BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8956
(333 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1
Length = 644
Score = 154 bits (389), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 95/273 (34%), Positives = 155/273 (56%), Gaps = 13/273 (4%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+DN+AL + F FG + +V ++N S+G+A + F T A KA +MNG
Sbjct: 103 IKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGM 161
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ + V + + + +R +G + K++ V++KN E VD+E LK F +FG +
Sbjct: 162 LLNDRKVFVGRFKSRK-EREAELGAKAKEFTN--VYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKK 213
VK++RD NGKSKGFGF+ + ++ A KA+ EMNG+ I FV A+ K+
Sbjct: 219 SVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKR 278
Query: 214 VFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGFI 269
F ++K + + +++ NL I++ + + F+ FG+ITS+ ++ + K GF+
Sbjct: 279 KFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFV 338
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F P+ AT AV+ MNG + SKPL V L+ K
Sbjct: 339 CFSSPEEATKAVTEMNGRIVGSKPLYVALAQRK 371
Score = 120 bits (302), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 128/269 (47%), Gaps = 37/269 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KP+ I + + P R VG VF+KNL +++D + L
Sbjct: 68 ALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+ F+ F + +AA+KAI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N +++ +ELF++FG S ++
Sbjct: 178 EREAELGAKAKEF-------------TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMR 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNG 286
D K GF+ + + A AV MNG
Sbjct: 225 DPNGKSKGFGFVSYEKHEDANKAVEEMNG 253
Score = 66.2 bits (160), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L++ NL+ ++D++ L EF FG++ +V ++ S+GF + F++P EA KA
Sbjct: 291 YQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKA 349
Query: 92 RVEMNGHLIGSKPVIITFVELK 113
EMNG ++GSKP+ + + K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
Score = 39.7 bits (91), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITS----SSLVSDKHIGF--IEFIMPKHATHAVSTM 284
++V +L S++ + E F+ G + S +++ + +G+ + F P A A+ TM
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N V K KP+++ S P +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSL 93
>sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2
SV=1
Length = 636
Score = 150 bits (380), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 99/308 (32%), Positives = 165/308 (53%), Gaps = 23/308 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK + W + D R + N + + NL+ S+DN+AL + F FG +
Sbjct: 78 KGKPVRIMWSQ---RDPSLRKSGVGN-------IFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V ++N S+G+ + F T A++A +MNG L+ + V + + + +R +G
Sbjct: 128 CKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR-KEREAELGA 185
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
K++ V++KN E +D+E LK F KFG + VK++ DE+GKSKGFGF+ F ++
Sbjct: 186 RAKEFTN--VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A+KA+ EMNG+ + +V A+ K+ F ++K + + ++V NL
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 239 NINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
I++ + F+ FGTITS+ ++ + K GF+ F P+ AT AV+ MNG + +KPL
Sbjct: 304 GIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Query: 295 KVTLSGTK 302
V L+ K
Sbjct: 364 YVALAQRK 371
Score = 130 bits (327), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 88/279 (31%), Positives = 134/279 (48%), Gaps = 37/279 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KPV I + + P R VG +F+KNL +++D + L
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVG---------NIFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+GF+ F + +AAE+AI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N ++++ +ELF +FG S +++
Sbjct: 178 EREAELGARAKEF-------------TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMT 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
D K GF+ F + A AV MNG K + V
Sbjct: 225 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Score = 38.5 bits (88), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITS----SSLVSDKHIGF--IEFIMPKHATHAVSTM 284
++V +L ++ + E F+ G I S +++ + +G+ + F P A A+ TM
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N V K KP+++ S P +
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSL 93
>sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2
Length = 636
Score = 150 bits (379), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 99/308 (32%), Positives = 165/308 (53%), Gaps = 23/308 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK + W + D R + N + + NL+ S+DN+AL + F FG +
Sbjct: 78 KGKPVRIMWSQ---RDPSLRKSGVGN-------IFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V ++N S+G+ + F T A++A +MNG L+ + V + + + +R +G
Sbjct: 128 CKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR-KEREAELGA 185
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
K++ V++KN E +D+E LK F KFG + VK++ DE+GKSKGFGF+ F ++
Sbjct: 186 RAKEFTN--VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A+KA+ EMNG+ + +V A+ K+ F ++K + + ++V NL
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 239 NINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
I++ + F+ FGTITS+ ++ + K GF+ F P+ AT AV+ MNG + +KPL
Sbjct: 304 GIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Query: 295 KVTLSGTK 302
V L+ K
Sbjct: 364 YVALAQRK 371
Score = 129 bits (324), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 87/279 (31%), Positives = 134/279 (48%), Gaps = 37/279 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KPV I + + P R VG +F+KNL +++D + L
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVG---------NIFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+GF+ F + +AAE+AI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N ++++ ++LF +FG S +++
Sbjct: 178 EREAELGARAKEF-------------TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMT 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
D K GF+ F + A AV MNG K + V
Sbjct: 225 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Score = 38.5 bits (88), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITS----SSLVSDKHIGF--IEFIMPKHATHAVSTM 284
++V +L ++ + E F+ G I S +++ + +G+ + F P A A+ TM
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N V K KP+++ S P +
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSL 93
>sp|P61286|PABP1_BOVIN Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1
Length = 636
Score = 150 bits (379), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 99/308 (32%), Positives = 165/308 (53%), Gaps = 23/308 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK + W + D R + N + + NL+ S+DN+AL + F FG +
Sbjct: 78 KGKPVRIMWSQ---RDPSLRKSGVGN-------IFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V ++N S+G+ + F T A++A +MNG L+ + V + + + +R +G
Sbjct: 128 CKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR-KEREAELGA 185
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
K++ V++KN E +D+E LK F KFG + VK++ DE+GKSKGFGF+ F ++
Sbjct: 186 RAKEFTN--VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A+KA+ EMNG+ + +V A+ K+ F ++K + + ++V NL
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 239 NINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
I++ + F+ FGTITS+ ++ + K GF+ F P+ AT AV+ MNG + +KPL
Sbjct: 304 GIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Query: 295 KVTLSGTK 302
V L+ K
Sbjct: 364 YVALAQRK 371
Score = 129 bits (324), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 87/279 (31%), Positives = 134/279 (48%), Gaps = 37/279 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KPV I + + P R VG +F+KNL +++D + L
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVG---------NIFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+GF+ F + +AAE+AI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N ++++ ++LF +FG S +++
Sbjct: 178 EREAELGARAKEF-------------TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMT 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
D K GF+ F + A AV MNG K + V
Sbjct: 225 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Score = 38.5 bits (88), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITS----SSLVSDKHIGF--IEFIMPKHATHAVSTM 284
++V +L ++ + E F+ G I S +++ + +G+ + F P A A+ TM
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N V K KP+++ S P +
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSL 93
>sp|Q5R8F7|PABP1_PONAB Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1
Length = 636
Score = 150 bits (379), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 99/308 (32%), Positives = 165/308 (53%), Gaps = 23/308 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK + W + D R + N + + NL+ S+DN+AL + F FG +
Sbjct: 78 KGKPVRIMWSQ---RDPSLRKSGVGN-------IFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V ++N S+G+ + F T A++A +MNG L+ + V + + + +R +G
Sbjct: 128 CKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR-KEREAELGA 185
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
K++ V++KN E +D+E LK F KFG + VK++ DE+GKSKGFGF+ F ++
Sbjct: 186 RAKEFTN--VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A+KA+ EMNG+ + +V A+ K+ F ++K + + ++V NL
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 239 NINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
I++ + F+ FGTITS+ ++ + K GF+ F P+ AT AV+ MNG + +KPL
Sbjct: 304 GIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Query: 295 KVTLSGTK 302
V L+ K
Sbjct: 364 YVALAQRK 371
Score = 127 bits (320), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 86/279 (30%), Positives = 133/279 (47%), Gaps = 37/279 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L P L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KPV I + + P R VG +F+KNL +++D + L
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVG---------NIFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+GF+ F + +AAE+AI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N ++++ ++LF +FG S +++
Sbjct: 178 EREAELGARAKEF-------------TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMT 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
D K GF+ F + A AV MNG K + V
Sbjct: 225 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Score = 37.0 bits (84), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITS----SSLVSDKHIGF--IEFIMPKHATHAVSTM 284
++V +L + + E F+ G I S +++ + +G+ + F P A A+ TM
Sbjct: 13 LYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N V K KP+++ S P +
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSL 93
>sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=2
Length = 636
Score = 150 bits (379), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 99/308 (32%), Positives = 165/308 (53%), Gaps = 23/308 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK + W + D R + N + + NL+ S+DN+AL + F FG +
Sbjct: 78 KGKPVRIMWSQ---RDPSLRKSGVGN-------IFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V ++N S+G+ + F T A++A +MNG L+ + V + + + +R +G
Sbjct: 128 CKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR-KEREAELGA 185
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
K++ V++KN E +D+E LK F KFG + VK++ DE+GKSKGFGF+ F ++
Sbjct: 186 RAKEFTN--VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A+KA+ EMNG+ + +V A+ K+ F ++K + + ++V NL
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 239 NINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
I++ + F+ FGTITS+ ++ + K GF+ F P+ AT AV+ MNG + +KPL
Sbjct: 304 GIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Query: 295 KVTLSGTK 302
V L+ K
Sbjct: 364 YVALAQRK 371
Score = 130 bits (327), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 88/279 (31%), Positives = 134/279 (48%), Gaps = 37/279 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KPV I + + P R VG +F+KNL +++D + L
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVG---------NIFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+GF+ F + +AAE+AI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N ++++ +ELF +FG S +++
Sbjct: 178 EREAELGARAKEF-------------TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMT 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
D K GF+ F + A AV MNG K + V
Sbjct: 225 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Score = 38.5 bits (88), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITS----SSLVSDKHIGF--IEFIMPKHATHAVSTM 284
++V +L ++ + E F+ G I S +++ + +G+ + F P A A+ TM
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N V K KP+++ S P +
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSL 93
>sp|P20965|PABPA_XENLA Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-a
PE=1 SV=3
Length = 633
Score = 149 bits (375), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 91/275 (33%), Positives = 155/275 (56%), Gaps = 13/275 (4%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S+DN+AL + F FG + +V ++N S+G+ + F T A++A +MN
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMN 159
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G L+ + V + + + +R +G K++ V++KN + +++E LK F K+G
Sbjct: 160 GMLLNDRKVFVGRFKSR-KEREAELGARAKEFTN--VYIKNFGDDMNDERLKEMFGKYGP 216
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPG 211
+ VK++ D+NGKSKGFGF+ F ++ A+KA+ EMNG+ + S FV A+
Sbjct: 217 ALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQTEL 276
Query: 212 KKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIG 267
K+ F ++K + + ++V NL I++ + F FGTITS+ ++ + K G
Sbjct: 277 KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFLPFGTITSAKVMMEGGRSKGFG 336
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F+ F P+ AT AV+ MNG + +KPL V L+ K
Sbjct: 337 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 371
Score = 125 bits (315), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 85/279 (30%), Positives = 133/279 (47%), Gaps = 37/279 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I +PV I + + P R VG +F+KNL +++D + L
Sbjct: 68 ALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVG---------NIFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+GF+ F + +AAE+AI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N ++N+ +E+F ++G S +++
Sbjct: 178 EREAELGARAKEF-------------TNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMT 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
D K GF+ F + A AV MNG K + V
Sbjct: 225 DDNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFV 263
Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L+V NL+ +D++ L EF FGT+ +V + S+GF + F++P EA KA
Sbjct: 291 YQGVNLYVKNLDDGIDDERLRKEFLPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKA 349
Query: 92 RVEMNGHLIGSKPVIITFVELK 113
EMNG ++ +KP+ + + K
Sbjct: 350 VTEMNGRIVATKPLYVALAQRK 371
>sp|Q9H361|PABP3_HUMAN Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2
Length = 631
Score = 146 bits (368), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 100/309 (32%), Positives = 163/309 (52%), Gaps = 25/309 (8%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK + W + D R + N + V NL+ S++N+AL + FG +
Sbjct: 78 KGKPVRIMWSQ---RDPSLRKSGVGN-------IFVKNLDKSINNKALYDTVSAFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVII-TFVELKPGQRSKPVG 122
V ++N S+G+ + F T A++A +MNG L+ + V + F K +R +G
Sbjct: 128 CNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRK--EREAELG 184
Query: 123 PEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYK 182
K++ V++KN E +D+E LK F KFG + VK++ DE+GKSKGFGF+ F ++
Sbjct: 185 ARAKEFPN--VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 183 AAEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLP 237
A+KA+ EMNG+ + +V A+ K+ F ++K + + ++V NL
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLD 302
Query: 238 SNINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKP 293
I++ + F+ FGTITS+ ++ + K GF+ F P+ AT AV+ MNG + +KP
Sbjct: 303 DGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 362
Query: 294 LKVTLSGTK 302
L V L+ K
Sbjct: 363 LYVALAQRK 371
Score = 115 bits (289), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 83/279 (29%), Positives = 130/279 (46%), Gaps = 37/279 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F G + +R+ R+ S +A + F +A+
Sbjct: 8 YPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEH 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KPV I + + P R VG +FVKNL ++++ + L
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVG---------NIFVKNLDKSINNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
FGNI+ +V DENG SKG+GF+ F +++AAE+AI +MNG ++ FV
Sbjct: 119 VSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K FP V ++ N ++++ ++LF +FG S +++
Sbjct: 178 EREAELGARAKEFPNV-------------YIKNFGEDMDDERLKDLFGKFGPALSVKVMT 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
D K GF+ F + A AV MNG K + V
Sbjct: 225 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Score = 39.3 bits (90), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTM 284
++V +L ++ + E F+ G I S + D + ++ F K A HA+ TM
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDTM 72
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N V K KP+++ S P +
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSL 93
>sp|P0CB38|PAB4L_HUMAN Polyadenylate-binding protein 4-like OS=Homo sapiens GN=PABPC4L
PE=2 SV=1
Length = 370
Score = 146 bits (368), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 88/270 (32%), Positives = 146/270 (54%), Gaps = 13/270 (4%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+DN+ L F FG + +V + + S+G+A + F + A +A EMNG
Sbjct: 102 IKNLDKSIDNKTLYEHFSAFGKILSSKVMSD-DQGSKGYAFVHFQNQSAADRAIEEMNGK 160
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ V FV ++ + K + V++KN +D+E LK F K+G +
Sbjct: 161 LLKGCKV---FVGRFKNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTL 217
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKK 213
VK++ D +GKSKGFGF+ F S++AA+KA+ EMNGR I FV A+ K+
Sbjct: 218 SVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQ 277
Query: 214 VFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGFI 269
+F ++K ++ + K+++ NL I++ + F+ FG+I+ ++ + K G I
Sbjct: 278 MFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEEGQSKGFGLI 337
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299
F P+ AT A++ MNG + SKPL + L+
Sbjct: 338 CFSSPEDATKAMTEMNGRILGSKPLSIALA 367
Score = 99.4 bits (246), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 106/179 (59%), Gaps = 10/179 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+++ N +D++ L + F K+G V+V + + +S+GF + F++ AKKA EMN
Sbjct: 192 VYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMN 251
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKD--------KVFVKNLVETVDEEELK 148
G I + + + + K +R + +Q K++ K+++KNL +T+D+E+L+
Sbjct: 252 GRDINGQLIFVGRAQ-KKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLR 310
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
+ F FG+I VK++++E G+SKGFG I F S + A KA+ EMNGR++ ++LA+
Sbjct: 311 NEFSSFGSISRVKVMQEE-GQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSIALAQ 368
Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 53/76 (69%), Gaps = 1/76 (1%)
Query: 36 ELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEM 95
+L++ NL+ ++D++ L NEF FG++ V+V + + +S+GF +I F++P +A KA EM
Sbjct: 294 KLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEEG-QSKGFGLICFSSPEDATKAMTEM 352
Query: 96 NGHLIGSKPVIITFVE 111
NG ++GSKP+ I +
Sbjct: 353 NGRILGSKPLSIALAQ 368
>sp|Q7S6N6|PABP_NEUCR Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=pab-1 PE=3 SV=1
Length = 764
Score = 146 bits (368), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 86/268 (32%), Positives = 138/268 (51%), Gaps = 24/268 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+PSV L F + G++ +RV R+ S G+A + +NT A+ +KA E+
Sbjct: 62 LYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEEL 121
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI +P I + + P R G +F+KNL +D + L F FG
Sbjct: 122 NYTLIKGRPCRIMWSQRDPALRKTGAG---------NIFIKNLDAAIDNKALHDTFAAFG 172
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ +DE+G SKG+GF+ + + +AA +AI +NG ++ +V G +
Sbjct: 173 NILSCKVAQDEHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYV-------GHHIP 225
Query: 216 PKVKPPLLQPARKN--KIFVANLPSNINNSEFEELFARFGTITSSSLVSDKH-----IGF 268
K + + + N ++V N+ + + + EF ELFA+FG +TSSSL D+ GF
Sbjct: 226 KKDRQSKFEEMKANFTNVYVKNINNEVTDEEFRELFAKFGEVTSSSLARDQEGKSRGFGF 285
Query: 269 IEFIMPKHATHAVSTMNGHVFKSKPLKV 296
+ F + A AV +NG F+ + L V
Sbjct: 286 VNFTTHEAAAQAVDELNGKDFRGQDLYV 313
Score = 120 bits (300), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 83/317 (26%), Positives = 150/317 (47%), Gaps = 54/317 (17%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ ++DN+AL + F FG + +VA++++ S+G+ + + T A +A +N
Sbjct: 150 IFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEHGNSKGYGFVHYETDEAASQAIKHVN 209
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G L+ K V + K ++SK EE + V+VKN+ V +EE + F KFG
Sbjct: 210 GMLLNEKKVYVGHHIPKKDRQSKF---EEMKANFTNVYVKNINNEVTDEEFRELFAKFGE 266
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGK--KV 214
+ + RD+ GKS+GFGF+ F +++AA +A+ E+NG+ + +V A+ + ++
Sbjct: 267 VTSSSLARDQEGKSRGFGFVNFTTHEAAAQAVDELNGKDFRGQDLYVGRAQKKHEREEEL 326
Query: 215 FPKVKPPLLQPARKNK---IFVANLPSNINNSEFEELFARFGTITSSSLVSD-------- 263
+ L+ A K + +++ NL ++++ + +F+ +G ITS+ ++ D
Sbjct: 327 RKSYEAARLEKANKYQGVNLYIKNLGDDVDDDKLRAMFSEYGPITSAKVMRDSLIEGSEE 386
Query: 264 --------------------------------------KHIGFIEFIMPKHATHAVSTMN 285
K GF+ F P AT AV+ MN
Sbjct: 387 KDEKDKENKKEGETKEEEQNEGSEKKTEKKGDRKLGKSKGFGFVCFSNPDDATKAVTEMN 446
Query: 286 GHVFKSKPLKVTLSGTK 302
+ KPL V L+ K
Sbjct: 447 QRMVDGKPLYVALAQRK 463
Score = 40.4 bits (93), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 55/141 (39%), Gaps = 43/141 (30%)
Query: 20 EGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARN---------- 69
E AR K N Y+ L++ NL VD+ L F ++G + +V R+
Sbjct: 331 EAARLEKANK--YQGVNLYIKNLGDDVDDDKLRAMFSEYGPITSAKVMRDSLIEGSEEKD 388
Query: 70 ---------------------------KND----ESRGFAIIVFNTPAEAKKARVEMNGH 98
K D +S+GF + F+ P +A KA EMN
Sbjct: 389 EKDKENKKEGETKEEEQNEGSEKKTEKKGDRKLGKSKGFGFVCFSNPDDATKAVTEMNQR 448
Query: 99 LIGSKPVIITFVELKPGQRSK 119
++ KP+ + + K ++S+
Sbjct: 449 MVDGKPLYVALAQRKDVRKSQ 469
>sp|Q4VXU2|PAP1L_HUMAN Polyadenylate-binding protein 1-like OS=Homo sapiens GN=PABPC1L
PE=2 SV=1
Length = 614
Score = 145 bits (367), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 95/311 (30%), Positives = 167/311 (53%), Gaps = 29/311 (9%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KG+ + W + D G R + N + + NLE S+DN+AL + F FG +
Sbjct: 78 KGQPIRIMWSQ---RDPGLRKSGVGN-------IFIKNLEDSIDNKALYDTFSTFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+VA +++ SRGF + F T A++A MNG L+ + V + + + +R +G
Sbjct: 128 CKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSR-REREAELGA 185
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
++ ++VKNL VDE+ L+ F +FG ++ VK++RD +G S+ FGF+ F ++
Sbjct: 186 RALEFTN--IYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEE 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLA--------EIVPGKKVFPKVKPPLLQPARKNKIFVAN 235
A+KA++ MNG+ + + A E+ K+ F ++K L+ + ++V N
Sbjct: 244 AQKAVVHMNGKEVSGRLLYAGRAQKRVERQNEL---KRRFEQMKQDRLRRYQGVNLYVKN 300
Query: 236 LPSNINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKS 291
L +I++ + + F+ +G ITS+ ++++ K GF+ F P+ AT AV+ MNG + +
Sbjct: 301 LDDSIDDDKLRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGT 360
Query: 292 KPLKVTLSGTK 302
KPL V L+ K
Sbjct: 361 KPLYVALAQRK 371
Score = 128 bits (321), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 133/269 (49%), Gaps = 37/269 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F G + +RV R+ S G+A I F PA+A++
Sbjct: 8 YPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN ++ +P+ I + + PG R VG +F+KNL +++D + L
Sbjct: 68 ALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVG---------NIFIKNLEDSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+ DE+G S+GFGF+ F +++AA++AI MNG ++ FV
Sbjct: 119 FSTFGNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRR 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ G + I+V NLP +++ ++LF++FG + S ++
Sbjct: 178 EREAEL--GARAL-----------EFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMR 224
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNG 286
D + GF+ F + A AV MNG
Sbjct: 225 DNSGHSRCFGFVNFEKHEEAQKAVVHMNG 253
Score = 38.9 bits (89), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGF--IEFIMPKHATHAVSTM 284
++V +L ++ + E F+ G I S + D + +G+ I F P A A+ TM
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N + K +P+++ S PG+
Sbjct: 73 NFEMLKGQPIRIMWSQRDPGL 93
>sp|Q6IP09|PABPB_XENLA Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-b
PE=2 SV=1
Length = 633
Score = 145 bits (367), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 94/308 (30%), Positives = 165/308 (53%), Gaps = 23/308 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK + W + D R + N + + NL+ S+DN+AL + F FG +
Sbjct: 78 KGKPVRIMWSQ---RDPSLRKSGVGN-------IFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V ++N S+G+ + F T A++A +MNG L+ + V + + + +R +G
Sbjct: 128 CKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSR-KEREAELGA 185
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
K++ V++KN E +D+E LK F ++G + VK++ D++GKS+GFGF+ F ++
Sbjct: 186 RAKEFTN--VYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDHGKSRGFGFVSFERHED 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A+KA+ +MNG+ + + FV A+ K+ F ++K + + ++V NL
Sbjct: 244 AQKAVDDMNGKDLNGKAIFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 239 NINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
I++ + F FG+ITS+ ++ + K GF+ F P+ AT AV+ MNG + +KPL
Sbjct: 304 GIDDERLRKEFTPFGSITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Query: 295 KVTLSGTK 302
V L+ K
Sbjct: 364 YVALAQRK 371
Score = 129 bits (325), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 86/279 (30%), Positives = 133/279 (47%), Gaps = 37/279 (13%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F G + +RV R+ S G+A + F PA+A++
Sbjct: 8 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I KPV I + + P R VG +F+KNL +++D + L
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVG---------NIFIKNLDKSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DENG SKG+GF+ F + +AAE+AI +MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRK 177
Query: 206 ---AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
AE+ K F +++ N ++++ +E F ++G S +++
Sbjct: 178 EREAELGARAKEF-------------TNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMT 224
Query: 263 DKH-----IGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
D H GF+ F + A AV MNG K + V
Sbjct: 225 DDHGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFV 263
Score = 38.5 bits (88), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITS----SSLVSDKHIGF--IEFIMPKHATHAVSTM 284
++V +L ++ + E F+ G I S +++ + +G+ + F P A A+ TM
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N V K KP+++ S P +
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSL 93
>sp|Q6DEY7|EPAB_XENTR Embryonic polyadenylate-binding protein OS=Xenopus tropicalis
GN=epabp PE=2 SV=1
Length = 629
Score = 144 bits (364), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 94/311 (30%), Positives = 164/311 (52%), Gaps = 29/311 (9%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KG+ + W + D G R + N + + NL+ S+DN+AL + F FG +
Sbjct: 78 KGRPIRIMWSQ---RDPGLRKSGVGN-------VFIKNLDESIDNKALYDTFSAFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V +++ SRG+ + F T A +A MNG L+ + V FV +R + +
Sbjct: 128 CKVVCDEHG-SRGYGFVHFETQEAANRAIQTMNGMLLNDRKV---FVGHFKSRRERELEY 183
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
K + V++KN E +D++ L+ F FGN + VK++ D+ G+S+GFGF+ + +++
Sbjct: 184 GAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDTGRSRGFGFVNYGNHEE 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLA--------EIVPGKKVFPKVKPPLLQPARKNKIFVAN 235
A+KA+ EMNG+ + +V A E+ K+ F ++K + + ++V N
Sbjct: 244 AQKAVSEMNGKEVNGRMIYVGRAQKRIERQGEL---KRKFEQIKQERINRYQGVNLYVKN 300
Query: 236 LPSNINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKS 291
L I++ + F+ +GTITS+ ++++ K GF+ F P+ AT AV+ MNG + +
Sbjct: 301 LDDGIDDDRLRKEFSPYGTITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVST 360
Query: 292 KPLKVTLSGTK 302
KPL V L+ K
Sbjct: 361 KPLYVALAQRK 371
Score = 125 bits (314), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 83/267 (31%), Positives = 129/267 (48%), Gaps = 33/267 (12%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKK 90
Y L+V +L P V L +F G + +RV R+ S G+A I F PA+A++
Sbjct: 8 YPLASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I +P+ I + + PG R VG VF+KNL E++D + L
Sbjct: 68 ALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVG---------NVFIKNLDESIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DE+G S+G+GF+ F + +AA +AI MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDEHG-SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRR 177
Query: 206 -AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD- 263
E+ G KV +++ N ++++ E+F+ FG S ++ D
Sbjct: 178 ERELEYGAKVM-----------EFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDD 226
Query: 264 ----KHIGFIEFIMPKHATHAVSTMNG 286
+ GF+ + + A AVS MNG
Sbjct: 227 TGRSRGFGFVNYGNHEEAQKAVSEMNG 253
Score = 40.8 bits (94), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGF--IEFIMPKHATHAVSTM 284
++V +L ++ + E F+ G I S + D + +G+ I F P A A+ TM
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTM 72
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N V K +P+++ S PG+
Sbjct: 73 NFEVIKGRPIRIMWSQRDPGL 93
>sp|Q6GR16|EPABB_XENLA Embryonic polyadenylate-binding protein B OS=Xenopus laevis
GN=epabp-b PE=2 SV=1
Length = 629
Score = 144 bits (363), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 95/311 (30%), Positives = 163/311 (52%), Gaps = 29/311 (9%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KG+ + W + D G R + N + + NL+ S+DN+AL + F FG +
Sbjct: 78 KGRPIRIMWSQ---RDPGLRKSGVGN-------VFIKNLDDSIDNKALYDTFSAFGDILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V ++ SRG+ + F T A +A MNG L+ + V FV +R + +
Sbjct: 128 CKVVCDEYG-SRGYGFVHFETQEAANRAIQTMNGMLLNDRKV---FVGHFKSRRERELEY 183
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
K + V++KN E +D++ LK F FGN + VK++ D +G+S+GFGF+ + +++
Sbjct: 184 GAKVMEFTNVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDNSGRSRGFGFVNYGNHEE 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLA--------EIVPGKKVFPKVKPPLLQPARKNKIFVAN 235
A+KA+ EMNG+ + +V A E+ K+ F ++K + + ++V N
Sbjct: 244 AQKAVTEMNGKEVNGRMVYVGRAQKRIERQGEL---KRKFEQIKQERINRYQGVNLYVKN 300
Query: 236 LPSNINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKS 291
L I++ + F+ +GTITS+ ++++ K GF+ F P+ AT AV+ MNG + +
Sbjct: 301 LDDGIDDDRLRKEFSPYGTITSTKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVST 360
Query: 292 KPLKVTLSGTK 302
KPL V L+ K
Sbjct: 361 KPLYVALAQRK 371
Score = 120 bits (300), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 79/267 (29%), Positives = 129/267 (48%), Gaps = 33/267 (12%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKK 90
Y L++ +L P V L +F G + +RV R+ S G+A I F PA+A++
Sbjct: 8 YPLASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I +P+ I + + PG R VG VF+KNL +++D + L
Sbjct: 68 ALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVG---------NVFIKNLDDSIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FG+I+ K+V DE G S+G+GF+ F + +AA +AI MNG ++ FV
Sbjct: 119 FSAFGDILSCKVVCDEYG-SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRR 177
Query: 206 -AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD- 263
E+ G KV +++ N ++++ +E+F+ FG S ++ D
Sbjct: 178 ERELEYGAKVM-----------EFTNVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDN 226
Query: 264 ----KHIGFIEFIMPKHATHAVSTMNG 286
+ GF+ + + A AV+ MNG
Sbjct: 227 SGRSRGFGFVNYGNHEEAQKAVTEMNG 253
Score = 40.4 bits (93), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGF--IEFIMPKHATHAVSTM 284
+++ +L ++ + E F+ G I S + D + +G+ I F P A A+ TM
Sbjct: 13 LYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTM 72
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N V K +P+++ S PG+
Sbjct: 73 NFEVIKGRPIRIMWSQRDPGL 93
>sp|Q98SP8|EPABA_XENLA Embryonic polyadenylate-binding protein A OS=Xenopus laevis
GN=epabp-a PE=1 SV=2
Length = 629
Score = 144 bits (363), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 93/308 (30%), Positives = 163/308 (52%), Gaps = 23/308 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KG+ + W + D G R + N + + NL+ S+DN+AL + F FG +
Sbjct: 78 KGRPIRIMWSQ---RDPGLRKSGVGN-------VFIKNLDESIDNKALYDTFSAFGNILS 127
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V +++ SRG+ + F T A +A MNG L+ + V FV +R + +
Sbjct: 128 CKVVCDEHG-SRGYGFVHFETHEAANRAIQTMNGMLLNDRKV---FVGHFKSRRERELEY 183
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
K + V++KN E +D++ L+ F FGN + VK++ D++G+S+GFGF+ + +++
Sbjct: 184 GAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDSGRSRGFGFVNYGNHEE 243
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A+KA+ EMNG+ + +V A+ K+ F ++K + + ++V NL
Sbjct: 244 AQKAVSEMNGKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQGVNLYVKNLDD 303
Query: 239 NINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
I++ + F +GTITS+ ++++ K GF+ F P+ AT AV+ MNG + +KPL
Sbjct: 304 GIDDDRLRKEFLPYGTITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPL 363
Query: 295 KVTLSGTK 302
V L+ K
Sbjct: 364 YVALAQRK 371
Score = 124 bits (310), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 81/267 (30%), Positives = 129/267 (48%), Gaps = 33/267 (12%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKK 90
Y L++ +L P V L +F G + +RV R+ S +A I F PA+A++
Sbjct: 8 YPLASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAER 67
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
A MN +I +P+ I + + PG R VG VF+KNL E++D + L
Sbjct: 68 ALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVG---------NVFIKNLDESIDNKALYDT 118
Query: 151 FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL----- 205
F FGNI+ K+V DE+G S+G+GF+ F +++AA +AI MNG ++ FV
Sbjct: 119 FSAFGNILSCKVVCDEHG-SRGYGFVHFETHEAANRAIQTMNGMLLNDRKVFVGHFKSRR 177
Query: 206 -AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD- 263
E+ G KV +++ N ++++ E+F+ FG S ++ D
Sbjct: 178 ERELEYGAKVM-----------EFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDD 226
Query: 264 ----KHIGFIEFIMPKHATHAVSTMNG 286
+ GF+ + + A AVS MNG
Sbjct: 227 SGRSRGFGFVNYGNHEEAQKAVSEMNG 253
Score = 39.3 bits (90), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTM 284
+++ +L ++ + E F+ G I S + D +I F P A A+ TM
Sbjct: 13 LYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALDTM 72
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N V K +P+++ S PG+
Sbjct: 73 NFEVIKGRPIRIMWSQRDPGL 93
>sp|Q7JGR2|PABP5_MACMU Polyadenylate-binding protein 5 OS=Macaca mulatta GN=PABPC5 PE=3
SV=1
Length = 382
Score = 137 bits (346), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 90/285 (31%), Positives = 157/285 (55%), Gaps = 32/285 (11%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S+DN+AL F FG + +V + N S+G+A + F++ A A +A MN
Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMN 166
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G + ++ V + + P +R+ V ++ + VFVKN+ + +D+E+LK F ++G
Sbjct: 167 GVRLNNRQVYVGRFKF-PEERAAEVRTRDRATFTN-VFVKNIGDDIDDEKLKELFCEYGP 224
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF- 215
VK++RD +GKSKGFGF+++ +++AA+KA+++++G+ I +V A+ KK+
Sbjct: 225 TESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQ----KKIER 280
Query: 216 --------------PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLV 261
K +PP + I++ NL IN+ + +E F+ FG+I+ + ++
Sbjct: 281 LAELRRRFERLRLKEKSRPPGVP------IYIKNLDETINDEKLKEEFSSFGSISRAKVM 334
Query: 262 SD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
+ K G + F + AT AV MNG V SKPL VTL +
Sbjct: 335 MEVGQGKGFGVVCFSSFEEATKAVDEMNGRVVGSKPLHVTLGQAR 379
Score = 112 bits (280), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 80/267 (29%), Positives = 128/267 (47%), Gaps = 26/267 (9%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDES-RGFAIIVFNTPAEAKKARVEMNG 97
V +L+P V L +F+ G LR R+ R+ S G+ + F PA+A+ A MN
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 98 HLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNI 157
LI KP + + + R VG +F+KNL +++D L F FGNI
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVG---------NIFIKNLDKSIDNRALFYLFSAFGNI 132
Query: 158 IEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPK 217
+ K+V D+NG SKG+ ++ F S AA +AI MNG + + +V G+ FP+
Sbjct: 133 LSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYV-------GRFKFPE 184
Query: 218 VKPPLLQP---ARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFI 269
+ ++ A +FV N+ +I++ + +ELF +G S ++ D K GF+
Sbjct: 185 ERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFV 244
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKV 296
+ + A AV ++G K L V
Sbjct: 245 RYETHEAAQKAVLDLHGKSIDGKVLYV 271
>sp|Q6CSV3|PABP_KLULA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=PAB1 PE=3
SV=1
Length = 592
Score = 137 bits (346), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 90/277 (32%), Positives = 147/277 (53%), Gaps = 15/277 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL P++DN+AL F FG + +VA ++N SRGF + F ++AK A +N
Sbjct: 140 IFIKNLHPAIDNKALHETFSTFGEVLSCKVALDENGNSRGFGFVHFKEESDAKDAIEAVN 199
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNL-VETVDEEELKSHFIKFG 155
G L+ V + K + SK EE + ++VKN+ VET DEE + F ++G
Sbjct: 200 GMLMNGLEVYVAMHVPKKDRISKL---EEAKANFTNIYVKNIDVETTDEE-FEQLFSQYG 255
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVP 210
I+ + +D GK KGFGF+ F + AA KA+ E+NG+ + + +V A+
Sbjct: 256 EIVSAALEKDAEGKPKGFGFVNFVDHNAAAKAVEELNGKEFKSQALYVGRAQKKYERAEE 315
Query: 211 GKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KH 265
KK + + + L + +F+ NL +I++ + +E FA +GTITS+ ++ D K
Sbjct: 316 LKKQYEQYRLEKLAKFQGVNLFIKNLDDSIDDEKLKEEFAPYGTITSARVMRDQEGNSKG 375
Query: 266 IGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ F P+ AT A++ N + KPL V ++ K
Sbjct: 376 FGFVCFSSPEEATKAMTEKNQQIVAGKPLYVAIAQRK 412
Score = 129 bits (323), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 88/268 (32%), Positives = 131/268 (48%), Gaps = 24/268 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+P++ L + F G + +RV R+ S G+A + + KKA E+
Sbjct: 52 LYVGELDPNITEALLYDVFSPLGPISSIRVCRDAVTKASLGYAYVNYTDYEAGKKAIQEL 111
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N I +P I + E P R K G +F+KNL +D + L F FG
Sbjct: 112 NYAEINGRPCRIMWSERDPAIRKKGSG---------NIFIKNLHPAIDNKALHETFSTFG 162
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
++ K+ DENG S+GFGF+ F A+ AI +NG ++ N V +A VP K
Sbjct: 163 EVLSCKVALDENGNSRGFGFVHFKEESDAKDAIEAVNGMLM--NGLEVYVAMHVPKKDRI 220
Query: 216 PKVKPPLLQPARKN--KIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGF 268
K L+ A+ N I+V N+ + EFE+LF+++G I S++L D K GF
Sbjct: 221 SK-----LEEAKANFTNIYVKNIDVETTDEEFEQLFSQYGEIVSAALEKDAEGKPKGFGF 275
Query: 269 IEFIMPKHATHAVSTMNGHVFKSKPLKV 296
+ F+ A AV +NG FKS+ L V
Sbjct: 276 VNFVDHNAAAKAVEELNGKEFKSQALYV 303
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 49/83 (59%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L + NL+ S+D++ L EF +GT+ RV R++ S+GF + F++P EA KA E N
Sbjct: 336 LFIKNLDDSIDDEKLKEEFAPYGTITSARVMRDQEGNSKGFGFVCFSSPEEATKAMTEKN 395
Query: 97 GHLIGSKPVIITFVELKPGQRSK 119
++ KP+ + + K +RS+
Sbjct: 396 QQIVAGKPLYVAIAQRKDVRRSQ 418
>sp|P60050|PABP5_PONPY Polyadenylate-binding protein 5 OS=Pongo pygmaeus GN=PABPC5 PE=3
SV=1
Length = 382
Score = 137 bits (345), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 89/285 (31%), Positives = 157/285 (55%), Gaps = 32/285 (11%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S+DN+AL F FG + +V + N S+G+A + F++ A A +A MN
Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMN 166
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G + ++ V + + P +R+ V ++ + VFVKN+ + +D+E+LK F ++G
Sbjct: 167 GVRLNNRQVYVGRFKF-PEERAAEVRTRDRATFTN-VFVKNIGDDIDDEKLKELFCEYGP 224
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF- 215
VK++RD +GKSKGFGF+++ +++AA+KA+++++G+ I +V A+ KK+
Sbjct: 225 TESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQ----KKIER 280
Query: 216 --------------PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLV 261
K +PP + I++ NL IN+ + +E F+ FG+I+ + ++
Sbjct: 281 LAELRRRFERLRLKEKSRPPGVP------IYIKNLDETINDEKLKEEFSSFGSISRAKVM 334
Query: 262 SD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
+ K G + F + AT AV MNG + SKPL VTL +
Sbjct: 335 MEVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQAR 379
Score = 112 bits (280), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 80/267 (29%), Positives = 128/267 (47%), Gaps = 26/267 (9%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDES-RGFAIIVFNTPAEAKKARVEMNG 97
V +L+P V L +F+ G LR R+ R+ S G+ + F PA+A+ A MN
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 98 HLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNI 157
LI KP + + + R VG +F+KNL +++D L F FGNI
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVG---------NIFIKNLDKSIDNRALFYLFSAFGNI 132
Query: 158 IEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPK 217
+ K+V D+NG SKG+ ++ F S AA +AI MNG + + +V G+ FP+
Sbjct: 133 LSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYV-------GRFKFPE 184
Query: 218 VKPPLLQP---ARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFI 269
+ ++ A +FV N+ +I++ + +ELF +G S ++ D K GF+
Sbjct: 185 ERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFV 244
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKV 296
+ + A AV ++G K L V
Sbjct: 245 RYETHEAAQKAVLDLHGKSIDGKVLYV 271
>sp|P60049|PABP5_PANTR Polyadenylate-binding protein 5 OS=Pan troglodytes GN=PABPC5 PE=3
SV=1
Length = 382
Score = 137 bits (345), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 89/285 (31%), Positives = 157/285 (55%), Gaps = 32/285 (11%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S+DN+AL F FG + +V + N S+G+A + F++ A A +A MN
Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMN 166
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G + ++ V + + P +R+ V ++ + VFVKN+ + +D+E+LK F ++G
Sbjct: 167 GVRLNNRQVYVGRFKF-PEERAAEVRTRDRATFTN-VFVKNIGDDIDDEKLKELFCEYGP 224
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF- 215
VK++RD +GKSKGFGF+++ +++AA+KA+++++G+ I +V A+ KK+
Sbjct: 225 TESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQ----KKIER 280
Query: 216 --------------PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLV 261
K +PP + I++ NL IN+ + +E F+ FG+I+ + ++
Sbjct: 281 LAELRRRFERLRLKEKSRPPGVP------IYIKNLDETINDEKLKEEFSSFGSISRAKVM 334
Query: 262 SD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
+ K G + F + AT AV MNG + SKPL VTL +
Sbjct: 335 MEVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQAR 379
Score = 112 bits (280), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 80/267 (29%), Positives = 128/267 (47%), Gaps = 26/267 (9%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDES-RGFAIIVFNTPAEAKKARVEMNG 97
V +L+P V L +F+ G LR R+ R+ S G+ + F PA+A+ A MN
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 98 HLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNI 157
LI KP + + + R VG +F+KNL +++D L F FGNI
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVG---------NIFIKNLDKSIDNRALFYLFSAFGNI 132
Query: 158 IEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPK 217
+ K+V D+NG SKG+ ++ F S AA +AI MNG + + +V G+ FP+
Sbjct: 133 LSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYV-------GRFKFPE 184
Query: 218 VKPPLLQP---ARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFI 269
+ ++ A +FV N+ +I++ + +ELF +G S ++ D K GF+
Sbjct: 185 ERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFV 244
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKV 296
+ + A AV ++G K L V
Sbjct: 245 RYETHEAAQKAVLDLHGKSIDGKVLYV 271
>sp|P60048|PABP5_HYLLA Polyadenylate-binding protein 5 OS=Hylobates lar GN=PABPC5 PE=3
SV=1
Length = 382
Score = 137 bits (345), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 89/285 (31%), Positives = 157/285 (55%), Gaps = 32/285 (11%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S+DN+AL F FG + +V + N S+G+A + F++ A A +A MN
Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMN 166
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G + ++ V + + P +R+ V ++ + VFVKN+ + +D+E+LK F ++G
Sbjct: 167 GVRLNNRQVYVGRFKF-PEERAAEVRTRDRATFTN-VFVKNIGDDIDDEKLKELFCEYGP 224
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF- 215
VK++RD +GKSKGFGF+++ +++AA+KA+++++G+ I +V A+ KK+
Sbjct: 225 TESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQ----KKIER 280
Query: 216 --------------PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLV 261
K +PP + I++ NL IN+ + +E F+ FG+I+ + ++
Sbjct: 281 LAELRRRFERLRLKEKSRPPGVP------IYIKNLDETINDEKLKEEFSSFGSISRAKVM 334
Query: 262 SD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
+ K G + F + AT AV MNG + SKPL VTL +
Sbjct: 335 MEVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQAR 379
Score = 112 bits (280), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 80/267 (29%), Positives = 128/267 (47%), Gaps = 26/267 (9%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDES-RGFAIIVFNTPAEAKKARVEMNG 97
V +L+P V L +F+ G LR R+ R+ S G+ + F PA+A+ A MN
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 98 HLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNI 157
LI KP + + + R VG +F+KNL +++D L F FGNI
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVG---------NIFIKNLDKSIDNRALFYLFSAFGNI 132
Query: 158 IEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPK 217
+ K+V D+NG SKG+ ++ F S AA +AI MNG + + +V G+ FP+
Sbjct: 133 LSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYV-------GRFKFPE 184
Query: 218 VKPPLLQP---ARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFI 269
+ ++ A +FV N+ +I++ + +ELF +G S ++ D K GF+
Sbjct: 185 ERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFV 244
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKV 296
+ + A AV ++G K L V
Sbjct: 245 RYETHEAAQKAVLDLHGKSIDGKVLYV 271
>sp|Q96DU9|PABP5_HUMAN Polyadenylate-binding protein 5 OS=Homo sapiens GN=PABPC5 PE=2 SV=1
Length = 382
Score = 137 bits (345), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 89/285 (31%), Positives = 157/285 (55%), Gaps = 32/285 (11%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S+DN+AL F FG + +V + N S+G+A + F++ A A +A MN
Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMN 166
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G + ++ V + + P +R+ V ++ + VFVKN+ + +D+E+LK F ++G
Sbjct: 167 GVRLNNRQVYVGRFKF-PEERAAEVRTRDRATFTN-VFVKNIGDDIDDEKLKELFCEYGP 224
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF- 215
VK++RD +GKSKGFGF+++ +++AA+KA+++++G+ I +V A+ KK+
Sbjct: 225 TESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQ----KKIER 280
Query: 216 --------------PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLV 261
K +PP + I++ NL IN+ + +E F+ FG+I+ + ++
Sbjct: 281 LAELRRRFERLRLKEKSRPPGVP------IYIKNLDETINDEKLKEEFSSFGSISRAKVM 334
Query: 262 SD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
+ K G + F + AT AV MNG + SKPL VTL +
Sbjct: 335 MEVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQAR 379
Score = 112 bits (280), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 80/267 (29%), Positives = 128/267 (47%), Gaps = 26/267 (9%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDES-RGFAIIVFNTPAEAKKARVEMNG 97
V +L+P V L +F+ G LR R+ R+ S G+ + F PA+A+ A MN
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 98 HLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNI 157
LI KP + + + R VG +F+KNL +++D L F FGNI
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVG---------NIFIKNLDKSIDNRALFYLFSAFGNI 132
Query: 158 IEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPK 217
+ K+V D+NG SKG+ ++ F S AA +AI MNG + + +V G+ FP+
Sbjct: 133 LSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYV-------GRFKFPE 184
Query: 218 VKPPLLQP---ARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFI 269
+ ++ A +FV N+ +I++ + +ELF +G S ++ D K GF+
Sbjct: 185 ERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFV 244
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKV 296
+ + A AV ++G K L V
Sbjct: 245 RYETHEAAQKAVLDLHGKSIDGKVLYV 271
>sp|P60047|PABP5_GORGO Polyadenylate-binding protein 5 OS=Gorilla gorilla gorilla
GN=PABPC5 PE=3 SV=1
Length = 382
Score = 137 bits (345), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 89/285 (31%), Positives = 157/285 (55%), Gaps = 32/285 (11%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S+DN+AL F FG + +V + N S+G+A + F++ A A +A MN
Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMN 166
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G + ++ V + + P +R+ V ++ + VFVKN+ + +D+E+LK F ++G
Sbjct: 167 GVRLNNRQVYVGRFKF-PEERAAEVRTRDRATFTN-VFVKNIGDDIDDEKLKELFCEYGP 224
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF- 215
VK++RD +GKSKGFGF+++ +++AA+KA+++++G+ I +V A+ KK+
Sbjct: 225 TESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQ----KKIER 280
Query: 216 --------------PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLV 261
K +PP + I++ NL IN+ + +E F+ FG+I+ + ++
Sbjct: 281 LAELRRRFERLRLKEKSRPPGVP------IYIKNLDETINDEKLKEEFSSFGSISRAKVM 334
Query: 262 SD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
+ K G + F + AT AV MNG + SKPL VTL +
Sbjct: 335 MEVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQAR 379
Score = 112 bits (280), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 80/267 (29%), Positives = 128/267 (47%), Gaps = 26/267 (9%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDES-RGFAIIVFNTPAEAKKARVEMNG 97
V +L+P V L +F+ G LR R+ R+ S G+ + F PA+A+ A MN
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 98 HLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNI 157
LI KP + + + R VG +F+KNL +++D L F FGNI
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVG---------NIFIKNLDKSIDNRALFYLFSAFGNI 132
Query: 158 IEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPK 217
+ K+V D+NG SKG+ ++ F S AA +AI MNG + + +V G+ FP+
Sbjct: 133 LSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYV-------GRFKFPE 184
Query: 218 VKPPLLQP---ARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFI 269
+ ++ A +FV N+ +I++ + +ELF +G S ++ D K GF+
Sbjct: 185 ERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFV 244
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKV 296
+ + A AV ++G K L V
Sbjct: 245 RYETHEAAQKAVLDLHGKSIDGKVLYV 271
>sp|P21187|PABP_DROME Polyadenylate-binding protein OS=Drosophila melanogaster GN=pAbp
PE=1 SV=3
Length = 634
Score = 137 bits (345), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 92/276 (33%), Positives = 149/276 (53%), Gaps = 16/276 (5%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ ++DN+A+ + F FG + +VA ++ S+G+ + F T A + ++NG
Sbjct: 94 IKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGNSKGYGFVHFETEEAANTSIDKVNGM 153
Query: 99 LIGSKPVII-TFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNI 157
L+ K V + F+ K +R K +G + K + V+VKN E D+E+LK F +G I
Sbjct: 154 LLNGKKVYVGKFIPRK--EREKELGEKAKLFTN--VYVKNFTEDFDDEKLKEFFEPYGKI 209
Query: 158 IEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGR-MIQHNSTFVSLAEIVPGKKVFP 216
K++ E+GKSKGFGF+ F + +AAE A+ +NG+ M + S +V+ A+ ++
Sbjct: 210 TSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQQEL 269
Query: 217 KVKPPLLQPARKNKIF-----VANLPSNINNSEFEELFARFGTITSSSLVSD-----KHI 266
K K L+ R +F V NL I++ F+ +G ITS+ +++D K
Sbjct: 270 KRKFEELKQKRHESVFGVNLYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDEEGRSKGF 329
Query: 267 GFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ F AT AV+ +NG V SKPL V L+ K
Sbjct: 330 GFVCFNAASEATCAVTELNGRVVGSKPLYVALAQRK 365
Score = 117 bits (293), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 78/258 (30%), Positives = 130/258 (50%), Gaps = 24/258 (9%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L V+ L ++F G + +RV R+ S G+A + F PA+A++A M
Sbjct: 4 LYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTM 63
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N L+ +KP+ I + + P R VG VF+KNL +D + + F FG
Sbjct: 64 NFDLVRNKPIRIMWSQRDPSLRRSGVG---------NVFIKNLDRAIDNKAIYDTFSAFG 114
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ DE G SKG+GF+ F + +AA +I ++NG ++ N V + + +P K+
Sbjct: 115 NILSCKVATDEKGNSKGYGFVHFETEEAANTSIDKVNGMLL--NGKKVYVGKFIPRKERE 172
Query: 216 PKV--KPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS-----DKHIGF 268
++ K L ++V N + ++ + +E F +G ITS ++S K GF
Sbjct: 173 KELGEKAKLF-----TNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGF 227
Query: 269 IEFIMPKHATHAVSTMNG 286
+ F + A AV +NG
Sbjct: 228 VAFETTEAAEAAVQALNG 245
Score = 96.3 bits (238), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 64/224 (28%), Positives = 108/224 (48%), Gaps = 21/224 (9%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
++V N D++ L F+ +G + +V ++ +S+GF + F T A+ A +N
Sbjct: 185 VYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALN 244
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVG---PEEKQYKKDKVF-----VKNLVETVDEEELK 148
G +G + K +R + + E KQ + + VF VKNL +T+D++ L+
Sbjct: 245 GKDMGEGKSLYVARAQKKAERQQELKRKFEELKQKRHESVFGVNLYVKNLDDTIDDDRLR 304
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEI 208
F +GNI K++ DE G+SKGFGF+ F + A A+ E+NGR++ +V+LA+
Sbjct: 305 IAFSPYGNITSAKVMTDEEGRSKGFGFVCFNAASEATCAVTELNGRVVGSKPLYVALAQR 364
Query: 209 VPGKKVFPKVK-------------PPLLQPARKNKIFVANLPSN 239
+K + + QP + FV LPSN
Sbjct: 365 KEERKAHLASQYMRHMTGMRMQQLGQIYQPNAASGFFVPTLPSN 408
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 42/81 (51%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGF--IEFIMPKHATHAVSTM 284
++V +LP ++N S + F+ G + S + D + +G+ + F P A A+ TM
Sbjct: 4 LYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTM 63
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N + ++KP+++ S P +
Sbjct: 64 NFDLVRNKPIRIMWSQRDPSL 84
>sp|Q2GSX8|PABP_CHAGB Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 /
DSM 1962 / NBRC 6347 / NRRL 1970) GN=PAB1 PE=3 SV=1
Length = 783
Score = 136 bits (343), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 86/269 (31%), Positives = 136/269 (50%), Gaps = 26/269 (9%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+PSV L F + G++ +RV R+ S G+A + +N+ ++ +KA E+
Sbjct: 67 LYVGELDPSVTEAMLFELFSQIGSVASIRVCRDTITRRSLGYAYVNYNSTSDGEKALEEL 126
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI +P I + + P R G VF+KNL +D + L F FG
Sbjct: 127 NYTLIKGRPCRIMWSQRDPALRKTGQG---------NVFIKNLDVAIDNKALHDTFAAFG 177
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKV- 214
NI+ K+ +DENG SKG+GF+ + + +AA +AI +N ++ +V +P K
Sbjct: 178 NILSCKVAQDENGNSKGYGFVHYETDEAAAQAIKHVNNMLLNEKKVYVGYH--IPKKDRQ 235
Query: 215 --FPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIG 267
F ++K A I+V N+ + EF +LFA++G +TSSSL D + G
Sbjct: 236 SKFEEMK------ANFTNIYVKNISLEATDEEFRDLFAKYGDVTSSSLARDSEGKSRGFG 289
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
F+ F + A AV +NG F+ + L V
Sbjct: 290 FVNFTTHECAAKAVEELNGKEFRGQDLYV 318
Score = 117 bits (294), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 89/360 (24%), Positives = 160/360 (44%), Gaps = 80/360 (22%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KG+ W + D R + N + + NL+ ++DN+AL + F FG +
Sbjct: 132 KGRPCRIMWSQ---RDPALRKTGQGN-------VFIKNLDVAIDNKALHDTFAAFGNILS 181
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+VA+++N S+G+ + + T A +A +N L+ K V + + K ++SK
Sbjct: 182 CKVAQDENGNSKGYGFVHYETDEAAAQAIKHVNNMLLNEKKVYVGYHIPKKDRQSKF--- 238
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
EE + ++VKN+ +EE + F K+G++ + RD GKS+GFGF+ F +++
Sbjct: 239 EEMKANFTNIYVKNISLEATDEEFRDLFAKYGDVTSSSLARDSEGKSRGFGFVNFTTHEC 298
Query: 184 AEKAIIEMNGRMIQHNSTFVSLA--------EIVPGKKVFPKVKPPLLQPARKNK---IF 232
A KA+ E+NG+ + +V A E+ +K + + L+ A K + ++
Sbjct: 299 AAKAVEELNGKEFRGQDLYVGRAQKKHEREEEL---RKSYEAAR---LEKANKYQGVNLY 352
Query: 233 VANLPSNINNSEFEELFARFGTITSSSLVSD----------------------------- 263
+ NL +I++ + ++F+ +G ITS+ ++ D
Sbjct: 353 IKNLADDIDDDKLRQMFSEYGPITSAKVMRDAVTEGSAEEETEGKDKENKKEGEQAAEAE 412
Query: 264 ---------------------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
K GF+ F P AT AV+ MN + + KPL V L+ K
Sbjct: 413 GEAEGAEKKTEKKGDRRLGKSKGFGFVCFSNPDDATKAVAEMNQRMIEGKPLYVALAQRK 472
>sp|A5DW14|PABP_LODEL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS
2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) GN=PAB1 PE=3
SV=1
Length = 661
Score = 136 bits (343), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 97/309 (31%), Positives = 153/309 (49%), Gaps = 23/309 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
+G+ W + D AR + + N + + NL P++DN+AL + F FG +
Sbjct: 134 EGRPCRIMWSQ---RDPSARRSGDGN-------IFIKNLHPAIDNKALHDTFSAFGKILS 183
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
V+VA + +S+ F + + T A+ A +NG L+ + V + K + SK
Sbjct: 184 VKVATDDLGQSKCFGFVHYETEEAAQAAIESVNGMLLNDREVYVGKHVSKKDRESKL--- 240
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
EE + ++VKN+ E+E + F FG I + + +D GKSKGFGF+ F ++A
Sbjct: 241 EEMKANYTNIYVKNIDLAYTEKEFEELFAPFGKITSIYLEKDAEGKSKGFGFVNFEEHEA 300
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A KA+ E+N + I +V A+ KK + V+ L + +FV NL
Sbjct: 301 AAKAVEELNDKEINGQKIYVGRAQKKRERTEELKKQYEAVRLEKLSKYQGVNLFVKNLDE 360
Query: 239 NINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKP 293
I++ + EE F FGTITSS ++ D K GF+ F P+ AT A++ MN + KP
Sbjct: 361 QIDSEKLEEEFKPFGTITSSKVMVDDAGKSKGFGFVCFSTPEEATKAITEMNQRMVNGKP 420
Query: 294 LKVTLSGTK 302
L V L+ K
Sbjct: 421 LYVALAQRK 429
Score = 113 bits (283), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 81/257 (31%), Positives = 124/257 (48%), Gaps = 24/257 (9%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L PSV+ L F G + +RV R+ + +S G+A + ++ + +KA E+
Sbjct: 69 LYVGELNPSVNEATLFEIFSPIGQVASIRVCRDAVSKKSLGYAYVNYHKLEDGEKAIEEL 128
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N + +P I + + P R G +F+KNL +D + L F FG
Sbjct: 129 NYTPVEGRPCRIMWSQRDPSARRSGDG---------NIFIKNLHPAIDNKALHDTFSAFG 179
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
I+ VK+ D+ G+SK FGF+ + + +AA+ AI +NG ++ +V GK V
Sbjct: 180 KILSVKVATDDLGQSKCFGFVHYETEEAAQAAIESVNGMLLNDREVYV-------GKHVS 232
Query: 216 PKVKPPLLQPARKN--KIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGF 268
K + L+ + N I+V N+ EFEELFA FG ITS L D K GF
Sbjct: 233 KKDRESKLEEMKANYTNIYVKNIDLAYTEKEFEELFAPFGKITSIYLEKDAEGKSKGFGF 292
Query: 269 IEFIMPKHATHAVSTMN 285
+ F + A AV +N
Sbjct: 293 VNFEEHEAAAKAVEELN 309
Score = 65.5 bits (158), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 51/88 (57%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L V NL+ +D++ L EFK FGT+ +V + +S+GF + F+TP EA KA
Sbjct: 348 YQGVNLFVKNLDEQIDSEKLEEEFKPFGTITSSKVMVDDAGKSKGFGFVCFSTPEEATKA 407
Query: 92 RVEMNGHLIGSKPVIITFVELKPGQRSK 119
EMN ++ KP+ + + K +RS+
Sbjct: 408 ITEMNQRMVNGKPLYVALAQRKDVRRSQ 435
>sp|A4QUF0|PABP_MAGO7 Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 /
FGSC 8958) GN=PAB1 PE=3 SV=1
Length = 762
Score = 135 bits (341), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 87/270 (32%), Positives = 135/270 (50%), Gaps = 27/270 (10%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+PSV L F + G++ +RV R+ S G+A + +NT A+ +KA E+
Sbjct: 63 LYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEEL 122
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI +P I + + P R G VF+KNL +D + L F FG
Sbjct: 123 NYTLIKGRPCRIMWSQRDPALRKTGQG---------NVFIKNLDVAIDNKALHDTFAAFG 173
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKV- 214
NI+ K+ +DENG SKG+GF+ + + +AA +AI +NG ++ +V +P K
Sbjct: 174 NILSCKVAQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYV--GHHIPKKDRQ 231
Query: 215 --FPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKH------I 266
F ++K A I+V N+ + + EF LF ++G +TSSSL D+
Sbjct: 232 SKFDEMK------ANFTNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGF 285
Query: 267 GFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
GF+ F + A+ AV +N F + L V
Sbjct: 286 GFVNFTSHEDASKAVQELNEKEFHGQNLYV 315
Score = 109 bits (272), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 81/325 (24%), Positives = 146/325 (44%), Gaps = 67/325 (20%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ ++DN+AL + F FG + +VA+++N S+G+ + + T A +A +NG
Sbjct: 153 IKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYETDEAASQAIKHVNGM 212
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ K V + K ++SK +E + ++VKN+ V ++E ++ F K+G++
Sbjct: 213 LLNEKKVYVGHHIPKKDRQSK---FDEMKANFTNIYVKNINPEVTDDEFRTLFEKYGDVT 269
Query: 159 EVKIVRD-ENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLA--------EIV 209
+ RD E GKS+GFGF+ F S++ A KA+ E+N + + +V A E+
Sbjct: 270 SSSLARDQETGKSRGFGFVNFTSHEDASKAVQELNEKEFHGQNLYVGRAQKKHEREEEL- 328
Query: 210 PGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDK----- 264
+K + + + +++ NL +++ + +LF+ FG ITS+ ++ D
Sbjct: 329 --RKSYEAARQEKASKYQGVNLYIKNLDDEVDDEKLRQLFSEFGPITSAKVMRDSITEPG 386
Query: 265 -----------------------------------------------HIGFIEFIMPKHA 277
GF+ F P A
Sbjct: 387 EEGESKEGEESEKNKENKPEEKEGDDSKPEEKEGEDSKSKSKLGKSKGFGFVCFANPDDA 446
Query: 278 THAVSTMNGHVFKSKPLKVTLSGTK 302
T AV+ MN + +KPL V L+ K
Sbjct: 447 TKAVAEMNQRMVNNKPLYVALAQRK 471
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/226 (25%), Positives = 99/226 (43%), Gaps = 55/226 (24%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
++V N+ P V + F+K+G + +AR++ +SRGF + F + +A KA E+
Sbjct: 244 IYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQEL 303
Query: 96 NGHLIGSKPVIITFVELKPG-----QRSKPVGPEEK--QYKKDKVFVKNLVETVDEEELK 148
N + + + + K ++S +EK +Y+ +++KNL + VD+E+L+
Sbjct: 304 NEKEFHGQNLYVGRAQKKHEREEELRKSYEAARQEKASKYQGVNLYIKNLDDEVDDEKLR 363
Query: 149 SHFIKFGNIIEVKIVRD----------------------------ENGKSK--------- 171
F +FG I K++RD E SK
Sbjct: 364 QLFSEFGPITSAKVMRDSITEPGEEGESKEGEESEKNKENKPEEKEGDDSKPEEKEGEDS 423
Query: 172 ----------GFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
GFGF+ F + A KA+ EMN RM+ + +V+LA+
Sbjct: 424 KSKSKLGKSKGFGFVCFANPDDATKAVAEMNQRMVNNKPLYVALAQ 469
Score = 36.6 bits (83), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 32/141 (22%), Positives = 51/141 (36%), Gaps = 49/141 (34%)
Query: 20 EGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVAR----------- 68
E AR K + Y+ L++ NL+ VD++ L F +FG + +V R
Sbjct: 333 EAARQEKASK--YQGVNLYIKNLDDEVDDEKLRQLFSEFGPITSAKVMRDSITEPGEEGE 390
Query: 69 ------------NKNDESRG------------------------FAIIVFNTPAEAKKAR 92
NK +E G F + F P +A KA
Sbjct: 391 SKEGEESEKNKENKPEEKEGDDSKPEEKEGEDSKSKSKLGKSKGFGFVCFANPDDATKAV 450
Query: 93 VEMNGHLIGSKPVIITFVELK 113
EMN ++ +KP+ + + K
Sbjct: 451 AEMNQRMVNNKPLYVALAQRK 471
>sp|Q74ZS6|PABP_ASHGO Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=PAB1 PE=3 SV=1
Length = 585
Score = 135 bits (340), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 85/276 (30%), Positives = 145/276 (52%), Gaps = 13/276 (4%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+++ NL P++DN++L F FG + +VA ++N SRGF + F ++A+ A ++
Sbjct: 128 IYIKNLHPAIDNKSLHETFSTFGNILSCKVATDENGVSRGFGFVHFENESDARDAIEAVD 187
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G L+ + V + K ++SK EE + K V+VKN+ + +EE + F K+G
Sbjct: 188 GMLMNDQEVYVALHVSKKDRQSKL---EEVKAKFTNVYVKNIDQETSQEEFEELFGKYGK 244
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IVPG 211
I + +D GK +GFGF+ F + AA KA+ E+N + +V A+ +
Sbjct: 245 ITSAVLEKDSEGKLRGFGFVNFEDHAAAAKAVDELNELEFKGQKLYVGRAQKKYERLQEL 304
Query: 212 KKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHI 266
KK + + L + +FV NL +I++ + +E FA FGTITS+ ++ D +
Sbjct: 305 KKQYEAARLEKLAKYQGVNLFVKNLDDSIDDEKLKEEFAPFGTITSAKVMRDETGNSRGF 364
Query: 267 GFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ F P+ AT A++ N + KPL V ++ K
Sbjct: 365 GFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRK 400
Score = 122 bits (307), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 84/268 (31%), Positives = 129/268 (48%), Gaps = 24/268 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V LEP+V L + F G++ +RV R+ + S G+A + F+ KA ++
Sbjct: 40 LYVGELEPTVSEALLYDIFSPIGSVSSIRVCRDAITNTSLGYAYVNFHDHEAGPKAIEQL 99
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI KP I + + P R K G +++KNL +D + L F FG
Sbjct: 100 NYTLIKGKPCRIMWSQRDPSLRKKGSG---------NIYIKNLHPAIDNKSLHETFSTFG 150
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ DENG S+GFGF+ F + A AI ++G ++ +V+L V
Sbjct: 151 NILSCKVATDENGVSRGFGFVHFENESDARDAIEAVDGMLMNDQEVYVAL-------HVS 203
Query: 216 PKVKPPLLQP--ARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGF 268
K + L+ A+ ++V N+ + EFEELF ++G ITS+ L D + GF
Sbjct: 204 KKDRQSKLEEVKAKFTNVYVKNIDQETSQEEFEELFGKYGKITSAVLEKDSEGKLRGFGF 263
Query: 269 IEFIMPKHATHAVSTMNGHVFKSKPLKV 296
+ F A AV +N FK + L V
Sbjct: 264 VNFEDHAAAAKAVDELNELEFKGQKLYV 291
Score = 68.2 bits (165), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 51/88 (57%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L V NL+ S+D++ L EF FGT+ +V R++ SRGF + F+TP EA KA
Sbjct: 319 YQGVNLFVKNLDDSIDDEKLKEEFAPFGTITSAKVMRDETGNSRGFGFVCFSTPEEATKA 378
Query: 92 RVEMNGHLIGSKPVIITFVELKPGQRSK 119
E N ++ KP+ + + K +R++
Sbjct: 379 ITEKNQQIVAGKPLYVAIAQRKEVRRNQ 406
>sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2
PE=1 SV=1
Length = 629
Score = 134 bits (337), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 84/276 (30%), Positives = 152/276 (55%), Gaps = 15/276 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S+D++AL + F FG + +VA + + +S+G+ + + A+KA ++N
Sbjct: 126 IFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLN 185
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G L+ K V + P R + + K V+VKNL E+ +++LK+ F ++G
Sbjct: 186 GMLLNDKQVYV-----GPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGK 240
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFP 216
I +++D GKSKGFGF+ F + A +A+ +NG +V A+ ++
Sbjct: 241 ITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETEL 300
Query: 217 KVK--PPLLQPARK---NKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHI 266
+V+ L + A K + ++V NL +I++ + +E+F+ FGT+TSS ++ D K
Sbjct: 301 RVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGS 360
Query: 267 GFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ F P+ AT A+S ++G + +SKPL V ++ K
Sbjct: 361 GFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQRK 396
Score = 125 bits (314), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 77/277 (27%), Positives = 134/277 (48%), Gaps = 22/277 (7%)
Query: 22 ARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAII 80
A S + L+V +L+ +V + L + F + GT+ VRV R+ S G+ +
Sbjct: 23 ATSGGATATQFGNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYV 82
Query: 81 VFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVE 140
F P +A +A E+N + KP+ + + P R G +F+KNL E
Sbjct: 83 NFTNPQDAARAIQELNYIPLYGKPIRVMYSHRDPSVRRSGAG---------NIFIKNLDE 133
Query: 141 TVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNS 200
++D + L F FGNI+ K+ D +G+SKG+GF+Q+ + ++A+KAI ++NG ++
Sbjct: 134 SIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQ 193
Query: 201 TFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSL 260
+V G + + + + ++V NL + + + + F +G ITS+ +
Sbjct: 194 VYV-------GPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVV 246
Query: 261 VSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSK 292
+ D K GF+ F A AV ++NGH F K
Sbjct: 247 MKDGEGKSKGFGFVNFENADDAARAVESLNGHKFDDK 283
Score = 91.7 bits (226), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 106/202 (52%), Gaps = 12/202 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
++V NL S + L N F ++G + V ++ +S+GF + F +A +A +N
Sbjct: 217 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLN 276
Query: 97 GHLIGSKPVIITFVELKPGQRS-------KPVGPEEKQYKKDKVFVKNLVETVDEEELKS 149
GH K + + K + + + + +++ ++VKNL ++ +E+LK
Sbjct: 277 GHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKE 336
Query: 150 HFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIV 209
F FG + K++RD NG SKG GF+ F + + A +A+ +++G+MI+ +V++A+
Sbjct: 337 IFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQRK 396
Query: 210 PGKKV-----FPKVKPPLLQPA 226
++V F +V+P +QP+
Sbjct: 397 EDRRVRLQAQFSQVRPVAMQPS 418
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 53/92 (57%)
Query: 26 KENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTP 85
KE ++ + L+V NL+PS+ ++ L F FGT+ +V R+ N S+G + F TP
Sbjct: 309 KEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATP 368
Query: 86 AEAKKARVEMNGHLIGSKPVIITFVELKPGQR 117
EA +A +++G +I SKP+ + + K +R
Sbjct: 369 EEATEAMSQLSGKMIESKPLYVAIAQRKEDRR 400
Score = 40.0 bits (92), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITS----SSLVSDKHIGF--IEFIMPKHATHAVSTM 284
++V +L N+ +S+ + F + GT+ + LV+ + +G+ + F P+ A A+ +
Sbjct: 38 LYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQEL 97
Query: 285 NGHVFKSKPLKVTLSGTKPGV 305
N KP++V S P V
Sbjct: 98 NYIPLYGKPIRVMYSHRDPSV 118
>sp|Q54BM2|PAP1A_DICDI Polyadenylate-binding protein 1-A OS=Dictyostelium discoideum
GN=pabpc1A PE=1 SV=1
Length = 565
Score = 134 bits (336), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 85/272 (31%), Positives = 143/272 (52%), Gaps = 18/272 (6%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ +D++AL + F FG + +V + + S+GF + + T A KA ++NG
Sbjct: 102 IKNLDKGIDHKALYDTFSAFGNILSCKVVTDDGNSSKGFGFVHYETQESADKAIAKVNGM 161
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
+I + V + P + SK G + + K VF KNL E V ++LK ++G I
Sbjct: 162 MINGQKVFV-----GPFKSSKERG-QPTEVKFTNVFFKNLSEDVGPDQLKELLQQYGEIT 215
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKV--FP 216
+ I+ D+ GKSKGFGF F S +AA+ + NG++ + A+ KK+
Sbjct: 216 NITIMADDKGKSKGFGFANFESAEAAKNVVENENGKIFHGKPIYAGRAQ----KKIEREA 271
Query: 217 KVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIE 270
++K + +++ N+ +I+N + E+F++FGTITS+ ++ D K GF+
Sbjct: 272 ELKHTFETKYQGVNLYIKNIDDSIDNDKLREVFSQFGTITSAIVMKDDKATTSKGFGFVC 331
Query: 271 FIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
+ P AT AV+ MNG + +KPL V L+ K
Sbjct: 332 YTAPDEATRAVTEMNGRMIGTKPLYVALAQRK 363
Score = 120 bits (302), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 80/264 (30%), Positives = 131/264 (49%), Gaps = 23/264 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDE-SRGFAIIVFNTPAEAKKARVEM 95
L+V +L P V Q L F + G + ++RV R+ N S +A + + A+A++A +
Sbjct: 12 LYVGDLLPEVSEQHLFEIFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNGADAERALDTL 71
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N I K I + + P R VG VF+KNL + +D + L F FG
Sbjct: 72 NNTPIRGKACRIMWSQRDPSLRKSGVG---------NVFIKNLDKGIDHKALYDTFSAFG 122
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+V D+ SKGFGF+ + + ++A+KAI ++NG MI FV P K
Sbjct: 123 NILSCKVVTDDGNSSKGFGFVHYETQESADKAIAKVNGMMINGQKVFVG-----PFKSSK 177
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIE 270
+ +P + + +F NL ++ + +EL ++G IT+ ++++D K GF
Sbjct: 178 ERGQPTEV---KFTNVFFKNLSEDVGPDQLKELLQQYGEITNITIMADDKGKSKGFGFAN 234
Query: 271 FIMPKHATHAVSTMNGHVFKSKPL 294
F + A + V NG +F KP+
Sbjct: 235 FESAEAAKNVVENENGKIFHGKPI 258
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKK 90
Y+ L++ N++ S+DN L F +FGT+ V ++ K S+GF + + P EA +
Sbjct: 281 YQGVNLYIKNIDDSIDNDKLREVFSQFGTITSAIVMKDDKATTSKGFGFVCYTAPDEATR 340
Query: 91 ARVEMNGHLIGSKPVIITFVELKPGQRSK 119
A EMNG +IG+KP+ + + K +R++
Sbjct: 341 AVTEMNGRMIGTKPLYVALAQRKDIRRAQ 369
>sp|Q1DXH0|PABP_COCIM Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Coccidioides immitis (strain RS) GN=PAB1 PE=3 SV=1
Length = 768
Score = 131 bits (330), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 82/269 (30%), Positives = 130/269 (48%), Gaps = 25/269 (9%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+PSV L F G + +RV R+ S G+A + +N A+ ++A ++
Sbjct: 57 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 116
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI +P I + + P R G VF+KNL +D + L F FG
Sbjct: 117 NYTLIKGRPCRIMWSQRDPALRKTGQG---------NVFIKNLDTAIDNKALHDTFAAFG 167
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ +DE G SKG+GF+ + + +AA+ AI +NG ++ FV G +
Sbjct: 168 NILSCKVAQDEFGNSKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFV-------GHHIA 220
Query: 216 PKVKPPLLQPARKN--KIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIG 267
K + + + N ++V N+ + EF +LF +FG ITS++L D + G
Sbjct: 221 KKDRQSKFEEMKANFTNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFG 280
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
F+ F +A AV +N FK + L V
Sbjct: 281 FVNFTSHDNAAAAVEALNDKDFKGQKLYV 309
Score = 108 bits (269), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 69/231 (29%), Positives = 126/231 (54%), Gaps = 9/231 (3%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ ++DN+AL + F FG + +VA+++ S+G+ + + T A+ A +NG
Sbjct: 147 IKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAAQNAIKHVNGM 206
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ K V + K ++SK EE + V+VKN+ + EEE + F KFG I
Sbjct: 207 LLNDKKVFVGHHIAKKDRQSK---FEEMKANFTNVYVKNIDQDTTEEEFRDLFEKFGEIT 263
Query: 159 EVKIVRD-ENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGK--KVF 215
+ RD E+GKS+GFGF+ F S+ A A+ +N + + +V A+ + ++
Sbjct: 264 SATLARDAESGKSRGFGFVNFTSHDNAAAAVEALNDKDFKGQKLYVGRAQKKHEREEELR 323
Query: 216 PKVKPPLLQPARKNK---IFVANLPSNINNSEFEELFARFGTITSSSLVSD 263
+ + ++ A K + +++ NL +I++ + ELF+ +GTITS+ ++ D
Sbjct: 324 KQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLRELFSSYGTITSAKVMRD 374
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/236 (23%), Positives = 98/236 (41%), Gaps = 69/236 (29%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKKARVEM 95
++V N++ + + F+KFG + +AR+ ++ +SRGF + F + A A +
Sbjct: 238 VYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAVEAL 297
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKV-----------FVKNLVETVDE 144
N + + + + K +R + + KQY+ ++ ++KNL + +D+
Sbjct: 298 NDKDFKGQKLYVGRAQKKH-EREEEL---RKQYEAARIEKASKYQGVNLYIKNLSDDIDD 353
Query: 145 EELKSHFIKFGNIIEVKIVRD--------------------------------------- 165
E+L+ F +G I K++RD
Sbjct: 354 EKLRELFSSYGTITSAKVMRDFAPESTSDSEKEAKKDSKEPETKEEEPKDEAGDNAENKD 413
Query: 166 --EN------------GKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
EN GKSKGFGF+ F S A KA+ EMN RM+ +V+LA+
Sbjct: 414 NKENKAESKKSEKKPLGKSKGFGFVCFSSPDEASKAVTEMNQRMVHGKPLYVALAQ 469
Score = 41.2 bits (95), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 28/46 (60%)
Query: 74 SRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSK 119
S+GF + F++P EA KA EMN ++ KP+ + + K +RS+
Sbjct: 432 SKGFGFVCFSSPDEASKAVTEMNQRMVHGKPLYVALAQRKDVRRSQ 477
Score = 33.5 bits (75), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 22/43 (51%)
Query: 260 LVSDKHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
L K GF+ F P A+ AV+ MN + KPL V L+ K
Sbjct: 429 LGKSKGFGFVCFSSPDEASKAVTEMNQRMVHGKPLYVALAQRK 471
>sp|A2Q848|PABP_ASPNC Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513)
GN=pab1 PE=3 SV=1
Length = 731
Score = 131 bits (330), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 84/268 (31%), Positives = 132/268 (49%), Gaps = 24/268 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+PSV L F G + +RV R+ S G+A + +N A+ ++A ++
Sbjct: 56 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 115
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI KP I + + P R G VF+KNL +D + L F FG
Sbjct: 116 NYTLIKGKPCRIMWSQRDPALRKTGQG---------NVFIKNLDSAIDNKALHDTFAAFG 166
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ +DE G SKG+GF+ + + +AA AI +NG ++ FV G +
Sbjct: 167 NILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFV-------GHHIS 219
Query: 216 PKVKPPLLQPARKN--KIFVANLPSNINNSEFEELFARFGTITSSSLVSDKH-----IGF 268
K + + + N +++ NL S I++ EF ++F +FG ITS++L D+ GF
Sbjct: 220 KKDRQSKFEEMKANFTNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQEGKSRGFGF 279
Query: 269 IEFIMPKHATHAVSTMNGHVFKSKPLKV 296
+ F + A AV MN +S+ L V
Sbjct: 280 VNFSTHESAQAAVEEMNDKEIRSQKLYV 307
Score = 120 bits (300), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 78/268 (29%), Positives = 141/268 (52%), Gaps = 18/268 (6%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK W + D R + N + + NL+ ++DN+AL + F FG +
Sbjct: 121 KGKPCRIMWSQ---RDPALRKTGQGN-------VFIKNLDSAIDNKALHDTFAAFGNILS 170
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+VA+++ S+G+ + + T A A +NG L+ K V + K ++SK
Sbjct: 171 CKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKF--- 227
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
EE + V++KNL +D++E + F KFG I + RD+ GKS+GFGF+ F ++++
Sbjct: 228 EEMKANFTNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHES 287
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAEIVPGK--KVFPKVKPPLLQPARKNK---IFVANLPS 238
A+ A+ EMN + I+ +V A+ + ++ + + L+ A K + ++V NL
Sbjct: 288 AQAAVEEMNDKEIRSQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTD 347
Query: 239 NINNSEFEELFARFGTITSSSLVSDKHI 266
+I++ + ELF +GTITS+ ++ D ++
Sbjct: 348 DIDDEKLRELFGPYGTITSAKVMRDTNV 375
Score = 76.6 bits (187), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 60/239 (25%), Positives = 103/239 (43%), Gaps = 72/239 (30%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+++ NL+ +D+ F+KFG + ++R++ +SRGF + F+T A+ A EMN
Sbjct: 237 VYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVEEMN 296
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKV-----------FVKNLVETVDEE 145
I S+ + + + K +R + + KQY+ ++ +VKNL + +D+E
Sbjct: 297 DKEIRSQKLYVGRAQKK-HEREEEL---RKQYEAARLEKASKYQGVNLYVKNLTDDIDDE 352
Query: 146 ELKSHFIKFGNIIEVKIV------RDEN-------------------------------- 167
+L+ F +G I K++ RD++
Sbjct: 353 KLRELFGPYGTITSAKVMRDTNVERDQSPDSAGKEKEADKENDKEATPEAEKAEKAEEKP 412
Query: 168 -------------------GKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
GKSKGFGF+ F S A KA+ EMN RM+ +V+LA+
Sbjct: 413 SESSEEKDKEAKKSDKKPFGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQ 471
Score = 41.2 bits (95), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 28/46 (60%)
Query: 74 SRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSK 119
S+GF + F++P EA KA EMN ++ KP+ + + K +RS+
Sbjct: 434 SKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQ 479
>sp|Q0U1G2|PABP_PHANO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 /
FGSC 10173) GN=PAB1 PE=3 SV=3
Length = 744
Score = 130 bits (327), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 84/266 (31%), Positives = 131/266 (49%), Gaps = 20/266 (7%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+PSV L F G + +RV R+ S G+A + +N+ + +KA E+
Sbjct: 50 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKALEEL 109
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N +I KP I + + P R G VF+KNL +D + L F FG
Sbjct: 110 NYTVIKGKPCRIMWSQRDPALRKTGQG---------NVFIKNLDHAIDNKALHDTFAAFG 160
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ +DE G SKG+GF+ + + +AA AI +NG ++ FV +P K+
Sbjct: 161 NILSCKVAQDELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFV--GHHIPKKERM 218
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIE 270
K + A I+V N+ ++ + +F ELF + G ITS+S+ D + GF+
Sbjct: 219 SKFEE---MKANFTNIYVKNIDLDVTDEDFRELFEKHGDITSASIARDDQGKSRGFGFVN 275
Query: 271 FIMPKHATHAVSTMNGHVFKSKPLKV 296
+I + A AV +N FK + L V
Sbjct: 276 YIRHEAAAVAVDHLNDIEFKGQKLYV 301
Score = 97.8 bits (242), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/263 (26%), Positives = 130/263 (49%), Gaps = 18/263 (6%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK W + D R + N + + NL+ ++DN+AL + F FG +
Sbjct: 115 KGKPCRIMWSQ---RDPALRKTGQGN-------VFIKNLDHAIDNKALHDTFAAFGNILS 164
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+VA+++ S+G+ + + T A A +NG L+ K V + K + SK
Sbjct: 165 CKVAQDELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKERMSKF--- 221
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
EE + ++VKN+ V +E+ + F K G+I I RD+ GKS+GFGF+ + ++A
Sbjct: 222 EEMKANFTNIYVKNIDLDVTDEDFRELFEKHGDITSASIARDDQGKSRGFGFVNYIRHEA 281
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAEIVPGK--KVFPKVKPPLLQPARKNK---IFVANLPS 238
A A+ +N + +V A+ + ++ + + L+ K + +++ NL
Sbjct: 282 AAVAVDHLNDIEFKGQKLYVGRAQKKHEREEELRKQYEAARLEKQSKYQGVNLYIKNLND 341
Query: 239 NINNSEFEELFARFGTITSSSLV 261
++++ + ++F FGTITS+ ++
Sbjct: 342 DVDDEKLRDMFTPFGTITSAKVI 364
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/232 (23%), Positives = 96/232 (41%), Gaps = 62/232 (26%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
++V N++ V ++ F+K G + +AR+ +SRGF + + A A +N
Sbjct: 231 IYVKNIDLDVTDEDFRELFEKHGDITSASIARDDQGKSRGFGFVNYIRHEAAAVAVDHLN 290
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPE------EKQ--YKKDKVFVKNLVETVDEEELK 148
+ + + + K +R + + + EKQ Y+ +++KNL + VD+E+L+
Sbjct: 291 DIEFKGQKLYVGRAQ-KKHEREEELRKQYEAARLEKQSKYQGVNLYIKNLNDDVDDEKLR 349
Query: 149 SHFIKFGNIIEVKIV----------------------------------RDENG------ 168
F FG I K++ ++NG
Sbjct: 350 DMFTPFGTITSAKVILRDEEKKDEEEKEVKEEKKEDEKKEDEEAKEGSSSEQNGEDTKAG 409
Query: 169 -------------KSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
KSKGFGF+ F + A KA+ EMN +MI+ +V+LA+
Sbjct: 410 DKVTIKGEKKILGKSKGFGFVCFSNPDEATKAVTEMNQKMIEGKPLYVALAQ 461
Score = 38.5 bits (88), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 74 SRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELK 113
S+GF + F+ P EA KA EMN +I KP+ + + K
Sbjct: 424 SKGFGFVCFSNPDEATKAVTEMNQKMIEGKPLYVALAQRK 463
Score = 34.3 bits (77), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 23/43 (53%)
Query: 260 LVSDKHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
L K GF+ F P AT AV+ MN + + KPL V L+ K
Sbjct: 421 LGKSKGFGFVCFSNPDEATKAVTEMNQKMIEGKPLYVALAQRK 463
>sp|Q5AI15|PABP_CANAL Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) GN=PAB1 PE=3
SV=1
Length = 629
Score = 129 bits (325), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 93/309 (30%), Positives = 155/309 (50%), Gaps = 23/309 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
+G+ W + D AR + + N + + NL P++DN+AL + F FG +
Sbjct: 119 EGRPCRIMWSQ---RDPSARRSGDGN-------IFIKNLHPAIDNKALHDTFSAFGKILS 168
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+VA ++ +S+ F + + T A+ A +NG L+ + V FV ++ +
Sbjct: 169 CKVATDEFGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREV---FVGKHISKKDRESKF 225
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
EE + ++VKN+ EE + F FG I + + +D++GKSKGFGF+ F +++
Sbjct: 226 EEMKANFTNIYVKNIDLNYSEESFEKLFSPFGKITSIYLEKDQDGKSKGFGFVNFEDHES 285
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A KA+ E+N + I +V A+ + KK + V+ L + +FV NL
Sbjct: 286 AVKAVEELNDKEINGQKIYVGRAQKKRERLEELKKQYEAVRLEKLAKYQGVNLFVKNLDD 345
Query: 239 NINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKP 293
I++ + EE F FGTITS+ ++ D K GF+ F P+ AT A++ MN + KP
Sbjct: 346 TIDSEKLEEEFKPFGTITSAKVMVDEAGKSKGFGFVCFTTPEEATKAITEMNTRMINGKP 405
Query: 294 LKVTLSGTK 302
L V L+ K
Sbjct: 406 LYVALAQRK 414
Score = 103 bits (258), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 84/276 (30%), Positives = 133/276 (48%), Gaps = 25/276 (9%)
Query: 19 DEGARSNKENNKVYKEN-ELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRG 76
D+ A E++ V + + L+V L PSV+ L F G + +RV R+ + +S G
Sbjct: 35 DQSAEEQGESSGVAENSASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLG 94
Query: 77 FAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVK 136
+A + ++ + +KA E+N + I +P I + + P R G +F+K
Sbjct: 95 YAYVNYHKYEDGEKAIEELNYNPIEGRPCRIMWSQRDPSARRSGDG---------NIFIK 145
Query: 137 NLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMI 196
NL +D + L F FG I+ K+ DE G+SK FGF+ + + +AAE AI +NG ++
Sbjct: 146 NLHPAIDNKALHDTFSAFGKILSCKVATDEFGQSKCFGFVHYETAEAAEAAIENVNGMLL 205
Query: 197 QHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKN--KIFVANLPSNINNSEFEELFARFGT 254
FV GK + K + + + N I+V N+ N + FE+LF+ FG
Sbjct: 206 NDREVFV-------GKHISKKDRESKFEEMKANFTNIYVKNIDLNYSEESFEKLFSPFGK 258
Query: 255 ITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMN 285
ITS L D K GF+ F + A AV +N
Sbjct: 259 ITSIYLEKDQDGKSKGFGFVNFEDHESAVKAVEELN 294
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 52/88 (59%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L V NL+ ++D++ L EFK FGT+ +V ++ +S+GF + F TP EA KA
Sbjct: 333 YQGVNLFVKNLDDTIDSEKLEEEFKPFGTITSAKVMVDEAGKSKGFGFVCFTTPEEATKA 392
Query: 92 RVEMNGHLIGSKPVIITFVELKPGQRSK 119
EMN +I KP+ + + K +RS+
Sbjct: 393 ITEMNTRMINGKPLYVALAQRKDVRRSQ 420
>sp|A5DM21|PABP_PICGU Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566
/ DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) GN=PAB1
PE=3 SV=2
Length = 631
Score = 129 bits (325), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 93/308 (30%), Positives = 154/308 (50%), Gaps = 23/308 (7%)
Query: 5 GKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDV 64
G+ W + D R N + N + + NL P++DN+AL + F FG +
Sbjct: 126 GRPCRIMWSQ---RDPSLRRNGDGN-------IFIKNLHPAIDNKALHDTFSAFGRILSC 175
Query: 65 RVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPE 124
+VA ++ +S+ F + + T A+ A +NG L+ + V FV +R + E
Sbjct: 176 KVATDELGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREV---FVGKHVSKRDRESKFE 232
Query: 125 EKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAA 184
E + V+VKNL VD + + F FG + V + D+ GKS+GFGF+ F ++++A
Sbjct: 233 EMKANFTNVYVKNLAPEVDNAKFEEIFKPFGPVTSVHLETDQEGKSRGFGFVNFENHESA 292
Query: 185 EKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPSN 239
A+ EMN + I +V A+ + K+++ + L + +FV NL +
Sbjct: 293 LNAVKEMNDKEIDGQKLYVGRAQKKRERLDELKRLYESTRLEKLSKYQGVNLFVKNLDDS 352
Query: 240 INNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
I++ + EE F FGTITS+ ++ D K GF+ F P+ AT A++ MN + + KPL
Sbjct: 353 IDSEKLEEEFKPFGTITSARVMVDDAGKSKGFGFVCFSSPEEATKAITEMNQRMIQGKPL 412
Query: 295 KVTLSGTK 302
V L+ K
Sbjct: 413 YVALAQRK 420
Score = 112 bits (279), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 88/298 (29%), Positives = 140/298 (46%), Gaps = 38/298 (12%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L PSV+ L F G + +RV R+ +S G+A + F+ A+ +A E+
Sbjct: 60 LYVGELNPSVNEALLFEIFSPIGQVSSIRVCRDAVTKKSLGYAYVNFHKHADGSRAIEEL 119
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N L+ +P I + + P R G +F+KNL +D + L F FG
Sbjct: 120 NYSLVDGRPCRIMWSQRDPSLRRNGDG---------NIFIKNLHPAIDNKALHDTFSAFG 170
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
I+ K+ DE G+SK FGF+ + + +AAE AI +NG ++ FV GK V
Sbjct: 171 RILSCKVATDELGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFV-------GKHVS 223
Query: 216 PKVKPPLLQPARKN--KIFVANLPSNINNSEFEELFARFGTITSSSLVSDKH-----IGF 268
+ + + + N ++V NL ++N++FEE+F FG +TS L +D+ GF
Sbjct: 224 KRDRESKFEEMKANFTNVYVKNLAPEVDNAKFEEIFKPFGPVTSVHLETDQEGKSRGFGF 283
Query: 269 IEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKPGVSITNPTKAPKKPAYIDEVKNV 326
+ F + A +AV MN + L V +A KK +DE+K +
Sbjct: 284 VNFENHESALNAVKEMNDKEIDGQKLYV--------------GRAQKKRERLDELKRL 327
Score = 68.2 bits (165), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 52/88 (59%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L V NL+ S+D++ L EFK FGT+ RV + +S+GF + F++P EA KA
Sbjct: 339 YQGVNLFVKNLDDSIDSEKLEEEFKPFGTITSARVMVDDAGKSKGFGFVCFSSPEEATKA 398
Query: 92 RVEMNGHLIGSKPVIITFVELKPGQRSK 119
EMN +I KP+ + + K +RS+
Sbjct: 399 ITEMNQRMIQGKPLYVALAQRKDVRRSQ 426
>sp|A3LXL0|PABP_PICST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS
6054 / NBRC 10063 / NRRL Y-11545) GN=PAB1 PE=3 SV=1
Length = 632
Score = 129 bits (324), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 93/309 (30%), Positives = 154/309 (49%), Gaps = 23/309 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
+G+ W + D AR + + N + + NL P++DN+AL + F FG +
Sbjct: 119 EGRPCRIMWSQ---RDPSARRSGDGN-------IFIKNLHPAIDNKALHDTFSTFGKILS 168
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+VA + +S+ F + + T A+ A +NG L+ + V FV ++ +
Sbjct: 169 CKVATDDMGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREV---FVGKHISKKDRESKF 225
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
EE + ++VKN+ EE+LK F +G I + + +D GKSKGFGF+ + ++A
Sbjct: 226 EEIKANFTNIYVKNIDLEYSEEDLKKLFTPYGAITSIYLEKDAEGKSKGFGFVNYEGHEA 285
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A KA+ E+N + I +V A+ + KK + + L + +F+ NL
Sbjct: 286 AVKAVEELNDKEINGQKIYVGRAQKKRERMEELKKQYENTRLEKLSKYQGVNLFIKNLDD 345
Query: 239 NINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKP 293
I++ + EE F FGTITS+ ++ D K GF+ F P+ AT A++ MN +F KP
Sbjct: 346 TIDSEKLEEEFKPFGTITSARVMVDETGKSKGFGFVCFSSPEEATKAITEMNQRMFFGKP 405
Query: 294 LKVTLSGTK 302
L V L+ K
Sbjct: 406 LYVALAQRK 414
Score = 91.3 bits (225), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 73/257 (28%), Positives = 120/257 (46%), Gaps = 24/257 (9%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L SV+ L F G + +RV R+ + +S G+A + ++ + +KA E+
Sbjct: 54 LYVGELNTSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKMEDGEKAIEEL 113
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N I +P I + + P R G +F+KNL +D + L F FG
Sbjct: 114 NYSPIEGRPCRIMWSQRDPSARRSGDG---------NIFIKNLHPAIDNKALHDTFSTFG 164
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
I+ K+ D+ G+SK FGF+ + + +AAE AI +NG ++ FV GK +
Sbjct: 165 KILSCKVATDDMGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFV-------GKHIS 217
Query: 216 PKVKPPLLQPARKN--KIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGF 268
K + + + N I+V N+ + + ++LF +G ITS L D K GF
Sbjct: 218 KKDRESKFEEIKANFTNIYVKNIDLEYSEEDLKKLFTPYGAITSIYLEKDAEGKSKGFGF 277
Query: 269 IEFIMPKHATHAVSTMN 285
+ + + A AV +N
Sbjct: 278 VNYEGHEAAVKAVEELN 294
Score = 65.5 bits (158), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 52/88 (59%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L + NL+ ++D++ L EFK FGT+ RV ++ +S+GF + F++P EA KA
Sbjct: 333 YQGVNLFIKNLDDTIDSEKLEEEFKPFGTITSARVMVDETGKSKGFGFVCFSSPEEATKA 392
Query: 92 RVEMNGHLIGSKPVIITFVELKPGQRSK 119
EMN + KP+ + + K +RS+
Sbjct: 393 ITEMNQRMFFGKPLYVALAQRKDVRRSQ 420
>sp|Q2UK72|PABP_ASPOR Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40)
GN=pab1 PE=3 SV=1
Length = 765
Score = 129 bits (324), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 82/268 (30%), Positives = 130/268 (48%), Gaps = 24/268 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+PSV L F G + +RV R+ S G+A + +N A+ ++A ++
Sbjct: 51 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 110
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI KP I + + P R G VF+KNL +D + L F FG
Sbjct: 111 NYTLIKGKPCRIMWSQRDPALRKTGQG---------NVFIKNLDSAIDNKALHDTFAAFG 161
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ +DE G SKG+GF+ + + +AA AI +NG ++ FV G +
Sbjct: 162 NILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFV-------GHHIS 214
Query: 216 PKVKPPLLQPARKN--KIFVANLPSNINNSEFEELFARFGTITSSSLVSDKH-----IGF 268
K + + + N +++ N+ ++ EF ELF +FG ITS++L D+ GF
Sbjct: 215 KKDRQSKFEEMKANFTNVYIKNIDQDVTEEEFRELFEKFGEITSATLSRDQEGKSRGFGF 274
Query: 269 IEFIMPKHATHAVSTMNGHVFKSKPLKV 296
+ F + A AV MN +++ L V
Sbjct: 275 VNFSTHESAQAAVDEMNEKEIRTQKLYV 302
Score = 119 bits (297), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 79/268 (29%), Positives = 141/268 (52%), Gaps = 18/268 (6%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK W + D R + N + + NL+ ++DN+AL + F FG +
Sbjct: 116 KGKPCRIMWSQ---RDPALRKTGQGN-------VFIKNLDSAIDNKALHDTFAAFGNILS 165
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+VA+++ S+G+ + + T A A +NG L+ K V + K ++SK
Sbjct: 166 CKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKF--- 222
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
EE + V++KN+ + V EEE + F KFG I + RD+ GKS+GFGF+ F ++++
Sbjct: 223 EEMKANFTNVYIKNIDQDVTEEEFRELFEKFGEITSATLSRDQEGKSRGFGFVNFSTHES 282
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAEIVPGK--KVFPKVKPPLLQPARKNK---IFVANLPS 238
A+ A+ EMN + I+ +V A+ + ++ + + L+ A K + ++V NL
Sbjct: 283 AQAAVDEMNEKEIRTQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTD 342
Query: 239 NINNSEFEELFARFGTITSSSLVSDKHI 266
++++ + ELF +GTITS+ ++ D +I
Sbjct: 343 DVDDEKLRELFGPYGTITSAKVMRDTNI 370
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 27/40 (67%)
Query: 168 GKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
GKSKGFGF+ F S A KA+ EMN RM+ +V+LA+
Sbjct: 430 GKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQ 469
Score = 41.6 bits (96), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 28/46 (60%)
Query: 74 SRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSK 119
S+GF + F++P EA KA EMN ++ KP+ + + K +RS+
Sbjct: 432 SKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQ 477
Score = 33.5 bits (75), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 22/44 (50%)
Query: 259 SLVSDKHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
L K GF+ F P A+ AV+ MN + KPL V L+ K
Sbjct: 428 GLGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRK 471
>sp|Q5B630|PABP_EMENI Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 /
CBS 112.46 / NRRL 194 / M139) GN=pab1 PE=2 SV=2
Length = 732
Score = 127 bits (320), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 84/268 (31%), Positives = 129/268 (48%), Gaps = 24/268 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+PSV L F G + +RV R+ S G+A + +N A ++A E+
Sbjct: 44 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGERALDEL 103
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI KP I + + P R G VF+KNL +D + L F FG
Sbjct: 104 NYTLIKGKPCRIMWSQRDPALRKTGQG---------NVFIKNLDSAIDNKALHDTFAAFG 154
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ +DE G SKG+GF+ + + +AA AI +NG ++ FV G +
Sbjct: 155 NILSCKVAQDEFGVSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFV-------GHHIS 207
Query: 216 PKVKPPLLQPARKN--KIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGF 268
K + + + N I++ N+ + + EF +LF +FG ITS++L D + GF
Sbjct: 208 KKDRQSKFEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKSRGFGF 267
Query: 269 IEFIMPKHATHAVSTMNGHVFKSKPLKV 296
+ F + A AV MN +S+ L V
Sbjct: 268 VNFSTHESAQAAVEEMNDKEVRSQKLYV 295
Score = 112 bits (281), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 74/265 (27%), Positives = 138/265 (52%), Gaps = 18/265 (6%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK W + D R + N + + NL+ ++DN+AL + F FG +
Sbjct: 109 KGKPCRIMWSQ---RDPALRKTGQGN-------VFIKNLDSAIDNKALHDTFAAFGNILS 158
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+VA+++ S+G+ + + T A A +NG L+ K V + K ++SK
Sbjct: 159 CKVAQDEFGVSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKF--- 215
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
EE + +++KN+ V++EE + F KFG I + RD GKS+GFGF+ F ++++
Sbjct: 216 EEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKSRGFGFVNFSTHES 275
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAEIVPGK--KVFPKVKPPLLQPARKNK---IFVANLPS 238
A+ A+ EMN + ++ +V A+ + ++ + + ++ A K + ++V NL
Sbjct: 276 AQAAVEEMNDKEVRSQKLYVGRAQKKHEREEELRKQYEAARMEKASKYQGVNLYVKNLTD 335
Query: 239 NINNSEFEELFARFGTITSSSLVSD 263
++++ + ELF +GTITS+ ++ D
Sbjct: 336 DVDDDKLRELFGPYGTITSAKVMRD 360
Score = 81.6 bits (200), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 61/233 (26%), Positives = 104/233 (44%), Gaps = 66/233 (28%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+++ N++P V+++ F+KFG + ++R+ +SRGF + F+T A+ A EMN
Sbjct: 225 IYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKSRGFGFVNFSTHESAQAAVEEMN 284
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDK-----------VFVKNLVETVDEE 145
+ S+ + + + K +R + + KQY+ + ++VKNL + VD++
Sbjct: 285 DKEVRSQKLYVGRAQKK-HEREEEL---RKQYEAARMEKASKYQGVNLYVKNLTDDVDDD 340
Query: 146 ELKSHFIKFGNIIEVKIVRD-------------------EN------------------- 167
+L+ F +G I K++RD EN
Sbjct: 341 KLRELFGPYGTITSAKVMRDTAPVETATPESETKESANKENEKAAEGEKEPAAEEKEKEE 400
Query: 168 -------------GKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
GKSKGFGF+ F S A KA+ EMN RM+ +V+LA+
Sbjct: 401 KKEAEQKPEKKPLGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQ 453
Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 56/151 (37%), Gaps = 53/151 (35%)
Query: 20 EGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVAR----------- 68
E AR K + Y+ L+V NL VD+ L F +GT+ +V R
Sbjct: 313 EAARMEKASK--YQGVNLYVKNLTDDVDDDKLRELFGPYGTITSAKVMRDTAPVETATPE 370
Query: 69 -------NKNDE---------------------------------SRGFAIIVFNTPAEA 88
NK +E S+GF + F++P EA
Sbjct: 371 SETKESANKENEKAAEGEKEPAAEEKEKEEKKEAEQKPEKKPLGKSKGFGFVCFSSPDEA 430
Query: 89 KKARVEMNGHLIGSKPVIITFVELKPGQRSK 119
KA EMN ++ KP+ + + K +RS+
Sbjct: 431 SKAVTEMNQRMVNGKPLYVALAQRKDVRRSQ 461
Score = 33.1 bits (74), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 22/43 (51%)
Query: 260 LVSDKHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
L K GF+ F P A+ AV+ MN + KPL V L+ K
Sbjct: 413 LGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRK 455
>sp|P31209|PABP_SCHPO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=pab1 PE=1 SV=2
Length = 653
Score = 127 bits (319), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 78/277 (28%), Positives = 145/277 (52%), Gaps = 19/277 (6%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+P++DN+AL + F FG + +VA ++ ++G+ + F++ A A +NG
Sbjct: 172 IKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVNGM 231
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ K V +V +R + E + V++KNL + E+E F +FG I
Sbjct: 232 LLNDKKV---YVGHHVSRRERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEIT 288
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLA--------EIVP 210
+ +V+D+N K +GFGF+ + +++ A+KA+ E+N + + +V A E+
Sbjct: 289 SLSLVKDQNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHEREEEL-- 346
Query: 211 GKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KH 265
+K + ++K + + +F+ NL +++ + F+ FGTITS+ +++D K
Sbjct: 347 -RKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGKSKG 405
Query: 266 IGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ + P+ A AV+ MN + KPL V L+ K
Sbjct: 406 FGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQRK 442
Score = 124 bits (311), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 83/268 (30%), Positives = 129/268 (48%), Gaps = 24/268 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+PSV L F G + +RV R+ S G+A + F+ + +KA E+
Sbjct: 82 LYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDEL 141
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI +P I + + P R G VF+KNL +D + L F FG
Sbjct: 142 NYTLIKGRPCRIMWSQRDPSLRKMGTG---------NVFIKNLDPAIDNKALHDTFSAFG 192
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
I+ K+ DE G +KG+GF+ F S ++A AI +NG ++ +V G V
Sbjct: 193 KILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYV-------GHHVS 245
Query: 216 PKVKPPLLQPARKN--KIFVANLPSNINNSEFEELFARFGTITSSSLVSDKH-----IGF 268
+ + ++ + N +++ NL + I EF +LF +FG ITS SLV D++ GF
Sbjct: 246 RRERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGF 305
Query: 269 IEFIMPKHATHAVSTMNGHVFKSKPLKV 296
+ + + A AV +N +K K L V
Sbjct: 306 VNYANHECAQKAVDELNDKEYKGKKLYV 333
Score = 101 bits (251), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 99/179 (55%), Gaps = 9/179 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+++ NL+ + Q + F +FG + + + +++ND+ RGF + + A+KA E+N
Sbjct: 263 VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELN 322
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDK--------VFVKNLVETVDEEELK 148
K + + + K +R + + +Q K +K +F+KNL + VD+E LK
Sbjct: 323 DKEYKGKKLYVGRAQ-KKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLK 381
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
+ F FG I KI+ DE GKSKGFGF+ + + + A KA+ EMN RM+ +V+LA+
Sbjct: 382 AEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQ 440
Score = 65.1 bits (157), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 50/88 (56%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L + NL+ VD++ L EF FGT+ ++ ++ +S+GF + + TP EA KA
Sbjct: 361 YQGVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKA 420
Query: 92 RVEMNGHLIGSKPVIITFVELKPGQRSK 119
EMN ++ KP+ + + K +RS+
Sbjct: 421 VTEMNQRMLAGKPLYVALAQRKEVRRSQ 448
>sp|Q0CR95|PABP_ASPTN Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156)
GN=pab1 PE=3 SV=1
Length = 753
Score = 127 bits (319), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 82/268 (30%), Positives = 128/268 (47%), Gaps = 24/268 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+PSV L F G + +RV R+ S G+A + +N A+ ++A ++
Sbjct: 50 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 109
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI KP I + + P R G VF+KNL +D + L F FG
Sbjct: 110 NYTLIKGKPCRIMWSQRDPALRKTGQG---------NVFIKNLDAAIDNKALHDTFAAFG 160
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ +DE G SKG+GF+ + + +AA AI +NG ++ FV G +
Sbjct: 161 NILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFV-------GHHIS 213
Query: 216 PKVKPPLLQPARKN--KIFVANLPSNINNSEFEELFARFGTITSSSLVSDKH-----IGF 268
K + + + N +++ NL I+ EF ++F +FG ITS++L D+ GF
Sbjct: 214 KKDRQSKFEEMKANFTNVYIKNLDQEISEEEFRQMFEKFGEITSATLSRDQEGKSRGFGF 273
Query: 269 IEFIMPKHATHAVSTMNGHVFKSKPLKV 296
+ + A AV MN K + L V
Sbjct: 274 VNYSTHDSAQAAVDEMNDKEVKGQKLYV 301
Score = 120 bits (301), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 93/357 (26%), Positives = 161/357 (45%), Gaps = 74/357 (20%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK W + D R + N + + NL+ ++DN+AL + F FG +
Sbjct: 115 KGKPCRIMWSQ---RDPALRKTGQGN-------VFIKNLDAAIDNKALHDTFAAFGNILS 164
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+VA+++ S+G+ + + T A A +NG L+ K V + K ++SK
Sbjct: 165 CKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKF--- 221
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
EE + V++KNL + + EEE + F KFG I + RD+ GKS+GFGF+ + ++ +
Sbjct: 222 EEMKANFTNVYIKNLDQEISEEEFRQMFEKFGEITSATLSRDQEGKSRGFGFVNYSTHDS 281
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAEIVPGKK--VFPKVKPPLLQPARKNK---IFVANLPS 238
A+ A+ EMN + ++ +V A+ ++ + + + L+ A K + ++V NL
Sbjct: 282 AQAAVDEMNDKEVKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTD 341
Query: 239 NINNSEFEELFARFGTITSSSLV------------------------------------- 261
+I++ + E+FA +GTITS+ ++
Sbjct: 342 DIDDEKLREMFAPYGTITSAKVMRDTNIERTQTPDSDKEKKEESKEEKPEAAEKTEEAAK 401
Query: 262 ------------SDKHI-------GFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299
SDK + GF+ F P A+ AV+ MN + KPL V L+
Sbjct: 402 ESGDDQDKENKKSDKKVLGKSKGFGFVCFSSPDEASKAVTEMNQRMINGKPLYVALA 458
Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/233 (24%), Positives = 100/233 (42%), Gaps = 66/233 (28%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+++ NL+ + + F+KFG + ++R++ +SRGF + ++T A+ A EMN
Sbjct: 231 VYIKNLDQEISEEEFRQMFEKFGEITSATLSRDQEGKSRGFGFVNYSTHDSAQAAVDEMN 290
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKV-----------FVKNLVETVDEE 145
+ + + + + K +R + + KQY+ ++ +VKNL + +D+E
Sbjct: 291 DKEVKGQKLYVGRAQKKH-EREEEL---RKQYEAARLEKASKYQGVNLYVKNLTDDIDDE 346
Query: 146 ELKSHFIKFGNIIEVKIVRDEN-------------------------------------- 167
+L+ F +G I K++RD N
Sbjct: 347 KLREMFAPYGTITSAKVMRDTNIERTQTPDSDKEKKEESKEEKPEAAEKTEEAAKESGDD 406
Query: 168 -------------GKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
GKSKGFGF+ F S A KA+ EMN RMI +V+LA+
Sbjct: 407 QDKENKKSDKKVLGKSKGFGFVCFSSPDEASKAVTEMNQRMINGKPLYVALAQ 459
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 56/151 (37%), Gaps = 53/151 (35%)
Query: 20 EGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDE------ 73
E AR K + Y+ L+V NL +D++ L F +GT+ +V R+ N E
Sbjct: 319 EAARLEKASK--YQGVNLYVKNLTDDIDDEKLREMFAPYGTITSAKVMRDTNIERTQTPD 376
Query: 74 ---------------------------------------------SRGFAIIVFNTPAEA 88
S+GF + F++P EA
Sbjct: 377 SDKEKKEESKEEKPEAAEKTEEAAKESGDDQDKENKKSDKKVLGKSKGFGFVCFSSPDEA 436
Query: 89 KKARVEMNGHLIGSKPVIITFVELKPGQRSK 119
KA EMN +I KP+ + + K +RS+
Sbjct: 437 SKAVTEMNQRMINGKPLYVALAQRKDVRRSQ 467
>sp|Q4WK03|PABP_ASPFU Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 /
CBS 101355 / FGSC A1100) GN=pab1 PE=3 SV=1
Length = 753
Score = 126 bits (317), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 81/268 (30%), Positives = 128/268 (47%), Gaps = 24/268 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+PSV L F G + +RV R+ S G+A + +N A+ ++A ++
Sbjct: 54 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 113
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI KP I + + P R G VF+KNL +D + L F FG
Sbjct: 114 NYTLIKGKPCRIMWSQRDPALRKTGQG---------NVFIKNLDAAIDNKALHDTFAAFG 164
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ +DE G SKG+GF+ + + +AA AI +NG ++ FV G +
Sbjct: 165 NILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFV-------GHHIS 217
Query: 216 PKVKPPLLQPARKN--KIFVANLPSNINNSEFEELFARFGTITSSSLVSDKH-----IGF 268
K + + + N +++ N+ + + EF ++F +FG ITS++L D+ GF
Sbjct: 218 KKDRQSKFEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRGFGF 277
Query: 269 IEFIMPKHATHAVSTMNGHVFKSKPLKV 296
+ F A AV MN K + L V
Sbjct: 278 VNFSTHDSAQAAVDEMNDKEIKGQKLYV 305
Score = 121 bits (304), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 93/353 (26%), Positives = 159/353 (45%), Gaps = 70/353 (19%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK W + D R + N + + NL+ ++DN+AL + F FG +
Sbjct: 119 KGKPCRIMWSQ---RDPALRKTGQGN-------VFIKNLDAAIDNKALHDTFAAFGNILS 168
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+VA+++ S+G+ + + T A A +NG L+ K V + K ++SK
Sbjct: 169 CKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKF--- 225
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
EE + V++KN+ + V +EE + F KFG I + RD+ GKS+GFGF+ F ++ +
Sbjct: 226 EEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHDS 285
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAEIVPGK--KVFPKVKPPLLQPARKNK---IFVANLPS 238
A+ A+ EMN + I+ +V A+ + ++ + + L+ A K + ++V NL
Sbjct: 286 AQAAVDEMNDKEIKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTD 345
Query: 239 NINNSEFEELFARFGTITSSSLVSD----------------------------------- 263
++++ + ELF+ FGTITS+ ++ D
Sbjct: 346 DVDDEKLRELFSPFGTITSAKVMRDTVTTGETSESEKEKEKESNKENEKEGEEKTEEKPK 405
Query: 264 -----------------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299
K GF+ F P A+ AV+ MN + KPL V L+
Sbjct: 406 ESEEEPKKTEKKILGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALA 458
Score = 79.0 bits (193), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 100/229 (43%), Gaps = 62/229 (27%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+++ N++ V ++ F+KFG + ++R++ +SRGF + F+T A+ A EMN
Sbjct: 235 VYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHDSAQAAVDEMN 294
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKV-----------FVKNLVETVDEE 145
I + + + + K +R + + KQY+ ++ +VKNL + VD+E
Sbjct: 295 DKEIKGQKLYVGRAQKK-HEREEEL---RKQYEAARLEKASKYQGVNLYVKNLTDDVDDE 350
Query: 146 ELKSHFIKFGNIIEVKIVRDEN-------------------------------------- 167
+L+ F FG I K++RD
Sbjct: 351 KLRELFSPFGTITSAKVMRDTVTTGETSESEKEKEKESNKENEKEGEEKTEEKPKESEEE 410
Query: 168 ---------GKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
GKSKGFGF+ F S A KA+ EMN RM+ +V+LA+
Sbjct: 411 PKKTEKKILGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQ 459
Score = 62.0 bits (149), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 77/176 (43%), Gaps = 17/176 (9%)
Query: 123 PEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSY 181
P Q ++V L +V E L F G + +++ RD +S G+ ++ + +
Sbjct: 44 PSASQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 103
Query: 182 KAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNIN 241
E+A+ ++N +I+ + ++ + P L+ + +F+ NL + I+
Sbjct: 104 ADGERALEDLNYTLIKGKPCRIMWSQ-----------RDPALRKTGQGNVFIKNLDAAID 152
Query: 242 NSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSK 292
N + FA FG I S + D K GF+ + + A +A+ +NG + K
Sbjct: 153 NKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDK 208
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 55/147 (37%), Gaps = 49/147 (33%)
Query: 20 EGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKN-------- 71
E AR K + Y+ L+V NL VD++ L F FGT+ +V R+
Sbjct: 323 EAARLEKASK--YQGVNLYVKNLTDDVDDEKLRELFSPFGTITSAKVMRDTVTTGETSES 380
Query: 72 ---------------------------------------DESRGFAIIVFNTPAEAKKAR 92
+S+GF + F++P EA KA
Sbjct: 381 EKEKEKESNKENEKEGEEKTEEKPKESEEEPKKTEKKILGKSKGFGFVCFSSPDEASKAV 440
Query: 93 VEMNGHLIGSKPVIITFVELKPGQRSK 119
EMN ++ KP+ + + K +RS+
Sbjct: 441 TEMNQRMVNGKPLYVALAQRKDVRRSQ 467
>sp|A1D4K4|PABP_NEOFI Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 /
FGSC A1164 / NRRL 181) GN=pab1 PE=3 SV=1
Length = 751
Score = 126 bits (316), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 81/268 (30%), Positives = 128/268 (47%), Gaps = 24/268 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+PSV L F G + +RV R+ S G+A + +N A+ ++A ++
Sbjct: 54 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 113
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI KP I + + P R G VF+KNL +D + L F FG
Sbjct: 114 NYTLIKGKPCRIMWSQRDPALRKTGQG---------NVFIKNLDAAIDNKALHDTFAAFG 164
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
NI+ K+ +DE G SKG+GF+ + + +AA AI +NG ++ FV G +
Sbjct: 165 NILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFV-------GHHIS 217
Query: 216 PKVKPPLLQPARKN--KIFVANLPSNINNSEFEELFARFGTITSSSLVSDKH-----IGF 268
K + + + N +++ N+ + + EF ++F +FG ITS++L D+ GF
Sbjct: 218 KKDRQSKFEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRGFGF 277
Query: 269 IEFIMPKHATHAVSTMNGHVFKSKPLKV 296
+ F A AV MN K + L V
Sbjct: 278 VNFSTHDSAQAAVDEMNDKEIKGQKLYV 305
Score = 122 bits (306), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 93/351 (26%), Positives = 159/351 (45%), Gaps = 68/351 (19%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK W + D R + N + + NL+ ++DN+AL + F FG +
Sbjct: 119 KGKPCRIMWSQ---RDPALRKTGQGN-------VFIKNLDAAIDNKALHDTFAAFGNILS 168
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+VA+++ S+G+ + + T A A +NG L+ K V + K ++SK
Sbjct: 169 CKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKF--- 225
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
EE + V++KN+ + V +EE + F KFG I + RD+ GKS+GFGF+ F ++ +
Sbjct: 226 EEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHDS 285
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAEIVPGK--KVFPKVKPPLLQPARKNK---IFVANLPS 238
A+ A+ EMN + I+ +V A+ + ++ + + L+ A K + ++V NL
Sbjct: 286 AQAAVDEMNDKEIKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTD 345
Query: 239 NINNSEFEELFARFGTITSSSLVSD----------------------------------- 263
++++ + ELF+ FGTITS+ ++ D
Sbjct: 346 DVDDEKLRELFSPFGTITSAKVMRDTVTAGETSESEKEKESNKENEKEGEEKTEEKPKES 405
Query: 264 ---------------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299
K GF+ F P A+ AV+ MN + KPL V L+
Sbjct: 406 EEEAKKTEKKILGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALA 456
Score = 79.7 bits (195), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/227 (26%), Positives = 100/227 (44%), Gaps = 60/227 (26%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+++ N++ V ++ F+KFG + ++R++ +SRGF + F+T A+ A EMN
Sbjct: 235 VYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHDSAQAAVDEMN 294
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKV-----------FVKNLVETVDEE 145
I + + + + K +R + + KQY+ ++ +VKNL + VD+E
Sbjct: 295 DKEIKGQKLYVGRAQKK-HEREEEL---RKQYEAARLEKASKYQGVNLYVKNLTDDVDDE 350
Query: 146 ELKSHFIKFGNIIEVKIVRDEN-------------------------------------- 167
+L+ F FG I K++RD
Sbjct: 351 KLRELFSPFGTITSAKVMRDTVTAGETSESEKEKESNKENEKEGEEKTEEKPKESEEEAK 410
Query: 168 -------GKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
GKSKGFGF+ F S A KA+ EMN RM+ +V+LA+
Sbjct: 411 KTEKKILGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQ 457
Score = 63.2 bits (152), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/219 (22%), Positives = 93/219 (42%), Gaps = 22/219 (10%)
Query: 81 VFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVG-PEEKQYKKDKVFVKNLV 139
V TPA A +NG + P + E+ + + P P Q ++V L
Sbjct: 5 VSTTPA----ADNTVNGTPEATNPAATSAPEVTAVESASPSATPSANQPHSASLYVGELD 60
Query: 140 ETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQH 198
+V E L F G + +++ RD +S G+ ++ + + E+A+ ++N +I+
Sbjct: 61 PSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKG 120
Query: 199 NSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSS 258
+ ++ + P L+ + +F+ NL + I+N + FA FG I S
Sbjct: 121 KPCRIMWSQ-----------RDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSC 169
Query: 259 SLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSK 292
+ D K GF+ + + A +A+ +NG + K
Sbjct: 170 KVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDK 208
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 55/145 (37%), Gaps = 47/145 (32%)
Query: 20 EGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKN-------- 71
E AR K + Y+ L+V NL VD++ L F FGT+ +V R+
Sbjct: 323 EAARLEKASK--YQGVNLYVKNLTDDVDDEKLRELFSPFGTITSAKVMRDTVTAGETSES 380
Query: 72 -------------------------------------DESRGFAIIVFNTPAEAKKARVE 94
+S+GF + F++P EA KA E
Sbjct: 381 EKEKESNKENEKEGEEKTEEKPKESEEEAKKTEKKILGKSKGFGFVCFSSPDEASKAVTE 440
Query: 95 MNGHLIGSKPVIITFVELKPGQRSK 119
MN ++ KP+ + + K +RS+
Sbjct: 441 MNQRMVNGKPLYVALAQRKDVRRSQ 465
>sp|O64380|PABP3_ARATH Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3
PE=2 SV=1
Length = 660
Score = 125 bits (315), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 78/290 (26%), Positives = 156/290 (53%), Gaps = 14/290 (4%)
Query: 24 SNKE-NNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVF 82
SN++ + ++ + + + NL+ S+DN+AL F FGT+ +VA + S+G+ + F
Sbjct: 124 SNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQF 183
Query: 83 NTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETV 142
A+ A ++NG L+ K V + ++ +R++ ++ V+VKNL + +
Sbjct: 184 EKEESAQAAIDKLNGMLMNDKQVFVGHF-IRRQERARDENTPTPRFTN--VYVKNLPKEI 240
Query: 143 DEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTF 202
E+EL+ F KFG I ++RD++G S+ FGF+ F +AA A+ +MNG + + +
Sbjct: 241 GEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLY 300
Query: 203 VSLAEIVPGK-----KVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITS 257
V A+ + + F + + + ++ +++ NL ++++ + +E+F+ +G +TS
Sbjct: 301 VGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTS 360
Query: 258 SSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
S ++ + + GF+ + P+ A A+S MNG + KPL + L+ K
Sbjct: 361 SKVMLNPQGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALAQRK 410
Score = 121 bits (304), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 76/263 (28%), Positives = 126/263 (47%), Gaps = 19/263 (7%)
Query: 29 NKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEA 88
++ + + L+ +L+P V L + FK + VRV R++N S G+A I F+ P +A
Sbjct: 43 DQTHPNSSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDA 102
Query: 89 KKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELK 148
+A +N + +P+ I P R K +F+KNL ++D + L
Sbjct: 103 YRAMEALNYTPLFDRPIRIMLSNRDPSTRLS---------GKGNIFIKNLDASIDNKALF 153
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEI 208
F FG I+ K+ D G+SKG+GF+QF ++A+ AI ++NG ++ FV
Sbjct: 154 ETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFV--GHF 211
Query: 209 VPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----- 263
+ ++ P R ++V NLP I E + F +FG I+S+ ++ D
Sbjct: 212 IRRQERARDENTPT---PRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNS 268
Query: 264 KHIGFIEFIMPKHATHAVSTMNG 286
+ GF+ F + A AV MNG
Sbjct: 269 RCFGFVNFECTEAAASAVEKMNG 291
Score = 90.5 bits (223), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 102/193 (52%), Gaps = 9/193 (4%)
Query: 23 RSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVF 82
R+ EN + ++V NL + L F KFG + V R+++ SR F + F
Sbjct: 217 RARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNF 276
Query: 83 NTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDK--------VF 134
A A +MNG +G + + + K +R + + + +Q + ++ ++
Sbjct: 277 ECTEAAASAVEKMNGISLGDDVLYVGRAQ-KKSEREEELRRKFEQERINRFEKSQGANLY 335
Query: 135 VKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGR 194
+KNL ++VD+E+LK F ++GN+ K++ + G S+GFGF+ + + + A +A+ EMNG+
Sbjct: 336 LKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMNGK 395
Query: 195 MIQHNSTFVSLAE 207
MI +++LA+
Sbjct: 396 MIGRKPLYIALAQ 408
Score = 66.6 bits (161), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 81/178 (45%), Gaps = 16/178 (8%)
Query: 120 PVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFF 179
PV ++ + ++ +L V E L F N++ V++ RD+N +S G+ +I F
Sbjct: 38 PVVVADQTHPNSSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFS 97
Query: 180 SYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSN 239
+ A +A+ +N + + L+ P ++ + K IF+ NL ++
Sbjct: 98 NPNDAYRAMEALNYTPLFDRPIRIMLSNRDPSTRL-----------SGKGNIFIKNLDAS 146
Query: 240 INNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSK 292
I+N E F+ FGTI S + D K GF++F + A A+ +NG + K
Sbjct: 147 IDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDK 204
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 48/82 (58%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L++ NL+ SVD++ L F ++G + +V N SRGF + ++ P EA +A EMN
Sbjct: 334 LYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMN 393
Query: 97 GHLIGSKPVIITFVELKPGQRS 118
G +IG KP+ I + K +R+
Sbjct: 394 GKMIGRKPLYIALAQRKEDRRA 415
>sp|P04147|PABP_YEAST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PAB1 PE=1 SV=4
Length = 577
Score = 125 bits (313), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 84/309 (27%), Positives = 150/309 (48%), Gaps = 23/309 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KG++ W + D R N + + NL P +DN+AL + F FG +
Sbjct: 105 KGRLCRIMWSQ---RDPSLRKKGSGN-------IFIKNLHPDIDNKALYDTFSVFGDILS 154
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
++A ++N +S+GF + F AK+A +NG L+ + + + L +R +
Sbjct: 155 SKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVA-PHLSRKERDSQL-- 211
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
EE + ++VKN+ +E+ + F KFG I+ + +D +GK KGFGF+ + ++
Sbjct: 212 EETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHED 271
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A KA+ +N + +V A+ + KK + + + + +FV NL
Sbjct: 272 AVKAVEALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDD 331
Query: 239 NINNSEFEELFARFGTITSSSLVS-----DKHIGFIEFIMPKHATHAVSTMNGHVFKSKP 293
++++ + EE FA +GTITS+ ++ K GF+ F P+ AT A++ N + KP
Sbjct: 332 SVDDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKP 391
Query: 294 LKVTLSGTK 302
L V ++ K
Sbjct: 392 LYVAIAQRK 400
Score = 121 bits (303), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 85/268 (31%), Positives = 130/268 (48%), Gaps = 24/268 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +LEPSV L + F G++ +RV R+ S G+A + FN +KA ++
Sbjct: 40 LYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQL 99
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N I + I + + P R K G +F+KNL +D + L F FG
Sbjct: 100 NYTPIKGRLCRIMWSQRDPSLRKKGSG---------NIFIKNLHPDIDNKALYDTFSVFG 150
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
+I+ KI DENGKSKGFGF+ F AA++AI +NG ++ +V+ +
Sbjct: 151 DILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVA-------PHLS 203
Query: 216 PKVKPPLLQP--ARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGF 268
K + L+ A ++V N+ S + +F+ELFA+FG I S+SL D K GF
Sbjct: 204 RKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGF 263
Query: 269 IEFIMPKHATHAVSTMNGHVFKSKPLKV 296
+ + + A AV +N + L V
Sbjct: 264 VNYEKHEDAVKAVEALNDSELNGEKLYV 291
Score = 68.9 bits (167), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 52/88 (59%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L V NL+ SVD++ L EF +GT+ +V R +N +S+GF + F+TP EA KA
Sbjct: 319 YQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKA 378
Query: 92 RVEMNGHLIGSKPVIITFVELKPGQRSK 119
E N ++ KP+ + + K +RS+
Sbjct: 379 ITEKNQQIVAGKPLYVAIAQRKDVRRSQ 406
>sp|A1CRM1|PABP_ASPCL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 /
DSM 816 / NCTC 3887 / NRRL 1) GN=pab1 PE=3 SV=1
Length = 754
Score = 124 bits (311), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 82/277 (29%), Positives = 131/277 (47%), Gaps = 24/277 (8%)
Query: 28 NNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPA 86
NN L+V L+PSV L F G + +RV R+ S G+A + +N A
Sbjct: 44 NNNQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTA 103
Query: 87 EAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEE 146
+ ++A ++N LI KP I + + P R G VF+KNL +D +
Sbjct: 104 DGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQG---------NVFIKNLDSAIDNKA 154
Query: 147 LKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLA 206
L F FGNI+ K+ +DE G SKG+GF+ + + +AA AI +NG ++ FV
Sbjct: 155 LHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFV--- 211
Query: 207 EIVPGKKVFPKVKPPLLQPARKN--KIFVANLPSNINNSEFEELFARFGTITSSSLVSD- 263
G + K + + N I++ N+ ++ EF ++F +FG ITS++L D
Sbjct: 212 ----GHHISKKDRQSKFDEMKANFTNIYIKNIDPDVTEEEFRKIFEQFGEITSATLSRDP 267
Query: 264 ----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
+ GF+ + + A AV M+ K++ L V
Sbjct: 268 EGKSRGFGFVNYSTHESAQAAVDEMHDKEVKTQKLYV 304
Score = 108 bits (269), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 72/265 (27%), Positives = 137/265 (51%), Gaps = 18/265 (6%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK W + D R + N + + NL+ ++DN+AL + F FG +
Sbjct: 118 KGKPCRIMWSQ---RDPALRKTGQGN-------VFIKNLDSAIDNKALHDTFAAFGNILS 167
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+VA+++ S+G+ + + T A A +NG L+ K V + K ++SK
Sbjct: 168 CKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKF--- 224
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
+E + +++KN+ V EEE + F +FG I + RD GKS+GFGF+ + ++++
Sbjct: 225 DEMKANFTNIYIKNIDPDVTEEEFRKIFEQFGEITSATLSRDPEGKSRGFGFVNYSTHES 284
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAEIVPGK--KVFPKVKPPLLQPARKNK---IFVANLPS 238
A+ A+ EM+ + ++ +V A+ + ++ + + L+ A K + ++V NL
Sbjct: 285 AQAAVDEMHDKEVKTQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTD 344
Query: 239 NINNSEFEELFARFGTITSSSLVSD 263
++++ + ELF +GTITS+ ++ D
Sbjct: 345 DVDDEKLRELFGPYGTITSAKVMRD 369
Score = 75.1 bits (183), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 56/235 (23%), Positives = 100/235 (42%), Gaps = 68/235 (28%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+++ N++P V + F++FG + ++R+ +SRGF + ++T A+ A EM+
Sbjct: 234 IYIKNIDPDVTEEEFRKIFEQFGEITSATLSRDPEGKSRGFGFVNYSTHESAQAAVDEMH 293
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKV-----------FVKNLVETVDEE 145
+ ++ + + + K +R + + KQY+ ++ +VKNL + VD+E
Sbjct: 294 DKEVKTQKLYVGRAQKK-HEREEEL---RKQYEAARLEKASKYQGVNLYVKNLTDDVDDE 349
Query: 146 ELKSHFIKFGNIIEVKIVRDEN-------------------------------------- 167
+L+ F +G I K++RD
Sbjct: 350 KLRELFGPYGTITSAKVMRDSTPAERTETPDSEKEKEVNKENEKKEDEEKAAEEKPKESD 409
Query: 168 ---------------GKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
GKSKGFGF+ F S A KA+ EMN RM+ +V+LA+
Sbjct: 410 EEKKDETKKSDKKLLGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQ 464
Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 57/153 (37%), Gaps = 55/153 (35%)
Query: 20 EGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARN---------- 69
E AR K + Y+ L+V NL VD++ L F +GT+ +V R+
Sbjct: 322 EAARLEKASK--YQGVNLYVKNLTDDVDDEKLRELFGPYGTITSAKVMRDSTPAERTETP 379
Query: 70 --------------------------------KNDE-----------SRGFAIIVFNTPA 86
K DE S+GF + F++P
Sbjct: 380 DSEKEKEVNKENEKKEDEEKAAEEKPKESDEEKKDETKKSDKKLLGKSKGFGFVCFSSPD 439
Query: 87 EAKKARVEMNGHLIGSKPVIITFVELKPGQRSK 119
EA KA EMN ++ KP+ + + K +RS+
Sbjct: 440 EASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQ 472
Score = 33.5 bits (75), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 22/43 (51%)
Query: 260 LVSDKHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
L K GF+ F P A+ AV+ MN + KPL V L+ K
Sbjct: 424 LGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRK 466
>sp|Q05196|PABP5_ARATH Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5
PE=1 SV=3
Length = 682
Score = 124 bits (311), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 75/262 (28%), Positives = 127/262 (48%), Gaps = 19/262 (7%)
Query: 30 KVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAK 89
+ + + L+V +L+PSV+ L++ F + + ++RV R+ S G+A + F P +A
Sbjct: 54 QTHPNSSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDAS 113
Query: 90 KARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKS 149
+A +N I +P+ I P R K VF+KNL ++D + L
Sbjct: 114 RAMESLNYAPIRDRPIRIMLSNRDPSTRLS---------GKGNVFIKNLDASIDNKALYE 164
Query: 150 HFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIV 209
F FG I+ K+ D G+SKG+GF+QF + A+ AI ++NG ++ FV
Sbjct: 165 TFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRR 224
Query: 210 PGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----K 264
+ P ++V NLP I + E ++ F ++G I+S+ ++ D +
Sbjct: 225 QDRARSESGAVPSF-----TNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSR 279
Query: 265 HIGFIEFIMPKHATHAVSTMNG 286
GF+ F+ P+ A AV MNG
Sbjct: 280 SFGFVNFVSPEAAAVAVEKMNG 301
Score = 122 bits (306), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 80/291 (27%), Positives = 154/291 (52%), Gaps = 16/291 (5%)
Query: 24 SNKE-NNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVF 82
SN++ + ++ + + + NL+ S+DN+AL F FGT+ +VA + S+G+ + F
Sbjct: 134 SNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYGFVQF 193
Query: 83 NTPAEAKKARVEMNGHLIGSKPVIIT-FVELKPGQRSKPVGPEEKQYKKDKVFVKNLVET 141
A+ A ++NG L+ K V + FV + RS+ V+VKNL +
Sbjct: 194 EKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSE----SGAVPSFTNVYVKNLPKE 249
Query: 142 VDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNST 201
+ ++ELK F K+G+I +++D++G S+ FGF+ F S +AA A+ +MNG + +
Sbjct: 250 ITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVL 309
Query: 202 FVSLAEIVPGK-----KVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTIT 256
+V A+ + + F + + + + + +++ NL ++N+ + +E+F+ +G +T
Sbjct: 310 YVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLKEMFSEYGNVT 369
Query: 257 SSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
S ++ + + GF+ + P+ A A+ MNG + KPL V L+ K
Sbjct: 370 SCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALAQRK 420
Score = 85.9 bits (211), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 100/199 (50%), Gaps = 21/199 (10%)
Query: 23 RSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVF 82
R+ E+ V ++V NL + + L F K+G + V ++++ SR F + F
Sbjct: 227 RARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNF 286
Query: 83 NTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKK------------ 130
+P A A +MNG +G + + G+ K EE+ +K
Sbjct: 287 VSPEAAAVAVEKMNGISLGEDVLYV-------GRAQKKSDREEELRRKFEQERISRFEKL 339
Query: 131 --DKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAI 188
+++KNL ++V++E+LK F ++GN+ K++ + G S+GFGF+ + + + A A+
Sbjct: 340 QGSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAM 399
Query: 189 IEMNGRMIQHNSTFVSLAE 207
EMNG+MI +V+LA+
Sbjct: 400 KEMNGKMIGRKPLYVALAQ 418
>sp|P0CP46|PABP_CRYNJ Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Cryptococcus neoformans var. neoformans serotype D
(strain JEC21 / ATCC MYA-565) GN=PAB1 PE=3 SV=1
Length = 673
Score = 124 bits (310), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 91/311 (29%), Positives = 153/311 (49%), Gaps = 27/311 (8%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KG+ W + D R + N + + NL+ S+DN+AL + F FG +
Sbjct: 113 KGQSCRIMWSQ---RDPALRKTGQGN-------IFIKNLDQSIDNKALHDTFAAFGDILS 162
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V ++N +SRGFA + ++T A A +NG L+ K V +V G++ +
Sbjct: 163 CKVGTDENGKSRGFAFVHYSTGEAADAAIKAVNGMLLNDKKV---YVGHHVGKKERLSKV 219
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
EE + + V++KN+ V + E + FG I V + RDE G SKGFGF+ + ++++
Sbjct: 220 EELRAQFTNVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRDEKGVSKGFGFVNYENHES 279
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNK-------IFVANL 236
A KA+ E+N + + + A+ ++ ++K + +N+ ++V NL
Sbjct: 280 ARKAVDELNEKEVNGKKLYAGRAQTKSEREA--ELKKSHEEKRLENEAKSAGVNLYVKNL 337
Query: 237 PSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKS 291
++ F FGTITSS ++ D + GF+ + P AT AVS MNG + +
Sbjct: 338 DDEWDDDRLRAEFEAFGTITSSKVMRDDSGVSRGFGFVCYSSPDEATKAVSEMNGKMIGT 397
Query: 292 KPLKVTLSGTK 302
KPL V L+ K
Sbjct: 398 KPLYVALAQRK 408
Score = 105 bits (263), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 78/272 (28%), Positives = 130/272 (47%), Gaps = 20/272 (7%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+PSV L F G + +RV R+ S G+A + + A+ ++A +
Sbjct: 48 LYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEHL 107
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI + I + + P R G +F+KNL +++D + L F FG
Sbjct: 108 NYSLIKGQSCRIMWSQRDPALRKTGQG---------NIFIKNLDQSIDNKALHDTFAAFG 158
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
+I+ K+ DENGKS+GF F+ + + +AA+ AI +NG ++ +V V K+
Sbjct: 159 DILSCKVGTDENGKSRGFAFVHYSTGEAADAAIKAVNGMLLNDKKVYV--GHHVGKKERL 216
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIE 270
KV+ L+ A+ +++ N+ + ++EFE+L FG S +L D K GF+
Sbjct: 217 SKVE--ELR-AQFTNVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRDEKGVSKGFGFVN 273
Query: 271 FIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
+ + A AV +N K L + TK
Sbjct: 274 YENHESARKAVDELNEKEVNGKKLYAGRAQTK 305
>sp|P0CP47|PABP_CRYNB Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Cryptococcus neoformans var. neoformans serotype D
(strain B-3501A) GN=PAB1 PE=3 SV=1
Length = 673
Score = 124 bits (310), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 91/311 (29%), Positives = 153/311 (49%), Gaps = 27/311 (8%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KG+ W + D R + N + + NL+ S+DN+AL + F FG +
Sbjct: 113 KGQSCRIMWSQ---RDPALRKTGQGN-------IFIKNLDQSIDNKALHDTFAAFGDILS 162
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+V ++N +SRGFA + ++T A A +NG L+ K V +V G++ +
Sbjct: 163 CKVGTDENGKSRGFAFVHYSTGEAADAAIKAVNGMLLNDKKV---YVGHHVGKKERLSKV 219
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
EE + + V++KN+ V + E + FG I V + RDE G SKGFGF+ + ++++
Sbjct: 220 EELRAQFTNVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRDEKGVSKGFGFVNYENHES 279
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNK-------IFVANL 236
A KA+ E+N + + + A+ ++ ++K + +N+ ++V NL
Sbjct: 280 ARKAVDELNEKEVNGKKLYAGRAQTKSEREA--ELKKSHEEKRLENEAKSAGVNLYVKNL 337
Query: 237 PSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKS 291
++ F FGTITSS ++ D + GF+ + P AT AVS MNG + +
Sbjct: 338 DDEWDDDRLRAEFEAFGTITSSKVMRDDSGVSRGFGFVCYSSPDEATKAVSEMNGKMIGT 397
Query: 292 KPLKVTLSGTK 302
KPL V L+ K
Sbjct: 398 KPLYVALAQRK 408
Score = 105 bits (263), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 78/272 (28%), Positives = 130/272 (47%), Gaps = 20/272 (7%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+PSV L F G + +RV R+ S G+A + + A+ ++A +
Sbjct: 48 LYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEHL 107
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI + I + + P R G +F+KNL +++D + L F FG
Sbjct: 108 NYSLIKGQSCRIMWSQRDPALRKTGQG---------NIFIKNLDQSIDNKALHDTFAAFG 158
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
+I+ K+ DENGKS+GF F+ + + +AA+ AI +NG ++ +V V K+
Sbjct: 159 DILSCKVGTDENGKSRGFAFVHYSTGEAADAAIKAVNGMLLNDKKVYV--GHHVGKKERL 216
Query: 216 PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIE 270
KV+ L+ A+ +++ N+ + ++EFE+L FG S +L D K GF+
Sbjct: 217 SKVE--ELR-AQFTNVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRDEKGVSKGFGFVN 273
Query: 271 FIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
+ + A AV +N K L + TK
Sbjct: 274 YENHESARKAVDELNEKEVNGKKLYAGRAQTK 305
>sp|Q6BI95|PABP_DEBHA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 /
JCM 1990 / NBRC 0083 / IGC 2968) GN=PAB1 PE=3 SV=2
Length = 627
Score = 122 bits (306), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 92/309 (29%), Positives = 150/309 (48%), Gaps = 23/309 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
+G+ W + D R N + N + + NL P++DN+AL + F FG +
Sbjct: 118 EGRPCRIMWSQ---RDPSLRRNGDGN-------IFIKNLHPAIDNKALHDTFTAFGKILS 167
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+VA + S+ F + + T A+ A +NG L+ + V + K + SK
Sbjct: 168 CKVATDDMGISKCFGFVHYETAEAAEAAIENVNGMLLNDREVYVGKHISKKDRESK---F 224
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
EE + V+ KN+ EEE K F +G I + + +D GKSKGFGF+ F ++++
Sbjct: 225 EEMKANFTNVYAKNIDLDFSEEEFKKLFEAYGKITSIYLEKDHEGKSKGFGFVNFENHES 284
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A KA+ E+N + I +V A+ + KK + + L + +F+ NL
Sbjct: 285 AVKAVDELNDKEINGQKIYVGRAQKKRERLEELKKQYENTRLEKLSKYQGVNLFIKNLDD 344
Query: 239 NINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKP 293
I++ + EE F FG+ITS+ ++ D K GF+ F P+ AT A++ MN + KP
Sbjct: 345 TIDSEKLEEEFKPFGSITSARVMVDETGKSKGFGFVCFSSPEEATKAITEMNQRMIYGKP 404
Query: 294 LKVTLSGTK 302
L V L+ K
Sbjct: 405 LYVALAQRK 413
Score = 96.7 bits (239), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 75/257 (29%), Positives = 121/257 (47%), Gaps = 24/257 (9%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L PSV+ L F G + +RV R+ +S G+A + F+ + +KA ++
Sbjct: 53 LYVGELNPSVNEALLFEIFSPIGQVASIRVCRDAVTKKSLGYAYVNFHKFEDGEKAIEDL 112
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI +P I + + P R G +F+KNL +D + L F FG
Sbjct: 113 NYSLIEGRPCRIMWSQRDPSLRRNGDG---------NIFIKNLHPAIDNKALHDTFTAFG 163
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF 215
I+ K+ D+ G SK FGF+ + + +AAE AI +NG ++ +V GK +
Sbjct: 164 KILSCKVATDDMGISKCFGFVHYETAEAAEAAIENVNGMLLNDREVYV-------GKHIS 216
Query: 216 PKVKPPLLQPARKN--KIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGF 268
K + + + N ++ N+ + + EF++LF +G ITS L D K GF
Sbjct: 217 KKDRESKFEEMKANFTNVYAKNIDLDFSEEEFKKLFEAYGKITSIYLEKDHEGKSKGFGF 276
Query: 269 IEFIMPKHATHAVSTMN 285
+ F + A AV +N
Sbjct: 277 VNFENHESAVKAVDELN 293
Score = 66.2 bits (160), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 53/88 (60%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L + NL+ ++D++ L EFK FG++ RV ++ +S+GF + F++P EA KA
Sbjct: 332 YQGVNLFIKNLDDTIDSEKLEEEFKPFGSITSARVMVDETGKSKGFGFVCFSSPEEATKA 391
Query: 92 RVEMNGHLIGSKPVIITFVELKPGQRSK 119
EMN +I KP+ + + K +RS+
Sbjct: 392 ITEMNQRMIYGKPLYVALAQRKDVRRSQ 419
>sp|Q6FKG4|PABP_CANGA Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=PAB1 PE=3 SV=1
Length = 579
Score = 119 bits (299), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 86/286 (30%), Positives = 134/286 (46%), Gaps = 24/286 (8%)
Query: 19 DEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGF 77
D+ +N+EN L+V +L+PSV L + F G + +RV R+ S G+
Sbjct: 19 DKQEGTNEENQSETVSASLYVGDLDPSVSEAHLYDIFSPIGAVSSIRVCRDAITKTSLGY 78
Query: 78 AIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKN 137
A + FN AK A ++N I K I + + P R K G +F+KN
Sbjct: 79 AYVNFNDHDAAKTAIEKLNFTPIKGKLCRIMWSQRDPSLRKKGAG---------NIFIKN 129
Query: 138 LVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQ 197
L +D + L F FGNI+ K+ DE GKSKGFG++ F ++A +AI +NG ++
Sbjct: 130 LHPDIDNKALYDTFSVFGNILSSKVATDETGKSKGFGYVHFEEDESASEAIDALNGMLLN 189
Query: 198 HNSTFVSLAEIVPGKKVFPKVKPPLLQPARKN--KIFVANLPSNINNSEFEELFARFGTI 255
+V G + K + + + N +++ N+ + + EFEEL A+FG
Sbjct: 190 GQEIYV-------GPHLSKKERESKFEEMKANFTNVYIKNINTETTDKEFEELVAKFGKT 242
Query: 256 TSSSLV-----SDKHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
S L +K GF+ F+ + A V +N FK +PL V
Sbjct: 243 DSVVLERTPEGENKGFGFVNFVNHEDAVKCVEELNNTEFKGQPLYV 288
Score = 114 bits (284), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 84/309 (27%), Positives = 147/309 (47%), Gaps = 23/309 (7%)
Query: 4 KGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD 63
KGK+ W + D R N + + NL P +DN+AL + F FG +
Sbjct: 102 KGKLCRIMWSQ---RDPSLRKKGAGN-------IFIKNLHPDIDNKALYDTFSVFGNILS 151
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+VA ++ +S+GF + F A +A +NG L+ + + + K + SK
Sbjct: 152 SKVATDETGKSKGFGYVHFEEDESASEAIDALNGMLLNGQEIYVGPHLSKKERESKF--- 208
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
EE + V++KN+ ++E + KFG V + R G++KGFGF+ F +++
Sbjct: 209 EEMKANFTNVYIKNINTETTDKEFEELVAKFGKTDSVVLERTPEGENKGFGFVNFVNHED 268
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE-----IVPGKKVFPKVKPPLLQPARKNKIFVANLPS 238
A K + E+N + +V+ A+ KK + + + + +F+ NL
Sbjct: 269 AVKCVEELNNTEFKGQPLYVNRAQKKYERQQELKKQYEATRMEKMAKYQGINLFIKNLDD 328
Query: 239 NINNSEFEELFARFGTITSSSLVS-----DKHIGFIEFIMPKHATHAVSTMNGHVFKSKP 293
+I++ + EE FA +GTITS+ +++ K GF+ F P+ AT A++ N + KP
Sbjct: 329 SIDDKKLEEEFAPYGTITSAKVMTTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKP 388
Query: 294 LKVTLSGTK 302
L V ++ K
Sbjct: 389 LYVAIAQRK 397
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 51/88 (57%)
Query: 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKA 91
Y+ L + NL+ S+D++ L EF +GT+ +V +N +S+GF + F+TP EA KA
Sbjct: 316 YQGINLFIKNLDDSIDDKKLEEEFAPYGTITSAKVMTTENGKSKGFGFVCFSTPEEATKA 375
Query: 92 RVEMNGHLIGSKPVIITFVELKPGQRSK 119
E N ++ KP+ + + K +RS+
Sbjct: 376 ITEKNQQIVAGKPLYVAIAQRKDVRRSQ 403
>sp|Q9ZQA8|PABPX_ARATH Probable polyadenylate-binding protein At2g36660 OS=Arabidopsis
thaliana GN=At2g36660 PE=3 SV=1
Length = 609
Score = 117 bits (293), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 89/308 (28%), Positives = 145/308 (47%), Gaps = 27/308 (8%)
Query: 5 GKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDV 64
GK++ W D AR N N + V NL SV N L + FKKFG +
Sbjct: 92 GKMIRVMWSVRAPD---ARRNGVGN-------VFVKNLPESVTNAVLQDMFKKFGNIVSC 141
Query: 65 RVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPE 124
+VA ++ +SRG+ + F A A +N ++ K + + K +++ V PE
Sbjct: 142 KVATLEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVG----KFMKKTDRVKPE 197
Query: 125 EKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAA 184
EK +++KNL V E+ L+ F +FG I+ + I +DEN +G+ F+ F + + A
Sbjct: 198 EKY---TNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDA 254
Query: 185 EKAIIEMNGRMIQHNSTFVSLAEIVPG-----KKVFPKVKPPLLQPARKNKIFVANLPSN 239
+A +NG +V A+ ++ F + A+ + I+V N+
Sbjct: 255 RRAAETVNGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVA 314
Query: 240 INNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
+ E + F++ GTITS+ L+ D K GF+ F P+ A AV T +G +F KPL
Sbjct: 315 VTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPL 374
Query: 295 KVTLSGTK 302
V ++ K
Sbjct: 375 YVAIAQKK 382
Score = 115 bits (288), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 87/268 (32%), Positives = 130/268 (48%), Gaps = 28/268 (10%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKND-ESRGFAIIVFNTPAEAKKARVEM 95
L+V +L PSV L + F +F +L VR+ ++ + S + F + +A A +
Sbjct: 26 LYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEKK 85
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N L+ K + + + P R VG VFVKNL E+V L+ F KFG
Sbjct: 86 NNSLLNGKMIRVMWSVRAPDARRNGVG---------NVFVKNLPESVTNAVLQDMFKKFG 136
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGK--K 213
NI+ K+ E+GKS+G+GF+QF AA AI + NST V+ EI GK K
Sbjct: 137 NIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTL-------NSTIVADKEIYVGKFMK 189
Query: 214 VFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKH-----IGF 268
+VKP + +++ NL ++++ E FA FG I S ++ D++ F
Sbjct: 190 KTDRVKP----EEKYTNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAF 245
Query: 269 IEFIMPKHATHAVSTMNGHVFKSKPLKV 296
+ F P+ A A T+NG F SK L V
Sbjct: 246 VNFDNPEDARRAAETVNGTKFGSKCLYV 273
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.133 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 127,658,040
Number of Sequences: 539616
Number of extensions: 5450194
Number of successful extensions: 16857
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 462
Number of HSP's successfully gapped in prelim test: 538
Number of HSP's that attempted gapping in prelim test: 12731
Number of HSP's gapped (non-prelim): 2854
length of query: 333
length of database: 191,569,459
effective HSP length: 118
effective length of query: 215
effective length of database: 127,894,771
effective search space: 27497375765
effective search space used: 27497375765
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 61 (28.1 bits)