA+
Sbjct: 119 FSAFGNILSCKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 174
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 86/182 (47%), Gaps = 20/182 (10%)
Query: 128 YKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEK 186
Y ++V +L V E L F G ++ +++ RD +S G+ ++ F AE+
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 187 AIIEMNGRMIQHNSTFVSLAEIVPGK--KVFPKVKPPLLQPARKNKIFVANLPSNINNSE 244
A+ MN +++ GK ++ + P L+ + +F+ NL +I+N
Sbjct: 68 ALDTMN-------------FDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKA 114
Query: 245 FEELFARFGTITSSSLV----SDKHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSG 300
+ F+ FG I S ++ K GF+ F P+ AT AV+ MNG + SKPL V L+
Sbjct: 115 LYDTFSAFGNILSCKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 174
Query: 301 TK 302
K
Sbjct: 175 RK 176
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 58/110 (52%), Gaps = 11/110 (10%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK + W + D R + N + + NL+ S+DN+AL + F FG +
Sbjct: 78 KGKPIRIMWSQ---RDPSLRKSGVGN-------VFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELK 113
+V ++ S+GF + F++P EA KA EMNG ++GSKP+ + + K
Sbjct: 128 CKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRK 176
Score = 39.3 bits (90), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITS----SSLVSDKHIGF--IEFIMPKHATHAVSTM 284
++V +L S++ + E F+ G + S +++ + +G+ + F P A A+ TM
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N V K KP+++ S P +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSL 93
>gi|385305672|gb|EIF49630.1| polyadenylate-binding protein [Dekkera bruxellensis AWRI1499]
Length = 655
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 75/278 (26%), Positives = 139/278 (50%), Gaps = 20/278 (7%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL P +DN+ L + F FG + ++A +++ S+GF + ++ AK A +NG
Sbjct: 152 IKNLHPDIDNKTLYDTFSTFGKILSCKIATDEHGHSKGFGFVHYDDAESAKAAIENVNGM 211
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ + V + + + SK +E V+VKN + E++L+ F +G +
Sbjct: 212 LLNNMEVYVAPHIPRKDRESKM---QEMIKNFTNVYVKNFGPEMTEDQLREMFEAYGKVT 268
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNS-TFVSLAEIVPGKKVFPK 217
+ D GK++GFGF+ F + A KA+ +N + ++ +V A+ K+ +
Sbjct: 269 STYLPTDNEGKARGFGFVNFEDHXEAAKAVDALNEKELEGGRILYVGRAQ---KKREREE 325
Query: 218 VKPPLLQPARKNKI--------FVANLPSNINNSEFEELFARFGTITSSSLVSD-----K 264
Q AR+ +I FV NL I++++ +E FA +G ITS+ ++++ +
Sbjct: 326 SLRKQWQQARQERISKYQGVNLFVKNLDDTIDDTKLKEEFAPYGKITSAKVMTNDAGKSR 385
Query: 265 HIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ + P+ AT A++ M+ + KPL V L+ K
Sbjct: 386 GFGFVCYTKPEEATRAINEMHQRMVMGKPLYVALAQRK 423
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 85/283 (30%), Positives = 133/283 (46%), Gaps = 33/283 (11%)
Query: 20 EGARS----NKENNKVYKENE-----LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK 70
+GA+S N ++ K K+NE L+V +L+PSV L F K G + +RV RB
Sbjct: 36 DGAKSEEAENGKDTKDSKDNEQTFASLYVGDLDPSVTESDLYEIFSKVGQVSSIRVCRBA 95
Query: 71 -NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYK 129
+S +A + + EA+ A + I K I + + P R K G
Sbjct: 96 VTKKSLCYAYVNYQKREEAEHALDTLAFCDIKGKQCRIMWSQRDPSMRKKGTG------- 148
Query: 130 KDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAII 189
VF+KNL +D + L F FG I+ KI DE+G SKGFGF+ + ++A+ AI
Sbjct: 149 --NVFIKNLHPDIDNKTLYDTFSTFGKILSCKIATDEHGHSKGFGFVHYDDAESAKAAIE 206
Query: 190 EMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKN--KIFVANLPSNINNSEFEE 247
+NG ++ N+ V +A +P K K +Q KN ++V N + + E
Sbjct: 207 NVNGMLL--NNMEVYVAPHIPRKDRESK-----MQEMIKNFTNVYVKNFGPEMTEDQLRE 259
Query: 248 LFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMN 285
+F +G +TS+ L +D + GF+ F A AV +N
Sbjct: 260 MFEAYGKVTSTYLPTDNEGKARGFGFVNFEDHXEAAKAVDALN 302
Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 92/179 (51%), Gaps = 8/179 (4%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
++V N P + L F+ +G + + + ++RGF + F EA KA +N
Sbjct: 243 VYVKNFGPEMTEDQLREMFEAYGKVTSTYLPTDNEGKARGFGFVNFEDHXEAAKAVDALN 302
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKV--------FVKNLVETVDEEELK 148
+ ++ K +R + + + +Q +++++ FVKNL +T+D+ +LK
Sbjct: 303 EKELEGGRILYVGRAQKKREREESLRKQWQQARQERISKYQGVNLFVKNLDDTIDDTKLK 362
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
F +G I K++ ++ GKS+GFGF+ + + A +AI EM+ RM+ +V+LA+
Sbjct: 363 EEFAPYGKITSAKVMTNDAGKSRGFGFVCYTKPEEATRAINEMHQRMVMGKPLYVALAQ 421
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 43/82 (52%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L V NL+ ++D+ L EF +G + +V N +SRGF + + P EA +A
Sbjct: 342 YQGVNLFVKNLDDTIDDTKLKEEFAPYGKITSAKVMTNDAGKSRGFGFVCYTKPEEATRA 401
Query: 92 RVEMNGHLIGSKPVIITFVELK 113
EM+ ++ KP+ + + K
Sbjct: 402 INEMHQRMVMGKPLYVALAQRK 423
>gi|449486336|ref|XP_004177123.1| PREDICTED: embryonic polyadenylate-binding protein A-like
[Taeniopygia guttata]
Length = 167
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 61/166 (36%), Positives = 92/166 (55%), Gaps = 11/166 (6%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F G + +RV R+ S G+A I F PA+A++
Sbjct: 7 YPLASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDVATRRSLGYAYINFQQPADAER 66
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I +P+ I + + PG R VG VF+KNL +++D + L
Sbjct: 67 ALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVG---------NVFIKNLDDSIDNKALYDT 117
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMI 196
F FGNI+ K+V DENG S+G+GF+ F +++AA +AI MNG ++
Sbjct: 118 FSAFGNILSCKVVCDENG-SRGYGFVHFETHEAATRAIETMNGMLL 162
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 81/178 (45%), Gaps = 19/178 (10%)
Query: 120 PVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRD-ENGKSKGFGFIQF 178
P GP Y ++V +L V E L F G I+ +++ RD +S G+ +I F
Sbjct: 2 PSGP---GYPLASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDVATRRSLGYAYINF 58
Query: 179 FSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
AE+A+ MN +I+ + ++ PG L+ + +F+ NL
Sbjct: 59 QQPADAERALDTMNFEVIKGRPIRIMWSQRDPG-----------LRKSGVGNVFIKNLDD 107
Query: 239 NINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSK 292
+I+N + F+ FG I S +V D + GF+ F + AT A+ TMNG + +
Sbjct: 108 SIDNKALYDTFSAFGNILSCKVVCDENGSRGYGFVHFETHEAATRAIETMNGMLLNDR 165
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 11/102 (10%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KG+ + W + D G R + N + + NL+ S+DN+AL + F FG +
Sbjct: 77 KGRPIRIMWSQ---RDPGLRKSGVGN-------VFIKNLDDSIDNKALYDTFSAFGNILS 126
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPV 105
+V ++N SRG+ + F T A +A MNG L+ + V
Sbjct: 127 CKVVCDENG-SRGYGFVHFETHEAATRAIETMNGMLLNDRKV 167
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGF--IEFIMPKHATHAVSTM 284
++V +L ++ + E F+ G I S + D + +G+ I F P A A+ TM
Sbjct: 12 LYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 71
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N V K +P+++ S PG+
Sbjct: 72 NFEVIKGRPIRIMWSQRDPGL 92
>gi|62751624|ref|NP_001015753.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Xenopus
(Silurana) tropicalis]
gi|58476781|gb|AAH89689.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Xenopus
(Silurana) tropicalis]
Length = 217
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 70/226 (30%), Positives = 116/226 (51%), Gaps = 20/226 (8%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KP+ I + + P R VG VF+KNL +++D + L
Sbjct: 68 ALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVP 210
F FGNI+ K+V DENG SKG+ F+ F + AA++AI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFV------- 170
Query: 211 GK-KVFPKVKPPLLQPARK-NKIFVANLPSNINNSEFEELFARFGT 254
G+ K + + L A++ +++ N ++++ +E F+++G
Sbjct: 171 GRFKCRREREAELGAKAKEFTNVYIKNFGEDMDDERLKETFSKYGC 216
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 77/176 (43%), Gaps = 20/176 (11%)
Query: 128 YKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEK 186
Y ++V +L V E L F G ++ +++ RD +S G+ ++ F AE+
Sbjct: 8 YPMASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 187 AIIEMNGRMIQHNSTFVSLAEIVPGK--KVFPKVKPPLLQPARKNKIFVANLPSNINNSE 244
A+ MN +++ GK ++ + P L+ + +F+ NL +I+N
Sbjct: 68 ALDTMN-------------FDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKA 114
Query: 245 FEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
+ F+ FG I S +V D K F+ F A A+ MNG + + + V
Sbjct: 115 LYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFV 170
>gi|389603137|ref|XP_001568596.2| putative polyadenylate-binding protein 1 [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|322505742|emb|CAM43715.2| putative polyadenylate-binding protein 1 [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 554
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 77/270 (28%), Positives = 122/270 (45%), Gaps = 47/270 (17%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
++V +L+ +++ L+ FK FGT+ +VRV R+ S G+ + F+ A++A M
Sbjct: 27 IYVGDLDAAINEPQLVELFKPFGTILNVRVCRDIITQRSLGYGYVNFDNHHSAERAIESM 86
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N +G K V + + + P R G VFVKNL + VD + L F KFG
Sbjct: 87 NFRRVGDKCVRLMWQQRDPSLRYSGNG---------NVFVKNLEKDVDSKSLHDIFTKFG 137
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNG---------------RMIQHNS 200
+I+ K++ DE GKS+G+GF+ F +A+ AI++MNG I+ N+
Sbjct: 138 SILSCKVMEDEEGKSRGYGFVHFKDEISAKDAIVKMNGAADHASEDKKALYVANFIRRNA 197
Query: 201 TFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSL 260
+L A +++ + +N E FA+FG ITS++
Sbjct: 198 RLAALV-------------------ANFTNVYIKQVLPTVNKEVIENFFAKFGGITSAAA 238
Query: 261 VSDKH---IGFIEFIMPKHATHAVSTMNGH 287
DK F F A AV M+ H
Sbjct: 239 CKDKSGRVFAFCNFEKHDDAVKAVEAMHDH 268
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/281 (24%), Positives = 125/281 (44%), Gaps = 35/281 (12%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNG- 97
V NLE VD+++L + F KFG++ +V ++ +SRG+ + F AK A V+MNG
Sbjct: 117 VKNLEKDVDSKSLHDIFTKFGSILSCKVMEDEEGKSRGYGFVHFKDEISAKDAIVKMNGA 176
Query: 98 --HLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
H K + ++ R + V++K ++ TV++E +++ F KFG
Sbjct: 177 ADHASEDKKALYVANFIRRNARLAALVA-----NFTNVYIKQVLPTVNKEVIENFFAKFG 231
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
I +D++G+ F F F + A KA+ M+ I + PG+K++
Sbjct: 232 GITSAAACKDKSGRV--FAFCNFEKHDDAVKAVEAMHDHHIDGITA--------PGEKLY 281
Query: 216 PKVKPP------------LLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLV-- 261
+ P + + N ++V N ++ ELF +G + S ++
Sbjct: 282 VQRAQPRSERLIALRQKYMQHQSLGNNLYVRNFDPEFTGADLLELFKEYGDVKSCRVMMS 341
Query: 262 ---SDKHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299
+ + GF+ F A A+ MNG + KPL V ++
Sbjct: 342 ESGASRGFGFVSFSNADEANAALREMNGRMLNGKPLIVNIA 382
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 87/177 (49%), Gaps = 8/177 (4%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+++ + P+V+ + + N F KFG + ++K+ R FA F +A KA M+
Sbjct: 209 VYIKQVLPTVNKEVIENFFAKFGGITSAAACKDKS--GRVFAFCNFEKHDDAVKAVEAMH 266
Query: 97 GHLIG--SKPVIITFVELKPGQRSKPVGPEEK----QYKKDKVFVKNLVETVDEEELKSH 150
H I + P +V+ + + + +K Q + ++V+N +L
Sbjct: 267 DHHIDGITAPGEKLYVQRAQPRSERLIALRQKYMQHQSLGNNLYVRNFDPEFTGADLLEL 326
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
F ++G++ +++ E+G S+GFGF+ F + A A+ EMNGRM+ V++A+
Sbjct: 327 FKEYGDVKSCRVMMSESGASRGFGFVSFSNADEANAALREMNGRMLNGKPLIVNIAQ 383
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 44/79 (55%)
Query: 35 NELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVE 94
N L+V N +P L+ FK++G ++ RV +++ SRGF + F+ EA A E
Sbjct: 307 NNLYVRNFDPEFTGADLLELFKEYGDVKSCRVMMSESGASRGFGFVSFSNADEANAALRE 366
Query: 95 MNGHLIGSKPVIITFVELK 113
MNG ++ KP+I+ + +
Sbjct: 367 MNGRMLNGKPLIVNIAQRR 385
>gi|407408437|gb|EKF31876.1| poly(A)-binding protein, putative,polyadenylate-binding protein,
putative [Trypanosoma cruzi marinkellei]
Length = 569
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 83/262 (31%), Positives = 124/262 (47%), Gaps = 42/262 (16%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L+P V L+ FK FGT+ +VRV R+ S G+ I FN A KA +
Sbjct: 24 LYVGDLDPIVTEPHLVELFKPFGTILNVRVCRDIITQRSLGYGYINFNNHDSAAKAMEAL 83
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N +G K + I + + P R G VFVKNL VD EL + F KFG
Sbjct: 84 NFKRVGDKCMRIMWQQRDPALRYSGNG---------NVFVKNLKNEVDSRELGAIFKKFG 134
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNG---------RMIQHNSTFVS-- 204
+I+ K++ DE GKS+G+GF+ F + AA++AI MNG +M + + F+
Sbjct: 135 DILSCKVMEDEEGKSRGYGFVHFKNDNAAKEAIENMNGDKDHADEEKKMGLYVANFIRRN 194
Query: 205 --LAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
LA +V A +++ + ++ E+ F+RFG ITSS+
Sbjct: 195 ARLATLV----------------ANFTNVYIKQVLPTVDKEVIEKFFSRFGGITSSATCK 238
Query: 263 DKH---IGFIEFIMPKHATHAV 281
DK+ F F + A A+
Sbjct: 239 DKNGRVFAFCNFEKHEDAVKAI 260
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 74/284 (26%), Positives = 127/284 (44%), Gaps = 40/284 (14%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNG- 97
V NL+ VD++ L FKKFG + +V ++ +SRG+ + F AK+A MNG
Sbjct: 114 VKNLKNEVDSRELGAIFKKFGDILSCKVMEDEEGKSRGYGFVHFKNDNAAKEAIENMNGD 173
Query: 98 --HLIGSKPV---IITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFI 152
H K + + F+ +R+ + + V++K ++ TVD+E ++ F
Sbjct: 174 KDHADEEKKMGLYVANFI-----RRNARLATLVANFTN--VYIKQVLPTVDKEVIEKFFS 226
Query: 153 KFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGK 212
+FG I +D+NG+ F F F ++ A KAI + + + + PG+
Sbjct: 227 RFGGITSSATCKDKNGRV--FAFCNFEKHEDAVKAIEASHEQFVD--------GVVPPGE 276
Query: 213 KVFPKVKPP----LLQPARK--------NKIFVANLPSNINNSEFEELFARFGTITSSSL 260
K++ + P L+ +K N ++V N ELF +G I S +
Sbjct: 277 KLYVQRAQPRSERLIALRQKYMQCQTLGNNLYVRNFDPEFTEENLHELFKEYGVIRSCRV 336
Query: 261 VSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299
++D + GF+ F A A+ MNG + KPL V ++
Sbjct: 337 MTDANGNSRGFGFVSFGNADQANAALREMNGRMLNGKPLIVNIA 380
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 84/177 (47%), Gaps = 8/177 (4%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+++ + P+VD + + F +FG + ++KN R FA F +A KA +
Sbjct: 207 VYIKQVLPTVDKEVIEKFFSRFGGITSSATCKDKN--GRVFAFCNFEKHEDAVKAIEASH 264
Query: 97 GHLI-GSKPVIITFVELKPGQRSKPVGPEEKQYKK-----DKVFVKNLVETVDEEELKSH 150
+ G P + RS+ + ++Y + + ++V+N EE L
Sbjct: 265 EQFVDGVVPPGEKLYVQRAQPRSERLIALRQKYMQCQTLGNNLYVRNFDPEFTEENLHEL 324
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
F ++G I +++ D NG S+GFGF+ F + A A+ EMNGRM+ V++A+
Sbjct: 325 FKEYGVIRSCRVMTDANGNSRGFGFVSFGNADQANAALREMNGRMLNGKPLIVNIAQ 381
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 76/160 (47%), Gaps = 17/160 (10%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEM 191
++V +L V E L F FG I+ V++ RD +S G+G+I F ++ +A KA+ +
Sbjct: 24 LYVGDLDPIVTEPHLVELFKPFGTILNVRVCRDIITQRSLGYGYINFNNHDSAAKAMEAL 83
Query: 192 NGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFAR 251
N + + ++ + + P L+ + +FV NL + +++ E +F +
Sbjct: 84 NFKRVGDKCM-----------RIMWQQRDPALRYSGNGNVFVKNLKNEVDSRELGAIFKK 132
Query: 252 FGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNG 286
FG I S ++ D + GF+ F A A+ MNG
Sbjct: 133 FGDILSCKVMEDEEGKSRGYGFVHFKNDNAAKEAIENMNG 172
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 42/79 (53%)
Query: 35 NELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVE 94
N L+V N +P + L FK++G +R RV + N SRGF + F +A A E
Sbjct: 305 NNLYVRNFDPEFTEENLHELFKEYGVIRSCRVMTDANGNSRGFGFVSFGNADQANAALRE 364
Query: 95 MNGHLIGSKPVIITFVELK 113
MNG ++ KP+I+ + +
Sbjct: 365 MNGRMLNGKPLIVNIAQRR 383
>gi|115520925|gb|ABJ08845.1| putative polyadenylate-binding protein 1 [Squalus acanthias]
Length = 212
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 58/167 (34%), Positives = 101/167 (60%), Gaps = 4/167 (2%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S+DN+AL + F FG + +V ++N S+G+ + F T A++A +MN
Sbjct: 33 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMN 91
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G L+ + V + + + +R +G + K++ V++KN E +D+E LK F KFG
Sbjct: 92 GMLLNDRKVFVGRFKSRK-EREAELGAKAKEFTN--VYIKNFGEDMDDERLKEIFNKFGA 148
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFV 203
+ VK++ D++G+SKGFGF+ F ++ A+KA+ EMNG+ I +V
Sbjct: 149 FLSVKVMTDDSGRSKGFGFVSFEKHEDAQKAVDEMNGKEINGRQVYV 195
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 102/199 (51%), Gaps = 24/199 (12%)
Query: 95 MNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKF 154
MN +I KPV I + + P R VG +F+KNL +++D + L F F
Sbjct: 4 MNSDVIKGKPVRIMWSQRDPSLRKSGVG---------NIFIKNLDKSIDNKALYDTFSAF 54
Query: 155 GNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKV 214
GNI+ K+V DENG SKG+GF+ F +++AAE+AI +MNG ++ FV G+
Sbjct: 55 GNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFV-------GRFK 106
Query: 215 FPKVKPPLLQPARK--NKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIG 267
K + L K +++ N ++++ +E+F +FG S +++D K G
Sbjct: 107 SRKEREAELGAKAKEFTNVYIKNFGEDMDDERLKEIFNKFGAFLSVKVMTDDSGRSKGFG 166
Query: 268 FIEFIMPKHATHAVSTMNG 286
F+ F + A AV MNG
Sbjct: 167 FVSFEKHEDAQKAVDEMNG 185
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 48/97 (49%), Gaps = 6/97 (6%)
Query: 206 AEIVPGK--KVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD 263
++++ GK ++ + P L+ + IF+ NL +I+N + F+ FG I S +V D
Sbjct: 6 SDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD 65
Query: 264 ----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
K GF+ F + A A+ MNG + + + V
Sbjct: 66 ENGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFV 102
>gi|340546033|gb|AEK51815.1| cytoplasmic poly(A) binding protein 1 [Ichthyophis bannanicus]
Length = 177
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 59/167 (35%), Positives = 97/167 (58%), Gaps = 4/167 (2%)
Query: 41 NLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLI 100
NL+ S+DN+AL + F FG + +V ++N S+G+A + F T A +A +MNG L+
Sbjct: 2 NLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLL 60
Query: 101 GSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEV 160
+ V + + + +R +G K++ V++KN + +D+E LK F K+G + V
Sbjct: 61 NDRKVFVGRFKSRK-EREAELGARAKEFTN--VYIKNFGDDMDDERLKEMFSKYGKTLSV 117
Query: 161 KIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
K++ D GKSKGFGF+ F ++ A KA+ EMNG+ + FV A+
Sbjct: 118 KVMTDSTGKSKGFGFVSFEKHEDANKAVEEMNGKDVNGKMVFVGRAQ 164
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 83/158 (52%), Gaps = 15/158 (9%)
Query: 136 KNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRM 195
KNL +++D + L F FGNI+ K+V DENG SKG+ F+ F + AA++AI +MNG +
Sbjct: 1 KNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGML 59
Query: 196 IQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARK--NKIFVANLPSNINNSEFEELFARFG 253
+ FV G+ K + L K +++ N ++++ +E+F+++G
Sbjct: 60 LNDRKVFV-------GRFKSRKEREAELGARAKEFTNVYIKNFGDDMDDERLKEMFSKYG 112
Query: 254 TITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNG 286
S +++D K GF+ F + A AV MNG
Sbjct: 113 KTLSVKVMTDSTGKSKGFGFVSFEKHEDANKAVEEMNG 150
Score = 42.0 bits (97), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 7/87 (8%)
Query: 21 GARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAII 80
GAR+ KE VY + N +D++ L F K+G V+V + +S+GF +
Sbjct: 81 GARA-KEFTNVY------IKNFGDDMDDERLKEMFSKYGKTLSVKVMTDSTGKSKGFGFV 133
Query: 81 VFNTPAEAKKARVEMNGHLIGSKPVII 107
F +A KA EMNG + K V +
Sbjct: 134 SFEKHEDANKAVEEMNGKDVNGKMVFV 160
>gi|402697297|gb|AFQ90836.1| polyA-binding protein cytoplasmic 1, partial [Testudo hermanni]
Length = 176
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 59/167 (35%), Positives = 99/167 (59%), Gaps = 4/167 (2%)
Query: 41 NLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLI 100
NL+ S+DN+AL + F FG + +V ++N S+G+ + F T A++A +MNG L+
Sbjct: 2 NLDKSIDNKALYDXFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLL 60
Query: 101 GSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEV 160
+ V + + + +R +G K++ V++KN E +D+E LK F FG + V
Sbjct: 61 NDRKVFVGRFKSRK-EREAELGARAKEFTN--VYIKNFGEDMDDERLKELFGXFGPALSV 117
Query: 161 KIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
K++ DE+GKSKGFGF+ F ++ A+KA+ EMNG+ + +V A+
Sbjct: 118 KVMTDESGKSKGFGFVSFERHEDAQKAVXEMNGKELNGKQIYVGRAQ 164
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 86/168 (51%), Gaps = 15/168 (8%)
Query: 136 KNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRM 195
KNL +++D + L F FGNI+ K+V DENG SKG+GF+ F + +AAE+AI +MNG +
Sbjct: 1 KNLDKSIDNKALYDXFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGML 59
Query: 196 IQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARK--NKIFVANLPSNINNSEFEELFARFG 253
+ FV G+ K + L K +++ N ++++ +ELF FG
Sbjct: 60 LNDRKVFV-------GRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGXFG 112
Query: 254 TITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
S +++D K GF+ F + A AV MNG K + V
Sbjct: 113 PALSVKVMTDESGKSKGFGFVSFERHEDAQKAVXEMNGKELNGKQIYV 160
Score = 41.2 bits (95), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 7/87 (8%)
Query: 21 GARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAII 80
GAR+ KE VY + N +D++ L F FG V+V +++ +S+GF +
Sbjct: 81 GARA-KEFTNVY------IKNFGEDMDDERLKELFGXFGPALSVKVMTDESGKSKGFGFV 133
Query: 81 VFNTPAEAKKARVEMNGHLIGSKPVII 107
F +A+KA EMNG + K + +
Sbjct: 134 SFERHEDAQKAVXEMNGKELNGKQIYV 160
>gi|12836631|dbj|BAB23742.1| unnamed protein product [Mus musculus]
Length = 168
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 62/166 (37%), Positives = 92/166 (55%), Gaps = 11/166 (6%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KPV I + + P R VG +F+KNL +++D + L
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVG---------NIFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMI 196
F FGNI+ K+V DENG SKG+GF+ F + +AAE+AI +MNG ++
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLL 163
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 79/179 (44%), Gaps = 20/179 (11%)
Query: 121 VGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFF 179
+ P Y ++V +L V E L F G I+ +++ RD +S G+ ++ F
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 180 SYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGK--KVFPKVKPPLLQPARKNKIFVANLP 237
AE+A+ MN +++ GK ++ + P L+ + IF+ NL
Sbjct: 61 QPADAERALDTMN-------------FDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLD 107
Query: 238 SNINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSK 292
+I+N + F+ FG I S +V D K GF+ F + A A+ MNG + +
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 166
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S+DN+AL + F FG + +V ++N S+G+ + F T A++A +MN
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 159
Query: 97 GHLIGSKPV 105
G L+ + V
Sbjct: 160 GMLLNDRKV 168
>gi|294877113|ref|XP_002767904.1| protein HSH49, putative [Perkinsus marinus ATCC 50983]
gi|239869872|gb|EER00622.1| protein HSH49, putative [Perkinsus marinus ATCC 50983]
Length = 289
Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 73/254 (28%), Positives = 119/254 (46%), Gaps = 21/254 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+ +L P V+ L F G + +RV R+ +S G+A I F+ A+A++A +
Sbjct: 51 LYAGDLAPDVNEAVLYEVFNGIGPVASIRVCRDSVTRKSLGYAYINFHNVADAERALDTL 110
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N I +P + + P R G V+VKNL +D + L F FG
Sbjct: 111 NYSPINGRPCRLMWSHRDPALRRSGAG---------NVYVKNLDRNIDNKALYDTFSLFG 161
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ +GKS+GFGF+ F S ++AE AI ++NG I + +V+ KK
Sbjct: 162 NILSCKVALTPDGKSRGFGFVHFESDESAEAAIAKLNGMQIGEKTVYVAQF-----KKTA 216
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD---KHIGFIEFI 272
+ P +++ ++P + + E F FG ITS ++ +D + F+ F
Sbjct: 217 DRSDG---SPKNFTNVYIKHIPPSWTEEKIREEFGAFGEITSFAMQTDPKGRRFAFVNFA 273
Query: 273 MPKHATHAVSTMNG 286
+ A AV M+G
Sbjct: 274 EFEQARAAVEDMDG 287
>gi|342183460|emb|CCC92940.1| putative polyadenylate-binding protein 1 [Trypanosoma congolense
IL3000]
Length = 552
Score = 107 bits (266), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 74/257 (28%), Positives = 121/257 (47%), Gaps = 21/257 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L+P++ L+ F+ +GT+ +VRV R+ S G+ + ++ A KA EM
Sbjct: 23 LYVGDLDPAISEPQLVEIFRPYGTILNVRVCRDIITQRSLGYGYVNYDNANSATKAMEEM 82
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N +G K + I + + P R G VFVKNL VD EL F KFG
Sbjct: 83 NFKRVGEKCIRIMWQQRDPALRYSGNG---------NVFVKNLKGEVDSRELSLIFKKFG 133
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNG--RMIQHNSTFVSLAEIVPGKK 213
I+ K++ DE+G S+G+GF+ F AA+ AI MNG T + +A +
Sbjct: 134 EILSCKVMDDESGNSRGYGFVHFKDDNAAKSAIESMNGVTEYADEKKTALYVANFIRRNA 193
Query: 214 VFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKH---IGFIE 270
+ A +++ + ++ + E+ F++FG ITS+++ DK+ F
Sbjct: 194 RLAALV------ANFTNVYIKQILPTVDKAIIEKFFSKFGGITSAAICKDKNGRAFAFCN 247
Query: 271 FIMPKHATHAVSTMNGH 287
F A A+ + H
Sbjct: 248 FEKHDDAVKAIEEFHDH 264
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 73/280 (26%), Positives = 124/280 (44%), Gaps = 33/280 (11%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNG- 97
V NL+ VD++ L FKKFG + +V +++ SRG+ + F AK A MNG
Sbjct: 113 VKNLKGEVDSRELSLIFKKFGEILSCKVMDDESGNSRGYGFVHFKDDNAAKSAIESMNGV 172
Query: 98 -HLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
K + +R+ + + V++K ++ TVD+ ++ F KFG
Sbjct: 173 TEYADEKKTALYVANFI--RRNARLAALVANFTN--VYIKQILPTVDKAIIEKFFSKFGG 228
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFP 216
I I +D+NG++ F F F + A KAI E + ++ + PG+K++
Sbjct: 229 ITSAAICKDKNGRA--FAFCNFEKHDDAVKAIEEFHDHEVEGVTQ--------PGEKLYV 278
Query: 217 KVKPP----LLQPARK--------NKIFVANLPSNINNSEFEELFARFGTITSSSLVSD- 263
+ P L+ +K N ++V N + ELF +G I S +++D
Sbjct: 279 QRAQPRSERLIALRQKYMQCQSLGNNLYVRNFDPEFTEKDLNELFKEYGVIRSCRVMTDA 338
Query: 264 ----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299
+ GF+ F A A+ M+G + KPL V ++
Sbjct: 339 NGVSRGFGFVSFENADQANAALREMSGRMLNGKPLVVNIA 378
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 88/177 (49%), Gaps = 8/177 (4%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+++ + P+VD + F KFG + + ++KN R FA F +A KA E +
Sbjct: 205 VYIKQILPTVDKAIIEKFFSKFGGITSAAICKDKN--GRAFAFCNFEKHDDAVKAIEEFH 262
Query: 97 GHLIG--SKPVIITFVELKPGQRSKPVGPEEK----QYKKDKVFVKNLVETVDEEELKSH 150
H + ++P +V+ + + + +K Q + ++V+N E++L
Sbjct: 263 DHEVEGVTQPGEKLYVQRAQPRSERLIALRQKYMQCQSLGNNLYVRNFDPEFTEKDLNEL 322
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
F ++G I +++ D NG S+GFGF+ F + A A+ EM+GRM+ V++A+
Sbjct: 323 FKEYGVIRSCRVMTDANGVSRGFGFVSFENADQANAALREMSGRMLNGKPLVVNIAQ 379
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 42/79 (53%)
Query: 35 NELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVE 94
N L+V N +P + L FK++G +R RV + N SRGF + F +A A E
Sbjct: 303 NNLYVRNFDPEFTEKDLNELFKEYGVIRSCRVMTDANGVSRGFGFVSFENADQANAALRE 362
Query: 95 MNGHLIGSKPVIITFVELK 113
M+G ++ KP+++ + +
Sbjct: 363 MSGRMLNGKPLVVNIAQRR 381
>gi|402697293|gb|AFQ90834.1| polyA-binding protein cytoplasmic 1, partial [Oscaecilia
ochrocephala]
Length = 177
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/167 (34%), Positives = 99/167 (59%), Gaps = 4/167 (2%)
Query: 41 NLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLI 100
NL+ S+DN+AL + F FG + +V ++N S+G+ + F T A++A +MNG L+
Sbjct: 2 NLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVXFETQEAAERAIEKMNGMLL 60
Query: 101 GSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEV 160
+ V + + + +R +G K++ V++KN E +D+E LK F K+G + V
Sbjct: 61 NDRKVFVGRFKSRK-EREAELGARAKEFTN--VYIKNFGEDMDDERLKEVFGKYGPALSV 117
Query: 161 KIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
K++ DE+GKSKGFGF+ F ++ A+KA+ MNG+ + +V A+
Sbjct: 118 KVMTDESGKSKGFGFVSFERHEDAQKAVDXMNGKELNGKXIYVGRAQ 164
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 87/168 (51%), Gaps = 15/168 (8%)
Query: 136 KNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRM 195
KNL +++D + L F FGNI+ K+V DENG SKG+GF+ F + +AAE+AI +MNG +
Sbjct: 1 KNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVXFETQEAAERAIEKMNGML 59
Query: 196 IQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARK--NKIFVANLPSNINNSEFEELFARFG 253
+ FV G+ K + L K +++ N ++++ +E+F ++G
Sbjct: 60 LNDRKVFV-------GRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEVFGKYG 112
Query: 254 TITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
S +++D K GF+ F + A AV MNG K + V
Sbjct: 113 PALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDXMNGKELNGKXIYV 160
Score = 38.9 bits (89), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 38/71 (53%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+++ N +D++ L F K+G V+V +++ +S+GF + F +A+KA MN
Sbjct: 90 VYIKNFGEDMDDERLKEVFGKYGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDXMN 149
Query: 97 GHLIGSKPVII 107
G + K + +
Sbjct: 150 GKELNGKXIYV 160
>gi|219130188|ref|XP_002185253.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217403432|gb|EEC43385.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 605
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 73/267 (27%), Positives = 128/267 (47%), Gaps = 26/267 (9%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
++ L+V +L P V+ L F G + +RV R+ S G++ + F+ A+A++
Sbjct: 36 FQTPSLYVGDLAPDVNESLLFEIFSAVGPVASIRVCRDAVTRRSLGYSYVNFHQMADAER 95
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KP I + + P R VG +FVKNL E +D ++L
Sbjct: 96 AMDTMNFSMIKGKPCRIMWSQRDPSLRRSGVG---------NIFVKNLNEAIDNKQLYDT 146
Query: 151 FIKFGNIIEVKIVRD-ENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIV 209
F FGNI+ K+V D E G S G+G++ + + +AA AI +++G +I E+
Sbjct: 147 FSLFGNILSCKVVTDREGGVSMGYGYVHYETAEAANAAIEKLDGMLIDGQ-------EVQ 199
Query: 210 PGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKH---- 265
G + +P + ++ N+P +++ + FA+FG + S+++ +
Sbjct: 200 VGHFMRRNDRPDI---DSWTNCYIKNVPYEWDDARLNQEFAQFGEVLSATVSREDTNQTL 256
Query: 266 -IGFIEFIMPKHATHAVSTMNGHVFKS 291
GFI F + A AV +NG + +
Sbjct: 257 GFGFINFAEHESAVAAVEALNGKEYTT 283
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 71/286 (24%), Positives = 136/286 (47%), Gaps = 34/286 (11%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDE-SRGFAIIVFNTPAEAKKARVE- 94
+ V NL ++DN+ L + F FG + +V ++ S G+ + + T AEA A +E
Sbjct: 129 IFVKNLNEAIDNKQLYDTFSLFGNILSCKVVTDREGGVSMGYGYVHYET-AEAANAAIEK 187
Query: 95 MNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKF 154
++G LI + V + ++ R P+ + ++KN+ D+ L F +F
Sbjct: 188 LDGMLIDGQEVQVGHF-MRRNDR-----PDIDSWTN--CYIKNVPYEWDDARLNQEFAQF 239
Query: 155 GNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVS---LAEIVPG 211
G ++ + R++ ++ GFGFI F +++A A+ +NG+ ++ +T +I G
Sbjct: 240 GEVLSATVSREDTNQTLGFGFINFAEHESAVAAVEALNGK--EYTTTLDGEEITQQIYVG 297
Query: 212 KKV------------FPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSS 259
+ F K + + ++V NL ++ + + FA GTITS+
Sbjct: 298 RAQKKSERERELRAKFEAEKMDRISKFQGVNLYVKNLDDSVTDDMLRDEFAVMGTITSAR 357
Query: 260 LVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299
++ D + GF+ + P+ +T AV+ MNG + +KP+ V L+
Sbjct: 358 VMKDAKDGRSRGFGFVCYSTPEESTRAVNEMNGKLIANKPIFVALA 403
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 96/187 (51%), Gaps = 16/187 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
++ N+ D+ L EF +FG + V+R +++ GF I F A A +N
Sbjct: 218 CYIKNVPYEWDDARLNQEFAQFGEVLSATVSREDTNQTLGFGFINFAEHESAVAAVEALN 277
Query: 97 GH-----LIGSKPVIITFV--ELKPGQRSKPVGPEEKQYKKDKV--------FVKNLVET 141
G L G + +V K +R + + + + K D++ +VKNL ++
Sbjct: 278 GKEYTTTLDGEEITQQIYVGRAQKKSERERELRAKFEAEKMDRISKFQGVNLYVKNLDDS 337
Query: 142 VDEEELKSHFIKFGNIIEVKIVRD-ENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNS 200
V ++ L+ F G I ++++D ++G+S+GFGF+ + + + + +A+ EMNG++I +
Sbjct: 338 VTDDMLRDEFAVMGTITSARVMKDAKDGRSRGFGFVCYSTPEESTRAVNEMNGKLIANKP 397
Query: 201 TFVSLAE 207
FV+LA+
Sbjct: 398 IFVALAQ 404
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKND-ESRGFAIIVFNTPAEAKKARVEM 95
L+V NL+ SV + L +EF GT+ RV ++ D SRGF + ++TP E+ +A EM
Sbjct: 329 LYVKNLDDSVTDDMLRDEFAVMGTITSARVMKDAKDGRSRGFGFVCYSTPEESTRAVNEM 388
Query: 96 NGHLIGSKPVIITFVELKPGQRSK 119
NG LI +KP+ + + + +R++
Sbjct: 389 NGKLIANKPIFVALAQRREVRRAQ 412
>gi|402697295|gb|AFQ90835.1| polyA-binding protein cytoplasmic 1, partial [Sternotherus minor]
Length = 175
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/167 (35%), Positives = 98/167 (58%), Gaps = 4/167 (2%)
Query: 41 NLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLI 100
NL+ S+DN+AL + F FG + +V ++N S+G+ + F T A++A +MNG L+
Sbjct: 2 NLDKSJDNKALYDXFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLL 60
Query: 101 GSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEV 160
+ V + + + +R +G K++ V++KN E +D+E LK F FG + V
Sbjct: 61 NDRKVFVGRFKSRK-EREAXLGARAKEFTN--VYIKNFGEDMDDERLKELFGXFGPALSV 117
Query: 161 KIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
K++ DE+GKSKGFGF+ F ++ A+KA+ EMNG+ +V A+
Sbjct: 118 KVMTDESGKSKGFGFVSFERHEDAQKAVXEMNGKEXNGKQIYVXRAQ 164
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 86/168 (51%), Gaps = 15/168 (8%)
Query: 136 KNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRM 195
KNL +++D + L F FGNI+ K+V DENG SKG+GF+ F + +AAE+AI +MNG +
Sbjct: 1 KNLDKSJDNKALYDXFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGML 59
Query: 196 IQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARK--NKIFVANLPSNINNSEFEELFARFG 253
+ FV G+ K + L K +++ N ++++ +ELF FG
Sbjct: 60 LNDRKVFV-------GRFKSRKEREAXLGARAKEFTNVYIKNFGEDMDDERLKELFGXFG 112
Query: 254 TITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
S +++D K GF+ F + A AV MNG K + V
Sbjct: 113 PALSVKVMTDESGKSKGFGFVSFERHEDAQKAVXEMNGKEXNGKQIYV 160
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 7/87 (8%)
Query: 21 GARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAII 80
GAR+ KE VY + N +D++ L F FG V+V +++ +S+GF +
Sbjct: 81 GARA-KEFTNVY------IKNFGEDMDDERLKELFGXFGPALSVKVMTDESGKSKGFGFV 133
Query: 81 VFNTPAEAKKARVEMNGHLIGSKPVII 107
F +A+KA EMNG K + +
Sbjct: 134 SFERHEDAQKAVXEMNGKEXNGKQIYV 160
>gi|357117760|ref|XP_003560630.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
5-like [Brachypodium distachyon]
Length = 654
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 75/272 (27%), Positives = 130/272 (47%), Gaps = 32/272 (11%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
++V NLE SV Q L++ F + + VR+ +K S G+A + F++ +AK A
Sbjct: 33 VYVGNLEASVTEQQLLDLFSQAVPVVSVRICDDKVTGRSLGYAYVNFHSHEDAKVALEYF 92
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N ++ K + + F P R +F+KNL + + L F +FG
Sbjct: 93 NFTVVNGKSIRVMFSNRDPTLRRSGAA---------NLFIKNLEPNIVAKSLHQMFSRFG 143
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
I+ K+ D NGKSKG+GF+QF S ++A+ A+ +NG++ N GK+++
Sbjct: 144 IILSCKVATDLNGKSKGYGFVQFVSEESAKDAMNALNGKLANGN-----------GKQLY 192
Query: 216 PKV------KPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----K 264
+ + + ++ ++ NLP + + +FA FGTITS+ ++ D K
Sbjct: 193 VDLFIRREERQHIGGASKFTNVYTKNLPKEFTDDDLCRVFAPFGTITSAVVMKDGDGESK 252
Query: 265 HIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
GF+ + ++A AV +NG + L V
Sbjct: 253 CFGFVNYEKTEYAEEAVEKLNGKIISDVALYV 284
Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 72/267 (26%), Positives = 131/267 (49%), Gaps = 29/267 (10%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L + NLEP++ ++L F +FG + +VA + N +S+G+ + F + AK A +N
Sbjct: 121 LFIKNLEPNIVAKSLHQMFSRFGIILSCKVATDLNGKSKGYGFVQFVSEESAKDAMNALN 180
Query: 97 GHLI---GSKPVIITFVELKPGQRSKPVGPEEKQY-----KKDKVFVKNLVETVDEEELK 148
G L G + + F+ EE+Q+ K V+ KNL + +++L
Sbjct: 181 GKLANGNGKQLYVDLFIRR-----------EERQHIGGASKFTNVYTKNLPKEFTDDDLC 229
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE- 207
F FG I +++D +G+SK FGF+ + + AE+A+ ++NG++I + +V A+
Sbjct: 230 RVFAPFGTITSAVVMKDGDGESKCFGFVNYEKTEYAEEAVEKLNGKIISDVALYVGRAKR 289
Query: 208 ----IVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD 263
K+ F K + ++ ++ +++ NL +I++ LF RF I + ++ D
Sbjct: 290 KQERQAELKEKFDKERNDKIRKSKGCNLYLKNLDCSIDDEYLRNLFGRFDDIGTCKVMVD 349
Query: 264 -----KHIGFIEFIMPKHATHAVSTMN 285
K GF+ F + A AVS N
Sbjct: 350 SEGRSKGFGFVLFTTIEAANKAVSXRN 376
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 92/180 (51%), Gaps = 10/180 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
++ NL + L F FGT+ V ++ + ES+ F + + A++A ++N
Sbjct: 214 VYTKNLPKEFTDDDLCRVFAPFGTITSAVVMKDGDGESKCFGFVNYEKTEYAEEAVEKLN 273
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKV--------FVKNLVETVDEEELK 148
G +I + + + K +R + + + + DK+ ++KNL ++D+E L+
Sbjct: 274 GKIISDVALYVGRAKRK-QERQAELKEKFDKERNDKIRKSKGCNLYLKNLDCSIDDEYLR 332
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGR-MIQHNSTFVSLAE 207
+ F +F +I K++ D G+SKGFGF+ F + +AA KA+ N R ++ +V +A+
Sbjct: 333 NLFGRFDDIGTCKVMVDSEGRSKGFGFVLFTTIEAANKAVSXRNERKLVGTKLLYVCVAQ 392
Score = 42.4 bits (98), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 3/91 (3%)
Query: 26 KENNKVYKE--NELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFN 83
+ N+K+ K L++ NL+ S+D++ L N F +F + +V + S+GF ++F
Sbjct: 304 ERNDKIRKSKGCNLYLKNLDCSIDDEYLRNLFGRFDDIGTCKVMVDSEGRSKGFGFVLFT 363
Query: 84 TPAEAKKARVEMNGH-LIGSKPVIITFVELK 113
T A KA N L+G+K + + + K
Sbjct: 364 TIEAANKAVSXRNERKLVGTKLLYVCVAQRK 394
>gi|325182450|emb|CCA16902.1| polyadenylatebinding protein putative [Albugo laibachii Nc14]
Length = 675
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 76/286 (26%), Positives = 136/286 (47%), Gaps = 32/286 (11%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ V NL+PS+DN+AL + F FG + +VA + +S+G+ + + T A +A ++N
Sbjct: 166 IFVKNLDPSIDNKALYDTFSLFGNILSCKVANDPTGQSKGYGYVHYETAEAATEAINKIN 225
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKD--KVFVKNLVETVDEEELKSHFIKF 154
G LI V + + + +E+ +D +VKNL + +L+ F F
Sbjct: 226 GMLIAGTEVFVGHFQKR----------QERPDIEDWTNCYVKNLPTQWTDADLRREFEPF 275
Query: 155 GNIIEVKIVRDENGKS-KGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGK- 212
G + +++D N + +GFGF+ + A A+ ++G+ + V L E+ GK
Sbjct: 276 GQVNSAVVMKDPNSATNRGFGFVNYEDADGAHAAVEGLSGKTFK-GVNGVDL-ELYVGKA 333
Query: 213 -----------KVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLV 261
+ F ++K + + ++V NL + + E E F +GTITS+ ++
Sbjct: 334 QKRTERERELRQKFDQLKLERINKYQGVNLYVKNLDDLLQDEELREAFTNYGTITSARVM 393
Query: 262 SD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
D + GF+ F P+ A AV+ MNG + KP+ V + K
Sbjct: 394 RDSTGNSRGFGFVCFSTPEEAATAVAEMNGKLITGKPVYVAFAQRK 439
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 71/267 (26%), Positives = 123/267 (46%), Gaps = 26/267 (9%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
++ L+V ++ P V L F G + +RV R+ S G+A + F+ +A++
Sbjct: 73 FQTASLYVGDIHPDVTEALLFEIFNAVGPVASIRVCRDAVTRRSLGYAYVNFHNLVDAER 132
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN I P I + + P R VG +FVKNL ++D + L
Sbjct: 133 ALDTMNFTCIKGVPCRIMWSQRDPSLRKSGVG---------NIFVKNLDPSIDNKALYDT 183
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVP 210
F FGNI+ K+ D G+SKG+G++ + + +AA +AI ++NG +I FV +
Sbjct: 184 FSLFGNILSCKVANDPTGQSKGYGYVHYETAEAATEAINKINGMLIAGTEVFVGHFQ--- 240
Query: 211 GKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------K 264
++ P ++ +V NLP+ +++ F FG + S+ ++ D +
Sbjct: 241 KRQERPDIE-------DWTNCYVKNLPTQWTDADLRREFEPFGQVNSAVVMKDPNSATNR 293
Query: 265 HIGFIEFIMPKHATHAVSTMNGHVFKS 291
GF+ + A AV ++G FK
Sbjct: 294 GFGFVNYEDADGAHAAVEGLSGKTFKG 320
Score = 70.9 bits (172), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 50/88 (56%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L+V NL+ + ++ L F +GT+ RV R+ SRGF + F+TP EA A
Sbjct: 358 YQGVNLYVKNLDDLLQDEELREAFTNYGTITSARVMRDSTGNSRGFGFVCFSTPEEAATA 417
Query: 92 RVEMNGHLIGSKPVIITFVELKPGQRSK 119
EMNG LI KPV + F + K +R++
Sbjct: 418 VAEMNGKLITGKPVYVAFAQRKEVRRAQ 445
>gi|198422488|ref|XP_002121866.1| PREDICTED: similar to poly(A) binding protein, cytoplasmic 4
(inducible form) [Ciona intestinalis]
Length = 270
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 74/271 (27%), Positives = 129/271 (47%), Gaps = 25/271 (9%)
Query: 25 NKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFN 83
N + Y L+V +L V L +F + G + +RV R+ S G+A + F
Sbjct: 2 NSSGSTNYPMASLYVGDLHLDVTEAMLYEKFSQAGPVLSIRVCRDVITRRSLGYAYVNFQ 61
Query: 84 TPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVD 143
PA+A++A MN I +P+ I + + P R VG +F+KNL +++D
Sbjct: 62 QPADAERALDTMNYDPIKGRPIRIMWSQRDPSLRKSGVG---------NIFIKNLDKSID 112
Query: 144 EEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFV 203
+ L F FGNI+ K+ +ENG SKG+GF+ F + +A +AI ++NG ++ FV
Sbjct: 113 NKALYDTFSAFGNILSCKVSCNENG-SKGYGFVHFETEEAGIRAIEKVNGMLLNDKKVFV 171
Query: 204 S--LAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLV 261
L KK+ +V+ + +++ N + + +F ++G + S +++
Sbjct: 172 GKFLTRSERIKKMGERVR-------QFTNVYIKNFGDKYDEKTLQVMFEKYGVVKSVAVM 224
Query: 262 SDKH-----IGFIEFIMPKHATHAVSTMNGH 287
D+ GF+ + + A AV MNG
Sbjct: 225 RDRDGNSRGFGFVAYDSHEEAQAAVEAMNGQ 255
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 96/166 (57%), Gaps = 4/166 (2%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S+DN+AL + F FG + +V+ N+N S+G+ + F T +A ++N
Sbjct: 102 IFIKNLDKSIDNKALYDTFSAFGNILSCKVSCNENG-SKGYGFVHFETEEAGIRAIEKVN 160
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G L+ K V + L +R K +G +Q+ V++KN + DE+ L+ F K+G
Sbjct: 161 GMLLNDKKVFVGKF-LTRSERIKKMGERVRQFTN--VYIKNFGDKYDEKTLQVMFEKYGV 217
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTF 202
+ V ++RD +G S+GFGF+ + S++ A+ A+ MNG+ I+ S +
Sbjct: 218 VKSVAVMRDRDGNSRGFGFVAYDSHEEAQAAVEAMNGQEIEGASGW 263
>gi|71659594|ref|XP_821518.1| polyadenylate-binding protein 1 [Trypanosoma cruzi strain CL
Brener]
gi|70886900|gb|EAN99667.1| polyadenylate-binding protein 1, putative [Trypanosoma cruzi]
Length = 570
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 80/262 (30%), Positives = 124/262 (47%), Gaps = 42/262 (16%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L+P V L+ FK FGT+ +VRV R+ S G+ + FN+ A KA +
Sbjct: 31 LYVGDLDPVVTEPHLVELFKPFGTILNVRVCRDIITQRSLGYGYVNFNSHDSAAKAMEAL 90
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N +G K + I + + P R G +FVKNL VD EL F KFG
Sbjct: 91 NFKRVGDKCMRIMWQQRDPTLRYSGNG---------NIFVKNLKNEVDSRELSVIFKKFG 141
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNG---------RMIQHNSTFV--- 203
+I+ K++ DE GKS+G+GF+ F + AA++AI MNG +M + + F+
Sbjct: 142 DILSCKVMEDEEGKSRGYGFVHFKNDNAAKEAIENMNGEKDHADEEKKMGLYVANFIRRN 201
Query: 204 -SLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
LA +V A +++ + ++ E+ F++FG ITSS+
Sbjct: 202 ARLATLV----------------ANFTNVYIKQVLPTVDKEVIEKFFSKFGGITSSATCK 245
Query: 263 DKH---IGFIEFIMPKHATHAV 281
DK+ F F + A A+
Sbjct: 246 DKNGRVFAFCNFEKHEDAVKAI 267
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 75/286 (26%), Positives = 128/286 (44%), Gaps = 40/286 (13%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ V NL+ VD++ L FKKFG + +V ++ +SRG+ + F AK+A MN
Sbjct: 119 IFVKNLKNEVDSRELSVIFKKFGDILSCKVMEDEEGKSRGYGFVHFKNDNAAKEAIENMN 178
Query: 97 G---HLIGSKPV---IITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
G H K + + F+ +R+ + + V++K ++ TVD+E ++
Sbjct: 179 GEKDHADEEKKMGLYVANFI-----RRNARLATLVANFTN--VYIKQVLPTVDKEVIEKF 231
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVP 210
F KFG I +D+NG+ F F F ++ A KAI + + + + P
Sbjct: 232 FSKFGGITSSATCKDKNGRV--FAFCNFEKHEDAVKAIEASHEQFVD--------GVVPP 281
Query: 211 GKKVFPKVKPP----LLQPARK--------NKIFVANLPSNINNSEFEELFARFGTITSS 258
G+K++ + P L+ +K N ++V N ELF +G I S
Sbjct: 282 GEKLYVQRAQPRSERLIALRQKYMQCQTLGNNLYVRNFDPEFTEENLHELFKEYGVIRSC 341
Query: 259 SLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299
+++D + GF+ F A A+ MNG + KPL V ++
Sbjct: 342 RVMTDANGNSRGFGFVSFENADQANAALREMNGRMLNGKPLIVNIA 387
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 84/177 (47%), Gaps = 8/177 (4%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+++ + P+VD + + F KFG + ++KN R FA F +A KA +
Sbjct: 214 VYIKQVLPTVDKEVIEKFFSKFGGITSSATCKDKN--GRVFAFCNFEKHEDAVKAIEASH 271
Query: 97 GHLI-GSKPVIITFVELKPGQRSKPVGPEEKQYKK-----DKVFVKNLVETVDEEELKSH 150
+ G P + RS+ + ++Y + + ++V+N EE L
Sbjct: 272 EQFVDGVVPPGEKLYVQRAQPRSERLIALRQKYMQCQTLGNNLYVRNFDPEFTEENLHEL 331
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
F ++G I +++ D NG S+GFGF+ F + A A+ EMNGRM+ V++A+
Sbjct: 332 FKEYGVIRSCRVMTDANGNSRGFGFVSFENADQANAALREMNGRMLNGKPLIVNIAQ 388
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 42/79 (53%)
Query: 35 NELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVE 94
N L+V N +P + L FK++G +R RV + N SRGF + F +A A E
Sbjct: 312 NNLYVRNFDPEFTEENLHELFKEYGVIRSCRVMTDANGNSRGFGFVSFENADQANAALRE 371
Query: 95 MNGHLIGSKPVIITFVELK 113
MNG ++ KP+I+ + +
Sbjct: 372 MNGRMLNGKPLIVNIAQRR 390
>gi|209881749|ref|XP_002142312.1| polyadenylate-binding protein [Cryptosporidium muris RN66]
gi|209557918|gb|EEA07963.1| polyadenylate-binding protein, putative [Cryptosporidium muris
RN66]
Length = 723
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 82/279 (29%), Positives = 128/279 (45%), Gaps = 31/279 (11%)
Query: 28 NNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPA 86
NN V L+V +L+P V L F + VR+ R+ S G+A + +N+ A
Sbjct: 5 NNIVQVSASLYVGDLDPDVTETMLYEIFNSVAVVSSVRICRDALTRRSLGYAYVNYNSVA 64
Query: 87 EAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEE 146
+A++A +N I S+P I + P R G VFVKNL +++D +
Sbjct: 65 DAERALDTLNFTCIRSRPCRIMWCLRDPASRRNNEG---------NVFVKNLDKSIDNKT 115
Query: 147 LKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLA 206
L F FGNI+ KI D G S G+GFI F ++A++AI +NG ++ +V
Sbjct: 116 LFDTFSLFGNIMSCKIATDSEGNSLGYGFIHFEHPESAKEAIARLNGMILGDRPIYVG-- 173
Query: 207 EIVPGKKVFPKVKPPLLQPARKNK----IFVANLPSNINNSEFEELFARFGTITSSSLVS 262
K + + + K+K ++V ++P + LF +G I+S L S
Sbjct: 174 ----------KFQRKAERFSEKDKTFTNVYVKHIPKTWSEETLHTLFGVYGKISSLVLQS 223
Query: 263 D---KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTL 298
D + GF+ F P+ A AV+ + H PL V L
Sbjct: 224 DSKGRPFGFVNFEDPESAKKAVANL--HNALVTPLGVEL 260
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 52/83 (62%)
Query: 125 EKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAA 184
+ +Y+ ++VKNL E++ E +L+S F +G I V I DE+G S+GFGF+ F S A
Sbjct: 354 QNRYQGVNLYVKNLSESMTESDLRSLFEPYGTISSVSIKTDESGISRGFGFVSFLSPDEA 413
Query: 185 EKAIIEMNGRMIQHNSTFVSLAE 207
KAI EM+ ++++ +V L E
Sbjct: 414 TKAITEMHLKLVRGKPLYVGLHE 436
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 51/97 (52%), Gaps = 3/97 (3%)
Query: 17 SDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRG 76
S E AR E+ Y+ L+V NL S+ L + F+ +GT+ V + +++ SRG
Sbjct: 345 SQHEAAR---ESQNRYQGVNLYVKNLSESMTESDLRSLFEPYGTISSVSIKTDESGISRG 401
Query: 77 FAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELK 113
F + F +P EA KA EM+ L+ KP+ + E K
Sbjct: 402 FGFVSFLSPDEATKAITEMHLKLVRGKPLYVGLHERK 438
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 5/73 (6%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMN 285
++V NL ++ S+ LF +GTI+S S+ +D + GF+ F+ P AT A++ M+
Sbjct: 362 LYVKNLSESMTESDLRSLFEPYGTISSVSIKTDESGISRGFGFVSFLSPDEATKAITEMH 421
Query: 286 GHVFKSKPLKVTL 298
+ + KPL V L
Sbjct: 422 LKLVRGKPLYVGL 434
>gi|242077714|ref|XP_002448793.1| hypothetical protein SORBIDRAFT_06g033290 [Sorghum bicolor]
gi|241939976|gb|EES13121.1| hypothetical protein SORBIDRAFT_06g033290 [Sorghum bicolor]
Length = 1076
Score = 105 bits (261), Expect = 4e-20, Method: Composition-based stats.
Identities = 73/273 (26%), Positives = 129/273 (47%), Gaps = 20/273 (7%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L V NL PS+ + LI F FG + RV + S+G+ + ++ P A +A M
Sbjct: 231 LFVGNLPPSLASHKLIELFLPFGRIVKSRVVDDCFTGSSKGYGFVQYSDPRYAAEAIKHM 290
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
NG ++ + + + P K+ K++V NL + E++L F+ +G
Sbjct: 291 NGRMVEGRMLEVRLA-------GAPSSGSTKEMDMSKLYVCNLPLLLHEDKLHDLFVPYG 343
Query: 156 NIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGK-- 212
+ VK++RD G SKG+GF+++ + A AI ++NG +I+ V +A +
Sbjct: 344 QVTSVKVMRDHATGLSKGYGFVRYSDPQHAAHAIFQLNGHLIEGKKMEVRVAAVSSSGSN 403
Query: 213 ---KVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------ 263
+ + L + + ++V NLP +N + LF +G +TS+ + D
Sbjct: 404 TSVQAISETDHQLTKEVDMSNVYVQNLPLLMNTDKLLNLFLPYGKVTSAKVAMDYTSGIS 463
Query: 264 KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
K GF++F P A HAV +NG + + + + V
Sbjct: 464 KGYGFVKFSDPHDAAHAVIELNGCLVEGRKILV 496
Score = 89.7 bits (221), Expect = 2e-15, Method: Composition-based stats.
Identities = 56/191 (29%), Positives = 97/191 (50%), Gaps = 16/191 (8%)
Query: 126 KQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRD-ENGKSKGFGFIQFFSYKAA 184
K+ +FV NL ++ +L F+ FG I++ ++V D G SKG+GF+Q+ + A
Sbjct: 224 KEGNGTNLFVGNLPPSLASHKLIELFLPFGRIVKSRVVDDCFTGSSKGYGFVQYSDPRYA 283
Query: 185 EKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSE 244
+AI MNGRM++ V LA + +K++V NLP ++ +
Sbjct: 284 AEAIKHMNGRMVEGRMLEVRLAGAPSSGST---------KEMDMSKLYVCNLPLLLHEDK 334
Query: 245 FEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTL 298
+LF +G +TS ++ D K GF+ + P+HA HA+ +NGH+ + K ++V +
Sbjct: 335 LHDLFVPYGQVTSVKVMRDHATGLSKGYGFVRYSDPQHAAHAIFQLNGHLIEGKKMEVRV 394
Query: 299 SGTKPGVSITN 309
+ S T+
Sbjct: 395 AAVSSSGSNTS 405
Score = 89.4 bits (220), Expect = 2e-15, Method: Composition-based stats.
Identities = 69/283 (24%), Positives = 135/283 (47%), Gaps = 26/283 (9%)
Query: 35 NELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDE-SRGFAIIVFNTPAEAKKARV 93
+ ++V NL ++ L+N F +G + +VA + S+G+ + F+ P +A A +
Sbjct: 423 SNVYVQNLPLLMNTDKLLNLFLPYGKVTSAKVAMDYTSGISKGYGFVKFSDPHDAAHAVI 482
Query: 94 EMNGHLIGSKPVIITFVELKPGQRSKPVGPEE--------KQYKKDKVFVKNLVETVDEE 145
E+NG L+ + ++ V ++P P P E K+ ++V N+ ++++
Sbjct: 483 ELNGCLVEGRKIL---VRVRP-----PSSPVESHANNRTLKEIDMSNLYVCNIPSSMNKA 534
Query: 146 ELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL 205
+L F+ FG I +V N SKG+GF++F A +A+ MNG +I+ + V +
Sbjct: 535 KLVELFLPFGRITHAMVVEQSNNSSKGYGFVKFADSHCAAEAVAMMNGALIEGETISVRV 594
Query: 206 AEIVPGKKVFPKVKPPLLQ----PARKN-KIFVANLPSNINNSEFEELFARFGTITSSSL 260
A + P P + P N +++V NLP ++ + LF FG I +
Sbjct: 595 AGLSPSVSSSVSQHSPHSEINASPEINNCRLYVTNLPQTMSADKLVSLFMPFGQIDRVVM 654
Query: 261 VSDKHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKP 303
++ F+ + A A+ M+G++ + K ++ + G++P
Sbjct: 655 YAE--YSFVLYADINSAAKALKHMDGYLIEGK--RLVVKGSEP 693
Score = 71.6 bits (174), Expect = 5e-10, Method: Composition-based stats.
Identities = 66/304 (21%), Positives = 126/304 (41%), Gaps = 21/304 (6%)
Query: 28 NNKVYKE---NELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNT 84
NN+ KE + L+V N+ S++ L+ F FG + V N+ S+G+ + F
Sbjct: 510 NNRTLKEIDMSNLYVCNIPSSMNKAKLVELFLPFGRITHAMVVEQSNNSSKGYGFVKFAD 569
Query: 85 PAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPE-------EKQYKKDKVFVKN 137
A +A MNG LI + + + L P S + +++V N
Sbjct: 570 SHCAAEAVAMMNGALIEGETISVRVAGLSPSVSSSVSQHSPHSEINASPEINNCRLYVTN 629
Query: 138 LVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQ 197
L +T+ ++L S F+ FG I V + + + F+ + +A KA+ M+G +I+
Sbjct: 630 LPQTMSADKLVSLFMPFGQIDRVVMYAE-------YSFVLYADINSAAKALKHMDGYLIE 682
Query: 198 HNSTFVSLAEIVP---GKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGT 254
V +E +P + + L++ ++V +PS + + ++F +G
Sbjct: 683 GKRLVVKGSEPLPANAAQSACSQSGSKLVKEIDMANLYVGRVPSAVTCEQLVQIFCLYGE 742
Query: 255 ITSSSLVSDKHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKPGVSITNPTKAP 314
I + D G I + A A+ ++G+ L V ++G + + P
Sbjct: 743 IVQAKKF-DAGYGMIRYANASSAAAAIDHLDGYQIGGSTLVVRVAGLPAESDVATFARTP 801
Query: 315 KKPA 318
+ P
Sbjct: 802 QTPG 805
Score = 63.9 bits (154), Expect = 9e-08, Method: Composition-based stats.
Identities = 65/284 (22%), Positives = 120/284 (42%), Gaps = 31/284 (10%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L+V NL ++ L++ F FG + V + ++ +++ A KA M+
Sbjct: 625 LYVTNLPQTMSADKLVSLFMPFGQIDRVVMYAE-------YSFVLYADINSAAKALKHMD 677
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEE-----KQYKKDKVFVKNLVETVDEEELKSHF 151
G+LI K +++ E P ++ + K+ ++V + V E+L F
Sbjct: 678 GYLIEGKRLVVKGSEPLPANAAQSACSQSGSKLVKEIDMANLYVGRVPSAVTCEQLVQIF 737
Query: 152 IKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPG 211
+G I++ K G+G I++ + +A AI ++G I ++ V +A +
Sbjct: 738 CLYGEIVQAKKF------DAGYGMIRYANASSAAAAIDHLDGYQIGGSTLVVRVAGLPAE 791
Query: 212 KKVFPKVKPPLLQPARKNK------IFVANLPSNINNSEFEELFARFGTITSSSLVSDKH 265
V + P P +++ ++V LP + + ELF G IT + +V DK
Sbjct: 792 SDVATFARTPQ-TPGNEHRQIDMTNLYVGYLPPYVTTDKLIELFLPCGQITQAKVVVDKF 850
Query: 266 ------IGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKP 303
GF+ F A A++ MNG+ L V +G +P
Sbjct: 851 TGVSKGFGFVRFADAYSAATAITHMNGYPLDGHMLAVRTAGVQP 894
Score = 53.1 bits (126), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 6/84 (7%)
Query: 223 LQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKH 276
L+ +FV NLP ++ + + ELF FG I S +V D K GF+++ P++
Sbjct: 223 LKEGNGTNLFVGNLPPSLASHKLIELFLPFGRIVKSRVVDDCFTGSSKGYGFVQYSDPRY 282
Query: 277 ATHAVSTMNGHVFKSKPLKVTLSG 300
A A+ MNG + + + L+V L+G
Sbjct: 283 AAEAIKHMNGRMVEGRMLEVRLAG 306
Score = 48.9 bits (115), Expect = 0.003, Method: Composition-based stats.
Identities = 50/197 (25%), Positives = 89/197 (45%), Gaps = 17/197 (8%)
Query: 25 NKENNKVYKENE---LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIV 81
++ +K+ KE + L+V + +V + L+ F +G + V K D G+ +I
Sbjct: 704 SQSGSKLVKEIDMANLYVGRVPSAVTCEQLVQIFCLYGEI----VQAKKFDA--GYGMIR 757
Query: 82 FNTPAEAKKARVEMNGHLIGSKPVIITFVELKP-------GQRSKPVGPEEKQYKKDKVF 134
+ + A A ++G+ IG +++ L + + G E +Q ++
Sbjct: 758 YANASSAAAAIDHLDGYQIGGSTLVVRVAGLPAESDVATFARTPQTPGNEHRQIDMTNLY 817
Query: 135 VKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEMNG 193
V L V ++L F+ G I + K+V D+ G SKGFGF++F +A AI MNG
Sbjct: 818 VGYLPPYVTTDKLIELFLPCGQITQAKVVVDKFTGVSKGFGFVRFADAYSAATAITHMNG 877
Query: 194 RMIQHNSTFVSLAEIVP 210
+ + V A + P
Sbjct: 878 YPLDGHMLAVRTAGVQP 894
>gi|7673359|gb|AAF66825.1| poly(A)-binding protein [Nicotiana tabacum]
Length = 479
Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 75/227 (33%), Positives = 119/227 (52%), Gaps = 19/227 (8%)
Query: 88 AKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEEL 147
A+ A ++NG L+ K V + L+ +R G K V+VKNL E+ ++ L
Sbjct: 1 AQGAIDKLNGMLMNDKQVYVGHF-LRKQERESTTG----MTKFQNVYVKNLSESTTDDGL 55
Query: 148 KSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
K F +FGNI ++RD +GKSK FGFI F + + A KA+ +NG+ +V A+
Sbjct: 56 KKVFGEFGNITSAVVMRDADGKSKCFGFINFETAEDAAKAVESLNGKKFDDKEWYVGKAQ 115
Query: 208 IVPGKKVFPKVKPPLLQPARKN-------KIFVANLPSNINNSEFEELFARFGTITSSSL 260
++ ++K Q A++ ++V NL I++ + +ELF+ FGTITS +
Sbjct: 116 KKSEREQ--ELKSKFEQTAKEAVDKYQGLNLYVKNLDDTIDDEKLKELFSEFGTITSCKV 173
Query: 261 VSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
+ D + GF+ F + A+ A+S MNG + SKPL V L+ K
Sbjct: 174 MRDPSGISRGSGFVAFSTSEEASRALSEMNGKMIVSKPLYVALAQRK 220
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 97/179 (54%), Gaps = 9/179 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
++V NL S + L F +FG + V R+ + +S+ F I F T +A KA +N
Sbjct: 41 VYVKNLSESTTDDGLKKVFGEFGNITSAVVMRDADGKSKCFGFINFETAEDAAKAVESLN 100
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKV--------FVKNLVETVDEEELK 148
G K + + K +R + + + +Q K+ V +VKNL +T+D+E+LK
Sbjct: 101 GKKFDDKEWYVGKAQ-KKSEREQELKSKFEQTAKEAVDKYQGLNLYVKNLDDTIDDEKLK 159
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
F +FG I K++RD +G S+G GF+ F + + A +A+ EMNG+MI +V+LA+
Sbjct: 160 ELFSEFGTITSCKVMRDPSGISRGSGFVAFSTSEEASRALSEMNGKMIVSKPLYVALAQ 218
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 57/97 (58%)
Query: 23 RSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVF 82
++ KE Y+ L+V NL+ ++D++ L F +FGT+ +V R+ + SRG + F
Sbjct: 130 QTAKEAVDKYQGLNLYVKNLDDTIDDEKLKELFSEFGTITSCKVMRDPSGISRGSGFVAF 189
Query: 83 NTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSK 119
+T EA +A EMNG +I SKP+ + + K +R+K
Sbjct: 190 STSEEASRALSEMNGKMIVSKPLYVALAQRKEERRAK 226
>gi|392355792|ref|XP_228576.4| PREDICTED: polyadenylate-binding protein, cytoplasmic and
nuclear-like [Rattus norvegicus]
Length = 456
Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 93/180 (51%), Gaps = 11/180 (6%)
Query: 25 NKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFN 83
+ + N + L+V +L P V L +F G + +R+ R+K S G+A + +
Sbjct: 248 SDDGNPDFPTASLYVGDLHPEVTESMLYEKFSPAGPILSIRLCRDKVTRRSLGYAYVNYQ 307
Query: 84 TPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVD 143
P +AK+A MN +I +PV I + + P R VG VF+KNL +T+D
Sbjct: 308 QPVDAKRALETMNFDVINGRPVRIMWSQRDPSLRKSGVG---------NVFIKNLGKTID 358
Query: 144 EEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFV 203
+ L + F FGNI+ K+ DE G KG+GF+ F ++AE+AI +NG + + FV
Sbjct: 359 NKALYNIFSAFGNILSCKVACDEKGP-KGYGFVHFQKQESAERAIDALNGMFLNYRKIFV 417
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 71/159 (44%), Gaps = 16/159 (10%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEM 191
++V +L V E L F G I+ +++ RD+ +S G+ ++ + A++A+ M
Sbjct: 260 LYVGDLHPEVTESMLYEKFSPAGPILSIRLCRDKVTRRSLGYAYVNYQQPVDAKRALETM 319
Query: 192 NGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFAR 251
N +I + ++ + P L+ + +F+ NL I+N +F+
Sbjct: 320 NFDVINGRPVRIMWSQ-----------RDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSA 368
Query: 252 FGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNG 286
FG I S + D K GF+ F + A A+ +NG
Sbjct: 369 FGNILSCKVACDEKGPKGYGFVHFQKQESAERAIDALNG 407
>gi|385281386|gb|AFI57844.1| polyA binding protein, partial [Cocos nucifera]
Length = 352
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 74/233 (31%), Positives = 121/233 (51%), Gaps = 16/233 (6%)
Query: 81 VFNTPAEAKKARVE-MNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLV 139
++ P EA +E +NG L+ K V + P R + K + VFVKNL
Sbjct: 1 IYVDPEEAAHNAIEKLNGMLLNDKKVFVG-----PFLRKQDRENTANSTKFNNVFVKNLS 55
Query: 140 ETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHN 199
E+ E+ L F ++GNI ++R+ +GKSK FGF+ F + A KA+ E+NG+
Sbjct: 56 ESTTEDNLLEIFGEYGNITSAVVMREGDGKSKCFGFVNFEDPEHAAKAVKELNGKKFDGK 115
Query: 200 STFVSLAEIVPGKKVFPKVK--PPLLQPARKNK---IFVANLPSNINNSEFEELFARFGT 254
+V A+ +++ K + + + A KN+ +++ NL +I + + ELF+ FG+
Sbjct: 116 EWYVGKAQKKSEREMELKGRFEQRMQEAADKNQGANLYLKNLDDSIGDDKLRELFSEFGS 175
Query: 255 ITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
ITS ++ D + GF+ F P A+ A++ MNG + SKPL V L+ K
Sbjct: 176 ITSCKVMRDPNGVSRGSGFVAFQSPDDASKALAEMNGKMIGSKPLYVALAQRK 228
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 101/192 (52%), Gaps = 9/192 (4%)
Query: 23 RSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVF 82
R N N+ + N + V NL S L+ F ++G + V R + +S+ F + F
Sbjct: 37 RENTANSTKF--NNVFVKNLSESTTEDNLLEIFGEYGNITSAVVMREGDGKSKCFGFVNF 94
Query: 83 NTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKK--DK-----VFV 135
P A KA E+NG K + + K + + G E++ ++ DK +++
Sbjct: 95 EDPEHAAKAVKELNGKKFDGKEWYVGKAQKKSEREMELKGRFEQRMQEAADKNQGANLYL 154
Query: 136 KNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRM 195
KNL +++ +++L+ F +FG+I K++RD NG S+G GF+ F S A KA+ EMNG+M
Sbjct: 155 KNLDDSIGDDKLRELFSEFGSITSCKVMRDPNGVSRGSGFVAFQSPDDASKALAEMNGKM 214
Query: 196 IQHNSTFVSLAE 207
I +V+LA+
Sbjct: 215 IGSKPLYVALAQ 226
>gi|426396432|ref|XP_004064447.1| PREDICTED: uncharacterized protein LOC101125114 [Gorilla gorilla
gorilla]
Length = 533
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 94/180 (52%), Gaps = 11/180 (6%)
Query: 25 NKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFN 83
+ E N ++ L+V +L P V L +F G + +R+ R+K S G+A + +
Sbjct: 325 DCEGNPDFQMASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQ 384
Query: 84 TPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVD 143
P +AK+A +N +I +PV I + + P R VG VF+KNL +T+D
Sbjct: 385 QPVDAKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVG---------NVFIKNLGKTID 435
Query: 144 EEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFV 203
+ L + F FGNI+ K+ DE G KG+GF+ F ++AE+AI MNG + + FV
Sbjct: 436 NKALYNIFSAFGNILSCKVACDEKGP-KGYGFVHFQKQESAERAIDVMNGMFLNYRKIFV 494
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 74/164 (45%), Gaps = 16/164 (9%)
Query: 128 YKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEK 186
++ ++V +L V E L F G I+ ++I RD+ +S G+ ++ + A++
Sbjct: 332 FQMASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKR 391
Query: 187 AIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFE 246
A+ +N +I+ + ++ + P L+ + +F+ NL I+N
Sbjct: 392 ALETLNFDVIKGRPVRIMWSQ-----------RDPSLRKSGVGNVFIKNLGKTIDNKALY 440
Query: 247 ELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNG 286
+F+ FG I S + D K GF+ F + A A+ MNG
Sbjct: 441 NIFSAFGNILSCKVACDEKGPKGYGFVHFQKQESAERAIDVMNG 484
>gi|395754119|ref|XP_002831853.2| PREDICTED: uncharacterized protein LOC100437512 [Pongo abelii]
Length = 528
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 93/180 (51%), Gaps = 11/180 (6%)
Query: 25 NKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFN 83
+ E N + L+V +L P V L +F G + +R+ R+K S G+A + +
Sbjct: 320 DWEGNPDFPMASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQ 379
Query: 84 TPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVD 143
P +AK+A +N +I +PV I + + P R VG VF+KNL +T+D
Sbjct: 380 QPVDAKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVG---------NVFIKNLGKTID 430
Query: 144 EEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFV 203
+ L + F FGNI+ K+ DE G KG+GF+ F ++AE+AI MNG + + FV
Sbjct: 431 NKALYNIFSAFGNILSCKVACDEKGP-KGYGFVHFQKQESAERAIDVMNGMFLNYRKIFV 489
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 72/159 (45%), Gaps = 16/159 (10%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEM 191
++V +L V E L F G I+ ++I RD+ +S G+ ++ + A++A+ +
Sbjct: 332 LYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETL 391
Query: 192 NGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFAR 251
N +I+ + ++ + P L+ + +F+ NL I+N +F+
Sbjct: 392 NFDVIKGRPVRIMWSQ-----------RDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSA 440
Query: 252 FGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNG 286
FG I S + D K GF+ F + A A+ MNG
Sbjct: 441 FGNILSCKVACDEKGPKGYGFVHFQKQESAERAIDVMNG 479
>gi|293351002|ref|XP_001054954.2| PREDICTED: polyadenylate-binding protein, cytoplasmic and
nuclear-like [Rattus norvegicus]
Length = 438
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 93/180 (51%), Gaps = 11/180 (6%)
Query: 25 NKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFN 83
+ + N + L+V +L P V L +F G + +R+ R+K S G+A + +
Sbjct: 230 SDDGNPDFPTASLYVGDLHPEVTESMLYEKFSPAGPILSIRLCRDKVTRRSLGYAYVNYQ 289
Query: 84 TPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVD 143
P +AK+A MN +I +PV I + + P R VG VF+KNL +T+D
Sbjct: 290 QPVDAKRALETMNFDVINGRPVRIMWSQRDPSLRKSGVG---------NVFIKNLGKTID 340
Query: 144 EEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFV 203
+ L + F FGNI+ K+ DE G KG+GF+ F ++AE+AI +NG + + FV
Sbjct: 341 NKALYNIFSAFGNILSCKVACDEKGP-KGYGFVHFQKQESAERAIDALNGMFLNYRKIFV 399
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 71/159 (44%), Gaps = 16/159 (10%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEM 191
++V +L V E L F G I+ +++ RD+ +S G+ ++ + A++A+ M
Sbjct: 242 LYVGDLHPEVTESMLYEKFSPAGPILSIRLCRDKVTRRSLGYAYVNYQQPVDAKRALETM 301
Query: 192 NGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFAR 251
N +I + ++ + P L+ + +F+ NL I+N +F+
Sbjct: 302 NFDVINGRPVRIMWSQ-----------RDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSA 350
Query: 252 FGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNG 286
FG I S + D K GF+ F + A A+ +NG
Sbjct: 351 FGNILSCKVACDEKGPKGYGFVHFQKQESAERAIDALNG 389
>gi|156846854|ref|XP_001646313.1| hypothetical protein Kpol_1032p49 [Vanderwaltozyma polyspora DSM
70294]
gi|156116988|gb|EDO18455.1| hypothetical protein Kpol_1032p49 [Vanderwaltozyma polyspora DSM
70294]
Length = 580
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 89/268 (33%), Positives = 126/268 (47%), Gaps = 24/268 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+PSV L + F G + +RV R+ S G+A + FN K A ++
Sbjct: 53 LYVGELDPSVSEALLYDIFSPIGPVSSIRVCRDAVTKTSLGYAYVNFNDHDSGKVAIEKL 112
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N I KP I + + P R G +F+KNL +D + L F FG
Sbjct: 113 NYTPIKGKPCRIMWSQRDPSMRKNGSG---------NIFIKNLHADIDNKALHDTFSVFG 163
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ KI DE GKSKGFGF+ F AA +AI +NG M+ +V+ V
Sbjct: 164 NILSCKIATDETGKSKGFGFVHFEEDTAASEAIDAINGMMLNGLEVYVA-------AHVS 216
Query: 216 PKVKPPLLQPARKN--KIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGF 268
K + + A+ N ++V N+ EFEELF +FG ITS S+ D + GF
Sbjct: 217 RKDRESKFEAAKANFTNVYVKNVDLEATEEEFEELFKKFGPITSISMEKDSEGKFRGFGF 276
Query: 269 IEFIMPKHATHAVSTMNGHVFKSKPLKV 296
+ + + A AV +N FKS+ L V
Sbjct: 277 VNYENHESAAKAVDELNDLEFKSQKLYV 304
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 85/309 (27%), Positives = 145/309 (46%), Gaps = 23/309 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK W + D R N N + + NL +DN+AL + F FG +
Sbjct: 118 KGKPCRIMWSQ---RDPSMRKNGSGN-------IFIKNLHADIDNKALHDTFSVFGNILS 167
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
++A ++ +S+GF + F A +A +NG ++ V +V ++ +
Sbjct: 168 CKIATDETGKSKGFGFVHFEEDTAASEAIDAINGMMLNGLEV---YVAAHVSRKDRESKF 224
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
E + V+VKN+ EEE + F KFG I + + +D GK +GFGF+ + ++++
Sbjct: 225 EAAKANFTNVYVKNVDLEATEEEFEELFKKFGPITSISMEKDSEGKFRGFGFVNYENHES 284
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A KA+ E+N + +V A+ + KK + + K + + +FV NL
Sbjct: 285 AAKAVDELNDLEFKSQKLYVGRAQKKYERLQELKKQYEEAKLEKMAKYQGVNLFVKNLDD 344
Query: 239 NINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKP 293
I++ ++ F FGTITS ++ + K GF+ F P+ AT A++ N + KP
Sbjct: 345 TIDDELLKKEFESFGTITSVKVMRNETGKSKGFGFVCFSSPEEATRAITEKNQQIVAGKP 404
Query: 294 LKVTLSGTK 302
L V L+ K
Sbjct: 405 LYVALAQRK 413
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 54/88 (61%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L V NL+ ++D++ L EF+ FGT+ V+V RN+ +S+GF + F++P EA +A
Sbjct: 332 YQGVNLFVKNLDDTIDDELLKKEFESFGTITSVKVMRNETGKSKGFGFVCFSSPEEATRA 391
Query: 92 RVEMNGHLIGSKPVIITFVELKPGQRSK 119
E N ++ KP+ + + K +RS+
Sbjct: 392 ITEKNQQIVAGKPLYVALAQRKDVRRSQ 419
>gi|297834512|ref|XP_002885138.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297330978|gb|EFH61397.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 542
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 79/276 (28%), Positives = 136/276 (49%), Gaps = 17/276 (6%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L+V NL+ S+ + L F FG + +V +N +S+GF + F T A AR ++
Sbjct: 112 LYVKNLDISITSSGLERMFNPFGVILSCKVV-EENGQSKGFGFVQFETEQSAVTARSALH 170
Query: 97 GHLI-GSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
G ++ G K + F+ +R G K + V+VKNL+E + E+ L F ++G
Sbjct: 171 GSMVDGKKLFVAKFIN--KNERVAMAG--NKGF--TNVYVKNLIENITEDILHRLFSQYG 224
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
+ V ++RD G+S+GFGF+ F + A+KA+ ++GR + + FV A ++
Sbjct: 225 TVSSVVVMRDGMGRSRGFGFVNFCHPENAKKAVDSLHGRQVGSKTLFVGKALKRDERREM 284
Query: 216 PKVKPPLLQPARKN----KIFVANLPSNINNSEFEELFARFGTITSSSLV-----SDKHI 266
K K A+ N ++V NL ++N++ E+F R+G I S+ ++ K
Sbjct: 285 LKHKYRDNFIAKSNMRWSNLYVKNLSESMNDTTLREIFGRYGQIVSAKVMRHENGRSKGF 344
Query: 267 GFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ F + + A +NG K L V ++ K
Sbjct: 345 GFVCFSNREESKQAKRYLNGFSVDGKLLVVRVAERK 380
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 75/266 (28%), Positives = 127/266 (47%), Gaps = 22/266 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L P V Q LI+ F + V + RN +S +A I F++P A A +
Sbjct: 23 LYVGDLSPDVTEQDLIHRFSLTVPVLSVHLCRNSVTGKSLCYAYINFDSPFSASNAMARL 82
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N + K + I + + R ++ ++VKNL ++ L+ F FG
Sbjct: 83 NHTDLKGKAMRIMWSQRDLSYR--------RRTGFGNLYVKNLDISITSSGLERMFNPFG 134
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
I+ K+V +ENG+SKGFGF+QF + ++A A ++G M+ FV+ K +
Sbjct: 135 VILSCKVV-EENGQSKGFGFVQFETEQSAVTARSALHGSMVDGKKLFVA-------KFIN 186
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIE 270
+ + ++V NL NI LF+++GT++S ++ D + GF+
Sbjct: 187 KNERVAMAGNKGFTNVYVKNLIENITEDILHRLFSQYGTVSSVVVMRDGMGRSRGFGFVN 246
Query: 271 FIMPKHATHAVSTMNGHVFKSKPLKV 296
F P++A AV +++G SK L V
Sbjct: 247 FCHPENAKKAVDSLHGRQVGSKTLFV 272
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 46/81 (56%)
Query: 33 KENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKAR 92
+ + L+V NL S+++ L F ++G + +V R++N S+GF + F+ E+K+A+
Sbjct: 300 RWSNLYVKNLSESMNDTTLREIFGRYGQIVSAKVMRHENGRSKGFGFVCFSNREESKQAK 359
Query: 93 VEMNGHLIGSKPVIITFVELK 113
+NG + K +++ E K
Sbjct: 360 RYLNGFSVDGKLLVVRVAERK 380
>gi|440913528|gb|ELR62976.1| Polyadenylate-binding protein 4, partial [Bos grunniens mutus]
Length = 196
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 61/168 (36%), Positives = 91/168 (54%), Gaps = 11/168 (6%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L V L +F G + +RV R+ S G+A + F PA+A++A M
Sbjct: 4 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 63
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N +I KP+ I + + P R VG VF+KNL ++D++ L F FG
Sbjct: 64 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------NVFIKNLDNSIDDKALYDTFSAFG 114
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFV 203
NI+ K+V DENG SKG+ F+ F + +AA+KAI +MNG ++ FV
Sbjct: 115 NILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 161
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 78/171 (45%), Gaps = 20/171 (11%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEM 191
++V +L V E L F G ++ +++ RD +S G+ ++ F AE+A+ M
Sbjct: 4 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 63
Query: 192 NGRMIQHNSTFVSLAEIVPGK--KVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELF 249
N +++ GK ++ + P L+ + +F+ NL ++I++ + F
Sbjct: 64 N-------------FDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDNSIDDKALYDTF 110
Query: 250 ARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
+ FG I S +V D K F+ F + A A+ MNG + + + V
Sbjct: 111 SAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 161
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGF--IEFIMPKHATHAVSTM 284
++V +L S++ + E F+ G + S + D + +G+ + F P A A+ TM
Sbjct: 4 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 63
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N V K KP+++ S P +
Sbjct: 64 NFDVIKGKPIRIMWSQRDPSL 84
>gi|441675859|ref|XP_003280927.2| PREDICTED: uncharacterized protein LOC100588478 [Nomascus
leucogenys]
Length = 485
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 61/182 (33%), Positives = 93/182 (51%), Gaps = 11/182 (6%)
Query: 23 RSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIV 81
R E N + L+V +L P V L +F G + +R+ R+K S G+A +
Sbjct: 275 RGGYEGNPDFPMASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVN 334
Query: 82 FNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVET 141
+ P +AK+A +N +I +PV I + + P R VG VF+KNL +T
Sbjct: 335 YQQPVDAKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVG---------NVFIKNLGKT 385
Query: 142 VDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNST 201
+D + L + F FGNI+ K+ DE G KG+GF+ F ++AE+AI MNG + +
Sbjct: 386 IDNKALYNIFSAFGNILSCKVACDEKGP-KGYGFVHFQKQESAERAIDVMNGMFLNYRKI 444
Query: 202 FV 203
FV
Sbjct: 445 FV 446
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 72/159 (45%), Gaps = 16/159 (10%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEM 191
++V +L V E L F G I+ ++I RD+ +S G+ ++ + A++A+ +
Sbjct: 289 LYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETL 348
Query: 192 NGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFAR 251
N +I+ + ++ + P L+ + +F+ NL I+N +F+
Sbjct: 349 NFDVIKGRPVRIMWSQ-----------RDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSA 397
Query: 252 FGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNG 286
FG I S + D K GF+ F + A A+ MNG
Sbjct: 398 FGNILSCKVACDEKGPKGYGFVHFQKQESAERAIDVMNG 436
>gi|273068254|gb|ACZ97550.1| apoptosis-promoting RNA-binding protein [Ornithodoros moubata]
Length = 204
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 101/172 (58%), Gaps = 5/172 (2%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S+DN+A+ + F FG + RVA ++ S+G+ + F T A A ++N
Sbjct: 34 VFIKNLDKSIDNKAMYDTFSAFGNILSCRVATDEEANSKGYGFVHFETEEAANNAISKVN 93
Query: 97 GHLIGSKPVII-TFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
G L+ K V + F+ K +R + +G + +++ V++KN + +D+E+L F K+G
Sbjct: 94 GMLLNGKKVFVGRFIPRK--ERERLLGDKARRFTN--VYIKNFGDELDDEKLVVIFDKYG 149
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
+ K++ DENGK++GFGF+ F + AEKA+ E+NG+ + +V A+
Sbjct: 150 KVTSAKVMVDENGKNRGFGFVSFEDPECAEKAVEELNGKDVGGKPLYVGRAQ 201
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 105/209 (50%), Gaps = 23/209 (11%)
Query: 95 MNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKF 154
MN I +KP+ I + + P R VG VF+KNL +++D + + F F
Sbjct: 5 MNFDPIKNKPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKSIDNKAMYDTFSAF 55
Query: 155 GNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKV 214
GNI+ ++ DE SKG+GF+ F + +AA AI ++NG ++ FV G+ +
Sbjct: 56 GNILSCRVATDEEANSKGYGFVHFETEEAANNAISKVNGMLLNGKKVFV-------GRFI 108
Query: 215 FPKVKPPLL--QPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKH-----IG 267
K + LL + R +++ N +++ + +F ++G +TS+ ++ D++ G
Sbjct: 109 PRKERERLLGDKARRFTNVYIKNFGDELDDEKLVVIFDKYGKVTSAKVMVDENGKNRGFG 168
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
F+ F P+ A AV +NG KPL V
Sbjct: 169 FVSFEDPECAEKAVEELNGKDVGGKPLYV 197
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 45/79 (56%)
Query: 29 NKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEA 88
+K + +++ N +D++ L+ F K+G + +V ++N ++RGF + F P A
Sbjct: 119 DKARRFTNVYIKNFGDELDDEKLVVIFDKYGKVTSAKVMVDENGKNRGFGFVSFEDPECA 178
Query: 89 KKARVEMNGHLIGSKPVII 107
+KA E+NG +G KP+ +
Sbjct: 179 EKAVEELNGKDVGGKPLYV 197
>gi|299473651|emb|CBN78045.1| poly(A) binding protein [Ectocarpus siliculosus]
Length = 688
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 82/295 (27%), Positives = 134/295 (45%), Gaps = 41/295 (13%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ V NL+ +VDN+AL + F FG + +VA + ES+G+ + + A A ++N
Sbjct: 132 IFVKNLDETVDNKALYDTFSLFGNILSCKVATDDAGESKGYGYVHYEGGVSANMAIAKIN 191
Query: 97 GHLIGSKPVIIT-FVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
G LI K V + FV +R G Q ++VK L + D+ +L+ F K G
Sbjct: 192 GMLIAGKQVHVGHFV-----RRDNRAG----QADWTNLYVKGLPSSWDDAKLREEFEKHG 242
Query: 156 NIIEVKI-VRDENGKS--------------KGFGFIQFFSYKAAEKAIIEMNGRMIQHNS 200
+ K+ V + G+ +GFGF+ F +++A KAI +N +
Sbjct: 243 AVTSCKVQVAPQEGQGDESKEKGKGGEGKSRGFGFVNFEEHESAVKAIEALNNAEMPDGE 302
Query: 201 TFVSLAEIVPGKKV---------FPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFAR 251
+L KK +VK + + ++V NL + E FA
Sbjct: 303 GTTTLYCARAQKKSERARELQSKHDQVKMERMNKFQGVNVYVKNLDEGVTEDAMREAFAP 362
Query: 252 FGTITSSSLVSD-------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299
+GTITS+ ++ D K GF+ F P+ AT A++ MNG + +KP+ V L+
Sbjct: 363 YGTITSARVMVDNSNNNQSKGFGFVCFSAPEEATKAITEMNGKMLLNKPIYVALA 417
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/228 (29%), Positives = 106/228 (46%), Gaps = 20/228 (8%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L V L F + G + +RV R+ S G+A + F+ A+A++
Sbjct: 39 YHSASLYVGDLSKDVAEATLFEIFSQVGPVASIRVCRDTVTRRSLGYAYVNFHNVADAER 98
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN I + I + + P R VG +FVKNL ETVD + L
Sbjct: 99 ALDTMNFTTIKDQACRIMWSQRDPSLRRSGVG---------NIFVKNLDETVDNKALYDT 149
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVP 210
F FGNI+ K+ D+ G+SKG+G++ + +A AI ++NG +I V
Sbjct: 150 FSLFGNILSCKVATDDAGESKGYGYVHYEGGVSANMAIAKINGMLIAGKQVHVGH----- 204
Query: 211 GKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSS 258
F + Q N ++V LPS+ ++++ E F + G +TS
Sbjct: 205 ----FVRRDNRAGQADWTN-LYVKGLPSSWDDAKLREEFEKHGAVTSC 247
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 96/200 (48%), Gaps = 30/200 (15%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVA----RNKNDES-----------RGFAIIV 81
L+V L S D+ L EF+K G + +V + DES RGF +
Sbjct: 220 LYVKGLPSSWDDAKLREEFEKHGAVTSCKVQVAPQEGQGDESKEKGKGGEGKSRGFGFVN 279
Query: 82 FNTPAEAKKARVEMNGHLI----GSKPVIITFVELKPGQRSKPVGPEEKQYKKDK----- 132
F A KA +N + G+ + + K +R++ + + Q K ++
Sbjct: 280 FEEHESAVKAIEALNNAEMPDGEGTTTLYCARAQ-KKSERARELQSKHDQVKMERMNKFQ 338
Query: 133 ---VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE--NGKSKGFGFIQFFSYKAAEKA 187
V+VKNL E V E+ ++ F +G I +++ D N +SKGFGF+ F + + A KA
Sbjct: 339 GVNVYVKNLDEGVTEDAMREAFAPYGTITSARVMVDNSNNNQSKGFGFVCFSAPEEATKA 398
Query: 188 IIEMNGRMIQHNSTFVSLAE 207
I EMNG+M+ + +V+LA+
Sbjct: 399 ITEMNGKMLLNKPIYVALAQ 418
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 79/175 (45%), Gaps = 17/175 (9%)
Query: 128 YKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEK 186
Y ++V +L + V E L F + G + +++ RD +S G+ ++ F + AE+
Sbjct: 39 YHSASLYVGDLSKDVAEATLFEIFSQVGPVASIRVCRDTVTRRSLGYAYVNFHNVADAER 98
Query: 187 AIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFE 246
A+ MN I+ + + ++ + P L+ + IFV NL ++N
Sbjct: 99 ALDTMNFTTIKDQACRIMWSQ-----------RDPSLRRSGVGNIFVKNLDETVDNKALY 147
Query: 247 ELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
+ F+ FG I S + +D K G++ + A A++ +NG + K + V
Sbjct: 148 DTFSLFGNILSCKVATDDAGESKGYGYVHYEGGVSANMAIAKINGMLIAGKQVHV 202
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVA--RNKNDESRGFAIIVFNTPAEAKKARVE 94
++V NL+ V A+ F +GT+ RV + N++S+GF + F+ P EA KA E
Sbjct: 342 VYVKNLDEGVTEDAMREAFAPYGTITSARVMVDNSNNNQSKGFGFVCFSAPEEATKAITE 401
Query: 95 MNGHLIGSKPVIITFVELKPGQRSK 119
MNG ++ +KP+ + + + +R++
Sbjct: 402 MNGKMLLNKPIYVALAQRREVRRTQ 426
>gi|296470851|tpg|DAA12966.1| TPA: PABPC1L2B protein-like [Bos taurus]
Length = 489
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 92/178 (51%), Gaps = 11/178 (6%)
Query: 27 ENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTP 85
E N + L+V +L P V L +F G + +R+ R+K S G+A + + P
Sbjct: 283 ERNPNFPMASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQP 342
Query: 86 AEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEE 145
+AK+A +N +I +PV I + + P R VG VF+KNL +T+D +
Sbjct: 343 VDAKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVG---------NVFIKNLGKTIDNK 393
Query: 146 ELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFV 203
L + F FGNI+ K+ DE G KG+GF+ F ++AE+AI MNG + + FV
Sbjct: 394 ALYNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFV 450
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 72/159 (45%), Gaps = 16/159 (10%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEM 191
++V +L V E L F G I+ ++I RD+ +S G+ ++ + A++A+ +
Sbjct: 293 LYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETL 352
Query: 192 NGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFAR 251
N +I+ + ++ + P L+ + +F+ NL I+N +F+
Sbjct: 353 NFDVIKGRPVRIMWSQ-----------RDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSA 401
Query: 252 FGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNG 286
FG I S + D K GF+ F + A A+ MNG
Sbjct: 402 FGNILSCKVACDEKGPKGYGFVHFQKQESAERAIDAMNG 440
>gi|237833723|ref|XP_002366159.1| polyadenylate-binding protein, putative [Toxoplasma gondii ME49]
gi|211963823|gb|EEA99018.1| polyadenylate-binding protein, putative [Toxoplasma gondii ME49]
Length = 768
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 77/298 (25%), Positives = 141/298 (47%), Gaps = 46/298 (15%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
V NL+ ++DN+AL + F FG + +VA + N S+G+ + + A+ A ++NG
Sbjct: 175 VKNLDKNIDNKALYDTFSLFGNILSCKVAVDDNGHSKGYGFVHYENEESARSAIDKVNGM 234
Query: 99 LIGSKPVIIT-FVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETV-DEEELKSHFIKFGN 156
LIG K V + F+ +R++ E +Y V++KN+ DE L+ F KFG+
Sbjct: 235 LIGGKTVYVGPFI-----RRAERDNLAEAKYTN--VYIKNMPSAWEDESRLRETFSKFGS 287
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNST--------------- 201
I + + +D G+ F F F + +A+ A+ +NG+ +
Sbjct: 288 ITSLVVRKDPKGRL--FAFCNFADHDSAKAAVEALNGKRVTDAGAIKEGEDSGAEEKEEE 345
Query: 202 ----------FVSLAEIVPGKKVFPKVKPPLLQPARKNK-----IFVANLPSNINNSEFE 246
FV + + + K + R ++ +++ N+ +I++ +
Sbjct: 346 GQKREGDQILFVGPHQSKAHRSAMLRAKFEQMNQDRNDRFQGVNLYIKNMDDSIDDEKLR 405
Query: 247 ELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299
+LF FG+ITS+ ++ D + GF+ F+ P+ AT AV+ M+ + K KPL V L+
Sbjct: 406 QLFEPFGSITSAKVMRDERGVSRCFGFVCFMSPEEATKAVTEMHLKLVKGKPLYVGLA 463
Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 70/255 (27%), Positives = 118/255 (46%), Gaps = 22/255 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L V L F G + +RV R+ S G+A + + +A+++ +
Sbjct: 85 LYVGDLHQDVTEAMLFEVFNSVGPVTSIRVCRDTVTRRSLGYAYVNYQGIQDAERSLDTL 144
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N +I +P I + P R G +FVKNL + +D + L F FG
Sbjct: 145 NYTVIKGQPCRIMWCHRDPSLRKSGNG---------NIFVKNLDKNIDNKALYDTFSLFG 195
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ D+NG SKG+GF+ + + ++A AI ++NG +I + +V
Sbjct: 196 NILSCKVAVDDNGHSKGYGFVHYENEESARSAIDKVNGMLIGGKTVYVG--------PFI 247
Query: 216 PKVKPPLLQPARKNKIFVANLPSNI-NNSEFEELFARFGTITSSSLVSD---KHIGFIEF 271
+ + L A+ +++ N+PS + S E F++FG+ITS + D + F F
Sbjct: 248 RRAERDNLAEAKYTNVYIKNMPSAWEDESRLRETFSKFGSITSLVVRKDPKGRLFAFCNF 307
Query: 272 IMPKHATHAVSTMNG 286
A AV +NG
Sbjct: 308 ADHDSAKAAVEALNG 322
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 65/253 (25%), Positives = 120/253 (47%), Gaps = 43/253 (16%)
Query: 23 RSNKENNKVYKENELHVNNLEPSVDNQALINE-FKKFGTLRDVRVARNKNDESRGFAIIV 81
R+ ++N K +++ N+ + ++++ + E F KFG++ + V K+ + R FA
Sbjct: 249 RAERDNLAEAKYTNVYIKNMPSAWEDESRLRETFSKFGSITSLVV--RKDPKGRLFAFCN 306
Query: 82 FNTPAEAKKARVEMNGHLIGSKPVI----------------------ITFV--ELKPGQR 117
F AK A +NG + I I FV R
Sbjct: 307 FADHDSAKAAVEALNGKRVTDAGAIKEGEDSGAEEKEEEGQKREGDQILFVGPHQSKAHR 366
Query: 118 SKPVGPEEKQYKKDK--------VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGK 169
S + + +Q +D+ +++KN+ +++D+E+L+ F FG+I K++RDE G
Sbjct: 367 SAMLRAKFEQMNQDRNDRFQGVNLYIKNMDDSIDDEKLRQLFEPFGSITSAKVMRDERGV 426
Query: 170 SKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGK--KVFPKVKPPLLQPAR 227
S+ FGF+ F S + A KA+ EM+ ++++ +V LAE + ++ + + P L+PA
Sbjct: 427 SRCFGFVCFMSPEEATKAVTEMHLKLVKGKPLYVGLAERREQRLMRLQQRFRLPSLRPA- 485
Query: 228 KNKIFVANLPSNI 240
A LP N+
Sbjct: 486 -----AAALPGNV 493
>gi|403221305|dbj|BAM39438.1| polyadenylate-binding protein [Theileria orientalis strain
Shintoku]
Length = 656
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 74/275 (26%), Positives = 134/275 (48%), Gaps = 22/275 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ V NL+ S+D ++L + F FGT+ +VA + SR + + + + A++A ++N
Sbjct: 117 IFVKNLDKSIDTKSLYDTFAHFGTILSCKVAVDSTGASRRYGFVHYESEESAREAIEKVN 176
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G LIG K V E+ P R + E + ++V+N DEE L+ K+G
Sbjct: 177 GMLIGGKKV-----EVAPFLRKQD---RETEEVYTNLYVRNFPADWDEEALRQFLEKYGE 228
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNS--TFVSLAEIVPGKKV 214
I + + D G+ F F+ + A++ + +N ++ S V + ++
Sbjct: 229 ITSMMLKEDSKGRR--FAFVNYKEASVAKEVVTTLNDLKLEEASDPLLVCPHQDKVKRQN 286
Query: 215 FPKVKPPLLQPARKNK-----IFVANLPSNINNSEFEELFARFGTITSSSLVSD-----K 264
K + + P + +K +++ NL +++ ELF +FGTITSS ++ D +
Sbjct: 287 MLKAQFSTVSPGQDDKRLTSNLYIKNLDDTFDDASLGELFKQFGTITSSKVMLDANNNSR 346
Query: 265 HIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299
GF+ F P+ AT A++ M+ + K KPL V L+
Sbjct: 347 GFGFVCFSNPQEATKAIAAMHLKLVKGKPLYVGLA 381
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 78/299 (26%), Positives = 133/299 (44%), Gaps = 35/299 (11%)
Query: 10 ASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARN 69
AS + + +D G +V+ L+V +L+P V L F G + +RV R+
Sbjct: 2 ASTIKTVPNDNGIMMPMREGQVFSSASLYVGDLQPDVTEAVLYEVFNTIGPVASIRVCRD 61
Query: 70 K-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQY 128
+S G+A + + + +A+ A +N I P I + P R G
Sbjct: 62 SVTRKSLGYAYVNYYSTQDAEAALENLNYIEIKGHPTRIMWSNRDPSLRKSGAG------ 115
Query: 129 KKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAI 188
+FVKNL +++D + L F FG I+ K+ D G S+ +GF+ + S ++A +AI
Sbjct: 116 ---NIFVKNLDKSIDTKSLYDTFAHFGTILSCKVAVDSTGASRRYGFVHYESEESAREAI 172
Query: 189 IEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNK-----IFVANLPSNINNS 243
++NG +I GKKV +V P L + R+ + ++V N P++ +
Sbjct: 173 EKVNGMLIG-------------GKKV--EVAPFLRKQDRETEEVYTNLYVRNFPADWDEE 217
Query: 244 EFEELFARFGTITSSSLVSD---KHIGFIEFIMPKHATHAVSTMNGHVFK--SKPLKVT 297
+ ++G ITS L D + F+ + A V+T+N + S PL V
Sbjct: 218 ALRQFLEKYGEITSMMLKEDSKGRRFAFVNYKEASVAKEVVTTLNDLKLEEASDPLLVC 276
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 95/202 (47%), Gaps = 29/202 (14%)
Query: 23 RSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVF 82
+ ++E +VY L+V N D +AL +K+G + + + ++ + R FA + +
Sbjct: 193 KQDRETEEVY--TNLYVRNFPADWDEEALRQFLEKYGEITSMML--KEDSKGRRFAFVNY 248
Query: 83 NTPAEAKKARVEMNGHLI--GSKPVIIT---------------FVELKPGQRSKPVGPEE 125
+ AK+ +N + S P+++ F + PGQ K +
Sbjct: 249 KEASVAKEVVTTLNDLKLEEASDPLLVCPHQDKVKRQNMLKAQFSTVSPGQDDKRL---- 304
Query: 126 KQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAE 185
+++KNL +T D+ L F +FG I K++ D N S+GFGF+ F + + A
Sbjct: 305 ----TSNLYIKNLDDTFDDASLGELFKQFGTITSSKVMLDANNNSRGFGFVCFSNPQEAT 360
Query: 186 KAIIEMNGRMIQHNSTFVSLAE 207
KAI M+ ++++ +V LAE
Sbjct: 361 KAIAAMHLKLVKGKPLYVGLAE 382
>gi|397575959|gb|EJK49989.1| hypothetical protein THAOC_31088, partial [Thalassiosira oceanica]
Length = 690
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 69/229 (30%), Positives = 112/229 (48%), Gaps = 27/229 (11%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L P V+ L F G + +RV R+ S G+A + ++ A+A++A M
Sbjct: 15 LYVGDLLPEVNEGLLYEIFNAVGPVASIRVCRDAVTRRSLGYAYVNYHQAADAERALDSM 74
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N I KP I + + P R VG +FVKNL E +D ++L F FG
Sbjct: 75 NFTDIKGKPCRIMWSQRDPSVRRSGVG---------NIFVKNLHEGIDNKQLYDTFSLFG 125
Query: 156 NIIEVKIVRD-ENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL---AEIVPG 211
NI+ K+V D E G SKG+G++ + + +AA AI +++G +I V + + P
Sbjct: 126 NILSCKVVCDRETGLSKGYGYVHYETNEAAASAIDKLDGMLIDGKEVQVGVFMRRDTRPD 185
Query: 212 KKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSL 260
++V+ +F+ N+P ++ E FA FG I S+S+
Sbjct: 186 QEVY-------------TNLFIKNMPYEWDDKRLEAEFAEFGEIVSASV 221
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 77/334 (23%), Positives = 141/334 (42%), Gaps = 79/334 (23%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDE-SRGFAIIVFNTPAEAKKARVEM 95
+ V NL +DN+ L + F FG + +V ++ S+G+ + + T A A ++
Sbjct: 103 IFVKNLHEGIDNKQLYDTFSLFGNILSCKVVCDRETGLSKGYGYVHYETNEAAASAIDKL 162
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
+G LI K V + V ++ R P+++ Y +F+KN+ D++ L++ F +FG
Sbjct: 163 DGMLIDGKEVQVG-VFMRRDTR-----PDQEVYTN--LFIKNMPYEWDDKRLEAEFAEFG 214
Query: 156 NIIEVKI-----------------VRDENGK----------------------------- 169
I+ + +DE+ K
Sbjct: 215 EIVSASVKMGKRKKFAKKGKKAEAKKDEDDKEDGAEDKPAEEEKPEEEEAKPAEEEAKPE 274
Query: 170 -----SKGFGFIQFFSYKAAEKAIIEMNGRMIQ--------HNSTFVSLAEIVPGKKVFP 216
S GFGF+ F +++AA A+ MN ++ + + FV A+ ++
Sbjct: 275 STEPESLGFGFVNFATHEAAAAAVEAMNDKVYKVTEDGDEVEKALFVGRAQKKSERQAEL 334
Query: 217 KVKPPLLQPARKNK-----IFVANLPSNINNSEFEELFARFGTITSSSLVSD------KH 265
+ K + R K ++V NL + + + F GTITS+ ++ D +
Sbjct: 335 RSKYEAEKMERIAKFQGVNLYVKNLDDAVTDDMLRDEFGGMGTITSAKIMRDAKTNNSRG 394
Query: 266 IGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299
GF+ F P+ AT AV+ M+G + KP+ V+L+
Sbjct: 395 FGFVCFSTPEDATRAVNEMSGKIVAGKPIYVSLA 428
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 52/84 (61%), Gaps = 1/84 (1%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKKARVEM 95
L+V NL+ +V + L +EF GT+ ++ R+ K + SRGF + F+TP +A +A EM
Sbjct: 354 LYVKNLDDAVTDDMLRDEFGGMGTITSAKIMRDAKTNNSRGFGFVCFSTPEDATRAVNEM 413
Query: 96 NGHLIGSKPVIITFVELKPGQRSK 119
+G ++ KP+ ++ + + +R++
Sbjct: 414 SGKIVAGKPIYVSLAQRREVRRAQ 437
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRD-ENGKSKGFGFIQFFSYKAAEKAIIEM 191
++VKNL + V ++ L+ F G I KI+RD + S+GFGF+ F + + A +A+ EM
Sbjct: 354 LYVKNLDDAVTDDMLRDEFGGMGTITSAKIMRDAKTNNSRGFGFVCFSTPEDATRAVNEM 413
Query: 192 NGRMIQHNSTFVSLAE 207
+G+++ +VSLA+
Sbjct: 414 SGKIVAGKPIYVSLAQ 429
>gi|344281910|ref|XP_003412719.1| PREDICTED: hypothetical protein LOC100664266 [Loxodonta africana]
Length = 708
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 58/169 (34%), Positives = 89/169 (52%), Gaps = 11/169 (6%)
Query: 36 ELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVE 94
L+V +L P V L +F G + +R+ R+K S G+A + + P +AK+A
Sbjct: 352 SLYVGDLHPEVTEAMLYEKFSPAGRILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 411
Query: 95 MNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKF 154
+N +I +PV I + + P R VG VF+KNL +T+D + L + F F
Sbjct: 412 LNFDVIKGRPVRIMWSQRDPSLRKSGVG---------NVFIKNLGKTIDNKALYNIFSTF 462
Query: 155 GNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFV 203
GNI+ K+ DE G KG+GF+ F ++AE+AI MNG + + FV
Sbjct: 463 GNILSCKVACDEKGP-KGYGFVHFQEQESAERAIDVMNGMFLNYRKIFV 510
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 72/159 (45%), Gaps = 16/159 (10%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEM 191
++V +L V E L F G I+ ++I RD+ +S G+ ++ + A++A+ +
Sbjct: 353 LYVGDLHPEVTEAMLYEKFSPAGRILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETL 412
Query: 192 NGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFAR 251
N +I+ + ++ + P L+ + +F+ NL I+N +F+
Sbjct: 413 NFDVIKGRPVRIMWSQ-----------RDPSLRKSGVGNVFIKNLGKTIDNKALYNIFST 461
Query: 252 FGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNG 286
FG I S + D K GF+ F + A A+ MNG
Sbjct: 462 FGNILSCKVACDEKGPKGYGFVHFQEQESAERAIDVMNG 500
>gi|401409876|ref|XP_003884386.1| hypothetical protein NCLIV_047860 [Neospora caninum Liverpool]
gi|325118804|emb|CBZ54355.1| hypothetical protein NCLIV_047860 [Neospora caninum Liverpool]
Length = 763
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 76/298 (25%), Positives = 142/298 (47%), Gaps = 46/298 (15%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
V NL+ ++DN+AL + F FG + +VA ++N S+G+ + + A+ A ++NG
Sbjct: 176 VKNLDKNIDNKALYDTFSLFGNILSCKVAVDENGHSKGYGFVHYENEESARSAIDKVNGM 235
Query: 99 LIGSKPVIIT-FVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETV-DEEELKSHFIKFGN 156
LIG K V + F+ +R++ E +Y V++KN+ DE L+ F K+G+
Sbjct: 236 LIGGKTVYVGPFI-----RRAERDNLAETKYTN--VYIKNMPSAWEDEARLRETFAKYGS 288
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNST--------------- 201
I + + +D G+ F F F + +A+ A+ +NG+ +
Sbjct: 289 ITSLVVRKDPKGRL--FAFCNFADHDSAKAAVEALNGKRVTDAGAIKEGEDSGAEEKDEE 346
Query: 202 ----------FVSLAEIVPGKKVFPKVKPPLLQPARKNK-----IFVANLPSNINNSEFE 246
FV + + + K + R ++ +++ N+ +I++ +
Sbjct: 347 GQKREGEQILFVGPHQSKAHRSAMLRAKFEQMNQDRNDRFQGVNLYIKNMDDSIDDEKLR 406
Query: 247 ELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299
+LF FG+ITS+ ++ D + GF+ F+ P+ AT AV+ M+ + K KPL V L+
Sbjct: 407 QLFEPFGSITSAKVMRDERGVSRCFGFVCFMSPEEATKAVTEMHLKLVKGKPLYVGLA 464
Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 75/281 (26%), Positives = 124/281 (44%), Gaps = 26/281 (9%)
Query: 15 GISDDEGARSNKENNKVYKEN----ELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK 70
G + G R N N N L+V +L V L F G + +RV R+
Sbjct: 60 GTAPPAGQRPNGLNAAASAANFVSPSLYVGDLHQDVTEAMLFEVFNSVGPVTSIRVCRDT 119
Query: 71 -NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYK 129
S G+A + + +A+++ +N +I +P I + P R G
Sbjct: 120 VTRRSLGYAYVNYQGIQDAERSLDTLNYTVIKGQPCRIMWCHRDPSLRKSGNG------- 172
Query: 130 KDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAII 189
+FVKNL + +D + L F FGNI+ K+ DENG SKG+GF+ + + ++A AI
Sbjct: 173 --NIFVKNLDKNIDNKALYDTFSLFGNILSCKVAVDENGHSKGYGFVHYENEESARSAID 230
Query: 190 EMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNI-NNSEFEEL 248
++NG +I + +V + + L + +++ N+PS + + E
Sbjct: 231 KVNGMLIGGKTVYVG--------PFIRRAERDNLAETKYTNVYIKNMPSAWEDEARLRET 282
Query: 249 FARFGTITSSSLVSD---KHIGFIEFIMPKHATHAVSTMNG 286
FA++G+ITS + D + F F A AV +NG
Sbjct: 283 FAKYGSITSLVVRKDPKGRLFAFCNFADHDSAKAAVEALNG 323
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 65/253 (25%), Positives = 120/253 (47%), Gaps = 44/253 (17%)
Query: 23 RSNKENNKVYKENELHVNNLEPSVDNQALINE-FKKFGTLRDVRVARNKNDESRGFAIIV 81
R+ ++N K +++ N+ + +++A + E F K+G++ + V K+ + R FA
Sbjct: 250 RAERDNLAETKYTNVYIKNMPSAWEDEARLRETFAKYGSITSLVV--RKDPKGRLFAFCN 307
Query: 82 FNTPAEAKKARVEMNGHLIGSKPVI----------------------ITFV--ELKPGQR 117
F AK A +NG + I I FV R
Sbjct: 308 FADHDSAKAAVEALNGKRVTDAGAIKEGEDSGAEEKDEEGQKREGEQILFVGPHQSKAHR 367
Query: 118 SKPVGPEEKQYKKDK--------VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGK 169
S + + +Q +D+ +++KN+ +++D+E+L+ F FG+I K++RDE G
Sbjct: 368 SAMLRAKFEQMNQDRNDRFQGVNLYIKNMDDSIDDEKLRQLFEPFGSITSAKVMRDERGV 427
Query: 170 SKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGK--KVFPKVKPPLLQPAR 227
S+ FGF+ F S + A KA+ EM+ ++++ +V LAE + ++ + + P L+PA
Sbjct: 428 SRCFGFVCFMSPEEATKAVTEMHLKLVKGKPLYVGLAERREQRLMRLQQRFRLPSLRPA- 486
Query: 228 KNKIFVANLPSNI 240
A LP N+
Sbjct: 487 ------AALPGNV 493
>gi|397508069|ref|XP_003824497.1| PREDICTED: polyadenylate-binding protein 1-like 2-like, partial
[Pan paniscus]
Length = 293
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 94/180 (52%), Gaps = 11/180 (6%)
Query: 25 NKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFN 83
+ E N ++ L+V +L P V L +F G + +R+ R+K S G+A + +
Sbjct: 85 DCEGNPDFQMASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQ 144
Query: 84 TPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVD 143
P +AK+A +N +I +PV I + + P R VG VF+KNL +T+D
Sbjct: 145 QPVDAKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVG---------NVFIKNLGKTID 195
Query: 144 EEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFV 203
+ L + F FGNI+ K+ DE G KG+GF+ F ++AE+AI MNG + + FV
Sbjct: 196 NKALYNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFV 254
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 74/164 (45%), Gaps = 16/164 (9%)
Query: 128 YKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEK 186
++ ++V +L V E L F G I+ ++I RD+ +S G+ ++ + A++
Sbjct: 92 FQMASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKR 151
Query: 187 AIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFE 246
A+ +N +I+ + ++ + P L+ + +F+ NL I+N
Sbjct: 152 ALETLNFDVIKGRPVRIMWSQ-----------RDPSLRKSGVGNVFIKNLGKTIDNKALY 200
Query: 247 ELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNG 286
+F+ FG I S + D K GF+ F + A A+ MNG
Sbjct: 201 NIFSAFGNILSCKVACDEKGPKGYGFVHFQKQESAERAIDVMNG 244
>gi|344281908|ref|XP_003412718.1| PREDICTED: hypothetical protein LOC100663984 [Loxodonta africana]
Length = 640
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 89/168 (52%), Gaps = 11/168 (6%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L P V L +F G + +R+ R+K S G+A + + P +AK+A +
Sbjct: 444 LYVGDLHPEVTEAMLYEKFSPAGRILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETL 503
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N +I +PV I + + P R VG VF+KNL +T+D + L + F FG
Sbjct: 504 NFDVIKGRPVRIMWSQRDPSLRKSGVG---------NVFIKNLGKTIDNKALYNIFSTFG 554
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFV 203
NI+ K+ DE G KG+GF+ F ++AE+AI MNG + + FV
Sbjct: 555 NILSCKVACDEKGP-KGYGFVHFQEQESAERAIDVMNGMFLNYRKIFV 601
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 72/159 (45%), Gaps = 16/159 (10%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEM 191
++V +L V E L F G I+ ++I RD+ +S G+ ++ + A++A+ +
Sbjct: 444 LYVGDLHPEVTEAMLYEKFSPAGRILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETL 503
Query: 192 NGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFAR 251
N +I+ + ++ + P L+ + +F+ NL I+N +F+
Sbjct: 504 NFDVIKGRPVRIMWSQ-----------RDPSLRKSGVGNVFIKNLGKTIDNKALYNIFST 552
Query: 252 FGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNG 286
FG I S + D K GF+ F + A A+ MNG
Sbjct: 553 FGNILSCKVACDEKGPKGYGFVHFQEQESAERAIDVMNG 591
>gi|297304162|ref|XP_002806331.1| PREDICTED: polyadenylate-binding protein 1-like 2-like, partial
[Macaca mulatta]
Length = 249
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 61/182 (33%), Positives = 93/182 (51%), Gaps = 11/182 (6%)
Query: 23 RSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIV 81
R E N + L+V +L P V L +F G + +R+ R+K S G+A +
Sbjct: 39 RGGCEGNPDFPMASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVN 98
Query: 82 FNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVET 141
+ P +AK+A +N +I +PV I + + P R VG VF+KNL +T
Sbjct: 99 YQQPVDAKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVG---------NVFIKNLGKT 149
Query: 142 VDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNST 201
+D + L + F FGNI+ K+ DE G KG+GF+ F ++AE+AI MNG + +
Sbjct: 150 IDNKALYNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKI 208
Query: 202 FV 203
FV
Sbjct: 209 FV 210
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 72/159 (45%), Gaps = 16/159 (10%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEM 191
++V +L V E L F G I+ ++I RD+ +S G+ ++ + A++A+ +
Sbjct: 53 LYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETL 112
Query: 192 NGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFAR 251
N +I+ + ++ + P L+ + +F+ NL I+N +F+
Sbjct: 113 NFDVIKGRPVRIMWSQ-----------RDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSA 161
Query: 252 FGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNG 286
FG I S + D K GF+ F + A A+ MNG
Sbjct: 162 FGNILSCKVACDEKGPKGYGFVHFQKQESAERAIDVMNG 200
>gi|402697291|gb|AFQ90833.1| polyA-binding protein cytoplasmic 1, partial [Malaclemys terrapin]
Length = 175
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 97/167 (58%), Gaps = 4/167 (2%)
Query: 41 NLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLI 100
NL+ S+DN+AL + F FG + +V ++N S+G+ + F T A++A +MNG L+
Sbjct: 2 NLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLL 60
Query: 101 GSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEV 160
+ V + + + +R +G K++ V++KN E +D+E LK F + V
Sbjct: 61 NDRKVFVGRFKSRK-EREAELGARAKEFTN--VYIKNFGEDMDDERLKELFGXXXPALSV 117
Query: 161 KIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
K++ DE+GKSKGFGF+ F ++ A+KA+ EMNG+ + +V A+
Sbjct: 118 KVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQ 164
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 84/168 (50%), Gaps = 15/168 (8%)
Query: 136 KNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRM 195
KNL +++D + L F FGNI+ K+V DENG SKG+GF+ F + +AAE+AI +MNG +
Sbjct: 1 KNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGML 59
Query: 196 IQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARK--NKIFVANLPSNINNSEFEELFARFG 253
+ FV G+ K + L K +++ N ++++ +ELF
Sbjct: 60 LNDRKVFV-------GRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGXXX 112
Query: 254 TITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
S +++D K GF+ F + A AV MNG K + V
Sbjct: 113 PALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 160
>gi|384495100|gb|EIE85591.1| hypothetical protein RO3G_10301 [Rhizopus delemar RA 99-880]
Length = 359
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 80/273 (29%), Positives = 131/273 (47%), Gaps = 33/273 (12%)
Query: 30 KVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEA 88
K+ + L+V L P +D +A++ E FG ++ V+V R+ ++S G+A I F TP +
Sbjct: 34 KITTQTSLYVGELAPHID-EAMLKE--HFGNVKSVQVCRDSVTNQSLGYAHINFYTPQDC 90
Query: 89 KKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELK 148
A +N I + E + +R G + +KNL VD + L
Sbjct: 91 SAAFENLNHSKIDGTTYRLMISERETTKRVSGAG---------NIILKNLHPNVDNKSLY 141
Query: 149 SHFIKFGNIIEVKIVRDENGKS-KGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
F ++GN+I ++ G S KG+GF+ + +Y AAE+AI +NG+M+ E
Sbjct: 142 DTFSRWGNVISCRVFNKLTGGSVKGYGFVNYDTYAAAERAISFVNGKMLFGK-------E 194
Query: 208 IVPGKKVFPKVKPPLL-----QPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLV- 261
+ +V K LL Q R ++V NL S++ + ELF+ G + SS LV
Sbjct: 195 VHASHQVLKNEKESLLSHNDQQHCRFTNVYVKNLSSDVTEDDLGELFSTIGPV-SSVLVQ 253
Query: 262 -SDKH----IGFIEFIMPKHATHAVSTMNGHVF 289
D+H GF+ F +P+ A AV+ ++ F
Sbjct: 254 RDDQHKPKGFGFVNFELPEDAERAVNELHDKDF 286
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 77/266 (28%), Positives = 123/266 (46%), Gaps = 46/266 (17%)
Query: 41 NLEPSVDNQALINEFKKFGTLRDVRVARNKNDES-RGFAIIVFNTPAEAKKARVEMNGHL 99
NL P+VDN++L + F ++G + RV S +G+ + ++T A A++A +NG +
Sbjct: 130 NLHPNVDNKSLYDTFSRWGNVISCRVFNKLTGGSVKGYGFVNYDTYAAAERAISFVNGKM 189
Query: 100 IGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIE 159
+ K V + LK + S +++ + V+VKNL V E++L F G +
Sbjct: 190 LFGKEVHASHQVLKNEKESLLSHNDQQHCRFTNVYVKNLSSDVTEDDLGELFSTIGPVSS 249
Query: 160 VKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVK 219
V + RD+ K KGFGF+ F + AE+A+ E+ H+ F AE V
Sbjct: 250 VLVQRDDQHKPKGFGFVNFELPEDAERAVNEL------HDKDF--FAEDV---------- 291
Query: 220 PPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIM 273
++I + N F +GTITS+ ++ D K GF+ F
Sbjct: 292 --------TDEILINN-------------FLPYGTITSAKIMKDESTGAPKGFGFVCFSS 330
Query: 274 PKHATHAVSTMNGHVFKSKPLKVTLS 299
A AV+ MNG SKP+ V L+
Sbjct: 331 SDEANRAVAEMNGRFISSKPIYVALA 356
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 2/80 (2%)
Query: 35 NELHVNNL-EPSVDNQALINEFKKFGTLRDVRVARNKNDES-RGFAIIVFNTPAEAKKAR 92
NELH + V ++ LIN F +GT+ ++ ++++ + +GF + F++ EA +A
Sbjct: 279 NELHDKDFFAEDVTDEILINNFLPYGTITSAKIMKDESTGAPKGFGFVCFSSSDEANRAV 338
Query: 93 VEMNGHLIGSKPVIITFVEL 112
EMNG I SKP+ + +L
Sbjct: 339 AEMNGRFISSKPIYVALAQL 358
>gi|444720785|gb|ELW61557.1| Polyadenylate-binding protein 1 [Tupaia chinensis]
Length = 232
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 99/171 (57%), Gaps = 4/171 (2%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL S+DN+AL + F FG + +V ++N S+G+ + F T ++A +M+
Sbjct: 56 IFIKNLGKSIDNKALYDTFPAFGNILSCKVVCDENG-SKGYGFVHFETQEAVERAIEKMS 114
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G L+ V + + + +R +G K++ V++KN E +D+E LK F KFG
Sbjct: 115 GMLLNDFKVFVGQFKSRK-EREAELGARAKEFTN--VYIKNFGEDMDDEHLKDLFGKFGP 171
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
+ VK++ DE+GKSKGFGF+ F ++ A+KA+ EMNG+ + ++ A+
Sbjct: 172 ALRVKVMTDESGKSKGFGFVSFERHEDAQKAVNEMNGKELNGKQIYIGRAQ 222
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 66/230 (28%), Positives = 111/230 (48%), Gaps = 24/230 (10%)
Query: 74 SRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKV 133
S G+ + F P + ++A MN +I KPV I + + P V +
Sbjct: 6 SLGYTYVDFQKPTDMERALDTMNFDVIKGKPVRIMWSQHDPSLHKSEVS---------NI 56
Query: 134 FVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNG 193
F+KNL +++D + L F FGNI+ K+V DENG SKG+GF+ F + +A E+AI +M+G
Sbjct: 57 FIKNLGKSIDNKALYDTFPAFGNILSCKVVCDENG-SKGYGFVHFETQEAVERAIEKMSG 115
Query: 194 RMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARK--NKIFVANLPSNINNSEFEELFAR 251
++ FV G+ K + L K +++ N ++++ ++LF +
Sbjct: 116 MLLNDFKVFV-------GQFKSRKEREAELGARAKEFTNVYIKNFGEDMDDEHLKDLFGK 168
Query: 252 FGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
FG +++D K GF+ F + A AV+ MNG K + +
Sbjct: 169 FGPALRVKVMTDESGKSKGFGFVSFERHEDAQKAVNEMNGKELNGKQIYI 218
Score = 45.4 bits (106), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 52/101 (51%), Gaps = 7/101 (6%)
Query: 21 GARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAII 80
GAR+ KE VY + N +D++ L + F KFG V+V +++ +S+GF +
Sbjct: 139 GARA-KEFTNVY------IKNFGEDMDDEHLKDLFGKFGPALRVKVMTDESGKSKGFGFV 191
Query: 81 VFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPV 121
F +A+KA EMNG + K + I + K Q++ +
Sbjct: 192 SFERHEDAQKAVNEMNGKELNGKQIYIGRAQKKVEQQTAQI 232
>gi|309271474|ref|XP_003085306.1| PREDICTED: polyadenylate-binding protein 1-like 2-like [Mus
musculus]
Length = 229
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 92/178 (51%), Gaps = 11/178 (6%)
Query: 27 ENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTP 85
+ N + L+V +L P V L +F G + +R+ R+K S G+A + + P
Sbjct: 23 DGNPDFPTASLYVGDLHPEVTESMLYEKFSPAGPILSIRICRDKVTRRSLGYAYVNYQQP 82
Query: 86 AEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEE 145
+AK+A MN +I +PV I + + P R VG VF+KNL +T+D +
Sbjct: 83 VDAKRALETMNFDVINGRPVRIMWSQRDPSLRKSGVG---------NVFIKNLGKTIDNK 133
Query: 146 ELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFV 203
L + F FGNI+ K+ DE G KG+GF+ F ++AE+AI +NG + + FV
Sbjct: 134 ALYNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDALNGMFLNYRKIFV 190
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 71/159 (44%), Gaps = 16/159 (10%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEM 191
++V +L V E L F G I+ ++I RD+ +S G+ ++ + A++A+ M
Sbjct: 33 LYVGDLHPEVTESMLYEKFSPAGPILSIRICRDKVTRRSLGYAYVNYQQPVDAKRALETM 92
Query: 192 NGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFAR 251
N +I + ++ + P L+ + +F+ NL I+N +F+
Sbjct: 93 NFDVINGRPVRIMWSQ-----------RDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSA 141
Query: 252 FGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNG 286
FG I S + D K GF+ F + A A+ +NG
Sbjct: 142 FGNILSCKVACDEKGPKGYGFVHFQKQESAERAIDALNG 180
>gi|194228035|ref|XP_001914759.1| PREDICTED: polyadenylate-binding protein 1-like 2-like [Equus
caballus]
Length = 200
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 90/168 (53%), Gaps = 11/168 (6%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L P V L +F+ G + +R+ R+K S G+A + + P +AK+A +
Sbjct: 4 LYVGDLHPEVTEAMLYEKFRPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETL 63
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N +I +PV I + + P R VG VF+KNL +T+D + L + F FG
Sbjct: 64 NFDVIKGRPVRIMWSQRDPSLRKSGVG---------NVFIKNLGKTIDNKALYNIFSAFG 114
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFV 203
NI+ K+ DE G KG+GF+ F ++AE+AI MNG + + FV
Sbjct: 115 NILSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFV 161
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 72/159 (45%), Gaps = 16/159 (10%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEM 191
++V +L V E L F G I+ ++I RD+ +S G+ ++ + A++A+ +
Sbjct: 4 LYVGDLHPEVTEAMLYEKFRPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETL 63
Query: 192 NGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFAR 251
N +I+ + ++ + P L+ + +F+ NL I+N +F+
Sbjct: 64 NFDVIKGRPVRIMWSQ-----------RDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSA 112
Query: 252 FGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNG 286
FG I S + D K GF+ F + A A+ MNG
Sbjct: 113 FGNILSCKVACDEKGPKGYGFVHFQKQESAERAIDAMNG 151
>gi|70947056|ref|XP_743180.1| polyadenylate-binding protein [Plasmodium chabaudi chabaudi]
gi|56522555|emb|CAH74716.1| polyadenylate-binding protein, putative [Plasmodium chabaudi
chabaudi]
Length = 629
Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 70/254 (27%), Positives = 119/254 (46%), Gaps = 22/254 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L V L F G + +RV R+ +S G+A + ++ A+A++A +
Sbjct: 18 LYVGDLSEDVTEAVLYEIFNTVGHVLSIRVCRDSVTRKSLGYAYVNYHNLADAERALDTL 77
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N I +P + + P R G +FVKNL +T+D + L F FG
Sbjct: 78 NYTNIKGQPARLMWSHRDPSLRKSGTG---------NIFVKNLDKTIDNKALFDTFSMFG 128
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ DE GKSK +GF+ + ++A++AI ++NG + + +V F
Sbjct: 129 NILSCKVATDEFGKSKNYGFVHYEDEESAKEAIEKVNGMQLGSKNVYVGH---------F 179
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD---KHIGFIEFI 272
K + ++V N P + + +ELF+ +G ITS + SD + FI +
Sbjct: 180 IKKSERATNDTKFTNLYVKNFPDTVTEAHLKELFSPYGEITSMIVKSDNKNRKFCFINYS 239
Query: 273 MPKHATHAVSTMNG 286
A +A+ +NG
Sbjct: 240 DADSARNAMENLNG 253
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 51/75 (68%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMN 192
+++KNL +++D++ LK F +G I K+++D+ +SKGFGF+ F +++ A KA+ EM+
Sbjct: 402 LYIKNLDDSMDDQTLKELFEPYGTITSAKVMKDDKDQSKGFGFVCFGTHEEANKAVTEMH 461
Query: 193 GRMIQHNSTFVSLAE 207
++I +V LAE
Sbjct: 462 LKIINGKPLYVGLAE 476
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 79/170 (46%), Gaps = 17/170 (10%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEM 191
++V +L E V E L F G+++ +++ RD KS G+ ++ + + AE+A+ +
Sbjct: 18 LYVGDLSEDVTEAVLYEIFNTVGHVLSIRVCRDSVTRKSLGYAYVNYHNLADAERALDTL 77
Query: 192 NGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFAR 251
N I+ P + ++ P L + N IFV NL I+N + F+
Sbjct: 78 NYTNIKGQ----------PARLMWSHRDPSLRKSGTGN-IFVKNLDKTIDNKALFDTFSM 126
Query: 252 FGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
FG I S + +D K+ GF+ + + A A+ +NG SK + V
Sbjct: 127 FGNILSCKVATDEFGKSKNYGFVHYEDEESAKEAIEKVNGMQLGSKNVYV 176
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 49/83 (59%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L++ NL+ S+D+Q L F+ +GT+ +V ++ D+S+GF + F T EA KA EM+
Sbjct: 402 LYIKNLDDSMDDQTLKELFEPYGTITSAKVMKDDKDQSKGFGFVCFGTHEEANKAVTEMH 461
Query: 97 GHLIGSKPVIITFVELKPGQRSK 119
+I KP+ + E + + S+
Sbjct: 462 LKIINGKPLYVGLAEKREQRLSR 484
Score = 44.7 bits (104), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 10/98 (10%)
Query: 212 KKVFPKVKPPLLQPARKNK-----IFVANLPSNINNSEFEELFARFGTITSSSLVSD--- 263
+ K K L +NK +++ NL ++++ +ELF +GTITS+ ++ D
Sbjct: 378 RHALLKAKFDTLNTESRNKHPGVNLYIKNLDDSMDDQTLKELFEPYGTITSAKVMKDDKD 437
Query: 264 --KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299
K GF+ F + A AV+ M+ + KPL V L+
Sbjct: 438 QSKGFGFVCFGTHEEANKAVTEMHLKIINGKPLYVGLA 475
>gi|348570494|ref|XP_003471032.1| PREDICTED: polyadenylate-binding protein 1-like 2-like [Cavia
porcellus]
Length = 200
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 89/168 (52%), Gaps = 11/168 (6%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L P V L +F G + +R+ R+K S G+A + + P +AK+A +
Sbjct: 4 LYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETL 63
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N +I +PV I + + P R VG VF+KNL +T+D + L + F FG
Sbjct: 64 NFDVIKGRPVRIMWSQRDPSLRKSGVG---------NVFIKNLGKTIDNKALYNIFSAFG 114
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFV 203
NI+ K+ DE G KG+GF+ F ++AE+AI MNG + + FV
Sbjct: 115 NILSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFV 161
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 73/161 (45%), Gaps = 20/161 (12%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEM 191
++V +L V E L F G I+ ++I RD+ +S G+ ++ + A++A+ +
Sbjct: 4 LYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETL 63
Query: 192 NGRMIQHNSTFVSLAEIVPGK--KVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELF 249
N +++ G+ ++ + P L+ + +F+ NL I+N +F
Sbjct: 64 N-------------FDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIF 110
Query: 250 ARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNG 286
+ FG I S + D K GF+ F + A A+ MNG
Sbjct: 111 SAFGNILSCKVACDEKGPKGYGFVHFQKQESAERAIDAMNG 151
>gi|351699464|gb|EHB02383.1| Polyadenylate-binding protein 1-like 2 [Heterocephalus glaber]
Length = 200
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 89/168 (52%), Gaps = 11/168 (6%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L P V L +F G + +R+ R+K S G+A + + P +AK+A +
Sbjct: 4 LYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETL 63
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N +I +PV I + + P R VG VF+KNL +T+D + L + F FG
Sbjct: 64 NFDVIKGRPVRIMWSQRDPSLRKSGVG---------NVFIKNLGKTIDNKALYNIFSTFG 114
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFV 203
NI+ K+ DE G KG+GF+ F ++AE+AI MNG + + FV
Sbjct: 115 NILSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFV 161
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 72/159 (45%), Gaps = 16/159 (10%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEM 191
++V +L V E L F G I+ ++I RD+ +S G+ ++ + A++A+ +
Sbjct: 4 LYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETL 63
Query: 192 NGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFAR 251
N +I+ + ++ + P L+ + +F+ NL I+N +F+
Sbjct: 64 NFDVIKGRPVRIMWSQ-----------RDPSLRKSGVGNVFIKNLGKTIDNKALYNIFST 112
Query: 252 FGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNG 286
FG I S + D K GF+ F + A A+ MNG
Sbjct: 113 FGNILSCKVACDEKGPKGYGFVHFQKQESAERAIDAMNG 151
>gi|395863403|ref|XP_003803885.1| PREDICTED: polyadenylate-binding protein 1-like 2-like, partial
[Otolemur garnettii]
Length = 203
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 89/168 (52%), Gaps = 11/168 (6%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L P V L +F G + +R+ R+K S G+A + + P +AK+A +
Sbjct: 7 LYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETL 66
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N +I +PV I + + P R VG VF+KNL +T+D + L + F FG
Sbjct: 67 NFDVIKGRPVRIMWSQRDPSLRKSGVG---------NVFIKNLGKTIDNKALYNIFSAFG 117
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFV 203
NI+ K+ DE G KG+GF+ F ++AE+AI MNG + + FV
Sbjct: 118 NILSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFV 164
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 72/159 (45%), Gaps = 16/159 (10%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEM 191
++V +L V E L F G I+ ++I RD+ +S G+ ++ + A++A+ +
Sbjct: 7 LYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETL 66
Query: 192 NGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFAR 251
N +I+ + ++ + P L+ + +F+ NL I+N +F+
Sbjct: 67 NFDVIKGRPVRIMWSQ-----------RDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSA 115
Query: 252 FGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNG 286
FG I S + D K GF+ F + A A+ MNG
Sbjct: 116 FGNILSCKVACDEKGPKGYGFVHFQKQESAERAIDAMNG 154
>gi|444516866|gb|ELV11302.1| Polyadenylate-binding protein 1-like 2 [Tupaia chinensis]
Length = 200
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 89/168 (52%), Gaps = 11/168 (6%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L P V L +F G + +R+ R+K S G+A + + P +AK+A +
Sbjct: 4 LYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETL 63
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N +I +PV I + + P R VG VF+KNL +T+D + L + F FG
Sbjct: 64 NFDVIKGRPVRIMWSQRDPSLRKSGVG---------NVFIKNLGKTIDNKALYNIFSAFG 114
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFV 203
NI+ K+ DE G KG+GF+ F ++AE+AI MNG + + FV
Sbjct: 115 NILSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFV 161
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 72/159 (45%), Gaps = 16/159 (10%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEM 191
++V +L V E L F G I+ ++I RD+ +S G+ ++ + A++A+ +
Sbjct: 4 LYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETL 63
Query: 192 NGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFAR 251
N +I+ + ++ + P L+ + +F+ NL I+N +F+
Sbjct: 64 NFDVIKGRPVRIMWSQ-----------RDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSA 112
Query: 252 FGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNG 286
FG I S + D K GF+ F + A A+ MNG
Sbjct: 113 FGNILSCKVACDEKGPKGYGFVHFQKQESAERAIDAMNG 151
>gi|268531322|ref|XP_002630787.1| Hypothetical protein CBG02484 [Caenorhabditis briggsae]
Length = 403
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 69/273 (25%), Positives = 133/273 (48%), Gaps = 16/273 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L+V NL+PSV + F + G++ +V + ++ +A + F+ +A +A MN
Sbjct: 44 LYVGNLDPSVSEDFIATLFNQIGSVTKTKVIHDGANDP--YAFVEFSDHGQASQALQTMN 101
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
L+ + + + + ++PGQ+ + + VFV +L VD ++L+ FI FG+
Sbjct: 102 KRLLHDREMKVNWA-VEPGQQPSKIDTT----RHFHVFVGDLSSEVDNQKLREAFIPFGD 156
Query: 157 IIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
+ + K++RD N KSKG+GF+ + + AE+AI +MNG+ + + + A PG +
Sbjct: 157 VSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATRKPGDQEK 216
Query: 216 P------KVKPPLLQPARKN-KIFVANLPSNINNSEFEELFARFGTITSSSLVSDKHIGF 268
P Q + N ++V N+ +N+ E + FA +G I+ + + F
Sbjct: 217 PSNYNEKSYDEVYNQTSGDNTSVYVGNI-ANLTEDEIRQAFASYGRISEVRIFKMQGYAF 275
Query: 269 IEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGT 301
++F A A++ MN + ++ + T
Sbjct: 276 VKFENKNAAAKAITEMNNQDVGGQMVRCSWGKT 308
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 86/178 (48%), Gaps = 15/178 (8%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMN 192
++V NL +V E+ + + F + G++ + K++ D G + + F++F + A +A+ MN
Sbjct: 44 LYVGNLDPSVSEDFIATLFNQIGSVTKTKVIHD--GANDPYAFVEFSDHGQASQALQTMN 101
Query: 193 GRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARF 252
R++ V+ A V P +P + R +FV +L S ++N + E F F
Sbjct: 102 KRLLHDREMKVNWA-------VEPGQQPSKIDTTRHFHVFVGDLSSEVDNQKLREAFIPF 154
Query: 253 GTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKPG 304
G ++ + ++ D K GF+ + + A A+ MNG + ++ + KPG
Sbjct: 155 GDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATRKPG 212
>gi|291407697|ref|XP_002720156.1| PREDICTED: polyadenylate-binding protein 1-like [Oryctolagus
cuniculus]
gi|301792853|ref|XP_002931393.1| PREDICTED: polyadenylate-binding protein 1-like 2-like [Ailuropoda
melanoleuca]
gi|311276495|ref|XP_003135232.1| PREDICTED: polyadenylate-binding protein 1-like 2-like [Sus scrofa]
gi|335306198|ref|XP_003360416.1| PREDICTED: polyadenylate-binding protein 1-like 2-like [Sus scrofa]
gi|281338845|gb|EFB14429.1| hypothetical protein PANDA_022442 [Ailuropoda melanoleuca]
Length = 200
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 89/168 (52%), Gaps = 11/168 (6%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L P V L +F G + +R+ R+K S G+A + + P +AK+A +
Sbjct: 4 LYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETL 63
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N +I +PV I + + P R VG VF+KNL +T+D + L + F FG
Sbjct: 64 NFDVIKGRPVRIMWSQRDPSLRKSGVG---------NVFIKNLGKTIDNKALYNIFSAFG 114
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFV 203
NI+ K+ DE G KG+GF+ F ++AE+AI MNG + + FV
Sbjct: 115 NILSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFV 161
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 72/159 (45%), Gaps = 16/159 (10%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEM 191
++V +L V E L F G I+ ++I RD+ +S G+ ++ + A++A+ +
Sbjct: 4 LYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETL 63
Query: 192 NGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFAR 251
N +I+ + ++ + P L+ + +F+ NL I+N +F+
Sbjct: 64 NFDVIKGRPVRIMWSQ-----------RDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSA 112
Query: 252 FGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNG 286
FG I S + D K GF+ F + A A+ MNG
Sbjct: 113 FGNILSCKVACDEKGPKGYGFVHFQKQESAERAIDAMNG 151
>gi|359081870|ref|XP_003588203.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like 2A [Bos
taurus]
gi|395862938|ref|XP_003803673.1| PREDICTED: polyadenylate-binding protein 1-like 2-like [Otolemur
garnettii]
Length = 200
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 89/168 (52%), Gaps = 11/168 (6%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L P V L +F G + +R+ R+K S G+A + + P +AK+A +
Sbjct: 4 LYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETL 63
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N +I +PV I + + P R VG VF+KNL +T+D + L + F FG
Sbjct: 64 NFDVIKGRPVRIMWSQRDPSLRKSGVG---------NVFIKNLGKTIDNKALYNIFSAFG 114
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFV 203
NI+ K+ DE G KG+GF+ F ++AE+AI MNG + + FV
Sbjct: 115 NILSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFV 161
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 72/159 (45%), Gaps = 16/159 (10%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEM 191
++V +L V E L F G I+ ++I RD+ +S G+ ++ + A++A+ +
Sbjct: 4 LYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETL 63
Query: 192 NGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFAR 251
N +I+ + ++ + P L+ + +F+ NL I+N +F+
Sbjct: 64 NFDVIKGRPVRIMWSQ-----------RDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSA 112
Query: 252 FGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNG 286
FG I S + D K GF+ F + A A+ MNG
Sbjct: 113 FGNILSCKVACDEKGPKGYGFVHFQKQESAERAIDAMNG 151
>gi|452986364|gb|EME86120.1| hypothetical protein MYCFIDRAFT_52503 [Pseudocercospora fijiensis
CIRAD86]
Length = 482
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 73/311 (23%), Positives = 134/311 (43%), Gaps = 40/311 (12%)
Query: 23 RSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGF--AII 80
R+ E NK L+V L+P V L F+ G ++ V++ +KN +S+G+ +
Sbjct: 73 RAAPEPNK----RALYVGGLDPRVTEDVLKQIFETTGHVQSVKIIPDKNFQSKGYNYGFV 128
Query: 81 VFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVE 140
++ P A++A +NG + + + + + +E +FV +L
Sbjct: 129 EYDDPGAAERAMQTLNGRRVHQQEIRVNWA------YQSNTATKEDTSNHFHIFVGDLSN 182
Query: 141 TVDEEELKSHFIKFGNIIEVKIVRD-ENGKSKGFGFIQFFSYKAAEKAIIEMNGRMI--- 196
V++E L F FGN+ E +++ D + G+S+G+GF+ F AEKA+ M+G +
Sbjct: 183 EVNDEVLLQAFSAFGNVSEARVMWDMKTGRSRGYGFVAFRDRGEAEKALSSMDGEWLGSR 242
Query: 197 -----------------QHNSTFVSLAEIVP-GKKVFPKVKPPLLQ------PARKNKIF 232
Q + + P G FP P + P + +
Sbjct: 243 AIRCNWANQKGQPSFSQQQAMAQMGMTPTTPYGHHSFPTQGPQSYETIVSQTPQWQTTCY 302
Query: 233 VANLPSNINNSEFEELFARFGTITSSSLVSDKHIGFIEFIMPKHATHAVSTMNGHVFKSK 292
V NL ++ LF FG +T + SD+ FI+ ++A +A+ ++G+ +
Sbjct: 303 VGNLTPYTTQNDLVPLFQNFGYVTETRFQSDRGFAFIKMDSHENAANAICHLSGYQVNGR 362
Query: 293 PLKVTLSGTKP 303
PLK + +P
Sbjct: 363 PLKCSWGKDRP 373
>gi|426257244|ref|XP_004022242.1| PREDICTED: polyadenylate-binding protein 1-like 2 [Ovis aries]
Length = 200
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 89/168 (52%), Gaps = 11/168 (6%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L P V L +F G + +R+ R+K S G+A + + P +AK+A +
Sbjct: 4 LYVGDLHPEVTEAMLYEKFSPAGPILSIRLCRDKITRRSLGYAYVNYQQPVDAKRALETL 63
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N +I +PV I + + P R VG VF+KNL +T+D + L + F FG
Sbjct: 64 NFDVIKGRPVRIMWSQRDPSLRKSGVG---------NVFIKNLGKTIDNKALYNIFSAFG 114
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFV 203
NI+ K+ DE G KG+GF+ F ++AE+AI MNG + + FV
Sbjct: 115 NILSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFV 161
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 73/161 (45%), Gaps = 20/161 (12%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEM 191
++V +L V E L F G I+ +++ RD+ +S G+ ++ + A++A+ +
Sbjct: 4 LYVGDLHPEVTEAMLYEKFSPAGPILSIRLCRDKITRRSLGYAYVNYQQPVDAKRALETL 63
Query: 192 NGRMIQHNSTFVSLAEIVPGK--KVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELF 249
N +++ G+ ++ + P L+ + +F+ NL I+N +F
Sbjct: 64 N-------------FDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIF 110
Query: 250 ARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNG 286
+ FG I S + D K GF+ F + A A+ MNG
Sbjct: 111 SAFGNILSCKVACDEKGPKGYGFVHFQKQESAERAIDAMNG 151
>gi|119923699|ref|XP_599343.3| PREDICTED: poly(A) binding protein, cytoplasmic 1-like 2A [Bos
taurus]
gi|297493007|ref|XP_002700050.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like 2A [Bos
taurus]
gi|358420984|ref|XP_003584787.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like 2A [Bos
taurus]
gi|296470850|tpg|DAA12965.1| TPA: PABPC1L2B protein-like [Bos taurus]
gi|440892195|gb|ELR45496.1| Polyadenylate-binding protein 1-like 2 [Bos grunniens mutus]
Length = 200
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 89/168 (52%), Gaps = 11/168 (6%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L P V L +F G + +R+ R+K S G+A + + P +AK+A +
Sbjct: 4 LYVGDLHPEVTEAMLYEKFSPAGPILSIRLCRDKITRRSLGYAYVNYQQPVDAKRALETL 63
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N +I +PV I + + P R VG VF+KNL +T+D + L + F FG
Sbjct: 64 NFDVIKGRPVRIMWSQRDPSLRKSGVG---------NVFIKNLGKTIDNKALYNIFSAFG 114
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFV 203
NI+ K+ DE G KG+GF+ F ++AE+AI MNG + + FV
Sbjct: 115 NILSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFV 161
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 72/159 (45%), Gaps = 16/159 (10%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEM 191
++V +L V E L F G I+ +++ RD+ +S G+ ++ + A++A+ +
Sbjct: 4 LYVGDLHPEVTEAMLYEKFSPAGPILSIRLCRDKITRRSLGYAYVNYQQPVDAKRALETL 63
Query: 192 NGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFAR 251
N +I+ + ++ + P L+ + +F+ NL I+N +F+
Sbjct: 64 NFDVIKGRPVRIMWSQ-----------RDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSA 112
Query: 252 FGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNG 286
FG I S + D K GF+ F + A A+ MNG
Sbjct: 113 FGNILSCKVACDEKGPKGYGFVHFQKQESAERAIDAMNG 151
>gi|61175237|ref|NP_001012995.1| polyadenylate-binding protein 1-like 2 [Homo sapiens]
gi|109948285|ref|NP_001035971.1| polyadenylate-binding protein 1-like 2 [Homo sapiens]
gi|402910552|ref|XP_003917938.1| PREDICTED: polyadenylate-binding protein 1-like 2 [Papio anubis]
gi|426396426|ref|XP_004064444.1| PREDICTED: polyadenylate-binding protein 1-like 2 [Gorilla gorilla
gorilla]
gi|74755614|sp|Q5JQF8.1|PAP1M_HUMAN RecName: Full=Polyadenylate-binding protein 1-like 2; AltName:
Full=RNA-binding motif protein 32; AltName:
Full=RNA-binding protein 32
gi|119619077|gb|EAW98671.1| hCG1811470 [Homo sapiens]
gi|187951483|gb|AAI36493.1| PABPC1L2A protein [Homo sapiens]
gi|261861056|dbj|BAI47050.1| poly(A) binding protein, cytoplasmic 1-like 2A [synthetic
construct]
gi|355704922|gb|EHH30847.1| RNA-binding protein 32 [Macaca mulatta]
gi|355767263|gb|EHH62597.1| RNA-binding protein 32 [Macaca fascicularis]
gi|380784435|gb|AFE64093.1| polyadenylate-binding protein 1-like 2 [Macaca mulatta]
Length = 200
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 89/168 (52%), Gaps = 11/168 (6%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L P V L +F G + +R+ R+K S G+A + + P +AK+A +
Sbjct: 4 LYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETL 63
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N +I +PV I + + P R VG VF+KNL +T+D + L + F FG
Sbjct: 64 NFDVIKGRPVRIMWSQRDPSLRKSGVG---------NVFIKNLGKTIDNKALYNIFSAFG 114
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFV 203
NI+ K+ DE G KG+GF+ F ++AE+AI MNG + + FV
Sbjct: 115 NILSCKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFV 161
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 72/159 (45%), Gaps = 16/159 (10%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEM 191
++V +L V E L F G I+ ++I RD+ +S G+ ++ + A++A+ +
Sbjct: 4 LYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETL 63
Query: 192 NGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFAR 251
N +I+ + ++ + P L+ + +F+ NL I+N +F+
Sbjct: 64 NFDVIKGRPVRIMWSQ-----------RDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSA 112
Query: 252 FGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNG 286
FG I S + D K GF+ F + A A+ MNG
Sbjct: 113 FGNILSCKVACDEKGPKGYGFVHFQKQESAERAIDVMNG 151
>gi|339246497|ref|XP_003374882.1| putative RNA recognition motif protein [Trichinella spiralis]
gi|316971853|gb|EFV55580.1| putative RNA recognition motif protein [Trichinella spiralis]
Length = 758
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 78/275 (28%), Positives = 132/275 (48%), Gaps = 42/275 (15%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ +D++A+ + F FG + +VA ++N S+G+ + G
Sbjct: 104 IKNLDKDIDHKAIYDTFSNFGNILSCKVATDENGVSKGYGYV----------------GK 147
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
I QR + +G E K V+VKN E ++ L F KFG I
Sbjct: 148 FIPR------------AQRMREIG--ETTRKFTNVYVKNFDENFTDQCLVDLFSKFGKI- 192
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNG-RMIQHNSTFVSLAEIVPGKKVFPK 217
+ +V E+ KSKGFGF+ F + + AE A+ EMN ++ +V A+ ++ K
Sbjct: 193 QSCVVMKEDDKSKGFGFVSFENPEDAEAAVKEMNEYQLPSGKKLYVGRAQKKAERQAELK 252
Query: 218 VKPPLLQPARKNK-----IFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIG 267
+ +L+ R + +++ NL ++++++ + F +FG ITS+ +++D K G
Sbjct: 253 RRYEMLKLERIQQYEGVNLYLKNLDDSVDDAQLRKAFEKFGVITSAKVMTDEKGQSKGFG 312
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F+ F P AT AVS MN +KPL V L+ K
Sbjct: 313 FVCFSSPDEATRAVSEMNNQKLGNKPLYVALAQRK 347
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 99/179 (55%), Gaps = 9/179 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
++V N + + +Q L++ F KFG ++ V ++D+S+GF + F P +A+ A EMN
Sbjct: 168 VYVKNFDENFTDQCLVDLFSKFGKIQSC-VVMKEDDKSKGFGFVSFENPEDAEAAVKEMN 226
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEE--------KQYKKDKVFVKNLVETVDEEELK 148
+ + S + K +R + +QY+ +++KNL ++VD+ +L+
Sbjct: 227 EYQLPSGKKLYVGRAQKKAERQAELKRRYEMLKLERIQQYEGVNLYLKNLDDSVDDAQLR 286
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
F KFG I K++ DE G+SKGFGF+ F S A +A+ EMN + + + +V+LA+
Sbjct: 287 KAFEKFGVITSAKVMTDEKGQSKGFGFVCFSSPDEATRAVSEMNNQKLGNKPLYVALAQ 345
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/260 (26%), Positives = 111/260 (42%), Gaps = 46/260 (17%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L P V L +F G + +RV R+ S G+A + + +A++A M
Sbjct: 14 LYVGDLHPDVTEAMLFEKFSHAGPVLSIRVCRDAVTRRSLGYAYVNYQQTPDAERALDTM 73
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N + +P+ I + + P R VG VF+KNL + +D + + F FG
Sbjct: 74 NFDPVFGRPIRIMWSQRDPSLRRSGVG---------NVFIKNLDKDIDHKAIYDTFSNFG 124
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ DENG SKG+G++ F +A + EI + F
Sbjct: 125 NILSCKVATDENGVSKGYGYVGKFIPRAQR-------------------MREIGETTRKF 165
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGFIEF 271
++V N N + +LF++FG I S ++ + K GF+ F
Sbjct: 166 -------------TNVYVKNFDENFTDQCLVDLFSKFGKIQSCVVMKEDDKSKGFGFVSF 212
Query: 272 IMPKHATHAVSTMNGHVFKS 291
P+ A AV MN + S
Sbjct: 213 ENPEDAEAAVKEMNEYQLPS 232
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 55/93 (59%)
Query: 27 ENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPA 86
E + Y+ L++ NL+ SVD+ L F+KFG + +V ++ +S+GF + F++P
Sbjct: 261 ERIQQYEGVNLYLKNLDDSVDDAQLRKAFEKFGVITSAKVMTDEKGQSKGFGFVCFSSPD 320
Query: 87 EAKKARVEMNGHLIGSKPVIITFVELKPGQRSK 119
EA +A EMN +G+KP+ + + K ++++
Sbjct: 321 EATRAVSEMNNQKLGNKPLYVALAQRKEDRKAQ 353
>gi|443919574|gb|ELU39701.1| RNA recognition motif domain-containing protein [Rhizoctonia solani
AG-1 IA]
Length = 716
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 63/178 (35%), Positives = 99/178 (55%), Gaps = 6/178 (3%)
Query: 22 ARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKND-ESRGFAII 80
A+ K + + + N + V L +VDN L EF+ GT+ RV ++N +SRGFA +
Sbjct: 97 AKKAKTDTEAGESNTVFVGRLSWNVDNDWLAQEFQGCGTVVAARVQMDRNSGKSRGFAYV 156
Query: 81 VFNTPAEAKKARVEMNGHLIGSKPVIITFVELK---PGQRSKPVGPEEKQYKKDKVFVKN 137
F++PAEA+KA EMNG I + V + + + P +R++ G E Q +FV N
Sbjct: 157 EFSSPAEAQKAVEEMNGKQIDGREVNVDISQPRQPNPEKRAQVFGDSESQ-PSTTLFVGN 215
Query: 138 LVETVDEEELKSHFIKFGNIIEVKIVRD-ENGKSKGFGFIQFFSYKAAEKAIIEMNGR 194
L E+ L + F +FG++ V++ D E+GK KGFG+++F + A KA M G+
Sbjct: 216 LSWNTTEDGLWTAFGEFGDVTHVRLPTDQESGKPKGFGYVEFGDQEGATKAYEAMKGK 273
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 82/179 (45%), Gaps = 17/179 (9%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAIIEM 191
VFV L VD + L F G ++ ++ D N GKS+GF +++F S A+KA+ EM
Sbjct: 112 VFVGRLSWNVDNDWLAQEFQGCGTVVAARVQMDRNSGKSRGFAYVEFSSPAEAQKAVEEM 171
Query: 192 NGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLL-----QPARKNKIFVANLPSNINNSEFE 246
NG+ I V +++ ++ P+ + + QP+ +FV NL N
Sbjct: 172 NGKQIDGREVNVDISQ---PRQPNPEKRAQVFGDSESQPS--TTLFVGNLSWNTTEDGLW 226
Query: 247 ELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299
F FG +T L +D K G++EF + AT A M G + L++ S
Sbjct: 227 TAFGEFGDVTHVRLPTDQESGKPKGFGYVEFGDQEGATKAYEAMKGKDLDGRTLRLDYS 285
Score = 41.2 bits (95), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
Query: 229 NKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKHIG------FIEFIMPKHATHAVS 282
N +FV L N++N + F GT+ ++ + D++ G ++EF P A AV
Sbjct: 110 NTVFVGRLSWNVDNDWLAQEFQGCGTVVAARVQMDRNSGKSRGFAYVEFSSPAEAQKAVE 169
Query: 283 TMNGHVFKSKPLKVTLS 299
MNG + + V +S
Sbjct: 170 EMNGKQIDGREVNVDIS 186
>gi|68070939|ref|XP_677383.1| polyadenylate-binding protein [Plasmodium berghei strain ANKA]
gi|56497479|emb|CAH95361.1| polyadenylate-binding protein, putative [Plasmodium berghei]
Length = 833
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 119/254 (46%), Gaps = 22/254 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L V L F G + +RV R+ +S G+A + ++ A+A++A +
Sbjct: 18 LYVGDLSEDVTEAVLYEIFNTVGHVLSIRVCRDSVTRKSLGYAYVNYHNLADAERALDTL 77
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N I +P + + P R G +FVKNL +T+D + L F FG
Sbjct: 78 NYTNIKGQPARLMWSHRDPSLRKSGTG---------NIFVKNLDKTIDNKALFDTFSMFG 128
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ DE GKSK +GF+ + ++A++AI ++NG + + +V F
Sbjct: 129 NILSCKVATDEFGKSKNYGFVHYEDEESAKEAIEKVNGMQLGSKNVYVGH---------F 179
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD---KHIGFIEFI 272
K + ++V N P + + ++LF+ +G ITS + SD + FI +
Sbjct: 180 IKKSERATNDTKFTNLYVKNFPDTVTEAHLKQLFSPYGEITSMIVKSDNKNRKFCFINYS 239
Query: 273 MPKHATHAVSTMNG 286
A +A+ +NG
Sbjct: 240 DADSARNAMENLNG 253
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 51/75 (68%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMN 192
+++KNL ++++++ LK F +G I K+++D+ +SKGFGF+ F +++ A KA+ EM+
Sbjct: 409 LYIKNLDDSMNDQTLKELFEPYGTITSAKVMKDDKDQSKGFGFVCFGTHEEANKAVTEMH 468
Query: 193 GRMIQHNSTFVSLAE 207
++I +V LAE
Sbjct: 469 LKIINGKPLYVGLAE 483
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 79/170 (46%), Gaps = 17/170 (10%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEM 191
++V +L E V E L F G+++ +++ RD KS G+ ++ + + AE+A+ +
Sbjct: 18 LYVGDLSEDVTEAVLYEIFNTVGHVLSIRVCRDSVTRKSLGYAYVNYHNLADAERALDTL 77
Query: 192 NGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFAR 251
N I+ P + ++ P L + N IFV NL I+N + F+
Sbjct: 78 NYTNIKGQ----------PARLMWSHRDPSLRKSGTGN-IFVKNLDKTIDNKALFDTFSM 126
Query: 252 FGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
FG I S + +D K+ GF+ + + A A+ +NG SK + V
Sbjct: 127 FGNILSCKVATDEFGKSKNYGFVHYEDEESAKEAIEKVNGMQLGSKNVYV 176
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 49/83 (59%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L++ NL+ S+++Q L F+ +GT+ +V ++ D+S+GF + F T EA KA EM+
Sbjct: 409 LYIKNLDDSMNDQTLKELFEPYGTITSAKVMKDDKDQSKGFGFVCFGTHEEANKAVTEMH 468
Query: 97 GHLIGSKPVIITFVELKPGQRSK 119
+I KP+ + E + + S+
Sbjct: 469 LKIINGKPLYVGLAEKREHRLSR 491
Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 5/74 (6%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMN 285
+++ NL ++N+ +ELF +GTITS+ ++ D K GF+ F + A AV+ M+
Sbjct: 409 LYIKNLDDSMNDQTLKELFEPYGTITSAKVMKDDKDQSKGFGFVCFGTHEEANKAVTEMH 468
Query: 286 GHVFKSKPLKVTLS 299
+ KPL V L+
Sbjct: 469 LKIINGKPLYVGLA 482
>gi|27469824|gb|AAH41956.1| PABPC1L2B protein [Homo sapiens]
Length = 243
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 93/180 (51%), Gaps = 11/180 (6%)
Query: 25 NKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFN 83
+ E N ++ L+V +L P V L +F G + + + R+K S G+A + +
Sbjct: 35 DCEGNPDFQMASLYVGDLHPEVTEAMLYEKFSPAGPILSISICRDKITRRSLGYAYVNYQ 94
Query: 84 TPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVD 143
P +AK+A +N +I +PV I + + P R VG VF+KNL +T+D
Sbjct: 95 QPVDAKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVG---------NVFIKNLGKTID 145
Query: 144 EEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFV 203
+ L + F FGNI+ K+ DE G KG+GF+ F ++AE+AI MNG + + FV
Sbjct: 146 NKALYNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFV 204
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 73/164 (44%), Gaps = 16/164 (9%)
Query: 128 YKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEK 186
++ ++V +L V E L F G I+ + I RD+ +S G+ ++ + A++
Sbjct: 42 FQMASLYVGDLHPEVTEAMLYEKFSPAGPILSISICRDKITRRSLGYAYVNYQQPVDAKR 101
Query: 187 AIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFE 246
A+ +N +I+ + ++ + P L+ + +F+ NL I+N
Sbjct: 102 ALETLNFDVIKGRPVRIMWSQ-----------RDPSLRKSGVGNVFIKNLGKTIDNKALY 150
Query: 247 ELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNG 286
+F+ FG I S + D K GF+ F + A A+ MNG
Sbjct: 151 NIFSAFGNILSCKVACDEKGPKGYGFVHFQKQESAERAIDVMNG 194
>gi|126649325|ref|XP_001388334.1| poly(a)-binding protein fabm [Cryptosporidium parvum Iowa II]
gi|32398879|emb|CAD98589.1| putative poly(a)-binding protein fabm, possible [Cryptosporidium
parvum]
gi|126117428|gb|EAZ51528.1| poly(a)-binding protein fabm, putative [Cryptosporidium parvum Iowa
II]
Length = 746
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 80/282 (28%), Positives = 127/282 (45%), Gaps = 31/282 (10%)
Query: 28 NNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPA 86
NN V L+V +L+ V L F + VR+ R+ S G+A + +N+ A
Sbjct: 5 NNVVPVSASLYVGDLDADVTETMLYEIFNSVAVVSSVRICRDALTRRSLGYAYVNYNSVA 64
Query: 87 EAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEE 146
+A++A +N I +P I + P R G VFVKNL +++D +
Sbjct: 65 DAERALDTLNFTCIRGRPCRIMWCLRDPASRRNNDG---------NVFVKNLDKSIDNKT 115
Query: 147 LKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLA 206
L F FGNI+ KI D GKS G+GFI F +A++AI +NG ++ +V
Sbjct: 116 LFDTFSLFGNIMSCKIATDVEGKSLGYGFIHFEHADSAKEAISRLNGAVLGDRPIYVG-- 173
Query: 207 EIVPGKKVFPKVKPPLLQPARKNK----IFVANLPSNINNSEFEELFARFGTITSSSLVS 262
K + + + K+K ++V ++P + ++F +G I+S L S
Sbjct: 174 ----------KFQKKAERFSEKDKTFTNVYVKHIPKSWTEDLLYKIFGVYGKISSLVLQS 223
Query: 263 D---KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGT 301
D + GF+ F P A AV+ + H P+ V L T
Sbjct: 224 DSKGRPFGFVNFENPDSAKAAVAAL--HNALVTPVGVELDST 263
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 54/82 (65%)
Query: 126 KQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAE 185
++Y+ ++VKNL ++++EE+L+S F FG + V I DE+G S+GFGF+ F S A
Sbjct: 358 QRYQGVNLYVKNLADSINEEDLRSMFEPFGTVSSVSIKTDESGVSRGFGFVSFLSPDEAT 417
Query: 186 KAIIEMNGRMIQHNSTFVSLAE 207
KAI EM+ ++++ +V L E
Sbjct: 418 KAITEMHLKLVRGKPLYVGLHE 439
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 52/88 (59%)
Query: 26 KENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTP 85
KE+++ Y+ L+V NL S++ + L + F+ FGT+ V + +++ SRGF + F +P
Sbjct: 354 KESHQRYQGVNLYVKNLADSINEEDLRSMFEPFGTVSSVSIKTDESGVSRGFGFVSFLSP 413
Query: 86 AEAKKARVEMNGHLIGSKPVIITFVELK 113
EA KA EM+ L+ KP+ + E K
Sbjct: 414 DEATKAITEMHLKLVRGKPLYVGLHERK 441
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 59/112 (52%), Gaps = 9/112 (8%)
Query: 196 IQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKN----KIFVANLPSNINNSEFEELFAR 251
+Q N +VS A+ ++V K + ++ + + ++V NL +IN + +F
Sbjct: 326 VQPNRLYVSRAQKKNERQVVLKSQHEAVKESHQRYQGVNLYVKNLADSINEEDLRSMFEP 385
Query: 252 FGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTL 298
FGT++S S+ +D + GF+ F+ P AT A++ M+ + + KPL V L
Sbjct: 386 FGTVSSVSIKTDESGVSRGFGFVSFLSPDEATKAITEMHLKLVRGKPLYVGL 437
>gi|294939182|ref|XP_002782349.1| RNA-binding motif, single-stranded-interacting protein, putative
[Perkinsus marinus ATCC 50983]
gi|239893941|gb|EER14144.1| RNA-binding motif, single-stranded-interacting protein, putative
[Perkinsus marinus ATCC 50983]
Length = 266
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 65/225 (28%), Positives = 106/225 (47%), Gaps = 18/225 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+ +L P V+ L F G + +RV R+ +S G+A I F+ A+A++A +
Sbjct: 50 LYAGDLAPDVNEAVLYEVFNGIGPVASIRVCRDSVTRKSLGYAYINFHNVADAERALDTL 109
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N I +P + + P R G V+VKNL +D + L F FG
Sbjct: 110 NYSPINGRPCRLMWSHRDPALRRSGAG---------NVYVKNLDRNIDNKALYDTFSLFG 160
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ +GKS+GFGF+ F S ++AE AI ++NG I + +V+ KK
Sbjct: 161 NILSCKVALTPDGKSRGFGFVHFESDESAEAAIAKLNGMQIGEKTVYVAQF-----KKTA 215
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSL 260
+ P +++ ++P + + E F FG ITS ++
Sbjct: 216 DRSDG---SPKNFTNVYIKHIPPSWTEEKIREEFGAFGEITSFAM 257
>gi|91086169|ref|XP_970456.1| PREDICTED: similar to TIA-1 homolog [Tribolium castaneum]
gi|270010230|gb|EFA06678.1| hypothetical protein TcasGA2_TC009608 [Tribolium castaneum]
Length = 364
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 74/290 (25%), Positives = 126/290 (43%), Gaps = 25/290 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L+V NL+PSV L F + G ++ ++ R ++ +A + F A A MN
Sbjct: 10 LYVGNLDPSVSEDLLCTLFSQIGPVKGCKIIREPGNDP--YAFVEFTNHQSASTALAAMN 67
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
L K + + + PG + P++ +FV +L ++ E L+ F FG
Sbjct: 68 KRLFLDKEMKVNWA-TSPGNQ-----PKQDTSNHHHIFVGDLSPEIETETLREAFAPFGE 121
Query: 157 IIEVKIVRD-ENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVP----G 211
I +IVRD + KSKG+ F+ F AE AI MNG+ + S + + P
Sbjct: 122 ISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAIQAMNGQWLGSRSIRTNWSTRKPPPPKT 181
Query: 212 KKVFPKVKPPLL-----QPARKN-KIFVANLPSNINNSEFEELFARFGTITSSSLVSDKH 265
+K + K P Q + N ++ + + ++ F++FG I + DK
Sbjct: 182 EKAAQRAKQPTFDEVYNQSSPTNCTVYCGGFTTGLTEDLMQKTFSQFGVIQDIRVFKDKG 241
Query: 266 IGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLS------GTKPGVSITN 309
FI+F + ATHA+ T++ + +K G PG ++T+
Sbjct: 242 YAFIKFATKESATHAIETIHNTEINGQMVKCFWGKENGGMGADPGAAMTS 291
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 91/191 (47%), Gaps = 23/191 (12%)
Query: 25 NKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKND-ESRGFAIIVFN 83
N+ + + V +L P ++ + L F FG + + R+ R+ +S+G+A + F
Sbjct: 86 NQPKQDTSNHHHIFVGDLSPEIETETLREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFV 145
Query: 84 TPAEAKKARVEMNGHLIGSKPVIITFVELKP--------GQRSK-PVGPE---EKQYKKD 131
AEA+ A MNG +GS+ + + KP QR+K P E +
Sbjct: 146 KKAEAENAIQAMNGQWLGSRSIRTNWSTRKPPPPKTEKAAQRAKQPTFDEVYNQSSPTNC 205
Query: 132 KVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAI--- 188
V+ + E+ ++ F +FG I ++++ +D KG+ FI+F + ++A AI
Sbjct: 206 TVYCGGFTTGLTEDLMQKTFSQFGVIQDIRVFKD-----KGYAFIKFATKESATHAIETI 260
Query: 189 --IEMNGRMIQ 197
E+NG+M++
Sbjct: 261 HNTEINGQMVK 271
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/199 (27%), Positives = 87/199 (43%), Gaps = 16/199 (8%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMN 192
++V NL +V E+ L + F + G + KI+R+ + F++F ++++A A+ MN
Sbjct: 10 LYVGNLDPSVSEDLLCTLFSQIGPVKGCKIIREPGNDP--YAFVEFTNHQSASTALAAMN 67
Query: 193 GRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARF 252
R+ V+ A PG + P + + IFV +L I E FA F
Sbjct: 68 KRLFLDKEMKVNWA-TSPGNQ-------PKQDTSNHHHIFVGDLSPEIETETLREAFAPF 119
Query: 253 GTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKPGVS 306
G I++ +V D K F+ F+ A +A+ MNG S+ ++ S KP
Sbjct: 120 GEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAIQAMNGQWLGSRSIRTNWSTRKPPPP 179
Query: 307 ITNPTKAPKKPAYIDEVKN 325
T K DEV N
Sbjct: 180 KTEKAAQRAKQPTFDEVYN 198
>gi|67623121|ref|XP_667843.1| poly(a)-binding protein fabm [Cryptosporidium hominis TU502]
gi|54659004|gb|EAL37605.1| poly(a)-binding protein fabm [Cryptosporidium hominis]
Length = 746
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 80/282 (28%), Positives = 127/282 (45%), Gaps = 31/282 (10%)
Query: 28 NNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPA 86
NN V L+V +L+ V L F + VR+ R+ S G+A + +N+ A
Sbjct: 5 NNVVPVSASLYVGDLDADVTETMLYEIFNSVAVVSSVRICRDALTRRSLGYAYVNYNSVA 64
Query: 87 EAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEE 146
+A++A +N I +P I + P R G VFVKNL +++D +
Sbjct: 65 DAERALDTLNFTCIRGRPCRIMWCLRDPASRRNNDG---------NVFVKNLDKSIDNKT 115
Query: 147 LKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLA 206
L F FGNI+ KI D GKS G+GFI F +A++AI +NG ++ +V
Sbjct: 116 LFDTFSLFGNIMSCKIATDVEGKSLGYGFIHFEHADSAKEAISRLNGAVLGDRPIYVG-- 173
Query: 207 EIVPGKKVFPKVKPPLLQPARKNK----IFVANLPSNINNSEFEELFARFGTITSSSLVS 262
K + + + K+K ++V ++P + ++F +G I+S L S
Sbjct: 174 ----------KFQKKAERFSEKDKTFTNVYVKHIPKSWTEDLLYKIFGVYGKISSLVLQS 223
Query: 263 D---KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGT 301
D + GF+ F P A AV+ + H P+ V L T
Sbjct: 224 DSKGRPFGFVNFENPDSAKAAVAAL--HNALVTPVGVELDST 263
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 54/82 (65%)
Query: 126 KQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAE 185
++Y+ ++VKNL ++++EE+L+S F FG + V I DE+G S+GFGF+ F S A
Sbjct: 358 QRYQGVNLYVKNLADSINEEDLRSMFEPFGTVSSVSIKTDESGVSRGFGFVSFLSPDEAT 417
Query: 186 KAIIEMNGRMIQHNSTFVSLAE 207
KAI EM+ ++++ +V L E
Sbjct: 418 KAITEMHLKLVRGKPLYVGLHE 439
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 52/88 (59%)
Query: 26 KENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTP 85
KE+++ Y+ L+V NL S++ + L + F+ FGT+ V + +++ SRGF + F +P
Sbjct: 354 KESHQRYQGVNLYVKNLADSINEEDLRSMFEPFGTVSSVSIKTDESGVSRGFGFVSFLSP 413
Query: 86 AEAKKARVEMNGHLIGSKPVIITFVELK 113
EA KA EM+ L+ KP+ + E K
Sbjct: 414 DEATKAITEMHLKLVRGKPLYVGLHERK 441
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 59/112 (52%), Gaps = 9/112 (8%)
Query: 196 IQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKN----KIFVANLPSNINNSEFEELFAR 251
+Q N +VS A+ ++V K + ++ + + ++V NL +IN + +F
Sbjct: 326 VQPNRLYVSRAQKKNERQVVLKSQHEAVKESHQRYQGVNLYVKNLADSINEEDLRSMFEP 385
Query: 252 FGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTL 298
FGT++S S+ +D + GF+ F+ P AT A++ M+ + + KPL V L
Sbjct: 386 FGTVSSVSIKTDESGVSRGFGFVSFLSPDEATKAITEMHLKLVRGKPLYVGL 437
>gi|82595449|ref|XP_725855.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23481012|gb|EAA17420.1| polyA binding protein-related [Plasmodium yoelii yoelii]
Length = 859
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 119/254 (46%), Gaps = 22/254 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L V L F G + +RV R+ +S G+A + ++ A+A++A +
Sbjct: 18 LYVGDLSEDVTEAVLYEIFNTVGHVLSIRVCRDSVTRKSLGYAYVNYHNLADAERALDTL 77
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N I +P + + P R G +FVKNL +T+D + L F FG
Sbjct: 78 NYTNIKGQPARLMWSHRDPSLRKSGTG---------NIFVKNLDKTIDNKALFDTFSMFG 128
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ DE GKSK +GF+ + ++A++AI ++NG + + +V F
Sbjct: 129 NILSCKVATDEFGKSKNYGFVHYEDEESAKEAIEKVNGMQLGSKNVYVGH---------F 179
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD---KHIGFIEFI 272
K + ++V N P + + ++LF+ +G ITS + SD + FI +
Sbjct: 180 IKKSERATNDTKFTNLYVKNFPDTVTEAHLKQLFSPYGEITSMIVKSDNKNRKFCFINYS 239
Query: 273 MPKHATHAVSTMNG 286
A +A+ +NG
Sbjct: 240 DADSARNAMENLNG 253
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 51/75 (68%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMN 192
+++KNL ++++++ LK F +G I K+++D+ +SKGFGF+ F +++ A KA+ EM+
Sbjct: 412 LYIKNLDDSMNDQTLKELFEPYGTITSAKVMKDDKDQSKGFGFVCFGTHEEANKAVTEMH 471
Query: 193 GRMIQHNSTFVSLAE 207
++I +V LAE
Sbjct: 472 LKIINGKPLYVGLAE 486
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 79/170 (46%), Gaps = 17/170 (10%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEM 191
++V +L E V E L F G+++ +++ RD KS G+ ++ + + AE+A+ +
Sbjct: 18 LYVGDLSEDVTEAVLYEIFNTVGHVLSIRVCRDSVTRKSLGYAYVNYHNLADAERALDTL 77
Query: 192 NGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFAR 251
N I+ P + ++ P L + N IFV NL I+N + F+
Sbjct: 78 NYTNIKGQ----------PARLMWSHRDPSLRKSGTGN-IFVKNLDKTIDNKALFDTFSM 126
Query: 252 FGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
FG I S + +D K+ GF+ + + A A+ +NG SK + V
Sbjct: 127 FGNILSCKVATDEFGKSKNYGFVHYEDEESAKEAIEKVNGMQLGSKNVYV 176
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 49/83 (59%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L++ NL+ S+++Q L F+ +GT+ +V ++ D+S+GF + F T EA KA EM+
Sbjct: 412 LYIKNLDDSMNDQTLKELFEPYGTITSAKVMKDDKDQSKGFGFVCFGTHEEANKAVTEMH 471
Query: 97 GHLIGSKPVIITFVELKPGQRSK 119
+I KP+ + E + + S+
Sbjct: 472 LKIINGKPLYVGLAEKREQRLSR 494
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 5/74 (6%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMN 285
+++ NL ++N+ +ELF +GTITS+ ++ D K GF+ F + A AV+ M+
Sbjct: 412 LYIKNLDDSMNDQTLKELFEPYGTITSAKVMKDDKDQSKGFGFVCFGTHEEANKAVTEMH 471
Query: 286 GHVFKSKPLKVTLS 299
+ KPL V L+
Sbjct: 472 LKIINGKPLYVGLA 485
>gi|301125993|ref|XP_002909814.1| polyadenylate-binding protein, putative [Phytophthora infestans
T30-4]
gi|262103703|gb|EEY61755.1| polyadenylate-binding protein, putative [Phytophthora infestans
T30-4]
Length = 587
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 78/284 (27%), Positives = 135/284 (47%), Gaps = 26/284 (9%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVA-RNKNDESRGFAIIVFNTPAEAKKARVEM 95
+ V NL+ S+DN+AL + F FG + +VA + S+G+ + + T A +A ++
Sbjct: 81 IFVKNLDTSIDNKALYDTFSLFGNILSCKVAIEHTTGNSKGYGYVHYETAEAATEAIAKI 140
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
NG LI V + + + + P+ + +VKN+ + +L F FG
Sbjct: 141 NGMLIAGTEVFVGHFQKRQDR------PDADDWTN--CYVKNIPTQWTDADLLKEFEPFG 192
Query: 156 NIIEVKIVRDENG--KSKGFGFIQFFSYKAAEKAIIEMNGRMIQ-----HNSTFVSLAEI 208
++ +++D ++GFGF+ + AA KA+ +NG+ +V A+
Sbjct: 193 KVLSAVVMKDNANPDHNRGFGFVNYEESDAAHKAVDALNGKSYPAGEGLDTEMYVGKAQK 252
Query: 209 VPGKKVFPKVKPPLLQPARKNK-----IFVANLPSNINNSEFEELFARFGTITSSSLVSD 263
++ + K L+ R NK ++V NL +++ E E FA GTITSS ++ D
Sbjct: 253 RSERERELRNKFEQLKMERINKYQGVNLYVKNLDDQLSDDELREAFAECGTITSSRVMRD 312
Query: 264 -----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
+ GF+ F P+ A AV+ MNG + KP+ V L+ K
Sbjct: 313 PNGNSRGFGFVCFSTPEEANKAVAEMNGKLISGKPVYVALAQRK 356
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 116/255 (45%), Gaps = 28/255 (10%)
Query: 46 VDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKP 104
V + + + K G + +RV R+ S G+A + F+ A+A++A MN I P
Sbjct: 2 VSSVGVFYKIKAVGPVASIRVCRDAVTRRSLGYAYVNFHNVADAERALDTMNFTSIKGVP 61
Query: 105 VIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKI-V 163
I + + P R VG +FVKNL ++D + L F FGNI+ K+ +
Sbjct: 62 CRIMWSQRDPSLRKSGVG---------NIFVKNLDTSIDNKALYDTFSLFGNILSCKVAI 112
Query: 164 RDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLL 223
G SKG+G++ + + +AA +AI ++NG +I FV + ++ P
Sbjct: 113 EHTTGNSKGYGYVHYETAEAATEAIAKINGMLIAGTEVFVGHFQ---KRQDRPDAD---- 165
Query: 224 QPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-------KHIGFIEFIMPKH 276
+V N+P+ +++ + F FG + S+ ++ D + GF+ +
Sbjct: 166 ---DWTNCYVKNIPTQWTDADLLKEFEPFGKVLSAVVMKDNANPDHNRGFGFVNYEESDA 222
Query: 277 ATHAVSTMNGHVFKS 291
A AV +NG + +
Sbjct: 223 AHKAVDALNGKSYPA 237
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 50/88 (56%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L+V NL+ + + L F + GT+ RV R+ N SRGF + F+TP EA KA
Sbjct: 275 YQGVNLYVKNLDDQLSDDELREAFAECGTITSSRVMRDPNGNSRGFGFVCFSTPEEANKA 334
Query: 92 RVEMNGHLIGSKPVIITFVELKPGQRSK 119
EMNG LI KPV + + K +R++
Sbjct: 335 VAEMNGKLISGKPVYVALAQRKEVRRAQ 362
>gi|431844457|gb|ELK01429.1| Polyadenylate-binding protein 1-like 2 [Pteropus alecto]
Length = 200
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 89/168 (52%), Gaps = 11/168 (6%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L P V L +F G + +R+ R+K S G+A + + P +AK+A +
Sbjct: 4 LYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPMDAKRALETL 63
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N +I +PV I + + P R VG VF+KNL +++D + L + F FG
Sbjct: 64 NFDVIKGRPVRIMWSQRDPSLRKSGVG---------NVFIKNLGKSIDNKALYNIFSAFG 114
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFV 203
NI+ K+ DE G KG+GF+ F ++AE+AI MNG + + FV
Sbjct: 115 NILSCKVACDEKG-PKGYGFVHFQKQESAERAINAMNGMFLNYRKIFV 161
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 75/161 (46%), Gaps = 20/161 (12%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEM 191
++V +L V E L F G I+ ++I RD+ +S G+ ++ + A++A+ +
Sbjct: 4 LYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPMDAKRALETL 63
Query: 192 NGRMIQHNSTFVSLAEIVPGK--KVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELF 249
N +++ G+ ++ + P L+ + +F+ NL +I+N +F
Sbjct: 64 N-------------FDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKSIDNKALYNIF 110
Query: 250 ARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNG 286
+ FG I S + D K GF+ F + A A++ MNG
Sbjct: 111 SAFGNILSCKVACDEKGPKGYGFVHFQKQESAERAINAMNG 151
>gi|389586343|dbj|GAB69072.1| polyadenylate-binding protein, partial [Plasmodium cynomolgi strain
B]
Length = 883
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 68/254 (26%), Positives = 121/254 (47%), Gaps = 22/254 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L V L F G + +RV R+ +S G+A + ++ A+A++A +
Sbjct: 18 LYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALDTL 77
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N I +P + + P R G +FVKNL +++D + L F FG
Sbjct: 78 NYTNIKGQPARLMWSHRDPSLRKSGAG---------NIFVKNLDKSIDNKALFDTFSMFG 128
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ DE GKSK +GF+ + ++A++AI ++NG + + +V F
Sbjct: 129 NILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGIQLGSKNVYVGH---------F 179
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD---KHIGFIEFI 272
K + ++V N P ++ + +ELF+ +G ITS + +D + FI +
Sbjct: 180 IKKSERATNDTKFTNLYVKNFPDSVTETHLKELFSPYGEITSMIVKTDNKNRKFCFINYA 239
Query: 273 MPKHATHAVSTMNG 286
+ A +A+ +NG
Sbjct: 240 DSESAKNAMENLNG 253
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 48/75 (64%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMN 192
+++KNL + +D++ LK F +G I K++RD+ +SKGFGF+ F + A KA+ EM+
Sbjct: 451 LYIKNLDDAIDDQTLKELFEPYGTITSAKVMRDDKEQSKGFGFVCFALQEEANKAVTEMH 510
Query: 193 GRMIQHNSTFVSLAE 207
++I +V LAE
Sbjct: 511 LKIINGKPLYVGLAE 525
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 48/83 (57%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L++ NL+ ++D+Q L F+ +GT+ +V R+ ++S+GF + F EA KA EM+
Sbjct: 451 LYIKNLDDAIDDQTLKELFEPYGTITSAKVMRDDKEQSKGFGFVCFALQEEANKAVTEMH 510
Query: 97 GHLIGSKPVIITFVELKPGQRSK 119
+I KP+ + E + + S+
Sbjct: 511 LKIINGKPLYVGLAEKREQRLSR 533
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 5/74 (6%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMN 285
+++ NL I++ +ELF +GTITS+ ++ D K GF+ F + + A AV+ M+
Sbjct: 451 LYIKNLDDAIDDQTLKELFEPYGTITSAKVMRDDKEQSKGFGFVCFALQEEANKAVTEMH 510
Query: 286 GHVFKSKPLKVTLS 299
+ KPL V L+
Sbjct: 511 LKIINGKPLYVGLA 524
>gi|301120388|ref|XP_002907921.1| polyadenylate-binding protein 1-B [Phytophthora infestans T30-4]
gi|262102952|gb|EEY61004.1| polyadenylate-binding protein 1-B [Phytophthora infestans T30-4]
Length = 640
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 82/289 (28%), Positives = 136/289 (47%), Gaps = 36/289 (12%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVA-RNKNDESRGFAIIVFNTPAEAKKARVEM 95
+ V NL+ S+DN+AL + F FG + +VA + S+G+ + + T A +A ++
Sbjct: 135 IFVKNLDTSIDNKALYDTFSLFGNILSCKVAIEHTTGNSKGYGYVHYETAEAATEAIAKI 194
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDK-----VFVKNLVETVDEEELKSH 150
NG LI V + GQ K +Q + D +VKN+ + +L
Sbjct: 195 NGMLIAGTEVFV-------GQFQK------RQDRPDADDWTNCYVKNIPTQWTDADLLKE 241
Query: 151 FIKFGNIIEVKIVRDENG--KSKGFGFIQFFSYKAAEKAIIEMNGRMIQ-----HNSTFV 203
F FG ++ +++D ++GFGF+ + AA KA+ +NG+ +V
Sbjct: 242 FEPFGKVLSAVVMKDNANPDHNRGFGFVNYEESDAAHKAVDALNGKSYPAGEGLDTEMYV 301
Query: 204 SLAEIVPGKKVFPKVKPPLLQPARKNK-----IFVANLPSNINNSEFEELFARFGTITSS 258
A+ ++ + K L+ R NK ++V NL +++ E E FA GTITSS
Sbjct: 302 GKAQKRSERERELRNKFEQLKMERINKYQGVNLYVKNLDDQLSDDELREAFAECGTITSS 361
Query: 259 SLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
++ D + GF+ F P+ A AV+ MNG + KP+ V L+ K
Sbjct: 362 RVMRDPNGNSRGFGFVCFSTPEEANKAVAEMNGKLISGKPVYVALAQRK 410
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 69/264 (26%), Positives = 120/264 (45%), Gaps = 28/264 (10%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V ++ P V L F G + +RV R+ S G+A + F+ A+A++A M
Sbjct: 47 LYVGDIHPDVTEALLFEIFNAVGPVASIRVCRDAVTRRSLGYAYVNFHNVADAERALDTM 106
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N I P I + + P R VG +FVKNL ++D + L F FG
Sbjct: 107 NFTSIKGVPCRIMWSQRDPSLRKSGVG---------NIFVKNLDTSIDNKALYDTFSLFG 157
Query: 156 NIIEVKI-VRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKV 214
NI+ K+ + G SKG+G++ + + +AA +AI ++NG +I FV + ++
Sbjct: 158 NILSCKVAIEHTTGNSKGYGYVHYETAEAATEAIAKINGMLIAGTEVFVGQFQ---KRQD 214
Query: 215 FPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-------KHIG 267
P +V N+P+ +++ + F FG + S+ ++ D + G
Sbjct: 215 RPDAD-------DWTNCYVKNIPTQWTDADLLKEFEPFGKVLSAVVMKDNANPDHNRGFG 267
Query: 268 FIEFIMPKHATHAVSTMNGHVFKS 291
F+ + A AV +NG + +
Sbjct: 268 FVNYEESDAAHKAVDALNGKSYPA 291
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 50/88 (56%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L+V NL+ + + L F + GT+ RV R+ N SRGF + F+TP EA KA
Sbjct: 329 YQGVNLYVKNLDDQLSDDELREAFAECGTITSSRVMRDPNGNSRGFGFVCFSTPEEANKA 388
Query: 92 RVEMNGHLIGSKPVIITFVELKPGQRSK 119
EMNG LI KPV + + K +R++
Sbjct: 389 VAEMNGKLISGKPVYVALAQRKEVRRAQ 416
>gi|326430672|gb|EGD76242.1| polyadenylate binding protein [Salpingoeca sp. ATCC 50818]
Length = 765
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 73/261 (27%), Positives = 118/261 (45%), Gaps = 26/261 (9%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L P V+ L N F G++ VRV R++ S G+ + FN +A+ A ++
Sbjct: 81 LYVGDLSPQVNETELFNLFSSIGSVMSVRVCRDQITRSSLGYGYVNFNKAEDAEAAMGQL 140
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N H + + + I VE P +R VG +F+ L L+ F +FG
Sbjct: 141 NFHDLHGRHIRIMKVERDPKKRRSGVG---------NIFISGLPADTTSVHLRDTFEQFG 191
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
I+ K V D +G+ +GFGF+ F K AE+AI E NG+ + + P K
Sbjct: 192 KILSCKAVLDHSGRCRGFGFVHFEDPKVAERAIAEANGKDAGGDRKL----RVAPFK--- 244
Query: 216 PKVKPPLLQPARK---NKIFVANLPSNINNSEFEELFARFGTITSSSLV------SDKHI 266
P+ + Q R ++V +L + + E +LF +G ITS +L +++
Sbjct: 245 PRKQREQEQEERTKNFTNVYVKSLRRDADEEELGKLFEPYGDITSKALRTYKLKDTERPY 304
Query: 267 GFIEFIMPKHATHAVSTMNGH 287
GF+ F + A V H
Sbjct: 305 GFVNFADTEAAQKCVEEGEMH 325
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 47/73 (64%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMN 192
+FVKN E V EE+L+ F + G+++ VK++RD+ G S+ FGF+ F + + AE AI + N
Sbjct: 440 LFVKNFNENVTEEDLRKFFEECGHVMSVKVMRDKEGVSRCFGFVTFATREEAESAIAKKN 499
Query: 193 GRMIQHNSTFVSL 205
+ +Q +V+
Sbjct: 500 RQPLQDRPIYVAF 512
Score = 38.9 bits (89), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 36/73 (49%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L V N +V + L F++ G + V+V R+K SR F + F T EA+ A + N
Sbjct: 440 LFVKNFNENVTEEDLRKFFEECGHVMSVKVMRDKEGVSRCFGFVTFATREEAESAIAKKN 499
Query: 97 GHLIGSKPVIITF 109
+ +P+ + F
Sbjct: 500 RQPLQDRPIYVAF 512
>gi|156103277|ref|XP_001617331.1| polyadenylate-binding protein [Plasmodium vivax Sal-1]
gi|148806205|gb|EDL47604.1| polyadenylate-binding protein, putative [Plasmodium vivax]
Length = 883
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 68/254 (26%), Positives = 121/254 (47%), Gaps = 22/254 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L V L F G + +RV R+ +S G+A + ++ A+A++A +
Sbjct: 18 LYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALDTL 77
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N I +P + + P R G +FVKNL +++D + L F FG
Sbjct: 78 NYTNIKGQPARLMWSHRDPSLRKSGAG---------NIFVKNLDKSIDNKALFDTFSMFG 128
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ DE GKSK +GF+ + ++A++AI ++NG + + +V F
Sbjct: 129 NILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGIQLGSKNVYVGH---------F 179
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD---KHIGFIEFI 272
K + ++V N P ++ + ++LF+ FG ITS + +D + FI +
Sbjct: 180 IKKSERATNDTKFTNLYVKNFPDSVTEAHLKQLFSPFGEITSMIVKTDNKNRKFCFINYA 239
Query: 273 MPKHATHAVSTMNG 286
+ A +A+ +NG
Sbjct: 240 DSESAKNAMENLNG 253
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 48/75 (64%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMN 192
+++KNL + +D++ LK F +G I K++RD+ +SKGFGF+ F + A +A+ EM+
Sbjct: 451 LYIKNLDDAIDDQTLKELFEPYGTITSAKVMRDDKEQSKGFGFVCFALQEEANRAVTEMH 510
Query: 193 GRMIQHNSTFVSLAE 207
++I +V LAE
Sbjct: 511 LKIINGKPLYVGLAE 525
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 44/75 (58%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L++ NL+ ++D+Q L F+ +GT+ +V R+ ++S+GF + F EA +A EM+
Sbjct: 451 LYIKNLDDAIDDQTLKELFEPYGTITSAKVMRDDKEQSKGFGFVCFALQEEANRAVTEMH 510
Query: 97 GHLIGSKPVIITFVE 111
+I KP+ + E
Sbjct: 511 LKIINGKPLYVGLAE 525
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 5/74 (6%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMN 285
+++ NL I++ +ELF +GTITS+ ++ D K GF+ F + + A AV+ M+
Sbjct: 451 LYIKNLDDAIDDQTLKELFEPYGTITSAKVMRDDKEQSKGFGFVCFALQEEANRAVTEMH 510
Query: 286 GHVFKSKPLKVTLS 299
+ KPL V L+
Sbjct: 511 LKIINGKPLYVGLA 524
>gi|410076202|ref|XP_003955683.1| hypothetical protein KAFR_0B02500 [Kazachstania africana CBS 2517]
gi|372462266|emb|CCF56548.1| hypothetical protein KAFR_0B02500 [Kazachstania africana CBS 2517]
Length = 582
Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 86/309 (27%), Positives = 151/309 (48%), Gaps = 23/309 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KG++ W S + A K N ++ + NL +DN+AL + F FG +
Sbjct: 107 KGRLCRIMW----SQRDPALRKKGNGNIF------IKNLNADIDNKALYDTFSVFGNILS 156
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
++A ++N S+GF + F A AK+A +NG L+ + + + L +R +
Sbjct: 157 SKIATDENGNSKGFGFVHFEEEAAAKEAIDALNGMLLNGQEIYVA-PHLSRKERDSQL-- 213
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
E+ + V+VKN+ EEE K F K G + + + E+GK KGFGF+ + +++
Sbjct: 214 EKTRANFTNVYVKNVPLDTTEEEFKELFEKPGKTSSIVLEKGEDGKLKGFGFVNYENHED 273
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A KA+ E+N + +V A+ + K+ + + + + +F+ NL
Sbjct: 274 ALKAVEELNNTEFKGQELYVGRAQKKYERMQALKQQYEATRLEKMAKYQGVNLFIKNLDD 333
Query: 239 NINNSEFEELFARFGTITSSSLVS-----DKHIGFIEFIMPKHATHAVSTMNGHVFKSKP 293
+I++ + +E FA FGTITS+ ++ K GF+ F P+ AT A++ N + KP
Sbjct: 334 SIDDEKLKEEFAPFGTITSTKVMRTENGKSKGFGFVCFSSPEEATKAITEKNQQIVAGKP 393
Query: 294 LKVTLSGTK 302
L V ++ K
Sbjct: 394 LYVAIAQRK 402
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 82/268 (30%), Positives = 124/268 (46%), Gaps = 24/268 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L+PSV L + F G++ +RV R+ S G+A + F K A +
Sbjct: 42 LYVGDLDPSVSEALLYDIFSPIGSVTSIRVCRDAITKTSLGYAYVNFADHEAGKVAIERL 101
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N I + I + + P R K G +F+KNL +D + L F FG
Sbjct: 102 NYTPIKGRLCRIMWSQRDPALRKKGNG---------NIFIKNLNADIDNKALYDTFSVFG 152
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ KI DENG SKGFGF+ F AA++AI +NG ++ +V+ +
Sbjct: 153 NILSSKIATDENGNSKGFGFVHFEEEAAAKEAIDALNGMLLNGQEIYVA-------PHLS 205
Query: 216 PKVKPPLLQPARKN--KIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGF 268
K + L+ R N ++V N+P + EF+ELF + G +S L K GF
Sbjct: 206 RKERDSQLEKTRANFTNVYVKNVPLDTTEEEFKELFEKPGKTSSIVLEKGEDGKLKGFGF 265
Query: 269 IEFIMPKHATHAVSTMNGHVFKSKPLKV 296
+ + + A AV +N FK + L V
Sbjct: 266 VNYENHEDALKAVEELNNTEFKGQELYV 293
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 52/88 (59%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L + NL+ S+D++ L EF FGT+ +V R +N +S+GF + F++P EA KA
Sbjct: 321 YQGVNLFIKNLDDSIDDEKLKEEFAPFGTITSTKVMRTENGKSKGFGFVCFSSPEEATKA 380
Query: 92 RVEMNGHLIGSKPVIITFVELKPGQRSK 119
E N ++ KP+ + + K +RS+
Sbjct: 381 ITEKNQQIVAGKPLYVAIAQRKEVRRSQ 408
>gi|326430719|gb|EGD76289.1| polyadenylate binding protein [Salpingoeca sp. ATCC 50818]
Length = 642
Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 73/261 (27%), Positives = 117/261 (44%), Gaps = 26/261 (9%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L P V+ L N F G++ VRV R++ S G+ + FN +A+ A ++
Sbjct: 72 LYVGDLSPQVNETELFNLFSSIGSVMSVRVCRDQITRSSLGYGYVNFNKAEDAEAAMGQL 131
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N H + + + I VE P +R VG +F+ L L+ F +FG
Sbjct: 132 NFHDLHGRHIRIMKVERDPKKRRSGVG---------NIFISGLPADTTSVHLRDTFEQFG 182
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
I+ K V D +G+ +GFGF+ F K AE+AI E NG+ + + P K
Sbjct: 183 KILSCKAVLDHSGRCRGFGFVHFEDPKVAERAIAEANGKDAGGDRKL----RVAPFK--- 235
Query: 216 PKVKPPLLQPARK---NKIFVANLPSNINNSEFEELFARFGTITSSSLV------SDKHI 266
P+ + Q R ++V +L + E +LF +G ITS +L +++
Sbjct: 236 PRKQREQEQEERTKNFTNVYVKSLRRGADEEELGKLFEPYGDITSKALRTYKLKDTERPY 295
Query: 267 GFIEFIMPKHATHAVSTMNGH 287
GF+ F + A V H
Sbjct: 296 GFVNFADTEAAQKCVEEGEMH 316
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 47/73 (64%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMN 192
++VKN E V EE+L+ F + G+++ VK++RD+ G S+ FGF+ F + + AE AI + N
Sbjct: 431 LYVKNFNENVTEEDLRKFFEECGHVMSVKVMRDKEGVSRCFGFVTFATREEAESAIAKKN 490
Query: 193 GRMIQHNSTFVSL 205
+ +Q +V+
Sbjct: 491 RQPLQDRPIYVAF 503
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 37/73 (50%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L+V N +V + L F++ G + V+V R+K SR F + F T EA+ A + N
Sbjct: 431 LYVKNFNENVTEEDLRKFFEECGHVMSVKVMRDKEGVSRCFGFVTFATREEAESAIAKKN 490
Query: 97 GHLIGSKPVIITF 109
+ +P+ + F
Sbjct: 491 RQPLQDRPIYVAF 503
>gi|432114066|gb|ELK36113.1| Polyadenylate-binding protein 1 [Myotis davidii]
Length = 230
Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 91/170 (53%), Gaps = 9/170 (5%)
Query: 142 VDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNST 201
+D+E LK F KFG + VK++ DE G SKGFGF+ F ++ +KA+ E+NG+ +
Sbjct: 1 MDDERLKDLFGKFGPALSVKVMMDEGGTSKGFGFVSFKRHEDTQKAVDEVNGKELNRKQI 60
Query: 202 FVSLAEIVPGKKVFPKVKPPLLQPARKNK-----IFVANLPSNINNSEFEELFARFGTIT 256
++S A + + K + R + ++V NL I+ ++ F+ FGTIT
Sbjct: 61 YISRAHKTAEWQTELRCKFEHMNQDRATRYQGVNLYVKNLDDGIDEGCLQKEFSPFGTIT 120
Query: 257 SSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
+ + + + GF+ F P+ AT AV+ MNG + +KPL V L+ K
Sbjct: 121 GAKFMMEGGPSEGFGFVRFSSPEEATKAVTEMNGRIVATKPLCVALAQRK 170
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 88/169 (52%), Gaps = 8/169 (4%)
Query: 46 VDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPV 105
+D++ L + F KFG V+V ++ S+GF + F + +KA E+NG + K +
Sbjct: 1 MDDERLKDLFGKFGPALSVKVMMDEGGTSKGFGFVSFKRHEDTQKAVDEVNGKELNRKQI 60
Query: 106 IIT----FVELKPGQRSK---PVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
I+ E + R K +Y+ ++VKNL + +DE L+ F FG I
Sbjct: 61 YISRAHKTAEWQTELRCKFEHMNQDRATRYQGVNLYVKNLDDGIDEGCLQKEFSPFGTIT 120
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
K + E G S+GFGF++F S + A KA+ EMNGR++ V+LA+
Sbjct: 121 GAKFMM-EGGPSEGFGFVRFSSPEEATKAVTEMNGRIVATKPLCVALAQ 168
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 25 NKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNT 84
N++ Y+ L+V NL+ +D L EF FGT+ + + S GF + F++
Sbjct: 83 NQDRATRYQGVNLYVKNLDDGIDEGCLQKEFSPFGTITGAKFMM-EGGPSEGFGFVRFSS 141
Query: 85 PAEAKKARVEMNGHLIGSKPVIITFVELK 113
P EA KA EMNG ++ +KP+ + + K
Sbjct: 142 PEEATKAVTEMNGRIVATKPLCVALAQRK 170
>gi|330843410|ref|XP_003293648.1| hypothetical protein DICPUDRAFT_158538 [Dictyostelium purpureum]
gi|325076001|gb|EGC29827.1| hypothetical protein DICPUDRAFT_158538 [Dictyostelium purpureum]
Length = 735
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 80/270 (29%), Positives = 129/270 (47%), Gaps = 23/270 (8%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
V NLE +VDN L + F FG + +V K S+G+ + F T + KA +NG
Sbjct: 214 VKNLEKAVDNAMLYDVFSSFGNILSCKVEYEKGI-SKGYGYVHFETSESSGKAIERINGT 272
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYK-KDKVFVKNLVETVDEEELKSHFIKFGNI 157
L+ KP+ F E P + ++YK ++KVF +N E+V +E ++ KFG I
Sbjct: 273 LVLGKPI---FCE--------PFVAKVERYKVENKVFFRNADESVTQEMIQEELSKFGEI 321
Query: 158 IEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPK 217
+ D GKSKG G ++F + + A+K ++ + IQ N ++ + K +
Sbjct: 322 EICTLKIDSTGKSKGLGTVEFKNCEDAQK-LLAVEADSIQINGKPITFDRV---KNKIER 377
Query: 218 VKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFI 272
V L + +F++N+ +I +E F++ G I +V D K GFI F
Sbjct: 378 VT-ELRKKTTDQTLFLSNIDESIEKETIKEEFSKHGAIIGCKIVQDESGKNKGYGFITFS 436
Query: 273 MPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
A A+ +NG F +K + V+LS K
Sbjct: 437 EVSEANKALEALNGFTFGNKQITVSLSSNK 466
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 76/247 (30%), Positives = 118/247 (47%), Gaps = 38/247 (15%)
Query: 37 LHVNNLEPSVDNQALINE-FKKFG--TLRDVRVARNKND-ESRGFAIIVFNTPAEAKKAR 92
L+V +L V N+ ++NE F K G + + V R+ N S G+A + F +A++A
Sbjct: 122 LYVGDLASDV-NEVVLNELFSKVGRNAIASIHVCRDSNTYRSLGYAYVNFYNNHDAERAL 180
Query: 93 VEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFI 152
+N +I KP I + P +R VG VFVKNL + VD L F
Sbjct: 181 DTLNYSMIHGKPCRIMWSYRDPTKRKTNVG---------NVFVKNLEKAVDNAMLYDVFS 231
Query: 153 KFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGK 212
FGNI+ K V E G SKG+G++ F + +++ KAI +NG + V GK
Sbjct: 232 SFGNILSCK-VEYEKGISKGYGYVHFETSESSGKAIERINGTL-------------VLGK 277
Query: 213 KVFPKVKPPLLQPAR---KNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----K 264
+F +P + + R +NK+F N ++ +E ++FG I +L D K
Sbjct: 278 PIF--CEPFVAKVERYKVENKVFFRNADESVTQEMIQEELSKFGEIEICTLKIDSTGKSK 335
Query: 265 HIGFIEF 271
+G +EF
Sbjct: 336 GLGTVEF 342
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 90/174 (51%), Gaps = 5/174 (2%)
Query: 34 ENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA-R 92
EN++ N + SV + + E KFG + + + +S+G + F +A+K
Sbjct: 294 ENKVFFRNADESVTQEMIQEELSKFGEIEICTLKIDSTGKSKGLGTVEFKNCEDAQKLLA 353
Query: 93 VEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFI 152
VE + I KP ITF +K + + V K+ +F+ N+ E++++E +K F
Sbjct: 354 VEADSIQINGKP--ITFDRVK--NKIERVTELRKKTTDQTLFLSNIDESIEKETIKEEFS 409
Query: 153 KFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLA 206
K G II KIV+DE+GK+KG+GFI F A KA+ +NG + VSL+
Sbjct: 410 KHGAIIGCKIVQDESGKNKGYGFITFSEVSEANKALEALNGFTFGNKQITVSLS 463
Score = 45.1 bits (105), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 46/80 (57%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L ++N++ S++ + + EF K G + ++ ++++ +++G+ I F+ +EA KA +N
Sbjct: 390 LFLSNIDESIEKETIKEEFSKHGAIIGCKIVQDESGKNKGYGFITFSEVSEANKALEALN 449
Query: 97 GHLIGSKPVIITFVELKPGQ 116
G G+K + ++ K Q
Sbjct: 450 GFTFGNKQITVSLSSNKEQQ 469
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 55/133 (41%), Gaps = 19/133 (14%)
Query: 220 PPLLQPARKNKIFVANLPSNINNSEFEELFARFG--TITSSSLVSDKHI------GFIEF 271
PP QP++ ++V +L S++N ELF++ G I S + D + ++ F
Sbjct: 111 PPNYQPSQLTSLYVGDLASDVNEVVLNELFSKVGRNAIASIHVCRDSNTYRSLGYAYVNF 170
Query: 272 IMPKHATHAVSTMNGHVFKSKPLKVTLSGTKP--------GVSITNPTKAPKKPAYID-- 321
A A+ T+N + KP ++ S P V + N KA D
Sbjct: 171 YNNHDAERALDTLNYSMIHGKPCRIMWSYRDPTKRKTNVGNVFVKNLEKAVDNAMLYDVF 230
Query: 322 -EVKNVIGIKVQY 333
N++ KV+Y
Sbjct: 231 SSFGNILSCKVEY 243
>gi|419961|pir||JN0573 polyadenylate-binding protein - fruit fly (Drosophila melanogaster)
Length = 598
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 82/262 (31%), Positives = 132/262 (50%), Gaps = 22/262 (8%)
Query: 48 NQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVII 107
N+A+ + F FG + +VA ++ S+G+ + +T A + ++NG L+ K V +
Sbjct: 97 NKAIYDTFSAFGNILSCKVATDEKGNSKGYGFV--HTEEAANTSIDKVNGMLLNGKKVYV 154
Query: 108 -TFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE 166
F+ K EEK V+VKN E D+E+LK F +G I K++ E
Sbjct: 155 GKFIPRKE--------QEEKAKLFTNVYVKNFTEDFDDEKLKEFFEPYGKI--TKVMSKE 204
Query: 167 NGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPA 226
+GKSKGFGF+ F + +AAE A+ +NG+ + S +V+ A+ ++ K K L+
Sbjct: 205 DGKSKGFGFVAFETTEAAEAAVQALNGKG-EGKSLYVARAQKKAERQQELKRKFEELKQK 263
Query: 227 RKN---KIFVANLPSNINNSEFEELFARFGTITSSSLVSD---KHIGFIEFIMPKHATHA 280
R ++V NL I++ F+ +G ITS+ + + K GF+ F AT A
Sbjct: 264 RHEFGVNLYVKNLDDTIDDDRLRIAFSPYGNITSAKVDEEGRSKGFGFVCFNPESEATCA 323
Query: 281 VSTMNGHVFKSKPLKVTLSGTK 302
V+ +NG V S L V L+ K
Sbjct: 324 VTELNGRVVGS--LYVALAQRK 343
Score = 94.0 bits (232), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 76/254 (29%), Positives = 123/254 (48%), Gaps = 30/254 (11%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L V+ L ++F G + +RV R+ S G+A + F PA+A++A M
Sbjct: 4 LYVGDLPQDVNESGLFDKFSSAGPV--IRVCRDVITRRSLGYAYVNFQQPADAERALDTM 61
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N L+ +KP+ I + + P R VG VF+KNL + + F FG
Sbjct: 62 N--LVRNKPIRIMWSQRDPSLRRSGVG---------NVFIKNLDRA--NKAIYDTFSAFG 108
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ DE G SKG+GF+ + +AA +I ++NG ++ N V + + +P K+
Sbjct: 109 NILSCKVATDEKGNSKGYGFVH--TEEAANTSIDKVNGMLL--NGKKVYVGKFIPRKEQE 164
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD---KHIGFIEFI 272
K K L ++V N + ++ + +E F +G IT D K GF+ F
Sbjct: 165 EKAK--LF-----TNVYVKNFTEDFDDEKLKEFFEPYGKITKVMSKEDGKSKGFGFVAFE 217
Query: 273 MPKHATHAVSTMNG 286
+ A AV +NG
Sbjct: 218 TTEAAEAAVQALNG 231
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 111/220 (50%), Gaps = 25/220 (11%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
++V N D++ L F+ +G + +V ++ +S+GF + F T A+ A +N
Sbjct: 173 VYVKNFTEDFDDEKLKEFFEPYGKI--TKVMSKEDGKSKGFGFVAFETTEAAEAAVQALN 230
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDK------VFVKNLVETVDEEELKSH 150
G G K + + + K +R + + + ++ K+ + ++VKNL +T+D++ L+
Sbjct: 231 GKGEG-KSLYVARAQ-KKAERQQELKRKFEELKQKRHEFGVNLYVKNLDDTIDDDRLRIA 288
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVP 210
F +GNI K+ DE G+SKGFGF+ F A A+ E+NGR++ S +V+LA+
Sbjct: 289 FSPYGNITSAKV--DEEGRSKGFGFVCFNPESEATCAVTELNGRVV--GSLYVALAQRKE 344
Query: 211 GKK-----------VFPKVKPPLLQPARKNKIFVANLPSN 239
+K +++ QP + FV LPSN
Sbjct: 345 ERKADLASQYMRHMTGMRMQQLGQQPNAASGFFVPTLPSN 384
>gi|323448756|gb|EGB04650.1| hypothetical protein AURANDRAFT_55048 [Aureococcus anophagefferens]
Length = 604
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 73/259 (28%), Positives = 114/259 (44%), Gaps = 23/259 (8%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
+ L+V +L L F G + +RV R+ S G+A + F+ ++A++
Sbjct: 9 FHSASLYVGDLATDASEGLLFEIFNTVGPVASIRVCRDAVTRRSLGYAYVNFHNVSDAER 68
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN LI SKP I + + P R VG VFVKNL ++D + L
Sbjct: 69 ALDTMNYTLIKSKPCRIMWSQRDPTLRKSGVG---------NVFVKNLDASIDHKALFDT 119
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVP 210
F FGNI+ K+ DE G+S+G+G++ + S AA AI ++N I +V
Sbjct: 120 FSLFGNILSCKVATDEAGRSQGYGYVHYESEDAATDAINKINSMTICDKEVYVGH----- 174
Query: 211 GKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSS---SLVSDKHIG 267
F + Q N ++V N P++ + + F FG ITS + G
Sbjct: 175 ----FVRRTERSGQSDWTN-LYVKNFPADWDEETLRKAFETFGAITSCKAAAAADGSAFG 229
Query: 268 FIEFIMPKHATHAVSTMNG 286
++ F A A+ +NG
Sbjct: 230 WVNFEAHDAAVAAMDALNG 248
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 80/296 (27%), Positives = 132/296 (44%), Gaps = 58/296 (19%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
V NL+ S+D++AL + F FG + +VA ++ S+G+ + + + A A ++N
Sbjct: 104 VKNLDASIDHKALFDTFSLFGNILSCKVATDEAGRSQGYGYVHYESEDAATDAINKINSM 163
Query: 99 LIGSKPVIIT-FVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNI 157
I K V + FV +R++ G Q ++VKN DEE L+ F FG I
Sbjct: 164 TICDKEVYVGHFV-----RRTERSG----QSDWTNLYVKNFPADWDEETLRKAFETFGAI 214
Query: 158 IEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKK--VF 215
K +G + FG++ F ++ AA A+ +NG +AE+ PG+
Sbjct: 215 TSCKAAAAADGSA--FGWVNFEAHDAAVAAMDALNG-----------IAEL-PGQAGGAP 260
Query: 216 PKVKPPLLQPARKNKI--------------------------FVANLPSNINNSEFEELF 249
+K PL + KI FV NL +++ + E F
Sbjct: 261 TTLKAPLFVGRAQKKIERERELKAKFDAAKIERIKKYQGVNLFVKNLDDGLDDDQLRENF 320
Query: 250 ARFGTITSSSLV------SDKHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299
A +GTITS+ ++ + + GF+ F P+ A AV+ MN + KP+ V L+
Sbjct: 321 AEYGTITSARVMREPATGTSRGFGFVCFSSPEEAAKAVTEMNNKLVLGKPIFVALA 376
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 89/191 (46%), Gaps = 23/191 (12%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L+V N D + L F+ FG + + A + + F + F A A +N
Sbjct: 190 LYVKNFPADWDEETLRKAFETFGAITSCKAAAAADGSA--FGWVNFEAHDAAVAAMDALN 247
Query: 97 G-----HLIGSKPVIITFVELKPGQRSKPVGPEE--------------KQYKKDKVFVKN 137
G G P + L G+ K + E K+Y+ +FVKN
Sbjct: 248 GIAELPGQAGGAPTTLK-APLFVGRAQKKIERERELKAKFDAAKIERIKKYQGVNLFVKN 306
Query: 138 LVETVDEEELKSHFIKFGNIIEVKIVRD-ENGKSKGFGFIQFFSYKAAEKAIIEMNGRMI 196
L + +D+++L+ +F ++G I +++R+ G S+GFGF+ F S + A KA+ EMN +++
Sbjct: 307 LDDGLDDDQLRENFAEYGTITSARVMREPATGTSRGFGFVCFSSPEEAAKAVTEMNNKLV 366
Query: 197 QHNSTFVSLAE 207
FV+LA+
Sbjct: 367 LGKPIFVALAQ 377
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
Query: 27 ENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTP 85
E K Y+ L V NL+ +D+ L F ++GT+ RV R SRGF + F++P
Sbjct: 292 ERIKKYQGVNLFVKNLDDGLDDDQLRENFAEYGTITSARVMREPATGTSRGFGFVCFSSP 351
Query: 86 AEAKKARVEMNGHLIGSKPVIITFVELKPGQRSK 119
EA KA EMN L+ KP+ + + K +R++
Sbjct: 352 EEAAKAVTEMNNKLVLGKPIFVALAQRKEVRRAQ 385
>gi|384247365|gb|EIE20852.1| hypothetical protein COCSUDRAFT_4708, partial [Coccomyxa
subellipsoidea C-169]
Length = 264
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 76/269 (28%), Positives = 119/269 (44%), Gaps = 18/269 (6%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V NL P V+ L + F GT+ +VR+ +++ S G A + F A A +
Sbjct: 7 LYVGNLHPYVNEAVLQDIFSTLGTVSEVRIVKDRATGNSAGSAFVKFEDHQAAAIALKTI 66
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
NG ++ +K V I + Q+ K E +FV NL V + L F G
Sbjct: 67 NGRILYNKEVRIQWAF----QKEKT----ENTASHSHIFVGNLSGDVADPVLLQAFQHLG 118
Query: 156 NIIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLA----EIVP 210
+ +++ D + G+SKGFGF+ F + +AAEKA+ EM+G + A E V
Sbjct: 119 ECSDARVMWDHSTGRSKGFGFVSFRTKEAAEKALAEMDGAQVGQWKIRCGWAHHKTEAVT 178
Query: 211 GKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKHIGFIE 270
G + + PA N ++V NLP+ + + F +G IT GF+
Sbjct: 179 GLDIDTVDRA---DPANTN-VYVGNLPTEVMEEDLRAAFGAYGEITGLKPCHKGGYGFVT 234
Query: 271 FIMPKHATHAVSTMNGHVFKSKPLKVTLS 299
+ A A+ MNG K K +K +
Sbjct: 235 YRDHSAAVQAIVGMNGKELKGKMVKCSWG 263
>gi|156086682|ref|XP_001610750.1| polyadenylate binding protein [Babesia bovis T2Bo]
gi|154798003|gb|EDO07182.1| polyadenylate binding protein, putative [Babesia bovis]
Length = 585
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 75/267 (28%), Positives = 124/267 (46%), Gaps = 23/267 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V NL P V L F G + +RV R+ +S G+A + + +A+ A +
Sbjct: 38 LYVGNLLPEVTEAMLYEVFNGIGPVASIRVCRDSLTRKSLGYAYVNYYNFQDAEAALECL 97
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N I +P I + E P R G +FVKNL + +D + L F FG
Sbjct: 98 NYIEIKGQPARIMWSERDPSLRKSGTG---------NIFVKNLDKAIDTKALYDTFSHFG 148
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
I+ K+ D G SKG+GF+ + + ++A++AI ++NG +I ++ VS+A + +
Sbjct: 149 TILSCKVAIDSLGNSKGYGFVHYTTEESAKEAIEKVNGMLIGNSQ--VSVAPFLRRNERT 206
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD---KHIGFIEFI 272
V ++V N P + + F+++G ITS L SD + F+ F+
Sbjct: 207 STVGDVF------TNLYVRNFPDTWTEDDLHQTFSKYGEITSLLLKSDDKGRRFAFVNFV 260
Query: 273 MPKHATHAVSTMNGHVFKS--KPLKVT 297
A A+ NG F+S +P+ V
Sbjct: 261 DTNMAKAAMEGENGVKFESVEEPMMVC 287
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 80/308 (25%), Positives = 146/308 (47%), Gaps = 30/308 (9%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KG+ W E D R + N + V NL+ ++D +AL + F FGT+
Sbjct: 103 KGQPARIMWSE---RDPSLRKSGTGN-------IFVKNLDKAIDTKALYDTFSHFGTILS 152
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+VA + S+G+ + + T AK+A ++NG LIG+ V + L+ +R+ VG
Sbjct: 153 CKVAIDSLGNSKGYGFVHYTTEESAKEAIEKVNGMLIGNSQVSVAPF-LRRNERTSTVGD 211
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
++V+N +T E++L F K+G I + + D+ G+ F F+ F
Sbjct: 212 VFT-----NLYVRNFPDTWTEDDLHQTFSKYGEITSLLLKSDDKGRR--FAFVNFVDTNM 264
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNK-------IFVANL 236
A+ A+ NG + + + + + + + +K A+ + +++ NL
Sbjct: 265 AKAAMEGENGVKFESVEEPMMVCQHMDKARRYAMLKAQYDSNAQDQRNKFMGVNLYIKNL 324
Query: 237 PSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKS 291
+ ++ +LF ++GT+TSS ++ D + GF+ F P AT AV+ M+ + K+
Sbjct: 325 DDDFDDDGLRDLFKQYGTVTSSKVMRDHNGVSRGFGFVCFSRPDEATKAVAGMHLKLVKN 384
Query: 292 KPLKVTLS 299
KPL V L+
Sbjct: 385 KPLYVGLA 392
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 83/189 (43%), Gaps = 22/189 (11%)
Query: 120 PVG-----PEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGF 173
PVG P + ++V NL+ V E L F G + +++ RD KS G+
Sbjct: 20 PVGNYQGQPARSSFNSASLYVGNLLPEVTEAMLYEVFNGIGPVASIRVCRDSLTRKSLGY 79
Query: 174 GFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFV 233
++ +++++ AE A+ +N I+ + +E + P L+ + IFV
Sbjct: 80 AYVNYYNFQDAEAALECLNYIEIKGQPARIMWSE-----------RDPSLRKSGTGNIFV 128
Query: 234 ANLPSNINNSEFEELFARFGTITSS-----SLVSDKHIGFIEFIMPKHATHAVSTMNGHV 288
NL I+ + F+ FGTI S SL + K GF+ + + A A+ +NG +
Sbjct: 129 KNLDKAIDTKALYDTFSHFGTILSCKVAIDSLGNSKGYGFVHYTTEESAKEAIEKVNGML 188
Query: 289 FKSKPLKVT 297
+ + V
Sbjct: 189 IGNSQVSVA 197
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 87/181 (48%), Gaps = 13/181 (7%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L+V N + L F K+G + + + +D+ R FA + F AK A N
Sbjct: 216 LYVRNFPDTWTEDDLHQTFSKYGEITSLLL--KSDDKGRRFAFVNFVDTNMAKAAMEGEN 273
Query: 97 GHLIGS--KPVIIT--------FVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEE 146
G S +P+++ + LK Q + ++ +++KNL + D++
Sbjct: 274 GVKFESVEEPMMVCQHMDKARRYAMLK-AQYDSNAQDQRNKFMGVNLYIKNLDDDFDDDG 332
Query: 147 LKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLA 206
L+ F ++G + K++RD NG S+GFGF+ F A KA+ M+ +++++ +V LA
Sbjct: 333 LRDLFKQYGTVTSSKVMRDHNGVSRGFGFVCFSRPDEATKAVAGMHLKLVKNKPLYVGLA 392
Query: 207 E 207
E
Sbjct: 393 E 393
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 59/113 (52%), Gaps = 9/113 (7%)
Query: 7 ILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRV 66
+L+A +D D + NK N L++ NL+ D+ L + FK++GT+ +V
Sbjct: 298 MLKAQYDSNAQD--------QRNKFMGVN-LYIKNLDDDFDDDGLRDLFKQYGTVTSSKV 348
Query: 67 ARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSK 119
R+ N SRGF + F+ P EA KA M+ L+ +KP+ + E + + S+
Sbjct: 349 MRDHNGVSRGFGFVCFSRPDEATKAVAGMHLKLVKNKPLYVGLAEKREQRASR 401
>gi|221061487|ref|XP_002262313.1| polyadenylate-binding protein [Plasmodium knowlesi strain H]
gi|193811463|emb|CAQ42191.1| polyadenylate-binding protein, putative [Plasmodium knowlesi strain
H]
Length = 874
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/254 (26%), Positives = 121/254 (47%), Gaps = 22/254 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L V L F G + +RV R+ +S G+A + ++ A+A++A +
Sbjct: 18 LYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALDTL 77
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N I +P + + P R G +FVKNL +++D + L F FG
Sbjct: 78 NYTNIKGQPARLMWSHRDPSLRKSGAG---------NIFVKNLDKSIDNKALFDTFSMFG 128
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ DE GKSK +GF+ + ++A++AI ++NG + + +V F
Sbjct: 129 NILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGIQLGSKNVYVGH---------F 179
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD---KHIGFIEFI 272
K + ++V N P ++ + ++LF+ +G ITS + +D + FI +
Sbjct: 180 IKRSERATNDTKFTNLYVKNFPDSVTEAHLKQLFSPYGEITSMIVKTDNKNRKFCFINYA 239
Query: 273 MPKHATHAVSTMNG 286
+ A +A+ +NG
Sbjct: 240 DSESAKNAMENLNG 253
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 48/75 (64%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMN 192
+++KNL + +D++ LK F +G I K++RD+ +SKGFGF+ F + A KA+ EM+
Sbjct: 442 LYIKNLDDAIDDQTLKELFEPYGTITSAKVMRDDKEQSKGFGFVCFAQQEEANKAVTEMH 501
Query: 193 GRMIQHNSTFVSLAE 207
++I +V LAE
Sbjct: 502 LKIINGKPLYVGLAE 516
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 48/83 (57%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L++ NL+ ++D+Q L F+ +GT+ +V R+ ++S+GF + F EA KA EM+
Sbjct: 442 LYIKNLDDAIDDQTLKELFEPYGTITSAKVMRDDKEQSKGFGFVCFAQQEEANKAVTEMH 501
Query: 97 GHLIGSKPVIITFVELKPGQRSK 119
+I KP+ + E + + S+
Sbjct: 502 LKIINGKPLYVGLAEKREQRLSR 524
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 5/74 (6%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMN 285
+++ NL I++ +ELF +GTITS+ ++ D K GF+ F + A AV+ M+
Sbjct: 442 LYIKNLDDAIDDQTLKELFEPYGTITSAKVMRDDKEQSKGFGFVCFAQQEEANKAVTEMH 501
Query: 286 GHVFKSKPLKVTLS 299
+ KPL V L+
Sbjct: 502 LKIINGKPLYVGLA 515
>gi|403372370|gb|EJY86082.1| RNA-binding proteins (RRM domain) [Oxytricha trifallax]
Length = 695
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 85/282 (30%), Positives = 135/282 (47%), Gaps = 29/282 (10%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L V NL+ V Q L + FK+FG ++ +++ + SRG+A I F + EA+KA MN
Sbjct: 173 LLVKNLDKEVTQQELFDSFKQFGDIQSLKLETYPDGSSRGYAFIQFQSEEEAEKALNAMN 232
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
I K + I E K R P +Q K + +FVKNL + D+++LK F KFG
Sbjct: 233 QAEIKGKKIEINRHE-KKATRENP-----QQTKFNNLFVKNLPKGTDDDQLKGLFGKFGE 286
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFP 216
I V + RDE G K +G++ F AE A++EMN + I + F+ + + + K P
Sbjct: 287 IESVTVQRDEQGNLKDYGYVCFKEPDHAEAAVLEMNKKQI--DDQFLIVNQHISKKDNEP 344
Query: 217 KVKPPLLQPARKN-------KIFVANLPSNINNSEFEELFA-RFGTITSSSL------VS 262
+ L P +N I++ +P+ + E + F+ + I S L +
Sbjct: 345 -TQGSRLNPITQNLNKTFNSNIYIKFIPNEVTEEELRKTFSMKDANIVSIKLTKFVKKIE 403
Query: 263 DKHI-----GFIEFIMPKHATHAVSTMN-GHVFKSKPLKVTL 298
D+ + +I + A A+ T + VF +KPL V L
Sbjct: 404 DQEVQPYQFAYILYDTVLGAQKAIQTFDQSTVFGNKPLLVEL 445
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 65/219 (29%), Positives = 103/219 (47%), Gaps = 32/219 (14%)
Query: 76 GFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITF----VELKPGQRSKPVGPEEKQYKKD 131
G+ + FN+ EA + +MN +++ + + I + P K
Sbjct: 127 GYGYLQFNSKEEADRCLQDMNNYVLNGQALRIVHSVSKFDYNP---------------KA 171
Query: 132 KVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEM 191
+ VKNL + V ++EL F +FG+I +K+ +G S+G+ FIQF S + AEKA+ M
Sbjct: 172 NLLVKNLDKEVTQQELFDSFKQFGDIQSLKLETYPDGSSRGYAFIQFQSEEEAEKALNAM 231
Query: 192 NGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFAR 251
N I+ EI +K + P Q + N +FV NLP ++ + + LF +
Sbjct: 232 NQAEIKGKKI-----EINRHEKKATRENP---QQTKFNNLFVKNLPKGTDDDQLKGLFGK 283
Query: 252 FGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMN 285
FG I S ++ D K G++ F P HA AV MN
Sbjct: 284 FGEIESVTVQRDEQGNLKDYGYVCFKEPDHAEAAVLEMN 322
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 82/179 (45%), Gaps = 13/179 (7%)
Query: 23 RSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVF 82
++ +EN + K N L V NL D+ L F KFG + V V R++ + + + F
Sbjct: 249 KATRENPQQTKFNNLFVKNLPKGTDDDQLKGLFGKFGEIESVTVQRDEQGNLKDYGYVCF 308
Query: 83 NTPAEAKKARVEMNGHLIGSKPVIITFV------ELKPGQRSKPVGPEEKQYKKDKVFVK 136
P A+ A +EMN I + +I+ E G R P+ + +++K
Sbjct: 309 KEPDHAEAAVLEMNKKQIDDQFLIVNQHISKKDNEPTQGSRLNPITQNLNKTFNSNIYIK 368
Query: 137 NLVETVDEEELKSHF-IKFGNIIEVKI------VRDENGKSKGFGFIQFFSYKAAEKAI 188
+ V EEEL+ F +K NI+ +K+ + D+ + F +I + + A+KAI
Sbjct: 369 FIPNEVTEEELRKTFSMKDANIVSIKLTKFVKKIEDQEVQPYQFAYILYDTVLGAQKAI 427
>gi|213515090|ref|NP_001135023.1| cytotoxic granule-associated RNA binding protein 1 [Salmo salar]
gi|209738084|gb|ACI69911.1| Nucleolysin TIA-1 [Salmo salar]
Length = 409
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 74/302 (24%), Positives = 130/302 (43%), Gaps = 14/302 (4%)
Query: 37 LHVNNLEPSVDNQALINEFKKF--GTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVE 94
LH+ N+ +VD L++ ++F G ++ + N+ + + F A A
Sbjct: 23 LHIGNIHSAVDENVLVSILQQFFPGQGFQCKLFPDPNNSPDLYCFMTFADVNTATSALSI 82
Query: 95 MNGHLIGSKPVIITFVELKPGQ--RSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFI 152
+NG + K + +++ GQ +S+ G ++V +L D+ L F
Sbjct: 83 LNGREVMGKKLKVSWASGGAGQFKQSQISG------TTHSIYVGDLPHECDDNMLAQAFR 136
Query: 153 KFGNIIEVKIVRD-ENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPG 211
FG ++ ++VRD E+G SKGFGFI + AE+AI +M+G I S VS A
Sbjct: 137 PFGEVLSSRVVRDPESGLSKGFGFIVYRHQYEAEEAIQKMHGGTISSKSVKVSWATRSKA 196
Query: 212 KKVFPKVKPPLL---QPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKHIGF 268
P++ + A ++V NLP ++ F +G + + + DKH F
Sbjct: 197 TTSVPQLNYNDVYQQSGAHNTTLYVGNLPESMKEQFLISFFEPYGAVLDTKIFHDKHFAF 256
Query: 269 IEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKPGVSITNPTKAPKKPAYIDEVKNVIG 328
I+ + A ++ NG +KV S P + P+ +P Y+ V + G
Sbjct: 257 IKMDTHEAAATSIVKCNGQPVDGCVMKVWWSRDNPNLQGNMPSNPAPQPTYMGSVPSSYG 316
Query: 329 IK 330
+
Sbjct: 317 VS 318
>gi|324507975|gb|ADY43373.1| Nucleolysin TIAR [Ascaris suum]
Length = 290
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 102/199 (51%), Gaps = 27/199 (13%)
Query: 30 KVYKENELHV--NNLEPSVDNQALINEFKKFGTLRDVRVARNKND-ESRGFAIIVFNTPA 86
KV HV +L P VDN+AL + F FG + D +V R+ +S+G+ + +
Sbjct: 24 KVDTSKHFHVFIGDLSPEVDNKALKDAFAPFGEVSDAKVIRDSTTLKSKGYGFVSYPKRE 83
Query: 87 EAKKARVEMNGHLIGSKPVIITFVELKP----GQRSKP----------VGPEEKQYKKDK 132
EA++A +MNG +G + + + KP GQ+SKP GP+
Sbjct: 84 EAERAIEQMNGQWLGRRTIRTNWATRKPTGTDGQQSKPELSYDDVFNQTGPDNT-----S 138
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMN 192
V++ N+ ++V++E+L++ F KFG I+EV+I K++GF F++F +A AI++MN
Sbjct: 139 VYIGNVNQSVNDEDLRAAFDKFGRIVEVRIF-----KTQGFAFVRFDKKDSACNAIVKMN 193
Query: 193 GRMIQHNSTFVSLAEIVPG 211
G I + S G
Sbjct: 194 GTEIGGQTVKCSWGRTPEG 212
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 84/180 (46%), Gaps = 8/180 (4%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENG-KSKGFGFIQFFSYKAAEKAIIEM 191
VF+ +L VD + LK F FG + + K++RD KSKG+GF+ + + AE+AI +M
Sbjct: 33 VFIGDLSPEVDNKALKDAFAPFGEVSDAKVIRDSTTLKSKGYGFVSYPKREEAERAIEQM 92
Query: 192 NGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNK-------IFVANLPSNINNSE 244
NG+ + + + A P + KP L N+ +++ N+ ++N+ +
Sbjct: 93 NGQWLGRRTIRTNWATRKPTGTDGQQSKPELSYDDVFNQTGPDNTSVYIGNVNQSVNDED 152
Query: 245 FEELFARFGTITSSSLVSDKHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKPG 304
F +FG I + + F+ F A +A+ MNG + +K + T G
Sbjct: 153 LRAAFDKFGRIVEVRIFKTQGFAFVRFDKKDSACNAIVKMNGTEIGGQTVKCSWGRTPEG 212
>gi|84998214|ref|XP_953828.1| polyadenylate (poly(A)) binding protein [Theileria annulata]
gi|65304825|emb|CAI73150.1| polyadenylate (poly(A)) binding protein, putative [Theileria
annulata]
Length = 664
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 71/267 (26%), Positives = 125/267 (46%), Gaps = 33/267 (12%)
Query: 28 NNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPA 86
+ +V+ L+V +L+P V L F G + +RV R+ +S G+A + + +
Sbjct: 20 DTQVFSSASLYVGDLKPDVTEAVLYEVFNTVGPVASIRVCRDSVTRKSLGYAYVNYYSTQ 79
Query: 87 EAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEE 146
+A+ A +N I P I + P R G +FVKNL +++D +
Sbjct: 80 DAEAALESLNYIEIKGHPTRIMWSNRDPSLRRSGAG---------NIFVKNLDKSIDTKS 130
Query: 147 LKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLA 206
L F FG I+ K+ D +G SK +GF+ + + ++A +AI ++NG +I
Sbjct: 131 LYDTFSHFGPILSCKVAVDASGASKRYGFVHYENEESAREAIEKVNGMLIG--------- 181
Query: 207 EIVPGKKVFPKVKPPLLQPARKNK-----IFVANLPSNINNSEFEELFARFGTITSSSLV 261
GK+V +V P L + R+ + ++V N P++ N + ++G ITS L
Sbjct: 182 ----GKRV--EVAPFLRKQDREGEEVFTNLYVRNFPADWNEEALRQFLEKYGEITSMMLK 235
Query: 262 SD---KHIGFIEFIMPKHATHAVSTMN 285
D + F+ + P+ A V+T+N
Sbjct: 236 EDSKGRRFAFVNYKEPEVAKEVVNTLN 262
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 73/281 (25%), Positives = 132/281 (46%), Gaps = 34/281 (12%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ V NL+ S+D ++L + F FG + +VA + + S+ + + + A++A ++N
Sbjct: 117 IFVKNLDKSIDTKSLYDTFSHFGPILSCKVAVDASGASKRYGFVHYENEESAREAIEKVN 176
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G LIG K VE+ P R + E + ++V+N +EE L+ K+G
Sbjct: 177 GMLIGGK-----RVEVAPFLRKQD---REGEEVFTNLYVRNFPADWNEEALRQFLEKYGE 228
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFP 216
I + + D G+ F F+ + + A++ + +N + +S + + P +
Sbjct: 229 ITSMMLKEDSKGRR--FAFVNYKEPEVAKEVVNTLNDLKLDESSEPLL---VCPHQD--- 280
Query: 217 KVKPPLLQPARKNK-------------IFVANLPSNINNSEFEELFARFGTITSSSLVSD 263
K K L A+ N +++ NL + ++ ELF FGTITSS ++ D
Sbjct: 281 KAKRQNLLRAQFNNSSMGQEDKRVTSNLYIKNLDDSFDDESLGELFKPFGTITSSKVMLD 340
Query: 264 -----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299
+ GF+ F P+ AT A++ M+ + K KPL V L+
Sbjct: 341 ANNHSRGFGFVCFTNPQEATKAIAAMHLKLVKGKPLYVGLA 381
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 100/195 (51%), Gaps = 15/195 (7%)
Query: 23 RSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVF 82
+ ++E +V+ L+V N + +AL +K+G + + + ++ + R FA + +
Sbjct: 193 KQDREGEEVF--TNLYVRNFPADWNEEALRQFLEKYGEITSMML--KEDSKGRRFAFVNY 248
Query: 83 NTPAEAKKARVEMNGHLI--GSKPVIITFVE--------LKPGQRSKPVGPEEKQYKKDK 132
P AK+ +N + S+P+++ + L+ + +G E+K+ +
Sbjct: 249 KEPEVAKEVVNTLNDLKLDESSEPLLVCPHQDKAKRQNLLRAQFNNSSMGQEDKRVTSN- 307
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMN 192
+++KNL ++ D+E L F FG I K++ D N S+GFGF+ F + + A KAI M+
Sbjct: 308 LYIKNLDDSFDDESLGELFKPFGTITSSKVMLDANNHSRGFGFVCFTNPQEATKAIAAMH 367
Query: 193 GRMIQHNSTFVSLAE 207
++++ +V LAE
Sbjct: 368 LKLVKGKPLYVGLAE 382
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 78/176 (44%), Gaps = 17/176 (9%)
Query: 128 YKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEK 186
+ ++V +L V E L F G + +++ RD KS G+ ++ ++S + AE
Sbjct: 24 FSSASLYVGDLKPDVTEAVLYEVFNTVGPVASIRVCRDSVTRKSLGYAYVNYYSTQDAEA 83
Query: 187 AIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFE 246
A+ +N I+ + T + + + P L+ + IFV NL +I+
Sbjct: 84 ALESLNYIEIKGHPTRIMWSN-----------RDPSLRRSGAGNIFVKNLDKSIDTKSLY 132
Query: 247 ELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVT 297
+ F+ FG I S + D K GF+ + + A A+ +NG + K ++V
Sbjct: 133 DTFSHFGPILSCKVAVDASGASKRYGFVHYENEESAREAIEKVNGMLIGGKRVEVA 188
>gi|295414050|gb|ADG08184.1| cytoplasmic poly(A) binding protein, partial [Schmidtea
mediterranea]
Length = 491
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/170 (34%), Positives = 96/170 (56%), Gaps = 15/170 (8%)
Query: 146 ELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL 205
+L+ F++FG I K++ DENGKSKGFGF+ F + AE A+ +NG+M + +V
Sbjct: 9 KLREMFLEFGEITSAKVMIDENGKSKGFGFVCFKDSETAESAVKALNGKMFKDRQLYVGR 68
Query: 206 AE-----IVPGKKVFPKVKPPLLQPARKNK---IFVANLPSNINNSEFEELFARFGTITS 257
A+ + + F K + + +R + ++V NL +I+++ ++ F FG ITS
Sbjct: 69 AQKKNERLDELRSHFEKQRAE--RSSRYTQGVNLYVKNLDDSIDDTRLKQEFVVFGNITS 126
Query: 258 SSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
+ +++D K GF+ F P+ AT AV+ MNG + SKPL V L+ K
Sbjct: 127 AKVMTDSNNRSKGFGFVCFSNPEEATKAVTEMNGKICGSKPLYVALAQRK 176
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 86/161 (53%), Gaps = 8/161 (4%)
Query: 55 FKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKP 114
F +FG + +V ++N +S+GF + F A+ A +NG + + + + + K
Sbjct: 14 FLEFGEITSAKVMIDENGKSKGFGFVCFKDSETAESAVKALNGKMFKDRQLYVGRAQKKN 73
Query: 115 GQRSKPVGPEEKQYKKDK--------VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE 166
+ + EKQ + ++VKNL +++D+ LK F+ FGNI K++ D
Sbjct: 74 ERLDELRSHFEKQRAERSSRYTQGVNLYVKNLDDSIDDTRLKQEFVVFGNITSAKVMTDS 133
Query: 167 NGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
N +SKGFGF+ F + + A KA+ EMNG++ +V+LA+
Sbjct: 134 NNRSKGFGFVCFSNPEEATKAVTEMNGKICGSKPLYVALAQ 174
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 46/77 (59%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L+V NL+ S+D+ L EF FG + +V + N+ S+GF + F+ P EA KA EMN
Sbjct: 100 LYVKNLDDSIDDTRLKQEFVVFGNITSAKVMTDSNNRSKGFGFVCFSNPEEATKAVTEMN 159
Query: 97 GHLIGSKPVIITFVELK 113
G + GSKP+ + + K
Sbjct: 160 GKICGSKPLYVALAQRK 176
>gi|190405722|gb|EDV08989.1| poly(A) binding protein [Saccharomyces cerevisiae RM11-1a]
Length = 262
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 97/192 (50%), Gaps = 12/192 (6%)
Query: 16 ISDDE-GARSNKENNKVYKEN-ELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-ND 72
I DD+ A + E+ V + L+V +LEPSV L + F G++ +RV R+
Sbjct: 17 IQDDQKQAATGSESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITK 76
Query: 73 ESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDK 132
S G+A + FN +KA ++N I + I + + P R K G
Sbjct: 77 TSLGYAYVNFNDHEAGRKAIEQLNYTPIKGRLCRIMWSQRDPSLRKKGSG---------N 127
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMN 192
+F+KNL +D + L F FG+I+ KI DENGKSKGFGF+ F AA++AI +N
Sbjct: 128 IFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALN 187
Query: 193 GRMIQHNSTFVS 204
G ++ +V+
Sbjct: 188 GMLLNGQEIYVA 199
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 87/201 (43%), Gaps = 29/201 (14%)
Query: 110 VELKPGQRSKPVGPEEKQYKKDK--VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDEN 167
+ ++ Q+ G E + + ++V +L +V E L F G++ +++ RD
Sbjct: 15 LNIQDDQKQAATGSESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAI 74
Query: 168 GK-SKGFGFIQFFSYKAAEKAIIEMN-----GRMIQHNSTFVSLAEIVPGKKVFPKVKPP 221
K S G+ ++ F ++A KAI ++N GR+ ++ + P
Sbjct: 75 TKTSLGYAYVNFNDHEAGRKAIEQLNYTPIKGRLC----------------RIMWSQRDP 118
Query: 222 LLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKH 276
L+ IF+ NL +I+N + F+ FG I SS + +D K GF+ F
Sbjct: 119 SLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGA 178
Query: 277 ATHAVSTMNGHVFKSKPLKVT 297
A A+ +NG + + + V
Sbjct: 179 AKEAIDALNGMLLNGQEIYVA 199
>gi|71033649|ref|XP_766466.1| polyadenylate binding protein [Theileria parva strain Muguga]
gi|68353423|gb|EAN34183.1| polyadenylate binding protein, putative [Theileria parva]
Length = 661
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 74/281 (26%), Positives = 133/281 (47%), Gaps = 35/281 (12%)
Query: 28 NNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPA 86
+ +V+ L+V +L+P V L F G + +RV R+ +S G+A + + +
Sbjct: 20 DTQVFSSASLYVGDLKPDVTEAVLYEVFNTVGPVASIRVCRDSVTRKSLGYAYVNYYSTQ 79
Query: 87 EAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEE 146
+A++A +N I P I + P R G +FVKNL +++D +
Sbjct: 80 DAQEALENLNYIEIKGHPTRIMWSNRDPSLRRSGAG---------NIFVKNLDKSIDTKS 130
Query: 147 LKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLA 206
L F FG I+ K+ D +G SK +GF+ + + ++A +AI ++NG +I
Sbjct: 131 LYDTFSHFGPILSCKVAVDASGASKRYGFVHYENEESAREAIEKVNGMLIG--------- 181
Query: 207 EIVPGKKVFPKVKPPLLQPARKNK-----IFVANLPSNINNSEFEELFARFGTITSSSLV 261
GK+V +V P L + R+++ ++V N P++ + + ++G ITS L
Sbjct: 182 ----GKRV--EVAPFLRKQDRESEEVFTNLYVRNFPADWDEEALRQFLEKYGEITSMMLK 235
Query: 262 SD---KHIGFIEFIMPKHATHAVSTMNGHVFK--SKPLKVT 297
D + F+ + P+ A V+T+N + S+PL V
Sbjct: 236 EDSKGRRFAFVNYKEPEVAKEVVNTLNDLKLEESSEPLLVC 276
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 74/281 (26%), Positives = 133/281 (47%), Gaps = 34/281 (12%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ V NL+ S+D ++L + F FG + +VA + + S+ + + + A++A ++N
Sbjct: 117 IFVKNLDKSIDTKSLYDTFSHFGPILSCKVAVDASGASKRYGFVHYENEESAREAIEKVN 176
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G LIG K VE+ P R + E + ++V+N DEE L+ K+G
Sbjct: 177 GMLIGGK-----RVEVAPFLRKQD---RESEEVFTNLYVRNFPADWDEEALRQFLEKYGE 228
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFP 216
I + + D G+ F F+ + + A++ + +N ++ +S + + P +
Sbjct: 229 ITSMMLKEDSKGRR--FAFVNYKEPEVAKEVVNTLNDLKLEESSEPLL---VCPHQD--- 280
Query: 217 KVKPPLLQPARKNK-------------IFVANLPSNINNSEFEELFARFGTITSSSLVSD 263
K K L A+ N +++ NL + ++ ELF FGTITSS ++ D
Sbjct: 281 KAKRQNLLRAQFNNSTMAQEDKRVTSNLYIKNLDDSFDDESLGELFKPFGTITSSKVMLD 340
Query: 264 -----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299
+ GF+ F P+ AT A++ M+ + K KPL V L+
Sbjct: 341 ANNHSRGFGFVCFTNPQEATKAIAAMHLKLVKGKPLYVGLA 381
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 97/194 (50%), Gaps = 13/194 (6%)
Query: 23 RSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVF 82
+ ++E+ +V+ L+V N D +AL +K+G + + + ++ + R FA + +
Sbjct: 193 KQDRESEEVF--TNLYVRNFPADWDEEALRQFLEKYGEITSMML--KEDSKGRRFAFVNY 248
Query: 83 NTPAEAKKARVEMNGHLI--GSKPVIITFVE-------LKPGQRSKPVGPEEKQYKKDKV 133
P AK+ +N + S+P+++ + L Q + +E + +
Sbjct: 249 KEPEVAKEVVNTLNDLKLEESSEPLLVCPHQDKAKRQNLLRAQFNNSTMAQEDKRVTSNL 308
Query: 134 FVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNG 193
++KNL ++ D+E L F FG I K++ D N S+GFGF+ F + + A KAI M+
Sbjct: 309 YIKNLDDSFDDESLGELFKPFGTITSSKVMLDANNHSRGFGFVCFTNPQEATKAIAAMHL 368
Query: 194 RMIQHNSTFVSLAE 207
++++ +V LAE
Sbjct: 369 KLVKGKPLYVGLAE 382
>gi|440857933|gb|ELR44433.1| hypothetical protein M91_06292, partial [Bos grunniens mutus]
Length = 149
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 56/158 (35%), Positives = 85/158 (53%), Gaps = 11/158 (6%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L P V L +F G + +R+ R+K S G+A + + P +AK+A +
Sbjct: 2 LYVGDLHPEVTEAMLYEKFSPAGPILSIRLCRDKITRRSLGYAYVNYQQPVDAKRALETL 61
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N +I +PV I + + P R VG VF+KNL +T+D + L + F FG
Sbjct: 62 NFDVIKGRPVRIMWSQRDPSLRKSGVG---------NVFIKNLGKTIDNKALYNIFSAFG 112
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNG 193
NI+ K+ DE G KG+GF+ F ++AE+AI MNG
Sbjct: 113 NILSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNG 149
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 72/159 (45%), Gaps = 16/159 (10%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEM 191
++V +L V E L F G I+ +++ RD+ +S G+ ++ + A++A+ +
Sbjct: 2 LYVGDLHPEVTEAMLYEKFSPAGPILSIRLCRDKITRRSLGYAYVNYQQPVDAKRALETL 61
Query: 192 NGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFAR 251
N +I+ + ++ + P L+ + +F+ NL I+N +F+
Sbjct: 62 NFDVIKGRPVRIMWSQ-----------RDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSA 110
Query: 252 FGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNG 286
FG I S + D K GF+ F + A A+ MNG
Sbjct: 111 FGNILSCKVACDEKGPKGYGFVHFQKQESAERAIDAMNG 149
>gi|167527097|ref|XP_001747881.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163773630|gb|EDQ87268.1| predicted protein [Monosiga brevicollis MX1]
Length = 553
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 81/274 (29%), Positives = 127/274 (46%), Gaps = 32/274 (11%)
Query: 37 LHVNNLEPSVDNQALINEFKKFG-TLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVE 94
L+V +L V L N F FG T++ VRV R+ S G+ + F TP +A K
Sbjct: 31 LYVGDLSKDVIEAELYNFFNSFGATVQSVRVCRDMVTQTSLGYGYVNFATPEDAAKVYEA 90
Query: 95 MNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKF 154
N + +PV I F E P +R VG +F+KNL VD + L F F
Sbjct: 91 ANFEELKGQPVRIMFSERDPTKRRSGVG---------NIFIKNLSAEVDNKALYDTFRVF 141
Query: 155 GNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKV 214
G ++ +++ D+ G S+G F+Q+ + A++ I ++N + I L ++V +
Sbjct: 142 GTVLSCRVLYDQEGNSRGIAFVQYEDAEVAKQVIAQVNDKKI--------LDKVVKVEAY 193
Query: 215 FPKVKPPL-LQPARKN--KIFVANLPSNINNSEFEELFARFGTITSSSLVSDKHIGFIEF 271
P+ + L + +KN +F N+ ++I++ + + F FG I S L S G F
Sbjct: 194 KPRRQRMLEAEETQKNFTNVFFKNVAADISDEDIMKEFENFGEIESKVLKSHDQFGRYGF 253
Query: 272 IMPK---HATHAVSTMNGHVFKSKPLKVTLSGTK 302
+ K A AVS +N KPL GTK
Sbjct: 254 VAYKDTADAQKAVSELN-----DKPLGA--DGTK 280
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 74/276 (26%), Positives = 136/276 (49%), Gaps = 22/276 (7%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL VDN+AL + F+ FGT+ RV ++ SRG A + + AK+ ++N
Sbjct: 120 IFIKNLSAEVDNKALYDTFRVFGTVLSCRVLYDQEGNSRGIAFVQYEDAEVAKQVIAQVN 179
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
I K ++ KP +R + + EE Q VF KN+ + +E++ F FG
Sbjct: 180 DKKILDK--VVKVEAYKP-RRQRMLEAEETQKNFTNVFFKNVAADISDEDIMKEFENFGE 236
Query: 157 IIEVKIVR--DENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNST--FVSLAE----- 207
I E K+++ D+ G+ +GF+ + A+KA+ E+N + + + T +V+ A+
Sbjct: 237 I-ESKVLKSHDQFGR---YGFVAYKDTADAQKAVSELNDKPLGADGTKLYVARAQRKSER 292
Query: 208 IVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDK--- 264
+ ++ F + + + + +++ N ++ E ++F +GTI S +V D+
Sbjct: 293 MGRLRREFERRRTEMRAKYKDANLYIKNFSEDVTEDELRKMFEAYGTIVSVRVVKDRDGQ 352
Query: 265 --HIGFIEFIMPKHATHAVSTMNGHV-FKSKPLKVT 297
GF+ F + AT A+ MNG + KPL V+
Sbjct: 353 SRQFGFVLFSSEEEATRAIQEMNGRMTADGKPLYVS 388
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
YK+ L++ N V L F+ +GT+ VRV ++++ +SR F ++F++ EA +A
Sbjct: 311 YKDANLYIKNFSEDVTEDELRKMFEAYGTIVSVRVVKDRDGQSRQFGFVLFSSEEEATRA 370
Query: 92 RVEMNGHLIGS-KPVIIT 108
EMNG + KP+ ++
Sbjct: 371 IQEMNGRMTADGKPLYVS 388
>gi|318087158|gb|ADV40171.1| putative polyA binding protein cytoplasmic 1 isoform 1 [Latrodectus
hesperus]
Length = 217
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 108/220 (49%), Gaps = 17/220 (7%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L V L +F G + +RV R+ S G+A + F P +A++
Sbjct: 10 YPVASLYVGDLHNDVTEAMLFEKFSSAGPVLSIRVCRDLIARRSLGYAYVNFQQPVDAER 69
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN ++ +P+ I + + P R VG VF+KNL +++D + +
Sbjct: 70 ALDTMNFDMVKGRPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKSIDNKAMYDT 120
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVP 210
F FGNI+ K+ DE SKG+GF+ F + +AA AI ++NG ++ FV + VP
Sbjct: 121 FSAFGNILSCKVATDEESNSKGYGFVHFETEEAANNAIQKVNGMLLNGRKVFV--GKFVP 178
Query: 211 GKKVFPKVKPPLLQPARK-NKIFVANLPSNINNSEFEELF 249
+ + L Q AR+ +++ N ++++ + E+
Sbjct: 179 RS----EREKQLGQKARRFMNVYIKNFGDDLDDEKLREML 214
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 82/183 (44%), Gaps = 20/183 (10%)
Query: 120 PVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGK-SKGFGFIQF 178
P GP Y ++V +L V E L F G ++ +++ RD + S G+ ++ F
Sbjct: 5 PNGP---NYPVASLYVGDLHNDVTEAMLFEKFSSAGPVLSIRVCRDLIARRSLGYAYVNF 61
Query: 179 FSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
AE+A+ MN M++ + ++ + P L+ + +F+ NL
Sbjct: 62 QQPVDAERALDTMNFDMVKGRPIRIMWSQ-----------RDPSLRKSGVGNVFIKNLDK 110
Query: 239 NINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKP 293
+I+N + F+ FG I S + +D K GF+ F + A +A+ +NG + +
Sbjct: 111 SIDNKAMYDTFSAFGNILSCKVATDEESNSKGYGFVHFETEEAANNAIQKVNGMLLNGRK 170
Query: 294 LKV 296
+ V
Sbjct: 171 VFV 173
>gi|124806145|ref|XP_001350640.1| polyadenylate-binding protein, putative [Plasmodium falciparum 3D7]
gi|23496765|gb|AAN36320.1|AE014847_47 polyadenylate-binding protein, putative [Plasmodium falciparum 3D7]
gi|119352249|gb|ABL63812.1| polyadenylate-binding protein [Plasmodium falciparum]
Length = 875
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 67/254 (26%), Positives = 118/254 (46%), Gaps = 22/254 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L V L F G + +RV R+ +S G+A + ++ A+A++A +
Sbjct: 18 LYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALDTL 77
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N I +P + + P R G +FVKNL +++D + L F FG
Sbjct: 78 NYTNIKGQPARLMWSHRDPSLRKSGTG---------NIFVKNLDKSIDNKALFDTFSMFG 128
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ DE GKSK +GF+ + ++A++AI ++NG + + +V F
Sbjct: 129 NILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGVQLGSKNVYVG---------PF 179
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD---KHIGFIEFI 272
K + ++V N P ++ + +LF +G ITS + D + FI +
Sbjct: 180 IKKSERATNDTKFTNLYVKNFPDSVTETHLRQLFNPYGEITSMIVKMDNKNRKFCFINYA 239
Query: 273 MPKHATHAVSTMNG 286
+ A +A+ +NG
Sbjct: 240 DAESAKNAMDNLNG 253
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 48/75 (64%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMN 192
+++KNL + +D+ L+ F FG I K++RDE +SKGFGF+ F S + A KA+ EM+
Sbjct: 452 LYIKNLDDGIDDIMLRELFEPFGTITSAKVMRDEKEQSKGFGFVCFASQEEANKAVTEMH 511
Query: 193 GRMIQHNSTFVSLAE 207
++I +V LAE
Sbjct: 512 LKIINGKPLYVGLAE 526
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 53/95 (55%)
Query: 25 NKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNT 84
N EN ++ L++ NL+ +D+ L F+ FGT+ +V R++ ++S+GF + F +
Sbjct: 440 NVENKNKHQGVNLYIKNLDDGIDDIMLRELFEPFGTITSAKVMRDEKEQSKGFGFVCFAS 499
Query: 85 PAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSK 119
EA KA EM+ +I KP+ + E + + S+
Sbjct: 500 QEEANKAVTEMHLKIINGKPLYVGLAEKREQRLSR 534
Score = 45.8 bits (107), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMN 285
+++ NL I++ ELF FGTITS+ ++ D K GF+ F + A AV+ M+
Sbjct: 452 LYIKNLDDGIDDIMLRELFEPFGTITSAKVMRDEKEQSKGFGFVCFASQEEANKAVTEMH 511
Query: 286 GHVFKSKPLKVTLS 299
+ KPL V L+
Sbjct: 512 LKIINGKPLYVGLA 525
>gi|402585898|gb|EJW79837.1| Poly(A) binding protein [Wuchereria bancrofti]
Length = 175
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 82/158 (51%), Gaps = 10/158 (6%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 15 YPMASLYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRDAITRRSLGYAYVNFQQPADAER 74
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN ++ KP+ I + + P R G +F+KNL +++D + +
Sbjct: 75 ALDTMNFDMMYGKPIRIMWSQRDPSMRRSGAG---------NIFIKNLDKSIDNKAIYDT 125
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAI 188
F FGNI+ K+ DE SKG+GF+ F + ++A+KAI
Sbjct: 126 FSMFGNILSCKVANDEESNSKGYGFVHFETEESAQKAI 163
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 76/176 (43%), Gaps = 23/176 (13%)
Query: 127 QYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAE 185
Y ++V +L V E L F G ++ +++ RD +S G+ ++ F AE
Sbjct: 14 SYPMASLYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRDAITRRSLGYAYVNFQQPADAE 73
Query: 186 KAIIEMNGRMIQHNSTFVSLAEIVPGK--KVFPKVKPPLLQPARKNKIFVANLPSNINNS 243
+A+ MN M+ GK ++ + P ++ + IF+ NL +I+N
Sbjct: 74 RALDTMNFDMMY-------------GKPIRIMWSQRDPSMRRSGAGNIFIKNLDKSIDNK 120
Query: 244 EFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
+ F+ FG I S + +D K GF+ F + A A+ + VF PL
Sbjct: 121 AIYDTFSMFGNILSCKVANDEESNSKGYGFVHFETEESAQKAIEKV--MVFFPNPL 174
>gi|67465872|ref|XP_649094.1| RNA-binding protein TIA-1 [Entamoeba histolytica HM-1:IMSS]
gi|56465456|gb|EAL43711.1| RNA-binding protein TIA-1, putative [Entamoeba histolytica
HM-1:IMSS]
gi|449705857|gb|EMD45818.1| RNA-binding protein TIA-1, putative [Entamoeba histolytica KU27]
Length = 306
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 67/267 (25%), Positives = 125/267 (46%), Gaps = 15/267 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+HV+ + SVD L F G + ++ R+K+ G+ + F A+ A+ M+
Sbjct: 45 VHVSGIHESVDEILLGRIFSIVGHVVSCKIMRDKSGVHAGYGFVEFVDSTTARFAKDNMD 104
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G ++ + ELK + YK +FV L V+++ L F KFG
Sbjct: 105 GRVVYGR-------ELKVNWSYTAQQENQGNYK---IFVGGLQPEVNDDLLYKTFQKFGR 154
Query: 157 IIEVKIVR-DENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVS-LAEIVPGKKV 214
+ + ++++ + GKSKG+GF+ F + AE A+ MNG ++ + V+ + + K
Sbjct: 155 VTDARVLKFTQTGKSKGYGFVTFIRKEDAETAMQMMNGEKLEGRNIKVNWVTSNIASKTE 214
Query: 215 FPKVKPPLLQ---PARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKHIGFIEF 271
PK + ++ +++ N+P N+ + + ++L A +G+I L DK FI+F
Sbjct: 215 QPKRSYDEINNETSSQNCTVYIGNIPKNVESDDLKQLLAEYGSIEEVRLNKDKGYAFIKF 274
Query: 272 IMPKHATHAVSTMNGHVFKSKPLKVTL 298
+ AT A+ NG + L+ +
Sbjct: 275 SKHESATSAILMCNGKIINGSTLRCSW 301
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 104/209 (49%), Gaps = 23/209 (11%)
Query: 5 GKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDV 64
G+ L+ +W + +EN YK + V L+P V++ L F+KFG + D
Sbjct: 110 GRELKVNWS--------YTAQQENQGNYK---IFVGGLQPEVNDDLLYKTFQKFGRVTDA 158
Query: 65 RVAR-NKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFV------ELKPGQR 117
RV + + +S+G+ + F +A+ A MNG + + + + +V + + +R
Sbjct: 159 RVLKFTQTGKSKGYGFVTFIRKEDAETAMQMMNGEKLEGRNIKVNWVTSNIASKTEQPKR 218
Query: 118 SKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQ 177
S E + V++ N+ + V+ ++LK ++G+I EV++ +D KG+ FI+
Sbjct: 219 SYDEINNETSSQNCTVYIGNIPKNVESDDLKQLLAEYGSIEEVRLNKD-----KGYAFIK 273
Query: 178 FFSYKAAEKAIIEMNGRMIQHNSTFVSLA 206
F +++A AI+ NG++I ++ S
Sbjct: 274 FSKHESATSAILMCNGKIINGSTLRCSWG 302
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 93/200 (46%), Gaps = 26/200 (13%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMN 192
V V + E+VDE L F G+++ KI+RD++G G+GF++F A A M+
Sbjct: 45 VHVSGIHESVDEILLGRIFSIVGHVVSCKIMRDKSGVHAGYGFVEFVDSTTARFAKDNMD 104
Query: 193 GRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKN-KIFVANLPSNINNSEFEELFAR 251
GR +V G+++ Q + N KIFV L +N+ + F +
Sbjct: 105 GR-------------VVYGRELKVNWSYTAQQENQGNYKIFVGGLQPEVNDDLLYKTFQK 151
Query: 252 FGTITSSSLVS------DKHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKPGV 305
FG +T + ++ K GF+ FI + A A+ MNG + + +KV +
Sbjct: 152 FGRVTDARVLKFTQTGKSKGYGFVTFIRKEDAETAMQMMNGEKLEGRNIKVNWVTS---- 207
Query: 306 SITNPTKAPKKPAYIDEVKN 325
+I + T+ PK+ DE+ N
Sbjct: 208 NIASKTEQPKRS--YDEINN 225
>gi|407038416|gb|EKE39116.1| RNA-binding protein TIA-1, putative [Entamoeba nuttalli P19]
Length = 306
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 67/267 (25%), Positives = 125/267 (46%), Gaps = 15/267 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+HV+ + SVD L F G + ++ R+K+ G+ + F A+ A+ M+
Sbjct: 45 VHVSGIHESVDEILLGRIFSIVGHVVSCKIMRDKSGVHAGYGFVEFVDSTTARFAKDNMD 104
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G ++ + ELK + YK +FV L V+++ L F KFG
Sbjct: 105 GRVVYGR-------ELKVNWSYTAQQENQGNYK---IFVGGLQPEVNDDLLYKTFQKFGR 154
Query: 157 IIEVKIVR-DENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVS-LAEIVPGKKV 214
+ + ++++ + GKSKG+GF+ F + AE A+ MNG ++ + V+ + + K
Sbjct: 155 VTDARVLKFTQTGKSKGYGFVTFIRKEDAETAMQMMNGEKLEGRNIKVNWVTSNIASKTE 214
Query: 215 FPKVKPPLLQ---PARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKHIGFIEF 271
PK + ++ +++ N+P N+ + + ++L A +G+I L DK FI+F
Sbjct: 215 QPKRSYDEINNETSSQNCTVYIGNIPKNVESDDLKQLLAEYGSIEEVRLNKDKGYAFIKF 274
Query: 272 IMPKHATHAVSTMNGHVFKSKPLKVTL 298
+ AT A+ NG + L+ +
Sbjct: 275 SKHESATSAILMCNGKIINGSTLRCSW 301
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 104/209 (49%), Gaps = 23/209 (11%)
Query: 5 GKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDV 64
G+ L+ +W + +EN YK + V L+P V++ L F+KFG + D
Sbjct: 110 GRELKVNWS--------YTAQQENQGNYK---IFVGGLQPEVNDDLLYKTFQKFGRVTDA 158
Query: 65 RVAR-NKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFV------ELKPGQR 117
RV + + +S+G+ + F +A+ A MNG + + + + +V + + +R
Sbjct: 159 RVLKFTQTGKSKGYGFVTFIRKEDAETAMQMMNGEKLEGRNIKVNWVTSNIASKTEQPKR 218
Query: 118 SKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQ 177
S E + V++ N+ + V+ ++LK ++G+I EV++ +D KG+ FI+
Sbjct: 219 SYDEINNETSSQNCTVYIGNIPKNVESDDLKQLLAEYGSIEEVRLNKD-----KGYAFIK 273
Query: 178 FFSYKAAEKAIIEMNGRMIQHNSTFVSLA 206
F +++A AI+ NG++I ++ S
Sbjct: 274 FSKHESATSAILMCNGKIINGSTLRCSWG 302
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 93/200 (46%), Gaps = 26/200 (13%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMN 192
V V + E+VDE L F G+++ KI+RD++G G+GF++F A A M+
Sbjct: 45 VHVSGIHESVDEILLGRIFSIVGHVVSCKIMRDKSGVHAGYGFVEFVDSTTARFAKDNMD 104
Query: 193 GRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKN-KIFVANLPSNINNSEFEELFAR 251
GR +V G+++ Q + N KIFV L +N+ + F +
Sbjct: 105 GR-------------VVYGRELKVNWSYTAQQENQGNYKIFVGGLQPEVNDDLLYKTFQK 151
Query: 252 FGTITSSSLVS------DKHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKPGV 305
FG +T + ++ K GF+ FI + A A+ MNG + + +KV +
Sbjct: 152 FGRVTDARVLKFTQTGKSKGYGFVTFIRKEDAETAMQMMNGEKLEGRNIKVNWVTS---- 207
Query: 306 SITNPTKAPKKPAYIDEVKN 325
+I + T+ PK+ DE+ N
Sbjct: 208 NIASKTEQPKRS--YDEINN 225
>gi|342183555|emb|CCC93035.1| poly(A)-binding protein 1 [Trypanosoma congolense IL3000]
Length = 557
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 67/244 (27%), Positives = 123/244 (50%), Gaps = 21/244 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
+ V L+P+++ Q L + F + G + VRV + +S G+ + F PA+A+KA ++
Sbjct: 11 IWVGGLDPNLNEQKLYDHFVRVGPVASVRVCVDTVTQKSLGYGYVNFQNPADAEKA-LDQ 69
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
G +G+K + I ++ P +R V + VK L TVD LK F KFG
Sbjct: 70 AGVKLGTKHIRIAKIQRDPSKRRSGV---------TNIVVKKLPSTVDTYALKEMFSKFG 120
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
+ + + DE G+S+G+ I + ++A +A+ E+NG I S V ++
Sbjct: 121 RLTAIGLATDEKGESRGYARISYEKEESAVEAVRELNGVSIDDCSITV--------ERYQ 172
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKHIGFIEFIMPK 275
P + L+ + ++V NL ++++ + +E+FA+FG +TS+ + + + F
Sbjct: 173 PHHREEQLK--QYTNLYVKNLDPSVDDEKLKEVFAKFGEVTSAKVRDLGNNSSVGFAYVA 230
Query: 276 HATH 279
+ATH
Sbjct: 231 YATH 234
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 74/274 (27%), Positives = 129/274 (47%), Gaps = 21/274 (7%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
V L +VD AL F KFG L + +A ++ ESRG+A I + A +A E+NG
Sbjct: 100 VKKLPSTVDTYALKEMFSKFGRLTAIGLATDEKGESRGYARISYEKEESAVEAVRELNGV 159
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
I + + +R +P EE+ + ++VKNL +VD+E+LK F KFG +
Sbjct: 160 SIDDCSITV--------ERYQPHHREEQLKQYTNLYVKNLDPSVDDEKLKEVFAKFGEVT 211
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKV 218
K+ N S GF ++ + +++AA KA+ E++ + + L+ + +
Sbjct: 212 SAKVRDLGNNSSVGFAYVAYATHEAAAKAVEELDEKSSTLAKEGMKLSVCRFRSREERQR 271
Query: 219 KPPLLQP------ARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDK------HI 266
+ ++ + ++V N + + + +ELF RFG S S++ DK
Sbjct: 272 ERERVRRERQQQHGKYPNLYVKNFDDTVTSEKLKELFERFGETVSVSVMMDKATQVSRCF 331
Query: 267 GFIEFIMPKHATHAVSTMNGHV-FKSKPLKVTLS 299
GF+ F A+ A+ ++G +PL VT +
Sbjct: 332 GFVSFKEQSAASQAIQELHGSTALGPRPLFVTYA 365
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 85/166 (51%), Gaps = 9/166 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L+V NL+PSVD++ L F KFG + +V N+ S GFA + + T A KA E++
Sbjct: 186 LYVKNLDPSVDDEKLKEVFAKFGEVTSAKVRDLGNNSSVGFAYVAYATHEAAAKAVEELD 245
Query: 97 --GHLIGSKPVIITFVELKPGQRSKPVGPEEKQY------KKDKVFVKNLVETVDEEELK 148
+ + + ++ + + + ++ K ++VKN +TV E+LK
Sbjct: 246 EKSSTLAKEGMKLSVCRFRSREERQRERERVRRERQQQHGKYPNLYVKNFDDTVTSEKLK 305
Query: 149 SHFIKFGNIIEVKIVRDENGK-SKGFGFIQFFSYKAAEKAIIEMNG 193
F +FG + V ++ D+ + S+ FGF+ F AA +AI E++G
Sbjct: 306 ELFERFGETVSVSVMMDKATQVSRCFGFVSFKEQSAASQAIQELHG 351
>gi|154345147|ref|XP_001568515.1| putative poly(A)-binding protein 2 [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134065852|emb|CAM43630.1| putative poly(A)-binding protein 2 [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 579
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 68/257 (26%), Positives = 126/257 (49%), Gaps = 27/257 (10%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
+ V L+P + Q L + F + G + VRV + +S G+ + F PA+A+KA ++
Sbjct: 10 IWVGGLDPDLQEQRLYDYFVRIGPVTSVRVCVDSATQKSLGYGYVNFQDPADAEKA-LDQ 68
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
G +GS+ + I ++ P +R V + + VK L +TVD LK F KFG
Sbjct: 69 AGTKLGSRYLRIAKIQRDPSKRRSGV---------NNILVKKLPKTVDTYALKELFSKFG 119
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
+ + + DE G+S+G+ I F ++A +A+ EM+G + + V ++
Sbjct: 120 RLTAIGLACDEKGESRGYARISFEREESAVEAVKEMDGMEMDGQAIVV--------ERYQ 171
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSS------SLVSDKHIGFI 269
+ + LL+ + ++V NL + + + FAR+G ++S+ + S+ +G++
Sbjct: 172 AQHRDELLK--QFTNLYVKNLDPAVTDEKLRAFFARYGAVSSAKVRDLGGVQSEVGLGYV 229
Query: 270 EFIMPKHATHAVSTMNG 286
F + A AV +NG
Sbjct: 230 AFEKHEDAARAVEELNG 246
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 73/285 (25%), Positives = 128/285 (44%), Gaps = 34/285 (11%)
Query: 35 NELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVE 94
N + V L +VD AL F KFG L + +A ++ ESRG+A I F A +A E
Sbjct: 95 NNILVKKLPKTVDTYALKELFSKFGRLTAIGLACDEKGESRGYARISFEREESAVEAVKE 154
Query: 95 MNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKF 154
M+G + + +++ +R + +E + ++VKNL V +E+L++ F ++
Sbjct: 155 MDGMEMDGQAIVV--------ERYQAQHRDELLKQFTNLYVKNLDPAVTDEKLRAFFARY 206
Query: 155 GNIIEVKIVRDENGKSK--GFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGK 212
G + K VRD G G G++ F ++ A +A+ E+NG+ + ++ AE
Sbjct: 207 GAVSSAK-VRDLGGVQSEVGLGYVAFEKHEDAARAVEELNGKECE-----IAKAESTLDV 260
Query: 213 KVFPKVKPPLLQP-----------ARKNKIFVANLPSNINNSEFEELFARFGTITSSSLV 261
F + ++ ++V + + EELF R+G S +++
Sbjct: 261 SRFRSREERQRDRERQRRERAQQHSKYPNLYVKGFDDTVTSERLEELFQRYGETVSVTVM 320
Query: 262 SDKH------IGFIEFIMPKHATHAVSTMNGHVFKS-KPLKVTLS 299
DK GF+ A+ A+ +NG F +PL VT +
Sbjct: 321 MDKETGMSRCFGFVSMKDQNAASQAIQELNGSTFLCPRPLFVTYA 365
>gi|167391953|ref|XP_001739964.1| nucleolysin TIAR [Entamoeba dispar SAW760]
gi|165896141|gb|EDR23641.1| nucleolysin TIAR, putative [Entamoeba dispar SAW760]
Length = 306
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 68/275 (24%), Positives = 122/275 (44%), Gaps = 31/275 (11%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+HV+ + SVD L F G + ++ R+K+ G+ + F A+ A+ M+
Sbjct: 45 VHVSGIHESVDEILLGRIFSIVGHVVSCKIMRDKSGTHAGYGFVEFVDSTTARFAKDNMD 104
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G ++ + ELK + YK +FV L V+++ L F KFG
Sbjct: 105 GRVVYGR-------ELKVNWSYTAQQENQGSYK---IFVGGLQPEVNDDLLYKTFQKFGR 154
Query: 157 IIEVKIVR-DENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
+ + ++++ + GKSKG+GF+ F + AE A+ MNG ++ + V+ V
Sbjct: 155 VTDARVLKFTQTGKSKGYGFVTFIRKEDAETAMQMMNGEKLEGRNIKVNW--------VT 206
Query: 216 PKVKPPLLQPARK------------NKIFVANLPSNINNSEFEELFARFGTITSSSLVSD 263
+ QP R +++ N+P N+ + + ++L A +G+I L D
Sbjct: 207 SNIASKTEQPKRSYDEINNETSIQNCTVYIGNIPKNVESDDLKQLLAEYGSIEEVRLNKD 266
Query: 264 KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTL 298
K FI+F + AT A+ NG + L+ +
Sbjct: 267 KGYAFIKFSKHESATSAILMCNGKIINGSTLRCSW 301
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 104/209 (49%), Gaps = 23/209 (11%)
Query: 5 GKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDV 64
G+ L+ +W + +EN YK + V L+P V++ L F+KFG + D
Sbjct: 110 GRELKVNWS--------YTAQQENQGSYK---IFVGGLQPEVNDDLLYKTFQKFGRVTDA 158
Query: 65 RVAR-NKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFV------ELKPGQR 117
RV + + +S+G+ + F +A+ A MNG + + + + +V + + +R
Sbjct: 159 RVLKFTQTGKSKGYGFVTFIRKEDAETAMQMMNGEKLEGRNIKVNWVTSNIASKTEQPKR 218
Query: 118 SKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQ 177
S E + V++ N+ + V+ ++LK ++G+I EV++ +D KG+ FI+
Sbjct: 219 SYDEINNETSIQNCTVYIGNIPKNVESDDLKQLLAEYGSIEEVRLNKD-----KGYAFIK 273
Query: 178 FFSYKAAEKAIIEMNGRMIQHNSTFVSLA 206
F +++A AI+ NG++I ++ S
Sbjct: 274 FSKHESATSAILMCNGKIINGSTLRCSWG 302
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 95/205 (46%), Gaps = 26/205 (12%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMN 192
V V + E+VDE L F G+++ KI+RD++G G+GF++F A A M+
Sbjct: 45 VHVSGIHESVDEILLGRIFSIVGHVVSCKIMRDKSGTHAGYGFVEFVDSTTARFAKDNMD 104
Query: 193 GRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKN-KIFVANLPSNINNSEFEELFAR 251
GR +V G+++ Q + + KIFV L +N+ + F +
Sbjct: 105 GR-------------VVYGRELKVNWSYTAQQENQGSYKIFVGGLQPEVNDDLLYKTFQK 151
Query: 252 FGTITSSSLVS------DKHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKPGV 305
FG +T + ++ K GF+ FI + A A+ MNG + + +KV +
Sbjct: 152 FGRVTDARVLKFTQTGKSKGYGFVTFIRKEDAETAMQMMNGEKLEGRNIKVNWVTS---- 207
Query: 306 SITNPTKAPKKPAYIDEVKNVIGIK 330
+I + T+ PK+ DE+ N I+
Sbjct: 208 NIASKTEQPKRS--YDEINNETSIQ 230
>gi|224012523|ref|XP_002294914.1| polyadenlyte binding protein [Thalassiosira pseudonana CCMP1335]
gi|220969353|gb|EED87694.1| polyadenlyte binding protein [Thalassiosira pseudonana CCMP1335]
Length = 612
Score = 94.0 bits (232), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 74/266 (27%), Positives = 120/266 (45%), Gaps = 30/266 (11%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
+ L++ +L P V+ L F G + +RV R+ S G+A + ++ A+A++
Sbjct: 6 FSSASLYIGDLLPEVNEGFLFEIFNAVGPVASIRVCRDAVTRRSLGYAYVNYHQVADAER 65
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN I KP I + + P R VG +FVKNL E +D ++L
Sbjct: 66 ALDSMNFTEIKGKPCRIMWSQRDPSMRRSGVG---------NIFVKNLHEGIDNKQLYDT 116
Query: 151 FIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL---A 206
F FGNI+ K+V D+ G SKG+G++ + + +AA AI +++G +I V +
Sbjct: 117 FSLFGNILSCKVVTDKATGLSKGYGYVHYETNEAAASAIEKLDGMLIDGKEVQVGVFMRR 176
Query: 207 EIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSS---SLVSD 263
+ PG+ A +F+ N+P + E F FG + S+ +
Sbjct: 177 DNRPGQ-------------ADWTNVFIKNIPFEWTEDKLREEFEGFGEVVSAKPKEVQGS 223
Query: 264 KHIGFIEFIMPKHATHAVSTMNGHVF 289
GF+ F + A AV MN F
Sbjct: 224 LGFGFVNFATHEAAAAAVKEMNDKEF 249
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 85/319 (26%), Positives = 138/319 (43%), Gaps = 46/319 (14%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK W + D RS N + V NL +DN+ L + F FG +
Sbjct: 76 KGKPCRIMWSQ--RDPSMRRSGVGN--------IFVKNLHEGIDNKQLYDTFSLFGNILS 125
Query: 64 VRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFV---ELKPGQRSK 119
+V +K S+G+ + + T A A +++G LI K V + + +PGQ
Sbjct: 126 CKVVTDKATGLSKGYGYVHYETNEAAASAIEKLDGMLIDGKEVQVGVFMRRDNRPGQADW 185
Query: 120 PVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFF 179
VF+KN+ E++L+ F FG ++ K E S GFGF+ F
Sbjct: 186 -----------TNVFIKNIPFEWTEDKLREEFEGFGEVVSAK--PKEVQGSLGFGFVNFA 232
Query: 180 SYKAAEKAIIEMNGRMIQHNS--------TFVSLAEIVPGKKVFPKVKPPLLQPARKNK- 230
+++AA A+ EMN + FV A+ ++ + K + R K
Sbjct: 233 THEAAAAAVKEMNDKEFTVTEDGEEVTKVLFVGRAQKKAERERELRAKYEAEKIDRIAKF 292
Query: 231 ----IFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHA 280
++V NL + + + F+ GTITS+ ++ D + GF+ + P+ AT A
Sbjct: 293 QGVNLYVKNLDDTVTDDVLRDEFSAMGTITSARVMKDLKTGISRGFGFVCYSTPEDATRA 352
Query: 281 VSTMNGHVFKSKPLKVTLS 299
V+ MNG + KP+ V L+
Sbjct: 353 VNEMNGKIILGKPIFVALA 371
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKKARVEM 95
L+V NL+ +V + L +EF GT+ RV ++ K SRGF + ++TP +A +A EM
Sbjct: 297 LYVKNLDDTVTDDVLRDEFSAMGTITSARVMKDLKTGISRGFGFVCYSTPEDATRAVNEM 356
Query: 96 NGHLIGSKPVIITFVELKPGQRSK 119
NG +I KP+ + + + +R++
Sbjct: 357 NGKIILGKPIFVALAQRRDVRRAQ 380
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRD-ENGKSKGFGFIQFFSYKAAEKAIIEM 191
++VKNL +TV ++ L+ F G I ++++D + G S+GFGF+ + + + A +A+ EM
Sbjct: 297 LYVKNLDDTVTDDVLRDEFSAMGTITSARVMKDLKTGISRGFGFVCYSTPEDATRAVNEM 356
Query: 192 NGRMIQHNSTFVSLAE 207
NG++I FV+LA+
Sbjct: 357 NGKIILGKPIFVALAQ 372
>gi|224104133|ref|XP_002313332.1| predicted protein [Populus trichocarpa]
gi|222849740|gb|EEE87287.1| predicted protein [Populus trichocarpa]
Length = 415
Score = 94.0 bits (232), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 71/287 (24%), Positives = 124/287 (43%), Gaps = 34/287 (11%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L + +L+ D L + F G + +++ RNK + G+ + F + A A++
Sbjct: 22 LWIGDLQYWADESYLTSCFAHTGEVVSIKIIRNKLTGQPEGYGFVEFVSHAAAERILQTY 81
Query: 96 NG-HLIGSKPVI-ITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHF-I 152
NG + G++ + + G+R GPE +FV +L V + L+ F +
Sbjct: 82 NGTQMPGTEQTFRLNWASFGIGERRPDAGPEHS------IFVGDLAPDVTDYLLQETFRV 135
Query: 153 KFGNIIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE---- 207
+ ++ K+V D N G+SKG+GF++F +A+ EMNG +S+A
Sbjct: 136 HYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMTEMNGVFCSTRPMRISMATPKKT 195
Query: 208 -------IVPGKKVFPKVKPPLLQPAR---------KNKIFVANLPSNINNSEFEELFAR 251
VP K +P P P + IFV NL N + + F +
Sbjct: 196 TSFQQQYAVP-KAFYPA--PAYTAPVQVVSADGDVTNTTIFVGNLDPNATEEDLRQTFLQ 252
Query: 252 FGTITSSSLVSDKHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTL 298
G I S + + + GF++F A A+ M GHV +P++++
Sbjct: 253 LGEIASVKIPAGRGCGFVQFATRTSAEEAIQRMQGHVIGQQPVRISW 299
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 110/227 (48%), Gaps = 26/227 (11%)
Query: 114 PGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKG 172
PG +P EE + +++ +L DE L S F G ++ +KI+R++ G+ +G
Sbjct: 7 PGGYHQPATLEEVR----TLWIGDLQYWADESYLTSCFAHTGEVVSIKIIRNKLTGQPEG 62
Query: 173 FGFIQFFSYKAAEKAIIEMNG-RMIQHNSTF-VSLAEIVPGKKVFPKVKPPLLQPARKNK 230
+GF++F S+ AAE+ + NG +M TF ++ A G++ P P ++
Sbjct: 63 YGFVEFVSHAAAERILQTYNGTQMPGTEQTFRLNWASFGIGERR-PDAGP-------EHS 114
Query: 231 IFVANLPSNINNSEFEELF-ARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVST 283
IFV +L ++ + +E F + ++ + +V+D K GF++F A++
Sbjct: 115 IFVGDLAPDVTDYLLQETFRVHYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMTE 174
Query: 284 MNGHVFKSKPLKVTLSGTKPGVSITNPTKAPK----KPAYIDEVKNV 326
MNG ++P++++++ K S PK PAY V+ V
Sbjct: 175 MNGVFCSTRPMRISMATPKKTTSFQQQYAVPKAFYPAPAYTAPVQVV 221
>gi|308493359|ref|XP_003108869.1| hypothetical protein CRE_11982 [Caenorhabditis remanei]
gi|308247426|gb|EFO91378.1| hypothetical protein CRE_11982 [Caenorhabditis remanei]
Length = 404
Score = 94.0 bits (232), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 69/273 (25%), Positives = 132/273 (48%), Gaps = 16/273 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L+V NL+PSV + F + G++ +V + ++ +A + F ++A +A MN
Sbjct: 46 LYVGNLDPSVSEDLIATLFNQIGSVTKTKVIFDGANDP--YAFVEFLDHSQASQALQTMN 103
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
L+ + + + + ++PGQ+ V + VFV +L VD ++L+ F FG+
Sbjct: 104 KRLLLDREMKVNWA-VEPGQQPSKVDTTRHFH----VFVGDLSSEVDNQKLREAFQPFGD 158
Query: 157 IIEVKIVRDENG-KSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
+ + K++RD N KSKG+GF+ + + AE+AI +MNG+ + + + A PG +
Sbjct: 159 VSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATRKPGDQEK 218
Query: 216 P------KVKPPLLQPARKN-KIFVANLPSNINNSEFEELFARFGTITSSSLVSDKHIGF 268
P Q + N ++V N+ +N++ E + FA +G I+ + + F
Sbjct: 219 PTHYNEKSFDEIYNQTSGDNTSVYVGNI-ANLSEDEIRQAFASYGRISEVRIFKMQGYAF 277
Query: 269 IEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGT 301
++F A A+ MN + ++ + T
Sbjct: 278 VKFDNKDAAAKAIVQMNNQEVGGQLVRCSWGKT 310
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 86/178 (48%), Gaps = 15/178 (8%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMN 192
++V NL +V E+ + + F + G++ + K++ D G + + F++F + A +A+ MN
Sbjct: 46 LYVGNLDPSVSEDLIATLFNQIGSVTKTKVIFD--GANDPYAFVEFLDHSQASQALQTMN 103
Query: 193 GRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARF 252
R++ V+ A V P +P + R +FV +L S ++N + E F F
Sbjct: 104 KRLLLDREMKVNWA-------VEPGQQPSKVDTTRHFHVFVGDLSSEVDNQKLREAFQPF 156
Query: 253 GTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKPG 304
G ++ + ++ D K GF+ + + A A+ MNG + ++ + KPG
Sbjct: 157 GDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATRKPG 214
>gi|350536139|ref|NP_001234487.1| DNA-binding protein [Solanum lycopersicum]
gi|40804404|gb|AAR91698.1| DNA-binding protein [Solanum lycopersicum]
Length = 428
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 130/285 (45%), Gaps = 23/285 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
+ + +L+ +D L F + G + V+V RNK +S + I FNT A+K
Sbjct: 81 IWIGDLQQWMDEGYLHTCFAQAGEVISVKVIRNKQTGQSERYGFIEFNTHEAAEKVLQSY 140
Query: 96 NGHLI--GSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFI- 152
NG ++ +P + + G++ VG +FV +L V + L+ F
Sbjct: 141 NGTMMPNAEQPFRLNWSAFSSGEKRADVGAGAGSGSDLSIFVGDLASDVTDTMLRDTFSS 200
Query: 153 KFGNIIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLA---EI 208
++ ++ K+V D N G+SKG+GF++F +A+ EMNG + + +A +
Sbjct: 201 RYPSVKGAKVVIDSNTGRSKGYGFVRFDDESERSRAMTEMNGIYCSSRAMRIGVATPKKP 260
Query: 209 VPGKKVFPKV---------KPPLLQPARKNK------IFVANLPSNINNSEFEELFARFG 253
P ++ FP+ Q ++ + +FV L S + + E + F++FG
Sbjct: 261 SPMQQYFPQAVILAGGHASNGAATQTSQTDSDLSNTTVFVGGLDSEVTDEELRQSFSQFG 320
Query: 254 TITSSSLVSDKHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTL 298
+ S + + K GF++F A A+ +NG V ++ ++++
Sbjct: 321 NVVSVKIPAGKGCGFVQFSERSAAEDAIEKLNGTVIGAQTVRLSW 365
>gi|255544854|ref|XP_002513488.1| nuclear acid binding protein, putative [Ricinus communis]
gi|223547396|gb|EEF48891.1| nuclear acid binding protein, putative [Ricinus communis]
Length = 412
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 71/285 (24%), Positives = 124/285 (43%), Gaps = 28/285 (9%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L + +L+ VD L + F G + +++ RNK + G+ + F + A++
Sbjct: 24 LWIGDLQYWVDENYLSSCFAHTGEVLSIKIIRNKITGQPEGYGFVEFVSHVAAERILQTY 83
Query: 96 NG-HLIGSKPVI-ITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHF-I 152
NG + G++ + + G+R GPE +FV +L V + L+ F
Sbjct: 84 NGTQMPGTEQTFRLNWASFGIGERRPDAGPEHS------IFVGDLSPDVTDYLLQETFRA 137
Query: 153 KFGNIIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLA----- 206
+ ++ K+V D N G+SKG+GF++F +A+ EMNG +S A
Sbjct: 138 NYPSVRGAKVVTDPNTGRSKGYGFVKFGDENERNRAMTEMNGVFCSTRPMRISAATPKKT 197
Query: 207 -----EIVPGKKVFP---KVKPPLLQPARKN----KIFVANLPSNINNSEFEELFARFGT 254
+ K ++P P + PA + IFV NL N+ E +F +FG
Sbjct: 198 AAYQQQYATAKAIYPLPAYTAPVQVVPADNDITNTTIFVGNLDPNVTEEELRPIFLQFGE 257
Query: 255 ITSSSLVSDKHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299
I + + GF++F A A+ M GHV +P++++
Sbjct: 258 IVYVKIPVGRGCGFVQFATRASAEEAIQRMQGHVIGQQPVRISWG 302
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 102/199 (51%), Gaps = 22/199 (11%)
Query: 114 PGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKG 172
PG +P EE + +++ +L VDE L S F G ++ +KI+R++ G+ +G
Sbjct: 9 PGGYHQPATLEEVR----TLWIGDLQYWVDENYLSSCFAHTGEVLSIKIIRNKITGQPEG 64
Query: 173 FGFIQFFSYKAAEKAIIEMNG-RMIQHNSTF-VSLAEIVPGKKVFPKVKPPLLQPARKNK 230
+GF++F S+ AAE+ + NG +M TF ++ A G++ P P ++
Sbjct: 65 YGFVEFVSHVAAERILQTYNGTQMPGTEQTFRLNWASFGIGERR-PDAGP-------EHS 116
Query: 231 IFVANLPSNINNSEFEELF-ARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVST 283
IFV +L ++ + +E F A + ++ + +V+D K GF++F A++
Sbjct: 117 IFVGDLSPDVTDYLLQETFRANYPSVRGAKVVTDPNTGRSKGYGFVKFGDENERNRAMTE 176
Query: 284 MNGHVFKSKPLKVTLSGTK 302
MNG ++P++++ + K
Sbjct: 177 MNGVFCSTRPMRISAATPK 195
>gi|291231285|ref|XP_002735593.1| PREDICTED: TIA-1 related protein-like [Saccoglossus kowalevskii]
Length = 409
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 75/298 (25%), Positives = 126/298 (42%), Gaps = 48/298 (16%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVR-VARNKNDESRGFAIIVFNTPAEAKKARVEM 95
L+V NL+ V ++ F + G + + +A + ++ + + F + A A M
Sbjct: 16 LYVGNLDRQVTEAFILQLFGQIGPCKSCKMIAEHGGNDP--YCFVEFVEHSHAAAALQTM 73
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
NG +I K V + + + P ++ VFV +L VD +LK+ F FG
Sbjct: 74 NGRMILGKEVKVNWA-------TTPSSMKKDTSNHHHVFVGDLSSEVDTPDLKAAFAPFG 126
Query: 156 NIIEVKIVRD-ENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKV 214
I + ++V+D + KSKG+GF+ F + AE AI MNG+ + + + A P
Sbjct: 127 QISDARVVKDLQTNKSKGYGFVSFLNKVDAENAIQGMNGQWLSGRAIRTNWATRKP---- 182
Query: 215 FPKVKPPLLQPARKNK----------------IFVANLPSNINNSEFEELFARFGTITSS 258
PP QP + +++ + + + + E F+ +G I
Sbjct: 183 -----PPPRQPETTKQLSYDDVCNSSSYTNTTVYIGGVTTGLTEGKMRETFSHYGHIQEV 237
Query: 259 SLVSDKHIGFIEFIMPKHATHAV-----STMNGHVFK-------SKPLKVTLSGTKPG 304
+ DK FI F+ + A HA+ S +NGH+ K S PL T PG
Sbjct: 238 RIFPDKGYAFIRFMTHESAAHAIVSVNGSQINGHMVKCSWGKESSDPLYQAQPNTYPG 295
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 82/173 (47%), Gaps = 15/173 (8%)
Query: 34 ENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKKAR 92
+ + V +L VD L F FG + D RV ++ + ++S+G+ + F +A+ A
Sbjct: 101 HHHVFVGDLSSEVDTPDLKAAFAPFGQISDARVVKDLQTNKSKGYGFVSFLNKVDAENAI 160
Query: 93 VEMNGHLIGSKPVIITFVELKPGQRSKPVGPEE---------KQYKKDKVFVKNLVETVD 143
MNG + + + + KP +P ++ Y V++ + +
Sbjct: 161 QGMNGQWLSGRAIRTNWATRKPPPPRQPETTKQLSYDDVCNSSSYTNTTVYIGGVTTGLT 220
Query: 144 EEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMI 196
E +++ F +G+I EV+I D KG+ FI+F ++++A AI+ +NG I
Sbjct: 221 EGKMRETFSHYGHIQEVRIFPD-----KGYAFIRFMTHESAAHAIVSVNGSQI 268
>gi|242021493|ref|XP_002431179.1| nucleolysin TIA-1, putative [Pediculus humanus corporis]
gi|212516428|gb|EEB18441.1| nucleolysin TIA-1, putative [Pediculus humanus corporis]
Length = 403
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 74/282 (26%), Positives = 119/282 (42%), Gaps = 39/282 (13%)
Query: 24 SNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFN 83
SN E N L+V NL+ SV L F + G+++ ++ R N++ +A + F
Sbjct: 2 SNSEENY---PKTLYVGNLDVSVTEDLLCTLFSQIGSVKGCKIIREPNNDP--YAFVEFV 56
Query: 84 TPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVD 143
A A + MN + K + + + PG + P++ +FV +L ++
Sbjct: 57 NHQAASTALIAMNKRHVLEKEIKVNWA-TSPGNQ-----PKQDTSSHHHIFVGDLSPEIE 110
Query: 144 EEELKSHFIKFGNIIEVKIVRD-ENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTF 202
L+ F FG I +IVRD + KSKG+ F+ F AE AI MNG+ + + S
Sbjct: 111 MHTLREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAESAIHAMNGQWLGNRSIR 170
Query: 203 VSLAEIVPGKKVFPKVKPPLLQPARKN-------------------KIFVANLPSNINNS 243
+ + P PP + +R+ ++ + IN
Sbjct: 171 TNWSTRKP--------PPPRTERSRQGNAKAVSYEEVYNQSSPTNCTVYCGGFTNGINED 222
Query: 244 EFEELFARFGTITSSSLVSDKHIGFIEFIMPKHATHAVSTMN 285
E+ F+RFGTI DK FI F + ATHA+ M+
Sbjct: 223 LIEKAFSRFGTIQDIRSFKDKGYAFIRFSTKEAATHAIEAMH 264
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 87/185 (47%), Gaps = 17/185 (9%)
Query: 125 EKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAA 184
E+ Y K ++V NL +V E+ L + F + G++ KI+R+ N + F++F +++AA
Sbjct: 5 EENYPK-TLYVGNLDVSVTEDLLCTLFSQIGSVKGCKIIREPNNDP--YAFVEFVNHQAA 61
Query: 185 EKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSE 244
A+I MN R + V+ A PG + P + + IFV +L I
Sbjct: 62 STALIAMNKRHVLEKEIKVNWA-TSPGNQ-------PKQDTSSHHHIFVGDLSPEIEMHT 113
Query: 245 FEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTL 298
E FA FG I++ +V D K F+ F+ A A+ MNG ++ ++
Sbjct: 114 LREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAESAIHAMNGQWLGNRSIRTNW 173
Query: 299 SGTKP 303
S KP
Sbjct: 174 STRKP 178
>gi|255089439|ref|XP_002506641.1| predicted protein [Micromonas sp. RCC299]
gi|226521914|gb|ACO67899.1| predicted protein [Micromonas sp. RCC299]
Length = 285
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 72/281 (25%), Positives = 126/281 (44%), Gaps = 23/281 (8%)
Query: 35 NELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVE 94
N L+V N+ S L F GT+ V + + SRG+ I+ ++ EA+ A
Sbjct: 7 NRLYVGNIPWSTTVDELRGIFSGCGTITLVDIPTGRQGRSRGYGIVEYSNVNEAQVAIQT 66
Query: 95 MNGHLIGSKPVIITFVELKPGQRSKP---------VGPEEKQYKKDKVFVKNLVETVDEE 145
++GH +G + IT E K +S P +G + + +V NL +EE
Sbjct: 67 LDGHTLGDRN--ITVREDKAPTKSAPSKSGGNRSTIG-DTPAADGCRCYVGNLAWETNEE 123
Query: 146 ELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL 205
L +H + G +++ ++ + G+SKG+G + F + AA AI ++ +Q S V L
Sbjct: 124 SLIAHCSQVGTVVQAEVAKQPGGRSKGWGLVDFETPDAANSAINTLHNSDLQGRSIIVRL 183
Query: 206 AEIVPG--KKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS- 262
E G K P P + + +I V NLP + + + ++F + GT+ + V
Sbjct: 184 -ERAGGANKSGGPNAGRP--EASSGLQIVVRNLPWSTTSEDLRQVFQQVGTVIKAEAVCH 240
Query: 263 -----DKHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTL 298
K G + F + A A+ NG + +P+++ L
Sbjct: 241 ADTGRSKGWGTVLFETREQAQAAIQGFNGVELEHRPMQIKL 281
>gi|296422065|ref|XP_002840583.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295636802|emb|CAZ84774.1| unnamed protein product [Tuber melanosporum]
Length = 559
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/166 (36%), Positives = 95/166 (57%), Gaps = 7/166 (4%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L V +L +VD L NEF++FG + VRV ++ + S+GF + + T AKKA EM
Sbjct: 304 LFVGSLSWNVDEGWLRNEFEQFGEIAAVRVVTDRESGRSKGFGYVEYTTNEAAKKALEEM 363
Query: 96 NGHLIGSKPVIITFVELKP----GQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHF 151
G I + + + F +P RS+ G ++K + + VFV NL DE+ +++ F
Sbjct: 364 KGKDIDGRTINVDFSAPRPENPRQDRSRLYG-DQKSPESETVFVANLSFEADEQIVQTEF 422
Query: 152 IKFGNIIEVKIVRD-ENGKSKGFGFIQFFSYKAAEKAIIEMNGRMI 196
FGNI+ ++I D E+G+ KGF +IQ+ +A KA+ EMNG ++
Sbjct: 423 EGFGNIVGLRIPTDPESGQPKGFCYIQYDRVDSARKAVEEMNGALV 468
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 88/180 (48%), Gaps = 18/180 (10%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRD-ENGKSKGFGFIQFFSYKAAEKAIIEM 191
+FV +L VDE L++ F +FG I V++V D E+G+SKGFG++++ + +AA+KA+ EM
Sbjct: 304 LFVGSLSWNVDEGWLRNEFEQFGEIAAVRVVTDRESGRSKGFGYVEYTTNEAAKKALEEM 363
Query: 192 NGRMIQHNSTFVSLAEIVP------GKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEF 245
G+ I + V + P +++ K P + +FVANL +
Sbjct: 364 KGKDIDGRTINVDFSAPRPENPRQDRSRLYGDQKSPESE-----TVFVANLSFEADEQIV 418
Query: 246 EELFARFGTITSSSLVSDKHIG------FIEFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299
+ F FG I + +D G +I++ A AV MNG + + ++ S
Sbjct: 419 QTEFEGFGNIVGLRIPTDPESGQPKGFCYIQYDRVDSARKAVEEMNGALVAGRAIRTDFS 478
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKKARVEM 95
+ V NL D Q + EF+ FG + +R+ + ++ + +GF I ++ A+KA EM
Sbjct: 404 VFVANLSFEADEQIVQTEFEGFGNIVGLRIPTDPESGQPKGFCYIQYDRVDSARKAVEEM 463
Query: 96 NGHLIGSKPVIITF 109
NG L+ + + F
Sbjct: 464 NGALVAGRAIRTDF 477
>gi|221104585|ref|XP_002169901.1| PREDICTED: ELAV-like protein 2-like [Hydra magnipapillata]
Length = 339
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 77/306 (25%), Positives = 134/306 (43%), Gaps = 37/306 (12%)
Query: 23 RSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIV 81
+ +E+++ + L VN L + + F + G + + ++ RN +S G+A I
Sbjct: 2 QQQQEDDEFDVKRNLIVNYLPQTFTQDEVSQMFARIGPVSNCKLIRNYTTGQSLGYAFIE 61
Query: 82 FNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVET 141
+ T A++A +++G + K + +++ P + K V+V L
Sbjct: 62 YPTAQLAEEAINQLDGMTLQDKKLKVSYAR-----------PSSTEIKNSNVYVAGLPSW 110
Query: 142 VDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNST 201
VDE+ L S F FG+II KI+ D KS+G GF+++ AEKAI M G+++ ++T
Sbjct: 111 VDEDRLLSLFAPFGSIITHKILTDAASKSRGVGFVRYSLKSDAEKAIESMAGKVLPDSTT 170
Query: 202 FVSLAEIVPGKKVFPKVKPPLLQP-----------------ARKNKIFVANLPSNINNSE 244
+ + +P QP + N ++V L + +
Sbjct: 171 ALIVKLAIPPASKQLAAAAAAAQPLNSIAGVPKQIVQYNPMSLSNPVYVYGLQPHHSELT 230
Query: 245 FEELFARFGTITSSSLVSD--------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
ELFA FG I + L+ D K GF+ F A A++TM+ H + K L+V
Sbjct: 231 LYELFAPFGGILNVKLIRDNAKPEKPCKGYGFVNFRKQDEALAAIATMHNHPYDGKILQV 290
Query: 297 TLSGTK 302
+ K
Sbjct: 291 SFKQNK 296
>gi|111226286|ref|XP_001134510.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
gi|122096694|sp|Q1ZXC2.1|PAP1B_DICDI RecName: Full=Polyadenylate-binding protein 1-B; Short=PABP-1-B;
Short=Poly(A)-binding protein, cytoplasmic 1-B
gi|90970453|gb|EAS66827.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
Length = 814
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 81/285 (28%), Positives = 132/285 (46%), Gaps = 37/285 (12%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ V NLE VDN L + F FG + +V K S+G+ + F T A+KA ++N
Sbjct: 276 IFVKNLEKGVDNAMLYDTFSSFGNILSCKVEFEKGI-SKGYGYVHFETNDSAEKAIEKVN 334
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFI-KFG 155
G LI KP+ + + V E+ ++KVF +N E++ E L+ +FG
Sbjct: 335 GTLILGKPINV----------ERFVSKVERYKVENKVFFRNADESITIEILQQELSNRFG 384
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEM----------------NGRMIQHN 199
I + D NGKSKG G ++F + + A+K + E NG I+ N
Sbjct: 385 EIESCILKNDANGKSKGLGLVEFKNQEDAQKILTESGALIISTIDGTTTVSSNGGTIEIN 444
Query: 200 STFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSS 259
+++ I + F + + + +F+ N+ +I+ +E FA+ GTI
Sbjct: 445 GKPITIDRIKSKVERFTEYRKKTTDLS----LFINNIDESIDRDLIKEEFAKHGTIIGIK 500
Query: 260 LVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299
+V D K GFI F + A A+ ++NG F SK ++V+ S
Sbjct: 501 IVQDENARNKGFGFISFSEIQEAQKALDSLNGFTFGSKQIQVSFS 545
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 92/298 (30%), Positives = 140/298 (46%), Gaps = 39/298 (13%)
Query: 37 LHVNNLEPSVDNQALINE-FKKFG--TLRDVRVARNKND-ESRGFAIIVFNTPAEAKKAR 92
L+V +L V N+ ++NE F K G + + V R+ N S G+A + F +A++A
Sbjct: 186 LYVGDLAADV-NEIILNELFSKVGRNAIASIHVCRDSNTLRSLGYAYVNFFNNHDAERAL 244
Query: 93 VEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFI 152
+N L+ KP I + P +R VG +FVKNL + VD L F
Sbjct: 245 DTLNYTLVHGKPCRIMWSYRDPTKRKTNVG---------NIFVKNLEKGVDNAMLYDTFS 295
Query: 153 KFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGK 212
FGNI+ K V E G SKG+G++ F + +AEKAI ++NG +I L + + +
Sbjct: 296 SFGNILSCK-VEFEKGISKGYGYVHFETNDSAEKAIEKVNGTLI--------LGKPINVE 346
Query: 213 KVFPKVKPPLLQPARKNKIFVANLPSNINNSEF-EELFARFGTITSSSLVSD-----KHI 266
+ KV+ ++ NK+F N +I +EL RFG I S L +D K +
Sbjct: 347 RFVSKVERYKVE----NKVFFRNADESITIEILQQELSNRFGEIESCILKNDANGKSKGL 402
Query: 267 GFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKPGVSITNPTKAPKKPAYIDEVK 324
G +EF + A + T +G + S T+ GT S + KP ID +K
Sbjct: 403 GLVEFKNQEDA-QKILTESGALIIS-----TIDGTTTVSSNGGTIEINGKPITIDRIK 454
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 89/176 (50%), Gaps = 17/176 (9%)
Query: 34 ENELHVNNLEPSVDNQALINEFK-KFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKAR 92
EN++ N + S+ + L E +FG + + + N +S+G ++ F +A+K
Sbjct: 358 ENKVFFRNADESITIEILQQELSNRFGEIESCILKNDANGKSKGLGLVEFKNQEDAQKIL 417
Query: 93 VEMNGHLIGSKPVIITFVELKPGQ---RSKPVGPEE--------KQYKKD----KVFVKN 137
E +G LI S T V G KP+ + +Y+K +F+ N
Sbjct: 418 TE-SGALIISTIDGTTTVSSNGGTIEINGKPITIDRIKSKVERFTEYRKKTTDLSLFINN 476
Query: 138 LVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNG 193
+ E++D + +K F K G II +KIV+DEN ++KGFGFI F + A+KA+ +NG
Sbjct: 477 IDESIDRDLIKEEFAKHGTIIGIKIVQDENARNKGFGFISFSEIQEAQKALDSLNG 532
>gi|323448247|gb|EGB04148.1| hypothetical protein AURANDRAFT_70409 [Aureococcus anophagefferens]
Length = 616
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 70/256 (27%), Positives = 112/256 (43%), Gaps = 26/256 (10%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
+ L+V +L L F G + +RV R+ S G+A + F+ ++A++
Sbjct: 10 FHSASLYVGDLATDASEGLLFEIFNTVGPVASIRVCRDAVTRRSLGYAYVNFHNVSDAER 69
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN LI SKP I + + P R VG VFVKNL ++D + L
Sbjct: 70 ALDTMNYTLIKSKPCRIMWSQRDPTLRKSGVG---------NVFVKNLDSSIDHKALFDT 120
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVP 210
F FGNI+ K+ DE G+S+G+G++ + S AA AI ++N I +V
Sbjct: 121 FSLFGNILSCKVATDEAGRSQGYGYVHYESEDAATDAINKINSMTICDKEVYVGH----- 175
Query: 211 GKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKHIGFIE 270
F + Q N ++V N P++ + + + F F S+ G++
Sbjct: 176 ----FVRRTERSGQSDWTN-LYVKNFPADWDEATLRKAFEMFAAADGSAF------GWVN 224
Query: 271 FIMPKHATHAVSTMNG 286
F A A+ +NG
Sbjct: 225 FEGHDAAVAAMDALNG 240
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 76/291 (26%), Positives = 126/291 (43%), Gaps = 51/291 (17%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
V NL+ S+D++AL + F FG + +VA ++ S+G+ + + + A A ++N
Sbjct: 105 VKNLDSSIDHKALFDTFSLFGNILSCKVATDEAGRSQGYGYVHYESEDAATDAINKINSM 164
Query: 99 LIGSKPVIIT-FVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNI 157
I K V + FV +R++ G Q ++VKN DE L+ F F
Sbjct: 165 TICDKEVYVGHFV-----RRTERSG----QSDWTNLYVKNFPADWDEATLRKAFEMFAA- 214
Query: 158 IEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNG--RMIQHNST---------FVSLA 206
FG++ F + AA A+ +NG + H T FV A
Sbjct: 215 ----------ADGSAFGWVNFEGHDAAVAAMDALNGASELPGHAGTAPITLKSPLFVGRA 264
Query: 207 EIVPGKKV---------FPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITS 257
+ KKV F K ++ + +FV NL +++ + E F +GTITS
Sbjct: 265 Q----KKVERERELKAKFDAAKIERIKKYQGVNLFVKNLDDALDDDQLREHFTEYGTITS 320
Query: 258 SSLV------SDKHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
+ ++ + + GF+ F P+ A AV+ MN + KP+ V L+ K
Sbjct: 321 ARVMREPATGTSRGFGFVCFSSPEEAAKAVTEMNNKLVLGKPIFVALAQRK 371
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 51/94 (54%), Gaps = 1/94 (1%)
Query: 27 ENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTP 85
E K Y+ L V NL+ ++D+ L F ++GT+ RV R SRGF + F++P
Sbjct: 284 ERIKKYQGVNLFVKNLDDALDDDQLREHFTEYGTITSARVMREPATGTSRGFGFVCFSSP 343
Query: 86 AEAKKARVEMNGHLIGSKPVIITFVELKPGQRSK 119
EA KA EMN L+ KP+ + + K +R++
Sbjct: 344 EEAAKAVTEMNNKLVLGKPIFVALAQRKEVRRAQ 377
>gi|14906166|gb|AAK72507.1| putative polyadenylate-binding protein [Aedes aegypti]
Length = 289
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 101/187 (54%), Gaps = 11/187 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
++V + ++++ L F+K+GT+ RV K+ + RGF + F P A+ A E+N
Sbjct: 9 VYVKDFGDELNDETLKEMFEKYGTITSHRVM-IKDGKGRGFGFVAFENPESAEHAVQELN 67
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKV--------FVKNLVETVDEEELK 148
G +G ++ K +R + +Q K +++ +VKNL +++D+E L+
Sbjct: 68 GKELGEGKILYVGRAQKKNERQMELKRRFEQLKMERLTRYQGVNLYVKNLDDSIDDERLR 127
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSY-KAAEKAIIEMNGRMIQHNSTFVSLAE 207
F FG I K++ +E G+SKGFGF+ F + + A KA+ EMNGR++ +V+LA+
Sbjct: 128 KEFSPFGTITSAKVMLEE-GRSKGFGFVLFSQHAEEATKAVTEMNGRIVGSKPLYVALAQ 186
Query: 208 IVPGKKV 214
+K
Sbjct: 187 RTEDRKA 193
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 62/205 (30%), Positives = 109/205 (53%), Gaps = 18/205 (8%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMN 192
V+VK+ + +++E LK F K+G I +++ ++GK +GFGF+ F + ++AE A+ E+N
Sbjct: 9 VYVKDFGDELNDETLKEMFEKYGTITSHRVM-IKDGKGRGFGFVAFENPESAEHAVQELN 67
Query: 193 GRMIQHNS-TFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFE 246
G+ + +V A+ + K+ F ++K L + ++V NL +I++
Sbjct: 68 GKELGEGKILYVGRAQKKNERQMELKRRFEQLKMERLTRYQGVNLYVKNLDDSIDDERLR 127
Query: 247 ELFARFGTITSSSLVSD----KHIGFIEFIM-PKHATHAVSTMNGHVFKSKPLKVTLSGT 301
+ F+ FGTITS+ ++ + K GF+ F + AT AV+ MNG + SKPL V L+
Sbjct: 128 KEFSPFGTITSAKVMLEEGRSKGFGFVLFSQHAEEATKAVTEMNGRIVGSKPLYVALA-- 185
Query: 302 KPGVSITNPTKAPKKPAYIDEVKNV 326
T KA Y+ + N+
Sbjct: 186 ----QRTEDRKAHLASQYMQRMANM 206
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 49/81 (60%), Gaps = 2/81 (2%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPA-EAKK 90
Y+ L+V NL+ S+D++ L EF FGT+ +V + S+GF ++F+ A EA K
Sbjct: 107 YQGVNLYVKNLDDSIDDERLRKEFSPFGTITSAKVMLEEG-RSKGFGFVLFSQHAEEATK 165
Query: 91 ARVEMNGHLIGSKPVIITFVE 111
A EMNG ++GSKP+ + +
Sbjct: 166 AVTEMNGRIVGSKPLYVALAQ 186
>gi|146101854|ref|XP_001469222.1| poly(A)-binding protein 2 [Leishmania infantum JPCM5]
gi|398023673|ref|XP_003864998.1| poly(a) binding protein, putative [Leishmania donovani]
gi|134073591|emb|CAM72325.1| poly(A)-binding protein 2 [Leishmania infantum JPCM5]
gi|322503234|emb|CBZ38319.1| poly(a) binding protein, putative [Leishmania donovani]
Length = 585
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/257 (25%), Positives = 126/257 (49%), Gaps = 27/257 (10%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
+ V L+P + Q L + F + G + VRV + +S G+ + F PA+A+KA ++
Sbjct: 10 IWVGGLDPDLQEQKLYDYFVRIGPVTSVRVCVDSATQKSLGYGYVNFQDPADAEKA-LDQ 68
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
G +GS+ + I ++ P +R V + + VK L ++VD LK F KFG
Sbjct: 69 AGSKLGSRYLRIAKIQRDPSKRRSGV---------NNILVKKLPKSVDTYALKEMFSKFG 119
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
+ + + DE G+S+G+ I F ++A A+ EM+G + + V ++
Sbjct: 120 RLTAIGLACDEKGESRGYARISFEREESAVDAVREMDGMEMDGQAIVV--------ERYQ 171
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSS------SLVSDKHIGFI 269
+ + LL+ + ++V NL + + + FA++G ++S+ ++ S+ +G++
Sbjct: 172 AQHRDELLK--QFTNLYVKNLDPAVTDEKLRAFFAKYGEVSSAKVRDLGAVQSEAGLGYV 229
Query: 270 EFIMPKHATHAVSTMNG 286
F + A AV +NG
Sbjct: 230 AFQKHEDAARAVEELNG 246
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 74/280 (26%), Positives = 128/280 (45%), Gaps = 24/280 (8%)
Query: 35 NELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVE 94
N + V L SVD AL F KFG L + +A ++ ESRG+A I F A A E
Sbjct: 95 NNILVKKLPKSVDTYALKEMFSKFGRLTAIGLACDEKGESRGYARISFEREESAVDAVRE 154
Query: 95 MNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKF 154
M+G + + +++ +R + +E + ++VKNL V +E+L++ F K+
Sbjct: 155 MDGMEMDGQAIVV--------ERYQAQHRDELLKQFTNLYVKNLDPAVTDEKLRAFFAKY 206
Query: 155 GNIIEVKIVRDENG--KSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL------A 206
G + K VRD G G++ F ++ A +A+ E+NG+ + + L +
Sbjct: 207 GEVSSAK-VRDLGAVQSEAGLGYVAFQKHEDAARAVEELNGKECEISKAGSPLDVSRFRS 265
Query: 207 EIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKH- 265
+ + + Q ++ ++V + + EELF R+G S +++ DK
Sbjct: 266 REERQRDRERQRRERAQQHSKYPNLYVKGFDDTVTSERLEELFQRYGETVSVTVMMDKET 325
Query: 266 -----IGFIEFIMPKHATHAVSTMNGHVFKS-KPLKVTLS 299
GF+ A+ A+ +NG F S +PL VT +
Sbjct: 326 GVSRCFGFVSMKDQNAASQAIQELNGSTFLSPRPLFVTYA 365
>gi|401429856|ref|XP_003879410.1| putative poly(a) binding protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322495660|emb|CBZ30966.1| putative poly(a) binding protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 594
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/257 (25%), Positives = 126/257 (49%), Gaps = 27/257 (10%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
+ V L+P + Q L + F + G + VRV + +S G+ + F PA+A+KA ++
Sbjct: 10 IWVGGLDPDLQEQKLYDYFVRIGPVTSVRVCVDSATQKSLGYGYVNFQDPADAEKA-LDQ 68
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
G +GS+ + I ++ P +R V + + VK L ++VD LK F KFG
Sbjct: 69 AGSKLGSRYLRIAKIQRDPSKRRSGV---------NNILVKKLPKSVDTYALKEMFSKFG 119
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
+ + + DE G+S+G+ I F ++A A+ EM+G + + V ++
Sbjct: 120 RLTAIGLACDEKGESRGYARISFEREESAVDAVREMDGMEMDGQAIVV--------ERYQ 171
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSS------SLVSDKHIGFI 269
+ + LL+ + ++V NL + + + FA++G ++S+ ++ S+ +G++
Sbjct: 172 AQHRDELLK--QFTNLYVKNLDPAVTDEKLRAFFAKYGEVSSAKVRDLGAVQSEAGLGYV 229
Query: 270 EFIMPKHATHAVSTMNG 286
F + A AV +NG
Sbjct: 230 AFQKHEDAARAVEELNG 246
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 74/280 (26%), Positives = 127/280 (45%), Gaps = 24/280 (8%)
Query: 35 NELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVE 94
N + V L SVD AL F KFG L + +A ++ ESRG+A I F A A E
Sbjct: 95 NNILVKKLPKSVDTYALKEMFSKFGRLTAIGLACDEKGESRGYARISFEREESAVDAVRE 154
Query: 95 MNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKF 154
M+G + + +++ +R + +E + ++VKNL V +E+L++ F K+
Sbjct: 155 MDGMEMDGQAIVV--------ERYQAQHRDELLKQFTNLYVKNLDPAVTDEKLRAFFAKY 206
Query: 155 GNIIEVKIVRDENG--KSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL------A 206
G + K VRD G G++ F ++ A +A+ E+NG+ + L +
Sbjct: 207 GEVSSAK-VRDLGAVQSEAGLGYVAFQKHEDAARAVEELNGKECEIAKAGSPLDVSRFRS 265
Query: 207 EIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKH- 265
+ + + Q ++ ++V + + EELF R+G S +++ DK
Sbjct: 266 REERQRDRERQRRERAQQHSKYPNLYVKGFDDTVTSERLEELFQRYGETVSVTVMMDKET 325
Query: 266 -----IGFIEFIMPKHATHAVSTMNGHVFKS-KPLKVTLS 299
GF+ A+ A+ +NG F S +PL VT +
Sbjct: 326 GVSRCFGFVSMKDQNAASQAIQELNGSTFLSPRPLFVTYA 365
>gi|32564506|ref|NP_871980.1| Protein TIAR-1, isoform f [Caenorhabditis elegans]
gi|373219014|emb|CCD65019.1| Protein TIAR-1, isoform f [Caenorhabditis elegans]
Length = 295
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 90/168 (53%), Gaps = 16/168 (9%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKND-ESRGFAIIVFNTPAEAKKARVEMNG 97
V +L VDNQ L F+ FG + D +V R+ N +S+G+ + + EA++A +MNG
Sbjct: 26 VGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNG 85
Query: 98 HLIGSKPVIITFVELKPGQRSKPVGPEEKQYKK---------DKVFVKNLVETVDEEELK 148
+G + + + KPG + KP EK Y + V+V N+ ++ E+E++
Sbjct: 86 QWLGRRTIRTNWATRKPGDQEKPSHYNEKSYDEIYNQTSGDNTSVYVGNIA-SLTEDEIR 144
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMI 196
F FG I EV+I K +G+ F++F + AA KAI++MN + +
Sbjct: 145 QGFASFGRITEVRIF-----KMQGYAFVKFDNKDAAAKAIVQMNNQDV 187
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 94/201 (46%), Gaps = 19/201 (9%)
Query: 121 VGPEEKQYKKDK-----VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENG-KSKGFG 174
V P ++Q K D VFV +L VD ++L+ F FG++ + K++RD N KSKG+G
Sbjct: 7 VEPGQQQSKIDTTRHFHVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYG 66
Query: 175 FIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFP------KVKPPLLQPARK 228
F+ + + AE+AI +MNG+ + + + A PG + P Q +
Sbjct: 67 FVSYPKREEAERAIEQMNGQWLGRRTIRTNWATRKPGDQEKPSHYNEKSYDEIYNQTSGD 126
Query: 229 N-KIFVANLPSNINNSEFEELFARFGTITSSSLVSDKHIGFIEFIMPKHATHAVSTMN-- 285
N ++V N+ S + E + FA FG IT + + F++F A A+ MN
Sbjct: 127 NTSVYVGNIAS-LTEDEIRQGFASFGRITEVRIFKMQGYAFVKFDNKDAAAKAIVQMNNQ 185
Query: 286 ---GHVFKSKPLKVTLSGTKP 303
G + + K +G P
Sbjct: 186 DVGGQLVRCSWGKTGDTGKTP 206
>gi|289740845|gb|ADD19170.1| polyadenylate-binding protein [Glossina morsitans morsitans]
Length = 321
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 99/171 (57%), Gaps = 8/171 (4%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+++ NLE S+DN+A+ + F FG + + VA++++ SRG+ + F++ A+ A ++N
Sbjct: 130 IYIKNLERSIDNKAVYDTFSAFGNILNCNVAKDEHGNSRGYGFVQFDSEEAARAAIEKVN 189
Query: 97 GHLIGSKPV-IITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
G L S+ V ++ ++ + ++ K Q++ ++VKN E E+ +K F +G
Sbjct: 190 GILCNSQKVHVVKYIPRRDREQEKAT-----QFR--NLYVKNFNEDFSEQNMKEMFEPYG 242
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLA 206
I KI+ DE G+SK FGF+ F + ++A A+I +NG+ + +V+ A
Sbjct: 243 RITSHKIMTDEEGRSKRFGFVAFENPQSALAAVIALNGKQLGDKYLYVARA 293
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 94/176 (53%), Gaps = 13/176 (7%)
Query: 132 KVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEM 191
K+++KNL ++D + + F FGNI+ + +DE+G S+G+GF+QF S +AA AI ++
Sbjct: 129 KIYIKNLERSIDNKAVYDTFSAFGNILNCNVAKDEHGNSRGYGFVQFDSEEAARAAIEKV 188
Query: 192 NGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFAR 251
NG + NS V + + +P ++ + K + ++V N + + +E+F
Sbjct: 189 NGILC--NSQKVHVVKYIP-RRDREQEKATQFR-----NLYVKNFNEDFSEQNMKEMFEP 240
Query: 252 FGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
+G ITS +++D K GF+ F P+ A AV +NG K L V + +K
Sbjct: 241 YGRITSHKIMTDEEGRSKRFGFVAFENPQSALAAVIALNGKQLGDKYLYVARALSK 296
>gi|32564504|ref|NP_495123.2| Protein TIAR-1, isoform e [Caenorhabditis elegans]
gi|373219013|emb|CCD65018.1| Protein TIAR-1, isoform e [Caenorhabditis elegans]
Length = 305
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 90/168 (53%), Gaps = 16/168 (9%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKND-ESRGFAIIVFNTPAEAKKARVEMNG 97
V +L VDNQ L F+ FG + D +V R+ N +S+G+ + + EA++A +MNG
Sbjct: 36 VGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNG 95
Query: 98 HLIGSKPVIITFVELKPGQRSKPVGPEEKQYKK---------DKVFVKNLVETVDEEELK 148
+G + + + KPG + KP EK Y + V+V N+ ++ E+E++
Sbjct: 96 QWLGRRTIRTNWATRKPGDQEKPSHYNEKSYDEIYNQTSGDNTSVYVGNIA-SLTEDEIR 154
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMI 196
F FG I EV+I K +G+ F++F + AA KAI++MN + +
Sbjct: 155 QGFASFGRITEVRIF-----KMQGYAFVKFDNKDAAAKAIVQMNNQDV 197
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 59/222 (26%), Positives = 103/222 (46%), Gaps = 19/222 (8%)
Query: 95 MNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKF 154
MN L+ + + + + ++PGQ+ + + VFV +L VD ++L+ F F
Sbjct: 1 MNKRLLLDREMKVNWA-VEPGQQQSKIDTTRHFH----VFVGDLSSEVDNQKLREAFQPF 55
Query: 155 GNIIEVKIVRDENG-KSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKK 213
G++ + K++RD N KSKG+GF+ + + AE+AI +MNG+ + + + A PG +
Sbjct: 56 GDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATRKPGDQ 115
Query: 214 VFP------KVKPPLLQPARKN-KIFVANLPSNINNSEFEELFARFGTITSSSLVSDKHI 266
P Q + N ++V N+ S + E + FA FG IT + +
Sbjct: 116 EKPSHYNEKSYDEIYNQTSGDNTSVYVGNIAS-LTEDEIRQGFASFGRITEVRIFKMQGY 174
Query: 267 GFIEFIMPKHATHAVSTMN-----GHVFKSKPLKVTLSGTKP 303
F++F A A+ MN G + + K +G P
Sbjct: 175 AFVKFDNKDAAAKAIVQMNNQDVGGQLVRCSWGKTGDTGKTP 216
>gi|17531963|ref|NP_495120.1| Protein TIAR-1, isoform b [Caenorhabditis elegans]
gi|373219011|emb|CCD65016.1| Protein TIAR-1, isoform b [Caenorhabditis elegans]
Length = 376
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 90/168 (53%), Gaps = 16/168 (9%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKND-ESRGFAIIVFNTPAEAKKARVEMNG 97
V +L VDNQ L F+ FG + D +V R+ N +S+G+ + + EA++A +MNG
Sbjct: 107 VGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNG 166
Query: 98 HLIGSKPVIITFVELKPGQRSKPVGPEEKQYKK---------DKVFVKNLVETVDEEELK 148
+G + + + KPG + KP EK Y + V+V N+ ++ E+E++
Sbjct: 167 QWLGRRTIRTNWATRKPGDQEKPSHYNEKSYDEIYNQTSGDNTSVYVGNIA-SLTEDEIR 225
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMI 196
F FG I EV+I K +G+ F++F + AA KAI++MN + +
Sbjct: 226 QGFASFGRITEVRIF-----KMQGYAFVKFDNKDAAAKAIVQMNNQDV 268
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 94/201 (46%), Gaps = 19/201 (9%)
Query: 121 VGPEEKQYKKDK-----VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENG-KSKGFG 174
V P ++Q K D VFV +L VD ++L+ F FG++ + K++RD N KSKG+G
Sbjct: 88 VEPGQQQSKIDTTRHFHVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYG 147
Query: 175 FIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFP------KVKPPLLQPARK 228
F+ + + AE+AI +MNG+ + + + A PG + P Q +
Sbjct: 148 FVSYPKREEAERAIEQMNGQWLGRRTIRTNWATRKPGDQEKPSHYNEKSYDEIYNQTSGD 207
Query: 229 N-KIFVANLPSNINNSEFEELFARFGTITSSSLVSDKHIGFIEFIMPKHATHAVSTMN-- 285
N ++V N+ S + E + FA FG IT + + F++F A A+ MN
Sbjct: 208 NTSVYVGNIAS-LTEDEIRQGFASFGRITEVRIFKMQGYAFVKFDNKDAAAKAIVQMNNQ 266
Query: 286 ---GHVFKSKPLKVTLSGTKP 303
G + + K +G P
Sbjct: 267 DVGGQLVRCSWGKTGDTGKTP 287
>gi|7446337|pir||T15542 hypothetical protein C18A3.5 - Caenorhabditis elegans
Length = 448
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 90/168 (53%), Gaps = 16/168 (9%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKND-ESRGFAIIVFNTPAEAKKARVEMNG 97
V +L VDNQ L F+ FG + D +V R+ N +S+G+ + + EA++A +MNG
Sbjct: 179 VGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNG 238
Query: 98 HLIGSKPVIITFVELKPGQRSKPVGPEEKQYKK---------DKVFVKNLVETVDEEELK 148
+G + + + KPG + KP EK Y + V+V N+ ++ E+E++
Sbjct: 239 QWLGRRTIRTNWATRKPGDQEKPSHYNEKSYDEIYNQTSGDNTSVYVGNIA-SLTEDEIR 297
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMI 196
F FG I EV+I K +G+ F++F + AA KAI++MN + +
Sbjct: 298 QGFASFGRITEVRIF-----KMQGYAFVKFDNKDAAAKAIVQMNNQDV 340
Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 63/240 (26%), Positives = 112/240 (46%), Gaps = 19/240 (7%)
Query: 77 FAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVK 136
+A + F+ +A +A MN L+ + + + + ++PGQ+ + + VFV
Sbjct: 126 YAFVEFSDHGQASQALQTMNKRLLLDREMKVNWA-VEPGQQQSKIDTTRHFH----VFVG 180
Query: 137 NLVETVDEEELKSHFIKFGNIIEVKIVRDENG-KSKGFGFIQFFSYKAAEKAIIEMNGRM 195
+L VD ++L+ F FG++ + K++RD N KSKG+GF+ + + AE+AI +MNG+
Sbjct: 181 DLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQW 240
Query: 196 IQHNSTFVSLAEIVPGKKVFP------KVKPPLLQPARKN-KIFVANLPSNINNSEFEEL 248
+ + + A PG + P Q + N ++V N+ S + E +
Sbjct: 241 LGRRTIRTNWATRKPGDQEKPSHYNEKSYDEIYNQTSGDNTSVYVGNIAS-LTEDEIRQG 299
Query: 249 FARFGTITSSSLVSDKHIGFIEFIMPKHATHAVSTMN-----GHVFKSKPLKVTLSGTKP 303
FA FG IT + + F++F A A+ MN G + + K +G P
Sbjct: 300 FASFGRITEVRIFKMQGYAFVKFDNKDAAAKAIVQMNNQDVGGQLVRCSWGKTGDTGKTP 359
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 45/216 (20%), Positives = 86/216 (39%), Gaps = 51/216 (23%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRD--------------------------- 165
++V NL TV E+ + + F + G++ + K++ D
Sbjct: 48 LYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDVSFSLWNKTNLYRKLLLARGIGVPGYK 107
Query: 166 -----------ENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKV 214
E G + + F++F + A +A+ MN R++ V+ A V
Sbjct: 108 CTRRQPIHTDTETGSNDPYAFVEFSDHGQASQALQTMNKRLLLDREMKVNWA-------V 160
Query: 215 FPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGF 268
P + + R +FV +L S ++N + E F FG ++ + ++ D K GF
Sbjct: 161 EPGQQQSKIDTTRHFHVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGF 220
Query: 269 IEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKPG 304
+ + + A A+ MNG + ++ + KPG
Sbjct: 221 VSYPKREEAERAIEQMNGQWLGRRTIRTNWATRKPG 256
>gi|17531965|ref|NP_495121.1| Protein TIAR-1, isoform a [Caenorhabditis elegans]
gi|373219010|emb|CCD65015.1| Protein TIAR-1, isoform a [Caenorhabditis elegans]
Length = 408
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 90/168 (53%), Gaps = 16/168 (9%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKND-ESRGFAIIVFNTPAEAKKARVEMNG 97
V +L VDNQ L F+ FG + D +V R+ N +S+G+ + + EA++A +MNG
Sbjct: 139 VGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNG 198
Query: 98 HLIGSKPVIITFVELKPGQRSKPVGPEEKQYKK---------DKVFVKNLVETVDEEELK 148
+G + + + KPG + KP EK Y + V+V N+ ++ E+E++
Sbjct: 199 QWLGRRTIRTNWATRKPGDQEKPSHYNEKSYDEIYNQTSGDNTSVYVGNIA-SLTEDEIR 257
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMI 196
F FG I EV+I K +G+ F++F + AA KAI++MN + +
Sbjct: 258 QGFASFGRITEVRIF-----KMQGYAFVKFDNKDAAAKAIVQMNNQDV 300
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 71/280 (25%), Positives = 132/280 (47%), Gaps = 21/280 (7%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L+V NL+ +V + F + G++ +V + +++ +A + F+ +A +A MN
Sbjct: 48 LYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDGSNDP--YAFVEFSDHGQASQALQTMN 105
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
L+ + + + + ++PGQ+ + + VFV +L VD ++L+ F FG+
Sbjct: 106 KRLLLDREMKVNWA-VEPGQQQSKIDTTRHFH----VFVGDLSSEVDNQKLREAFQPFGD 160
Query: 157 IIEVKIVRDENG-KSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
+ + K++RD N KSKG+GF+ + + AE+AI +MNG+ + + + A PG +
Sbjct: 161 VSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATRKPGDQEK 220
Query: 216 P------KVKPPLLQPARKN-KIFVANLPSNINNSEFEELFARFGTITSSSLVSDKHIGF 268
P Q + N ++V N+ S + E + FA FG IT + + F
Sbjct: 221 PSHYNEKSYDEIYNQTSGDNTSVYVGNIAS-LTEDEIRQGFASFGRITEVRIFKMQGYAF 279
Query: 269 IEFIMPKHATHAVSTMN-----GHVFKSKPLKVTLSGTKP 303
++F A A+ MN G + + K +G P
Sbjct: 280 VKFDNKDAAAKAIVQMNNQDVGGQLVRCSWGKTGDTGKTP 319
>gi|341900388|gb|EGT56323.1| CBN-TIAR-1 protein [Caenorhabditis brenneri]
Length = 399
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/273 (24%), Positives = 133/273 (48%), Gaps = 16/273 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L+V NL+P+V + F + G++ +V + ++ +A + F+ A+A +A MN
Sbjct: 44 LYVGNLDPTVSEDFVATLFNQIGSVTKTKVIFDGANDP--YAFVEFSDHAQASQALQTMN 101
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
L+ + + + + ++PGQ+ + + VFV +L VD ++L+ F FG+
Sbjct: 102 KRLLLDREMKVNWA-VEPGQQPSKIDTTRHFH----VFVGDLSSEVDNQKLREAFQPFGD 156
Query: 157 IIEVKIVRDENG-KSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
+ + K++RD N KSKG+GF+ + + AE+AI +MNG+ + + + A PG +
Sbjct: 157 VSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATRKPGDQEK 216
Query: 216 P------KVKPPLLQPARKN-KIFVANLPSNINNSEFEELFARFGTITSSSLVSDKHIGF 268
P Q + N ++V N+ +N++ + + FA +G I+ + + F
Sbjct: 217 PVHYNEKSYDEIYNQTSGDNTSVYVGNI-ANLSEEDIRQAFASYGRISEVRIFKMQGYAF 275
Query: 269 IEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGT 301
++F A A+ MN + ++ + T
Sbjct: 276 VKFDNKDAAAKAIVQMNNQEVGGQLVRCSWGKT 308
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 86/178 (48%), Gaps = 15/178 (8%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMN 192
++V NL TV E+ + + F + G++ + K++ D G + + F++F + A +A+ MN
Sbjct: 44 LYVGNLDPTVSEDFVATLFNQIGSVTKTKVIFD--GANDPYAFVEFSDHAQASQALQTMN 101
Query: 193 GRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARF 252
R++ V+ A V P +P + R +FV +L S ++N + E F F
Sbjct: 102 KRLLLDREMKVNWA-------VEPGQQPSKIDTTRHFHVFVGDLSSEVDNQKLREAFQPF 154
Query: 253 GTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKPG 304
G ++ + ++ D K GF+ + + A A+ MNG + ++ + KPG
Sbjct: 155 GDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATRKPG 212
>gi|18416906|ref|NP_567764.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|75331668|sp|Q93W34.1|RP45C_ARATH RecName: Full=Polyadenylate-binding protein RBP45C;
Short=Poly(A)-binding protein RBP45C; AltName:
Full=RNA-binding protein 45C; Short=AtRBP45C
gi|13878153|gb|AAK44154.1|AF370339_1 putative DNA binding protein [Arabidopsis thaliana]
gi|15450814|gb|AAK96678.1| putative DNA binding protein [Arabidopsis thaliana]
gi|17104569|gb|AAL34173.1| putative DNA binding protein [Arabidopsis thaliana]
gi|20259888|gb|AAM13291.1| putative DNA binding protein [Arabidopsis thaliana]
gi|332659882|gb|AEE85282.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 415
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 76/296 (25%), Positives = 129/296 (43%), Gaps = 35/296 (11%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L + +L+P +D L+N F G +V RNK N S G+ I F A A++
Sbjct: 82 LWIGDLQPWMDENYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFVNHATAERNLQTY 141
Query: 96 NGHLIGS--KPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHF-I 152
NG + S + + + +L G+R + GPE VFV +L V + L F
Sbjct: 142 NGAPMPSSEQAFRLNWAQLGAGERRQAEGPEHT------VFVGDLAPDVTDHMLTETFKA 195
Query: 153 KFGNIIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPG 211
+ ++ K+V D G+SKG+GF++F +A+ EMNG+ + S + G
Sbjct: 196 VYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTEMNGQ-------YCSSRPMRTG 248
Query: 212 KKVFPKVKPPLLQPAR--------------KNKIFVANLPSNINNSEFEELFARFGTITS 257
KP +QPA IFV + ++ + + +F +FG +
Sbjct: 249 PAA--NKKPLTMQPASYQNTQGNSGESDPTNTTIFVGAVDQSVTEDDLKSVFGQFGELVH 306
Query: 258 SSLVSDKHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKPGVSITNPTKA 313
+ + K GF+++ A A+S +NG + ++++ G P T P +A
Sbjct: 307 VKIPAGKRCGFVQYANRACAEQALSVLNGTQLGGQSIRLSW-GRSPSNKQTQPDQA 361
>gi|389595175|ref|XP_003722810.1| poly(A)-binding protein 2 [Leishmania major strain Friedlin]
gi|323364038|emb|CBZ13044.1| poly(A)-binding protein 2 [Leishmania major strain Friedlin]
Length = 594
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 66/257 (25%), Positives = 126/257 (49%), Gaps = 27/257 (10%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
+ V L+P + Q L + F + G + VRV + +S G+ + F PA+A+KA ++
Sbjct: 10 IWVGGLDPDLQEQKLYDYFVRIGPVTSVRVCVDSATQKSLGYGYVNFQDPADAEKA-LDQ 68
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
G +GS+ + I ++ P +R V + + VK L ++VD LK F KFG
Sbjct: 69 AGSKLGSRYLRIAKIQRDPSKRRSGV---------NNILVKKLPKSVDTYALKEMFSKFG 119
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
+ + + DE G+S+G+ I F ++A A+ EM+G + + V ++
Sbjct: 120 RLTAIGLACDEKGESRGYARISFEREESAVDAVREMDGMEMDGQAIVV--------ERYQ 171
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSS------SLVSDKHIGFI 269
+ + LL+ + ++V NL + + + FA++G ++S+ + S+ +G++
Sbjct: 172 AQHRDELLK--QFTNLYVKNLDPAVTDEKLRAFFAKYGEVSSAKVRDLGAAQSEAGLGYV 229
Query: 270 EFIMPKHATHAVSTMNG 286
F ++A AV +NG
Sbjct: 230 AFQKHENAARAVEELNG 246
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 74/280 (26%), Positives = 127/280 (45%), Gaps = 24/280 (8%)
Query: 35 NELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVE 94
N + V L SVD AL F KFG L + +A ++ ESRG+A I F A A E
Sbjct: 95 NNILVKKLPKSVDTYALKEMFSKFGRLTAIGLACDEKGESRGYARISFEREESAVDAVRE 154
Query: 95 MNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKF 154
M+G + + +++ +R + +E + ++VKNL V +E+L++ F K+
Sbjct: 155 MDGMEMDGQAIVV--------ERYQAQHRDELLKQFTNLYVKNLDPAVTDEKLRAFFAKY 206
Query: 155 GNIIEVKIVRDENGKSK--GFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL------A 206
G + K VRD G G++ F ++ A +A+ E+NG+ + L +
Sbjct: 207 GEVSSAK-VRDLGAAQSEAGLGYVAFQKHENAARAVEELNGKECEIAKAGSPLDVSRFRS 265
Query: 207 EIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKH- 265
+ + + Q ++ ++V + + EELF R+G S +++ DK
Sbjct: 266 REERQRDRERQRRERAQQHSKYPNLYVKGFDDTVTSERLEELFQRYGETVSVTVMMDKET 325
Query: 266 -----IGFIEFIMPKHATHAVSTMNGHVFKS-KPLKVTLS 299
GF+ A+ A+ +NG F S +PL VT +
Sbjct: 326 GVSRCFGFVSMKDQNAASQAIQELNGSTFLSPRPLFVTYA 365
>gi|221121672|ref|XP_002156905.1| PREDICTED: ELAV-like protein 2-like [Hydra magnipapillata]
Length = 339
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 76/292 (26%), Positives = 126/292 (43%), Gaps = 37/292 (12%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKKARVEM 95
L VN L + + F + G + + ++ RN +S G+A I + T A+ A ++
Sbjct: 16 LIVNYLPQTFTQDEVSQMFARIGPVSNCKLIRNYTTGQSLGYAFIEYPTAQLAEDAINQL 75
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
+G + K + +++ P + K V+V L VDE+ L S F FG
Sbjct: 76 DGMTLQDKKLKVSYAR-----------PSSTEIKNSNVYVAGLPSWVDEDRLLSLFAPFG 124
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
+II KI+ D KS+G GF+++ AEKAI M G+++ ++T + + +P
Sbjct: 125 SIITHKILTDAASKSRGVGFVRYSLKSDAEKAIESMAGKVLPDSTTALIVKLAIPPASKQ 184
Query: 216 PKVKPPLLQP-----------------ARKNKIFVANLPSNINNSEFEELFARFGTITSS 258
QP + N ++V L + + ELFA FG I +
Sbjct: 185 LAAAAAAAQPLNSIAGVPKQIVQYNPMSLSNPVYVYGLQPHHSELTLYELFAPFGGILNV 244
Query: 259 SLVSD--------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
L+ D K GF+ F A A++TM+ H + K L+V+ K
Sbjct: 245 KLIRDNAKPEKPCKGYGFVNFRKQDEALAAIATMHNHPYDGKILQVSFKQNK 296
>gi|4455223|emb|CAB36546.1| putative DNA binding protein [Arabidopsis thaliana]
gi|7269553|emb|CAB79555.1| putative DNA binding protein [Arabidopsis thaliana]
Length = 427
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 76/296 (25%), Positives = 129/296 (43%), Gaps = 35/296 (11%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L + +L+P +D L+N F G +V RNK N S G+ I F A A++
Sbjct: 82 LWIGDLQPWMDENYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFVNHATAERNLQTY 141
Query: 96 NGHLIGS--KPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHF-I 152
NG + S + + + +L G+R + GPE VFV +L V + L F
Sbjct: 142 NGAPMPSSEQAFRLNWAQLGAGERRQAEGPEHT------VFVGDLAPDVTDHMLTETFKA 195
Query: 153 KFGNIIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPG 211
+ ++ K+V D G+SKG+GF++F +A+ EMNG+ + S + G
Sbjct: 196 VYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTEMNGQ-------YCSSRPMRTG 248
Query: 212 KKVFPKVKPPLLQPAR--------------KNKIFVANLPSNINNSEFEELFARFGTITS 257
KP +QPA IFV + ++ + + +F +FG +
Sbjct: 249 PAA--NKKPLTMQPASYQNTQGNSGESDPTNTTIFVGAVDQSVTEDDLKSVFGQFGELVH 306
Query: 258 SSLVSDKHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKPGVSITNPTKA 313
+ + K GF+++ A A+S +NG + ++++ G P T P +A
Sbjct: 307 VKIPAGKRCGFVQYANRACAEQALSVLNGTQLGGQSIRLSW-GRSPSNKQTQPDQA 361
>gi|52221255|gb|AAU29548.1| poly(A)-binding protein [Crithidia fasciculata]
Length = 564
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 74/279 (26%), Positives = 132/279 (47%), Gaps = 22/279 (7%)
Query: 35 NELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVE 94
N + V L SVD AL F K+G L + +A ++ ESRG+A I F A A E
Sbjct: 95 NNILVKKLPKSVDTFALKEMFGKYGRLTAIGLACDERGESRGYARISFEREESAVDAVKE 154
Query: 95 MNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKF 154
M+G + + +++ +R + +E + ++VKNL TV + +L++ F K+
Sbjct: 155 MDGMEMDGQAIVV--------ERYQAQHRDEMLKQFTNLYVKNLEPTVTDSKLRAFFAKY 206
Query: 155 GNIIEVKIVRDENGKSK-GFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL------AE 207
G + K+ + +S+ GFG++ F ++ A KA+ E+NG+ + L +
Sbjct: 207 GEVSSAKVRDLGDAQSEVGFGYVAFEKHEDAAKAVEELNGKECEIAKAGAPLDVSRFRSR 266
Query: 208 IVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKH-- 265
+ + + Q ++ ++V + + EELF R+G S ++++DK
Sbjct: 267 EERQRDRERQRRERAQQHSKYPNLYVKGFDDTVTSERLEELFQRYGETVSVTVMTDKDTG 326
Query: 266 ----IGFIEFIMPKHATHAVSTMNGHVFKS-KPLKVTLS 299
GF+ A+HA+ +NG F S +PL VT +
Sbjct: 327 MSRCFGFVSMKDQGAASHAIQDLNGSTFLSPRPLFVTYA 365
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/257 (24%), Positives = 122/257 (47%), Gaps = 27/257 (10%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
+ V L+P ++ Q L + F + G + VRV + +S G+ + F P++A+KA ++
Sbjct: 10 IWVGGLDPELNEQKLYDYFVRIGPVASVRVCVDSATQKSLGYGYVNFQDPSDAEKA-LDQ 68
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
G +G++ + I ++ P +R V + + VK L ++VD LK F K+G
Sbjct: 69 AGAKLGTRFLRIAKIQRDPSKRRSGV---------NNILVKKLPKSVDTFALKEMFGKYG 119
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
+ + + DE G+S+G+ I F ++A A+ EM+G + + V + ++
Sbjct: 120 RLTAIGLACDERGESRGYARISFEREESAVDAVKEMDGMEMDGQAIVVERYQAQHRDEML 179
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSL------VSDKHIGFI 269
+ ++V NL + +S+ FA++G ++S+ + S+ G++
Sbjct: 180 KQF----------TNLYVKNLEPTVTDSKLRAFFAKYGEVSSAKVRDLGDAQSEVGFGYV 229
Query: 270 EFIMPKHATHAVSTMNG 286
F + A AV +NG
Sbjct: 230 AFEKHEDAAKAVEELNG 246
>gi|320168681|gb|EFW45580.1| polyadenylate-binding protein [Capsaspora owczarzaki ATCC 30864]
Length = 814
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 80/325 (24%), Positives = 151/325 (46%), Gaps = 38/325 (11%)
Query: 5 GKILEASWDEG---ISDDEGARSNKENNKVYKENE---LHVNNLEPSVDNQALINEFKKF 58
G + S+D+ ++ G N + +V++ E L V NL ++L + F
Sbjct: 117 GLVTYESFDDAHAAMTQVNGMYLNGQQVQVHRLPERPSLIVRNLPADASEESLAALCRPF 176
Query: 59 GTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRS 118
G + V + E ++ + +A A ++G +GS + +TF + +
Sbjct: 177 GRV-GVATIVQEAPEDAPMGVVCLDRFEDALTAIRALHGSKLGSNQLSVTFPATRAEREC 235
Query: 119 KPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQF 178
+ + + + K+ +KN+ +D+++L+ F FG II + I+RDE GKSKG+GF+ +
Sbjct: 236 ESAVAQRLERLQGKLVIKNMDVDMDDDQLEELFAPFGTIISLHIMRDETGKSKGYGFVAY 295
Query: 179 FSYKAAEKAIIEMNGRMI---------------QHNSTFVS--LAEIVPGKKVFPKVKPP 221
+ +AA KA+ +G+ +H+ F + +AE+ +V
Sbjct: 296 STTEAASKAMAATHGQTFDRLTRPLDVTIFTSSEHDGMFKANRVAEVRHHAEV------A 349
Query: 222 LLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKH 276
+ RKN + + NL +I+ + LFA FG I + ++ D + +GF++F +
Sbjct: 350 RIAQFRKN-LCIRNLGESIDEKQLRALFAPFGKIRTCHVLRDDMGRSRKVGFVDFATMEE 408
Query: 277 ATHAVSTMNG--HVFKSKPLKVTLS 299
A+ AV+ M+G P+ VTLS
Sbjct: 409 ASKAVAEMHGKPSPGTQMPMTVTLS 433
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 72/279 (25%), Positives = 123/279 (44%), Gaps = 27/279 (9%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L + NL S+D + L F FG +R V R+ SR + F T EA KA EM+
Sbjct: 358 LCIRNLGESIDEKQLRALFAPFGKIRTCHVLRDDMGRSRKVGFVDFATMEEASKAVAEMH 417
Query: 97 GH-LIGSKPVIITFVELKPGQRSKPVGP---------------EEKQYKKDK-VFVKNLV 139
G G++ + + + P P E Q + K ++VKN+
Sbjct: 418 GKPSPGTQMPMTVTLSHRARDAQDPPAPNASGKDSSTDEAEPDAEGQIRPRKLIYVKNID 477
Query: 140 ETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHN 199
V+ E+L+ F +FG I+ I+RD+ G SKG G + + AA A+ M+G+ +
Sbjct: 478 PAVELEDLQRVFGQFGAIVSSNIMRDDAGISKGIGHVDYLHADAARAAVAAMDGKRLTAT 537
Query: 200 STFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSS 259
+ ++ P + P R + + NL +IN S +LF+ FG I SS
Sbjct: 538 GQPLRVSLPDPRDR---------FSPIRYASLIIKNLEQSINLSALRDLFSPFGCILSSR 588
Query: 260 LV-SDKHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVT 297
+ + ++F+ + +A++ +NG + P+ +
Sbjct: 589 TIETQPRAALVDFLSEEACQNAIANINGAIVNGLPVTAS 627
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 66/271 (24%), Positives = 123/271 (45%), Gaps = 36/271 (13%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L V NL+P +D+Q L + F +FGT+ +VA S G ++ + + +A A ++N
Sbjct: 81 LVVKNLDPRMDDQQLRDIFGEFGTMTLCKVA-----SSIGVGLVTYESFDDAHAAMTQVN 135
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G + + V + + +P + V+NL EE L + FG
Sbjct: 136 GMYLNGQQVQVHRLPERP-----------------SLIVRNLPADASEESLAALCRPFGR 178
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFP 216
+ IV+ E + G + ++ A AI ++G + N V+ P +
Sbjct: 179 VGVATIVQ-EAPEDAPMGVVCLDRFEDALTAIRALHGSKLGSNQLSVTF----PATRAER 233
Query: 217 KVKPPLLQPARK--NKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFI 269
+ + + Q + K+ + N+ ++++ + EELFA FGTI S ++ D K GF+
Sbjct: 234 ECESAVAQRLERLQGKLVIKNMDVDMDDDQLEELFAPFGTIISLHIMRDETGKSKGYGFV 293
Query: 270 EFIMPKHATHAVSTMNGHVFK--SKPLKVTL 298
+ + A+ A++ +G F ++PL VT+
Sbjct: 294 AYSTTEAASKAMAATHGQTFDRLTRPLDVTI 324
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 68/292 (23%), Positives = 131/292 (44%), Gaps = 42/292 (14%)
Query: 9 EASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVAR 68
++S DE D EG ++ ++V N++P+V+ + L F +FG + + R
Sbjct: 451 DSSTDEAEPDAEG--------QIRPRKLIYVKNIDPAVELEDLQRVFGQFGAIVSSNIMR 502
Query: 69 NKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGS--KPVIITFVELKPGQRSKPVGPEEK 126
+ S+G + + A+ A M+G + + +P+ ++ + P R P+
Sbjct: 503 DDAGISKGIGHVDYLHADAARAAVAAMDGKRLTATGQPLRVSLPD--PRDRFSPI----- 555
Query: 127 QYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEK 186
+ + +KNL ++++ L+ F FG I+ + + + + + F S +A +
Sbjct: 556 --RYASLIIKNLEQSINLSALRDLFSPFGCILSSRTIETQPRAA----LVDFLSEEACQN 609
Query: 187 AIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFE 246
AI +NG IV G P P ++ R++ ++VANLP+N N +
Sbjct: 610 AIANING-------------AIVNG---LPVTASPYVRKDRRS-VYVANLPANYNYVKLM 652
Query: 247 ELFARFGTITSSSLVSD-KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVT 297
LFA G I ++ + D +GF+ F P + +GHV + + L V+
Sbjct: 653 ALFADCGKIVTTIVPRDFSTVGFVCFDQPA-SVELAERFHGHVLEGEELYVS 703
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 36/164 (21%), Positives = 75/164 (45%), Gaps = 16/164 (9%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
++V NL + + L+ F G + V R+ + + GF + F+ PA + A +
Sbjct: 637 VYVANLPANYNYVKLMALFADCGKIVTTIVPRDFS--TVGF--VCFDQPASVELAE-RFH 691
Query: 97 GHLIGSKPVIITFVELK-----PGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHF 151
GH++ + + ++ L+ P + V P Y + N+ E++++
Sbjct: 692 GHVLEGEELYVSRFPLQTDPAPPPHATSEVAPYHILY------LTNVDFEASEDKVRELC 745
Query: 152 IKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRM 195
+G + V + R +G S+GF F+ F + + A KA ++G++
Sbjct: 746 APYGTLTAVHVRRRADGTSRGFAFVHFTNVEDASKAKDALSGQI 789
>gi|351704535|gb|EHB07454.1| Polyadenylate-binding protein 1 [Heterocephalus glaber]
Length = 281
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 61/174 (35%), Positives = 95/174 (54%), Gaps = 20/174 (11%)
Query: 142 VDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNST 201
+D+E LK F + VK++ DE+GKSKGF F+ F ++ A+KA+ EMNG+ +
Sbjct: 1 MDDERLKDLFRP---ALSVKVMTDESGKSKGFRFVSFERHEDAQKAVDEMNGKELNGKQI 57
Query: 202 FVSLAEIVPGKKVFPKVKPPL-LQPARKNKI--------FVANLPSNINNSEFEELFARF 252
+V A+ KKV P+ +P + +++ I +V NL I++ + F+ F
Sbjct: 58 YVGRAQ----KKVEPQTEPKHKFEQMKQDTITRYQGVNLYVKNLDDGIDDEHLRKEFSPF 113
Query: 253 GTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GTITS+ ++ + K GF+ F P+ AT AV MNG +KPL V L+ K
Sbjct: 114 GTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVKEMNGRTVATKPLYVALAQLK 167
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 102/211 (48%), Gaps = 37/211 (17%)
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
V+V +++ +S+GF + F +A+KA EMNG + K + + G+ K V P
Sbjct: 16 VKVMTDESGKSKGFRFVSFERHEDAQKAVDEMNGKELNGKQIYV-------GRAQKKVEP 68
Query: 124 EE------KQYKKDKV--------FVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGK 169
+ +Q K+D + +VKNL + +D+E L+ F FG I K++ E G+
Sbjct: 69 QTEPKHKFEQMKQDTITRYQGVNLYVKNLDDGIDDEHLRKEFSPFGTITSAKVMM-EGGR 127
Query: 170 SKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEI---------------VPGKKV 214
SKGFGF+ F S + A KA+ EMNGR + +V+LA++ + +
Sbjct: 128 SKGFGFVCFSSPEEATKAVKEMNGRTVATKPLYVALAQLKEESPAHLTSQYMQRMASVRA 187
Query: 215 FPKVKPPLLQPARKNKIFVANLPSNINNSEF 245
P QPA + F+A +P N + +
Sbjct: 188 VPNAVINPYQPAPPSGYFMAAIPQTQNRAAY 218
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L+V NL+ +D++ L EF FGT+ +V + S+GF + F++P EA KA
Sbjct: 87 YQGVNLYVKNLDDGIDDEHLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKA 145
Query: 92 RVEMNGHLIGSKPVIITFVELK 113
EMNG + +KP+ + +LK
Sbjct: 146 VKEMNGRTVATKPLYVALAQLK 167
>gi|300120548|emb|CBK20102.2| unnamed protein product [Blastocystis hominis]
Length = 534
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 73/279 (26%), Positives = 127/279 (45%), Gaps = 34/279 (12%)
Query: 51 LINEFKKFGTLRDVRVARNKND-ESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITF 109
L EFKK+G +R V +KN +SR + + F+T EA+KA N +++ K + +
Sbjct: 5 LEEEFKKYGKVRATHVVLDKNTKQSRCYGYVDFSTAEEAEKALEGANFNILKGKEMRVMR 64
Query: 110 VELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRD-ENG 168
+L+ Q P G +FVKNL + + +EL F +GNI+ K+ D E G
Sbjct: 65 QQLRFKQTCNPKG---------NLFVKNLPDLMTNKELLDKFSAYGNILSCKVAFDKETG 115
Query: 169 KSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARK 228
KS +G++ F +K + +MN +++ + +V E K +
Sbjct: 116 KSLHYGYVHFSDPNVTQKVLADMNKDVVEEGAMYVMEYE-----KRMKDTSSDWV----- 165
Query: 229 NKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKH-----IGFIEFIMPKHATHAVST 283
+VAN P+ + +LF ++GTI S + ++ GF+ F A AV
Sbjct: 166 -TCYVANFPTTLTEDGLRDLFGKYGTINSVYIGYKRYNPQKIQGFVTFANHDSAVKAVEG 224
Query: 284 MNGHVFKSKPLKVTLSGTKPGVSITNPTKAPKKPAYIDE 322
+ V +T+ G +P V N ++ ++ A I++
Sbjct: 225 LKDQV-------ITVEGAEPMVLYVNRLQSREERASINQ 256
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 71/158 (44%), Gaps = 18/158 (11%)
Query: 146 ELKSHFIKFGNIIEVKIVRDENGK-SKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVS 204
+L+ F K+G + +V D+N K S+ +G++ F + + AEKA+ N +++ V
Sbjct: 4 DLEEEFKKYGKVRATHVVLDKNTKQSRCYGYVDFSTAEEAEKALEGANFNILKGKEMRVM 63
Query: 205 LAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDK 264
++ + PK +FV NLP + N E + F+ +G I S + DK
Sbjct: 64 RQQLRFKQTCNPK-----------GNLFVKNLPDLMTNKELLDKFSAYGNILSCKVAFDK 112
Query: 265 ------HIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
H G++ F P ++ MN V + + V
Sbjct: 113 ETGKSLHYGYVHFSDPNVTQKVLADMNKDVVEEGAMYV 150
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 65/284 (22%), Positives = 116/284 (40%), Gaps = 30/284 (10%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L V NL + N+ L+++F +G + +VA +K +S + + F+ P +K +M
Sbjct: 79 LFVKNLPDLMTNKELLDKFSAYGNILSCKVAFDKETGKSLHYGYVHFSDPNVTQKVLADM 138
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N ++ + + E +R K + +V N T+ E+ L+ F K+G
Sbjct: 139 NKDVVEEGAMYVMEYE----KRMKDTSSDWV-----TCYVANFPTTLTEDGLRDLFGKYG 189
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAI---------IEMNGRMIQHNSTFVSLA 206
I V I K GF+ F ++ +A KA+ +E M+ + + S
Sbjct: 190 TINSVYIGYKRYNPQKIQGFVTFANHDSAVKAVEGLKDQVITVEGAEPMVLYVNRLQSRE 249
Query: 207 EIVPGKKVFPKVKPPLLQPARKNK-IFVANLPSNINNSEFEELFARFGTITSSSLVSDKH 265
E + + K K + ++V I E+F +G I S S+ DK+
Sbjct: 250 ERASINQKILEEKKKEEVERTKGRFLYVGFGDQTITLERLREIFQAYGNIESCSIARDKN 309
Query: 266 ------IGFIEFIMPKHATHAVSTMN-GHVFKSKPLKVTLSGTK 302
GF+ ++A +A+ H K LKV L+ T+
Sbjct: 310 TKELKPFGFVCMDTTENAQNAIRAFRESHDLK---LKVELAQTR 350
>gi|123430889|ref|XP_001307992.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121889649|gb|EAX95062.1| hypothetical protein TVAG_428650 [Trichomonas vaginalis G3]
Length = 537
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 74/278 (26%), Positives = 127/278 (45%), Gaps = 43/278 (15%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+H++NL + + ++ G + +V + +N FA + F+TP A KA E N
Sbjct: 11 VHISNLPSGITTDFIKILLQECGEVVNVTLKERQNGN---FAFVTFDTPESALKAIKEFN 67
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYK------KDKVFVKNLVETVDEEELKSH 150
+ P++IT P ++Y+ + ++V+ L ++ +L
Sbjct: 68 YTKLNGSPIVIT--------------PTTQEYQNLIKSGEGNLYVRGLDVYIEVSQLHEL 113
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVP 210
F +G +I K+ +G +KG+ ++QF AEKA +E+N +I N +S + P
Sbjct: 114 FQTYGEVISCKLPTGTDGLNKGYAYVQFRDPNDAEKARVELNDAVI--NGKKIS---VEP 168
Query: 211 GKKVFPKVKPPLLQPARKNK-----------IFVANLPSNINN-SEFEELFARFGTITSS 258
KK K +P PA + IF+ NLPSN+ N ++ LF+ FG + S+
Sbjct: 169 YKK---KERPQKTSPASNPRGAPASDDVFTNIFIRNLPSNVRNETDLGNLFSEFGVVIST 225
Query: 259 SLVSDKHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
++ D GF I A A+ +NG V K L+V
Sbjct: 226 KMLPDGFSGFCNMIDHDSAVRAIQALNGKVIDGKVLEV 263
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 85/170 (50%), Gaps = 13/170 (7%)
Query: 34 ENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARV 93
E L+V L+ ++ L F+ +G + ++ + ++G+A + F P +A+KARV
Sbjct: 93 EGNLYVRGLDVYIEVSQLHELFQTYGEVISCKLPTGTDGLNKGYAYVQFRDPNDAEKARV 152
Query: 94 EMNGHLIGSKPVIITFVELK--PGQRSKPVGPEEKQYKKD---KVFVKNLVETV-DEEEL 147
E+N +I K + + + K P + S P D +F++NL V +E +L
Sbjct: 153 ELNDAVINGKKISVEPYKKKERPQKTSPASNPRGAPASDDVFTNIFIRNLPSNVRNETDL 212
Query: 148 KSHFIKFGNIIEVKIVRDENGKSKGF-GFIQFFSYKAAEKAIIEMNGRMI 196
+ F +FG +I K++ D GF GF + +A +AI +NG++I
Sbjct: 213 GNLFSEFGVVISTKMLPD------GFSGFCNMIDHDSAVRAIQALNGKVI 256
Score = 38.1 bits (87), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 84/201 (41%), Gaps = 19/201 (9%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMN 192
V + NL + + +K + G ++ V + +NG F F+ F + ++A KAI E N
Sbjct: 11 VHISNLPSGITTDFIKILLQECGEVVNVTLKERQNGN---FAFVTFDTPESALKAIKEFN 67
Query: 193 GRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARF 252
+ + S V I P + + L++ N ++V L I S+ ELF +
Sbjct: 68 YTKL-NGSPIV----ITPTTQEYQN----LIKSGEGN-LYVRGLDVYIEVSQLHELFQTY 117
Query: 253 GTITSSSLVS-----DKHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKPGVSI 307
G + S L + +K +++F P A A +N V K + V K
Sbjct: 118 GEVISCKLPTGTDGLNKGYAYVQFRDPNDAEKARVELNDAVINGKKISVEPYKKKERPQK 177
Query: 308 TNPTKAPK-KPAYIDEVKNVI 327
T+P P+ PA D N+
Sbjct: 178 TSPASNPRGAPASDDVFTNIF 198
>gi|71659778|ref|XP_821609.1| poly(A)-binding protein [Trypanosoma cruzi strain CL Brener]
gi|459650|gb|AAC46487.1| poly(A) binding protein [Trypanosoma cruzi]
gi|515321|gb|AAC46489.1| poly(A) binding protein [Trypanosoma cruzi]
gi|2854066|gb|AAC02537.1| poly(A)-binding protein [Trypanosoma cruzi]
gi|2854068|gb|AAC02538.1| poly(A)-binding protein [Trypanosoma cruzi]
gi|70886993|gb|EAN99758.1| poly(A)-binding protein, putative [Trypanosoma cruzi]
gi|407408287|gb|EKF31789.1| poly(A)-binding protein, putative,polyadenylate-binding protein,
putative [Trypanosoma cruzi marinkellei]
gi|407847529|gb|EKG03215.1| poly(A)-binding protein, putative,polyadenylate-binding protein,
putative [Trypanosoma cruzi]
Length = 550
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 125/248 (50%), Gaps = 24/248 (9%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
+ V L+P+++ Q L + F + G + VRV + +S G+ + F PA+A+KA ++
Sbjct: 11 IWVGGLDPNLNEQKLYDHFVRLGPVASVRVCVDSVTQKSLGYGYVNFQNPADAEKA-LDQ 69
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
G +GSK + I ++ P +R V + VK L +VD LK F K+G
Sbjct: 70 AGVKLGSKHIRIAKIQRDPSKRRSGV---------TNIVVKKLPPSVDTYALKEMFSKYG 120
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
+ + + +ENG+S+G+ I + ++A +A+ E+NG +I + V ++
Sbjct: 121 RLTAIGLATNENGESRGYARISYEKEESAIQAVQEVNGMVIDDCAITV--------ERYQ 172
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSS---SLVSDKHIGFIEFI 272
P + L+ + ++V NL ++N+ + +E+F+ FG +TS+ L +++ +GF
Sbjct: 173 PHHREEQLK--QFTNLYVKNLDPSVNDEKLKEVFSAFGEVTSAKVRDLGANQTVGFAYVA 230
Query: 273 MPKHATHA 280
H A
Sbjct: 231 YATHEAAA 238
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 71/274 (25%), Positives = 131/274 (47%), Gaps = 21/274 (7%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
V L PSVD AL F K+G L + +A N+N ESRG+A I + A +A E+NG
Sbjct: 100 VKKLPPSVDTYALKEMFSKYGRLTAIGLATNENGESRGYARISYEKEESAIQAVQEVNGM 159
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
+I + + +R +P EE+ + ++VKNL +V++E+LK F FG +
Sbjct: 160 VIDDCAITV--------ERYQPHHREEQLKQFTNLYVKNLDPSVNDEKLKEVFSAFGEVT 211
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRM--IQHNSTFVSLAEIVPGKKVFP 216
K+ ++ GF ++ + +++AA KA+ E++ + + +S+ +
Sbjct: 212 SAKVRDLGANQTVGFAYVAYATHEAAAKAVEELDEKESPLAKEGMKLSVCRFRSRDERQR 271
Query: 217 KVKPPLLQPARKNK----IFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHI 266
+ + + +++ ++V N + + +ELF R G S S++ D +
Sbjct: 272 ERERLRRERQQQHSKYPNLYVKNFDDTVTSERLKELFERCGETVSVSVMMDRATRVSRCF 331
Query: 267 GFIEFIMPKHATHAVSTMNGHV-FKSKPLKVTLS 299
GF+ F A+ A+ ++G +PL VT +
Sbjct: 332 GFVSFKEQSAASRAIQELHGSTALGPRPLFVTYA 365
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 82/166 (49%), Gaps = 9/166 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L+V NL+PSV+++ L F FG + +V +++ GFA + + T A KA E++
Sbjct: 186 LYVKNLDPSVNDEKLKEVFSAFGEVTSAKVRDLGANQTVGFAYVAYATHEAAAKAVEELD 245
Query: 97 GHLI-----GSKPVIITFVELKPGQRSKPVGPEEKQYKKDK---VFVKNLVETVDEEELK 148
G K + F QR + E+Q + K ++VKN +TV E LK
Sbjct: 246 EKESPLAKEGMKLSVCRFRSRDERQRERERLRRERQQQHSKYPNLYVKNFDDTVTSERLK 305
Query: 149 SHFIKFGNIIEVKIVRDENGK-SKGFGFIQFFSYKAAEKAIIEMNG 193
F + G + V ++ D + S+ FGF+ F AA +AI E++G
Sbjct: 306 ELFERCGETVSVSVMMDRATRVSRCFGFVSFKEQSAASRAIQELHG 351
>gi|328876647|gb|EGG25010.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
fasciculatum]
Length = 748
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 72/247 (29%), Positives = 118/247 (47%), Gaps = 35/247 (14%)
Query: 37 LHVNNLEPSVDNQALINEFKKFG--TLRDVRVARNKND-ESRGFAIIVFNTPAEAKKARV 93
L+V +L V+ L F K G + + V R+ S G+A + F +A++A
Sbjct: 132 LYVGDLSQEVNELILAELFSKVGRTAVASIHVCRDSATLRSLGYAYVNFYNSVDAERALD 191
Query: 94 EMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIK 153
+N LI +P I + P +R VG +FVKNL + VD L F
Sbjct: 192 TLNYSLILGRPCRIMWSHRDPTKRKSNVG---------NIFVKNLEKNVDNALLFDTFST 242
Query: 154 FGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHN----STFVSLAEIV 209
+GNI+ KI E G SKG+G++ F + +++E+AI+++NG ++ FVS E
Sbjct: 243 YGNILSCKI-EYEKGISKGYGYVHFENQESSEQAILKVNGTILLGKPIIVEPFVSKVERF 301
Query: 210 PGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----K 264
KK +NK+F+ N+ N+ + ++ +RFG I S ++ +D K
Sbjct: 302 KEKK-------------NENKLFIKNIDENVTSEMLQQELSRFGEIESCNIRTDPTGKPK 348
Query: 265 HIGFIEF 271
+ F+EF
Sbjct: 349 GLAFVEF 355
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 81/312 (25%), Positives = 135/312 (43%), Gaps = 50/312 (16%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ V NLE +VDN L + F +G + ++ K S+G+ + F +++A +++N
Sbjct: 222 IFVKNLEKNVDNALLFDTFSTYGNILSCKIEYEKGI-SKGYGYVHFENQESSEQAILKVN 280
Query: 97 GHLIGSKPVIIT-FVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
G ++ KP+I+ FV SK +EK+ ++K+F+KN+ E V E L+ +FG
Sbjct: 281 GTILLGKPIIVEPFV-------SKVERFKEKK-NENKLFIKNIDENVTSEMLQQELSRFG 332
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAI-------------------------IE 190
I I D GK KG F++F + + A+ + IE
Sbjct: 333 EIESCNIRTDPTGKPKGLAFVEFKTSEDAQALLESTEAITILSKQITFDRIKNKVERSIE 392
Query: 191 MNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFE---- 246
N ++I N + L Q ++ NL INN + E
Sbjct: 393 KNQKLI--NELNNNNNNHNNNNINHHINSSSLQQNGSTSQQQQQNLTLFINNIDMEVDKE 450
Query: 247 ---ELFARFGTITSSSLVSDKHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK- 302
E FA+ G I + S + F+ + + A A+ MNG+VF +K L V+LS ++
Sbjct: 451 IIREEFAKHGNILGIKIKS-RGFAFLTYSTQEEAAVAIEKMNGYVFGTKALVVSLSNSRK 509
Query: 303 ----PGVSITNP 310
P S+ P
Sbjct: 510 EKRIPSDSLQGP 521
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 91/207 (43%), Gaps = 42/207 (20%)
Query: 34 ENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARV 93
EN+L + N++ +V ++ L E +FG + + + + +G A + F T +A+
Sbjct: 307 ENKLFIKNIDENVTSEMLQQELSRFGEIESCNIRTDPTGKPKGLAFVEFKTSEDAQALLE 366
Query: 94 EMNGHLIGSKPVIITFVELKPG-QRS--------------------------------KP 120
I SK ITF +K +RS +
Sbjct: 367 STEAITILSKQ--ITFDRIKNKVERSIEKNQKLINELNNNNNNHNNNNINHHINSSSLQQ 424
Query: 121 VGPEEKQYKKD-KVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFF 179
G +Q +++ +F+ N+ VD+E ++ F K GNI+ +KI KS+GF F+ +
Sbjct: 425 NGSTSQQQQQNLTLFINNIDMEVDKEIIREEFAKHGNILGIKI------KSRGFAFLTYS 478
Query: 180 SYKAAEKAIIEMNGRMIQHNSTFVSLA 206
+ + A AI +MNG + + VSL+
Sbjct: 479 TQEEAAVAIEKMNGYVFGTKALVVSLS 505
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 79/171 (46%), Gaps = 18/171 (10%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGN--IIEVKIVRDENG-KSKGFGFIQFFSYKAAEKAII 189
++V +L + V+E L F K G + + + RD +S G+ ++ F++ AE+A+
Sbjct: 132 LYVGDLSQEVNELILAELFSKVGRTAVASIHVCRDSATLRSLGYAYVNFYNSVDAERALD 191
Query: 190 EMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELF 249
+N +I + + P K+ + IFV NL N++N+ + F
Sbjct: 192 TLNYSLILGRPCRIMWSHRDPTKR-----------KSNVGNIFVKNLEKNVDNALLFDTF 240
Query: 250 ARFGTITSSSLVSDKHI----GFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
+ +G I S + +K I G++ F + + A+ +NG + KP+ V
Sbjct: 241 STYGNILSCKIEYEKGISKGYGYVHFENQESSEQAILKVNGTILLGKPIIV 291
>gi|82621116|gb|ABB86246.1| DNA-binding protein-like [Solanum tuberosum]
Length = 423
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 69/289 (23%), Positives = 126/289 (43%), Gaps = 36/289 (12%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
+ + +L+ +D L F + G + V+V RNK +S + I FNT A+K
Sbjct: 81 IWIGDLQQWMDEGYLHTCFAQAGEVISVKVIRNKQTGQSERYGFIEFNTHEAAEKVLQSY 140
Query: 96 NGHLI--GSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHF-I 152
NG ++ +P + + G++ VG +FV +L V + L+ F
Sbjct: 141 NGTMMPNAEQPFRLNWSAFSTGEKRADVGAAAGSGSDLSIFVGDLASDVTDTMLRDTFSS 200
Query: 153 KFGNIIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPG 211
++ ++ K+V D N G+SKG+GF++F +A+ EMNG + + +A
Sbjct: 201 RYPSVKGAKVVIDSNTGRSKGYGFVRFDDESERSRAMTEMNGIYCSSRAMRIGVAT---- 256
Query: 212 KKVFPKVKPPLLQPARK----------------------NKIFVANLPSNINNSEFEELF 249
PK KP +Q +FV L S++ + E + F
Sbjct: 257 ----PK-KPSAMQQYSSQGGHASNGAATQTSQTDSDLSNTTVFVGGLDSDVTDEELRQSF 311
Query: 250 ARFGTITSSSLVSDKHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTL 298
++FG + S + + K GF++F A A+ +NG V ++ ++++
Sbjct: 312 SQFGNVVSVKIPAGKGCGFVQFSERSAAEDAIEKLNGTVIGTQTVRLSW 360
>gi|14029147|gb|AAK51123.1| polyadenylated mRNA-binding protein 2 [Anemia phyllitidis]
Length = 472
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 68/216 (31%), Positives = 105/216 (48%), Gaps = 15/216 (6%)
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G LI K V++T P R + K + VFVKNL E +E+L F FG
Sbjct: 1 GMLINDKQVVVT-----PFVRRQERELTNAATKFNNVFVKNLAEETTDEDLMEVFGGFGP 55
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFP 216
I ++RD NG SK FGF+ F + A KA+ +NG++ +V A+ ++
Sbjct: 56 ISSAVVMRDANGNSKCFGFVNFKNADDAAKAVENINGKVFNDKEWYVGRAQKKSEREAEL 115
Query: 217 KVKPPLLQPARKNK-----IFVANLPSNINNSEFEELFARFGTITSSSLVSDKH-----I 266
KVK L+ R K +++ N+ +I++ + +ELF+ FGT+ S ++
Sbjct: 116 KVKFEQLRKERTEKFQGVNLYLKNVDDSIDDEKLKELFSGFGTVNSCKIMRSPQGQIVGS 175
Query: 267 GFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ A AV+ MNG + SKPL V ++ K
Sbjct: 176 GFVALSSKDEAMRAVNEMNGKMVGSKPLYVAVAQRK 211
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 93/187 (49%), Gaps = 9/187 (4%)
Query: 29 NKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEA 88
N K N + V NL ++ L+ F FG + V R+ N S+ F + F +A
Sbjct: 24 NAATKFNNVFVKNLAEETTDEDLMEVFGGFGPISSAVVMRDANGNSKCFGFVNFKNADDA 83
Query: 89 KKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDK--------VFVKNLVE 140
KA +NG + K + + K +R + + +Q +K++ +++KN+ +
Sbjct: 84 AKAVENINGKVFNDKEWYVGRAQ-KKSEREAELKVKFEQLRKERTEKFQGVNLYLKNVDD 142
Query: 141 TVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNS 200
++D+E+LK F FG + KI+R G+ G GF+ S A +A+ EMNG+M+
Sbjct: 143 SIDDEKLKELFSGFGTVNSCKIMRSPQGQIVGSGFVALSSKDEAMRAVNEMNGKMVGSKP 202
Query: 201 TFVSLAE 207
+V++A+
Sbjct: 203 LYVAVAQ 209
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 53/94 (56%)
Query: 26 KENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTP 85
KE + ++ L++ N++ S+D++ L F FGT+ ++ R+ + G + ++
Sbjct: 124 KERTEKFQGVNLYLKNVDDSIDDEKLKELFSGFGTVNSCKIMRSPQGQIVGSGFVALSSK 183
Query: 86 AEAKKARVEMNGHLIGSKPVIITFVELKPGQRSK 119
EA +A EMNG ++GSKP+ + + K +R+K
Sbjct: 184 DEAMRAVNEMNGKMVGSKPLYVAVAQRKDERRAK 217
>gi|449016981|dbj|BAM80383.1| polyadenylate-binding protein [Cyanidioschyzon merolae strain 10D]
Length = 999
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 78/141 (55%), Gaps = 9/141 (6%)
Query: 75 RGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDK-- 132
RGFA + F TP +A A +NG + K + + + K +R + + +Q + D+
Sbjct: 469 RGFAFVNFETPEQAAAAVEALNGMELNGKTLYVGRAQKK-AEREAMLRAQMEQLRNDRMQ 527
Query: 133 ------VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEK 186
+FVKNL + VDE L+ F +FG I ++I+RDE G SKGFGF+ F A K
Sbjct: 528 KLQDVNLFVKNLSDDVDENRLREEFSRFGTITSLRIMRDEKGVSKGFGFVAFSHPDEAIK 587
Query: 187 AIIEMNGRMIQHNSTFVSLAE 207
A+ EMN R++ +V+LA+
Sbjct: 588 AVTEMNQRIVGQKPIYVALAQ 608
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 107/226 (47%), Gaps = 20/226 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L+P V Q L F G + VRV R+ S G+A + F P +A++A +
Sbjct: 178 LYVGDLQPDVVEQNLFELFSSVGPVVSVRVCRDVVTRRSLGYAYVNFQNPEDAERAIDVL 237
Query: 96 N---GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFI 152
G L +KP+ I + P QR P G +F+KNL +++D + L F
Sbjct: 238 QFYEGPLTKNKPIRIMWKRSDPSQRRNPEG---------NIFIKNLDKSIDNKALYDTFS 288
Query: 153 KFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGK 212
FG ++ K+ D+ G S G+ F+ + A+ I +MNG ++ +V E P +
Sbjct: 289 TFGKVLSCKLATDDKGNSLGYAFVHYQDANVAKYVISKMNGMLLNGQKVYV--GEFRPRR 346
Query: 213 KVFPKVKPPLLQPARKNKIFVANLPSNINNS-EFEELFARFGTITS 257
+ + + ++V NL ++ + E +LFA +G ITS
Sbjct: 347 EREATGE----LSTKFTNVYVKNLDESLCTTEEVTKLFAPYGNITS 388
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 48/83 (57%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L V NL VD L EF +FGT+ +R+ R++ S+GF + F+ P EA KA EMN
Sbjct: 534 LFVKNLSDDVDENRLREEFSRFGTITSLRIMRDEKGVSKGFGFVAFSHPDEAIKAVTEMN 593
Query: 97 GHLIGSKPVIITFVELKPGQRSK 119
++G KP+ + + K +R++
Sbjct: 594 QRIVGQKPIYVALAQRKDQRRAQ 616
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 70/141 (49%), Gaps = 10/141 (7%)
Query: 169 KSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARK 228
+ +GF F+ F + + A A+ +NG + + +V A+ ++ + + L+ R
Sbjct: 467 RPRGFAFVNFETPEQAAAAVEALNGMELNGKTLYVGRAQKKAEREAMLRAQMEQLRNDRM 526
Query: 229 NKI-----FVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHAT 278
K+ FV NL +++ + E F+RFGTITS ++ D K GF+ F P A
Sbjct: 527 QKLQDVNLFVKNLSDDVDENRLREEFSRFGTITSLRIMRDEKGVSKGFGFVAFSHPDEAI 586
Query: 279 HAVSTMNGHVFKSKPLKVTLS 299
AV+ MN + KP+ V L+
Sbjct: 587 KAVTEMNQRIVGQKPIYVALA 607
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 75/161 (46%), Gaps = 15/161 (9%)
Query: 3 SKGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLR 62
+K K + W D R N E N + + NL+ S+DN+AL + F FG +
Sbjct: 245 TKNKPIRIMWKR---SDPSQRRNPEGN-------IFIKNLDKSIDNKALYDTFSTFGKVL 294
Query: 63 DVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVG 122
++A + S G+A + + AK +MNG L+ + V + E +P + + G
Sbjct: 295 SCKLATDDKGNSLGYAFVHYQDANVAKYVISKMNGMLLNGQKVYVG--EFRPRREREATG 352
Query: 123 PEEKQYKKDKVFVKNLVETV-DEEELKSHFIKFGNIIEVKI 162
E K V+VKNL E++ EE+ F +GNI + I
Sbjct: 353 --ELSTKFTNVYVKNLDESLCTTEEVTKLFAPYGNITSIFI 391
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 76/173 (43%), Gaps = 20/173 (11%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEM 191
++V +L V E+ L F G ++ V++ RD +S G+ ++ F + + AE+AI +
Sbjct: 178 LYVGDLQPDVVEQNLFELFSSVGPVVSVRVCRDVVTRRSLGYAYVNFQNPEDAERAIDVL 237
Query: 192 N---GRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEEL 248
G + ++ + P ++ P+ IF+ NL +I+N +
Sbjct: 238 QFYEGPLTKNKPIRIMWKRSDPSQRRNPE-----------GNIFIKNLDKSIDNKALYDT 286
Query: 249 FARFGTITSSSLVSDK-----HIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
F+ FG + S L +D F+ + A + +S MNG + + + V
Sbjct: 287 FSTFGKVLSCKLATDDKGNSLGYAFVHYQDANVAKYVISKMNGMLLNGQKVYV 339
>gi|405946351|gb|EKC17616.1| Polyadenylate-binding protein 4 [Crassostrea gigas]
Length = 199
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 60/201 (29%), Positives = 103/201 (51%), Gaps = 26/201 (12%)
Query: 82 FNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEK----------QYKKD 131
F P A+KA +NG+ K I +V + + +EK +Y+
Sbjct: 4 FEDPEAAEKAVEALNGNDNAGK---IIYVRCDQKEIERQAELKEKFQRIRMERINRYQGV 60
Query: 132 KVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEM 191
++VKNL + +D+ L+ F +FG I K++ E+G+SKGFGF+ F S + A KAI+EM
Sbjct: 61 NLYVKNLADNIDDVRLRKEFAQFGTITSAKVMTTEDGRSKGFGFVCFRSPEEAAKAIVEM 120
Query: 192 NGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNK-----------IFVANLPSNI 240
N ++I+ +V+LA+ +K ++ +Q +F+ NL +I
Sbjct: 121 NEKLIEARPLYVALAQKKQDRKA--QLASQYMQRTSSRDMPEHRIGPGVNLFIKNLDKSI 178
Query: 241 NNSEFEELFARFGTITSSSLV 261
++ + E F++FGTITS+ +V
Sbjct: 179 DDEKLREEFSQFGTITSAKVV 199
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 78/143 (54%), Gaps = 11/143 (7%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L+V NL ++D+ L EF +FGT+ +V ++ S+GF + F +P EA KA
Sbjct: 57 YQGVNLYVKNLADNIDDVRLRKEFAQFGTITSAKVMTTEDGRSKGFGFVCFRSPEEAAKA 116
Query: 92 RVEMNGHLIGSKPVIITFVELKPGQRSKPVG-----------PEEKQYKKDKVFVKNLVE 140
VEMN LI ++P+ + + K ++++ PE + +F+KNL +
Sbjct: 117 IVEMNEKLIEARPLYVALAQKKQDRKAQLASQYMQRTSSRDMPEHRIGPGVNLFIKNLDK 176
Query: 141 TVDEEELKSHFIKFGNIIEVKIV 163
++D+E+L+ F +FG I K+V
Sbjct: 177 SIDDEKLREEFSQFGTITSAKVV 199
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 67/131 (51%), Gaps = 10/131 (7%)
Query: 182 KAAEKAIIEMNG-----RMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANL 236
+AAEKA+ +NG ++I + K+ F +++ + + ++V NL
Sbjct: 8 EAAEKAVEALNGNDNAGKIIYVRCDQKEIERQAELKEKFQRIRMERINRYQGVNLYVKNL 67
Query: 237 PSNINNSEFEELFARFGTITSSSLVS-----DKHIGFIEFIMPKHATHAVSTMNGHVFKS 291
NI++ + FA+FGTITS+ +++ K GF+ F P+ A A+ MN + ++
Sbjct: 68 ADNIDDVRLRKEFAQFGTITSAKVMTTEDGRSKGFGFVCFRSPEEAAKAIVEMNEKLIEA 127
Query: 292 KPLKVTLSGTK 302
+PL V L+ K
Sbjct: 128 RPLYVALAQKK 138
>gi|156358574|ref|XP_001624592.1| predicted protein [Nematostella vectensis]
gi|156211382|gb|EDO32492.1| predicted protein [Nematostella vectensis]
Length = 235
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 119/243 (48%), Gaps = 18/243 (7%)
Query: 38 HVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRG-FAIIVFNTPAEAKKARVEMN 96
+V NL+P + + + F K + VR + +G + + F T A+A++A+ M+
Sbjct: 1 YVGNLDPKCTQELICSIFNKIAKV--VRCKMINSVSYKGPYCFVEFETHADAQEAKFRMD 58
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
+ K + + + PG + G + +FV +L E VD L+ F FG
Sbjct: 59 QRTVMDKKLKVNWATNHPGMKR---GDTNNHFH---IFVGDLAENVDNALLRKTFEPFGE 112
Query: 157 IIEVKIVRD-ENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIV--PGKK 213
I EV++V+D KSKGFGF+ F + A KAI EM+ I + A P +
Sbjct: 113 ISEVRVVKDPAKNKSKGFGFVSFVRREDAAKAIAEMDSVTIGGKQVKTNWAARKNNPTQS 172
Query: 214 VFPKVKPPLL-----QPARKNK-IFVANLPSNINNSEFEELFARFGTITSSSLVSDKHIG 267
+ VK L Q ++ N ++V NLP ++ + E +++F+++G+I + + +DK
Sbjct: 173 KYVCVKNLLWDDVFHQSSQLNTTVYVGNLPPDVKDYELQQMFSQYGSILETKVFADKGYA 232
Query: 268 FIE 270
FI+
Sbjct: 233 FIK 235
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 87/184 (47%), Gaps = 25/184 (13%)
Query: 6 KILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVR 65
K L+ +W ++ G + NN + + V +L +VDN L F+ FG + +VR
Sbjct: 65 KKLKVNW---ATNHPGMKRGDTNNHFH----IFVGDLAENVDNALLRKTFEPFGEISEVR 117
Query: 66 VARN-KNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELK--PGQRSKPVG 122
V ++ ++S+GF + F +A KA EM+ IG K V + K P Q SK V
Sbjct: 118 VVKDPAKNKSKGFGFVSFVRREDAAKAIAEMDSVTIGGKQVKTNWAARKNNPTQ-SKYVC 176
Query: 123 PEEKQYKK---------DKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGF 173
+ + V+V NL V + EL+ F ++G+I+E K+ D KG+
Sbjct: 177 VKNLLWDDVFHQSSQLNTTVYVGNLPPDVKDYELQQMFSQYGSILETKVFAD-----KGY 231
Query: 174 GFIQ 177
FI+
Sbjct: 232 AFIK 235
>gi|123446312|ref|XP_001311908.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121893735|gb|EAX98978.1| hypothetical protein TVAG_431870 [Trichomonas vaginalis G3]
Length = 574
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 82/280 (29%), Positives = 132/280 (47%), Gaps = 39/280 (13%)
Query: 33 KENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKAR 92
KEN +HV NL P+V + L + F + GT+ +V + K + +A + F EA+ A
Sbjct: 12 KENGIHVANLPPTVTVEFLKSLFSEAGTVINVIL---KQKPTSCYAFVDFTLQEEAETAV 68
Query: 93 VEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFI 152
+ N + + +I+T + + PV + +F+K L E++D +L F
Sbjct: 69 RDFNYTKLNGETIIVT-------RTTAPVV-SAISSGQGNLFIKGLDESIDCLQLHELFA 120
Query: 153 KFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEM-----NGRMIQHNSTFVSLAE 207
+G I+ +I NG+ +GFG++QF + AE A+ E+ NG+ IQ F+ +E
Sbjct: 121 NYGEIVSCRI-PTLNGQPRGFGYVQFLKQEDAEHAMKELADSTVNGKPIQIGP-FLKRSE 178
Query: 208 IVPGKKVFPKVKPPLLQPARKNK-------IFVANLPSNINNS-EFEELFARFGTITSSS 259
+P L A +N +FV NLP NIN LF FG +TS+
Sbjct: 179 -----------RP--LSAAFQNNLDSSFTNVFVKNLPDNINTLLSLLRLFHEFGDVTSAR 225
Query: 260 LVSDKHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299
+V ++HIG++ + A AV + G K L V S
Sbjct: 226 IVPERHIGYVMMSEHEAAVRAVVGLCGRTIFGKRLSVCRS 265
>gi|340056333|emb|CCC50664.1| poly(A)-binding protein [Trypanosoma vivax Y486]
Length = 548
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 76/275 (27%), Positives = 131/275 (47%), Gaps = 23/275 (8%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
V L P+VD AL F K+G L + +A N+ ESRG+A I + A +A +NG
Sbjct: 100 VKKLPPTVDTYALKEMFSKYGRLTAIGLATNEKGESRGYARISYEKEESAIEAVQGVNGM 159
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
I P+ + +R +P EE+ ++VKNL +V +E+LK F +G +
Sbjct: 160 TIDDCPITV--------ERYQPHHREEQLKLYTNLYVKNLDPSVGDEKLKEVFSAYGEVT 211
Query: 159 EVKIVRDENGK-SKGFGFIQFFSYKAAEKAIIEMNGRM--IQHNSTFVSLAEIVPGKKVF 215
K VRD GK S GF ++ + +++AA KA+ E++ + + +S+ ++
Sbjct: 212 SAK-VRDLGGKMSVGFAYVAYATHEAAVKAVEELDDKENPLAKEGMKLSVCRFRSREERQ 270
Query: 216 PKVKPPLLQP----ARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDK------H 265
+ + + ++ ++V N + + +ELF RFG S S++ DK
Sbjct: 271 RERERLRRERQQLYSKYPNLYVKNFDDTVTSERLKELFERFGETVSVSVMVDKATKVSRC 330
Query: 266 IGFIEFIMPKHATHAVSTMNGHV-FKSKPLKVTLS 299
GF+ F A+ A+ ++G +PL VT +
Sbjct: 331 FGFVSFKEQNSASRAIQELHGSTALGPRPLFVTYA 365
Score = 80.9 bits (198), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 62/244 (25%), Positives = 117/244 (47%), Gaps = 21/244 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
+ V L+P+++ Q L + F + G + VRV + +S G+ + F PA+A+KA ++
Sbjct: 11 IWVGGLDPNLNEQKLYDHFVRVGPVASVRVCVDTVTQKSLGYGYVNFQNPADAEKA-LDQ 69
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
G +GSK + I ++ P +R V + VK L TVD LK F K+G
Sbjct: 70 AGVKLGSKHIRIARIQRDPSKRRSGV---------TNIVVKKLPPTVDTYALKEMFSKYG 120
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
+ + + +E G+S+G+ I + ++A +A+ +NG I V ++
Sbjct: 121 RLTAIGLATNEKGESRGYARISYEKEESAIEAVQGVNGMTIDDCPITV--------ERYQ 172
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKHIGFIEFIMPK 275
P + L+ ++V NL ++ + + +E+F+ +G +TS+ + + F
Sbjct: 173 PHHREEQLK--LYTNLYVKNLDPSVGDEKLKEVFSAYGEVTSAKVRDLGGKMSVGFAYVA 230
Query: 276 HATH 279
+ATH
Sbjct: 231 YATH 234
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 84/180 (46%), Gaps = 17/180 (9%)
Query: 26 KENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTP 85
+E K+Y L+V NL+PSV ++ L F +G + +V S GFA + + T
Sbjct: 177 EEQLKLY--TNLYVKNLDPSVGDEKLKEVFSAYGEVTSAKVRDLGGKMSVGFAYVAYATH 234
Query: 86 AEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQY-----------KKDKVF 134
A KA E++ P+ ++L + + ++ K ++
Sbjct: 235 EAAVKAVEELDDK---ENPLAKEGMKLSVCRFRSREERQRERERLRRERQQLYSKYPNLY 291
Query: 135 VKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGK-SKGFGFIQFFSYKAAEKAIIEMNG 193
VKN +TV E LK F +FG + V ++ D+ K S+ FGF+ F +A +AI E++G
Sbjct: 292 VKNFDDTVTSERLKELFERFGETVSVSVMVDKATKVSRCFGFVSFKEQNSASRAIQELHG 351
>gi|193648018|ref|XP_001950341.1| PREDICTED: nucleolysin TIAR-like [Acyrthosiphon pisum]
Length = 388
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 77/276 (27%), Positives = 117/276 (42%), Gaps = 29/276 (10%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L+V NL+PSV + L F G + +V R + +A + F+T + A A MN
Sbjct: 10 LYVGNLDPSVTEELLCALFTNIGPVNACKVIREPGSDP--YAFLEFDTHSGAATALAAMN 67
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G L K + + + PG + P+ +FV +L ++ LK F FG
Sbjct: 68 GRLFLDKEMKVNWA-TTPGNQ-----PKLDTSNHYHIFVGDLSPEIETHTLKEAFAPFGE 121
Query: 157 IIEVKIVRD-ENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
I +IVRD + KSKG+ F+ F AE AI MNG+ + S + + P
Sbjct: 122 ISNCRIVRDPQTLKSKGYAFVSFVKKSDAENAINSMNGQWLGSRSIRTNWSTRKP----- 176
Query: 216 PKVKPPLLQPARKNKIF--VANLPSNINNSEF-------------EELFARFGTITSSSL 260
P + P + F V N S N + + E++F+RFGTI
Sbjct: 177 PPPRAPNKYSGYRAVTFDDVYNQSSPTNCTVYCGGIVEGLTEELVEQVFSRFGTIVEIRA 236
Query: 261 VSDKHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
DK FI+F + AT A+ ++ P+K
Sbjct: 237 FRDKGYAFIKFSTKEAATTAIEAVHNTEINGHPVKC 272
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 88/190 (46%), Gaps = 21/190 (11%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMN 192
++V NL +V EE L + F G + K++R+ S + F++F ++ A A+ MN
Sbjct: 10 LYVGNLDPSVTEELLCALFTNIGPVNACKVIREPG--SDPYAFLEFDTHSGAATALAAMN 67
Query: 193 GRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARF 252
GR+ V+ A PG + P L + IFV +L I +E FA F
Sbjct: 68 GRLFLDKEMKVNWA-TTPGNQ-------PKLDTSNHYHIFVGDLSPEIETHTLKEAFAPF 119
Query: 253 GTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKPGVS 306
G I++ +V D K F+ F+ A +A+++MNG S+ ++ S KP
Sbjct: 120 GEISNCRIVRDPQTLKSKGYAFVSFVKKSDAENAINSMNGQWLGSRSIRTNWSTRKP--- 176
Query: 307 ITNPTKAPKK 316
P +AP K
Sbjct: 177 --PPPRAPNK 184
>gi|348666125|gb|EGZ05953.1| hypothetical protein PHYSODRAFT_348578 [Phytophthora sojae]
Length = 356
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 64/269 (23%), Positives = 119/269 (44%), Gaps = 14/269 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
++V NL S+ Q L + + G + ++ N S+G I+ + T A+ A +N
Sbjct: 91 VYVGNLSWSIKWQDLKDHMQAAGPV-ELATVLESNGRSKGCGIVTYETEEAAQNAIATLN 149
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
+G + + + E + Q V P+ + +V+V NL V +ELK H K G
Sbjct: 150 DTELGGRKIFVR--EDREAQPVSAVKPK----RGFRVYVGNLSWNVKWQELKDHMKKAGT 203
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKV-- 214
++ ++ + NG+SKG G +++ + + A KAI E+N ++ FV G +
Sbjct: 204 VVHADVLEEPNGRSKGCGLVEYATQEEAAKAIAELNNTELEGRLIFVREDREPEGGSISK 263
Query: 215 FPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS-----DKHIGFI 269
F K +++V NLP N + ++LF G + + + + G I
Sbjct: 264 FAKRAAAPRGSGEGRQLYVGNLPWETNWQQLKDLFRTVGDVERADIAEYPDGRSRGFGII 323
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKVTL 298
+ A A+ +NG + + ++V L
Sbjct: 324 RYTNAADAWQAIERLNGLEIEGRLIEVRL 352
>gi|296235783|ref|XP_002763047.1| PREDICTED: uncharacterized protein LOC100399785, partial
[Callithrix jacchus]
Length = 445
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 79/157 (50%), Gaps = 11/157 (7%)
Query: 23 RSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIV 81
R E N + L+V +L P V L +F G + +R+ R+K S G+A +
Sbjct: 298 RGGCEGNPDFPMASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVN 357
Query: 82 FNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVET 141
+ P +AK+A +N +I +PV I + + P R VG VF+KNL +T
Sbjct: 358 YQQPVDAKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVG---------NVFIKNLGKT 408
Query: 142 VDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQF 178
+D + L + F FGNI+ K+ DE G KG+GF+ F
Sbjct: 409 IDNKALYNIFSAFGNILSCKVACDEKGP-KGYGFVHF 444
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 65/144 (45%), Gaps = 16/144 (11%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEM 191
++V +L V E L F G I+ ++I RD+ +S G+ ++ + A++A+ +
Sbjct: 312 LYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETL 371
Query: 192 NGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFAR 251
N +I+ + ++ + P L+ + +F+ NL I+N +F+
Sbjct: 372 NFDVIKGRPVRIMWSQ-----------RDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSA 420
Query: 252 FGTITSSSLVSD----KHIGFIEF 271
FG I S + D K GF+ F
Sbjct: 421 FGNILSCKVACDEKGPKGYGFVHF 444
>gi|215765810|dbj|BAG87507.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 345
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/273 (24%), Positives = 125/273 (45%), Gaps = 21/273 (7%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
+ V +L +D L + F G + ++V RNK +S G+ + F + A A+K
Sbjct: 21 IWVGDLHYWMDENYLHSCFGYTGEVVAIKVIRNKQTGQSEGYGFVEFYSHAAAEKVLEGF 80
Query: 96 NGHLI--GSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIK 153
GH++ +P I + G R + + +FV +L V++ L F K
Sbjct: 81 AGHIMPNTDQPFRINWASFSMGDRRSDIASDHS------IFVGDLASDVNDTTLLETFSK 134
Query: 154 -FGNIIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPG 211
+ ++ K+V D N G+SKG+GF++F A+ EMNG + ++ + + P
Sbjct: 135 RYSSVKGAKVVIDANTGRSKGYGFVRFGDDNEKTHAMTEMNG--VYCSTRPMRIGPATPR 192
Query: 212 KKVFPKVKPPLLQPARKN------KIFVANLPSNINNSEFEELFARFGTITSSSLVSDKH 265
K P AR + +FV L N++ + + F+++G I+S + K
Sbjct: 193 KT--SGTSGPTGSAARSDGDLTNTTVFVGGLDPNVSEDDLRQTFSQYGEISSVKIPVGKQ 250
Query: 266 IGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTL 298
GF++F+ K+A A+ +NG + ++++
Sbjct: 251 CGFVQFVQRKNAEDALQGLNGSTIGKQTVRLSW 283
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 99/194 (51%), Gaps = 18/194 (9%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRD-ENGKSKGFGFIQFFSYKAAEKAIIEM 191
++V +L +DE L S F G ++ +K++R+ + G+S+G+GF++F+S+ AAEK +
Sbjct: 21 IWVGDLHYWMDENYLHSCFGYTGEVVAIKVIRNKQTGQSEGYGFVEFYSHAAAEKVLEGF 80
Query: 192 NGRMIQHNST--FVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELF 249
G ++ + ++ A G + A + IFV +L S++N++ E F
Sbjct: 81 AGHIMPNTDQPFRINWASFSMGDR--------RSDIASDHSIFVGDLASDVNDTTLLETF 132
Query: 250 A-RFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
+ R+ ++ + +V D K GF+ F THA++ MNG ++P+++ + +
Sbjct: 133 SKRYSSVKGAKVVIDANTGRSKGYGFVRFGDDNEKTHAMTEMNGVYCSTRPMRIGPATPR 192
Query: 303 PGVSITNPTKAPKK 316
+ PT + +
Sbjct: 193 KTSGTSGPTGSAAR 206
>gi|440297981|gb|ELP90622.1| nucleolysin TIA-1, putative [Entamoeba invadens IP1]
Length = 305
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 72/269 (26%), Positives = 120/269 (44%), Gaps = 21/269 (7%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+HV L SVD L F G + ++ ++K + I F A+ A+ MN
Sbjct: 41 VHVAGLHESVDETLLSRIFSIVGHVVSCKIMKDKTGTHARYGFIEFIDHTTAEFAKENMN 100
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G L+ K + + + +S G K+FV L V E L +F KFG
Sbjct: 101 GRLVYGKELKVNWTH---DSQSDAKGSF-------KLFVGGLHTEVTNEILYQNFAKFGR 150
Query: 157 IIEVKIVR-DENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
+ + +++R ++GKS+G+GF+ F + AE A+ MNG IQ + V+ +K
Sbjct: 151 VSDARVLRYSQSGKSQGYGFVTFIRKEDAETAMQMMNGEKIQGRTVKVNWG--TATQKPT 208
Query: 216 PKVKPPLLQPARK-----NKIFVANLPSNINNSEFEELFARFGTITSSSLV---SDKHIG 267
VK + +R+ N ++V +P S +LF FG I ++ ++K G
Sbjct: 209 ETVKRGFDEISRETSNTNNNVYVGGIPKETEESTMRKLFGDFGEIIDLKIMRTDAEKAYG 268
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
F+ F+ +AT A+ +NG+ L
Sbjct: 269 FVRFVSHDNATKAIMMLNGYQLNGGCLNC 297
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 101/216 (46%), Gaps = 30/216 (13%)
Query: 118 SKPVGPEEKQ--YKKDK-VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFG 174
S+P+ E +Q ++ K V V L E+VDE L F G+++ KI++D+ G +G
Sbjct: 23 SQPLASEVQQVPFENSKSVHVAGLHESVDETLLSRIFSIVGHVVSCKIMKDKTGTHARYG 82
Query: 175 FIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKN-KIFV 233
FI+F + AE A MNGR+ V GK++ A+ + K+FV
Sbjct: 83 FIEFIDHTTAEFAKENMNGRL-------------VYGKELKVNWTHDSQSDAKGSFKLFV 129
Query: 234 ANLPSNINNSEFEELFARFGTITSSSLVS------DKHIGFIEFIMPKHATHAVSTMNGH 287
L + + N + FA+FG ++ + ++ + GF+ FI + A A+ MNG
Sbjct: 130 GGLHTEVTNEILYQNFAKFGRVSDARVLRYSQSGKSQGYGFVTFIRKEDAETAMQMMNGE 189
Query: 288 VFKSKPLKVTLSGTKPGVSITNPTKAPKKPAYIDEV 323
+ + +KV G + PT+ K+ DE+
Sbjct: 190 KIQGRTVKVNW-----GTATQKPTETVKRG--FDEI 218
>gi|332376136|gb|AEE63208.1| unknown [Dendroctonus ponderosae]
Length = 371
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 69/279 (24%), Positives = 117/279 (41%), Gaps = 40/279 (14%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L+V NL+ SV L F + G ++ ++ R ++ +A + F A A + MN
Sbjct: 10 LYVGNLDISVQEDLLCALFSQIGPVKGCKIIREPGNDP--YAFVEFTNHQSASTALIAMN 67
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
+ K + + + PG + P+ +FV +L ++ + L+ F FG
Sbjct: 68 KRVFLDKEMKVNWA-TSPGNQ-----PKTDTSNHHHIFVGDLSPEIETDTLREAFAPFGE 121
Query: 157 IIEVKIVRD-ENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
I +IVRD + KSKG+ F+ F AE AI MNG+ + S + + P
Sbjct: 122 ISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAIQAMNGQWLGSRSIRTNWSTRKP----- 176
Query: 216 PKVKPPLLQPARKNK------------------IFVANLPSNINNSEFEELFARFGTITS 257
PP + ++K ++ S + + + F+RFG I
Sbjct: 177 ---PPPRAEKPNQSKKQITFDEVYNQTSPTNTTVYCGGFASGLTDDLVTKTFSRFGAIQD 233
Query: 258 SSLVSDKHIGFIEFIMPKHATHAV-----STMNGHVFKS 291
+ DK FI+F+ + ATHA+ + +NGH K
Sbjct: 234 IRVFKDKGYAFIKFVSKESATHAIENIHNTEINGHTVKC 272
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 88/199 (44%), Gaps = 16/199 (8%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMN 192
++V NL +V E+ L + F + G + KI+R+ + F++F ++++A A+I MN
Sbjct: 10 LYVGNLDISVQEDLLCALFSQIGPVKGCKIIREPGNDP--YAFVEFTNHQSASTALIAMN 67
Query: 193 GRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARF 252
R+ V+ A PG + P + + IFV +L I E FA F
Sbjct: 68 KRVFLDKEMKVNWA-TSPGNQ-------PKTDTSNHHHIFVGDLSPEIETDTLREAFAPF 119
Query: 253 GTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKPGVS 306
G I++ +V D K F+ F+ A +A+ MNG S+ ++ S KP
Sbjct: 120 GEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAIQAMNGQWLGSRSIRTNWSTRKPPPP 179
Query: 307 ITNPTKAPKKPAYIDEVKN 325
KK DEV N
Sbjct: 180 RAEKPNQSKKQITFDEVYN 198
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 88/191 (46%), Gaps = 23/191 (12%)
Query: 25 NKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKND-ESRGFAIIVFN 83
N+ + + V +L P ++ L F FG + + R+ R+ +S+G+A + F
Sbjct: 86 NQPKTDTSNHHHIFVGDLSPEIETDTLREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFV 145
Query: 84 TPAEAKKARVEMNGHLIGSKPVIITFVELK-PGQRSKPVGPEEKQYKKDK---------- 132
AEA+ A MNG +GS+ + + K P R++ +KQ D+
Sbjct: 146 KKAEAENAIQAMNGQWLGSRSIRTNWSTRKPPPPRAEKPNQSKKQITFDEVYNQTSPTNT 205
Query: 133 -VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAI--- 188
V+ + ++ + F +FG I ++++ +D KG+ FI+F S ++A AI
Sbjct: 206 TVYCGGFASGLTDDLVTKTFSRFGAIQDIRVFKD-----KGYAFIKFVSKESATHAIENI 260
Query: 189 --IEMNGRMIQ 197
E+NG ++
Sbjct: 261 HNTEINGHTVK 271
>gi|402587661|gb|EJW81596.1| nucleolysin TIAR [Wuchereria bancrofti]
Length = 440
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 70/285 (24%), Positives = 125/285 (43%), Gaps = 31/285 (10%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
++V NL+PS+ + F + G + +V + ++ +A + F A +A MN
Sbjct: 95 VYVGNLDPSITEDFITTLFGQIGAVTKTKVIFDGTNDP--YAFVEFADHYTAAQALQAMN 152
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
++ K + + + +PG ++K K VFV +L VD + LK F FG
Sbjct: 153 KRVLLEKEMKVNWA-TEPGSQAKV-----DTSKHFHVFVGDLSPEVDNKALKDAFAPFGE 206
Query: 157 IIEVKIVRDENG-KSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVP----- 210
+ + K++RD KSKG+GF+ + + AE+AI +MNG+ + + + A P
Sbjct: 207 VSDAKVIRDATTLKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATRKPTGTGA 266
Query: 211 -----GKK------VFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSS 259
G+ V+ + P ++V N+ SN N+ + F +FG I
Sbjct: 267 GDGQYGRSELNYDDVYNQTGPD------NTSVYVGNVNSNANDEDLRAAFDKFGRILEVR 320
Query: 260 LVSDKHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKPG 304
+ + F+ F A +A+ MNG + +K + T G
Sbjct: 321 IFKSQGYAFVRFDKKDSACNAICKMNGQELCGQNIKCSWGRTPEG 365
>gi|399950033|gb|AFP65689.1| polyadenylate-binding protein [Chroomonas mesostigmatica CCMP1168]
Length = 490
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 85/305 (27%), Positives = 140/305 (45%), Gaps = 42/305 (13%)
Query: 16 ISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDES 74
I D + K K+ L+V +L V+ +L+ F K G + +++ R+ S
Sbjct: 16 IGDSSNKKFLKRKIKIKNPCSLYVGDLSIYVEESSLMKIFSKIGKVHSIQICRDFSTGIS 75
Query: 75 RGFAIIVFNTPAEAKKARVEMNGHL---IGSKPVIITFVELKPGQRSKPVGPEEKQYKKD 131
RG++ + F P +A+KA +N + + KP+ I +V+ R G
Sbjct: 76 RGYSYVNFLNPKDAQKAFKLLNYYTDETLHYKPLRIMWVQKDKSLRFSGTG--------- 126
Query: 132 KVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEM 191
+F+KN+ D + L F +FG I+ KI DEN +S G+GF+ + K ++KAI +M
Sbjct: 127 NLFIKNIPRRYDNKSLSKLFSQFGKILSCKIALDENKRSMGYGFVHYKEEKDSKKAIEKM 186
Query: 192 NGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNK---------IFVAN-LPSNIN 241
N I G+K+F V P + + R N+ +++ N L N N
Sbjct: 187 NNCFID-------------GEKIF--VGPFISKVKRNNRNNSKLRFTNVYIKNILFQNCN 231
Query: 242 NSEFEELFARFGTITSSSL--VSDKHIG--FIEFIMPKHATHAVSTMNGHVFKSKPLKVT 297
++LF FG ITS + ++ +G F+ F P+ A A+ MNG K K L V
Sbjct: 232 EIYIKDLFEIFGPITSIFIPKANEAPLGFAFVNFENPEDAEDAIFKMNGKKIKGKTLYVG 291
Query: 298 LSGTK 302
+ T+
Sbjct: 292 KAETR 296
>gi|195121744|ref|XP_002005379.1| GI19109 [Drosophila mojavensis]
gi|193910447|gb|EDW09314.1| GI19109 [Drosophila mojavensis]
Length = 300
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 95/164 (57%), Gaps = 8/164 (4%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+++ NLE S+DN+A+ + F FG + + VA++++ SRG+ + F++ A+ A ++N
Sbjct: 108 IYIKNLERSIDNKAVYDTFSAFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVN 167
Query: 97 GHLIGSKPV-IITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
G L ++ V ++ F+ + + +EK ++VKNL E E+ L+ F +G
Sbjct: 168 GMLCNNQKVHVVKFIPRRDRE-------QEKATHFKNLYVKNLSEEFTEQHLREMFEPYG 220
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHN 199
I K++ DE G+S+ FGF+ F S ++A A+I ++G+ + N
Sbjct: 221 RITSHKLMLDEEGRSRRFGFVAFESPQSALAAVIGLHGKQLGDN 264
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 78/160 (48%), Gaps = 13/160 (8%)
Query: 132 KVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEM 191
K+++KNL ++D + + F FGNI+ + +DE+G S+G+GF+ F S +AA AI ++
Sbjct: 107 KIYIKNLERSIDNKAVYDTFSAFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKV 166
Query: 192 NGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFAR 251
NG + + V K P+ + ++V NL E+F
Sbjct: 167 NGMLCNNQKVHVV--------KFIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREMFEP 218
Query: 252 FGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNG 286
+G ITS L+ D + GF+ F P+ A AV ++G
Sbjct: 219 YGRITSHKLMLDEEGRSRRFGFVAFESPQSALAAVIGLHG 258
>gi|115479619|ref|NP_001063403.1| Os09g0462700 [Oryza sativa Japonica Group]
gi|113631636|dbj|BAF25317.1| Os09g0462700, partial [Oryza sativa Japonica Group]
Length = 441
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 67/273 (24%), Positives = 125/273 (45%), Gaps = 21/273 (7%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
+ V +L +D L + F G + ++V RNK +S G+ + F + A A+K
Sbjct: 117 IWVGDLHYWMDENYLHSCFGYTGEVVAIKVIRNKQTGQSEGYGFVEFYSHAAAEKVLEGF 176
Query: 96 NGHLI--GSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIK 153
GH++ +P I + G R + + +FV +L V++ L F K
Sbjct: 177 AGHIMPNTDQPFRINWASFSMGDRRSDIASDHS------IFVGDLASDVNDTTLLETFSK 230
Query: 154 -FGNIIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPG 211
+ ++ K+V D N G+SKG+GF++F A+ EMNG + ++ + + P
Sbjct: 231 RYSSVKGAKVVIDANTGRSKGYGFVRFGDDNEKTHAMTEMNG--VYCSTRPMRIGPATPR 288
Query: 212 KKVFPKVKPPLLQPARKN------KIFVANLPSNINNSEFEELFARFGTITSSSLVSDKH 265
K P AR + +FV L N++ + + F+++G I+S + K
Sbjct: 289 KTS--GTSGPTGSAARSDGDLTNTTVFVGGLDPNVSEDDLRQTFSQYGEISSVKIPVGKQ 346
Query: 266 IGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTL 298
GF++F+ K+A A+ +NG + ++++
Sbjct: 347 CGFVQFVQRKNAEDALQGLNGSTIGKQTVRLSW 379
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 110/215 (51%), Gaps = 20/215 (9%)
Query: 112 LKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRD-ENGKS 170
++P R+ P G +++ K ++V +L +DE L S F G ++ +K++R+ + G+S
Sbjct: 98 VRPALRAVPRGGGQEENKT--IWVGDLHYWMDENYLHSCFGYTGEVVAIKVIRNKQTGQS 155
Query: 171 KGFGFIQFFSYKAAEKAIIEMNGRMIQHNST--FVSLAEIVPGKKVFPKVKPPLLQPARK 228
+G+GF++F+S+ AAEK + G ++ + ++ A G + A
Sbjct: 156 EGYGFVEFYSHAAAEKVLEGFAGHIMPNTDQPFRINWASFSMGDR--------RSDIASD 207
Query: 229 NKIFVANLPSNINNSEFEELFA-RFGTITSSSLVSD------KHIGFIEFIMPKHATHAV 281
+ IFV +L S++N++ E F+ R+ ++ + +V D K GF+ F THA+
Sbjct: 208 HSIFVGDLASDVNDTTLLETFSKRYSSVKGAKVVIDANTGRSKGYGFVRFGDDNEKTHAM 267
Query: 282 STMNGHVFKSKPLKVTLSGTKPGVSITNPTKAPKK 316
+ MNG ++P+++ + + + PT + +
Sbjct: 268 TEMNGVYCSTRPMRIGPATPRKTSGTSGPTGSAAR 302
>gi|313226301|emb|CBY21445.1| unnamed protein product [Oikopleura dioica]
Length = 471
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/260 (24%), Positives = 124/260 (47%), Gaps = 25/260 (9%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L+V NL + L F G + D+++ + + + I + T A++A MN
Sbjct: 49 LYVGNLHKNATENVLKALFAVIGNVVDIKMINDAALSTSHYCFITYETHVGAQRALAAMN 108
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G + P+ + + ++P G ++ K +FV +L + + +L++ F KFG
Sbjct: 109 GRDVYKMPLKVNWA-------TRPDGIKKDTSKDHHIFVGDLAQELTTLDLQNEFEKFGK 161
Query: 157 IIEVKIVRD-ENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
I E ++VRD + +SKG+GF+ F ++AE AI EMN + I + A +K+
Sbjct: 162 ISEARVVRDAQTNRSKGYGFVAFLKKESAEMAITEMNNKSICGREVRTNWAT---SRKLP 218
Query: 216 PKVKPPLLQPAR--------KNKIFVANLPSNINNSE-FEELFARFGTITSSSLVSDKHI 266
P P ++ P + ++V + +++ + + F+RFG + + + +
Sbjct: 219 P---PTVIDPHKVAQASSFSNTTVYVGGITKDVHTQQVLQASFSRFGVV--EEVRTFETF 273
Query: 267 GFIEFIMPKHATHAVSTMNG 286
GF++ + AT+A+ MNG
Sbjct: 274 GFVKMQTHQAATNAICEMNG 293
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 101/217 (46%), Gaps = 22/217 (10%)
Query: 126 KQYKKDKVF-----VKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFS 180
+Q K D++F V NL + E LK+ F GN++++K++ D + + FI + +
Sbjct: 37 EQAKDDEIFKRTLYVGNLHKNATENVLKALFAVIGNVVDIKMINDAALSTSHYCFITYET 96
Query: 181 YKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNI 240
+ A++A+ MNGR + V+ A G K ++ + IFV +L +
Sbjct: 97 HVGAQRALAAMNGRDVYKMPLKVNWATRPDGIK---------KDTSKDHHIFVGDLAQEL 147
Query: 241 NNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
+ + F +FG I+ + +V D K GF+ F+ + A A++ MN + +
Sbjct: 148 TTLDLQNEFEKFGKISEARVVRDAQTNRSKGYGFVAFLKKESAEMAITEMNNKSICGREV 207
Query: 295 KVTLSGTK--PGVSITNPTKAPKKPAYIDEVKNVIGI 329
+ + ++ P ++ +P K + ++ + V GI
Sbjct: 208 RTNWATSRKLPPPTVIDPHKVAQASSFSNTTVYVGGI 244
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 82/170 (48%), Gaps = 13/170 (7%)
Query: 33 KENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKKA 91
K++ + V +L + L NEF+KFG + + RV R+ + + S+G+ + F A+ A
Sbjct: 134 KDHHIFVGDLAQELTTLDLQNEFEKFGKISEARVVRDAQTNRSKGYGFVAFLKKESAEMA 193
Query: 92 RVEMNGHLIGSKPVIITFVELKPGQRSKPVGP----EEKQYKKDKVFVKNLVETVDEEE- 146
EMN I + V + + + P + + V+V + + V ++
Sbjct: 194 ITEMNNKSICGREVRTNWATSRKLPPPTVIDPHKVAQASSFSNTTVYVGGITKDVHTQQV 253
Query: 147 LKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMI 196
L++ F +FG + EV+ + FGF++ +++AA AI EMNG I
Sbjct: 254 LQASFSRFGVVEEVRTF-------ETFGFVKMQTHQAATNAICEMNGASI 296
>gi|347967649|ref|XP_312633.5| AGAP002335-PA [Anopheles gambiae str. PEST]
gi|333468363|gb|EAA07505.5| AGAP002335-PA [Anopheles gambiae str. PEST]
Length = 458
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 70/273 (25%), Positives = 115/273 (42%), Gaps = 21/273 (7%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L+V NL+ SV + L F + GT++ ++ R + + FA I + A+ A MN
Sbjct: 10 LYVGNLDTSVTEELLCTLFSQMGTVKSCKIIRETSIDP--FAFIEYANHQSAQTALAAMN 67
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
+ K + + + Q P+ + +FV +L +D E L+ F FG
Sbjct: 68 KRMFLKKEIRVNWATSAGNQ------PKTDTSQHHHIFVGDLSPEIDTETLREAFAPFGE 121
Query: 157 IIEVKIVRD-ENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVP----- 210
I +IVRD + KS+G+ F+ F AE AI MNG+ + S + + P
Sbjct: 122 ISNCRIVRDPQTLKSRGYAFVSFVKKAEAENAIAMMNGQWLGSRSIRTNWSTRKPPAPRE 181
Query: 211 GKKVFPKVKPPLLQPARKNK------IFVANLPSN-INNSEFEELFARFGTITSSSLVSD 263
K K P + N ++ P N I + ++ FA+FG I + + D
Sbjct: 182 NSKGIKSGKTPGFEEIYNNTSPTNTTVYCGGFPPNAITDELIQKHFAQFGHINDTRVFKD 241
Query: 264 KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
K FI F + A A+ + + P+K
Sbjct: 242 KGYAFIRFASKESAARAIEGTHNSEVQGHPVKC 274
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 88/185 (47%), Gaps = 17/185 (9%)
Query: 125 EKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAA 184
E+ Y K ++V NL +V EE L + F + G + KI+R+ + F FI++ ++++A
Sbjct: 3 EESYPK-TLYVGNLDTSVTEELLCTLFSQMGTVKSCKIIRETS--IDPFAFIEYANHQSA 59
Query: 185 EKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSE 244
+ A+ MN RM V+ A + P ++ + IFV +L I+
Sbjct: 60 QTALAAMNKRMFLKKEIRVNWATSAGNQ--------PKTDTSQHHHIFVGDLSPEIDTET 111
Query: 245 FEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTL 298
E FA FG I++ +V D + F+ F+ A +A++ MNG S+ ++
Sbjct: 112 LREAFAPFGEISNCRIVRDPQTLKSRGYAFVSFVKKAEAENAIAMMNGQWLGSRSIRTNW 171
Query: 299 SGTKP 303
S KP
Sbjct: 172 STRKP 176
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 85/179 (47%), Gaps = 20/179 (11%)
Query: 25 NKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKND-ESRGFAIIVFN 83
N+ + + + V +L P +D + L F FG + + R+ R+ +SRG+A + F
Sbjct: 86 NQPKTDTSQHHHIFVGDLSPEIDTETLREAFAPFGEISNCRIVRDPQTLKSRGYAFVSFV 145
Query: 84 TPAEAKKARVEMNGHLIGSKPVIITFVELKP--------GQRSKPVGPEEKQYKKDK--- 132
AEA+ A MNG +GS+ + + KP G +S E+ Y
Sbjct: 146 KKAEAENAIAMMNGQWLGSRSIRTNWSTRKPPAPRENSKGIKSGKTPGFEEIYNNTSPTN 205
Query: 133 --VFVKNL-VETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAI 188
V+ + +E ++ HF +FG+I + ++ +D KG+ FI+F S ++A +AI
Sbjct: 206 TTVYCGGFPPNAITDELIQKHFAQFGHINDTRVFKD-----KGYAFIRFASKESAARAI 259
>gi|297799290|ref|XP_002867529.1| hypothetical protein ARALYDRAFT_913848 [Arabidopsis lyrata subsp.
lyrata]
gi|297313365|gb|EFH43788.1| hypothetical protein ARALYDRAFT_913848 [Arabidopsis lyrata subsp.
lyrata]
Length = 418
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 75/296 (25%), Positives = 128/296 (43%), Gaps = 35/296 (11%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDE-SRGFAIIVFNTPAEAKKARVEM 95
L + +L+P ++ L+N F G +V RNK S G+ I F A A++
Sbjct: 83 LWIGDLQPWMEENYLMNIFSLTGDATSAKVIRNKQSGYSEGYGFIEFVNHATAERILQAY 142
Query: 96 NGHLIGS--KPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHF-I 152
NG + S + + + +L G+R + GPE VFV +L V + L F
Sbjct: 143 NGTTMPSSDQAFRLNWAQLGAGERRQAEGPEHT------VFVGDLAPDVTDHMLTETFKA 196
Query: 153 KFGNIIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPG 211
+ ++ K+V D G+SKG+GF++F +A+ EMNG+ + S + G
Sbjct: 197 VYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQIRAMTEMNGQ-------YCSSRPMRTG 249
Query: 212 KKVFPKVKPPLLQPAR--------------KNKIFVANLPSNINNSEFEELFARFGTITS 257
KP +QPA IFV L ++ + + +F +FG +
Sbjct: 250 PAA--NKKPLTMQPASYQNTQGNQGESDPTNTTIFVGALDQSVIEDDLKSVFGQFGELVH 307
Query: 258 SSLVSDKHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKPGVSITNPTKA 313
+ + K GF+++ A A+S +NG + ++++ G P T P +A
Sbjct: 308 VKIPAGKRCGFVQYANRACAEQALSLLNGTQLGGQSIRLSW-GRSPSNKQTQPDQA 362
>gi|195429621|ref|XP_002062856.1| GK19472 [Drosophila willistoni]
gi|194158941|gb|EDW73842.1| GK19472 [Drosophila willistoni]
Length = 297
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 95/164 (57%), Gaps = 8/164 (4%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+++ NLE S+DN+A+ + F FG + + VA++++ SRG+ + F++ A+ A ++N
Sbjct: 105 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVN 164
Query: 97 GHLIGSKPV-IITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
G L ++ V ++ F+ + + +EK ++VKNL E E+ L+ F +G
Sbjct: 165 GMLCNNQKVHVVKFIPRRDRE-------QEKATHFKNLYVKNLSEEFTEQHLREMFEPYG 217
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHN 199
I K++ DE G+S+ FGF+ F S ++A A+I ++G+ + N
Sbjct: 218 RITSHKLMLDEEGRSRKFGFVAFESPQSALAAVIGLHGKQLGDN 261
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 78/160 (48%), Gaps = 13/160 (8%)
Query: 132 KVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEM 191
K+++KNL ++D + + F FGNI+ + +DE+G S+G+GF+ F S +AA AI ++
Sbjct: 104 KIYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKV 163
Query: 192 NGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFAR 251
NG + + V K P+ + ++V NL E+F
Sbjct: 164 NGMLCNNQKVHVV--------KFIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREMFEP 215
Query: 252 FGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNG 286
+G ITS L+ D + GF+ F P+ A AV ++G
Sbjct: 216 YGRITSHKLMLDEEGRSRKFGFVAFESPQSALAAVIGLHG 255
>gi|281340677|gb|EFB16261.1| hypothetical protein PANDA_006204 [Ailuropoda melanoleuca]
Length = 196
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 88/168 (52%), Gaps = 11/168 (6%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L V L +F G + +R+ R+ S G+A + F A+A+KA M
Sbjct: 4 LYVGDLSADVTEDLLFKKFSAVGPVLSIRICRDLVTRRSLGYAYVNFLKLADAQKALDTM 63
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N +I KP+ + + + R +G VF+KNL +++D + L HF FG
Sbjct: 64 NFDMIKGKPIRLMWSQRDAYLRKSGIG---------NVFIKNLDKSIDNKTLYEHFSAFG 114
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFV 203
I+ K++ D+ G S+G+ F+ F + AA++AI EMNG +++ FV
Sbjct: 115 KILSSKVMSDDQG-SRGYAFVHFQNQNAADRAIEEMNGALLKDCRLFV 161
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 78/171 (45%), Gaps = 20/171 (11%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEM 191
++V +L V E+ L F G ++ ++I RD +S G+ ++ F A+KA+ M
Sbjct: 4 LYVGDLSADVTEDLLFKKFSAVGPVLSIRICRDLVTRRSLGYAYVNFLKLADAQKALDTM 63
Query: 192 NGRMIQHNSTFVSLAEIVPGK--KVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELF 249
N MI+ GK ++ + L+ + +F+ NL +I+N E F
Sbjct: 64 NFDMIK-------------GKPIRLMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHF 110
Query: 250 ARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
+ FG I SS ++SD + F+ F A A+ MNG + K L V
Sbjct: 111 SAFGKILSSKVMSDDQGSRGYAFVHFQNQNAADRAIEEMNGALLKDCRLFV 161
>gi|356555656|ref|XP_003546146.1| PREDICTED: RNA-binding post-transcriptional regulator csx1-like
[Glycine max]
Length = 411
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/276 (23%), Positives = 123/276 (44%), Gaps = 19/276 (6%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKN-DESRGFAIIVFNTPAEAKKARVEM 95
L + +L+ +D L F G + V+V RNK +S G+ I FN+ A A++
Sbjct: 69 LWIGDLQYWMDENYLYTCFAHTGEVSSVKVIRNKQTSQSEGYGFIEFNSRAGAERILQTY 128
Query: 96 NGHLI--GSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHF-I 152
NG ++ G + + + G+RS+ + +FV +L V + L+ F
Sbjct: 129 NGAIMPNGGQSFRLNWATFSAGERSR-----QDDSPDYTIFVGDLAADVTDYLLQETFRA 183
Query: 153 KFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-IVP 210
++ ++ K+V D G++KG+GF++F +A+ EM G + + A P
Sbjct: 184 RYNSVKGAKVVIDRLTGRTKGYGFVRFSEESEQMRAMTEMQGVLCSTRPMRIGPASNKTP 243
Query: 211 GKKVFPKVKPPLLQP--------ARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
+ PK QP IFV NL N+ + ++F+++G + + +
Sbjct: 244 ATQSQPKASYLNSQPQGSQNENDPNNTTIFVGNLDPNVTDDHLRQVFSQYGELVHVKIPA 303
Query: 263 DKHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTL 298
K GF++F A A+ +NG + + ++++
Sbjct: 304 GKRCGFVQFADRSCAEEALRVLNGTLLGGQNVRLSW 339
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 97/199 (48%), Gaps = 22/199 (11%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRD-ENGKSKGFGFIQFFSYKAAEKAIIEM 191
+++ +L +DE L + F G + VK++R+ + +S+G+GFI+F S AE+ +
Sbjct: 69 LWIGDLQYWMDENYLYTCFAHTGEVSSVKVIRNKQTSQSEGYGFIEFNSRAGAERILQTY 128
Query: 192 NGRMIQHN--STFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELF 249
NG ++ + S ++ A G++ P IFV +L +++ + +E F
Sbjct: 129 NGAIMPNGGQSFRLNWATFSAGERSRQDDSP-------DYTIFVGDLAADVTDYLLQETF 181
Query: 250 -ARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
AR+ ++ + +V D K GF+ F A++ M G + ++P+++
Sbjct: 182 RARYNSVKGAKVVIDRLTGRTKGYGFVRFSEESEQMRAMTEMQGVLCSTRPMRI-----G 236
Query: 303 PGVSITNPTKAPKKPAYID 321
P + T T++ K +Y++
Sbjct: 237 PASNKTPATQSQPKASYLN 255
>gi|71745456|ref|XP_827358.1| poly(A)-binding protein 1 [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|4104919|gb|AAD13337.1| poly(A) binding protein I [Trypanosoma brucei]
gi|70831523|gb|EAN77028.1| poly(A)-binding protein 1 [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|261331563|emb|CBH14557.1| PABP2 [Trypanosoma brucei gambiense DAL972]
Length = 555
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 76/275 (27%), Positives = 129/275 (46%), Gaps = 23/275 (8%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
V L P+VD AL F K+G L + +A ++ ESRG+A I + A A E+NG
Sbjct: 100 VKKLPPTVDTYALKEMFSKYGRLTAIGLATDEKGESRGYARISYEKEESAVDAVRELNGV 159
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
I + + +R +P EE+ + ++VKNL +VD+E+LK F FG +
Sbjct: 160 SIDDCAITV--------ERYQPHHREEQLKQYTNLYVKNLDPSVDDEKLKEVFSPFGEVT 211
Query: 159 EVKIVRDENGK-SKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPK 217
K VRD G+ + GFG++ + +++AA KA+ E++ + + L+ + K
Sbjct: 212 SAK-VRDLAGRPTVGFGYVAYATHEAAAKAVEELDDKESPLAKEGMKLSVCRFRSREERK 270
Query: 218 VKPPLL------QPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDK------H 265
+ L Q ++ ++V N + + + LF FG S S++ DK
Sbjct: 271 RERERLRRERQQQHSKYPNLYVKNFDDTVTSERLKALFDPFGETVSVSVMMDKATKVSRC 330
Query: 266 IGFIEFIMPKHATHAVSTMNGHV-FKSKPLKVTLS 299
GF+ F A A+ ++G +PL V+ +
Sbjct: 331 FGFVSFKEQSSAAQAIQELHGSTALGPRPLFVSYA 365
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 120/244 (49%), Gaps = 21/244 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
+ V L+P+++ Q L + F + G + VRV + +S G+ + F PA+A+KA ++
Sbjct: 11 IWVGGLDPNLNEQKLYDHFVRVGPVASVRVCVDSVTQKSLGYGYVNFQNPADAEKA-LDQ 69
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
G +G+K + I ++ P +R V + VK L TVD LK F K+G
Sbjct: 70 AGVKLGTKHIRIAKIQRDPSKRRSGV---------TNIIVKKLPPTVDTYALKEMFSKYG 120
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
+ + + DE G+S+G+ I + ++A A+ E+NG I + V ++
Sbjct: 121 RLTAIGLATDEKGESRGYARISYEKEESAVDAVRELNGVSIDDCAITV--------ERYQ 172
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKHIGFIEFIMPK 275
P + L+ + ++V NL ++++ + +E+F+ FG +TS+ + + F
Sbjct: 173 PHHREEQLK--QYTNLYVKNLDPSVDDEKLKEVFSPFGEVTSAKVRDLAGRPTVGFGYVA 230
Query: 276 HATH 279
+ATH
Sbjct: 231 YATH 234
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 91/197 (46%), Gaps = 21/197 (10%)
Query: 15 GISDDEGARSNKENNKVYKENEL------HVNNLEPSVDNQALINEFKKFGTLRDVRVAR 68
G+S D+ A + + ++E +L +V NL+PSVD++ L F FG + +V
Sbjct: 158 GVSIDDCAITVERYQPHHREEQLKQYTNLYVKNLDPSVDDEKLKEVFSPFGEVTSAKVRD 217
Query: 69 NKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELK-----------PGQR 117
+ GF + + T A KA E++ P+ ++L +
Sbjct: 218 LAGRPTVGFGYVAYATHEAAAKAVEELDDK---ESPLAKEGMKLSVCRFRSREERKRERE 274
Query: 118 SKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGK-SKGFGFI 176
+++ K ++VKN +TV E LK+ F FG + V ++ D+ K S+ FGF+
Sbjct: 275 RLRRERQQQHSKYPNLYVKNFDDTVTSERLKALFDPFGETVSVSVMMDKATKVSRCFGFV 334
Query: 177 QFFSYKAAEKAIIEMNG 193
F +A +AI E++G
Sbjct: 335 SFKEQSSAAQAIQELHG 351
>gi|449469386|ref|XP_004152401.1| PREDICTED: polyadenylate-binding protein RBP47B'-like [Cucumis
sativus]
Length = 422
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 72/284 (25%), Positives = 125/284 (44%), Gaps = 28/284 (9%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L + +L+ VD L + F G + +++ RNK + G+ + F + A A++
Sbjct: 22 LWIGDLQYWVDESYLNSCFAHTGEVISIKIIRNKITGQPEGYGFVEFVSHAAAERILQTY 81
Query: 96 NG-HLIGSKPVI-ITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHF-I 152
NG + G++ + + G+R GPE +FV +L V + L+ F
Sbjct: 82 NGTQMPGTEQTFRLNWASFGIGERRPDAGPEHS------IFVGDLAPDVTDYLLQETFRA 135
Query: 153 KFGNIIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLA----- 206
++ ++ K+V D N G+SKG+GF++F +A+ EMNG +S A
Sbjct: 136 QYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMSEMNGVYCSTRPMRISAATPKKT 195
Query: 207 -----EIVPGKKVFP----KVKPPLLQP---ARKNKIFVANLPSNINNSEFEELFARFGT 254
+ GK ++P P+L A IFV NL NI E ++ F +FG
Sbjct: 196 IGVQQQYSLGKAMYPVPAYTTSVPVLPADYDANNTTIFVGNLDPNITEEELKQTFLQFGE 255
Query: 255 ITSSSLVSDKHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTL 298
I + + K GF++F A A+ M G + + ++ +
Sbjct: 256 IAYVKIPAGKGCGFVQFGTRASAEEAIQKMQGKIIGQQVVRTSW 299
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 103/205 (50%), Gaps = 22/205 (10%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEM 191
+++ +L VDE L S F G +I +KI+R++ G+ +G+GF++F S+ AAE+ +
Sbjct: 22 LWIGDLQYWVDESYLNSCFAHTGEVISIKIIRNKITGQPEGYGFVEFVSHAAAERILQTY 81
Query: 192 NG-RMIQHNSTF-VSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELF 249
NG +M TF ++ A G++ P P ++ IFV +L ++ + +E F
Sbjct: 82 NGTQMPGTEQTFRLNWASFGIGERR-PDAGP-------EHSIFVGDLAPDVTDYLLQETF 133
Query: 250 -ARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
A++ ++ + +V+D K GF++F A+S MNG ++P++++ + K
Sbjct: 134 RAQYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMSEMNGVYCSTRPMRISAATPK 193
Query: 303 PGVSITNPTKAPKK----PAYIDEV 323
+ + K PAY V
Sbjct: 194 KTIGVQQQYSLGKAMYPVPAYTTSV 218
>gi|148909135|gb|ABR17668.1| unknown [Picea sitchensis]
Length = 411
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 101/197 (51%), Gaps = 15/197 (7%)
Query: 26 KENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNT 84
++NN V ++ + L S + A F K+G L D + +++ + RGF + +
Sbjct: 33 EKNNDVSSPGKIFIGGLSRSTTSSAFTKHFSKYGELTDSVIMKDRLTGQPRGFGFVTYAD 92
Query: 85 PAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDE 144
P+ K V + H++ K V I +R+ P G K K KVFV + ++ E
Sbjct: 93 PSVIDK--VIQDKHILDGKTVEI--------KRTIPRGNSSKAPKTKKVFVGGIPTSITE 142
Query: 145 EELKSHFIKFGNIIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFV 203
+E K +F KFG ++E +I++D N G+S+GFGFI F + +A E+ I + GRM++ V
Sbjct: 143 DEFKDYFSKFGKVVEHQIMQDRNTGRSRGFGFITFETEQAVEEIISQ--GRMLELGGKQV 200
Query: 204 SLAEIVPGKKVFPKVKP 220
+ + P KK P P
Sbjct: 201 EIKKAEP-KKPLPDAGP 216
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 73/150 (48%), Gaps = 25/150 (16%)
Query: 132 KVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIE 190
K+F+ L + HF K+G + + I++D G+ +GFGF+ + A+ ++I+
Sbjct: 43 KIFIGGLSRSTTSSAFTKHFSKYGELTDSVIMKDRLTGQPRGFGFVTY-----ADPSVID 97
Query: 191 MNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARK---NKIFVANLPSNINNSEFEE 247
++IQ I+ GK V K P ++ K+FV +P++I EF++
Sbjct: 98 ---KVIQDK-------HILDGKTVEIKRTIPRGNSSKAPKTKKVFVGGIPTSITEDEFKD 147
Query: 248 LFARFGTITSSSLVSDKH------IGFIEF 271
F++FG + ++ D++ GFI F
Sbjct: 148 YFSKFGKVVEHQIMQDRNTGRSRGFGFITF 177
>gi|384491350|gb|EIE82546.1| hypothetical protein RO3G_07251 [Rhizopus delemar RA 99-880]
Length = 348
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 73/277 (26%), Positives = 131/277 (47%), Gaps = 29/277 (10%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVR---VARNKNDESRGFAIIVFNTPAEAKKARV 93
++V NL+ V + L F G + V+ V ++ N + + + F P A++A
Sbjct: 20 IYVGNLDQRVTDTMLNEIFTTVGQVVSVKIISVRKHNNFGAVNYGFVEFADPRVAEQAIQ 79
Query: 94 EMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDK-----VFVKNLVETVDEEELK 148
+MNG I + + + Q S + P + K+D VFV +L +++E+L
Sbjct: 80 DMNGRKIFNYEIRANWA-----QPSANINPPLQMTKEDTTNHFHVFVGDLAAEINDEKLA 134
Query: 149 SHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
F +FG + E ++ D +GKS+GFGF+ F AE+AI MNG + + A
Sbjct: 135 QAFSEFGTMSEAHVMWDPLSGKSRGFGFVAFRDKTDAERAIATMNGEWLGTRPIRCNWA- 193
Query: 208 IVPGKKVFPKVKPP-------LLQ--PARKNKIFVANLPSNINNSEFEELFARFGTITSS 258
G+ P +P ++Q PA I+V N+P N++ ++ + F RFG +
Sbjct: 194 TQKGQTAMPAPQPGQQLPYEVVVQQTPAYVTSIYVGNIPLNVSQNDLVQPFQRFGYVQEV 253
Query: 259 SLVSDKHIGFIEFIMPKHATHAV-----STMNGHVFK 290
+D+ F++ ++A +A+ ++NG+V K
Sbjct: 254 KFQADRGFAFVKMDTHENAANAIVHLQNMSINGNVTK 290
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 98/209 (46%), Gaps = 20/209 (9%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIV---RDENGKSKGFGFIQFFSYKAAEKAII 189
++V NL + V + L F G ++ VKI+ + N + +GF++F + AE+AI
Sbjct: 20 IYVGNLDQRVTDTMLNEIFTTVGQVVSVKIISVRKHNNFGAVNYGFVEFADPRVAEQAIQ 79
Query: 190 EMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELF 249
+MNGR I + + A+ P + P ++ +FV +L + IN+ + + F
Sbjct: 80 DMNGRKIFNYEIRANWAQ--PSANINPPLQMTKEDTTNHFHVFVGDLAAEINDEKLAQAF 137
Query: 250 ARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK- 302
+ FGT++ + ++ D + GF+ F A A++TMNG ++P++ + K
Sbjct: 138 SEFGTMSEAHVMWDPLSGKSRGFGFVAFRDKTDAERAIATMNGEWLGTRPIRCNWATQKG 197
Query: 303 --------PGVSITNPTKAPKKPAYIDEV 323
PG + + PAY+ +
Sbjct: 198 QTAMPAPQPGQQLPYEVVVQQTPAYVTSI 226
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 89/190 (46%), Gaps = 20/190 (10%)
Query: 35 NELHV--NNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKA 91
N HV +L ++++ L F +FGT+ + V + + +SRGF + F +A++A
Sbjct: 115 NHFHVFVGDLAAEINDEKLAQAFSEFGTMSEAHVMWDPLSGKSRGFGFVAFRDKTDAERA 174
Query: 92 RVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKD-----------KVFVKNLVE 140
MNG +G++P+ + K GQ + P +Q + ++V N+
Sbjct: 175 IATMNGEWLGTRPIRCNWATQK-GQTAMPAPQPGQQLPYEVVVQQTPAYVTSIYVGNIPL 233
Query: 141 TVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNS 200
V + +L F +FG + EVK D +GF F++ +++ A AI+ + I N
Sbjct: 234 NVSQNDLVQPFQRFGYVQEVKFQAD-----RGFAFVKMDTHENAANAIVHLQNMSINGNV 288
Query: 201 TFVSLAEIVP 210
T +S + P
Sbjct: 289 TKLSWGKDRP 298
>gi|356548971|ref|XP_003542872.1| PREDICTED: RNA-binding post-transcriptional regulator csx1-like
[Glycine max]
Length = 409
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 65/276 (23%), Positives = 122/276 (44%), Gaps = 19/276 (6%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L + +L+ +D L F G + V+V RNK +S G+ I FN+ A A++
Sbjct: 68 LWIGDLQYWMDENYLYTCFAHTGEVTSVKVIRNKQTSQSEGYGFIEFNSRAGAERILQTY 127
Query: 96 NGHLI--GSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHF-I 152
NG ++ G + + + G+RS+ +FV +L V + L+ F
Sbjct: 128 NGAIMPNGGQSFRLNWATFSAGERSR-----HDDSPDYTIFVGDLAADVTDYLLQETFRA 182
Query: 153 KFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-IVP 210
++ ++ K+V D G++KG+GF++F +A+ EM G + + A P
Sbjct: 183 RYNSVKGAKVVIDRLTGRTKGYGFVRFSDESEQVRAMTEMQGVLCSTRPMRIGPASNKTP 242
Query: 211 GKKVFPKVKPPLLQPA--------RKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
+ PK QP IFV NL N+ + ++F+++G + + +
Sbjct: 243 TTQSQPKASYQNSQPQGSQNENDPNNTTIFVGNLDPNVTDDHLRQVFSQYGELVHVKIPA 302
Query: 263 DKHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTL 298
K GF++F A A+ +NG + + ++++
Sbjct: 303 GKRCGFVQFADRSCAEEALRVLNGTLLGGQNVRLSW 338
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 91/188 (48%), Gaps = 17/188 (9%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRD-ENGKSKGFGFIQFFSYKAAEKAIIEM 191
+++ +L +DE L + F G + VK++R+ + +S+G+GFI+F S AE+ +
Sbjct: 68 LWIGDLQYWMDENYLYTCFAHTGEVTSVKVIRNKQTSQSEGYGFIEFNSRAGAERILQTY 127
Query: 192 NGRMIQHN--STFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELF 249
NG ++ + S ++ A G++ P IFV +L +++ + +E F
Sbjct: 128 NGAIMPNGGQSFRLNWATFSAGERSRHDDSPDY-------TIFVGDLAADVTDYLLQETF 180
Query: 250 -ARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
AR+ ++ + +V D K GF+ F A++ M G + ++P+++ + K
Sbjct: 181 RARYNSVKGAKVVIDRLTGRTKGYGFVRFSDESEQVRAMTEMQGVLCSTRPMRIGPASNK 240
Query: 303 PGVSITNP 310
+ + P
Sbjct: 241 TPTTQSQP 248
>gi|14571650|emb|CAC42811.1| Poly(A)-binding protein cytoplasmic 5 [Cricetulus griseus]
Length = 177
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 83/166 (50%), Gaps = 11/166 (6%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDES-RGFAIIVFNTPAEAKKARVEMNG 97
V +L P V L +F+ G LR R+ R+ S G+ + F PA+A+ A MN
Sbjct: 22 VGDLGPEVTEDMLYKKFRPAGPLRFTRICRDPVTHSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 98 HLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNI 157
LI KP + + + R VG +F+K+L +++D L F FGNI
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVG---------NIFIKHLDKSIDNRTLFYLFSAFGNI 132
Query: 158 IEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFV 203
+ K+V D+NG SKG+ ++ F S AA +AI MNG + + +V
Sbjct: 133 LSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVWLNNRQVYV 177
Score = 43.9 bits (102), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 69/167 (41%), Gaps = 16/167 (9%)
Query: 135 VKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSK-GFGFIQFFSYKAAEKAIIEMNG 193
V +L V E+ L F G + +I RD S G+G++ F AE A+ MN
Sbjct: 22 VGDLGPEVTEDMLYKKFRPAGPLRFTRICRDPVTHSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 194 RMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFG 253
+I N L P + L+ + IF+ +L +I+N LF+ FG
Sbjct: 82 DLI--NGKPFRLMWSQPDDR---------LRKSGVGNIFIKHLDKSIDNRTLFYLFSAFG 130
Query: 254 TITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
I S +V D K ++ F A A+ MNG ++ + V
Sbjct: 131 NILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGVWLNNRQVYV 177
>gi|340383337|ref|XP_003390174.1| PREDICTED: ELAV-like protein 3-like [Amphimedon queenslandica]
Length = 392
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 104/203 (51%), Gaps = 33/203 (16%)
Query: 122 GPEEKQYK-KDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDEN-GKSKGFGFIQFF 179
GP+ + K K + V L +T+ EE LK F +FG ++ K+++D++ G S G+GF+ +
Sbjct: 14 GPQNPETKAKTNLIVNYLPQTLTEEGLKQLFSQFGVVLSCKLIKDKSSGISLGYGFVNYG 73
Query: 180 SYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSN 239
S + AE AI +MNG ++ + VS A P + ++VANLP
Sbjct: 74 SAEEAEHAIQKMNGTTLESKTLKVSYAR-------------PSSVAIKNANVYVANLPPQ 120
Query: 240 INNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGH--VFKS 291
++ +E + LF +GTI +S +++D + +GF+ F A A++ +NG V +
Sbjct: 121 LSLTELDALFQPYGTIITSKVLTDEDTGAGRGVGFVRFDKYTQAEVAIAALNGKQLVGGT 180
Query: 292 KPLKV----------TLSGTKPG 304
+PL V L+GT PG
Sbjct: 181 QPLLVKFANPPKAATPLTGTVPG 203
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 48/104 (46%), Gaps = 5/104 (4%)
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A + G G P + + G S P + Y VFV NL ET + L
Sbjct: 276 AMAALTGMTTGV-PNLANLAPVAGGNGSTMTSPGDPSYC---VFVYNLPETCQDFLLYQL 331
Query: 151 FIKFGNIIEVKIVRD-ENGKSKGFGFIQFFSYKAAEKAIIEMNG 193
F FG I V ++RD ++G K +GF+ SY+ A AI+ +NG
Sbjct: 332 FSPFGAITSVNVIRDLKSGLCKRYGFVNMKSYEDACSAIMTLNG 375
Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 6/74 (8%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTM 284
+FV NLP + +LF+ FG ITS +++ D K GF+ + A A+ T+
Sbjct: 314 VFVYNLPETCQDFLLYQLFSPFGAITSVNVIRDLKSGLCKRYGFVNMKSYEDACSAIMTL 373
Query: 285 NGHVFKSKPLKVTL 298
NG+V K L+V+
Sbjct: 374 NGYVHDGKTLQVSF 387
>gi|170592088|ref|XP_001900801.1| RNA recognition motif. [Brugia malayi]
gi|158591668|gb|EDP30272.1| RNA recognition motif [Brugia malayi]
Length = 421
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 70/287 (24%), Positives = 126/287 (43%), Gaps = 31/287 (10%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
++V NL+PS+ + F + G + +V + ++ +A + F A +A MN
Sbjct: 76 VYVGNLDPSITEDFITTLFGQIGAVTKTKVIFDGTNDP--YAFVEFADHYTAAQALQAMN 133
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
++ K + + + +PG ++K K VFV +L VD + LK F FG
Sbjct: 134 KRVLLEKEMKVNWA-TEPGSQAKV-----DTSKHFHVFVGDLSPEVDNKALKDAFAPFGE 187
Query: 157 IIEVKIVRDENG-KSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVP----- 210
+ + K++RD KSKG+GF+ + + AE+AI +MNG+ + + + A P
Sbjct: 188 VSDAKVIRDATTLKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATRKPTGTGA 247
Query: 211 -----GKK------VFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSS 259
G+ V+ + P ++V N+ S+ N+ + F +FG I
Sbjct: 248 GDGQYGRSELNYDDVYNQTGPD------NTSVYVGNVNSSANDEDLRAAFDKFGRILEVR 301
Query: 260 LVSDKHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKPGVS 306
+ + F+ F A +A+ MNG + +K + T G S
Sbjct: 302 IFKSQGYAFVRFDKKDSACNAICKMNGQELCGQNIKCSWGRTPEGHS 348
>gi|312371659|gb|EFR19788.1| hypothetical protein AND_21810 [Anopheles darlingi]
Length = 440
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 69/273 (25%), Positives = 118/273 (43%), Gaps = 21/273 (7%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L+V NL+ SV + L F + GT++ ++ R +++ +A I + + A+ A MN
Sbjct: 10 LYVGNLDTSVTEELLCTLFSQMGTVKSCKIIREASNDP--YAFIEYASHTSAQTALAAMN 67
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
K + + + PG + P+ + +FV +L ++ E L+ F FG
Sbjct: 68 KRFFLKKEIKVNWA-TSPGNQ-----PKTDTSQHYHIFVGDLSPEIETETLREAFAPFGE 121
Query: 157 IIEVKIVRD-ENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVP----- 210
I +IVRD + KS+G+ F+ F AE AI MNG+ + S + + P
Sbjct: 122 ISNCRIVRDPQTLKSRGYAFVSFVKKAEAENAIQMMNGQWLGSRSIRTNWSTRKPPAPRD 181
Query: 211 GKKVFPKVKPPLLQPARKNK------IFVANLPSN-INNSEFEELFARFGTITSSSLVSD 263
K K P + N ++ P N I + ++ FA+FG I + + D
Sbjct: 182 NSKGIKSGKTPGFEEIYNNTSPTNTTVYCGGFPPNTITDELIQKHFAQFGQIHDTRVFKD 241
Query: 264 KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
K FI F + A A+ + + P+K
Sbjct: 242 KGYAFIRFANKESAARAIEGTHNSEVQGHPVKC 274
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 85/185 (45%), Gaps = 17/185 (9%)
Query: 125 EKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAA 184
E+ Y K ++V NL +V EE L + F + G + KI+R+ + + FI++ S+ +A
Sbjct: 3 EESYPK-TLYVGNLDTSVTEELLCTLFSQMGTVKSCKIIRE--ASNDPYAFIEYASHTSA 59
Query: 185 EKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSE 244
+ A+ MN R V+ A PG + P ++ IFV +L I
Sbjct: 60 QTALAAMNKRFFLKKEIKVNWA-TSPGNQ-------PKTDTSQHYHIFVGDLSPEIETET 111
Query: 245 FEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTL 298
E FA FG I++ +V D + F+ F+ A +A+ MNG S+ ++
Sbjct: 112 LREAFAPFGEISNCRIVRDPQTLKSRGYAFVSFVKKAEAENAIQMMNGQWLGSRSIRTNW 171
Query: 299 SGTKP 303
S KP
Sbjct: 172 STRKP 176
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 84/179 (46%), Gaps = 20/179 (11%)
Query: 25 NKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKND-ESRGFAIIVFN 83
N+ + + V +L P ++ + L F FG + + R+ R+ +SRG+A + F
Sbjct: 86 NQPKTDTSQHYHIFVGDLSPEIETETLREAFAPFGEISNCRIVRDPQTLKSRGYAFVSFV 145
Query: 84 TPAEAKKARVEMNGHLIGSKPVIITFVELKP--------GQRSKPVGPEEKQYKKDK--- 132
AEA+ A MNG +GS+ + + KP G +S E+ Y
Sbjct: 146 KKAEAENAIQMMNGQWLGSRSIRTNWSTRKPPAPRDNSKGIKSGKTPGFEEIYNNTSPTN 205
Query: 133 --VFVKNL-VETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAI 188
V+ T+ +E ++ HF +FG I + ++ +D KG+ FI+F + ++A +AI
Sbjct: 206 TTVYCGGFPPNTITDELIQKHFAQFGQIHDTRVFKD-----KGYAFIRFANKESAARAI 259
>gi|19549690|ref|NP_599125.1| RNA-binding protein 9, isoform E [Drosophila melanogaster]
gi|19549692|ref|NP_599126.1| RNA-binding protein 9, isoform F [Drosophila melanogaster]
gi|62471589|ref|NP_001014462.1| RNA-binding protein 9, isoform G [Drosophila melanogaster]
gi|221330652|ref|NP_476936.3| RNA-binding protein 9, isoform H [Drosophila melanogaster]
gi|158227|gb|AAC13646.1| RNA-binding protein [Drosophila melanogaster]
gi|22945352|gb|AAN10402.1| RNA-binding protein 9, isoform E [Drosophila melanogaster]
gi|22945353|gb|AAN10403.1| RNA-binding protein 9, isoform F [Drosophila melanogaster]
gi|40714603|gb|AAR88559.1| GH26440p [Drosophila melanogaster]
gi|61678275|gb|AAX52651.1| RNA-binding protein 9, isoform G [Drosophila melanogaster]
gi|220901921|gb|AAN10401.3| RNA-binding protein 9, isoform H [Drosophila melanogaster]
gi|220951536|gb|ACL88311.1| Rbp9-PE [synthetic construct]
Length = 439
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 92/176 (52%), Gaps = 20/176 (11%)
Query: 130 KDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAI 188
K + V L +T+ ++E++S F+ FG + K++RD+ G+S G+GF+ + + AEKAI
Sbjct: 109 KTNLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKAI 168
Query: 189 IEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEEL 248
+NG +Q+ + VS+A P + + ++V+ LP N+ S+ E L
Sbjct: 169 NALNGLRLQNKTIKVSIAR-------------PSSESIKGANLYVSGLPKNMTQSDLESL 215
Query: 249 FARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTL 298
F+ +G I +S ++ D K +GFI F A A+ +NG K+ +T+
Sbjct: 216 FSPYGKIITSRILCDNITGLSKGVGFIRFDQRFEADRAIKELNGTTPKNSTEPITV 271
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 78/159 (49%), Gaps = 13/159 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L VN L ++ + + F FG + ++ R+K +S G+ + + +A+KA +
Sbjct: 112 LIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKAINAL 171
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
NG + +K + ++ P + K ++V L + + + +L+S F +G
Sbjct: 172 NGLRLQNKTIKVSIAR-----------PSSESIKGANLYVSGLPKNMTQSDLESLFSPYG 220
Query: 156 NIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEMNG 193
II +I+ D G SKG GFI+F A++AI E+NG
Sbjct: 221 KIITSRILCDNITGLSKGVGFIRFDQRFEADRAIKELNG 259
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRD-ENGKSKGFGFIQFFSYKAAEKAIIEM 191
+FV NL +E L F FG + VK++RD ++ K KGFGF+ +Y+ A AI +
Sbjct: 358 IFVYNLAPDTEENVLWQLFGPFGAVQSVKVIRDLQSNKCKGFGFVTMTNYEEAVLAIQSL 417
Query: 192 NGRMI 196
NG +
Sbjct: 418 NGYTL 422
Score = 45.1 bits (105), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
Query: 224 QPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDK------HIGFIEFIMPKHA 277
+P K + V LP ++ E LF FG + S L+ DK GF+ ++ + A
Sbjct: 105 EPDPKTNLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDA 164
Query: 278 THAVSTMNGHVFKSKPLKVTLS 299
A++ +NG ++K +KV+++
Sbjct: 165 EKAINALNGLRLQNKTIKVSIA 186
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKKARVEM 95
+ V NL P + L F FG ++ V+V R+ ++++ +GF + EA A +
Sbjct: 358 IFVYNLAPDTEENVLWQLFGPFGAVQSVKVIRDLQSNKCKGFGFVTMTNYEEAVLAIQSL 417
Query: 96 NGHLIGSKPVIITF 109
NG+ +G++ + ++F
Sbjct: 418 NGYTLGNRVLQVSF 431
>gi|312086091|ref|XP_003144941.1| hypothetical protein LOAG_09365 [Loa loa]
Length = 394
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 69/285 (24%), Positives = 125/285 (43%), Gaps = 31/285 (10%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
++V NL+PS+ + F + G + +V + ++ +A + F A +A MN
Sbjct: 49 VYVGNLDPSITEDFITTLFGQIGAVTKTKVIFDGTNDP--YAFVEFADHYTAAQALQAMN 106
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
++ K + + + +PG ++K K VFV +L VD + LK F FG
Sbjct: 107 KRVLLEKEMKVNWA-TEPGSQAKV-----DTSKHFHVFVGDLSPEVDNKALKDAFAPFGE 160
Query: 157 IIEVKIVRDENG-KSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVP----- 210
+ + K++RD KSKG+GF+ + + AE+AI +MNG+ + + + A P
Sbjct: 161 VSDAKVIRDATTLKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATRKPTGTGA 220
Query: 211 -----GK------KVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSS 259
G+ V+ + P ++V N+ S+ N+ + F +FG I
Sbjct: 221 GDGQYGRTELNYDDVYNQTGPD------NTSVYVGNVNSSANDEDLRAAFDKFGRILEVR 274
Query: 260 LVSDKHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKPG 304
+ + F+ F A +A+ MNG + +K + T G
Sbjct: 275 IFKSQGYAFVRFDKKDSACNAICKMNGQELCGQNIKCSWGRTPEG 319
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 47/214 (21%), Positives = 97/214 (45%), Gaps = 18/214 (8%)
Query: 121 VGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFS 180
G E+ Q + V+V NL ++ E+ + + F + G + + K++ D G + + F++F
Sbjct: 39 TGSEDHQPRT--VYVGNLDPSITEDFITTLFGQIGAVTKTKVIFD--GTNDPYAFVEFAD 94
Query: 181 YKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNI 240
+ A +A+ MN R++ V+ A PG + + ++ +FV +L +
Sbjct: 95 HYTAAQALQAMNKRVLLEKEMKVNWA-TEPGSQA-------KVDTSKHFHVFVGDLSPEV 146
Query: 241 NNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
+N ++ FA FG ++ + ++ D K GF+ + + A A+ MNG + +
Sbjct: 147 DNKALKDAFAPFGEVSDAKVIRDATTLKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTI 206
Query: 295 KVTLSGTKPGVSITNPTKAPKKPAYIDEVKNVIG 328
+ + KP + + + D+V N G
Sbjct: 207 RTNWATRKPTGTGAGDGQYGRTELNYDDVYNQTG 240
>gi|195161932|ref|XP_002021810.1| GL26299 [Drosophila persimilis]
gi|194103610|gb|EDW25653.1| GL26299 [Drosophila persimilis]
Length = 678
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 92/176 (52%), Gaps = 20/176 (11%)
Query: 130 KDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAI 188
K + V L +T+ ++E++S F+ FG + K++RD+ G+S G+GF+ + + AEKAI
Sbjct: 109 KTNLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKAI 168
Query: 189 IEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEEL 248
+NG +Q+ + VS+A P + + ++V+ LP N+ S+ E L
Sbjct: 169 NALNGLRLQNKTIKVSIAR-------------PSSESIKGANLYVSGLPKNMTQSDLESL 215
Query: 249 FARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTL 298
F+ +G I +S ++ D K +GFI F A A+ +NG K+ +T+
Sbjct: 216 FSPYGKIITSRILCDNITGLSKGVGFIRFDQRFEADRAIKELNGTTPKNSTEPITV 271
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 71/328 (21%), Positives = 130/328 (39%), Gaps = 80/328 (24%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L VN L ++ + + F FG + ++ R+K +S G+ + + +A+KA +
Sbjct: 112 LIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKAINAL 171
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
NG + +K + ++ P + K ++V L + + + +L+S F +G
Sbjct: 172 NGLRLQNKTIKVSIAR-----------PSSESIKGANLYVSGLPKNMTQSDLESLFSPYG 220
Query: 156 NIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL--------- 205
II +I+ D G SKG GFI+F A++AI E+NG ++++ +++
Sbjct: 221 KIITSRILCDNITGLSKGVGFIRFDQRFEADRAIKELNGTTPKNSTEPITVKFANNPSSN 280
Query: 206 --------AEIVP----GKKVFPK--------------VKP-------------PLLQPA 226
A I P G + FP + P PL
Sbjct: 281 KNSMQPLAAYIAPQNTRGGRAFPTNAAAGAAAAAAAAAIHPNAGRYSSVISRYSPLTSDL 340
Query: 227 RKNKI-------------FVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIG 267
N + FV NL + +LF FG + S ++ D K G
Sbjct: 341 ITNGMIQGNTIASSGWCIFVYNLAPETEENVLWQLFGPFGAVQSVKVIRDLQSNKCKGFG 400
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLK 295
F+ + A A+ ++NG+ ++ L+
Sbjct: 401 FVTMTNYEEAVLAIQSLNGYTLGNRVLQ 428
Score = 43.9 bits (102), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
Query: 224 QPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDK------HIGFIEFIMPKHA 277
+P K + V LP ++ E LF FG + S L+ DK GF+ ++ + A
Sbjct: 105 EPDPKTNLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDA 164
Query: 278 THAVSTMNGHVFKSKPLKVTLS 299
A++ +NG ++K +KV+++
Sbjct: 165 EKAINALNGLRLQNKTIKVSIA 186
>gi|340056243|emb|CCC50573.1| putative polyadenylate-binding protein 1 [Trypanosoma vivax Y486]
Length = 482
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 73/283 (25%), Positives = 127/283 (44%), Gaps = 35/283 (12%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ V NL+ VD++ L FK+FG + +V ++ SRG+ + F AK A MN
Sbjct: 17 IFVKNLKGEVDSRELSVIFKRFGEILSCKVMSDEGGRSRGYGFVHFKDDTAAKNAIESMN 76
Query: 97 G---HLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIK 153
G H +K + ++ R + V++K L+ TV+++ ++ F K
Sbjct: 77 GDKEHADAAKAALYVANFIRRNARLAALVANFT-----NVYIKQLLPTVNKDTIEKFFSK 131
Query: 154 FGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKK 213
FG I +D+NG++ F F F + A KAI + ++I+ + PG+K
Sbjct: 132 FGGITSAATCKDKNGRA--FAFCNFEKHDDAVKAIEAFHDQVIEGVTP--------PGEK 181
Query: 214 VFPKVKPP----LLQPARK--------NKIFVANLPSNINNSEFEELFARFGTITSSSLV 261
++ + P L+ +K N ++V N + + LF +GTI S ++
Sbjct: 182 LYVQRAQPRSERLIALRQKYMQCQSLGNNLYVRNFDVEFSEKDLHVLFEEYGTIRSCRVM 241
Query: 262 SD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299
+D + GF+ F A A+ MNG + KPL V ++
Sbjct: 242 TDANGNSRGFGFVSFENADQANAALREMNGRMLNGKPLIVNIA 284
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 82/183 (44%), Gaps = 15/183 (8%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMN 192
+FVKNL VD EL F +FG I+ K++ DE G+S+G+GF+ F AA+ AI MN
Sbjct: 17 IFVKNLKGEVDSRELSVIFKRFGEILSCKVMSDEGGRSRGYGFVHFKDDTAAKNAIESMN 76
Query: 193 GRMIQHNSTFVSL--AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFA 250
G ++ +L A + + A +++ L +N E+ F+
Sbjct: 77 GDKEHADAAKAALYVANFIRRNARLAALV------ANFTNVYIKQLLPTVNKDTIEKFFS 130
Query: 251 RFGTITSSSLVSDKH---IGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKPGVSI 307
+FG ITS++ DK+ F F A A+ + V + VT G K V
Sbjct: 131 KFGGITSAATCKDKNGRAFAFCNFEKHDDAVKAIEAFHDQVIEG----VTPPGEKLYVQR 186
Query: 308 TNP 310
P
Sbjct: 187 AQP 189
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 85/177 (48%), Gaps = 8/177 (4%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+++ L P+V+ + F KFG + ++KN R FA F +A KA +
Sbjct: 111 VYIKQLLPTVNKDTIEKFFSKFGGITSAATCKDKN--GRAFAFCNFEKHDDAVKAIEAFH 168
Query: 97 GHLI-GSKPVIITFVELKPGQRSKPVGPEEKQYKK-----DKVFVKNLVETVDEEELKSH 150
+I G P + RS+ + ++Y + + ++V+N E++L
Sbjct: 169 DQVIEGVTPPGEKLYVQRAQPRSERLIALRQKYMQCQSLGNNLYVRNFDVEFSEKDLHVL 228
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
F ++G I +++ D NG S+GFGF+ F + A A+ EMNGRM+ V++A+
Sbjct: 229 FEEYGTIRSCRVMTDANGNSRGFGFVSFENADQANAALREMNGRMLNGKPLIVNIAQ 285
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 42/79 (53%)
Query: 35 NELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVE 94
N L+V N + + L F+++GT+R RV + N SRGF + F +A A E
Sbjct: 209 NNLYVRNFDVEFSEKDLHVLFEEYGTIRSCRVMTDANGNSRGFGFVSFENADQANAALRE 268
Query: 95 MNGHLIGSKPVIITFVELK 113
MNG ++ KP+I+ + +
Sbjct: 269 MNGRMLNGKPLIVNIAQRR 287
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Query: 219 KPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIM 273
+ P L+ + IFV NL +++ E +F RFG I S ++SD + GF+ F
Sbjct: 5 RDPALRYSGNGNIFVKNLKGEVDSRELSVIFKRFGEILSCKVMSDEGGRSRGYGFVHFKD 64
Query: 274 PKHATHAVSTMNG 286
A +A+ +MNG
Sbjct: 65 DTAAKNAIESMNG 77
>gi|294884878|gb|ADF47447.1| TIA1-like protein [Dugesia japonica]
Length = 323
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 76/283 (26%), Positives = 126/283 (44%), Gaps = 19/283 (6%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
++V NL +V++Q LI F FG + R+ + ++ +A I + + A A M+
Sbjct: 9 IYVGNLPDAVNDQLLIRIFGNFGQCISCHIIRDFSCQTNPYAFIEYTDHSSASLALSAMD 68
Query: 97 GHLIGSKPVIITFVELKPGQRSKP--VGPEEKQYKKD-KVFVKNLVETVDEEELKSHFIK 153
G + + + + + P P V + Y ++FV ++ VDE LK F +
Sbjct: 69 GIYMWNNQIKVNWSS-GPSAVPGPAAVASAKIDYSNSVQIFVGDIGLDVDEPMLKEGFSQ 127
Query: 154 FGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPG-- 211
FG +I+ K+VR +G+S+GF F+ F + AE+AI M+ HN T G
Sbjct: 128 FGQLIDAKVVRYPDGQSRGFAFVSFSNRDEAERAIQSMHKTWF-HNRTIKCNWATRNGLD 186
Query: 212 KKVFPKVKPPLLQ------PARKNKIFVA--NLPSNINNSEFEELFARFGTITSSSLVSD 263
+ F K P + P ++VA NL + N F+E FG I S + +
Sbjct: 187 GEQFIKYTPRPYELVYKEAPLTNTNVYVAGENLTEELLNCHFQE----FGRIDSVKVYPE 242
Query: 264 KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKPGVS 306
K FI F+ + A A+S +G+ +K G+S
Sbjct: 243 KGHAFINFVTHEAAARAISQRHGYKINDNVIKCNWGKENFGIS 285
>gi|326429915|gb|EGD75485.1| poly(A)-binding protein [Salpingoeca sp. ATCC 50818]
Length = 1688
Score = 87.8 bits (216), Expect = 6e-15, Method: Composition-based stats.
Identities = 75/262 (28%), Positives = 119/262 (45%), Gaps = 28/262 (10%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L P V+ L N F G++ VRV R++ S G+ + FN +A+ A ++
Sbjct: 250 LYVGDLSPQVNETELFNLFSSIGSVMSVRVCRDQITHGSLGYGYVNFNKAEDAEAAMGQL 309
Query: 96 NGHLIGSKPVIITFVELKPGQR-SKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKF 154
N H + + + I VE P +R S P + V L L+ F +F
Sbjct: 310 NFHDLHGRHIRIMKVERDPKKRRSDP----------RNIVVTGLPADTTSVHLRDTFEQF 359
Query: 155 GNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKV 214
G I+ K V D +G+ +GFGF+ F K AE+AI E NG+ + + P K
Sbjct: 360 GKILSCKAVLDHSGRCRGFGFVHFEDPKVAERAIAEANGKDAGGDRKL----RVAPFK-- 413
Query: 215 FPKVKPPLLQPAR-KN--KIFVANLPSNINNSEFEELFARFGTITSSSLV------SDKH 265
P+ + Q R KN ++V +L + + E +LF +G ITS +L +++
Sbjct: 414 -PRKQREQEQEERTKNFTNVYVKSLRRDADEEELGKLFEPYGDITSKALRTYKLKDTERP 472
Query: 266 IGFIEFIMPKHATHAVSTMNGH 287
GF+ F + A V H
Sbjct: 473 YGFVNFADTEAAQKCVEEGEMH 494
Score = 59.3 bits (142), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/73 (39%), Positives = 47/73 (64%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMN 192
+FVKN E V EE+L+ F + G++I+VK++RD G S+ FGF+ F + + AE AI + N
Sbjct: 609 LFVKNFNENVTEEDLRKFFEECGHVIDVKVMRDMEGVSRCFGFVIFATREEAESAIAKKN 668
Query: 193 GRMIQHNSTFVSL 205
+ +Q +V+
Sbjct: 669 RQTLQDRPIYVAF 681
Score = 42.0 bits (97), Expect = 0.37, Method: Composition-based stats.
Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L V N +V + L F++ G + DV+V R+ SR F ++F T EA+ A + N
Sbjct: 609 LFVKNFNENVTEEDLRKFFEECGHVIDVKVMRDMEGVSRCFGFVIFATREEAESAIAKKN 668
Query: 97 GHLIGSKPVIITFVELKPGQRSK--PVGPEEKQY 128
+ +P+ + F L +R K P P++ Y
Sbjct: 669 RQTLQDRPIYVAF-HLTRQERCKQQPQHPQQGVY 701
>gi|148907319|gb|ABR16796.1| unknown [Picea sitchensis]
Length = 387
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 73/291 (25%), Positives = 130/291 (44%), Gaps = 31/291 (10%)
Query: 33 KENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDE-SRGFAIIVFNTPAEAKKA 91
+ +L+V NL S D L F++FGT+ V V RN+ SRGFA + +T EAK A
Sbjct: 92 RRTKLYVGNLPRSCDIAQLTQLFQEFGTVESVEVVRNEETGISRGFAFVTMSTVKEAKSA 151
Query: 92 RVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKD--KVFVKNLVETVDEEELKS 149
++ G +G + +I+ F P + + Y + ++FV NL +V +E LKS
Sbjct: 152 IEKLQGSDLGGRDMIVNF----PAKVLSKKKETDDSYIETPYQLFVGNLAWSVKKEILKS 207
Query: 150 HFIKFGNIIEVKIVRD-ENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEI 208
F + GN+ K++ + G + FGF+ S E AI+ ++G+ + V A
Sbjct: 208 LFSQHGNVSAAKVIYSGKGGVPRAFGFVCLSSQSEMEDAIVSLHGKEFHGRNLKVRQARP 267
Query: 209 VPGKKVFPKVKPPLLQPARKNK-----------------IFVANLPSNINNSEFEELFAR 251
V V+ + +P+ + ++V+NL ++ N ELF++
Sbjct: 268 TSKDMVVSDVEENIAKPSTMVEDSMTETVKATFVGSAYGVYVSNLSLSVKNKALSELFSQ 327
Query: 252 FGTITSSSLV------SDKHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
G + + ++ + GF+ F A++ ++ F + L V
Sbjct: 328 HGNVLDARVLYARKAGRSRPYGFVNFSSQAEVEAAIAALDKKEFYERKLVV 378
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 87/185 (47%), Gaps = 11/185 (5%)
Query: 119 KPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVR-DENGKSKGFGFIQ 177
+P EE ++ K++V NL + D +L F +FG + V++VR +E G S+GF F+
Sbjct: 82 QPKNEEELPPRRTKLYVGNLPRSCDIAQLTQLFQEFGTVESVEVVRNEETGISRGFAFVT 141
Query: 178 FFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLP 237
+ K A+ AI ++ G + V+ P K + K + ++FV NL
Sbjct: 142 MSTVKEAKSAIEKLQGSDLGGRDMIVNF----PAKVLSKKKETDDSYIETPYQLFVGNLA 197
Query: 238 SNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKS 291
++ + LF++ G ++++ ++ + GF+ A+ +++G F
Sbjct: 198 WSVKKEILKSLFSQHGNVSAAKVIYSGKGGVPRAFGFVCLSSQSEMEDAIVSLHGKEFHG 257
Query: 292 KPLKV 296
+ LKV
Sbjct: 258 RNLKV 262
Score = 43.9 bits (102), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 83/190 (43%), Gaps = 23/190 (12%)
Query: 26 KENNKVYKEN--ELHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVF 82
KE + Y E +L V NL SV + L + F + G + +V + K R F +
Sbjct: 178 KETDDSYIETPYQLFVGNLAWSVKKEILKSLFSQHGNVSAAKVIYSGKGGVPRAFGFVCL 237
Query: 83 NTPAEAKKARVEMNGHLI------------GSKPVIITFVELKPGQRSKPVGPEEKQYKK 130
++ +E + A V ++G SK ++++ VE + S V + K
Sbjct: 238 SSQSEMEDAIVSLHGKEFHGRNLKVRQARPTSKDMVVSDVEENIAKPSTMVEDSMTETVK 297
Query: 131 DK-------VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDEN-GKSKGFGFIQFFSYK 182
V+V NL +V + L F + GN+++ +++ G+S+ +GF+ F S
Sbjct: 298 ATFVGSAYGVYVSNLSLSVKNKALSELFSQHGNVLDARVLYARKAGRSRPYGFVNFSSQA 357
Query: 183 AAEKAIIEMN 192
E AI ++
Sbjct: 358 EVEAAIAALD 367
>gi|401887565|gb|EJT51549.1| non-translatable mRNA -binding protein [Trichosporon asahii var.
asahii CBS 2479]
gi|406699766|gb|EKD02963.1| non-translatable mRNA -binding protein [Trichosporon asahii var.
asahii CBS 8904]
Length = 381
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 69/294 (23%), Positives = 130/294 (44%), Gaps = 27/294 (9%)
Query: 24 SNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGF--AIIV 81
SN + + K+ L++ N+ P V +Q L F G + ++ +++N G+ +
Sbjct: 2 SNNQAAEAPKKPHLYIGNMSPRVTDQMLAEIFSVAGPVVSAKIIQDRNFHHGGYNYGFVE 61
Query: 82 FNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVET 141
+ A++A +NG I + + + G R E+ Q+ VFV +L
Sbjct: 62 YTDMRSAEQALTTLNGRKIFDSEIRVNWAYQGQGNR------EDTQHHF-HVFVGDLSPE 114
Query: 142 VDEEELKSHFIKFGNIIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAIIEMNG-----RM 195
V+++ L F KF ++ E +++ D N GKS+G+GF+ F AE+AI MNG R
Sbjct: 115 VNDDILGKAFAKFASLSEARVMWDMNSGKSRGYGFLSFRDKADAEQAIATMNGEWLGSRA 174
Query: 196 IQHN----------STFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEF 245
I+ N S + L + G F +V P ++V NL ++
Sbjct: 175 IRVNWANQKTQTGGSRSLGLGQGFNGPLTFEQVA--AQTPDYNTTVYVGNLIPYTTQADL 232
Query: 246 EELFARFGTITSSSLVSDKHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299
LF +G I + +D+ F++ +A +++++ + +P+K +
Sbjct: 233 IPLFQNYGYIVEIRMQADRGFAFVKLDTHANAALSITSLQNQLVHGRPIKCSWG 286
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 86/182 (47%), Gaps = 17/182 (9%)
Query: 129 KKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGF--GFIQFFSYKAAEK 186
KK +++ N+ V ++ L F G ++ KI++D N G+ GF+++ ++AE+
Sbjct: 11 KKPHLYIGNMSPRVTDQMLAEIFSVAGPVVSAKIIQDRNFHHGGYNYGFVEYTDMRSAEQ 70
Query: 187 AIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFE 246
A+ +NGR I + V+ A G + +FV +L +N+
Sbjct: 71 ALTTLNGRKIFDSEIRVNWAYQGQGNRE---------DTQHHFHVFVGDLSPEVNDDILG 121
Query: 247 ELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSG 300
+ FA+F +++ + ++ D + GF+ F A A++TMNG S+ ++V +
Sbjct: 122 KAFAKFASLSEARVMWDMNSGKSRGYGFLSFRDKADAEQAIATMNGEWLGSRAIRVNWAN 181
Query: 301 TK 302
K
Sbjct: 182 QK 183
>gi|125548504|gb|EAY94326.1| hypothetical protein OsI_16094 [Oryza sativa Indica Group]
Length = 426
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 65/284 (22%), Positives = 124/284 (43%), Gaps = 18/284 (6%)
Query: 21 GARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAI 79
G +EN ++ V +L+ +D L + F G + ++V RN+ +S G+
Sbjct: 96 GGNGCEENKTIW------VGDLQYWMDENYLHSCFGPSGEVVTIKVIRNRQTGQSEGYGF 149
Query: 80 IVFNTPAEAKKARVEMNGHLI--GSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKN 137
+ F + A+KA GH++ +P + + G++ V + +FV +
Sbjct: 150 VEFYSHGSAEKALQNFTGHVMPNTDRPFKLNWASYSMGEKRSEVASDYS------IFVGD 203
Query: 138 LVETVDEEELKSHFI-KFGNIIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAIIEMNGRM 195
L V +E L F K+ ++ K++ D N G+S+G+GF++F A+ EMNG
Sbjct: 204 LAADVTDEMLMELFANKYRSVKGAKVIIDANTGRSRGYGFVRFGDDNDKSHAMTEMNGAY 263
Query: 196 IQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNK-IFVANLPSNINNSEFEELFARFGT 254
+ A P N+ ++V L N++ E + FA++G
Sbjct: 264 CSTRPIRIGPATPRRSSGDSGSSTPGHSDGDSTNRTVYVGGLDPNVSEDELRKAFAKYGD 323
Query: 255 ITSSSLVSDKHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTL 298
+ S + K GF++F+ A A+ +NG V + ++++
Sbjct: 324 VASVKIPLGKQCGFVQFVSRTDAEEALQGLNGSVIGKQAVRLSW 367
>gi|116310076|emb|CAH67097.1| H0818E04.14 [Oryza sativa Indica Group]
Length = 426
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 65/284 (22%), Positives = 124/284 (43%), Gaps = 18/284 (6%)
Query: 21 GARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAI 79
G +EN ++ V +L+ +D L + F G + ++V RN+ +S G+
Sbjct: 96 GGNGCEENKTIW------VGDLQYWMDENYLHSCFGPSGEVVTIKVIRNRQTGQSEGYGF 149
Query: 80 IVFNTPAEAKKARVEMNGHLI--GSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKN 137
+ F + A+KA GH++ +P + + G++ V + +FV +
Sbjct: 150 VEFYSHGSAEKALQNFTGHVMPNTDRPFKLNWASYSMGEKRSEVASDYS------IFVGD 203
Query: 138 LVETVDEEELKSHFI-KFGNIIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAIIEMNGRM 195
L V +E L F K+ ++ K++ D N G+S+G+GF++F A+ EMNG
Sbjct: 204 LAADVTDEMLMELFANKYRSVKGAKVIIDANTGRSRGYGFVRFGDDNDKSHAMTEMNGAY 263
Query: 196 IQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNK-IFVANLPSNINNSEFEELFARFGT 254
+ A P N+ ++V L N++ E + FA++G
Sbjct: 264 CSTRPIRIGPATPRRSSGDSGSSTPGHSDGDSTNRTVYVGGLDPNVSEDELRKAFAKYGD 323
Query: 255 ITSSSLVSDKHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTL 298
+ S + K GF++F+ A A+ +NG V + ++++
Sbjct: 324 VASVKIPLGKQCGFVQFVSRTDAEEALQGLNGSVIGKQAVRLSW 367
>gi|125811664|ref|XP_001361971.1| GA18301 [Drosophila pseudoobscura pseudoobscura]
gi|195171077|ref|XP_002026337.1| GL20391 [Drosophila persimilis]
gi|54637147|gb|EAL26550.1| GA18301 [Drosophila pseudoobscura pseudoobscura]
gi|194111239|gb|EDW33282.1| GL20391 [Drosophila persimilis]
Length = 296
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 95/164 (57%), Gaps = 8/164 (4%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+++ NLE S+DN+A+ + F FG + + VA++++ SRG+ + F++ A+ A ++N
Sbjct: 104 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVN 163
Query: 97 GHLIGSKPV-IITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
G L ++ V ++ F+ + + +EK ++VKNL E E+ L+ F +G
Sbjct: 164 GMLCNNQKVHVVKFIPRRDRE-------QEKATHFKNLYVKNLSEEFTEQHLREMFEPYG 216
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHN 199
I K++ DE G+S+ FGF+ F + ++A A+I ++G+ + N
Sbjct: 217 RITSHKLMLDEEGRSRRFGFVAFENPQSALAAVIGLHGKQLGDN 260
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 78/160 (48%), Gaps = 13/160 (8%)
Query: 132 KVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEM 191
K+++KNL ++D + + F FGNI+ + +DE+G S+G+GF+ F S +AA AI ++
Sbjct: 103 KIYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKV 162
Query: 192 NGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFAR 251
NG + + V K P+ + ++V NL E+F
Sbjct: 163 NGMLCNNQKVHVV--------KFIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREMFEP 214
Query: 252 FGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNG 286
+G ITS L+ D + GF+ F P+ A AV ++G
Sbjct: 215 YGRITSHKLMLDEEGRSRRFGFVAFENPQSALAAVIGLHG 254
>gi|393909208|gb|EFO19127.2| hypothetical protein LOAG_09365 [Loa loa]
Length = 421
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 69/285 (24%), Positives = 125/285 (43%), Gaps = 31/285 (10%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
++V NL+PS+ + F + G + +V + ++ +A + F A +A MN
Sbjct: 76 VYVGNLDPSITEDFITTLFGQIGAVTKTKVIFDGTNDP--YAFVEFADHYTAAQALQAMN 133
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
++ K + + + +PG ++K K VFV +L VD + LK F FG
Sbjct: 134 KRVLLEKEMKVNWA-TEPGSQAKV-----DTSKHFHVFVGDLSPEVDNKALKDAFAPFGE 187
Query: 157 IIEVKIVRDENG-KSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVP----- 210
+ + K++RD KSKG+GF+ + + AE+AI +MNG+ + + + A P
Sbjct: 188 VSDAKVIRDATTLKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATRKPTGTGA 247
Query: 211 -----GK------KVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSS 259
G+ V+ + P ++V N+ S+ N+ + F +FG I
Sbjct: 248 GDGQYGRTELNYDDVYNQTGPD------NTSVYVGNVNSSANDEDLRAAFDKFGRILEVR 301
Query: 260 LVSDKHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKPG 304
+ + F+ F A +A+ MNG + +K + T G
Sbjct: 302 IFKSQGYAFVRFDKKDSACNAICKMNGQELCGQNIKCSWGRTPEG 346
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 47/214 (21%), Positives = 97/214 (45%), Gaps = 18/214 (8%)
Query: 121 VGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFS 180
G E+ Q + V+V NL ++ E+ + + F + G + + K++ D G + + F++F
Sbjct: 66 TGSEDHQPRT--VYVGNLDPSITEDFITTLFGQIGAVTKTKVIFD--GTNDPYAFVEFAD 121
Query: 181 YKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNI 240
+ A +A+ MN R++ V+ A PG + + ++ +FV +L +
Sbjct: 122 HYTAAQALQAMNKRVLLEKEMKVNWA-TEPGSQA-------KVDTSKHFHVFVGDLSPEV 173
Query: 241 NNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
+N ++ FA FG ++ + ++ D K GF+ + + A A+ MNG + +
Sbjct: 174 DNKALKDAFAPFGEVSDAKVIRDATTLKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTI 233
Query: 295 KVTLSGTKPGVSITNPTKAPKKPAYIDEVKNVIG 328
+ + KP + + + D+V N G
Sbjct: 234 RTNWATRKPTGTGAGDGQYGRTELNYDDVYNQTG 267
>gi|297602825|ref|NP_001052934.2| Os04g0449900 [Oryza sativa Japonica Group]
gi|255675510|dbj|BAF14848.2| Os04g0449900 [Oryza sativa Japonica Group]
Length = 387
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 64/283 (22%), Positives = 123/283 (43%), Gaps = 12/283 (4%)
Query: 22 ARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAII 80
A + N + + V +L+ +D L + F G + ++V RN+ +S G+ +
Sbjct: 52 APAGSGGNGCEENKTIWVGDLQYWMDENYLHSCFGPSGEVVTIKVIRNRQTGQSEGYGFV 111
Query: 81 VFNTPAEAKKARVEMNGHLI--GSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNL 138
F + A+KA GH++ +P + + G++ V + +FV +L
Sbjct: 112 EFYSHGSAEKALQNFTGHVMPNTDRPFKLNWASYSMGEKRSEVASDYS------IFVGDL 165
Query: 139 VETVDEEELKSHFI-KFGNIIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAIIEMNGRMI 196
V +E L F K+ ++ K++ D N G+S+G+GF++F A+ EMNG
Sbjct: 166 AADVTDEMLMELFANKYRSVKGAKVIIDANTGRSRGYGFVRFGDDNDKSHAMTEMNGAYC 225
Query: 197 QHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNK-IFVANLPSNINNSEFEELFARFGTI 255
+ A P N+ ++V L N++ E + FA++G +
Sbjct: 226 STRPIRIGPATPRRSSGDSGSSTPGHSDGDSTNRTVYVGGLDPNVSEDELRKAFAKYGDV 285
Query: 256 TSSSLVSDKHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTL 298
S + K GF++F+ A A+ +NG V + ++++
Sbjct: 286 ASVKIPLGKQCGFVQFVSRTDAEEALQGLNGSVIGKQAVRLSW 328
>gi|115451047|ref|NP_001049124.1| Os03g0174100 [Oryza sativa Japonica Group]
gi|113547595|dbj|BAF11038.1| Os03g0174100, partial [Oryza sativa Japonica Group]
Length = 438
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 124/285 (43%), Gaps = 29/285 (10%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L + +L+ D L N F G L+ V++ RNK G+ I F + A+K
Sbjct: 40 LWIGDLQYWADENYLYNCFAHTGELQSVKIIRNKLTSLPEGYGFIEFISHEVAEKVLQTY 99
Query: 96 NG-HLIGSKPVI-ITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHF-I 152
NG + G++ + + G+R GP+ +FV +L V + L+ F +
Sbjct: 100 NGTQMPGTEHTFRLNWASFSSGERRPDAGPDHS------IFVGDLAPDVTDYLLQETFRV 153
Query: 153 KFGNIIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLA----- 206
+ ++ K+V D N G+SKG+GF++F +A+ EMNG +S A
Sbjct: 154 SYPSVKGAKVVTDPNTGRSKGYGFVKFADENEKNRAMTEMNGMYCSTRPMRISAAIPKKT 213
Query: 207 -----EIVPGKKVFPKV--KPPLLQPARKNK------IFVANLPSNINNSEFEELFARFG 253
+ K ++P P +QP + IF+ NL N+ E ++ +FG
Sbjct: 214 TGSQLQYGAAKAMYPAAGYAVPQVQPVLPDSDPTNTTIFIGNLDQNVTEDELRQICVQFG 273
Query: 254 TITSSSLVSDKHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTL 298
+ + ++K GF+++ A AV ++G + ++++
Sbjct: 274 ELIYVKIPANKACGFVQYASRASAEEAVQRLHGTTIGQQVVRLSW 318
>gi|108706453|gb|ABF94248.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|215694482|dbj|BAG89475.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 416
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 124/285 (43%), Gaps = 29/285 (10%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L + +L+ D L N F G L+ V++ RNK G+ I F + A+K
Sbjct: 18 LWIGDLQYWADENYLYNCFAHTGELQSVKIIRNKLTSLPEGYGFIEFISHEVAEKVLQTY 77
Query: 96 NG-HLIGSKPVI-ITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHF-I 152
NG + G++ + + G+R GP+ +FV +L V + L+ F +
Sbjct: 78 NGTQMPGTEHTFRLNWASFSSGERRPDAGPDHS------IFVGDLAPDVTDYLLQETFRV 131
Query: 153 KFGNIIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLA----- 206
+ ++ K+V D N G+SKG+GF++F +A+ EMNG +S A
Sbjct: 132 SYPSVKGAKVVTDPNTGRSKGYGFVKFADENEKNRAMTEMNGMYCSTRPMRISAAIPKKT 191
Query: 207 -----EIVPGKKVFPKV--KPPLLQPARKNK------IFVANLPSNINNSEFEELFARFG 253
+ K ++P P +QP + IF+ NL N+ E ++ +FG
Sbjct: 192 TGSQLQYGAAKAMYPAAGYAVPQVQPVLPDSDPTNTTIFIGNLDQNVTEDELRQICVQFG 251
Query: 254 TITSSSLVSDKHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTL 298
+ + ++K GF+++ A AV ++G + ++++
Sbjct: 252 ELIYVKIPANKACGFVQYASRASAEEAVQRLHGTTIGQQVVRLSW 296
>gi|218192181|gb|EEC74608.1| hypothetical protein OsI_10216 [Oryza sativa Indica Group]
Length = 416
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 124/285 (43%), Gaps = 29/285 (10%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L + +L+ D L N F G L+ V++ RNK G+ I F + A+K
Sbjct: 18 LWIGDLQYWADENYLYNCFAHTGELQSVKIIRNKLTSLPEGYGFIEFISHEVAEKVLQTY 77
Query: 96 NG-HLIGSKPVI-ITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHF-I 152
NG + G++ + + G+R GP+ +FV +L V + L+ F +
Sbjct: 78 NGTQMPGTEHTFRLNWASFSSGERRPDAGPDHS------IFVGDLAPDVTDYLLQETFRV 131
Query: 153 KFGNIIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLA----- 206
+ ++ K+V D N G+SKG+GF++F +A+ EMNG +S A
Sbjct: 132 SYPSVKGAKVVTDPNTGRSKGYGFVKFADENEKNRAMTEMNGMYCSTRPMRISAAIPKKT 191
Query: 207 -----EIVPGKKVFPKV--KPPLLQPARKNK------IFVANLPSNINNSEFEELFARFG 253
+ K ++P P +QP + IF+ NL N+ E ++ +FG
Sbjct: 192 TGSQLQYGAAKAMYPAAGYAVPQVQPVLPDSDPTNTTIFIGNLDQNVTEDELRQICVQFG 251
Query: 254 TITSSSLVSDKHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTL 298
+ + ++K GF+++ A AV ++G + ++++
Sbjct: 252 ELIYVKIPANKACGFVQYASRASAEEAVQRLHGTTIGQQVVRLSW 296
>gi|50725189|dbj|BAD33940.1| putative nucleic acid binding protein [Oryza sativa Japonica Group]
gi|51535291|dbj|BAD38554.1| putative nucleic acid binding protein [Oryza sativa Japonica Group]
Length = 316
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 65/264 (24%), Positives = 121/264 (45%), Gaps = 21/264 (7%)
Query: 46 VDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLI--GS 102
+D L + F G + ++V RNK +S G+ + F + A A+K GH++
Sbjct: 1 MDENYLHSCFGYTGEVVAIKVIRNKQTGQSEGYGFVEFYSHAAAEKVLEGFAGHIMPNTD 60
Query: 103 KPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIK-FGNIIEVK 161
+P I + G R + + +FV +L V++ L F K + ++ K
Sbjct: 61 QPFRINWASFSMGDRRSDIASDHS------IFVGDLASDVNDTTLLETFSKRYSSVKGAK 114
Query: 162 IVRDEN-GKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKP 220
+V D N G+SKG+GF++F A+ EMNG + ++ + + P K
Sbjct: 115 VVIDANTGRSKGYGFVRFGDDNEKTHAMTEMNG--VYCSTRPMRIGPATPRKT--SGTSG 170
Query: 221 PLLQPARKN------KIFVANLPSNINNSEFEELFARFGTITSSSLVSDKHIGFIEFIMP 274
P AR + +FV L N++ + + F+++G I+S + K GF++F+
Sbjct: 171 PTGSAARSDGDLTNTTVFVGGLDPNVSEDDLRQTFSQYGEISSVKIPVGKQCGFVQFVQR 230
Query: 275 KHATHAVSTMNGHVFKSKPLKVTL 298
K+A A+ +NG + ++++
Sbjct: 231 KNAEDALQGLNGSTIGKQTVRLSW 254
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 94/185 (50%), Gaps = 18/185 (9%)
Query: 142 VDEEELKSHFIKFGNIIEVKIVRD-ENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNS 200
+DE L S F G ++ +K++R+ + G+S+G+GF++F+S+ AAEK + G ++ +
Sbjct: 1 MDENYLHSCFGYTGEVVAIKVIRNKQTGQSEGYGFVEFYSHAAAEKVLEGFAGHIMPNTD 60
Query: 201 T--FVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFA-RFGTITS 257
++ A G + A + IFV +L S++N++ E F+ R+ ++
Sbjct: 61 QPFRINWASFSMGDR--------RSDIASDHSIFVGDLASDVNDTTLLETFSKRYSSVKG 112
Query: 258 SSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKPGVSITNPT 311
+ +V D K GF+ F THA++ MNG ++P+++ + + + PT
Sbjct: 113 AKVVIDANTGRSKGYGFVRFGDDNEKTHAMTEMNGVYCSTRPMRIGPATPRKTSGTSGPT 172
Query: 312 KAPKK 316
+ +
Sbjct: 173 GSAAR 177
>gi|50294199|ref|XP_449511.1| hypothetical protein [Candida glabrata CBS 138]
gi|49528825|emb|CAG62487.1| unnamed protein product [Candida glabrata]
Length = 513
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 65/226 (28%), Positives = 107/226 (47%), Gaps = 30/226 (13%)
Query: 84 TPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKD------KVFVKN 137
T A+ E NG + S+P + + QR +Q K D K+F+
Sbjct: 78 TTADGNAVSSEQNGSNVSSEPQVSNQTQNSE-QRESIEEANRRQVKADLSRENCKMFIGG 136
Query: 138 LVETVDEEELKSHFIKFGNIIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAIIEMNGRMI 196
L E+ L+ +F K+GN++E+KI++D N G+S+GFGF+ F + + ++ +
Sbjct: 137 LNWETTEDGLREYFSKYGNVVELKIMKDPNTGRSRGFGFLSFDAPSSVDEVV------KT 190
Query: 197 QHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTIT 256
QH I+ GK + PK P + + KIFV L +++ EFEE F+++GTI
Sbjct: 191 QH---------ILDGKVIDPKRAIPREEQDKTGKIFVGGLGTDVRPKEFEEYFSQWGTII 241
Query: 257 SSSLVSDKHI------GFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
+ L+ DK GF+ + P A V FK K +++
Sbjct: 242 DAQLMLDKDTGRSRGFGFVTYDSPD-AAEKVCESRYREFKGKQIEI 286
>gi|297792959|ref|XP_002864364.1| hypothetical protein ARALYDRAFT_495572 [Arabidopsis lyrata subsp.
lyrata]
gi|297310199|gb|EFH40623.1| hypothetical protein ARALYDRAFT_495572 [Arabidopsis lyrata subsp.
lyrata]
Length = 398
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 68/279 (24%), Positives = 127/279 (45%), Gaps = 26/279 (9%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L + +L+ +D +++ F + G + +V RNK +S G+ I F + A++
Sbjct: 66 LWIGDLQQWMDENYIMSVFNQSGEAQSAKVIRNKLTGQSEGYGFIEFINHSVAERVLQTY 125
Query: 96 NGHLIGS--KPVIITFVELKPGQ-RSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFI 152
NG + S + + + + G+ R + GP+ +FV +L V + L F
Sbjct: 126 NGAQMPSTEQTFRLNWAQAGAGEKRHQTEGPDHT------IFVGDLAPEVTDYMLSDTFK 179
Query: 153 K-FGNIIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVP 210
+G++ K+V D G+SKG+GF++F +A+ EMNG Q+ ST
Sbjct: 180 NVYGSVKGAKVVVDRTTGRSKGYGFVRFADENEQMRAMTEMNG---QYCSTRPMRIGPAA 236
Query: 211 GKKVFPKVKPPLLQPARKNK----------IFVANLPSNINNSEFEELFARFGTITSSSL 260
K P ++P + Q + IFV L +N+ + E + +F +FG + +
Sbjct: 237 NKNALP-MQPAMYQNTQGGNAGDSDPNNTTIFVGGLDANVTDDELKSIFGQFGELLHVKI 295
Query: 261 VSDKHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299
K GF+++ A HA+S +NG + ++++
Sbjct: 296 PPGKRCGFVQYANRATAEHALSVLNGTQLGGQSIRLSWG 334
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 95/198 (47%), Gaps = 17/198 (8%)
Query: 115 GQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGF 173
GQ+ VG + + +++ +L + +DE + S F + G K++R++ G+S+G+
Sbjct: 48 GQQQYGVGSQNPGSEVKSLWIGDLQQWMDENYIMSVFNQSGEAQSAKVIRNKLTGQSEGY 107
Query: 174 GFIQFFSYKAAEKAIIEMNG-RMIQHNSTF-VSLAEIVPGKKVFPKVKPPLLQPARKNKI 231
GFI+F ++ AE+ + NG +M TF ++ A+ G+K P + I
Sbjct: 108 GFIEFINHSVAERVLQTYNGAQMPSTEQTFRLNWAQAGAGEKRHQTEGP-------DHTI 160
Query: 232 FVANLPSNINNSEFEELFAR-FGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTM 284
FV +L + + + F +G++ + +V D K GF+ F A++ M
Sbjct: 161 FVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVVDRTTGRSKGYGFVRFADENEQMRAMTEM 220
Query: 285 NGHVFKSKPLKVTLSGTK 302
NG ++P+++ + K
Sbjct: 221 NGQYCSTRPMRIGPAANK 238
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 86/183 (46%), Gaps = 15/183 (8%)
Query: 34 ENELHVNNLEPSVDNQALINEFKK-FGTLRDVRVARNKN-DESRGFAIIVFNTPAEAKKA 91
++ + V +L P V + L + FK +G+++ +V ++ S+G+ + F E +A
Sbjct: 157 DHTIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVVDRTTGRSKGYGFVRFADENEQMRA 216
Query: 92 RVEMNGHLIGSKPVII------TFVELKPG--QRSKPVGPEEKQYKKDKVFVKNLVETVD 143
EMNG ++P+ I + ++P Q ++ + +FV L V
Sbjct: 217 MTEMNGQYCSTRPMRIGPAANKNALPMQPAMYQNTQGGNAGDSDPNNTTIFVGGLDANVT 276
Query: 144 EEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFV 203
++ELKS F +FG ++ VKI K GF+Q+ + AE A+ +NG + S +
Sbjct: 277 DDELKSIFGQFGELLHVKIP-----PGKRCGFVQYANRATAEHALSVLNGTQLGGQSIRL 331
Query: 204 SLA 206
S
Sbjct: 332 SWG 334
>gi|442625619|ref|NP_001259974.1| RNA-binding protein 9, isoform J [Drosophila melanogaster]
gi|440213243|gb|AGB92511.1| RNA-binding protein 9, isoform J [Drosophila melanogaster]
Length = 684
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 92/176 (52%), Gaps = 20/176 (11%)
Query: 130 KDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAI 188
K + V L +T+ ++E++S F+ FG + K++RD+ G+S G+GF+ + + AEKAI
Sbjct: 109 KTNLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKAI 168
Query: 189 IEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEEL 248
+NG +Q+ + VS+A P + + ++V+ LP N+ S+ E L
Sbjct: 169 NALNGLRLQNKTIKVSIAR-------------PSSESIKGANLYVSGLPKNMTQSDLESL 215
Query: 249 FARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTL 298
F+ +G I +S ++ D K +GFI F A A+ +NG K+ +T+
Sbjct: 216 FSPYGKIITSRILCDNITGLSKGVGFIRFDQRFEADRAIKELNGTTPKNSTEPITV 271
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 78/159 (49%), Gaps = 13/159 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L VN L ++ + + F FG + ++ R+K +S G+ + + +A+KA +
Sbjct: 112 LIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKAINAL 171
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
NG + +K + ++ P + K ++V L + + + +L+S F +G
Sbjct: 172 NGLRLQNKTIKVSIAR-----------PSSESIKGANLYVSGLPKNMTQSDLESLFSPYG 220
Query: 156 NIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEMNG 193
II +I+ D G SKG GFI+F A++AI E+NG
Sbjct: 221 KIITSRILCDNITGLSKGVGFIRFDQRFEADRAIKELNG 259
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRD-ENGKSKGFGFIQFFSYKAAEKAIIEM 191
+FV NL +E L F FG + VK++RD ++ K KGFGF+ +Y+ A AI +
Sbjct: 358 IFVYNLAPDTEENVLWQLFGPFGAVQSVKVIRDLQSNKCKGFGFVTMTNYEEAVLAIQSL 417
Query: 192 NGRMI 196
NG +
Sbjct: 418 NGYTL 422
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
Query: 224 QPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDK------HIGFIEFIMPKHA 277
+P K + V LP ++ E LF FG + S L+ DK GF+ ++ + A
Sbjct: 105 EPDPKTNLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDA 164
Query: 278 THAVSTMNGHVFKSKPLKVTLS 299
A++ +NG ++K +KV+++
Sbjct: 165 EKAINALNGLRLQNKTIKVSIA 186
Score = 39.7 bits (91), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKKARVEM 95
+ V NL P + L F FG ++ V+V R+ ++++ +GF + EA A +
Sbjct: 358 IFVYNLAPDTEENVLWQLFGPFGAVQSVKVIRDLQSNKCKGFGFVTMTNYEEAVLAIQSL 417
Query: 96 NGHLIGSKPVIITF 109
NG+ +G++ + ++F
Sbjct: 418 NGYTLGNRVLQVSF 431
>gi|195051457|ref|XP_001993098.1| GH13638 [Drosophila grimshawi]
gi|193900157|gb|EDV99023.1| GH13638 [Drosophila grimshawi]
Length = 726
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 92/176 (52%), Gaps = 20/176 (11%)
Query: 130 KDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAI 188
K + V L +T+ ++E++S F+ FG + K++RD+ G+S G+GF+ + + AEKAI
Sbjct: 112 KTNLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKAI 171
Query: 189 IEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEEL 248
+NG +Q+ + VS+A P + + ++V+ LP N+ S+ E L
Sbjct: 172 NALNGLRLQNKTIKVSIAR-------------PSSESIKGANLYVSGLPKNMTQSDLESL 218
Query: 249 FARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTL 298
F+ FG I +S ++ D K +GFI F A A+ +NG K+ +T+
Sbjct: 219 FSPFGKIITSRILCDNITGLSKGVGFIRFDQRFEADRAIKELNGTTPKNSTEPITV 274
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 78/159 (49%), Gaps = 13/159 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L VN L ++ + + F FG + ++ R+K +S G+ + + +A+KA +
Sbjct: 115 LIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKAINAL 174
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
NG + +K + ++ P + K ++V L + + + +L+S F FG
Sbjct: 175 NGLRLQNKTIKVSIAR-----------PSSESIKGANLYVSGLPKNMTQSDLESLFSPFG 223
Query: 156 NIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEMNG 193
II +I+ D G SKG GFI+F A++AI E+NG
Sbjct: 224 KIITSRILCDNITGLSKGVGFIRFDQRFEADRAIKELNG 262
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRD-ENGKSKGFGFIQFFSYKAAEKAIIEM 191
+FV NL +E L F FG + VK++RD ++ K KGFGF+ +Y+ A AI +
Sbjct: 361 IFVYNLAPETEENVLWQLFGPFGAVQSVKVIRDLQSNKCKGFGFVTMTNYEEAVLAIQSL 420
Query: 192 NGRMI 196
NG +
Sbjct: 421 NGYTL 425
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
Query: 224 QPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDK------HIGFIEFIMPKHA 277
+P K + V LP ++ E LF FG + S L+ DK GF+ ++ + A
Sbjct: 108 EPDPKTNLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDA 167
Query: 278 THAVSTMNGHVFKSKPLKVTLS 299
A++ +NG ++K +KV+++
Sbjct: 168 EKAINALNGLRLQNKTIKVSIA 189
>gi|218202287|gb|EEC84714.1| hypothetical protein OsI_31675 [Oryza sativa Indica Group]
Length = 377
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/269 (24%), Positives = 121/269 (44%), Gaps = 24/269 (8%)
Query: 44 PSVDNQALINEFKKFGTLRDV---RVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHL 99
PS + + FG + V +V RNK +S G+ + F + A A+K GH+
Sbjct: 57 PSCTGDGKCSFVRMFGLMCQVVAIKVIRNKQTGQSEGYGFVEFYSHAAAEKVLEGFAGHI 116
Query: 100 I--GSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIK-FGN 156
+ +P I + G R + + +FV +L V++ L F K + +
Sbjct: 117 MPNTDQPFRINWASFSMGDRRSDIASDHS------IFVGDLASDVNDTTLLETFSKRYSS 170
Query: 157 IIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
+ K+V D N G+SKG+GF++F A+ EMNG + ++ + + P K
Sbjct: 171 VKGAKVVIDANTGRSKGYGFVRFGDDNEKTHAMTEMNG--VYCSTRPMRIGPATPRKT-- 226
Query: 216 PKVKPPLLQPARKN------KIFVANLPSNINNSEFEELFARFGTITSSSLVSDKHIGFI 269
P AR + +FV L N++ + + F+++G I+S + K GF+
Sbjct: 227 SGTSGPTGSAARSDGDLTNTTVFVGGLDPNVSEDDLRQTFSQYGEISSVKIPVGKQCGFV 286
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKVTL 298
+F+ K+A A+ +NG + ++++
Sbjct: 287 QFVQRKNAEDALQGLNGSTIGKQTVRLSW 315
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 93/183 (50%), Gaps = 22/183 (12%)
Query: 148 KSHFIK-FG---NIIEVKIVRD-ENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNST- 201
K F++ FG ++ +K++R+ + G+S+G+GF++F+S+ AAEK + G ++ +
Sbjct: 64 KCSFVRMFGLMCQVVAIKVIRNKQTGQSEGYGFVEFYSHAAAEKVLEGFAGHIMPNTDQP 123
Query: 202 -FVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFA-RFGTITSSS 259
++ A G + A + IFV +L S++N++ E F+ R+ ++ +
Sbjct: 124 FRINWASFSMGDR--------RSDIASDHSIFVGDLASDVNDTTLLETFSKRYSSVKGAK 175
Query: 260 LVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKPGVSITNPTKA 313
+V D K GF+ F THA++ MNG ++P+++ + + + PT +
Sbjct: 176 VVIDANTGRSKGYGFVRFGDDNEKTHAMTEMNGVYCSTRPMRIGPATPRKTSGTSGPTGS 235
Query: 314 PKK 316
+
Sbjct: 236 AAR 238
>gi|124248380|gb|ABM92810.1| IP15810p [Drosophila melanogaster]
Length = 647
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 92/181 (50%), Gaps = 25/181 (13%)
Query: 130 KDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAI 188
K + V L +T+ ++E++S F+ FG + K++RD+ G+S G+GF+ + + AEKAI
Sbjct: 312 KTNLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKAI 371
Query: 189 IEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEEL 248
+NG +Q+ + VS+A P + + ++V+ LP N+ S+ E L
Sbjct: 372 NALNGLRLQNKTIKVSIAR-------------PSSESIKGANLYVSGLPKNMTQSDLESL 418
Query: 249 FARFGTITSSSLVSD-----------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVT 297
F+ +G I +S ++ D K +GFI F A A+ +NG K+ +T
Sbjct: 419 FSPYGKIITSRILCDNITDEHAAGLSKGVGFIRFDQRFEADRAIKELNGTTPKNSTEPIT 478
Query: 298 L 298
+
Sbjct: 479 V 479
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 78/164 (47%), Gaps = 18/164 (10%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L VN L ++ + + F FG + ++ R+K +S G+ + + +A+KA +
Sbjct: 315 LIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKAINAL 374
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
NG + +K + ++ P + K ++V L + + + +L+S F +G
Sbjct: 375 NGLRLQNKTIKVSIAR-----------PSSESIKGANLYVSGLPKNMTQSDLESLFSPYG 423
Query: 156 NIIEVKIVRDE------NGKSKGFGFIQFFSYKAAEKAIIEMNG 193
II +I+ D G SKG GFI+F A++AI E+NG
Sbjct: 424 KIITSRILCDNITDEHAAGLSKGVGFIRFDQRFEADRAIKELNG 467
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRD-ENGKSKGFGFIQFFSYKAAEKAIIEM 191
+FV NL +E L F FG + VK++RD ++ K KGFGF+ +Y+ A AI +
Sbjct: 566 IFVYNLAPDTEENVLWQLFGPFGAVQSVKVIRDLQSNKCKGFGFVTMTNYEEAVLAIQSL 625
Query: 192 NGRMI 196
NG +
Sbjct: 626 NGYTL 630
Score = 45.4 bits (106), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
Query: 224 QPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDK------HIGFIEFIMPKHA 277
+P K + V LP ++ E LF FG + S L+ DK GF+ ++ + A
Sbjct: 308 EPDPKTNLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDA 367
Query: 278 THAVSTMNGHVFKSKPLKVTLS 299
A++ +NG ++K +KV+++
Sbjct: 368 EKAINALNGLRLQNKTIKVSIA 389
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKKARVEM 95
+ V NL P + L F FG ++ V+V R+ ++++ +GF + EA A +
Sbjct: 566 IFVYNLAPDTEENVLWQLFGPFGAVQSVKVIRDLQSNKCKGFGFVTMTNYEEAVLAIQSL 625
Query: 96 NGHLIGSKPVIITF 109
NG+ +G++ + ++F
Sbjct: 626 NGYTLGNRVLQVSF 639
>gi|399218847|emb|CCF75734.1| unnamed protein product [Babesia microti strain RI]
Length = 237
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 99/203 (48%), Gaps = 22/203 (10%)
Query: 41 NLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHL 99
NL+P VD + L F + G +R+V + R+K ++ +G+ + F+ EA A+ MN
Sbjct: 31 NLDPQVDEEILWELFTQVGIVRNVHIPRDKVTNQHQGYGFVEFDNETEADYAQKVMNALK 90
Query: 100 IGSKPVIITFVELKPGQRSKPVGPEEKQYK-KDKVFVKNLVETVDEEELKSHFIKFGNII 158
+ KP+ R +++ Y+ +F+ NL VDE+ L F FG ++
Sbjct: 91 VYHKPI-----------RCNKASQDKRTYEIGANLFIGNLDPDVDEKLLYDTFSAFGLVL 139
Query: 159 EVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPK 217
KIVR+E G KGFGF+ F S+ +++ A+ MNG+ + + VS A + K
Sbjct: 140 STKIVREEETGLGKGFGFVSFDSFDSSDAALASMNGQYLCNRPIQVSYA--------YKK 191
Query: 218 VKPPLLQPARKNKIFVANLPSNI 240
+ ++ AN PS+I
Sbjct: 192 DTTGERHGSAAERLLAANRPSDI 214
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 79/178 (44%), Gaps = 35/178 (19%)
Query: 137 NLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEMNGRM 195
NL VDEE L F + G + V I RD+ + +G+GF++F + A+ A MN
Sbjct: 31 NLDPQVDEEILWELFTQVGIVRNVHIPRDKVTNQHQGYGFVEFDNETEADYAQKVMNALK 90
Query: 196 IQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNK--------IFVANLPSNINNSEFEE 247
+ H KP A ++K +F+ NL +++ +
Sbjct: 91 VYH--------------------KPIRCNKASQDKRTYEIGANLFIGNLDPDVDEKLLYD 130
Query: 248 LFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299
F+ FG + S+ +V + K GF+ F + A+++MNG ++P++V+ +
Sbjct: 131 TFSAFGLVLSTKIVREEETGLGKGFGFVSFDSFDSSDAALASMNGQYLCNRPIQVSYA 188
>gi|195342135|ref|XP_002037657.1| GM18380 [Drosophila sechellia]
gi|194132507|gb|EDW54075.1| GM18380 [Drosophila sechellia]
Length = 650
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 92/181 (50%), Gaps = 25/181 (13%)
Query: 130 KDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAI 188
K + V L +T+ ++E++S F+ FG + K++RD+ G+S G+GF+ + + AEKAI
Sbjct: 315 KTNLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKAI 374
Query: 189 IEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEEL 248
+NG +Q+ + VS+A P + + ++V+ LP N+ S+ E L
Sbjct: 375 NALNGLRLQNKTIKVSIAR-------------PSSESIKGANLYVSGLPKNMTQSDLESL 421
Query: 249 FARFGTITSSSLVSD-----------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVT 297
F+ +G I +S ++ D K +GFI F A A+ +NG K+ +T
Sbjct: 422 FSPYGKIITSRILCDNITDEHAAGLSKGVGFIRFDQRFEADRAIKELNGTTPKNSTEPIT 481
Query: 298 L 298
+
Sbjct: 482 V 482
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 78/164 (47%), Gaps = 18/164 (10%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L VN L ++ + + F FG + ++ R+K +S G+ + + +A+KA +
Sbjct: 318 LIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKAINAL 377
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
NG + +K + ++ P + K ++V L + + + +L+S F +G
Sbjct: 378 NGLRLQNKTIKVSIAR-----------PSSESIKGANLYVSGLPKNMTQSDLESLFSPYG 426
Query: 156 NIIEVKIVRDE------NGKSKGFGFIQFFSYKAAEKAIIEMNG 193
II +I+ D G SKG GFI+F A++AI E+NG
Sbjct: 427 KIITSRILCDNITDEHAAGLSKGVGFIRFDQRFEADRAIKELNG 470
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRD-ENGKSKGFGFIQFFSYKAAEKAIIEM 191
+FV NL +E L F FG + VK++RD ++ K KGFGF+ +Y+ A AI +
Sbjct: 569 IFVYNLAPETEENVLWQLFGPFGAVQSVKVIRDLQSNKCKGFGFVTMTNYEEAVLAIQSL 628
Query: 192 NGRMI 196
NG +
Sbjct: 629 NGYTL 633
Score = 45.1 bits (105), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
Query: 224 QPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDK------HIGFIEFIMPKHA 277
+P K + V LP ++ E LF FG + S L+ DK GF+ ++ + A
Sbjct: 311 EPDPKTNLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDA 370
Query: 278 THAVSTMNGHVFKSKPLKVTLS 299
A++ +NG ++K +KV+++
Sbjct: 371 EKAINALNGLRLQNKTIKVSIA 392
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKKARVEM 95
+ V NL P + L F FG ++ V+V R+ ++++ +GF + EA A +
Sbjct: 569 IFVYNLAPETEENVLWQLFGPFGAVQSVKVIRDLQSNKCKGFGFVTMTNYEEAVLAIQSL 628
Query: 96 NGHLIGSKPVIITF 109
NG+ +G++ + ++F
Sbjct: 629 NGYTLGNRVLQVSF 642
>gi|194757405|ref|XP_001960955.1| GF11244 [Drosophila ananassae]
gi|190622253|gb|EDV37777.1| GF11244 [Drosophila ananassae]
Length = 307
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 95/164 (57%), Gaps = 8/164 (4%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+++ NLE S+DN+A+ + F FG + + VA++++ SRG+ + F+T A+ A ++N
Sbjct: 115 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDTEEAARAAIEKVN 174
Query: 97 GHLIGSKPV-IITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
G L ++ V ++ F+ + + +EK ++VKNL E E+ L+ F +G
Sbjct: 175 GMLCNNQKVHVVKFIPRRDRE-------QEKATHFKNLYVKNLGEEFTEQHLREMFEPYG 227
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHN 199
I K++ D+ G+S+ FGF+ + + ++A A+I ++G+ + N
Sbjct: 228 RITSHKLMLDDEGRSRRFGFVAYENPQSALAAVIGLHGKQLGDN 271
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 78/160 (48%), Gaps = 13/160 (8%)
Query: 132 KVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEM 191
K+++KNL ++D + + F FGNI+ + +DE+G S+G+GF+ F + +AA AI ++
Sbjct: 114 KIYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDTEEAARAAIEKV 173
Query: 192 NGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFAR 251
NG + + V K P+ + ++V NL E+F
Sbjct: 174 NGMLCNNQKVHVV--------KFIPRRDREQEKATHFKNLYVKNLGEEFTEQHLREMFEP 225
Query: 252 FGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNG 286
+G ITS L+ D + GF+ + P+ A AV ++G
Sbjct: 226 YGRITSHKLMLDDEGRSRRFGFVAYENPQSALAAVIGLHG 265
>gi|170055835|ref|XP_001863758.1| nucleolysin tia-1 [Culex quinquefasciatus]
gi|167875726|gb|EDS39109.1| nucleolysin tia-1 [Culex quinquefasciatus]
Length = 456
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 70/273 (25%), Positives = 118/273 (43%), Gaps = 21/273 (7%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L+V NL+ SV L F + G ++ ++ R + + +A I + + A+ A MN
Sbjct: 10 LYVGNLDQSVTEDLLCALFGQMGAVKSCKIIREASSDP--YAFIEYASHQSAQTALAAMN 67
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
L K + + + PG + P+ + +FV +L ++ E L+ F FG
Sbjct: 68 KRLFLKKEIKVNWA-TSPGNQ-----PKTDTSQHHHIFVGDLSPEIETETLREAFAPFGE 121
Query: 157 IIEVKIVRD-ENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVP----- 210
I +IVRD + KSKG+ F+ F AE AI MNG+ + S + + P
Sbjct: 122 ISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAIQMMNGQWLGSRSIRTNWSTRKPPAPRE 181
Query: 211 GKKVFPKVKPPLLQPARKNK------IFVANLPSN-INNSEFEELFARFGTITSSSLVSD 263
K K P + N ++ P N I+++ + F +FG+I + D
Sbjct: 182 NTKGIKSGKTPGFEEIYNNTGPTNTTVYCGGFPPNTISDNLIKTHFGQFGSIHDVRVFKD 241
Query: 264 KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
K FI+FI + A A+ + + P+K
Sbjct: 242 KGYAFIKFISKEAAARAIEGTHNSEVQGHPVKC 274
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 97/204 (47%), Gaps = 19/204 (9%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMN 192
++V NL ++V E+ L + F + G + KI+R+ + S + FI++ S+++A+ A+ MN
Sbjct: 10 LYVGNLDQSVTEDLLCALFGQMGAVKSCKIIREAS--SDPYAFIEYASHQSAQTALAAMN 67
Query: 193 GRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARF 252
R+ V+ A PG + P ++ + IFV +L I E FA F
Sbjct: 68 KRLFLKKEIKVNWA-TSPGNQ-------PKTDTSQHHHIFVGDLSPEIETETLREAFAPF 119
Query: 253 GTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKPGVS 306
G I++ +V D K F+ F+ A +A+ MNG S+ ++ S KP
Sbjct: 120 GEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAIQMMNGQWLGSRSIRTNWSTRKPPAP 179
Query: 307 ITNP--TKAPKKPAYIDEVKNVIG 328
N K+ K P + +E+ N G
Sbjct: 180 RENTKGIKSGKTPGF-EEIYNNTG 202
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 88/179 (49%), Gaps = 20/179 (11%)
Query: 25 NKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFN 83
N+ + + + V +L P ++ + L F FG + + R+ R+ + +S+G+A + F
Sbjct: 86 NQPKTDTSQHHHIFVGDLSPEIETETLREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFV 145
Query: 84 TPAEAKKARVEMNGHLIGSKPVIITFVELKP--------GQRSKPVGPEEKQY-----KK 130
AEA+ A MNG +GS+ + + KP G +S E+ Y
Sbjct: 146 KKAEAENAIQMMNGQWLGSRSIRTNWSTRKPPAPRENTKGIKSGKTPGFEEIYNNTGPTN 205
Query: 131 DKVFVKNL-VETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAI 188
V+ T+ + +K+HF +FG+I +V++ +D KG+ FI+F S +AA +AI
Sbjct: 206 TTVYCGGFPPNTISDNLIKTHFGQFGSIHDVRVFKD-----KGYAFIKFISKEAAARAI 259
>gi|194886456|ref|XP_001976617.1| GG19920 [Drosophila erecta]
gi|190659804|gb|EDV57017.1| GG19920 [Drosophila erecta]
Length = 307
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 95/164 (57%), Gaps = 8/164 (4%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+++ NLE S+DN+A+ + F FG + + VA++++ SRG+ + F++ A+ A ++N
Sbjct: 115 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVN 174
Query: 97 GHLIGSKPV-IITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
G L ++ V ++ F+ + + +EK ++VKNL E E+ L+ F +G
Sbjct: 175 GMLCNNQKVHVVKFIPRRDRE-------QEKATHFKNLYVKNLSEEFTEQHLREMFEPYG 227
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHN 199
I K++ DE G+S+ FGF+ + + ++A A+I ++G+ + N
Sbjct: 228 RITSHKLMLDEEGRSRRFGFVAYENPQSALAAVIGLHGKQLGDN 271
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 78/160 (48%), Gaps = 13/160 (8%)
Query: 132 KVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEM 191
K+++KNL ++D + + F FGNI+ + +DE+G S+G+GF+ F S +AA AI ++
Sbjct: 114 KIYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKV 173
Query: 192 NGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFAR 251
NG + + V K P+ + ++V NL E+F
Sbjct: 174 NGMLCNNQKVHVV--------KFIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREMFEP 225
Query: 252 FGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNG 286
+G ITS L+ D + GF+ + P+ A AV ++G
Sbjct: 226 YGRITSHKLMLDEEGRSRRFGFVAYENPQSALAAVIGLHG 265
>gi|18423684|ref|NP_568815.1| RNA-binding protein 45A [Arabidopsis thaliana]
gi|75334165|sp|Q9FPJ8.1|RB45A_ARATH RecName: Full=Polyadenylate-binding protein RBP45A;
Short=Poly(A)-binding protein RBP45A; AltName:
Full=RNA-binding protein 45A; Short=AtRBP45A
gi|11762114|gb|AAG40335.1|AF324983_1 AT5g54900 [Arabidopsis thaliana]
gi|119360145|gb|ABL66801.1| At5g54900 [Arabidopsis thaliana]
gi|332009171|gb|AED96554.1| RNA-binding protein 45A [Arabidopsis thaliana]
Length = 387
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/279 (24%), Positives = 127/279 (45%), Gaps = 26/279 (9%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L + +L+ +D +++ F + G +V RNK +S G+ I F + + A++
Sbjct: 62 LWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVSHSVAERVLQTY 121
Query: 96 NGHLIGS--KPVIITFVELKPGQ-RSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFI 152
NG + S + + + + G+ R + GP+ +FV +L V + L F
Sbjct: 122 NGAPMPSTEQTFRLNWAQAGAGEKRFQTEGPDHT------IFVGDLAPEVTDYMLSDTFK 175
Query: 153 K-FGNIIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVP 210
+G++ K+V D G+SKG+GF++F +A+ EMNG Q+ ST
Sbjct: 176 NVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNG---QYCSTRPMRIGPAA 232
Query: 211 GKKVFPKVKPPLLQPAR----------KNKIFVANLPSNINNSEFEELFARFGTITSSSL 260
K P ++P + Q + IFV L +N+ + E + +F +FG + +
Sbjct: 233 NKNALP-MQPAMYQNTQGANAGDNDPNNTTIFVGGLDANVTDDELKSIFGQFGELLHVKI 291
Query: 261 VSDKHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299
K GF+++ A HA+S +NG + ++++
Sbjct: 292 PPGKRCGFVQYANKASAEHALSVLNGTQLGGQSIRLSWG 330
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 94/200 (47%), Gaps = 19/200 (9%)
Query: 115 GQRSKPVGPEEKQYKKD--KVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSK 171
GQ +G + D +++ +L + +DE + S F + G K++R++ G+S+
Sbjct: 42 GQHQYGIGSQNPGSASDVKSLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSE 101
Query: 172 GFGFIQFFSYKAAEKAIIEMNGR-MIQHNSTF-VSLAEIVPGKKVFPKVKPPLLQPARKN 229
G+GFI+F S+ AE+ + NG M TF ++ A+ G+K F P +
Sbjct: 102 GYGFIEFVSHSVAERVLQTYNGAPMPSTEQTFRLNWAQAGAGEKRFQTEGP-------DH 154
Query: 230 KIFVANLPSNINNSEFEELFAR-FGTITSSSLVSD------KHIGFIEFIMPKHATHAVS 282
IFV +L + + + F +G++ + +V D K GF+ F A++
Sbjct: 155 TIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMT 214
Query: 283 TMNGHVFKSKPLKVTLSGTK 302
MNG ++P+++ + K
Sbjct: 215 EMNGQYCSTRPMRIGPAANK 234
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 87/183 (47%), Gaps = 15/183 (8%)
Query: 34 ENELHVNNLEPSVDNQALINEFKK-FGTLRDVRVARNKN-DESRGFAIIVFNTPAEAKKA 91
++ + V +L P V + L + FK +G+++ +V ++ S+G+ + F E +A
Sbjct: 153 DHTIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRA 212
Query: 92 RVEMNGHLIGSKPVII------TFVELKPG--QRSKPVGPEEKQYKKDKVFVKNLVETVD 143
EMNG ++P+ I + ++P Q ++ + +FV L V
Sbjct: 213 MTEMNGQYCSTRPMRIGPAANKNALPMQPAMYQNTQGANAGDNDPNNTTIFVGGLDANVT 272
Query: 144 EEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFV 203
++ELKS F +FG ++ VKI K GF+Q+ + +AE A+ +NG + S +
Sbjct: 273 DDELKSIFGQFGELLHVKIP-----PGKRCGFVQYANKASAEHALSVLNGTQLGGQSIRL 327
Query: 204 SLA 206
S
Sbjct: 328 SWG 330
>gi|392558318|gb|EIW51507.1| RNA-binding protein Prp24 [Trametes versicolor FP-101664 SS1]
Length = 1049
Score = 86.7 bits (213), Expect = 1e-14, Method: Composition-based stats.
Identities = 71/290 (24%), Positives = 128/290 (44%), Gaps = 32/290 (11%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L+V N D+ + F K+G + DVR K +R F + + +P A+ A +E+N
Sbjct: 713 LYVTNFPEDADDTFIRTLFGKYGEIFDVRWPSKKFKSTRRFCYVQYTSPTSAENA-LELN 771
Query: 97 GHLIGSKPVIITFVELKPGQRSKPV--GPEEKQYKKD------KVFVKNLVETVDEEELK 148
G +++ G+R PE ++ + D ++++ L + V +E+L+
Sbjct: 772 G------------TDMEEGRRLSVYISNPERRKERTDSDANEREIYIAGLSKLVTKEDLE 819
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEI 208
+ F +GN+ +V+++ D+ GKSKGF FI+F + A +A + N ++ V+LA+
Sbjct: 820 TLFKTYGNVKDVRMILDDKGKSKGFAFIEFTTEPEA-RAALAANNHELKKRRMAVTLAD- 877
Query: 209 VPGKKVFPKVKPP-LLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKHIG 267
+V PK K P + R + V NLP N ++ + I + +D +
Sbjct: 878 ---SRVKPKNKAPGYREEVRNRSVRVKNLPPNTQEGLLQQALEKHAKIKRVEVFADINEA 934
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKPGVSITNPTKAPKKP 317
+E P A + + F L++ T PT P P
Sbjct: 935 ELELESPAEAGKLLLRQDPIEFNGNTLQIVAENTT-----GPPTSCPIAP 979
Score = 63.9 bits (154), Expect = 1e-07, Method: Composition-based stats.
Identities = 73/315 (23%), Positives = 134/315 (42%), Gaps = 62/315 (19%)
Query: 23 RSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVF 82
+ ++EN+ V+ V +L V+++ L FK G +R+V++ + N A + F
Sbjct: 631 KRDRENSTVF------VGDLPAGVEDEELRALFKDCGVIREVKITQLPNSL---VATVEF 681
Query: 83 ----NTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNL 138
+ PA K + + G I V L + ++V N
Sbjct: 682 LERDSVPAALTKDKKRVRGKEIA--------VHLA---------------WRSTLYVTNF 718
Query: 139 VETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQH 198
E D+ +++ F K+G I +V+ + ++ F ++Q+ S +AE A +E+NG ++
Sbjct: 719 PEDADDTFIRTLFGKYGEIFDVRWPSKKFKSTRRFCYVQYTSPTSAENA-LELNGTDMEE 777
Query: 199 N---STFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTI 255
S ++S E + K A + +I++A L + + E LF +G +
Sbjct: 778 GRRLSVYISNPE---------RRKERTDSDANEREIYIAGLSKLVTKEDLETLFKTYGNV 828
Query: 256 TSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKPGVSITNP 310
++ D K FIEF A A++ N H K + + VTL+ ++ P
Sbjct: 829 KDVRMILDDKGKSKGFAFIEFTTEPEARAALAA-NNHELKKRRMAVTLADSR-----VKP 882
Query: 311 TKAPKKPAYIDEVKN 325
K P Y +EV+N
Sbjct: 883 KN--KAPGYREEVRN 895
Score = 57.8 bits (138), Expect = 8e-06, Method: Composition-based stats.
Identities = 58/223 (26%), Positives = 94/223 (42%), Gaps = 24/223 (10%)
Query: 16 ISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESR 75
IS+ E R + + E E+++ L V + L FK +G ++DVR+ + +S+
Sbjct: 785 ISNPE--RRKERTDSDANEREIYIAGLSKLVTKEDLETLFKTYGNVKDVRMILDDKGKSK 842
Query: 76 GFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFV 135
GFA I F T EA+ A + N H + + + +T + + ++K G E + + V V
Sbjct: 843 GFAFIEFTTEPEARAA-LAANNHELKKRRMAVTLADSRVKPKNKAPGYRE-EVRNRSVRV 900
Query: 136 KNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAI-----IE 190
KNL E L+ K I V++ D N ++ S A K + IE
Sbjct: 901 KNLPPNTQEGLLQQALEKHAKIKRVEVFADINEAE-----LELESPAEAGKLLLRQDPIE 955
Query: 191 MNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFV 233
NG +Q IV P P+ P+ + FV
Sbjct: 956 FNGNTLQ----------IVAENTTGPPTSCPIAPPSGTSGFFV 988
>gi|297791731|ref|XP_002863750.1| hypothetical protein ARALYDRAFT_331131 [Arabidopsis lyrata subsp.
lyrata]
gi|297309585|gb|EFH40009.1| hypothetical protein ARALYDRAFT_331131 [Arabidopsis lyrata subsp.
lyrata]
Length = 400
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 74/289 (25%), Positives = 132/289 (45%), Gaps = 30/289 (10%)
Query: 22 ARSNKENNKVYKENE-LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDE-SRGFAI 79
+R NK N EN+ + V +L +D L + F G + V+V RNK+ + G+
Sbjct: 77 SRGNKYQNASNTENKTIWVGDLLHWMDENYLNSSFSSAGEISSVKVIRNKHTGLTEGYGF 136
Query: 80 IVFNTPAEAKKARVEMNGH--LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKN 137
+ F + A+K E+NG L +P + + G++ GP+ +FV +
Sbjct: 137 VEFVSHDVAEKVLQELNGEAMLNAEQPFRLNWASFSTGEKRLENGPDLS------IFVGD 190
Query: 138 LVETVDEEELKSHFI-KFGNIIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAIIEMNGRM 195
L V + L+ F K+ ++ K+V D N G+SKG+GF++F KA++EMNG
Sbjct: 191 LAPEVTDTMLEQIFSEKYPSVKNAKVVIDGNTGRSKGYGFVRFGDDSERSKAMLEMNGVK 250
Query: 196 IQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTI 255
+ + A P + + L S++ + + + FA +G I
Sbjct: 251 CCGRAMRIGPA-----------------TPRKPSGYHQQGLDSSVTDDDLRQPFAGYGEI 293
Query: 256 TSSSLVSDKHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKPG 304
S + K GFI+F+ ++A A+ +NG + + ++++ G PG
Sbjct: 294 VSVKIPVGKGCGFIQFVNRENAEEALEKLNGSMIGKQTVRLSW-GRNPG 341
>gi|9758270|dbj|BAB08769.1| unnamed protein product [Arabidopsis thaliana]
Length = 390
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/279 (24%), Positives = 127/279 (45%), Gaps = 26/279 (9%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L + +L+ +D +++ F + G +V RNK +S G+ I F + + A++
Sbjct: 62 LWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVSHSVAERVLQTY 121
Query: 96 NGHLIGS--KPVIITFVELKPGQ-RSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFI 152
NG + S + + + + G+ R + GP+ +FV +L V + L F
Sbjct: 122 NGAPMPSTEQTFRLNWAQAGAGEKRFQTEGPDHT------IFVGDLAPEVTDYMLSDTFK 175
Query: 153 K-FGNIIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVP 210
+G++ K+V D G+SKG+GF++F +A+ EMNG Q+ ST
Sbjct: 176 NVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNG---QYCSTRPMRIGPAA 232
Query: 211 GKKVFPKVKPPLLQPAR----------KNKIFVANLPSNINNSEFEELFARFGTITSSSL 260
K P ++P + Q + IFV L +N+ + E + +F +FG + +
Sbjct: 233 NKNALP-MQPAMYQNTQGANAGDNDPNNTTIFVGGLDANVTDDELKSIFGQFGELLHVKI 291
Query: 261 VSDKHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299
K GF+++ A HA+S +NG + ++++
Sbjct: 292 PPGKRCGFVQYANKASAEHALSVLNGTQLGGQSIRLSWG 330
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 92/194 (47%), Gaps = 19/194 (9%)
Query: 115 GQRSKPVGPEEKQYKKD--KVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSK 171
GQ +G + D +++ +L + +DE + S F + G K++R++ G+S+
Sbjct: 42 GQHQYGIGSQNPGSASDVKSLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSE 101
Query: 172 GFGFIQFFSYKAAEKAIIEMNGR-MIQHNSTF-VSLAEIVPGKKVFPKVKPPLLQPARKN 229
G+GFI+F S+ AE+ + NG M TF ++ A+ G+K F P +
Sbjct: 102 GYGFIEFVSHSVAERVLQTYNGAPMPSTEQTFRLNWAQAGAGEKRFQTEGP-------DH 154
Query: 230 KIFVANLPSNINNSEFEELFAR-FGTITSSSLVSD------KHIGFIEFIMPKHATHAVS 282
IFV +L + + + F +G++ + +V D K GF+ F A++
Sbjct: 155 TIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMT 214
Query: 283 TMNGHVFKSKPLKV 296
MNG ++P+++
Sbjct: 215 EMNGQYCSTRPMRI 228
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 87/183 (47%), Gaps = 15/183 (8%)
Query: 34 ENELHVNNLEPSVDNQALINEFKK-FGTLRDVRVARNKN-DESRGFAIIVFNTPAEAKKA 91
++ + V +L P V + L + FK +G+++ +V ++ S+G+ + F E +A
Sbjct: 153 DHTIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRA 212
Query: 92 RVEMNGHLIGSKPVII------TFVELKPG--QRSKPVGPEEKQYKKDKVFVKNLVETVD 143
EMNG ++P+ I + ++P Q ++ + +FV L V
Sbjct: 213 MTEMNGQYCSTRPMRIGPAANKNALPMQPAMYQNTQGANAGDNDPNNTTIFVGGLDANVT 272
Query: 144 EEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFV 203
++ELKS F +FG ++ VKI K GF+Q+ + +AE A+ +NG + S +
Sbjct: 273 DDELKSIFGQFGELLHVKIP-----PGKRCGFVQYANKASAEHALSVLNGTQLGGQSIRL 327
Query: 204 SLA 206
S
Sbjct: 328 SWG 330
>gi|195489681|ref|XP_002092839.1| GE11444 [Drosophila yakuba]
gi|194178940|gb|EDW92551.1| GE11444 [Drosophila yakuba]
Length = 307
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 95/164 (57%), Gaps = 8/164 (4%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+++ NLE S+DN+A+ + F FG + + VA++++ SRG+ + F++ A+ A ++N
Sbjct: 115 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVN 174
Query: 97 GHLIGSKPV-IITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
G L ++ V ++ F+ + + +EK ++VKNL E E+ L+ F +G
Sbjct: 175 GMLCNNQKVHVVKFIPRRDRE-------QEKATHFKNLYVKNLSEEFTEQHLREMFEPYG 227
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHN 199
I K++ DE G+S+ FGF+ + + ++A A+I ++G+ + N
Sbjct: 228 RITSHKLMLDEEGRSRRFGFVAYENPQSALAAVIGLHGKQLGDN 271
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 78/160 (48%), Gaps = 13/160 (8%)
Query: 132 KVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEM 191
K+++KNL ++D + + F FGNI+ + +DE+G S+G+GF+ F S +AA AI ++
Sbjct: 114 KIYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKV 173
Query: 192 NGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFAR 251
NG + + V K P+ + ++V NL E+F
Sbjct: 174 NGMLCNNQKVHVV--------KFIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREMFEP 225
Query: 252 FGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNG 286
+G ITS L+ D + GF+ + P+ A AV ++G
Sbjct: 226 YGRITSHKLMLDEEGRSRRFGFVAYENPQSALAAVIGLHG 265
>gi|365192966|gb|AEW68341.1| putative nuclear acid binding protein [Medicago sativa]
Length = 409
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/274 (23%), Positives = 123/274 (44%), Gaps = 18/274 (6%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L + +L+ +D L N F G + V+V RNK N++S G+ + F + A A++
Sbjct: 74 LWIGDLQYWMDENYLYNCFSHTGEVGSVKVIRNKLNNQSEGYGFLEFISRAGAERVLQTY 133
Query: 96 NGHLI--GSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHF-I 152
NG ++ G + + + G++ P+ +FV +L V + L F
Sbjct: 134 NGTIMPNGGQNFRLNWATFSSGEKRHDDSPDYT------IFVGDLAADVSDHHLTEVFRT 187
Query: 153 KFGNIIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPG 211
++ ++ K+V D N G+SKG+GF++F +A+ EM G + + A
Sbjct: 188 RYNSVKGAKVVIDRNTGRSKGYGFVRFADESEQMRAMTEMQGVLCSTRPMRIGPASNKNL 247
Query: 212 KKVFPKVKPPLLQPARKNK-------IFVANLPSNINNSEFEELFARFGTITSSSLVSDK 264
K Q +N+ IFV NL N+ + +++F ++G + + S K
Sbjct: 248 GTQTSKASYQNPQGGAQNENDPNNTTIFVGNLDPNVTDEHLKQVFTQYGELVHVKIPSGK 307
Query: 265 HIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTL 298
GF++F A A+ +NG + + ++++
Sbjct: 308 RCGFVQFADRSSAEEALRVLNGTLLGGQNVRLSW 341
>gi|84468322|dbj|BAE71244.1| putative DNA binding protein [Trifolium pratense]
Length = 402
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/279 (24%), Positives = 125/279 (44%), Gaps = 20/279 (7%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKN-DESRGFAIIVFNTPAEAKKARVEM 95
L + +L+ +D L F G + V+V RNK +S G+ I FNT A A++
Sbjct: 59 LWIGDLQYWMDENYLYTCFGNTGEVTSVKVIRNKQTSQSEGYGFIEFNTRASAERVLQTY 118
Query: 96 NGHLI--GSKPVIITFVELKPGQRS--KPVGPEEKQYKKDKVFVKNLVETVDEEELKSHF 151
G ++ G + + + G+RS + GP+ +FV +L V + L+ F
Sbjct: 119 QGAIMPNGGQSYRLNWATFSAGERSSRQDDGPDHT------IFVGDLAADVTDYLLQETF 172
Query: 152 -IKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHN------STFV 203
++ ++ K+V D G+SKG+GF++F +A+ EM G + +T
Sbjct: 173 RARYNSVKGAKVVIDRLTGRSKGYGFVRFADEGEQMRAMTEMQGVLCSTRPMRIGPATNK 232
Query: 204 SLAEIVPGKKVFPKVKPPLLQPARKNK-IFVANLPSNINNSEFEELFARFGTITSSSLVS 262
+ A K + + N IFV NL N+ + ++F+++G + + S
Sbjct: 233 NPAATTQAKASYSNTPGGQSENDPNNTTIFVGNLDPNVTDDHLRQVFSQYGELVHVKIPS 292
Query: 263 DKHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGT 301
K GF++F A A+ +NG + + ++++ T
Sbjct: 293 GKRCGFVQFSDRSSAEEAIRVLNGTLLGGQNVRLSWGRT 331
>gi|19922904|ref|NP_611924.1| CG4612, isoform A [Drosophila melanogaster]
gi|386768569|ref|NP_001246493.1| CG4612, isoform C [Drosophila melanogaster]
gi|195353161|ref|XP_002043074.1| GM11822 [Drosophila sechellia]
gi|195586434|ref|XP_002082979.1| GD24944 [Drosophila simulans]
gi|7291799|gb|AAF47219.1| CG4612, isoform A [Drosophila melanogaster]
gi|16648374|gb|AAL25452.1| LD36772p [Drosophila melanogaster]
gi|194127162|gb|EDW49205.1| GM11822 [Drosophila sechellia]
gi|194194988|gb|EDX08564.1| GD24944 [Drosophila simulans]
gi|220946122|gb|ACL85604.1| CG4612-PA [synthetic construct]
gi|220955844|gb|ACL90465.1| CG4612-PA [synthetic construct]
gi|383302680|gb|AFH08246.1| CG4612, isoform C [Drosophila melanogaster]
Length = 307
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 95/164 (57%), Gaps = 8/164 (4%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+++ NLE S+DN+A+ + F FG + + VA++++ SRG+ + F++ A+ A ++N
Sbjct: 115 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVN 174
Query: 97 GHLIGSKPV-IITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
G L ++ V ++ F+ + + +EK ++VKNL E E+ L+ F +G
Sbjct: 175 GMLCNNQKVHVVKFIPRRDRE-------QEKATHFKNLYVKNLSEEFTEQHLREMFEPYG 227
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHN 199
I K++ DE G+S+ FGF+ + + ++A A+I ++G+ + N
Sbjct: 228 RITSHKLMLDEEGRSRRFGFVAYENPQSALAAVIGLHGKQLGDN 271
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 78/160 (48%), Gaps = 13/160 (8%)
Query: 132 KVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEM 191
K+++KNL ++D + + F FGNI+ + +DE+G S+G+GF+ F S +AA AI ++
Sbjct: 114 KIYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKV 173
Query: 192 NGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFAR 251
NG + + V K P+ + ++V NL E+F
Sbjct: 174 NGMLCNNQKVHVV--------KFIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREMFEP 225
Query: 252 FGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNG 286
+G ITS L+ D + GF+ + P+ A AV ++G
Sbjct: 226 YGRITSHKLMLDEEGRSRRFGFVAYENPQSALAAVIGLHG 265
>gi|195470919|ref|XP_002087754.1| GE18193 [Drosophila yakuba]
gi|194173855|gb|EDW87466.1| GE18193 [Drosophila yakuba]
Length = 446
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 92/181 (50%), Gaps = 25/181 (13%)
Query: 130 KDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAI 188
K + V L +T+ ++E++S F+ FG + K++RD+ G+S G+GF+ + + AEKAI
Sbjct: 111 KTNLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKAI 170
Query: 189 IEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEEL 248
+NG +Q+ + VS+A P + + ++V+ LP N+ S+ E L
Sbjct: 171 NALNGLRLQNKTIKVSIAR-------------PSSESIKGANLYVSGLPKNMTQSDLESL 217
Query: 249 FARFGTITSSSLVSD-----------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVT 297
F+ +G I +S ++ D K +GFI F A A+ +NG K+ +T
Sbjct: 218 FSPYGKIITSRILCDNITDEHAAGLSKGVGFIRFDQRFEADRAIKELNGTTPKNSTEPIT 277
Query: 298 L 298
+
Sbjct: 278 V 278
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 78/164 (47%), Gaps = 18/164 (10%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L VN L ++ + + F FG + ++ R+K +S G+ + + +A+KA +
Sbjct: 114 LIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKAINAL 173
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
NG + +K + ++ P + K ++V L + + + +L+S F +G
Sbjct: 174 NGLRLQNKTIKVSIAR-----------PSSESIKGANLYVSGLPKNMTQSDLESLFSPYG 222
Query: 156 NIIEVKIVRDE------NGKSKGFGFIQFFSYKAAEKAIIEMNG 193
II +I+ D G SKG GFI+F A++AI E+NG
Sbjct: 223 KIITSRILCDNITDEHAAGLSKGVGFIRFDQRFEADRAIKELNG 266
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRD-ENGKSKGFGFIQFFSYKAAEKAIIEM 191
+FV NL +E L F FG + VK++RD ++ K KGFGF+ +Y+ A AI +
Sbjct: 365 IFVYNLAPETEENVLWQLFGPFGAVQSVKVIRDLQSNKCKGFGFVTMTNYEEAVLAIQSL 424
Query: 192 NGRMI 196
NG +
Sbjct: 425 NGYTL 429
Score = 45.1 bits (105), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
Query: 224 QPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDK------HIGFIEFIMPKHA 277
+P K + V LP ++ E LF FG + S L+ DK GF+ ++ + A
Sbjct: 107 EPDPKTNLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDA 166
Query: 278 THAVSTMNGHVFKSKPLKVTLS 299
A++ +NG ++K +KV+++
Sbjct: 167 EKAINALNGLRLQNKTIKVSIA 188
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKKARVEM 95
+ V NL P + L F FG ++ V+V R+ ++++ +GF + EA A +
Sbjct: 365 IFVYNLAPETEENVLWQLFGPFGAVQSVKVIRDLQSNKCKGFGFVTMTNYEEAVLAIQSL 424
Query: 96 NGHLIGSKPVIITF 109
NG+ +G++ + ++F
Sbjct: 425 NGYTLGNRVLQVSF 438
>gi|427789733|gb|JAA60318.1| Putative rox8 [Rhipicephalus pulchellus]
Length = 406
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/287 (23%), Positives = 123/287 (42%), Gaps = 27/287 (9%)
Query: 24 SNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFN 83
+NK+ + L+V NL+ +V + L+ F + G ++ ++ ++ + + F+
Sbjct: 2 ANKDQGNDCQPRTLYVGNLDTAVTEELLVAVFGQMGQVKGCKIIHEPGNDP--YCFVEFS 59
Query: 84 TPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVD 143
A A + MN L K + + + PG P+ K +FV +L ++
Sbjct: 60 DHQSAASALLAMNKRLCFGKEMKVNWA-TSPGNT-----PKLDTSKHHHIFVGDLSPEIE 113
Query: 144 EEELKSHFIKFGNIIEVKIVRD-ENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTF 202
+L+ F FG+I + ++VRD + KSKG+GF+ F AE AI MNG+ + +
Sbjct: 114 TTQLRDAFAPFGDISDCRVVRDPQTLKSKGYGFVSFVKKADAENAIGTMNGQWLGSRAIR 173
Query: 203 VSLAEIVPGK-------KVFPKVKPPLL-----QPARKN-KIFVANLPSNINNSEFEELF 249
+ A P + KP Q + N ++ + ++ ++ F
Sbjct: 174 TNWATRKPPANRTQAEVDITTSTKPLTFDEVYNQSSPTNCTVYCGGITQGLSEELMQKTF 233
Query: 250 ARFGTITSSSLVSDKHIGFIEFIMPKHATHAV-----STMNGHVFKS 291
+ +G I + DK FI F + ATHA+ S +NG K
Sbjct: 234 SSYGAIQEIRVFKDKGYAFIRFGTKEAATHAIVATHNSDVNGQTVKC 280
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 93/206 (45%), Gaps = 27/206 (13%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMN 192
++V NL V EE L + F + G + KI+ + + F++F +++A A++ MN
Sbjct: 15 LYVGNLDTAVTEELLVAVFGQMGQVKGCKIIHEPGNDP--YCFVEFSDHQSAASALLAMN 72
Query: 193 GRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARF 252
R+ V+ A PG P L ++ + IFV +L I ++ + FA F
Sbjct: 73 KRLCFGKEMKVNWA-TSPGNT-------PKLDTSKHHHIFVGDLSPEIETTQLRDAFAPF 124
Query: 253 GTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKPG-- 304
G I+ +V D K GF+ F+ A +A+ TMNG S+ ++ + KP
Sbjct: 125 GDISDCRVVRDPQTLKSKGYGFVSFVKKADAENAIGTMNGQWLGSRAIRTNWATRKPPAN 184
Query: 305 -----VSITNPTKAPKKPAYIDEVKN 325
V IT T KP DEV N
Sbjct: 185 RTQAEVDITTST----KPLTFDEVYN 206
>gi|149036617|gb|EDL91235.1| rCG56007, isoform CRA_a [Rattus norvegicus]
Length = 386
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 84/310 (27%), Positives = 131/310 (42%), Gaps = 39/310 (12%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK--NDESRGFAIIVFNTPAEAKKARVE 94
L+V NL V ++ F + G ++ ++ + ND + + F+ A A
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP---YCFVEFHEHRHAAAALAA 65
Query: 95 MNGHLIGSKPVIITFVELKPGQR----SKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
MNG I K V + + Q+ S V ++ VFV +L + E++K+
Sbjct: 66 MNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAA 125
Query: 151 FIKFGNIIEVKIVRD-ENGKSKGFGFIQFFSYKAAEKAIIEM-----NGRMIQHN----- 199
F FG I + ++V+D GKSKG+GF+ FF+ AE AI +M GR I+ N
Sbjct: 126 FAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 185
Query: 200 -----STFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGT 254
ST+ S + + +V + P ++ + S + + F+ FG
Sbjct: 186 PPAPKSTYESNTKQLSYDEVVSQSSP------GNCTVYCGGVTSGLTEQLMRQTFSPFGQ 239
Query: 255 ITSSSLVSDKHIGFIEFIMPKHATHAV-----STMNGHVFKSKPLKVTLSGTKPGVSITN 309
I + DK FI F + A HA+ +T+ GHV K K TL P V N
Sbjct: 240 IMEIRVFPDKGYSFIRFSSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDMINP-VQQQN 298
Query: 310 PTKAPKKPAY 319
P PAY
Sbjct: 299 QIGYP--PAY 306
>gi|194855197|ref|XP_001968493.1| GG24901 [Drosophila erecta]
gi|190660360|gb|EDV57552.1| GG24901 [Drosophila erecta]
Length = 446
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 92/181 (50%), Gaps = 25/181 (13%)
Query: 130 KDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAI 188
K + V L +T+ ++E++S F+ FG + K++RD+ G+S G+GF+ + + AEKAI
Sbjct: 111 KTNLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKAI 170
Query: 189 IEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEEL 248
+NG +Q+ + VS+A P + + ++V+ LP N+ S+ E L
Sbjct: 171 NALNGLRLQNKTIKVSIAR-------------PSSESIKGANLYVSGLPKNMTQSDLESL 217
Query: 249 FARFGTITSSSLVSD-----------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVT 297
F+ +G I +S ++ D K +GFI F A A+ +NG K+ +T
Sbjct: 218 FSPYGKIITSRILCDNITDEHAAGLSKGVGFIRFDQRFEADRAIKELNGTTPKNSTEPIT 277
Query: 298 L 298
+
Sbjct: 278 V 278
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 78/164 (47%), Gaps = 18/164 (10%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L VN L ++ + + F FG + ++ R+K +S G+ + + +A+KA +
Sbjct: 114 LIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKAINAL 173
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
NG + +K + ++ P + K ++V L + + + +L+S F +G
Sbjct: 174 NGLRLQNKTIKVSIAR-----------PSSESIKGANLYVSGLPKNMTQSDLESLFSPYG 222
Query: 156 NIIEVKIVRDE------NGKSKGFGFIQFFSYKAAEKAIIEMNG 193
II +I+ D G SKG GFI+F A++AI E+NG
Sbjct: 223 KIITSRILCDNITDEHAAGLSKGVGFIRFDQRFEADRAIKELNG 266
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRD-ENGKSKGFGFIQFFSYKAAEKAIIEM 191
+FV NL +E L F FG + VK++RD ++ K KGFGF+ +Y+ A AI +
Sbjct: 365 IFVYNLAPETEENVLWQLFGPFGAVQSVKVIRDLQSNKCKGFGFVTMTNYEEAVLAIQSL 424
Query: 192 NGRMI 196
NG +
Sbjct: 425 NGYTL 429
Score = 45.1 bits (105), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
Query: 224 QPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDK------HIGFIEFIMPKHA 277
+P K + V LP ++ E LF FG + S L+ DK GF+ ++ + A
Sbjct: 107 EPDPKTNLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDA 166
Query: 278 THAVSTMNGHVFKSKPLKVTLS 299
A++ +NG ++K +KV+++
Sbjct: 167 EKAINALNGLRLQNKTIKVSIA 188
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKKARVEM 95
+ V NL P + L F FG ++ V+V R+ ++++ +GF + EA A +
Sbjct: 365 IFVYNLAPETEENVLWQLFGPFGAVQSVKVIRDLQSNKCKGFGFVTMTNYEEAVLAIQSL 424
Query: 96 NGHLIGSKPVIITF 109
NG+ +G++ + ++F
Sbjct: 425 NGYTLGNRVLQVSF 438
>gi|326432018|gb|EGD77588.1| hypothetical protein PTSG_08685 [Salpingoeca sp. ATCC 50818]
Length = 517
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 75/311 (24%), Positives = 128/311 (41%), Gaps = 72/311 (23%)
Query: 34 ENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKAR 92
N L +N L PSV L FK FGT++ +++ ++ +S G+ + F T EA +A
Sbjct: 83 RNNLIINYLPPSVTESDLRELFKPFGTIKAIKIMTDRYTHKSLGYGFVEFETAEEAARAI 142
Query: 93 VEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFI 152
MNG +K + ++ P +++KNL T+ E++L++ F
Sbjct: 143 QAMNGRQYMNKRLKVSIAR-----------PSSSSITGANLYIKNLPRTITEDQLRAIFN 191
Query: 153 KFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMN-------------------- 192
FG II +++ D + KG F++F AE+A+ E+N
Sbjct: 192 PFGEIISARLLYDGD-VPKGIAFVRFDKRACAERAVAELNNTVPANCSQPIAVKFADTNR 250
Query: 193 --------------GRMIQHNSTFV-------------SLAEIVPGKKVFPKVKPPLLQP 225
G M+ + S + ++A + PG F + P +L P
Sbjct: 251 RSRAPSGSSAGMHQGSMMAYPSMPMPYGGGFQQPQPQPTMAPLQPG---FVPMSPDMLPP 307
Query: 226 ARKNK----IFVANLPSNINNSEFEELFARFGTITSS-----SLVSDKHIGFIEFIMPKH 276
+ + +FV NLP ++ F LFA FG + S+ SL + GF+
Sbjct: 308 SARTPYGYCLFVFNLPPFMDEDGFARLFANFGGVVSASISRKSLSQARRYGFVTMRDFGE 367
Query: 277 ATHAVSTMNGH 287
A A+ +N +
Sbjct: 368 AATAIQNLNDY 378
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 82/179 (45%), Gaps = 20/179 (11%)
Query: 130 KDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAI 188
++ + + L +V E +L+ F FG I +KI+ D KS G+GF++F + + A +AI
Sbjct: 83 RNNLIINYLPPSVTESDLRELFKPFGTIKAIKIMTDRYTHKSLGYGFVEFETAEEAARAI 142
Query: 189 IEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEEL 248
MNGR + VS+A P +++ NLP I + +
Sbjct: 143 QAMNGRQYMNKRLKVSIAR-------------PSSSSITGANLYIKNLPRTITEDQLRAI 189
Query: 249 FARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFK--SKPLKVTLSGT 301
F FG I S+ L+ D K I F+ F A AV+ +N V S+P+ V + T
Sbjct: 190 FNPFGEIISARLLYDGDVPKGIAFVRFDKRACAERAVAELNNTVPANCSQPIAVKFADT 248
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 46/81 (56%), Gaps = 6/81 (7%)
Query: 225 PARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKHI------GFIEFIMPKHAT 278
P +N + + LP ++ S+ ELF FGTI + +++D++ GF+EF + A
Sbjct: 80 PEPRNNLIINYLPPSVTESDLRELFKPFGTIKAIKIMTDRYTHKSLGYGFVEFETAEEAA 139
Query: 279 HAVSTMNGHVFKSKPLKVTLS 299
A+ MNG + +K LKV+++
Sbjct: 140 RAIQAMNGRQYMNKRLKVSIA 160
>gi|19549688|ref|NP_599124.1| RNA-binding protein 9, isoform B [Drosophila melanogaster]
gi|19549694|ref|NP_599127.1| RNA-binding protein 9, isoform C [Drosophila melanogaster]
gi|221330653|ref|NP_476937.3| RNA-binding protein 9, isoform I [Drosophila melanogaster]
gi|158226|gb|AAC13645.1| RNA-binding protein [Drosophila melanogaster]
gi|22945349|gb|AAF51177.2| RNA-binding protein 9, isoform B [Drosophila melanogaster]
gi|22945350|gb|AAF51178.2| RNA-binding protein 9, isoform C [Drosophila melanogaster]
gi|220901922|gb|AAF51179.4| RNA-binding protein 9, isoform I [Drosophila melanogaster]
Length = 444
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 92/181 (50%), Gaps = 25/181 (13%)
Query: 130 KDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAI 188
K + V L +T+ ++E++S F+ FG + K++RD+ G+S G+GF+ + + AEKAI
Sbjct: 109 KTNLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKAI 168
Query: 189 IEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEEL 248
+NG +Q+ + VS+A P + + ++V+ LP N+ S+ E L
Sbjct: 169 NALNGLRLQNKTIKVSIAR-------------PSSESIKGANLYVSGLPKNMTQSDLESL 215
Query: 249 FARFGTITSSSLVSD-----------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVT 297
F+ +G I +S ++ D K +GFI F A A+ +NG K+ +T
Sbjct: 216 FSPYGKIITSRILCDNITDEHAAGLSKGVGFIRFDQRFEADRAIKELNGTTPKNSTEPIT 275
Query: 298 L 298
+
Sbjct: 276 V 276
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 78/164 (47%), Gaps = 18/164 (10%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L VN L ++ + + F FG + ++ R+K +S G+ + + +A+KA +
Sbjct: 112 LIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKAINAL 171
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
NG + +K + ++ P + K ++V L + + + +L+S F +G
Sbjct: 172 NGLRLQNKTIKVSIAR-----------PSSESIKGANLYVSGLPKNMTQSDLESLFSPYG 220
Query: 156 NIIEVKIVRDE------NGKSKGFGFIQFFSYKAAEKAIIEMNG 193
II +I+ D G SKG GFI+F A++AI E+NG
Sbjct: 221 KIITSRILCDNITDEHAAGLSKGVGFIRFDQRFEADRAIKELNG 264
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRD-ENGKSKGFGFIQFFSYKAAEKAIIEM 191
+FV NL +E L F FG + VK++RD ++ K KGFGF+ +Y+ A AI +
Sbjct: 363 IFVYNLAPDTEENVLWQLFGPFGAVQSVKVIRDLQSNKCKGFGFVTMTNYEEAVLAIQSL 422
Query: 192 NGRMI 196
NG +
Sbjct: 423 NGYTL 427
Score = 45.1 bits (105), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
Query: 224 QPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDK------HIGFIEFIMPKHA 277
+P K + V LP ++ E LF FG + S L+ DK GF+ ++ + A
Sbjct: 105 EPDPKTNLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDA 164
Query: 278 THAVSTMNGHVFKSKPLKVTLS 299
A++ +NG ++K +KV+++
Sbjct: 165 EKAINALNGLRLQNKTIKVSIA 186
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKKARVEM 95
+ V NL P + L F FG ++ V+V R+ ++++ +GF + EA A +
Sbjct: 363 IFVYNLAPDTEENVLWQLFGPFGAVQSVKVIRDLQSNKCKGFGFVTMTNYEEAVLAIQSL 422
Query: 96 NGHLIGSKPVIITF 109
NG+ +G++ + ++F
Sbjct: 423 NGYTLGNRVLQVSF 436
>gi|7322081|gb|AAB25519.2| RRM9 [Drosophila melanogaster]
Length = 444
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 92/181 (50%), Gaps = 25/181 (13%)
Query: 130 KDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAI 188
K + V L +T+ ++E++S F+ FG + K++RD+ G+S G+GF+ + + AEKAI
Sbjct: 109 KTNLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKAI 168
Query: 189 IEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEEL 248
+NG +Q+ + VS+A P + + ++V+ LP N+ S+ E L
Sbjct: 169 NALNGLRLQNKTIKVSIAR-------------PSSESIKGANLYVSGLPKNMTQSDLESL 215
Query: 249 FARFGTITSSSLVSD-----------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVT 297
F+ +G I +S ++ D K +GFI F A A+ +NG K+ +T
Sbjct: 216 FSPYGKIITSRILCDNITGEHAAGLSKGVGFIRFDQRFEADRAIKELNGTTPKNSTEPIT 275
Query: 298 L 298
+
Sbjct: 276 V 276
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 78/164 (47%), Gaps = 18/164 (10%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L VN L ++ + + F FG + ++ R+K +S G+ + + +A+KA +
Sbjct: 112 LIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKAINAL 171
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
NG + +K + ++ P + K ++V L + + + +L+S F +G
Sbjct: 172 NGLRLQNKTIKVSIAR-----------PSSESIKGANLYVSGLPKNMTQSDLESLFSPYG 220
Query: 156 NIIEVKIVRDE------NGKSKGFGFIQFFSYKAAEKAIIEMNG 193
II +I+ D G SKG GFI+F A++AI E+NG
Sbjct: 221 KIITSRILCDNITGEHAAGLSKGVGFIRFDQRFEADRAIKELNG 264
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRD-ENGKSKGFGFIQFFSYKAAEKAIIEM 191
+FV NL +E L F FG + VK++RD ++ K KGFGF+ +Y+ A AI +
Sbjct: 363 IFVYNLAPDTEENVLWQLFGPFGAVQSVKVIRDLQSNKCKGFGFVTMTNYEEAVLAIQSL 422
Query: 192 NGRMI 196
NG +
Sbjct: 423 NGYTL 427
Score = 45.1 bits (105), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
Query: 224 QPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDK------HIGFIEFIMPKHA 277
+P K + V LP ++ E LF FG + S L+ DK GF+ ++ + A
Sbjct: 105 EPDPKTNLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDA 164
Query: 278 THAVSTMNGHVFKSKPLKVTLS 299
A++ +NG ++K +KV+++
Sbjct: 165 EKAINALNGLRLQNKTIKVSIA 186
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKKARVEM 95
+ V NL P + L F FG ++ V+V R+ ++++ +GF + EA A +
Sbjct: 363 IFVYNLAPDTEENVLWQLFGPFGAVQSVKVIRDLQSNKCKGFGFVTMTNYEEAVLAIQSL 422
Query: 96 NGHLIGSKPVIITF 109
NG+ +G++ + ++F
Sbjct: 423 NGYTLGNRVLQVSF 436
>gi|6755783|ref|NP_035715.1| nucleolysin TIA-1 isoform 1 [Mus musculus]
gi|1729966|sp|P52912.1|TIA1_MOUSE RecName: Full=Nucleolysin TIA-1; AltName: Full=RNA-binding protein
TIA-1; AltName: Full=T-cell-restricted intracellular
antigen-1; Short=TIA-1
gi|437057|gb|AAA03711.1| TIA [Mus musculus]
gi|1616673|gb|AAC52871.1| RNA binding protein TIA-1 [Mus musculus]
gi|26353510|dbj|BAC40385.1| unnamed protein product [Mus musculus]
gi|74188216|dbj|BAE25782.1| unnamed protein product [Mus musculus]
gi|148666751|gb|EDK99167.1| cytotoxic granule-associated RNA binding protein 1, isoform CRA_a
[Mus musculus]
Length = 386
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 77/294 (26%), Positives = 125/294 (42%), Gaps = 36/294 (12%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK--NDESRGFAIIVFNTPAEAKKARVE 94
L+V NL V ++ F + G ++ ++ + ND + + F+ A A
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP---YCFVEFHEHRHAAAALAA 65
Query: 95 MNGHLIGSKPVIITFVELKPGQR----SKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
MNG I K V + + Q+ S V ++ VFV +L + E++K+
Sbjct: 66 MNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAA 125
Query: 151 FIKFGNIIEVKIVRD-ENGKSKGFGFIQFFSYKAAEKAIIEM-----NGRMIQHN----- 199
F FG I + ++V+D GKSKG+GF+ FF+ AE AI +M GR I+ N
Sbjct: 126 FAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 185
Query: 200 -----STFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGT 254
ST+ S + + +V + P ++ + S + + F+ FG
Sbjct: 186 PPAPKSTYESNTKQLSYDEVVSQSSP------NNCTVYCGGVTSGLTEQLMRQTFSPFGQ 239
Query: 255 ITSSSLVSDKHIGFIEFIMPKHATHAV-----STMNGHVFKSKPLKVTLSGTKP 303
I + DK F+ F + A HA+ +T+ GHV K K TL P
Sbjct: 240 IMEIRVFPDKGYSFVRFSSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDMINP 293
>gi|164657762|ref|XP_001730007.1| hypothetical protein MGL_2993 [Malassezia globosa CBS 7966]
gi|159103901|gb|EDP42793.1| hypothetical protein MGL_2993 [Malassezia globosa CBS 7966]
Length = 638
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 108/202 (53%), Gaps = 30/202 (14%)
Query: 17 SDDEGARSNKENNKVYKENELH--------VNNLEPSVDNQALINEFKKFGTLRDVRVAR 68
+D E A S K++ EN H V L +VDN L +EF+++GT+ D RV
Sbjct: 368 ADAEPASSTKKSKTDSNENPTHDNGIKTLWVGQLSWNVDNDWLKSEFEQYGTVLDARVQC 427
Query: 69 NKND-ESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEE-- 125
+++ SRGF + F T AEA +A E +G + + + V+L+P + GP++
Sbjct: 428 DRDSGRSRGFGYVDFATSAEALRASKEAHGKELDGRALR---VDLQPAR-----GPQDRA 479
Query: 126 ----KQYKKDK------VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRD-ENGKSKGFG 174
K +K ++ +F+ L + E+++ + F +FG + V++ ++ ++G+ KGFG
Sbjct: 480 ESRAKHFKDERSAPSNTLFIGGLAWALTEDDIWNAFAEFGEVTGVRLPKEIDSGRPKGFG 539
Query: 175 FIQFFSYKAAEKAIIEMNGRMI 196
+++F S A KA+ MNG+ +
Sbjct: 540 YVEFVSQDNAAKALETMNGQAL 561
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 90/182 (49%), Gaps = 11/182 (6%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRD-ENGKSKGFGFIQFFSYKAAEKAIIEM 191
++V L VD + LKS F ++G +++ ++ D ++G+S+GFG++ F + A +A E
Sbjct: 396 LWVGQLSWNVDNDWLKSEFEQYGTVLDARVQCDRDSGRSRGFGYVDFATSAEALRASKEA 455
Query: 192 NGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARK---NKIFVANLPSNINNSEFEEL 248
+G+ + + V L + G + + + + R N +F+ L + +
Sbjct: 456 HGKELDGRALRVDL-QPARGPQDRAESRAKHFKDERSAPSNTLFIGGLAWALTEDDIWNA 514
Query: 249 FARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
FA FG +T L + K G++EF+ +A A+ TMNG +P+++ +G +
Sbjct: 515 FAEFGEVTGVRLPKEIDSGRPKGFGYVEFVSQDNAAKALETMNGQALGGRPIRIDFAGKR 574
Query: 303 PG 304
G
Sbjct: 575 DG 576
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 35 NELHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKKARV 93
N L + L ++ + N F +FG + VR+ + + +GF + F + A KA
Sbjct: 495 NTLFIGGLAWALTEDDIWNAFAEFGEVTGVRLPKEIDSGRPKGFGYVEFVSQDNAAKALE 554
Query: 94 EMNGHLIGSKPVIITFVELKPG 115
MNG +G +P+ I F + G
Sbjct: 555 TMNGQALGGRPIRIDFAGKRDG 576
>gi|405963265|gb|EKC28854.1| Polyadenylate-binding protein 1 [Crassostrea gigas]
Length = 172
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 84/168 (50%), Gaps = 11/168 (6%)
Query: 31 VYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAK 89
++ L+V +L P V L +F G + +RV R S G+A + F +A+
Sbjct: 11 IHPMTSLYVGDLHPDVTEDMLYEKFSTAGPVLSIRVCRVLFTRRSLGYAYVDFKHLEDAE 70
Query: 90 KARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKS 149
A MN I +P+ IT+ + P R VG VF+KNL +++D + L
Sbjct: 71 TALNTMNYDTIKGQPIRITWYQRDPSPRKSGVG---------NVFIKNLDKSIDNKALYD 121
Query: 150 HFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQ 197
F FGNI+ KIV DE+G +G+GF+ F ++A AI +NG M+
Sbjct: 122 TFSAFGNILSCKIVCDEHG-FRGYGFVHFEKEESATIAIERVNGTMLH 168
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 79/178 (44%), Gaps = 19/178 (10%)
Query: 120 PVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQF 178
P GP + ++V +L V E+ L F G ++ +++ R +S G+ ++ F
Sbjct: 7 PAGP---IHPMTSLYVGDLHPDVTEDMLYEKFSTAGPVLSIRVCRVLFTRRSLGYAYVDF 63
Query: 179 FSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
+ AE A+ MN I+ ++ + + P + + +F+ NL
Sbjct: 64 KHLEDAETALNTMNYDTIKGQPIRITWYQ-----------RDPSPRKSGVGNVFIKNLDK 112
Query: 239 NINNSEFEELFARFGTITSSSLVSDKH----IGFIEFIMPKHATHAVSTMNGHVFKSK 292
+I+N + F+ FG I S +V D+H GF+ F + AT A+ +NG + K
Sbjct: 113 SIDNKALYDTFSAFGNILSCKIVCDEHGFRGYGFVHFEKEESATIAIERVNGTMLHGK 170
>gi|410298560|gb|JAA27880.1| TIA1 cytotoxic granule-associated RNA binding protein [Pan
troglodytes]
Length = 388
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 80/298 (26%), Positives = 124/298 (41%), Gaps = 42/298 (14%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLR------DVRVARNKNDESRGFAIIVFNTPAEAKK 90
L+V NL V ++ F + G + DVR A N + + F+ A
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDVRTAGNDP-----YCFVEFHEHRHAAA 63
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQR----SKPVGPEEKQYKKDKVFVKNLVETVDEEE 146
A MNG I K V + + Q+ S V ++ VFV +L + E+
Sbjct: 64 ALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTED 123
Query: 147 LKSHFIKFGNIIEVKIVRD-ENGKSKGFGFIQFFSYKAAEKAIIEM-----NGRMIQHN- 199
+K+ F FG I + ++V+D GKSKG+GF+ FF+ AE AI +M GR I+ N
Sbjct: 124 IKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 183
Query: 200 ---------STFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFA 250
ST+ S + + +V + P ++ + S + + F+
Sbjct: 184 ATRKPPAPKSTYESNTKQLSYDEVVNQSSP------SNCTVYCGGVTSGLTEQLMRQTFS 237
Query: 251 RFGTITSSSLVSDKHIGFIEFIMPKHATHAV-----STMNGHVFKSKPLKVTLSGTKP 303
FG I + DK F+ F + A HA+ +T+ GHV K K TL P
Sbjct: 238 PFGQIMEIRVFPDKGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDMINP 295
>gi|160331003|ref|XP_001712209.1| pab1 [Hemiselmis andersenii]
gi|159765656|gb|ABW97884.1| pab1 [Hemiselmis andersenii]
Length = 502
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 81/290 (27%), Positives = 133/290 (45%), Gaps = 54/290 (18%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L ++ + + F G L+ V++ R+ + E G+ + F +A++A ++
Sbjct: 42 LYVGDLPLNLKEEDIEKIFLTIGPLKSVKIYRDISSGEFMGYCFVEFENFKDAERALTKL 101
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDK---------VFVKNLVETVDEEE 146
N + P + KP+ Y+KDK +F+KNL D +
Sbjct: 102 NYYF-------------DPEKMKKPL--RLMWYQKDKFLLKSGGGNIFIKNLPLFFDSKS 146
Query: 147 LKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLA 206
L+ F+ FG I+ K+ DENG S G+GF+ F KA++ AI + NG
Sbjct: 147 LEKMFLDFGKILSCKVALDENGTSLGYGFVHFEDEKASKIAIEKTNGL------------ 194
Query: 207 EIVPGKKVFPKVKPPLLQPARKN---------KIFVANL-PSNINNSEFEELFARFGTIT 256
I+ KK+F V P L + RKN I++ N+ P N N + ++LF FG IT
Sbjct: 195 -IIGEKKIF--VGPFLSRKDRKNFGMTKTGFTNIYIKNISPENCNETFIKDLFDIFGKIT 251
Query: 257 SSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
S + + K F+ + +P+ A A+ MN K+ L V + TK
Sbjct: 252 SIYIPKNNNFTKGFAFVNYELPEEAEDAIFRMNKKKIKNLTLYVGKAETK 301
>gi|255944605|ref|XP_002563070.1| Pc20g05340 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211587805|emb|CAP85863.1| Pc20g05340 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 1257
Score = 85.9 bits (211), Expect = 2e-14, Method: Composition-based stats.
Identities = 71/294 (24%), Positives = 133/294 (45%), Gaps = 27/294 (9%)
Query: 23 RSNKENN----KVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFA 78
R N +N ++ + + + N P+ D L N F K+G + DVR+ K D SR F+
Sbjct: 871 RFNNTDNIIDVRIGAQTTVWITNYPPTADEDYLRNLFNKYGEVVDVRMPSLKFDTSRRFS 930
Query: 79 IIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNL 138
+ F+T + A A E++G + + PGQ++ GP +Y+ +++V N+
Sbjct: 931 YLQFDTSSAAHHA-TELHGMRFEDGTRLSVKIS-DPGQKTARTGP---RYEGREIYVSNI 985
Query: 139 VETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQH 198
+E++L+ F KFG I ++ I R G S+GFGF+ F + AA A + MN + +
Sbjct: 986 AWDANEKDLRELFSKFGEIEKILIERKITGGSRGFGFVTFSTKDAANDA-VAMNDHVFRS 1044
Query: 199 ---------------NSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNS 243
N +S P +++ P+ A++ + + N+P +N +
Sbjct: 1045 RPLRVEIATTDTRRGNQVVISRVASHPAHYGVRELEVPVGDHAQRT-LALMNVPDTVNQA 1103
Query: 244 EFEELFARFGTITSSSLVSDKHIGFIEFIMPKHATHAVSTMNG-HVFKSKPLKV 296
L +G + + +L + +E++ A A + G + +PL +
Sbjct: 1104 RIRTLVEPYGRLVAINLRPEHQGAIVEYVDIHDAGKASLALEGKEIAPGRPLHI 1157
Score = 72.0 bits (175), Expect = 3e-10, Method: Composition-based stats.
Identities = 65/250 (26%), Positives = 122/250 (48%), Gaps = 31/250 (12%)
Query: 57 KFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQ 116
+ GT+ V++ R +++++ A+I F T EA A + +I +++ G
Sbjct: 831 QIGTVNTVKMLR-RDEKNSEVAVIEFETKEEALSALTRDQKRFNNTDNII----DVRIGA 885
Query: 117 RSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFI 176
++ V++ N T DE+ L++ F K+G +++V++ + S+ F ++
Sbjct: 886 QTT-------------VWITNYPPTADEDYLRNLFNKYGEVVDVRMPSLKFDTSRRFSYL 932
Query: 177 QFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANL 236
QF + AA A E++G M + T +S+ PG+K + P +I+V+N+
Sbjct: 933 QFDTSSAAHHAT-ELHG-MRFEDGTRLSVKISDPGQKT-ARTGPRY----EGREIYVSNI 985
Query: 237 PSNINNSEFEELFARFGTITSSSLV-----SDKHIGFIEFIMPKHATHAVSTMNGHVFKS 291
+ N + ELF++FG I + + GF+ F A AV+ MN HVF+S
Sbjct: 986 AWDANEKDLRELFSKFGEIEKILIERKITGGSRGFGFVTFSTKDAANDAVA-MNDHVFRS 1044
Query: 292 KPLKVTLSGT 301
+PL+V ++ T
Sbjct: 1045 RPLRVEIATT 1054
>gi|412986331|emb|CCO14757.1| predicted protein [Bathycoccus prasinos]
Length = 290
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/289 (23%), Positives = 128/289 (44%), Gaps = 32/289 (11%)
Query: 33 KENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKAR 92
+ N L+V N+ S + L F ++ + + + SRG+A++ F+ + A+ A
Sbjct: 7 QSNRLYVGNIPWSTTVEELQGLFTD---AENIEIPTGRQNRSRGYALVSFSDESAAQSAM 63
Query: 93 VEMNGHLIGSKPVIITFVELKP--------GQRSKPVG-----PEEKQYKKDKVFVKNLV 139
MNGH +G + + + P G PV PE ++ + +V NL
Sbjct: 64 QAMNGHALGDRNISVRADNPLPKAPKSSSRGSGGAPVQRPTNLPEAEE--GCRCYVGNLA 121
Query: 140 ETVDEEELKSHFIKFGN-IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQH 198
DE+ L H G+ ++ ++ R G+SKG+ I F S +AA+ + ++ +
Sbjct: 122 WETDEQALIEHCQTIGHPVLRCEVARQSGGRSKGWALIDFASKEAADAGVKALHDTECRA 181
Query: 199 NSTFVSLAEIVPGKKVFPKVKPPL-LQPARKN--KIFVANLPSNINNSEFEELFARFGTI 255
S V PG KPP ++P + +I V NLP + + + ++F + GT+
Sbjct: 182 RSIIVRAER--PGGAA--ATKPPREIRPENSSGLQIVVRNLPWSTTSDDLRQVFQQVGTV 237
Query: 256 TSS-SLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTL 298
+ S D K G + F + A A++ NG + +P+++ +
Sbjct: 238 VDAKSTCHDDTGRSKGWGTVLFETQEQAQAAIAGFNGVELEGRPMQIKI 286
>gi|156373168|ref|XP_001629405.1| predicted protein [Nematostella vectensis]
gi|156216405|gb|EDO37342.1| predicted protein [Nematostella vectensis]
Length = 817
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 100/191 (52%), Gaps = 19/191 (9%)
Query: 119 KPVG-PEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQ 177
KP G EE+ KVF+ NL+ ++ E+ L+ F K G +++V+IV++ G+SKG+ +++
Sbjct: 588 KPCGESEEESSDPRKVFISNLLFSITEDHLRDKFSKLGEVLDVRIVKNMAGRSKGYAYVE 647
Query: 178 FFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLL----QPARKNKIFV 233
F+ ++ +A + M+ ++ F+S K K P K+ +FV
Sbjct: 648 -FNNESTVQAALAMDREKMEGRPMFIS--------PCVDKAKNPTTFKFPTSLDKHTLFV 698
Query: 234 ANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHV 288
+NLP + SE EELF++ G + LV++ K G++E+ A+ AV T++
Sbjct: 699 SNLPFDAKESEIEELFSKHGVVKQVRLVTNRAGKPKGYGYVEYEQESSASTAVLTLDKTE 758
Query: 289 FKSKPLKVTLS 299
K + + V LS
Sbjct: 759 VKGRTISVALS 769
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 86/168 (51%), Gaps = 3/168 (1%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
++NL S+ L ++F K G + DVR+ +N S+G+A + FN + + A + M+
Sbjct: 605 ISNLLFSITEDHLRDKFSKLGEVLDVRIVKNMAGRSKGYAYVEFNNESTVQAA-LAMDRE 663
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
+ +P+ I+ K + P K +FV NL E E++ F K G +
Sbjct: 664 KMEGRPMFISPCVDKAKNPTTFKFP--TSLDKHTLFVSNLPFDAKESEIEELFSKHGVVK 721
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLA 206
+V++V + GK KG+G++++ +A A++ ++ ++ + V+L+
Sbjct: 722 QVRLVTNRAGKPKGYGYVEYEQESSASTAVLTLDKTEVKGRTISVALS 769
>gi|330928516|ref|XP_003302299.1| hypothetical protein PTT_14050 [Pyrenophora teres f. teres 0-1]
gi|311322459|gb|EFQ89618.1| hypothetical protein PTT_14050 [Pyrenophora teres f. teres 0-1]
Length = 403
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 93/190 (48%), Gaps = 36/190 (18%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRD-ENGKSKGFGFIQFFSYKAAEKAIIEM 191
+FV N+ +DE+ L+ F FG I+ +++ D E G++KGFG+++F + A KA EM
Sbjct: 219 LFVGNMSWNIDEDWLRREFEGFGEIVGCRVITDRETGRAKGFGYVEFSNAADAAKAQKEM 278
Query: 192 -----NGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNK-----------IFVAN 235
+GR Q N F + P+ KP AR NK +F+ N
Sbjct: 279 HEYELDGR--QLNVDFST-----------PRAKPDANGGARANKYGDKRSPPSNTLFLGN 325
Query: 236 LPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVF 289
+ +N +E+FA +G+IT SL +D K G+++F + AT A+ +NG
Sbjct: 326 VSFECSNESIQEVFAEYGSITRVSLPTDRDTGALKGFGYVDFSSQQEATAALEALNGQDI 385
Query: 290 KSKPLKVTLS 299
+ +++ +
Sbjct: 386 GGRAIRIDYA 395
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 89/178 (50%), Gaps = 9/178 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L V N+ ++D L EF+ FG + RV ++ ++GF + F+ A+A KA+ EM
Sbjct: 219 LFVGNMSWNIDEDWLRREFEGFGEIVGCRVITDRETGRAKGFGYVEFSNAADAAKAQKEM 278
Query: 96 NGHLIGSKPVIITFV--ELKP----GQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKS 149
+ + + + + + F KP G R+ G +++ + +F+ N+ E ++
Sbjct: 279 HEYELDGRQLNVDFSTPRAKPDANGGARANKYG-DKRSPPSNTLFLGNVSFECSNESIQE 337
Query: 150 HFIKFGNIIEVKIVRD-ENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLA 206
F ++G+I V + D + G KGFG++ F S + A A+ +NG+ I + + A
Sbjct: 338 VFAEYGSITRVSLPTDRDTGALKGFGYVDFSSQQEATAALEALNGQDIGGRAIRIDYA 395
Score = 39.7 bits (91), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 48/92 (52%), Gaps = 2/92 (2%)
Query: 21 GARSNKENNKVYK-ENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDES-RGFA 78
GAR+NK +K N L + N+ N+++ F ++G++ V + +++ + +GF
Sbjct: 304 GARANKYGDKRSPPSNTLFLGNVSFECSNESIQEVFAEYGSITRVSLPTDRDTGALKGFG 363
Query: 79 IIVFNTPAEAKKARVEMNGHLIGSKPVIITFV 110
+ F++ EA A +NG IG + + I +
Sbjct: 364 YVDFSSQQEATAALEALNGQDIGGRAIRIDYA 395
>gi|195383760|ref|XP_002050594.1| GJ22239 [Drosophila virilis]
gi|194145391|gb|EDW61787.1| GJ22239 [Drosophila virilis]
Length = 301
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 93/164 (56%), Gaps = 8/164 (4%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+++ NLE S+DN+A+ F FG + + VA+++ SRG+ + F++ A+ A ++N
Sbjct: 109 IYIKNLERSIDNKAVYETFSVFGNILNCNVAKDEEGNSRGYGFVHFDSEEAARAAIEKVN 168
Query: 97 GHLIGSKPV-IITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
G L ++ V ++ F+ + + +EK ++VKNL E E+ L+ F +G
Sbjct: 169 GMLCNNQKVHVVKFIPRRDRE-------QEKATHFKNLYVKNLSEEFTEQHLREMFEPYG 221
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHN 199
I K++ DE G+S+ FGF+ F + ++A A+I ++G+ + N
Sbjct: 222 RITSHKLMLDEEGRSRRFGFVAFENPQSAVAAVIGLHGKQLGDN 265
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 77/160 (48%), Gaps = 13/160 (8%)
Query: 132 KVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEM 191
K+++KNL ++D + + F FGNI+ + +DE G S+G+GF+ F S +AA AI ++
Sbjct: 108 KIYIKNLERSIDNKAVYETFSVFGNILNCNVAKDEEGNSRGYGFVHFDSEEAARAAIEKV 167
Query: 192 NGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFAR 251
NG + + V K P+ + ++V NL E+F
Sbjct: 168 NGMLCNNQKVHVV--------KFIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREMFEP 219
Query: 252 FGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNG 286
+G ITS L+ D + GF+ F P+ A AV ++G
Sbjct: 220 YGRITSHKLMLDEEGRSRRFGFVAFENPQSAVAAVIGLHG 259
>gi|198473023|ref|XP_002133161.1| GA28809 [Drosophila pseudoobscura pseudoobscura]
gi|198139264|gb|EDY70563.1| GA28809 [Drosophila pseudoobscura pseudoobscura]
Length = 692
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 92/181 (50%), Gaps = 25/181 (13%)
Query: 130 KDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAI 188
K + V L +T+ ++E++S F+ FG + K++RD+ G+S G+GF+ + + AEKAI
Sbjct: 118 KTNLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKAI 177
Query: 189 IEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEEL 248
+NG +Q+ + VS+A P + + ++V+ LP N+ S+ E L
Sbjct: 178 NALNGLRLQNKTIKVSIAR-------------PSSESIKGANLYVSGLPKNMTQSDLESL 224
Query: 249 FARFGTITSSSLVSD-----------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVT 297
F+ +G I +S ++ D K +GFI F A A+ +NG K+ +T
Sbjct: 225 FSPYGKIITSRILCDNITDEHAPGLSKGVGFIRFDQRFEADRAIKELNGTTPKNSTEPIT 284
Query: 298 L 298
+
Sbjct: 285 V 285
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 71/333 (21%), Positives = 130/333 (39%), Gaps = 85/333 (25%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L VN L ++ + + F FG + ++ R+K +S G+ + + +A+KA +
Sbjct: 121 LIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKAINAL 180
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
NG + +K + ++ P + K ++V L + + + +L+S F +G
Sbjct: 181 NGLRLQNKTIKVSIAR-----------PSSESIKGANLYVSGLPKNMTQSDLESLFSPYG 229
Query: 156 NIIEVKIVRDE------NGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL---- 205
II +I+ D G SKG GFI+F A++AI E+NG ++++ +++
Sbjct: 230 KIITSRILCDNITDEHAPGLSKGVGFIRFDQRFEADRAIKELNGTTPKNSTEPITVKFAN 289
Query: 206 -------------AEIVP----GKKVFPK--------------VKP-------------P 221
A I P G + FP + P P
Sbjct: 290 NPSSNKNSMQPLAAYIAPQNTRGGRAFPTNAAAGAAAAAAAAAIHPNAGRYSSVISRYSP 349
Query: 222 LLQPARKNKI-------------FVANLPSNINNSEFEELFARFGTITSSSLVSD----- 263
L N + FV NL + +LF FG + S ++ D
Sbjct: 350 LTSDLITNGMIQGNTIASSGWCIFVYNLAPETEENVLWQLFGPFGAVQSVKVIRDLQSNK 409
Query: 264 -KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLK 295
K GF+ + A A+ ++NG+ ++ L+
Sbjct: 410 CKGFGFVTMTNYEEAVLAIQSLNGYTLGNRVLQ 442
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
Query: 224 QPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDK------HIGFIEFIMPKHA 277
+P K + V LP ++ E LF FG + S L+ DK GF+ ++ + A
Sbjct: 114 EPDPKTNLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDA 173
Query: 278 THAVSTMNGHVFKSKPLKVTLS 299
A++ +NG ++K +KV+++
Sbjct: 174 EKAINALNGLRLQNKTIKVSIA 195
>gi|123456022|ref|XP_001315750.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121898436|gb|EAY03527.1| hypothetical protein TVAG_368990 [Trichomonas vaginalis G3]
Length = 330
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 77/275 (28%), Positives = 132/275 (48%), Gaps = 21/275 (7%)
Query: 30 KVY--KENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAE 87
+VY K+N +HV+NL V L + F++ G + +V + K+ +R FA + F+ P+E
Sbjct: 6 RVYEPKDNGIHVSNLPAVVSADFLRSLFQEAGNVINVVL---KHKPTRCFAFVDFSLPSE 62
Query: 88 AKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEEL 147
A+ A + N + +I+T R+ + + ++VK L TVD +L
Sbjct: 63 AQLAVQDFNYTKLNGDSIIVT--------RTTAEVLNAIKSGEANLYVKGLDTTVDSIQL 114
Query: 148 KSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
F +G +I V+ V NG +GF ++Q+ + A++A E+ I + L
Sbjct: 115 HELFSNYGEVISVR-VPILNGVPRGFAYVQYLKVEDAQRAQKELTDSTINGKEVTI-LKY 172
Query: 208 IVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNS-EFEELFARFGTITSSSLVSDKHI 266
+ + + L P KN IF+ NLP IN + LF +GT+TS+ +V +K I
Sbjct: 173 LKREDRPMSEAMQRNLDPTFKN-IFIKNLPEEINTLLKLLALFKEYGTVTSARIVPEKRI 231
Query: 267 GFIEFIMPKH--ATHAVSTMNGHVFKSKPLKVTLS 299
G++ +M +H A AV +NG + + S
Sbjct: 232 GYV--LMDEHDSAVRAVVGLNGRTIYASRVSCCRS 264
>gi|351714346|gb|EHB17265.1| Nucleolysin TIA-1 isoform p40 [Heterocephalus glaber]
Length = 386
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 77/294 (26%), Positives = 125/294 (42%), Gaps = 36/294 (12%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK--NDESRGFAIIVFNTPAEAKKARVE 94
L+V NL V ++ F + G ++ ++ + ND + + F+ A A
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP---YCFVEFHEHRHAAAALAA 65
Query: 95 MNGHLIGSKPVIITFVELKPGQR----SKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
MNG I K V + + Q+ S V ++ VFV +L + E++K+
Sbjct: 66 MNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAA 125
Query: 151 FIKFGNIIEVKIVRD-ENGKSKGFGFIQFFSYKAAEKAIIEM-----NGRMIQHN----- 199
F FG I + ++V+D GKSKG+GF+ FF+ AE AI +M GR I+ N
Sbjct: 126 FAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 185
Query: 200 -----STFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGT 254
ST+ S + + +V + P ++ + S + + F+ FG
Sbjct: 186 PPAPKSTYESNTKQLSYDEVVSQSSP------SNCTVYCGGVTSGLTEQLMRQTFSPFGQ 239
Query: 255 ITSSSLVSDKHIGFIEFIMPKHATHAV-----STMNGHVFKSKPLKVTLSGTKP 303
I + DK F+ F + A HA+ +T+ GHV K K TL P
Sbjct: 240 IMEIRVFPDKGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDMINP 293
>gi|195029531|ref|XP_001987626.1| GH22019 [Drosophila grimshawi]
gi|193903626|gb|EDW02493.1| GH22019 [Drosophila grimshawi]
Length = 304
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 93/164 (56%), Gaps = 8/164 (4%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+++ NLE S+DN+A+ F FG + + VA+++ SRG+ + F++ A+ A ++N
Sbjct: 112 IYIKNLERSIDNKAVYETFSVFGNILNCNVAKDEEGNSRGYGFVHFDSEEAARAAIEKVN 171
Query: 97 GHLIGSKPV-IITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
G L ++ V ++ F+ + + +EK ++VKNL E E+ L+ F +G
Sbjct: 172 GMLCNNQKVHVVKFIPRRDRE-------QEKATHFKNLYVKNLSEEFTEQHLREMFEPYG 224
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHN 199
I K++ DE G+S+ FGF+ F + ++A A+I ++G+ + N
Sbjct: 225 RITSHKLMLDEEGRSRRFGFVAFENPQSALAAVIGLHGKQLGDN 268
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 77/160 (48%), Gaps = 13/160 (8%)
Query: 132 KVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEM 191
K+++KNL ++D + + F FGNI+ + +DE G S+G+GF+ F S +AA AI ++
Sbjct: 111 KIYIKNLERSIDNKAVYETFSVFGNILNCNVAKDEEGNSRGYGFVHFDSEEAARAAIEKV 170
Query: 192 NGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFAR 251
NG + + V K P+ + ++V NL E+F
Sbjct: 171 NGMLCNNQKVHVV--------KFIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREMFEP 222
Query: 252 FGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNG 286
+G ITS L+ D + GF+ F P+ A AV ++G
Sbjct: 223 YGRITSHKLMLDEEGRSRRFGFVAFENPQSALAAVIGLHG 262
>gi|354491613|ref|XP_003507949.1| PREDICTED: ELAV-like protein 2 isoform 2 [Cricetulus griseus]
Length = 360
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 86/177 (48%), Gaps = 20/177 (11%)
Query: 118 SKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFI 176
S PV + + K + V L + + +EELKS F G I K+VRD+ G+S G+GF+
Sbjct: 26 SSPVDSGKTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFV 85
Query: 177 QFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANL 236
+ K AEKAI +NG +Q + VS A P R ++V+ L
Sbjct: 86 NYIDPKDAEKAINTLNGLRLQTKTIKVSYAR-------------PSSASIRDANLYVSGL 132
Query: 237 PSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGH 287
P + E E+LF+++G I +S ++ D + +GFI F A A+ +NG
Sbjct: 133 PKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 189
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 82/160 (51%), Gaps = 13/160 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L VN L ++ + L + F G + ++ R+K +S G+ + + P +A+KA +
Sbjct: 41 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 100
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
NG + +K + +++ P + ++V L +T+ ++EL+ F ++G
Sbjct: 101 NGLRLQTKTIKVSYAR-----------PSSASIRDANLYVSGLPKTMTQKELEQLFSQYG 149
Query: 156 NIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEMNGR 194
II +I+ D+ G S+G GFI+F AE+AI +NG+
Sbjct: 150 RIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 189
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/219 (22%), Positives = 86/219 (39%), Gaps = 59/219 (26%)
Query: 33 KENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKA 91
++ L+V+ L ++ + L F ++G + R+ ++ SRG I F+ EA++A
Sbjct: 123 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEA 182
Query: 92 RVEMNGHLI--GSKPVIITFVELKPGQRSK-----------------PVGPEEKQYKKDK 132
+NG ++P+ + F P Q++ P+ + ++++ D
Sbjct: 183 IKGLNGQKPPGATEPITVKFAN-NPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRFRLDN 241
Query: 133 -------------------------------------VFVKNLVETVDEEELKSHFIKFG 155
+FV NL DE L F FG
Sbjct: 242 LLNMAYGVKSRFSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAPDADESILWQMFGPFG 301
Query: 156 NIIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAIIEMNG 193
+ VK++RD N K KGFGF+ +Y A AI +NG
Sbjct: 302 AVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 340
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 228 KNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDK------HIGFIEFIMPKHATHAV 281
K + V LP N+ E + LF G I S LV DK GF+ +I PK A A+
Sbjct: 38 KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 97
Query: 282 STMNGHVFKSKPLKVTLS 299
+T+NG ++K +KV+ +
Sbjct: 98 NTLNGLRLQTKTIKVSYA 115
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKN-DESRGFAIIVFNTPAEAKKARVEM 95
+ V NL P D L F FG + +V+V R+ N ++ +GF + EA A +
Sbjct: 279 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 338
Query: 96 NGHLIGSKPVIITF 109
NG+ +G + + ++F
Sbjct: 339 NGYRLGDRVLQVSF 352
>gi|354491611|ref|XP_003507948.1| PREDICTED: ELAV-like protein 2 isoform 1 [Cricetulus griseus]
Length = 359
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 86/177 (48%), Gaps = 20/177 (11%)
Query: 118 SKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFI 176
S PV + + K + V L + + +EELKS F G I K+VRD+ G+S G+GF+
Sbjct: 26 SSPVDSGKTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFV 85
Query: 177 QFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANL 236
+ K AEKAI +NG +Q + VS A P R ++V+ L
Sbjct: 86 NYIDPKDAEKAINTLNGLRLQTKTIKVSYAR-------------PSSASIRDANLYVSGL 132
Query: 237 PSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGH 287
P + E E+LF+++G I +S ++ D + +GFI F A A+ +NG
Sbjct: 133 PKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 189
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 82/160 (51%), Gaps = 13/160 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L VN L ++ + L + F G + ++ R+K +S G+ + + P +A+KA +
Sbjct: 41 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 100
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
NG + +K + +++ P + ++V L +T+ ++EL+ F ++G
Sbjct: 101 NGLRLQTKTIKVSYAR-----------PSSASIRDANLYVSGLPKTMTQKELEQLFSQYG 149
Query: 156 NIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEMNGR 194
II +I+ D+ G S+G GFI+F AE+AI +NG+
Sbjct: 150 RIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 189
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 86/218 (39%), Gaps = 58/218 (26%)
Query: 33 KENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKA 91
++ L+V+ L ++ + L F ++G + R+ ++ SRG I F+ EA++A
Sbjct: 123 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEA 182
Query: 92 RVEMNGHLI--GSKPVIITFVELKPGQRSK-----------------PVGPEEKQYKKDK 132
+NG ++P+ + F P Q++ P+ + ++++ D
Sbjct: 183 IKGLNGQKPPGATEPITVKFAN-NPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRFRLDN 241
Query: 133 ------------------------------------VFVKNLVETVDEEELKSHFIKFGN 156
+FV NL DE L F FG
Sbjct: 242 LLNMAYGVKRFSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAPDADESILWQMFGPFGA 301
Query: 157 IIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAIIEMNG 193
+ VK++RD N K KGFGF+ +Y A AI +NG
Sbjct: 302 VTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 339
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 228 KNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDK------HIGFIEFIMPKHATHAV 281
K + V LP N+ E + LF G I S LV DK GF+ +I PK A A+
Sbjct: 38 KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 97
Query: 282 STMNGHVFKSKPLKVTLS 299
+T+NG ++K +KV+ +
Sbjct: 98 NTLNGLRLQTKTIKVSYA 115
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKN-DESRGFAIIVFNTPAEAKKARVEM 95
+ V NL P D L F FG + +V+V R+ N ++ +GF + EA A +
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 96 NGHLIGSKPVIITF 109
NG+ +G + + ++F
Sbjct: 338 NGYRLGDRVLQVSF 351
>gi|195573327|ref|XP_002104645.1| GD18328 [Drosophila simulans]
gi|194200572|gb|EDX14148.1| GD18328 [Drosophila simulans]
Length = 824
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 68/261 (26%), Positives = 111/261 (42%), Gaps = 33/261 (12%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L+V NL+ SV LI F G ++ ++ R ++ +A I ++ A A MN
Sbjct: 9 LYVGNLDSSVSEDLLIALFSTMGPVKSCKIIREPGNDP--YAFIEYSNYQAASTALTAMN 66
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
L K + + + PG + P+ +FV +L ++ E L+ F FG
Sbjct: 67 KRLFLEKEIKVNWAT-SPGNQ-----PKTDISSHHHIFVGDLSPEIETETLREAFAPFGE 120
Query: 157 IIEVKIVRDENG-KSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
I +IVRD + KSKG+ F+ F AE AI MNG+ I S + +
Sbjct: 121 ISNCRIVRDPHTMKSKGYAFVSFVKKAEAENAIQAMNGQWIGSRSIRTNWST-------- 172
Query: 216 PKVKPPLLQPARK--------------NKIFVANLPSN-INNSEFEELFARFGTITSSSL 260
+ PP +P++ ++ P N I++ + F +FG I +
Sbjct: 173 -RKLPPPREPSKXXXXXEVYNQSSPTNTTVYCGGFPPNVISDDLMHKHFVQFGPIQDVRV 231
Query: 261 VSDKHIGFIEFIMPKHATHAV 281
DK FI+F+ + A HA+
Sbjct: 232 FKDKGFSFIKFVTKEAAAHAI 252
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 84/173 (48%), Gaps = 14/173 (8%)
Query: 25 NKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKND-ESRGFAIIVFN 83
N+ + + + V +L P ++ + L F FG + + R+ R+ + +S+G+A + F
Sbjct: 85 NQPKTDISSHHHIFVGDLSPEIETETLREAFAPFGEISNCRIVRDPHTMKSKGYAFVSFV 144
Query: 84 TPAEAKKARVEMNGHLIGSKPVIITFVELK---PGQRSKPVGPEEKQYKKD----KVFVK 136
AEA+ A MNG IGS+ + + K P + SK E + V+
Sbjct: 145 KKAEAENAIQAMNGQWIGSRSIRTNWSTRKLPPPREPSKXXXXXEVYNQSSPTNTTVYCG 204
Query: 137 NLVETVDEEEL-KSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAI 188
V ++L HF++FG I +V++ +D KGF FI+F + +AA AI
Sbjct: 205 GFPPNVISDDLMHKHFVQFGPIQDVRVFKD-----KGFSFIKFVTKEAAAHAI 252
>gi|348041233|ref|NP_775431.2| ELAV-like protein 2 [Rattus norvegicus]
gi|149044491|gb|EDL97750.1| rCG53485, isoform CRA_b [Rattus norvegicus]
Length = 388
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 85/177 (48%), Gaps = 20/177 (11%)
Query: 118 SKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFI 176
S PV + K + V L + + +EELKS F G I K+VRD+ G+S G+GF+
Sbjct: 55 SSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFV 114
Query: 177 QFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANL 236
+ K AEKAI +NG +Q + VS A P R ++V+ L
Sbjct: 115 NYIDPKDAEKAINTLNGLRLQTKTIKVSYAR-------------PSSASIRDANLYVSGL 161
Query: 237 PSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGH 287
P + E E+LF+++G I +S ++ D + +GFI F A A+ +NG
Sbjct: 162 PKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 218
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 87/172 (50%), Gaps = 17/172 (9%)
Query: 25 NKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFN 83
N E++K L VN L ++ + L + F G + ++ R+K +S G+ + +
Sbjct: 62 NTEDSKT----NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYI 117
Query: 84 TPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVD 143
P +A+KA +NG + +K + +++ P + ++V L +T+
Sbjct: 118 DPKDAEKAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDANLYVSGLPKTMT 166
Query: 144 EEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEMNGR 194
++EL+ F ++G II +I+ D+ G S+G GFI+F AE+AI +NG+
Sbjct: 167 QKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 218
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 86/218 (39%), Gaps = 58/218 (26%)
Query: 33 KENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKA 91
++ L+V+ L ++ + L F ++G + R+ ++ SRG I F+ EA++A
Sbjct: 152 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEA 211
Query: 92 RVEMNGHLI--GSKPVIITFVELKPGQRSK-----------------PVGPEEKQYKKDK 132
+NG ++P+ + F P Q++ P+ + ++++ D
Sbjct: 212 IKGLNGQKPPGATEPITVKFAN-NPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRFRLDN 270
Query: 133 ------------------------------------VFVKNLVETVDEEELKSHFIKFGN 156
+FV NL DE L F FG
Sbjct: 271 LLNMAYGVKRFSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAPDADESILWQMFGPFGA 330
Query: 157 IIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAIIEMNG 193
+ VK++RD N K KGFGF+ +Y A AI +NG
Sbjct: 331 VTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 368
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 228 KNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDK------HIGFIEFIMPKHATHAV 281
K + V LP N+ E + LF G I S LV DK GF+ +I PK A A+
Sbjct: 67 KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 126
Query: 282 STMNGHVFKSKPLKVTLS 299
+T+NG ++K +KV+ +
Sbjct: 127 NTLNGLRLQTKTIKVSYA 144
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKN-DESRGFAIIVFNTPAEAKKARVEM 95
+ V NL P D L F FG + +V+V R+ N ++ +GF + EA A +
Sbjct: 307 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 366
Query: 96 NGHLIGSKPVIITF 109
NG+ +G + + ++F
Sbjct: 367 NGYRLGDRVLQVSF 380
>gi|344248615|gb|EGW04719.1| ELAV-like protein 2 [Cricetulus griseus]
Length = 347
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 86/177 (48%), Gaps = 20/177 (11%)
Query: 118 SKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFI 176
S PV + + K + V L + + +EELKS F G I K+VRD+ G+S G+GF+
Sbjct: 26 SSPVDSGKTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFV 85
Query: 177 QFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANL 236
+ K AEKAI +NG +Q + VS A P R ++V+ L
Sbjct: 86 NYIDPKDAEKAINTLNGLRLQTKTIKVSYAR-------------PSSASIRDANLYVSGL 132
Query: 237 PSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGH 287
P + E E+LF+++G I +S ++ D + +GFI F A A+ +NG
Sbjct: 133 PKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 189
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 69/310 (22%), Positives = 131/310 (42%), Gaps = 59/310 (19%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L VN L ++ + L + F G + ++ R+K +S G+ + + P +A+KA +
Sbjct: 41 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 100
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
NG + +K + +++ P + ++V L +T+ ++EL+ F ++G
Sbjct: 101 NGLRLQTKTIKVSYAR-----------PSSASIRDANLYVSGLPKTMTQKELEQLFSQYG 149
Query: 156 NIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEMNGR-----------------MIQ 197
II +I+ D+ G S+G GFI+F AE+AI +NG+ +
Sbjct: 150 RIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQK 209
Query: 198 HNSTFVSLAEIVPGKKV----------FPKVKPPLL-------------QPARKNKIFVA 234
N +S P ++ F + P + P IFV
Sbjct: 210 TNQAILSQLYQSPNRRYPGPLAQQAQRFSRFSPMTIDGMTSLAGINIPGHPGTGWCIFVY 269
Query: 235 NLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHV 288
NL + + S ++F FG +T+ ++ D K GF+ A A++++NG+
Sbjct: 270 NLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYR 329
Query: 289 FKSKPLKVTL 298
+ L+V+
Sbjct: 330 LGDRVLQVSF 339
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 228 KNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDK------HIGFIEFIMPKHATHAV 281
K + V LP N+ E + LF G I S LV DK GF+ +I PK A A+
Sbjct: 38 KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 97
Query: 282 STMNGHVFKSKPLKVTLS 299
+T+NG ++K +KV+ +
Sbjct: 98 NTLNGLRLQTKTIKVSYA 115
>gi|354491615|ref|XP_003507950.1| PREDICTED: ELAV-like protein 2 isoform 3 [Cricetulus griseus]
Length = 356
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 86/177 (48%), Gaps = 20/177 (11%)
Query: 118 SKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFI 176
S PV + + K + V L + + +EELKS F G I K+VRD+ G+S G+GF+
Sbjct: 36 SSPVDSGKTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFV 95
Query: 177 QFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANL 236
+ K AEKAI +NG +Q + VS A P R ++V+ L
Sbjct: 96 NYIDPKDAEKAINTLNGLRLQTKTIKVSYAR-------------PSSASIRDANLYVSGL 142
Query: 237 PSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGH 287
P + E E+LF+++G I +S ++ D + +GFI F A A+ +NG
Sbjct: 143 PKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 199
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 72/317 (22%), Positives = 136/317 (42%), Gaps = 66/317 (20%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L VN L ++ + L + F G + ++ R+K +S G+ + + P +A+KA +
Sbjct: 51 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 110
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
NG + +K + +++ P + ++V L +T+ ++EL+ F ++G
Sbjct: 111 NGLRLQTKTIKVSYAR-----------PSSASIRDANLYVSGLPKTMTQKELEQLFSQYG 159
Query: 156 NIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEMNGR-----------------MIQ 197
II +I+ D+ G S+G GFI+F AE+AI +NG+ +
Sbjct: 160 RIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQK 219
Query: 198 HNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNK--------------------------I 231
N +S P ++ +P PL Q A++ + I
Sbjct: 220 TNQAILSQLYQSPNRR-YPG---PLAQQAQRFRFSPMTIDGMTSLAGINIPGHPGTGWCI 275
Query: 232 FVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMN 285
FV NL + + S ++F FG +T+ ++ D K GF+ A A++++N
Sbjct: 276 FVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLN 335
Query: 286 GHVFKSKPLKVTLSGTK 302
G+ + L+V+ K
Sbjct: 336 GYRLGDRVLQVSFKTNK 352
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 228 KNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDK------HIGFIEFIMPKHATHAV 281
K + V LP N+ E + LF G I S LV DK GF+ +I PK A A+
Sbjct: 48 KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 107
Query: 282 STMNGHVFKSKPLKVTLS 299
+T+NG ++K +KV+ +
Sbjct: 108 NTLNGLRLQTKTIKVSYA 125
>gi|38141765|dbj|BAD00701.1| TIA-1 homologue [Bombyx mori]
Length = 388
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 72/275 (26%), Positives = 115/275 (41%), Gaps = 28/275 (10%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L+V NL+PSV L F + G ++ ++ R ++ +A + F A A MN
Sbjct: 10 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP--YAFLEFTCHTAAVTALAAMN 67
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
++ K + + + PG + P+ +FV +L ++ L+ F FG
Sbjct: 68 KRVVLDKEMKVNWA-TSPGNQ-----PKTDTSNHHHIFVGDLSPEIETNILREAFAPFGE 121
Query: 157 IIEVKIVRD-ENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVP----- 210
I +IVRD + KSKG+ F+ F AE AI MNG+ + S + + P
Sbjct: 122 ISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGV 181
Query: 211 --GKKVFPKVKPPLL-----QPARKN-KIFVANLPSNINNSEF-EELFARFGTITSSSLV 261
G + K P Q + N ++ SNI E + F++FG I +
Sbjct: 182 NEGAPSSKRAKQPTFDEVYNQSSPTNTTVYCGGFTSNIITEELMQNTFSQFGQIQDIRVF 241
Query: 262 SDKHIGFIEFIMPKHATHAVST-----MNGHVFKS 291
DK FI F + A HA+ ++GH K
Sbjct: 242 RDKGYAFIRFTTKEAAAHAIGATHNTEISGHTVKC 276
Score = 70.9 bits (172), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 90/202 (44%), Gaps = 19/202 (9%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMN 192
++V NL +V E L + F + G++ KI+R+ + F++F + AA A+ MN
Sbjct: 10 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP--YAFLEFTCHTAAVTALAAMN 67
Query: 193 GRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARF 252
R++ V+ A PG + P + + IFV +L I + E FA F
Sbjct: 68 KRVVLDKEMKVNWA-TSPGNQ-------PKTDTSNHHHIFVGDLSPEIETNILREAFAPF 119
Query: 253 GTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKP--- 303
G I++ +V D K F+ F+ A A+ MNG S+ ++ S KP
Sbjct: 120 GEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAK 179
Query: 304 GVSITNPTKAPKKPAYIDEVKN 325
GV+ P+ K DEV N
Sbjct: 180 GVNEGAPSSKRAKQPTFDEVYN 201
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 84/181 (46%), Gaps = 22/181 (12%)
Query: 25 NKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKND-ESRGFAIIVFN 83
N+ + + V +L P ++ L F FG + + R+ R+ +S+G+A + F
Sbjct: 86 NQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFV 145
Query: 84 TPAEAKKARVEMNGHLIGSKPVIITFVELKPGQR----SKPVGPEEKQYKKDKVFVKN-- 137
A+A+ A MNG +GS+ + + KP + P KQ D+V+ ++
Sbjct: 146 KKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEGAPSSKRAKQPTFDEVYNQSSP 205
Query: 138 ----------LVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKA 187
+ EE +++ F +FG I ++++ RD KG+ FI+F + +AA A
Sbjct: 206 TNTTVYCGGFTSNIITEELMQNTFSQFGQIQDIRVFRD-----KGYAFIRFTTKEAAAHA 260
Query: 188 I 188
I
Sbjct: 261 I 261
>gi|147902038|ref|NP_001087561.1| TIA1 cytotoxic granule-associated RNA binding protein [Xenopus
laevis]
gi|51261513|gb|AAH80105.1| MGC84540 protein [Xenopus laevis]
Length = 389
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 77/310 (24%), Positives = 130/310 (41%), Gaps = 36/310 (11%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK--NDESRGFAIIVFNTPAEAKKARVE 94
L+V NL V ++ F + G + ++ + ND + + F A +
Sbjct: 9 LYVGNLSRDVTEPLILQVFSQLGPCKSCKMIMDTAGNDP---YCFVEFFEHRHAAASLAA 65
Query: 95 MNGHLIGSKPVIITFVELKPGQR----SKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
+NG I K V + + Q+ S V + VFV +L + +++K+
Sbjct: 66 INGRKIMGKEVKVNWATTPSSQKKDANSSSVVSTLRSQDHFHVFVGDLSPEITTDDIKAA 125
Query: 151 FIKFGNIIEVKIVRD-ENGKSKGFGFIQFFSYKAAEKAIIEM-----NGRMIQHN----- 199
F FG I + ++V+D GKSKG+GF+ FF+ AE AI +M GR I+ N
Sbjct: 126 FAPFGRISDARVVKDMTTGKSKGYGFVSFFNKWDAENAIAQMGGQWLGGRQIRTNWATRK 185
Query: 200 -----STFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGT 254
ST+ S A+ + ++V + P ++ + S + + F+ FG
Sbjct: 186 PPAPKSTYESNAKQLTYEEVVNQSSP------SNCTVYCGGVTSGLTEQLMRQTFSPFGQ 239
Query: 255 ITSSSLVSDKHIGFIEFIMPKHATHAV-----STMNGHVFKSKPLKVTLSGTKPGVSITN 309
I + DK F+ F + A HA+ +T+ GHV K K T P ++
Sbjct: 240 IMEVRVFPDKGYSFVRFSSHESAAHAIVSVNGTTIEGHVVKCYWGKETPDMLNPVQQVSE 299
Query: 310 PTKAPKKPAY 319
P++ P Y
Sbjct: 300 PSQISFPPPY 309
>gi|432103090|gb|ELK30412.1| ELAV-like protein 2 [Myotis davidii]
Length = 416
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 85/177 (48%), Gaps = 20/177 (11%)
Query: 118 SKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFI 176
S PV + K + V L + + +EELKS F G I K+VRD+ G+S G+GF+
Sbjct: 83 SSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFV 142
Query: 177 QFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANL 236
+ K AEKAI +NG +Q + VS A P R ++V+ L
Sbjct: 143 NYIDPKDAEKAINTLNGLRLQTKTIKVSYAR-------------PSSASIRDANLYVSGL 189
Query: 237 PSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGH 287
P + E E+LF+++G I +S ++ D + +GFI F A A+ +NG
Sbjct: 190 PKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 246
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 87/172 (50%), Gaps = 17/172 (9%)
Query: 25 NKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFN 83
N E++K L VN L ++ + L + F G + ++ R+K +S G+ + +
Sbjct: 90 NTEDSKT----NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYI 145
Query: 84 TPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVD 143
P +A+KA +NG + +K + +++ P + ++V L +T+
Sbjct: 146 DPKDAEKAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDANLYVSGLPKTMT 194
Query: 144 EEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEMNGR 194
++EL+ F ++G II +I+ D+ G S+G GFI+F AE+AI +NG+
Sbjct: 195 QKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 246
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 86/218 (39%), Gaps = 58/218 (26%)
Query: 33 KENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKA 91
++ L+V+ L ++ + L F ++G + R+ ++ SRG I F+ EA++A
Sbjct: 180 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEA 239
Query: 92 RVEMNGHLI--GSKPVIITFVELKPGQRSK-----------------PVGPEEKQYKKDK 132
+NG ++P+ + F P Q++ P+ + ++++ D
Sbjct: 240 IKGLNGQKPPGATEPITVKFAN-NPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRFRLDN 298
Query: 133 ------------------------------------VFVKNLVETVDEEELKSHFIKFGN 156
+FV NL DE L F FG
Sbjct: 299 LLNMAYGVKRFSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAPDADESILWQMFGPFGA 358
Query: 157 IIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAIIEMNG 193
+ VK++RD N K KGFGF+ +Y A AI +NG
Sbjct: 359 VTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 396
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 228 KNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDK------HIGFIEFIMPKHATHAV 281
K + V LP N+ E + LF G I S LV DK GF+ +I PK A A+
Sbjct: 95 KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 154
Query: 282 STMNGHVFKSKPLKVTLS 299
+T+NG ++K +KV+ +
Sbjct: 155 NTLNGLRLQTKTIKVSYA 172
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKN-DESRGFAIIVFNTPAEAKKARVEM 95
+ V NL P D L F FG + +V+V R+ N ++ +GF + EA A +
Sbjct: 335 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 394
Query: 96 NGHLIGSKPVIITF 109
NG+ +G + + ++F
Sbjct: 395 NGYRLGDRVLQVSF 408
>gi|281349018|gb|EFB24602.1| hypothetical protein PANDA_005072 [Ailuropoda melanoleuca]
gi|351703220|gb|EHB06139.1| ELAV-like protein 2 [Heterocephalus glaber]
gi|355567720|gb|EHH24061.1| Hu-antigen B [Macaca mulatta]
gi|355753294|gb|EHH57340.1| Hu-antigen B [Macaca fascicularis]
gi|431914785|gb|ELK15810.1| ELAV-like protein 2 [Pteropus alecto]
Length = 387
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 85/177 (48%), Gaps = 20/177 (11%)
Query: 118 SKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFI 176
S PV + K + V L + + +EELKS F G I K+VRD+ G+S G+GF+
Sbjct: 54 SSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFV 113
Query: 177 QFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANL 236
+ K AEKAI +NG +Q + VS A P R ++V+ L
Sbjct: 114 NYIDPKDAEKAINTLNGLRLQTKTIKVSYAR-------------PSSASIRDANLYVSGL 160
Query: 237 PSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGH 287
P + E E+LF+++G I +S ++ D + +GFI F A A+ +NG
Sbjct: 161 PKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 217
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 87/172 (50%), Gaps = 17/172 (9%)
Query: 25 NKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFN 83
N E++K L VN L ++ + L + F G + ++ R+K +S G+ + +
Sbjct: 61 NTEDSKT----NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYI 116
Query: 84 TPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVD 143
P +A+KA +NG + +K + +++ P + ++V L +T+
Sbjct: 117 DPKDAEKAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDANLYVSGLPKTMT 165
Query: 144 EEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEMNGR 194
++EL+ F ++G II +I+ D+ G S+G GFI+F AE+AI +NG+
Sbjct: 166 QKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 217
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 86/218 (39%), Gaps = 58/218 (26%)
Query: 33 KENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKA 91
++ L+V+ L ++ + L F ++G + R+ ++ SRG I F+ EA++A
Sbjct: 151 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEA 210
Query: 92 RVEMNGHLI--GSKPVIITFVELKPGQRSK-----------------PVGPEEKQYKKDK 132
+NG ++P+ + F P Q++ P+ + ++++ D
Sbjct: 211 IKGLNGQKPPGATEPITVKFAN-NPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRFRLDN 269
Query: 133 ------------------------------------VFVKNLVETVDEEELKSHFIKFGN 156
+FV NL DE L F FG
Sbjct: 270 LLNMAYGVKRFSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAPDADESILWQMFGPFGA 329
Query: 157 IIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAIIEMNG 193
+ VK++RD N K KGFGF+ +Y A AI +NG
Sbjct: 330 VTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 367
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 228 KNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDK------HIGFIEFIMPKHATHAV 281
K + V LP N+ E + LF G I S LV DK GF+ +I PK A A+
Sbjct: 66 KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 125
Query: 282 STMNGHVFKSKPLKVTLS 299
+T+NG ++K +KV+ +
Sbjct: 126 NTLNGLRLQTKTIKVSYA 143
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKN-DESRGFAIIVFNTPAEAKKARVEM 95
+ V NL P D L F FG + +V+V R+ N ++ +GF + EA A +
Sbjct: 306 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 365
Query: 96 NGHLIGSKPVIITF 109
NG+ +G + + ++F
Sbjct: 366 NGYRLGDRVLQVSF 379
>gi|145501335|ref|XP_001436649.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124403791|emb|CAK69252.1| unnamed protein product [Paramecium tetraurelia]
Length = 620
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 114/216 (52%), Gaps = 26/216 (12%)
Query: 34 ENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKN-DESRGFAIIVFNTPAEAKKAR 92
+N LHV++LE + + L EF+KFG + V++ R +S+ +A I F++ EA+KA+
Sbjct: 54 QNGLHVSDLEEGITEEQLYVEFRKFGQISFVKLHRYPFIGKSKHYAFIYFSSQEEARKAK 113
Query: 93 VEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKD-KVFVKNLVETVDEEELKSHF 151
MN + +P+ IT+++ +Y+KD +F TV ++L+ F
Sbjct: 114 EAMNYKQLLREPMRITYIQ---------------EYEKDANLFFAGFELTVTLKQLEEFF 158
Query: 152 IKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIE-MNGRMIQHNSTFVSLAEIVP 210
+K+G ++ VK+ DEN KS+G+G++QF + A + + E +G ++ + +T + + V
Sbjct: 159 LKWGQVVSVKLSTDENKKSRGYGWVQFEKKEQANELLAESTDGTIVYNENTKIIIKRFVK 218
Query: 211 GKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFE 246
K + ++N +++ N ++N + E
Sbjct: 219 --------KGQTDREDKRNNLYIKNFWPTLDNYDLE 246
Score = 45.8 bits (107), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 67/154 (43%), Gaps = 22/154 (14%)
Query: 135 VKNLVETVDEEELKSHFIKFGNIIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAIIEMNG 193
V +L E + EE+L F KFG I VK+ R GKSK + FI F S + A KA MN
Sbjct: 59 VSDLEEGITEEQLYVEFRKFGQISFVKLHRYPFIGKSKHYAFIYFSSQEEARKAKEAMNY 118
Query: 194 RMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFG 253
+ + ++ + + + +F A + + EE F ++G
Sbjct: 119 KQLLREPMRITYIQ----------------EYEKDANLFFAGFELTVTLKQLEEFFLKWG 162
Query: 254 TITSSSLVSDKH-----IGFIEFIMPKHATHAVS 282
+ S L +D++ G+++F + A ++
Sbjct: 163 QVVSVKLSTDENKKSRGYGWVQFEKKEQANELLA 196
Score = 38.5 bits (88), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 84/180 (46%), Gaps = 31/180 (17%)
Query: 33 KENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKAR 92
K+ L E +V + L F K+G + V+++ ++N +SRG+ + F +A +
Sbjct: 136 KDANLFFAGFELTVTLKQLEEFFLKWGQVVSVKLSTDENKKSRGYGWVQFEKKEQANELL 195
Query: 93 VE-MNGHLI---GSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVD----- 143
E +G ++ +K +I FV K GQ +++ K++ +++KN T+D
Sbjct: 196 AESTDGTIVYNENTKIIIKRFV--KKGQ-------TDREDKRNNLYIKNFWPTLDNYDLE 246
Query: 144 ------------EEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEM 191
E+L F +G I+ + +V+ + + F F+ F ++ A++A E+
Sbjct: 247 NAEVRESLEKEMREKLNEWFKGYGQIVSI-LVKIDVERKAPFAFVSFNRHQDAKEAQREL 305
>gi|207080284|ref|NP_001128867.1| DKFZP459N111 protein [Pongo abelii]
gi|390458025|ref|XP_003732040.1| PREDICTED: ELAV-like protein 2 [Callithrix jacchus]
gi|402897269|ref|XP_003911691.1| PREDICTED: ELAV-like protein 2 isoform 5 [Papio anubis]
gi|403272644|ref|XP_003928162.1| PREDICTED: ELAV-like protein 2 isoform 4 [Saimiri boliviensis
boliviensis]
gi|426361469|ref|XP_004047933.1| PREDICTED: ELAV-like protein 2 isoform 5 [Gorilla gorilla gorilla]
gi|55731642|emb|CAH92527.1| hypothetical protein [Pongo abelii]
Length = 389
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 85/177 (48%), Gaps = 20/177 (11%)
Query: 118 SKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFI 176
S PV + K + V L + + +EELKS F G I K+VRD+ G+S G+GF+
Sbjct: 55 SSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFV 114
Query: 177 QFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANL 236
+ K AEKAI +NG +Q + VS A P R ++V+ L
Sbjct: 115 NYIDPKDAEKAINTLNGLRLQTKTIKVSYAR-------------PSSASIRDANLYVSGL 161
Query: 237 PSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGH 287
P + E E+LF+++G I +S ++ D + +GFI F A A+ +NG
Sbjct: 162 PKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 218
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 87/172 (50%), Gaps = 17/172 (9%)
Query: 25 NKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFN 83
N E++K L VN L ++ + L + F G + ++ R+K +S G+ + +
Sbjct: 62 NTEDSKT----NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYI 117
Query: 84 TPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVD 143
P +A+KA +NG + +K + +++ P + ++V L +T+
Sbjct: 118 DPKDAEKAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDANLYVSGLPKTMT 166
Query: 144 EEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEMNGR 194
++EL+ F ++G II +I+ D+ G S+G GFI+F AE+AI +NG+
Sbjct: 167 QKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 218
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/219 (22%), Positives = 86/219 (39%), Gaps = 59/219 (26%)
Query: 33 KENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKA 91
++ L+V+ L ++ + L F ++G + R+ ++ SRG I F+ EA++A
Sbjct: 152 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEA 211
Query: 92 RVEMNGHLI--GSKPVIITFVELKPGQRSK-----------------PVGPEEKQYKKDK 132
+NG ++P+ + F P Q++ P+ + ++++ D
Sbjct: 212 IKGLNGQKPPGATEPITVKFAN-NPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRFRLDN 270
Query: 133 -------------------------------------VFVKNLVETVDEEELKSHFIKFG 155
+FV NL DE L F FG
Sbjct: 271 LLNMAYGVKSRFSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAPDADESILWQMFGPFG 330
Query: 156 NIIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAIIEMNG 193
+ VK++RD N K KGFGF+ +Y A AI +NG
Sbjct: 331 AVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 369
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 228 KNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDK------HIGFIEFIMPKHATHAV 281
K + V LP N+ E + LF G I S LV DK GF+ +I PK A A+
Sbjct: 67 KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 126
Query: 282 STMNGHVFKSKPLKVTLS 299
+T+NG ++K +KV+ +
Sbjct: 127 NTLNGLRLQTKTIKVSYA 144
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKN-DESRGFAIIVFNTPAEAKKARVEM 95
+ V NL P D L F FG + +V+V R+ N ++ +GF + EA A +
Sbjct: 308 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 367
Query: 96 NGHLIGSKPVIITF 109
NG+ +G + + ++F
Sbjct: 368 NGYRLGDRVLQVSF 381
>gi|296484904|tpg|DAA27019.1| TPA: ELAV-like 2-like [Bos taurus]
Length = 620
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 85/177 (48%), Gaps = 20/177 (11%)
Query: 118 SKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFI 176
S PV + K + V L + + +EELKS F G I K+VRD+ G+S G+GF+
Sbjct: 300 SSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFV 359
Query: 177 QFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANL 236
+ K AEKAI +NG +Q + VS A P R ++V+ L
Sbjct: 360 NYIDPKDAEKAINTLNGLRLQTKTIKVSYAR-------------PSSASIRDANLYVSGL 406
Query: 237 PSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGH 287
P + E E+LF+++G I +S ++ D + +GFI F A A+ +NG
Sbjct: 407 PKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 463
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 73/325 (22%), Positives = 139/325 (42%), Gaps = 70/325 (21%)
Query: 25 NKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFN 83
N E++K L VN L ++ + L + F G + ++ R+K +S G+ + +
Sbjct: 307 NTEDSKT----NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYI 362
Query: 84 TPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVD 143
P +A+KA +NG + +K + +++ P + ++V L +T+
Sbjct: 363 DPKDAEKAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDANLYVSGLPKTMT 411
Query: 144 EEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEMNGR-------- 194
++EL+ F ++G II +I+ D+ G S+G GFI+F AE+AI +NG+
Sbjct: 412 QKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEP 471
Query: 195 ---------MIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNK--------------- 230
+ N +S P ++ +P PL Q A++ +
Sbjct: 472 ITVKFANNPSQKTNQAILSQLYQSPNRR-YPG---PLAQQAQRFRFSPMTIDGMTSLAGI 527
Query: 231 -----------IFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIM 273
IFV NL + + S ++F FG +T+ ++ D K GF+
Sbjct: 528 NIPGHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTN 587
Query: 274 PKHATHAVSTMNGHVFKSKPLKVTL 298
A A++++NG+ + L+ +
Sbjct: 588 YDEAAMAIASLNGYRLGDRVLQXSF 612
>gi|62088168|dbj|BAD92531.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu
antigen B) variant [Homo sapiens]
Length = 367
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 85/177 (48%), Gaps = 20/177 (11%)
Query: 118 SKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFI 176
S PV + K + V L + + +EELKS F G I K+VRD+ G+S G+GF+
Sbjct: 34 SSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFV 93
Query: 177 QFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANL 236
+ K AEKAI +NG +Q + VS A P R ++V+ L
Sbjct: 94 NYIDPKDAEKAINTLNGLRLQTKTIKVSYAR-------------PSSASIRDANLYVSGL 140
Query: 237 PSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGH 287
P + E E+LF+++G I +S ++ D + +GFI F A A+ +NG
Sbjct: 141 PKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 197
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 82/160 (51%), Gaps = 13/160 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L VN L ++ + L + F G + ++ R+K +S G+ + + P +A+KA +
Sbjct: 49 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 108
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
NG + +K + +++ P + ++V L +T+ ++EL+ F ++G
Sbjct: 109 NGLRLQTKTIKVSYAR-----------PSSASIRDANLYVSGLPKTMTQKELEQLFSQYG 157
Query: 156 NIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEMNGR 194
II +I+ D+ G S+G GFI+F AE+AI +NG+
Sbjct: 158 RIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 197
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 86/218 (39%), Gaps = 58/218 (26%)
Query: 33 KENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKA 91
++ L+V+ L ++ + L F ++G + R+ ++ SRG I F+ EA++A
Sbjct: 131 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEA 190
Query: 92 RVEMNGHLI--GSKPVIITFVELKPGQRSK-----------------PVGPEEKQYKKDK 132
+NG ++P+ + F P Q++ P+ + ++++ D
Sbjct: 191 IKGLNGQKPPGATEPITVKFAN-NPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRFRLDN 249
Query: 133 ------------------------------------VFVKNLVETVDEEELKSHFIKFGN 156
+FV NL DE L F FG
Sbjct: 250 LLNMAYGVKRFSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAPDADESILWQMFGPFGA 309
Query: 157 IIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAIIEMNG 193
+ VK++RD N K KGFGF+ +Y A AI +NG
Sbjct: 310 VTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 347
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 228 KNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDK------HIGFIEFIMPKHATHAV 281
K + V LP N+ E + LF G I S LV DK GF+ +I PK A A+
Sbjct: 46 KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 105
Query: 282 STMNGHVFKSKPLKVTLS 299
+T+NG ++K +KV+ +
Sbjct: 106 NTLNGLRLQTKTIKVSYA 123
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKN-DESRGFAIIVFNTPAEAKKARVEM 95
+ V NL P D L F FG + +V+V R+ N ++ +GF + EA A +
Sbjct: 286 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 96 NGHLIGSKPVIITF 109
NG+ +G + + ++F
Sbjct: 346 NGYRLGDRVLQVSF 359
>gi|395514482|ref|XP_003761446.1| PREDICTED: ELAV-like protein 2-like isoform 1 [Sarcophilus
harrisii]
Length = 389
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 85/177 (48%), Gaps = 20/177 (11%)
Query: 118 SKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFI 176
S PV + K + V L + + +EELKS F G I K+VRD+ G+S G+GF+
Sbjct: 55 SSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFV 114
Query: 177 QFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANL 236
+ K AEKAI +NG +Q + VS A P R ++V+ L
Sbjct: 115 NYIDPKDAEKAINTLNGLRLQTKTIKVSYAR-------------PSSASIRDANLYVSGL 161
Query: 237 PSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGH 287
P + E E+LF+++G I +S ++ D + +GFI F A A+ +NG
Sbjct: 162 PKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 218
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 87/172 (50%), Gaps = 17/172 (9%)
Query: 25 NKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFN 83
N E++K L VN L ++ + L + F G + ++ R+K +S G+ + +
Sbjct: 62 NTEDSKT----NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYI 117
Query: 84 TPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVD 143
P +A+KA +NG + +K + +++ P + ++V L +T+
Sbjct: 118 DPKDAEKAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDANLYVSGLPKTMT 166
Query: 144 EEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEMNGR 194
++EL+ F ++G II +I+ D+ G S+G GFI+F AE+AI +NG+
Sbjct: 167 QKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 218
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/219 (22%), Positives = 86/219 (39%), Gaps = 59/219 (26%)
Query: 33 KENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKA 91
++ L+V+ L ++ + L F ++G + R+ ++ SRG I F+ EA++A
Sbjct: 152 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEA 211
Query: 92 RVEMNGHL--IGSKPVIITFVELKPGQRSK-----------------PVGPEEKQYKKDK 132
+NG ++P+ + F P Q++ P+ + ++++ D
Sbjct: 212 IKGLNGQKPPSATEPITVKFAN-NPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRFRLDN 270
Query: 133 -------------------------------------VFVKNLVETVDEEELKSHFIKFG 155
+FV NL DE L F FG
Sbjct: 271 LLNMAYGVKSRFSPMTIDGMTSLAGINIPGHAGTGWCIFVYNLAPDADESILWQMFGPFG 330
Query: 156 NIIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAIIEMNG 193
+ VK++RD N K KGFGF+ +Y A AI +NG
Sbjct: 331 AVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 369
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 228 KNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDK------HIGFIEFIMPKHATHAV 281
K + V LP N+ E + LF G I S LV DK GF+ +I PK A A+
Sbjct: 67 KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 126
Query: 282 STMNGHVFKSKPLKVTLS 299
+T+NG ++K +KV+ +
Sbjct: 127 NTLNGLRLQTKTIKVSYA 144
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKN-DESRGFAIIVFNTPAEAKKARVEM 95
+ V NL P D L F FG + +V+V R+ N ++ +GF + EA A +
Sbjct: 308 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 367
Query: 96 NGHLIGSKPVIITF 109
NG+ +G + + ++F
Sbjct: 368 NGYRLGDRVLQVSF 381
>gi|440909067|gb|ELR59018.1| ELAV-like protein 2 [Bos grunniens mutus]
Length = 388
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 85/177 (48%), Gaps = 20/177 (11%)
Query: 118 SKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFI 176
S PV + K + V L + + +EELKS F G I K+VRD+ G+S G+GF+
Sbjct: 54 SSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFV 113
Query: 177 QFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANL 236
+ K AEKAI +NG +Q + VS A P R ++V+ L
Sbjct: 114 NYIDPKDAEKAINTLNGLRLQTKTIKVSYAR-------------PSSASIRDANLYVSGL 160
Query: 237 PSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGH 287
P + E E+LF+++G I +S ++ D + +GFI F A A+ +NG
Sbjct: 161 PKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 217
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 87/172 (50%), Gaps = 17/172 (9%)
Query: 25 NKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFN 83
N E++K L VN L ++ + L + F G + ++ R+K +S G+ + +
Sbjct: 61 NTEDSKT----NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYI 116
Query: 84 TPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVD 143
P +A+KA +NG + +K + +++ P + ++V L +T+
Sbjct: 117 DPKDAEKAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDANLYVSGLPKTMT 165
Query: 144 EEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEMNGR 194
++EL+ F ++G II +I+ D+ G S+G GFI+F AE+AI +NG+
Sbjct: 166 QKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 217
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/219 (22%), Positives = 86/219 (39%), Gaps = 59/219 (26%)
Query: 33 KENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKA 91
++ L+V+ L ++ + L F ++G + R+ ++ SRG I F+ EA++A
Sbjct: 151 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEA 210
Query: 92 RVEMNGHLI--GSKPVIITFVELKPGQRSK-----------------PVGPEEKQYKKDK 132
+NG ++P+ + F P Q++ P+ + ++++ D
Sbjct: 211 IKGLNGQKPPGATEPITVKFAN-NPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRFRLDN 269
Query: 133 -------------------------------------VFVKNLVETVDEEELKSHFIKFG 155
+FV NL DE L F FG
Sbjct: 270 LLNMAYGVKSRFSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAPDADESILWQMFGPFG 329
Query: 156 NIIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAIIEMNG 193
+ VK++RD N K KGFGF+ +Y A AI +NG
Sbjct: 330 AVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 368
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 228 KNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDK------HIGFIEFIMPKHATHAV 281
K + V LP N+ E + LF G I S LV DK GF+ +I PK A A+
Sbjct: 66 KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 125
Query: 282 STMNGHVFKSKPLKVTLS 299
+T+NG ++K +KV+ +
Sbjct: 126 NTLNGLRLQTKTIKVSYA 143
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKN-DESRGFAIIVFNTPAEAKKARVEM 95
+ V NL P D L F FG + +V+V R+ N ++ +GF + EA A +
Sbjct: 307 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 366
Query: 96 NGHLIGSKPVIITF 109
NG+ +G + + ++F
Sbjct: 367 NGYRLGDRVLQVSF 380
>gi|327263683|ref|XP_003216647.1| PREDICTED: ELAV-like protein 2-like isoform 1 [Anolis carolinensis]
Length = 397
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 85/177 (48%), Gaps = 20/177 (11%)
Query: 118 SKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFI 176
S PV + K + V L + + +EELKS F G I K+VRD+ G+S G+GF+
Sbjct: 64 SSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFV 123
Query: 177 QFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANL 236
+ K AEKAI +NG +Q + VS A P R ++V+ L
Sbjct: 124 NYIDPKDAEKAINTLNGLRLQTKTIKVSYAR-------------PSSASIRDANLYVSGL 170
Query: 237 PSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGH 287
P + E E+LF+++G I +S ++ D + +GFI F A A+ +NG
Sbjct: 171 PKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 227
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 87/172 (50%), Gaps = 17/172 (9%)
Query: 25 NKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFN 83
N E++K L VN L ++ + L + F G + ++ R+K +S G+ + +
Sbjct: 71 NTEDSKT----NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYI 126
Query: 84 TPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVD 143
P +A+KA +NG + +K + +++ P + ++V L +T+
Sbjct: 127 DPKDAEKAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDANLYVSGLPKTMT 175
Query: 144 EEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEMNGR 194
++EL+ F ++G II +I+ D+ G S+G GFI+F AE+AI +NG+
Sbjct: 176 QKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 227
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 86/218 (39%), Gaps = 58/218 (26%)
Query: 33 KENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKA 91
++ L+V+ L ++ + L F ++G + R+ ++ SRG I F+ EA++A
Sbjct: 161 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEA 220
Query: 92 RVEMNGHLI--GSKPVIITFVELKPGQRSK-----------------PVGPEEKQYKKDK 132
+NG ++P+ + F P Q++ P+ + ++++ D
Sbjct: 221 IKGLNGQKPPGATEPITVKFAN-NPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRFRLDN 279
Query: 133 ------------------------------------VFVKNLVETVDEEELKSHFIKFGN 156
+FV NL DE L F FG
Sbjct: 280 LLNMAYGVKRFSPMTIDGMTSLAGINIPGHAGTGWCIFVYNLAPDADESILWQMFGPFGA 339
Query: 157 IIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAIIEMNG 193
+ VK++RD N K KGFGF+ +Y A AI +NG
Sbjct: 340 VTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 377
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 228 KNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDK------HIGFIEFIMPKHATHAV 281
K + V LP N+ E + LF G I S LV DK GF+ +I PK A A+
Sbjct: 76 KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 135
Query: 282 STMNGHVFKSKPLKVTLS 299
+T+NG ++K +KV+ +
Sbjct: 136 NTLNGLRLQTKTIKVSYA 153
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKN-DESRGFAIIVFNTPAEAKKARVEM 95
+ V NL P D L F FG + +V+V R+ N ++ +GF + EA A +
Sbjct: 316 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 375
Query: 96 NGHLIGSKPVIITF 109
NG+ +G + + ++F
Sbjct: 376 NGYRLGDRVLQVSF 389
>gi|259648115|dbj|BAI40365.1| TIA-1 homologue [Bombyx mori]
Length = 402
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 72/275 (26%), Positives = 115/275 (41%), Gaps = 28/275 (10%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L+V NL+PSV L F + G ++ ++ R ++ +A + F A A MN
Sbjct: 10 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP--YAFLEFTCHTAAVTALAAMN 67
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
++ K + + + PG + P+ +FV +L ++ L+ F FG
Sbjct: 68 KRVVLDKEMKVNWA-TSPGNQ-----PKTDTSNHHHIFVGDLSPEIETNILREAFAPFGE 121
Query: 157 IIEVKIVRD-ENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVP----- 210
I +IVRD + KSKG+ F+ F AE AI MNG+ + S + + P
Sbjct: 122 ISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGV 181
Query: 211 --GKKVFPKVKPPLL-----QPARKN-KIFVANLPSNINNSEF-EELFARFGTITSSSLV 261
G + K P Q + N ++ SNI E + F++FG I +
Sbjct: 182 NEGAPSSKRAKQPTFDEVYNQSSPTNTTVYCGGFTSNIITEELMQNTFSQFGQIQDIRVF 241
Query: 262 SDKHIGFIEFIMPKHATHAVST-----MNGHVFKS 291
DK FI F + A HA+ ++GH K
Sbjct: 242 RDKGYAFIRFTTKEAAAHAIGATHNTEISGHTVKC 276
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 90/202 (44%), Gaps = 19/202 (9%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMN 192
++V NL +V E L + F + G++ KI+R+ + F++F + AA A+ MN
Sbjct: 10 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP--YAFLEFTCHTAAVTALAAMN 67
Query: 193 GRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARF 252
R++ V+ A PG + P + + IFV +L I + E FA F
Sbjct: 68 KRVVLDKEMKVNWA-TSPGNQ-------PKTDTSNHHHIFVGDLSPEIETNILREAFAPF 119
Query: 253 GTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKP--- 303
G I++ +V D K F+ F+ A A+ MNG S+ ++ S KP
Sbjct: 120 GEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAK 179
Query: 304 GVSITNPTKAPKKPAYIDEVKN 325
GV+ P+ K DEV N
Sbjct: 180 GVNEGAPSSKRAKQPTFDEVYN 201
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 84/181 (46%), Gaps = 22/181 (12%)
Query: 25 NKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKND-ESRGFAIIVFN 83
N+ + + V +L P ++ L F FG + + R+ R+ +S+G+A + F
Sbjct: 86 NQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFV 145
Query: 84 TPAEAKKARVEMNGHLIGSKPVIITFVELKPGQR----SKPVGPEEKQYKKDKVFVKN-- 137
A+A+ A MNG +GS+ + + KP + P KQ D+V+ ++
Sbjct: 146 KKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEGAPSSKRAKQPTFDEVYNQSSP 205
Query: 138 ----------LVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKA 187
+ EE +++ F +FG I ++++ RD KG+ FI+F + +AA A
Sbjct: 206 TNTTVYCGGFTSNIITEELMQNTFSQFGQIQDIRVFRD-----KGYAFIRFTTKEAAAHA 260
Query: 188 I 188
I
Sbjct: 261 I 261
>gi|395819370|ref|XP_003783066.1| PREDICTED: ELAV-like protein 2 [Otolemur garnettii]
Length = 388
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 85/177 (48%), Gaps = 20/177 (11%)
Query: 118 SKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFI 176
S PV + K + V L + + +EELKS F G I K+VRD+ G+S G+GF+
Sbjct: 55 SSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFV 114
Query: 177 QFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANL 236
+ K AEKAI +NG +Q + VS A P R ++V+ L
Sbjct: 115 NYIDPKDAEKAINTLNGLRLQTKTIKVSYAR-------------PSSASIRDANLYVSGL 161
Query: 237 PSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGH 287
P + E E+LF+++G I +S ++ D + +GFI F A A+ +NG
Sbjct: 162 PKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 218
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 87/172 (50%), Gaps = 17/172 (9%)
Query: 25 NKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFN 83
N E++K L VN L ++ + L + F G + ++ R+K +S G+ + +
Sbjct: 62 NTEDSKT----NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYI 117
Query: 84 TPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVD 143
P +A+KA +NG + +K + +++ P + ++V L +T+
Sbjct: 118 DPKDAEKAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDANLYVSGLPKTMT 166
Query: 144 EEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEMNGR 194
++EL+ F ++G II +I+ D+ G S+G GFI+F AE+AI +NG+
Sbjct: 167 QKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 218
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 228 KNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDK------HIGFIEFIMPKHATHAV 281
K + V LP N+ E + LF G I S LV DK GF+ +I PK A A+
Sbjct: 67 KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 126
Query: 282 STMNGHVFKSKPLKVTLS 299
+T+NG ++K +KV+ +
Sbjct: 127 NTLNGLRLQTKTIKVSYA 144
>gi|301763026|ref|XP_002916933.1| PREDICTED: ELAV-like protein 2-like [Ailuropoda melanoleuca]
Length = 427
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 85/177 (48%), Gaps = 20/177 (11%)
Query: 118 SKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFI 176
S PV + K + V L + + +EELKS F G I K+VRD+ G+S G+GF+
Sbjct: 94 SSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFV 153
Query: 177 QFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANL 236
+ K AEKAI +NG +Q + VS A P R ++V+ L
Sbjct: 154 NYIDPKDAEKAINTLNGLRLQTKTIKVSYAR-------------PSSASIRDANLYVSGL 200
Query: 237 PSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGH 287
P + E E+LF+++G I +S ++ D + +GFI F A A+ +NG
Sbjct: 201 PKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 257
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 87/172 (50%), Gaps = 17/172 (9%)
Query: 25 NKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFN 83
N E++K L VN L ++ + L + F G + ++ R+K +S G+ + +
Sbjct: 101 NTEDSKT----NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYI 156
Query: 84 TPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVD 143
P +A+KA +NG + +K + +++ P + ++V L +T+
Sbjct: 157 DPKDAEKAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDANLYVSGLPKTMT 205
Query: 144 EEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEMNGR 194
++EL+ F ++G II +I+ D+ G S+G GFI+F AE+AI +NG+
Sbjct: 206 QKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 257
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 86/218 (39%), Gaps = 58/218 (26%)
Query: 33 KENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKA 91
++ L+V+ L ++ + L F ++G + R+ ++ SRG I F+ EA++A
Sbjct: 191 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEA 250
Query: 92 RVEMNGHLI--GSKPVIITFVELKPGQRSK-----------------PVGPEEKQYKKDK 132
+NG ++P+ + F P Q++ P+ + ++++ D
Sbjct: 251 IKGLNGQKPPGATEPITVKFAN-NPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRFRLDN 309
Query: 133 ------------------------------------VFVKNLVETVDEEELKSHFIKFGN 156
+FV NL DE L F FG
Sbjct: 310 LLNMAYGVKRFSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAPDADESILWQMFGPFGA 369
Query: 157 IIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAIIEMNG 193
+ VK++RD N K KGFGF+ +Y A AI +NG
Sbjct: 370 VTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 407
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 228 KNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDK------HIGFIEFIMPKHATHAV 281
K + V LP N+ E + LF G I S LV DK GF+ +I PK A A+
Sbjct: 106 KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 165
Query: 282 STMNGHVFKSKPLKVTLS 299
+T+NG ++K +KV+ +
Sbjct: 166 NTLNGLRLQTKTIKVSYA 183
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKN-DESRGFAIIVFNTPAEAKKARVEM 95
+ V NL P D L F FG + +V+V R+ N ++ +GF + EA A +
Sbjct: 346 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 405
Query: 96 NGHLIGSKPVIITF 109
NG+ +G + + ++F
Sbjct: 406 NGYRLGDRVLQVSF 419
>gi|291383147|ref|XP_002708097.1| PREDICTED: ELAV-like 2-like isoform 2 [Oryctolagus cuniculus]
Length = 376
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 85/177 (48%), Gaps = 20/177 (11%)
Query: 118 SKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFI 176
S PV + K + V L + + +EELKS F G I K+VRD+ G+S G+GF+
Sbjct: 55 SSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFV 114
Query: 177 QFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANL 236
+ K AEKAI +NG +Q + VS A P R ++V+ L
Sbjct: 115 NYIDPKDAEKAINTLNGLRLQTKTIKVSYAR-------------PSSASIRDANLYVSGL 161
Query: 237 PSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGH 287
P + E E+LF+++G I +S ++ D + +GFI F A A+ +NG
Sbjct: 162 PKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 218
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 72/322 (22%), Positives = 136/322 (42%), Gaps = 63/322 (19%)
Query: 25 NKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFN 83
N E++K L VN L ++ + L + F G + ++ R+K +S G+ + +
Sbjct: 62 NTEDSKT----NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYI 117
Query: 84 TPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVD 143
P +A+KA +NG + +K + +++ P + ++V L +T+
Sbjct: 118 DPKDAEKAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDANLYVSGLPKTMT 166
Query: 144 EEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEMNGR-------- 194
++EL+ F ++G II +I+ D+ G S+G GFI+F AE+AI +NG+
Sbjct: 167 QKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEP 226
Query: 195 ---------MIQHNSTFVSLAEIVPGKKV----------FPKVKPPLL------------ 223
+ N +S P ++ F + P +
Sbjct: 227 ITVKFANNPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRFSRFSPMTIDGMTSLAGINIP 286
Query: 224 -QPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKH 276
P IFV NL + + S ++F FG +T+ ++ D K GF+
Sbjct: 287 GHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDE 346
Query: 277 ATHAVSTMNGHVFKSKPLKVTL 298
A A++++NG+ + L+V+
Sbjct: 347 AAMAIASLNGYRLGDRVLQVSF 368
>gi|348566571|ref|XP_003469075.1| PREDICTED: nucleolysin TIA-1 isoform p40-like [Cavia porcellus]
Length = 388
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 77/294 (26%), Positives = 125/294 (42%), Gaps = 36/294 (12%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK--NDESRGFAIIVFNTPAEAKKARVE 94
L+V NL V ++ F + G ++ ++ + ND + + F+ A A
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP---YCFVEFHEHRHAAAALAA 65
Query: 95 MNGHLIGSKPVIITFVELKPGQR----SKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
MNG I K V + + Q+ S V ++ VFV +L + E++K+
Sbjct: 66 MNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAA 125
Query: 151 FIKFGNIIEVKIVRD-ENGKSKGFGFIQFFSYKAAEKAIIEM-----NGRMIQHN----- 199
F FG I + ++V+D GKSKG+GF+ FF+ AE AI +M GR I+ N
Sbjct: 126 FAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 185
Query: 200 -----STFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGT 254
ST+ S + + +V + P ++ + S + + F+ FG
Sbjct: 186 PPAPKSTYESNTKQLSYDEVVSQSSP------SNCTVYCGGVTSGLTEQLMRQTFSPFGQ 239
Query: 255 ITSSSLVSDKHIGFIEFIMPKHATHAV-----STMNGHVFKSKPLKVTLSGTKP 303
I + DK F+ F + A HA+ +T+ GHV K K TL P
Sbjct: 240 IMEIRVFPDKGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDMINP 293
>gi|397521307|ref|XP_003830738.1| PREDICTED: ELAV-like protein 2 isoform 1 [Pan paniscus]
Length = 359
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 85/177 (48%), Gaps = 20/177 (11%)
Query: 118 SKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFI 176
S PV + K + V L + + +EELKS F G I K+VRD+ G+S G+GF+
Sbjct: 26 SSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFV 85
Query: 177 QFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANL 236
+ K AEKAI +NG +Q + VS A P R ++V+ L
Sbjct: 86 NYIDPKDAEKAINTLNGLRLQTKTIKVSYAR-------------PSSASIRDANLYVSGL 132
Query: 237 PSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGH 287
P + E E+LF+++G I +S ++ D + +GFI F A A+ +NG
Sbjct: 133 PKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 189
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 87/172 (50%), Gaps = 17/172 (9%)
Query: 25 NKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFN 83
N E++K L VN L ++ + L + F G + ++ R+K +S G+ + +
Sbjct: 33 NTEDSKT----NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYI 88
Query: 84 TPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVD 143
P +A+KA +NG + +K + +++ P + ++V L +T+
Sbjct: 89 DPKDAEKAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDANLYVSGLPKTMT 137
Query: 144 EEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEMNGR 194
++EL+ F ++G II +I+ D+ G S+G GFI+F AE+AI +NG+
Sbjct: 138 QKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 189
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 86/218 (39%), Gaps = 58/218 (26%)
Query: 33 KENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKA 91
++ L+V+ L ++ + L F ++G + R+ ++ SRG I F+ EA++A
Sbjct: 123 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEA 182
Query: 92 RVEMNGHLI--GSKPVIITFVELKPGQRSK-----------------PVGPEEKQYKKDK 132
+NG ++P+ + F P Q++ P+ + ++++ D
Sbjct: 183 IKGLNGQKPPGATEPITVKFAN-NPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRFRLDN 241
Query: 133 ------------------------------------VFVKNLVETVDEEELKSHFIKFGN 156
+FV NL DE L F FG
Sbjct: 242 LLNMAYGVKRFSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAPDADESILWQMFGPFGA 301
Query: 157 IIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAIIEMNG 193
+ VK++RD N K KGFGF+ +Y A AI +NG
Sbjct: 302 VTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 339
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 228 KNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDK------HIGFIEFIMPKHATHAV 281
K + V LP N+ E + LF G I S LV DK GF+ +I PK A A+
Sbjct: 38 KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 97
Query: 282 STMNGHVFKSKPLKVTLS 299
+T+NG ++K +KV+ +
Sbjct: 98 NTLNGLRLQTKTIKVSYA 115
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKN-DESRGFAIIVFNTPAEAKKARVEM 95
+ V NL P D L F FG + +V+V R+ N ++ +GF + EA A +
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 96 NGHLIGSKPVIITF 109
NG+ +G + + ++F
Sbjct: 338 NGYRLGDRVLQVSF 351
>gi|145334517|ref|NP_001078604.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332005307|gb|AED92690.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 421
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 73/286 (25%), Positives = 123/286 (43%), Gaps = 31/286 (10%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L + +L+ VD L + F + G L V+V RNK + G+ I F + A A++
Sbjct: 26 LWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQTY 85
Query: 96 NG-HLIGSKPVI-ITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHF-I 152
NG + G++ + + GQ+ GP+ +FV +L V + L+ F +
Sbjct: 86 NGTQMPGTELTFRLNWASFGSGQKVD-AGPDHS------IFVGDLAPDVTDYLLQETFRV 138
Query: 153 KFGNIIEVKIVRD-ENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE---- 207
+ ++ K+V D G+SKG+GF++F +A+ EMNG +S A
Sbjct: 139 HYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAATPKKN 198
Query: 208 -----------IVPGKKVFP---KVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFG 253
VP P V PP I VANL N+ E ++ F++ G
Sbjct: 199 VGVQQQYVTKVTVPSAVAAPVQAYVAPPESD-VTCTTISVANLDQNVTEEELKKAFSQLG 257
Query: 254 TITSSSLVSDKHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299
+ + + K G+++F A AV M G V + ++++ S
Sbjct: 258 EVIYVKIPATKGYGYVQFKTRPSAEEAVQRMQGQVIGQQAVRISWS 303
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 95/185 (51%), Gaps = 19/185 (10%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEM 191
+++ +L VDE L S F + G ++ VK++R++ G+ +G+GFI+F S+ AAE+ +
Sbjct: 26 LWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQTY 85
Query: 192 NG-RMIQHNSTF-VSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELF 249
NG +M TF ++ A G+KV + IFV +L ++ + +E F
Sbjct: 86 NGTQMPGTELTFRLNWASFGSGQKV---------DAGPDHSIFVGDLAPDVTDYLLQETF 136
Query: 250 -ARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
+ ++ + +V+D K GF++F A++ MNG ++P++++ + K
Sbjct: 137 RVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAATPK 196
Query: 303 PGVSI 307
V +
Sbjct: 197 KNVGV 201
>gi|154338582|ref|XP_001565513.1| putative poly(A)-binding protein 3 [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134062565|emb|CAM39007.1| putative poly(A)-binding protein 3 [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 552
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 75/280 (26%), Positives = 131/280 (46%), Gaps = 21/280 (7%)
Query: 35 NELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVE 94
N + V L+ +V +AL F + G + +VA + S+G+ + F T A+ KA ++
Sbjct: 99 NNIFVKKLDAAVSAKALQAAFSRCGRVLSCKVALDSEGHSKGYGFVQFET-ADGAKAALD 157
Query: 95 MNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDK-VFVKNLVETVDEEELKSHFIK 153
MNG +G VE+ P R V E K + +++KN+ T E ++++ K
Sbjct: 158 MNGAKVGDSE-----VEVAPFVRR--VDREAMAAKSFRNIYIKNIKATATEVDMRTTLEK 210
Query: 154 FGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMN----GRMIQHNSTFVSLAEIV 209
FG + + + +K F F ++AA KAI E+N + + V +
Sbjct: 211 FGKVTSLFLAEHAPFLTK-FALAVFEEHEAAVKAIAELNESEESGLTEEAVKLVVCRALS 269
Query: 210 PGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLV-----SDK 264
++ + K L ++V +LP +I + + E+FA FG ITS +++ S +
Sbjct: 270 KSERDRERKKTASLYQNHGRNLYVKHLPDDITDDKLREIFAPFGKITSCAIMRESNGSLR 329
Query: 265 HIGFIEFIMPKHATHAVSTMNGHVFKS--KPLKVTLSGTK 302
F+ F +HAT A+ +NG +S KPL V+ + K
Sbjct: 330 GFAFVCFEDKQHATAAMRELNGRSLESSKKPLYVSQAEQK 369
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 100/226 (44%), Gaps = 28/226 (12%)
Query: 49 QALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVII 107
+A+ N F + V+V R+ S G+ + F T A+A+K +N
Sbjct: 24 EAINNLFSSIAPVVSVKVCRDIATQRSLGYGYVNFQTTADAEKVIDALN----------- 72
Query: 108 TFVELKPGQRSKPV----GPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIV 163
F + PG+ + + P +++ + +FVK L V + L++ F + G ++ K+
Sbjct: 73 -FTGIAPGRYIRVMFAIRDPLQRKSGANNIFVKKLDAAVSAKALQAAFSRCGRVLSCKVA 131
Query: 164 RDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLL 223
D G SKG+GF+QF + A KA ++MNG + S E+ P + +V +
Sbjct: 132 LDSEGHSKGYGFVQFETADGA-KAALDMNGAKVGD-----SEVEVAPFVR---RVDREAM 182
Query: 224 QPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKHIGFI 269
I++ N+ + + +FG +T SL +H F+
Sbjct: 183 AAKSFRNIYIKNIKATATEVDMRTTLEKFGKVT--SLFLAEHAPFL 226
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 89/193 (46%), Gaps = 9/193 (4%)
Query: 23 RSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVF 82
R ++E +++ N++ + + +KFG + + +A + ++ FA+ VF
Sbjct: 176 RVDREAMAAKSFRNIYIKNIKATATEVDMRTTLEKFGKVTSLFLAEHAPFLTK-FALAVF 234
Query: 83 NTPAEAKKARVEMN----GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKD--KVFVK 136
A KA E+N L ++ L +R + Y+ ++VK
Sbjct: 235 EEHEAAVKAIAELNESEESGLTEEAVKLVVCRALSKSERDRERKKTASLYQNHGRNLYVK 294
Query: 137 NLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMI 196
+L + + +++L+ F FG I I+R+ NG +GF F+ F + A A+ E+NGR +
Sbjct: 295 HLPDDITDDKLREIFAPFGKITSCAIMRESNGSLRGFAFVCFEDKQHATAAMRELNGRSL 354
Query: 197 QHNS--TFVSLAE 207
+ + +VS AE
Sbjct: 355 ESSKKPLYVSQAE 367
>gi|521144|gb|AAA69698.1| ELAV-like neuronal protein 1 [Homo sapiens]
Length = 359
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 85/177 (48%), Gaps = 20/177 (11%)
Query: 118 SKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFI 176
S PV + K + V L + + +EELKS F G I K+VRD+ G+S G+GF+
Sbjct: 26 SSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFV 85
Query: 177 QFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANL 236
+ K AEKAI +NG +Q + VS A P R ++V+ L
Sbjct: 86 NYIDPKDAEKAINTLNGLRLQTKTIKVSYAR-------------PSSASIRDANLYVSGL 132
Query: 237 PSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGH 287
P + E E+LF+++G I +S ++ D + +GFI F A A+ +NG
Sbjct: 133 PKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 189
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 82/160 (51%), Gaps = 13/160 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L VN L ++ + L + F G + ++ R+K +S G+ + + P +A+KA +
Sbjct: 41 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 100
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
NG + +K + +++ P + ++V L +T+ ++EL+ F ++G
Sbjct: 101 NGLRLQTKTIKVSYAR-----------PSSASIRDANLYVSGLPKTMTQKELEQLFSQYG 149
Query: 156 NIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEMNGR 194
II +I+ D+ G S+G GFI+F AE+AI +NG+
Sbjct: 150 RIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 189
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 86/218 (39%), Gaps = 58/218 (26%)
Query: 33 KENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKA 91
++ L+V+ L ++ + L F ++G + R+ ++ SRG I F+ EA++A
Sbjct: 123 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEA 182
Query: 92 RVEMNGHLI--GSKPVIITFVELKPGQRSK-----------------PVGPEEKQYKKDK 132
+NG ++P+ + F P Q++ P+ + ++++ D
Sbjct: 183 IKGLNGQKPPGATEPITVKFAN-NPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRFRLDN 241
Query: 133 ------------------------------------VFVKNLVETVDEEELKSHFIKFGN 156
+FV NL DE L F FG
Sbjct: 242 LLNMAYGVKRFSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAPDADESILWQMFGPFGA 301
Query: 157 IIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAIIEMNG 193
+ VK++RD N K KGFGF+ +Y A AI +NG
Sbjct: 302 VTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIRSLNG 339
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 228 KNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDK------HIGFIEFIMPKHATHAV 281
K + V LP N+ E + LF G I S LV DK GF+ +I PK A A+
Sbjct: 38 KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 97
Query: 282 STMNGHVFKSKPLKVTLS 299
+T+NG ++K +KV+ +
Sbjct: 98 NTLNGLRLQTKTIKVSYA 115
Score = 42.0 bits (97), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKN-DESRGFAIIVFNTPAEAKKARVEM 95
+ V NL P D L F FG + +V+V R+ N ++ +GF + EA A +
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIRSL 337
Query: 96 NGHLIGSKPVIITF 109
NG+ +G + + ++F
Sbjct: 338 NGYRLGDRVLQVSF 351
>gi|6754264|ref|NP_034616.1| ELAV-like protein 2 isoform 2 [Mus musculus]
gi|13124206|sp|Q60899.1|ELAV2_MOUSE RecName: Full=ELAV-like protein 2; AltName: Full=ELAV-like neuronal
protein 1; AltName: Full=Hu-antigen B; Short=HuB;
AltName: Full=Nervous system-specific RNA-binding
protein Mel-N1
gi|1144004|gb|AAC52644.1| nervous system-specific RNA binding protein Mel-N1 [Mus musculus]
gi|15020258|gb|AAK74154.1| ELAV-like neuronal protein-1 [Mus musculus]
gi|148699000|gb|EDL30947.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu
antigen B) [Mus musculus]
Length = 360
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 85/177 (48%), Gaps = 20/177 (11%)
Query: 118 SKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFI 176
S PV + K + V L + + +EELKS F G I K+VRD+ G+S G+GF+
Sbjct: 26 SSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFV 85
Query: 177 QFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANL 236
+ K AEKAI +NG +Q + VS A P R ++V+ L
Sbjct: 86 NYIDPKDAEKAINTLNGLRLQTKTIKVSYAR-------------PSSASIRDANLYVSGL 132
Query: 237 PSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGH 287
P + E E+LF+++G I +S ++ D + +GFI F A A+ +NG
Sbjct: 133 PKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 189
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 82/160 (51%), Gaps = 13/160 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L VN L ++ + L + F G + ++ R+K +S G+ + + P +A+KA +
Sbjct: 41 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 100
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
NG + +K + +++ P + ++V L +T+ ++EL+ F ++G
Sbjct: 101 NGLRLQTKTIKVSYAR-----------PSSASIRDANLYVSGLPKTMTQKELEQLFSQYG 149
Query: 156 NIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEMNGR 194
II +I+ D+ G S+G GFI+F AE+AI +NG+
Sbjct: 150 RIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 189
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/219 (22%), Positives = 86/219 (39%), Gaps = 59/219 (26%)
Query: 33 KENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKA 91
++ L+V+ L ++ + L F ++G + R+ ++ SRG I F+ EA++A
Sbjct: 123 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEA 182
Query: 92 RVEMNGHLI--GSKPVIITFVELKPGQRSK-----------------PVGPEEKQYKKDK 132
+NG ++P+ + F P Q++ P+ + ++++ D
Sbjct: 183 IKGLNGQKPPGATEPITVKFAN-NPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRFRLDN 241
Query: 133 -------------------------------------VFVKNLVETVDEEELKSHFIKFG 155
+FV NL DE L F FG
Sbjct: 242 LLNMAYGVKSRFSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAPDADESILWQMFGPFG 301
Query: 156 NIIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAIIEMNG 193
+ VK++RD N K KGFGF+ +Y A AI +NG
Sbjct: 302 AVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 340
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 228 KNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDK------HIGFIEFIMPKHATHAV 281
K + V LP N+ E + LF G I S LV DK GF+ +I PK A A+
Sbjct: 38 KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 97
Query: 282 STMNGHVFKSKPLKVTLS 299
+T+NG ++K +KV+ +
Sbjct: 98 NTLNGLRLQTKTIKVSYA 115
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKN-DESRGFAIIVFNTPAEAKKARVEM 95
+ V NL P D L F FG + +V+V R+ N ++ +GF + EA A +
Sbjct: 279 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 338
Query: 96 NGHLIGSKPVIITF 109
NG+ +G + + ++F
Sbjct: 339 NGYRLGDRVLQVSF 352
>gi|295424162|ref|NP_001171354.1| ELAV-like protein 2 isoform 4 [Mus musculus]
gi|74206254|dbj|BAE24886.1| unnamed protein product [Mus musculus]
gi|149044490|gb|EDL97749.1| rCG53485, isoform CRA_a [Rattus norvegicus]
Length = 359
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 85/177 (48%), Gaps = 20/177 (11%)
Query: 118 SKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFI 176
S PV + K + V L + + +EELKS F G I K+VRD+ G+S G+GF+
Sbjct: 26 SSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFV 85
Query: 177 QFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANL 236
+ K AEKAI +NG +Q + VS A P R ++V+ L
Sbjct: 86 NYIDPKDAEKAINTLNGLRLQTKTIKVSYAR-------------PSSASIRDANLYVSGL 132
Query: 237 PSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGH 287
P + E E+LF+++G I +S ++ D + +GFI F A A+ +NG
Sbjct: 133 PKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 189
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 82/160 (51%), Gaps = 13/160 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L VN L ++ + L + F G + ++ R+K +S G+ + + P +A+KA +
Sbjct: 41 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 100
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
NG + +K + +++ P + ++V L +T+ ++EL+ F ++G
Sbjct: 101 NGLRLQTKTIKVSYAR-----------PSSASIRDANLYVSGLPKTMTQKELEQLFSQYG 149
Query: 156 NIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEMNGR 194
II +I+ D+ G S+G GFI+F AE+AI +NG+
Sbjct: 150 RIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 189
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 86/218 (39%), Gaps = 58/218 (26%)
Query: 33 KENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKA 91
++ L+V+ L ++ + L F ++G + R+ ++ SRG I F+ EA++A
Sbjct: 123 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEA 182
Query: 92 RVEMNGHLI--GSKPVIITFVELKPGQRSK-----------------PVGPEEKQYKKDK 132
+NG ++P+ + F P Q++ P+ + ++++ D
Sbjct: 183 IKGLNGQKPPGATEPITVKFAN-NPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRFRLDN 241
Query: 133 ------------------------------------VFVKNLVETVDEEELKSHFIKFGN 156
+FV NL DE L F FG
Sbjct: 242 LLNMAYGVKRFSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAPDADESILWQMFGPFGA 301
Query: 157 IIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAIIEMNG 193
+ VK++RD N K KGFGF+ +Y A AI +NG
Sbjct: 302 VTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 339
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 228 KNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDK------HIGFIEFIMPKHATHAV 281
K + V LP N+ E + LF G I S LV DK GF+ +I PK A A+
Sbjct: 38 KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 97
Query: 282 STMNGHVFKSKPLKVTLS 299
+T+NG ++K +KV+ +
Sbjct: 98 NTLNGLRLQTKTIKVSYA 115
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKN-DESRGFAIIVFNTPAEAKKARVEM 95
+ V NL P D L F FG + +V+V R+ N ++ +GF + EA A +
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 96 NGHLIGSKPVIITF 109
NG+ +G + + ++F
Sbjct: 338 NGYRLGDRVLQVSF 351
>gi|410978372|ref|XP_003995567.1| PREDICTED: ELAV-like protein 2-like isoform 2 [Felis catus]
Length = 360
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 85/177 (48%), Gaps = 20/177 (11%)
Query: 118 SKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFI 176
S PV + K + V L + + +EELKS F G I K+VRD+ G+S G+GF+
Sbjct: 26 SSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFV 85
Query: 177 QFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANL 236
+ K AEKAI +NG +Q + VS A P R ++V+ L
Sbjct: 86 NYIDPKDAEKAINTLNGLRLQTKTIKVSYAR-------------PSSASIRDANLYVSGL 132
Query: 237 PSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGH 287
P + E E+LF+++G I +S ++ D + +GFI F A A+ +NG
Sbjct: 133 PKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 189
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 82/160 (51%), Gaps = 13/160 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L VN L ++ + L + F G + ++ R+K +S G+ + + P +A+KA +
Sbjct: 41 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 100
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
NG + +K + +++ P + ++V L +T+ ++EL+ F ++G
Sbjct: 101 NGLRLQTKTIKVSYAR-----------PSSASIRDANLYVSGLPKTMTQKELEQLFSQYG 149
Query: 156 NIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEMNGR 194
II +I+ D+ G S+G GFI+F AE+AI +NG+
Sbjct: 150 RIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 189
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/219 (22%), Positives = 86/219 (39%), Gaps = 59/219 (26%)
Query: 33 KENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKA 91
++ L+V+ L ++ + L F ++G + R+ ++ SRG I F+ EA++A
Sbjct: 123 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEA 182
Query: 92 RVEMNGHLI--GSKPVIITFVELKPGQRSK-----------------PVGPEEKQYKKDK 132
+NG ++P+ + F P Q++ P+ + ++++ D
Sbjct: 183 IKGLNGQKPPGATEPITVKFAN-NPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRFRLDN 241
Query: 133 -------------------------------------VFVKNLVETVDEEELKSHFIKFG 155
+FV NL DE L F FG
Sbjct: 242 LLNMAYGVKSRFSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAPDADESILWQMFGPFG 301
Query: 156 NIIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAIIEMNG 193
+ VK++RD N K KGFGF+ +Y A AI +NG
Sbjct: 302 AVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 340
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 228 KNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDK------HIGFIEFIMPKHATHAV 281
K + V LP N+ E + LF G I S LV DK GF+ +I PK A A+
Sbjct: 38 KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 97
Query: 282 STMNGHVFKSKPLKVTLS 299
+T+NG ++K +KV+ +
Sbjct: 98 NTLNGLRLQTKTIKVSYA 115
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKN-DESRGFAIIVFNTPAEAKKARVEM 95
+ V NL P D L F FG + +V+V R+ N ++ +GF + EA A +
Sbjct: 279 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 338
Query: 96 NGHLIGSKPVIITF 109
NG+ +G + + ++F
Sbjct: 339 NGYRLGDRVLQVSF 352
>gi|46592818|ref|NP_997568.1| ELAV-like protein 2 isoform 1 [Mus musculus]
gi|29294744|gb|AAH49125.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu
antigen B) [Mus musculus]
gi|34849537|gb|AAH58393.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu
antigen B) [Mus musculus]
Length = 373
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 85/177 (48%), Gaps = 20/177 (11%)
Query: 118 SKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFI 176
S PV + K + V L + + +EELKS F G I K+VRD+ G+S G+GF+
Sbjct: 40 SSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFV 99
Query: 177 QFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANL 236
+ K AEKAI +NG +Q + VS A P R ++V+ L
Sbjct: 100 NYIDPKDAEKAINTLNGLRLQTKTIKVSYAR-------------PSSASIRDANLYVSGL 146
Query: 237 PSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGH 287
P + E E+LF+++G I +S ++ D + +GFI F A A+ +NG
Sbjct: 147 PKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 203
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 82/160 (51%), Gaps = 13/160 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L VN L ++ + L + F G + ++ R+K +S G+ + + P +A+KA +
Sbjct: 55 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 114
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
NG + +K + +++ P + ++V L +T+ ++EL+ F ++G
Sbjct: 115 NGLRLQTKTIKVSYAR-----------PSSASIRDANLYVSGLPKTMTQKELEQLFSQYG 163
Query: 156 NIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEMNGR 194
II +I+ D+ G S+G GFI+F AE+AI +NG+
Sbjct: 164 RIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 203
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 86/218 (39%), Gaps = 58/218 (26%)
Query: 33 KENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKA 91
++ L+V+ L ++ + L F ++G + R+ ++ SRG I F+ EA++A
Sbjct: 137 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEA 196
Query: 92 RVEMNGHLI--GSKPVIITFVELKPGQRSK-----------------PVGPEEKQYKKDK 132
+NG ++P+ + F P Q++ P+ + ++++ D
Sbjct: 197 IKGLNGQKPPGATEPITVKFAN-NPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRFRLDN 255
Query: 133 ------------------------------------VFVKNLVETVDEEELKSHFIKFGN 156
+FV NL DE L F FG
Sbjct: 256 LLNMAYGVKRFSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAPDADESILWQMFGPFGA 315
Query: 157 IIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAIIEMNG 193
+ VK++RD N K KGFGF+ +Y A AI +NG
Sbjct: 316 VTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 353
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 228 KNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDK------HIGFIEFIMPKHATHAV 281
K + V LP N+ E + LF G I S LV DK GF+ +I PK A A+
Sbjct: 52 KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 111
Query: 282 STMNGHVFKSKPLKVTLS 299
+T+NG ++K +KV+ +
Sbjct: 112 NTLNGLRLQTKTIKVSYA 129
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKN-DESRGFAIIVFNTPAEAKKARVEM 95
+ V NL P D L F FG + +V+V R+ N ++ +GF + EA A +
Sbjct: 292 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 351
Query: 96 NGHLIGSKPVIITF 109
NG+ +G + + ++F
Sbjct: 352 NGYRLGDRVLQVSF 365
>gi|905387|gb|AAA70417.1| Hel-N2 [Homo sapiens]
Length = 346
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 85/177 (48%), Gaps = 20/177 (11%)
Query: 118 SKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFI 176
S PV + K + V L + + +EELKS F G I K+VRD+ G+S G+GF+
Sbjct: 26 SSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFV 85
Query: 177 QFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANL 236
+ K AEKAI +NG +Q + VS A P R ++V+ L
Sbjct: 86 NYIDPKDAEKAINTLNGLRLQTKTIKVSYAR-------------PSSASIRDANLYVSGL 132
Query: 237 PSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGH 287
P + E E+LF+++G I +S ++ D + +GFI F A A+ +NG
Sbjct: 133 PKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 189
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 72/317 (22%), Positives = 135/317 (42%), Gaps = 66/317 (20%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L VN L ++ + L + F G + ++ R+K +S G+ + + P +A+KA +
Sbjct: 41 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 100
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
NG + +K + +++ P + ++V L +T+ ++EL+ F ++G
Sbjct: 101 NGLRLQTKTIKVSYAR-----------PSSASIRDANLYVSGLPKTMTQKELEQLFSQYG 149
Query: 156 NIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEMNGR-----------------MIQ 197
II +I+ D+ G S+G GFI+F AE+AI +NG+ +
Sbjct: 150 RIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQK 209
Query: 198 HNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNK--------------------------I 231
N +S P ++ +P PL Q A++ + I
Sbjct: 210 TNQAILSQLYQSPNRR-YPG---PLAQQAQRFRFSPMTIDGMTSLAGINIPGHPGTGWCI 265
Query: 232 FVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMN 285
FV NL + + S ++F FG +T+ ++ D K GF+ A A+ ++N
Sbjct: 266 FVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIRSLN 325
Query: 286 GHVFKSKPLKVTLSGTK 302
G+ + L+V+ K
Sbjct: 326 GYRLGDRVLQVSFKTNK 342
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 228 KNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDK------HIGFIEFIMPKHATHAV 281
K + V LP N+ E + LF G I S LV DK GF+ +I PK A A+
Sbjct: 38 KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 97
Query: 282 STMNGHVFKSKPLKVTLS 299
+T+NG ++K +KV+ +
Sbjct: 98 NTLNGLRLQTKTIKVSYA 115
>gi|341883809|gb|EGT39744.1| hypothetical protein CAEBREN_05859 [Caenorhabditis brenneri]
Length = 467
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 63/196 (32%), Positives = 104/196 (53%), Gaps = 11/196 (5%)
Query: 22 ARSNKENNKVYKE-NELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAII 80
A+ N+E + K+ ++V N + ++L F K+GT+ V + +S+GF +
Sbjct: 17 AQRNRELGETAKKYTNVYVKNFGDHYNKESLEKLFAKYGTITSCDVM-TSDGKSKGFGFV 75
Query: 81 VFNTPAEAKKARVEMNGHLI-GSKPVIITFVELKPGQRSKPVGPEEKQYKKDK------- 132
F P EA+ A +N + GS + K +R + + +Q+K ++
Sbjct: 76 AFAEPEEAEAAVQALNDSPVEGSDLKLHVCRAQKKSERHAELKKKHEQHKVERMQKYQGV 135
Query: 133 -VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEM 191
++VKNL E+VD+E LK F FGNI K++ DENG+SKGFGF+ F + A A+ EM
Sbjct: 136 NLYVKNLDESVDDEALKKQFESFGNITSAKVMTDENGRSKGFGFVCFEKPEEATTAVTEM 195
Query: 192 NGRMIQHNSTFVSLAE 207
N +M+ +V+LA+
Sbjct: 196 NSKMVCSKPLYVALAQ 211
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 105/202 (51%), Gaps = 21/202 (10%)
Query: 116 QRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGF 175
QR++ +G K+Y V+VKN + ++E L+ F K+G I ++ +GKSKGFGF
Sbjct: 18 QRNRELGETAKKY--TNVYVKNFGDHYNKESLEKLFAKYGTITSCDVM-TSDGKSKGFGF 74
Query: 176 IQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----------AEIVPGKKVFPKVKPPLLQP 225
+ F + AE A+ +N ++ + + + AE+ KK + K +Q
Sbjct: 75 VAFAEPEEAEAAVQALNDSPVEGSDLKLHVCRAQKKSERHAEL---KKKHEQHKVERMQK 131
Query: 226 ARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHA 280
+ ++V NL ++++ ++ F FG ITS+ +++D K GF+ F P+ AT A
Sbjct: 132 YQGVNLYVKNLDESVDDEALKKQFESFGNITSAKVMTDENGRSKGFGFVCFEKPEEATTA 191
Query: 281 VSTMNGHVFKSKPLKVTLSGTK 302
V+ MN + SKPL V L+ K
Sbjct: 192 VTEMNSKMVCSKPLYVALAQRK 213
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 54/93 (58%)
Query: 27 ENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPA 86
E + Y+ L+V NL+ SVD++AL +F+ FG + +V ++N S+GF + F P
Sbjct: 127 ERMQKYQGVNLYVKNLDESVDDEALKKQFESFGNITSAKVMTDENGRSKGFGFVCFEKPE 186
Query: 87 EAKKARVEMNGHLIGSKPVIITFVELKPGQRSK 119
EA A EMN ++ SKP+ + + K +R++
Sbjct: 187 EATTAVTEMNSKMVCSKPLYVALAQRKEDRRAQ 219
>gi|126334000|ref|XP_001364864.1| PREDICTED: ELAV-like protein 2-like isoform 1 [Monodelphis
domestica]
Length = 360
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 85/177 (48%), Gaps = 20/177 (11%)
Query: 118 SKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFI 176
S PV + K + V L + + +EELKS F G I K+VRD+ G+S G+GF+
Sbjct: 26 SSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFV 85
Query: 177 QFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANL 236
+ K AEKAI +NG +Q + VS A P R ++V+ L
Sbjct: 86 NYIDPKDAEKAINTLNGLRLQTKTIKVSYAR-------------PSSASIRDANLYVSGL 132
Query: 237 PSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGH 287
P + E E+LF+++G I +S ++ D + +GFI F A A+ +NG
Sbjct: 133 PKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 189
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 82/160 (51%), Gaps = 13/160 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L VN L ++ + L + F G + ++ R+K +S G+ + + P +A+KA +
Sbjct: 41 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 100
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
NG + +K + +++ P + ++V L +T+ ++EL+ F ++G
Sbjct: 101 NGLRLQTKTIKVSYAR-----------PSSASIRDANLYVSGLPKTMTQKELEQLFSQYG 149
Query: 156 NIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEMNGR 194
II +I+ D+ G S+G GFI+F AE+AI +NG+
Sbjct: 150 RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 189
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/219 (22%), Positives = 86/219 (39%), Gaps = 59/219 (26%)
Query: 33 KENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKA 91
++ L+V+ L ++ + L F ++G + R+ ++ SRG I F+ EA++A
Sbjct: 123 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEA 182
Query: 92 RVEMNGHLI--GSKPVIITFVELKPGQRSK-----------------PVGPEEKQYKKDK 132
+NG ++P+ + F P Q++ P+ + ++++ D
Sbjct: 183 IKGLNGQKPPGATEPITVKFAN-NPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRFRLDN 241
Query: 133 -------------------------------------VFVKNLVETVDEEELKSHFIKFG 155
+FV NL DE L F FG
Sbjct: 242 LLNMAYGVKSRFSPMTIDGMTSLAGINIPGHAGTGWCIFVYNLAPDADESILWQMFGPFG 301
Query: 156 NIIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAIIEMNG 193
+ VK++RD N K KGFGF+ +Y A AI +NG
Sbjct: 302 AVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 340
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 228 KNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDK------HIGFIEFIMPKHATHAV 281
K + V LP N+ E + LF G I S LV DK GF+ +I PK A A+
Sbjct: 38 KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 97
Query: 282 STMNGHVFKSKPLKVTLS 299
+T+NG ++K +KV+ +
Sbjct: 98 NTLNGLRLQTKTIKVSYA 115
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKN-DESRGFAIIVFNTPAEAKKARVEM 95
+ V NL P D L F FG + +V+V R+ N ++ +GF + EA A +
Sbjct: 279 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 338
Query: 96 NGHLIGSKPVIITF 109
NG+ +G + + ++F
Sbjct: 339 NGYRLGDRVLQVSF 352
>gi|119578987|gb|EAW58583.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu
antigen B), isoform CRA_b [Homo sapiens]
Length = 373
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 85/177 (48%), Gaps = 20/177 (11%)
Query: 118 SKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFI 176
S PV + K + V L + + +EELKS F G I K+VRD+ G+S G+GF+
Sbjct: 40 SSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFV 99
Query: 177 QFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANL 236
+ K AEKAI +NG +Q + VS A P R ++V+ L
Sbjct: 100 NYIDPKDAEKAINTLNGLRLQTKTIKVSYAR-------------PSSASIRDANLYVSGL 146
Query: 237 PSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGH 287
P + E E+LF+++G I +S ++ D + +GFI F A A+ +NG
Sbjct: 147 PKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 203
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 82/160 (51%), Gaps = 13/160 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L VN L ++ + L + F G + ++ R+K +S G+ + + P +A+KA +
Sbjct: 55 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 114
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
NG + +K + +++ P + ++V L +T+ ++EL+ F ++G
Sbjct: 115 NGLRLQTKTIKVSYAR-----------PSSASIRDANLYVSGLPKTMTQKELEQLFSQYG 163
Query: 156 NIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEMNGR 194
II +I+ D+ G S+G GFI+F AE+AI +NG+
Sbjct: 164 RIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 203
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 86/218 (39%), Gaps = 58/218 (26%)
Query: 33 KENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKA 91
++ L+V+ L ++ + L F ++G + R+ ++ SRG I F+ EA++A
Sbjct: 137 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEA 196
Query: 92 RVEMNGHLI--GSKPVIITFVELKPGQRSK-----------------PVGPEEKQYKKDK 132
+NG ++P+ + F P Q++ P+ + ++++ D
Sbjct: 197 IKGLNGQKPPGATEPITVKFAN-NPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRFRLDN 255
Query: 133 ------------------------------------VFVKNLVETVDEEELKSHFIKFGN 156
+FV NL DE L F FG
Sbjct: 256 LLNMAYGVKRFSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAPDADESILWQMFGPFGA 315
Query: 157 IIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAIIEMNG 193
+ VK++RD N K KGFGF+ +Y A AI +NG
Sbjct: 316 VTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 353
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 228 KNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDK------HIGFIEFIMPKHATHAV 281
K + V LP N+ E + LF G I S LV DK GF+ +I PK A A+
Sbjct: 52 KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 111
Query: 282 STMNGHVFKSKPLKVTLS 299
+T+NG ++K +KV+ +
Sbjct: 112 NTLNGLRLQTKTIKVSYA 129
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKN-DESRGFAIIVFNTPAEAKKARVEM 95
+ V NL P D L F FG + +V+V R+ N ++ +GF + EA A +
Sbjct: 292 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 351
Query: 96 NGHLIGSKPVIITF 109
NG+ +G + + ++F
Sbjct: 352 NGYRLGDRVLQVSF 365
>gi|115511032|ref|NP_004423.2| ELAV-like protein 2 isoform a [Homo sapiens]
gi|197097794|ref|NP_001127414.1| ELAV-like protein 2 [Pongo abelii]
gi|149736900|ref|XP_001498035.1| PREDICTED: ELAV-like protein 2 isoform 1 [Equus caballus]
gi|291383145|ref|XP_002708096.1| PREDICTED: ELAV-like 2-like isoform 1 [Oryctolagus cuniculus]
gi|296190038|ref|XP_002743026.1| PREDICTED: ELAV-like protein 2 isoform 2 [Callithrix jacchus]
gi|311245695|ref|XP_001924617.2| PREDICTED: ELAV-like protein 2 isoform 1 [Sus scrofa]
gi|332229737|ref|XP_003264044.1| PREDICTED: ELAV-like protein 2 isoform 2 [Nomascus leucogenys]
gi|332831660|ref|XP_520515.3| PREDICTED: ELAV-like protein 2 isoform 3 [Pan troglodytes]
gi|345777488|ref|XP_865062.2| PREDICTED: ELAV-like protein 2 isoform 3 [Canis lupus familiaris]
gi|402897261|ref|XP_003911687.1| PREDICTED: ELAV-like protein 2 isoform 1 [Papio anubis]
gi|403272638|ref|XP_003928159.1| PREDICTED: ELAV-like protein 2 isoform 1 [Saimiri boliviensis
boliviensis]
gi|426220513|ref|XP_004004459.1| PREDICTED: ELAV-like protein 2 isoform 1 [Ovis aries]
gi|426361461|ref|XP_004047929.1| PREDICTED: ELAV-like protein 2 isoform 1 [Gorilla gorilla gorilla]
gi|75070704|sp|Q5R9Z6.1|ELAV2_PONAB RecName: Full=ELAV-like protein 2
gi|93141258|sp|Q12926.2|ELAV2_HUMAN RecName: Full=ELAV-like protein 2; AltName: Full=ELAV-like neuronal
protein 1; AltName: Full=Hu-antigen B; Short=HuB;
AltName: Full=Nervous system-specific RNA-binding
protein Hel-N1
gi|55729364|emb|CAH91414.1| hypothetical protein [Pongo abelii]
gi|119578989|gb|EAW58585.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu
antigen B), isoform CRA_d [Homo sapiens]
gi|261860488|dbj|BAI46766.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like protein 2
[synthetic construct]
gi|380784355|gb|AFE64053.1| ELAV-like protein 2 isoform a [Macaca mulatta]
Length = 359
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 85/177 (48%), Gaps = 20/177 (11%)
Query: 118 SKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFI 176
S PV + K + V L + + +EELKS F G I K+VRD+ G+S G+GF+
Sbjct: 26 SSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFV 85
Query: 177 QFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANL 236
+ K AEKAI +NG +Q + VS A P R ++V+ L
Sbjct: 86 NYIDPKDAEKAINTLNGLRLQTKTIKVSYAR-------------PSSASIRDANLYVSGL 132
Query: 237 PSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGH 287
P + E E+LF+++G I +S ++ D + +GFI F A A+ +NG
Sbjct: 133 PKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 189
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 82/160 (51%), Gaps = 13/160 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L VN L ++ + L + F G + ++ R+K +S G+ + + P +A+KA +
Sbjct: 41 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 100
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
NG + +K + +++ P + ++V L +T+ ++EL+ F ++G
Sbjct: 101 NGLRLQTKTIKVSYAR-----------PSSASIRDANLYVSGLPKTMTQKELEQLFSQYG 149
Query: 156 NIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEMNGR 194
II +I+ D+ G S+G GFI+F AE+AI +NG+
Sbjct: 150 RIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 189
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 86/218 (39%), Gaps = 58/218 (26%)
Query: 33 KENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKA 91
++ L+V+ L ++ + L F ++G + R+ ++ SRG I F+ EA++A
Sbjct: 123 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEA 182
Query: 92 RVEMNGHLI--GSKPVIITFVELKPGQRSK-----------------PVGPEEKQYKKDK 132
+NG ++P+ + F P Q++ P+ + ++++ D
Sbjct: 183 IKGLNGQKPPGATEPITVKFAN-NPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRFRLDN 241
Query: 133 ------------------------------------VFVKNLVETVDEEELKSHFIKFGN 156
+FV NL DE L F FG
Sbjct: 242 LLNMAYGVKRFSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAPDADESILWQMFGPFGA 301
Query: 157 IIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAIIEMNG 193
+ VK++RD N K KGFGF+ +Y A AI +NG
Sbjct: 302 VTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 339
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 228 KNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDK------HIGFIEFIMPKHATHAV 281
K + V LP N+ E + LF G I S LV DK GF+ +I PK A A+
Sbjct: 38 KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 97
Query: 282 STMNGHVFKSKPLKVTLS 299
+T+NG ++K +KV+ +
Sbjct: 98 NTLNGLRLQTKTIKVSYA 115
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKN-DESRGFAIIVFNTPAEAKKARVEM 95
+ V NL P D L F FG + +V+V R+ N ++ +GF + EA A +
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 96 NGHLIGSKPVIITF 109
NG+ +G + + ++F
Sbjct: 338 NGYRLGDRVLQVSF 351
>gi|15020256|gb|AAK74153.1| ELAV-like neuronal protein-2 [Mus musculus]
Length = 347
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 85/177 (48%), Gaps = 20/177 (11%)
Query: 118 SKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFI 176
S PV + K + V L + + +EELKS F G I K+VRD+ G+S G+GF+
Sbjct: 26 SSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFV 85
Query: 177 QFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANL 236
+ K AEKAI +NG +Q + VS A P R ++V+ L
Sbjct: 86 NYIDPKDAEKAINTLNGLRLQTKTIKVSYAR-------------PSSASIRDANLYVSGL 132
Query: 237 PSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGH 287
P + E E+LF+++G I +S ++ D + +GFI F A A+ +NG
Sbjct: 133 PKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 189
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 71/314 (22%), Positives = 135/314 (42%), Gaps = 67/314 (21%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L VN L ++ + L + F G + ++ R+K +S G+ + + P +A+KA +
Sbjct: 41 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 100
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
NG + +K + +++ P + ++V L +T+ ++EL+ F ++G
Sbjct: 101 NGLRLQTKTIKVSYAR-----------PSSASIRDANLYVSGLPKTMTQKELEQLFSQYG 149
Query: 156 NIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEMNGR-----------------MIQ 197
II +I+ D+ G S+G GFI+F AE+AI +NG+ +
Sbjct: 150 RIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQK 209
Query: 198 HNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNK--------------------------- 230
N +S P ++ +P PL Q A++ +
Sbjct: 210 TNQAILSQLYQSPNRR-YPG---PLAQQAQRFRRFSPMTIDGMTSLAGINIPGHPGTGWC 265
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTM 284
IFV NL + + S ++F FG +T+ ++ D K GF+ A A++++
Sbjct: 266 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 325
Query: 285 NGHVFKSKPLKVTL 298
NG+ + L+V+
Sbjct: 326 NGYRLGDRVLQVSF 339
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 228 KNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDK------HIGFIEFIMPKHATHAV 281
K + V LP N+ E + LF G I S LV DK GF+ +I PK A A+
Sbjct: 38 KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 97
Query: 282 STMNGHVFKSKPLKVTLS 299
+T+NG ++K +KV+ +
Sbjct: 98 NTLNGLRLQTKTIKVSYA 115
>gi|46592826|ref|NP_997569.1| ELAV-like protein 2 isoform 3 [Mus musculus]
gi|49114392|gb|AAH46598.2| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu
antigen B) [Mus musculus]
Length = 347
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 85/177 (48%), Gaps = 20/177 (11%)
Query: 118 SKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFI 176
S PV + K + V L + + +EELKS F G I K+VRD+ G+S G+GF+
Sbjct: 26 SSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFV 85
Query: 177 QFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANL 236
+ K AEKAI +NG +Q + VS A P R ++V+ L
Sbjct: 86 NYIDPKDAEKAINTLNGLRLQTKTIKVSYAR-------------PSSASIRDANLYVSGL 132
Query: 237 PSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGH 287
P + E E+LF+++G I +S ++ D + +GFI F A A+ +NG
Sbjct: 133 PKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 189
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 72/322 (22%), Positives = 136/322 (42%), Gaps = 63/322 (19%)
Query: 25 NKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFN 83
N E++K L VN L ++ + L + F G + ++ R+K +S G+ + +
Sbjct: 33 NTEDSKT----NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYI 88
Query: 84 TPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVD 143
P +A+KA +NG + +K + +++ P + ++V L +T+
Sbjct: 89 DPKDAEKAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDANLYVSGLPKTMT 137
Query: 144 EEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEMNGR-------- 194
++EL+ F ++G II +I+ D+ G S+G GFI+F AE+AI +NG+
Sbjct: 138 QKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEP 197
Query: 195 ---------MIQHNSTFVSLAEIVPGKKV----------FPKVKPPLL------------ 223
+ N +S P ++ F + P +
Sbjct: 198 ITVKFANNPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRFSRFSPMTIDGMTSLAGINIP 257
Query: 224 -QPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKH 276
P IFV NL + + S ++F FG +T+ ++ D K GF+
Sbjct: 258 GHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDE 317
Query: 277 ATHAVSTMNGHVFKSKPLKVTL 298
A A++++NG+ + L+V+
Sbjct: 318 AAMAIASLNGYRLGDRVLQVSF 339
>gi|348587078|ref|XP_003479295.1| PREDICTED: ELAV-like protein 2 isoform 2 [Cavia porcellus]
Length = 347
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 85/177 (48%), Gaps = 20/177 (11%)
Query: 118 SKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFI 176
S PV + K + V L + + +EELKS F G I K+VRD+ G+S G+GF+
Sbjct: 26 SSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFV 85
Query: 177 QFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANL 236
+ K AEKAI +NG +Q + VS A P R ++V+ L
Sbjct: 86 NYIDPKDAEKAINTLNGLRLQTKTIKVSYAR-------------PSSASIRDANLYVSGL 132
Query: 237 PSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGH 287
P + E E+LF+++G I +S ++ D + +GFI F A A+ +NG
Sbjct: 133 PKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 189
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 72/322 (22%), Positives = 136/322 (42%), Gaps = 63/322 (19%)
Query: 25 NKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFN 83
N E++K L VN L ++ + L + F G + ++ R+K +S G+ + +
Sbjct: 33 NTEDSKT----NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYI 88
Query: 84 TPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVD 143
P +A+KA +NG + +K + +++ P + ++V L +T+
Sbjct: 89 DPKDAEKAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDANLYVSGLPKTMT 137
Query: 144 EEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEMNGR-------- 194
++EL+ F ++G II +I+ D+ G S+G GFI+F AE+AI +NG+
Sbjct: 138 QKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEP 197
Query: 195 ---------MIQHNSTFVSLAEIVPGKKV----------FPKVKPPLL------------ 223
+ N +S P ++ F + P +
Sbjct: 198 ITVKFANNPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRFSRFSPMTIDGMTSLAGINIP 257
Query: 224 -QPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKH 276
P IFV NL + + S ++F FG +T+ ++ D K GF+
Sbjct: 258 GHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDE 317
Query: 277 ATHAVSTMNGHVFKSKPLKVTL 298
A A++++NG+ + L+V+
Sbjct: 318 AAMAIASLNGYRLGDRVLQVSF 339
>gi|116786296|gb|ABK24055.1| unknown [Picea sitchensis]
Length = 299
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 91/183 (49%), Gaps = 11/183 (6%)
Query: 132 KVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRD-ENGKSKGFGFIQFFSYKAAEKAIIE 190
KVFV NL +VD EL F G++ V+++ D + G+S+GF F+ + A++A+ +
Sbjct: 114 KVFVGNLPWSVDSAELAELFKDSGDVTMVEVIYDRQTGRSRGFAFVTMATQADADEAVEK 173
Query: 191 MNGRMIQHNSTFVSLAEIVPGKKVFPKV----KPPLLQPARKNKIFVANLPSNINNSEFE 246
NG Q + V+ P P+ + P N++FV NLP ++ E
Sbjct: 174 FNGYEYQGRTLRVNSGPPPPKDSFAPRGGFRNEKPSGNYNSANRVFVGNLPWGADDLSLE 233
Query: 247 ELFARFGTITSSSLVSDKH------IGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSG 300
+LF+ G + + +V D+ GF+ P+ A+S+++G + +KVTL+
Sbjct: 234 QLFSDHGKVMEAKVVYDRETGRSRGFGFVTLSSPQEIEEAISSLDGSDMDGRQIKVTLAE 293
Query: 301 TKP 303
TKP
Sbjct: 294 TKP 296
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 87/183 (47%), Gaps = 8/183 (4%)
Query: 36 ELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVE 94
++ V NL SVD+ L FK G + V V ++ SRGFA + T A+A +A +
Sbjct: 114 KVFVGNLPWSVDSAELAELFKDSGDVTMVEVIYDRQTGRSRGFAFVTMATQADADEAVEK 173
Query: 95 MNGHLIGSKPVIITFVELKPGQRSKPVG------PEEKQYKKDKVFVKNLVETVDEEELK 148
NG+ + + + P P G P ++VFV NL D+ L+
Sbjct: 174 FNGYEYQGRTLRVNSGPPPPKDSFAPRGGFRNEKPSGNYNSANRVFVGNLPWGADDLSLE 233
Query: 149 SHFIKFGNIIEVKIVRD-ENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
F G ++E K+V D E G+S+GFGF+ S + E+AI ++G + V+LAE
Sbjct: 234 QLFSDHGKVMEAKVVYDRETGRSRGFGFVTLSSPQEIEEAISSLDGSDMDGRQIKVTLAE 293
Query: 208 IVP 210
P
Sbjct: 294 TKP 296
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 7/85 (8%)
Query: 225 PARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKHIG------FIEFIMPKHAT 278
P+ K+FV NLP +++++E ELF G +T ++ D+ G F+ A
Sbjct: 109 PSANLKVFVGNLPWSVDSAELAELFKDSGDVTMVEVIYDRQTGRSRGFAFVTMATQADAD 168
Query: 279 HAVSTMNGHVFKSKPLKVTLSGTKP 303
AV NG+ ++ + L+V SG P
Sbjct: 169 EAVEKFNGYEYQGRTLRVN-SGPPP 192
>gi|15020254|gb|AAK74152.1| ELAV-like neuronal protein-3 [Mus musculus]
Length = 348
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 85/177 (48%), Gaps = 20/177 (11%)
Query: 118 SKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFI 176
S PV + K + V L + + +EELKS F G I K+VRD+ G+S G+GF+
Sbjct: 26 SSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFV 85
Query: 177 QFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANL 236
+ K AEKAI +NG +Q + VS A P R ++V+ L
Sbjct: 86 NYIDPKDAEKAINTLNGLRLQTKTIKVSYAR-------------PSSASIRDANLYVSGL 132
Query: 237 PSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGH 287
P + E E+LF+++G I +S ++ D + +GFI F A A+ +NG
Sbjct: 133 PKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 189
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 71/315 (22%), Positives = 135/315 (42%), Gaps = 68/315 (21%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L VN L ++ + L + F G + ++ R+K +S G+ + + P +A+KA +
Sbjct: 41 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 100
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
NG + +K + +++ P + ++V L +T+ ++EL+ F ++G
Sbjct: 101 NGLRLQTKTIKVSYAR-----------PSSASIRDANLYVSGLPKTMTQKELEQLFSQYG 149
Query: 156 NIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEMNGR-----------------MIQ 197
II +I+ D+ G S+G GFI+F AE+AI +NG+ +
Sbjct: 150 RIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQK 209
Query: 198 HNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNK--------------------------- 230
N +S P ++ +P PL Q A++ +
Sbjct: 210 TNQAILSQLYQSPNRR-YPG---PLAQQAQRFRSRFSPMTIDGMTSLAGINIPGHPGTGW 265
Query: 231 -IFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVST 283
IFV NL + + S ++F FG +T+ ++ D K GF+ A A+++
Sbjct: 266 CIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 325
Query: 284 MNGHVFKSKPLKVTL 298
+NG+ + L+V+
Sbjct: 326 LNGYRLGDRVLQVSF 340
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 228 KNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDK------HIGFIEFIMPKHATHAV 281
K + V LP N+ E + LF G I S LV DK GF+ +I PK A A+
Sbjct: 38 KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 97
Query: 282 STMNGHVFKSKPLKVTLS 299
+T+NG ++K +KV+ +
Sbjct: 98 NTLNGLRLQTKTIKVSYA 115
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.314 0.133 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,239,457,791
Number of Sequences: 23463169
Number of extensions: 217226879
Number of successful extensions: 687194
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 7282
Number of HSP's successfully gapped in prelim test: 16874
Number of HSP's that attempted gapping in prelim test: 587347
Number of HSP's gapped (non-prelim): 72860
length of query: 333
length of database: 8,064,228,071
effective HSP length: 143
effective length of query: 190
effective length of database: 9,003,962,200
effective search space: 1710752818000
effective search space used: 1710752818000
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 77 (34.3 bits)