Query psy8956
Match_columns 333
No_of_seqs 149 out of 1874
Neff 10.6
Searched_HMMs 46136
Date Fri Aug 16 23:52:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8956.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8956hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 7.1E-46 1.5E-50 327.3 33.8 261 33-304 2-351 (352)
2 TIGR01628 PABP-1234 polyadenyl 100.0 3.2E-44 6.9E-49 334.2 30.1 286 2-303 66-365 (562)
3 KOG0117|consensus 100.0 2.2E-42 4.8E-47 288.5 25.6 252 31-309 80-338 (506)
4 TIGR01628 PABP-1234 polyadenyl 100.0 2.6E-41 5.6E-46 314.7 30.6 253 36-305 2-264 (562)
5 TIGR01648 hnRNP-R-Q heterogene 100.0 4.8E-41 1E-45 302.5 31.2 248 30-304 54-309 (578)
6 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 4.2E-40 9.1E-45 299.0 35.0 263 33-303 1-352 (481)
7 KOG0145|consensus 100.0 8.3E-41 1.8E-45 260.5 24.4 262 31-303 38-359 (360)
8 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 3E-39 6.5E-44 293.5 35.4 291 2-302 64-480 (481)
9 TIGR01622 SF-CC1 splicing fact 100.0 3.6E-38 7.7E-43 287.4 34.7 272 31-303 86-449 (457)
10 KOG0144|consensus 100.0 4.8E-39 1E-43 267.4 21.1 266 29-304 29-506 (510)
11 TIGR01645 half-pint poly-U bin 100.0 2.6E-37 5.7E-42 278.7 30.6 176 33-208 106-283 (612)
12 TIGR01642 U2AF_lg U2 snRNP aux 100.0 1E-36 2.2E-41 281.6 31.0 265 31-301 172-501 (509)
13 KOG0123|consensus 100.0 2.5E-36 5.4E-41 260.7 20.5 282 3-306 62-353 (369)
14 KOG0127|consensus 100.0 4.4E-35 9.5E-40 250.5 25.9 269 35-303 6-379 (678)
15 KOG0148|consensus 100.0 3.5E-35 7.5E-40 230.4 20.5 235 32-306 4-242 (321)
16 KOG0123|consensus 100.0 2.6E-31 5.6E-36 229.6 23.0 238 36-301 3-245 (369)
17 TIGR01659 sex-lethal sex-letha 100.0 2.8E-30 6E-35 222.2 21.6 171 30-211 103-277 (346)
18 KOG0124|consensus 100.0 5.5E-31 1.2E-35 215.1 13.3 263 35-297 114-530 (544)
19 KOG0110|consensus 100.0 8.7E-29 1.9E-33 218.6 19.9 268 28-304 379-695 (725)
20 KOG0147|consensus 100.0 1.8E-29 3.9E-34 217.2 14.9 277 26-303 171-529 (549)
21 TIGR01659 sex-lethal sex-letha 100.0 2.9E-28 6.3E-33 209.7 22.3 167 126-305 103-278 (346)
22 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 1.8E-27 3.8E-32 210.2 24.0 197 2-210 69-350 (352)
23 KOG0148|consensus 100.0 5.2E-28 1.1E-32 190.2 18.0 193 7-211 42-240 (321)
24 TIGR01645 half-pint poly-U bin 100.0 1.3E-27 2.7E-32 216.2 23.0 176 129-306 106-288 (612)
25 KOG0127|consensus 100.0 6.4E-28 1.4E-32 206.8 18.4 283 2-284 71-516 (678)
26 KOG4212|consensus 99.9 6.6E-25 1.4E-29 183.6 26.1 181 25-205 35-290 (608)
27 TIGR01648 hnRNP-R-Q heterogene 99.9 3.3E-25 7.1E-30 200.4 22.0 211 34-257 138-370 (578)
28 TIGR01622 SF-CC1 splicing fact 99.9 5.9E-25 1.3E-29 200.6 23.6 172 128-301 87-265 (457)
29 KOG0144|consensus 99.9 1.5E-25 3.2E-30 187.2 13.7 170 126-307 30-211 (510)
30 TIGR01642 U2AF_lg U2 snRNP aux 99.9 6E-24 1.3E-28 196.7 23.5 177 32-208 293-501 (509)
31 KOG0145|consensus 99.9 3.7E-24 7.9E-29 167.6 15.9 168 126-306 37-213 (360)
32 KOG1190|consensus 99.9 3.7E-23 8.1E-28 171.8 22.4 265 29-301 23-372 (492)
33 KOG1456|consensus 99.9 1.7E-21 3.6E-26 160.3 25.9 288 22-322 19-383 (494)
34 KOG0131|consensus 99.9 1.5E-23 3.3E-28 155.7 12.5 168 35-212 10-180 (203)
35 KOG0109|consensus 99.9 9.2E-24 2E-28 168.0 11.7 150 131-304 3-152 (346)
36 KOG0131|consensus 99.9 3.8E-23 8.1E-28 153.7 12.4 168 127-306 6-181 (203)
37 KOG0109|consensus 99.9 3.3E-23 7.1E-28 164.9 10.7 149 36-211 4-152 (346)
38 KOG0117|consensus 99.9 1.3E-21 2.8E-26 164.6 20.3 221 78-325 37-269 (506)
39 KOG0146|consensus 99.9 1.8E-22 4E-27 158.8 12.0 178 128-305 17-368 (371)
40 KOG1190|consensus 99.9 1.3E-20 2.8E-25 156.8 23.3 262 33-301 149-490 (492)
41 KOG0110|consensus 99.9 1.3E-21 2.8E-26 173.6 14.8 174 34-209 515-693 (725)
42 KOG4211|consensus 99.9 1.2E-19 2.6E-24 155.0 23.5 267 30-301 6-357 (510)
43 KOG0120|consensus 99.8 1.8E-20 3.9E-25 164.1 14.5 265 31-301 172-491 (500)
44 KOG0124|consensus 99.8 2.7E-21 5.8E-26 158.7 8.6 174 130-305 113-293 (544)
45 KOG4206|consensus 99.8 2.1E-18 4.5E-23 133.8 18.6 207 32-300 7-220 (221)
46 KOG0146|consensus 99.8 1.4E-19 3E-24 142.7 12.1 178 33-210 18-366 (371)
47 KOG1456|consensus 99.8 6.1E-17 1.3E-21 133.6 27.3 264 31-302 117-491 (494)
48 KOG4205|consensus 99.8 3.7E-18 7.9E-23 142.8 12.4 174 33-213 5-180 (311)
49 KOG4205|consensus 99.8 3.2E-18 6.9E-23 143.2 10.8 173 129-310 5-184 (311)
50 PLN03134 glycine-rich RNA-bind 99.7 2.6E-17 5.6E-22 124.4 12.7 84 31-114 31-115 (144)
51 KOG0147|consensus 99.7 2.3E-18 4.9E-23 149.2 7.6 177 129-306 178-362 (549)
52 KOG1457|consensus 99.7 6.2E-17 1.3E-21 124.5 11.0 239 28-289 28-273 (284)
53 KOG0105|consensus 99.7 3.1E-16 6.8E-21 117.1 14.2 158 33-198 5-177 (241)
54 PLN03134 glycine-rich RNA-bind 99.7 7.6E-16 1.6E-20 116.4 12.9 82 224-305 30-117 (144)
55 KOG1548|consensus 99.7 2.9E-15 6.4E-20 122.7 16.5 179 128-306 132-356 (382)
56 PF00076 RRM_1: RNA recognitio 99.7 3E-16 6.5E-21 104.5 9.0 70 37-106 1-70 (70)
57 KOG0125|consensus 99.6 6.9E-16 1.5E-20 125.5 9.4 88 225-312 93-184 (376)
58 KOG1365|consensus 99.6 4E-15 8.6E-20 123.4 13.4 272 28-301 54-361 (508)
59 KOG0105|consensus 99.6 1.4E-14 3E-19 108.4 14.3 167 129-298 5-186 (241)
60 PF14259 RRM_6: RNA recognitio 99.6 2.3E-15 5E-20 100.1 9.1 70 37-106 1-70 (70)
61 KOG0122|consensus 99.6 2E-15 4.4E-20 118.0 9.8 80 32-111 187-267 (270)
62 KOG1548|consensus 99.6 4.7E-14 1E-18 115.8 17.6 176 31-209 131-352 (382)
63 KOG0106|consensus 99.6 3E-15 6.5E-20 117.7 8.0 157 35-205 2-167 (216)
64 KOG0114|consensus 99.6 1.3E-14 2.7E-19 98.0 9.6 86 23-110 7-92 (124)
65 KOG0121|consensus 99.6 8.4E-15 1.8E-19 102.8 7.2 80 31-110 33-113 (153)
66 KOG0125|consensus 99.6 2.2E-14 4.8E-19 116.8 10.3 79 33-112 95-173 (376)
67 PF00076 RRM_1: RNA recognitio 99.6 2.2E-14 4.8E-19 95.4 8.2 65 231-295 1-70 (70)
68 KOG4211|consensus 99.6 2.2E-13 4.8E-18 117.0 16.1 168 128-301 8-181 (510)
69 KOG0114|consensus 99.6 5.2E-14 1.1E-18 95.0 9.5 80 222-301 12-94 (124)
70 KOG0106|consensus 99.5 2.2E-14 4.7E-19 112.9 8.3 162 131-301 2-170 (216)
71 PLN03120 nucleic acid binding 99.5 4.7E-14 1E-18 114.0 10.1 75 34-111 4-78 (260)
72 KOG0107|consensus 99.5 2.9E-14 6.2E-19 105.9 7.8 78 34-115 10-87 (195)
73 PLN03120 nucleic acid binding 99.5 9.8E-14 2.1E-18 112.2 11.2 74 228-302 4-80 (260)
74 KOG0149|consensus 99.5 1E-13 2.2E-18 108.2 8.9 84 32-116 10-94 (247)
75 smart00362 RRM_2 RNA recogniti 99.5 2.2E-13 4.7E-18 90.9 9.4 72 36-108 1-72 (72)
76 COG0724 RNA-binding proteins ( 99.5 6.3E-13 1.4E-17 114.0 14.7 133 34-166 115-261 (306)
77 PF14259 RRM_6: RNA recognitio 99.5 2.5E-13 5.4E-18 90.2 8.5 65 231-295 1-70 (70)
78 KOG4207|consensus 99.5 8.9E-14 1.9E-18 106.0 6.4 84 31-114 10-94 (256)
79 KOG0126|consensus 99.5 6.6E-15 1.4E-19 109.8 -0.3 77 33-109 34-111 (219)
80 cd00590 RRM RRM (RNA recogniti 99.5 9E-13 1.9E-17 88.3 10.0 74 36-109 1-74 (74)
81 PF13893 RRM_5: RNA recognitio 99.5 5.5E-13 1.2E-17 84.1 8.3 55 245-299 1-56 (56)
82 KOG0120|consensus 99.5 6.1E-13 1.3E-17 117.2 11.4 181 29-209 284-492 (500)
83 PLN03121 nucleic acid binding 99.5 4.7E-13 1E-17 106.4 9.7 74 34-110 5-78 (243)
84 KOG0107|consensus 99.4 4.5E-13 9.7E-18 99.7 7.9 79 227-305 9-88 (195)
85 smart00360 RRM RNA recognition 99.4 7.6E-13 1.7E-17 87.9 8.4 70 39-108 1-71 (71)
86 KOG4660|consensus 99.4 3.8E-13 8.2E-18 117.4 8.4 78 25-106 66-143 (549)
87 KOG4212|consensus 99.4 9.5E-12 2.1E-16 105.4 16.4 173 128-300 42-292 (608)
88 KOG0121|consensus 99.4 4.9E-13 1.1E-17 94.0 6.9 75 227-301 35-115 (153)
89 KOG0130|consensus 99.4 5E-13 1.1E-17 94.8 7.0 82 32-113 70-152 (170)
90 KOG0113|consensus 99.4 8E-13 1.7E-17 106.5 8.9 79 32-110 99-178 (335)
91 KOG0122|consensus 99.4 8.9E-13 1.9E-17 103.4 8.9 78 225-302 186-269 (270)
92 KOG4207|consensus 99.4 6.7E-13 1.4E-17 101.3 8.0 79 227-305 12-96 (256)
93 PLN03213 repressor of silencin 99.4 1.1E-12 2.4E-17 112.7 9.7 77 225-301 7-87 (759)
94 PLN03213 repressor of silencin 99.4 9.4E-13 2E-17 113.1 9.1 75 33-110 9-85 (759)
95 KOG4307|consensus 99.4 4.7E-12 1E-16 112.9 13.2 174 32-207 309-512 (944)
96 PLN03121 nucleic acid binding 99.4 4.6E-12 1E-16 100.8 11.0 75 227-302 4-81 (243)
97 smart00362 RRM_2 RNA recogniti 99.4 3.8E-12 8.3E-17 84.7 9.0 68 230-297 1-72 (72)
98 PF13893 RRM_5: RNA recognitio 99.4 4.4E-12 9.6E-17 79.9 8.2 56 51-110 1-56 (56)
99 KOG0111|consensus 99.3 8.9E-13 1.9E-17 101.6 4.2 80 32-111 8-88 (298)
100 KOG0149|consensus 99.3 9.1E-12 2E-16 97.4 8.8 74 227-301 11-90 (247)
101 COG0724 RNA-binding proteins ( 99.3 7.1E-11 1.5E-15 101.2 15.3 134 130-263 115-260 (306)
102 KOG0111|consensus 99.3 2.3E-12 5.1E-17 99.3 4.6 81 227-307 9-95 (298)
103 KOG0108|consensus 99.3 1.1E-11 2.5E-16 108.7 8.3 80 35-114 19-99 (435)
104 KOG4206|consensus 99.3 1.7E-11 3.6E-16 95.7 8.0 78 228-305 9-93 (221)
105 smart00361 RRM_1 RNA recogniti 99.3 3.2E-11 6.8E-16 79.7 7.9 61 48-108 2-70 (70)
106 cd00590 RRM RRM (RNA recogniti 99.3 6E-11 1.3E-15 79.3 9.5 69 230-298 1-74 (74)
107 KOG0113|consensus 99.3 4.6E-11 1E-15 96.5 10.0 82 221-302 94-181 (335)
108 smart00360 RRM RNA recognition 99.2 4.2E-11 9.2E-16 79.3 7.6 65 233-297 1-71 (71)
109 KOG0129|consensus 99.2 4E-10 8.7E-15 98.0 15.3 163 25-190 250-432 (520)
110 KOG0130|consensus 99.2 5.1E-11 1.1E-15 84.8 6.6 80 224-303 68-153 (170)
111 KOG1365|consensus 99.2 1.7E-10 3.8E-15 96.3 9.8 174 34-208 161-361 (508)
112 KOG4208|consensus 99.1 2.3E-10 4.9E-15 87.9 8.0 79 32-110 47-127 (214)
113 KOG0128|consensus 99.1 3.8E-12 8.2E-17 116.3 -2.1 244 28-303 565-816 (881)
114 smart00361 RRM_1 RNA recogniti 99.1 2.9E-10 6.3E-15 75.0 7.3 56 242-297 2-70 (70)
115 KOG0132|consensus 99.1 2.6E-10 5.5E-15 103.4 9.1 83 224-306 417-499 (894)
116 KOG0126|consensus 99.1 1.2E-11 2.6E-16 92.6 0.5 75 227-301 34-114 (219)
117 KOG0108|consensus 99.1 1.7E-10 3.7E-15 101.4 7.6 77 229-305 19-101 (435)
118 KOG4454|consensus 99.1 2.1E-11 4.5E-16 94.1 0.9 149 31-200 6-154 (267)
119 KOG0415|consensus 99.1 2.5E-10 5.4E-15 94.4 6.7 85 27-111 232-317 (479)
120 KOG0112|consensus 99.1 1.8E-10 4E-15 106.0 6.2 163 128-305 370-534 (975)
121 KOG0129|consensus 99.1 7.3E-09 1.6E-13 90.3 15.3 153 127-283 256-432 (520)
122 KOG1457|consensus 99.0 6.1E-09 1.3E-13 80.9 10.7 82 224-305 30-121 (284)
123 KOG0153|consensus 99.0 4.9E-09 1.1E-13 86.8 10.0 79 224-302 224-303 (377)
124 KOG4661|consensus 99.0 2.1E-09 4.6E-14 94.4 8.2 79 227-305 404-488 (940)
125 KOG0132|consensus 99.0 1.7E-09 3.6E-14 98.3 7.7 78 29-111 416-493 (894)
126 KOG4307|consensus 99.0 9.2E-09 2E-13 92.4 12.0 165 133-299 314-511 (944)
127 KOG0112|consensus 98.9 1.2E-09 2.5E-14 100.9 5.4 166 28-211 366-533 (975)
128 KOG0415|consensus 98.9 3E-09 6.4E-14 88.2 7.1 81 221-301 232-318 (479)
129 KOG4661|consensus 98.9 7.3E-09 1.6E-13 91.0 9.2 80 31-110 402-482 (940)
130 PF04059 RRM_2: RNA recognitio 98.9 1.8E-08 4E-13 69.6 9.4 76 35-110 2-84 (97)
131 KOG0533|consensus 98.9 1.4E-08 3E-13 82.3 8.8 81 31-111 80-160 (243)
132 PF11608 Limkain-b1: Limkain b 98.8 3.2E-08 6.9E-13 64.8 8.1 68 35-111 3-75 (90)
133 KOG0128|consensus 98.8 5.7E-10 1.2E-14 102.4 -1.7 150 32-209 665-815 (881)
134 KOG4454|consensus 98.8 3.2E-09 7E-14 82.2 2.5 144 126-296 5-157 (267)
135 KOG4208|consensus 98.7 4.5E-08 9.7E-13 75.5 7.6 76 227-302 48-130 (214)
136 KOG4210|consensus 98.7 1.4E-08 3E-13 85.5 5.2 178 33-211 87-266 (285)
137 KOG0153|consensus 98.7 5.1E-08 1.1E-12 80.9 8.3 76 32-112 226-302 (377)
138 KOG0151|consensus 98.7 5.1E-08 1.1E-12 88.0 8.5 93 224-316 170-271 (877)
139 PF11608 Limkain-b1: Limkain b 98.7 1.5E-07 3.3E-12 61.7 8.0 71 229-303 3-78 (90)
140 KOG0226|consensus 98.6 4E-08 8.7E-13 78.0 4.8 164 133-303 99-271 (290)
141 KOG0533|consensus 98.6 1.8E-07 3.8E-12 75.9 8.4 78 226-303 81-163 (243)
142 KOG4660|consensus 98.6 3.7E-08 7.9E-13 86.8 4.7 73 223-295 70-143 (549)
143 KOG4210|consensus 98.6 8.7E-08 1.9E-12 80.7 5.5 174 129-305 87-267 (285)
144 KOG4676|consensus 98.6 3.4E-08 7.3E-13 83.1 2.7 198 36-290 9-214 (479)
145 KOG0116|consensus 98.5 2E-07 4.4E-12 81.8 7.3 79 31-110 285-364 (419)
146 KOG4209|consensus 98.5 1.7E-07 3.8E-12 76.2 5.9 82 28-110 95-177 (231)
147 PF04059 RRM_2: RNA recognitio 98.5 9.4E-07 2E-11 61.2 8.4 73 229-301 2-86 (97)
148 KOG0226|consensus 98.5 1.8E-07 4E-12 74.3 5.0 167 36-207 98-268 (290)
149 KOG2193|consensus 98.4 3E-08 6.5E-13 84.2 -0.6 155 131-305 2-160 (584)
150 PF08777 RRM_3: RNA binding mo 98.4 9.5E-07 2.1E-11 62.7 6.8 71 229-299 2-77 (105)
151 KOG0151|consensus 98.4 2E-06 4.4E-11 78.0 9.2 77 34-110 174-254 (877)
152 KOG0116|consensus 98.3 2.6E-06 5.7E-11 74.9 7.6 75 228-303 288-368 (419)
153 KOG2193|consensus 98.2 1.3E-07 2.7E-12 80.5 -1.9 154 35-209 2-157 (584)
154 COG5175 MOT2 Transcriptional r 98.2 7.7E-06 1.7E-10 67.9 7.6 88 23-110 103-200 (480)
155 KOG4209|consensus 98.2 8.6E-06 1.9E-10 66.4 7.8 78 224-302 97-180 (231)
156 COG5175 MOT2 Transcriptional r 98.1 1.1E-05 2.3E-10 67.1 6.8 76 229-304 115-205 (480)
157 PF08777 RRM_3: RNA binding mo 97.9 3.5E-05 7.6E-10 54.7 6.5 59 35-98 2-60 (105)
158 KOG3152|consensus 97.8 1.5E-05 3.2E-10 63.8 3.0 73 33-105 73-158 (278)
159 PF14605 Nup35_RRM_2: Nup53/35 97.8 7.9E-05 1.7E-09 45.6 5.1 52 35-92 2-53 (53)
160 KOG2416|consensus 97.7 3.6E-05 7.9E-10 68.8 4.7 102 7-113 417-522 (718)
161 PF08952 DUF1866: Domain of un 97.7 0.00031 6.7E-09 52.1 8.5 76 224-302 23-107 (146)
162 PF14605 Nup35_RRM_2: Nup53/35 97.7 0.00012 2.6E-09 44.8 5.3 52 229-281 2-53 (53)
163 KOG2202|consensus 97.7 2.2E-05 4.7E-10 63.1 2.4 60 243-302 83-148 (260)
164 KOG1995|consensus 97.7 6.3E-05 1.4E-09 63.4 4.7 84 31-114 63-155 (351)
165 PF05172 Nup35_RRM: Nup53/35/4 97.6 0.00023 5E-09 49.7 6.1 75 32-110 4-89 (100)
166 KOG1996|consensus 97.6 0.00018 3.9E-09 58.8 6.2 73 229-301 282-366 (378)
167 PF05172 Nup35_RRM: Nup53/35/4 97.6 0.00042 9E-09 48.5 7.3 71 228-300 6-90 (100)
168 KOG1855|consensus 97.6 0.00018 3.8E-09 62.0 6.2 65 224-288 227-310 (484)
169 KOG0115|consensus 97.5 0.00064 1.4E-08 54.8 8.4 88 88-193 7-94 (275)
170 KOG3152|consensus 97.5 6.5E-05 1.4E-09 60.2 2.6 67 227-293 73-157 (278)
171 PF08675 RNA_bind: RNA binding 97.5 0.0013 2.8E-08 43.5 7.8 57 227-286 8-64 (87)
172 KOG2416|consensus 97.4 0.00049 1.1E-08 61.8 6.9 78 224-301 440-521 (718)
173 KOG4849|consensus 97.4 0.00019 4.2E-09 60.1 4.0 78 31-108 77-157 (498)
174 PF08675 RNA_bind: RNA binding 97.4 0.0012 2.7E-08 43.6 6.8 59 31-97 6-64 (87)
175 KOG1995|consensus 97.3 0.00023 4.9E-09 60.2 4.1 81 225-305 63-157 (351)
176 KOG2314|consensus 97.3 0.00045 9.8E-09 61.7 5.8 77 32-108 56-139 (698)
177 KOG2202|consensus 97.2 0.00015 3.3E-09 58.3 2.0 61 50-110 84-145 (260)
178 KOG1855|consensus 97.1 0.00057 1.2E-08 59.0 4.3 82 27-108 224-319 (484)
179 KOG0115|consensus 97.0 0.0019 4E-08 52.2 6.1 98 184-301 7-113 (275)
180 KOG2314|consensus 97.0 0.003 6.6E-08 56.6 7.8 76 226-301 56-143 (698)
181 PF08952 DUF1866: Domain of un 97.0 0.0033 7.2E-08 46.7 6.8 53 50-110 52-104 (146)
182 PF04847 Calcipressin: Calcipr 97.0 0.0036 7.9E-08 49.2 7.2 62 241-302 8-71 (184)
183 PF10309 DUF2414: Protein of u 96.9 0.0082 1.8E-07 37.7 6.9 54 34-95 5-62 (62)
184 KOG4676|consensus 96.9 0.0023 4.9E-08 54.7 5.9 72 229-301 8-88 (479)
185 PF15023 DUF4523: Protein of u 96.9 0.0064 1.4E-07 44.6 7.3 75 224-300 82-160 (166)
186 PF10567 Nab6_mRNP_bdg: RNA-re 96.9 0.062 1.3E-06 44.6 13.7 185 23-207 4-230 (309)
187 KOG1996|consensus 96.8 0.0043 9.4E-08 51.0 6.6 63 48-110 300-364 (378)
188 PF07576 BRAP2: BRCA1-associat 96.7 0.027 5.9E-07 40.2 9.1 69 33-102 11-81 (110)
189 KOG2591|consensus 96.7 0.0048 1E-07 55.3 6.3 73 30-108 171-247 (684)
190 PF10309 DUF2414: Protein of u 96.6 0.02 4.3E-07 36.0 7.2 55 228-284 5-62 (62)
191 KOG0804|consensus 96.5 0.031 6.7E-07 49.1 9.9 68 34-102 74-142 (493)
192 PF11767 SET_assoc: Histone ly 96.5 0.017 3.6E-07 37.0 6.3 55 45-107 11-65 (66)
193 PF03467 Smg4_UPF3: Smg-4/UPF3 96.2 0.0052 1.1E-07 48.2 3.6 81 32-112 5-97 (176)
194 PF07576 BRAP2: BRCA1-associat 96.1 0.085 1.8E-06 37.7 8.8 64 228-291 13-81 (110)
195 KOG2068|consensus 96.1 0.002 4.3E-08 54.3 0.6 78 229-306 78-167 (327)
196 KOG4574|consensus 95.7 0.008 1.7E-07 56.6 3.1 70 239-308 309-380 (1007)
197 KOG4213|consensus 95.7 0.0077 1.7E-07 45.9 2.2 87 1-94 81-169 (205)
198 PF15023 DUF4523: Protein of u 95.6 0.042 9.1E-07 40.4 5.7 72 32-110 84-159 (166)
199 KOG4285|consensus 95.3 0.05 1.1E-06 45.2 5.9 65 34-105 197-261 (350)
200 KOG4849|consensus 95.3 0.018 3.9E-07 48.7 3.4 77 130-206 80-159 (498)
201 KOG2068|consensus 95.1 0.0095 2.1E-07 50.3 1.3 79 32-110 75-160 (327)
202 PF04847 Calcipressin: Calcipr 94.9 0.089 1.9E-06 41.5 6.1 60 47-111 8-69 (184)
203 KOG0804|consensus 94.9 0.11 2.3E-06 45.8 7.0 64 228-291 74-142 (493)
204 PF07292 NID: Nmi/IFP 35 domai 94.6 0.049 1.1E-06 37.0 3.4 73 78-152 1-74 (88)
205 PF11767 SET_assoc: Histone ly 94.3 0.38 8.2E-06 30.8 6.8 56 238-296 10-65 (66)
206 PF03467 Smg4_UPF3: Smg-4/UPF3 94.2 0.081 1.7E-06 41.6 4.4 76 227-302 6-98 (176)
207 KOG4285|consensus 94.0 0.25 5.5E-06 41.2 6.9 69 229-299 198-267 (350)
208 PF03880 DbpA: DbpA RNA bindin 93.8 0.12 2.5E-06 34.2 3.9 59 238-299 11-74 (74)
209 PF07292 NID: Nmi/IFP 35 domai 93.7 0.12 2.7E-06 35.1 4.0 73 174-250 1-74 (88)
210 KOG2135|consensus 92.9 0.14 2.9E-06 45.5 3.9 75 228-303 372-447 (526)
211 KOG2591|consensus 92.5 0.62 1.3E-05 42.4 7.6 71 227-298 174-248 (684)
212 KOG4019|consensus 92.1 0.32 6.9E-06 37.5 4.6 74 229-302 11-90 (193)
213 KOG2135|consensus 92.0 0.16 3.5E-06 45.1 3.3 76 30-111 368-444 (526)
214 KOG4574|consensus 91.2 0.17 3.8E-06 48.1 2.8 69 38-111 302-372 (1007)
215 PF10567 Nab6_mRNP_bdg: RNA-re 90.4 9.9 0.00021 32.1 16.5 163 125-287 10-214 (309)
216 PF03880 DbpA: DbpA RNA bindin 89.8 1.9 4.1E-05 28.4 6.2 57 45-109 12-73 (74)
217 KOG2253|consensus 88.0 0.54 1.2E-05 43.7 3.4 73 224-299 36-108 (668)
218 PRK14548 50S ribosomal protein 87.1 2.9 6.4E-05 28.2 5.7 57 37-95 23-81 (84)
219 KOG2318|consensus 85.5 3.8 8.1E-05 37.8 7.2 81 31-111 171-306 (650)
220 TIGR03636 L23_arch archaeal ri 83.0 6.4 0.00014 26.1 5.8 56 37-94 16-73 (77)
221 KOG2253|consensus 81.2 1 2.2E-05 42.0 2.1 70 32-109 38-107 (668)
222 KOG2318|consensus 79.1 15 0.00032 34.1 8.5 80 225-304 171-310 (650)
223 KOG2891|consensus 77.9 0.91 2E-05 37.5 0.6 79 224-302 145-268 (445)
224 KOG4410|consensus 76.7 3.3 7.2E-05 34.5 3.5 49 33-86 329-378 (396)
225 PF03468 XS: XS domain; Inter 75.1 3.8 8.1E-05 29.7 3.1 48 36-85 10-66 (116)
226 KOG4483|consensus 73.4 8.1 0.00018 34.0 5.1 56 32-93 389-445 (528)
227 KOG2295|consensus 64.7 1 2.2E-05 41.0 -1.9 75 29-103 226-301 (648)
228 PF07530 PRE_C2HC: Associated 64.2 11 0.00023 24.4 3.1 59 49-110 2-62 (68)
229 smart00596 PRE_C2HC PRE_C2HC d 60.6 13 0.00027 24.0 2.9 59 49-110 2-62 (69)
230 KOG4483|consensus 60.6 23 0.00049 31.3 5.3 56 227-283 390-446 (528)
231 PTZ00191 60S ribosomal protein 60.3 38 0.00083 25.5 5.8 56 37-94 84-141 (145)
232 PF14111 DUF4283: Domain of un 56.8 11 0.00024 28.6 2.7 119 37-165 18-140 (153)
233 KOG1295|consensus 55.1 17 0.00037 31.9 3.8 68 33-100 6-77 (376)
234 KOG4410|consensus 50.3 44 0.00095 28.2 5.2 49 228-276 330-379 (396)
235 KOG4019|consensus 50.0 13 0.00029 28.9 2.1 70 36-110 12-87 (193)
236 PRK10629 EnvZ/OmpR regulon mod 46.0 1.2E+02 0.0026 22.4 6.7 74 230-305 37-115 (127)
237 PF15513 DUF4651: Domain of un 44.7 65 0.0014 20.3 4.1 21 145-165 9-29 (62)
238 PF14111 DUF4283: Domain of un 43.8 35 0.00076 25.7 3.7 111 141-263 28-140 (153)
239 PF02714 DUF221: Domain of unk 43.5 35 0.00075 29.8 4.1 36 267-304 1-36 (325)
240 COG5193 LHP1 La protein, small 40.2 14 0.0003 32.7 1.0 61 33-93 173-244 (438)
241 PF03468 XS: XS domain; Inter 39.7 63 0.0014 23.4 4.2 47 230-277 10-69 (116)
242 PF11823 DUF3343: Protein of u 38.9 48 0.001 21.5 3.2 26 265-290 2-27 (73)
243 PF09902 DUF2129: Uncharacteri 37.1 1.1E+02 0.0024 19.9 4.6 39 53-99 15-53 (71)
244 PF02714 DUF221: Domain of unk 36.5 75 0.0016 27.7 5.1 31 78-110 1-31 (325)
245 PF03439 Spt5-NGN: Early trans 36.1 78 0.0017 21.3 4.0 34 254-287 33-67 (84)
246 COG5638 Uncharacterized conser 35.5 2.1E+02 0.0046 25.7 7.3 38 265-302 259-298 (622)
247 KOG3424|consensus 34.5 88 0.0019 22.6 4.0 47 44-91 33-85 (132)
248 PF00403 HMA: Heavy-metal-asso 33.2 1.2E+02 0.0025 18.6 6.2 54 230-283 1-58 (62)
249 PF11823 DUF3343: Protein of u 33.1 78 0.0017 20.5 3.5 27 76-102 2-28 (73)
250 COG0150 PurM Phosphoribosylami 32.8 17 0.00036 31.7 0.3 50 46-98 273-322 (345)
251 PF14893 PNMA: PNMA 31.4 38 0.00082 29.7 2.3 74 32-111 16-95 (331)
252 PRK01178 rps24e 30S ribosomal 30.5 1.7E+02 0.0037 20.5 5.0 46 45-91 30-81 (99)
253 PF10281 Ish1: Putative stress 29.7 46 0.001 18.4 1.7 17 45-61 3-19 (38)
254 PRK11901 hypothetical protein; 28.5 1.9E+02 0.0041 25.2 5.8 63 32-98 243-307 (327)
255 KOG4008|consensus 28.3 58 0.0013 26.7 2.6 36 226-261 38-73 (261)
256 PF12829 Mhr1: Transcriptional 28.0 1.8E+02 0.004 20.0 4.6 52 42-96 20-72 (91)
257 cd04889 ACT_PDH-BS-like C-term 28.0 1.4E+02 0.003 17.7 6.1 44 47-92 11-55 (56)
258 PF00276 Ribosomal_L23: Riboso 27.9 1.8E+02 0.0038 20.0 4.7 50 37-86 22-84 (91)
259 PRK05738 rplW 50S ribosomal pr 27.8 2.1E+02 0.0045 19.7 5.8 33 37-69 22-56 (92)
260 PRK10629 EnvZ/OmpR regulon mod 27.3 2.6E+02 0.0056 20.7 7.8 71 33-110 34-108 (127)
261 PHA01632 hypothetical protein 27.3 64 0.0014 19.6 2.0 21 37-57 19-39 (64)
262 cd04880 ACT_AAAH-PDT-like ACT 27.2 1.8E+02 0.0038 18.7 6.0 51 47-97 12-66 (75)
263 PRK08559 nusG transcription an 26.0 2E+02 0.0043 22.0 5.2 46 48-97 18-68 (153)
264 cd04904 ACT_AAAH ACT domain of 25.6 1.9E+02 0.0042 18.6 5.5 51 47-97 13-65 (74)
265 COG5638 Uncharacterized conser 25.4 1.7E+02 0.0036 26.3 5.0 80 31-110 143-295 (622)
266 KOG1295|consensus 24.5 1.1E+02 0.0023 27.2 3.8 61 229-289 8-77 (376)
267 PTZ00071 40S ribosomal protein 24.3 2.3E+02 0.0051 21.1 4.9 46 45-91 35-87 (132)
268 PRK06737 acetolactate synthase 23.7 2.3E+02 0.0049 18.8 6.7 61 36-98 6-67 (76)
269 KOG4008|consensus 23.2 74 0.0016 26.1 2.4 31 32-62 38-68 (261)
270 KOG2891|consensus 22.8 1.2E+02 0.0026 25.5 3.5 40 125-164 144-195 (445)
271 PF14893 PNMA: PNMA 21.7 1.7E+02 0.0037 25.8 4.5 48 227-274 17-72 (331)
272 KOG2295|consensus 21.6 19 0.00042 33.3 -1.2 68 227-294 230-303 (648)
273 PF08544 GHMP_kinases_C: GHMP 21.6 2.4E+02 0.0052 18.3 6.2 42 243-285 37-80 (85)
274 PF10915 DUF2709: Protein of u 21.2 1.7E+02 0.0037 23.2 3.9 30 80-110 47-76 (238)
275 cd04882 ACT_Bt0572_2 C-termina 20.9 2.1E+02 0.0045 17.3 5.9 47 47-94 12-59 (65)
276 KOG4365|consensus 20.9 17 0.00037 32.5 -1.7 71 230-301 5-81 (572)
277 KOG1635|consensus 20.4 4.3E+02 0.0094 20.7 6.9 89 7-99 49-139 (191)
278 PRK09631 DNA topoisomerase IV 20.3 7.5E+02 0.016 24.2 8.7 59 35-95 221-282 (635)
No 1
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=7.1e-46 Score=327.28 Aligned_cols=261 Identities=26% Similarity=0.447 Sum_probs=221.9
Q ss_pred ccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeec
Q psy8956 33 KENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVE 111 (333)
Q Consensus 33 ~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~-~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~~~ 111 (333)
+..+|||+|||+.+++++|+++|+.||+|.+|+++++. +|.++|||||+|.+.++|.+|++.|+|..+.|+.|.|.++.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 35789999999999999999999999999999999987 88999999999999999999999999999999999999883
Q ss_pred cCCCCCCCCCCCCcccCCCCeEEEeCCCCCCCHHHHHHHhhccCceEEEEEEeCC-CCCceeEEEEEeCCHHHHHHHHHH
Q psy8956 112 LKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIE 190 (333)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~~~~~v~f~~~~~a~~a~~~ 190 (333)
... ......+|||+|||..+++++|+++|+.||.|..+.+..+. ++.++|+|||+|.+.++|..|++.
T Consensus 82 ~~~-----------~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~ 150 (352)
T TIGR01661 82 PSS-----------DSIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKT 150 (352)
T ss_pred ccc-----------cccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHH
Confidence 221 12245689999999999999999999999999999988775 677899999999999999999999
Q ss_pred hCCceecc--ceeEEEeeeecCCCcc--------------CC--------------------------------------
Q psy8956 191 MNGRMIQH--NSTFVSLAEIVPGKKV--------------FP-------------------------------------- 216 (333)
Q Consensus 191 l~~~~~~~--~~i~v~~~~~~~~~~~--------------~~-------------------------------------- 216 (333)
|++..+.+ ..+.+.++........ ..
T Consensus 151 l~g~~~~g~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (352)
T TIGR01661 151 LNGTTPSGCTEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQ 230 (352)
T ss_pred hCCCccCCCceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhh
Confidence 99998877 4567776543321000 00
Q ss_pred ------------CCCC---------------CCCCCCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC------
Q psy8956 217 ------------KVKP---------------PLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------ 263 (333)
Q Consensus 217 ------------~~~~---------------~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~------ 263 (333)
...+ .......+.+|||+|||..+++++|+++|++||.|..++++.+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~s 310 (352)
T TIGR01661 231 QQHAVAQQHAAQRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQC 310 (352)
T ss_pred hhcccccccccccCCCccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCc
Confidence 0000 0000122347999999999999999999999999999999876
Q ss_pred CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEecCCCCC
Q psy8956 264 KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKPG 304 (333)
Q Consensus 264 ~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~a~~~~~ 304 (333)
+|||||+|.+.++|.+|++.|||..|+||.|+|.|+..+..
T Consensus 311 kG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~~~~ 351 (352)
T TIGR01661 311 KGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTNKAY 351 (352)
T ss_pred cceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccCCCC
Confidence 88999999999999999999999999999999999998764
No 2
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=3.2e-44 Score=334.16 Aligned_cols=286 Identities=32% Similarity=0.539 Sum_probs=243.5
Q ss_pred CCCCceeeccCCCCCCCCccccCcCCcCcccccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEE
Q psy8956 2 KSKGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIV 81 (333)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~ 81 (333)
.|+|+.|+|.|+.+ ++..+.... .+|||+|||+++++++|+++|+.||.|.++++..+.+|.++|||||+
T Consensus 66 ~i~gk~i~i~~s~~---~~~~~~~~~-------~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~ 135 (562)
T TIGR01628 66 RLGGKPIRIMWSQR---DPSLRRSGV-------GNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVH 135 (562)
T ss_pred EECCeeEEeecccc---cccccccCC-------CceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEE
Confidence 37899999999987 565554433 35999999999999999999999999999999999989999999999
Q ss_pred eCCHHHHHHHHHHhcCCccCCeeeEEeeeccCCCCCCCCCCCCcccCCCCeEEEeCCCCCCCHHHHHHHhhccCceEEEE
Q psy8956 82 FNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVK 161 (333)
Q Consensus 82 f~~~e~A~~al~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~ 161 (333)
|.+.++|.+|++.|+|..+.|+.+.|.......... ........+|||+||+..+++++|+++|+.||.|.++.
T Consensus 136 F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~~~~~~~------~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~ 209 (562)
T TIGR01628 136 FEKEESAKAAIQKVNGMLLNDKEVYVGRFIKKHERE------AAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAA 209 (562)
T ss_pred ECCHHHHHHHHHHhcccEecCceEEEeccccccccc------cccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEE
Confidence 999999999999999999999999997442221111 11234457899999999999999999999999999999
Q ss_pred EEeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceec----cceeEEEeeeecCCCccC-----CCCCCCCCCCCccceEE
Q psy8956 162 IVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQ----HNSTFVSLAEIVPGKKVF-----PKVKPPLLQPARKNKIF 232 (333)
Q Consensus 162 ~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~~----~~~i~v~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~ 232 (333)
+..+.++.++|+|||+|.+.++|.+|++.+++..+. +..+.+............ ..............+||
T Consensus 210 i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~ 289 (562)
T TIGR01628 210 VMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVGRAQKRAEREAELRRKFEELQQERKMKAQGVNLY 289 (562)
T ss_pred EEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEeecccChhhhHHHHHhhHHhhhhhhhcccCCCEEE
Confidence 999988899999999999999999999999999999 999988877554432110 00111112234567899
Q ss_pred EecCCCCCCHHHHHHHhhccCCeeEEEeecC-----CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEecCCCC
Q psy8956 233 VANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKP 303 (333)
Q Consensus 233 v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~-----~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~a~~~~ 303 (333)
|+||+..+++++|+++|++||.|.+++++.+ +|+|||+|.+.++|.+|+..|||..++|++|.|.+|..+.
T Consensus 290 V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k~ 365 (562)
T TIGR01628 290 VKNLDDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQRKE 365 (562)
T ss_pred EeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccCcH
Confidence 9999999999999999999999999999876 7899999999999999999999999999999999998764
No 3
>KOG0117|consensus
Probab=100.00 E-value=2.2e-42 Score=288.47 Aligned_cols=252 Identities=23% Similarity=0.345 Sum_probs=221.8
Q ss_pred ccccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCcc-CCeeeEEe
Q psy8956 31 VYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLI-GSKPVIIT 108 (333)
Q Consensus 31 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~-~~~~~g~a~v~f~~~e~A~~al~~l~~~~~-~g~~i~v~ 108 (333)
+...+.|||+.||.++.|++|.-+|++.|+|-++++++++ +|.++|||||+|.+.++|++|++.||+..| .|+.|.|.
T Consensus 80 p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc 159 (506)
T KOG0117|consen 80 PPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVC 159 (506)
T ss_pred CCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEE
Confidence 3556889999999999999999999999999999999997 999999999999999999999999999986 67999988
Q ss_pred eeccCCCCCCCCCCCCcccCCCCeEEEeCCCCCCCHHHHHHHhhccCc-eEEEEEEeCC--CCCceeEEEEEeCCHHHHH
Q psy8956 109 FVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN-IIEVKIVRDE--NGKSKGFGFIQFFSYKAAE 185 (333)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~-v~~~~~~~~~--~~~~~~~~~v~f~~~~~a~ 185 (333)
.+ ...+.|||+|||.+++.++|.+.+++.++ |..+.+...+ ..+.+|||||+|.+...|.
T Consensus 160 ~S-----------------van~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa 222 (506)
T KOG0117|consen 160 VS-----------------VANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAA 222 (506)
T ss_pred Ee-----------------eecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHH
Confidence 76 35778999999999999999999999875 6666666655 5678999999999999999
Q ss_pred HHHHHhCC--ceeccceeEEEeeeecCCCccCCCCCCCCCCCCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC
Q psy8956 186 KAIIEMNG--RMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD 263 (333)
Q Consensus 186 ~a~~~l~~--~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~ 263 (333)
.|.+.|-. ..+.|+.+.|.|+.+...-. ......-..|||.||+..+|++.|+++|++||.|++|+.++|
T Consensus 223 ~aRrKl~~g~~klwgn~~tVdWAep~~e~d--------ed~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD 294 (506)
T KOG0117|consen 223 MARRKLMPGKIKLWGNAITVDWAEPEEEPD--------EDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD 294 (506)
T ss_pred HHHhhccCCceeecCCcceeeccCcccCCC--------hhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc
Confidence 99988643 45899999999997765522 222334468999999999999999999999999999998855
Q ss_pred CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEecCCCCCCCCCC
Q psy8956 264 KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKPGVSITN 309 (333)
Q Consensus 264 ~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~a~~~~~~~~~~ 309 (333)
||||.|.+.++|.+||+.+||..|+|..|.|.+||+........
T Consensus 295 --YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~k~k~~r 338 (506)
T KOG0117|consen 295 --YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPVDKKKKER 338 (506)
T ss_pred --eeEEeecchHHHHHHHHHhcCceecCceEEEEecCChhhhccch
Confidence 99999999999999999999999999999999999866655543
No 4
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=2.6e-41 Score=314.69 Aligned_cols=253 Identities=33% Similarity=0.568 Sum_probs=224.5
Q ss_pred eEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeeccCC
Q psy8956 36 ELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKP 114 (333)
Q Consensus 36 ~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~-~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~~~~~~ 114 (333)
+|||+|||+++|+++|+++|++||.|.+|+|+++. +++++|||||+|.+.++|.+|++.+++..+.|+.|.|.|+...+
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 59999999999999999999999999999999998 79999999999999999999999999999999999999874332
Q ss_pred CCCCCCCCCCcccCCCCeEEEeCCCCCCCHHHHHHHhhccCceEEEEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhCCc
Q psy8956 115 GQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGR 194 (333)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~~~ 194 (333)
.. ......+|||+||+.++++++|+++|+.||.|.+|.+..+.+|+++|+|||+|.+.++|.+|++.+++.
T Consensus 82 ~~---------~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~ 152 (562)
T TIGR01628 82 SL---------RRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGM 152 (562)
T ss_pred cc---------cccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhccc
Confidence 21 122345799999999999999999999999999999999888889999999999999999999999999
Q ss_pred eeccceeEEEeeeecCCCccCCCCCCCCCCCCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC-----CcEEEE
Q psy8956 195 MIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFI 269 (333)
Q Consensus 195 ~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~-----~~~~fV 269 (333)
.+.++.+.+.......... .......++|||+|||..+++++|+++|++||.|..+.+..+ +|+|||
T Consensus 153 ~~~~~~i~v~~~~~~~~~~--------~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV 224 (562)
T TIGR01628 153 LLNDKEVYVGRFIKKHERE--------AAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFV 224 (562)
T ss_pred EecCceEEEeccccccccc--------cccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEE
Confidence 9999999987654333221 112234578999999999999999999999999999998876 779999
Q ss_pred EECCHHHHHHHHHHhCCCeeC----CeeEEEEecCCCCCC
Q psy8956 270 EFIMPKHATHAVSTMNGHVFK----SKPLKVTLSGTKPGV 305 (333)
Q Consensus 270 ~f~~~~~A~~a~~~l~g~~l~----g~~l~v~~a~~~~~~ 305 (333)
+|.+.++|.+|++.|+|..+. |+.|.|.++..+..+
T Consensus 225 ~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~~a~~k~er 264 (562)
T TIGR01628 225 NFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVGRAQKRAER 264 (562)
T ss_pred EECCHHHHHHHHHHhCCcEecccccceeeEeecccChhhh
Confidence 999999999999999999999 999999998776544
No 5
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=100.00 E-value=4.8e-41 Score=302.54 Aligned_cols=248 Identities=21% Similarity=0.322 Sum_probs=211.9
Q ss_pred cccccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccC-CeeeEEe
Q psy8956 30 KVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIG-SKPVIIT 108 (333)
Q Consensus 30 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~-g~~i~v~ 108 (333)
.+...++|||+|||+++++++|+++|++||.|.+++|+++.++.++|||||+|.+.++|++||+.|++..+. |+.+.|.
T Consensus 54 ~p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~ 133 (578)
T TIGR01648 54 QPGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVC 133 (578)
T ss_pred CCCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccc
Confidence 345568999999999999999999999999999999999999999999999999999999999999999875 6777665
Q ss_pred eeccCCCCCCCCCCCCcccCCCCeEEEeCCCCCCCHHHHHHHhhccCc-eEEEEEEeCC--CCCceeEEEEEeCCHHHHH
Q psy8956 109 FVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN-IIEVKIVRDE--NGKSKGFGFIQFFSYKAAE 185 (333)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~-v~~~~~~~~~--~~~~~~~~~v~f~~~~~a~ 185 (333)
.+ ...++|||+|||..+++++|.+.|+.++. +..+.+.... .+++++||||+|.+.++|.
T Consensus 134 ~S-----------------~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa 196 (578)
T TIGR01648 134 IS-----------------VDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAA 196 (578)
T ss_pred cc-----------------ccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHH
Confidence 44 13578999999999999999999999863 4444443332 4567899999999999999
Q ss_pred HHHHHhCC--ceeccceeEEEeeeecCCCccCCCCCCCCCCCCccceEEEecCCCCCCHHHHHHHhhcc--CCeeEEEee
Q psy8956 186 KAIIEMNG--RMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARF--GTITSSSLV 261 (333)
Q Consensus 186 ~a~~~l~~--~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~--g~v~~v~i~ 261 (333)
.|++.+.. ..+.++.|.|.++....... .......++|||+||+..+++++|+++|++| |.|++|.++
T Consensus 197 ~AirkL~~gki~l~Gr~I~VdwA~p~~~~d--------~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~ 268 (578)
T TIGR01648 197 MARRKLMPGRIQLWGHVIAVDWAEPEEEVD--------EDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI 268 (578)
T ss_pred HHHHHhhccceEecCceEEEEeeccccccc--------ccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee
Confidence 99998864 35789999999986543321 1122345789999999999999999999999 999999877
Q ss_pred cCCcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEecCCCCC
Q psy8956 262 SDKHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKPG 304 (333)
Q Consensus 262 ~~~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~a~~~~~ 304 (333)
+++|||+|.+.++|.+|++.|||..|+|+.|+|.||+++..
T Consensus 269 --rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~~~ 309 (578)
T TIGR01648 269 --RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKPVDK 309 (578)
T ss_pred --cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccCCCc
Confidence 56999999999999999999999999999999999987543
No 6
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=4.2e-40 Score=299.03 Aligned_cols=263 Identities=20% Similarity=0.273 Sum_probs=211.3
Q ss_pred ccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHh--cCCccCCeeeEEeee
Q psy8956 33 KENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEM--NGHLIGSKPVIITFV 110 (333)
Q Consensus 33 ~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l--~~~~~~g~~i~v~~~ 110 (333)
+++.|||+|||+.+++++|+++|+.||.|.++.+++ ++|+|||+|.+.++|.+|++.+ ++..+.|+.|.|.++
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~-----~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s 75 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLP-----GKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYS 75 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEC-----CCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEec
Confidence 357899999999999999999999999999999886 3789999999999999999874 678899999999998
Q ss_pred ccCCCCCCCCCC-CCcccCCCCeEEEeCCCCCCCHHHHHHHhhccCceEEEEEEeCCCCCceeEEEEEeCCHHHHHHHHH
Q psy8956 111 ELKPGQRSKPVG-PEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAII 189 (333)
Q Consensus 111 ~~~~~~~~~~~~-~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~ 189 (333)
......+..... ..........|+|.||+..+++++|+++|+.||.|.++.+.++. ..++|||+|.+.++|.+|++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~---~~~~afVef~~~~~A~~A~~ 152 (481)
T TIGR01649 76 TSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKN---NVFQALVEFESVNSAQHAKA 152 (481)
T ss_pred CCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecC---CceEEEEEECCHHHHHHHHH
Confidence 543322221100 01111223478999999999999999999999999999988753 24689999999999999999
Q ss_pred HhCCceecc--ceeEEEeeeecCCC------c----cCCCC---------------CC----------------------
Q psy8956 190 EMNGRMIQH--NSTFVSLAEIVPGK------K----VFPKV---------------KP---------------------- 220 (333)
Q Consensus 190 ~l~~~~~~~--~~i~v~~~~~~~~~------~----~~~~~---------------~~---------------------- 220 (333)
.|+|..+.+ +.+.|.++....-. . ..+.. ..
T Consensus 153 ~Lng~~i~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 232 (481)
T TIGR01649 153 ALNGADIYNGCCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPL 232 (481)
T ss_pred HhcCCcccCCceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCC
Confidence 999999865 46777776532110 0 00000 00
Q ss_pred -----------------------------------CCCCCCccceEEEecCCC-CCCHHHHHHHhhccCCeeEEEeecC-
Q psy8956 221 -----------------------------------PLLQPARKNKIFVANLPS-NINNSEFEELFARFGTITSSSLVSD- 263 (333)
Q Consensus 221 -----------------------------------~~~~~~~~~~l~v~nl~~-~~~~~~l~~~f~~~g~v~~v~i~~~- 263 (333)
......++++|||+||+. .+++++|+++|++||.|..|+++.+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~ 312 (481)
T TIGR01649 233 APLAGGDRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK 312 (481)
T ss_pred CcccccccCCCcccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC
Confidence 000123567999999997 6999999999999999999999877
Q ss_pred CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEecCCCC
Q psy8956 264 KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKP 303 (333)
Q Consensus 264 ~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~a~~~~ 303 (333)
+++|||+|.+.++|.+|+..|||..|+|++|+|.+++.+.
T Consensus 313 ~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~~ 352 (481)
T TIGR01649 313 KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQN 352 (481)
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccccc
Confidence 7899999999999999999999999999999999997653
No 7
>KOG0145|consensus
Probab=100.00 E-value=8.3e-41 Score=260.47 Aligned_cols=262 Identities=28% Similarity=0.461 Sum_probs=227.7
Q ss_pred ccccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEee
Q psy8956 31 VYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITF 109 (333)
Q Consensus 31 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~-~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~ 109 (333)
.+....|.|.-||..+|+++|+.+|...|+|+++++++|+ +|.+.||+||-|.+++||.+|++.|||..+..++|+|.|
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 4556678899999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred eccCCCCCCCCCCCCcccCCCCeEEEeCCCCCCCHHHHHHHhhccCceEEEEEEeCC-CCCceeEEEEEeCCHHHHHHHH
Q psy8956 110 VELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAI 188 (333)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~~~~~v~f~~~~~a~~a~ 188 (333)
+. +.........|||.+||..+++.++..+|++||.|...+++.+. +|.++|.+||.|....+|.+|+
T Consensus 118 AR-----------PSs~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AI 186 (360)
T KOG0145|consen 118 AR-----------PSSDSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAI 186 (360)
T ss_pred cc-----------CChhhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHH
Confidence 93 34445567889999999999999999999999999888887776 7899999999999999999999
Q ss_pred HHhCCceecc--ceeEEEeeeecCCCccC----------------C---------------------CCCC---------
Q psy8956 189 IEMNGRMIQH--NSTFVSLAEIVPGKKVF----------------P---------------------KVKP--------- 220 (333)
Q Consensus 189 ~~l~~~~~~~--~~i~v~~~~~~~~~~~~----------------~---------------------~~~~--------- 220 (333)
+.|+|....| .+|.|+++......... + ..++
T Consensus 187 k~lNG~~P~g~tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l 266 (360)
T KOG0145|consen 187 KGLNGQKPSGCTEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGL 266 (360)
T ss_pred HhccCCCCCCCCCCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCcccccccee
Confidence 9999988776 45899888655431000 0 0000
Q ss_pred ----CCCCCCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC------CcEEEEEECCHHHHHHHHHHhCCCeeC
Q psy8956 221 ----PLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFK 290 (333)
Q Consensus 221 ----~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~------~~~~fV~f~~~~~A~~a~~~l~g~~l~ 290 (333)
.......+-+|||.||.++.++.-|+++|++||.|..|++++| +||+||.+.+-++|..|+..|||..++
T Consensus 267 ~~~~lp~~~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg 346 (360)
T KOG0145|consen 267 AGVNLPGGPGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLG 346 (360)
T ss_pred eeeccCCCCCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCcccc
Confidence 0001112468999999999999999999999999999999998 899999999999999999999999999
Q ss_pred CeeEEEEecCCCC
Q psy8956 291 SKPLKVTLSGTKP 303 (333)
Q Consensus 291 g~~l~v~~a~~~~ 303 (333)
+|.|.|+|...+.
T Consensus 347 ~rvLQVsFKtnk~ 359 (360)
T KOG0145|consen 347 DRVLQVSFKTNKA 359 (360)
T ss_pred ceEEEEEEecCCC
Confidence 9999999988764
No 8
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=3e-39 Score=293.47 Aligned_cols=291 Identities=19% Similarity=0.254 Sum_probs=226.7
Q ss_pred CCCCceeeccCCCCCCCCccccCcC---CcCcccccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCCCCCcccEE
Q psy8956 2 KSKGKILEASWDEGISDDEGARSNK---ENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFA 78 (333)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a 78 (333)
.|.|+.|++.||.... ..+..+ ..........|+|+||++.+|+++|+++|+.||.|.+|.+.++.. .++|
T Consensus 64 ~l~g~~l~v~~s~~~~---~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~---~~~a 137 (481)
T TIGR01649 64 YIRGQPAFFNYSTSQE---IKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNN---VFQA 137 (481)
T ss_pred eEcCeEEEEEecCCcc---cccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCC---ceEE
Confidence 5889999999996521 111111 111223445799999999999999999999999999999887642 4689
Q ss_pred EEEeCCHHHHHHHHHHhcCCccCC--eeeEEeeeccCCCC------CC----CC---------C-------CC-------
Q psy8956 79 IIVFNTPAEAKKARVEMNGHLIGS--KPVIITFVELKPGQ------RS----KP---------V-------GP------- 123 (333)
Q Consensus 79 ~v~f~~~e~A~~al~~l~~~~~~g--~~i~v~~~~~~~~~------~~----~~---------~-------~~------- 123 (333)
||+|.+.++|.+|++.|||..+.+ ..++|.|+...... .. .+ . ..
T Consensus 138 fVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 217 (481)
T TIGR01649 138 LVEFESVNSAQHAKAALNGADIYNGCCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHP 217 (481)
T ss_pred EEEECCHHHHHHHHHHhcCCcccCCceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCC
Confidence 999999999999999999999865 57888877532210 00 00 0 00
Q ss_pred ---------------------------------------------------CcccCCCCeEEEeCCCC-CCCHHHHHHHh
Q psy8956 124 ---------------------------------------------------EEKQYKKDKVFVKNLVE-TVDEEELKSHF 151 (333)
Q Consensus 124 ---------------------------------------------------~~~~~~~~~l~v~~l~~-~~~~~~l~~~f 151 (333)
.....+..+|+|+||+. .+++++|+++|
T Consensus 218 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF 297 (481)
T TIGR01649 218 SSYGHDGYSSHGGPLAPLAGGDRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLF 297 (481)
T ss_pred ccCCCcccccCCCCCCcccccccCCCcccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHH
Confidence 00012456899999998 69999999999
Q ss_pred hccCceEEEEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeccceeEEEeeeecCCCccCC----------C---C
Q psy8956 152 IKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFP----------K---V 218 (333)
Q Consensus 152 ~~~g~v~~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~~~~~~----------~---~ 218 (333)
+.||.|.++.++.+. +|+|||+|.+.++|..|+..|++..+.|+.+.|.++.......... . .
T Consensus 298 ~~yG~V~~vki~~~~----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~d~~~ 373 (481)
T TIGR01649 298 CVYGNVERVKFMKNK----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQNVQPPREGQLDDGLTSYKDYSS 373 (481)
T ss_pred HhcCCeEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcccccccCCCCCcCcCCCcccccccC
Confidence 999999999998863 6899999999999999999999999999999999875432110000 0 0
Q ss_pred ------C-----CCCCCCCccceEEEecCCCCCCHHHHHHHhhccCC--eeEEEeecC----CcEEEEEECCHHHHHHHH
Q psy8956 219 ------K-----PPLLQPARKNKIFVANLPSNINNSEFEELFARFGT--ITSSSLVSD----KHIGFIEFIMPKHATHAV 281 (333)
Q Consensus 219 ------~-----~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~--v~~v~i~~~----~~~~fV~f~~~~~A~~a~ 281 (333)
. ......+++.+|+|+|||..+++++|+++|+.||. |..+++... +++|||+|.+.++|.+|+
T Consensus 374 ~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~~~~~~~~~gfVeF~~~e~A~~Al 453 (481)
T TIGR01649 374 SRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKFFPKDNERSKMGLLEWESVEDAVEAL 453 (481)
T ss_pred CccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEEecCCCCcceeEEEEcCCHHHHHHHH
Confidence 0 00011246789999999999999999999999998 888888655 589999999999999999
Q ss_pred HHhCCCeeCCee------EEEEecCCC
Q psy8956 282 STMNGHVFKSKP------LKVTLSGTK 302 (333)
Q Consensus 282 ~~l~g~~l~g~~------l~v~~a~~~ 302 (333)
..|||+.|+|+. |+|+||+++
T Consensus 454 ~~ln~~~l~~~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 454 IALNHHQLNEPNGSAPYHLKVSFSTSR 480 (481)
T ss_pred HHhcCCccCCCCCCccceEEEEeccCC
Confidence 999999999985 999999864
No 9
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=100.00 E-value=3.6e-38 Score=287.41 Aligned_cols=272 Identities=23% Similarity=0.333 Sum_probs=220.9
Q ss_pred ccccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEee
Q psy8956 31 VYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITF 109 (333)
Q Consensus 31 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~-~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~ 109 (333)
....++|||+|||..+++++|+++|+.||.|.+|.++++. ++.++|||||+|.+.++|.+|+. |+|..+.|+.|.|.+
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQS 164 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEee
Confidence 3457899999999999999999999999999999999998 88999999999999999999995 899999999999987
Q ss_pred eccCCCCCCCCC-CCCcccCCCCeEEEeCCCCCCCHHHHHHHhhccCceEEEEEEeCC-CCCceeEEEEEeCCHHHHHHH
Q psy8956 110 VELKPGQRSKPV-GPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKA 187 (333)
Q Consensus 110 ~~~~~~~~~~~~-~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~~~~~v~f~~~~~a~~a 187 (333)
+........... ..........+|||+|||..+++++|.++|+.||.|..+.+..+. +|.++|+|||+|.+.++|..|
T Consensus 165 ~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A 244 (457)
T TIGR01622 165 SQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEA 244 (457)
T ss_pred cchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHH
Confidence 633222111100 011112236899999999999999999999999999999999876 568899999999999999999
Q ss_pred HHHhCCceeccceeEEEeeeecCCCcc---------------------------------C-------CCC---------
Q psy8956 188 IIEMNGRMIQHNSTFVSLAEIVPGKKV---------------------------------F-------PKV--------- 218 (333)
Q Consensus 188 ~~~l~~~~~~~~~i~v~~~~~~~~~~~---------------------------------~-------~~~--------- 218 (333)
+..|+|..+.|+.|.|.++........ . +..
T Consensus 245 ~~~l~g~~i~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (457)
T TIGR01622 245 LEVMNGFELAGRPIKVGYAQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQK 324 (457)
T ss_pred HHhcCCcEECCEEEEEEEccCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhcc
Confidence 999999999999999999542211000 0 000
Q ss_pred ----------------------------CCCCCCCCccceEEEecCCCCCC----------HHHHHHHhhccCCeeEEEe
Q psy8956 219 ----------------------------KPPLLQPARKNKIFVANLPSNIN----------NSEFEELFARFGTITSSSL 260 (333)
Q Consensus 219 ----------------------------~~~~~~~~~~~~l~v~nl~~~~~----------~~~l~~~f~~~g~v~~v~i 260 (333)
.........+.+|+|.||....+ .+||++.|++||.|..|.+
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v 404 (457)
T TIGR01622 325 LQRDGIIDPNIPSRYATGALAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYV 404 (457)
T ss_pred ccccccccccccccccccccccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEE
Confidence 00000224568899999954433 3689999999999999988
Q ss_pred ecC--CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEecCCCC
Q psy8956 261 VSD--KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKP 303 (333)
Q Consensus 261 ~~~--~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~a~~~~ 303 (333)
... .|++||+|.+.++|.+|++.|||+.|+|+.|.+.|.....
T Consensus 405 ~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~f~gr~i~~~~~~~~~ 449 (457)
T TIGR01622 405 DTKNSAGKIYLKFSSVDAALAAFQALNGRYFGGKMITAAFVVNDV 449 (457)
T ss_pred eCCCCceeEEEEECCHHHHHHHHHHhcCcccCCeEEEEEEEcHHH
Confidence 733 8899999999999999999999999999999999987653
No 10
>KOG0144|consensus
Probab=100.00 E-value=4.8e-39 Score=267.40 Aligned_cols=266 Identities=25% Similarity=0.442 Sum_probs=227.5
Q ss_pred CcccccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCc-cCC--ee
Q psy8956 29 NKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHL-IGS--KP 104 (333)
Q Consensus 29 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~-~~~~~g~a~v~f~~~e~A~~al~~l~~~~-~~g--~~ 104 (333)
++..+.-++||+.||..|+|.||+++|++||.|.+|.+++|+ ++.++|+|||.|.+.++|.+|+..|++.. +.| ..
T Consensus 29 ~~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~p 108 (510)
T KOG0144|consen 29 NPDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHP 108 (510)
T ss_pred CCCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcc
Confidence 334666789999999999999999999999999999999999 99999999999999999999999999885 666 67
Q ss_pred eEEeeeccCCCCCCCCCCCCcccCCCCeEEEeCCCCCCCHHHHHHHhhccCceEEEEEEeCCCCCceeEEEEEeCCHHHH
Q psy8956 105 VIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAA 184 (333)
Q Consensus 105 i~v~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~v~f~~~~~a 184 (333)
+.|+|++... .....+++|||+.|+..+++.+++++|++||.|++|.++++..+.++|+|||.|.+.+.|
T Consensus 109 vqvk~Ad~E~----------er~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A 178 (510)
T KOG0144|consen 109 VQVKYADGER----------ERIVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMA 178 (510)
T ss_pred eeecccchhh----------hccccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHH
Confidence 7787773111 112457899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCce-ecc--ceeEEEeeeecCCC-------------------------------------------------
Q psy8956 185 EKAIIEMNGRM-IQH--NSTFVSLAEIVPGK------------------------------------------------- 212 (333)
Q Consensus 185 ~~a~~~l~~~~-~~~--~~i~v~~~~~~~~~------------------------------------------------- 212 (333)
..|++.+|+.. +.| .++.|+|++....+
T Consensus 179 ~~Aika~ng~~tmeGcs~PLVVkFADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g 258 (510)
T KOG0144|consen 179 VAAIKALNGTQTMEGCSQPLVVKFADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVG 258 (510)
T ss_pred HHHHHhhccceeeccCCCceEEEecccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCc
Confidence 99999999976 555 45899998876550
Q ss_pred --------------------------------------------------------------------------------
Q psy8956 213 -------------------------------------------------------------------------------- 212 (333)
Q Consensus 213 -------------------------------------------------------------------------------- 212 (333)
T Consensus 259 ~l~g~~~L~~l~a~~~qq~~~~~~~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~ 338 (510)
T KOG0144|consen 259 TLGGLPPLGPLNATQLQQAAALAAAATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTF 338 (510)
T ss_pred ccccccCCCCcchhHHHHHHHhhhhcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcC
Confidence
Q ss_pred ----------------------------------------------------------------------ccCCCCCCCC
Q psy8956 213 ----------------------------------------------------------------------KVFPKVKPPL 222 (333)
Q Consensus 213 ----------------------------------------------------------------------~~~~~~~~~~ 222 (333)
.......+..
T Consensus 339 p~t~~~~n~~~~~a~a~~~sp~aa~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q 418 (510)
T KOG0144|consen 339 PGTPANYNLAGGMAGAGTTSPVAASLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQ 418 (510)
T ss_pred CCCchhcccccccccccccCcccccccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCcc
Confidence 0000001111
Q ss_pred CCCCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC------CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEE
Q psy8956 223 LQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296 (333)
Q Consensus 223 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~------~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v 296 (333)
...+.+..|||.++|..+-+.+|-..|..||.|...++..+ +.|+||.|++..+|..||..|||+.+++++|+|
T Consensus 419 ~eGpeGanlfiyhlPqefgdq~l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkV 498 (510)
T KOG0144|consen 419 VEGPEGANLFIYHLPQEFGDQDLIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKV 498 (510)
T ss_pred ccCCCccceeeeeCchhhhhHHHHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceE
Confidence 23445678999999999999999999999999999887766 779999999999999999999999999999999
Q ss_pred EecCCCCC
Q psy8956 297 TLSGTKPG 304 (333)
Q Consensus 297 ~~a~~~~~ 304 (333)
.+...+.+
T Consensus 499 Qlk~~~~n 506 (510)
T KOG0144|consen 499 QLKRDRNN 506 (510)
T ss_pred EeeeccCC
Confidence 99887654
No 11
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=2.6e-37 Score=278.67 Aligned_cols=176 Identities=20% Similarity=0.379 Sum_probs=152.4
Q ss_pred ccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeec
Q psy8956 33 KENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVE 111 (333)
Q Consensus 33 ~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~-~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~~~ 111 (333)
..++|||+|||+.+++++|+++|..||.|.++++.++. ++.++|||||+|.+.++|.+|++.|||..+.|+.|.|....
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence 45789999999999999999999999999999999998 89999999999999999999999999999999999998543
Q ss_pred cCCCCCCCCCCCCcccCCCCeEEEeCCCCCCCHHHHHHHhhccCceEEEEEEeCC-CCCceeEEEEEeCCHHHHHHHHHH
Q psy8956 112 LKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIE 190 (333)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~~~~~v~f~~~~~a~~a~~~ 190 (333)
..+.................+|||+||+..+++++|+++|+.||.|.++.+.+++ ++.++|||||+|.+.++|.+|+..
T Consensus 186 ~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~a 265 (612)
T TIGR01645 186 NMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIAS 265 (612)
T ss_pred cccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHH
Confidence 2221111000111122345789999999999999999999999999999999986 677899999999999999999999
Q ss_pred hCCceeccceeEEEeeee
Q psy8956 191 MNGRMIQHNSTFVSLAEI 208 (333)
Q Consensus 191 l~~~~~~~~~i~v~~~~~ 208 (333)
+|+..++|+.|+|.++..
T Consensus 266 mNg~elgGr~LrV~kAi~ 283 (612)
T TIGR01645 266 MNLFDLGGQYLRVGKCVT 283 (612)
T ss_pred hCCCeeCCeEEEEEecCC
Confidence 999999999999988764
No 12
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=100.00 E-value=1e-36 Score=281.59 Aligned_cols=265 Identities=19% Similarity=0.293 Sum_probs=208.1
Q ss_pred ccccceEEEeCCCCCCCHHHHHHHHhcC------------CCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCC
Q psy8956 31 VYKENELHVNNLEPSVDNQALINEFKKF------------GTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98 (333)
Q Consensus 31 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~------------g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~ 98 (333)
....++|||+|||+.+|+++|+++|..+ +.|..+.+. .++|||||+|.+.++|..|| .|+|.
T Consensus 172 ~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~-----~~kg~afVeF~~~e~A~~Al-~l~g~ 245 (509)
T TIGR01642 172 TRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNIN-----KEKNFAFLEFRTVEEATFAM-ALDSI 245 (509)
T ss_pred CccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEC-----CCCCEEEEEeCCHHHHhhhh-cCCCe
Confidence 3567899999999999999999999975 245545443 35899999999999999999 59999
Q ss_pred ccCCeeeEEeeeccCC-CC---C--CC------------CCCCCcccCCCCeEEEeCCCCCCCHHHHHHHhhccCceEEE
Q psy8956 99 LIGSKPVIITFVELKP-GQ---R--SK------------PVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEV 160 (333)
Q Consensus 99 ~~~g~~i~v~~~~~~~-~~---~--~~------------~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~ 160 (333)
.+.|+.|.|....... .. . .. ............+|||+|||..+++++|.++|+.||.|..+
T Consensus 246 ~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~ 325 (509)
T TIGR01642 246 IYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAF 325 (509)
T ss_pred EeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEE
Confidence 9999999997321110 00 0 00 00011122345789999999999999999999999999999
Q ss_pred EEEeCC-CCCceeEEEEEeCCHHHHHHHHHHhCCceeccceeEEEeeeecCCCccCCCCC---------------CCCCC
Q psy8956 161 KIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVK---------------PPLLQ 224 (333)
Q Consensus 161 ~~~~~~-~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~~~~~~~~~---------------~~~~~ 224 (333)
.++.+. +|.++|||||+|.+.+.|..|+..|+|..+.|+.|.|.++............. .....
T Consensus 326 ~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (509)
T TIGR01642 326 NLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGANQATIDTSNGMAPVTLLAKALSQSILQIG 405 (509)
T ss_pred EEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCCCCCCccccccccccccccccchhhhcccc
Confidence 998875 78899999999999999999999999999999999999975433211110000 00112
Q ss_pred CCccceEEEecCCCCC----------CHHHHHHHhhccCCeeEEEeecC---------CcEEEEEECCHHHHHHHHHHhC
Q psy8956 225 PARKNKIFVANLPSNI----------NNSEFEELFARFGTITSSSLVSD---------KHIGFIEFIMPKHATHAVSTMN 285 (333)
Q Consensus 225 ~~~~~~l~v~nl~~~~----------~~~~l~~~f~~~g~v~~v~i~~~---------~~~~fV~f~~~~~A~~a~~~l~ 285 (333)
..++.+|+|.|+...- ..++|+++|++||.|..|.|+.. .|+|||+|.+.++|.+|++.||
T Consensus 406 ~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~ln 485 (509)
T TIGR01642 406 GKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMN 485 (509)
T ss_pred CCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcC
Confidence 3467899999996321 13679999999999999999854 4789999999999999999999
Q ss_pred CCeeCCeeEEEEecCC
Q psy8956 286 GHVFKSKPLKVTLSGT 301 (333)
Q Consensus 286 g~~l~g~~l~v~~a~~ 301 (333)
|..|+|+.|.|.|...
T Consensus 486 Gr~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 486 GRKFNDRVVVAAFYGE 501 (509)
T ss_pred CCEECCeEEEEEEeCH
Confidence 9999999999999765
No 13
>KOG0123|consensus
Probab=100.00 E-value=2.5e-36 Score=260.74 Aligned_cols=282 Identities=32% Similarity=0.579 Sum_probs=243.2
Q ss_pred CCCceeeccCCCCCCCCccccCcCCcCcccccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEe
Q psy8956 3 SKGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVF 82 (333)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f 82 (333)
|+|+++||+||.+ ++.. |||.||++.++..+|.++|+.||.|+++++..+..| ++|| ||+|
T Consensus 62 ~~~~~~rim~s~r---d~~~--------------~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g-~kg~-FV~f 122 (369)
T KOG0123|consen 62 LKGKPIRIMWSQR---DPSL--------------VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENG-SKGY-FVQF 122 (369)
T ss_pred cCCcEEEeehhcc---CCce--------------eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCC-ceee-EEEe
Confidence 7899999999999 6654 999999999999999999999999999999999988 9999 9999
Q ss_pred CCHHHHHHHHHHhcCCccCCeeeEEeeeccCCCCCCCCCCCCcccCCCCeEEEeCCCCCCCHHHHHHHhhccCceEEEEE
Q psy8956 83 NTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKI 162 (333)
Q Consensus 83 ~~~e~A~~al~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~ 162 (333)
.++++|++|++.+||..+.|+.|.|.....+.. +..+... .......+++.+.+.+.++..|...|..+|.+..+.+
T Consensus 123 ~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~e-r~~~~~~--~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v 199 (369)
T KOG0123|consen 123 ESEESAKKAIEKLNGMLLNGKKIYVGLFERKEE-REAPLGE--YKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAV 199 (369)
T ss_pred CCHHHHHHHHHHhcCcccCCCeeEEeeccchhh-hcccccc--hhhhhhhhheeccccccchHHHHHhhcccCcceEEEE
Confidence 999999999999999999999999986532222 2211112 3345567899999999999999999999999999999
Q ss_pred EeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeccceeEEEeeeecCCCccC-----CCCCCCCCCCCccceEEEecCC
Q psy8956 163 VRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF-----PKVKPPLLQPARKNKIFVANLP 237 (333)
Q Consensus 163 ~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~v~nl~ 237 (333)
..+..+.+++++||+|...++|..|+..+++..+.+..+.|..+......... ...............|+|.|++
T Consensus 200 ~~~~~g~~~~~gfv~f~~~e~a~~av~~l~~~~~~~~~~~V~~aqkk~e~~~~l~~~~~~~~~~~~~~~~~~nl~vknld 279 (369)
T KOG0123|consen 200 MRDSIGKSKGFGFVNFENPEDAKKAVETLNGKIFGDKELYVGRAQKKSEREAELKRKFEQEFAKRSVSLQGANLYVKNLD 279 (369)
T ss_pred eecCCCCCCCccceeecChhHHHHHHHhccCCcCCccceeecccccchhhHHHHhhhhHhhhhhccccccccccccccCc
Confidence 99998889999999999999999999999999999999999888763331111 1111222234567889999999
Q ss_pred CCCCHHHHHHHhhccCCeeEEEeecC-----CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEecCCCCCCC
Q psy8956 238 SNINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKPGVS 306 (333)
Q Consensus 238 ~~~~~~~l~~~f~~~g~v~~v~i~~~-----~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~a~~~~~~~ 306 (333)
..++.+.|++.|+.||.|..+++..+ +|++||.|.+.++|.+|+..+||..++|++|.|.++..++.+.
T Consensus 280 ~~~~~e~L~~~f~~~GeI~s~kv~~~~~g~skG~gfV~fs~~eeA~~A~~~~n~~~i~~k~l~vav~qr~~~r~ 353 (369)
T KOG0123|consen 280 ETLSDEKLRKIFSSFGEITSAKVMVDENGKSKGFGFVEFSSPEEAKKAMTEMNGRLIGGKPLYVAVAQRKEDRR 353 (369)
T ss_pred cccchhHHHHHHhcccceeeEEEEeccCCCccceEEEEcCCHHHHHHHHHhhChhhhcCCchhhhHHhhhccch
Confidence 99999999999999999999998876 8899999999999999999999999999999999998766554
No 14
>KOG0127|consensus
Probab=100.00 E-value=4.4e-35 Score=250.49 Aligned_cols=269 Identities=26% Similarity=0.392 Sum_probs=224.7
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeeccC
Q psy8956 35 NELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELK 113 (333)
Q Consensus 35 ~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~-~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~~~~~ 113 (333)
.+|||++||++++.++|.++|+..|+|..+.+..+. ++.++||+||+|.-.||+++|+..+++..+.|+.|.|.++..+
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 679999999999999999999999999999999888 7799999999999999999999999999999999999987433
Q ss_pred CCCCCC----------CCCC-----CcccCCCCeEEEeCCCCCCCHHHHHHHhhccCceEEEEEEeCCCCCceeEEEEEe
Q psy8956 114 PGQRSK----------PVGP-----EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQF 178 (333)
Q Consensus 114 ~~~~~~----------~~~~-----~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~v~f 178 (333)
+..... +... .....+...|.|+|||+.+...+|..+|+.||.|..+.++....|.-.|||||+|
T Consensus 86 ~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~f 165 (678)
T KOG0127|consen 86 ARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQF 165 (678)
T ss_pred ccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEE
Confidence 332200 0011 1122346789999999999999999999999999999999888888789999999
Q ss_pred CCHHHHHHHHHHhCCceeccceeEEEeeeecCCCccC---------------------------------------CC--
Q psy8956 179 FSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF---------------------------------------PK-- 217 (333)
Q Consensus 179 ~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~~~~~---------------------------------------~~-- 217 (333)
....+|..|+..+++..|.|++|-|.|+......... ..
T Consensus 166 k~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~ 245 (678)
T KOG0127|consen 166 KEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEET 245 (678)
T ss_pred eeHHHHHHHHHhccCceecCceeEEeeecccccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccc
Confidence 9999999999999999999999999998765430000 00
Q ss_pred ----------------------C------------CCC--CCCCCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEee
Q psy8956 218 ----------------------V------------KPP--LLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLV 261 (333)
Q Consensus 218 ----------------------~------------~~~--~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~ 261 (333)
. ... ......+.+|||.|||+++++++|.+.|++||.|..+.++
T Consensus 246 D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV 325 (678)
T KOG0127|consen 246 DGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIV 325 (678)
T ss_pred cccchhhhccccccccccccccccccccCcccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEE
Confidence 0 000 0011124799999999999999999999999999999888
Q ss_pred cC------CcEEEEEECCHHHHHHHHHHh-----CC-CeeCCeeEEEEecCCCC
Q psy8956 262 SD------KHIGFIEFIMPKHATHAVSTM-----NG-HVFKSKPLKVTLSGTKP 303 (333)
Q Consensus 262 ~~------~~~~fV~f~~~~~A~~a~~~l-----~g-~~l~g~~l~v~~a~~~~ 303 (333)
.+ .|.|||.|.+..+|..|++.. .| ..|+||.|+|..|-.+.
T Consensus 326 ~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv~~Av~Rk 379 (678)
T KOG0127|consen 326 KDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLKVTLAVTRK 379 (678)
T ss_pred eccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEeeeeccchH
Confidence 76 889999999999999999987 24 67899999999996654
No 15
>KOG0148|consensus
Probab=100.00 E-value=3.5e-35 Score=230.39 Aligned_cols=235 Identities=23% Similarity=0.406 Sum_probs=196.8
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeec
Q psy8956 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVE 111 (333)
Q Consensus 32 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~~~ 111 (333)
+..++|||+||+..+||+-|..+|++.|+|..++|+.+ .+.|.++.
T Consensus 4 ~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~----------------------------------e~~v~wa~ 49 (321)
T KOG0148|consen 4 DEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD----------------------------------ELKVNWAT 49 (321)
T ss_pred CCCceEEeeccChhhHHHHHHHHHHhccccccceeehh----------------------------------hhcccccc
Confidence 45578999999999999999999999999998888865 33343332
Q ss_pred cCCCCCCCCCCCCcccCCCCeEEEeCCCCCCCHHHHHHHhhccCceEEEEEEeCC-CCCceeEEEEEeCCHHHHHHHHHH
Q psy8956 112 LKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIE 190 (333)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~~~~~v~f~~~~~a~~a~~~ 190 (333)
.+ .. .+.+.....--++|+.|...++.+.|++.|.+||.|..++++++. +++++||+||-|...++|..|+..
T Consensus 50 ~p-~n-----Qsk~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~ 123 (321)
T KOG0148|consen 50 AP-GN-----QSKPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQ 123 (321)
T ss_pred Cc-cc-----CCCCccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHH
Confidence 11 00 011111124468999999999999999999999999999999997 899999999999999999999999
Q ss_pred hCCceeccceeEEEeeeecCCCccCCCCC---CCCCCCCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecCCcEE
Q psy8956 191 MNGRMIQHNSTFVSLAEIVPGKKVFPKVK---PPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKHIG 267 (333)
Q Consensus 191 l~~~~~~~~~i~v~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~~~~~ 267 (333)
++|..+.++.|+..|+..++......... .-....+..+++||+|++..+++++|++.|++||.|..|++.+++||+
T Consensus 124 MnGqWlG~R~IRTNWATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~qGYa 203 (321)
T KOG0148|consen 124 MNGQWLGRRTIRTNWATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQGYA 203 (321)
T ss_pred hCCeeeccceeeccccccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecccceE
Confidence 99999999999999998776432222211 112345667999999999999999999999999999999999999999
Q ss_pred EEEECCHHHHHHHHHHhCCCeeCCeeEEEEecCCCCCCC
Q psy8956 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKPGVS 306 (333)
Q Consensus 268 fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~a~~~~~~~ 306 (333)
||.|++.++|.+|+.++||..++|..++|.|-+.-....
T Consensus 204 FVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe~~~~~ 242 (321)
T KOG0148|consen 204 FVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKEGDDGI 242 (321)
T ss_pred EEEecchhhHHHHHHHhcCceeCceEEEEeccccCCCCC
Confidence 999999999999999999999999999999998865443
No 16
>KOG0123|consensus
Probab=100.00 E-value=2.6e-31 Score=229.64 Aligned_cols=238 Identities=36% Similarity=0.603 Sum_probs=214.9
Q ss_pred eEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeeccCCC
Q psy8956 36 ELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPG 115 (333)
Q Consensus 36 ~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~~~~~~~ 115 (333)
.|||+ +++|+..|+++|+.+|+|++++++++. + +.|||||.|.++++|.+|+..+|...+.|+.+.+.|+..++.
T Consensus 3 sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t-slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~~ 77 (369)
T KOG0123|consen 3 SLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T-SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDPS 77 (369)
T ss_pred ceecC---CcCChHHHHHHhcccCCceeEEEeecC-C-ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCCc
Confidence 48888 999999999999999999999999999 6 999999999999999999999999999999999999843332
Q ss_pred CCCCCCCCCcccCCCCeEEEeCCCCCCCHHHHHHHhhccCceEEEEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhCCce
Q psy8956 116 QRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRM 195 (333)
Q Consensus 116 ~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~~~~ 195 (333)
. ++|.||++.++...|...|+.||+|.+|++..+..| ++|+ ||+|.+++.|.+|+..++|..
T Consensus 78 ~----------------~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g-~kg~-FV~f~~e~~a~~ai~~~ng~l 139 (369)
T KOG0123|consen 78 L----------------VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENG-SKGY-FVQFESEESAKKAIEKLNGML 139 (369)
T ss_pred e----------------eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCC-ceee-EEEeCCHHHHHHHHHHhcCcc
Confidence 2 999999999999999999999999999999999888 7899 999999999999999999999
Q ss_pred eccceeEEEeeeecCCCccCCCCCCCCCCCCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC-----CcEEEEE
Q psy8956 196 IQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIE 270 (333)
Q Consensus 196 ~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~-----~~~~fV~ 270 (333)
+.++.+.+............... ....-+.+++.+.+...+++.|..+|+.||.|..+.++.+ ++++||.
T Consensus 140 l~~kki~vg~~~~~~er~~~~~~-----~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~ 214 (369)
T KOG0123|consen 140 LNGKKIYVGLFERKEEREAPLGE-----YKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVN 214 (369)
T ss_pred cCCCeeEEeeccchhhhcccccc-----hhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCcccee
Confidence 99999999887665553221111 2234567899999999999999999999999999999887 8899999
Q ss_pred ECCHHHHHHHHHHhCCCeeCCeeEEEEecCC
Q psy8956 271 FIMPKHATHAVSTMNGHVFKSKPLKVTLSGT 301 (333)
Q Consensus 271 f~~~~~A~~a~~~l~g~~l~g~~l~v~~a~~ 301 (333)
|.+.++|..|++.|+|..++|..+-|..+..
T Consensus 215 f~~~e~a~~av~~l~~~~~~~~~~~V~~aqk 245 (369)
T KOG0123|consen 215 FENPEDAKKAVETLNGKIFGDKELYVGRAQK 245 (369)
T ss_pred ecChhHHHHHHHhccCCcCCccceeeccccc
Confidence 9999999999999999999999999988766
No 17
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.97 E-value=2.8e-30 Score=222.25 Aligned_cols=171 Identities=25% Similarity=0.447 Sum_probs=152.3
Q ss_pred cccccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEe
Q psy8956 30 KVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIIT 108 (333)
Q Consensus 30 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~-~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~ 108 (333)
.....++|||+|||+++|+++|+++|+.||.|.+|+|+++. ++.++|||||+|.++++|.+|++.|++..+.++.|+|.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 34567899999999999999999999999999999999997 89999999999999999999999999999999999999
Q ss_pred eeccCCCCCCCCCCCCcccCCCCeEEEeCCCCCCCHHHHHHHhhccCceEEEEEEeCC-CCCceeEEEEEeCCHHHHHHH
Q psy8956 109 FVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKA 187 (333)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~~~~~v~f~~~~~a~~a 187 (333)
++.... ......+|||+|||..+++++|+++|+.||.|..+.++.+. +++++++|||+|.+.++|.+|
T Consensus 183 ~a~p~~-----------~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~A 251 (346)
T TIGR01659 183 YARPGG-----------ESIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEA 251 (346)
T ss_pred cccccc-----------cccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHH
Confidence 873211 12245689999999999999999999999999999999886 788899999999999999999
Q ss_pred HHHhCCceecc--ceeEEEeeeecCC
Q psy8956 188 IIEMNGRMIQH--NSTFVSLAEIVPG 211 (333)
Q Consensus 188 ~~~l~~~~~~~--~~i~v~~~~~~~~ 211 (333)
++.|++..+.+ +.+.|.++.....
T Consensus 252 i~~lng~~~~g~~~~l~V~~a~~~~~ 277 (346)
T TIGR01659 252 ISALNNVIPEGGSQPLTVRLAEEHGK 277 (346)
T ss_pred HHHhCCCccCCCceeEEEEECCcccc
Confidence 99999998866 5788887765433
No 18
>KOG0124|consensus
Probab=99.97 E-value=5.5e-31 Score=215.14 Aligned_cols=263 Identities=21% Similarity=0.430 Sum_probs=212.1
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeeccC
Q psy8956 35 NELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELK 113 (333)
Q Consensus 35 ~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~-~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~~~~~ 113 (333)
++|||+.|.+.+.|+.|+..|..||+|.+|.+-.|. ++.++|||||+|+-+|.|+.|++.+||.+++||.|+|.....-
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsNm 193 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNM 193 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCCC
Confidence 679999999999999999999999999999999999 9999999999999999999999999999999999999832111
Q ss_pred CCCCCCCCCCCcccCCCCeEEEeCCCCCCCHHHHHHHhhccCceEEEEEEeCCC-CCceeEEEEEeCCHHHHHHHHHHhC
Q psy8956 114 PGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAIIEMN 192 (333)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~-~~~~~~~~v~f~~~~~a~~a~~~l~ 192 (333)
+..-.--..........+.+||..+.++.++++|...|+.||.|..|.+.+.++ +..+||+|++|........|+..+|
T Consensus 194 pQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMN 273 (544)
T KOG0124|consen 194 PQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMN 273 (544)
T ss_pred cccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcc
Confidence 111000001112334567899999999999999999999999999999999984 5579999999999999999999999
Q ss_pred CceeccceeEEEeeeecCC-------------------------------------------------------------
Q psy8956 193 GRMIQHNSTFVSLAEIVPG------------------------------------------------------------- 211 (333)
Q Consensus 193 ~~~~~~~~i~v~~~~~~~~------------------------------------------------------------- 211 (333)
-..++|..++|-.+...+.
T Consensus 274 lFDLGGQyLRVGk~vTPP~aLl~Pat~s~~P~aaaVAaAAaTAKi~A~eAvAg~avlg~~G~~~~vSpA~~aa~p~~~l~ 353 (544)
T KOG0124|consen 274 LFDLGGQYLRVGKCVTPPDALLQPATVSAIPAAAAVAAAAATAKIMAAEAVAGSAVLGTVGAPGLVSPAPRAAQPLGTLP 353 (544)
T ss_pred hhhcccceEecccccCCCchhcCCCCcccCchHHHHHHHHHHHHHHHHHHhccCCcccccCCccccCccccccCCCCCcc
Confidence 9999999999988765544
Q ss_pred ---------------CccCCCC---------------CCC----------------------------------------
Q psy8956 212 ---------------KKVFPKV---------------KPP---------------------------------------- 221 (333)
Q Consensus 212 ---------------~~~~~~~---------------~~~---------------------------------------- 221 (333)
....+.. .++
T Consensus 354 qa~~a~~~pgvi~~vtP~~P~iP~~i~p~g~v~P~LA~ppT~g~L~kkkeKe~eelqpkl~~~~~L~~QE~msI~G~sAR 433 (544)
T KOG0124|consen 354 QAVMAAQAPGVITGVTPARPPIPVTIPPVGVVNPILASPPTLGLLEKKKEKEEEELQPKLERPEMLSEQEHMSISGSSAR 433 (544)
T ss_pred ccchhccCCceeccCCCCCCCCCccCCCcceechhhcCCCchhhcchhhhhhHhhhcccccCHHHhhhhhCccccCccHH
Confidence 0000000 000
Q ss_pred ------CCCCCccceEEEecC--CCCCCH---HHHHHHhhccCCeeEEEeecCCc----------EEEEEECCHHHHHHH
Q psy8956 222 ------LLQPARKNKIFVANL--PSNINN---SEFEELFARFGTITSSSLVSDKH----------IGFIEFIMPKHATHA 280 (333)
Q Consensus 222 ------~~~~~~~~~l~v~nl--~~~~~~---~~l~~~f~~~g~v~~v~i~~~~~----------~~fV~f~~~~~A~~a 280 (333)
......++++.+.|+ |.++++ .+|++.+++||.|.+|.|...+. -.||+|+...++-+|
T Consensus 434 hlvMqkLmR~~~S~VivLRNMV~P~DiDe~LegEi~EECgKfG~V~rViI~nekq~e~edaeiiVKIFVefS~~~e~~ra 513 (544)
T KOG0124|consen 434 HLVMQKLMRKQESTVIVLRNMVDPKDIDEDLEGEITEECGKFGAVNRVIIYNEKQGEEEDAEIIVKIFVEFSIASETHRA 513 (544)
T ss_pred HHHHHHHhccccCcEEEEeccCChhhhhhHHHHHHHHHHhcccceeEEEEEecccccccchhhhheeeeeechhhHHHHH
Confidence 001223568888888 555554 67999999999999998887622 369999999999999
Q ss_pred HHHhCCCeeCCeeEEEE
Q psy8956 281 VSTMNGHVFKSKPLKVT 297 (333)
Q Consensus 281 ~~~l~g~~l~g~~l~v~ 297 (333)
.+.|+|+.|+|+++...
T Consensus 514 k~ALdGRfFgGr~VvAE 530 (544)
T KOG0124|consen 514 KQALDGRFFGGRKVVAE 530 (544)
T ss_pred HHhhccceecCceeehh
Confidence 99999999999998764
No 19
>KOG0110|consensus
Probab=99.96 E-value=8.7e-29 Score=218.64 Aligned_cols=268 Identities=23% Similarity=0.380 Sum_probs=215.2
Q ss_pred cCcccccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEE
Q psy8956 28 NNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVII 107 (333)
Q Consensus 28 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v 107 (333)
.......+.++|+|||..+..++|...|..||.|..+.+. +.| ..|+|+|.++.+|.+|+..|.+..+....+.+
T Consensus 379 ~~~~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp--~~G---~~aiv~fl~p~eAr~Afrklaysr~k~~plyl 453 (725)
T KOG0110|consen 379 SQAERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLP--PGG---TGAIVEFLNPLEARKAFRKLAYSRFKSAPLYL 453 (725)
T ss_pred hhhhhhcceeeeccCccccccHHHHHHhhcccccceeecC--ccc---ceeeeeecCccchHHHHHHhchhhhccCcccc
Confidence 3355667889999999999999999999999999988444 322 23999999999999999999999888877777
Q ss_pred eeeccCCCC-------CCCCC---------------------CCC----------ccc-CCCCeEEEeCCCCCCCHHHHH
Q psy8956 108 TFVELKPGQ-------RSKPV---------------------GPE----------EKQ-YKKDKVFVKNLVETVDEEELK 148 (333)
Q Consensus 108 ~~~~~~~~~-------~~~~~---------------------~~~----------~~~-~~~~~l~v~~l~~~~~~~~l~ 148 (333)
.++...-.. ..... ... ... ....+||+.|+++.++.+++.
T Consensus 454 e~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~ 533 (725)
T KOG0110|consen 454 EWAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLE 533 (725)
T ss_pred ccChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHH
Confidence 654211111 00000 000 001 112239999999999999999
Q ss_pred HHhhccCceEEEEEEeCCCCC----ceeEEEEEeCCHHHHHHHHHHhCCceeccceeEEEeeeecCCCccCCCCCCCCCC
Q psy8956 149 SHFIKFGNIIEVKIVRDENGK----SKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQ 224 (333)
Q Consensus 149 ~~f~~~g~v~~~~~~~~~~~~----~~~~~~v~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~ 224 (333)
..|...|.|..+.+...+.+. +.|||||+|.+.++|+.|++.|+|+.+.|+.+.+.++...+..... .....
T Consensus 534 ~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k~~~~~g----K~~~~ 609 (725)
T KOG0110|consen 534 DLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISENKPASTVG----KKKSK 609 (725)
T ss_pred HHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccCccccccc----ccccc
Confidence 999999999999888776443 5699999999999999999999999999999999999732221111 11222
Q ss_pred CCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC------CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEe
Q psy8956 225 PARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTL 298 (333)
Q Consensus 225 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~------~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~ 298 (333)
...++.|+|.|+|+..+..+++.+|+.||.+..|+++.. +|||||+|-++.+|.+|+.+|.+..|.||.|.+.|
T Consensus 610 kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEw 689 (725)
T KOG0110|consen 610 KKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEW 689 (725)
T ss_pred ccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheeh
Confidence 233789999999999999999999999999999999976 88999999999999999999999999999999999
Q ss_pred cCCCCC
Q psy8956 299 SGTKPG 304 (333)
Q Consensus 299 a~~~~~ 304 (333)
|+.+..
T Consensus 690 A~~d~~ 695 (725)
T KOG0110|consen 690 AKSDNT 695 (725)
T ss_pred hccchH
Confidence 988654
No 20
>KOG0147|consensus
Probab=99.96 E-value=1.8e-29 Score=217.17 Aligned_cols=277 Identities=21% Similarity=0.288 Sum_probs=224.1
Q ss_pred CCcCcccccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCee
Q psy8956 26 KENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKP 104 (333)
Q Consensus 26 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~-~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~ 104 (333)
....+....+++|+..|+...++.+|.++|+.+|.|..|.++.++ ++.++|.|||+|.+.++...|+ .|.|..+.|..
T Consensus 171 ~l~~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~p 249 (549)
T KOG0147|consen 171 ILSPEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVP 249 (549)
T ss_pred cCCchHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCce
Confidence 444555677899999999999999999999999999999999999 8999999999999999999999 79999999999
Q ss_pred eEEeeeccCCCCC---CCCCCCCcccCCCCeEEEeCCCCCCCHHHHHHHhhccCceEEEEEEeCC-CCCceeEEEEEeCC
Q psy8956 105 VIITFVELKPGQR---SKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFS 180 (333)
Q Consensus 105 i~v~~~~~~~~~~---~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~~~~~v~f~~ 180 (333)
|.|+.+....... ...........+...|+|+||..+++++.++.+|++||.|..+.+..+. +|.++||+|++|.+
T Consensus 250 v~vq~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~ 329 (549)
T KOG0147|consen 250 VIVQLSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVN 329 (549)
T ss_pred eEecccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEec
Confidence 9999654222221 1111111222334449999999999999999999999999999999987 99999999999999
Q ss_pred HHHHHHHHHHhCCceeccceeEEEeeeecCCCccC---------------------------------------------
Q psy8956 181 YKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF--------------------------------------------- 215 (333)
Q Consensus 181 ~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~~~~~--------------------------------------------- 215 (333)
.++|..|+..|||..+-|+.|+|............
T Consensus 330 ~~~ar~a~e~lngfelAGr~ikV~~v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l 409 (549)
T KOG0147|consen 330 KEDARKALEQLNGFELAGRLIKVSVVTERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISAL 409 (549)
T ss_pred HHHHHHHHHHhccceecCceEEEEEeeeecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHH
Confidence 99999999999999999999998776544331100
Q ss_pred -----------CCC---CCCCCCC-------CccceEEEecC--CCCCC--------HHHHHHHhhccCCeeEEEeecC-
Q psy8956 216 -----------PKV---KPPLLQP-------ARKNKIFVANL--PSNIN--------NSEFEELFARFGTITSSSLVSD- 263 (333)
Q Consensus 216 -----------~~~---~~~~~~~-------~~~~~l~v~nl--~~~~~--------~~~l~~~f~~~g~v~~v~i~~~- 263 (333)
... ....... .++.++.++|+ |...+ .+|+.+.+++||+|..|.+...
T Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~ns 489 (549)
T KOG0147|consen 410 LLLAKLASAAQFNGVVRVRSVDPADASPAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKNS 489 (549)
T ss_pred HhccccchHHhhcCCcCccccCccccccccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccCC
Confidence 000 0001111 45678888888 33322 2789999999999999998877
Q ss_pred CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEecCCCC
Q psy8956 264 KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKP 303 (333)
Q Consensus 264 ~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~a~~~~ 303 (333)
.|+.||.|.+.++|..|+..|||.+|.|+.|+..|-....
T Consensus 490 ~g~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita~~~~~~~ 529 (549)
T KOG0147|consen 490 AGCVYVRCPSAEAAGTAVKALHGRWFAGRMITAKYLPLER 529 (549)
T ss_pred CceEEEecCcHHHHHHHHHHHhhhhhccceeEEEEeehhh
Confidence 4999999999999999999999999999999999987643
No 21
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.96 E-value=2.9e-28 Score=209.75 Aligned_cols=167 Identities=25% Similarity=0.470 Sum_probs=149.0
Q ss_pred ccCCCCeEEEeCCCCCCCHHHHHHHhhccCceEEEEEEeCC-CCCceeEEEEEeCCHHHHHHHHHHhCCceeccceeEEE
Q psy8956 126 KQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVS 204 (333)
Q Consensus 126 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~~~~~i~v~ 204 (333)
.....++|||++||.++++++|+++|+.+|.|..+.+..+. ++++++||||+|.++++|.+|+..|++..+.++.|+|.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 34467899999999999999999999999999999998875 78899999999999999999999999999999999999
Q ss_pred eeeecCCCccCCCCCCCCCCCCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC------CcEEEEEECCHHHHH
Q psy8956 205 LAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHAT 278 (333)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~------~~~~fV~f~~~~~A~ 278 (333)
++..... ....++|||+|||..+++++|+++|++||.|..++++.+ +++|||+|.+.++|.
T Consensus 183 ~a~p~~~-------------~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~ 249 (346)
T TIGR01659 183 YARPGGE-------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQ 249 (346)
T ss_pred ccccccc-------------ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHH
Confidence 8754221 123468999999999999999999999999999999877 579999999999999
Q ss_pred HHHHHhCCCeeCC--eeEEEEecCCCCCC
Q psy8956 279 HAVSTMNGHVFKS--KPLKVTLSGTKPGV 305 (333)
Q Consensus 279 ~a~~~l~g~~l~g--~~l~v~~a~~~~~~ 305 (333)
+|++.||+..+.| ++|+|.+|+.....
T Consensus 250 ~Ai~~lng~~~~g~~~~l~V~~a~~~~~~ 278 (346)
T TIGR01659 250 EAISALNNVIPEGGSQPLTVRLAEEHGKA 278 (346)
T ss_pred HHHHHhCCCccCCCceeEEEEECCccccc
Confidence 9999999999876 79999999875443
No 22
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.96 E-value=1.8e-27 Score=210.18 Aligned_cols=197 Identities=27% Similarity=0.408 Sum_probs=161.6
Q ss_pred CCCCceeeccCCCCCCCCccccCcCCcCcccccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCC-CCCcccEEEE
Q psy8956 2 KSKGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAII 80 (333)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~-~~~~~g~a~v 80 (333)
.|.|+++++.|+...++ ....++|||+|||+.+++++|+++|+.||.|..+.++.+. ++.++|+|||
T Consensus 69 ~l~g~~i~v~~a~~~~~------------~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv 136 (352)
T TIGR01661 69 RLQNKTIKVSYARPSSD------------SIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFI 136 (352)
T ss_pred EECCeeEEEEeeccccc------------ccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEE
Confidence 46799999999855211 1234579999999999999999999999999999999887 7889999999
Q ss_pred EeCCHHHHHHHHHHhcCCccCC--eeeEEeeeccCCCCCCC--------------C------------------------
Q psy8956 81 VFNTPAEAKKARVEMNGHLIGS--KPVIITFVELKPGQRSK--------------P------------------------ 120 (333)
Q Consensus 81 ~f~~~e~A~~al~~l~~~~~~g--~~i~v~~~~~~~~~~~~--------------~------------------------ 120 (333)
+|.+.++|..|++.|+|..+.| ..+.|.++..+...... .
T Consensus 137 ~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (352)
T TIGR01661 137 RFDKRDEADRAIKTLNGTTPSGCTEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFR 216 (352)
T ss_pred EECCHHHHHHHHHHhCCCccCCCceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccc
Confidence 9999999999999999999877 56677765322210000 0
Q ss_pred ---------------------------CC----------------CCcccCCCCeEEEeCCCCCCCHHHHHHHhhccCce
Q psy8956 121 ---------------------------VG----------------PEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNI 157 (333)
Q Consensus 121 ---------------------------~~----------------~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v 157 (333)
.. .........+|||+|||..+++++|+++|++||.|
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v 296 (352)
T TIGR01661 217 PSAGDFTAVLAHQQQQHAVAQQHAAQRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAV 296 (352)
T ss_pred cCcchhhhhhhhhhhhcccccccccccCCCccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCe
Confidence 00 00001122369999999999999999999999999
Q ss_pred EEEEEEeCC-CCCceeEEEEEeCCHHHHHHHHHHhCCceeccceeEEEeeeecC
Q psy8956 158 IEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVP 210 (333)
Q Consensus 158 ~~~~~~~~~-~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~ 210 (333)
.++.+..+. ++.++|||||+|.+.++|..|+..|+|..+.|+.|.|.+...+.
T Consensus 297 ~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~~~ 350 (352)
T TIGR01661 297 QNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTNKA 350 (352)
T ss_pred EEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccCCC
Confidence 999999987 89999999999999999999999999999999999999986554
No 23
>KOG0148|consensus
Probab=99.96 E-value=5.2e-28 Score=190.19 Aligned_cols=193 Identities=25% Similarity=0.476 Sum_probs=166.3
Q ss_pred eeeccCCCCCCCCccccCcCCcCcccccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCC-CCCcccEEEEEeCCH
Q psy8956 7 ILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTP 85 (333)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~-~~~~~g~a~v~f~~~ 85 (333)
+++++|... |..++++. ...+..|+|+.|.+.++-++|++.|.+||+|.+.+|++|. +++++||+||.|.+.
T Consensus 42 e~~v~wa~~----p~nQsk~t---~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k 114 (321)
T KOG0148|consen 42 ELKVNWATA----PGNQSKPT---SNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNK 114 (321)
T ss_pred hhccccccC----cccCCCCc---cccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccch
Confidence 678888855 43332222 2236789999999999999999999999999999999999 999999999999999
Q ss_pred HHHHHHHHHhcCCccCCeeeEEeeeccCCCCCCCCCC-----CCcccCCCCeEEEeCCCCCCCHHHHHHHhhccCceEEE
Q psy8956 86 AEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVG-----PEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEV 160 (333)
Q Consensus 86 e~A~~al~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~-----~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~ 160 (333)
++|+.||+.|+|.=|.+|.|+..|+..++........ -+.....++++|++|++..++++++++.|++||+|.+|
T Consensus 115 ~dAEnAI~~MnGqWlG~R~IRTNWATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EV 194 (321)
T KOG0148|consen 115 EDAENAIQQMNGQWLGRRTIRTNWATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEV 194 (321)
T ss_pred HHHHHHHHHhCCeeeccceeeccccccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEE
Confidence 9999999999999999999999999777744322221 11344567899999999999999999999999999999
Q ss_pred EEEeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeccceeEEEeeeecCC
Q psy8956 161 KIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPG 211 (333)
Q Consensus 161 ~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~ 211 (333)
++.++ +||+||.|.+.|.|..|+-.+|+..+.|+.++..|......
T Consensus 195 RvFk~-----qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe~~~ 240 (321)
T KOG0148|consen 195 RVFKD-----QGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKEGDD 240 (321)
T ss_pred EEecc-----cceEEEEecchhhHHHHHHHhcCceeCceEEEEeccccCCC
Confidence 99998 79999999999999999999999999999999999876544
No 24
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.96 E-value=1.3e-27 Score=216.18 Aligned_cols=176 Identities=25% Similarity=0.419 Sum_probs=150.6
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHhhccCceEEEEEEeCC-CCCceeEEEEEeCCHHHHHHHHHHhCCceeccceeEEEeee
Q psy8956 129 KKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207 (333)
Q Consensus 129 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~ 207 (333)
..++|||+||+..+++++|+++|+.||.|.++.+..++ +++++|||||+|.+.++|.+|+..++|..+.|+.+.|.+..
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence 45789999999999999999999999999999999886 78899999999999999999999999999999999998654
Q ss_pred ecCCCccCCCCCCCCCCCCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC------CcEEEEEECCHHHHHHHH
Q psy8956 208 IVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAV 281 (333)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~------~~~~fV~f~~~~~A~~a~ 281 (333)
........ ...........++|||+|||..+++++|+++|+.||.|..+++..+ +|||||+|.+.++|.+|+
T Consensus 186 ~~p~a~~~--~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI 263 (612)
T TIGR01645 186 NMPQAQPI--IDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAI 263 (612)
T ss_pred cccccccc--cccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHH
Confidence 32211100 0000111224578999999999999999999999999999999875 789999999999999999
Q ss_pred HHhCCCeeCCeeEEEEecCCCCCCC
Q psy8956 282 STMNGHVFKSKPLKVTLSGTKPGVS 306 (333)
Q Consensus 282 ~~l~g~~l~g~~l~v~~a~~~~~~~ 306 (333)
+.|||..|+|+.|+|.++..++...
T Consensus 264 ~amNg~elgGr~LrV~kAi~pP~~~ 288 (612)
T TIGR01645 264 ASMNLFDLGGQYLRVGKCVTPPDAL 288 (612)
T ss_pred HHhCCCeeCCeEEEEEecCCCcccc
Confidence 9999999999999999998765443
No 25
>KOG0127|consensus
Probab=99.96 E-value=6.4e-28 Score=206.84 Aligned_cols=283 Identities=25% Similarity=0.366 Sum_probs=209.8
Q ss_pred CCCCceeeccCCCCCCCC------------ccccCcCCcCc--ccccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEe
Q psy8956 2 KSKGKILEASWDEGISDD------------EGARSNKENNK--VYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVA 67 (333)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~--~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~ 67 (333)
+..|+.+++-.+..+... ...+.+..... ..+..+|.|+|||+.+.+.+|+.+|+.||.|..|.|.
T Consensus 71 kf~Gr~l~v~~A~~R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP 150 (678)
T KOG0127|consen 71 KFEGRILNVDPAKKRARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIP 150 (678)
T ss_pred cccceecccccccccccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcc
Confidence 467788877777553321 11112111112 3447899999999999999999999999999999999
Q ss_pred eCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeeccCCCCCCC----------------------------
Q psy8956 68 RNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSK---------------------------- 119 (333)
Q Consensus 68 ~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~~~~~~~~~~~---------------------------- 119 (333)
+...|.-+|||||+|....+|..|++.+|+..|.|+.|-|.|+..+......
T Consensus 151 ~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~ 230 (678)
T KOG0127|consen 151 RKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDF 230 (678)
T ss_pred cCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecccccccccchhhhhhhhhccchhhhccccccccccc
Confidence 8888888899999999999999999999999999999999998554332210
Q ss_pred ------------C---------------------------CCC------------CcccCCCCeEEEeCCCCCCCHHHHH
Q psy8956 120 ------------P---------------------------VGP------------EEKQYKKDKVFVKNLVETVDEEELK 148 (333)
Q Consensus 120 ------------~---------------------------~~~------------~~~~~~~~~l~v~~l~~~~~~~~l~ 148 (333)
. +.. ........+|||+|||+++++++|.
T Consensus 231 ~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~ 310 (678)
T KOG0127|consen 231 DEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELK 310 (678)
T ss_pred chhcccccccccccccccchhhhccccccccccccccccccccCcccchhccccccccccccceEEEecCCccccHHHHH
Confidence 0 000 0011122579999999999999999
Q ss_pred HHhhccCceEEEEEEeCC-CCCceeEEEEEeCCHHHHHHHHHHhC-----C-ceeccceeEEEeeeecCCCcc-------
Q psy8956 149 SHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEMN-----G-RMIQHNSTFVSLAEIVPGKKV------- 214 (333)
Q Consensus 149 ~~f~~~g~v~~~~~~~~~-~~~~~~~~~v~f~~~~~a~~a~~~l~-----~-~~~~~~~i~v~~~~~~~~~~~------- 214 (333)
++|+.||.|....++.++ +++++|.|||.|.+...|+.||.... + ..+.|+.+.|..+........
T Consensus 311 ~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv~~Av~RkeA~dmeqkk~~ 390 (678)
T KOG0127|consen 311 EHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLKVTLAVTRKEAADMEQKKKR 390 (678)
T ss_pred HHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEeeeeccchHHHHHHHHHhhh
Confidence 999999999998888776 89999999999999999999998762 2 558899999988876544100
Q ss_pred -----------------------CCCC------------------CCCCCCCCccceEEEecCCCCCCHHHHHHHhhc--
Q psy8956 215 -----------------------FPKV------------------KPPLLQPARKNKIFVANLPSNINNSEFEELFAR-- 251 (333)
Q Consensus 215 -----------------------~~~~------------------~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~-- 251 (333)
+... ..........+.|.|.|||..+++..|..++-.
T Consensus 391 Kk~~gkrNLyLa~EG~I~~gt~aAeglS~~Dm~kRer~~~~k~k~lknpnlhlSrtRL~i~Nlpramn~KqL~~Ll~~Av 470 (678)
T KOG0127|consen 391 KKPKGKRNLYLAREGLIRDGTPAAEGLSATDMAKRERIAERKRKKLKNPNLHLSRTRLVIRNLPRAMNPKQLNRLLRDAV 470 (678)
T ss_pred hccCCccceeeeccCccccCChhhcccchhhHHHHHHHHHHHHHhhcCCceeeehhhhhhhcCccccCHHHHHHHHHHHH
Confidence 0000 000111223468999999999999999888743
Q ss_pred --c-CCeeE-EEeecC---------CcEEEEEECCHHHHHHHHHHh
Q psy8956 252 --F-GTITS-SSLVSD---------KHIGFIEFIMPKHATHAVSTM 284 (333)
Q Consensus 252 --~-g~v~~-v~i~~~---------~~~~fV~f~~~~~A~~a~~~l 284 (333)
| +.+.. ++.+.. .+|+|+.|..++.|.+|+..+
T Consensus 471 ~~~at~~kk~~R~~~~le~~~k~~s~g~aF~~f~EhEhalkalk~~ 516 (678)
T KOG0127|consen 471 TGFATKVKKCIRQIKFLEEEKKNYSEGYAFVGFTEHEHALKALKVL 516 (678)
T ss_pred hhhhhhcchhhhhhhhHHhhhhcccccccccCccHHHHHHHhhhcc
Confidence 2 22221 233322 789999999999999999865
No 26
>KOG4212|consensus
Probab=99.95 E-value=6.6e-25 Score=183.62 Aligned_cols=181 Identities=20% Similarity=0.277 Sum_probs=147.9
Q ss_pred cCCcCcccccceEEEeCCCCCCCHHHHHHHHhc-CCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCe
Q psy8956 25 NKENNKVYKENELHVNNLEPSVDNQALINEFKK-FGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSK 103 (333)
Q Consensus 25 ~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~-~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~ 103 (333)
.+-.+.....+.+||+|||++....+|++++.. .|.|..|.++.|.+|+++|.|.|+|+++|.+++|++.||...+.|+
T Consensus 35 s~~gn~~~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR 114 (608)
T KOG4212|consen 35 SQGGNVAARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGR 114 (608)
T ss_pred CCCCCcccccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCc
Confidence 344555566677999999999999999999966 6799999999999999999999999999999999999999999999
Q ss_pred eeEEeeeccCCCCC--------------------------------------------CCCC------------------
Q psy8956 104 PVIITFVELKPGQR--------------------------------------------SKPV------------------ 121 (333)
Q Consensus 104 ~i~v~~~~~~~~~~--------------------------------------------~~~~------------------ 121 (333)
+|.|.-......+. ....
T Consensus 115 ~l~vKEd~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~ 194 (608)
T KOG4212|consen 115 ELVVKEDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNY 194 (608)
T ss_pred eEEEeccCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhh
Confidence 99998432211111 0000
Q ss_pred ------------CCCcccCCCCeEEEeCCCCCCCHHHHHHHhhccCceEEEEEEeCCCCCceeEEEEEeCCHHHHHHHHH
Q psy8956 122 ------------GPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAII 189 (333)
Q Consensus 122 ------------~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~ 189 (333)
.-.-..+...++||.||...+....|.+.|...|.|.++.+..++.|.++++|.++|..+-.|-.|+.
T Consensus 195 ~lfgl~~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIs 274 (608)
T KOG4212|consen 195 NLFGLSASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAIS 274 (608)
T ss_pred hcccchhhhhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHHHHH
Confidence 00012233457899999999999999999999999999999999988999999999999999999999
Q ss_pred HhCCceeccceeEEEe
Q psy8956 190 EMNGRMIQHNSTFVSL 205 (333)
Q Consensus 190 ~l~~~~~~~~~i~v~~ 205 (333)
.+++.-...++..+.+
T Consensus 275 ml~~~g~~~~~~~~Rl 290 (608)
T KOG4212|consen 275 MLDRQGLFDRRMTVRL 290 (608)
T ss_pred hhccCCCccccceeec
Confidence 9887666666666655
No 27
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.94 E-value=3.3e-25 Score=200.39 Aligned_cols=211 Identities=21% Similarity=0.297 Sum_probs=168.4
Q ss_pred cceEEEeCCCCCCCHHHHHHHHhcCC-CeeEEEEeeCC--CCCcccEEEEEeCCHHHHHHHHHHhcCC--ccCCeeeEEe
Q psy8956 34 ENELHVNNLEPSVDNQALINEFKKFG-TLRDVRVARNK--NDESRGFAIIVFNTPAEAKKARVEMNGH--LIGSKPVIIT 108 (333)
Q Consensus 34 ~~~l~V~nLp~~~t~~~l~~~f~~~g-~v~~v~i~~~~--~~~~~g~a~v~f~~~e~A~~al~~l~~~--~~~g~~i~v~ 108 (333)
.++|||+|||+++++++|.+.|.+++ .+.++.++... .+.++|||||+|.+.++|..|+..|+.. .+.|+.|.|.
T Consensus 138 ~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~Vd 217 (578)
T TIGR01648 138 NCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVD 217 (578)
T ss_pred CceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEE
Confidence 57899999999999999999999987 35555444332 4578999999999999999999888643 5789999999
Q ss_pred eeccCCCCCCCCCCCCcccCCCCeEEEeCCCCCCCHHHHHHHhhcc--CceEEEEEEeCCCCCceeEEEEEeCCHHHHHH
Q psy8956 109 FVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKF--GNIIEVKIVRDENGKSKGFGFIQFFSYKAAEK 186 (333)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~--g~v~~~~~~~~~~~~~~~~~~v~f~~~~~a~~ 186 (333)
++....... ........+|||+||+..+++++|+++|+.| |.|.++.+.+ ++|||+|.+.++|.+
T Consensus 218 wA~p~~~~d------~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r-------gfAFVeF~s~e~A~k 284 (578)
T TIGR01648 218 WAEPEEEVD------EDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR-------DYAFVHFEDREDAVK 284 (578)
T ss_pred eeccccccc------ccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec-------CeEEEEeCCHHHHHH
Confidence 884332211 1112345789999999999999999999999 9999987664 599999999999999
Q ss_pred HHHHhCCceeccceeEEEeeeecCCCcc---------------CCCCCCCCCCCCccceEEEecCCCCCCHHHHHHHhhc
Q psy8956 187 AIIEMNGRMIQHNSTFVSLAEIVPGKKV---------------FPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFAR 251 (333)
Q Consensus 187 a~~~l~~~~~~~~~i~v~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~ 251 (333)
|+..+++..+.|+.|.|.++.+...... ...........+.+.++++.|+++..+.+.+.++|..
T Consensus 285 Ai~~lnG~~i~Gr~I~V~~Akp~~~~~~~~~~rg~gg~~~~~~~~~~~~g~~~sp~s~~~~~g~~~~~~~~~~~~~~f~~ 364 (578)
T TIGR01648 285 AMDELNGKELEGSEIEVTLAKPVDKKSYVRYTRGTGGRGKERQAARQSLGQVYDPASRSLAYEDYYYHPPYAPSLHFPRM 364 (578)
T ss_pred HHHHhCCCEECCEEEEEEEccCCCcccccccccccCCCcccccccccccCcccCccccccccccccccccccchhhcccc
Confidence 9999999999999999999976543211 0111112234456789999999999999999999999
Q ss_pred cCCeeE
Q psy8956 252 FGTITS 257 (333)
Q Consensus 252 ~g~v~~ 257 (333)
+|.|..
T Consensus 365 ~g~~~~ 370 (578)
T TIGR01648 365 PGPIRG 370 (578)
T ss_pred CccccC
Confidence 998753
No 28
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.94 E-value=5.9e-25 Score=200.62 Aligned_cols=172 Identities=27% Similarity=0.461 Sum_probs=147.7
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHhhccCceEEEEEEeCC-CCCceeEEEEEeCCHHHHHHHHHHhCCceeccceeEEEee
Q psy8956 128 YKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLA 206 (333)
Q Consensus 128 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~ 206 (333)
...++|||+|||..+++++|.++|+.+|.|..+.++.+. ++.++|+|||+|.+.++|.+|+. +++..+.|+.+.|...
T Consensus 87 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~~ 165 (457)
T TIGR01622 87 RDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQSS 165 (457)
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEeec
Confidence 356799999999999999999999999999999999875 68899999999999999999996 8999999999999886
Q ss_pred eecCCCccCCCCCCCCCCCCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC------CcEEEEEECCHHHHHHH
Q psy8956 207 EIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHA 280 (333)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~------~~~~fV~f~~~~~A~~a 280 (333)
............. .....+..++|||+|||..+++++|+++|++||.|..|.+..+ +|+|||+|.+.++|.+|
T Consensus 166 ~~~~~~~~~~~~~-~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A 244 (457)
T TIGR01622 166 QAEKNRAAKAATH-QPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEA 244 (457)
T ss_pred chhhhhhhhcccc-cCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHH
Confidence 5433222110111 1111233789999999999999999999999999999999855 68999999999999999
Q ss_pred HHHhCCCeeCCeeEEEEecCC
Q psy8956 281 VSTMNGHVFKSKPLKVTLSGT 301 (333)
Q Consensus 281 ~~~l~g~~l~g~~l~v~~a~~ 301 (333)
++.|||..|.|++|.|.|+..
T Consensus 245 ~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 245 LEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred HHhcCCcEECCEEEEEEEccC
Confidence 999999999999999999874
No 29
>KOG0144|consensus
Probab=99.93 E-value=1.5e-25 Score=187.23 Aligned_cols=170 Identities=26% Similarity=0.506 Sum_probs=148.4
Q ss_pred ccCCCCeEEEeCCCCCCCHHHHHHHhhccCceEEEEEEeCC-CCCceeEEEEEeCCHHHHHHHHHHhCCce-ecc--cee
Q psy8956 126 KQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEMNGRM-IQH--NST 201 (333)
Q Consensus 126 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~~~~~v~f~~~~~a~~a~~~l~~~~-~~~--~~i 201 (333)
.+...-++||+.+|..++|.+|+++|++||.|.+|.+++++ ++.++|+|||.|.+.++|.+|+..||... +.| .++
T Consensus 30 ~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pv 109 (510)
T KOG0144|consen 30 PDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPV 109 (510)
T ss_pred CCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcce
Confidence 33455689999999999999999999999999999999998 78999999999999999999999998755 444 557
Q ss_pred EEEeeeecCCCccCCCCCCCCCCCCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC-----CcEEEEEECCHHH
Q psy8956 202 FVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKH 276 (333)
Q Consensus 202 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~-----~~~~fV~f~~~~~ 276 (333)
.|++++...++. ...+.|||+-|+..+++.+++++|++||.|++|.|.++ ||+|||+|.+.+-
T Consensus 110 qvk~Ad~E~er~------------~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~ 177 (510)
T KOG0144|consen 110 QVKYADGERERI------------VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEM 177 (510)
T ss_pred eecccchhhhcc------------ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHH
Confidence 777765544421 34578999999999999999999999999999999998 9999999999999
Q ss_pred HHHHHHHhCCC-eeCC--eeEEEEecCCCCCCCC
Q psy8956 277 ATHAVSTMNGH-VFKS--KPLKVTLSGTKPGVSI 307 (333)
Q Consensus 277 A~~a~~~l~g~-~l~g--~~l~v~~a~~~~~~~~ 307 (333)
|..|++.|||. .+.| .+|.|+||..++++..
T Consensus 178 A~~Aika~ng~~tmeGcs~PLVVkFADtqkdk~~ 211 (510)
T KOG0144|consen 178 AVAAIKALNGTQTMEGCSQPLVVKFADTQKDKDG 211 (510)
T ss_pred HHHHHHhhccceeeccCCCceEEEecccCCCchH
Confidence 99999999995 4665 7899999998877754
No 30
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.93 E-value=6e-24 Score=196.68 Aligned_cols=177 Identities=20% Similarity=0.318 Sum_probs=145.2
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeee
Q psy8956 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFV 110 (333)
Q Consensus 32 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~-~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~~ 110 (333)
...++|||+|||..+|+++|+++|+.||.|..+.++++. +|.++|||||+|.+.++|..|++.|+|..+.|+.|.|.++
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 456899999999999999999999999999999999987 8899999999999999999999999999999999999987
Q ss_pred ccCCCCCCCCCCC-----------------CcccCCCCeEEEeCCCCCC----------CHHHHHHHhhccCceEEEEEE
Q psy8956 111 ELKPGQRSKPVGP-----------------EEKQYKKDKVFVKNLVETV----------DEEELKSHFIKFGNIIEVKIV 163 (333)
Q Consensus 111 ~~~~~~~~~~~~~-----------------~~~~~~~~~l~v~~l~~~~----------~~~~l~~~f~~~g~v~~~~~~ 163 (333)
............. .....+...|+|.|+.... ..++|++.|+.||.|..|.++
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~ 452 (509)
T TIGR01642 373 CVGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIP 452 (509)
T ss_pred ccCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEee
Confidence 4332211100000 0112345678999885321 236789999999999999998
Q ss_pred eCC----CCCceeEEEEEeCCHHHHHHHHHHhCCceeccceeEEEeeee
Q psy8956 164 RDE----NGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEI 208 (333)
Q Consensus 164 ~~~----~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~ 208 (333)
... ++...|++||+|.+.++|..|+..|+|..+.|+.|.+.+...
T Consensus 453 ~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 453 RPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGE 501 (509)
T ss_pred ccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeCH
Confidence 752 345678999999999999999999999999999999998754
No 31
>KOG0145|consensus
Probab=99.92 E-value=3.7e-24 Score=167.65 Aligned_cols=168 Identities=30% Similarity=0.545 Sum_probs=150.3
Q ss_pred ccCCCCeEEEeCCCCCCCHHHHHHHhhccCceEEEEEEeCC-CCCceeEEEEEeCCHHHHHHHHHHhCCceeccceeEEE
Q psy8956 126 KQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVS 204 (333)
Q Consensus 126 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~~~~~i~v~ 204 (333)
..+....|.|.-||.++|+++++.+|...|.|++|++++++ +|.+-||+||.|.++++|.+|+..|+|..+..+.|+|.
T Consensus 37 t~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVS 116 (360)
T KOG0145|consen 37 TDESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVS 116 (360)
T ss_pred cCcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEE
Confidence 34455689999999999999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred eeeecCCCccCCCCCCCCCCCCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC------CcEEEEEECCHHHHH
Q psy8956 205 LAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHAT 278 (333)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~------~~~~fV~f~~~~~A~ 278 (333)
++.+... ......|||++||..++..+|.++|++||.|.--+|+.+ +|.+||.|+...+|+
T Consensus 117 yARPSs~-------------~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe 183 (360)
T KOG0145|consen 117 YARPSSD-------------SIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAE 183 (360)
T ss_pred eccCChh-------------hhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHH
Confidence 9854432 234467999999999999999999999999988888777 899999999999999
Q ss_pred HHHHHhCCCeeCC--eeEEEEecCCCCCCC
Q psy8956 279 HAVSTMNGHVFKS--KPLKVTLSGTKPGVS 306 (333)
Q Consensus 279 ~a~~~l~g~~l~g--~~l~v~~a~~~~~~~ 306 (333)
.|+..|||..=-| .+|+|.||....+..
T Consensus 184 ~AIk~lNG~~P~g~tepItVKFannPsq~t 213 (360)
T KOG0145|consen 184 EAIKGLNGQKPSGCTEPITVKFANNPSQKT 213 (360)
T ss_pred HHHHhccCCCCCCCCCCeEEEecCCccccc
Confidence 9999999987654 789999998865443
No 32
>KOG1190|consensus
Probab=99.92 E-value=3.7e-23 Score=171.82 Aligned_cols=265 Identities=18% Similarity=0.272 Sum_probs=198.7
Q ss_pred CcccccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCc--cCCeeeE
Q psy8956 29 NKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHL--IGSKPVI 106 (333)
Q Consensus 29 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~--~~g~~i~ 106 (333)
....+++.|+++|||++++|++|..++..||.|..+.+.+. +..||++|.+.++|...+.+..... +.|+.+.
T Consensus 23 ~~~~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkG-----knQAflem~d~~sAvtmv~~y~~~~p~lr~~~~y 97 (492)
T KOG1190|consen 23 SMAEPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKG-----KNQAFLEMADEESAVTMVNYYTSVTPVLRGQPIY 97 (492)
T ss_pred cccCCcceeEeccCCccccHHHHHHhcccccceeeeeeecc-----chhhhhhhcchhhhhheeecccccCccccCccee
Confidence 34568899999999999999999999999999999988875 4479999999999998776655553 7888888
Q ss_pred EeeeccCCCCCC----------------------CCCCC-----CcccC--CCCeEEEeCCCCCCCHHHHHHHhhccCce
Q psy8956 107 ITFVELKPGQRS----------------------KPVGP-----EEKQY--KKDKVFVKNLVETVDEEELKSHFIKFGNI 157 (333)
Q Consensus 107 v~~~~~~~~~~~----------------------~~~~~-----~~~~~--~~~~l~v~~l~~~~~~~~l~~~f~~~g~v 157 (333)
|+|+-....... .+... ..... .-..+++.++-..++.+-|+.+|++||.|
T Consensus 98 iq~sn~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS~fG~V 177 (492)
T KOG1190|consen 98 IQYSNHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFSKFGFV 177 (492)
T ss_pred ehhhhHHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHHhhccee
Confidence 887521111000 00000 11111 12246778889999999999999999999
Q ss_pred EEEEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeccce--eEEEeeeecCC----------CccCCC--------
Q psy8956 158 IEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNS--TFVSLAEIVPG----------KKVFPK-------- 217 (333)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~~~~~--i~v~~~~~~~~----------~~~~~~-------- 217 (333)
.+|.......+. .|+|+|.+.+.|+.|...|+|..|.+-+ +++.++....- ....+.
T Consensus 178 lKIiTF~Knn~F---QALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~LnvKynndkSRDyTnp~LP~gd~~p 254 (492)
T KOG1190|consen 178 LKIITFTKNNGF---QALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTDLNVKYNNDKSRDYTNPDLPVGDGQP 254 (492)
T ss_pred EEEEEEecccch---hhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcccceeeccccccccccCCCCCCCcccc
Confidence 998877764433 5899999999999999999998866544 45544432111 000000
Q ss_pred ---------------------CCCC---------CCCCCc--cceEEEecCC-CCCCHHHHHHHhhccCCeeEEEeecC-
Q psy8956 218 ---------------------VKPP---------LLQPAR--KNKIFVANLP-SNINNSEFEELFARFGTITSSSLVSD- 263 (333)
Q Consensus 218 ---------------------~~~~---------~~~~~~--~~~l~v~nl~-~~~~~~~l~~~f~~~g~v~~v~i~~~- 263 (333)
..+. .....+ ..+|.|+|+. ..++.+.|..+|+-||.|.+|+|+..
T Consensus 255 ~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk 334 (492)
T KOG1190|consen 255 SLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK 334 (492)
T ss_pred ccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC
Confidence 0000 011112 4788999996 67999999999999999999999987
Q ss_pred CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEecCC
Q psy8956 264 KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGT 301 (333)
Q Consensus 264 ~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~a~~ 301 (333)
+..|+|+|.+...|.-|++.|+|+.|.|++|+|.+++-
T Consensus 335 kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH 372 (492)
T KOG1190|consen 335 KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKH 372 (492)
T ss_pred CcceeeeecchhHHHHHHHHhhcceecCceEEEeeccC
Confidence 66899999999999999999999999999999999964
No 33
>KOG1456|consensus
Probab=99.91 E-value=1.7e-21 Score=160.26 Aligned_cols=288 Identities=16% Similarity=0.185 Sum_probs=223.8
Q ss_pred ccCcCCcCcccccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCC--c
Q psy8956 22 ARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH--L 99 (333)
Q Consensus 22 ~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~--~ 99 (333)
...+.+.+++..+..|.|++|=..+++.+|.+.++.||+|..+.++. .+..|.|+|++++.|+.|+...... .
T Consensus 19 ~e~~~dphk~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P-----~~r~alvefedi~~akn~Vnfaa~n~i~ 93 (494)
T KOG1456|consen 19 REDNADPHKPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMP-----HKRQALVEFEDIEGAKNCVNFAADNQIY 93 (494)
T ss_pred cccCCCCCCCCCCceEEEeccccccchhHHHHHHhcCCceEEEEecc-----ccceeeeeeccccchhhheehhccCccc
Confidence 34456667778889999999999999999999999999998887775 4778999999999999999754333 4
Q ss_pred cCCeeeEEeeeccCCCCCCCCCCCCcccCCCCeEEEeCCCC--CCCHHHHHHHhhccCceEEEEEEeCCCCCceeEEEEE
Q psy8956 100 IGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVE--TVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQ 177 (333)
Q Consensus 100 ~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~--~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~v~ 177 (333)
+.|+...+.|+......+.. .+...++..|.+.-|++ .+|-+-|..+..+.|+|.+|.+.+. .--.|.|+
T Consensus 94 i~gq~Al~NyStsq~i~R~g----~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk----ngVQAmVE 165 (494)
T KOG1456|consen 94 IAGQQALFNYSTSQCIERPG----DESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK----NGVQAMVE 165 (494)
T ss_pred ccCchhhcccchhhhhccCC----CCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec----cceeeEEe
Confidence 78888888888544444432 33333455566665554 7889999999999999999999886 24579999
Q ss_pred eCCHHHHHHHHHHhCCceeccc--eeEEEeeeecCC------------------------Cc------------------
Q psy8956 178 FFSYKAAEKAIIEMNGRMIQHN--STFVSLAEIVPG------------------------KK------------------ 213 (333)
Q Consensus 178 f~~~~~a~~a~~~l~~~~~~~~--~i~v~~~~~~~~------------------------~~------------------ 213 (333)
|.+.+.|++|...|+|..|..- .++|+++.+..- ..
T Consensus 166 Fdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~ 245 (494)
T KOG1456|consen 166 FDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSR 245 (494)
T ss_pred echhHHHHHHHhhcccccccccceeEEEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhc
Confidence 9999999999999999886543 366666543221 00
Q ss_pred ------------cCCCC---------------CCCCCCCCccceEEEecCC-CCCCHHHHHHHhhccCCeeEEEeecC-C
Q psy8956 214 ------------VFPKV---------------KPPLLQPARKNKIFVANLP-SNINNSEFEELFARFGTITSSSLVSD-K 264 (333)
Q Consensus 214 ------------~~~~~---------------~~~~~~~~~~~~l~v~nl~-~~~~~~~l~~~f~~~g~v~~v~i~~~-~ 264 (333)
..+.. ..+.....++++++|.+|. ..++.+.|..+|..||.|.+|++++. .
T Consensus 246 ~G~h~~y~sg~~~~p~~~~P~r~~~~~~~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~ 325 (494)
T KOG1456|consen 246 GGGHSGYYSGDRHGPPHPPPSRYRDGYRDGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKP 325 (494)
T ss_pred CCCCCCCcccccCCCCCCCCCCCccccccCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeeccc
Confidence 00000 0001122346899999998 46888999999999999999999988 7
Q ss_pred cEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEecCCCCCCCCCCCCCCCCCCCCCCC
Q psy8956 265 HIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKPGVSITNPTKAPKKPAYIDE 322 (333)
Q Consensus 265 ~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~ 322 (333)
+.|.|++.+..+.++|+..||+..+.|.+|.|-++++.--.....-..+.++|+|.+.
T Consensus 326 gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ~~v~~~~pflLpDgSpSfKdy 383 (494)
T KOG1456|consen 326 GTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQNFVSPVQPFLLPDGSPSFKDY 383 (494)
T ss_pred ceeEEEcCcHHHHHHHHHHhccCccccceEEEeeccccccccCCceecCCCCcchhhc
Confidence 8999999999999999999999999999999999998776666555666688888764
No 34
>KOG0131|consensus
Probab=99.91 E-value=1.5e-23 Score=155.70 Aligned_cols=168 Identities=29% Similarity=0.447 Sum_probs=148.4
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeeccC
Q psy8956 35 NELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELK 113 (333)
Q Consensus 35 ~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~-~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~~~~~ 113 (333)
.+|||+||+..++++-|.++|-+.|+|.++++.++. +..+.||||++|.++|+|+-|++-|+...+.|+.|+|.-+.
T Consensus 10 ~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas-- 87 (203)
T KOG0131|consen 10 ATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS-- 87 (203)
T ss_pred ceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc--
Confidence 569999999999999999999999999999999999 77899999999999999999999999889999999999663
Q ss_pred CCCCCCCCCCCcccCCCCeEEEeCCCCCCCHHHHHHHhhccCceEE-EEEEeCC-CCCceeEEEEEeCCHHHHHHHHHHh
Q psy8956 114 PGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIE-VKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEM 191 (333)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~-~~~~~~~-~~~~~~~~~v~f~~~~~a~~a~~~l 191 (333)
.. ........++||+||.+.+++.-|...|+.||.+.. ..+++.+ +|.+++++|+.|.+.+.+..|+..+
T Consensus 88 --~~------~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ 159 (203)
T KOG0131|consen 88 --AH------QKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSM 159 (203)
T ss_pred --cc------cccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHh
Confidence 11 111123368999999999999999999999998765 3556655 6889999999999999999999999
Q ss_pred CCceeccceeEEEeeeecCCC
Q psy8956 192 NGRMIQHNSTFVSLAEIVPGK 212 (333)
Q Consensus 192 ~~~~~~~~~i~v~~~~~~~~~ 212 (333)
++..+.++.++|.+.......
T Consensus 160 ngq~l~nr~itv~ya~k~~~k 180 (203)
T KOG0131|consen 160 NGQYLCNRPITVSYAFKKDTK 180 (203)
T ss_pred ccchhcCCceEEEEEEecCCC
Confidence 999999999999998776553
No 35
>KOG0109|consensus
Probab=99.91 E-value=9.2e-24 Score=168.04 Aligned_cols=150 Identities=27% Similarity=0.492 Sum_probs=140.0
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhccCceEEEEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeccceeEEEeeeecC
Q psy8956 131 DKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVP 210 (333)
Q Consensus 131 ~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~ 210 (333)
.+|||+|||..+++.+|+.+|++||.|.+|.++++ ||||...+...+..|++.|++..+.|..|.|+.+..+.
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN-------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKs 75 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN-------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKS 75 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc-------cceEEeecccccHHHHhhcccceecceEEEEEeccccC
Confidence 47999999999999999999999999999999975 99999999999999999999999999999999986652
Q ss_pred CCccCCCCCCCCCCCCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecCCcEEEEEECCHHHHHHHHHHhCCCeeC
Q psy8956 211 GKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKHIGFIEFIMPKHATHAVSTMNGHVFK 290 (333)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~~~~~fV~f~~~~~A~~a~~~l~g~~l~ 290 (333)
..+++|+|+|+...++.++|+..|++||+|..+.|. ++++||.|+..++|..|+..|+|++|.
T Consensus 76 ---------------k~stkl~vgNis~tctn~ElRa~fe~ygpviecdiv--kdy~fvh~d~~eda~~air~l~~~~~~ 138 (346)
T KOG0109|consen 76 ---------------KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIV--KDYAFVHFDRAEDAVEAIRGLDNTEFQ 138 (346)
T ss_pred ---------------CCccccccCCCCccccCHHHhhhhcccCCceeeeee--cceeEEEEeeccchHHHHhcccccccc
Confidence 255789999999999999999999999999999998 569999999999999999999999999
Q ss_pred CeeEEEEecCCCCC
Q psy8956 291 SKPLKVTLSGTKPG 304 (333)
Q Consensus 291 g~~l~v~~a~~~~~ 304 (333)
|++++|.++..+..
T Consensus 139 gk~m~vq~stsrlr 152 (346)
T KOG0109|consen 139 GKRMHVQLSTSRLR 152 (346)
T ss_pred cceeeeeeeccccc
Confidence 99999999977643
No 36
>KOG0131|consensus
Probab=99.90 E-value=3.8e-23 Score=153.65 Aligned_cols=168 Identities=26% Similarity=0.424 Sum_probs=147.0
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHhhccCceEEEEEEeCC-CCCceeEEEEEeCCHHHHHHHHHHhCCceeccceeEEEe
Q psy8956 127 QYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL 205 (333)
Q Consensus 127 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~~~~~i~v~~ 205 (333)
.....+|||+||+..++++.|.++|-..|+|..+.++++. +...+||||++|.++++|..|++-++...+.|++|+|..
T Consensus 6 rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~k 85 (203)
T KOG0131|consen 6 RNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNK 85 (203)
T ss_pred cCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEe
Confidence 4456799999999999999999999999999999999987 667899999999999999999999999999999999999
Q ss_pred eeecCCCccCCCCCCCCCCCCccceEEEecCCCCCCHHHHHHHhhccCCeeEE-EeecC------CcEEEEEECCHHHHH
Q psy8956 206 AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSS-SLVSD------KHIGFIEFIMPKHAT 278 (333)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v-~i~~~------~~~~fV~f~~~~~A~ 278 (333)
+..... ....+..|||+||.+.+++..|.+.|+.||.+... .++++ ++++||.|.+.+.+.
T Consensus 86 as~~~~------------nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd 153 (203)
T KOG0131|consen 86 ASAHQK------------NLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASD 153 (203)
T ss_pred cccccc------------cccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHH
Confidence 862222 11233789999999999999999999999987552 44444 779999999999999
Q ss_pred HHHHHhCCCeeCCeeEEEEecCCCCCCC
Q psy8956 279 HAVSTMNGHVFKSKPLKVTLSGTKPGVS 306 (333)
Q Consensus 279 ~a~~~l~g~~l~g~~l~v~~a~~~~~~~ 306 (333)
+|+..|||..++.++++|+++..+..+.
T Consensus 154 ~ai~s~ngq~l~nr~itv~ya~k~~~kg 181 (203)
T KOG0131|consen 154 AAIGSMNGQYLCNRPITVSYAFKKDTKG 181 (203)
T ss_pred HHHHHhccchhcCCceEEEEEEecCCCc
Confidence 9999999999999999999998776554
No 37
>KOG0109|consensus
Probab=99.90 E-value=3.3e-23 Score=164.91 Aligned_cols=149 Identities=22% Similarity=0.383 Sum_probs=138.1
Q ss_pred eEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeeccCCC
Q psy8956 36 ELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPG 115 (333)
Q Consensus 36 ~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~~~~~~~ 115 (333)
+|||+|||..+++.+|+.+|++||.|.++.|++ .|+||..++...|..|+..|+|..|.|..|.|+-+..+
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvK-------NYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK-- 74 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVLECDIVK-------NYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK-- 74 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceEeeeeec-------ccceEEeecccccHHHHhhcccceecceEEEEEecccc--
Confidence 589999999999999999999999999999995 48999999999999999999999999999999977333
Q ss_pred CCCCCCCCCcccCCCCeEEEeCCCCCCCHHHHHHHhhccCceEEEEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhCCce
Q psy8956 116 QRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRM 195 (333)
Q Consensus 116 ~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~~~~ 195 (333)
...+.+|+|+|+.+..+.+|++..|++||+|.+|.++++ ++||.|...++|..|++.|++..
T Consensus 75 -----------sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd-------y~fvh~d~~eda~~air~l~~~~ 136 (346)
T KOG0109|consen 75 -----------SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD-------YAFVHFDRAEDAVEAIRGLDNTE 136 (346)
T ss_pred -----------CCCccccccCCCCccccCHHHhhhhcccCCceeeeeecc-------eeEEEEeeccchHHHHhcccccc
Confidence 235678999999999999999999999999999999975 99999999999999999999999
Q ss_pred eccceeEEEeeeecCC
Q psy8956 196 IQHNSTFVSLAEIVPG 211 (333)
Q Consensus 196 ~~~~~i~v~~~~~~~~ 211 (333)
+.|+.+.|+++.....
T Consensus 137 ~~gk~m~vq~stsrlr 152 (346)
T KOG0109|consen 137 FQGKRMHVQLSTSRLR 152 (346)
T ss_pred cccceeeeeeeccccc
Confidence 9999999999976654
No 38
>KOG0117|consensus
Probab=99.89 E-value=1.3e-21 Score=164.59 Aligned_cols=221 Identities=20% Similarity=0.294 Sum_probs=171.2
Q ss_pred EEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeeccCCCCCCCCCCCCcccCCCCeEEEeCCCCCCCHHHHHHHhhccCce
Q psy8956 78 AIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNI 157 (333)
Q Consensus 78 a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v 157 (333)
+.-...+.++|.++|..-.| -.|.|.-...+-.-.+ +.-........+-|||+.||.++.+++|.-+|+..|.|
T Consensus 37 ~~~~~~~~eaal~al~E~tg-----y~l~ve~gqrk~ggPp-P~weg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I 110 (506)
T KOG0117|consen 37 GVAGVQSEEAALKALLERTG-----YTLVVENGQRKYGGPP-PGWEGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKI 110 (506)
T ss_pred cccccccHHHHHHHHHHhcC-----ceEEEeccccccCCCC-CcccCCCCCCCceEEecCCCccccchhhHHHHHhccce
Confidence 33345567888888765433 3455542211111000 00112222456789999999999999999999999999
Q ss_pred EEEEEEeCC-CCCceeEEEEEeCCHHHHHHHHHHhCCcee-ccceeEEEeeeecCCCccCCCCCCCCCCCCccceEEEec
Q psy8956 158 IEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEMNGRMI-QHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVAN 235 (333)
Q Consensus 158 ~~~~~~~~~-~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~-~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~n 235 (333)
..++++.++ +|.++|||||.|.+.+.|++|++.||+..| .|+.|.|..+... ++|||+|
T Consensus 111 ~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Svan-------------------~RLFiG~ 171 (506)
T KOG0117|consen 111 YELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSVAN-------------------CRLFIGN 171 (506)
T ss_pred eeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEeeec-------------------ceeEecc
Confidence 999999996 899999999999999999999999999876 4677888887443 6799999
Q ss_pred CCCCCCHHHHHHHhhccCC-eeEEEeecC-------CcEEEEEECCHHHHHHHHHHhCCC--eeCCeeEEEEecCCCCCC
Q psy8956 236 LPSNINNSEFEELFARFGT-ITSSSLVSD-------KHIGFIEFIMPKHATHAVSTMNGH--VFKSKPLKVTLSGTKPGV 305 (333)
Q Consensus 236 l~~~~~~~~l~~~f~~~g~-v~~v~i~~~-------~~~~fV~f~~~~~A~~a~~~l~g~--~l~g~~l~v~~a~~~~~~ 305 (333)
||..+++++|.+.+++.+. |.+|.+..+ ||||||+|.++..|.-|...|-.. .+.|..+.|.||.++...
T Consensus 172 IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tVdWAep~~e~ 251 (506)
T KOG0117|consen 172 IPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITVDWAEPEEEP 251 (506)
T ss_pred CCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcceeeccCcccCC
Confidence 9999999999999999886 777777665 999999999999999998887654 467999999999998766
Q ss_pred CCCCCCCCCCCCCCCCCCCc
Q psy8956 306 SITNPTKAPKKPAYIDEVKN 325 (333)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~ 325 (333)
... .+...+..|..+++-
T Consensus 252 ded--~ms~VKvLYVRNL~~ 269 (506)
T KOG0117|consen 252 DED--TMSKVKVLYVRNLME 269 (506)
T ss_pred Chh--hhhheeeeeeeccch
Confidence 544 455567777776653
No 39
>KOG0146|consensus
Probab=99.89 E-value=1.8e-22 Score=158.76 Aligned_cols=178 Identities=30% Similarity=0.492 Sum_probs=152.4
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHhhccCceEEEEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhCCce-ecc--ceeEEE
Q psy8956 128 YKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRM-IQH--NSTFVS 204 (333)
Q Consensus 128 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~~~~-~~~--~~i~v~ 204 (333)
...++|||+.|...-.+++++.+|.+||.+.+|.+++.+.|.++|.+||.|.+..+|..|+..|||.. ..| ..+.|+
T Consensus 17 ~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 17 GDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred ccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 36789999999999999999999999999999999999999999999999999999999999999866 333 558888
Q ss_pred eeeecCC-------------------------------------------------------------------------
Q psy8956 205 LAEIVPG------------------------------------------------------------------------- 211 (333)
Q Consensus 205 ~~~~~~~------------------------------------------------------------------------- 211 (333)
+.+...+
T Consensus 97 ~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~A 176 (371)
T KOG0146|consen 97 FADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLAA 176 (371)
T ss_pred eccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhccccc
Confidence 8876655
Q ss_pred --------------------------------------------------------------------------------
Q psy8956 212 -------------------------------------------------------------------------------- 211 (333)
Q Consensus 212 -------------------------------------------------------------------------------- 211 (333)
T Consensus 177 ~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~Aa 256 (371)
T KOG0146|consen 177 APVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAAA 256 (371)
T ss_pred CCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhhh
Confidence
Q ss_pred --------CccC----CCCCCCCCCCCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC------CcEEEEEECC
Q psy8956 212 --------KKVF----PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIM 273 (333)
Q Consensus 212 --------~~~~----~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~------~~~~fV~f~~ 273 (333)
.... ..........+.++.|||..||..+.+.+|..+|-.||.|.+.++..| +.|+||.|++
T Consensus 257 ypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDN 336 (371)
T KOG0146|consen 257 YPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDN 336 (371)
T ss_pred cchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCC
Confidence 0000 000001234566899999999999999999999999999999888877 8899999999
Q ss_pred HHHHHHHHHHhCCCeeCCeeEEEEecCCCCCC
Q psy8956 274 PKHATHAVSTMNGHVFKSKPLKVTLSGTKPGV 305 (333)
Q Consensus 274 ~~~A~~a~~~l~g~~l~g~~l~v~~a~~~~~~ 305 (333)
+.+|..|+..|||+.|+-++|+|.+.++|...
T Consensus 337 p~SaQaAIqAMNGFQIGMKRLKVQLKRPkdan 368 (371)
T KOG0146|consen 337 PASAQAAIQAMNGFQIGMKRLKVQLKRPKDAN 368 (371)
T ss_pred chhHHHHHHHhcchhhhhhhhhhhhcCccccC
Confidence 99999999999999999999999999887543
No 40
>KOG1190|consensus
Probab=99.89 E-value=1.3e-20 Score=156.84 Aligned_cols=262 Identities=19% Similarity=0.272 Sum_probs=201.4
Q ss_pred ccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCC--eeeEEeee
Q psy8956 33 KENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGS--KPVIITFV 110 (333)
Q Consensus 33 ~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g--~~i~v~~~ 110 (333)
.--++.|.|+-..++.+-|.++|++||.|..|.-+-.. +.-.|+|+|.+.+.|..|...|+|..|.. .+++|.|+
T Consensus 149 ~vLr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~Kn---n~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~S 225 (492)
T KOG1190|consen 149 PVLRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTKN---NGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFS 225 (492)
T ss_pred eeEEEEeccceeeeEHHHHHHHHhhcceeEEEEEEecc---cchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehh
Confidence 44567899999999999999999999999876444332 23349999999999999999999998644 56666666
Q ss_pred ccCCCC----------CCC---CCC------------------------------------C-CcccC--CCCeEEEeCC
Q psy8956 111 ELKPGQ----------RSK---PVG------------------------------------P-EEKQY--KKDKVFVKNL 138 (333)
Q Consensus 111 ~~~~~~----------~~~---~~~------------------------------------~-~~~~~--~~~~l~v~~l 138 (333)
...... ... +.+ . ..... .+..|.|.|+
T Consensus 226 klt~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnl 305 (492)
T KOG1190|consen 226 KLTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNL 305 (492)
T ss_pred hcccceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecC
Confidence 322110 000 000 0 00001 1356778888
Q ss_pred CC-CCCHHHHHHHhhccCceEEEEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeccceeEEEeeeecCCCccC--
Q psy8956 139 VE-TVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVF-- 215 (333)
Q Consensus 139 ~~-~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~~~~~-- 215 (333)
.. .+|.+.|..+|.-||.|.+++++..+ +..|+|+|.+...|+.|+..|+|..+.|+.++|.++....-.-..
T Consensus 306 n~~~VT~d~LftlFgvYGdVqRVkil~nk----kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vqlp~eg 381 (492)
T KOG1190|consen 306 NEEAVTPDVLFTLFGVYGDVQRVKILYNK----KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQLPREG 381 (492)
T ss_pred chhccchhHHHHHHhhhcceEEEEeeecC----CcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCccccCCCCC
Confidence 54 88999999999999999999999974 478999999999999999999999999999999998754332111
Q ss_pred --------------------CCCCCCCCCCCccceEEEecCCCCCCHHHHHHHhhccCCe-eEEEeec-CCcEEEEEECC
Q psy8956 216 --------------------PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTI-TSSSLVS-DKHIGFIEFIM 273 (333)
Q Consensus 216 --------------------~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v-~~v~i~~-~~~~~fV~f~~ 273 (333)
+...+....-+++.+|.++|+|..+++++++..|..-|.. ...++.. ++.++++++.+
T Consensus 382 q~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~kd~kmal~q~~s 461 (492)
T KOG1190|consen 382 QEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQKDRKMALPQLES 461 (492)
T ss_pred CccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecCCCcceeecccCC
Confidence 1111122234577899999999999999999999987775 4455554 48899999999
Q ss_pred HHHHHHHHHHhCCCeeCCe-eEEEEecCC
Q psy8956 274 PKHATHAVSTMNGHVFKSK-PLKVTLSGT 301 (333)
Q Consensus 274 ~~~A~~a~~~l~g~~l~g~-~l~v~~a~~ 301 (333)
.++|..|+..++++.+++. .|+|+|++.
T Consensus 462 veeA~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 462 VEEAIQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred hhHhhhhccccccccCCCCceEEEEeecc
Confidence 9999999999999999864 899999875
No 41
>KOG0110|consensus
Probab=99.87 E-value=1.3e-21 Score=173.60 Aligned_cols=174 Identities=24% Similarity=0.428 Sum_probs=150.2
Q ss_pred cceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCCCCC----cccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEee
Q psy8956 34 ENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDE----SRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITF 109 (333)
Q Consensus 34 ~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~~~~----~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~ 109 (333)
..+|||.||++.+|.+++...|..+|.|.++.|.+...+. |+|||||+|.++++|+.|+..|+|+.+.|+.+.+++
T Consensus 515 ~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~ 594 (725)
T KOG0110|consen 515 ETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKI 594 (725)
T ss_pred chhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEe
Confidence 3349999999999999999999999999999888777553 669999999999999999999999999999999999
Q ss_pred eccCCCCCCCCCCCCcccCCCCeEEEeCCCCCCCHHHHHHHhhccCceEEEEEEeCC-CCCceeEEEEEeCCHHHHHHHH
Q psy8956 110 VELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAI 188 (333)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~~~~~v~f~~~~~a~~a~ 188 (333)
+...+..... ..........+|.|+|+|...+-.+++++|..||.+..++++... .+..+|||||+|.++.+|..|+
T Consensus 595 S~~k~~~~~g--K~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~ 672 (725)
T KOG0110|consen 595 SENKPASTVG--KKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAF 672 (725)
T ss_pred ccCccccccc--cccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHH
Confidence 9733322222 222223336799999999999999999999999999999999873 4557899999999999999999
Q ss_pred HHhCCceeccceeEEEeeeec
Q psy8956 189 IEMNGRMIQHNSTFVSLAEIV 209 (333)
Q Consensus 189 ~~l~~~~~~~~~i~v~~~~~~ 209 (333)
+.|..+.+.|+.+.++|+...
T Consensus 673 ~al~STHlyGRrLVLEwA~~d 693 (725)
T KOG0110|consen 673 DALGSTHLYGRRLVLEWAKSD 693 (725)
T ss_pred Hhhcccceechhhheehhccc
Confidence 999999999999999998654
No 42
>KOG4211|consensus
Probab=99.87 E-value=1.2e-19 Score=154.99 Aligned_cols=267 Identities=17% Similarity=0.248 Sum_probs=192.9
Q ss_pred cccccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEee
Q psy8956 30 KVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITF 109 (333)
Q Consensus 30 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~ 109 (333)
.....-.|.+++||+++|++||.+||+.|+ |.++.+.+ .+|+..|-|||+|.+.|++++|++. +...+..+.|.|-.
T Consensus 6 e~~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r-~~Gr~sGeA~Ve~~seedv~~Alkk-dR~~mg~RYIEVf~ 82 (510)
T KOG4211|consen 6 EGSTAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPR-RNGRPSGEAYVEFTSEEDVEKALKK-DRESMGHRYIEVFT 82 (510)
T ss_pred CCCcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEec-cCCCcCcceEEEeechHHHHHHHHh-hHHHhCCceEEEEc
Confidence 344556799999999999999999999997 67654443 3788999999999999999999964 77788999999986
Q ss_pred eccCCCCCCCCCCCCcccCCCCeEEEeCCCCCCCHHHHHHHhhccCceEE-EEEEeCCCCCceeEEEEEeCCHHHHHHHH
Q psy8956 110 VELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIE-VKIVRDENGKSKGFGFIQFFSYKAAEKAI 188 (333)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~-~~~~~~~~~~~~~~~~v~f~~~~~a~~a~ 188 (333)
+.....+................|.+++||..+++++|.++|+..-.|.. +.++.+..+++.+-|||+|.+.+.|+.|+
T Consensus 83 ~~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al 162 (510)
T KOG4211|consen 83 AGGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIAL 162 (510)
T ss_pred cCCccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHH
Confidence 64444433332222223356778999999999999999999998765555 66777778889999999999999999999
Q ss_pred HHhCCceeccceeEEEeeeecCCCccC-----------------------------------------------------
Q psy8956 189 IEMNGRMIQHNSTFVSLAEIVPGKKVF----------------------------------------------------- 215 (333)
Q Consensus 189 ~~l~~~~~~~~~i~v~~~~~~~~~~~~----------------------------------------------------- 215 (333)
.. |...+..+-|.|-.+.....+...
T Consensus 163 ~r-hre~iGhRYIEvF~Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~ 241 (510)
T KOG4211|consen 163 GR-HRENIGHRYIEVFRSSRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPS 241 (510)
T ss_pred HH-HHHhhccceEEeehhHHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCcc
Confidence 75 444455555555433211100000
Q ss_pred ---------------CCCCC---CCC---------CCCccceEEEecCCCCCCHHHHHHHhhccCCe-eEEEeecC---C
Q psy8956 216 ---------------PKVKP---PLL---------QPARKNKIFVANLPSNINNSEFEELFARFGTI-TSSSLVSD---K 264 (333)
Q Consensus 216 ---------------~~~~~---~~~---------~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v-~~v~i~~~---~ 264 (333)
..... +.. .......+.-.++|+..+..++..+|+..-.+ ..+.+-.+ .
T Consensus 242 ~~d~~~~gs~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~~v~i~ig~dGr~T 321 (510)
T KOG4211|consen 242 LQDYGNFGSYGGGRDPNYPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPYRVHIEIGPDGRAT 321 (510)
T ss_pred ccccccccccccccccccCCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCceeEEEEeCCCCccC
Confidence 00000 000 00012567788999999999999999986665 23344444 7
Q ss_pred cEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEecCC
Q psy8956 265 HIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGT 301 (333)
Q Consensus 265 ~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~a~~ 301 (333)
+-|.|+|.+.++|..||. -++..+..+-+.+.+-..
T Consensus 322 GEAdveF~t~edav~Ams-kd~anm~hrYVElFln~~ 357 (510)
T KOG4211|consen 322 GEADVEFATGEDAVGAMG-KDGANMGHRYVELFLNGA 357 (510)
T ss_pred CcceeecccchhhHhhhc-cCCcccCcceeeecccCC
Confidence 889999999999999988 567778888877766533
No 43
>KOG0120|consensus
Probab=99.85 E-value=1.8e-20 Score=164.11 Aligned_cols=265 Identities=19% Similarity=0.327 Sum_probs=205.6
Q ss_pred ccccceEEEeCCCCCCCHHHHHHHHhcC-----------C-CeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCC
Q psy8956 31 VYKENELHVNNLEPSVDNQALINEFKKF-----------G-TLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98 (333)
Q Consensus 31 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~-----------g-~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~ 98 (333)
....++++|+++|+.++++....+|..- | .+..+.+.. .+++||++|.+.++|..|+ .+++.
T Consensus 172 t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~-----~~nfa~ie~~s~~~at~~~-~~~~~ 245 (500)
T KOG0120|consen 172 TRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNL-----EKNFAFIEFRSISEATEAM-ALDGI 245 (500)
T ss_pred hhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecc-----cccceeEEecCCCchhhhh-cccch
Confidence 3567889999999999999999998653 3 466666655 4789999999999999998 67999
Q ss_pred ccCCeeeEEeeec-cCCCC----C-------CCCCCCCcccCCCCeEEEeCCCCCCCHHHHHHHhhccCceEEEEEEeCC
Q psy8956 99 LIGSKPVIITFVE-LKPGQ----R-------SKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE 166 (333)
Q Consensus 99 ~~~g~~i~v~~~~-~~~~~----~-------~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~ 166 (333)
.+.|..+++.-.. ..+.. . ..............++++++||...++.++.+++..+|.+....+..+.
T Consensus 246 ~f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~ 325 (500)
T KOG0120|consen 246 IFEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDS 325 (500)
T ss_pred hhCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeeccc
Confidence 9999888877211 00000 0 0011122233445689999999999999999999999999998888877
Q ss_pred -CCCceeEEEEEeCCHHHHHHHHHHhCCceeccceeEEEeeeecCCCccCCCC---------CCC--CCCCCccceEEEe
Q psy8956 167 -NGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKV---------KPP--LLQPARKNKIFVA 234 (333)
Q Consensus 167 -~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~~~~~~~~---------~~~--~~~~~~~~~l~v~ 234 (333)
+|.+++|||.+|.+..-...|+..|+|..+.+..+.|+.+-........... ... .....++.+|++.
T Consensus 326 ~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~ 405 (500)
T KOG0120|consen 326 ATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLT 405 (500)
T ss_pred ccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccchhccccCCccccccccchhhhcccCCCcchhhhhh
Confidence 5899999999999999999999999999999999999987655443222111 111 3345567778887
Q ss_pred cCC--CC-CCH-------HHHHHHhhccCCeeEEEeecC---------CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEE
Q psy8956 235 NLP--SN-INN-------SEFEELFARFGTITSSSLVSD---------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLK 295 (333)
Q Consensus 235 nl~--~~-~~~-------~~l~~~f~~~g~v~~v~i~~~---------~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~ 295 (333)
|+- .. ..+ ++++..+.+||.|..|.+... .|-.||+|.+.+++++|++.|+|+.|.||.+.
T Consensus 406 n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVv 485 (500)
T KOG0120|consen 406 NVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVV 485 (500)
T ss_pred hcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEE
Confidence 773 11 122 667888889999999999877 56789999999999999999999999999999
Q ss_pred EEecCC
Q psy8956 296 VTLSGT 301 (333)
Q Consensus 296 v~~a~~ 301 (333)
.+|-..
T Consensus 486 tsYyde 491 (500)
T KOG0120|consen 486 ASYYDE 491 (500)
T ss_pred EEecCH
Confidence 987644
No 44
>KOG0124|consensus
Probab=99.85 E-value=2.7e-21 Score=158.68 Aligned_cols=174 Identities=25% Similarity=0.421 Sum_probs=148.9
Q ss_pred CCeEEEeCCCCCCCHHHHHHHhhccCceEEEEEEeCC-CCCceeEEEEEeCCHHHHHHHHHHhCCceeccceeEEEeeee
Q psy8956 130 KDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEI 208 (333)
Q Consensus 130 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~ 208 (333)
.+.+||+.+.+...++.|+..|.+||+|.++.+.+++ +++.+||+||+|.-+|.|+.|++.+|+..++|+.++|....+
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsN 192 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 192 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCC
Confidence 4579999999999999999999999999999999998 899999999999999999999999999999999999986644
Q ss_pred cCCCccCCCCCCCCCCCCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC------CcEEEEEECCHHHHHHHHH
Q psy8956 209 VPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVS 282 (333)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~------~~~~fV~f~~~~~A~~a~~ 282 (333)
......... .-......-.++||..+..+.+++||+.+|+.||.|..|.+-+. +||+|++|.+..+...|+.
T Consensus 193 mpQAQpiID--~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAia 270 (544)
T KOG0124|consen 193 MPQAQPIID--MVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIA 270 (544)
T ss_pred CcccchHHH--HHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhh
Confidence 333110000 00011123468999999999999999999999999999999887 8999999999999999999
Q ss_pred HhCCCeeCCeeEEEEecCCCCCC
Q psy8956 283 TMNGHVFKSKPLKVTLSGTKPGV 305 (333)
Q Consensus 283 ~l~g~~l~g~~l~v~~a~~~~~~ 305 (333)
.||=+.++|..|+|-.+-..+..
T Consensus 271 sMNlFDLGGQyLRVGk~vTPP~a 293 (544)
T KOG0124|consen 271 SMNLFDLGGQYLRVGKCVTPPDA 293 (544)
T ss_pred hcchhhcccceEecccccCCCch
Confidence 99999999999999877665443
No 45
>KOG4206|consensus
Probab=99.82 E-value=2.1e-18 Score=133.82 Aligned_cols=207 Identities=20% Similarity=0.364 Sum_probs=150.2
Q ss_pred cccceEEEeCCCCCCCHHHHHH----HHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEE
Q psy8956 32 YKENELHVNNLEPSVDNQALIN----EFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVII 107 (333)
Q Consensus 32 ~~~~~l~V~nLp~~~t~~~l~~----~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v 107 (333)
.++.+|||.||+..+..++|++ +|++||.|.+|..++ +...+|.|||.|.+.+.|..|+..|+|..+.|+.+.|
T Consensus 7 ~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k--t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mri 84 (221)
T KOG4206|consen 7 NPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK--TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRI 84 (221)
T ss_pred CCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC--CCCccCceEEEecChhHHHHHHHHhcCCcccCchhhe
Confidence 3445899999999999999988 999999999886665 5678999999999999999999999999999999999
Q ss_pred eeeccCCCCCCCCCCCCccc-CCCCeEEEeCCCCCCCHHHHHHHhhccCceEEEEEEeCCCCCceeEEEEEeCCHHHHHH
Q psy8956 108 TFVELKPGQRSKPVGPEEKQ-YKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEK 186 (333)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~-~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~v~f~~~~~a~~ 186 (333)
+|+..+.....+....-... ...+.-.+.+++ ...
T Consensus 85 qyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~------------------------~~~-------------------- 120 (221)
T KOG4206|consen 85 QYAKSDSDIIAQAPGTFVEKEKKINGEILARIK------------------------QPL-------------------- 120 (221)
T ss_pred ecccCccchhhccCceeccccCccccccccccC------------------------Ccc--------------------
Confidence 99965555443322110000 000011111111 000
Q ss_pred HHHHhCCceeccceeEEEeeeecCCCccCCCCCCCCCCCCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC-Cc
Q psy8956 187 AIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-KH 265 (333)
Q Consensus 187 a~~~l~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~-~~ 265 (333)
..++.... +.. ...+... .....++..++++.|+|..++.+.+..+|++|...+.++++.. ++
T Consensus 121 ---~~ng~~~~-----~~~-------~~~p~p~-~~~~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~~~ 184 (221)
T KOG4206|consen 121 ---DTNGHFYN-----MNR-------MNLPPPF-LAQMAPPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPRSG 184 (221)
T ss_pred ---cccccccc-----ccc-------ccCCCCc-cccCCCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCCCc
Confidence 00111000 000 0000000 1334567789999999999999999999999999999999886 88
Q ss_pred EEEEEECCHHHHHHHHHHhCCCeeC-CeeEEEEecC
Q psy8956 266 IGFIEFIMPKHATHAVSTMNGHVFK-SKPLKVTLSG 300 (333)
Q Consensus 266 ~~fV~f~~~~~A~~a~~~l~g~~l~-g~~l~v~~a~ 300 (333)
.|||+|.+...|..|+..+.|..+- ...+.|.+|+
T Consensus 185 iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 185 IAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred eeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 9999999999999999999999886 8888888875
No 46
>KOG0146|consensus
Probab=99.82 E-value=1.4e-19 Score=142.70 Aligned_cols=178 Identities=25% Similarity=0.420 Sum_probs=150.3
Q ss_pred ccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCc-cCC--eeeEEee
Q psy8956 33 KENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHL-IGS--KPVIITF 109 (333)
Q Consensus 33 ~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~-~~g--~~i~v~~ 109 (333)
+.++|||+.|.+.-.|+|++.+|..||.++++.+.+...|.++|.|||+|.+-.+|..||..|+|.. +.| ..+.|+|
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ 97 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKF 97 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEe
Confidence 3467999999999999999999999999999999999999999999999999999999999999986 666 5677777
Q ss_pred eccCCCCC------------------------------------------------------------------------
Q psy8956 110 VELKPGQR------------------------------------------------------------------------ 117 (333)
Q Consensus 110 ~~~~~~~~------------------------------------------------------------------------ 117 (333)
+......-
T Consensus 98 ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~A~ 177 (371)
T KOG0146|consen 98 ADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLAAA 177 (371)
T ss_pred ccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhcccccC
Confidence 74322211
Q ss_pred ---------CC---------------------------------------------------------------------
Q psy8956 118 ---------SK--------------------------------------------------------------------- 119 (333)
Q Consensus 118 ---------~~--------------------------------------------------------------------- 119 (333)
..
T Consensus 178 Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~Aay 257 (371)
T KOG0146|consen 178 PVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAAAY 257 (371)
T ss_pred CcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhhhc
Confidence 00
Q ss_pred -----------C------CCCCcccCCCCeEEEeCCCCCCCHHHHHHHhhccCceEEEEEEeCC-CCCceeEEEEEeCCH
Q psy8956 120 -----------P------VGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSY 181 (333)
Q Consensus 120 -----------~------~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~~~~~v~f~~~ 181 (333)
+ ........+.++|||..||....+.||.++|-+||.|.+.++.-++ +..+++|+||-|.+.
T Consensus 258 paays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp 337 (371)
T KOG0146|consen 258 PAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNP 337 (371)
T ss_pred chhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCc
Confidence 0 0000233456679999999999999999999999999999888887 788999999999999
Q ss_pred HHHHHHHHHhCCceeccceeEEEeeeecC
Q psy8956 182 KAAEKAIIEMNGRMIQHNSTFVSLAEIVP 210 (333)
Q Consensus 182 ~~a~~a~~~l~~~~~~~~~i~v~~~~~~~ 210 (333)
.+++.|+..+||..|+=+.++|++-.++.
T Consensus 338 ~SaQaAIqAMNGFQIGMKRLKVQLKRPkd 366 (371)
T KOG0146|consen 338 ASAQAAIQAMNGFQIGMKRLKVQLKRPKD 366 (371)
T ss_pred hhHHHHHHHhcchhhhhhhhhhhhcCccc
Confidence 99999999999999999999888765543
No 47
>KOG1456|consensus
Probab=99.82 E-value=6.1e-17 Score=133.63 Aligned_cols=264 Identities=18% Similarity=0.196 Sum_probs=197.4
Q ss_pred ccccceEEEeCCC--CCCCHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCcc--CCeeeE
Q psy8956 31 VYKENELHVNNLE--PSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLI--GSKPVI 106 (333)
Q Consensus 31 ~~~~~~l~V~nLp--~~~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~--~g~~i~ 106 (333)
...+..|.++=|- ..+|.+-|+.++...|.|.+|-|++. + --.|.|||.+.+.|++|...|||..| ...+++
T Consensus 117 ~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk-n---gVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLK 192 (494)
T KOG1456|consen 117 ATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK-N---GVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLK 192 (494)
T ss_pred CCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec-c---ceeeEEeechhHHHHHHHhhcccccccccceeEE
Confidence 3455556555444 46799999999999999999988876 3 34699999999999999999999975 458899
Q ss_pred EeeeccCCCCCCC------------------------------------------------------CC-----------
Q psy8956 107 ITFVELKPGQRSK------------------------------------------------------PV----------- 121 (333)
Q Consensus 107 v~~~~~~~~~~~~------------------------------------------------------~~----------- 121 (333)
|+|+.+....-.+ +.
T Consensus 193 IeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~~~~~ 272 (494)
T KOG1456|consen 193 IEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRYRDGY 272 (494)
T ss_pred EEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCCcccc
Confidence 9988433221000 00
Q ss_pred ------CCCcccCCCCeEEEeCCCC-CCCHHHHHHHhhccCceEEEEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhCCc
Q psy8956 122 ------GPEEKQYKKDKVFVKNLVE-TVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGR 194 (333)
Q Consensus 122 ------~~~~~~~~~~~l~v~~l~~-~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~~~ 194 (333)
.+.........++|.+|.. .++-+.|.++|-.||.|.++++++.. .|.|.|++.+....++|+..|++.
T Consensus 273 ~~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk----~gtamVemgd~~aver~v~hLnn~ 348 (494)
T KOG1456|consen 273 RDGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK----PGTAMVEMGDAYAVERAVTHLNNI 348 (494)
T ss_pred ccCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc----cceeEEEcCcHHHHHHHHHHhccC
Confidence 0001112334588999977 56778899999999999999999975 678999999999999999999999
Q ss_pred eeccceeEEEeeeecCCCccC------------------------CCCCCCCCCCCccceEEEecCCCCCCHHHHHHHhh
Q psy8956 195 MIQHNSTFVSLAEIVPGKKVF------------------------PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFA 250 (333)
Q Consensus 195 ~~~~~~i~v~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~ 250 (333)
.+.|..+.+..+...--.... +....-....+++++|..-|.|..++++.|..+|.
T Consensus 349 ~lfG~kl~v~~SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~n 428 (494)
T KOG1456|consen 349 PLFGGKLNVCVSKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICN 428 (494)
T ss_pred ccccceEEEeeccccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhh
Confidence 999999999887643221110 00011123455789999999999999999999997
Q ss_pred ccCC-eeEEEeecC----CcEEEEEECCHHHHHHHHHHhCCCeeCCe------eEEEEecCCC
Q psy8956 251 RFGT-ITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSK------PLKVTLSGTK 302 (333)
Q Consensus 251 ~~g~-v~~v~i~~~----~~~~fV~f~~~~~A~~a~~~l~g~~l~g~------~l~v~~a~~~ 302 (333)
..+. -.++++... ...+.++|++.++|..|+..+|...+.+. .|++-|++.+
T Consensus 429 ek~v~~~svkvFp~kserSssGllEfe~~s~Aveal~~~NH~pi~~p~gs~PfilKlcfsts~ 491 (494)
T KOG1456|consen 429 EKDVPPTSVKVFPLKSERSSSGLLEFENKSDAVEALMKLNHYPIEGPNGSFPFILKLCFSTSK 491 (494)
T ss_pred hcCCCcceEEeecccccccccceeeeehHHHHHHHHHHhccccccCCCCCCCeeeeeeecccc
Confidence 6554 456666655 34689999999999999999999999762 3555565543
No 48
>KOG4205|consensus
Probab=99.77 E-value=3.7e-18 Score=142.83 Aligned_cols=174 Identities=24% Similarity=0.377 Sum_probs=145.9
Q ss_pred ccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeec
Q psy8956 33 KENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVE 111 (333)
Q Consensus 33 ~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~-~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~~~ 111 (333)
+..+|+|++|+++++++.|+++|.+||.|.++.+++++ +++++||+||+|.+++...+++.. ....+.|+.|.+..+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccCCccccceecc
Confidence 56789999999999999999999999999999999999 899999999999999999999854 5566899999888653
Q ss_pred cCCCCCCCCCCCCcccCCCCeEEEeCCCCCCCHHHHHHHhhccCceEEEEEEeCC-CCCceeEEEEEeCCHHHHHHHHHH
Q psy8956 112 LKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIE 190 (333)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~~~~~v~f~~~~~a~~a~~~ 190 (333)
+...... ........+++|++||.+++++++++.|+++|.|..+.++.+. +.+.++|+||.|.+++.+.+++.
T Consensus 84 ~r~~~~~-----~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~- 157 (311)
T KOG4205|consen 84 SREDQTK-----VGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL- 157 (311)
T ss_pred Ccccccc-----cccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-
Confidence 2221111 1111156689999999999999999999999988888777776 67889999999999999999976
Q ss_pred hCCceeccceeEEEeeeecCCCc
Q psy8956 191 MNGRMIQHNSTFVSLAEIVPGKK 213 (333)
Q Consensus 191 l~~~~~~~~~i~v~~~~~~~~~~ 213 (333)
..-..+.++.+.|..+.++....
T Consensus 158 ~~f~~~~gk~vevkrA~pk~~~~ 180 (311)
T KOG4205|consen 158 QKFHDFNGKKVEVKRAIPKEVMQ 180 (311)
T ss_pred cceeeecCceeeEeeccchhhcc
Confidence 46677999999999987766633
No 49
>KOG4205|consensus
Probab=99.76 E-value=3.2e-18 Score=143.21 Aligned_cols=173 Identities=24% Similarity=0.432 Sum_probs=149.3
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHhhccCceEEEEEEeCC-CCCceeEEEEEeCCHHHHHHHHHHhCCceeccceeEEEeee
Q psy8956 129 KKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207 (333)
Q Consensus 129 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~ 207 (333)
...+++|++|++.++++.|+++|..||.|..|.+.+++ ++++++++||+|.+.+....++.. ....+.++.+.+..+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccCCccccceecc
Confidence 57899999999999999999999999999999999987 799999999999999999988763 4556888999888887
Q ss_pred ecCCCccCCCCCCCCCCCCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC------CcEEEEEECCHHHHHHHH
Q psy8956 208 IVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAV 281 (333)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~------~~~~fV~f~~~~~A~~a~ 281 (333)
.......... ......++|+++|..+++++++++|++||.|..+.++.+ ++|+||.|.+.+++.+++
T Consensus 84 ~r~~~~~~~~-------~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~ 156 (311)
T KOG4205|consen 84 SREDQTKVGR-------HLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVT 156 (311)
T ss_pred Cccccccccc-------ccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceec
Confidence 6665332221 125678999999999999999999999999999988877 889999999998888887
Q ss_pred HHhCCCeeCCeeEEEEecCCCCCCCCCCC
Q psy8956 282 STMNGHVFKSKPLKVTLSGTKPGVSITNP 310 (333)
Q Consensus 282 ~~l~g~~l~g~~l~v~~a~~~~~~~~~~~ 310 (333)
. ..-+.|+|+.+.|..|.++.......+
T Consensus 157 ~-~~f~~~~gk~vevkrA~pk~~~~~~~~ 184 (311)
T KOG4205|consen 157 L-QKFHDFNGKKVEVKRAIPKEVMQSTKS 184 (311)
T ss_pred c-cceeeecCceeeEeeccchhhcccccc
Confidence 7 788999999999999999877665543
No 50
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.75 E-value=2.6e-17 Score=124.41 Aligned_cols=84 Identities=25% Similarity=0.455 Sum_probs=78.0
Q ss_pred ccccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEee
Q psy8956 31 VYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITF 109 (333)
Q Consensus 31 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~-~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~ 109 (333)
....++|||+|||+.+|+++|+++|++||.|.++.+..+. ++.++|||||+|.+.++|+.|++.|++..+.|+.|.|.+
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 3566789999999999999999999999999999999998 889999999999999999999999999999999999998
Q ss_pred eccCC
Q psy8956 110 VELKP 114 (333)
Q Consensus 110 ~~~~~ 114 (333)
+..++
T Consensus 111 a~~~~ 115 (144)
T PLN03134 111 ANDRP 115 (144)
T ss_pred CCcCC
Confidence 85433
No 51
>KOG0147|consensus
Probab=99.75 E-value=2.3e-18 Score=149.16 Aligned_cols=177 Identities=23% Similarity=0.408 Sum_probs=148.4
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHhhccCceEEEEEEeCC-CCCceeEEEEEeCCHHHHHHHHHHhCCceeccceeEEEeee
Q psy8956 129 KKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207 (333)
Q Consensus 129 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~ 207 (333)
..+++|+..+....+.-+|.++|+..|.|..+.++.+. +++++|.|||+|.+.+....|+ .|.|..+.|.+|.|+...
T Consensus 178 d~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~vq~sE 256 (549)
T KOG0147|consen 178 DQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIVQLSE 256 (549)
T ss_pred hHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeEecccH
Confidence 45678888888999999999999999999999999887 7889999999999999999998 589999999999999876
Q ss_pred ecCCCccCCCCCCC-CCCCCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC------CcEEEEEECCHHHHHHH
Q psy8956 208 IVPGKKVFPKVKPP-LLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHA 280 (333)
Q Consensus 208 ~~~~~~~~~~~~~~-~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~------~~~~fV~f~~~~~A~~a 280 (333)
.............. .....+...|+|+||..++++++|+..|+.||.|..|.+..+ +||+||+|.+.++|.+|
T Consensus 257 aeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a 336 (549)
T KOG0147|consen 257 AEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKA 336 (549)
T ss_pred HHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHH
Confidence 54443111111111 112233344999999999999999999999999999998887 88999999999999999
Q ss_pred HHHhCCCeeCCeeEEEEecCCCCCCC
Q psy8956 281 VSTMNGHVFKSKPLKVTLSGTKPGVS 306 (333)
Q Consensus 281 ~~~l~g~~l~g~~l~v~~a~~~~~~~ 306 (333)
++.|||..|.|+.|+|.....+....
T Consensus 337 ~e~lngfelAGr~ikV~~v~~r~~~~ 362 (549)
T KOG0147|consen 337 LEQLNGFELAGRLIKVSVVTERVDTK 362 (549)
T ss_pred HHHhccceecCceEEEEEeeeecccc
Confidence 99999999999999998887655443
No 52
>KOG1457|consensus
Probab=99.72 E-value=6.2e-17 Score=124.53 Aligned_cols=239 Identities=14% Similarity=0.135 Sum_probs=139.3
Q ss_pred cCcccccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCC--CCCcccEEEEEeCCHHHHHHHHHHhcCCcc---CC
Q psy8956 28 NNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK--NDESRGFAIIVFNTPAEAKKARVEMNGHLI---GS 102 (333)
Q Consensus 28 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~--~~~~~g~a~v~f~~~e~A~~al~~l~~~~~---~g 102 (333)
...+..-|+|||.|||.++...+|+.+|..|-..+...+.... ....+.+||+.|.+..+|.+|++.|||..+ .+
T Consensus 28 ~~~~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~ 107 (284)
T KOG1457|consen 28 ADEPGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETG 107 (284)
T ss_pred cccccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccC
Confidence 3344568999999999999999999999998766666555543 223568999999999999999999999987 56
Q ss_pred eeeEEeeeccCCCCCCCCCCCCcccCCCCeEEEeCCCCCCCHHHHHHHhhccCceEEEEEEeCCCCCceeEEEEEeCCHH
Q psy8956 103 KPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYK 182 (333)
Q Consensus 103 ~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~v~f~~~~ 182 (333)
..+.++++..+...........+.......+...+.+......+ ...-..+. ...+.-..... .-+.- ++...+
T Consensus 108 stLhiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~-qhd~~l~~-p~~l~~~~~a~-al~~~---~~t~~~ 181 (284)
T KOG1457|consen 108 STLHIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADD-QHDEGLSD-PDELQEPGNAD-ALKEN---DTTKSE 181 (284)
T ss_pred ceeEeeehhcCcccccCCCCCCCCCCccccccccChhhcccchh-hccccccC-ccccCCccccc-cCCCc---cccchh
Confidence 89999988655544333222222111111111111111111110 00000000 00000000000 00000 000000
Q ss_pred HHHHHHHHhCCceeccceeEEEeeeecCCCccCCCCCCCCCCCCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeec
Q psy8956 183 AAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262 (333)
Q Consensus 183 ~a~~a~~~l~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~ 262 (333)
. .-|-.... ..................-+.+|||.||...+++++|+.+|+.|-....++|..
T Consensus 182 ~-l~a~~~~~----------------P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~ 244 (284)
T KOG1457|consen 182 A-LSAPDSKA----------------PSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRA 244 (284)
T ss_pred h-hhhhhhcC----------------CcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEec
Confidence 0 00000000 000000000000111223467999999999999999999999999988877766
Q ss_pred C--CcEEEEEECCHHHHHHHHHHhCCCee
Q psy8956 263 D--KHIGFIEFIMPKHATHAVSTMNGHVF 289 (333)
Q Consensus 263 ~--~~~~fV~f~~~~~A~~a~~~l~g~~l 289 (333)
. -..||++|++.+.|..||..|.|..|
T Consensus 245 ~~g~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 245 RGGMPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred CCCcceEeecHHHHHHHHHHHHHhhccee
Confidence 5 45789999999999999999999877
No 53
>KOG0105|consensus
Probab=99.72 E-value=3.1e-16 Score=117.15 Aligned_cols=158 Identities=17% Similarity=0.319 Sum_probs=127.4
Q ss_pred ccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeecc
Q psy8956 33 KENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVEL 112 (333)
Q Consensus 33 ~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~~~~ 112 (333)
..++|||+|||.++-+.+|.++|-+||.|..|.+....- ..+||||+|+++-+|..|+.--+|..+.|..|.|++...
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g--~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprg 82 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPG--PPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRG 82 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCC--CCCeeEEEecCccchhhhhhcccccccCcceEEEEeccC
Confidence 457899999999999999999999999999886654332 467999999999999999999999999999999998743
Q ss_pred CCCCCCCC---------------CCCCcccCCCCeEEEeCCCCCCCHHHHHHHhhccCceEEEEEEeCCCCCceeEEEEE
Q psy8956 113 KPGQRSKP---------------VGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQ 177 (333)
Q Consensus 113 ~~~~~~~~---------------~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~v~ 177 (333)
........ ..-.+..-....+.|.+||+.-+=++|+.++...|.|-...+.++ +.+.|+
T Consensus 83 gr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD------g~GvV~ 156 (241)
T KOG0105|consen 83 GRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD------GVGVVE 156 (241)
T ss_pred CCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc------cceeee
Confidence 32111000 001122334557999999999999999999999999987777765 689999
Q ss_pred eCCHHHHHHHHHHhCCceecc
Q psy8956 178 FFSYKAAEKAIIEMNGRMIQH 198 (333)
Q Consensus 178 f~~~~~a~~a~~~l~~~~~~~ 198 (333)
|...++.+.|++.|....+..
T Consensus 157 ~~r~eDMkYAvr~ld~~~~~s 177 (241)
T KOG0105|consen 157 YLRKEDMKYAVRKLDDQKFRS 177 (241)
T ss_pred eeehhhHHHHHHhhccccccC
Confidence 999999999999988766543
No 54
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.68 E-value=7.6e-16 Score=116.42 Aligned_cols=82 Identities=23% Similarity=0.513 Sum_probs=75.1
Q ss_pred CCCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC------CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEE
Q psy8956 224 QPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVT 297 (333)
Q Consensus 224 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~------~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~ 297 (333)
....+++|||+|||..+++++|+++|++||.|..+.++.+ ++||||+|.+.++|.+|++.||+..|+|++|+|.
T Consensus 30 ~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~ 109 (144)
T PLN03134 30 LRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVN 109 (144)
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 3445689999999999999999999999999999999865 7899999999999999999999999999999999
Q ss_pred ecCCCCCC
Q psy8956 298 LSGTKPGV 305 (333)
Q Consensus 298 ~a~~~~~~ 305 (333)
++..++..
T Consensus 110 ~a~~~~~~ 117 (144)
T PLN03134 110 PANDRPSA 117 (144)
T ss_pred eCCcCCCC
Confidence 99876543
No 55
>KOG1548|consensus
Probab=99.68 E-value=2.9e-15 Score=122.75 Aligned_cols=179 Identities=18% Similarity=0.269 Sum_probs=143.3
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHhhccCceE--------EEEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeccc
Q psy8956 128 YKKDKVFVKNLVETVDEEELKSHFIKFGNII--------EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHN 199 (333)
Q Consensus 128 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~--------~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~~~~ 199 (333)
..+..|||.|||.++|-+++.++|+.+|.|. .|++..+..|..+|-|++.|-..+++..|+.-|++..+.|+
T Consensus 132 ~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~ 211 (382)
T KOG1548|consen 132 KVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGK 211 (382)
T ss_pred ccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCc
Confidence 3455799999999999999999999999764 36777888899999999999999999999999999999999
Q ss_pred eeEEEeeeecCCCccCCCC-------------------------CCCCCCCCccceEEEecCCC--C--CC-------HH
Q psy8956 200 STFVSLAEIVPGKKVFPKV-------------------------KPPLLQPARKNKIFVANLPS--N--IN-------NS 243 (333)
Q Consensus 200 ~i~v~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~l~v~nl~~--~--~~-------~~ 243 (333)
.++|+.+.-.......... ..........++|.+.|+=. . .+ .+
T Consensus 212 ~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlke 291 (382)
T KOG1548|consen 212 KLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKE 291 (382)
T ss_pred EEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHHH
Confidence 9999988654331110000 01112223457899999832 1 22 36
Q ss_pred HHHHHhhccCCeeEEEeecC--CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEecCCCCCCC
Q psy8956 244 EFEELFARFGTITSSSLVSD--KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKPGVS 306 (333)
Q Consensus 244 ~l~~~f~~~g~v~~v~i~~~--~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~a~~~~~~~ 306 (333)
+|++.+++||.|.+|.+... .|.+-|.|.+.++|..|++.|+|++|+||.|..+....+....
T Consensus 292 dl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~t~~~ 356 (382)
T KOG1548|consen 292 DLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGKTKFQ 356 (382)
T ss_pred HHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCcceee
Confidence 78888999999999998854 7889999999999999999999999999999999887765443
No 56
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.68 E-value=3e-16 Score=104.51 Aligned_cols=70 Identities=34% Similarity=0.634 Sum_probs=67.1
Q ss_pred EEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeE
Q psy8956 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVI 106 (333)
Q Consensus 37 l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~ 106 (333)
|||+|||+.+|+++|+++|++||.|..+.+..+.++..+|+|||+|.+.++|.+|++.|+|..+.|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 7999999999999999999999999999999988888999999999999999999999999999999874
No 57
>KOG0125|consensus
Probab=99.65 E-value=6.9e-16 Score=125.47 Aligned_cols=88 Identities=17% Similarity=0.404 Sum_probs=77.9
Q ss_pred CCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC----CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEecC
Q psy8956 225 PARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSG 300 (333)
Q Consensus 225 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~----~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~a~ 300 (333)
....++|+|+|||+.+.+-||+.+|++||.|.+|.|+.. +||+||+|++.+||.+|.+.|||..+.||+|+|+.|+
T Consensus 93 ~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~AT 172 (376)
T KOG0125|consen 93 KDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNAT 172 (376)
T ss_pred CCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccc
Confidence 334578999999999999999999999999999998876 8999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCC
Q psy8956 301 TKPGVSITNPTK 312 (333)
Q Consensus 301 ~~~~~~~~~~~~ 312 (333)
.+-......+.+
T Consensus 173 arV~n~K~~v~p 184 (376)
T KOG0125|consen 173 ARVHNKKKKVLP 184 (376)
T ss_pred hhhccCCcccCC
Confidence 885444433333
No 58
>KOG1365|consensus
Probab=99.64 E-value=4e-15 Score=123.42 Aligned_cols=272 Identities=16% Similarity=0.163 Sum_probs=188.2
Q ss_pred cCcccccceEEEeCCCCCCCHHHHHHHHhcCCCee-EEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeE
Q psy8956 28 NNKVYKENELHVNNLEPSVDNQALINEFKKFGTLR-DVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVI 106 (333)
Q Consensus 28 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~-~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~ 106 (333)
.+....+..|..++||+..++.+|..+|.-..-.. .+-++.+..|+..|.|.|.|.++|.-.-|+++ +...+.++.|.
T Consensus 54 ~~~~~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkR-hkhh~g~ryie 132 (508)
T KOG1365|consen 54 NHSADDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKR-HKHHMGTRYIE 132 (508)
T ss_pred ccccCcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHh-hhhhccCCcee
Confidence 34445667788999999999999999997754221 12345555788899999999999999999976 66667778887
Q ss_pred EeeeccCCCCCCCC-----CCCCcccCCCCeEEEeCCCCCCCHHHHHHHhhcc----CceEEEEEEeCCCCCceeEEEEE
Q psy8956 107 ITFVELKPGQRSKP-----VGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKF----GNIIEVKIVRDENGKSKGFGFIQ 177 (333)
Q Consensus 107 v~~~~~~~~~~~~~-----~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~----g~v~~~~~~~~~~~~~~~~~~v~ 177 (333)
|=-+.......-.. ........+.-.+.+++||.+.++.++.++|.+. |....+.++..++|+..|-||+.
T Consensus 133 vYka~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvl 212 (508)
T KOG1365|consen 133 VYKATGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVL 212 (508)
T ss_pred eeccCchhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEE
Confidence 75332111111000 1111222334567889999999999999999642 35667888998899999999999
Q ss_pred eCCHHHHHHHHHHhCCceeccceeEEEeeeecCC--------------CccCCCCC--C--CCCCCCccceEEEecCCCC
Q psy8956 178 FFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPG--------------KKVFPKVK--P--PLLQPARKNKIFVANLPSN 239 (333)
Q Consensus 178 f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~--------------~~~~~~~~--~--~~~~~~~~~~l~v~nl~~~ 239 (333)
|..+++|+.|+.. |...++.+.|.+-.+...+. ....+... + .........+|.+.+||+.
T Consensus 213 fa~ee~aq~aL~k-hrq~iGqRYIElFRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~ 291 (508)
T KOG1365|consen 213 FACEEDAQFALRK-HRQNIGQRYIELFRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYE 291 (508)
T ss_pred ecCHHHHHHHHHH-HHHHHhHHHHHHHHHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChh
Confidence 9999999999975 33333333333322221111 00000000 0 0111223568999999999
Q ss_pred CCHHHHHHHhhccCC-ee--EEEeecC-----CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEecCC
Q psy8956 240 INNSEFEELFARFGT-IT--SSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGT 301 (333)
Q Consensus 240 ~~~~~l~~~f~~~g~-v~--~v~i~~~-----~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~a~~ 301 (333)
.+.+||-++|..|-. |. .|.+... .|.|||+|.+.++|..|+...+++...+|.|.|-.++.
T Consensus 292 AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S~ 361 (508)
T KOG1365|consen 292 ATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCSV 361 (508)
T ss_pred hhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeeccH
Confidence 999999999988765 22 2444333 77899999999999999999999989999999987754
No 59
>KOG0105|consensus
Probab=99.63 E-value=1.4e-14 Score=108.42 Aligned_cols=167 Identities=17% Similarity=0.302 Sum_probs=134.6
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHhhccCceEEEEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeccceeEEEeeee
Q psy8956 129 KKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEI 208 (333)
Q Consensus 129 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~ 208 (333)
....|+|+|||.++-+.+|..+|-+||.|..|.+...+ ....||||+|.+..+|..|+..-++..++|..+.|++...
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~--g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprg 82 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP--GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRG 82 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC--CCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccC
Confidence 46789999999999999999999999999998876543 3467999999999999999999999999999999999865
Q ss_pred cCCCccCCCC-------------CCCCCCCCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecCCcEEEEEECCHH
Q psy8956 209 VPGKKVFPKV-------------KPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKHIGFIEFIMPK 275 (333)
Q Consensus 209 ~~~~~~~~~~-------------~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~~~~~fV~f~~~~ 275 (333)
-......... ..-.........+.|++||.+-+++||++...+-|.|-...+.++ +.+.|+|.+.+
T Consensus 83 gr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-g~GvV~~~r~e 161 (241)
T KOG0105|consen 83 GRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-GVGVVEYLRKE 161 (241)
T ss_pred CCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-cceeeeeeehh
Confidence 5331111110 000112223468999999999999999999999999988888777 79999999999
Q ss_pred HHHHHHHHhCCCeeC--CeeEEEEe
Q psy8956 276 HATHAVSTMNGHVFK--SKPLKVTL 298 (333)
Q Consensus 276 ~A~~a~~~l~g~~l~--g~~l~v~~ 298 (333)
+.+-|+..|....+. |...-+..
T Consensus 162 DMkYAvr~ld~~~~~seGe~~yirv 186 (241)
T KOG0105|consen 162 DMKYAVRKLDDQKFRSEGETAYIRV 186 (241)
T ss_pred hHHHHHHhhccccccCcCcEeeEEe
Confidence 999999999987764 54444433
No 60
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.63 E-value=2.3e-15 Score=100.07 Aligned_cols=70 Identities=36% Similarity=0.624 Sum_probs=64.6
Q ss_pred EEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeE
Q psy8956 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVI 106 (333)
Q Consensus 37 l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~ 106 (333)
|+|+|||+.+++++|+++|+.||.|..+.+..++.+..+|+|||+|.++++|.+|++.+++..+.|+.|.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 7999999999999999999999999999999988888999999999999999999999988999999874
No 61
>KOG0122|consensus
Probab=99.63 E-value=2e-15 Score=117.99 Aligned_cols=80 Identities=26% Similarity=0.451 Sum_probs=76.5
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeee
Q psy8956 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFV 110 (333)
Q Consensus 32 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~-~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~~ 110 (333)
..+.+|.|+|||.++++++|.++|.+||.|..+.+.+++ +|.++|||||.|.+.++|.+|+..|+|.-+..--|.|+|+
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 356779999999999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred c
Q psy8956 111 E 111 (333)
Q Consensus 111 ~ 111 (333)
.
T Consensus 267 k 267 (270)
T KOG0122|consen 267 K 267 (270)
T ss_pred C
Confidence 4
No 62
>KOG1548|consensus
Probab=99.62 E-value=4.7e-14 Score=115.79 Aligned_cols=176 Identities=17% Similarity=0.228 Sum_probs=140.3
Q ss_pred ccccceEEEeCCCCCCCHHHHHHHHhcCCCee--------EEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCC
Q psy8956 31 VYKENELHVNNLEPSVDNQALINEFKKFGTLR--------DVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGS 102 (333)
Q Consensus 31 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~--------~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g 102 (333)
+..+..|||.|||.++|.+++.++|++||-|. .|+++++..|.-+|-|.+.|-..+++..|++.|++..+.|
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg 210 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRG 210 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccC
Confidence 45567799999999999999999999999774 4889999999999999999999999999999999999999
Q ss_pred eeeEEeeeccCCCCC---C---C---------------------CCCCCcccCCCCeEEEeCCC----CCCC-------H
Q psy8956 103 KPVIITFVELKPGQR---S---K---------------------PVGPEEKQYKKDKVFVKNLV----ETVD-------E 144 (333)
Q Consensus 103 ~~i~v~~~~~~~~~~---~---~---------------------~~~~~~~~~~~~~l~v~~l~----~~~~-------~ 144 (333)
+.|+|+.+.....-. . + ...........++|.+.|+= ...+ +
T Consensus 211 ~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlk 290 (382)
T KOG1548|consen 211 KKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLK 290 (382)
T ss_pred cEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHH
Confidence 999999552211100 0 0 00112223345678888871 1222 5
Q ss_pred HHHHHHhhccCceEEEEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeccceeEEEeeeec
Q psy8956 145 EELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIV 209 (333)
Q Consensus 145 ~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~ 209 (333)
++|++-.+.||+|.++.+.-. .+.|.+.|.|.+.+.|..+++.|+|..+.|+.|........
T Consensus 291 edl~eec~K~G~v~~vvv~d~---hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~ 352 (382)
T KOG1548|consen 291 EDLTEECEKFGQVRKVVVYDR---HPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGK 352 (382)
T ss_pred HHHHHHHHHhCCcceEEEecc---CCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCc
Confidence 566777889999999888754 45789999999999999999999999999999999887544
No 63
>KOG0106|consensus
Probab=99.60 E-value=3e-15 Score=117.67 Aligned_cols=157 Identities=21% Similarity=0.403 Sum_probs=129.6
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeeccCC
Q psy8956 35 NELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKP 114 (333)
Q Consensus 35 ~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~~~~~~ 114 (333)
.++||++||+.+.+.+|..+|..||.+.++.+. .||+||+|.+.-+|..|+..|++..+.|-.+.+.++....
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk-------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~ 74 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK-------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKR 74 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee-------cccceeccCchhhhhcccchhcCceecceeeeeecccccc
Confidence 469999999999999999999999999988666 6889999999999999999999999999888888875433
Q ss_pred CCCCCCCCC---------CcccCCCCeEEEeCCCCCCCHHHHHHHhhccCceEEEEEEeCCCCCceeEEEEEeCCHHHHH
Q psy8956 115 GQRSKPVGP---------EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAE 185 (333)
Q Consensus 115 ~~~~~~~~~---------~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~v~f~~~~~a~ 185 (333)
.....+... .........+.+.+++..+..++|..+|.++|.+..... ..++++|+|.+.+++.
T Consensus 75 ~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~-------~~~~~~v~Fs~~~da~ 147 (216)
T KOG0106|consen 75 RGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA-------RRNFAFVEFSEQEDAK 147 (216)
T ss_pred cccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh-------hccccceeehhhhhhh
Confidence 332121111 112234457889999999999999999999999854433 2579999999999999
Q ss_pred HHHHHhCCceeccceeEEEe
Q psy8956 186 KAIIEMNGRMIQHNSTFVSL 205 (333)
Q Consensus 186 ~a~~~l~~~~~~~~~i~v~~ 205 (333)
.|+..|++..+.++.+.+..
T Consensus 148 ra~~~l~~~~~~~~~l~~~~ 167 (216)
T KOG0106|consen 148 RALEKLDGKKLNGRRISVEK 167 (216)
T ss_pred hcchhccchhhcCceeeecc
Confidence 99999999999999999944
No 64
>KOG0114|consensus
Probab=99.59 E-value=1.3e-14 Score=97.99 Aligned_cols=86 Identities=23% Similarity=0.418 Sum_probs=77.1
Q ss_pred cCcCCcCcccccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCC
Q psy8956 23 RSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGS 102 (333)
Q Consensus 23 ~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g 102 (333)
++.+..-+++.++.|||+|||+++|.++..++|.+||+|.+|+|--.. ..+|.|||.|++..+|++|+.+|.|..+.+
T Consensus 7 ~~~~~rlppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k--~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ 84 (124)
T KOG0114|consen 7 KKQNIRLPPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTK--ETRGTAFVVYEDIFDAKKACDHLSGYNVDN 84 (124)
T ss_pred ccCCCCCChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCcc--CcCceEEEEehHhhhHHHHHHHhcccccCC
Confidence 445666778888999999999999999999999999999988776544 468999999999999999999999999999
Q ss_pred eeeEEeee
Q psy8956 103 KPVIITFV 110 (333)
Q Consensus 103 ~~i~v~~~ 110 (333)
+.+.|-|.
T Consensus 85 ryl~vlyy 92 (124)
T KOG0114|consen 85 RYLVVLYY 92 (124)
T ss_pred ceEEEEec
Confidence 99999876
No 65
>KOG0121|consensus
Probab=99.57 E-value=8.4e-15 Score=102.85 Aligned_cols=80 Identities=19% Similarity=0.365 Sum_probs=74.7
Q ss_pred ccccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEee
Q psy8956 31 VYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITF 109 (333)
Q Consensus 31 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~-~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~ 109 (333)
..++++|||+||+.-++|+.|.++|+.+|+|..|.|-.++ +....|||||+|.+.++|..|+..++|+.+.++.|.+.+
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 3567899999999999999999999999999999888888 777899999999999999999999999999999999986
Q ss_pred e
Q psy8956 110 V 110 (333)
Q Consensus 110 ~ 110 (333)
.
T Consensus 113 D 113 (153)
T KOG0121|consen 113 D 113 (153)
T ss_pred c
Confidence 5
No 66
>KOG0125|consensus
Probab=99.56 E-value=2.2e-14 Score=116.83 Aligned_cols=79 Identities=28% Similarity=0.539 Sum_probs=73.0
Q ss_pred ccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeecc
Q psy8956 33 KENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVEL 112 (333)
Q Consensus 33 ~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~~~~ 112 (333)
-.++|+|.|||+..-+-||+..|.+||.|.+|.|+-+.-| ||||+||+|++++||++|-+.|||..+.||+|.|..+..
T Consensus 95 ~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERG-SKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATa 173 (376)
T KOG0125|consen 95 TPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERG-SKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATA 173 (376)
T ss_pred CCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCC-CCccceEEecChhhHHHHHHHhhcceeeceEEEEeccch
Confidence 3467999999999999999999999999999999987644 899999999999999999999999999999999997743
No 67
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.56 E-value=2.2e-14 Score=95.38 Aligned_cols=65 Identities=28% Similarity=0.650 Sum_probs=62.0
Q ss_pred EEEecCCCCCCHHHHHHHhhccCCeeEEEeecC-----CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEE
Q psy8956 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLK 295 (333)
Q Consensus 231 l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~-----~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~ 295 (333)
|||+|||..+++++|+++|++||.|..+.+..+ +++|||+|.+.++|.+|++.|+|..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999998884 88999999999999999999999999999985
No 68
>KOG4211|consensus
Probab=99.55 E-value=2.2e-13 Score=117.02 Aligned_cols=168 Identities=21% Similarity=0.260 Sum_probs=129.5
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHhhccCceEEEEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeccceeEEEeee
Q psy8956 128 YKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207 (333)
Q Consensus 128 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~ 207 (333)
....-|.+++||+..|+++|+++|+.++ |..+.+.+. +|+..|-|||+|.+++++.+|++. +...+..+-|.|-.+.
T Consensus 8 ~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~-~Gr~sGeA~Ve~~seedv~~Alkk-dR~~mg~RYIEVf~~~ 84 (510)
T KOG4211|consen 8 STAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRR-NGRPSGEAYVEFTSEEDVEKALKK-DRESMGHRYIEVFTAG 84 (510)
T ss_pred CcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEecc-CCCcCcceEEEeechHHHHHHHHh-hHHHhCCceEEEEccC
Confidence 3455688999999999999999999985 666444443 588899999999999999999984 6667778888887775
Q ss_pred ecCCCccCCCCCCCCCCCCccceEEEecCCCCCCHHHHHHHhhccCCeeE-EEeecC-----CcEEEEEECCHHHHHHHH
Q psy8956 208 IVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITS-SSLVSD-----KHIGFIEFIMPKHATHAV 281 (333)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~-v~i~~~-----~~~~fV~f~~~~~A~~a~ 281 (333)
..+.........+. ......+|.+.+||+.|+++||.++|+..-.|.. +.++.+ .+.|||+|.+.+.|++|+
T Consensus 85 ~~e~d~~~~~~g~~--s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al 162 (510)
T KOG4211|consen 85 GAEADWVMRPGGPN--SSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIAL 162 (510)
T ss_pred CccccccccCCCCC--CCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHH
Confidence 55442222222111 1135578999999999999999999998766665 333433 678999999999999999
Q ss_pred HHhCCCeeCCeeEEEEecCC
Q psy8956 282 STMNGHVFKSKPLKVTLSGT 301 (333)
Q Consensus 282 ~~l~g~~l~g~~l~v~~a~~ 301 (333)
. -|.+.|+-|-|.|-.+..
T Consensus 163 ~-rhre~iGhRYIEvF~Ss~ 181 (510)
T KOG4211|consen 163 G-RHRENIGHRYIEVFRSSR 181 (510)
T ss_pred H-HHHHhhccceEEeehhHH
Confidence 8 566788889999977744
No 69
>KOG0114|consensus
Probab=99.55 E-value=5.2e-14 Score=95.03 Aligned_cols=80 Identities=23% Similarity=0.373 Sum_probs=73.1
Q ss_pred CCCCCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC---CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEe
Q psy8956 222 LLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD---KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTL 298 (333)
Q Consensus 222 ~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~---~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~ 298 (333)
.......+.|||.|||+.++.+++.++|.+||.|..|++-.. +|.|||-|++..+|.+|++.|+|..++++.|.|-+
T Consensus 12 rlppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vly 91 (124)
T KOG0114|consen 12 RLPPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLY 91 (124)
T ss_pred CCChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEe
Confidence 334456789999999999999999999999999999999877 89999999999999999999999999999999987
Q ss_pred cCC
Q psy8956 299 SGT 301 (333)
Q Consensus 299 a~~ 301 (333)
-.+
T Consensus 92 yq~ 94 (124)
T KOG0114|consen 92 YQP 94 (124)
T ss_pred cCH
Confidence 654
No 70
>KOG0106|consensus
Probab=99.54 E-value=2.2e-14 Score=112.85 Aligned_cols=162 Identities=19% Similarity=0.365 Sum_probs=132.8
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhccCceEEEEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeccceeEEEeeeecC
Q psy8956 131 DKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVP 210 (333)
Q Consensus 131 ~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~ 210 (333)
..++|+++|..+.+.++..+|..||.+..+.+.. +++||+|.+..+|..|+..+++..+.+..+.+.++....
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~-------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~ 74 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN-------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKR 74 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec-------ccceeccCchhhhhcccchhcCceecceeeeeecccccc
Confidence 4689999999999999999999999999888775 588999999999999999999999999888888876432
Q ss_pred CCccCC-------CCCCCCCCCCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecCCcEEEEEECCHHHHHHHHHH
Q psy8956 211 GKKVFP-------KVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKHIGFIEFIMPKHATHAVST 283 (333)
Q Consensus 211 ~~~~~~-------~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~~~~~fV~f~~~~~A~~a~~~ 283 (333)
.....+ ............+.+.+.+++..+.+.+|.+.|+++|.+....+ ..+++||+|.+.++|.+|++.
T Consensus 75 ~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--~~~~~~v~Fs~~~da~ra~~~ 152 (216)
T KOG0106|consen 75 RGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--RRNFAFVEFSEQEDAKRALEK 152 (216)
T ss_pred cccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--hccccceeehhhhhhhhcchh
Confidence 222111 11111222334578899999999999999999999999965555 468999999999999999999
Q ss_pred hCCCeeCCeeEEEEecCC
Q psy8956 284 MNGHVFKSKPLKVTLSGT 301 (333)
Q Consensus 284 l~g~~l~g~~l~v~~a~~ 301 (333)
|+|..+.|+.|++...-.
T Consensus 153 l~~~~~~~~~l~~~~~~~ 170 (216)
T KOG0106|consen 153 LDGKKLNGRRISVEKNSR 170 (216)
T ss_pred ccchhhcCceeeecccCc
Confidence 999999999999955433
No 71
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.54 E-value=4.7e-14 Score=113.99 Aligned_cols=75 Identities=21% Similarity=0.288 Sum_probs=69.6
Q ss_pred cceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeec
Q psy8956 34 ENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVE 111 (333)
Q Consensus 34 ~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~~~ 111 (333)
.++|||+|||+.+|+++|+++|+.||.|.++.|.++.. ++|||||+|.++++|..|+ .|+|..|.|+.|.|.++.
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~--~~GfAFVtF~d~eaAe~Al-lLnG~~l~gr~V~Vt~a~ 78 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE--RSQIAYVTFKDPQGAETAL-LLSGATIVDQSVTITPAE 78 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC--CCCEEEEEeCcHHHHHHHH-HhcCCeeCCceEEEEecc
Confidence 46899999999999999999999999999999998763 5799999999999999999 599999999999999773
No 72
>KOG0107|consensus
Probab=99.53 E-value=2.9e-14 Score=105.95 Aligned_cols=78 Identities=31% Similarity=0.509 Sum_probs=71.8
Q ss_pred cceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeeccC
Q psy8956 34 ENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELK 113 (333)
Q Consensus 34 ~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~~~~~ 113 (333)
.++|||+||+..+++.||...|..||++.+|.|..+ ..|||||+|+++-||..|+..|+|..|+|..|.|+++.-.
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~ 85 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGR 85 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCC
Confidence 578999999999999999999999999999988886 4789999999999999999999999999999999988544
Q ss_pred CC
Q psy8956 114 PG 115 (333)
Q Consensus 114 ~~ 115 (333)
+.
T Consensus 86 ~r 87 (195)
T KOG0107|consen 86 PR 87 (195)
T ss_pred cc
Confidence 43
No 73
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.53 E-value=9.8e-14 Score=112.17 Aligned_cols=74 Identities=19% Similarity=0.348 Sum_probs=69.7
Q ss_pred cceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC---CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEecCCC
Q psy8956 228 KNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD---KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302 (333)
Q Consensus 228 ~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~---~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~a~~~ 302 (333)
.++|||+|||+.+++++|+++|+.||.|.+|.++.+ +++|||+|.+.++|..|+. |||..|+|+.|+|.++..-
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccCC
Confidence 479999999999999999999999999999999877 6899999999999999996 9999999999999998753
No 74
>KOG0149|consensus
Probab=99.50 E-value=1e-13 Score=108.16 Aligned_cols=84 Identities=18% Similarity=0.321 Sum_probs=74.2
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeee
Q psy8956 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFV 110 (333)
Q Consensus 32 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~-~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~~ 110 (333)
..-.+|||+||++.+..++|+++|++||+|++..|+-|+ +|+++||+||+|.+.++|.+|++. .+-.|.||+..+.++
T Consensus 10 T~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA 88 (247)
T KOG0149|consen 10 TTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLA 88 (247)
T ss_pred ceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchh
Confidence 566789999999999999999999999999999999999 999999999999999999999965 333589999999977
Q ss_pred ccCCCC
Q psy8956 111 ELKPGQ 116 (333)
Q Consensus 111 ~~~~~~ 116 (333)
......
T Consensus 89 ~lg~~p 94 (247)
T KOG0149|consen 89 SLGGKP 94 (247)
T ss_pred hhcCcc
Confidence 553333
No 75
>smart00362 RRM_2 RNA recognition motif.
Probab=99.50 E-value=2.2e-13 Score=90.87 Aligned_cols=72 Identities=33% Similarity=0.672 Sum_probs=66.9
Q ss_pred eEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEe
Q psy8956 36 ELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIIT 108 (333)
Q Consensus 36 ~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~ 108 (333)
+|+|+|||..++.++|+++|+.||.+..+.+..+. +.++|+|||+|.+.++|..|++.+++..+.|+.+.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~-~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT-GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC-CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 48999999999999999999999999999988876 6788999999999999999999999999999988763
No 76
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.50 E-value=6.3e-13 Score=113.99 Aligned_cols=133 Identities=32% Similarity=0.493 Sum_probs=109.9
Q ss_pred cceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeecc
Q psy8956 34 ENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVEL 112 (333)
Q Consensus 34 ~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~-~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~~~~ 112 (333)
.++|||+|||..+|+++|.++|..||.|..+.+..++ ++.++|+|||+|.+.++|..|+..++|..+.|+.+.|.+...
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 6999999999999999999999999999999999997 999999999999999999999999999999999999998532
Q ss_pred --CCCCCCC-----------CCCCCcccCCCCeEEEeCCCCCCCHHHHHHHhhccCceEEEEEEeCC
Q psy8956 113 --KPGQRSK-----------PVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE 166 (333)
Q Consensus 113 --~~~~~~~-----------~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~ 166 (333)
.+..... .............+++.+++..+....+...|..+|.+....+....
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSK 261 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCCC
Confidence 1111111 11112233455678999999999999999999999998655555443
No 77
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.48 E-value=2.5e-13 Score=90.21 Aligned_cols=65 Identities=25% Similarity=0.647 Sum_probs=60.0
Q ss_pred EEEecCCCCCCHHHHHHHhhccCCeeEEEeecC-----CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEE
Q psy8956 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLK 295 (333)
Q Consensus 231 l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~-----~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~ 295 (333)
|+|+|||..+++++|+++|+.||.|..+.+... +++|||+|.+.++|.+|++.++|..|+|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 789999999999999999999999999999887 68999999999999999999999999999985
No 78
>KOG4207|consensus
Probab=99.47 E-value=8.9e-14 Score=106.03 Aligned_cols=84 Identities=26% Similarity=0.462 Sum_probs=78.0
Q ss_pred ccccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEee
Q psy8956 31 VYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITF 109 (333)
Q Consensus 31 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~-~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~ 109 (333)
++-...|.|.||-..++.++|+.+|++||.|-+|.|..+. ++.++|||||.|....+|+.|++.|+|.++.|+.|.|++
T Consensus 10 v~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ 89 (256)
T KOG4207|consen 10 VEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQM 89 (256)
T ss_pred cccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehh
Confidence 3445679999999999999999999999999999999999 999999999999999999999999999999999999998
Q ss_pred eccCC
Q psy8956 110 VELKP 114 (333)
Q Consensus 110 ~~~~~ 114 (333)
+....
T Consensus 90 arygr 94 (256)
T KOG4207|consen 90 ARYGR 94 (256)
T ss_pred hhcCC
Confidence 75443
No 79
>KOG0126|consensus
Probab=99.46 E-value=6.6e-15 Score=109.85 Aligned_cols=77 Identities=18% Similarity=0.384 Sum_probs=73.5
Q ss_pred ccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEee
Q psy8956 33 KENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITF 109 (333)
Q Consensus 33 ~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~-~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~ 109 (333)
.+--|||+|||+..||.||.-.|++||.|++|.++++. ||.|+||||+.|++.-+...|+..|||..+.|+.|.|.-
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDH 111 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDH 111 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeee
Confidence 34459999999999999999999999999999999999 999999999999999999999999999999999999983
No 80
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.46 E-value=9e-13 Score=88.35 Aligned_cols=74 Identities=38% Similarity=0.715 Sum_probs=69.0
Q ss_pred eEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEee
Q psy8956 36 ELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITF 109 (333)
Q Consensus 36 ~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~ 109 (333)
+|+|+|||+.+++++|+++|+.||.|..+.+..+..+...|+|||+|.+.++|..|++.+++..+.|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 48999999999999999999999999999999888667789999999999999999999999999999998863
No 81
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.46 E-value=5.5e-13 Score=84.09 Aligned_cols=55 Identities=31% Similarity=0.656 Sum_probs=51.7
Q ss_pred HHHHhhccCCeeEEEeecCC-cEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEec
Q psy8956 245 FEELFARFGTITSSSLVSDK-HIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299 (333)
Q Consensus 245 l~~~f~~~g~v~~v~i~~~~-~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~a 299 (333)
|+++|++||.|..+.+.... ++|||+|.+.++|.+|++.|||..++|++|+|.||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999999886 99999999999999999999999999999999986
No 82
>KOG0120|consensus
Probab=99.45 E-value=6.1e-13 Score=117.22 Aligned_cols=181 Identities=20% Similarity=0.351 Sum_probs=137.4
Q ss_pred CcccccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEE
Q psy8956 29 NKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVII 107 (333)
Q Consensus 29 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~-~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v 107 (333)
......++++|++||...++..+++++..+|++....++++. +|-++||||.+|.++.....|+..|||+.+.++.+.|
T Consensus 284 ~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvv 363 (500)
T KOG0120|consen 284 DVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVV 363 (500)
T ss_pred CcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEe
Confidence 344566789999999999999999999999999999999999 7899999999999999999999999999999999999
Q ss_pred eeeccCCCCCCCCCC-------------CCcccCCCCeEEEeCCCC---CCCHHHH-------HHHhhccCceEEEEEEe
Q psy8956 108 TFVELKPGQRSKPVG-------------PEEKQYKKDKVFVKNLVE---TVDEEEL-------KSHFIKFGNIIEVKIVR 164 (333)
Q Consensus 108 ~~~~~~~~~~~~~~~-------------~~~~~~~~~~l~v~~l~~---~~~~~~l-------~~~f~~~g~v~~~~~~~ 164 (333)
+.+-........... ......+...|++.|+=. -..++++ +.-+.+||.|..|.+.+
T Consensus 364 q~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr 443 (500)
T KOG0120|consen 364 QRAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPR 443 (500)
T ss_pred ehhhccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCC
Confidence 965322211111000 011122333444444310 1133333 44456899999999988
Q ss_pred C-C---CCCceeEEEEEeCCHHHHHHHHHHhCCceeccceeEEEeeeec
Q psy8956 165 D-E---NGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIV 209 (333)
Q Consensus 165 ~-~---~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~ 209 (333)
. . .....|-.||+|.+.+++++|...|+|..|.++.+...+....
T Consensus 444 ~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYydeD 492 (500)
T KOG0120|consen 444 PYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDED 492 (500)
T ss_pred CCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCHH
Confidence 7 3 2345678999999999999999999999999999998887543
No 83
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.45 E-value=4.7e-13 Score=106.41 Aligned_cols=74 Identities=23% Similarity=0.293 Sum_probs=68.7
Q ss_pred cceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeee
Q psy8956 34 ENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFV 110 (333)
Q Consensus 34 ~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~~ 110 (333)
..+|+|+||++.+|+++|+++|+.||.|.+|.|.++. ...++|||+|.++++|..|+ .|+|..|.++.|.|...
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~--et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~ 78 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG--EYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRW 78 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC--CcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeC
Confidence 3679999999999999999999999999999999884 55789999999999999999 79999999999999865
No 84
>KOG0107|consensus
Probab=99.44 E-value=4.5e-13 Score=99.69 Aligned_cols=79 Identities=28% Similarity=0.497 Sum_probs=73.5
Q ss_pred ccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC-CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEecCCCCCC
Q psy8956 227 RKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKPGV 305 (333)
Q Consensus 227 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~-~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~a~~~~~~ 305 (333)
..+.|||+||+..+++.||..+|..||.+..|.|-.. .+||||+|++..+|..|+..|+|..|+|..|.|.+++..+..
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~r~ 88 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRPRG 88 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCccc
Confidence 4588999999999999999999999999999988766 889999999999999999999999999999999999887653
No 85
>smart00360 RRM RNA recognition motif.
Probab=99.43 E-value=7.6e-13 Score=87.88 Aligned_cols=70 Identities=36% Similarity=0.675 Sum_probs=65.3
Q ss_pred EeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEe
Q psy8956 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIIT 108 (333)
Q Consensus 39 V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~-~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~ 108 (333)
|+|||..+++++|+++|+.||.|..+.+..+. ++.++|+|||+|.+.++|..|++.+++..+.|+.+.|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57999999999999999999999999999887 68899999999999999999999999999999988763
No 86
>KOG4660|consensus
Probab=99.43 E-value=3.8e-13 Score=117.42 Aligned_cols=78 Identities=28% Similarity=0.451 Sum_probs=69.6
Q ss_pred cCCcCcccccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCee
Q psy8956 25 NKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKP 104 (333)
Q Consensus 25 ~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~ 104 (333)
.+........++|+|-|||..+++++|.++|+.||+|..|+.-+. ..|++||+|.+.-+|++|++.|++..+.|+.
T Consensus 66 ~np~~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~----~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~ 141 (549)
T KOG4660|consen 66 DNPSEKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN----KRGIVFVEFYDVRDAERALKALNRREIAGKR 141 (549)
T ss_pred CCCCcccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc----cCceEEEEEeehHhHHHHHHHHHHHHhhhhh
Confidence 444455677889999999999999999999999999998776665 4789999999999999999999999999998
Q ss_pred eE
Q psy8956 105 VI 106 (333)
Q Consensus 105 i~ 106 (333)
+.
T Consensus 142 ~k 143 (549)
T KOG4660|consen 142 IK 143 (549)
T ss_pred hc
Confidence 88
No 87
>KOG4212|consensus
Probab=99.43 E-value=9.5e-12 Score=105.37 Aligned_cols=173 Identities=22% Similarity=0.346 Sum_probs=143.1
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHhhc-cCceEEEEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeccceeEEEee
Q psy8956 128 YKKDKVFVKNLVETVDEEELKSHFIK-FGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLA 206 (333)
Q Consensus 128 ~~~~~l~v~~l~~~~~~~~l~~~f~~-~g~v~~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~ 206 (333)
...+.+||.|||.++.=++|+.+|.. .|.|..|.++.+..|++++.|.|+|.++|.+++|++.|+...+.|+.+.|+-.
T Consensus 42 ~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd 121 (608)
T KOG4212|consen 42 ARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKED 121 (608)
T ss_pred cccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEecc
Confidence 34567999999999999999999975 79999999999999999999999999999999999999999999999999776
Q ss_pred eecCC-------------------------------------------CccCCCC-------------------------
Q psy8956 207 EIVPG-------------------------------------------KKVFPKV------------------------- 218 (333)
Q Consensus 207 ~~~~~-------------------------------------------~~~~~~~------------------------- 218 (333)
...+. .+.....
T Consensus 122 ~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~ 201 (608)
T KOG4212|consen 122 HDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSA 201 (608)
T ss_pred CchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchh
Confidence 54222 0000000
Q ss_pred ---C-CCCCCCCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC-----CcEEEEEECCHHHHHHHHHHhCCCee
Q psy8956 219 ---K-PPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVF 289 (333)
Q Consensus 219 ---~-~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~-----~~~~fV~f~~~~~A~~a~~~l~g~~l 289 (333)
. ...-.++....+||.||.+.+..+.|++.|.-.|.|+.+.+..+ +++|.++|+.+-+|-.|+..|++.-+
T Consensus 202 ~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~~g~ 281 (608)
T KOG4212|consen 202 SFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDRQGL 281 (608)
T ss_pred hhhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHHHHHhhccCCC
Confidence 0 00013444678999999999999999999999999999877766 88999999999999999999998777
Q ss_pred CCeeEEEEecC
Q psy8956 290 KSKPLKVTLSG 300 (333)
Q Consensus 290 ~g~~l~v~~a~ 300 (333)
.+++..+++.+
T Consensus 282 ~~~~~~~Rl~~ 292 (608)
T KOG4212|consen 282 FDRRMTVRLDR 292 (608)
T ss_pred ccccceeeccc
Confidence 88888887743
No 88
>KOG0121|consensus
Probab=99.42 E-value=4.9e-13 Score=94.05 Aligned_cols=75 Identities=20% Similarity=0.399 Sum_probs=69.7
Q ss_pred ccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC------CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEecC
Q psy8956 227 RKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSG 300 (333)
Q Consensus 227 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~------~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~a~ 300 (333)
.+++|||+||+..+++++|.++|+++|.|..|.+-.+ -|||||+|.+.++|+.|+.-++|..++.++|.+.|.-
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~ 114 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDA 114 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccc
Confidence 4589999999999999999999999999999887766 6799999999999999999999999999999999875
Q ss_pred C
Q psy8956 301 T 301 (333)
Q Consensus 301 ~ 301 (333)
.
T Consensus 115 G 115 (153)
T KOG0121|consen 115 G 115 (153)
T ss_pred c
Confidence 4
No 89
>KOG0130|consensus
Probab=99.42 E-value=5e-13 Score=94.85 Aligned_cols=82 Identities=16% Similarity=0.362 Sum_probs=76.9
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeee
Q psy8956 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFV 110 (333)
Q Consensus 32 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~-~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~~ 110 (333)
.+.-.|||+++-+.+|+++|.+.|..||+|.++.+..++ +|-.+|||+|+|.+.++|++|+..+||..+.|+.+.|.|+
T Consensus 70 VEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~ 149 (170)
T KOG0130|consen 70 VEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWC 149 (170)
T ss_pred eeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEE
Confidence 556679999999999999999999999999999999999 9999999999999999999999999999999999999977
Q ss_pred ccC
Q psy8956 111 ELK 113 (333)
Q Consensus 111 ~~~ 113 (333)
-.+
T Consensus 150 Fv~ 152 (170)
T KOG0130|consen 150 FVK 152 (170)
T ss_pred Eec
Confidence 433
No 90
>KOG0113|consensus
Probab=99.42 E-value=8e-13 Score=106.52 Aligned_cols=79 Identities=24% Similarity=0.471 Sum_probs=75.1
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeee
Q psy8956 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFV 110 (333)
Q Consensus 32 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~-~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~~ 110 (333)
.+=++|||+-|+.+++|+.|+..|+.||+|..|.|+.+. +|.++|||||+|.++.+...|.+..+|..|.|+.|.|.+-
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 344779999999999999999999999999999999998 9999999999999999999999999999999999999865
No 91
>KOG0122|consensus
Probab=99.42 E-value=8.9e-13 Score=103.37 Aligned_cols=78 Identities=29% Similarity=0.479 Sum_probs=73.6
Q ss_pred CCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC------CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEe
Q psy8956 225 PARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTL 298 (333)
Q Consensus 225 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~------~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~ 298 (333)
....++|.|.||+.++++++|+++|.+||.|.++.+..+ +|||||.|.+.++|.+|++.|||+=++.-.|.|.|
T Consensus 186 R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEw 265 (270)
T KOG0122|consen 186 RDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEW 265 (270)
T ss_pred CCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEe
Confidence 335678999999999999999999999999999999888 99999999999999999999999999999999999
Q ss_pred cCCC
Q psy8956 299 SGTK 302 (333)
Q Consensus 299 a~~~ 302 (333)
++++
T Consensus 266 skP~ 269 (270)
T KOG0122|consen 266 SKPS 269 (270)
T ss_pred cCCC
Confidence 9985
No 92
>KOG4207|consensus
Probab=99.42 E-value=6.7e-13 Score=101.32 Aligned_cols=79 Identities=19% Similarity=0.396 Sum_probs=74.2
Q ss_pred ccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC------CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEecC
Q psy8956 227 RKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSG 300 (333)
Q Consensus 227 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~------~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~a~ 300 (333)
....|.|-||.+.++.++|+.+|++||.|-+|.|+.+ +|||||.|....+|+.|++.|+|.+|+|+.|.|++|+
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 4578999999999999999999999999999999988 8999999999999999999999999999999999998
Q ss_pred CCCCC
Q psy8956 301 TKPGV 305 (333)
Q Consensus 301 ~~~~~ 305 (333)
--...
T Consensus 92 ygr~~ 96 (256)
T KOG4207|consen 92 YGRPS 96 (256)
T ss_pred cCCCc
Confidence 76553
No 93
>PLN03213 repressor of silencing 3; Provisional
Probab=99.41 E-value=1.1e-12 Score=112.70 Aligned_cols=77 Identities=21% Similarity=0.405 Sum_probs=71.6
Q ss_pred CCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC--CcEEEEEECCH--HHHHHHHHHhCCCeeCCeeEEEEecC
Q psy8956 225 PARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD--KHIGFIEFIMP--KHATHAVSTMNGHVFKSKPLKVTLSG 300 (333)
Q Consensus 225 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~--~~~~fV~f~~~--~~A~~a~~~l~g~~l~g~~l~v~~a~ 300 (333)
...+.+|||+||++.++++||+..|..||.|.+|.|++. ||||||+|.+. .++.+|+..|||..+.|+.|+|..|+
T Consensus 7 ~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAK 86 (759)
T PLN03213 7 GGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAK 86 (759)
T ss_pred CCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeecc
Confidence 345678999999999999999999999999999999976 89999999987 78999999999999999999999996
Q ss_pred C
Q psy8956 301 T 301 (333)
Q Consensus 301 ~ 301 (333)
+
T Consensus 87 P 87 (759)
T PLN03213 87 E 87 (759)
T ss_pred H
Confidence 5
No 94
>PLN03213 repressor of silencing 3; Provisional
Probab=99.41 E-value=9.4e-13 Score=113.09 Aligned_cols=75 Identities=27% Similarity=0.348 Sum_probs=69.3
Q ss_pred ccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCH--HHHHHHHHHhcCCccCCeeeEEeee
Q psy8956 33 KENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTP--AEAKKARVEMNGHLIGSKPVIITFV 110 (333)
Q Consensus 33 ~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~--e~A~~al~~l~~~~~~g~~i~v~~~ 110 (333)
..-+|||+||++.+++++|...|..||.|.++.|++. +| +|||||+|.+. .++.+|++.|||..|.|+.|+|.-+
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE-TG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKA 85 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT-KG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKA 85 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc-cC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeec
Confidence 3467999999999999999999999999999999943 66 99999999988 7899999999999999999999966
No 95
>KOG4307|consensus
Probab=99.40 E-value=4.7e-12 Score=112.94 Aligned_cols=174 Identities=11% Similarity=0.001 Sum_probs=128.3
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeee
Q psy8956 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFV 110 (333)
Q Consensus 32 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~-~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~~ 110 (333)
...+.+-+.+.+++..+.|++++|... .|..+.+..+. .+...|-++|+|....++++|++. +...+.++.+.+...
T Consensus 309 ~d~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~r-n~~~~~~R~~q~~P~ 386 (944)
T KOG4307|consen 309 SDKYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTR-NPSDDVNRPFQTGPP 386 (944)
T ss_pred chhheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHhc-CchhhhhcceeecCC
Confidence 344667788999999999999998653 35556666666 343488999999999999999965 777778888887754
Q ss_pred ccCCCCCCC--------------------------CC--CCCcccCCCCeEEEeCCCCCCCHHHHHHHhhccCceEE-EE
Q psy8956 111 ELKPGQRSK--------------------------PV--GPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIE-VK 161 (333)
Q Consensus 111 ~~~~~~~~~--------------------------~~--~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~-~~ 161 (333)
......-.. .. ...........|||.+||..+++..+.++|.....|+. |.
T Consensus 387 g~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~ 466 (944)
T KOG4307|consen 387 GNLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIE 466 (944)
T ss_pred CccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeE
Confidence 221111000 00 01112234568999999999999999999998877876 77
Q ss_pred EEeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeccceeEEEeee
Q psy8956 162 IVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207 (333)
Q Consensus 162 ~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~ 207 (333)
+.+.++++.++.|||.|..++.+-.|...-+...+..+.|+|.-..
T Consensus 467 lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~ 512 (944)
T KOG4307|consen 467 LTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIA 512 (944)
T ss_pred eccCCcccccchhhheeccccccchhhhcccccccCceEEEeechh
Confidence 8888888999999999999888887776666666666777776544
No 96
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.38 E-value=4.6e-12 Score=100.81 Aligned_cols=75 Identities=16% Similarity=0.251 Sum_probs=69.7
Q ss_pred ccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC---CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEecCCC
Q psy8956 227 RKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD---KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302 (333)
Q Consensus 227 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~---~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~a~~~ 302 (333)
.+.+|+|+||++.+++++|+++|+.||.|.+|++..+ .++|||+|.+.++|..|+. |+|..|.|++|.|..+..-
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~~y 81 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWGQY 81 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCccc
Confidence 4579999999999999999999999999999999987 5799999999999999995 9999999999999887753
No 97
>smart00362 RRM_2 RNA recognition motif.
Probab=99.38 E-value=3.8e-12 Score=84.72 Aligned_cols=68 Identities=34% Similarity=0.713 Sum_probs=64.0
Q ss_pred eEEEecCCCCCCHHHHHHHhhccCCeeEEEeecCC----cEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEE
Q psy8956 230 KIFVANLPSNINNSEFEELFARFGTITSSSLVSDK----HIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVT 297 (333)
Q Consensus 230 ~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~~----~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~ 297 (333)
+|+|+|+|..+++++|+++|++||.|..+.+..+. ++|||+|.+.++|.+|++.++|..+.|+.|.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999988775 899999999999999999999999999999874
No 98
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.37 E-value=4.4e-12 Score=79.93 Aligned_cols=56 Identities=30% Similarity=0.691 Sum_probs=50.8
Q ss_pred HHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeee
Q psy8956 51 LINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFV 110 (333)
Q Consensus 51 l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~~ 110 (333)
|+++|++||.|.++.+.++. .++|||+|.+.++|..|++.|||..+.|+.|.|.|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999888763 589999999999999999999999999999999875
No 99
>KOG0111|consensus
Probab=99.34 E-value=8.9e-13 Score=101.56 Aligned_cols=80 Identities=21% Similarity=0.415 Sum_probs=76.5
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeee
Q psy8956 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFV 110 (333)
Q Consensus 32 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~-~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~~ 110 (333)
...|+|||++|...+|+.-|...|-.||.|.+|++..+. +.+++||+||+|.-.|+|.+|+..||+..++|+.|+|.++
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 446889999999999999999999999999999999999 8999999999999999999999999999999999999998
Q ss_pred c
Q psy8956 111 E 111 (333)
Q Consensus 111 ~ 111 (333)
.
T Consensus 88 k 88 (298)
T KOG0111|consen 88 K 88 (298)
T ss_pred C
Confidence 4
No 100
>KOG0149|consensus
Probab=99.32 E-value=9.1e-12 Score=97.41 Aligned_cols=74 Identities=24% Similarity=0.431 Sum_probs=67.8
Q ss_pred ccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC------CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEecC
Q psy8956 227 RKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSG 300 (333)
Q Consensus 227 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~------~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~a~ 300 (333)
.-+.|||++|+..+..++|+++|++||.|....++.| +||+||+|.+.++|.+|.+.- +-.|+||+.+|++|.
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp-~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDP-NPIIDGRKANCNLAS 89 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCC-CCcccccccccchhh
Confidence 4478999999999999999999999999999988887 899999999999999998854 468999999999997
Q ss_pred C
Q psy8956 301 T 301 (333)
Q Consensus 301 ~ 301 (333)
.
T Consensus 90 l 90 (247)
T KOG0149|consen 90 L 90 (247)
T ss_pred h
Confidence 6
No 101
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.31 E-value=7.1e-11 Score=101.20 Aligned_cols=134 Identities=34% Similarity=0.520 Sum_probs=111.9
Q ss_pred CCeEEEeCCCCCCCHHHHHHHhhccCceEEEEEEeCC-CCCceeEEEEEeCCHHHHHHHHHHhCCceeccceeEEEeeee
Q psy8956 130 KDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEI 208 (333)
Q Consensus 130 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~ 208 (333)
..+|||+|||..+++++|.++|..+|.+..+.+..+. ++..+|+|||+|.+.+++..|+..+++..+.|+.+.|.+...
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 6899999999999999999999999999999999985 899999999999999999999999999999999999999653
Q ss_pred ----cCCCcc-------CCCCCCCCCCCCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC
Q psy8956 209 ----VPGKKV-------FPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD 263 (333)
Q Consensus 209 ----~~~~~~-------~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~ 263 (333)
...... ................+++.+++..+...++...|..+|.+....+...
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPS 260 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCC
Confidence 111110 0011222334556788999999999999999999999999976666655
No 102
>KOG0111|consensus
Probab=99.30 E-value=2.3e-12 Score=99.27 Aligned_cols=81 Identities=22% Similarity=0.407 Sum_probs=75.9
Q ss_pred ccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC------CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEecC
Q psy8956 227 RKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSG 300 (333)
Q Consensus 227 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~------~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~a~ 300 (333)
..++|||++|...+++.-|...|=+||.|..|.++.+ |+|+||+|...++|..|+..||+.+|.||.|+|++|+
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 4589999999999999999999999999999999988 9999999999999999999999999999999999999
Q ss_pred CCCCCCC
Q psy8956 301 TKPGVSI 307 (333)
Q Consensus 301 ~~~~~~~ 307 (333)
+...+..
T Consensus 89 P~kikeg 95 (298)
T KOG0111|consen 89 PEKIKEG 95 (298)
T ss_pred CccccCC
Confidence 8766553
No 103
>KOG0108|consensus
Probab=99.28 E-value=1.1e-11 Score=108.72 Aligned_cols=80 Identities=16% Similarity=0.365 Sum_probs=76.5
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeeccC
Q psy8956 35 NELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELK 113 (333)
Q Consensus 35 ~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~-~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~~~~~ 113 (333)
+.|||+|+|+++++++|..+|...|.|.++++..|+ +|..+||||++|.++++|..|+..|||..+.|+.|+|.|....
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 789999999999999999999999999999999999 9999999999999999999999999999999999999988543
Q ss_pred C
Q psy8956 114 P 114 (333)
Q Consensus 114 ~ 114 (333)
+
T Consensus 99 ~ 99 (435)
T KOG0108|consen 99 K 99 (435)
T ss_pred c
Confidence 3
No 104
>KOG4206|consensus
Probab=99.27 E-value=1.7e-11 Score=95.69 Aligned_cols=78 Identities=23% Similarity=0.517 Sum_probs=71.8
Q ss_pred cceEEEecCCCCCCHHHHHH----HhhccCCeeEEEeecC---CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEecC
Q psy8956 228 KNKIFVANLPSNINNSEFEE----LFARFGTITSSSLVSD---KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSG 300 (333)
Q Consensus 228 ~~~l~v~nl~~~~~~~~l~~----~f~~~g~v~~v~i~~~---~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~a~ 300 (333)
..||||.||+..+..++|+. +|++||.|..|..... +|.|||.|++.+.|..|+..|+|..+.|+++++.||+
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA~ 88 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYAK 88 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheeccc
Confidence 34999999999999999887 9999999999988866 9999999999999999999999999999999999998
Q ss_pred CCCCC
Q psy8956 301 TKPGV 305 (333)
Q Consensus 301 ~~~~~ 305 (333)
.+.+-
T Consensus 89 s~sdi 93 (221)
T KOG4206|consen 89 SDSDI 93 (221)
T ss_pred Cccch
Confidence 76544
No 105
>smart00361 RRM_1 RNA recognition motif.
Probab=99.26 E-value=3.2e-11 Score=79.67 Aligned_cols=61 Identities=23% Similarity=0.473 Sum_probs=53.9
Q ss_pred HHHHHHHHh----cCCCeeEEE-EeeCC-C--CCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEe
Q psy8956 48 NQALINEFK----KFGTLRDVR-VARNK-N--DESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIIT 108 (333)
Q Consensus 48 ~~~l~~~f~----~~g~v~~v~-i~~~~-~--~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~ 108 (333)
+++|+++|+ .||.|.++. +..++ + +.++|+|||+|.+.++|.+|++.|||..+.|+.|.++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 578888988 999999985 55555 5 8899999999999999999999999999999998763
No 106
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.26 E-value=6e-11 Score=79.32 Aligned_cols=69 Identities=35% Similarity=0.730 Sum_probs=64.8
Q ss_pred eEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC-----CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEe
Q psy8956 230 KIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTL 298 (333)
Q Consensus 230 ~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~-----~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~ 298 (333)
+|+|+|||..+++++|+++|+.||.|..+.+..+ +++|||+|.+.++|..|++.+++..+.|+.+.|++
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999998876 58999999999999999999999999999999874
No 107
>KOG0113|consensus
Probab=99.26 E-value=4.6e-11 Score=96.51 Aligned_cols=82 Identities=23% Similarity=0.372 Sum_probs=75.2
Q ss_pred CCCCCCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC------CcEEEEEECCHHHHHHHHHHhCCCeeCCeeE
Q psy8956 221 PLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294 (333)
Q Consensus 221 ~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~------~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l 294 (333)
+.....+-+||||+-|++.+++..|+..|+.||.|+.|+++.+ +|||||+|.+..+...|.+..+|..|+|+.|
T Consensus 94 p~a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri 173 (335)
T KOG0113|consen 94 PNAIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRI 173 (335)
T ss_pred CcccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEE
Confidence 3345577899999999999999999999999999999999988 8999999999999999999999999999999
Q ss_pred EEEecCCC
Q psy8956 295 KVTLSGTK 302 (333)
Q Consensus 295 ~v~~a~~~ 302 (333)
.|.+-...
T Consensus 174 ~VDvERgR 181 (335)
T KOG0113|consen 174 LVDVERGR 181 (335)
T ss_pred EEEecccc
Confidence 99876554
No 108
>smart00360 RRM RNA recognition motif.
Probab=99.24 E-value=4.2e-11 Score=79.32 Aligned_cols=65 Identities=42% Similarity=0.750 Sum_probs=60.2
Q ss_pred EecCCCCCCHHHHHHHhhccCCeeEEEeecC------CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEE
Q psy8956 233 VANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVT 297 (333)
Q Consensus 233 v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~------~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~ 297 (333)
|+|||..+++++|+++|++||.|..+.+... +++|||+|.+.++|.+|++.+++..++|+.|.|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 5789999999999999999999999988876 4699999999999999999999999999999874
No 109
>KOG0129|consensus
Probab=99.23 E-value=4e-10 Score=97.99 Aligned_cols=163 Identities=21% Similarity=0.251 Sum_probs=118.6
Q ss_pred cCCcCcccccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCC--C--CCccc---EEEEEeCCHHHHHHHHHHhcC
Q psy8956 25 NKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK--N--DESRG---FAIIVFNTPAEAKKARVEMNG 97 (333)
Q Consensus 25 ~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~--~--~~~~g---~a~v~f~~~e~A~~al~~l~~ 97 (333)
........-+++|||++||+.++|+.|...|..||.+. |...... . -..+| |+|+.|+++..++.-+..+..
T Consensus 250 ~~~~~~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~ 328 (520)
T KOG0129|consen 250 PRGYRSPRYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE 328 (520)
T ss_pred CCCCCccccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh
Confidence 34555567789999999999999999999999999764 3444211 1 12455 999999999999988776533
Q ss_pred C---c--------cCCeeeEEeeeccCCCCCCCCCCCCcccCCCCeEEEeCCCCCCCHHHHHHHhh-ccCceEEEEEEeC
Q psy8956 98 H---L--------IGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFI-KFGNIIEVKIVRD 165 (333)
Q Consensus 98 ~---~--------~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~-~~g~v~~~~~~~~ 165 (333)
. . +.++.+.|+........ -.........+.+++||++||..++.++|..+|+ -||.|..+-+-.+
T Consensus 329 ~~~~~yf~vss~~~k~k~VQIrPW~laDs~--fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD 406 (520)
T KOG0129|consen 329 GEGNYYFKVSSPTIKDKEVQIRPWVLADSD--FVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTD 406 (520)
T ss_pred cccceEEEEecCcccccceeEEeeEeccch--hhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccC
Confidence 1 1 12233333322111111 1112344556788999999999999999999999 5999998888877
Q ss_pred C-CCCceeEEEEEeCCHHHHHHHHHH
Q psy8956 166 E-NGKSKGFGFIQFFSYKAAEKAIIE 190 (333)
Q Consensus 166 ~-~~~~~~~~~v~f~~~~~a~~a~~~ 190 (333)
+ -...+|.|-|+|.+...-.+|+..
T Consensus 407 ~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 407 PKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred cccCCCCCcceeeecccHHHHHHHhh
Confidence 4 567899999999999999999874
No 110
>KOG0130|consensus
Probab=99.20 E-value=5.1e-11 Score=84.75 Aligned_cols=80 Identities=23% Similarity=0.337 Sum_probs=72.7
Q ss_pred CCCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC------CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEE
Q psy8956 224 QPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVT 297 (333)
Q Consensus 224 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~------~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~ 297 (333)
.+..+-.|+|.++....++++|.+.|..||.|+++.+..+ +|||+|+|.+.++|++|+..+||..|.|.+|.|.
T Consensus 68 rSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VD 147 (170)
T KOG0130|consen 68 RSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVD 147 (170)
T ss_pred cceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEE
Confidence 3445678999999999999999999999999999988777 8899999999999999999999999999999999
Q ss_pred ecCCCC
Q psy8956 298 LSGTKP 303 (333)
Q Consensus 298 ~a~~~~ 303 (333)
|+=-+.
T Consensus 148 w~Fv~g 153 (170)
T KOG0130|consen 148 WCFVKG 153 (170)
T ss_pred EEEecC
Confidence 985543
No 111
>KOG1365|consensus
Probab=99.18 E-value=1.7e-10 Score=96.27 Aligned_cols=174 Identities=18% Similarity=0.207 Sum_probs=127.7
Q ss_pred cceEEEeCCCCCCCHHHHHHHHhcC----CCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEee
Q psy8956 34 ENELHVNNLEPSVDNQALINEFKKF----GTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITF 109 (333)
Q Consensus 34 ~~~l~V~nLp~~~t~~~l~~~f~~~----g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~ 109 (333)
.-.|..++||+++++.++.++|..- |..+.|.++...+|+..|-|||.|..+++|+.||.. |...++.|.|.+-.
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIElFR 239 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIELFR 239 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHHHH
Confidence 4568899999999999999999632 245677777777899999999999999999999976 44455555554321
Q ss_pred e------------ccCCCCC--CCCCCC------CcccCCCCeEEEeCCCCCCCHHHHHHHhhccCc-eE--EEEEEeCC
Q psy8956 110 V------------ELKPGQR--SKPVGP------EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN-II--EVKIVRDE 166 (333)
Q Consensus 110 ~------------~~~~~~~--~~~~~~------~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~-v~--~~~~~~~~ 166 (333)
+ ...+... ..+... ........+|.+++||...+.++|..+|..|.. +. .+.+..+.
T Consensus 240 STaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~ 319 (508)
T KOG1365|consen 240 STAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNG 319 (508)
T ss_pred HhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcC
Confidence 1 0001111 011111 111223568999999999999999999998864 22 36777777
Q ss_pred CCCceeEEEEEeCCHHHHHHHHHHhCCceeccceeEEEeeee
Q psy8956 167 NGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEI 208 (333)
Q Consensus 167 ~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~ 208 (333)
.|+..|-|||+|.+.+.|..|....+......+.|.|--++.
T Consensus 320 qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S~ 361 (508)
T KOG1365|consen 320 QGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCSV 361 (508)
T ss_pred CCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeeccH
Confidence 899999999999999999999988887777777777766543
No 112
>KOG4208|consensus
Probab=99.13 E-value=2.3e-10 Score=87.94 Aligned_cols=79 Identities=27% Similarity=0.410 Sum_probs=72.2
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhcC-CCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEee
Q psy8956 32 YKENELHVNNLEPSVDNQALINEFKKF-GTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITF 109 (333)
Q Consensus 32 ~~~~~l~V~nLp~~~t~~~l~~~f~~~-g~v~~v~i~~~~-~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~ 109 (333)
...--++++.+|.-+.+..+..+|.++ |.|..+++-++. ||.|+|||||+|.+++.|.-|-+.||+..++++.+.|.+
T Consensus 47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~v 126 (214)
T KOG4208|consen 47 EIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHV 126 (214)
T ss_pred CCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEE
Confidence 344558999999999999999999998 688888887777 999999999999999999999999999999999999998
Q ss_pred e
Q psy8956 110 V 110 (333)
Q Consensus 110 ~ 110 (333)
.
T Consensus 127 m 127 (214)
T KOG4208|consen 127 M 127 (214)
T ss_pred e
Confidence 7
No 113
>KOG0128|consensus
Probab=99.13 E-value=3.8e-12 Score=116.32 Aligned_cols=244 Identities=18% Similarity=0.240 Sum_probs=187.4
Q ss_pred cCcccccceEEEeCCCCCCCHH-HHHHHHhcCCCeeEEEEeeCCCCCccc-EEEEEeCCHHHHHHHHHHhcCCccCCeee
Q psy8956 28 NNKVYKENELHVNNLEPSVDNQ-ALINEFKKFGTLRDVRVARNKNDESRG-FAIIVFNTPAEAKKARVEMNGHLIGSKPV 105 (333)
Q Consensus 28 ~~~~~~~~~l~V~nLp~~~t~~-~l~~~f~~~g~v~~v~i~~~~~~~~~g-~a~v~f~~~e~A~~al~~l~~~~~~g~~i 105 (333)
...+.+.+...+.++.+..... ..+..|..+|.|..+++.......+.+ +.++.+....+++.|.. ..+..+.++..
T Consensus 565 ~~~~~~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~-pa~~~~a~~~~ 643 (881)
T KOG0128|consen 565 YEAPLERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATV-PAGGALANRSA 643 (881)
T ss_pred hhhhhhhhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhccc-ccccccCCccc
Confidence 3345667778889888887555 678889999999999888744333333 78999999999999984 57777888888
Q ss_pred EEeeeccCCCCCCCCCCCCcccCCCCeEEEeCCCCCCCHHHHHHHhhccCceEEEEEE-eCCCCCceeEEEEEeCCHHHH
Q psy8956 106 IITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIV-RDENGKSKGFGFIQFFSYKAA 184 (333)
Q Consensus 106 ~v~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~-~~~~~~~~~~~~v~f~~~~~a 184 (333)
.+..+........... .....-...++|+.+++..+.+.++...|.++|.+..+.+. ....+..+|.||++|..++++
T Consensus 644 av~~ad~~~~~~~~kv-s~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~ 722 (881)
T KOG0128|consen 644 AVGLADAEEKEENFKV-SPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHA 722 (881)
T ss_pred cCCCCCchhhhhccCc-CchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCch
Confidence 8776633332111111 11111123468999999999999999999999987776666 333678899999999999999
Q ss_pred HHHHHHhCCceeccceeEEEeeeecCCCccCCCCCCCCCCCCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC-
Q psy8956 185 EKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD- 263 (333)
Q Consensus 185 ~~a~~~l~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~- 263 (333)
.+|+.......+. ...++|+|.|...|.++++.+++.+|.+.+++++..
T Consensus 723 ~aaV~f~d~~~~g------------------------------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r 772 (881)
T KOG0128|consen 723 GAAVAFRDSCFFG------------------------------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVR 772 (881)
T ss_pred hhhhhhhhhhhhh------------------------------hhhhheeCCCCCCchHHHHhhccccCCccccchhhhh
Confidence 9999764433322 135899999999999999999999999999876655
Q ss_pred ----CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEecCCCC
Q psy8956 264 ----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKP 303 (333)
Q Consensus 264 ----~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~a~~~~ 303 (333)
+|-|+|.|.+..+|.++.....+..+.-+.+.|..+.+.+
T Consensus 773 ~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp~~ 816 (881)
T KOG0128|consen 773 AGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNPER 816 (881)
T ss_pred ccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCCcc
Confidence 7789999999999999999999888888888888866633
No 114
>smart00361 RRM_1 RNA recognition motif.
Probab=99.12 E-value=2.9e-10 Score=75.05 Aligned_cols=56 Identities=25% Similarity=0.502 Sum_probs=48.4
Q ss_pred HHHHHHHhh----ccCCeeEEE-eecC--------CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEE
Q psy8956 242 NSEFEELFA----RFGTITSSS-LVSD--------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVT 297 (333)
Q Consensus 242 ~~~l~~~f~----~~g~v~~v~-i~~~--------~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~ 297 (333)
+++|+++|+ +||.|.++. +..+ +|+|||+|.+.++|.+|+..|||+.++|+.|+++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 567888888 999999884 3221 7899999999999999999999999999999873
No 115
>KOG0132|consensus
Probab=99.12 E-value=2.6e-10 Score=103.43 Aligned_cols=83 Identities=22% Similarity=0.406 Sum_probs=77.9
Q ss_pred CCCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecCCcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEecCCCC
Q psy8956 224 QPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKP 303 (333)
Q Consensus 224 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~a~~~~ 303 (333)
....++||||++|+..+++.||..+|+.||.|.+|.++..+++|||.+.+..+|.+|+..|++..+.++.|+|.||-.+-
T Consensus 417 isV~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G 496 (894)
T KOG0132|consen 417 ISVCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKG 496 (894)
T ss_pred eeEeeeeeeeccccchhhHHHHHHHHHhcccceeEeeccCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCC
Confidence 44457999999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred CCC
Q psy8956 304 GVS 306 (333)
Q Consensus 304 ~~~ 306 (333)
.++
T Consensus 497 ~ks 499 (894)
T KOG0132|consen 497 PKS 499 (894)
T ss_pred cch
Confidence 555
No 116
>KOG0126|consensus
Probab=99.12 E-value=1.2e-11 Score=92.60 Aligned_cols=75 Identities=20% Similarity=0.431 Sum_probs=70.3
Q ss_pred ccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC------CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEecC
Q psy8956 227 RKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSG 300 (333)
Q Consensus 227 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~------~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~a~ 300 (333)
.+.-|||+|||+..++.||..+|++||.|.+|.++++ +||||+.|++..+...|+..|||..|.||.|+|.+..
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~ 113 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVS 113 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecc
Confidence 4568999999999999999999999999999999998 8899999999999999999999999999999997764
Q ss_pred C
Q psy8956 301 T 301 (333)
Q Consensus 301 ~ 301 (333)
.
T Consensus 114 ~ 114 (219)
T KOG0126|consen 114 N 114 (219)
T ss_pred c
Confidence 3
No 117
>KOG0108|consensus
Probab=99.11 E-value=1.7e-10 Score=101.42 Aligned_cols=77 Identities=29% Similarity=0.529 Sum_probs=73.8
Q ss_pred ceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC------CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEecCCC
Q psy8956 229 NKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302 (333)
Q Consensus 229 ~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~------~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~a~~~ 302 (333)
+.+||+|+|+.+++++|..+|+..|.|..+++..| +||||++|.+.++|.+|++.|||..+.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 88999999999999999999999999999999988 899999999999999999999999999999999999887
Q ss_pred CCC
Q psy8956 303 PGV 305 (333)
Q Consensus 303 ~~~ 305 (333)
..+
T Consensus 99 ~~~ 101 (435)
T KOG0108|consen 99 KNA 101 (435)
T ss_pred chh
Confidence 664
No 118
>KOG4454|consensus
Probab=99.09 E-value=2.1e-11 Score=94.11 Aligned_cols=149 Identities=23% Similarity=0.294 Sum_probs=122.9
Q ss_pred ccccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeee
Q psy8956 31 VYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFV 110 (333)
Q Consensus 31 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~~ 110 (333)
+...++|||.|+...++++-|.++|-+.|+|..|.|...+.+..+ ||||.|+++-+..-|++-+||..+.++.+.+.+-
T Consensus 6 ae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r 84 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLR 84 (267)
T ss_pred cchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhcccc
Confidence 456688999999999999999999999999999999988877666 9999999999999999999999999999988754
Q ss_pred ccCCCCCCCCCCCCcccCCCCeEEEeCCCCCCCHHHHHHHhhccCceEEEEEEeCCCCCceeEEEEEeCCHHHHHHHHHH
Q psy8956 111 ELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIE 190 (333)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~ 190 (333)
.-.... -|...++.+.+.+.|+..|++..+++..+..++.+.++++.+......-.+++.
T Consensus 85 ~G~sha--------------------pld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~ 144 (267)
T KOG4454|consen 85 CGNSHA--------------------PLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFALDL 144 (267)
T ss_pred cCCCcc--------------------hhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcCcHHhhh
Confidence 111110 134466788888889999999988888888888999999999888888888877
Q ss_pred hCCceeccce
Q psy8956 191 MNGRMIQHNS 200 (333)
Q Consensus 191 l~~~~~~~~~ 200 (333)
..+....-.+
T Consensus 145 y~~l~~~~~~ 154 (267)
T KOG4454|consen 145 YQGLELFQKK 154 (267)
T ss_pred hcccCcCCCC
Confidence 6655543333
No 119
>KOG0415|consensus
Probab=99.08 E-value=2.5e-10 Score=94.37 Aligned_cols=85 Identities=25% Similarity=0.435 Sum_probs=79.2
Q ss_pred CcCcccccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeee
Q psy8956 27 ENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPV 105 (333)
Q Consensus 27 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~-~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i 105 (333)
..+..-+.+.|||..|.+.+|.++|.-+|+.||.|.++.++++. +|.+..||||+|.+.+++.+|.-.|++..|.++.|
T Consensus 232 dAd~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRI 311 (479)
T KOG0415|consen 232 DADVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRI 311 (479)
T ss_pred ccccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceE
Confidence 34445567899999999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred EEeeec
Q psy8956 106 IITFVE 111 (333)
Q Consensus 106 ~v~~~~ 111 (333)
.|.|+.
T Consensus 312 HVDFSQ 317 (479)
T KOG0415|consen 312 HVDFSQ 317 (479)
T ss_pred Eeehhh
Confidence 999874
No 120
>KOG0112|consensus
Probab=99.07 E-value=1.8e-10 Score=106.01 Aligned_cols=163 Identities=20% Similarity=0.323 Sum_probs=141.9
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHhhccCceEEEEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeccceeEEEeee
Q psy8956 128 YKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207 (333)
Q Consensus 128 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~ 207 (333)
....+|+++|++..+++.+|+..|..+|.|..+.+.....+....++|+.|.+...+..|...+.+..+....+.+.+..
T Consensus 370 ~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~ 449 (975)
T KOG0112|consen 370 RATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQ 449 (975)
T ss_pred hhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCcccccccc
Confidence 34668999999999999999999999999999988877655666799999999999999999998888877766666553
Q ss_pred ecCCCccCCCCCCCCCCCCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecCCcEEEEEECCHHHHHHHHHHhCCC
Q psy8956 208 IVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKHIGFIEFIMPKHATHAVSTMNGH 287 (333)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~~~~~fV~f~~~~~A~~a~~~l~g~ 287 (333)
. ...+.+.+++++++.-+....|..+|..||.|..|.+.....|++|+|.+...|..|+..|.|.
T Consensus 450 ~---------------kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq~yayi~yes~~~aq~a~~~~rga 514 (975)
T KOG0112|consen 450 P---------------KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQPYAYIQYESPPAAQAATHDMRGA 514 (975)
T ss_pred c---------------ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccCCcceeeecccCccchhhHHHHhcC
Confidence 2 2346688999999999999999999999999999999888889999999999999999999999
Q ss_pred eeCC--eeEEEEecCCCCCC
Q psy8956 288 VFKS--KPLKVTLSGTKPGV 305 (333)
Q Consensus 288 ~l~g--~~l~v~~a~~~~~~ 305 (333)
.|+| +.|.|.||...-..
T Consensus 515 p~G~P~~r~rvdla~~~~~~ 534 (975)
T KOG0112|consen 515 PLGGPPRRLRVDLASPPGAT 534 (975)
T ss_pred cCCCCCcccccccccCCCCC
Confidence 9986 78999999875443
No 121
>KOG0129|consensus
Probab=99.06 E-value=7.3e-09 Score=90.32 Aligned_cols=153 Identities=20% Similarity=0.290 Sum_probs=109.9
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHhhccCceEEEEEEeCC----CCCcee---EEEEEeCCHHHHHHHHHHhCCceeccc
Q psy8956 127 QYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE----NGKSKG---FGFIQFFSYKAAEKAIIEMNGRMIQHN 199 (333)
Q Consensus 127 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~----~~~~~~---~~~v~f~~~~~a~~a~~~l~~~~~~~~ 199 (333)
..-++++||++||.++++++|...|..||.+. +...... ....+| |+|+.|.++..++..+..+.. ...
T Consensus 256 ~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~---~~~ 331 (520)
T KOG0129|consen 256 PRYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE---GEG 331 (520)
T ss_pred cccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh---ccc
Confidence 34567899999999999999999999999864 2222111 112345 999999999999988877543 223
Q ss_pred eeEEEeeeecCCCc-c---------CCCCCCCCCCCCccceEEEecCCCCCCHHHHHHHhh-ccCCeeEEEeecC-----
Q psy8956 200 STFVSLAEIVPGKK-V---------FPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFA-RFGTITSSSLVSD----- 263 (333)
Q Consensus 200 ~i~v~~~~~~~~~~-~---------~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~-~~g~v~~v~i~~~----- 263 (333)
...+..+....... . ..-.......-.+.+|+||++||.-++-++|-.+|+ .||.|..+-|..|
T Consensus 332 ~~yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KY 411 (520)
T KOG0129|consen 332 NYYFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKY 411 (520)
T ss_pred ceEEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCC
Confidence 33333322221111 0 000011222345679999999999999999999998 7999999999888
Q ss_pred -CcEEEEEECCHHHHHHHHHH
Q psy8956 264 -KHIGFIEFIMPKHATHAVST 283 (333)
Q Consensus 264 -~~~~fV~f~~~~~A~~a~~~ 283 (333)
+|.|-|+|.+..+=.+|+..
T Consensus 412 PkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 412 PKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CCCcceeeecccHHHHHHHhh
Confidence 88999999999999999884
No 122
>KOG1457|consensus
Probab=98.99 E-value=6.1e-09 Score=80.94 Aligned_cols=82 Identities=27% Similarity=0.463 Sum_probs=70.0
Q ss_pred CCCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC-------CcEEEEEECCHHHHHHHHHHhCCCeeC---Cee
Q psy8956 224 QPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-------KHIGFIEFIMPKHATHAVSTMNGHVFK---SKP 293 (333)
Q Consensus 224 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~-------~~~~fV~f~~~~~A~~a~~~l~g~~l~---g~~ 293 (333)
....-+||||++||.++...+|..+|..|...+...+... +.+||+.|.+.++|..|+..|||..|+ +..
T Consensus 30 ~~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~st 109 (284)
T KOG1457|consen 30 EPGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGST 109 (284)
T ss_pred cccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCce
Confidence 3445689999999999999999999999988877655443 468999999999999999999999996 899
Q ss_pred EEEEecCCCCCC
Q psy8956 294 LKVTLSGTKPGV 305 (333)
Q Consensus 294 l~v~~a~~~~~~ 305 (333)
|++.+|+....+
T Consensus 110 LhiElAKSNtK~ 121 (284)
T KOG1457|consen 110 LHIELAKSNTKR 121 (284)
T ss_pred eEeeehhcCccc
Confidence 999999774433
No 123
>KOG0153|consensus
Probab=98.97 E-value=4.9e-09 Score=86.77 Aligned_cols=79 Identities=18% Similarity=0.336 Sum_probs=70.7
Q ss_pred CCCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecCCcEEEEEECCHHHHHHHHHHhCC-CeeCCeeEEEEecCCC
Q psy8956 224 QPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKHIGFIEFIMPKHATHAVSTMNG-HVFKSKPLKVTLSGTK 302 (333)
Q Consensus 224 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~~~~~fV~f~~~~~A~~a~~~l~g-~~l~g~~l~v~~a~~~ 302 (333)
.+..-.+|||++|...+++.+|++.|-+||.++.+++...++.|||+|.+.++|+.|.+..-+ ..|+|.+|+|.|.+++
T Consensus 224 eD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~~ 303 (377)
T KOG0153|consen 224 EDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGRPK 303 (377)
T ss_pred cccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecccccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCCCc
Confidence 334457999999988999999999999999999999999999999999999999998877655 5579999999999983
No 124
>KOG4661|consensus
Probab=98.97 E-value=2.1e-09 Score=94.35 Aligned_cols=79 Identities=18% Similarity=0.468 Sum_probs=72.7
Q ss_pred ccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC------CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEecC
Q psy8956 227 RKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSG 300 (333)
Q Consensus 227 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~------~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~a~ 300 (333)
-++.|||++|...+.-.||+.+|++||+|...+++.. ++|+||+|.+.++|.++|+.||...|.|+.|.|.-++
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaK 483 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAK 483 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecc
Confidence 4678999999999999999999999999999888876 8899999999999999999999999999999999998
Q ss_pred CCCCC
Q psy8956 301 TKPGV 305 (333)
Q Consensus 301 ~~~~~ 305 (333)
..+.-
T Consensus 484 NEp~G 488 (940)
T KOG4661|consen 484 NEPGG 488 (940)
T ss_pred cCccc
Confidence 76543
No 125
>KOG0132|consensus
Probab=98.96 E-value=1.7e-09 Score=98.32 Aligned_cols=78 Identities=23% Similarity=0.356 Sum_probs=71.8
Q ss_pred CcccccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEe
Q psy8956 29 NKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIIT 108 (333)
Q Consensus 29 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~ 108 (333)
+-..-+++|||++||.++++.||.++|+.||.|.+|.++. ++|+|||.+....+|.+|++.|.+..+.++.|+|.
T Consensus 416 ~isV~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~-----~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~ 490 (894)
T KOG0132|consen 416 HISVCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP-----PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIA 490 (894)
T ss_pred ceeEeeeeeeeccccchhhHHHHHHHHHhcccceeEeecc-----CCceeEEEEeehhHHHHHHHHHhcccccceeeEEe
Confidence 3345578999999999999999999999999999998886 48999999999999999999999999999999999
Q ss_pred eec
Q psy8956 109 FVE 111 (333)
Q Consensus 109 ~~~ 111 (333)
|+.
T Consensus 491 Wa~ 493 (894)
T KOG0132|consen 491 WAV 493 (894)
T ss_pred eec
Confidence 983
No 126
>KOG4307|consensus
Probab=98.96 E-value=9.2e-09 Score=92.42 Aligned_cols=165 Identities=12% Similarity=0.033 Sum_probs=114.0
Q ss_pred EEEeCCCCCCCHHHHHHHhhccCceEEEEEEeCC-CCCceeEEEEEeCCHHHHHHHHHHhCCceeccceeEEEeeeecCC
Q psy8956 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPG 211 (333)
Q Consensus 133 l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~ 211 (333)
+-+.+.+.+....+++++|..- .+....+.... .+...|.++|+|....++++|+.. +.....++.+.+.-......
T Consensus 314 ~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~r-n~~~~~~R~~q~~P~g~~~~ 391 (944)
T KOG4307|consen 314 NNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTR-NPSDDVNRPFQTGPPGNLGR 391 (944)
T ss_pred eeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHhc-CchhhhhcceeecCCCcccc
Confidence 5667888899999999998752 13333333333 233478999999999999999874 44445555555543332222
Q ss_pred Cc----------------cC----------CCCCCCCCCCCccceEEEecCCCCCCHHHHHHHhhccCCeeE-EEeecC-
Q psy8956 212 KK----------------VF----------PKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITS-SSLVSD- 263 (333)
Q Consensus 212 ~~----------------~~----------~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~-v~i~~~- 263 (333)
.. +. ....+......-+.+|||..||..++..++.++|...-.|++ |.+-..
T Consensus 392 ~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P 471 (944)
T KOG4307|consen 392 NGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLP 471 (944)
T ss_pred ccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEeccCC
Confidence 00 00 000001111223578999999999999999999998777776 555443
Q ss_pred ----CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEec
Q psy8956 264 ----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299 (333)
Q Consensus 264 ----~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~a 299 (333)
++.|||.|.+.+++..|...-+.+.++.+.|+|.-.
T Consensus 472 ~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si 511 (944)
T KOG4307|consen 472 TDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSI 511 (944)
T ss_pred cccccchhhheeccccccchhhhcccccccCceEEEeech
Confidence 789999999999999999988888888999999654
No 127
>KOG0112|consensus
Probab=98.93 E-value=1.2e-09 Score=100.86 Aligned_cols=166 Identities=19% Similarity=0.254 Sum_probs=140.2
Q ss_pred cCcccccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEE
Q psy8956 28 NNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVII 107 (333)
Q Consensus 28 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v 107 (333)
.+....+++|+++||+..+++.+|+..|..+|.|.+|.|....-+....||||.|.+..++-.|...+.+..|....+.+
T Consensus 366 ~DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~ 445 (975)
T KOG0112|consen 366 LDDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRI 445 (975)
T ss_pred ccchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCcccc
Confidence 44557789999999999999999999999999999998887765556779999999999999999998888876666666
Q ss_pred eeeccCCCCCCCCCCCCcccCCCCeEEEeCCCCCCCHHHHHHHhhccCceEEEEEEeCCCCCceeEEEEEeCCHHHHHHH
Q psy8956 108 TFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKA 187 (333)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~v~f~~~~~a~~a 187 (333)
.+.. ........++++++..++....+...|..||.|..|.+-+. ..|+|++|.+...++.|
T Consensus 446 glG~-------------~kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg-----q~yayi~yes~~~aq~a 507 (975)
T KOG0112|consen 446 GLGQ-------------PKSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG-----QPYAYIQYESPPAAQAA 507 (975)
T ss_pred cccc-------------cccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccC-----CcceeeecccCccchhh
Confidence 5541 13446778999999999999999999999999998877765 57999999999999999
Q ss_pred HHHhCCceecc--ceeEEEeeeecCC
Q psy8956 188 IIEMNGRMIQH--NSTFVSLAEIVPG 211 (333)
Q Consensus 188 ~~~l~~~~~~~--~~i~v~~~~~~~~ 211 (333)
+..+.+..+++ +.++|.+......
T Consensus 508 ~~~~rgap~G~P~~r~rvdla~~~~~ 533 (975)
T KOG0112|consen 508 THDMRGAPLGGPPRRLRVDLASPPGA 533 (975)
T ss_pred HHHHhcCcCCCCCcccccccccCCCC
Confidence 99999999876 4577777765444
No 128
>KOG0415|consensus
Probab=98.92 E-value=3e-09 Score=88.15 Aligned_cols=81 Identities=25% Similarity=0.420 Sum_probs=74.4
Q ss_pred CCCCCCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC------CcEEEEEECCHHHHHHHHHHhCCCeeCCeeE
Q psy8956 221 PLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294 (333)
Q Consensus 221 ~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~------~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l 294 (333)
.....+|..+|||.-|.+-++++||.-+|+.||.|.++.++++ -.||||+|.+.+++++|.-.|.+..|+++.|
T Consensus 232 dAd~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRI 311 (479)
T KOG0415|consen 232 DADVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRI 311 (479)
T ss_pred ccccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceE
Confidence 3445678899999999999999999999999999999999998 4589999999999999999999999999999
Q ss_pred EEEecCC
Q psy8956 295 KVTLSGT 301 (333)
Q Consensus 295 ~v~~a~~ 301 (333)
.|.|+..
T Consensus 312 HVDFSQS 318 (479)
T KOG0415|consen 312 HVDFSQS 318 (479)
T ss_pred Eeehhhh
Confidence 9999844
No 129
>KOG4661|consensus
Probab=98.90 E-value=7.3e-09 Score=91.03 Aligned_cols=80 Identities=20% Similarity=0.304 Sum_probs=74.5
Q ss_pred ccccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEee
Q psy8956 31 VYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITF 109 (333)
Q Consensus 31 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~-~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~ 109 (333)
..-.+.|||.+|...+-..+|+.+|++||.|+..+++.+. +...++|+||+|.+.++|.+||++|+.+.+.|+-|.|.-
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEk 481 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEK 481 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeee
Confidence 4566789999999999999999999999999999999887 777899999999999999999999999999999999996
Q ss_pred e
Q psy8956 110 V 110 (333)
Q Consensus 110 ~ 110 (333)
+
T Consensus 482 a 482 (940)
T KOG4661|consen 482 A 482 (940)
T ss_pred c
Confidence 6
No 130
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.90 E-value=1.8e-08 Score=69.60 Aligned_cols=76 Identities=18% Similarity=0.272 Sum_probs=65.5
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhc--CCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccC----CeeeEE
Q psy8956 35 NELHVNNLEPSVDNQALINEFKK--FGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIG----SKPVII 107 (333)
Q Consensus 35 ~~l~V~nLp~~~t~~~l~~~f~~--~g~v~~v~i~~~~-~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~----g~~i~v 107 (333)
++|+|+|||...|.++|.+++.. .|...-+.++.|. ++.+.|||||-|.++++|.+..+..+|..|. .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 68999999999999999999866 4577778888888 8899999999999999999999999999875 355556
Q ss_pred eee
Q psy8956 108 TFV 110 (333)
Q Consensus 108 ~~~ 110 (333)
.|+
T Consensus 82 ~yA 84 (97)
T PF04059_consen 82 SYA 84 (97)
T ss_pred ehh
Confidence 555
No 131
>KOG0533|consensus
Probab=98.86 E-value=1.4e-08 Score=82.26 Aligned_cols=81 Identities=27% Similarity=0.421 Sum_probs=75.4
Q ss_pred ccccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeee
Q psy8956 31 VYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFV 110 (333)
Q Consensus 31 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~~ 110 (333)
.....+|+|.|||..++++||+++|..||.+..+.+-+++.|.+.|.|-|.|...++|..|++.++|..+.|+.+.+...
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i 159 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEII 159 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEe
Confidence 34457899999999999999999999999999999999999999999999999999999999999999999999998866
Q ss_pred c
Q psy8956 111 E 111 (333)
Q Consensus 111 ~ 111 (333)
.
T Consensus 160 ~ 160 (243)
T KOG0533|consen 160 S 160 (243)
T ss_pred c
Confidence 3
No 132
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.83 E-value=3.2e-08 Score=64.83 Aligned_cols=68 Identities=25% Similarity=0.319 Sum_probs=48.8
Q ss_pred ceEEEeCCCCCCCHHHHH----HHHhcCC-CeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEee
Q psy8956 35 NELHVNNLEPSVDNQALI----NEFKKFG-TLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITF 109 (333)
Q Consensus 35 ~~l~V~nLp~~~t~~~l~----~~f~~~g-~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~ 109 (333)
..|+|.|||.+.+...|+ ++...|| .|.+| +.+.|+|.|.+.+.|.+|.+.|+|..++|+.|.|+|
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v---------~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~ 73 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV---------SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSF 73 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-----------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEES
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE---------eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEE
Confidence 459999999999887764 5566788 77655 246799999999999999999999999999999998
Q ss_pred ec
Q psy8956 110 VE 111 (333)
Q Consensus 110 ~~ 111 (333)
..
T Consensus 74 ~~ 75 (90)
T PF11608_consen 74 SP 75 (90)
T ss_dssp S-
T ss_pred cC
Confidence 73
No 133
>KOG0128|consensus
Probab=98.78 E-value=5.7e-10 Score=102.40 Aligned_cols=150 Identities=23% Similarity=0.255 Sum_probs=126.8
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeee
Q psy8956 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFV 110 (333)
Q Consensus 32 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~-~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~~ 110 (333)
....++|++||++.+.+.+|...|..+|.+..+++.-.. .++-+|.||++|..+++|.+|+....+. +.|
T Consensus 665 R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~-~~g-------- 735 (881)
T KOG0128|consen 665 RDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSC-FFG-------- 735 (881)
T ss_pred HHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhh-hhh--------
Confidence 455789999999999999999999999988777766222 6788999999999999999999764433 222
Q ss_pred ccCCCCCCCCCCCCcccCCCCeEEEeCCCCCCCHHHHHHHhhccCceEEEEEEeCCCCCceeEEEEEeCCHHHHHHHHHH
Q psy8956 111 ELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIE 190 (333)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~ 190 (333)
...++|.|.|+.-|.++++.++..+|++....++....|+.+|.+++.|.++.++.+++..
T Consensus 736 -------------------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s 796 (881)
T KOG0128|consen 736 -------------------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVAS 796 (881)
T ss_pred -------------------hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhccc
Confidence 3458899999999999999999999999999988888999999999999999999999887
Q ss_pred hCCceeccceeEEEeeeec
Q psy8956 191 MNGRMIQHNSTFVSLAEIV 209 (333)
Q Consensus 191 l~~~~~~~~~i~v~~~~~~ 209 (333)
.....+..+.+.+..+.+.
T Consensus 797 ~d~~~~rE~~~~v~vsnp~ 815 (881)
T KOG0128|consen 797 VDVAGKRENNGEVQVSNPE 815 (881)
T ss_pred chhhhhhhcCccccccCCc
Confidence 7777777777777775553
No 134
>KOG4454|consensus
Probab=98.78 E-value=3.2e-09 Score=82.19 Aligned_cols=144 Identities=21% Similarity=0.331 Sum_probs=121.2
Q ss_pred ccCCCCeEEEeCCCCCCCHHHHHHHhhccCceEEEEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeccceeEEEe
Q psy8956 126 KQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL 205 (333)
Q Consensus 126 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~~~~~i~v~~ 205 (333)
..+..++|+|.|+...++++-|.++|-..|+|.++.+.....+..+ ||||.|.++.....|+.-++|..+.+..+.+++
T Consensus 5 aae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~ 83 (267)
T KOG4454|consen 5 AAEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTL 83 (267)
T ss_pred CcchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhccc
Confidence 3456789999999999999999999999999999999998888877 999999999999999999999888888876665
Q ss_pred eeecCCCccCCCCCCCCCCCCccceEEEec----CCCCCCHHHHHHHhhccCCeeEEEeecC-----CcEEEEEECCHHH
Q psy8956 206 AEIVPGKKVFPKVKPPLLQPARKNKIFVAN----LPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKH 276 (333)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~n----l~~~~~~~~l~~~f~~~g~v~~v~i~~~-----~~~~fV~f~~~~~ 276 (333)
- .++ +...++.+.+...|+.-|.+..+++..+ +.++++.+-...+
T Consensus 84 r--------------------------~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~ 137 (267)
T KOG4454|consen 84 R--------------------------CGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCA 137 (267)
T ss_pred c--------------------------cCCCcchhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhc
Confidence 3 233 4556888889999999999999988876 6688999888888
Q ss_pred HHHHHHHhCCCeeCCeeEEE
Q psy8956 277 ATHAVSTMNGHVFKSKPLKV 296 (333)
Q Consensus 277 A~~a~~~l~g~~l~g~~l~v 296 (333)
.-.++....+....-+++.+
T Consensus 138 ~P~~~~~y~~l~~~~~~~~~ 157 (267)
T KOG4454|consen 138 VPFALDLYQGLELFQKKVTI 157 (267)
T ss_pred CcHHhhhhcccCcCCCCccc
Confidence 88888888777655555444
No 135
>KOG4208|consensus
Probab=98.74 E-value=4.5e-08 Score=75.50 Aligned_cols=76 Identities=25% Similarity=0.394 Sum_probs=68.9
Q ss_pred ccceEEEecCCCCCCHHHHHHHhhcc-CCeeEEEeecC------CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEec
Q psy8956 227 RKNKIFVANLPSNINNSEFEELFARF-GTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299 (333)
Q Consensus 227 ~~~~l~v~nl~~~~~~~~l~~~f~~~-g~v~~v~i~~~------~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~a 299 (333)
....+++..+|..+.+..+..+|.+| |.|..+++.+. +|||||+|++.+.|.-|-+.||++.|.|+.|.|.+-
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vm 127 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVM 127 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEe
Confidence 45678999999999999999999998 66788888555 899999999999999999999999999999999998
Q ss_pred CCC
Q psy8956 300 GTK 302 (333)
Q Consensus 300 ~~~ 302 (333)
.+.
T Consensus 128 ppe 130 (214)
T KOG4208|consen 128 PPE 130 (214)
T ss_pred Cch
Confidence 876
No 136
>KOG4210|consensus
Probab=98.73 E-value=1.4e-08 Score=85.45 Aligned_cols=178 Identities=19% Similarity=0.225 Sum_probs=135.0
Q ss_pred ccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeec
Q psy8956 33 KENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVE 111 (333)
Q Consensus 33 ~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~-~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~~~ 111 (333)
...+.+++++...+.+++...++..+|......+.... ...++|++++.|...+.+..|+.........++.+......
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 46789999999999999899999999976666555544 77899999999999999999996543335555555444332
Q ss_pred cCCCCCCCCCCCCcccCCCCeEEEeCCCCCCCHHHHHHHhhccCceEEEEEEeCC-CCCceeEEEEEeCCHHHHHHHHHH
Q psy8956 112 LKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIE 190 (333)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~~~~~v~f~~~~~a~~a~~~ 190 (333)
......................++.+++..++.++|..+|..+|.+..+.+...+ ++..+++++++|.....+..++..
T Consensus 167 ~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~ 246 (285)
T KOG4210|consen 167 RRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND 246 (285)
T ss_pred cccccccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc
Confidence 2221111111122222233344599999999999999999999999999988876 788999999999999999999987
Q ss_pred hCCceeccceeEEEeeeecCC
Q psy8956 191 MNGRMIQHNSTFVSLAEIVPG 211 (333)
Q Consensus 191 l~~~~~~~~~i~v~~~~~~~~ 211 (333)
+...+.++++.+........
T Consensus 247 -~~~~~~~~~~~~~~~~~~~~ 266 (285)
T KOG4210|consen 247 -QTRSIGGRPLRLEEDEPRPK 266 (285)
T ss_pred -ccCcccCcccccccCCCCcc
Confidence 77889999998888765544
No 137
>KOG0153|consensus
Probab=98.73 E-value=5.1e-08 Score=80.90 Aligned_cols=76 Identities=22% Similarity=0.353 Sum_probs=67.0
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCC-ccCCeeeEEeee
Q psy8956 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH-LIGSKPVIITFV 110 (333)
Q Consensus 32 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~-~~~g~~i~v~~~ 110 (333)
....+|||+||-..+++.+|++.|-+||+|.++.+... ++.|||+|.+.++|..|...+-+. .+.|++|+|.|.
T Consensus 226 ~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~-----~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg 300 (377)
T KOG0153|consen 226 TSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR-----KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWG 300 (377)
T ss_pred cceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc-----cccceeeehhhHHHHHHHHhhcceeeecceEEEEEeC
Confidence 44567999999999999999999999999999988874 678999999999999998875555 589999999998
Q ss_pred cc
Q psy8956 111 EL 112 (333)
Q Consensus 111 ~~ 112 (333)
..
T Consensus 301 ~~ 302 (377)
T KOG0153|consen 301 RP 302 (377)
T ss_pred CC
Confidence 54
No 138
>KOG0151|consensus
Probab=98.72 E-value=5.1e-08 Score=88.02 Aligned_cols=93 Identities=19% Similarity=0.374 Sum_probs=82.0
Q ss_pred CCCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC---------CcEEEEEECCHHHHHHHHHHhCCCeeCCeeE
Q psy8956 224 QPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD---------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294 (333)
Q Consensus 224 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~---------~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l 294 (333)
..+.++.|||+|+++.++++.|...|+.||+|..++|+-. +.++||-|-+..+|++|++.|+|..+.+..+
T Consensus 170 gDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~ 249 (877)
T KOG0151|consen 170 GDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEM 249 (877)
T ss_pred CCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeee
Confidence 3566788999999999999999999999999999988744 7799999999999999999999999999999
Q ss_pred EEEecCCCCCCCCCCCCCCCCC
Q psy8956 295 KVTLSGTKPGVSITNPTKAPKK 316 (333)
Q Consensus 295 ~v~~a~~~~~~~~~~~~~~~~~ 316 (333)
++-|++.-+-...+.+.+++..
T Consensus 250 K~gWgk~V~ip~~p~~ipp~~h 271 (877)
T KOG0151|consen 250 KLGWGKAVPIPNIPIYIPPPLH 271 (877)
T ss_pred eeccccccccCCccccCCChhh
Confidence 9999988777776666665543
No 139
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.70 E-value=1.5e-07 Score=61.69 Aligned_cols=71 Identities=24% Similarity=0.350 Sum_probs=49.0
Q ss_pred ceEEEecCCCCCCHHH----HHHHhhccCC-eeEEEeecCCcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEecCCCC
Q psy8956 229 NKIFVANLPSNINNSE----FEELFARFGT-ITSSSLVSDKHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKP 303 (333)
Q Consensus 229 ~~l~v~nl~~~~~~~~----l~~~f~~~g~-v~~v~i~~~~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~a~~~~ 303 (333)
..|+|.|||...+... |+.++..+|. |..|. .+.|+|.|.+.+.|.+|.+.|+|..+.|.+|.|+|.+...
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~~~r 78 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSPKNR 78 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS--S-
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcCCcc
Confidence 4689999999888755 5677778875 55442 5899999999999999999999999999999999996644
No 140
>KOG0226|consensus
Probab=98.63 E-value=4e-08 Score=78.03 Aligned_cols=164 Identities=24% Similarity=0.326 Sum_probs=117.3
Q ss_pred EEEeCCCCCCCHHH---HHHHhhccCceEEEEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeccceeEEEeeeec
Q psy8956 133 VFVKNLVETVDEEE---LKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIV 209 (333)
Q Consensus 133 l~v~~l~~~~~~~~---l~~~f~~~g~v~~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~ 209 (333)
.++.++-..+..+- +...|+.+..+....++....+.-.+++|+.|.....-.++...-++..+....++....+.-
T Consensus 99 p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gtsw 178 (290)
T KOG0226|consen 99 PFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGTSW 178 (290)
T ss_pred ccccccccccCCCCCCcchhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccccCcceeecccccc
Confidence 34444433333333 245566666666667777766777889999888877777776665666666666544433222
Q ss_pred CCCccCCCCCCCCCCCCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC------CcEEEEEECCHHHHHHHHHH
Q psy8956 210 PGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVST 283 (333)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~------~~~~fV~f~~~~~A~~a~~~ 283 (333)
... ....-......||++.|...++++-|...|.+|-.....+++++ +||+||.|.+..++.+||..
T Consensus 179 edP-------sl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmre 251 (290)
T KOG0226|consen 179 EDP-------SLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMRE 251 (290)
T ss_pred CCc-------ccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHh
Confidence 211 11112234468999999999999999999999998877777776 88999999999999999999
Q ss_pred hCCCeeCCeeEEEEecCCCC
Q psy8956 284 MNGHVFKSKPLKVTLSGTKP 303 (333)
Q Consensus 284 l~g~~l~g~~l~v~~a~~~~ 303 (333)
|+|..++.++|+++-+.-++
T Consensus 252 m~gkyVgsrpiklRkS~wke 271 (290)
T KOG0226|consen 252 MNGKYVGSRPIKLRKSEWKE 271 (290)
T ss_pred hcccccccchhHhhhhhHHh
Confidence 99999999999987654443
No 141
>KOG0533|consensus
Probab=98.63 E-value=1.8e-07 Score=75.91 Aligned_cols=78 Identities=27% Similarity=0.484 Sum_probs=69.4
Q ss_pred CccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC-----CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEecC
Q psy8956 226 ARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSG 300 (333)
Q Consensus 226 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~-----~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~a~ 300 (333)
.....|+|.|||+.+.++||+++|..||.++.+-+-.+ .|.|-|.|...++|.+|++.+||..++|+.+++....
T Consensus 81 ~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~ 160 (243)
T KOG0533|consen 81 TRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIIS 160 (243)
T ss_pred CCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEec
Confidence 34578999999999999999999999998888777666 6789999999999999999999999999999998776
Q ss_pred CCC
Q psy8956 301 TKP 303 (333)
Q Consensus 301 ~~~ 303 (333)
...
T Consensus 161 ~~~ 163 (243)
T KOG0533|consen 161 SPS 163 (243)
T ss_pred Ccc
Confidence 543
No 142
>KOG4660|consensus
Probab=98.62 E-value=3.7e-08 Score=86.78 Aligned_cols=73 Identities=23% Similarity=0.423 Sum_probs=67.0
Q ss_pred CCCCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC-CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEE
Q psy8956 223 LQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLK 295 (333)
Q Consensus 223 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~-~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~ 295 (333)
....+.++|+|-|||..++.++|..+|+.||.|+.|+.-.. ++.+||+|.+..+|++|++.|++..|.|+.|+
T Consensus 70 ~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 70 EKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 34556789999999999999999999999999999776555 88999999999999999999999999999998
No 143
>KOG4210|consensus
Probab=98.57 E-value=8.7e-08 Score=80.67 Aligned_cols=174 Identities=19% Similarity=0.241 Sum_probs=132.7
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHhhccCceEEEEEEe-CCCCCceeEEEEEeCCHHHHHHHHHHhCCceeccceeEEEeee
Q psy8956 129 KKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVR-DENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207 (333)
Q Consensus 129 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~-~~~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~ 207 (333)
...+.+++++..++.+.+...++..+|......+.. ......++++++.|...+.+..++.........++.+...+..
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 466789999988888888888888888766655554 3356789999999999999999998655556666666555544
Q ss_pred ecCCCccCCCCCCCCCCCCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC------CcEEEEEECCHHHHHHHH
Q psy8956 208 IVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAV 281 (333)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~------~~~~fV~f~~~~~A~~a~ 281 (333)
.......... .........+..++.+++..+++++|+..|..+|.|..+++... .++++|.|.....+..++
T Consensus 167 ~~~~~~~n~~--~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~ 244 (285)
T KOG4210|consen 167 RRGLRPKNKL--SRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLAL 244 (285)
T ss_pred cccccccchh--cccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHh
Confidence 4331111110 01112223344559999999999999999999999999999877 779999999999999999
Q ss_pred HHhCCCeeCCeeEEEEecCCCCCC
Q psy8956 282 STMNGHVFKSKPLKVTLSGTKPGV 305 (333)
Q Consensus 282 ~~l~g~~l~g~~l~v~~a~~~~~~ 305 (333)
.. .++.++|+++.+.+....+..
T Consensus 245 ~~-~~~~~~~~~~~~~~~~~~~~~ 267 (285)
T KOG4210|consen 245 ND-QTRSIGGRPLRLEEDEPRPKS 267 (285)
T ss_pred hc-ccCcccCcccccccCCCCccc
Confidence 97 889999999999999887554
No 144
>KOG4676|consensus
Probab=98.56 E-value=3.4e-08 Score=83.08 Aligned_cols=198 Identities=15% Similarity=0.116 Sum_probs=123.9
Q ss_pred eEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCC----CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeec
Q psy8956 36 ELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK----NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVE 111 (333)
Q Consensus 36 ~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~----~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~~~ 111 (333)
.|.|.||.+++|.+.+..+|...|.|.++.++.+. -......|||.|.+...+..| ++|.++.+-|+.+.|.+..
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~va-QhLtntvfvdraliv~p~~ 87 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVA-QHLTNTVFVDRALIVRPYG 87 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHH-hhhccceeeeeeEEEEecC
Confidence 69999999999999999999999999999998854 134667899999999999988 5899998888888877541
Q ss_pred cCCCCCCCCCCCCcccCCCCeEEEeCCCCCCCHHHHHHHhhccCceEEEEEEeCCCCCceeEEEEEeCCHHHHHHHHHHh
Q psy8956 112 LKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEM 191 (333)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l 191 (333)
.... .+. ..|..++.-..+.-...+
T Consensus 88 ~~~~----------------------------p~r--~af~~l~~~navprll~p------------------------- 112 (479)
T KOG4676|consen 88 DEVI----------------------------PDR--FAFVELADQNAVPRLLPP------------------------- 112 (479)
T ss_pred CCCC----------------------------ccH--HHHHhcCcccccccccCC-------------------------
Confidence 1110 011 022222211111000000
Q ss_pred CCceeccceeEEEeeeecCC--CccCCCCCCCCCCCCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC--CcEE
Q psy8956 192 NGRMIQHNSTFVSLAEIVPG--KKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD--KHIG 267 (333)
Q Consensus 192 ~~~~~~~~~i~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~--~~~~ 267 (333)
+|..+....++..-..+... ....+........+.-.+++++++|+..+...++.+.|+.+|.|....+-.. ..+|
T Consensus 113 dg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask~~s~~c 192 (479)
T KOG4676|consen 113 DGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILPESGESFERKGEVSYAHTASKSRSSSC 192 (479)
T ss_pred CCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhccCCCcch
Confidence 11111111111000000000 0000000011111222378999999999999999999999999977665544 6688
Q ss_pred EEEECCHHHHHHHHHHhCCCeeC
Q psy8956 268 FIEFIMPKHATHAVSTMNGHVFK 290 (333)
Q Consensus 268 fV~f~~~~~A~~a~~~l~g~~l~ 290 (333)
.++|....+...|+. ++|+.+.
T Consensus 193 ~~sf~~qts~~halr-~~gre~k 214 (479)
T KOG4676|consen 193 SHSFRKQTSSKHALR-SHGRERK 214 (479)
T ss_pred hhhHhhhhhHHHHHH-hcchhhh
Confidence 899999888888888 6677665
No 145
>KOG0116|consensus
Probab=98.55 E-value=2e-07 Score=81.81 Aligned_cols=79 Identities=19% Similarity=0.293 Sum_probs=67.0
Q ss_pred ccccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEee
Q psy8956 31 VYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITF 109 (333)
Q Consensus 31 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~-~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~ 109 (333)
...-..|||+|||.++++++|+++|..||+|....|.... .+.+.+||||+|.+.++++.|++. +-..+.++++.|+-
T Consensus 285 ~~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Vee 363 (419)
T KOG0116|consen 285 RADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEE 363 (419)
T ss_pred eecccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEe
Confidence 3444559999999999999999999999999887777655 444559999999999999999976 57779999999983
Q ss_pred e
Q psy8956 110 V 110 (333)
Q Consensus 110 ~ 110 (333)
-
T Consensus 364 k 364 (419)
T KOG0116|consen 364 K 364 (419)
T ss_pred c
Confidence 3
No 146
>KOG4209|consensus
Probab=98.53 E-value=1.7e-07 Score=76.19 Aligned_cols=82 Identities=21% Similarity=0.323 Sum_probs=74.7
Q ss_pred cCcccccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeE
Q psy8956 28 NNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVI 106 (333)
Q Consensus 28 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~-~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~ 106 (333)
.......+.+||+|+...+|.+++...|+.||.+..+.+..+. .+.++|||||+|.+.+.+..++. |+|..+.|+.+.
T Consensus 95 ~~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~ 173 (231)
T KOG4209|consen 95 RQKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIE 173 (231)
T ss_pred hhhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccce
Confidence 3445667889999999999999999999999999999999999 66799999999999999999997 999999999999
Q ss_pred Eeee
Q psy8956 107 ITFV 110 (333)
Q Consensus 107 v~~~ 110 (333)
+.+.
T Consensus 174 vt~~ 177 (231)
T KOG4209|consen 174 VTLK 177 (231)
T ss_pred eeee
Confidence 9865
No 147
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.51 E-value=9.4e-07 Score=61.17 Aligned_cols=73 Identities=16% Similarity=0.312 Sum_probs=61.8
Q ss_pred ceEEEecCCCCCCHHHHHHHhhc--cCCeeEEEeecC------CcEEEEEECCHHHHHHHHHHhCCCeeC----CeeEEE
Q psy8956 229 NKIFVANLPSNINNSEFEELFAR--FGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFK----SKPLKV 296 (333)
Q Consensus 229 ~~l~v~nl~~~~~~~~l~~~f~~--~g~v~~v~i~~~------~~~~fV~f~~~~~A~~a~~~l~g~~l~----g~~l~v 296 (333)
+||+|.|||...+.++|.+++.. .|....+.++.| .|||||.|.+++.|.+-.+.++|..+. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 68999999999999999999875 344555566655 889999999999999999999999985 577888
Q ss_pred EecCC
Q psy8956 297 TLSGT 301 (333)
Q Consensus 297 ~~a~~ 301 (333)
.+|+-
T Consensus 82 ~yAri 86 (97)
T PF04059_consen 82 SYARI 86 (97)
T ss_pred ehhHh
Confidence 88864
No 148
>KOG0226|consensus
Probab=98.49 E-value=1.8e-07 Score=74.35 Aligned_cols=167 Identities=25% Similarity=0.381 Sum_probs=122.9
Q ss_pred eEEEeCCCCCCCHHH-H--HHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeecc
Q psy8956 36 ELHVNNLEPSVDNQA-L--INEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVEL 112 (333)
Q Consensus 36 ~l~V~nLp~~~t~~~-l--~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~~~~ 112 (333)
..++.++-..+..+- | ...|..|......+++++..+.-.+++|+.|.....-.++-..-+++.+.-..++..-.
T Consensus 98 ~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~g-- 175 (290)
T KOG0226|consen 98 RPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAG-- 175 (290)
T ss_pred cccccccccccCCCCCCcchhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccccCcceeeccc--
Confidence 345566555554433 3 67788888777778888887788999999988777666665444444555554443311
Q ss_pred CCCCCCCCCCCCcccCCCCeEEEeCCCCCCCHHHHHHHhhccCceEEEEEEeCC-CCCceeEEEEEeCCHHHHHHHHHHh
Q psy8956 113 KPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEM 191 (333)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~~~~~v~f~~~~~a~~a~~~l 191 (333)
.... .+ ...+-......||.+.|...++.+.+...|.+|-.-..-+++++. +|+++||+||-|.+..++..|++++
T Consensus 176 tswe--dP-sl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem 252 (290)
T KOG0226|consen 176 TSWE--DP-SLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREM 252 (290)
T ss_pred cccC--Cc-ccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhh
Confidence 1111 11 122233456789999999999999999999999887777788776 8999999999999999999999999
Q ss_pred CCceeccceeEEEeee
Q psy8956 192 NGRMIQHNSTFVSLAE 207 (333)
Q Consensus 192 ~~~~~~~~~i~v~~~~ 207 (333)
+|..++.+.|.+..+.
T Consensus 253 ~gkyVgsrpiklRkS~ 268 (290)
T KOG0226|consen 253 NGKYVGSRPIKLRKSE 268 (290)
T ss_pred cccccccchhHhhhhh
Confidence 9999999998776653
No 149
>KOG2193|consensus
Probab=98.44 E-value=3e-08 Score=84.22 Aligned_cols=155 Identities=21% Similarity=0.328 Sum_probs=123.8
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhccCceEEEEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhCCce-eccceeEEEeeeec
Q psy8956 131 DKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRM-IQHNSTFVSLAEIV 209 (333)
Q Consensus 131 ~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~~~~-~~~~~i~v~~~~~~ 209 (333)
+.++++||.+.++..++..+|.....-.+-.++- ..+|+|+.+.+...|.+|++.+++.. +.|..+.+..+..+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~-----k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~k 76 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV-----KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPK 76 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee-----ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhH
Confidence 5689999999999999999998652211112222 25899999999999999999998866 78888888776554
Q ss_pred CCCccCCCCCCCCCCCCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC-Cc--EEEEEECCHHHHHHHHHHhCC
Q psy8956 210 PGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-KH--IGFIEFIMPKHATHAVSTMNG 286 (333)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~-~~--~~fV~f~~~~~A~~a~~~l~g 286 (333)
.. .++.+-|.|+|....++-+-.++.+||.|+.+....- .. ..-|+|.+.+.+.-|+..|+|
T Consensus 77 kq---------------rsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~~~~~ai~kl~g 141 (584)
T KOG2193|consen 77 KQ---------------RSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQQQHRQAIHKLNG 141 (584)
T ss_pred HH---------------HhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 33 4567899999999999999999999999998865433 22 334678999999999999999
Q ss_pred CeeCCeeEEEEecCCCCCC
Q psy8956 287 HVFKSKPLKVTLSGTKPGV 305 (333)
Q Consensus 287 ~~l~g~~l~v~~a~~~~~~ 305 (333)
..+....+++.|-......
T Consensus 142 ~Q~en~~~k~~YiPdeq~~ 160 (584)
T KOG2193|consen 142 PQLENQHLKVGYIPDEQNA 160 (584)
T ss_pred hHhhhhhhhcccCchhhhh
Confidence 9999999999998665433
No 150
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.42 E-value=9.5e-07 Score=62.73 Aligned_cols=71 Identities=17% Similarity=0.357 Sum_probs=47.1
Q ss_pred ceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecCCcEEEEEECCHHHHHHHHHHhCCC-----eeCCeeEEEEec
Q psy8956 229 NKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKHIGFIEFIMPKHATHAVSTMNGH-----VFKSKPLKVTLS 299 (333)
Q Consensus 229 ~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~~~~~fV~f~~~~~A~~a~~~l~g~-----~l~g~~l~v~~a 299 (333)
+.|.+.+++..++.++|++.|++||.|..|.+..+...|+|.|.+.++|.+|++.+.-. .+.+..+++..-
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~vL 77 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEVL 77 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE--
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEEC
Confidence 57899999999999999999999999999999988889999999999999999987754 456666665543
No 151
>KOG0151|consensus
Probab=98.37 E-value=2e-06 Score=78.02 Aligned_cols=77 Identities=27% Similarity=0.485 Sum_probs=69.2
Q ss_pred cceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCCC----CCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEee
Q psy8956 34 ENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKN----DESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITF 109 (333)
Q Consensus 34 ~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~~----~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~ 109 (333)
...|||+||++.++++.|...|..||+|.+++|+..++ .+....+||-|-+..+|.+|++.|+|..+.+..+++-|
T Consensus 174 TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~gW 253 (877)
T KOG0151|consen 174 TTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLGW 253 (877)
T ss_pred ccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeeecc
Confidence 45699999999999999999999999999999997663 33566799999999999999999999999999998887
Q ss_pred e
Q psy8956 110 V 110 (333)
Q Consensus 110 ~ 110 (333)
.
T Consensus 254 g 254 (877)
T KOG0151|consen 254 G 254 (877)
T ss_pred c
Confidence 7
No 152
>KOG0116|consensus
Probab=98.28 E-value=2.6e-06 Score=74.94 Aligned_cols=75 Identities=27% Similarity=0.418 Sum_probs=65.1
Q ss_pred cceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC------CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEecCC
Q psy8956 228 KNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGT 301 (333)
Q Consensus 228 ~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~------~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~a~~ 301 (333)
..+|||.|||.+++..+|+++|.+||.|+...|... .+||||+|.+.+++..|+++ +-..++|++|.|...+.
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKRP 366 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEeccc
Confidence 345999999999999999999999999998777654 27999999999999999995 57788999999988766
Q ss_pred CC
Q psy8956 302 KP 303 (333)
Q Consensus 302 ~~ 303 (333)
..
T Consensus 367 ~~ 368 (419)
T KOG0116|consen 367 GF 368 (419)
T ss_pred cc
Confidence 43
No 153
>KOG2193|consensus
Probab=98.21 E-value=1.3e-07 Score=80.49 Aligned_cols=154 Identities=18% Similarity=0.244 Sum_probs=120.7
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhcCC-CeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCc-cCCeeeEEeeecc
Q psy8956 35 NELHVNNLEPSVDNQALINEFKKFG-TLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHL-IGSKPVIITFVEL 112 (333)
Q Consensus 35 ~~l~V~nLp~~~t~~~l~~~f~~~g-~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~-~~g~~i~v~~~~~ 112 (333)
+++|++||.+.++.++|..+|...- +...-.+++ .|||||.+++..-|.+|++.++|+. +.|+.+.+..+..
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k------~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK------SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeee------cceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 5699999999999999999997642 111111222 6899999999999999999999995 8999999987632
Q ss_pred CCCCCCCCCCCCcccCCCCeEEEeCCCCCCCHHHHHHHhhccCceEEEEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhC
Q psy8956 113 KPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMN 192 (333)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~ 192 (333)
+. ..++++.++++|+..--+-+..++..||.+..|...... ......-++|...+.+..|+..++
T Consensus 76 kk-------------qrsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~--~etavvnvty~~~~~~~~ai~kl~ 140 (584)
T KOG2193|consen 76 KK-------------QRSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTD--SETAVVNVTYSAQQQHRQAIHKLN 140 (584)
T ss_pred HH-------------HHhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccc--hHHHHHHHHHHHHHHHHHHHHhhc
Confidence 22 235668999999999999999999999999988664432 112233467888999999999999
Q ss_pred CceeccceeEEEeeeec
Q psy8956 193 GRMIQHNSTFVSLAEIV 209 (333)
Q Consensus 193 ~~~~~~~~i~v~~~~~~ 209 (333)
+..+.+..+.+.+....
T Consensus 141 g~Q~en~~~k~~YiPde 157 (584)
T KOG2193|consen 141 GPQLENQHLKVGYIPDE 157 (584)
T ss_pred chHhhhhhhhcccCchh
Confidence 99999988888776543
No 154
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=98.17 E-value=7.7e-06 Score=67.88 Aligned_cols=88 Identities=20% Similarity=0.422 Sum_probs=67.5
Q ss_pred cCcCCcCcccccceEEEeCCCCCCCHHHH------HHHHhcCCCeeEEEEeeCC-C-CCcccEE--EEEeCCHHHHHHHH
Q psy8956 23 RSNKENNKVYKENELHVNNLEPSVDNQAL------INEFKKFGTLRDVRVARNK-N-DESRGFA--IIVFNTPAEAKKAR 92 (333)
Q Consensus 23 ~~~~~~~~~~~~~~l~V~nLp~~~t~~~l------~~~f~~~g~v~~v~i~~~~-~-~~~~g~a--~v~f~~~e~A~~al 92 (333)
|+.=+.-.+.-.+-+||-+||+.+..+++ .++|.+||.|..|-+.+.. . ....+++ ||+|.+.|+|.+|+
T Consensus 103 rkhlsniRVvQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcI 182 (480)
T COG5175 103 RKHLSNIRVVQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCI 182 (480)
T ss_pred ccccccceeeecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHH
Confidence 33333344555677999999999877763 4789999999987666544 1 1122334 99999999999999
Q ss_pred HHhcCCccCCeeeEEeee
Q psy8956 93 VEMNGHLIGSKPVIITFV 110 (333)
Q Consensus 93 ~~l~~~~~~g~~i~v~~~ 110 (333)
...+|..+.|+.|+..|.
T Consensus 183 a~vDgs~~DGr~lkatYG 200 (480)
T COG5175 183 AEVDGSLLDGRVLKATYG 200 (480)
T ss_pred HHhccccccCceEeeecC
Confidence 999999999999999865
No 155
>KOG4209|consensus
Probab=98.16 E-value=8.6e-06 Score=66.41 Aligned_cols=78 Identities=21% Similarity=0.330 Sum_probs=71.4
Q ss_pred CCCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC------CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEE
Q psy8956 224 QPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVT 297 (333)
Q Consensus 224 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~------~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~ 297 (333)
.....+.+|++|+.+.++.+++...|+.||.+..+.+..+ ++++||+|.+.+.+..|+. |+|..|.|+.+.|.
T Consensus 97 ~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt 175 (231)
T KOG4209|consen 97 KEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVT 175 (231)
T ss_pred hccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceee
Confidence 3345678999999999999999999999999998888887 7799999999999999999 99999999999999
Q ss_pred ecCCC
Q psy8956 298 LSGTK 302 (333)
Q Consensus 298 ~a~~~ 302 (333)
+....
T Consensus 176 ~~r~~ 180 (231)
T KOG4209|consen 176 LKRTN 180 (231)
T ss_pred eeeee
Confidence 98776
No 156
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=98.08 E-value=1.1e-05 Score=67.07 Aligned_cols=76 Identities=21% Similarity=0.430 Sum_probs=64.6
Q ss_pred ceEEEecCCCCCCHHHH------HHHhhccCCeeEEEeecC-------Cc--EEEEEECCHHHHHHHHHHhCCCeeCCee
Q psy8956 229 NKIFVANLPSNINNSEF------EELFARFGTITSSSLVSD-------KH--IGFIEFIMPKHATHAVSTMNGHVFKSKP 293 (333)
Q Consensus 229 ~~l~v~nl~~~~~~~~l------~~~f~~~g~v~~v~i~~~-------~~--~~fV~f~~~~~A~~a~~~l~g~~l~g~~ 293 (333)
.-+||-+|+..+..++. .++|++||.|..|.+.+. .+ -.||+|.+.++|.+++...+|..++||.
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~ 194 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRV 194 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCce
Confidence 45899999988877762 578999999999988766 22 3499999999999999999999999999
Q ss_pred EEEEecCCCCC
Q psy8956 294 LKVTLSGTKPG 304 (333)
Q Consensus 294 l~v~~a~~~~~ 304 (333)
|+..|...+-.
T Consensus 195 lkatYGTTKYC 205 (480)
T COG5175 195 LKATYGTTKYC 205 (480)
T ss_pred EeeecCchHHH
Confidence 99999877643
No 157
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.94 E-value=3.5e-05 Score=54.75 Aligned_cols=59 Identities=22% Similarity=0.343 Sum_probs=39.0
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCC
Q psy8956 35 NELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98 (333)
Q Consensus 35 ~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~ 98 (333)
..|.|.|++..++-++|++.|+.||.|..|.+.+. ...|||.|.++++|+.|++.+...
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G-----~~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG-----DTEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT------SEEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC-----CCEEEEEECCcchHHHHHHHHHhc
Confidence 35889999999999999999999999988877654 346999999999999999987554
No 158
>KOG3152|consensus
Probab=97.80 E-value=1.5e-05 Score=63.82 Aligned_cols=73 Identities=19% Similarity=0.239 Sum_probs=61.8
Q ss_pred ccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCC-C--------CC----cccEEEEEeCCHHHHHHHHHHhcCCc
Q psy8956 33 KENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-N--------DE----SRGFAIIVFNTPAEAKKARVEMNGHL 99 (333)
Q Consensus 33 ~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~-~--------~~----~~g~a~v~f~~~e~A~~al~~l~~~~ 99 (333)
+.-.||+++||+.+...-|+++|..||.|-.|.+-+.. + |. ...-++|+|.+...|+++-..||++.
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 45689999999999999999999999999988776654 3 22 23348999999999999999999999
Q ss_pred cCCeee
Q psy8956 100 IGSKPV 105 (333)
Q Consensus 100 ~~g~~i 105 (333)
|+|+.-
T Consensus 153 Iggkk~ 158 (278)
T KOG3152|consen 153 IGGKKK 158 (278)
T ss_pred cCCCCC
Confidence 998653
No 159
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.76 E-value=7.9e-05 Score=45.64 Aligned_cols=52 Identities=21% Similarity=0.486 Sum_probs=42.8
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHH
Q psy8956 35 NELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKAR 92 (333)
Q Consensus 35 ~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al 92 (333)
+.|-|.|.|++..+. +...|..||.|..+.+.. ....+||+|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~-----~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPE-----STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCC-----CCcEEEEEECCHHHHHhhC
Confidence 568899999888765 666888999999876662 3567999999999999985
No 160
>KOG2416|consensus
Probab=97.74 E-value=3.6e-05 Score=68.75 Aligned_cols=102 Identities=16% Similarity=0.199 Sum_probs=73.4
Q ss_pred eeeccCCCCCCCCccccCcCCcCcccccceEEEeCCCCCCCHHHHHHHHh-cCCCeeEEEEeeCCCCCcccEEEEEeCCH
Q psy8956 7 ILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFK-KFGTLRDVRVARNKNDESRGFAIIVFNTP 85 (333)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~-~~g~v~~v~i~~~~~~~~~g~a~v~f~~~ 85 (333)
.+...-+.++.+.....+..+-.....++.|+|+||-.-.|...|+.++. .+|.|.+. .+|+ -+.+|||.|.+.
T Consensus 417 ~v~~s~~~rsvS~~~~~RvpSPsR~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~--WmDk---IKShCyV~yss~ 491 (718)
T KOG2416|consen 417 KVDFSRSDRSVSEDPKERVPSPSRKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF--WMDK---IKSHCYVSYSSV 491 (718)
T ss_pred ccccchhhhhhccCccccCCCCCCCCccceEeeecccccchHHHHHHHHhhccCchHHH--HHHH---hhcceeEecccH
Confidence 33334444433333333333333457788999999999999999999999 56677766 3332 355799999999
Q ss_pred HHHHHHHHHhcCCcc---CCeeeEEeeeccC
Q psy8956 86 AEAKKARVEMNGHLI---GSKPVIITFVELK 113 (333)
Q Consensus 86 e~A~~al~~l~~~~~---~g~~i~v~~~~~~ 113 (333)
++|.+....|+|..| +.+.|.+.|....
T Consensus 492 eEA~atr~AlhnV~WP~sNPK~L~adf~~~d 522 (718)
T KOG2416|consen 492 EEAAATREALHNVQWPPSNPKHLIADFVRAD 522 (718)
T ss_pred HHHHHHHHHHhccccCCCCCceeEeeecchh
Confidence 999999999999987 4588888887433
No 161
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.72 E-value=0.00031 Score=52.11 Aligned_cols=76 Identities=21% Similarity=0.347 Sum_probs=53.5
Q ss_pred CCCccceEEEecCC------CCCCH---HHHHHHhhccCCeeEEEeecCCcEEEEEECCHHHHHHHHHHhCCCeeCCeeE
Q psy8956 224 QPARKNKIFVANLP------SNINN---SEFEELFARFGTITSSSLVSDKHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294 (333)
Q Consensus 224 ~~~~~~~l~v~nl~------~~~~~---~~l~~~f~~~g~v~~v~i~~~~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l 294 (333)
.+++-.|+.|+=.. ..+.+ .+|-+.|..||.|.-+++.. +...|+|.+-+.|.+|++ ++|..++|+.|
T Consensus 23 ~GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~--~~mwVTF~dg~sALaals-~dg~~v~g~~l 99 (146)
T PF08952_consen 23 QGPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVG--DTMWVTFRDGQSALAALS-LDGIQVNGRTL 99 (146)
T ss_dssp ---TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEET--TCEEEEESSCHHHHHHHH-GCCSEETTEEE
T ss_pred cCCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeC--CeEEEEECccHHHHHHHc-cCCcEECCEEE
Confidence 34555677776554 12332 36777788999998888874 588999999999999998 99999999999
Q ss_pred EEEecCCC
Q psy8956 295 KVTLSGTK 302 (333)
Q Consensus 295 ~v~~a~~~ 302 (333)
+|++.++.
T Consensus 100 ~i~LKtpd 107 (146)
T PF08952_consen 100 KIRLKTPD 107 (146)
T ss_dssp EEEE----
T ss_pred EEEeCCcc
Confidence 99998774
No 162
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.71 E-value=0.00012 Score=44.83 Aligned_cols=52 Identities=25% Similarity=0.394 Sum_probs=43.8
Q ss_pred ceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecCCcEEEEEECCHHHHHHHH
Q psy8956 229 NKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKHIGFIEFIMPKHATHAV 281 (333)
Q Consensus 229 ~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~~~~~fV~f~~~~~A~~a~ 281 (333)
+.|-|.+.+.... +.+...|..||.|....+......++|+|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVDIYVPESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEEEEcCCCCcEEEEEECCHHHHHhhC
Confidence 4678889986654 456668888999999999877889999999999999985
No 163
>KOG2202|consensus
Probab=97.70 E-value=2.2e-05 Score=63.07 Aligned_cols=60 Identities=15% Similarity=0.335 Sum_probs=51.5
Q ss_pred HHHHHHhh-ccCCeeEEEeecC-----CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEecCCC
Q psy8956 243 SEFEELFA-RFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302 (333)
Q Consensus 243 ~~l~~~f~-~~g~v~~v~i~~~-----~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~a~~~ 302 (333)
+++...|+ +||.|+.+.+... .|-+||.|...++|.+|++.|||.++.|++|...+..-.
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT 148 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVT 148 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcC
Confidence 45555555 8999999877765 788999999999999999999999999999999887543
No 164
>KOG1995|consensus
Probab=97.66 E-value=6.3e-05 Score=63.40 Aligned_cols=84 Identities=17% Similarity=0.268 Sum_probs=73.4
Q ss_pred ccccceEEEeCCCCCCCHHHHHHHHhcCCCee--------EEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccC
Q psy8956 31 VYKENELHVNNLEPSVDNQALINEFKKFGTLR--------DVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIG 101 (333)
Q Consensus 31 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~--------~v~i~~~~-~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~ 101 (333)
..-+.+|||-+||..+++++|..+|.+||.|. .|.+.++. ++..++-|.|.|.+...|+.|+.-+++..+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 34556799999999999999999999999774 35677777 8899999999999999999999999999999
Q ss_pred CeeeEEeeeccCC
Q psy8956 102 SKPVIITFVELKP 114 (333)
Q Consensus 102 g~~i~v~~~~~~~ 114 (333)
+..|+|.++...+
T Consensus 143 gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 143 GNTIKVSLAERRT 155 (351)
T ss_pred CCCchhhhhhhcc
Confidence 9999998775443
No 165
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.60 E-value=0.00023 Score=49.73 Aligned_cols=75 Identities=20% Similarity=0.353 Sum_probs=51.5
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEE-Ee---------eCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccC
Q psy8956 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVR-VA---------RNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIG 101 (333)
Q Consensus 32 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~-i~---------~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~ 101 (333)
...+-|.|-|.|+.. .+.|.+.|++||.|.+.. +. ....+ .+...|+|.++.+|.+||.. ||..+.
T Consensus 4 ~~~~wVtVFGfp~~~-~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~--~NWi~I~Y~~~~~A~rAL~~-NG~i~~ 79 (100)
T PF05172_consen 4 DSETWVTVFGFPPSA-SNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSG--GNWIHITYDNPLSAQRALQK-NGTIFS 79 (100)
T ss_dssp GGCCEEEEE---GGG-HHHHHHHHHCCS-EECEEGGG----------E-CC--TTEEEEEESSHHHHHHHHTT-TTEEET
T ss_pred cCCeEEEEEccCHHH-HHHHHHHHHhcceEEEeecccccccccccccCCCC--CCEEEEECCCHHHHHHHHHh-CCeEEc
Confidence 345679999999994 455999999999997663 00 11133 45699999999999999965 999998
Q ss_pred CeeeE-Eeee
Q psy8956 102 SKPVI-ITFV 110 (333)
Q Consensus 102 g~~i~-v~~~ 110 (333)
|..+- |.+.
T Consensus 80 g~~mvGV~~~ 89 (100)
T PF05172_consen 80 GSLMVGVKPC 89 (100)
T ss_dssp TCEEEEEEE-
T ss_pred CcEEEEEEEc
Confidence 86554 4455
No 166
>KOG1996|consensus
Probab=97.60 E-value=0.00018 Score=58.85 Aligned_cols=73 Identities=18% Similarity=0.314 Sum_probs=56.8
Q ss_pred ceEEEecCC--CCCC---HHHHHHHhhccCCeeEEEeecC-------CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEE
Q psy8956 229 NKIFVANLP--SNIN---NSEFEELFARFGTITSSSLVSD-------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296 (333)
Q Consensus 229 ~~l~v~nl~--~~~~---~~~l~~~f~~~g~v~~v~i~~~-------~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v 296 (333)
++|.+.|+- ..++ ++++++.+++||.|..|.|... ---.||+|.+.++|.+|+-.|||+.|+|+.++.
T Consensus 282 kvlllrnmVg~gevd~elede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A 361 (378)
T KOG1996|consen 282 KVLLLRNMVGAGEVDEELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSA 361 (378)
T ss_pred HHHHhhhhcCcccccHHHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeh
Confidence 445555552 2333 3568899999999999887765 224799999999999999999999999999987
Q ss_pred EecCC
Q psy8956 297 TLSGT 301 (333)
Q Consensus 297 ~~a~~ 301 (333)
-|-..
T Consensus 362 ~Fyn~ 366 (378)
T KOG1996|consen 362 CFYNL 366 (378)
T ss_pred eeccH
Confidence 76543
No 167
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.59 E-value=0.00042 Score=48.45 Aligned_cols=71 Identities=23% Similarity=0.312 Sum_probs=53.1
Q ss_pred cceEEEecCCCCCCHHHHHHHhhccCCeeEEE-------------eecCCcEEEEEECCHHHHHHHHHHhCCCeeCCe-e
Q psy8956 228 KNKIFVANLPSNINNSEFEELFARFGTITSSS-------------LVSDKHIGFIEFIMPKHATHAVSTMNGHVFKSK-P 293 (333)
Q Consensus 228 ~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~-------------i~~~~~~~fV~f~~~~~A~~a~~~l~g~~l~g~-~ 293 (333)
.+-|.|-+.|.. ....+.+.|++||.|.... +....+...|+|++..+|.+||. -||..|.|. .
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcEE
Confidence 356888888877 6678889999999987764 44557899999999999999999 899999885 4
Q ss_pred EEEEecC
Q psy8956 294 LKVTLSG 300 (333)
Q Consensus 294 l~v~~a~ 300 (333)
+-|.+.+
T Consensus 84 vGV~~~~ 90 (100)
T PF05172_consen 84 VGVKPCD 90 (100)
T ss_dssp EEEEE-H
T ss_pred EEEEEcH
Confidence 5577764
No 168
>KOG1855|consensus
Probab=97.57 E-value=0.00018 Score=62.04 Aligned_cols=65 Identities=20% Similarity=0.323 Sum_probs=56.9
Q ss_pred CCCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC-------------------CcEEEEEECCHHHHHHHHHHh
Q psy8956 224 QPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-------------------KHIGFIEFIMPKHATHAVSTM 284 (333)
Q Consensus 224 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~-------------------~~~~fV~f~~~~~A~~a~~~l 284 (333)
.+.++++|.+.|||.+-.-+-|.++|+.+|.|..|+|+.. +-+|+|+|.+.+.|.+|.+.|
T Consensus 227 eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~ 306 (484)
T KOG1855|consen 227 EELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELL 306 (484)
T ss_pred cccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhh
Confidence 4457899999999999888999999999999999999865 336899999999999999988
Q ss_pred CCCe
Q psy8956 285 NGHV 288 (333)
Q Consensus 285 ~g~~ 288 (333)
+...
T Consensus 307 ~~e~ 310 (484)
T KOG1855|consen 307 NPEQ 310 (484)
T ss_pred chhh
Confidence 6543
No 169
>KOG0115|consensus
Probab=97.52 E-value=0.00064 Score=54.76 Aligned_cols=88 Identities=24% Similarity=0.393 Sum_probs=76.8
Q ss_pred HHHHHHHhcCCccCCeeeEEeeeccCCCCCCCCCCCCcccCCCCeEEEeCCCCCCCHHHHHHHhhccCceEEEEEEeCCC
Q psy8956 88 AKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDEN 167 (333)
Q Consensus 88 A~~al~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~ 167 (333)
|..|...|++....++.+.|.|+ ....|+|.||+..+..+.+.+.|+.||++..-.+..+..
T Consensus 7 ae~ak~eLd~~~~~~~~lr~rfa------------------~~a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r 68 (275)
T KOG0115|consen 7 AEIAKRELDGRFPKGRSLRVRFA------------------MHAELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDR 68 (275)
T ss_pred HHHHHHhcCCCCCCCCceEEEee------------------ccceEEEEecchhhhhHHHHHhhhhcCccchheeeeccc
Confidence 44555678999999999999999 226799999999999999999999999999888888878
Q ss_pred CCceeEEEEEeCCHHHHHHHHHHhCC
Q psy8956 168 GKSKGFGFIQFFSYKAAEKAIIEMNG 193 (333)
Q Consensus 168 ~~~~~~~~v~f~~~~~a~~a~~~l~~ 193 (333)
++..+-++|+|...-.+.+|+..+..
T Consensus 69 ~k~t~eg~v~~~~k~~a~~a~rr~~~ 94 (275)
T KOG0115|consen 69 GKPTREGIVEFAKKPNARKAARRCRE 94 (275)
T ss_pred ccccccchhhhhcchhHHHHHHHhcc
Confidence 88889999999999999999887743
No 170
>KOG3152|consensus
Probab=97.50 E-value=6.5e-05 Score=60.24 Aligned_cols=67 Identities=18% Similarity=0.445 Sum_probs=59.1
Q ss_pred ccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC------------------CcEEEEEECCHHHHHHHHHHhCCCe
Q psy8956 227 RKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------------------KHIGFIEFIMPKHATHAVSTMNGHV 288 (333)
Q Consensus 227 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~------------------~~~~fV~f~~~~~A~~a~~~l~g~~ 288 (333)
.+-++|+++||+.++..-|+++|++||.|-.|.+-.. -.-|.|+|.+...|.++...|||.+
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4468999999999999999999999999998887765 0137899999999999999999999
Q ss_pred eCCee
Q psy8956 289 FKSKP 293 (333)
Q Consensus 289 l~g~~ 293 (333)
|+|+.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99965
No 171
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=97.46 E-value=0.0013 Score=43.48 Aligned_cols=57 Identities=23% Similarity=0.434 Sum_probs=43.6
Q ss_pred ccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecCCcEEEEEECCHHHHHHHHHHhCC
Q psy8956 227 RKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKHIGFIEFIMPKHATHAVSTMNG 286 (333)
Q Consensus 227 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~~~~~fV~f~~~~~A~~a~~~l~g 286 (333)
+..+.+|+ +|..+...||.++|+.||.|. |..+.+ ..|||...+.+.|..|+..++-
T Consensus 8 RdHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~d-TSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 8 RDHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWIND-TSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp GCCEEEEE---TT--HHHHHHHCCCCCCEE-EEEECT-TEEEEEECCCHHHHHHHHHHTT
T ss_pred cceEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcC-CcEEEEeecHHHHHHHHHHhcc
Confidence 34556666 999999999999999999984 555544 7999999999999999998863
No 172
>KOG2416|consensus
Probab=97.39 E-value=0.00049 Score=61.82 Aligned_cols=78 Identities=13% Similarity=0.183 Sum_probs=66.5
Q ss_pred CCCccceEEEecCCCCCCHHHHHHHhh-ccCCeeEEEeecCCcEEEEEECCHHHHHHHHHHhCCCee---CCeeEEEEec
Q psy8956 224 QPARKNKIFVANLPSNINNSEFEELFA-RFGTITSSSLVSDKHIGFIEFIMPKHATHAVSTMNGHVF---KSKPLKVTLS 299 (333)
Q Consensus 224 ~~~~~~~l~v~nl~~~~~~~~l~~~f~-~~g~v~~v~i~~~~~~~fV~f~~~~~A~~a~~~l~g~~l---~g~~l~v~~a 299 (333)
....+.+|+|.||-..+|..+|+.++. ..|.|....|..-+..|||.|.+.++|.....+|||..+ +++.|.+.|+
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf~ 519 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADFV 519 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHHHHHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeeec
Confidence 445678999999999999999999999 466677774444488999999999999999999999987 5788999998
Q ss_pred CC
Q psy8956 300 GT 301 (333)
Q Consensus 300 ~~ 301 (333)
..
T Consensus 520 ~~ 521 (718)
T KOG2416|consen 520 RA 521 (718)
T ss_pred ch
Confidence 55
No 173
>KOG4849|consensus
Probab=97.38 E-value=0.00019 Score=60.07 Aligned_cols=78 Identities=21% Similarity=0.302 Sum_probs=69.1
Q ss_pred ccccceEEEeCCCCCCCHHHHHHHHhcCC--CeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEE
Q psy8956 31 VYKENELHVNNLEPSVDNQALINEFKKFG--TLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVII 107 (333)
Q Consensus 31 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g--~v~~v~i~~~~-~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v 107 (333)
.-+..-+||+||-|-+|++||.+.+...| .+.+++++-++ +|.++|||+|...+..+.++.++.|..+.+.|+.-.|
T Consensus 77 ~Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 77 EGRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred cCceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 34556789999999999999999999988 67788888888 8999999999999999999999999888898877666
Q ss_pred e
Q psy8956 108 T 108 (333)
Q Consensus 108 ~ 108 (333)
-
T Consensus 157 ~ 157 (498)
T KOG4849|consen 157 L 157 (498)
T ss_pred e
Confidence 5
No 174
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=97.37 E-value=0.0012 Score=43.62 Aligned_cols=59 Identities=14% Similarity=0.247 Sum_probs=45.4
Q ss_pred ccccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcC
Q psy8956 31 VYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNG 97 (333)
Q Consensus 31 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~ 97 (333)
+...+..+|+ .|..+...||.++|+.||.|. |..+.+ ..|||...+.+.|..|+..+..
T Consensus 6 P~RdHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~d------TSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 6 PSRDHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWIND------TSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp -SGCCEEEEE---TT--HHHHHHHCCCCCCEE-EEEECT------TEEEEEECCCHHHHHHHHHHTT
T ss_pred CCcceEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcC------CcEEEEeecHHHHHHHHHHhcc
Confidence 3455778888 999999999999999999984 777754 3599999999999999988753
No 175
>KOG1995|consensus
Probab=97.35 E-value=0.00023 Score=60.15 Aligned_cols=81 Identities=23% Similarity=0.414 Sum_probs=69.3
Q ss_pred CCccceEEEecCCCCCCHHHHHHHhhccCCeeE--------EEeecC------CcEEEEEECCHHHHHHHHHHhCCCeeC
Q psy8956 225 PARKNKIFVANLPSNINNSEFEELFARFGTITS--------SSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFK 290 (333)
Q Consensus 225 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~--------v~i~~~------~~~~fV~f~~~~~A~~a~~~l~g~~l~ 290 (333)
.....++||.++|..++.+++.++|.++|.|.. +.+-.+ ++-|.|.|.++..|+.|+.-+++..+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 334578999999999999999999999998743 222222 788999999999999999999999999
Q ss_pred CeeEEEEecCCCCCC
Q psy8956 291 SKPLKVTLSGTKPGV 305 (333)
Q Consensus 291 g~~l~v~~a~~~~~~ 305 (333)
|..|+|.+|..+...
T Consensus 143 gn~ikvs~a~~r~~v 157 (351)
T KOG1995|consen 143 GNTIKVSLAERRTGV 157 (351)
T ss_pred CCCchhhhhhhccCc
Confidence 999999999887753
No 176
>KOG2314|consensus
Probab=97.32 E-value=0.00045 Score=61.66 Aligned_cols=77 Identities=16% Similarity=0.268 Sum_probs=62.4
Q ss_pred cccceEEEeCCCCCC--CH----HHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccC-Cee
Q psy8956 32 YKENELHVNNLEPSV--DN----QALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIG-SKP 104 (333)
Q Consensus 32 ~~~~~l~V~nLp~~~--t~----~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~-g~~ 104 (333)
--..-|.|.|+|--- .. .-|.++|+++|++..+.+..+..|..+|++|++|.+..+|+.|++.|||..+. .++
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 445678999998643 22 23457799999999998888887779999999999999999999999999864 466
Q ss_pred eEEe
Q psy8956 105 VIIT 108 (333)
Q Consensus 105 i~v~ 108 (333)
..|.
T Consensus 136 f~v~ 139 (698)
T KOG2314|consen 136 FFVR 139 (698)
T ss_pred EEee
Confidence 6666
No 177
>KOG2202|consensus
Probab=97.25 E-value=0.00015 Score=58.32 Aligned_cols=61 Identities=20% Similarity=0.422 Sum_probs=52.2
Q ss_pred HHHHHHh-cCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeee
Q psy8956 50 ALINEFK-KFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFV 110 (333)
Q Consensus 50 ~l~~~f~-~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~~ 110 (333)
+|...|. +||.|.++.|..+..-.-.|-+||.|...++|.+|++.||+.-+.|+.|...++
T Consensus 84 d~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred HHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec
Confidence 3444444 899999998888765556788999999999999999999999999999999877
No 178
>KOG1855|consensus
Probab=97.12 E-value=0.00057 Score=58.99 Aligned_cols=82 Identities=15% Similarity=0.230 Sum_probs=63.8
Q ss_pred CcCcccccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeC---C-C--CC--------cccEEEEEeCCHHHHHHHH
Q psy8956 27 ENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARN---K-N--DE--------SRGFAIIVFNTPAEAKKAR 92 (333)
Q Consensus 27 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~---~-~--~~--------~~g~a~v~f~~~e~A~~al 92 (333)
+.+...+.++|.+-|||.+-.-+.|.++|..+|.|..|+|++. . + +. .+-+|+|+|...+.|.+|.
T Consensus 224 ~~~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~ 303 (484)
T KOG1855|consen 224 FDEEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKAR 303 (484)
T ss_pred ccccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHH
Confidence 3444467899999999999888999999999999999999987 2 1 11 3556999999999999999
Q ss_pred HHhcCCccCCeeeEEe
Q psy8956 93 VEMNGHLIGSKPVIIT 108 (333)
Q Consensus 93 ~~l~~~~~~g~~i~v~ 108 (333)
+.|+...-+..-+.|.
T Consensus 304 e~~~~e~~wr~glkvk 319 (484)
T KOG1855|consen 304 ELLNPEQNWRMGLKVK 319 (484)
T ss_pred Hhhchhhhhhhcchhh
Confidence 8775554433344443
No 179
>KOG0115|consensus
Probab=97.03 E-value=0.0019 Score=52.18 Aligned_cols=98 Identities=28% Similarity=0.343 Sum_probs=79.0
Q ss_pred HHHHHHHhCCceeccceeEEEeeeecCCCccCCCCCCCCCCCCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC
Q psy8956 184 AEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD 263 (333)
Q Consensus 184 a~~a~~~l~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~ 263 (333)
|..|-..|.+....++.+.|.++.. ..|+|.|++..+..+.+...|+.||.|....+..+
T Consensus 7 ae~ak~eLd~~~~~~~~lr~rfa~~--------------------a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD 66 (275)
T KOG0115|consen 7 AEIAKRELDGRFPKGRSLRVRFAMH--------------------AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVD 66 (275)
T ss_pred HHHHHHhcCCCCCCCCceEEEeecc--------------------ceEEEEecchhhhhHHHHHhhhhcCccchheeeec
Confidence 4556667889999999999999843 46999999999999999999999999988766666
Q ss_pred -----CcEEEEEECCHHHHHHHHHHhCCCe----eCCeeEEEEecCC
Q psy8956 264 -----KHIGFIEFIMPKHATHAVSTMNGHV----FKSKPLKVTLSGT 301 (333)
Q Consensus 264 -----~~~~fV~f~~~~~A~~a~~~l~g~~----l~g~~l~v~~a~~ 301 (333)
.+-++|.|...-.|.+|...++-.- ..+++.-|.....
T Consensus 67 ~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP~eq 113 (275)
T KOG0115|consen 67 DRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEPMEQ 113 (275)
T ss_pred ccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCChhhc
Confidence 5578999999999999999885333 3456666655433
No 180
>KOG2314|consensus
Probab=97.02 E-value=0.003 Score=56.59 Aligned_cols=76 Identities=21% Similarity=0.290 Sum_probs=62.1
Q ss_pred CccceEEEecCCCCCC------HHHHHHHhhccCCeeEEEeecC-----CcEEEEEECCHHHHHHHHHHhCCCeeC-Cee
Q psy8956 226 ARKNKIFVANLPSNIN------NSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFK-SKP 293 (333)
Q Consensus 226 ~~~~~l~v~nl~~~~~------~~~l~~~f~~~g~v~~v~i~~~-----~~~~fV~f~~~~~A~~a~~~l~g~~l~-g~~ 293 (333)
....++.|.|+|---. ..-|..+|+++|++....++.+ +|+.|++|.+..+|..|++.|||+.|+ ...
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 4557899999984321 2346788999999999999866 889999999999999999999999987 677
Q ss_pred EEEEecCC
Q psy8956 294 LKVTLSGT 301 (333)
Q Consensus 294 l~v~~a~~ 301 (333)
..|+.-+.
T Consensus 136 f~v~~f~d 143 (698)
T KOG2314|consen 136 FFVRLFKD 143 (698)
T ss_pred EEeehhhh
Confidence 88766554
No 181
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.00 E-value=0.0033 Score=46.73 Aligned_cols=53 Identities=19% Similarity=0.343 Sum_probs=44.1
Q ss_pred HHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeee
Q psy8956 50 ALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFV 110 (333)
Q Consensus 50 ~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~~ 110 (333)
+|.+.|..||.+.=+++.- +.-+|+|.+.++|.+|+ .++|..++|+.++|+..
T Consensus 52 ~ll~~~~~~GevvLvRfv~-------~~mwVTF~dg~sALaal-s~dg~~v~g~~l~i~LK 104 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVG-------DTMWVTFRDGQSALAAL-SLDGIQVNGRTLKIRLK 104 (146)
T ss_dssp HHHHHHHCCS-ECEEEEET-------TCEEEEESSCHHHHHHH-HGCCSEETTEEEEEEE-
T ss_pred HHHHHHHhCCceEEEEEeC-------CeEEEEECccHHHHHHH-ccCCcEECCEEEEEEeC
Confidence 5677899999887666663 35999999999999999 68999999999999965
No 182
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=96.98 E-value=0.0036 Score=49.22 Aligned_cols=62 Identities=26% Similarity=0.328 Sum_probs=49.1
Q ss_pred CHHHHHHHhhccCCeeEEEeecCCcEEEEEECCHHHHHHHHHHhC--CCeeCCeeEEEEecCCC
Q psy8956 241 NNSEFEELFARFGTITSSSLVSDKHIGFIEFIMPKHATHAVSTMN--GHVFKSKPLKVTLSGTK 302 (333)
Q Consensus 241 ~~~~l~~~f~~~g~v~~v~i~~~~~~~fV~f~~~~~A~~a~~~l~--g~~l~g~~l~v~~a~~~ 302 (333)
..+.|+++|..|+.+..+..++.-+-..|.|.+.++|.+|+..|+ +..+.|..+++.|+...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcCCCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 457899999999999998888887888999999999999999999 99999999999999543
No 183
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.91 E-value=0.0082 Score=37.70 Aligned_cols=54 Identities=15% Similarity=0.348 Sum_probs=43.6
Q ss_pred cceEEEeCCCCCCCHHHHHHHHhcC----CCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHh
Q psy8956 34 ENELHVNNLEPSVDNQALINEFKKF----GTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEM 95 (333)
Q Consensus 34 ~~~l~V~nLp~~~t~~~l~~~f~~~----g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l 95 (333)
..+|+|+|+. +++.++|+.+|..| ++ ..|..+.|. .|=|.|.+.+.|.+||..|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~-~~IEWIdDt------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGP-FRIEWIDDT------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCC-ceEEEecCC------cEEEEECCHHHHHHHHHcC
Confidence 4579999985 47778899999999 54 467777764 3889999999999999754
No 184
>KOG4676|consensus
Probab=96.90 E-value=0.0023 Score=54.74 Aligned_cols=72 Identities=24% Similarity=0.411 Sum_probs=61.2
Q ss_pred ceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC---------CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEec
Q psy8956 229 NKIFVANLPSNINNSEFEELFARFGTITSSSLVSD---------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299 (333)
Q Consensus 229 ~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~---------~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~a 299 (333)
..|.|.||.+..+.++++.+|...|.|..+.+... ...|||.|.+...+.-|.. |.+++|=|+.|.|...
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEec
Confidence 48999999999999999999999999999988874 5589999999988888855 7778888888877665
Q ss_pred CC
Q psy8956 300 GT 301 (333)
Q Consensus 300 ~~ 301 (333)
-.
T Consensus 87 ~~ 88 (479)
T KOG4676|consen 87 GD 88 (479)
T ss_pred CC
Confidence 43
No 185
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.90 E-value=0.0064 Score=44.59 Aligned_cols=75 Identities=19% Similarity=0.218 Sum_probs=56.6
Q ss_pred CCCccceEEEecCCCCC----CHHHHHHHhhccCCeeEEEeecCCcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEec
Q psy8956 224 QPARKNKIFVANLPSNI----NNSEFEELFARFGTITSSSLVSDKHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299 (333)
Q Consensus 224 ~~~~~~~l~v~nl~~~~----~~~~l~~~f~~~g~v~~v~i~~~~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~a 299 (333)
.+++..+|.|.=+..++ +...+...++.||+|.+|... ++..|.|.|.+..+|.+|+.+++. ..-|..+.++|-
T Consensus 82 kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-GrqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsWq 159 (166)
T PF15023_consen 82 KEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-GRQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSWQ 159 (166)
T ss_pred CCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-CCceEEEEehhhHHHHHHHHhhcC-CCCCceEEeecc
Confidence 34566777776554443 344566667889999999876 568999999999999999999876 556788888775
Q ss_pred C
Q psy8956 300 G 300 (333)
Q Consensus 300 ~ 300 (333)
.
T Consensus 160 q 160 (166)
T PF15023_consen 160 Q 160 (166)
T ss_pred c
Confidence 3
No 186
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=96.88 E-value=0.062 Score=44.62 Aligned_cols=185 Identities=12% Similarity=0.229 Sum_probs=117.0
Q ss_pred cCcCCcCcccccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCC--------CCCcccEEEEEeCCHHHHHHHH--
Q psy8956 23 RSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK--------NDESRGFAIIVFNTPAEAKKAR-- 92 (333)
Q Consensus 23 ~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~--------~~~~~g~a~v~f~~~e~A~~al-- 92 (333)
+.-+.+++....|.|++.|+..+++-..+...|-+||+|++|.++.+. .-.....+.+-|-+.+.+....
T Consensus 4 kiLPkGdD~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNn 83 (309)
T PF10567_consen 4 KILPKGDDEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNN 83 (309)
T ss_pred eecCCCCccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHH
Confidence 334567788889999999999999999999999999999999999876 2234567999999999887543
Q ss_pred --HHhcCC--ccCCeeeEEeeeccCCCCCC------CCC--------C-CCcccCCCCeEEEeCCCCCCCHHHHHHHh--
Q psy8956 93 --VEMNGH--LIGSKPVIITFVELKPGQRS------KPV--------G-PEEKQYKKDKVFVKNLVETVDEEELKSHF-- 151 (333)
Q Consensus 93 --~~l~~~--~~~g~~i~v~~~~~~~~~~~------~~~--------~-~~~~~~~~~~l~v~~l~~~~~~~~l~~~f-- 151 (333)
++|... .+....+++.|...+-.... ... . .-......+.|.|.--.+-..++-+.+.+
T Consensus 84 vLQrLsEfK~~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~IeF~~~~~~~dl~~~kL~f 163 (309)
T PF10567_consen 84 VLQRLSEFKTKLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIEFKDPVDKDDLIEKKLPF 163 (309)
T ss_pred HHHHHHHHHHhcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEEecCccchhHHHHHhhhh
Confidence 333322 25666777776542211111 000 0 11223345667776442222333333333
Q ss_pred -hccC----ceEEEEEEeCC---CCCceeEEEEEeCCHHHHHHHHHHhCC--ce-eccceeEEEeee
Q psy8956 152 -IKFG----NIIEVKIVRDE---NGKSKGFGFIQFFSYKAAEKAIIEMNG--RM-IQHNSTFVSLAE 207 (333)
Q Consensus 152 -~~~g----~v~~~~~~~~~---~~~~~~~~~v~f~~~~~a~~a~~~l~~--~~-~~~~~i~v~~~~ 207 (333)
..-+ .++++.++... ...+..||.+.|-....|.+.++.+.. .. --.++..|....
T Consensus 164 L~~~~n~RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk~~~~~~~Iskc~fVs~~~ 230 (309)
T PF10567_consen 164 LKNSNNKRYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLKSNSKKLGISKCFFVSVQP 230 (309)
T ss_pred hccCCCceEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHHhcccccCcceEEEEeccC
Confidence 2222 35566666543 345788999999999999999887752 22 223445555543
No 187
>KOG1996|consensus
Probab=96.82 E-value=0.0043 Score=51.01 Aligned_cols=63 Identities=24% Similarity=0.345 Sum_probs=51.5
Q ss_pred HHHHHHHHhcCCCeeEEEEeeCCCC-C-cccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeee
Q psy8956 48 NQALINEFKKFGTLRDVRVARNKND-E-SRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFV 110 (333)
Q Consensus 48 ~~~l~~~f~~~g~v~~v~i~~~~~~-~-~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~~ 110 (333)
++++++-+++||.|..|.|.-..+- . -.--.||+|...++|.+|+-.|||..|+|+.+...|-
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fy 364 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFY 364 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheec
Confidence 4456788999999999888876632 1 1223899999999999999999999999999988755
No 188
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=96.67 E-value=0.027 Score=40.23 Aligned_cols=69 Identities=20% Similarity=0.296 Sum_probs=51.2
Q ss_pred ccceEEEeCCCCCC-CHHHHHHHHhcCC-CeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCC
Q psy8956 33 KENELHVNNLEPSV-DNQALINEFKKFG-TLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGS 102 (333)
Q Consensus 33 ~~~~l~V~nLp~~~-t~~~l~~~f~~~g-~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g 102 (333)
....+.+--.|+.+ +.++|..+...+- .|..++|+++... ++-.++++|.+.++|.......||+.+..
T Consensus 11 ~~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~p-nrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 11 RRSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTP-NRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred CCceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCC-ceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 33445555566665 5555666666655 7778899988653 66789999999999999999999998644
No 189
>KOG2591|consensus
Probab=96.67 E-value=0.0048 Score=55.27 Aligned_cols=73 Identities=15% Similarity=0.170 Sum_probs=59.5
Q ss_pred cccccceEEEeCCCCCCCHHHHHHHHhc--CCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCC--ccCCeee
Q psy8956 30 KVYKENELHVNNLEPSVDNQALINEFKK--FGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH--LIGSKPV 105 (333)
Q Consensus 30 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~--~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~--~~~g~~i 105 (333)
...+.+.|+|+-||..+.+++++.+|.. |..+.++.+-.+. -.||+|++.+||+.|.++|... .|-|+.|
T Consensus 171 p~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~------nWyITfesd~DAQqAykylreevk~fqgKpI 244 (684)
T KOG2591|consen 171 PNHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND------NWYITFESDTDAQQAYKYLREEVKTFQGKPI 244 (684)
T ss_pred cCcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC------ceEEEeecchhHHHHHHHHHHHHHhhcCcch
Confidence 3467789999999999999999999977 7788888766542 3899999999999999988655 3777766
Q ss_pred EEe
Q psy8956 106 IIT 108 (333)
Q Consensus 106 ~v~ 108 (333)
..+
T Consensus 245 mAR 247 (684)
T KOG2591|consen 245 MAR 247 (684)
T ss_pred hhh
Confidence 655
No 190
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.63 E-value=0.02 Score=36.00 Aligned_cols=55 Identities=9% Similarity=0.224 Sum_probs=44.5
Q ss_pred cceEEEecCCCCCCHHHHHHHhhcc---CCeeEEEeecCCcEEEEEECCHHHHHHHHHHh
Q psy8956 228 KNKIFVANLPSNINNSEFEELFARF---GTITSSSLVSDKHIGFIEFIMPKHATHAVSTM 284 (333)
Q Consensus 228 ~~~l~v~nl~~~~~~~~l~~~f~~~---g~v~~v~i~~~~~~~fV~f~~~~~A~~a~~~l 284 (333)
...|+|.|+. .++.+||+.+|..| .....|..+.+ ..|=|-|.+.+.|.+|+..|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdD-tScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDD-TSCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecC-CcEEEEECCHHHHHHHHHcC
Confidence 3578999987 68999999999998 12457888777 56667799999999999865
No 191
>KOG0804|consensus
Probab=96.49 E-value=0.031 Score=49.06 Aligned_cols=68 Identities=22% Similarity=0.324 Sum_probs=60.5
Q ss_pred cceEEEeCCCCCCCHHHHHHHHhcCC-CeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCC
Q psy8956 34 ENELHVNNLEPSVDNQALINEFKKFG-TLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGS 102 (333)
Q Consensus 34 ~~~l~V~nLp~~~t~~~l~~~f~~~g-~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g 102 (333)
.+.|.|-.+|..+|..||..|+..+- .|.+++++++..+ ++-.++|+|.+.++|....+.+||..|..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~p-nrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMP-NRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCC-ceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 78899999999999999999998876 8899999997644 56679999999999999999999998755
No 192
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=96.48 E-value=0.017 Score=36.95 Aligned_cols=55 Identities=20% Similarity=0.295 Sum_probs=46.5
Q ss_pred CCCHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEE
Q psy8956 45 SVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVII 107 (333)
Q Consensus 45 ~~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v 107 (333)
.++-++++..|..|+-. +|..+++| -||.|.+.++|++|....+|+.+.+-.+.+
T Consensus 11 ~~~v~d~K~~Lr~y~~~---~I~~d~tG-----fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWD---RIRDDRTG-----FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCcc---eEEecCCE-----EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 46889999999999854 45677776 789999999999999999999888777654
No 193
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=96.22 E-value=0.0052 Score=48.21 Aligned_cols=81 Identities=15% Similarity=0.266 Sum_probs=49.8
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhc-CCCe---eEEEEeeCC--CC-CcccEEEEEeCCHHHHHHHHHHhcCCccCC--
Q psy8956 32 YKENELHVNNLEPSVDNQALINEFKK-FGTL---RDVRVARNK--ND-ESRGFAIIVFNTPAEAKKARVEMNGHLIGS-- 102 (333)
Q Consensus 32 ~~~~~l~V~nLp~~~t~~~l~~~f~~-~g~v---~~v~i~~~~--~~-~~~g~a~v~f~~~e~A~~al~~l~~~~~~g-- 102 (333)
....+|-|++||+.+|++++.+.+.. ++.- ..+.-.... .. ....-|||.|.+.+++......++|..+.+
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 34568999999999999999997776 5544 233311222 11 133349999999999999999999987643
Q ss_pred ---eeeEEeeecc
Q psy8956 103 ---KPVIITFVEL 112 (333)
Q Consensus 103 ---~~i~v~~~~~ 112 (333)
....|+++..
T Consensus 85 g~~~~~~VE~Apy 97 (176)
T PF03467_consen 85 GNEYPAVVEFAPY 97 (176)
T ss_dssp S-EEEEEEEE-SS
T ss_pred CCCcceeEEEcch
Confidence 3444556633
No 194
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=96.08 E-value=0.085 Score=37.72 Aligned_cols=64 Identities=20% Similarity=0.195 Sum_probs=48.9
Q ss_pred cceEEEecCCCCCCHHHHHHHhhccCC-eeEEEeecC----CcEEEEEECCHHHHHHHHHHhCCCeeCC
Q psy8956 228 KNKIFVANLPSNINNSEFEELFARFGT-ITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKS 291 (333)
Q Consensus 228 ~~~l~v~nl~~~~~~~~l~~~f~~~g~-v~~v~i~~~----~~~~fV~f~~~~~A~~a~~~l~g~~l~g 291 (333)
+..+.+...|+-++.++|..+.+.+-. |..++|+++ +-.++++|.+.++|..-...+||..+..
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 445555555666677777766666554 678899888 4478999999999999999999998763
No 195
>KOG2068|consensus
Probab=96.06 E-value=0.002 Score=54.27 Aligned_cols=78 Identities=23% Similarity=0.388 Sum_probs=63.5
Q ss_pred ceEEEecCCCCCCHHHH---HHHhhccCCeeEEEeecC---------CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEE
Q psy8956 229 NKIFVANLPSNINNSEF---EELFARFGTITSSSLVSD---------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296 (333)
Q Consensus 229 ~~l~v~nl~~~~~~~~l---~~~f~~~g~v~~v~i~~~---------~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v 296 (333)
.-+|+-+++....++++ .+.|.+||.|..|.+..+ ...++|+|...++|.+|+...+|..++|+.|+.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 34677888877666554 467889999999988775 224799999999999999999999999999999
Q ss_pred EecCCCCCCC
Q psy8956 297 TLSGTKPGVS 306 (333)
Q Consensus 297 ~~a~~~~~~~ 306 (333)
.+...+....
T Consensus 158 ~~gttkycs~ 167 (327)
T KOG2068|consen 158 SLGTTKYCSF 167 (327)
T ss_pred hhCCCcchhH
Confidence 9988766543
No 196
>KOG4574|consensus
Probab=95.74 E-value=0.008 Score=56.62 Aligned_cols=70 Identities=20% Similarity=0.377 Sum_probs=63.3
Q ss_pred CCCHHHHHHHhhccCCeeEEEeecCCcEEEEEECCHHHHHHHHHHhCCCee--CCeeEEEEecCCCCCCCCC
Q psy8956 239 NINNSEFEELFARFGTITSSSLVSDKHIGFIEFIMPKHATHAVSTMNGHVF--KSKPLKVTLSGTKPGVSIT 308 (333)
Q Consensus 239 ~~~~~~l~~~f~~~g~v~~v~i~~~~~~~fV~f~~~~~A~~a~~~l~g~~l--~g~~l~v~~a~~~~~~~~~ 308 (333)
..+-..|..+|+.||.|.+.+..++-..|.|+|.+.+.|..|+++++|+.+ -|.+.+|.+|+.-+...++
T Consensus 309 ~~tSssL~~l~s~yg~v~s~wtlr~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~~~ep~ 380 (1007)
T KOG4574|consen 309 NLTSSSLATLCSDYGSVASAWTLRDLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLPMYEPP 380 (1007)
T ss_pred cchHHHHHHHHHhhcchhhheecccccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccccccccCC
Confidence 455678999999999999999998889999999999999999999999986 5999999999998877765
No 197
>KOG4213|consensus
Probab=95.66 E-value=0.0077 Score=45.89 Aligned_cols=87 Identities=15% Similarity=0.087 Sum_probs=67.8
Q ss_pred CCCCCceeeccCCCCCCCCccccCcCCcCcccccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCCCC--CcccEE
Q psy8956 1 MKSKGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKND--ESRGFA 78 (333)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~~~--~~~g~a 78 (333)
|+|..-+..++.+.. +|-+..+.........+++|.. |.....++|.++-. |.+..+.+.+...+ .-+|-.
T Consensus 81 ~eisedk~k~rr~~s---kplpEvt~e~~~~~~~r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsv 153 (205)
T KOG4213|consen 81 MEISEDKTKIRRSPS---KPLPEVTDEYKEGIKERTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSV 153 (205)
T ss_pred hhhhhchhhhhcCcC---CCCccccHHHHHHHHHhhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCce
Confidence 466677777777776 7788888888888889999988 55556666777766 78888777665555 578899
Q ss_pred EEEeCCHHHHHHHHHH
Q psy8956 79 IIVFNTPAEAKKARVE 94 (333)
Q Consensus 79 ~v~f~~~e~A~~al~~ 94 (333)
||+|.+.+.|.++++.
T Consensus 154 kv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 154 KVTFQTKEQAFANDDT 169 (205)
T ss_pred EEEeecHHHHHhhhhh
Confidence 9999999999998865
No 198
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.62 E-value=0.042 Score=40.44 Aligned_cols=72 Identities=19% Similarity=0.255 Sum_probs=54.1
Q ss_pred cccceEEEeCCCCCC-CHHHH---HHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEE
Q psy8956 32 YKENELHVNNLEPSV-DNQAL---INEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVII 107 (333)
Q Consensus 32 ~~~~~l~V~nLp~~~-t~~~l---~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v 107 (333)
-+-.+|.|+=|..++ ..+|+ .+.++.||+|.+|..+- +..|.|.|.+..+|-.|+..++. ...|..+.+
T Consensus 84 pPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG------rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qC 156 (166)
T PF15023_consen 84 PPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG------RQSAVVVFKDITSACKAVSAFQS-RAPGTMFQC 156 (166)
T ss_pred CCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC------CceEEEEehhhHHHHHHHHhhcC-CCCCceEEe
Confidence 345668888777776 34444 45578899999998874 45699999999999999988765 566776666
Q ss_pred eee
Q psy8956 108 TFV 110 (333)
Q Consensus 108 ~~~ 110 (333)
.+.
T Consensus 157 sWq 159 (166)
T PF15023_consen 157 SWQ 159 (166)
T ss_pred ecc
Confidence 654
No 199
>KOG4285|consensus
Probab=95.34 E-value=0.05 Score=45.24 Aligned_cols=65 Identities=18% Similarity=0.305 Sum_probs=49.8
Q ss_pred cceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeee
Q psy8956 34 ENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPV 105 (333)
Q Consensus 34 ~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i 105 (333)
..=|-|-++|+... ..|.++|.+||.|+..... . +..+-+|.|.+..+|.+||.+ +|+.|.|..+
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~--~---ngNwMhirYssr~~A~KALsk-ng~ii~g~vm 261 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP--S---NGNWMHIRYSSRTHAQKALSK-NGTIIDGDVM 261 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeecC--C---CCceEEEEecchhHHHHhhhh-cCeeeccceE
Confidence 45577778887654 4588999999999754222 2 356799999999999999976 8988877544
No 200
>KOG4849|consensus
Probab=95.32 E-value=0.018 Score=48.68 Aligned_cols=77 Identities=22% Similarity=0.305 Sum_probs=63.7
Q ss_pred CCeEEEeCCCCCCCHHHHHHHhhccC--ceEEEEEEeCC-CCCceeEEEEEeCCHHHHHHHHHHhCCceeccceeEEEee
Q psy8956 130 KDKVFVKNLVETVDEEELKSHFIKFG--NIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLA 206 (333)
Q Consensus 130 ~~~l~v~~l~~~~~~~~l~~~f~~~g--~v~~~~~~~~~-~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~ 206 (333)
..++||+||-+++|+++|.+.+...| .+..+++..++ +|.++|||++...+....+..++-|-...+.|..=.|.-.
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~ 159 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSY 159 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeecc
Confidence 34789999999999999999988766 45566777666 7999999999999999999999988888888876555443
No 201
>KOG2068|consensus
Probab=95.13 E-value=0.0095 Score=50.31 Aligned_cols=79 Identities=10% Similarity=0.267 Sum_probs=61.7
Q ss_pred cccceEEEeCCCCCCCHHHHH---HHHhcCCCeeEEEEeeCCC--C--CcccEEEEEeCCHHHHHHHHHHhcCCccCCee
Q psy8956 32 YKENELHVNNLEPSVDNQALI---NEFKKFGTLRDVRVARNKN--D--ESRGFAIIVFNTPAEAKKARVEMNGHLIGSKP 104 (333)
Q Consensus 32 ~~~~~l~V~nLp~~~t~~~l~---~~f~~~g~v~~v~i~~~~~--~--~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~ 104 (333)
.-.+-+||-+|+.....+.+. ++|.+||.|..|.+.++.+ . .....+||+|...++|..||...+|..+.|+.
T Consensus 75 Vqknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~ 154 (327)
T KOG2068|consen 75 VQKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRA 154 (327)
T ss_pred hhhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhh
Confidence 555778999999887555543 5689999999887777551 1 12233999999999999999999999999999
Q ss_pred eEEeee
Q psy8956 105 VIITFV 110 (333)
Q Consensus 105 i~v~~~ 110 (333)
+++.+.
T Consensus 155 lka~~g 160 (327)
T KOG2068|consen 155 LKASLG 160 (327)
T ss_pred hHHhhC
Confidence 777655
No 202
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=94.89 E-value=0.089 Score=41.49 Aligned_cols=60 Identities=18% Similarity=0.273 Sum_probs=46.4
Q ss_pred CHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhc--CCccCCeeeEEeeec
Q psy8956 47 DNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN--GHLIGSKPVIITFVE 111 (333)
Q Consensus 47 t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~--~~~~~g~~i~v~~~~ 111 (333)
..+.|+++|..|+.+..+..++. -+-..|.|.+.++|.+|...|+ +..+.|..+.+-|+.
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s-----FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~ 69 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS-----FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQ 69 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT-----TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE---
T ss_pred hHHHHHHHHHhcCCceEEEEcCC-----CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcc
Confidence 34779999999999988888874 5569999999999999999999 889999999998873
No 203
>KOG0804|consensus
Probab=94.88 E-value=0.11 Score=45.85 Aligned_cols=64 Identities=20% Similarity=0.349 Sum_probs=56.6
Q ss_pred cceEEEecCCCCCCHHHHHHHhhccCC-eeEEEeecC----CcEEEEEECCHHHHHHHHHHhCCCeeCC
Q psy8956 228 KNKIFVANLPSNINNSEFEELFARFGT-ITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKS 291 (333)
Q Consensus 228 ~~~l~v~nl~~~~~~~~l~~~f~~~g~-v~~v~i~~~----~~~~fV~f~~~~~A~~a~~~l~g~~l~g 291 (333)
++.|+|-.+|..++-.||..++..+-. |..++++++ +-.++|.|.+.++|..-.+.+||..|..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 789999999999999999999887654 788898887 4468999999999999999999998854
No 204
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=94.61 E-value=0.049 Score=37.02 Aligned_cols=73 Identities=21% Similarity=0.221 Sum_probs=47.9
Q ss_pred EEEEeCCHHHHHHHHHHhcCC-ccCCeeeEEeeeccCCCCCCCCCCCCcccCCCCeEEEeCCCCCCCHHHHHHHhh
Q psy8956 78 AIIVFNTPAEAKKARVEMNGH-LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFI 152 (333)
Q Consensus 78 a~v~f~~~e~A~~al~~l~~~-~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~ 152 (333)
|+|+|..++-|++.++.-... .+.+..+.|..+........+ -.-......+++.|.|||...++++++..++
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k--~qv~~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQK--FQVFSGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceE--EEEEEcccCCEEEEeCCCCCCChhhheeeEE
Confidence 789999999999999653222 366777766644222211111 1112334567899999999999999887654
No 205
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=94.30 E-value=0.38 Score=30.78 Aligned_cols=56 Identities=14% Similarity=0.288 Sum_probs=45.8
Q ss_pred CCCCHHHHHHHhhccCCeeEEEeecCCcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEE
Q psy8956 238 SNINNSEFEELFARFGTITSSSLVSDKHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296 (333)
Q Consensus 238 ~~~~~~~l~~~f~~~g~v~~v~i~~~~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v 296 (333)
..++-++++.-+..|+- .+|..++.--||-|.+.++|+++....+|..+.+..+.+
T Consensus 10 ~~~~v~d~K~~Lr~y~~---~~I~~d~tGfYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 10 HGVTVEDFKKRLRKYRW---DRIRDDRTGFYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CCccHHHHHHHHhcCCc---ceEEecCCEEEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 35788999999999964 355556555689999999999999999999998877654
No 206
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=94.18 E-value=0.081 Score=41.56 Aligned_cols=76 Identities=21% Similarity=0.292 Sum_probs=51.0
Q ss_pred ccceEEEecCCCCCCHHHHHHHhhc-cCCe---eEEEeecC--------CcEEEEEECCHHHHHHHHHHhCCCeeCC---
Q psy8956 227 RKNKIFVANLPSNINNSEFEELFAR-FGTI---TSSSLVSD--------KHIGFIEFIMPKHATHAVSTMNGHVFKS--- 291 (333)
Q Consensus 227 ~~~~l~v~nl~~~~~~~~l~~~f~~-~g~v---~~v~i~~~--------~~~~fV~f~~~~~A~~a~~~l~g~~l~g--- 291 (333)
....|.|.+||+.++++++.+.++. ++.- ..+.-... ..-|||.|.+.+++......++|+.|-+
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 4468999999999999999887776 5554 23321111 3368999999999999999999988743
Q ss_pred --eeEEEEecCCC
Q psy8956 292 --KPLKVTLSGTK 302 (333)
Q Consensus 292 --~~l~v~~a~~~ 302 (333)
.+..|.+|.-.
T Consensus 86 ~~~~~~VE~Apyq 98 (176)
T PF03467_consen 86 NEYPAVVEFAPYQ 98 (176)
T ss_dssp -EEEEEEEE-SS-
T ss_pred CCcceeEEEcchh
Confidence 45677777663
No 207
>KOG4285|consensus
Probab=93.98 E-value=0.25 Score=41.21 Aligned_cols=69 Identities=23% Similarity=0.305 Sum_probs=53.2
Q ss_pred ceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecCCcEEEEEECCHHHHHHHHHHhCCCeeCCee-EEEEec
Q psy8956 229 NKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKHIGFIEFIMPKHATHAVSTMNGHVFKSKP-LKVTLS 299 (333)
Q Consensus 229 ~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~-l~v~~a 299 (333)
.=+-|-++|.. .-.-|-.+|++||.|.+......-++.+|.|.+.-+|.+||. -||+.|+|-. |-|...
T Consensus 198 ~WVTVfGFppg-~~s~vL~~F~~cG~Vvkhv~~~ngNwMhirYssr~~A~KALs-kng~ii~g~vmiGVkpC 267 (350)
T KOG4285|consen 198 TWVTVFGFPPG-QVSIVLNLFSRCGEVVKHVTPSNGNWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKPC 267 (350)
T ss_pred ceEEEeccCcc-chhHHHHHHHhhCeeeeeecCCCCceEEEEecchhHHHHhhh-hcCeeeccceEEeeeec
Confidence 34555667654 345677889999999887777667799999999999999998 7999998744 455553
No 208
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=93.76 E-value=0.12 Score=34.20 Aligned_cols=59 Identities=15% Similarity=0.271 Sum_probs=36.6
Q ss_pred CCCCHHHHHHHhhccCCe-----eEEEeecCCcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEec
Q psy8956 238 SNINNSEFEELFARFGTI-----TSSSLVSDKHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299 (333)
Q Consensus 238 ~~~~~~~l~~~f~~~g~v-----~~v~i~~~~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~a 299 (333)
..++..+|..++...+.+ -.+.+. ..++||+-.. +.|..+++.|++..+.|++|+|..|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~--~~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIF--DNFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE---SS-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEe--eeEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 467888888888776554 446665 5699999866 5899999999999999999999875
No 209
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=93.75 E-value=0.12 Score=35.09 Aligned_cols=73 Identities=12% Similarity=0.229 Sum_probs=49.7
Q ss_pred EEEEeCCHHHHHHHHHHhC-CceeccceeEEEeeeecCCCccCCCCCCCCCCCCccceEEEecCCCCCCHHHHHHHhh
Q psy8956 174 GFIQFFSYKAAEKAIIEMN-GRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFA 250 (333)
Q Consensus 174 ~~v~f~~~~~a~~a~~~l~-~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~ 250 (333)
|+|+|.+..-|...++.-. ...+.+..+.|............ -........+++.|+|||...++++|++.++
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k----~qv~~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQK----FQVFSGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceE----EEEEEcccCCEEEEeCCCCCCChhhheeeEE
Confidence 6789999999999887532 23366777777666443331111 1112334568999999999999999988765
No 210
>KOG2135|consensus
Probab=92.87 E-value=0.14 Score=45.49 Aligned_cols=75 Identities=17% Similarity=0.306 Sum_probs=61.0
Q ss_pred cceEEEecCCCCC-CHHHHHHHhhccCCeeEEEeecCCcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEecCCCC
Q psy8956 228 KNKIFVANLPSNI-NNSEFEELFARFGTITSSSLVSDKHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKP 303 (333)
Q Consensus 228 ~~~l~v~nl~~~~-~~~~l~~~f~~~g~v~~v~i~~~~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~a~~~~ 303 (333)
.+.|-+.-.|... +..+|..-|-+||.|..|.+......|.|+|.+..+|-+|.. .++..|+|+.|+|.|-+...
T Consensus 372 hs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnps~ 447 (526)
T KOG2135|consen 372 HSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSSLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNPSP 447 (526)
T ss_pred cchhhhhccCCCCchHhhhhhhhhhcCccccccccCchhhheeeeeccccccchhc-cccceecCceeEEEEecCCc
Confidence 3445555555443 457899999999999999887666789999999999988877 78999999999999998744
No 211
>KOG2591|consensus
Probab=92.55 E-value=0.62 Score=42.37 Aligned_cols=71 Identities=15% Similarity=0.308 Sum_probs=54.9
Q ss_pred ccceEEEecCCCCCCHHHHHHHhhc--cCCeeEEEeecCCcEEEEEECCHHHHHHHHHHhCCC--eeCCeeEEEEe
Q psy8956 227 RKNKIFVANLPSNINNSEFEELFAR--FGTITSSSLVSDKHIGFIEFIMPKHATHAVSTMNGH--VFKSKPLKVTL 298 (333)
Q Consensus 227 ~~~~l~v~nl~~~~~~~~l~~~f~~--~g~v~~v~i~~~~~~~fV~f~~~~~A~~a~~~l~g~--~l~g~~l~v~~ 298 (333)
..+.+++..||.....|+++.+|+. +-++.+|.+-.. .-=||+|.+..||+.|..-|... .|.|++|..+.
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N-~nWyITfesd~DAQqAykylreevk~fqgKpImARI 248 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHN-DNWYITFESDTDAQQAYKYLREEVKTFQGKPIMARI 248 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeec-CceEEEeecchhHHHHHHHHHHHHHhhcCcchhhhh
Confidence 3467899999999999999999964 667777777544 34489999999999998877643 46677665443
No 212
>KOG4019|consensus
Probab=92.10 E-value=0.32 Score=37.52 Aligned_cols=74 Identities=20% Similarity=0.294 Sum_probs=56.1
Q ss_pred ceEEEecCCCCCC-----HHHHHHHhhccCCeeEEEeecCCcEEEEEECCHHHHHHHHHHhCCCeeCCe-eEEEEecCCC
Q psy8956 229 NKIFVANLPSNIN-----NSEFEELFARFGTITSSSLVSDKHIGFIEFIMPKHATHAVSTMNGHVFKSK-PLKVTLSGTK 302 (333)
Q Consensus 229 ~~l~v~nl~~~~~-----~~~l~~~f~~~g~v~~v~i~~~~~~~fV~f~~~~~A~~a~~~l~g~~l~g~-~l~v~~a~~~ 302 (333)
..+.+.+++..+- ......+|.+|....-.++++..+...|.|.+.+.|..|...++++.|.|+ .+++-++..-
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ~~ 90 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRSFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQPG 90 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHhhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEccCC
Confidence 4466667764432 233556677777776667776677888999999999999999999999998 8888888653
No 213
>KOG2135|consensus
Probab=92.03 E-value=0.16 Score=45.06 Aligned_cols=76 Identities=20% Similarity=0.325 Sum_probs=63.4
Q ss_pred cccccceEEEeCCCCCC-CHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEe
Q psy8956 30 KVYKENELHVNNLEPSV-DNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIIT 108 (333)
Q Consensus 30 ~~~~~~~l~V~nLp~~~-t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~ 108 (333)
-...++.+-+.-.|+.+ |..+|...|-+||.|..|.+-.. .-.|.|+|.+..+|-.|- ..++..|.++.|++.
T Consensus 368 ~~~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~-----~~~a~vTF~t~aeag~a~-~s~~avlnnr~iKl~ 441 (526)
T KOG2135|consen 368 AVVDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS-----SLHAVVTFKTRAEAGEAY-ASHGAVLNNRFIKLF 441 (526)
T ss_pred hhcccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc-----hhhheeeeeccccccchh-ccccceecCceeEEE
Confidence 34566677788888887 88889999999999999988765 345999999999997776 458999999999999
Q ss_pred eec
Q psy8956 109 FVE 111 (333)
Q Consensus 109 ~~~ 111 (333)
|..
T Consensus 442 whn 444 (526)
T KOG2135|consen 442 WHN 444 (526)
T ss_pred Eec
Confidence 884
No 214
>KOG4574|consensus
Probab=91.17 E-value=0.17 Score=48.11 Aligned_cols=69 Identities=16% Similarity=0.309 Sum_probs=56.7
Q ss_pred EEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCc--cCCeeeEEeeec
Q psy8956 38 HVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHL--IGSKPVIITFVE 111 (333)
Q Consensus 38 ~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~--~~g~~i~v~~~~ 111 (333)
.+-|.+-..+-..|.-+|..||.|.+.+.+++ -.+|.|+|.+.+.|..|++.|+|+. .-|...+|.++.
T Consensus 302 ~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~-----~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak 372 (1007)
T KOG4574|consen 302 SLENNAVNLTSSSLATLCSDYGSVASAWTLRD-----LNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAK 372 (1007)
T ss_pred hhhcccccchHHHHHHHHHhhcchhhheeccc-----ccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecc
Confidence 34444556677788999999999999988876 4579999999999999999999997 467777887764
No 215
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=90.41 E-value=9.9 Score=32.08 Aligned_cols=163 Identities=13% Similarity=0.257 Sum_probs=104.8
Q ss_pred cccCCCCeEEEeCCCCCCCHHHHHHHhhccCceEEEEEEeCC--------CCCceeEEEEEeCCHHHHHHH----HHHhC
Q psy8956 125 EKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE--------NGKSKGFGFIQFFSYKAAEKA----IIEMN 192 (333)
Q Consensus 125 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~--------~~~~~~~~~v~f~~~~~a~~a----~~~l~ 192 (333)
......+.|...|+...++-..+...|-+||+|+++.+..+. .........+-|-+.+.|-.. ++.|.
T Consensus 10 dD~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLs 89 (309)
T PF10567_consen 10 DDEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLS 89 (309)
T ss_pred CccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHH
Confidence 344567789999999999999999999999999999998875 233456788889898887654 33333
Q ss_pred C--ceeccceeEEEeeeecCCCccC-----CCC--------CCCCCCCCccceEEEecCCCCCCHHHHHHHh---hccCC
Q psy8956 193 G--RMIQHNSTFVSLAEIVPGKKVF-----PKV--------KPPLLQPARKNKIFVANLPSNINNSEFEELF---ARFGT 254 (333)
Q Consensus 193 ~--~~~~~~~i~v~~~~~~~~~~~~-----~~~--------~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f---~~~g~ 254 (333)
. ..+....+.+.+.......... ... .-......-+|.|.|.--.....++-+.+.+ ..-+.
T Consensus 90 EfK~~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~IeF~~~~~~~dl~~~kL~fL~~~~n 169 (309)
T PF10567_consen 90 EFKTKLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIEFKDPVDKDDLIEKKLPFLKNSNN 169 (309)
T ss_pred HHHHhcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEEecCccchhHHHHHhhhhhccCCC
Confidence 3 2356667777776542222111 000 1112233446778887554333444343333 22232
Q ss_pred ----eeEEEeecC--------CcEEEEEECCHHHHHHHHHHhCCC
Q psy8956 255 ----ITSSSLVSD--------KHIGFIEFIMPKHATHAVSTMNGH 287 (333)
Q Consensus 255 ----v~~v~i~~~--------~~~~fV~f~~~~~A~~a~~~l~g~ 287 (333)
+++|.++.. ..||.++|-+..=|...+.-+.-.
T Consensus 170 ~RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk~~ 214 (309)
T PF10567_consen 170 KRYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLKSN 214 (309)
T ss_pred ceEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHHhc
Confidence 566666654 779999999999998888877633
No 216
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=89.84 E-value=1.9 Score=28.36 Aligned_cols=57 Identities=14% Similarity=0.223 Sum_probs=35.2
Q ss_pred CCCHHHHHHHHhcCC-----CeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEee
Q psy8956 45 SVDNQALINEFKKFG-----TLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITF 109 (333)
Q Consensus 45 ~~t~~~l~~~f~~~g-----~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~ 109 (333)
.++..+|..++...+ .|-.|.|.. .|+||+-+.. .|..+++.|++..+.|+.+.|+.
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I~~-------~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~ 73 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDIFD-------NFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVER 73 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE-S-------S-EEEEE-TT--HHHHHHHHTT--SSS----EEE
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEEee-------eEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEE
Confidence 578888999987764 344666664 4799988776 77889999999999999999875
No 217
>KOG2253|consensus
Probab=87.98 E-value=0.54 Score=43.68 Aligned_cols=73 Identities=16% Similarity=0.262 Sum_probs=63.9
Q ss_pred CCCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecCCcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEec
Q psy8956 224 QPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299 (333)
Q Consensus 224 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~a 299 (333)
..++..++||+|+...+..+-++.++..+|.|...... .|||-.|..+..+.+|+..++-..++|..+.+.--
T Consensus 36 ~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~---~fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d 108 (668)
T KOG2253|consen 36 PLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRD---KFGFCEFLKHIGDLRASRLLTELNIDDQKLIENVD 108 (668)
T ss_pred CCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhh---hhcccchhhHHHHHHHHHHhcccCCCcchhhccch
Confidence 44566899999999999999999999999999777665 39999999999999999999999999988877663
No 218
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=87.14 E-value=2.9 Score=28.22 Aligned_cols=57 Identities=7% Similarity=0.087 Sum_probs=45.1
Q ss_pred EEEeCCCCCCCHHHHHHHHhc-CC-CeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHh
Q psy8956 37 LHVNNLEPSVDNQALINEFKK-FG-TLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEM 95 (333)
Q Consensus 37 l~V~nLp~~~t~~~l~~~f~~-~g-~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l 95 (333)
-|.--.+..++..+|++.++. || .|.+|+.+....+ ..-|||.+....+|......+
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~--~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKG--EKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCC--cEEEEEEeCCCCcHHHHHHhh
Confidence 444447899999999999988 78 8888888776644 445999999999998876553
No 219
>KOG2318|consensus
Probab=85.49 E-value=3.8 Score=37.81 Aligned_cols=81 Identities=20% Similarity=0.274 Sum_probs=63.9
Q ss_pred ccccceEEEeCCCCC-CCHHHHHHHHhcC----CCeeEEEEeeCCCC-----------C---------------------
Q psy8956 31 VYKENELHVNNLEPS-VDNQALINEFKKF----GTLRDVRVARNKND-----------E--------------------- 73 (333)
Q Consensus 31 ~~~~~~l~V~nLp~~-~t~~~l~~~f~~~----g~v~~v~i~~~~~~-----------~--------------------- 73 (333)
...+++|-|-|+.|. +...+|.-+|+.| |.|.+|.|++...| .
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 356789999999996 6889998887664 48999999876533 1
Q ss_pred ----------------cccEEEEEeCCHHHHHHHHHHhcCCccCC--eeeEEeeec
Q psy8956 74 ----------------SRGFAIIVFNTPAEAKKARVEMNGHLIGS--KPVIITFVE 111 (333)
Q Consensus 74 ----------------~~g~a~v~f~~~e~A~~al~~l~~~~~~g--~~i~v~~~~ 111 (333)
-+-||.|+|.+++.|....+.|+|..+.. ..+.++|..
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFIP 306 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFIP 306 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeecC
Confidence 13479999999999999999999998754 566666663
No 220
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=83.04 E-value=6.4 Score=26.10 Aligned_cols=56 Identities=9% Similarity=0.062 Sum_probs=43.6
Q ss_pred EEEeCCCCCCCHHHHHHHHhc-CC-CeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHH
Q psy8956 37 LHVNNLEPSVDNQALINEFKK-FG-TLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVE 94 (333)
Q Consensus 37 l~V~nLp~~~t~~~l~~~f~~-~g-~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~ 94 (333)
-|+-.++..++..+|++.++. || .|.+|+....+.+ ..-|||++...+.|...-..
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~--~KKA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRG--EKKAYVKLAEEYAAEEIASR 73 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCC--ceEEEEEECCCCcHHHHHHh
Confidence 455567899999999999988 77 8888877766543 45599999998888776544
No 221
>KOG2253|consensus
Probab=81.22 E-value=1 Score=41.98 Aligned_cols=70 Identities=14% Similarity=0.121 Sum_probs=60.2
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEee
Q psy8956 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITF 109 (333)
Q Consensus 32 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~ 109 (333)
-+.-++||+|+...+..+-++..+..||.|.++.... |+|+.|.....+.+|+..|+...+.|..+.+..
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~--------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK--------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh--------hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 4556799999999999999999999999887654442 899999999999999988888889888877764
No 222
>KOG2318|consensus
Probab=79.07 E-value=15 Score=34.15 Aligned_cols=80 Identities=16% Similarity=0.235 Sum_probs=63.5
Q ss_pred CCccceEEEecCCC-CCCHHHHHHHhhcc----CCeeEEEeecC--------------C---------------------
Q psy8956 225 PARKNKIFVANLPS-NINNSEFEELFARF----GTITSSSLVSD--------------K--------------------- 264 (333)
Q Consensus 225 ~~~~~~l~v~nl~~-~~~~~~l~~~f~~~----g~v~~v~i~~~--------------~--------------------- 264 (333)
...+++|=|.|+.. .+...||..+|+.| |.|.+|.|.+. .
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 45678899999994 57889998888643 36888888765 1
Q ss_pred ------------------cEEEEEECCHHHHHHHHHHhCCCeeC--CeeEEEEecCCCCC
Q psy8956 265 ------------------HIGFIEFIMPKHATHAVSTMNGHVFK--SKPLKVTLSGTKPG 304 (333)
Q Consensus 265 ------------------~~~fV~f~~~~~A~~a~~~l~g~~l~--g~~l~v~~a~~~~~ 304 (333)
-||.|+|.+...|....+.+.|..|. |..|-++|-...-.
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFIPDdm~ 310 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFIPDDMT 310 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeecCCCCc
Confidence 16899999999999999999999997 67788888765433
No 223
>KOG2891|consensus
Probab=77.88 E-value=0.91 Score=37.50 Aligned_cols=79 Identities=18% Similarity=0.385 Sum_probs=52.5
Q ss_pred CCCccceEEEecCCCC------------CCHHHHHHHhhccCCeeEEEeecC----------------CcE---------
Q psy8956 224 QPARKNKIFVANLPSN------------INNSEFEELFARFGTITSSSLVSD----------------KHI--------- 266 (333)
Q Consensus 224 ~~~~~~~l~v~nl~~~------------~~~~~l~~~f~~~g~v~~v~i~~~----------------~~~--------- 266 (333)
......|+++.++|-. .+++-|+..|+.||.|..|.|+.. ++|
T Consensus 145 pgerpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffe 224 (445)
T KOG2891|consen 145 PGERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFE 224 (445)
T ss_pred CCCCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHH
Confidence 3344567888888743 356779999999999998887654 233
Q ss_pred EEEEECCHHHHHHHHHHhCCCee----CC----eeEEEEecCCC
Q psy8956 267 GFIEFIMPKHATHAVSTMNGHVF----KS----KPLKVTLSGTK 302 (333)
Q Consensus 267 ~fV~f~~~~~A~~a~~~l~g~~l----~g----~~l~v~~a~~~ 302 (333)
|||+|-.-.--..||..|.|..+ +| -.++|.|...+
T Consensus 225 ayvqfmeykgfa~amdalr~~k~akk~d~~ffqanvkvdfdrsr 268 (445)
T KOG2891|consen 225 AYVQFMEYKGFAQAMDALRGMKLAKKGDDGFFQANVKVDFDRSR 268 (445)
T ss_pred HHHHHHHHHhHHHHHHHHhcchHHhhcCCcccccccccccchhh
Confidence 35666555556678888888764 23 35666665443
No 224
>KOG4410|consensus
Probab=76.74 E-value=3.3 Score=34.47 Aligned_cols=49 Identities=14% Similarity=0.241 Sum_probs=37.2
Q ss_pred ccceEEEeCCCCCCCHHHHHHHHhcCCCe-eEEEEeeCCCCCcccEEEEEeCCHH
Q psy8956 33 KENELHVNNLEPSVDNQALINEFKKFGTL-RDVRVARNKNDESRGFAIIVFNTPA 86 (333)
Q Consensus 33 ~~~~l~V~nLp~~~t~~~l~~~f~~~g~v-~~v~i~~~~~~~~~g~a~v~f~~~e 86 (333)
...-|+++|||.++-..||+..+.+.|.+ .++.+ ..+.|-||+.|.+..
T Consensus 329 ~~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw-----kg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 329 AKTDIKLTNLSRDIRVKDLKSELRKRECTPMSISW-----KGHFGKCFLHFGNRK 378 (396)
T ss_pred cccceeeccCccccchHHHHHHHHhcCCCceeEee-----ecCCcceeEecCCcc
Confidence 34459999999999999999999998743 33322 236788999997653
No 225
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=75.09 E-value=3.8 Score=29.71 Aligned_cols=48 Identities=27% Similarity=0.482 Sum_probs=27.5
Q ss_pred eEEEeCCCCC---------CCHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCH
Q psy8956 36 ELHVNNLEPS---------VDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTP 85 (333)
Q Consensus 36 ~l~V~nLp~~---------~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~ 85 (333)
.+.|.|+|.. .+.++|.+.|..|.++. ++.+.+.. .+.|+|+|+|..-
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~~-gh~g~aiv~F~~~ 66 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGKQ-GHTGFAIVEFNKD 66 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEETT-EEEEEEEEE--SS
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCCC-CCcEEEEEEECCC
Confidence 3667777543 35678999999999875 66666655 3789999999654
No 226
>KOG4483|consensus
Probab=73.41 E-value=8.1 Score=33.98 Aligned_cols=56 Identities=16% Similarity=0.274 Sum_probs=45.7
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhcCC-CeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHH
Q psy8956 32 YKENELHVNNLEPSVDNQALINEFKKFG-TLRDVRVARNKNDESRGFAIIVFNTPAEAKKARV 93 (333)
Q Consensus 32 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g-~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~ 93 (333)
+=.+.|-|.++|.....+||...|+.|+ .--+|+++.+ .+||-.|.+...|..||.
T Consensus 389 dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd------thalaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 389 DLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD------THALAVFSSVNRAAEALT 445 (528)
T ss_pred cccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec------ceeEEeecchHHHHHHhh
Confidence 3457889999999998888999999997 3345666643 479999999999999994
No 227
>KOG2295|consensus
Probab=64.70 E-value=1 Score=41.00 Aligned_cols=75 Identities=19% Similarity=0.197 Sum_probs=56.0
Q ss_pred CcccccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCe
Q psy8956 29 NKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSK 103 (333)
Q Consensus 29 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~-~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~ 103 (333)
.+..+.+.++++|++++.+.++|..++..+.-+..+-+-... ......+.+|.|.---....|+..||+..+...
T Consensus 226 ~n~hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~ 301 (648)
T KOG2295|consen 226 DNTHKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSN 301 (648)
T ss_pred hhhhHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccccc
Confidence 345788999999999999999999999998866655433333 344567789999877777777777777665443
No 228
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=64.22 E-value=11 Score=24.37 Aligned_cols=59 Identities=10% Similarity=0.197 Sum_probs=44.3
Q ss_pred HHHHHHHhcCC-CeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeee
Q psy8956 49 QALINEFKKFG-TLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFV 110 (333)
Q Consensus 49 ~~l~~~f~~~g-~v~~v~i~~~~-~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~~ 110 (333)
++|.+.|...| +|..+.-+... ++......||+.....+...++ +=+.+++..++|+..
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i~---~Ik~l~~~~V~vE~~ 62 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEIY---KIKTLCGQRVKVERP 62 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCcccccee---ehHhhCCeEEEEecC
Confidence 56889999999 88888777776 6667778888887776655444 335688999988844
No 229
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=60.62 E-value=13 Score=24.00 Aligned_cols=59 Identities=14% Similarity=0.199 Sum_probs=42.5
Q ss_pred HHHHHHHhcCC-CeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeee
Q psy8956 49 QALINEFKKFG-TLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFV 110 (333)
Q Consensus 49 ~~l~~~f~~~g-~v~~v~i~~~~-~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~~ 110 (333)
+.|.+.|..+| ++..+.-+... ++.....-+|+.....+-.. .++=+.++|+.+.|+..
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~ 62 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERP 62 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecC
Confidence 46888899999 88888777776 45566677888766655444 34456689999988843
No 230
>KOG4483|consensus
Probab=60.58 E-value=23 Score=31.35 Aligned_cols=56 Identities=13% Similarity=0.218 Sum_probs=45.5
Q ss_pred ccceEEEecCCCCCCHHHHHHHhhccCCe-eEEEeecCCcEEEEEECCHHHHHHHHHH
Q psy8956 227 RKNKIFVANLPSNINNSEFEELFARFGTI-TSSSLVSDKHIGFIEFIMPKHATHAVST 283 (333)
Q Consensus 227 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v-~~v~i~~~~~~~fV~f~~~~~A~~a~~~ 283 (333)
-..+|-|.++|.....+||...|+.|+.- -+|.++.+ ..+|--|.+...|..|+-.
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd-thalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD-THALAVFSSVNRAAEALTL 446 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec-ceeEEeecchHHHHHHhhc
Confidence 34689999999999999999999999863 44566544 7888889999999988874
No 231
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=60.28 E-value=38 Score=25.52 Aligned_cols=56 Identities=11% Similarity=0.102 Sum_probs=41.2
Q ss_pred EEEeCCCCCCCHHHHHHHHhc-CC-CeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHH
Q psy8956 37 LHVNNLEPSVDNQALINEFKK-FG-TLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVE 94 (333)
Q Consensus 37 l~V~nLp~~~t~~~l~~~f~~-~g-~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~ 94 (333)
-|+--++...+..+|++.++. || .|..|..+....| ..-|||.+....+|...-+.
T Consensus 84 ~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~g--~KKA~V~L~~~~~aidva~k 141 (145)
T PTZ00191 84 TLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPDG--LKKAYIRLSPDVDALDVANK 141 (145)
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCCC--ceEEEEEECCCCcHHHHHHh
Confidence 445557789999999999988 77 7777777766554 33599999888776655443
No 232
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=56.82 E-value=11 Score=28.59 Aligned_cols=119 Identities=16% Similarity=0.059 Sum_probs=71.2
Q ss_pred EEEeCCC--CCCCHHHHHHHHhc-CCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeeccC
Q psy8956 37 LHVNNLE--PSVDNQALINEFKK-FGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELK 113 (333)
Q Consensus 37 l~V~nLp--~~~t~~~l~~~f~~-~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~~~~~ 113 (333)
..|+.+. ...+-..|.+.+.. .+..-.+.+..- ..++..++|.+.+++.+++.. ....+.+..+.++.-.+.
T Consensus 18 ~lVg~~l~~~~~~~~~l~~~l~~~W~~~~~~~i~~l----~~~~fl~~F~~~~d~~~vl~~-~p~~~~~~~~~l~~W~~~ 92 (153)
T PF14111_consen 18 CLVGRVLSPKPISLSALEQELAKIWKLKGGVKIRDL----GDNLFLFQFESEEDRQRVLKG-GPWNFNGHFLILQRWSPD 92 (153)
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHhCCCCcEEEEEe----CCCeEEEEEEeccceeEEEec-ccccccccchhhhhhccc
Confidence 4455453 33566667666654 222222333332 257899999999999999853 555677777777743211
Q ss_pred CCCCCCCCCCCcccCCCCeEEEeCCCCC-CCHHHHHHHhhccCceEEEEEEeC
Q psy8956 114 PGQRSKPVGPEEKQYKKDKVFVKNLVET-VDEEELKSHFIKFGNIIEVKIVRD 165 (333)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~l~v~~l~~~-~~~~~l~~~f~~~g~v~~~~~~~~ 165 (333)
.... ...-....-=+.+.|||.. .+++.+..+.+..|.+..+.....
T Consensus 93 ~~~~-----~~~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t~ 140 (153)
T PF14111_consen 93 FNPS-----EVKFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENTL 140 (153)
T ss_pred cccc-----ccceeccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCCC
Confidence 1100 0000111223667899985 677888999999999887765543
No 233
>KOG1295|consensus
Probab=55.07 E-value=17 Score=31.92 Aligned_cols=68 Identities=18% Similarity=0.336 Sum_probs=48.1
Q ss_pred ccceEEEeCCCCCCCHHHHHHHHhcCC-CeeEEEEeeCCC---CCcccEEEEEeCCHHHHHHHHHHhcCCcc
Q psy8956 33 KENELHVNNLEPSVDNQALINEFKKFG-TLRDVRVARNKN---DESRGFAIIVFNTPAEAKKARVEMNGHLI 100 (333)
Q Consensus 33 ~~~~l~V~nLp~~~t~~~l~~~f~~~g-~v~~v~i~~~~~---~~~~g~a~v~f~~~e~A~~al~~l~~~~~ 100 (333)
-...|.|.+||+..+++++.+.+..+- .+......+... ..-.+.|||-|.++++........+|..+
T Consensus 6 ~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 6 AKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred cceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 346799999999999999998887755 232222222221 12356799999999998888877777754
No 234
>KOG4410|consensus
Probab=50.27 E-value=44 Score=28.16 Aligned_cols=49 Identities=20% Similarity=0.172 Sum_probs=38.9
Q ss_pred cceEEEecCCCCCCHHHHHHHhhccCCe-eEEEeecCCcEEEEEECCHHH
Q psy8956 228 KNKIFVANLPSNINNSEFEELFARFGTI-TSSSLVSDKHIGFIEFIMPKH 276 (333)
Q Consensus 228 ~~~l~v~nl~~~~~~~~l~~~f~~~g~v-~~v~i~~~~~~~fV~f~~~~~ 276 (333)
..-++++||+.++.-.||+..+.+-|.+ .++...-..+-||+.|.+...
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg~~~k~flh~~~~~~ 379 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWKGHFGKCFLHFGNRKG 379 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEeeecCCcceeEecCCccC
Confidence 3569999999999999999999887754 455555558889999986543
No 235
>KOG4019|consensus
Probab=49.96 E-value=13 Score=28.94 Aligned_cols=70 Identities=19% Similarity=0.275 Sum_probs=50.2
Q ss_pred eEEEeCCCCCC-C----HHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCe-eeEEee
Q psy8956 36 ELHVNNLEPSV-D----NQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSK-PVIITF 109 (333)
Q Consensus 36 ~l~V~nLp~~~-t----~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~-~i~v~~ 109 (333)
++.+.+++..+ + ......+|.+|.+..-.++++ +.+..-|-|.+++.|..|.-.+++..+.|+ .++.-+
T Consensus 12 ~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr-----sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yf 86 (193)
T KOG4019|consen 12 AIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR-----SFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYF 86 (193)
T ss_pred eeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH-----hhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEE
Confidence 46666676654 1 222456677777666555665 477889999999999999999999999888 555544
Q ss_pred e
Q psy8956 110 V 110 (333)
Q Consensus 110 ~ 110 (333)
+
T Consensus 87 a 87 (193)
T KOG4019|consen 87 A 87 (193)
T ss_pred c
Confidence 4
No 236
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=45.98 E-value=1.2e+02 Score=22.39 Aligned_cols=74 Identities=9% Similarity=0.050 Sum_probs=51.5
Q ss_pred eEEEecCCCC---CCHHHHHHHhhccCC-eeEEEeecCCcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEecC-CCCC
Q psy8956 230 KIFVANLPSN---INNSEFEELFARFGT-ITSSSLVSDKHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSG-TKPG 304 (333)
Q Consensus 230 ~l~v~nl~~~---~~~~~l~~~f~~~g~-v~~v~i~~~~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~a~-~~~~ 304 (333)
.|.|+..... .+-..+.+.++.-|- ++++.. +.+...|.|++.++-.+|.+.|....=++-.+.++++. ..+.
T Consensus 37 avQIs~~~~g~~~~~~~~v~~~L~~~gI~~ksi~~--~~~~~~irf~~~~~Ql~Ak~vL~~~L~~~y~VAlnl~p~~tP~ 114 (127)
T PRK10629 37 TLAIRAVHQGASLPDGFYVYQHLDANGIHIKSITP--ENDSLLIRFDSPEQSAAAKEVLDRTLPHGYIIAQQDDNSQAMQ 114 (127)
T ss_pred eEEEecCCCCCccchHHHHHHHHHHCCCCcceEEe--eCCEEEEEECCHHHHHHHHHHHHHHcCCCCEEEEecCCCcchH
Confidence 4555544222 466778888887764 444444 35688999999999999999988666566788888887 4443
Q ss_pred C
Q psy8956 305 V 305 (333)
Q Consensus 305 ~ 305 (333)
+
T Consensus 115 W 115 (127)
T PRK10629 115 W 115 (127)
T ss_pred H
Confidence 3
No 237
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=44.72 E-value=65 Score=20.32 Aligned_cols=21 Identities=19% Similarity=0.376 Sum_probs=16.2
Q ss_pred HHHHHHhhccCceEEEEEEeC
Q psy8956 145 EELKSHFIKFGNIIEVKIVRD 165 (333)
Q Consensus 145 ~~l~~~f~~~g~v~~~~~~~~ 165 (333)
.+|+++|+..|.|.-+.+-..
T Consensus 9 ~~iR~~fs~lG~I~vLYvn~~ 29 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVNPY 29 (62)
T ss_pred HHHHHHHHhcCcEEEEEEccc
Confidence 679999999999876555443
No 238
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=43.81 E-value=35 Score=25.75 Aligned_cols=111 Identities=10% Similarity=-0.021 Sum_probs=65.4
Q ss_pred CCCHHHHHHHhhc-cCceEEEEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeccceeEEEeeeecCCCccCCCCC
Q psy8956 141 TVDEEELKSHFIK-FGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVK 219 (333)
Q Consensus 141 ~~~~~~l~~~f~~-~g~v~~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~~~~~~~~~ 219 (333)
..+...|.+.+.. .+....+.+..- ..++..++|.+.+++.+++.. ..-.+.+..+.++.-.+.....
T Consensus 28 ~~~~~~l~~~l~~~W~~~~~~~i~~l----~~~~fl~~F~~~~d~~~vl~~-~p~~~~~~~~~l~~W~~~~~~~------ 96 (153)
T PF14111_consen 28 PISLSALEQELAKIWKLKGGVKIRDL----GDNLFLFQFESEEDRQRVLKG-GPWNFNGHFLILQRWSPDFNPS------ 96 (153)
T ss_pred CCCHHHHHHHHHHHhCCCCcEEEEEe----CCCeEEEEEEeccceeEEEec-ccccccccchhhhhhccccccc------
Confidence 3456666665554 232222233221 247899999999999999873 3344566555554433211100
Q ss_pred CCCCCCCccceEEEecCCC-CCCHHHHHHHhhccCCeeEEEeecC
Q psy8956 220 PPLLQPARKNKIFVANLPS-NINNSEFEELFARFGTITSSSLVSD 263 (333)
Q Consensus 220 ~~~~~~~~~~~l~v~nl~~-~~~~~~l~~~f~~~g~v~~v~i~~~ 263 (333)
.........=+.|.|||. -++++-++.+.+..|.+..+.....
T Consensus 97 -~~~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t~ 140 (153)
T PF14111_consen 97 -EVKFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENTL 140 (153)
T ss_pred -ccceeccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCCC
Confidence 000111223467789994 4788889999999999988776544
No 239
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=43.47 E-value=35 Score=29.76 Aligned_cols=36 Identities=17% Similarity=0.211 Sum_probs=27.4
Q ss_pred EEEEECCHHHHHHHHHHhCCCeeCCeeEEEEecCCCCC
Q psy8956 267 GFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKPG 304 (333)
Q Consensus 267 ~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~a~~~~~ 304 (333)
|||+|++..+|..|.+.+.... ++.+.+..|.+..+
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APeP~D 36 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPEPDD 36 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCCccc
Confidence 7999999999999999765543 35557777776544
No 240
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=40.16 E-value=14 Score=32.66 Aligned_cols=61 Identities=20% Similarity=0.214 Sum_probs=50.3
Q ss_pred ccceEEEeCCCCCCCHH--------HHHHHHhc--CCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHH
Q psy8956 33 KENELHVNNLEPSVDNQ--------ALINEFKK--FGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARV 93 (333)
Q Consensus 33 ~~~~l~V~nLp~~~t~~--------~l~~~f~~--~g~v~~v~i~~~~-~~~~~g~a~v~f~~~e~A~~al~ 93 (333)
..+.+|+.+.+...+.+ ++...|.. .+++..+.+.++. ...+.|..|++|.....|++++.
T Consensus 173 ~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 173 MQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred HhhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 45678888888766555 89999988 6788888888887 77789999999999999998873
No 241
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=39.73 E-value=63 Score=23.40 Aligned_cols=47 Identities=17% Similarity=0.317 Sum_probs=24.0
Q ss_pred eEEEecCCCC---------CCHHHHHHHhhccCCeeEEEeecC----CcEEEEEECCHHHH
Q psy8956 230 KIFVANLPSN---------INNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHA 277 (333)
Q Consensus 230 ~l~v~nl~~~---------~~~~~l~~~f~~~g~v~~v~i~~~----~~~~fV~f~~~~~A 277 (333)
+++|.|++.. ++-+.|.+.|..|.+++ ++.+.+ +++++|.|...-..
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~~gh~g~aiv~F~~~w~G 69 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGKQGHTGFAIVEFNKDWSG 69 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEETTEEEEEEEEE--SSHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCCCCCcEEEEEEECCChHH
Confidence 4566666432 45588999999999875 443333 67899999854433
No 242
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=38.92 E-value=48 Score=21.52 Aligned_cols=26 Identities=15% Similarity=0.110 Sum_probs=21.5
Q ss_pred cEEEEEECCHHHHHHHHHHhCCCeeC
Q psy8956 265 HIGFIEFIMPKHATHAVSTMNGHVFK 290 (333)
Q Consensus 265 ~~~fV~f~~~~~A~~a~~~l~g~~l~ 290 (333)
.+.+|.|.+..+|.+|-+.|...-+.
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~ 27 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIP 27 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCc
Confidence 46789999999999999988865443
No 243
>PF09902 DUF2129: Uncharacterized protein conserved in bacteria (DUF2129); InterPro: IPR016979 This is a group of uncharacterised conserved proteins.
Probab=37.15 E-value=1.1e+02 Score=19.92 Aligned_cols=39 Identities=10% Similarity=0.364 Sum_probs=27.8
Q ss_pred HHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCc
Q psy8956 53 NEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHL 99 (333)
Q Consensus 53 ~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~ 99 (333)
..+.+||.|..+ -+ -..||.+ |-+.+++...++.|....
T Consensus 15 r~L~kfG~i~Y~--Sk-----k~kYvvl-Yvn~~~~e~~~~kl~~l~ 53 (71)
T PF09902_consen 15 RQLRKFGDIHYV--SK-----KMKYVVL-YVNEEDVEEIIEKLKKLK 53 (71)
T ss_pred HhHhhcccEEEE--EC-----CccEEEE-EECHHHHHHHHHHHhcCC
Confidence 357889998754 22 1345554 899999999999886654
No 244
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=36.47 E-value=75 Score=27.67 Aligned_cols=31 Identities=16% Similarity=0.133 Sum_probs=22.9
Q ss_pred EEEEeCCHHHHHHHHHHhcCCccCCeeeEEeee
Q psy8956 78 AIIVFNTPAEAKKARVEMNGHLIGSKPVIITFV 110 (333)
Q Consensus 78 a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~~ 110 (333)
|||+|.+..+|..|.+.+.... .+.+.+..+
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~A 31 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPA 31 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeC
Confidence 7999999999999998655443 344456544
No 245
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=36.13 E-value=78 Score=21.27 Aligned_cols=34 Identities=15% Similarity=0.041 Sum_probs=23.9
Q ss_pred CeeEEEeecC-CcEEEEEECCHHHHHHHHHHhCCC
Q psy8956 254 TITSSSLVSD-KHIGFIEFIMPKHATHAVSTMNGH 287 (333)
Q Consensus 254 ~v~~v~i~~~-~~~~fV~f~~~~~A~~a~~~l~g~ 287 (333)
.|.++-...+ +||.||+=.+.+++..|++.+.+.
T Consensus 33 ~I~Si~~~~~lkGyIyVEA~~~~~V~~ai~gi~~i 67 (84)
T PF03439_consen 33 NIYSIFAPDSLKGYIYVEAERESDVKEAIRGIRHI 67 (84)
T ss_dssp ---EEEE-TTSTSEEEEEESSHHHHHHHHTT-TTE
T ss_pred ceEEEEEeCCCceEEEEEeCCHHHHHHHHhcccce
Confidence 3555555555 999999999999999998876653
No 246
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=35.47 E-value=2.1e+02 Score=25.65 Aligned_cols=38 Identities=11% Similarity=0.138 Sum_probs=31.4
Q ss_pred cEEEEEECCHHHHHHHHHHhCCCeeC--CeeEEEEecCCC
Q psy8956 265 HIGFIEFIMPKHATHAVSTMNGHVFK--SKPLKVTLSGTK 302 (333)
Q Consensus 265 ~~~fV~f~~~~~A~~a~~~l~g~~l~--g~~l~v~~a~~~ 302 (333)
-||.|.+.+...+......+.|..+. +..+-++|....
T Consensus 259 YyAvvec~d~~tsK~iY~~CDG~Eye~san~~DLRfvPD~ 298 (622)
T COG5638 259 YYAVVECEDIETSKNIYSACDGVEYENSANVLDLRFVPDS 298 (622)
T ss_pred EEEEEEeccchhhHHHHhccCccccccccceeeeeecCCC
Confidence 38999999999999999999999886 466777776543
No 247
>KOG3424|consensus
Probab=34.48 E-value=88 Score=22.57 Aligned_cols=47 Identities=26% Similarity=0.333 Sum_probs=30.8
Q ss_pred CCCCHHHHHHHHhc-C---CCeeEEEEeeCC--CCCcccEEEEEeCCHHHHHHH
Q psy8956 44 PSVDNQALINEFKK-F---GTLRDVRVARNK--NDESRGFAIIVFNTPAEAKKA 91 (333)
Q Consensus 44 ~~~t~~~l~~~f~~-~---g~v~~v~i~~~~--~~~~~g~a~v~f~~~e~A~~a 91 (333)
++++.+||++.+.+ | ..+..+-=++.. .|.+.|||.| |.+.+.|.+.
T Consensus 33 a~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~akkf 85 (132)
T KOG3424|consen 33 ANVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAKKF 85 (132)
T ss_pred CCCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHHhc
Confidence 35678888877654 3 233333334444 5778999988 8999888743
No 248
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=33.23 E-value=1.2e+02 Score=18.56 Aligned_cols=54 Identities=7% Similarity=0.099 Sum_probs=40.0
Q ss_pred eEEEecCCCCCCHHHHHHHhhccCCeeEEEeecCCcEEEEEECCH----HHHHHHHHH
Q psy8956 230 KIFVANLPSNINNSEFEELFARFGTITSSSLVSDKHIGFIEFIMP----KHATHAVST 283 (333)
Q Consensus 230 ~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~~~~~fV~f~~~----~~A~~a~~~ 283 (333)
|+.|.|+.=.--...+.+.+...-.|.++.+....+.+-|.|... ++..++++.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLETKTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCCCEEEEEEecCCCCHHHHHHHHHH
Confidence 456666665555677888898888899999988889999999854 445555553
No 249
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=33.05 E-value=78 Score=20.51 Aligned_cols=27 Identities=22% Similarity=0.266 Sum_probs=21.5
Q ss_pred cEEEEEeCCHHHHHHHHHHhcCCccCC
Q psy8956 76 GFAIIVFNTPAEAKKARVEMNGHLIGS 102 (333)
Q Consensus 76 g~a~v~f~~~e~A~~al~~l~~~~~~g 102 (333)
.+++|.|.+..+|.+|-+.|...-+..
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~~ 28 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIPV 28 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCcE
Confidence 368999999999999998876654433
No 250
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=32.83 E-value=17 Score=31.66 Aligned_cols=50 Identities=14% Similarity=0.219 Sum_probs=40.0
Q ss_pred CCHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCC
Q psy8956 46 VDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98 (333)
Q Consensus 46 ~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~ 98 (333)
++...+.+++.++|.|..-.|++.. |.|.+|+-.-.++++.++++.|.+.
T Consensus 273 ~~~p~iF~~i~~~G~v~~~EM~rtF---NmGvG~v~iv~~e~~~~~~~~l~~~ 322 (345)
T COG0150 273 WPPPPIFKWLQKAGNVEREEMYRTF---NMGVGMVLIVPEEDAEKALALLKEQ 322 (345)
T ss_pred CCCcHHHHHHHHhcCCCHHHHHHHh---cCccceEEEEcHHHHHHHHHHHHhc
Confidence 3356799999999988654455544 5889999999999999999998764
No 251
>PF14893 PNMA: PNMA
Probab=31.36 E-value=38 Score=29.66 Aligned_cols=74 Identities=11% Similarity=0.138 Sum_probs=41.0
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhc----CCCe--eEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeee
Q psy8956 32 YKENELHVNNLEPSVDNQALINEFKK----FGTL--RDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPV 105 (333)
Q Consensus 32 ~~~~~l~V~nLp~~~t~~~l~~~f~~----~g~v--~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i 105 (333)
...+.|+|.|||.++++.+|.+.++. .|.. .. ++++... +..-|+|+|...-+-...= ....-.|..+
T Consensus 16 ~~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~-~~f~~~~--~~~aalve~~e~~n~~~iP---~~i~g~gg~W 89 (331)
T PF14893_consen 16 DPQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLG-KMFRREE--NAKAALVEFAEDVNYSLIP---REIPGKGGPW 89 (331)
T ss_pred ChhhhheeecCCCCCCHHHHHHHHHHhhcccccceehh-hHhhhhc--ccceeeeecccccchhhCc---hhcCCCCCce
Confidence 45577999999999999999888654 4422 11 1122111 2445778776433321111 1111245667
Q ss_pred EEeeec
Q psy8956 106 IITFVE 111 (333)
Q Consensus 106 ~v~~~~ 111 (333)
+|-+..
T Consensus 90 ~Vv~~p 95 (331)
T PF14893_consen 90 RVVFKP 95 (331)
T ss_pred EEEecC
Confidence 766553
No 252
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=30.53 E-value=1.7e+02 Score=20.51 Aligned_cols=46 Identities=13% Similarity=0.364 Sum_probs=27.8
Q ss_pred CCCHHHHHHHHhc-CCCeeEEEEe---eCC--CCCcccEEEEEeCCHHHHHHH
Q psy8956 45 SVDNQALINEFKK-FGTLRDVRVA---RNK--NDESRGFAIIVFNTPAEAKKA 91 (333)
Q Consensus 45 ~~t~~~l~~~f~~-~g~v~~v~i~---~~~--~~~~~g~a~v~f~~~e~A~~a 91 (333)
+.+..+|++.+.. |+.-.+..++ +.. .|.+.|||.| |.+.+.|++.
T Consensus 30 tpsr~eirekLa~~~~~~~~~vvv~~~~t~fG~g~s~G~a~I-Yds~e~~kk~ 81 (99)
T PRK01178 30 TPSRKDVRKKLAAMLNADKELVVVRKIKTEYGMGKSKGYAKV-YDDKERARKI 81 (99)
T ss_pred CCCHHHHHHHHHHHHCcCCCEEEEEccCccCCCceEEEEEEE-ECCHHHHHhh
Confidence 5577778766543 5522222222 222 3568888888 8888888754
No 253
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=29.69 E-value=46 Score=18.40 Aligned_cols=17 Identities=18% Similarity=0.177 Sum_probs=14.5
Q ss_pred CCCHHHHHHHHhcCCCe
Q psy8956 45 SVDNQALINEFKKFGTL 61 (333)
Q Consensus 45 ~~t~~~l~~~f~~~g~v 61 (333)
.++.++|++++..+|-+
T Consensus 3 tWs~~~L~~wL~~~gi~ 19 (38)
T PF10281_consen 3 TWSDSDLKSWLKSHGIP 19 (38)
T ss_pred CCCHHHHHHHHHHcCCC
Confidence 57899999999999844
No 254
>PRK11901 hypothetical protein; Reviewed
Probab=28.46 E-value=1.9e+02 Score=25.25 Aligned_cols=63 Identities=19% Similarity=0.166 Sum_probs=40.9
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCC-CCCcc-cEEEEEeCCHHHHHHHHHHhcCC
Q psy8956 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESR-GFAIIVFNTPAEAKKARVEMNGH 98 (333)
Q Consensus 32 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~-~~~~~-g~a~v~f~~~e~A~~al~~l~~~ 98 (333)
..+.+|-|..+ ..++.|..|..+++ +..+.++... +|..+ --.|=.|.+.++|+.|+..|-..
T Consensus 243 ~~~YTLQL~Aa---s~~~~L~~f~~~~~-L~~~~VYqT~RnGkpWYVVvyG~Y~Sr~eAk~Ai~sLPa~ 307 (327)
T PRK11901 243 ASHYTLQLSSA---SRSDTLNAYAKKQN-LSHYHVYETKRDGKPWYVLVSGNYASSAEAKRAIATLPAE 307 (327)
T ss_pred CCCeEEEeecC---CCHHHHHHHHHHcC-cCceEEEEEEECCceEEEEEecCcCCHHHHHHHHHhCCHH
Confidence 44556666653 45888888888876 3445666554 44332 11233589999999999987543
No 255
>KOG4008|consensus
Probab=28.28 E-value=58 Score=26.71 Aligned_cols=36 Identities=14% Similarity=0.337 Sum_probs=30.4
Q ss_pred CccceEEEecCCCCCCHHHHHHHhhccCCeeEEEee
Q psy8956 226 ARKNKIFVANLPSNINNSEFEELFARFGTITSSSLV 261 (333)
Q Consensus 226 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~ 261 (333)
....+||+-|+|...+++.|..+.++.|.+..+.+.
T Consensus 38 ~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~y~ 73 (261)
T KOG4008|consen 38 NEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELLYN 73 (261)
T ss_pred ccccceeeecccccccHHHHHHHHHHhhhhhheecc
Confidence 345789999999999999999999999987665554
No 256
>PF12829 Mhr1: Transcriptional regulation of mitochondrial recombination; InterPro: IPR024629 These proteins are involved in regulation of RNA polymerase II-dependent transcription. They are also involved in regulation of mitochondrial DNA recombination, maintenance, repair, and generation of homoplasmic cells [, , , ].
Probab=27.97 E-value=1.8e+02 Score=20.01 Aligned_cols=52 Identities=15% Similarity=0.272 Sum_probs=36.0
Q ss_pred CCCCCCHHHHHHHHhcCC-CeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhc
Q psy8956 42 LEPSVDNQALINEFKKFG-TLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96 (333)
Q Consensus 42 Lp~~~t~~~l~~~f~~~g-~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~ 96 (333)
+-+..+...+..-|..-| .-.-..+.+|-. +.+|.|.|.+.+.+..|.+.|-
T Consensus 20 ~~p~l~~~~i~~Q~~~~gkk~~pp~lRkD~W---~pm~vv~f~~~~~g~~~yq~Lr 72 (91)
T PF12829_consen 20 QTPNLDNNQILKQFPFPGKKNKPPSLRKDYW---RPMCVVNFPNYEVGVSAYQKLR 72 (91)
T ss_pred cCcccChhHHHHhccCCCcccCCchhccccc---eEeEEEECCChHHHHHHHHHHH
Confidence 456777777777776666 222233444443 5679999999999999988763
No 257
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=27.95 E-value=1.4e+02 Score=17.73 Aligned_cols=44 Identities=16% Similarity=0.360 Sum_probs=32.8
Q ss_pred CHHHHHHHHhcCC-CeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHH
Q psy8956 47 DNQALINEFKKFG-TLRDVRVARNKNDESRGFAIIVFNTPAEAKKAR 92 (333)
Q Consensus 47 t~~~l~~~f~~~g-~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al 92 (333)
.-..+.+.|.+.| .|.++.+.... ...+...+.+.+.+.|.+++
T Consensus 11 ~l~~i~~~l~~~~inI~~~~~~~~~--~~~~~~~~~v~~~~~a~~~l 55 (56)
T cd04889 11 RLAEVTEILAEAGINIKAISIAETR--GEFGILRLIFSDPERAKEVL 55 (56)
T ss_pred hHHHHHHHHHHcCCCEeeEEEEEcc--CCcEEEEEEECCHHHHHHHh
Confidence 3455778888888 88777766543 35778888899998888776
No 258
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=27.93 E-value=1.8e+02 Score=19.98 Aligned_cols=50 Identities=12% Similarity=0.259 Sum_probs=34.5
Q ss_pred EEEeCCCCCCCHHHHHHHHhc-CC-CeeEEEEeeCC-----CCC------cccEEEEEeCCHH
Q psy8956 37 LHVNNLEPSVDNQALINEFKK-FG-TLRDVRVARNK-----NDE------SRGFAIIVFNTPA 86 (333)
Q Consensus 37 l~V~nLp~~~t~~~l~~~f~~-~g-~v~~v~i~~~~-----~~~------~~g~a~v~f~~~e 86 (333)
-+.-.++.++|..+|+++++. || .|.+|+...-. .|. ...-|+|++...+
T Consensus 22 ~~tF~V~~~atK~~Ik~aie~iy~V~V~~Vnt~~~~gk~kR~g~~~g~~~~~KKaiVtL~~~~ 84 (91)
T PF00276_consen 22 QYTFEVDPRATKTEIKEAIEKIYGVKVKKVNTMNYPGKKKRKGKFVGKTKDYKKAIVTLKEGD 84 (91)
T ss_dssp EEEEEETTTSTHHHHHHHHHHHHTSEEEEEEEEEETSEEEESSSCEEEE-EEEEEEEEESTTS
T ss_pred EEEEEEeCCCCHHHHHHHHHhhcCCCeeEEEEeEeCCCceEeCCccccCCCcEEEEEEeCCCC
Confidence 455558899999999999988 78 77777655443 222 2235888887653
No 259
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=27.75 E-value=2.1e+02 Score=19.71 Aligned_cols=33 Identities=18% Similarity=0.298 Sum_probs=25.8
Q ss_pred EEEeCCCCCCCHHHHHHHHhc-CC-CeeEEEEeeC
Q psy8956 37 LHVNNLEPSVDNQALINEFKK-FG-TLRDVRVARN 69 (333)
Q Consensus 37 l~V~nLp~~~t~~~l~~~f~~-~g-~v~~v~i~~~ 69 (333)
.++-.++..+|..+|+++++. || .|.+|+...-
T Consensus 22 ~~~F~V~~~a~K~eIK~aie~lf~VkV~~VnT~~~ 56 (92)
T PRK05738 22 KYVFEVAPDATKPEIKAAVEKLFGVKVESVNTLNV 56 (92)
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCCceeEEEEEEe
Confidence 445557899999999999988 77 7777766544
No 260
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=27.31 E-value=2.6e+02 Score=20.66 Aligned_cols=71 Identities=13% Similarity=0.203 Sum_probs=48.9
Q ss_pred ccceEEEeCCCCC---CCHHHHHHHHhcCC-CeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEe
Q psy8956 33 KENELHVNNLEPS---VDNQALINEFKKFG-TLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIIT 108 (333)
Q Consensus 33 ~~~~l~V~nLp~~---~t~~~l~~~f~~~g-~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~ 108 (333)
+...|.|+..... .+...+.+.++.-| .+.++..- .+...|.|.+.++-.+|.+.|....=.+-.+...
T Consensus 34 edpavQIs~~~~g~~~~~~~~v~~~L~~~gI~~ksi~~~-------~~~~~irf~~~~~Ql~Ak~vL~~~L~~~y~VAln 106 (127)
T PRK10629 34 QESTLAIRAVHQGASLPDGFYVYQHLDANGIHIKSITPE-------NDSLLIRFDSPEQSAAAKEVLDRTLPHGYIIAQQ 106 (127)
T ss_pred CCceEEEecCCCCCccchHHHHHHHHHHCCCCcceEEee-------CCEEEEEECCHHHHHHHHHHHHHHcCCCCEEEEe
Confidence 3456778776444 57778899999988 66655433 2359999999999999988876665444444444
Q ss_pred ee
Q psy8956 109 FV 110 (333)
Q Consensus 109 ~~ 110 (333)
.+
T Consensus 107 l~ 108 (127)
T PRK10629 107 DD 108 (127)
T ss_pred cC
Confidence 43
No 261
>PHA01632 hypothetical protein
Probab=27.30 E-value=64 Score=19.61 Aligned_cols=21 Identities=10% Similarity=0.203 Sum_probs=17.1
Q ss_pred EEEeCCCCCCCHHHHHHHHhc
Q psy8956 37 LHVNNLEPSVDNQALINEFKK 57 (333)
Q Consensus 37 l~V~nLp~~~t~~~l~~~f~~ 57 (333)
|.|..+|..-|+++|++.+.+
T Consensus 19 ilieqvp~kpteeelrkvlpk 39 (64)
T PHA01632 19 ILIEQVPQKPTEEELRKVLPK 39 (64)
T ss_pred EehhhcCCCCCHHHHHHHHHH
Confidence 456789999999999988644
No 262
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=27.15 E-value=1.8e+02 Score=18.67 Aligned_cols=51 Identities=14% Similarity=0.143 Sum_probs=33.4
Q ss_pred CHHHHHHHHhcCC-CeeEEEEeeCCCCCcccEEEEEeCC---HHHHHHHHHHhcC
Q psy8956 47 DNQALINEFKKFG-TLRDVRVARNKNDESRGFAIIVFNT---PAEAKKARVEMNG 97 (333)
Q Consensus 47 t~~~l~~~f~~~g-~v~~v~i~~~~~~~~~g~a~v~f~~---~e~A~~al~~l~~ 97 (333)
.-.++.+.|..+| .+..+.-.+.......-..||++.. ....+.+++.|..
T Consensus 12 ~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~~~~~~~~~~~~~l~~l~~ 66 (75)
T cd04880 12 ALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFEGHIDDPDVKEALEELKR 66 (75)
T ss_pred HHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEECCCCCHHHHHHHHHHHH
Confidence 4667888899998 7777644444333344567888874 5666677776644
No 263
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=26.00 E-value=2e+02 Score=21.97 Aligned_cols=46 Identities=4% Similarity=0.098 Sum_probs=30.6
Q ss_pred HHHHHHHHhc----CC-CeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcC
Q psy8956 48 NQALINEFKK----FG-TLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNG 97 (333)
Q Consensus 48 ~~~l~~~f~~----~g-~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~ 97 (333)
|+.+.+.+.. .| .|.++.+... -.||.||+....+++..++..+.+
T Consensus 18 E~~V~~~L~~~~~~~~~~i~~i~vp~~----fpGYVfVe~~~~~~~~~~i~~v~~ 68 (153)
T PRK08559 18 ERNVALMLAMRAKKENLPIYAILAPPE----LKGYVLVEAESKGAVEEAIRGIPH 68 (153)
T ss_pred HHHHHHHHHHHHHhCCCcEEEEEccCC----CCcEEEEEEEChHHHHHHHhcCCC
Confidence 4445444333 33 3666655554 589999999988999998866544
No 264
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=25.55 E-value=1.9e+02 Score=18.62 Aligned_cols=51 Identities=10% Similarity=0.159 Sum_probs=29.9
Q ss_pred CHHHHHHHHhcCC-CeeEEEEeeCCCCCcccEEEEEeC-CHHHHHHHHHHhcC
Q psy8956 47 DNQALINEFKKFG-TLRDVRVARNKNDESRGFAIIVFN-TPAEAKKARVEMNG 97 (333)
Q Consensus 47 t~~~l~~~f~~~g-~v~~v~i~~~~~~~~~g~a~v~f~-~~e~A~~al~~l~~ 97 (333)
.-.++.+.|..+| .+..+.-.+.+.....-.-||++. ..++.++|++.|..
T Consensus 13 ~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~~~~~~~~~~l~~L~~ 65 (74)
T cd04904 13 ALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCEVDRGDLDQLISSLRR 65 (74)
T ss_pred HHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEEcChHHHHHHHHHHHH
Confidence 4556777788888 555443333332222334667776 55566777777654
No 265
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=25.36 E-value=1.7e+02 Score=26.28 Aligned_cols=80 Identities=19% Similarity=0.271 Sum_probs=56.4
Q ss_pred ccccceEEEeCCCCC-CCHHHHHHHHhc---CC-CeeEEEEeeCCCCC--------------------------------
Q psy8956 31 VYKENELHVNNLEPS-VDNQALINEFKK---FG-TLRDVRVARNKNDE-------------------------------- 73 (333)
Q Consensus 31 ~~~~~~l~V~nLp~~-~t~~~l~~~f~~---~g-~v~~v~i~~~~~~~-------------------------------- 73 (333)
..+..+|-|-|+.|. +...+|...|+. || .+..|.|++...|.
T Consensus 143 G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypsefGkeRm~~e~vqGpprdif~~~d~~~ssqk~~~dn 222 (622)
T COG5638 143 GNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSEFGKERMAAEHVQGPPRDIFTPADNQPSSQKFGDDN 222 (622)
T ss_pred CCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhhhhHHHHhHhhccCCchhhccccccCcchhccCCcc
Confidence 456778999999986 678888888766 44 77778777544221
Q ss_pred ---------------c-------------------ccEEEEEeCCHHHHHHHHHHhcCCccCC--eeeEEeee
Q psy8956 74 ---------------S-------------------RGFAIIVFNTPAEAKKARVEMNGHLIGS--KPVIITFV 110 (333)
Q Consensus 74 ---------------~-------------------~g~a~v~f~~~e~A~~al~~l~~~~~~g--~~i~v~~~ 110 (333)
. .-||.|++.+.+.++.....++|..+.. ..+.++|.
T Consensus 223 ~~sd~d~g~d~~~Egd~g~e~d~~~lrqyqlerlryYyAvvec~d~~tsK~iY~~CDG~Eye~san~~DLRfv 295 (622)
T COG5638 223 VFSDRDAGEDALIEGDRGNEFDMVKLRQYQLERLRYYYAVVECEDIETSKNIYSACDGVEYENSANVLDLRFV 295 (622)
T ss_pred chhhhhcchhhhhhcccccchhHHHHHHHHhhhheeEEEEEEeccchhhHHHHhccCccccccccceeeeeec
Confidence 1 2368888888888888888888887644 44455554
No 266
>KOG1295|consensus
Probab=24.50 E-value=1.1e+02 Score=27.20 Aligned_cols=61 Identities=18% Similarity=0.350 Sum_probs=45.1
Q ss_pred ceEEEecCCCCCCHHHHHHHhhccCC-eeEEEeecC--------CcEEEEEECCHHHHHHHHHHhCCCee
Q psy8956 229 NKIFVANLPSNINNSEFEELFARFGT-ITSSSLVSD--------KHIGFIEFIMPKHATHAVSTMNGHVF 289 (333)
Q Consensus 229 ~~l~v~nl~~~~~~~~l~~~f~~~g~-v~~v~i~~~--------~~~~fV~f~~~~~A~~a~~~l~g~~l 289 (333)
..+.|.+||...+.+++.+-...+-. |.+..+... .+.+||.|.+.++...-...++|+.|
T Consensus 8 ~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 8 VKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred eeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 45778899999999888776666443 333333311 45789999999999888888999876
No 267
>PTZ00071 40S ribosomal protein S24; Provisional
Probab=24.25 E-value=2.3e+02 Score=21.06 Aligned_cols=46 Identities=22% Similarity=0.404 Sum_probs=28.2
Q ss_pred CCCHHHHHHHHhc-CC-CeeEEEEe---eCC--CCCcccEEEEEeCCHHHHHHH
Q psy8956 45 SVDNQALINEFKK-FG-TLRDVRVA---RNK--NDESRGFAIIVFNTPAEAKKA 91 (333)
Q Consensus 45 ~~t~~~l~~~f~~-~g-~v~~v~i~---~~~--~~~~~g~a~v~f~~~e~A~~a 91 (333)
..+..+|++.+.. |+ .-.+..++ ... .|.+.|||.| |.+.+.|...
T Consensus 35 TpSr~eirekLA~~~~v~d~~~Vvv~~~~T~fG~g~StG~a~I-Yds~e~~kk~ 87 (132)
T PTZ00071 35 TVSKKDIKEKLAKQYKVADARTIVLFGFKTKFGGGKTTGFGLI-YDNLAALKKF 87 (132)
T ss_pred CCCHHHHHHHHHHHhCCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 5577888877654 55 12222222 222 4568888888 8888888644
No 268
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=23.69 E-value=2.3e+02 Score=18.76 Aligned_cols=61 Identities=11% Similarity=0.144 Sum_probs=43.3
Q ss_pred eEEEeCCCCCCCHHHHHHHHhcCC-CeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCC
Q psy8956 36 ELHVNNLEPSVDNQALINEFKKFG-TLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98 (333)
Q Consensus 36 ~l~V~nLp~~~t~~~l~~~f~~~g-~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~ 98 (333)
.+++.|-|--. +.+..+|...| .|.++.+-......-..+-++...+.+......++|+..
T Consensus 6 si~v~n~pGVL--~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~~~~~~i~qi~kQL~KL 67 (76)
T PRK06737 6 SLVIHNDPSVL--LRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVCTENEATLLVSQLKKL 67 (76)
T ss_pred EEEEecCCCHH--HHHHHHHhccCcceEEEEecccCCCCeeEEEEEEECCHHHHHHHHHHHhCC
Confidence 46777755543 34888999999 888887775553333445666678999999998888654
No 269
>KOG4008|consensus
Probab=23.17 E-value=74 Score=26.15 Aligned_cols=31 Identities=13% Similarity=0.183 Sum_probs=26.9
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhcCCCee
Q psy8956 32 YKENELHVNNLEPSVDNQALINEFKKFGTLR 62 (333)
Q Consensus 32 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~ 62 (333)
.+...+|+-|+|..+|++-|.++..++|-+.
T Consensus 38 ~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq 68 (261)
T KOG4008|consen 38 NEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQ 68 (261)
T ss_pred ccccceeeecccccccHHHHHHHHHHhhhhh
Confidence 4556799999999999999999999999554
No 270
>KOG2891|consensus
Probab=22.81 E-value=1.2e+02 Score=25.54 Aligned_cols=40 Identities=23% Similarity=0.350 Sum_probs=30.5
Q ss_pred cccCCCCeEEEeCCCCCC------------CHHHHHHHhhccCceEEEEEEe
Q psy8956 125 EKQYKKDKVFVKNLVETV------------DEEELKSHFIKFGNIIEVKIVR 164 (333)
Q Consensus 125 ~~~~~~~~l~v~~l~~~~------------~~~~l~~~f~~~g~v~~~~~~~ 164 (333)
.+.....++++.+||..| ++..|+..|+.||.|..+.++-
T Consensus 144 kpgerpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipi 195 (445)
T KOG2891|consen 144 KPGERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPI 195 (445)
T ss_pred CCCCCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcc
Confidence 344556688998888643 5677999999999998887653
No 271
>PF14893 PNMA: PNMA
Probab=21.72 E-value=1.7e+02 Score=25.76 Aligned_cols=48 Identities=17% Similarity=0.360 Sum_probs=30.4
Q ss_pred ccceEEEecCCCCCCHHHHHHHhh----ccCCeeEE--EeecC--CcEEEEEECCH
Q psy8956 227 RKNKIFVANLPSNINNSEFEELFA----RFGTITSS--SLVSD--KHIGFIEFIMP 274 (333)
Q Consensus 227 ~~~~l~v~nl~~~~~~~~l~~~f~----~~g~v~~v--~i~~~--~~~~fV~f~~~ 274 (333)
..+.|.|.+||.++++++|.+.+. ..|...-+ .+.+. ...++|+|...
T Consensus 17 ~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~~~aalve~~e~ 72 (331)
T PF14893_consen 17 PQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREENAKAALVEFAED 72 (331)
T ss_pred hhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcccceeeeecccc
Confidence 346799999999999999888775 34543211 11111 34567777644
No 272
>KOG2295|consensus
Probab=21.63 E-value=19 Score=33.26 Aligned_cols=68 Identities=21% Similarity=0.250 Sum_probs=52.0
Q ss_pred ccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC------CcEEEEEECCHHHHHHHHHHhCCCeeCCeeE
Q psy8956 227 RKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294 (333)
Q Consensus 227 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~------~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l 294 (333)
..+.+++.|++++++-.+|..+++.+-.+..+-+... ...+.|.|+.--+...|.-+||+..+....+
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~~ 303 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNFL 303 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccccccc
Confidence 3578999999999999999999999888777665544 4467889986666666677777776654433
No 273
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=21.61 E-value=2.4e+02 Score=18.32 Aligned_cols=42 Identities=12% Similarity=0.100 Sum_probs=31.9
Q ss_pred HHHHHHhhccCCeeEEEeecC--CcEEEEEECCHHHHHHHHHHhC
Q psy8956 243 SEFEELFARFGTITSSSLVSD--KHIGFIEFIMPKHATHAVSTMN 285 (333)
Q Consensus 243 ~~l~~~f~~~g~v~~v~i~~~--~~~~fV~f~~~~~A~~a~~~l~ 285 (333)
.++.+.+..+| +....+.-. -+++|+-+.+.+.+.++.+.+.
T Consensus 37 ~~~~~~~~~~G-a~~~~~sGsG~G~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKMSGSGGGPTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHHHHTT-ESEEEEETTSSSSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceecCCCCCCCeEEEEECCHHHHHHHHHHHH
Confidence 56777788888 556666655 5678888889999888888764
No 274
>PF10915 DUF2709: Protein of unknown function (DUF2709); InterPro: IPR024484 Members of this family appear restricted to Chlamydiales. Their function is unknown.
Probab=21.20 E-value=1.7e+02 Score=23.18 Aligned_cols=30 Identities=23% Similarity=0.324 Sum_probs=26.1
Q ss_pred EEeCCHHHHHHHHHHhcCCccCCeeeEEeee
Q psy8956 80 IVFNTPAEAKKARVEMNGHLIGSKPVIITFV 110 (333)
Q Consensus 80 v~f~~~e~A~~al~~l~~~~~~g~~i~v~~~ 110 (333)
+.|.+.++|.+.++. .|+.|....|.+.+.
T Consensus 47 ~I~qs~e~ai~~lE~-e~KlWreteI~I~~g 76 (238)
T PF10915_consen 47 IIFQSAEDAIRILEE-EGKLWRETEIKIQSG 76 (238)
T ss_pred hhccCHHHHHHHHHH-hcchheeeeEEEecC
Confidence 359999999999976 899999999998865
No 275
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.94 E-value=2.1e+02 Score=17.31 Aligned_cols=47 Identities=11% Similarity=0.106 Sum_probs=30.5
Q ss_pred CHHHHHHHHhcCC-CeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHH
Q psy8956 47 DNQALINEFKKFG-TLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVE 94 (333)
Q Consensus 47 t~~~l~~~f~~~g-~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~ 94 (333)
.-.++-+.|..+| .|.++....... .......+...+.+.+.++++.
T Consensus 12 ~L~~i~~~l~~~~~nI~~i~~~~~~~-~~~~~v~~~ve~~~~~~~~L~~ 59 (65)
T cd04882 12 GLHEILQILSEEGINIEYMYAFVEKK-GGKALLIFRTEDIEKAIEVLQE 59 (65)
T ss_pred HHHHHHHHHHHCCCChhheEEEccCC-CCeEEEEEEeCCHHHHHHHHHH
Confidence 3455778888888 777665544321 2345567777788877777765
No 276
>KOG4365|consensus
Probab=20.87 E-value=17 Score=32.54 Aligned_cols=71 Identities=7% Similarity=-0.062 Sum_probs=55.3
Q ss_pred eEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC------CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEecCC
Q psy8956 230 KIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGT 301 (333)
Q Consensus 230 ~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~------~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~a~~ 301 (333)
..++..+|...+++++.-+|+-||.|..+...+. .-.+|+.-.+ ++|..+++.+.-..+.|..+++.+++.
T Consensus 5 ~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~~ 81 (572)
T KOG4365|consen 5 KKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSPS 81 (572)
T ss_pred hhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCch
Confidence 4567788889999999999999999987765443 3356776655 577788888888888899999988865
No 277
>KOG1635|consensus
Probab=20.36 E-value=4.3e+02 Score=20.74 Aligned_cols=89 Identities=15% Similarity=0.127 Sum_probs=55.1
Q ss_pred eeeccCCCCCCCCccccCcCCcCcccccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCC--CCCcccEEEEEeCC
Q psy8956 7 ILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK--NDESRGFAIIVFNT 84 (333)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~--~~~~~g~a~v~f~~ 84 (333)
.+++..+-+..++|+++.--+.+ ....-.|.|.-=|..++-++|.++|..--.-.. ..+-. -|.....| |-|.+
T Consensus 49 ~T~vGYagG~~~nPtYk~vc~~t-T~HaEvvrV~ydpk~~sy~~Lld~Fw~~HdPtt--~n~QG~D~GtQYRS~-I~~~s 124 (191)
T KOG1635|consen 49 RTEVGYAGGITDNPTYKDVCSGT-TNHAEVVRVQYDPKVISYEELLDFFWSRHDPTT--LNRQGNDVGTQYRSG-IYTYS 124 (191)
T ss_pred EEeecccCCccCCcchhhhccCC-CCcceEEEEEeCcccccHHHHHHHHHHcCCchh--hhccCCcccceeeee-eeeCC
Confidence 45677788888888876543332 234456778877899999999999877432221 11100 12223334 45778
Q ss_pred HHHHHHHHHHhcCCc
Q psy8956 85 PAEAKKARVEMNGHL 99 (333)
Q Consensus 85 ~e~A~~al~~l~~~~ 99 (333)
.+..+.|.+.+....
T Consensus 125 ~eq~k~A~~s~e~~Q 139 (191)
T KOG1635|consen 125 PEQEKLARESKEREQ 139 (191)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888877765543
No 278
>PRK09631 DNA topoisomerase IV subunit A; Provisional
Probab=20.32 E-value=7.5e+02 Score=24.20 Aligned_cols=59 Identities=10% Similarity=0.152 Sum_probs=38.3
Q ss_pred ceEEEeCCCCCCCHHHHHHHHh---cCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHh
Q psy8956 35 NELHVNNLEPSVDNQALINEFK---KFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEM 95 (333)
Q Consensus 35 ~~l~V~nLp~~~t~~~l~~~f~---~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l 95 (333)
.+|.|+.||..++.+.|.+.+. .-|.+. +.=++|.+... -.--|++.....+...++.|
T Consensus 221 ~~ivItEiP~~~~~~~li~~i~~~~~~~ki~-I~~i~D~s~~~-v~i~i~l~~~~~~~~~~~~L 282 (635)
T PRK09631 221 KTIVIREIPFGTTTESLIASIEKAARKGKIK-ISSINDYTAEN-VEIEIKLPRGVYASEVIEAL 282 (635)
T ss_pred CEEEEEeCCCcccHHHHHHHHHHHHHcCCCc-cceeEeCCCCc-EEEEEEECCCCCHHHHHHHH
Confidence 5799999999998888887643 345544 44455654432 23345666666777666655
Done!