Query psy8956
Match_columns 333
No_of_seqs 149 out of 1874
Neff 10.6
Searched_HMMs 29240
Date Fri Aug 16 23:53:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8956.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8956hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ghp_A U4/U6 snRNA-associated 100.0 8.3E-46 2.8E-50 317.7 28.5 251 26-303 33-292 (292)
2 3smz_A Protein raver-1, ribonu 100.0 9.1E-45 3.1E-49 310.0 32.9 241 32-305 20-267 (284)
3 3md3_A Nuclear and cytoplasmic 100.0 4.1E-32 1.4E-36 213.0 22.5 164 35-207 1-165 (166)
4 4f02_A Polyadenylate-binding p 100.0 2E-32 6.8E-37 223.2 21.1 169 31-209 12-181 (213)
5 1b7f_A Protein (SXL-lethal pro 100.0 5.5E-32 1.9E-36 212.7 21.9 163 33-206 2-168 (168)
6 1fxl_A Paraneoplastic encephal 100.0 1.3E-31 4.5E-36 210.3 23.4 161 34-205 2-166 (167)
7 4f02_A Polyadenylate-binding p 100.0 1E-32 3.4E-37 225.0 16.0 167 127-304 12-183 (213)
8 2qfj_A FBP-interacting repress 100.0 7.2E-32 2.5E-36 220.9 17.5 182 30-211 24-207 (216)
9 1l3k_A Heterogeneous nuclear r 100.0 6E-31 2.1E-35 212.1 22.5 175 30-211 9-185 (196)
10 3md3_A Nuclear and cytoplasmic 100.0 7.7E-31 2.6E-35 205.7 21.2 160 131-301 1-166 (166)
11 3nmr_A Cugbp ELAV-like family 100.0 1.3E-30 4.3E-35 206.3 21.7 164 33-206 2-174 (175)
12 2adc_A Polypyrimidine tract-bi 100.0 3.4E-30 1.2E-34 212.4 22.7 194 31-302 31-228 (229)
13 3smz_A Protein raver-1, ribonu 100.0 6E-30 2.1E-34 218.2 23.4 184 2-211 81-266 (284)
14 2cjk_A Nuclear polyadenylated 100.0 3.8E-31 1.3E-35 207.7 14.1 163 33-209 2-166 (167)
15 1fxl_A Paraneoplastic encephal 100.0 1.4E-29 4.7E-34 198.7 22.2 157 130-299 2-167 (167)
16 1b7f_A Protein (SXL-lethal pro 100.0 1.1E-29 3.7E-34 199.6 21.1 158 129-299 2-168 (168)
17 2qfj_A FBP-interacting repress 100.0 1.3E-29 4.5E-34 207.4 21.3 176 129-306 27-209 (216)
18 1qm9_A Polypyrimidine tract-bi 100.0 6.6E-30 2.2E-34 206.3 19.2 191 34-302 3-197 (198)
19 1l3k_A Heterogeneous nuclear r 100.0 1.4E-29 4.7E-34 204.1 20.9 172 126-306 9-187 (196)
20 2g4b_A Splicing factor U2AF 65 100.0 1.7E-29 5.7E-34 199.3 20.3 158 32-206 2-171 (172)
21 2ghp_A U4/U6 snRNA-associated 100.0 5.6E-30 1.9E-34 219.3 18.4 184 2-209 104-291 (292)
22 3tyt_A Heterogeneous nuclear r 100.0 2E-29 6.9E-34 203.1 19.9 169 33-206 3-204 (205)
23 3nmr_A Cugbp ELAV-like family 100.0 5.6E-29 1.9E-33 196.8 20.7 160 129-300 2-175 (175)
24 1fje_B Nucleolin RBD12, protei 100.0 3.4E-30 1.2E-34 203.8 12.7 166 30-209 9-174 (175)
25 3pgw_A U1-A; protein-RNA compl 100.0 2.5E-28 8.6E-33 207.9 23.0 173 127-301 6-282 (282)
26 2yh0_A Splicing factor U2AF 65 100.0 1.6E-28 5.6E-33 198.1 20.8 172 33-210 3-195 (198)
27 3tyt_A Heterogeneous nuclear r 100.0 1.5E-28 5.2E-33 198.0 20.2 167 129-299 3-204 (205)
28 2cjk_A Nuclear polyadenylated 100.0 1.7E-29 5.8E-34 198.2 13.9 159 129-303 2-167 (167)
29 3pgw_A U1-A; protein-RNA compl 100.0 2.7E-28 9.3E-33 207.7 22.0 170 32-207 7-281 (282)
30 3sde_A Paraspeckle component 1 100.0 3.3E-28 1.1E-32 204.4 21.6 160 29-210 17-180 (261)
31 1fje_B Nucleolin RBD12, protei 100.0 4.2E-29 1.4E-33 197.5 14.0 166 125-303 8-175 (175)
32 2yh0_A Splicing factor U2AF 65 100.0 7.2E-28 2.5E-32 194.3 20.5 170 129-304 3-196 (198)
33 2g4b_A Splicing factor U2AF 65 100.0 3.6E-28 1.2E-32 191.6 18.1 153 129-300 3-172 (172)
34 3sde_A Paraspeckle component 1 99.9 2.2E-26 7.4E-31 193.3 19.4 155 127-305 19-182 (261)
35 4f25_A Polyadenylate-binding p 99.9 1.7E-22 5.9E-27 147.4 10.7 109 34-146 5-113 (115)
36 2kn4_A Immunoglobulin G-bindin 99.9 7.5E-22 2.6E-26 152.9 14.9 138 169-306 11-154 (158)
37 2i2y_A Fusion protein consists 99.9 4.1E-21 1.4E-25 147.2 12.9 134 169-303 11-149 (150)
38 4fxv_A ELAV-like protein 1; RN 99.9 6.7E-21 2.3E-25 134.7 11.7 81 31-111 16-97 (99)
39 2kn4_A Immunoglobulin G-bindin 99.8 3.8E-20 1.3E-24 143.2 15.6 148 63-211 2-152 (158)
40 2lxi_A RNA-binding protein 10; 99.8 1.4E-20 4.9E-25 130.9 6.3 81 34-114 1-84 (91)
41 3s8s_A Histone-lysine N-methyl 99.8 2.2E-19 7.5E-24 129.3 11.7 79 32-110 4-83 (110)
42 3r27_A HnRNP L, heterogeneous 99.8 2.2E-19 7.6E-24 125.0 11.1 80 224-303 17-98 (100)
43 1sjq_A Polypyrimidine tract-bi 99.8 1.5E-19 5.3E-24 127.2 10.2 85 225-309 13-99 (105)
44 3bs9_A Nucleolysin TIA-1 isofo 99.8 3.2E-19 1.1E-23 123.4 11.3 81 32-112 4-85 (87)
45 4f25_A Polyadenylate-binding p 99.8 2.8E-19 9.4E-24 130.3 10.8 102 227-328 4-110 (115)
46 2jrs_A RNA-binding protein 39; 99.8 6.5E-19 2.2E-23 126.7 12.5 84 28-111 20-104 (108)
47 4fxv_A ELAV-like protein 1; RN 99.8 3.3E-19 1.1E-23 125.9 10.7 76 226-301 17-98 (99)
48 1wex_A Hypothetical protein (r 99.8 9.7E-19 3.3E-23 124.2 13.1 83 224-306 11-95 (104)
49 2lkz_A RNA-binding protein 5; 99.8 1.3E-19 4.4E-24 126.5 8.3 81 31-111 6-93 (95)
50 2do4_A Squamous cell carcinoma 99.8 8.9E-19 3E-23 124.5 12.7 82 31-112 14-95 (100)
51 3md1_A Nuclear and cytoplasmic 99.8 8.9E-19 3E-23 120.0 11.7 78 35-112 2-80 (83)
52 2dgo_A Cytotoxic granule-assoc 99.8 2.4E-18 8.2E-23 125.6 14.6 85 31-115 12-97 (115)
53 2dnz_A Probable RNA-binding pr 99.8 1.4E-18 4.6E-23 122.4 12.9 84 32-115 3-87 (95)
54 2i2y_A Fusion protein consists 99.8 3.6E-19 1.2E-23 136.3 10.6 132 73-209 11-148 (150)
55 2d9p_A Polyadenylate-binding p 99.8 1.5E-18 5E-23 124.1 12.9 83 31-114 12-94 (103)
56 2cq1_A PTB-like protein L; RRM 99.8 2.8E-18 9.7E-23 121.0 13.8 84 223-306 10-95 (101)
57 1whw_A Hypothetical protein ri 99.8 1.3E-18 4.3E-23 123.5 12.1 84 32-115 6-90 (99)
58 2dgs_A DAZ-associated protein 99.8 1.9E-18 6.6E-23 122.5 13.0 82 32-114 8-90 (99)
59 2dnh_A Bruno-like 5, RNA bindi 99.8 2.2E-18 7.5E-23 123.6 13.4 83 32-114 13-98 (105)
60 3p5t_L Cleavage and polyadenyl 99.8 2E-19 7E-24 125.1 7.6 79 35-113 2-83 (90)
61 2x1f_A MRNA 3'-END-processing 99.8 9.2E-19 3.2E-23 123.4 11.0 81 33-113 1-82 (96)
62 1x5s_A Cold-inducible RNA-bind 99.8 1.5E-18 5E-23 123.9 12.2 86 31-116 9-95 (102)
63 2fy1_A RNA-binding motif prote 99.8 1.5E-18 5.1E-23 126.5 12.3 85 32-116 5-89 (116)
64 1x4d_A Matrin 3; structural ge 99.8 9.1E-19 3.1E-23 123.3 10.7 79 225-303 12-93 (102)
65 1p27_B RNA-binding protein 8A; 99.8 1.6E-18 5.5E-23 124.6 12.2 83 31-113 20-103 (106)
66 2ad9_A Polypyrimidine tract-bi 99.8 1.7E-18 5.9E-23 125.0 12.3 85 224-308 27-113 (119)
67 3r27_A HnRNP L, heterogeneous 99.8 1.1E-18 3.8E-23 121.5 10.8 79 28-111 15-95 (100)
68 3mdf_A Peptidyl-prolyl CIS-tra 99.8 7.3E-19 2.5E-23 121.0 9.9 79 32-110 5-84 (85)
69 2hvz_A Splicing factor, argini 99.8 6E-19 2E-23 125.6 9.6 100 35-139 1-100 (101)
70 2cqc_A Arginine/serine-rich sp 99.8 1.7E-18 5.9E-23 121.8 11.8 81 30-110 11-92 (95)
71 2cpz_A CUG triplet repeat RNA- 99.8 2.3E-18 7.9E-23 125.6 12.8 86 29-114 20-106 (115)
72 2cq3_A RNA-binding protein 9; 99.8 4.4E-18 1.5E-22 121.6 14.0 84 31-115 12-95 (103)
73 2cq0_A Eukaryotic translation 99.8 1.9E-18 6.5E-23 123.5 12.1 83 31-113 12-95 (103)
74 2dnm_A SRP46 splicing factor; 99.8 1.4E-18 4.9E-23 124.1 11.2 83 31-113 10-93 (103)
75 2cqb_A Peptidyl-prolyl CIS-tra 99.8 1.1E-18 3.8E-23 124.5 10.6 83 32-114 10-93 (102)
76 2ywk_A Putative RNA-binding pr 99.8 1.6E-18 5.6E-23 121.9 11.0 80 31-110 13-92 (95)
77 2wbr_A GW182, gawky, LD47780P; 99.8 1.7E-18 5.6E-23 116.0 10.3 74 227-300 6-79 (89)
78 3lqv_A PRE-mRNA branch site pr 99.8 5.3E-19 1.8E-23 129.1 8.6 105 31-156 5-109 (115)
79 2cph_A RNA binding motif prote 99.8 3.7E-18 1.3E-22 122.9 12.9 84 31-114 12-98 (107)
80 1x5u_A Splicing factor 3B subu 99.8 3E-18 1E-22 122.9 12.3 83 32-114 13-96 (105)
81 2e5h_A Zinc finger CCHC-type a 99.8 2E-18 7E-23 121.2 11.2 79 32-110 14-93 (94)
82 1x5t_A Splicing factor 3B subu 99.8 1.3E-18 4.3E-23 122.8 10.1 83 32-114 3-87 (96)
83 1s79_A Lupus LA protein; RRM, 99.8 1.3E-18 4.5E-23 123.5 9.9 78 32-110 9-86 (103)
84 1sjq_A Polypyrimidine tract-bi 99.8 2E-18 6.8E-23 121.5 10.1 81 30-115 12-94 (105)
85 2la6_A RNA-binding protein FUS 99.8 3.7E-18 1.3E-22 121.0 11.6 81 30-110 9-98 (99)
86 2wbr_A GW182, gawky, LD47780P; 99.8 1.6E-18 5.4E-23 116.1 8.9 72 34-110 7-78 (89)
87 2kxn_B Transformer-2 protein h 99.8 2.3E-18 7.9E-23 127.7 10.8 86 26-111 38-124 (129)
88 2dgp_A Bruno-like 4, RNA bindi 99.8 4E-18 1.4E-22 122.5 11.6 84 31-114 10-97 (106)
89 1oo0_B CG8781-PA, drosophila Y 99.8 3.8E-18 1.3E-22 123.4 11.6 83 31-113 23-106 (110)
90 2cpj_A Non-POU domain-containi 99.8 6.9E-18 2.3E-22 119.6 12.6 84 223-306 10-93 (99)
91 1x4h_A RNA-binding protein 28; 99.8 6.1E-18 2.1E-22 122.6 12.6 83 31-113 12-101 (111)
92 3ulh_A THO complex subunit 4; 99.8 4.1E-18 1.4E-22 122.6 11.6 82 29-110 24-105 (107)
93 2kt5_A RNA and export factor-b 99.8 1.3E-17 4.4E-22 123.3 14.5 84 30-113 31-114 (124)
94 2cqi_A Nucleolysin TIAR; RNA r 99.8 8.3E-18 2.8E-22 120.1 12.9 83 31-114 12-94 (103)
95 2cpf_A RNA binding motif prote 99.8 3.6E-18 1.2E-22 120.9 10.9 84 32-115 3-90 (98)
96 2lxi_A RNA-binding protein 10; 99.8 9.5E-19 3.2E-23 121.7 7.7 78 228-305 1-86 (91)
97 2do0_A HnRNP M, heterogeneous 99.8 1.5E-17 5E-22 121.2 14.4 80 32-111 13-92 (114)
98 2dhg_A TRNA selenocysteine ass 99.8 5.7E-18 2E-22 121.2 11.8 83 32-114 7-91 (104)
99 1whw_A Hypothetical protein ri 99.8 8.4E-18 2.9E-22 119.2 12.5 83 225-307 5-93 (99)
100 2dng_A Eukaryotic translation 99.8 7.7E-18 2.6E-22 120.3 12.4 82 31-114 12-94 (103)
101 3ns6_A Eukaryotic translation 99.8 1.1E-18 3.6E-23 123.8 7.7 80 32-111 4-91 (100)
102 2dgv_A HnRNP M, heterogeneous 99.8 6.3E-18 2.2E-22 118.1 11.4 80 32-112 6-85 (92)
103 2lea_A Serine/arginine-rich sp 99.8 2.1E-18 7.3E-23 129.1 9.5 120 173-306 6-131 (135)
104 2cq1_A PTB-like protein L; RRM 99.8 1.3E-17 4.4E-22 117.6 12.8 83 29-116 10-94 (101)
105 2cqi_A Nucleolysin TIAR; RNA r 99.8 1.7E-17 5.9E-22 118.5 13.6 85 222-306 9-97 (103)
106 2cq3_A RNA-binding protein 9; 99.8 2.4E-17 8.1E-22 117.7 14.3 84 223-306 10-97 (103)
107 3s8s_A Histone-lysine N-methyl 99.8 5.7E-18 1.9E-22 121.9 11.0 79 226-304 4-88 (110)
108 2div_A TRNA selenocysteine ass 99.8 4.2E-18 1.4E-22 120.8 10.1 80 32-111 7-92 (99)
109 1x4d_A Matrin 3; structural ge 99.8 4.3E-18 1.5E-22 119.9 10.0 76 32-112 13-91 (102)
110 2ad9_A Polypyrimidine tract-bi 99.8 1.1E-17 3.6E-22 120.9 12.3 85 27-116 24-110 (119)
111 2dgo_A Cytotoxic granule-assoc 99.8 2.7E-17 9.4E-22 119.9 14.7 85 223-307 10-100 (115)
112 2dgw_A Probable RNA-binding pr 99.8 7.1E-18 2.4E-22 117.6 11.0 81 31-113 7-87 (91)
113 1x4g_A Nucleolysin TIAR; struc 99.8 1.1E-17 3.6E-22 120.8 12.3 82 225-306 22-103 (109)
114 3ucg_A Polyadenylate-binding p 99.8 4.5E-18 1.5E-22 118.1 9.8 79 32-111 4-83 (89)
115 1why_A Hypothetical protein ri 99.8 1.2E-17 4.2E-22 117.8 12.2 81 224-304 13-95 (97)
116 1x4f_A Matrin 3; structural ge 99.8 7.5E-18 2.6E-22 120.3 11.0 82 224-305 21-105 (112)
117 4a8x_A RNA-binding protein wit 99.8 4.1E-18 1.4E-22 118.1 9.3 79 33-111 3-83 (88)
118 2cqd_A RNA-binding region cont 99.8 1.2E-17 4.2E-22 122.0 12.2 83 31-114 14-97 (116)
119 2dnz_A Probable RNA-binding pr 99.8 1.6E-17 5.4E-22 116.8 12.3 81 226-306 3-89 (95)
120 2khc_A Testis-specific RNP-typ 99.8 6.3E-18 2.2E-22 123.9 10.7 83 28-110 34-117 (118)
121 2dgx_A KIAA0430 protein; RRM d 99.8 8.7E-18 3E-22 118.2 10.9 79 32-112 7-89 (96)
122 2cq0_A Eukaryotic translation 99.8 1.5E-17 5.1E-22 118.8 12.3 84 223-306 10-99 (103)
123 2ytc_A PRE-mRNA-splicing facto 99.8 9.9E-18 3.4E-22 115.3 10.9 77 224-300 8-85 (85)
124 2cqb_A Peptidyl-prolyl CIS-tra 99.8 1.3E-17 4.3E-22 119.0 11.8 83 224-306 8-96 (102)
125 2cpe_A RNA-binding protein EWS 99.8 8.3E-18 2.8E-22 122.3 11.0 84 31-114 12-104 (113)
126 3s7r_A Heterogeneous nuclear r 99.7 8.2E-18 2.8E-22 116.2 10.4 79 31-110 8-87 (87)
127 2dgs_A DAZ-associated protein 99.7 2.1E-17 7.2E-22 117.1 12.7 82 224-306 6-93 (99)
128 3md1_A Nuclear and cytoplasmic 99.7 1.1E-17 3.7E-22 114.6 10.8 76 228-303 1-82 (83)
129 2do0_A HnRNP M, heterogeneous 99.7 3.9E-17 1.3E-21 118.9 14.5 86 223-308 10-100 (114)
130 1x4e_A RNA binding motif, sing 99.7 2.1E-18 7.3E-23 118.6 7.3 79 32-110 3-82 (85)
131 1wex_A Hypothetical protein (r 99.7 2E-17 7E-22 117.3 12.5 79 32-115 13-93 (104)
132 2dh8_A DAZ-associated protein 99.7 7.8E-18 2.7E-22 120.7 10.4 83 31-114 13-96 (105)
133 1wi8_A EIF-4B, eukaryotic tran 99.7 1.5E-17 5E-22 119.0 11.8 81 32-114 13-95 (104)
134 2d9p_A Polyadenylate-binding p 99.7 2.1E-17 7E-22 118.1 12.6 84 223-306 10-97 (103)
135 2dnp_A RNA-binding protein 14; 99.7 2E-17 6.8E-22 115.0 12.1 81 224-306 5-85 (90)
136 2dgx_A KIAA0430 protein; RRM d 99.7 1.5E-17 5.3E-22 116.9 11.7 80 226-305 7-93 (96)
137 3bs9_A Nucleolysin TIA-1 isofo 99.7 8.7E-18 3E-22 116.1 10.2 78 226-303 4-87 (87)
138 1p1t_A Cleavage stimulation fa 99.7 3.8E-18 1.3E-22 122.2 8.6 80 32-111 6-86 (104)
139 2mss_A Protein (musashi1); RNA 99.7 2.6E-18 9E-23 115.2 7.3 74 36-110 1-75 (75)
140 2dnq_A RNA-binding protein 4B; 99.7 2.2E-17 7.5E-22 114.8 12.2 80 225-306 5-84 (90)
141 2jwn_A Embryonic polyadenylate 99.7 7.1E-18 2.4E-22 124.8 10.1 81 30-111 32-113 (124)
142 2cpz_A CUG triplet repeat RNA- 99.7 2.2E-17 7.6E-22 120.4 12.6 84 223-306 20-109 (115)
143 2cph_A RNA binding motif prote 99.7 3E-17 1E-21 118.1 13.2 84 223-306 10-101 (107)
144 2fy1_A RNA-binding motif prote 99.7 2.6E-17 8.8E-22 119.9 12.9 84 225-308 4-92 (116)
145 2cqp_A RNA-binding protein 12; 99.7 5.1E-18 1.7E-22 120.1 8.8 80 32-111 13-93 (98)
146 2m2b_A RNA-binding protein 10; 99.7 6.4E-18 2.2E-22 126.1 9.8 82 31-113 20-108 (131)
147 2cq4_A RNA binding motif prote 99.7 9.1E-18 3.1E-22 122.2 10.3 82 29-111 20-102 (114)
148 2dgt_A RNA-binding protein 30; 99.7 3.8E-17 1.3E-21 114.0 13.0 81 224-306 6-86 (92)
149 3n9u_C Cleavage and polyadenyl 99.7 9.6E-18 3.3E-22 128.4 10.8 78 33-110 54-134 (156)
150 3mdf_A Peptidyl-prolyl CIS-tra 99.7 1.6E-17 5.4E-22 114.3 10.7 76 225-300 4-85 (85)
151 1x4a_A Splicing factor, argini 99.7 5.1E-17 1.7E-21 117.3 13.9 82 30-113 18-99 (109)
152 1u6f_A Tcubp1, RNA-binding pro 99.7 2E-17 6.9E-22 124.9 12.3 87 29-115 37-124 (139)
153 2err_A Ataxin-2-binding protei 99.7 8.8E-18 3E-22 121.1 9.7 80 31-111 26-105 (109)
154 2hvz_A Splicing factor, argini 99.7 2E-17 6.8E-22 117.7 11.4 78 229-306 1-79 (101)
155 1x5u_A Splicing factor 3B subu 99.7 3.1E-17 1.1E-21 117.6 12.5 85 222-306 9-99 (105)
156 2cpf_A RNA binding motif prote 99.7 2E-17 6.8E-22 117.0 11.2 81 226-306 3-92 (98)
157 2x1f_A MRNA 3'-END-processing 99.7 1.9E-17 6.5E-22 116.6 11.0 79 227-305 1-85 (96)
158 2dnm_A SRP46 splicing factor; 99.7 2.7E-17 9.2E-22 117.5 12.0 83 224-306 9-97 (103)
159 1x4a_A Splicing factor, argini 99.7 5.8E-17 2E-21 116.9 13.8 83 223-305 17-102 (109)
160 2j76_E EIF-4B, EIF4B, eukaryot 99.7 4.2E-18 1.4E-22 120.8 7.6 82 29-112 14-97 (100)
161 2lkz_A RNA-binding protein 5; 99.7 9.8E-18 3.3E-22 116.9 9.3 76 226-301 7-94 (95)
162 3ex7_B RNA-binding protein 8A; 99.7 1.8E-17 6.1E-22 123.0 11.3 86 31-116 19-105 (126)
163 2dgu_A Heterogeneous nuclear r 99.7 5.1E-17 1.7E-21 115.9 13.2 82 225-308 8-89 (103)
164 1x5s_A Cold-inducible RNA-bind 99.7 2.5E-17 8.6E-22 117.4 11.6 83 224-306 8-96 (102)
165 2do4_A Squamous cell carcinoma 99.7 3.8E-17 1.3E-21 116.0 12.5 81 224-304 13-98 (100)
166 1wg5_A Heterogeneous nuclear r 99.7 2.1E-17 7.2E-22 118.0 11.2 80 31-111 12-92 (104)
167 2dnh_A Bruno-like 5, RNA bindi 99.7 4.5E-17 1.5E-21 116.8 12.8 83 224-306 11-101 (105)
168 4a8x_A RNA-binding protein wit 99.7 2.6E-17 8.7E-22 114.0 11.0 78 227-304 3-87 (88)
169 2e5h_A Zinc finger CCHC-type a 99.7 3.6E-17 1.2E-21 114.7 11.8 78 223-300 11-94 (94)
170 2cqc_A Arginine/serine-rich sp 99.7 3.3E-17 1.1E-21 115.2 11.5 80 222-301 9-94 (95)
171 2cpi_A CCR4-NOT transcription 99.7 2.2E-17 7.5E-22 119.4 10.8 83 32-114 13-102 (111)
172 1x5t_A Splicing factor 3B subu 99.7 2.5E-17 8.6E-22 116.0 10.8 81 226-306 3-90 (96)
173 2rs2_A Musashi-1, RNA-binding 99.7 1.6E-17 5.4E-22 119.7 9.9 85 26-111 17-102 (109)
174 2jrs_A RNA-binding protein 39; 99.7 3.2E-17 1.1E-21 117.8 11.4 82 222-303 20-107 (108)
175 2cqg_A TDP-43, TAR DNA-binding 99.7 6.6E-17 2.3E-21 115.4 13.0 82 31-114 12-94 (103)
176 2ek1_A RNA-binding protein 12; 99.7 5.8E-18 2E-22 119.1 7.4 78 33-110 14-92 (95)
177 1x5o_A RNA binding motif, sing 99.7 7.2E-17 2.5E-21 117.5 13.4 81 31-111 22-110 (114)
178 1x4b_A Heterogeneous nuclear r 99.7 3.1E-17 1E-21 119.8 11.5 84 29-113 22-106 (116)
179 1p27_B RNA-binding protein 8A; 99.7 2.5E-17 8.6E-22 118.3 10.8 81 224-304 19-105 (106)
180 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 3E-17 1E-21 124.2 11.7 83 28-110 57-140 (140)
181 1why_A Hypothetical protein ri 99.7 3.6E-17 1.2E-21 115.4 11.3 76 32-112 15-92 (97)
182 1whx_A Hypothetical protein ri 99.7 2.2E-17 7.6E-22 119.2 10.4 78 227-304 9-86 (111)
183 2la4_A Nuclear and cytoplasmic 99.7 1.7E-17 5.9E-22 118.0 9.7 77 226-302 25-101 (101)
184 2dnq_A RNA-binding protein 4B; 99.7 5E-17 1.7E-21 112.9 11.9 76 32-114 6-81 (90)
185 2db1_A Heterogeneous nuclear r 99.7 1.4E-17 4.9E-22 121.7 9.5 80 31-111 14-96 (118)
186 2err_A Ataxin-2-binding protei 99.7 2.7E-17 9.1E-22 118.5 10.8 82 222-303 23-108 (109)
187 1oo0_B CG8781-PA, drosophila Y 99.7 3.5E-17 1.2E-21 118.4 11.4 82 224-305 22-109 (110)
188 1wez_A HnRNP H', FTP-3, hetero 99.7 2.3E-17 8E-22 117.1 10.2 79 31-111 12-90 (102)
189 2krb_A Eukaryotic translation 99.7 5.8E-18 2E-22 115.2 6.7 72 35-107 2-80 (81)
190 1uaw_A Mouse-musashi-1; RNP-ty 99.7 5.8E-18 2E-22 114.1 6.6 75 35-110 1-76 (77)
191 2cpd_A Apobec-1 stimulating pr 99.7 1.2E-16 4E-21 113.2 13.5 80 223-304 10-91 (99)
192 1x4h_A RNA-binding protein 28; 99.7 8E-17 2.8E-21 116.7 12.9 83 224-306 11-105 (111)
193 2fc9_A NCL protein; structure 99.7 3.6E-17 1.2E-21 116.4 10.8 80 32-114 13-92 (101)
194 1x4c_A Splicing factor, argini 99.7 1E-16 3.5E-21 115.4 13.2 79 226-305 13-96 (108)
195 2cq2_A Hypothetical protein LO 99.7 3.5E-17 1.2E-21 116.9 10.5 82 224-305 21-109 (114)
196 1h2v_Z 20 kDa nuclear CAP bind 99.7 5.6E-17 1.9E-21 125.0 12.5 82 31-112 36-118 (156)
197 2xnq_A Nuclear polyadenylated 99.7 6.3E-17 2.1E-21 113.9 11.6 79 223-303 17-96 (97)
198 2dnn_A RNA-binding protein 12; 99.7 2.8E-17 9.5E-22 117.6 9.9 77 32-110 14-90 (109)
199 2cpj_A Non-POU domain-containi 99.7 6.1E-17 2.1E-21 114.7 11.6 78 31-113 12-89 (99)
200 1x4f_A Matrin 3; structural ge 99.7 2.7E-17 9.3E-22 117.4 9.6 79 30-113 21-102 (112)
201 2a3j_A U1 small nuclear ribonu 99.7 3.2E-17 1.1E-21 120.6 10.3 79 31-111 26-108 (127)
202 2cpy_A RNA-binding protein 12; 99.7 1.5E-17 5.2E-22 120.9 8.4 80 31-111 12-92 (114)
203 2dis_A Unnamed protein product 99.7 4.3E-17 1.5E-21 117.7 10.8 83 32-114 6-93 (109)
204 2ki2_A SS-DNA binding protein 99.7 4E-18 1.4E-22 118.6 5.0 78 35-113 2-80 (90)
205 2jvo_A Nucleolar protein 3; nu 99.7 4.3E-17 1.5E-21 117.0 10.5 79 224-304 27-105 (108)
206 1rk8_A CG8781-PA, CG8781-PA pr 99.7 4.9E-17 1.7E-21 126.4 11.6 85 30-114 68-153 (165)
207 2dgp_A Bruno-like 4, RNA bindi 99.7 8.2E-17 2.8E-21 115.6 12.0 84 223-306 8-100 (106)
208 2cpe_A RNA-binding protein EWS 99.7 1E-16 3.5E-21 116.4 12.6 83 224-306 11-107 (113)
209 2e5j_A Methenyltetrahydrofolat 99.7 6.3E-17 2.1E-21 114.1 11.1 81 223-304 14-96 (97)
210 2dhg_A TRNA selenocysteine ass 99.7 5.3E-17 1.8E-21 116.1 10.8 83 225-307 6-95 (104)
211 2jvr_A Nucleolar protein 3; RN 99.7 3.4E-17 1.2E-21 117.3 9.8 78 226-303 26-106 (111)
212 2dgv_A HnRNP M, heterogeneous 99.7 4.5E-17 1.5E-21 113.8 10.2 80 225-304 5-88 (92)
213 3p5t_L Cleavage and polyadenyl 99.7 8E-18 2.7E-22 117.0 6.3 77 229-305 2-86 (90)
214 2kvi_A Nuclear polyadenylated 99.7 3.4E-17 1.1E-21 115.2 9.6 80 224-305 6-86 (96)
215 1rk8_A CG8781-PA, CG8781-PA pr 99.7 3.6E-17 1.2E-21 127.1 10.7 131 176-306 11-156 (165)
216 2a3j_A U1 small nuclear ribonu 99.7 4.6E-17 1.6E-21 119.8 10.6 80 225-304 26-112 (127)
217 2nlw_A Eukaryotic translation 99.7 2.3E-17 7.9E-22 118.0 8.8 79 32-111 13-98 (105)
218 2la6_A RNA-binding protein FUS 99.7 6.4E-17 2.2E-21 114.5 11.0 79 222-300 7-99 (99)
219 2hgl_A HNRPF protein, heteroge 99.7 1.4E-17 4.9E-22 123.9 7.9 80 30-110 40-122 (136)
220 2lea_A Serine/arginine-rich sp 99.7 1.7E-17 5.8E-22 124.2 8.4 83 30-112 43-126 (135)
221 2ywk_A Putative RNA-binding pr 99.7 5.3E-17 1.8E-21 114.1 10.4 78 224-301 12-94 (95)
222 2kxn_B Transformer-2 protein h 99.7 4.6E-17 1.6E-21 120.7 10.5 82 223-304 41-128 (129)
223 2cqd_A RNA-binding region cont 99.7 1.6E-16 5.5E-21 116.0 13.3 83 223-306 12-100 (116)
224 1x5p_A Negative elongation fac 99.7 2.2E-16 7.4E-21 111.3 13.4 81 224-306 11-91 (97)
225 2e5j_A Methenyltetrahydrofolat 99.7 7.4E-17 2.5E-21 113.7 10.9 78 30-111 15-92 (97)
226 1wf1_A RNA-binding protein RAL 99.7 8.8E-17 3E-21 116.2 11.5 74 32-112 25-99 (110)
227 2dnp_A RNA-binding protein 14; 99.7 9.4E-17 3.2E-21 111.5 11.2 75 32-113 7-81 (90)
228 2jvr_A Nucleolar protein 3; RN 99.7 2.1E-17 7.3E-22 118.4 8.1 79 31-112 25-104 (111)
229 1wg1_A KIAA1579 protein, homol 99.7 7.3E-17 2.5E-21 111.5 10.6 82 227-309 4-85 (88)
230 1x4g_A Nucleolysin TIAR; struc 99.7 1E-16 3.5E-21 115.6 11.4 80 31-115 22-101 (109)
231 2cpi_A CCR4-NOT transcription 99.7 1E-16 3.5E-21 115.9 11.4 81 224-304 11-103 (111)
232 2cqh_A IGF-II mRNA-binding pro 99.7 5.1E-17 1.8E-21 113.7 9.4 80 226-306 6-87 (93)
233 2dgt_A RNA-binding protein 30; 99.7 1.4E-16 4.9E-21 111.1 11.7 76 32-114 8-83 (92)
234 1u6f_A Tcubp1, RNA-binding pro 99.7 2.3E-16 7.9E-21 119.1 13.6 84 224-307 38-127 (139)
235 2lmi_A GRSF-1, G-rich sequence 99.7 1.4E-17 4.9E-22 119.5 6.5 80 30-110 7-89 (107)
236 1wel_A RNA-binding protein 12; 99.7 3.9E-17 1.3E-21 120.7 8.9 82 28-110 19-101 (124)
237 2xnq_A Nuclear polyadenylated 99.7 1.3E-16 4.3E-21 112.3 11.1 79 26-111 14-93 (97)
238 1whx_A Hypothetical protein ri 99.7 1.1E-16 3.6E-21 115.7 10.9 77 32-113 8-84 (111)
239 2ytc_A PRE-mRNA-splicing facto 99.7 8.9E-17 3E-21 110.5 10.1 74 32-110 10-84 (85)
240 2jvo_A Nucleolar protein 3; nu 99.7 7.4E-17 2.5E-21 115.8 10.0 77 28-111 25-101 (108)
241 2dng_A Eukaryotic translation 99.7 2E-16 6.7E-21 112.9 12.2 81 224-306 11-97 (103)
242 1nu4_A U1A RNA binding domain; 99.7 9.1E-17 3.1E-21 113.4 10.3 80 225-304 5-91 (97)
243 1x4c_A Splicing factor, argini 99.7 1.5E-16 5.3E-21 114.4 11.7 77 32-114 13-94 (108)
244 2cpd_A Apobec-1 stimulating pr 99.7 2.8E-16 9.4E-21 111.3 12.7 77 31-114 12-90 (99)
245 2kt5_A RNA and export factor-b 99.7 3.5E-16 1.2E-20 115.5 13.7 83 224-306 31-118 (124)
246 2dgu_A Heterogeneous nuclear r 99.7 2.2E-16 7.7E-21 112.6 12.2 77 32-115 9-85 (103)
247 1wi8_A EIF-4B, eukaryotic tran 99.7 2.9E-16 9.8E-21 112.3 12.8 81 224-306 11-98 (104)
248 1nu4_A U1A RNA binding domain; 99.7 2.8E-17 9.4E-22 116.1 7.4 79 32-112 6-88 (97)
249 2div_A TRNA selenocysteine ass 99.7 8.8E-17 3E-21 113.9 9.9 80 225-304 6-96 (99)
250 1iqt_A AUF1, heterogeneous nuc 99.7 1.5E-17 5.2E-22 111.4 5.2 74 36-110 1-75 (75)
251 2dis_A Unnamed protein product 99.7 2.1E-16 7.3E-21 114.0 11.6 82 225-306 5-96 (109)
252 1s79_A Lupus LA protein; RRM, 99.7 7.9E-17 2.7E-21 114.3 9.1 76 225-301 8-88 (103)
253 3ucg_A Polyadenylate-binding p 99.7 1.4E-16 4.7E-21 110.6 10.2 75 227-302 5-85 (89)
254 2khc_A Testis-specific RNP-typ 99.7 1.3E-16 4.5E-21 116.8 10.5 78 223-300 35-118 (118)
255 2diu_A KIAA0430 protein; struc 99.7 1.5E-16 5.2E-21 107.5 9.8 76 227-306 7-88 (96)
256 2la4_A Nuclear and cytoplasmic 99.7 1E-16 3.5E-21 114.0 9.6 75 32-111 25-99 (101)
257 1wf1_A RNA-binding protein RAL 99.7 2.8E-16 9.5E-21 113.5 11.9 78 225-304 24-102 (110)
258 3ex7_B RNA-binding protein 8A; 99.7 1.5E-16 5.1E-21 118.0 10.7 83 224-306 18-106 (126)
259 2cpx_A Hypothetical protein FL 99.7 1.9E-16 6.4E-21 115.5 11.0 83 29-114 20-106 (115)
260 3ns6_A Eukaryotic translation 99.7 3.8E-17 1.3E-21 115.8 7.1 76 227-302 5-93 (100)
261 2diu_A KIAA0430 protein; struc 99.7 2.7E-16 9.2E-21 106.3 10.5 75 34-117 8-88 (96)
262 2fc8_A NCL protein; structure 99.7 3.3E-16 1.1E-20 111.5 11.7 80 31-113 12-92 (102)
263 3ulh_A THO complex subunit 4; 99.7 2.1E-16 7.3E-21 113.6 10.7 76 225-300 26-106 (107)
264 1fj7_A Nucleolin RBD1, protein 99.7 2.2E-17 7.6E-22 117.4 5.2 79 32-112 15-94 (101)
265 2kvi_A Nuclear polyadenylated 99.7 1.8E-16 6.2E-21 111.5 9.8 76 32-114 8-84 (96)
266 2e5i_A Heterogeneous nuclear r 99.7 8.1E-16 2.8E-20 112.0 13.4 79 227-305 22-105 (124)
267 2fc9_A NCL protein; structure 99.7 4.6E-16 1.6E-20 110.6 11.9 79 224-305 11-94 (101)
268 2dgw_A Probable RNA-binding pr 99.7 3.5E-16 1.2E-20 108.9 11.0 78 225-304 7-89 (91)
269 1p1t_A Cleavage stimulation fa 99.7 8.4E-17 2.9E-21 115.1 8.1 80 226-305 6-91 (104)
270 2dha_A FLJ20171 protein; RRM d 99.7 4.9E-17 1.7E-21 118.8 6.8 78 32-110 21-102 (123)
271 2cqp_A RNA-binding protein 12; 99.7 1.4E-16 4.9E-21 112.6 9.1 79 224-302 11-95 (98)
272 2dh8_A DAZ-associated protein 99.7 1.8E-16 6.1E-21 113.6 9.6 82 223-305 11-98 (105)
273 1fjc_A Nucleolin RBD2, protein 99.7 8.9E-17 3.1E-21 113.2 7.9 79 31-113 13-91 (96)
274 3lqv_A PRE-mRNA branch site pr 99.7 2.9E-16 1E-20 114.4 10.9 79 225-303 5-86 (115)
275 3zzy_A Polypyrimidine tract-bi 99.7 4.5E-16 1.5E-20 113.7 11.7 79 229-307 29-111 (130)
276 2nlw_A Eukaryotic translation 99.7 2.4E-16 8.2E-21 112.7 9.9 80 224-303 11-101 (105)
277 2xs2_A Deleted in azoospermia- 99.7 1.1E-16 3.8E-21 114.0 8.2 80 32-113 7-86 (102)
278 2cpx_A Hypothetical protein FL 99.7 5.4E-16 1.9E-20 113.0 11.9 82 225-306 22-109 (115)
279 2m2b_A RNA-binding protein 10; 99.7 2.6E-16 8.9E-21 117.3 10.3 81 224-305 19-111 (131)
280 2cq4_A RNA binding motif prote 99.7 7.2E-17 2.5E-21 117.5 6.9 79 225-304 22-106 (114)
281 2f3j_A RNA and export factor b 99.7 4E-16 1.4E-20 122.1 11.4 82 30-111 84-165 (177)
282 3q2s_C Cleavage and polyadenyl 99.7 1.3E-16 4.5E-21 130.2 8.9 78 33-110 67-147 (229)
283 2ki2_A SS-DNA binding protein 99.7 4.8E-17 1.6E-21 113.1 5.3 77 229-306 2-84 (90)
284 2cq2_A Hypothetical protein LO 99.7 1.6E-16 5.5E-21 113.4 8.1 79 31-114 22-107 (114)
285 3s7r_A Heterogeneous nuclear r 99.7 4.1E-16 1.4E-20 107.6 9.9 75 224-299 7-87 (87)
286 2e44_A Insulin-like growth fac 99.7 7.3E-16 2.5E-20 108.5 11.3 79 225-303 12-93 (96)
287 2rs2_A Musashi-1, RNA-binding 99.7 4.4E-16 1.5E-20 112.0 10.4 82 223-305 20-107 (109)
288 2ek1_A RNA-binding protein 12; 99.7 1.2E-16 4E-21 112.3 7.2 77 225-301 12-94 (95)
289 2hgm_A HNRPF protein, heteroge 99.7 1.3E-16 4.6E-21 116.7 7.6 79 30-110 38-118 (126)
290 1h2v_Z 20 kDa nuclear CAP bind 99.7 6.6E-16 2.2E-20 118.9 11.9 83 224-306 35-123 (156)
291 2cqh_A IGF-II mRNA-binding pro 99.7 3.6E-16 1.2E-20 109.3 9.5 76 32-113 6-83 (93)
292 2j76_E EIF-4B, EIF4B, eukaryot 99.7 1.3E-16 4.5E-21 113.0 7.2 79 223-303 14-99 (100)
293 2cqg_A TDP-43, TAR DNA-binding 99.7 1.5E-15 5E-20 108.4 12.7 80 224-305 11-96 (103)
294 2hgn_A Heterogeneous nuclear r 99.7 4.2E-17 1.4E-21 121.8 4.8 79 31-111 43-121 (139)
295 3zzy_A Polypyrimidine tract-bi 99.7 6.8E-16 2.3E-20 112.8 11.0 78 32-113 26-106 (130)
296 1x4e_A RNA binding motif, sing 99.7 8.3E-17 2.9E-21 110.6 5.8 75 226-300 3-83 (85)
297 1x4b_A Heterogeneous nuclear r 99.7 6.1E-16 2.1E-20 112.9 10.6 81 225-306 24-110 (116)
298 2e5g_A U6 snRNA-specific termi 99.7 8.9E-16 3E-20 107.5 11.0 75 32-111 6-80 (94)
299 2e5g_A U6 snRNA-specific termi 99.7 1.1E-15 3.6E-20 107.1 11.2 79 226-305 6-85 (94)
300 1sjr_A Polypyrimidine tract-bi 99.7 9.3E-16 3.2E-20 116.3 11.6 77 228-304 46-126 (164)
301 3n9u_C Cleavage and polyadenyl 99.7 4.7E-16 1.6E-20 119.0 10.1 76 227-302 54-137 (156)
302 2mss_A Protein (musashi1); RNA 99.7 2.3E-16 7.8E-21 105.6 7.3 69 230-299 1-75 (75)
303 1wg5_A Heterogeneous nuclear r 99.7 1.5E-15 5E-20 108.4 11.8 80 224-304 11-96 (104)
304 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 1.1E-15 3.7E-20 115.6 11.7 78 222-299 57-140 (140)
305 2fc8_A NCL protein; structure 99.7 1.2E-15 4.2E-20 108.5 11.4 81 222-305 9-95 (102)
306 1x5p_A Negative elongation fac 99.7 1.8E-15 6.2E-20 106.5 12.0 77 31-114 12-88 (97)
307 1fj7_A Nucleolin RBD1, protein 99.7 2.7E-16 9.3E-21 111.8 7.7 81 224-306 13-99 (101)
308 2lcw_A RNA-binding protein FUS 99.5 9.3E-18 3.2E-22 122.6 0.0 83 32-114 5-96 (116)
309 1fjc_A Nucleolin RBD2, protein 99.6 1E-15 3.4E-20 107.7 10.5 81 224-305 12-94 (96)
310 1wg1_A KIAA1579 protein, homol 99.6 4.6E-16 1.6E-20 107.5 8.6 73 33-111 4-76 (88)
311 2krb_A Eukaryotic translation 99.6 1.9E-16 6.4E-21 107.7 6.4 70 228-297 1-81 (81)
312 1x5o_A RNA binding motif, sing 99.6 1.6E-15 5.4E-20 110.3 11.8 79 224-302 21-112 (114)
313 1sjr_A Polypyrimidine tract-bi 99.6 8.8E-16 3E-20 116.5 10.7 80 31-113 43-124 (164)
314 2bz2_A Negative elongation fac 99.6 9.4E-16 3.2E-20 112.2 10.4 81 224-306 35-115 (121)
315 2e5i_A Heterogeneous nuclear r 99.6 3.8E-15 1.3E-19 108.4 13.4 77 32-113 23-102 (124)
316 2e44_A Insulin-like growth fac 99.6 8.5E-16 2.9E-20 108.1 9.6 78 32-112 13-91 (96)
317 2voo_A Lupus LA protein; RNA-b 99.6 3.2E-16 1.1E-20 124.6 8.0 79 31-110 106-184 (193)
318 2jwn_A Embryonic polyadenylate 99.6 9.3E-16 3.2E-20 113.3 9.8 76 227-303 35-116 (124)
319 1uaw_A Mouse-musashi-1; RNP-ty 99.6 4E-16 1.4E-20 105.0 7.1 70 229-299 1-76 (77)
320 2cpy_A RNA-binding protein 12; 99.6 6.2E-16 2.1E-20 112.3 8.5 80 224-304 11-96 (114)
321 2j8a_A Histone-lysine N-methyl 99.6 4.7E-16 1.6E-20 111.2 7.4 76 35-110 3-93 (136)
322 2hzc_A Splicing factor U2AF 65 99.6 1.3E-15 4.4E-20 105.1 9.6 72 226-298 4-86 (87)
323 3beg_B Splicing factor, argini 99.6 1.9E-15 6.5E-20 109.8 10.5 76 227-303 15-95 (115)
324 2hzc_A Splicing factor U2AF 65 99.6 1.1E-15 3.9E-20 105.4 8.9 71 32-108 4-85 (87)
325 3beg_B Splicing factor, argini 99.6 1.7E-15 5.7E-20 110.1 9.9 73 32-110 14-91 (115)
326 3egn_A RNA-binding protein 40; 99.6 5.9E-16 2E-20 117.4 7.7 81 31-111 42-128 (143)
327 1wez_A HnRNP H', FTP-3, hetero 99.6 1.6E-15 5.6E-20 107.5 9.1 78 224-303 11-93 (102)
328 3pgw_S U1-70K; protein-RNA com 99.6 1.5E-16 5.2E-21 141.9 4.6 80 225-304 99-184 (437)
329 3d2w_A TAR DNA-binding protein 99.6 2.8E-15 9.6E-20 103.5 9.9 77 224-304 7-86 (89)
330 2lmi_A GRSF-1, G-rich sequence 99.6 1.4E-16 4.9E-21 114.3 3.4 79 224-303 7-93 (107)
331 2db1_A Heterogeneous nuclear r 99.6 1.5E-15 5E-20 110.9 8.8 78 225-303 14-99 (118)
332 2dnn_A RNA-binding protein 12; 99.6 2.7E-15 9.3E-20 107.2 9.9 75 226-302 14-93 (109)
333 3egn_A RNA-binding protein 40; 99.6 2E-15 6.9E-20 114.4 9.7 82 225-306 42-134 (143)
334 2dnl_A Cytoplasmic polyadenyla 99.6 2.4E-15 8.4E-20 109.2 9.7 74 32-108 6-83 (114)
335 2hgl_A HNRPF protein, heteroge 99.6 1.5E-15 5.3E-20 112.9 8.1 78 225-303 41-126 (136)
336 3u1l_A PRE-mRNA-splicing facto 99.6 1.5E-15 5.3E-20 123.1 8.6 81 225-305 131-232 (240)
337 2xs2_A Deleted in azoospermia- 99.6 1.1E-15 3.7E-20 108.8 6.8 80 225-306 6-90 (102)
338 2f3j_A RNA and export factor b 99.6 4.1E-15 1.4E-19 116.4 10.1 80 224-303 84-168 (177)
339 2lcw_A RNA-binding protein FUS 99.4 7.4E-17 2.5E-21 117.7 0.0 82 225-306 4-99 (116)
340 1iqt_A AUF1, heterogeneous nuc 99.6 1E-15 3.5E-20 102.4 5.5 69 230-299 1-75 (75)
341 2pe8_A Splicing factor 45; RRM 99.6 1.1E-14 3.9E-19 103.3 11.0 80 32-111 6-92 (105)
342 3d2w_A TAR DNA-binding protein 99.6 5.5E-15 1.9E-19 102.0 9.0 73 31-111 8-82 (89)
343 1qm9_A Polypyrimidine tract-bi 99.6 8.7E-15 3E-19 117.4 11.6 106 2-111 65-195 (198)
344 2pe8_A Splicing factor 45; RRM 99.6 1.1E-14 3.8E-19 103.4 10.8 77 225-301 5-93 (105)
345 1wf0_A TDP-43, TAR DNA-binding 99.6 3.5E-15 1.2E-19 103.0 7.9 79 226-306 3-82 (88)
346 1wel_A RNA-binding protein 12; 99.6 1.8E-15 6.2E-20 111.6 6.7 78 225-303 22-105 (124)
347 3pgw_S U1-70K; protein-RNA com 99.6 6.1E-15 2.1E-19 131.6 11.1 82 32-113 100-182 (437)
348 2dit_A HIV TAT specific factor 99.6 4.3E-14 1.5E-18 102.1 13.0 82 224-305 11-105 (112)
349 1wf0_A TDP-43, TAR DNA-binding 99.6 2.5E-15 8.4E-20 103.8 6.1 76 32-113 3-78 (88)
350 2dnl_A Cytoplasmic polyadenyla 99.6 9.9E-15 3.4E-19 105.9 9.3 100 226-328 6-114 (114)
351 3q2s_C Cleavage and polyadenyl 99.6 5E-15 1.7E-19 120.8 8.4 75 227-301 67-149 (229)
352 2bz2_A Negative elongation fac 99.6 1.4E-14 4.8E-19 106.0 9.9 77 30-113 35-111 (121)
353 2adc_A Polypyrimidine tract-bi 99.6 1.5E-14 5.2E-19 118.6 10.9 83 220-302 26-110 (229)
354 2hgn_A Heterogeneous nuclear r 99.5 3.3E-15 1.1E-19 111.4 4.8 78 225-304 43-125 (139)
355 2dha_A FLJ20171 protein; RRM d 99.5 8.7E-15 3E-19 106.8 6.1 77 226-303 21-106 (123)
356 2hgm_A HNRPF protein, heteroge 99.5 1.5E-14 5.1E-19 105.8 7.1 75 226-302 40-121 (126)
357 3v4m_A Splicing factor U2AF 65 99.5 4.7E-14 1.6E-18 100.2 9.2 77 226-302 3-97 (105)
358 3u1l_A PRE-mRNA-splicing facto 99.5 2.2E-14 7.7E-19 116.3 8.6 79 31-114 131-230 (240)
359 2dit_A HIV TAT specific factor 99.5 2.4E-13 8.3E-18 98.1 12.1 79 31-112 12-101 (112)
360 1jmt_A Splicing factor U2AF 35 99.5 9.5E-15 3.3E-19 103.7 4.4 72 39-110 20-103 (104)
361 2voo_A Lupus LA protein; RNA-b 99.5 7.6E-14 2.6E-18 110.8 9.9 117 180-301 63-186 (193)
362 3s6e_A RNA-binding protein 39; 99.5 4.3E-14 1.5E-18 101.5 7.6 77 226-302 5-93 (114)
363 3v4m_A Splicing factor U2AF 65 99.5 1E-13 3.5E-18 98.4 9.0 79 32-110 3-94 (105)
364 2j8a_A Histone-lysine N-methyl 99.5 8E-14 2.7E-18 99.8 7.5 73 229-301 3-95 (136)
365 3ue2_A Poly(U)-binding-splicin 99.5 2.5E-13 8.4E-18 98.3 9.1 78 33-110 19-106 (118)
366 3ue2_A Poly(U)-binding-splicin 99.5 3.3E-13 1.1E-17 97.6 9.2 76 226-301 18-108 (118)
367 2d9o_A DNAJ (HSP40) homolog, s 99.4 3E-12 1E-16 89.5 12.1 65 238-304 27-92 (100)
368 3tht_A Alkylated DNA repair pr 99.4 6E-13 2E-17 113.8 9.8 80 223-302 13-99 (345)
369 1jmt_A Splicing factor U2AF 35 99.4 7E-13 2.4E-17 94.0 8.5 56 245-300 43-104 (104)
370 2d9o_A DNAJ (HSP40) homolog, s 99.4 5.4E-12 1.8E-16 88.3 12.1 65 44-114 27-91 (100)
371 2dnr_A Synaptojanin-1; RRM dom 99.4 4.8E-12 1.6E-16 84.7 9.3 76 224-302 3-86 (91)
372 3tht_A Alkylated DNA repair pr 99.3 2.5E-12 8.5E-17 110.0 9.1 76 30-110 14-96 (345)
373 3s6e_A RNA-binding protein 39; 99.3 1.2E-11 4E-16 88.8 9.8 76 32-110 5-90 (114)
374 1owx_A Lupus LA protein, SS-B, 99.3 4.2E-11 1.4E-15 85.9 10.1 78 224-301 14-95 (121)
375 1ufw_A Synaptojanin 2; RNP dom 99.2 1E-10 3.6E-15 78.6 8.5 76 223-301 10-94 (95)
376 1owx_A Lupus LA protein, SS-B, 99.1 5.4E-10 1.8E-14 80.1 8.8 75 31-110 15-93 (121)
377 2dnr_A Synaptojanin-1; RRM dom 99.0 8.7E-10 3E-14 73.8 7.7 67 36-110 9-83 (91)
378 2l9w_A U4/U6 snRNA-associated- 99.0 8.2E-09 2.8E-13 70.7 10.0 72 227-298 20-96 (117)
379 3dxb_A Thioredoxin N-terminall 98.9 4.4E-09 1.5E-13 85.5 7.5 62 240-301 141-212 (222)
380 3dxb_A Thioredoxin N-terminall 98.8 7.3E-09 2.5E-13 84.2 8.2 65 46-110 141-210 (222)
381 1ufw_A Synaptojanin 2; RNP dom 98.8 8.6E-09 2.9E-13 69.3 6.5 68 35-110 16-92 (95)
382 2l9w_A U4/U6 snRNA-associated- 98.6 2.5E-07 8.6E-12 63.4 8.5 72 32-108 19-95 (117)
383 1wey_A Calcipressin 1; structu 98.6 6.6E-07 2.2E-11 61.3 9.4 76 228-303 5-85 (104)
384 2dhx_A Poly (ADP-ribose) polym 98.4 3.5E-06 1.2E-10 57.4 10.1 88 33-143 7-99 (104)
385 2dhx_A Poly (ADP-ribose) polym 98.2 6.5E-05 2.2E-09 51.2 11.9 79 227-308 7-90 (104)
386 1whv_A Poly(A)-specific ribonu 98.0 5E-05 1.7E-09 51.0 8.0 58 31-96 13-70 (100)
387 1uw4_A UPF3X; nonsense mediate 97.9 5.5E-05 1.9E-09 51.0 8.2 68 35-102 2-72 (91)
388 1whv_A Poly(A)-specific ribonu 97.9 7E-05 2.4E-09 50.3 8.2 58 225-285 13-70 (100)
389 1wey_A Calcipressin 1; structu 97.9 0.00012 3.9E-09 50.2 8.7 72 35-111 6-82 (104)
390 1wwh_A Nucleoporin 35, nucleop 97.5 0.00046 1.6E-08 48.7 8.1 71 227-299 23-94 (119)
391 1wwh_A Nucleoporin 35, nucleop 97.5 0.00031 1.1E-08 49.5 7.1 72 31-109 21-93 (119)
392 3ctr_A Poly(A)-specific ribonu 97.5 0.00016 5.4E-09 48.8 5.1 55 34-96 6-60 (101)
393 1uw4_A UPF3X; nonsense mediate 97.5 0.00065 2.2E-08 45.7 7.7 73 229-301 2-87 (91)
394 3ctr_A Poly(A)-specific ribonu 97.4 0.00034 1.2E-08 47.2 5.4 54 229-285 7-60 (101)
395 2l08_A Regulator of nonsense t 97.2 0.00037 1.3E-08 47.1 4.0 71 32-102 7-80 (97)
396 3p3d_A Nucleoporin 53; structu 96.8 0.0015 5.3E-08 46.6 4.3 76 33-110 6-96 (132)
397 3pq1_A Poly(A) RNA polymerase; 96.6 0.0013 4.5E-08 58.3 3.8 57 32-93 51-107 (464)
398 3p3d_A Nucleoporin 53; structu 96.6 0.0043 1.5E-07 44.4 5.5 71 228-300 7-97 (132)
399 2l08_A Regulator of nonsense t 96.4 0.011 3.9E-07 39.9 6.7 73 228-300 9-94 (97)
400 3pq1_A Poly(A) RNA polymerase; 96.3 0.0031 1E-07 56.0 4.4 55 228-283 53-108 (464)
401 3d45_A Poly(A)-specific ribonu 93.2 0.63 2.2E-05 42.1 10.5 57 33-97 439-495 (507)
402 3d45_A Poly(A)-specific ribonu 91.4 1 3.4E-05 40.8 9.4 57 227-286 439-495 (507)
403 2g0c_A ATP-dependent RNA helic 78.1 2.1 7.3E-05 27.2 3.4 60 238-300 11-75 (76)
404 4eyt_A Telomerase associated p 75.2 14 0.00049 24.0 8.7 60 31-97 9-68 (129)
405 3j21_T 50S ribosomal protein L 68.1 17 0.00057 23.8 5.7 56 37-94 25-82 (86)
406 4e8u_A Putative uncharacterize 67.6 15 0.00051 27.6 6.1 50 35-86 13-73 (172)
407 2cu1_A Mitogen-activated prote 58.8 38 0.0013 22.7 6.5 70 233-305 21-91 (103)
408 1vq8_S 50S ribosomal protein L 53.6 19 0.00064 23.5 4.0 54 37-92 24-79 (85)
409 3u5e_X 60S ribosomal protein L 44.3 49 0.0017 23.9 5.3 56 37-94 81-138 (142)
410 4a17_R RPL23A, 60S ribosomal p 43.2 49 0.0017 24.1 5.2 56 37-94 89-146 (150)
411 4eyt_A Telomerase associated p 41.0 72 0.0025 20.7 8.4 59 227-287 11-69 (129)
412 3fry_A Probable copper-exporti 38.5 65 0.0022 19.4 5.9 56 33-94 5-60 (73)
413 2zkr_s 60S ribosomal protein L 36.8 65 0.0022 23.6 5.0 56 37-94 95-152 (156)
414 1xn9_A 30S ribosomal protein S 36.3 67 0.0023 21.6 4.7 47 44-91 28-80 (101)
415 2v94_A RPS24, 30S ribosomal pr 35.8 79 0.0027 21.5 5.1 47 44-91 37-89 (107)
416 1ywx_A 30S ribosomal protein S 35.7 71 0.0024 21.6 4.7 46 44-90 28-79 (102)
417 3iz5_X 60S ribosomal protein L 34.5 47 0.0016 24.2 4.0 53 38-92 92-146 (152)
418 3lpe_A Putative transcription 31.9 1.1E+02 0.0037 20.0 5.2 34 60-97 39-72 (92)
419 4e8u_A Putative uncharacterize 30.3 1.7E+02 0.0059 21.8 6.8 47 230-276 14-74 (172)
420 3u5c_Y RP50, 40S ribosomal pro 30.0 1.4E+02 0.0047 21.3 5.7 47 44-91 33-85 (135)
421 3lo3_A Uncharacterized conserv 25.5 1.4E+02 0.0048 19.5 4.9 21 74-94 52-72 (94)
422 3bgu_A Ferredoxin-like protein 25.2 1.7E+02 0.0057 20.0 7.1 58 34-92 23-90 (116)
423 3h7h_B Transcription elongatio 22.9 96 0.0033 21.0 3.7 33 255-287 41-74 (106)
424 4a4j_A Pacszia, cation-transpo 22.1 1.3E+02 0.0043 17.5 4.9 55 229-283 4-61 (69)
425 2xzm_P RPS24E; ribosome, trans 21.3 1.7E+02 0.0059 21.2 4.9 47 44-91 31-83 (149)
426 2g1d_A 30S ribosomal protein S 21.1 69 0.0024 21.4 2.6 47 44-91 29-81 (98)
427 2inr_A DNA topoisomerase 4 sub 21.1 1.7E+02 0.006 26.2 5.9 96 35-152 276-374 (514)
428 2qyc_A Ferredoxin-like protein 20.7 1.9E+02 0.0065 19.0 7.8 56 35-91 7-72 (103)
No 1
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=8.3e-46 Score=317.70 Aligned_cols=251 Identities=18% Similarity=0.296 Sum_probs=213.3
Q ss_pred CCcCcccccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeee
Q psy8956 26 KENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPV 105 (333)
Q Consensus 26 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i 105 (333)
.......+.++|||+|||+++|+++|+++|+.||.|.++.++++..+ ++|||||+|.+.++|.+|++ ++|..+.|+.|
T Consensus 33 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~-~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i 110 (292)
T 2ghp_A 33 EALTRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK-NFRFARIEFARYDGALAAIT-KTHKVVGQNEI 110 (292)
T ss_dssp ---------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS-SSEEEEEEESSHHHHHHHHT-TTTCEETTEEC
T ss_pred cccccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC-CcEEEEEEECCHHHHHHHHH-hCCcEeCCcEE
Confidence 44455678899999999999999999999999999999999998755 58999999999999999995 89999999999
Q ss_pred EEeeeccCCCCCCCCCCCCcccCCCCeEEEeCCCCCCCHHHHHHHhhccC-ceEEEEEEeCCCCCceeEEEEEeCCHHHH
Q psy8956 106 IITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG-NIIEVKIVRDENGKSKGFGFIQFFSYKAA 184 (333)
Q Consensus 106 ~v~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g-~v~~~~~~~~~~~~~~~~~~v~f~~~~~a 184 (333)
.|.++ ...+|+|+|||..+++++|+++|+.|| .|..+.+..+..+.++|+|||+|.+.++|
T Consensus 111 ~v~~~------------------~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a 172 (292)
T 2ghp_A 111 IVSHL------------------TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDA 172 (292)
T ss_dssp EEEEC------------------CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHH
T ss_pred EEEEC------------------CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHH
Confidence 99976 478999999999999999999999999 99999999887788899999999999999
Q ss_pred HHHHHHhCCceeccceeEEEeeeecCCCccCCCCCCCCCCCCccceEEEecCCCC-CCHHHHHHHhhccCCeeEEEeecC
Q psy8956 185 EKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSN-INNSEFEELFARFGTITSSSLVSD 263 (333)
Q Consensus 185 ~~a~~~l~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~-~~~~~l~~~f~~~g~v~~v~i~~~ 263 (333)
..|+..+++..+.|+.+.|.++......... .......++|+|+|||.. +++++|+++|++||.|..+++..+
T Consensus 173 ~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~------~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~ 246 (292)
T 2ghp_A 173 RYCVEKLNGLKIEGYTLVTKVSNPLEKSKRT------DSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAG 246 (292)
T ss_dssp HHHHHHHTTCEETTEECEEEECCCC---------------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSC
T ss_pred HHHHHHhCCCEeCCcEEEEEECCCCcccccc------cccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEec
Confidence 9999999999999999999998654432211 123456789999999999 999999999999999999999764
Q ss_pred -------CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEecCCCC
Q psy8956 264 -------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKP 303 (333)
Q Consensus 264 -------~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~a~~~~ 303 (333)
+|+|||+|.+.++|.+|+ .|||..|+|++|.|.||++++
T Consensus 247 ~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~~a~~k~ 292 (292)
T 2ghp_A 247 QKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVSLADKKP 292 (292)
T ss_dssp CC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEEECCCCC
T ss_pred CCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEEEecCCC
Confidence 579999999999999999 999999999999999999874
No 2
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=9.1e-45 Score=310.00 Aligned_cols=241 Identities=17% Similarity=0.281 Sum_probs=219.8
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeec
Q psy8956 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVE 111 (333)
Q Consensus 32 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~~~ 111 (333)
.++++|||+|||+++|+++|+++|+.|| |.++.+ +.++|||||+|.+.++|.+|++.|+|..+.|+.+.|.++.
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~-----~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~ 93 (284)
T 3smz_A 20 RNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV-----DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQP 93 (284)
T ss_dssp HCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE-----ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE-----ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecC
Confidence 4568899999999999999999999999 988887 3468999999999999999999999999999999999751
Q ss_pred cCCCCCCCCCCCCcccCCCCeEEEeCCCCCCCHHHHHHHhhccCceEEEEEEeCC-CCCceeEEEEEeCCHHHHHHHHHH
Q psy8956 112 LKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIE 190 (333)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~~~~~v~f~~~~~a~~a~~~ 190 (333)
...+|+|+|||..+++++|+++|+.||.|..+.+..+. +|.++|+|||+|.+.++|..|+..
T Consensus 94 -----------------~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 156 (284)
T 3smz_A 94 -----------------TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSD 156 (284)
T ss_dssp -----------------CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred -----------------CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHH
Confidence 34789999999999999999999999999999998876 788999999999999999999999
Q ss_pred hCCceeccceeEEEeeeecCCCccCCCCCCCCCCCCccceEEEecCCCCC-CHHHHHHHhhccCCeeEEEeecC-----C
Q psy8956 191 MNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNI-NNSEFEELFARFGTITSSSLVSD-----K 264 (333)
Q Consensus 191 l~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~-~~~~l~~~f~~~g~v~~v~i~~~-----~ 264 (333)
+++..+.|+.+.|.++...... ......++|+|+|||..+ ++++|+++|++||.|..+.+..+ +
T Consensus 157 l~~~~~~g~~i~v~~a~~~~~~----------~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~ 226 (284)
T 3smz_A 157 LLGKPLGPRTLYVHWTDAGQLT----------PALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLK 226 (284)
T ss_dssp HTTCEETTEECEEEECCGGGCC----------TTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEE
T ss_pred hCCCEeCCcEEEEEECCCCCCC----------cccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcc
Confidence 9999999999999998654331 123467899999999995 99999999999999999999886 7
Q ss_pred cEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEecCCCCCC
Q psy8956 265 HIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKPGV 305 (333)
Q Consensus 265 ~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~a~~~~~~ 305 (333)
|+|||+|.+.++|.+|+..|||..|+|++|.|.|++++..+
T Consensus 227 g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 267 (284)
T 3smz_A 227 GFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGPPG 267 (284)
T ss_dssp EEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCSSSCH
T ss_pred cEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecCCCcc
Confidence 89999999999999999999999999999999999887653
No 3
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.1e-32 Score=212.97 Aligned_cols=164 Identities=24% Similarity=0.403 Sum_probs=150.6
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeeccCC
Q psy8956 35 NELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKP 114 (333)
Q Consensus 35 ~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~~~~~~ 114 (333)
++|||+|||+++|+++|+++|+.||.|.++.+.++.++.++|+|||+|.+.++|.+|++.|+|..+.|+.+.|.++....
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 57999999999999999999999999999999999988899999999999999999999999999999999999884332
Q ss_pred CCCCCCCCCCcccCCCCeEEEeCCCCCCCHHHHHHHhhccCceEEEEEEeCC-CCCceeEEEEEeCCHHHHHHHHHHhCC
Q psy8956 115 GQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEMNG 193 (333)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~~~~~v~f~~~~~a~~a~~~l~~ 193 (333)
. .......+|+|+|||..+++++|+++|+.||.|..+.+..+. ++.++|+|||+|.+.++|.+|+..+++
T Consensus 81 ~---------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 151 (166)
T 3md3_A 81 Q---------SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQG 151 (166)
T ss_dssp C---------CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTT
T ss_pred C---------CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCC
Confidence 2 223456799999999999999999999999999999999884 788999999999999999999999999
Q ss_pred ceeccceeEEEeee
Q psy8956 194 RMIQHNSTFVSLAE 207 (333)
Q Consensus 194 ~~~~~~~i~v~~~~ 207 (333)
..+.|+.|.|.++.
T Consensus 152 ~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 152 QDLNGRPLRINWAA 165 (166)
T ss_dssp CEETTEECEEEESC
T ss_pred CccCCcEEEEEecC
Confidence 99999999999874
No 4
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=2e-32 Score=223.19 Aligned_cols=169 Identities=36% Similarity=0.583 Sum_probs=150.5
Q ss_pred ccccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEee
Q psy8956 31 VYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITF 109 (333)
Q Consensus 31 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~-~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~ 109 (333)
..+.++|||+|||+++|+++|+++|++||.|.+|+|+++. ++.++|||||+|.+.++|.+|++.+++..+.|+.+.+.+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 4566889999999999999999999999999999999988 899999999999999999999999999999999999987
Q ss_pred eccCCCCCCCCCCCCcccCCCCeEEEeCCCCCCCHHHHHHHhhccCceEEEEEEeCCCCCceeEEEEEeCCHHHHHHHHH
Q psy8956 110 VELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAII 189 (333)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~ 189 (333)
+.... ........+|||+|||..+++++|+++|+.||.|..+.+..+.. .++|+|||+|.+.++|.+|++
T Consensus 92 ~~~~~---------~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~-~~~g~~fV~f~~~~~a~~Ai~ 161 (213)
T 4f02_A 92 SQRDP---------SLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN-GSKGYGFVHFETQEAAERAIE 161 (213)
T ss_dssp CCCCT---------HHHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT-EEEEEEEEEESSHHHHHHHHH
T ss_pred ccccc---------cccccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCC-CCceEEEEEeCCHHHHHHHHH
Confidence 73211 12223456899999999999999999999999999999988753 468999999999999999999
Q ss_pred HhCCceeccceeEEEeeeec
Q psy8956 190 EMNGRMIQHNSTFVSLAEIV 209 (333)
Q Consensus 190 ~l~~~~~~~~~i~v~~~~~~ 209 (333)
.|++..+.|+.|.|.++...
T Consensus 162 ~lng~~~~g~~i~V~~a~~~ 181 (213)
T 4f02_A 162 KMNGMLLNDRKVFVGRFKSR 181 (213)
T ss_dssp HHTTCEETTEECEEEECCCH
T ss_pred HhCCCEECCEEEEEEEcCCC
Confidence 99999999999999998654
No 5
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=5.5e-32 Score=212.72 Aligned_cols=163 Identities=25% Similarity=0.477 Sum_probs=149.9
Q ss_pred ccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeec
Q psy8956 33 KENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVE 111 (333)
Q Consensus 33 ~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~-~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~~~ 111 (333)
++++|||+|||+++++++|+++|+.||.|.++.+.++. +|.++|||||+|.+.++|.+|++.|+|..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 45789999999999999999999999999999999987 88899999999999999999999999999999999999884
Q ss_pred cCCCCCCCCCCCCcccCCCCeEEEeCCCCCCCHHHHHHHhhccCceEEEEEEeCC-CCCceeEEEEEeCCHHHHHHHHHH
Q psy8956 112 LKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIE 190 (333)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~~~~~v~f~~~~~a~~a~~~ 190 (333)
... ......+|+|+|||..+++++|+++|+.||.|..+.+..+. ++.++|+|||+|.+.++|.+|+..
T Consensus 82 ~~~-----------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 150 (168)
T 1b7f_A 82 PGG-----------ESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISA 150 (168)
T ss_dssp CCS-----------STTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred CCc-----------ccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHH
Confidence 222 23456899999999999999999999999999999999887 788999999999999999999999
Q ss_pred hCCceecc--ceeEEEee
Q psy8956 191 MNGRMIQH--NSTFVSLA 206 (333)
Q Consensus 191 l~~~~~~~--~~i~v~~~ 206 (333)
+++..+.| +.|.|.++
T Consensus 151 l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 151 LNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp HTTCCCTTCSSCCEEEEC
T ss_pred hcCCEecCCCeEEEEEeC
Confidence 99999977 88888764
No 6
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=1.3e-31 Score=210.28 Aligned_cols=161 Identities=26% Similarity=0.486 Sum_probs=148.0
Q ss_pred cceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeecc
Q psy8956 34 ENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVEL 112 (333)
Q Consensus 34 ~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~-~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~~~~ 112 (333)
.++|||+|||+.+++++|+++|+.||.|.++.+.++. +|.++|+|||+|.+.++|.+|++.|+|..+.|+.+.|.++..
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 5789999999999999999999999999999999998 899999999999999999999999999999999999998832
Q ss_pred CCCCCCCCCCCCcccCCCCeEEEeCCCCCCCHHHHHHHhhccCceEEEEEEeCC-CCCceeEEEEEeCCHHHHHHHHHHh
Q psy8956 113 KPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEM 191 (333)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~~~~~v~f~~~~~a~~a~~~l 191 (333)
. .......+|+|+|||..+++++|+++|+.||.|..+.+..+. +|.++|+|||+|.+.++|.+|++.+
T Consensus 82 ~-----------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l 150 (167)
T 1fxl_A 82 S-----------SASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 150 (167)
T ss_dssp C-----------CGGGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHH
T ss_pred C-----------cccCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHh
Confidence 2 223456789999999999999999999999999999999876 7888999999999999999999999
Q ss_pred CCceeccce--eEEEe
Q psy8956 192 NGRMIQHNS--TFVSL 205 (333)
Q Consensus 192 ~~~~~~~~~--i~v~~ 205 (333)
+|..+.|+. +.|.+
T Consensus 151 ~g~~~~g~~~~i~v~~ 166 (167)
T 1fxl_A 151 NGQKPSGATEPITVKF 166 (167)
T ss_dssp TTCCCTTCSSCCEEEE
T ss_pred cCCccCCCccceEEEe
Confidence 999999976 66665
No 7
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=1e-32 Score=224.98 Aligned_cols=167 Identities=26% Similarity=0.443 Sum_probs=148.8
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHhhccCceEEEEEEeCC-CCCceeEEEEEeCCHHHHHHHHHHhCCceeccceeEEEe
Q psy8956 127 QYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL 205 (333)
Q Consensus 127 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~~~~~i~v~~ 205 (333)
..+.++|||+|||.++++++|+++|+.||.|.+|.+..+. +++++|+|||+|.+.++|.+|++.+++..+.|+.+.+.+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 3466899999999999999999999999999999999876 788999999999999999999999999999999999988
Q ss_pred eeecCCCccCCCCCCCCCCCCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC----CcEEEEEECCHHHHHHHH
Q psy8956 206 AEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAV 281 (333)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~----~~~~fV~f~~~~~A~~a~ 281 (333)
+...... ......+|||+|||..+++++|+++|++||.|..++++.+ +|+|||+|.+.++|.+|+
T Consensus 92 ~~~~~~~-----------~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai 160 (213)
T 4f02_A 92 SQRDPSL-----------RKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAI 160 (213)
T ss_dssp CCCCTHH-----------HHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHH
T ss_pred ccccccc-----------cccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHH
Confidence 7543221 1123468999999999999999999999999999999876 789999999999999999
Q ss_pred HHhCCCeeCCeeEEEEecCCCCC
Q psy8956 282 STMNGHVFKSKPLKVTLSGTKPG 304 (333)
Q Consensus 282 ~~l~g~~l~g~~l~v~~a~~~~~ 304 (333)
+.|||..|+|++|.|.+|+++..
T Consensus 161 ~~lng~~~~g~~i~V~~a~~~~~ 183 (213)
T 4f02_A 161 EKMNGMLLNDRKVFVGRFKSRKE 183 (213)
T ss_dssp HHHTTCEETTEECEEEECCCHHH
T ss_pred HHhCCCEECCEEEEEEEcCCCcc
Confidence 99999999999999999987643
No 8
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=7.2e-32 Score=220.89 Aligned_cols=182 Identities=20% Similarity=0.346 Sum_probs=153.9
Q ss_pred cccccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEe
Q psy8956 30 KVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIIT 108 (333)
Q Consensus 30 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~-~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~ 108 (333)
...+.++|||+|||+++|+++|+++|+.||.|.++.++++. ++.++|||||+|.+.++|.+|++.|++..+.|+.|.|.
T Consensus 24 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~ 103 (216)
T 2qfj_A 24 ALAIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVG 103 (216)
T ss_dssp HHHHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEE
T ss_pred ccCcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEe
Confidence 34567899999999999999999999999999999999988 88899999999999999999999999999999999998
Q ss_pred eeccCCCCCCCCCCCCcccCCCCeEEEeCCCCCCCHHHHHHHhhccCceEEEEEEeCC-CCCceeEEEEEeCCHHHHHHH
Q psy8956 109 FVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKA 187 (333)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~~~~~v~f~~~~~a~~a 187 (333)
++.....................+|+|+|||..+++++|+++|+.||.|..+.+..+. ++.++|+|||+|.+.++|.+|
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A 183 (216)
T 2qfj_A 104 RPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDA 183 (216)
T ss_dssp CCSCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHH
T ss_pred cCCCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHH
Confidence 6632211100000001123456899999999999999999999999999999999885 788999999999999999999
Q ss_pred HHHhCCceeccceeEEEeeeecCC
Q psy8956 188 IIEMNGRMIQHNSTFVSLAEIVPG 211 (333)
Q Consensus 188 ~~~l~~~~~~~~~i~v~~~~~~~~ 211 (333)
+..|++..+.|+.|.|.++.....
T Consensus 184 ~~~l~g~~~~g~~i~V~~a~~~~~ 207 (216)
T 2qfj_A 184 VSSMNLFDLGGQYLRVGKAVTPPM 207 (216)
T ss_dssp HHHHTTCBCSSSBCEEEECSSCSS
T ss_pred HHHccCCEeCCcEEEEEEecCCCC
Confidence 999999999999999999866543
No 9
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=6e-31 Score=212.08 Aligned_cols=175 Identities=23% Similarity=0.378 Sum_probs=149.2
Q ss_pred cccccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEe
Q psy8956 30 KVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIIT 108 (333)
Q Consensus 30 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~-~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~ 108 (333)
.+...++|||+|||+++|+++|+++|+.||.|.++.++++. ++.++|||||+|.+.++|.+|++. ++..+.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~ 87 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPK 87 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeee
Confidence 34677899999999999999999999999999999999998 788999999999999999999965 8999999999999
Q ss_pred eeccCCCCCCCCCCCCcccCCCCeEEEeCCCCCCCHHHHHHHhhccCceEEEEEEeCC-CCCceeEEEEEeCCHHHHHHH
Q psy8956 109 FVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKA 187 (333)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~~~~~v~f~~~~~a~~a 187 (333)
++....... .........+|+|+|||..+++++|+++|+.||.|..+.+..+. ++.++|+|||+|.+.++|.+|
T Consensus 88 ~~~~~~~~~-----~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A 162 (196)
T 1l3k_A 88 RAVSREDSQ-----RPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 162 (196)
T ss_dssp ECCC----------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHH
T ss_pred cccCccccc-----ccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHH
Confidence 874332211 12233456899999999999999999999999999999999886 788999999999999999999
Q ss_pred HHHhCCceeccceeEEEeeeecCC
Q psy8956 188 IIEMNGRMIQHNSTFVSLAEIVPG 211 (333)
Q Consensus 188 ~~~l~~~~~~~~~i~v~~~~~~~~ 211 (333)
+.. ++..+.|+.|.|.++.....
T Consensus 163 ~~~-~~~~~~G~~i~v~~a~~k~~ 185 (196)
T 1l3k_A 163 VIQ-KYHTVNGHNCEVRKALSKQE 185 (196)
T ss_dssp HHC-SCCEETTEECEEEECC----
T ss_pred HHh-CCcEECCEEEEEEecCChhH
Confidence 986 78999999999999876655
No 10
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.98 E-value=7.7e-31 Score=205.69 Aligned_cols=160 Identities=24% Similarity=0.445 Sum_probs=147.0
Q ss_pred CeEEEeCCCCCCCHHHHHHHhhccCceEEEEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeccceeEEEeeeecC
Q psy8956 131 DKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVP 210 (333)
Q Consensus 131 ~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~ 210 (333)
++|||+|||.++++++|+++|+.||.|.++.+..++.+.++|+|||+|.+.++|..|+..+++..+.|+.+.+.++....
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 47999999999999999999999999999999999888899999999999999999999999999999999999985543
Q ss_pred CCccCCCCCCCCCCCCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC------CcEEEEEECCHHHHHHHHHHh
Q psy8956 211 GKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTM 284 (333)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~------~~~~fV~f~~~~~A~~a~~~l 284 (333)
. ....+.++|+|+|||..+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|.+|++.|
T Consensus 81 ~-----------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 149 (166)
T 3md3_A 81 Q-----------SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSM 149 (166)
T ss_dssp C-----------CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHH
T ss_pred C-----------CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHh
Confidence 2 23345689999999999999999999999999999999866 679999999999999999999
Q ss_pred CCCeeCCeeEEEEecCC
Q psy8956 285 NGHVFKSKPLKVTLSGT 301 (333)
Q Consensus 285 ~g~~l~g~~l~v~~a~~ 301 (333)
||..++|++|+|.||+.
T Consensus 150 ~g~~~~g~~i~v~~a~~ 166 (166)
T 3md3_A 150 QGQDLNGRPLRINWAAK 166 (166)
T ss_dssp TTCEETTEECEEEESCC
T ss_pred CCCccCCcEEEEEecCC
Confidence 99999999999999974
No 11
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.98 E-value=1.3e-30 Score=206.30 Aligned_cols=164 Identities=21% Similarity=0.406 Sum_probs=145.5
Q ss_pred ccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCCCC---CcccEEEEEeCCHHHHHHHHHHhcCCccC---CeeeE
Q psy8956 33 KENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKND---ESRGFAIIVFNTPAEAKKARVEMNGHLIG---SKPVI 106 (333)
Q Consensus 33 ~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~~~---~~~g~a~v~f~~~e~A~~al~~l~~~~~~---g~~i~ 106 (333)
.+++|||+|||+++|+++|+++|++||.|.++.++++..+ .++|||||+|.+.++|.+|++.|++..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 4578999999999999999999999999999999999844 79999999999999999999999998765 56777
Q ss_pred EeeeccCCCCCCCCCCCCcccCCCCeEEEeCCCCCCCHHHHHHHhhccCceEEEEEEeCCCCCceeEEEEEeCCHHHHHH
Q psy8956 107 ITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEK 186 (333)
Q Consensus 107 v~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~v~f~~~~~a~~ 186 (333)
+.++..... ......+|+|+|||..+++++|+++|+.||.|..+.+..+.+|.++|+|||+|.+.++|.+
T Consensus 82 ~~~~~~~~~----------~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~ 151 (175)
T 3nmr_A 82 MKPADSEKN----------NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQT 151 (175)
T ss_dssp EEECGGGCC----------SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHH
T ss_pred Ecccccccc----------ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHH
Confidence 776632221 2235679999999999999999999999999999999999889999999999999999999
Q ss_pred HHHHhCCceec---cceeEEEee
Q psy8956 187 AIIEMNGRMIQ---HNSTFVSLA 206 (333)
Q Consensus 187 a~~~l~~~~~~---~~~i~v~~~ 206 (333)
|++.+++..+. ++.|.|.++
T Consensus 152 A~~~l~g~~~~~g~~~~l~V~~a 174 (175)
T 3nmr_A 152 AIKAMHQAQTMEGCSSPMVVKFA 174 (175)
T ss_dssp HHHHHTTSCCCTTCSSCCEEEEC
T ss_pred HHHHhcCCcccCCCCCCeEEEec
Confidence 99999998766 389999886
No 12
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.97 E-value=3.4e-30 Score=212.40 Aligned_cols=194 Identities=21% Similarity=0.310 Sum_probs=148.3
Q ss_pred ccccceEEEeCCCC-CCCHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEee
Q psy8956 31 VYKENELHVNNLEP-SVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITF 109 (333)
Q Consensus 31 ~~~~~~l~V~nLp~-~~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~ 109 (333)
..++++|||+|||+ .+++++|+++|+.||.|.++.+.++. +|||||+|.+.++|.+|++.|+|..+.|+.|.|.+
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 106 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITL 106 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEEC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 35668899999999 99999999999999999999999874 78999999999999999999999999999999998
Q ss_pred eccCCCCCCCCCCCCcccCCCCeEEEeCCCCCCCHHHHHHHhhccCceEEEEEEeCCCCCceeEEEEEeCCHHHHHHHHH
Q psy8956 110 VELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAII 189 (333)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~ 189 (333)
+........+.... . ... ...+.. ....+
T Consensus 107 a~~~~~~~~~~~~~---~-~~~-------------------~~~~~~--------~~~~~-------------------- 135 (229)
T 2adc_A 107 SKHQNVQLPREGQE---D-QGL-------------------TKDYGN--------SPLHR-------------------- 135 (229)
T ss_dssp CSCCCCCCCCSSSS---T-TTT-------------------EEECTT--------CSSCC--------------------
T ss_pred ecCccccCcccccc---c-ccc-------------------cccccc--------Ccccc--------------------
Confidence 84332211110000 0 000 000000 00000
Q ss_pred HhCCceeccceeEEEeeeecCCCccCCCCCCCCCCCCccceEEEecCCCCCCHHHHHHHhhccC-CeeEEEeec-CCcEE
Q psy8956 190 EMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFG-TITSSSLVS-DKHIG 267 (333)
Q Consensus 190 ~l~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g-~v~~v~i~~-~~~~~ 267 (333)
...+..........++++|+|+|||..+++++|+++|++|| .|..+++.. ++++|
T Consensus 136 -----------------------~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~g~a 192 (229)
T 2adc_A 136 -----------------------FKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMA 192 (229)
T ss_dssp -----------------------CCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSSTTCE
T ss_pred -----------------------cCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECCCcEE
Confidence 00000000011234578999999999999999999999999 999999955 69999
Q ss_pred EEEECCHHHHHHHHHHhCCCeeC-CeeEEEEecCCC
Q psy8956 268 FIEFIMPKHATHAVSTMNGHVFK-SKPLKVTLSGTK 302 (333)
Q Consensus 268 fV~f~~~~~A~~a~~~l~g~~l~-g~~l~v~~a~~~ 302 (333)
||+|.+.++|.+|++.|||..++ |++|+|.|++++
T Consensus 193 fV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 193 LIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp EEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred EEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 99999999999999999999999 999999999874
No 13
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.97 E-value=6e-30 Score=218.18 Aligned_cols=184 Identities=17% Similarity=0.280 Sum_probs=165.7
Q ss_pred CCCCceeeccCCCCCCCCccccCcCCcCcccccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCC-CCCcccEEEE
Q psy8956 2 KSKGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAII 80 (333)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~-~~~~~g~a~v 80 (333)
.+.|+.+++.|+.. .++|||+|||+.+|+++|+++|+.||.|.++.++.+. +|.++|+|||
T Consensus 81 ~~~g~~i~v~~~~~------------------~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV 142 (284)
T 3smz_A 81 RLRERELSVQLQPT------------------DALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFA 142 (284)
T ss_dssp EETTEECEEEECCC------------------SCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEE
T ss_pred eeCCeEEEEEecCC------------------CCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEE
Confidence 46788999988643 2579999999999999999999999999999999987 8999999999
Q ss_pred EeCCHHHHHHHHHHhcCCccCCeeeEEeeeccCCCCCCCCCCCCcccCCCCeEEEeCCCCCC-CHHHHHHHhhccCceEE
Q psy8956 81 VFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETV-DEEELKSHFIKFGNIIE 159 (333)
Q Consensus 81 ~f~~~e~A~~al~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~-~~~~l~~~f~~~g~v~~ 159 (333)
+|.+.++|.+|+..|+|..+.|+.|.|.++...... .......+|+|+|||..+ ++++|+++|+.||.|..
T Consensus 143 ~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~~~--------~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~ 214 (284)
T 3smz_A 143 EYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQLT--------PALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTF 214 (284)
T ss_dssp EESSHHHHHHHHHHHTTCEETTEECEEEECCGGGCC--------TTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSE
T ss_pred EECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCCC--------cccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEE
Confidence 999999999999999999999999999988544322 223467899999999995 99999999999999999
Q ss_pred EEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeccceeEEEeeeecCC
Q psy8956 160 VKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPG 211 (333)
Q Consensus 160 ~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~ 211 (333)
+.+..+.+|.++|+|||+|.+.++|.+|+..++|..+.|+.|.|.++.....
T Consensus 215 v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 266 (284)
T 3smz_A 215 CQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGPP 266 (284)
T ss_dssp EEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCSSSC
T ss_pred EEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecCCCc
Confidence 9999998999999999999999999999999999999999999999866544
No 14
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.97 E-value=3.8e-31 Score=207.71 Aligned_cols=163 Identities=23% Similarity=0.414 Sum_probs=147.1
Q ss_pred ccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeec
Q psy8956 33 KENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVE 111 (333)
Q Consensus 33 ~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~-~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~~~ 111 (333)
++++|||+|||+++|+++|+++|+.||.|.++.++++. +|.++|||||+|.+.++|.+|++ ++..+.|+.+.+.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK--TQHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH--SCCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh--cccccCCeEccccccc
Confidence 56889999999999999999999999999999999997 89999999999999999999997 4678999999998763
Q ss_pred cCCCCCCCCCCCCcccCCCCeEEEeCCCCCCCHHHHHHHhhccCceEEEEEEeCC-CCCceeEEEEEeCCHHHHHHHHHH
Q psy8956 112 LKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIE 190 (333)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~~~~~v~f~~~~~a~~a~~~ 190 (333)
. ........+|+|+|||..+++++|+++|+.||.|..+.+..+. ++.++|+|||+|.+.++|.+|++
T Consensus 80 ~-----------~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~- 147 (167)
T 2cjk_A 80 P-----------RDEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ- 147 (167)
T ss_dssp C-----------HHHHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-
T ss_pred c-----------hhhccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-
Confidence 2 2223356789999999999999999999999999999998885 78899999999999999999998
Q ss_pred hCCceeccceeEEEeeeec
Q psy8956 191 MNGRMIQHNSTFVSLAEIV 209 (333)
Q Consensus 191 l~~~~~~~~~i~v~~~~~~ 209 (333)
+++..+.|+.|.|.++.++
T Consensus 148 ~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 148 NKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp CSEECSSSSCEEEEECCCC
T ss_pred CCCEEeCCeEEEEeecCCC
Confidence 8999999999999998653
No 15
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.97 E-value=1.4e-29 Score=198.73 Aligned_cols=157 Identities=32% Similarity=0.573 Sum_probs=144.3
Q ss_pred CCeEEEeCCCCCCCHHHHHHHhhccCceEEEEEEeCC-CCCceeEEEEEeCCHHHHHHHHHHhCCceeccceeEEEeeee
Q psy8956 130 KDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEI 208 (333)
Q Consensus 130 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~ 208 (333)
.++|+|+|||..+++++|+++|+.||.|..+.+..+. ++.++|+|||+|.+.++|..|++.+++..+.|+.+.|.++..
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 5789999999999999999999999999999999987 888999999999999999999999999999999999998854
Q ss_pred cCCCccCCCCCCCCCCCCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC------CcEEEEEECCHHHHHHHHH
Q psy8956 209 VPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVS 282 (333)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~------~~~~fV~f~~~~~A~~a~~ 282 (333)
.. .....++|+|+|||..+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|.+|++
T Consensus 82 ~~-------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~ 148 (167)
T 1fxl_A 82 SS-------------ASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 148 (167)
T ss_dssp CC-------------GGGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred Cc-------------ccCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHH
Confidence 32 2235578999999999999999999999999999998876 5899999999999999999
Q ss_pred HhCCCeeCCee--EEEEec
Q psy8956 283 TMNGHVFKSKP--LKVTLS 299 (333)
Q Consensus 283 ~l~g~~l~g~~--l~v~~a 299 (333)
.|||..++|+. |.|.||
T Consensus 149 ~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 149 GLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp HHTTCCCTTCSSCCEEEEC
T ss_pred HhcCCccCCCccceEEEeC
Confidence 99999999965 888886
No 16
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.97 E-value=1.1e-29 Score=199.58 Aligned_cols=158 Identities=26% Similarity=0.506 Sum_probs=145.6
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHhhccCceEEEEEEeCC-CCCceeEEEEEeCCHHHHHHHHHHhCCceeccceeEEEeee
Q psy8956 129 KKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207 (333)
Q Consensus 129 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~ 207 (333)
+.++|+|+|||.++++++|+++|+.||.|..+.+..+. ++.++|+|||+|.+.++|..|++.+++..+.|+.+.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 46899999999999999999999999999999998875 78899999999999999999999999999999999999985
Q ss_pred ecCCCccCCCCCCCCCCCCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC------CcEEEEEECCHHHHHHHH
Q psy8956 208 IVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAV 281 (333)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~------~~~~fV~f~~~~~A~~a~ 281 (333)
.... ....++|+|+|||..+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|.+|+
T Consensus 82 ~~~~-------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~ 148 (168)
T 1b7f_A 82 PGGE-------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAI 148 (168)
T ss_dssp CCSS-------------TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHH
T ss_pred CCcc-------------cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHH
Confidence 4322 245689999999999999999999999999999999876 479999999999999999
Q ss_pred HHhCCCeeCC--eeEEEEec
Q psy8956 282 STMNGHVFKS--KPLKVTLS 299 (333)
Q Consensus 282 ~~l~g~~l~g--~~l~v~~a 299 (333)
+.|||..++| ++|+|.||
T Consensus 149 ~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 149 SALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp HHHTTCCCTTCSSCCEEEEC
T ss_pred HHhcCCEecCCCeEEEEEeC
Confidence 9999999988 99999986
No 17
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.97 E-value=1.3e-29 Score=207.43 Aligned_cols=176 Identities=26% Similarity=0.400 Sum_probs=148.9
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHhhccCceEEEEEEeCC-CCCceeEEEEEeCCHHHHHHHHHHhCCceeccceeEEEeee
Q psy8956 129 KKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207 (333)
Q Consensus 129 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~ 207 (333)
..++|||+|||.++++++|+++|+.||.|..+.+..+. ++.++|+|||+|.+.++|.+|+..+++..+.|+.+.|.+..
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 46789999999999999999999999999999998876 78889999999999999999999999999999999998765
Q ss_pred ecCCCccCCCCCCCCCCCCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC------CcEEEEEECCHHHHHHHH
Q psy8956 208 IVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAV 281 (333)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~------~~~~fV~f~~~~~A~~a~ 281 (333)
........ ...........++|||+|||..+++++|+++|++||.|..+.+..+ +++|||+|.+.++|.+|+
T Consensus 107 ~~~~~~~~--~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~ 184 (216)
T 2qfj_A 107 NIGQAQPI--IDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAV 184 (216)
T ss_dssp CCGGGHHH--HHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHH
T ss_pred Cccccchh--hhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHH
Confidence 43221000 0000012235589999999999999999999999999999999876 689999999999999999
Q ss_pred HHhCCCeeCCeeEEEEecCCCCCCC
Q psy8956 282 STMNGHVFKSKPLKVTLSGTKPGVS 306 (333)
Q Consensus 282 ~~l~g~~l~g~~l~v~~a~~~~~~~ 306 (333)
+.|||..|+|+.|+|.++..++...
T Consensus 185 ~~l~g~~~~g~~i~V~~a~~~~~~~ 209 (216)
T 2qfj_A 185 SSMNLFDLGGQYLRVGKAVTPPMPL 209 (216)
T ss_dssp HHHTTCBCSSSBCEEEECSSCSSTT
T ss_pred HHccCCEeCCcEEEEEEecCCCCCC
Confidence 9999999999999999999875443
No 18
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.97 E-value=6.6e-30 Score=206.27 Aligned_cols=191 Identities=21% Similarity=0.332 Sum_probs=146.8
Q ss_pred cceEEEeCCCC-CCCHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeecc
Q psy8956 34 ENELHVNNLEP-SVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVEL 112 (333)
Q Consensus 34 ~~~l~V~nLp~-~~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~~~~ 112 (333)
+++|||+|||+ .+++++|+++|+.||.|.++.+.++. +|||||+|.+.++|.+|++.|+|..+.|+.|.|.++..
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~ 78 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKH 78 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecC
Confidence 57899999999 99999999999999999999998874 78999999999999999999999999999999998843
Q ss_pred CCCCCCCCCCCCcccCCCCeEEEeCCCCCCCHHHHHHHhhccCceEEEEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhC
Q psy8956 113 KPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMN 192 (333)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~ 192 (333)
............ .... ..++ .... +
T Consensus 79 ~~~~~~~~~~~~----~~~~-------------------~~~~--------~~~~------------------------~ 103 (198)
T 1qm9_A 79 QNVQLPREGQED----QGLT-------------------KDYG--------NSPL------------------------H 103 (198)
T ss_dssp CSCCCSSSSSSS----SSCE-------------------EESS--------CCCT------------------------T
T ss_pred CCcCCCCcCCcc----cccc-------------------cccc--------CCch------------------------h
Confidence 322111100000 0000 0000 0000 0
Q ss_pred CceeccceeEEEeeeecCCCccCCCCCCCCCCCCccceEEEecCCCCCCHHHHHHHhhccC-CeeEEEeec-CCcEEEEE
Q psy8956 193 GRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFG-TITSSSLVS-DKHIGFIE 270 (333)
Q Consensus 193 ~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g-~v~~v~i~~-~~~~~fV~ 270 (333)
....+..........++++|+|+|||..+++++|+++|++|| .|..+++.. ++|+|||+
T Consensus 104 -------------------r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~~g~afV~ 164 (198)
T 1qm9_A 104 -------------------RFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQ 164 (198)
T ss_dssp -------------------SSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTTSSCEEEE
T ss_pred -------------------hccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCCCcEEEEE
Confidence 000000011111234678999999999999999999999999 999999965 58999999
Q ss_pred ECCHHHHHHHHHHhCCCeeC-CeeEEEEecCCC
Q psy8956 271 FIMPKHATHAVSTMNGHVFK-SKPLKVTLSGTK 302 (333)
Q Consensus 271 f~~~~~A~~a~~~l~g~~l~-g~~l~v~~a~~~ 302 (333)
|.+.++|.+|++.|||..++ |++|+|.|++++
T Consensus 165 f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 165 MGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp CSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred eCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 99999999999999999999 999999999864
No 19
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.97 E-value=1.4e-29 Score=204.11 Aligned_cols=172 Identities=19% Similarity=0.336 Sum_probs=144.2
Q ss_pred ccCCCCeEEEeCCCCCCCHHHHHHHhhccCceEEEEEEeCC-CCCceeEEEEEeCCHHHHHHHHHHhCCceeccceeEEE
Q psy8956 126 KQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVS 204 (333)
Q Consensus 126 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~~~~~i~v~ 204 (333)
.....++|||+|||.++++++|+++|+.||.|..+.+..+. ++.++|+|||+|.+.++|..|+.. ++..+.|+.+.+.
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~ 87 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPK 87 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeee
Confidence 34467899999999999999999999999999999999886 688999999999999999999976 8899999999999
Q ss_pred eeeecCCCccCCCCCCCCCCCCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC------CcEEEEEECCHHHHH
Q psy8956 205 LAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHAT 278 (333)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~------~~~~fV~f~~~~~A~ 278 (333)
++........ .......++|||+|||..+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|.
T Consensus 88 ~~~~~~~~~~-------~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~ 160 (196)
T 1l3k_A 88 RAVSREDSQR-------PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVD 160 (196)
T ss_dssp ECCC------------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHH
T ss_pred cccCcccccc-------cccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHH
Confidence 9765433211 112345689999999999999999999999999999999876 679999999999999
Q ss_pred HHHHHhCCCeeCCeeEEEEecCCCCCCC
Q psy8956 279 HAVSTMNGHVFKSKPLKVTLSGTKPGVS 306 (333)
Q Consensus 279 ~a~~~l~g~~l~g~~l~v~~a~~~~~~~ 306 (333)
+|++. +|..|+|+.|.|.+|.++....
T Consensus 161 ~A~~~-~~~~~~G~~i~v~~a~~k~~~~ 187 (196)
T 1l3k_A 161 KIVIQ-KYHTVNGHNCEVRKALSKQEMA 187 (196)
T ss_dssp HHHHC-SCCEETTEECEEEECC------
T ss_pred HHHHh-CCcEECCEEEEEEecCChhHhc
Confidence 99986 8999999999999999887654
No 20
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.97 E-value=1.7e-29 Score=199.29 Aligned_cols=158 Identities=21% Similarity=0.401 Sum_probs=142.4
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhcC----C-------CeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCcc
Q psy8956 32 YKENELHVNNLEPSVDNQALINEFKKF----G-------TLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLI 100 (333)
Q Consensus 32 ~~~~~l~V~nLp~~~t~~~l~~~f~~~----g-------~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~ 100 (333)
.+.++|||+|||+++|+++|+++|++| | .|.++.+.+ ++|||||+|.+.++|.+|+ .++|..+
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~-----~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ-----DKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET-----TTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC-----CCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 356899999999999999999999999 6 777776654 5899999999999999999 8999999
Q ss_pred CCeeeEEeeeccCCCCCCCCCCCCcccCCCCeEEEeCCCCCCCHHHHHHHhhccCceEEEEEEeCC-CCCceeEEEEEeC
Q psy8956 101 GSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFF 179 (333)
Q Consensus 101 ~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~~~~~v~f~ 179 (333)
.|+.+.|.++... .......+|+|+|||..+++++|+++|+.||.|..+.+..++ ++.++|+|||+|.
T Consensus 76 ~g~~i~v~~~~~~-----------~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~ 144 (172)
T 2g4b_A 76 QGQSLKIRRPHDY-----------QPLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYV 144 (172)
T ss_dssp TTEECEEECCSSC-----------CCCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEES
T ss_pred cCceeeecCCccc-----------CCCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeC
Confidence 9999999976221 122347899999999999999999999999999999999986 8899999999999
Q ss_pred CHHHHHHHHHHhCCceeccceeEEEee
Q psy8956 180 SYKAAEKAIIEMNGRMIQHNSTFVSLA 206 (333)
Q Consensus 180 ~~~~a~~a~~~l~~~~~~~~~i~v~~~ 206 (333)
+.++|.+|+..+++..+.|+.+.|.++
T Consensus 145 ~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 145 DINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp STTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 999999999999999999999999986
No 21
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.97 E-value=5.6e-30 Score=219.27 Aligned_cols=184 Identities=20% Similarity=0.301 Sum_probs=153.9
Q ss_pred CCCCceeeccCCCCCCCCccccCcCCcCcccccceEEEeCCCCCCCHHHHHHHHhcCC-CeeEEEEeeCCCCCcccEEEE
Q psy8956 2 KSKGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFG-TLRDVRVARNKNDESRGFAII 80 (333)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g-~v~~v~i~~~~~~~~~g~a~v 80 (333)
.+.|+.+++.|+. .++|||+|||+.+++++|+++|..|| .|.++.+..+..+.++|||||
T Consensus 104 ~~~g~~i~v~~~~-------------------~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV 164 (292)
T 2ghp_A 104 VVGQNEIIVSHLT-------------------ECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYI 164 (292)
T ss_dssp EETTEECEEEECC-------------------SCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEE
T ss_pred EeCCcEEEEEECC-------------------CCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEE
Confidence 3577888888763 47899999999999999999999999 999999999888889999999
Q ss_pred EeCCHHHHHHHHHHhcCCccCCeeeEEeeeccCCCCCCCCCCCCcccCCCCeEEEeCCCCC-CCHHHHHHHhhccCceEE
Q psy8956 81 VFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVET-VDEEELKSHFIKFGNIIE 159 (333)
Q Consensus 81 ~f~~~e~A~~al~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~-~~~~~l~~~f~~~g~v~~ 159 (333)
+|.+.++|.+|+..|+|..+.|+.|.|.++........ .........+|+|+|||.. +++++|+++|+.||.|..
T Consensus 165 ~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~----~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~ 240 (292)
T 2ghp_A 165 DVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLEKSKR----TDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEK 240 (292)
T ss_dssp ECSSHHHHHHHHHHHTTCEETTEECEEEECCCC-------------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEE
T ss_pred EECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCccccc----ccccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeE
Confidence 99999999999999999999999999998843322111 1123456789999999999 999999999999999999
Q ss_pred EEEEeCCC--CCceeEEEEEeCCHHHHHHHHHHhCCceeccceeEEEeeeec
Q psy8956 160 VKIVRDEN--GKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIV 209 (333)
Q Consensus 160 ~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~ 209 (333)
+.+..+.. +.++|+|||+|.+.++|.+|+ .+++..+.|+.|.|.++..+
T Consensus 241 v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 241 INIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp EECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEEECCCC
T ss_pred EEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEEEecCC
Confidence 99998876 889999999999999999999 99999999999999998654
No 22
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.97 E-value=2e-29 Score=203.14 Aligned_cols=169 Identities=14% Similarity=0.173 Sum_probs=139.9
Q ss_pred ccceEEEeCCC-CCCCHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeec
Q psy8956 33 KENELHVNNLE-PSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVE 111 (333)
Q Consensus 33 ~~~~l~V~nLp-~~~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~~~ 111 (333)
++++|||+||| ..+|+++|+++|+.||.|.+++++++ ++|||||+|.+.++|.+|++.|||..+.|+.|.|.++.
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~ 78 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSK 78 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcc
Confidence 35789999999 79999999999999999999999875 48999999999999999999999999999999999885
Q ss_pred cCCCCCCC----CC----------------C------CCcccCCCCeEEEeCCCCCCCHHHHHHHhhccCce--EEEEEE
Q psy8956 112 LKPGQRSK----PV----------------G------PEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNI--IEVKIV 163 (333)
Q Consensus 112 ~~~~~~~~----~~----------------~------~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v--~~~~~~ 163 (333)
........ .. . ......+..+|+|+|||..+++++|+++|+.||.| .++.+.
T Consensus 79 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~ 158 (205)
T 3tyt_A 79 QPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVF 158 (205)
T ss_dssp CSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEEC
T ss_pred CCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEE
Confidence 33211000 00 0 00012345789999999999999999999999998 888888
Q ss_pred eCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeccc----eeEEEee
Q psy8956 164 RDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHN----STFVSLA 206 (333)
Q Consensus 164 ~~~~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~~~~----~i~v~~~ 206 (333)
.+. +..+|+|||+|.+.++|.+|+..|++..+.|. ++.|+++
T Consensus 159 ~~~-~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 159 SGK-SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp SCC-SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred cCC-CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 765 44569999999999999999999999998876 4555553
No 23
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.97 E-value=5.6e-29 Score=196.80 Aligned_cols=160 Identities=23% Similarity=0.430 Sum_probs=141.2
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHhhccCceEEEEEEeCCCC---CceeEEEEEeCCHHHHHHHHHHhCCceec---cceeE
Q psy8956 129 KKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENG---KSKGFGFIQFFSYKAAEKAIIEMNGRMIQ---HNSTF 202 (333)
Q Consensus 129 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~---~~~~~~~v~f~~~~~a~~a~~~l~~~~~~---~~~i~ 202 (333)
..++|||+|||..+++++|+++|+.||.|..+.+..+..+ .++|+|||+|.+.++|..|++.+++..+. +..+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 4679999999999999999999999999999999988744 78999999999999999999999998765 56666
Q ss_pred EEeeeecCCCccCCCCCCCCCCCCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC-----CcEEEEEECCHHHH
Q psy8956 203 VSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHA 277 (333)
Q Consensus 203 v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~-----~~~~fV~f~~~~~A 277 (333)
+........ .....++|+|+|||..+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|
T Consensus 82 ~~~~~~~~~------------~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A 149 (175)
T 3nmr_A 82 MKPADSEKN------------NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMA 149 (175)
T ss_dssp EEECGGGCC------------SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHH
T ss_pred Ecccccccc------------ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHH
Confidence 666543322 2346689999999999999999999999999999999887 77999999999999
Q ss_pred HHHHHHhCCCeeC---CeeEEEEecC
Q psy8956 278 THAVSTMNGHVFK---SKPLKVTLSG 300 (333)
Q Consensus 278 ~~a~~~l~g~~l~---g~~l~v~~a~ 300 (333)
.+|++.|||..+. |++|.|.||.
T Consensus 150 ~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 150 QTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp HHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred HHHHHHhcCCcccCCCCCCeEEEecC
Confidence 9999999998776 4999999983
No 24
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.97 E-value=3.4e-30 Score=203.81 Aligned_cols=166 Identities=24% Similarity=0.289 Sum_probs=143.3
Q ss_pred cccccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEee
Q psy8956 30 KVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITF 109 (333)
Q Consensus 30 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~ 109 (333)
.+...++|||+|||+.+|+++|+++|..||.+..+.+....++.++|||||+|.+.++|.+|+ .|+|..+.|+.|.|.+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~~ 87 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLEK 87 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEec
Confidence 345678899999999999999999999999776533344447789999999999999999999 5999999999999998
Q ss_pred eccCCCCCCCCCCCCcccCCCCeEEEeCCCCCCCHHHHHHHhhccCceEEEEEEeCCCCCceeEEEEEeCCHHHHHHHHH
Q psy8956 110 VELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAII 189 (333)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~ 189 (333)
+..... .......+|+|+|||..+++++|+++|+.||.|..+ ..++.++|+|||+|.+.++|.+|+.
T Consensus 88 ~~~~~~---------~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~A~~A~~ 154 (175)
T 1fje_B 88 PKGRDS---------KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLE 154 (175)
T ss_dssp CCCSSC---------STTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE----CSSSSCCSEEEEECSSHHHHHHHHH
T ss_pred CCCccc---------cccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe----cCCCCCceEEEEEECCHHHHHHHHH
Confidence 843321 223356899999999999999999999999988766 5567889999999999999999999
Q ss_pred HhCCceeccceeEEEeeeec
Q psy8956 190 EMNGRMIQHNSTFVSLAEIV 209 (333)
Q Consensus 190 ~l~~~~~~~~~i~v~~~~~~ 209 (333)
.+++..+.|+.|.|.++.++
T Consensus 155 ~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 155 EKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp HHTEEEETTEEEEEEECSSC
T ss_pred HhCCCEECCeEEEEEecCCC
Confidence 99999999999999998543
No 25
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.96 E-value=2.5e-28 Score=207.94 Aligned_cols=173 Identities=23% Similarity=0.395 Sum_probs=148.0
Q ss_pred cCCCCeEEEeCCCCCCCHHHHH----HHhhccCceEEEEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeccceeE
Q psy8956 127 QYKKDKVFVKNLVETVDEEELK----SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTF 202 (333)
Q Consensus 127 ~~~~~~l~v~~l~~~~~~~~l~----~~f~~~g~v~~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~~~~~i~ 202 (333)
..+.++|||+|||..+++++|+ ++|+.||.|..|.+.. ++.++|+|||+|.+.++|.+|++.+++..+.|+.|.
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 83 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 83 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC--CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEE
Confidence 4568899999999999999966 8999999999998886 567899999999999999999999999999999999
Q ss_pred EEeeeecCCCcc---CC--------------------------------------CC-----------------------
Q psy8956 203 VSLAEIVPGKKV---FP--------------------------------------KV----------------------- 218 (333)
Q Consensus 203 v~~~~~~~~~~~---~~--------------------------------------~~----------------------- 218 (333)
|.++........ .. ..
T Consensus 84 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 163 (282)
T 3pgw_A 84 IQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPY 163 (282)
T ss_pred EEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCC
Confidence 999865442000 00 00
Q ss_pred ----------------------------------CCCCCCCCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecCC
Q psy8956 219 ----------------------------------KPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDK 264 (333)
Q Consensus 219 ----------------------------------~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~~ 264 (333)
........++++|||+|||..+++++|+++|++||.|..+++..++
T Consensus 164 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~ 243 (282)
T 3pgw_A 164 MPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR 243 (282)
T ss_pred CCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC
Confidence 0001233456889999999999999999999999999999999885
Q ss_pred -cEEEEEECCHHHHHHHHHHhCCCeeC-CeeEEEEecCC
Q psy8956 265 -HIGFIEFIMPKHATHAVSTMNGHVFK-SKPLKVTLSGT 301 (333)
Q Consensus 265 -~~~fV~f~~~~~A~~a~~~l~g~~l~-g~~l~v~~a~~ 301 (333)
|+|||+|.+.++|.+|++.|||..|+ |+.|+|.||+.
T Consensus 244 ~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~akk 282 (282)
T 3pgw_A 244 HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 282 (282)
T ss_pred CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEecC
Confidence 99999999999999999999999999 99999999973
No 26
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.96 E-value=1.6e-28 Score=198.11 Aligned_cols=172 Identities=20% Similarity=0.359 Sum_probs=145.5
Q ss_pred ccceEEEeCCCCCCCHHHHHHHHhcC----C-------CeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccC
Q psy8956 33 KENELHVNNLEPSVDNQALINEFKKF----G-------TLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIG 101 (333)
Q Consensus 33 ~~~~l~V~nLp~~~t~~~l~~~f~~~----g-------~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~ 101 (333)
..++|||+|||+++|+++|+++|+.| | .|.++.+. .++|||||+|.+.++|.+|+ .|+|..+.
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~-----~~~g~afV~F~~~~~A~~Al-~l~g~~~~ 76 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN-----QDKNFAFLEFRSVDETTQAM-AFDGIIFQ 76 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE-----TTTTEEEEEESCSHHHHHHG-GGTTEEET
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec-----CCCCEEEEEeCCHHHHHHHH-HhcCCEEc
Confidence 45889999999999999999999999 5 56666554 46899999999999999999 89999999
Q ss_pred CeeeEEeeeccCCCCCCC---------CCCCCcccCCCCeEEEeCCCCCCCHHHHHHHhhccCceEEEEEEeCC-CCCce
Q psy8956 102 SKPVIITFVELKPGQRSK---------PVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSK 171 (333)
Q Consensus 102 g~~i~v~~~~~~~~~~~~---------~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~ 171 (333)
|+.|.|.++......... ............+|+|+|||..+++++|+++|+.||.|..+.+..+. ++.++
T Consensus 77 g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~ 156 (198)
T 2yh0_A 77 GQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSK 156 (198)
T ss_dssp TEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEE
T ss_pred CceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcc
Confidence 999999977433221110 00111223567899999999999999999999999999999999986 88899
Q ss_pred eEEEEEeCCHHHHHHHHHHhCCceeccceeEEEeeeecC
Q psy8956 172 GFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVP 210 (333)
Q Consensus 172 ~~~~v~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~ 210 (333)
|+|||+|.+.++|.+|+..+++..+.|+.+.|.++....
T Consensus 157 g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 195 (198)
T 2yh0_A 157 GYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGA 195 (198)
T ss_dssp EEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred eEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence 999999999999999999999999999999999986543
No 27
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.96 E-value=1.5e-28 Score=198.04 Aligned_cols=167 Identities=17% Similarity=0.233 Sum_probs=139.9
Q ss_pred CCCeEEEeCCC-CCCCHHHHHHHhhccCceEEEEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeccceeEEEeee
Q psy8956 129 KKDKVFVKNLV-ETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207 (333)
Q Consensus 129 ~~~~l~v~~l~-~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~ 207 (333)
+..+|||+||| ..+++++|+++|+.||.|.++.++.+ .+|+|||+|.+.++|..|++.|+|..+.|+.|.|.++.
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~ 78 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSK 78 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcc
Confidence 56799999999 89999999999999999999999875 36899999999999999999999999999999999986
Q ss_pred ecCCCccC----CCC---------C-----------CCCCCCCccceEEEecCCCCCCHHHHHHHhhccCCe--eEEEee
Q psy8956 208 IVPGKKVF----PKV---------K-----------PPLLQPARKNKIFVANLPSNINNSEFEELFARFGTI--TSSSLV 261 (333)
Q Consensus 208 ~~~~~~~~----~~~---------~-----------~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v--~~v~i~ 261 (333)
........ ... . .......++++|||+|||..+++++|+++|++||.| ..+++.
T Consensus 79 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~ 158 (205)
T 3tyt_A 79 QPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVF 158 (205)
T ss_dssp CSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEEC
T ss_pred CCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEE
Confidence 43221100 000 0 000112457899999999999999999999999999 899988
Q ss_pred cC----CcEEEEEECCHHHHHHHHHHhCCCeeCCe----eEEEEec
Q psy8956 262 SD----KHIGFIEFIMPKHATHAVSTMNGHVFKSK----PLKVTLS 299 (333)
Q Consensus 262 ~~----~~~~fV~f~~~~~A~~a~~~l~g~~l~g~----~l~v~~a 299 (333)
.+ +++|||+|.+.++|.+|+..|||..|+|+ ++.|.+|
T Consensus 159 ~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 159 SGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp SCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred cCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 76 58999999999999999999999999886 5777664
No 28
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.96 E-value=1.7e-29 Score=198.25 Aligned_cols=159 Identities=23% Similarity=0.453 Sum_probs=142.6
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHhhccCceEEEEEEeCC-CCCceeEEEEEeCCHHHHHHHHHHhCCceeccceeEEEeee
Q psy8956 129 KKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207 (333)
Q Consensus 129 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~ 207 (333)
++++|||+|||.++++++|+++|+.||.|..+.+..+. +|.++|+|||+|.+.++|..|+.. +..+.|+.+.+.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 46799999999999999999999999999999999885 788999999999999999999984 667899999888764
Q ss_pred ecCCCccCCCCCCCCCCCCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC------CcEEEEEECCHHHHHHHH
Q psy8956 208 IVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAV 281 (333)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~------~~~~fV~f~~~~~A~~a~ 281 (333)
... ...+.++|+|+|||..+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|.+|+
T Consensus 80 ~~~-------------~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~ 146 (167)
T 2cjk_A 80 PRD-------------EQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVC 146 (167)
T ss_dssp CHH-------------HHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHH
T ss_pred chh-------------hccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHH
Confidence 322 1234578999999999999999999999999999999876 579999999999999999
Q ss_pred HHhCCCeeCCeeEEEEecCCCC
Q psy8956 282 STMNGHVFKSKPLKVTLSGTKP 303 (333)
Q Consensus 282 ~~l~g~~l~g~~l~v~~a~~~~ 303 (333)
+ ++|..++|++|+|.+|.++.
T Consensus 147 ~-~~~~~~~g~~i~V~~a~pk~ 167 (167)
T 2cjk_A 147 Q-NKFIDFKDRKIEIKRAEPRH 167 (167)
T ss_dssp H-CSEECSSSSCEEEEECCCCC
T ss_pred h-CCCEEeCCeEEEEeecCCCC
Confidence 8 89999999999999998763
No 29
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.96 E-value=2.7e-28 Score=207.72 Aligned_cols=170 Identities=25% Similarity=0.366 Sum_probs=145.3
Q ss_pred cccceEEEeCCCCCCCHHHHH----HHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEE
Q psy8956 32 YKENELHVNNLEPSVDNQALI----NEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVII 107 (333)
Q Consensus 32 ~~~~~l~V~nLp~~~t~~~l~----~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v 107 (333)
.++++|||+|||+++|+++|+ ++|+.||.|.+|.+.+ ++.++|||||+|.+.++|.+|++.|+|..+.|+.|.|
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 84 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 84 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC--CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEE
Confidence 457889999999999999976 8999999999998886 6778999999999999999999999999999999999
Q ss_pred eeeccCCCCCCCCC------------------------------------------------------------------
Q psy8956 108 TFVELKPGQRSKPV------------------------------------------------------------------ 121 (333)
Q Consensus 108 ~~~~~~~~~~~~~~------------------------------------------------------------------ 121 (333)
.++...........
T Consensus 85 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 164 (282)
T 3pgw_A 85 QYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYM 164 (282)
T ss_pred EEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCCC
Confidence 98854432100000
Q ss_pred ----------------------------------CCCcccCCCCeEEEeCCCCCCCHHHHHHHhhccCceEEEEEEeCCC
Q psy8956 122 ----------------------------------GPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDEN 167 (333)
Q Consensus 122 ----------------------------------~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~ 167 (333)
.........++|||+|||..+++++|+++|+.||.|..+.+..+.
T Consensus 165 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~- 243 (282)
T 3pgw_A 165 PPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR- 243 (282)
T ss_pred CCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-
Confidence 000122356789999999999999999999999999999999753
Q ss_pred CCceeEEEEEeCCHHHHHHHHHHhCCceec-cceeEEEeee
Q psy8956 168 GKSKGFGFIQFFSYKAAEKAIIEMNGRMIQ-HNSTFVSLAE 207 (333)
Q Consensus 168 ~~~~~~~~v~f~~~~~a~~a~~~l~~~~~~-~~~i~v~~~~ 207 (333)
+|+|||+|.+.++|.+|+..|++..+. |+.|.|.++.
T Consensus 244 ---~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 244 ---HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred ---CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 589999999999999999999999999 9999999874
No 30
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.96 E-value=3.3e-28 Score=204.41 Aligned_cols=160 Identities=26% Similarity=0.462 Sum_probs=145.0
Q ss_pred CcccccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEe
Q psy8956 29 NKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIIT 108 (333)
Q Consensus 29 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~ 108 (333)
......++|||+|||+++|+++|+++|+.||.|.++.+.+ ++|||||+|.+.++|.+|+..|+|..+.|+.|.|.
T Consensus 17 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~-----~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 91 (261)
T 3sde_A 17 KTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR-----DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIR 91 (261)
T ss_dssp CSSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET-----TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC-----CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEee
Confidence 3346678999999999999999999999999999998875 48999999999999999999999999999999999
Q ss_pred eeccCCCCCCCCCCCCcccCCCCeEEEeCCCCCCCHHHHHHHhhccCceEEEEEEeCCCCCceeEEEEEeCCHHHHHHHH
Q psy8956 109 FVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAI 188 (333)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~ 188 (333)
++. +..+|+|+|||..+++++|+++|+.||.|..+.+..+.+|.++|+|||+|.+.++|.+|+
T Consensus 92 ~a~-----------------~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~ 154 (261)
T 3sde_A 92 FAT-----------------HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKAL 154 (261)
T ss_dssp ECC-----------------CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHH
T ss_pred ecc-----------------cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHH
Confidence 882 356899999999999999999999999999999999989999999999999999999999
Q ss_pred HHhCC-ceec---cceeEEEeeeecC
Q psy8956 189 IEMNG-RMIQ---HNSTFVSLAEIVP 210 (333)
Q Consensus 189 ~~l~~-~~~~---~~~i~v~~~~~~~ 210 (333)
..+++ ..+. ++.+.|.+.....
T Consensus 155 ~~l~~~~~~~~~~~r~i~v~~~~~~~ 180 (261)
T 3sde_A 155 ERCGDGAFLLTTTPRPVIVEPMEQFD 180 (261)
T ss_dssp HHHHHSCEESSSSCCBCEEEECCCEE
T ss_pred HHhcCCeEEecCCCceEEEeeccccC
Confidence 99954 4444 8999999886543
No 31
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.96 E-value=4.2e-29 Score=197.52 Aligned_cols=166 Identities=21% Similarity=0.284 Sum_probs=141.6
Q ss_pred cccCCCCeEEEeCCCCCCCHHHHHHHhhccCceEEEEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeccceeEEE
Q psy8956 125 EKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVS 204 (333)
Q Consensus 125 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~~~~~i~v~ 204 (333)
......++|||+|||.++++++|+++|+.+|.+..+.+....++.++|+|||+|.+.++|.+|+ .+++..+.|+.+.|.
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~ 86 (175)
T 1fje_B 8 SESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLE 86 (175)
T ss_dssp SSCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEe
Confidence 3445678999999999999999999999998765533333335677899999999999999999 599999999999999
Q ss_pred eeeecCCCccCCCCCCCCCCCCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeec--CCcEEEEEECCHHHHHHHHH
Q psy8956 205 LAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS--DKHIGFIEFIMPKHATHAVS 282 (333)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~--~~~~~fV~f~~~~~A~~a~~ 282 (333)
++..... ......++|+|+|||..+++++|+++|++||.|..+ ... .+|+|||+|.+.++|.+|++
T Consensus 87 ~~~~~~~-----------~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~A~~A~~ 154 (175)
T 1fje_B 87 KPKGRDS-----------KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLE 154 (175)
T ss_dssp CCCCSSC-----------STTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-CSSSSCCSEEEEECSSHHHHHHHHH
T ss_pred cCCCccc-----------cccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-cCCCCCceEEEEEECCHHHHHHHHH
Confidence 9865432 223467899999999999999999999999998777 211 18999999999999999999
Q ss_pred HhCCCeeCCeeEEEEecCCCC
Q psy8956 283 TMNGHVFKSKPLKVTLSGTKP 303 (333)
Q Consensus 283 ~l~g~~l~g~~l~v~~a~~~~ 303 (333)
.|||..|+|++|+|.||++++
T Consensus 155 ~l~g~~~~g~~i~v~~a~~k~ 175 (175)
T 1fje_B 155 EKQGAEIDGRSVSLYYTGEKG 175 (175)
T ss_dssp HHTEEEETTEEEEEEECSSCC
T ss_pred HhCCCEECCeEEEEEecCCCC
Confidence 999999999999999998763
No 32
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.96 E-value=7.2e-28 Score=194.34 Aligned_cols=170 Identities=23% Similarity=0.387 Sum_probs=143.6
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHhhcc----C-------ceEEEEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceec
Q psy8956 129 KKDKVFVKNLVETVDEEELKSHFIKF----G-------NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQ 197 (333)
Q Consensus 129 ~~~~l~v~~l~~~~~~~~l~~~f~~~----g-------~v~~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~~ 197 (333)
..++|||+|||.++++++|+++|+.| | .|..+.+.. ++|+|||+|.+.++|.+|+ .+++..+.
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~-----~~g~afV~F~~~~~A~~Al-~l~g~~~~ 76 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ-----DKNFAFLEFRSVDETTQAM-AFDGIIFQ 76 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEET-----TTTEEEEEESCSHHHHHHG-GGTTEEET
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecC-----CCCEEEEEeCCHHHHHHHH-HhcCCEEc
Confidence 46899999999999999999999999 5 666666643 4799999999999999999 89999999
Q ss_pred cceeEEEeeeecCCCccCCC-------CCCCCCCCCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC------C
Q psy8956 198 HNSTFVSLAEIVPGKKVFPK-------VKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------K 264 (333)
Q Consensus 198 ~~~i~v~~~~~~~~~~~~~~-------~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~------~ 264 (333)
|+.+.|.++........... .........+.++|+|+|||..+++++|+++|++||.|..+.+..+ +
T Consensus 77 g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~ 156 (198)
T 2yh0_A 77 GQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSK 156 (198)
T ss_dssp TEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEE
T ss_pred CceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcc
Confidence 99999998765433211100 0011223356799999999999999999999999999999999876 6
Q ss_pred cEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEecCCCCC
Q psy8956 265 HIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKPG 304 (333)
Q Consensus 265 ~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~a~~~~~ 304 (333)
|+|||+|.+.++|.+|++.|||..|+|+.|.|.+|+++..
T Consensus 157 g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 157 GYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAK 196 (198)
T ss_dssp EEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred eEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 7999999999999999999999999999999999988754
No 33
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.96 E-value=3.6e-28 Score=191.58 Aligned_cols=153 Identities=25% Similarity=0.447 Sum_probs=137.6
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHhhcc----C-------ceEEEEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceec
Q psy8956 129 KKDKVFVKNLVETVDEEELKSHFIKF----G-------NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQ 197 (333)
Q Consensus 129 ~~~~l~v~~l~~~~~~~~l~~~f~~~----g-------~v~~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~~ 197 (333)
+.++|||+|||.++++++|+++|+.| | .|..+.+... +|+|||+|.+.++|..|+ .+++..+.
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~-----~g~afV~f~~~~~A~~A~-~~~~~~~~ 76 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-----KNFAFLEFRSVDETTQAM-AFDGIIFQ 76 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETT-----TTEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCC-----CCEEEEEeCCHHHHHHHH-HhCCcEec
Confidence 46799999999999999999999999 6 7777777654 799999999999999999 89999999
Q ss_pred cceeEEEeeeecCCCccCCCCCCCCCCCCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC------CcEEEEEE
Q psy8956 198 HNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEF 271 (333)
Q Consensus 198 ~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~------~~~~fV~f 271 (333)
|+.+.+.++..... ....++|+|+|||..+++++|+++|++||.|..+.+..+ +|+|||+|
T Consensus 77 g~~i~v~~~~~~~~-------------~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f 143 (172)
T 2g4b_A 77 GQSLKIRRPHDYQP-------------LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEY 143 (172)
T ss_dssp TEECEEECCSSCCC-------------CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEE
T ss_pred CceeeecCCcccCC-------------CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEe
Confidence 99999988643221 233689999999999999999999999999999999877 67999999
Q ss_pred CCHHHHHHHHHHhCCCeeCCeeEEEEecC
Q psy8956 272 IMPKHATHAVSTMNGHVFKSKPLKVTLSG 300 (333)
Q Consensus 272 ~~~~~A~~a~~~l~g~~l~g~~l~v~~a~ 300 (333)
.+.++|.+|++.|||..++|++|.|.+|.
T Consensus 144 ~~~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 144 VDINVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp SSTTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCHHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 99999999999999999999999999984
No 34
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.95 E-value=2.2e-26 Score=193.33 Aligned_cols=155 Identities=29% Similarity=0.465 Sum_probs=140.5
Q ss_pred cCCCCeEEEeCCCCCCCHHHHHHHhhccCceEEEEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeccceeEEEee
Q psy8956 127 QYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLA 206 (333)
Q Consensus 127 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~ 206 (333)
....++|||+|||.++++++|+++|+.||.|..+.+.++ +|+|||+|.+.++|..|+..+++..+.|+.+.|.++
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 93 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD-----RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFA 93 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT-----TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC-----CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeec
Confidence 345679999999999999999999999999999998754 799999999999999999999999999999999997
Q ss_pred eecCCCccCCCCCCCCCCCCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC-----CcEEEEEECCHHHHHHHH
Q psy8956 207 EIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAV 281 (333)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~-----~~~~fV~f~~~~~A~~a~ 281 (333)
. +.++|+|+|||..+++++|+++|++||.|..+.++.+ +|+|||+|.+.++|.+|+
T Consensus 94 ~-------------------~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~ 154 (261)
T 3sde_A 94 T-------------------HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKAL 154 (261)
T ss_dssp C-------------------CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHH
T ss_pred c-------------------cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHH
Confidence 4 2478999999999999999999999999999999876 789999999999999999
Q ss_pred HHhC-CCeeC---CeeEEEEecCCCCCC
Q psy8956 282 STMN-GHVFK---SKPLKVTLSGTKPGV 305 (333)
Q Consensus 282 ~~l~-g~~l~---g~~l~v~~a~~~~~~ 305 (333)
..|| |..+. |++|.|.++......
T Consensus 155 ~~l~~~~~~~~~~~r~i~v~~~~~~~~~ 182 (261)
T 3sde_A 155 ERCGDGAFLLTTTPRPVIVEPMEQFDDE 182 (261)
T ss_dssp HHHHHSCEESSSSCCBCEEEECCCEESS
T ss_pred HHhcCCeEEecCCCceEEEeeccccCcc
Confidence 9995 45554 999999999876443
No 35
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.88 E-value=1.7e-22 Score=147.37 Aligned_cols=109 Identities=24% Similarity=0.455 Sum_probs=73.7
Q ss_pred cceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeeccC
Q psy8956 34 ENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELK 113 (333)
Q Consensus 34 ~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~~~~~ 113 (333)
..+|||+|||+.+|+++|+++|++||.|.+++|+++.. .++|||||+|.+.++|.+|++.|+|..+.|+.|.|.++..+
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~-~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN-GSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 83 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT-EEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCC-CCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence 45799999999999999999999999999999999864 38999999999999999999999999999999999988543
Q ss_pred CCCCCCCCCCCcccCCCCeEEEeCCCCCCCHHH
Q psy8956 114 PGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEE 146 (333)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~ 146 (333)
..... ..........+|||+|||+.+|++.
T Consensus 84 ~~~~~---~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 84 KEREA---ELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CC-------------------------------
T ss_pred ccccc---ccccccCCCCceEeCCCCCCccccc
Confidence 32211 1222333456799999999998763
No 36
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.88 E-value=7.5e-22 Score=152.88 Aligned_cols=138 Identities=15% Similarity=0.157 Sum_probs=103.9
Q ss_pred CceeEEEEEeCCHHHHHHHHHHhCCceeccceeEEEeeeecCCCccCCCCCCCCCCCCccceEEEecCCCCCCHHHHHHH
Q psy8956 169 KSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEEL 248 (333)
Q Consensus 169 ~~~~~~~v~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~ 248 (333)
.++|+|||+|.+.++|.+|+..+++....+..+.+.........................++|||+|||..+++++|+++
T Consensus 11 ~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~ 90 (158)
T 2kn4_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLTYRTSPDTLRRV 90 (158)
T ss_dssp SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCCTTCCHHHHHHH
T ss_pred cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHH
Confidence 57899999999999999999887653322222222111000000000111112223456789999999999999999999
Q ss_pred hhccCCeeEEEeecC------CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEecCCCCCCC
Q psy8956 249 FARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKPGVS 306 (333)
Q Consensus 249 f~~~g~v~~v~i~~~------~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~a~~~~~~~ 306 (333)
|++||.|..+.+..+ +|+|||+|.+.++|.+|++.|||..|+|++|.|.+|+.+..+.
T Consensus 91 F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 154 (158)
T 2kn4_A 91 FEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPD 154 (158)
T ss_dssp HHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSCCC
T ss_pred HHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCCC
Confidence 999999999999875 7899999999999999999999999999999999999865443
No 37
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.86 E-value=4.1e-21 Score=147.22 Aligned_cols=134 Identities=22% Similarity=0.223 Sum_probs=113.2
Q ss_pred CceeEEEEEeCCHHHHHHHHHHh-CCceeccceeEEEeeeecCCCc---cCCCCCCCCCCCCccceEEEecCCCCCCHHH
Q psy8956 169 KSKGFGFIQFFSYKAAEKAIIEM-NGRMIQHNSTFVSLAEIVPGKK---VFPKVKPPLLQPARKNKIFVANLPSNINNSE 244 (333)
Q Consensus 169 ~~~~~~~v~f~~~~~a~~a~~~l-~~~~~~~~~i~v~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~ 244 (333)
..+|+++++|.+.+.|.+|+..+ ++..+.| .+.+.++....... .............+.++|||+|||..+++++
T Consensus 11 ~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~ 89 (150)
T 2i2y_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKTE 89 (150)
T ss_dssp SSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSCHH
T ss_pred cccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHH
Confidence 56899999999999999999999 9999999 88888764321110 1111122233455679999999999999999
Q ss_pred HHHHhhccCCeeEEEeecC-CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEecCCCC
Q psy8956 245 FEELFARFGTITSSSLVSD-KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKP 303 (333)
Q Consensus 245 l~~~f~~~g~v~~v~i~~~-~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~a~~~~ 303 (333)
|+++|++||.|..+++..+ +|+|||+|.+.++|.+|++.|||..|+|++|+|.+++++.
T Consensus 90 l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 90 LERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp HHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred HHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 9999999999999999988 9999999999999999999999999999999999998864
No 38
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.85 E-value=6.7e-21 Score=134.69 Aligned_cols=81 Identities=22% Similarity=0.437 Sum_probs=76.4
Q ss_pred ccccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEee
Q psy8956 31 VYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITF 109 (333)
Q Consensus 31 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~-~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~ 109 (333)
....++|||+|||+++|+++|+++|++||.|.++++.+++ +|.++|||||+|.+.++|.+|++.|+|..+.|+.|.|.+
T Consensus 16 ~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~ 95 (99)
T 4fxv_A 16 YFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSY 95 (99)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3445789999999999999999999999999999999988 899999999999999999999999999999999999999
Q ss_pred ec
Q psy8956 110 VE 111 (333)
Q Consensus 110 ~~ 111 (333)
+.
T Consensus 96 Ak 97 (99)
T 4fxv_A 96 AR 97 (99)
T ss_dssp CC
T ss_pred ee
Confidence 83
No 39
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.85 E-value=3.8e-20 Score=143.21 Aligned_cols=148 Identities=20% Similarity=0.188 Sum_probs=113.5
Q ss_pred EEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeeccC--CCCCCCCCCCCcccCCCCeEEEeCCCC
Q psy8956 63 DVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELK--PGQRSKPVGPEEKQYKKDKVFVKNLVE 140 (333)
Q Consensus 63 ~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~~~~~--~~~~~~~~~~~~~~~~~~~l~v~~l~~ 140 (333)
++.+..+.. .++|||||+|.+.++|.+|++.+++....+..+.+.-.... ..................+|||+|||.
T Consensus 2 ~~kl~ln~~-~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~ 80 (158)
T 2kn4_A 2 QYKLILNGK-TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLTY 80 (158)
T ss_dssp EEEEEEECS-SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCCT
T ss_pred cEEEEecCc-cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCCC
Confidence 355666654 58999999999999999999988865433333332211000 000011111222334578999999999
Q ss_pred CCCHHHHHHHhhccCceEEEEEEeCC-CCCceeEEEEEeCCHHHHHHHHHHhCCceeccceeEEEeeeecCC
Q psy8956 141 TVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPG 211 (333)
Q Consensus 141 ~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~ 211 (333)
.+++++|+++|+.||.|..+.+..+. ++.++|+|||+|.+.++|..|+..|++..+.|+.|.|.++.....
T Consensus 81 ~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 152 (158)
T 2kn4_A 81 RTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRP 152 (158)
T ss_dssp TCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSC
T ss_pred CCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCC
Confidence 99999999999999999999999885 788999999999999999999999999999999999999876543
No 40
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.82 E-value=1.4e-20 Score=130.93 Aligned_cols=81 Identities=25% Similarity=0.392 Sum_probs=73.5
Q ss_pred cceEEEeCCCCCCCHHHHHHHHhcCC-CeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhc-CCccCCeeeEEeee
Q psy8956 34 ENELHVNNLEPSVDNQALINEFKKFG-TLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMN-GHLIGSKPVIITFV 110 (333)
Q Consensus 34 ~~~l~V~nLp~~~t~~~l~~~f~~~g-~v~~v~i~~~~-~~~~~g~a~v~f~~~e~A~~al~~l~-~~~~~g~~i~v~~~ 110 (333)
+++|||+|||+++|+++|+++|++|| .|.+|++++++ ++.++|||||+|.+.++|.+|++.++ +..+.|+.|.|.++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 46899999999999999999999999 89999999988 89999999999999999999998774 45799999999998
Q ss_pred ccCC
Q psy8956 111 ELKP 114 (333)
Q Consensus 111 ~~~~ 114 (333)
.+++
T Consensus 81 ~~~~ 84 (91)
T 2lxi_A 81 DPKP 84 (91)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 5433
No 41
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.81 E-value=2.2e-19 Score=129.31 Aligned_cols=79 Identities=15% Similarity=0.238 Sum_probs=75.6
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeee
Q psy8956 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFV 110 (333)
Q Consensus 32 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~-~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~~ 110 (333)
.+.++|||+|||+.+++++|+++|++||.|.++.|+.+. ++.++|||||+|.+.++|.+|++.|||..+.|+.|.|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 345789999999999999999999999999999999998 7999999999999999999999999999999999999987
No 42
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.81 E-value=2.2e-19 Score=125.04 Aligned_cols=80 Identities=18% Similarity=0.263 Sum_probs=75.0
Q ss_pred CCCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecCCcEEEEEECCHHHHHHHHHHhCCCe--eCCeeEEEEecCC
Q psy8956 224 QPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKHIGFIEFIMPKHATHAVSTMNGHV--FKSKPLKVTLSGT 301 (333)
Q Consensus 224 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~~~~~fV~f~~~~~A~~a~~~l~g~~--l~g~~l~v~~a~~ 301 (333)
...++++|||+|||..+++++|+++|++||.|.++.+++.+|+|||+|.+.++|.+|++.|+|.. ++|++|.|+||+.
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~~ 96 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTS 96 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECSC
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEeccc
Confidence 44578999999999999999999999999999999999999999999999999999999999876 7899999999988
Q ss_pred CC
Q psy8956 302 KP 303 (333)
Q Consensus 302 ~~ 303 (333)
++
T Consensus 97 k~ 98 (100)
T 3r27_A 97 QK 98 (100)
T ss_dssp SC
T ss_pred cc
Confidence 64
No 43
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.5e-19 Score=127.21 Aligned_cols=85 Identities=21% Similarity=0.319 Sum_probs=77.1
Q ss_pred CCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecCCcEEEEEECCHHHHHHHHHHhCC--CeeCCeeEEEEecCCC
Q psy8956 225 PARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKHIGFIEFIMPKHATHAVSTMNG--HVFKSKPLKVTLSGTK 302 (333)
Q Consensus 225 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~~~~~fV~f~~~~~A~~a~~~l~g--~~l~g~~l~v~~a~~~ 302 (333)
..+.++|||+|||..+++++|+++|++||.|.+|+++.++|+|||+|.+.++|.+|++.|++ ..|+|++|.|.+|+.+
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~~ 92 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHK 92 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCCC
Confidence 45678999999999999999999999999999999999999999999999999999998864 7899999999999987
Q ss_pred CCCCCCC
Q psy8956 303 PGVSITN 309 (333)
Q Consensus 303 ~~~~~~~ 309 (333)
+......
T Consensus 93 ~~~~~~~ 99 (105)
T 1sjq_A 93 ELKTDSS 99 (105)
T ss_dssp SCCCTTC
T ss_pred CCCcccc
Confidence 6555433
No 44
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.81 E-value=3.2e-19 Score=123.45 Aligned_cols=81 Identities=22% Similarity=0.475 Sum_probs=75.3
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeee
Q psy8956 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFV 110 (333)
Q Consensus 32 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~-~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~~ 110 (333)
.+.++|||+|||..+++++|+++|++||.|.++.+..+. ++.++|||||+|.+.++|.+|++.|+|..+.|+.|.|.++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 456789999999999999999999999999999999997 8999999999999999999999999999999999999998
Q ss_pred cc
Q psy8956 111 EL 112 (333)
Q Consensus 111 ~~ 112 (333)
..
T Consensus 84 ~~ 85 (87)
T 3bs9_A 84 TR 85 (87)
T ss_dssp C-
T ss_pred CC
Confidence 43
No 45
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.80 E-value=2.8e-19 Score=130.31 Aligned_cols=102 Identities=25% Similarity=0.385 Sum_probs=73.0
Q ss_pred ccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC----CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEecCCC
Q psy8956 227 RKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302 (333)
Q Consensus 227 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~----~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~a~~~ 302 (333)
..++|||+|||..+++++|+++|++||.|..|+++.+ +|||||+|.+.++|.+|++.|||..|+|+.|.|.+++.+
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 83 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence 3468999999999999999999999999999999877 679999999999999999999999999999999999887
Q ss_pred CCCCCCCCCCCC-CCCCCCCCCCcccc
Q psy8956 303 PGVSITNPTKAP-KKPAYIDEVKNVIG 328 (333)
Q Consensus 303 ~~~~~~~~~~~~-~~~~~~~~~~~~~~ 328 (333)
..+......... ....|..++++.+.
T Consensus 84 ~~~~~~~~~~~~~~~~lyv~Nl~~~~T 110 (115)
T 4f25_A 84 KEREAELGARAKEFTNVYIKNFGPGST 110 (115)
T ss_dssp CC-------------------------
T ss_pred cccccccccccCCCCceEeCCCCCCcc
Confidence 665443332222 33456666665443
No 46
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.80 E-value=6.5e-19 Score=126.69 Aligned_cols=84 Identities=23% Similarity=0.408 Sum_probs=77.9
Q ss_pred cCcccccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeE
Q psy8956 28 NNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVI 106 (333)
Q Consensus 28 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~-~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~ 106 (333)
.......++|||+|||+.+++++|+++|++||.|.++.+.++. ++.++|||||+|.+.++|.+|++.|+|..+.|+.|.
T Consensus 20 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 99 (108)
T 2jrs_A 20 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMK 99 (108)
T ss_dssp CCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 3334567899999999999999999999999999999999987 788999999999999999999999999999999999
Q ss_pred Eeeec
Q psy8956 107 ITFVE 111 (333)
Q Consensus 107 v~~~~ 111 (333)
|.++.
T Consensus 100 V~~a~ 104 (108)
T 2jrs_A 100 VGHVT 104 (108)
T ss_dssp EECSC
T ss_pred EEEcc
Confidence 99884
No 47
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.80 E-value=3.3e-19 Score=125.92 Aligned_cols=76 Identities=30% Similarity=0.590 Sum_probs=71.3
Q ss_pred CccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC------CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEec
Q psy8956 226 ARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299 (333)
Q Consensus 226 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~------~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~a 299 (333)
..+++|||+|||..+++++|+++|++||.|..+++..+ +|+|||+|.+.++|.+|++.|||..|+|++|+|.+|
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 34678999999999999999999999999999999876 679999999999999999999999999999999999
Q ss_pred CC
Q psy8956 300 GT 301 (333)
Q Consensus 300 ~~ 301 (333)
++
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 64
No 48
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=9.7e-19 Score=124.18 Aligned_cols=83 Identities=17% Similarity=0.181 Sum_probs=75.8
Q ss_pred CCCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecCCcEEEEEECCHHHHHHHHHHhCCC--eeCCeeEEEEecCC
Q psy8956 224 QPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKHIGFIEFIMPKHATHAVSTMNGH--VFKSKPLKVTLSGT 301 (333)
Q Consensus 224 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~~~~~fV~f~~~~~A~~a~~~l~g~--~l~g~~l~v~~a~~ 301 (333)
...++++|||+|||..+++++|+++|++||.|..+.++.++++|||+|.+.++|.+|++.|++. .++|++|.|.|++.
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~ 90 (104)
T 1wex_A 11 KVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTS 90 (104)
T ss_dssp CCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSS
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccC
Confidence 3456789999999999999999999999999999999999999999999999999999998764 59999999999998
Q ss_pred CCCCC
Q psy8956 302 KPGVS 306 (333)
Q Consensus 302 ~~~~~ 306 (333)
+....
T Consensus 91 ~~~~~ 95 (104)
T 1wex_A 91 KRITR 95 (104)
T ss_dssp SSCCC
T ss_pred ccccC
Confidence 76554
No 49
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.80 E-value=1.3e-19 Score=126.46 Aligned_cols=81 Identities=15% Similarity=0.388 Sum_probs=74.2
Q ss_pred ccccceEEEeCCCCCCCHHHHHHHHhcCCC--eeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCc----cCCe
Q psy8956 31 VYKENELHVNNLEPSVDNQALINEFKKFGT--LRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHL----IGSK 103 (333)
Q Consensus 31 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~--v~~v~i~~~~-~~~~~g~a~v~f~~~e~A~~al~~l~~~~----~~g~ 103 (333)
...-++|||+|||+.+|+++|+++|++||. +.+|++++++ +|.++|||||+|.+.++|.+|++.|+|.. +.|+
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 345678999999999999999999999994 6789999998 89999999999999999999999999974 8999
Q ss_pred eeEEeeec
Q psy8956 104 PVIITFVE 111 (333)
Q Consensus 104 ~i~v~~~~ 111 (333)
.|.|.++.
T Consensus 86 ~i~V~~Ak 93 (95)
T 2lkz_A 86 TIGVDFAK 93 (95)
T ss_dssp EEEEEECC
T ss_pred EEEEEEcc
Confidence 99999983
No 50
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=8.9e-19 Score=124.49 Aligned_cols=82 Identities=21% Similarity=0.399 Sum_probs=77.4
Q ss_pred ccccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeee
Q psy8956 31 VYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFV 110 (333)
Q Consensus 31 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~~ 110 (333)
..+.++|||+|||+.+|+++|+++|+.||.|.++.+..+.++.++|||||+|.+.++|.+|++.|++..+.|+.|.|.++
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 93 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAIS 93 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 35668899999999999999999999999999999999998999999999999999999999999999999999999998
Q ss_pred cc
Q psy8956 111 EL 112 (333)
Q Consensus 111 ~~ 112 (333)
..
T Consensus 94 ~~ 95 (100)
T 2do4_A 94 NS 95 (100)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 51
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.79 E-value=8.9e-19 Score=120.03 Aligned_cols=78 Identities=27% Similarity=0.471 Sum_probs=74.4
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeecc
Q psy8956 35 NELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVEL 112 (333)
Q Consensus 35 ~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~-~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~~~~ 112 (333)
.+|||+|||+.+++++|+++|++||.|.++.+.++. ++.++|||||+|.+.++|.+|++.|+|..+.|+.|.|.++..
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 579999999999999999999999999999999996 899999999999999999999999999999999999999843
No 52
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.79 E-value=2.4e-18 Score=125.58 Aligned_cols=85 Identities=22% Similarity=0.491 Sum_probs=78.9
Q ss_pred ccccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEee
Q psy8956 31 VYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITF 109 (333)
Q Consensus 31 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~-~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~ 109 (333)
..+.++|||+|||+.+++++|+++|..||.|..+.+.++. ++.++|||||+|.+.++|.+|++.|+|..+.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 91 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3567899999999999999999999999999999999997 899999999999999999999999999999999999999
Q ss_pred eccCCC
Q psy8956 110 VELKPG 115 (333)
Q Consensus 110 ~~~~~~ 115 (333)
+..++.
T Consensus 92 a~~~~~ 97 (115)
T 2dgo_A 92 ATRKPP 97 (115)
T ss_dssp SSCCCC
T ss_pred ccCCCC
Confidence 854443
No 53
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=1.4e-18 Score=122.35 Aligned_cols=84 Identities=20% Similarity=0.416 Sum_probs=77.8
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeee
Q psy8956 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFV 110 (333)
Q Consensus 32 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~-~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~~ 110 (333)
.+.++|||+|||+.+++++|+++|++||.|.++.+.++. ++.++|||||+|.+.++|.+|++.|++..+.|+.|.|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 456889999999999999999999999999999999997 7899999999999999999999999999999999999998
Q ss_pred ccCCC
Q psy8956 111 ELKPG 115 (333)
Q Consensus 111 ~~~~~ 115 (333)
..+..
T Consensus 83 ~~~~~ 87 (95)
T 2dnz_A 83 TERLD 87 (95)
T ss_dssp SCCCC
T ss_pred ccccC
Confidence 54433
No 54
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.79 E-value=3.6e-19 Score=136.33 Aligned_cols=132 Identities=20% Similarity=0.200 Sum_probs=111.3
Q ss_pred CcccEEEEEeCCHHHHHHHHHHh-cCCccCCeeeEEeeeccCCC-----CCCCCCCCCcccCCCCeEEEeCCCCCCCHHH
Q psy8956 73 ESRGFAIIVFNTPAEAKKARVEM-NGHLIGSKPVIITFVELKPG-----QRSKPVGPEEKQYKKDKVFVKNLVETVDEEE 146 (333)
Q Consensus 73 ~~~g~a~v~f~~~e~A~~al~~l-~~~~~~g~~i~v~~~~~~~~-----~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~ 146 (333)
..+|+++++|.+.++|.+|++.+ +|..+.| .+.+.++..... ...............++|||+|||..+++++
T Consensus 11 ~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~ 89 (150)
T 2i2y_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKTE 89 (150)
T ss_dssp SSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSCHH
T ss_pred cccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHH
Confidence 46899999999999999999999 9999999 999887643211 1111112334445678999999999999999
Q ss_pred HHHHhhccCceEEEEEEeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeccceeEEEeeeec
Q psy8956 147 LKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIV 209 (333)
Q Consensus 147 l~~~f~~~g~v~~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~ 209 (333)
|+++|+.||.|..+.+..+ ++|+|||+|.+.++|..|+..+++..+.|+.|.|.++...
T Consensus 90 l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 90 LERAFGYYGPLRSVWVARN----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp HHHHHHHHSCEEEEEECSS----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred HHHHHHhhCCEEEEEEeeC----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 9999999999999999876 4789999999999999999999999999999999998654
No 55
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=1.5e-18 Score=124.10 Aligned_cols=83 Identities=34% Similarity=0.649 Sum_probs=77.5
Q ss_pred ccccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeee
Q psy8956 31 VYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFV 110 (333)
Q Consensus 31 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~~ 110 (333)
..+.++|||+|||+.+|+++|+++|+.||.|..+.+..+ ++.++|||||+|.+.++|.+|++.|++..+.|+.|.|.++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 90 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC-SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 356788999999999999999999999999999999998 8889999999999999999999999999999999999998
Q ss_pred ccCC
Q psy8956 111 ELKP 114 (333)
Q Consensus 111 ~~~~ 114 (333)
..+.
T Consensus 91 ~~~~ 94 (103)
T 2d9p_A 91 QRKE 94 (103)
T ss_dssp SSCC
T ss_pred cccc
Confidence 5443
No 56
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.8e-18 Score=120.99 Aligned_cols=84 Identities=19% Similarity=0.325 Sum_probs=76.2
Q ss_pred CCCCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecCCcEEEEEECCHHHHHHHHHHhC--CCeeCCeeEEEEecC
Q psy8956 223 LQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKHIGFIEFIMPKHATHAVSTMN--GHVFKSKPLKVTLSG 300 (333)
Q Consensus 223 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~~~~~fV~f~~~~~A~~a~~~l~--g~~l~g~~l~v~~a~ 300 (333)
....++++|||+|||..+++++|+++|++||.|..+.++.++++|||+|.+.++|.+|++.|+ +..++|++|.|.||+
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~ 89 (101)
T 2cq1_A 10 MDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSN 89 (101)
T ss_dssp CCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECS
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcC
Confidence 344577899999999999999999999999999999999999999999999999999999874 678999999999999
Q ss_pred CCCCCC
Q psy8956 301 TKPGVS 306 (333)
Q Consensus 301 ~~~~~~ 306 (333)
.+....
T Consensus 90 ~~~~~~ 95 (101)
T 2cq1_A 90 HKELKT 95 (101)
T ss_dssp CSSCCC
T ss_pred cccCcC
Confidence 876543
No 57
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=1.3e-18 Score=123.48 Aligned_cols=84 Identities=23% Similarity=0.394 Sum_probs=78.2
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeee
Q psy8956 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFV 110 (333)
Q Consensus 32 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~-~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~~ 110 (333)
.+.++|||+|||+.+|+++|+++|+.||.|.++.+..+. ++.++|||||+|.+.++|.+|++.|+|..+.|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 456889999999999999999999999999999999998 8999999999999999999999999999999999999998
Q ss_pred ccCCC
Q psy8956 111 ELKPG 115 (333)
Q Consensus 111 ~~~~~ 115 (333)
..+..
T Consensus 86 ~~~~~ 90 (99)
T 1whw_A 86 TIKKE 90 (99)
T ss_dssp CCCST
T ss_pred CCCcc
Confidence 54443
No 58
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=1.9e-18 Score=122.50 Aligned_cols=82 Identities=27% Similarity=0.382 Sum_probs=76.2
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeee
Q psy8956 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFV 110 (333)
Q Consensus 32 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~-~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~~ 110 (333)
.+.++|||+|||..+++++|+++|++||.|.++.++.+. ++.++|||||+|.+.++|.+|++ |++..+.|+.|.|.++
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRA 86 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEEC
Confidence 456889999999999999999999999999999999987 78899999999999999999998 9999999999999998
Q ss_pred ccCC
Q psy8956 111 ELKP 114 (333)
Q Consensus 111 ~~~~ 114 (333)
..+.
T Consensus 87 ~~~~ 90 (99)
T 2dgs_A 87 EPRD 90 (99)
T ss_dssp CCCC
T ss_pred CCCc
Confidence 5433
No 59
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.79 E-value=2.2e-18 Score=123.64 Aligned_cols=83 Identities=20% Similarity=0.417 Sum_probs=77.5
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCC---eeeEEe
Q psy8956 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGS---KPVIIT 108 (333)
Q Consensus 32 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g---~~i~v~ 108 (333)
.+.++|||+|||+.+++++|+++|+.||.|.++.+.++.++.++|||||+|.+.++|.+|++.|+|..+.| +.|.|.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~ 92 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVK 92 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEE
Confidence 45688999999999999999999999999999999999999999999999999999999999999999988 999999
Q ss_pred eeccCC
Q psy8956 109 FVELKP 114 (333)
Q Consensus 109 ~~~~~~ 114 (333)
++....
T Consensus 93 ~a~~~~ 98 (105)
T 2dnh_A 93 FADTDK 98 (105)
T ss_dssp ESCSSC
T ss_pred ECccCc
Confidence 985443
No 60
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.79 E-value=2e-19 Score=125.06 Aligned_cols=79 Identities=19% Similarity=0.275 Sum_probs=71.4
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhcCC--CeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeec
Q psy8956 35 NELHVNNLEPSVDNQALINEFKKFG--TLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVE 111 (333)
Q Consensus 35 ~~l~V~nLp~~~t~~~l~~~f~~~g--~v~~v~i~~~~-~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~~~ 111 (333)
.+|||+|||+++|+++|+++|+.|| .|.+++++.++ +|.++|||||+|.+.++|.+|++.|+|..+.|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4699999999999999999999999 99999999998 89999999999999999999999999999999999999884
Q ss_pred cC
Q psy8956 112 LK 113 (333)
Q Consensus 112 ~~ 113 (333)
.+
T Consensus 82 ~~ 83 (90)
T 3p5t_L 82 KL 83 (90)
T ss_dssp --
T ss_pred CC
Confidence 33
No 61
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.79 E-value=9.2e-19 Score=123.38 Aligned_cols=81 Identities=14% Similarity=0.272 Sum_probs=76.1
Q ss_pred ccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeec
Q psy8956 33 KENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVE 111 (333)
Q Consensus 33 ~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~-~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~~~ 111 (333)
++++|||+|||..+++++|+++|++||.|.++.+..+. +|.++|||||+|.+.++|.+|++.|+|..+.|+.|.|.++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 35789999999999999999999999999999999997 78999999999999999999999999999999999999985
Q ss_pred cC
Q psy8956 112 LK 113 (333)
Q Consensus 112 ~~ 113 (333)
.+
T Consensus 81 ~~ 82 (96)
T 2x1f_A 81 NS 82 (96)
T ss_dssp CS
T ss_pred CC
Confidence 43
No 62
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.5e-18 Score=123.85 Aligned_cols=86 Identities=26% Similarity=0.475 Sum_probs=78.9
Q ss_pred ccccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEee
Q psy8956 31 VYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITF 109 (333)
Q Consensus 31 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~-~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~ 109 (333)
..+.++|||+|||+.+++++|+++|+.||.|..+.+.++. ++.++|||||+|.+.++|.+|++.|++..+.|+.|.|.+
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3456889999999999999999999999999999999987 788999999999999999999999999999999999999
Q ss_pred eccCCCC
Q psy8956 110 VELKPGQ 116 (333)
Q Consensus 110 ~~~~~~~ 116 (333)
+......
T Consensus 89 a~~~~~~ 95 (102)
T 1x5s_A 89 AGKSSDN 95 (102)
T ss_dssp EECCCCC
T ss_pred CCCCCCC
Confidence 9654443
No 63
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.79 E-value=1.5e-18 Score=126.50 Aligned_cols=85 Identities=28% Similarity=0.480 Sum_probs=78.7
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeec
Q psy8956 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVE 111 (333)
Q Consensus 32 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~~~ 111 (333)
...++|||+|||..+|+++|+++|++||.|.++.+..+.++.++|||||+|.+.++|.+|++.|+|..+.|+.|.|.++.
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 84 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAK 84 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 45578999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred cCCCC
Q psy8956 112 LKPGQ 116 (333)
Q Consensus 112 ~~~~~ 116 (333)
.....
T Consensus 85 ~~~~~ 89 (116)
T 2fy1_A 85 KPSFQ 89 (116)
T ss_dssp CSSCS
T ss_pred CCCCC
Confidence 54443
No 64
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=9.1e-19 Score=123.33 Aligned_cols=79 Identities=19% Similarity=0.296 Sum_probs=73.5
Q ss_pred CCccceEEEecCCC-CCCHHHHHHHhhccCCeeEEEeecCCcEEEEEECCHHHHHHHHHHhCCC--eeCCeeEEEEecCC
Q psy8956 225 PARKNKIFVANLPS-NINNSEFEELFARFGTITSSSLVSDKHIGFIEFIMPKHATHAVSTMNGH--VFKSKPLKVTLSGT 301 (333)
Q Consensus 225 ~~~~~~l~v~nl~~-~~~~~~l~~~f~~~g~v~~v~i~~~~~~~fV~f~~~~~A~~a~~~l~g~--~l~g~~l~v~~a~~ 301 (333)
..++++|||+|||. .+++++|+++|++||.|.+|.++.++++|||+|.+.++|.+|++.||+. .|+|++|.|.+|+.
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~ 91 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQK 91 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECC
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCC
Confidence 44678999999999 9999999999999999999999999999999999999999999999864 59999999999986
Q ss_pred CC
Q psy8956 302 KP 303 (333)
Q Consensus 302 ~~ 303 (333)
..
T Consensus 92 ~~ 93 (102)
T 1x4d_A 92 YK 93 (102)
T ss_dssp CT
T ss_pred CC
Confidence 54
No 65
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.6e-18 Score=124.59 Aligned_cols=83 Identities=14% Similarity=0.388 Sum_probs=77.6
Q ss_pred ccccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEee
Q psy8956 31 VYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITF 109 (333)
Q Consensus 31 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~-~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~ 109 (333)
..+.++|||+|||+.+++++|+++|+.||.|.++.+..+. ++.++|||||+|.+.++|.+|++.|+|..+.|+.|.|.+
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 3566899999999999999999999999999999999998 789999999999999999999999999999999999998
Q ss_pred eccC
Q psy8956 110 VELK 113 (333)
Q Consensus 110 ~~~~ 113 (333)
+..+
T Consensus 100 a~~~ 103 (106)
T 1p27_B 100 CFVR 103 (106)
T ss_dssp SEES
T ss_pred ecCC
Confidence 8543
No 66
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.7e-18 Score=125.02 Aligned_cols=85 Identities=21% Similarity=0.315 Sum_probs=77.3
Q ss_pred CCCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecCCcEEEEEECCHHHHHHHHHHhCC--CeeCCeeEEEEecCC
Q psy8956 224 QPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKHIGFIEFIMPKHATHAVSTMNG--HVFKSKPLKVTLSGT 301 (333)
Q Consensus 224 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~~~~~fV~f~~~~~A~~a~~~l~g--~~l~g~~l~v~~a~~ 301 (333)
...++++|||+|||..+++++|+++|++||.|..|.++.++|+|||+|.+.++|.+|++.|++ ..|+|++|.|.+|+.
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~ 106 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNH 106 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGGGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSS
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEccC
Confidence 345678999999999999999999999999999999999999999999999999999999884 689999999999998
Q ss_pred CCCCCCC
Q psy8956 302 KPGVSIT 308 (333)
Q Consensus 302 ~~~~~~~ 308 (333)
++....+
T Consensus 107 k~~~~~~ 113 (119)
T 2ad9_A 107 KELKTDS 113 (119)
T ss_dssp SSCCCCC
T ss_pred CCCCccc
Confidence 7665533
No 67
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.79 E-value=1.1e-18 Score=121.53 Aligned_cols=79 Identities=19% Similarity=0.282 Sum_probs=70.9
Q ss_pred cCcccccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCc--cCCeee
Q psy8956 28 NNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHL--IGSKPV 105 (333)
Q Consensus 28 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~--~~g~~i 105 (333)
.....++++|||+|||+.+|+++|+++|++||.|.++.+++ ++|+|||+|.+.++|.+|++.|++.. +.|+.|
T Consensus 15 ~~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~-----~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i 89 (100)
T 3r27_A 15 PHKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP-----KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPA 89 (100)
T ss_dssp --CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEE
T ss_pred cccCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc-----CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEE
Confidence 33445678999999999999999999999999999999886 48999999999999999999999886 789999
Q ss_pred EEeeec
Q psy8956 106 IITFVE 111 (333)
Q Consensus 106 ~v~~~~ 111 (333)
.|.|+.
T Consensus 90 ~V~~S~ 95 (100)
T 3r27_A 90 FVNYST 95 (100)
T ss_dssp EEEECS
T ss_pred EEEecc
Confidence 999994
No 68
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.79 E-value=7.3e-19 Score=121.05 Aligned_cols=79 Identities=24% Similarity=0.422 Sum_probs=75.1
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeee
Q psy8956 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFV 110 (333)
Q Consensus 32 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~-~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~~ 110 (333)
.+.++|||+|||+.+++++|+++|++||.|.++.+.++. ++.++|+|||+|.+.++|.+|++.|+|..+.|+.|.|+++
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 456889999999999999999999999999999999885 8889999999999999999999999999999999999986
No 69
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.78 E-value=6e-19 Score=125.63 Aligned_cols=100 Identities=26% Similarity=0.392 Sum_probs=83.8
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeeccCC
Q psy8956 35 NELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKP 114 (333)
Q Consensus 35 ~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~~~~~~ 114 (333)
++|||+|||+.+|+++|+++|++||.|.++.+..+ ++|||||+|.+.++|.+|++.|+|..+.|+.|.|.++...+
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 76 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMP 76 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCC
Confidence 47999999999999999999999999999999987 68999999999999999999999999999999999986554
Q ss_pred CCCCCCCCCCcccCCCCeEEEeCCC
Q psy8956 115 GQRSKPVGPEEKQYKKDKVFVKNLV 139 (333)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~l~v~~l~ 139 (333)
.... ............++||++|+
T Consensus 77 ~~~~-~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 77 RRSR-FDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp CSSC-CCSCCCSCCCCSCCCSCCCC
T ss_pred Cccc-CCCCCccccCCCceecCCCC
Confidence 3322 11222233446789999986
No 70
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.7e-18 Score=121.84 Aligned_cols=81 Identities=25% Similarity=0.373 Sum_probs=76.6
Q ss_pred cccccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEe
Q psy8956 30 KVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIIT 108 (333)
Q Consensus 30 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~-~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~ 108 (333)
++.+.++|||+|||+.+++++|+++|+.||.|.++.+..+. ++.++|||||+|.+.++|.+|++.|+|..+.|+.|.|.
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVS 90 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567889999999999999999999999999999999988 78899999999999999999999999999999999999
Q ss_pred ee
Q psy8956 109 FV 110 (333)
Q Consensus 109 ~~ 110 (333)
++
T Consensus 91 ~a 92 (95)
T 2cqc_A 91 GP 92 (95)
T ss_dssp CC
T ss_pred ec
Confidence 87
No 71
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.78 E-value=2.3e-18 Score=125.63 Aligned_cols=86 Identities=24% Similarity=0.400 Sum_probs=79.1
Q ss_pred CcccccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEE
Q psy8956 29 NKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVII 107 (333)
Q Consensus 29 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~-~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v 107 (333)
....+.++|||+|||+.+++++|+++|+.||.|.++.+.++. ++.++|||||+|.+.++|.+|++.|++..+.|+.|.|
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 99 (115)
T 2cpz_A 20 KEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKV 99 (115)
T ss_dssp CCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 334566899999999999999999999999999999999998 8999999999999999999999999999999999999
Q ss_pred eeeccCC
Q psy8956 108 TFVELKP 114 (333)
Q Consensus 108 ~~~~~~~ 114 (333)
.++..+.
T Consensus 100 ~~a~~~~ 106 (115)
T 2cpz_A 100 QLKRSKN 106 (115)
T ss_dssp ECCCCSC
T ss_pred EEcCCCC
Confidence 9985443
No 72
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=4.4e-18 Score=121.55 Aligned_cols=84 Identities=24% Similarity=0.450 Sum_probs=76.9
Q ss_pred ccccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeee
Q psy8956 31 VYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFV 110 (333)
Q Consensus 31 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~~ 110 (333)
..+.++|||+|||+.+|+++|+++|+.||.|.++.+..+..+ ++|||||+|.+.++|.+|+..|++..+.|+.|.|.++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 90 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 90 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTT-TCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC-CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 356688999999999999999999999999999999998754 8999999999999999999999999999999999998
Q ss_pred ccCCC
Q psy8956 111 ELKPG 115 (333)
Q Consensus 111 ~~~~~ 115 (333)
..+..
T Consensus 91 ~~~~~ 95 (103)
T 2cq3_A 91 TARVM 95 (103)
T ss_dssp CSSCC
T ss_pred ccCCC
Confidence 54443
No 73
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.9e-18 Score=123.50 Aligned_cols=83 Identities=22% Similarity=0.399 Sum_probs=77.5
Q ss_pred ccccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEee
Q psy8956 31 VYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITF 109 (333)
Q Consensus 31 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~-~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~ 109 (333)
..+.++|||+|||+.+++++|+++|++||.|.++.+.++. ++.++|||||+|.+.++|.+|++.|++..+.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 3456889999999999999999999999999999999997 889999999999999999999999999999999999999
Q ss_pred eccC
Q psy8956 110 VELK 113 (333)
Q Consensus 110 ~~~~ 113 (333)
+..+
T Consensus 92 a~~~ 95 (103)
T 2cq0_A 92 AKPS 95 (103)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 8443
No 74
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.4e-18 Score=124.14 Aligned_cols=83 Identities=25% Similarity=0.431 Sum_probs=77.4
Q ss_pred ccccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEee
Q psy8956 31 VYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITF 109 (333)
Q Consensus 31 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~-~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~ 109 (333)
..+.++|||+|||+.+++++|+++|+.||.|..+.+..+. ++.++|||||+|.+.++|.+|++.|+|..+.|+.|.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQV 89 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 3556889999999999999999999999999999999988 788999999999999999999999999999999999999
Q ss_pred eccC
Q psy8956 110 VELK 113 (333)
Q Consensus 110 ~~~~ 113 (333)
+...
T Consensus 90 a~~~ 93 (103)
T 2dnm_A 90 ARYG 93 (103)
T ss_dssp CSSC
T ss_pred CCcC
Confidence 8533
No 75
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.1e-18 Score=124.49 Aligned_cols=83 Identities=23% Similarity=0.388 Sum_probs=77.2
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeee
Q psy8956 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFV 110 (333)
Q Consensus 32 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~-~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~~ 110 (333)
.+.++|||+|||+.+++++|+++|+.||.|.++.++++. ++.++|||||+|.+.++|.+|++.|++..+.|+.|.|.++
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 456889999999999999999999999999999999986 7889999999999999999999999999999999999998
Q ss_pred ccCC
Q psy8956 111 ELKP 114 (333)
Q Consensus 111 ~~~~ 114 (333)
....
T Consensus 90 ~~~~ 93 (102)
T 2cqb_A 90 KPMR 93 (102)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 5443
No 76
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.78 E-value=1.6e-18 Score=121.92 Aligned_cols=80 Identities=21% Similarity=0.397 Sum_probs=76.3
Q ss_pred ccccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeee
Q psy8956 31 VYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFV 110 (333)
Q Consensus 31 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~~ 110 (333)
....++|||+|||+.+++++|+++|++||.|.++.+..+.++.++|||||+|.+.++|.+|++.|++..+.|+.|.|.++
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence 35668999999999999999999999999999999999988889999999999999999999999999999999999987
No 77
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.78 E-value=1.7e-18 Score=116.04 Aligned_cols=74 Identities=15% Similarity=0.253 Sum_probs=71.3
Q ss_pred ccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecCCcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEecC
Q psy8956 227 RKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSG 300 (333)
Q Consensus 227 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~a~ 300 (333)
.+.-|+|+||++.+++++|+++|.+||+|.++.+...+|||||+|.+.++|.+|++.|||..++|++|+|.+|+
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYLNQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcCCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999995
No 78
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.78 E-value=5.3e-19 Score=129.08 Aligned_cols=105 Identities=23% Similarity=0.376 Sum_probs=90.8
Q ss_pred ccccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeee
Q psy8956 31 VYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFV 110 (333)
Q Consensus 31 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~~ 110 (333)
+...++|||+|||+.+|+++|+++|+.||.|.++.+..+ +.++|||||+|.+.++|.+|++.|+|..+.|+.|.|.++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 82 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT--PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYY 82 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS--TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC--CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 345688999999999999999999999999999999875 445999999999999999999999999999999999988
Q ss_pred ccCCCCCCCCCCCCcccCCCCeEEEeCCCCCCCHHHHHHHhhccCc
Q psy8956 111 ELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156 (333)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~ 156 (333)
...... .+++...+++++.++|+.||.
T Consensus 83 ~~~~~~-------------------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 83 NANRAF-------------------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp CHHHHT-------------------TTSCHHHHHHHHHHHHHHHCC
T ss_pred cCChhh-------------------hhhhHhHhHHHHHHHHHHhCC
Confidence 322211 456677789999999999984
No 79
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=3.7e-18 Score=122.93 Aligned_cols=84 Identities=20% Similarity=0.395 Sum_probs=77.5
Q ss_pred ccccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeC-C-CCCcccEEEEEeCCHHHHHHHHHHh-cCCccCCeeeEE
Q psy8956 31 VYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-K-NDESRGFAIIVFNTPAEAKKARVEM-NGHLIGSKPVII 107 (333)
Q Consensus 31 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~-~-~~~~~g~a~v~f~~~e~A~~al~~l-~~~~~~g~~i~v 107 (333)
..+.++|||+|||+.+++++|+++|+.||.|..+.++++ . ++.++|||||+|.+.++|.+|++.| ++..+.|+.|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 356688999999999999999999999999999999998 4 8889999999999999999999999 999999999999
Q ss_pred eeeccCC
Q psy8956 108 TFVELKP 114 (333)
Q Consensus 108 ~~~~~~~ 114 (333)
.++....
T Consensus 92 ~~a~~~~ 98 (107)
T 2cph_A 92 EWADSEV 98 (107)
T ss_dssp EECCCCC
T ss_pred EeCCCCC
Confidence 9985443
No 80
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=3e-18 Score=122.90 Aligned_cols=83 Identities=16% Similarity=0.282 Sum_probs=77.8
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeee
Q psy8956 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFV 110 (333)
Q Consensus 32 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~-~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~~ 110 (333)
.+.++|||+|||+.+|+++|+++|++||.|..+.+..+. ++.++|||||+|.+.++|.+|++.|++..+.|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 92 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKA 92 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 456889999999999999999999999999999999998 8999999999999999999999999999999999999998
Q ss_pred ccCC
Q psy8956 111 ELKP 114 (333)
Q Consensus 111 ~~~~ 114 (333)
....
T Consensus 93 ~~~~ 96 (105)
T 1x5u_A 93 SAHN 96 (105)
T ss_dssp TTTS
T ss_pred CCCC
Confidence 5443
No 81
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=2e-18 Score=121.18 Aligned_cols=79 Identities=23% Similarity=0.370 Sum_probs=75.0
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeee
Q psy8956 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFV 110 (333)
Q Consensus 32 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~-~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~~ 110 (333)
.+.++|||+|||+.+++++|+++|++||.|.++.+..+. ++.++|||||+|.+.++|.+|++.|++..+.|+.|.|.++
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 456789999999999999999999999999999999988 6889999999999999999999999999999999999986
No 82
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.3e-18 Score=122.77 Aligned_cols=83 Identities=24% Similarity=0.534 Sum_probs=76.9
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhcCCCeeEE-EEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEee
Q psy8956 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDV-RVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITF 109 (333)
Q Consensus 32 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v-~i~~~~-~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~ 109 (333)
.+.++|||+|||+.+++++|+++|+.||.|.++ .++++. ++.++|||||+|.+.++|.+|++.|++..+.|+.|.|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 356889999999999999999999999999999 999985 889999999999999999999999999999999999999
Q ss_pred eccCC
Q psy8956 110 VELKP 114 (333)
Q Consensus 110 ~~~~~ 114 (333)
+..+.
T Consensus 83 a~~~~ 87 (96)
T 1x5t_A 83 AFKKD 87 (96)
T ss_dssp SCCCC
T ss_pred ecccC
Confidence 85443
No 83
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.3e-18 Score=123.53 Aligned_cols=78 Identities=15% Similarity=0.256 Sum_probs=74.0
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeee
Q psy8956 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFV 110 (333)
Q Consensus 32 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~~ 110 (333)
...++|||+|||+++|+++|+++|++||.|.++.++++..+.++|||||+|.+.++|.+|+. +++..+.|+.|.|.+.
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 45688999999999999999999999999999999999888999999999999999999998 8999999999999965
No 84
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2e-18 Score=121.51 Aligned_cols=81 Identities=19% Similarity=0.247 Sum_probs=72.2
Q ss_pred cccccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcC--CccCCeeeEE
Q psy8956 30 KVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNG--HLIGSKPVII 107 (333)
Q Consensus 30 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~--~~~~g~~i~v 107 (333)
.+.+.++|||+|||+.+|+++|+++|++||.|.++.|+++ +|||||+|.+.++|.+|++.|++ ..+.|+.|.|
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~-----kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 86 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 86 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCB
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 3456788999999999999999999999999999999874 89999999999999999998864 6799999999
Q ss_pred eeeccCCC
Q psy8956 108 TFVELKPG 115 (333)
Q Consensus 108 ~~~~~~~~ 115 (333)
.++..+..
T Consensus 87 ~~A~~~~~ 94 (105)
T 1sjq_A 87 QFSNHKEL 94 (105)
T ss_dssp CCCSSSSC
T ss_pred EEcCCCCC
Confidence 99854433
No 85
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.77 E-value=3.7e-18 Score=121.00 Aligned_cols=81 Identities=21% Similarity=0.426 Sum_probs=76.2
Q ss_pred cccccceEEEeCCCCCCCHHHHHHHHhcCCCeeE--------EEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCcc
Q psy8956 30 KVYKENELHVNNLEPSVDNQALINEFKKFGTLRD--------VRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLI 100 (333)
Q Consensus 30 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~--------v~i~~~~-~~~~~g~a~v~f~~~e~A~~al~~l~~~~~ 100 (333)
.+...++|||+|||..+++++|+++|++||.|.. +.+..++ +|.++|||||+|.+.++|.+|++.|+|..+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~ 88 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 88 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe
Confidence 3456688999999999999999999999999999 9999997 899999999999999999999999999999
Q ss_pred CCeeeEEeee
Q psy8956 101 GSKPVIITFV 110 (333)
Q Consensus 101 ~g~~i~v~~~ 110 (333)
.|+.|.|+++
T Consensus 89 ~g~~l~V~~A 98 (99)
T 2la6_A 89 SGNPIKVSFA 98 (99)
T ss_dssp SSSBCEEEEC
T ss_pred CCcEEEEEec
Confidence 9999999986
No 86
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.77 E-value=1.6e-18 Score=116.14 Aligned_cols=72 Identities=21% Similarity=0.308 Sum_probs=68.1
Q ss_pred cceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeee
Q psy8956 34 ENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFV 110 (333)
Q Consensus 34 ~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~~ 110 (333)
+..|+|+||++.+|+++|+++|.+||+|.++++.. ++|||||+|.++++|.+|++.||+..+.|+.|.|.++
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~-----~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL-----NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC-----CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 35699999999999999999999999999999875 6999999999999999999999999999999999976
No 87
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.77 E-value=2.3e-18 Score=127.75 Aligned_cols=86 Identities=24% Similarity=0.385 Sum_probs=79.5
Q ss_pred CCcCcccccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCee
Q psy8956 26 KENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKP 104 (333)
Q Consensus 26 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~-~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~ 104 (333)
.....+.+.++|||+|||+.+++++|+++|++||.|..+.+.++. ++.++|||||+|.+.++|.+|++.|+|..+.|+.
T Consensus 38 ~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~ 117 (129)
T 2kxn_B 38 GNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRR 117 (129)
T ss_dssp CCSSCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSC
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 334455678899999999999999999999999999999999987 7889999999999999999999999999999999
Q ss_pred eEEeeec
Q psy8956 105 VIITFVE 111 (333)
Q Consensus 105 i~v~~~~ 111 (333)
|.|.++.
T Consensus 118 l~V~~a~ 124 (129)
T 2kxn_B 118 IRVDFSI 124 (129)
T ss_dssp CEESCCS
T ss_pred EEEEEec
Confidence 9999884
No 88
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.77 E-value=4e-18 Score=122.50 Aligned_cols=84 Identities=15% Similarity=0.333 Sum_probs=77.2
Q ss_pred ccccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCcc---CCeeeE
Q psy8956 31 VYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLI---GSKPVI 106 (333)
Q Consensus 31 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~-~~~~~g~a~v~f~~~e~A~~al~~l~~~~~---~g~~i~ 106 (333)
..+.++|||+|||..+++++|+++|++||.|.++.++.+. ++.++|||||+|.+.++|.+|++.|++..+ .|+.|.
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 3556889999999999999999999999999999999988 789999999999999999999999999987 889999
Q ss_pred EeeeccCC
Q psy8956 107 ITFVELKP 114 (333)
Q Consensus 107 v~~~~~~~ 114 (333)
|.++....
T Consensus 90 v~~a~~~~ 97 (106)
T 2dgp_A 90 VKPADSES 97 (106)
T ss_dssp EEECCCCS
T ss_pred EEECCccc
Confidence 99985433
No 89
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.77 E-value=3.8e-18 Score=123.45 Aligned_cols=83 Identities=17% Similarity=0.378 Sum_probs=77.7
Q ss_pred ccccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEee
Q psy8956 31 VYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITF 109 (333)
Q Consensus 31 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~-~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~ 109 (333)
..+.++|||+|||+.+|+++|+++|+.||.|.++.+..+. ++.++|||||+|.+.++|.+|+..|+|..+.|+.|.|.+
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 4567899999999999999999999999999999999987 889999999999999999999999999999999999998
Q ss_pred eccC
Q psy8956 110 VELK 113 (333)
Q Consensus 110 ~~~~ 113 (333)
+..+
T Consensus 103 a~~~ 106 (110)
T 1oo0_B 103 CFVK 106 (110)
T ss_dssp SEES
T ss_pred cccC
Confidence 8543
No 90
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=6.9e-18 Score=119.60 Aligned_cols=84 Identities=24% Similarity=0.453 Sum_probs=77.8
Q ss_pred CCCCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecCCcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEecCCC
Q psy8956 223 LQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302 (333)
Q Consensus 223 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~a~~~ 302 (333)
....+.++|||+|||..+++++|+++|++||.|..+.+..++++|||+|.+.++|.+|++.|||..|+|+.|+|.+++.+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 89 (99)
T 2cpj_A 10 KTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHS 89 (99)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCC
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCC
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCC
Q psy8956 303 PGVS 306 (333)
Q Consensus 303 ~~~~ 306 (333)
....
T Consensus 90 ~~~~ 93 (99)
T 2cpj_A 90 ASLT 93 (99)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 5443
No 91
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=6.1e-18 Score=122.64 Aligned_cols=83 Identities=23% Similarity=0.367 Sum_probs=77.3
Q ss_pred ccccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhc------CCccCCe
Q psy8956 31 VYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMN------GHLIGSK 103 (333)
Q Consensus 31 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~-~~~~~g~a~v~f~~~e~A~~al~~l~------~~~~~g~ 103 (333)
..+.++|||+|||+.+|+++|+++|..||.|.++.+.++. ++.++|||||+|.+.++|.+|++.|+ +..+.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~ 91 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGR 91 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCE
Confidence 4567889999999999999999999999999999999997 78899999999999999999999999 9999999
Q ss_pred eeEEeeeccC
Q psy8956 104 PVIITFVELK 113 (333)
Q Consensus 104 ~i~v~~~~~~ 113 (333)
.|.|.++..+
T Consensus 92 ~l~v~~a~~~ 101 (111)
T 1x4h_A 92 QLKVDLAVTR 101 (111)
T ss_dssp EEEEECCCCC
T ss_pred EEEEEECCCC
Confidence 9999988543
No 92
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.77 E-value=4.1e-18 Score=122.64 Aligned_cols=82 Identities=30% Similarity=0.425 Sum_probs=77.8
Q ss_pred CcccccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEe
Q psy8956 29 NKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIIT 108 (333)
Q Consensus 29 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~ 108 (333)
....+.++|||+|||+.+|+++|+++|+.||.|.++.+..+.++.++|||||+|.+.++|.+|++.|+|..+.|+.|.|.
T Consensus 24 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 103 (107)
T 3ulh_A 24 AGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQ 103 (107)
T ss_dssp CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34467789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ee
Q psy8956 109 FV 110 (333)
Q Consensus 109 ~~ 110 (333)
++
T Consensus 104 ~a 105 (107)
T 3ulh_A 104 LV 105 (107)
T ss_dssp EE
T ss_pred Ee
Confidence 87
No 93
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.77 E-value=1.3e-17 Score=123.32 Aligned_cols=84 Identities=29% Similarity=0.396 Sum_probs=78.9
Q ss_pred cccccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEee
Q psy8956 30 KVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITF 109 (333)
Q Consensus 30 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~ 109 (333)
...+.++|||+|||+.+++++|+++|+.||.|.++.+..+.++.++|||||+|.+.++|.+|++.|+|..+.|+.|.|.+
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 45677899999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred eccC
Q psy8956 110 VELK 113 (333)
Q Consensus 110 ~~~~ 113 (333)
+...
T Consensus 111 a~~~ 114 (124)
T 2kt5_A 111 VASQ 114 (124)
T ss_dssp ECCT
T ss_pred eCCC
Confidence 8543
No 94
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=8.3e-18 Score=120.13 Aligned_cols=83 Identities=19% Similarity=0.301 Sum_probs=75.7
Q ss_pred ccccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeee
Q psy8956 31 VYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFV 110 (333)
Q Consensus 31 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~~ 110 (333)
....++|||+|||+.+++++|+++|++||.|.++.+.++..+ ++|||||+|.+.++|.+|++.|++..+.|+.|.|.++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS-NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA 90 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS-SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC-CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEEC
Confidence 355688999999999999999999999999999999998644 6899999999999999999999999999999999998
Q ss_pred ccCC
Q psy8956 111 ELKP 114 (333)
Q Consensus 111 ~~~~ 114 (333)
..+.
T Consensus 91 ~~~~ 94 (103)
T 2cqi_A 91 TTPS 94 (103)
T ss_dssp CCTT
T ss_pred CCCc
Confidence 5433
No 95
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=3.6e-18 Score=120.86 Aligned_cols=84 Identities=24% Similarity=0.442 Sum_probs=75.8
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCCC--C--CcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEE
Q psy8956 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKN--D--ESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVII 107 (333)
Q Consensus 32 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~~--~--~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v 107 (333)
.+.++|||+|||+.+++++|+++|+.||.|..+.+..+.. | .++|||||+|.+.++|.+|++.|++..+.|+.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 3457899999999999999999999999999999998763 3 78999999999999999999999999999999999
Q ss_pred eeeccCCC
Q psy8956 108 TFVELKPG 115 (333)
Q Consensus 108 ~~~~~~~~ 115 (333)
.++.....
T Consensus 83 ~~a~~~~~ 90 (98)
T 2cpf_A 83 RISERATK 90 (98)
T ss_dssp ECSSCSSC
T ss_pred EEccCCCC
Confidence 99854443
No 96
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.77 E-value=9.5e-19 Score=121.67 Aligned_cols=78 Identities=17% Similarity=0.306 Sum_probs=70.5
Q ss_pred cceEEEecCCCCCCHHHHHHHhhccC-CeeEEEeecC------CcEEEEEECCHHHHHHHHHHhC-CCeeCCeeEEEEec
Q psy8956 228 KNKIFVANLPSNINNSEFEELFARFG-TITSSSLVSD------KHIGFIEFIMPKHATHAVSTMN-GHVFKSKPLKVTLS 299 (333)
Q Consensus 228 ~~~l~v~nl~~~~~~~~l~~~f~~~g-~v~~v~i~~~------~~~~fV~f~~~~~A~~a~~~l~-g~~l~g~~l~v~~a 299 (333)
+++|||+|||..+++++|+++|++|| .|..|+++.+ +|||||+|.+.++|.+|++.++ +..++|++|.|.+|
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 46899999999999999999999999 7999999865 7899999999999999999875 56799999999999
Q ss_pred CCCCCC
Q psy8956 300 GTKPGV 305 (333)
Q Consensus 300 ~~~~~~ 305 (333)
.+++..
T Consensus 81 ~~~~~~ 86 (91)
T 2lxi_A 81 DPKPKI 86 (91)
T ss_dssp CSCCCC
T ss_pred CCCCCC
Confidence 886543
No 97
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=1.5e-17 Score=121.22 Aligned_cols=80 Identities=25% Similarity=0.373 Sum_probs=76.3
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeec
Q psy8956 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVE 111 (333)
Q Consensus 32 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~~~ 111 (333)
.+.++|||+|||+.+++++|+++|..||.|.++.+..+.++.++|||||+|.+.++|.+|++.|++..+.|+.|.|.++.
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 92 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDE 92 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEcc
Confidence 45678999999999999999999999999999999999989999999999999999999999999999999999999884
No 98
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=5.7e-18 Score=121.23 Aligned_cols=83 Identities=31% Similarity=0.486 Sum_probs=77.4
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhc-CCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCc-cCCeeeEEee
Q psy8956 32 YKENELHVNNLEPSVDNQALINEFKK-FGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHL-IGSKPVIITF 109 (333)
Q Consensus 32 ~~~~~l~V~nLp~~~t~~~l~~~f~~-~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~-~~g~~i~v~~ 109 (333)
.+.++|||+|||+.+|+++|+++|.. ||.|.++.++.+.++.++|||||+|.+.++|.+|++.|++.. +.|+.|.|.+
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~ 86 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSV 86 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCB
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEE
Confidence 45678999999999999999999999 999999999999989999999999999999999999999999 9999999998
Q ss_pred eccCC
Q psy8956 110 VELKP 114 (333)
Q Consensus 110 ~~~~~ 114 (333)
+..+.
T Consensus 87 a~~~~ 91 (104)
T 2dhg_A 87 AIPKA 91 (104)
T ss_dssp CCCCC
T ss_pred ccCCC
Confidence 84433
No 99
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=8.4e-18 Score=119.21 Aligned_cols=83 Identities=29% Similarity=0.544 Sum_probs=76.6
Q ss_pred CCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC------CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEe
Q psy8956 225 PARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTL 298 (333)
Q Consensus 225 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~------~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~ 298 (333)
..+.++|||+|||..+++++|+++|++||.|..+.+..+ +++|||+|.+.++|.+|++.|||..|+|++|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 346789999999999999999999999999999999876 58999999999999999999999999999999999
Q ss_pred cCCCCCCCC
Q psy8956 299 SGTKPGVSI 307 (333)
Q Consensus 299 a~~~~~~~~ 307 (333)
++.+.....
T Consensus 85 a~~~~~~~~ 93 (99)
T 1whw_A 85 STIKKEASQ 93 (99)
T ss_dssp CCCCSTTCC
T ss_pred cCCCccccc
Confidence 999876543
No 100
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.76 E-value=7.7e-18 Score=120.25 Aligned_cols=82 Identities=24% Similarity=0.385 Sum_probs=75.7
Q ss_pred ccccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEee
Q psy8956 31 VYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITF 109 (333)
Q Consensus 31 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~-~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~ 109 (333)
..+.++|||+|||+.+++++|+++|..|| |.++.++++. ++.++|||||+|.+.++|.+|+ .|++..+.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDI 89 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEE
Confidence 34568999999999999999999999997 9999999998 7899999999999999999999 8999999999999999
Q ss_pred eccCC
Q psy8956 110 VELKP 114 (333)
Q Consensus 110 ~~~~~ 114 (333)
+....
T Consensus 90 a~~~~ 94 (103)
T 2dng_A 90 AEGRK 94 (103)
T ss_dssp CCCCC
T ss_pred ecCCC
Confidence 85443
No 101
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.76 E-value=1.1e-18 Score=123.83 Aligned_cols=80 Identities=18% Similarity=0.277 Sum_probs=75.5
Q ss_pred cccceEEEeCCCC------CCCHHHHHHHHhcCCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCC-e
Q psy8956 32 YKENELHVNNLEP------SVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGS-K 103 (333)
Q Consensus 32 ~~~~~l~V~nLp~------~~t~~~l~~~f~~~g~v~~v~i~~~~-~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g-~ 103 (333)
..+++|||+|||. .+++++|+++|++||.|.++.|+++. +|.++|||||+|.+.++|.+|++.|+|..+.| +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 3457899999999 99999999999999999999999998 69999999999999999999999999999999 9
Q ss_pred eeEEeeec
Q psy8956 104 PVIITFVE 111 (333)
Q Consensus 104 ~i~v~~~~ 111 (333)
.|.|.++.
T Consensus 84 ~l~V~~a~ 91 (100)
T 3ns6_A 84 RLFLYTMK 91 (100)
T ss_dssp BCEEEESH
T ss_pred EEEEEECc
Confidence 99999874
No 102
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.76 E-value=6.3e-18 Score=118.13 Aligned_cols=80 Identities=20% Similarity=0.319 Sum_probs=74.7
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeec
Q psy8956 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVE 111 (333)
Q Consensus 32 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~~~ 111 (333)
.+.++|||+|||+.+++++|+++|++||.|..+.+.++ ++.++|||||+|.+.++|.+|++.|++..+.|+.|.|+++.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~-~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 84 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDR 84 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES-SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc-CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 45678999999999999999999999999999999985 77899999999999999999999999999999999999884
Q ss_pred c
Q psy8956 112 L 112 (333)
Q Consensus 112 ~ 112 (333)
.
T Consensus 85 ~ 85 (92)
T 2dgv_A 85 N 85 (92)
T ss_dssp C
T ss_pred C
Confidence 3
No 103
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.76 E-value=2.1e-18 Score=129.07 Aligned_cols=120 Identities=15% Similarity=0.248 Sum_probs=77.5
Q ss_pred EEEEEeCCHHHHHHHHHHhCCceeccceeEEEeeeecCCCccCCCCCCCCCCCCccceEEEecCCCCCCHHHHHHHhhcc
Q psy8956 173 FGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARF 252 (333)
Q Consensus 173 ~~~v~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~ 252 (333)
+.|.+|.+...+..|+..+++....+..-. ....+.....+.++|||+|||..+++++|+++|++|
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g~~~~--------------~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~ 71 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMGRGSM--------------SYGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKY 71 (135)
T ss_dssp -----------------------------C--------------CSCCSCSSGGGCCCEEEECCCSSCHHHHHHHHHGGG
T ss_pred cccccccCCCchhhhhhhccCCCCCCCCCC--------------CcCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhc
Confidence 667888888888899888877664443310 011223344567899999999999999999999999
Q ss_pred CCeeEEEeecC------CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEecCCCCCCC
Q psy8956 253 GTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKPGVS 306 (333)
Q Consensus 253 g~v~~v~i~~~------~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~a~~~~~~~ 306 (333)
|.|..+.+..+ +++|||+|.+.++|.+|++.|||..|+|+.|+|.+++.+....
T Consensus 72 G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~~~ 131 (135)
T 2lea_A 72 GRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPD 131 (135)
T ss_dssp SCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCCCT
T ss_pred CCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCCCc
Confidence 99999999865 6799999999999999999999999999999999998865443
No 104
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.3e-17 Score=117.60 Aligned_cols=83 Identities=16% Similarity=0.191 Sum_probs=72.3
Q ss_pred CcccccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhc--CCccCCeeeE
Q psy8956 29 NKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN--GHLIGSKPVI 106 (333)
Q Consensus 29 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~--~~~~~g~~i~ 106 (333)
....+.++|||+|||+.+++++|+++|++||.|.++.++++ +|||||+|.+.++|.+|++.|+ +..+.|+.|.
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 84 (101)
T 2cq1_A 10 MDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG-----KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIY 84 (101)
T ss_dssp CCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhccCCceECCcEEE
Confidence 33456789999999999999999999999999999988864 8999999999999999999775 5679999999
Q ss_pred EeeeccCCCC
Q psy8956 107 ITFVELKPGQ 116 (333)
Q Consensus 107 v~~~~~~~~~ 116 (333)
|.++......
T Consensus 85 V~~a~~~~~~ 94 (101)
T 2cq1_A 85 IQYSNHKELK 94 (101)
T ss_dssp EEECSCSSCC
T ss_pred EEEcCcccCc
Confidence 9999544433
No 105
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.7e-17 Score=118.45 Aligned_cols=85 Identities=22% Similarity=0.422 Sum_probs=77.5
Q ss_pred CCCCCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC----CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEE
Q psy8956 222 LLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVT 297 (333)
Q Consensus 222 ~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~----~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~ 297 (333)
.....+.++|||+|||..+++++|+++|++||.|..|.+..+ +++|||+|.+.++|.+|++.|||..|+|+.|+|.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2cqi_A 9 MEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVN 88 (103)
T ss_dssp CCCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEE
Confidence 334567799999999999999999999999999999999885 7899999999999999999999999999999999
Q ss_pred ecCCCCCCC
Q psy8956 298 LSGTKPGVS 306 (333)
Q Consensus 298 ~a~~~~~~~ 306 (333)
+++.+....
T Consensus 89 ~a~~~~~~~ 97 (103)
T 2cqi_A 89 WATTPSSQK 97 (103)
T ss_dssp ECCCTTCCC
T ss_pred ECCCCcccc
Confidence 999866443
No 106
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.4e-17 Score=117.74 Aligned_cols=84 Identities=19% Similarity=0.439 Sum_probs=77.4
Q ss_pred CCCCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC----CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEe
Q psy8956 223 LQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTL 298 (333)
Q Consensus 223 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~----~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~ 298 (333)
....+.++|||+|||..+++++|+++|++||.|..|.+..+ +++|||+|.+.++|.+|++.|||..|+|+.|+|.+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 89 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 89 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34556799999999999999999999999999999999877 78999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q psy8956 299 SGTKPGVS 306 (333)
Q Consensus 299 a~~~~~~~ 306 (333)
++.+....
T Consensus 90 a~~~~~~~ 97 (103)
T 2cq3_A 90 ATARVMTN 97 (103)
T ss_dssp CCSSCCCC
T ss_pred cccCCCCC
Confidence 99876543
No 107
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.76 E-value=5.7e-18 Score=121.87 Aligned_cols=79 Identities=10% Similarity=0.195 Sum_probs=73.7
Q ss_pred CccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC------CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEec
Q psy8956 226 ARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299 (333)
Q Consensus 226 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~------~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~a 299 (333)
++.++|||+|||..+++++|+++|++||.|..+.++.+ +|+|||+|.+.++|.+|++.|||..|+|+.|+|.+|
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 46789999999999999999999999999999999876 679999999999999999999999999999999999
Q ss_pred CCCCC
Q psy8956 300 GTKPG 304 (333)
Q Consensus 300 ~~~~~ 304 (333)
.....
T Consensus 84 ~~~~~ 88 (110)
T 3s8s_A 84 IKGQQ 88 (110)
T ss_dssp STTHH
T ss_pred CCCcH
Confidence 76543
No 108
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=4.2e-18 Score=120.76 Aligned_cols=80 Identities=21% Similarity=0.400 Sum_probs=75.5
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhcCCCee-EEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCee----e
Q psy8956 32 YKENELHVNNLEPSVDNQALINEFKKFGTLR-DVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKP----V 105 (333)
Q Consensus 32 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~-~v~i~~~~-~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~----i 105 (333)
...++|||+|||+.+++++|+++|++||.|. ++.+++++ ++.++|||||+|.+.++|.+|++.|+|..+.|+. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 4568899999999999999999999999999 99999998 8899999999999999999999999999999999 9
Q ss_pred EEeeec
Q psy8956 106 IITFVE 111 (333)
Q Consensus 106 ~v~~~~ 111 (333)
.|.++.
T Consensus 87 ~v~~a~ 92 (99)
T 2div_A 87 KLNYAT 92 (99)
T ss_dssp CEEETT
T ss_pred EEeecC
Confidence 998883
No 109
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=4.3e-18 Score=119.87 Aligned_cols=76 Identities=17% Similarity=0.202 Sum_probs=69.5
Q ss_pred cccceEEEeCCCC-CCCHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCC--ccCCeeeEEe
Q psy8956 32 YKENELHVNNLEP-SVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH--LIGSKPVIIT 108 (333)
Q Consensus 32 ~~~~~l~V~nLp~-~~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~--~~~g~~i~v~ 108 (333)
.++++|||+|||+ .+|+++|+++|++||.|.++.|+++ +|||||+|.+.++|.+|++.|++. .+.|+.|.|.
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 87 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK-----INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVH 87 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS-----SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEE
Confidence 4678899999999 9999999999999999999999864 689999999999999999999865 4999999999
Q ss_pred eecc
Q psy8956 109 FVEL 112 (333)
Q Consensus 109 ~~~~ 112 (333)
++..
T Consensus 88 ~a~~ 91 (102)
T 1x4d_A 88 LSQK 91 (102)
T ss_dssp EECC
T ss_pred ECCC
Confidence 9953
No 110
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.1e-17 Score=120.91 Aligned_cols=85 Identities=18% Similarity=0.244 Sum_probs=74.2
Q ss_pred CcCcccccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcC--CccCCee
Q psy8956 27 ENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNG--HLIGSKP 104 (333)
Q Consensus 27 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~--~~~~g~~ 104 (333)
......+.++|||+|||+.+|+++|+++|++||.|.++.++++ +|||||+|.+.++|.+|++.|++ ..+.|+.
T Consensus 24 ~~~~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~-----kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~ 98 (119)
T 2ad9_A 24 SRSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQP 98 (119)
T ss_dssp TTSCSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG-----GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBC
T ss_pred ccccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhccCCceECCeE
Confidence 3344567789999999999999999999999999999999874 89999999999999999998874 5799999
Q ss_pred eEEeeeccCCCC
Q psy8956 105 VIITFVELKPGQ 116 (333)
Q Consensus 105 i~v~~~~~~~~~ 116 (333)
|.|.++..+...
T Consensus 99 l~V~~a~~k~~~ 110 (119)
T 2ad9_A 99 IYIQFSNHKELK 110 (119)
T ss_dssp CEEEECSSSSCC
T ss_pred EEEEEccCCCCC
Confidence 999999544433
No 111
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.76 E-value=2.7e-17 Score=119.92 Aligned_cols=85 Identities=25% Similarity=0.486 Sum_probs=77.7
Q ss_pred CCCCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC------CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEE
Q psy8956 223 LQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296 (333)
Q Consensus 223 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~------~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v 296 (333)
....+.++|||+|||..+++++|+++|++||.|..|.+..+ +++|||+|.+.++|.+|++.|||..|+|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (115)
T 2dgo_A 10 KDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRT 89 (115)
T ss_dssp CCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34556789999999999999999999999999999999876 679999999999999999999999999999999
Q ss_pred EecCCCCCCCC
Q psy8956 297 TLSGTKPGVSI 307 (333)
Q Consensus 297 ~~a~~~~~~~~ 307 (333)
.+++.+.....
T Consensus 90 ~~a~~~~~~~~ 100 (115)
T 2dgo_A 90 NWATRKPPAPK 100 (115)
T ss_dssp EESSCCCCCSC
T ss_pred EEccCCCCCCc
Confidence 99998766543
No 112
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=7.1e-18 Score=117.56 Aligned_cols=81 Identities=14% Similarity=0.217 Sum_probs=75.5
Q ss_pred ccccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeee
Q psy8956 31 VYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFV 110 (333)
Q Consensus 31 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~~ 110 (333)
....++|||+|||+++++++|+++|+.| .|.++.++++.+|.++|||||+|.+.++|.+|++ |++..+.|+.|.|.++
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFRE 84 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEEC
Confidence 3556889999999999999999999999 8999999999889999999999999999999999 9999999999999998
Q ss_pred ccC
Q psy8956 111 ELK 113 (333)
Q Consensus 111 ~~~ 113 (333)
...
T Consensus 85 ~~~ 87 (91)
T 2dgw_A 85 KSG 87 (91)
T ss_dssp SSC
T ss_pred CcC
Confidence 433
No 113
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.1e-17 Score=120.81 Aligned_cols=82 Identities=18% Similarity=0.436 Sum_probs=76.9
Q ss_pred CCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecCCcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEecCCCCC
Q psy8956 225 PARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKPG 304 (333)
Q Consensus 225 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~a~~~~~ 304 (333)
....++|||+|||..+++++|+++|++||.|..+.+..++++|||+|.+.++|.+|++.|||..|+|+.|+|.+++.+..
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 101 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPD 101 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCCCS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCCCC
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred CC
Q psy8956 305 VS 306 (333)
Q Consensus 305 ~~ 306 (333)
..
T Consensus 102 ~~ 103 (109)
T 1x4g_A 102 MT 103 (109)
T ss_dssp SC
T ss_pred CC
Confidence 44
No 114
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.76 E-value=4.5e-18 Score=118.15 Aligned_cols=79 Identities=16% Similarity=0.323 Sum_probs=74.9
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeee
Q psy8956 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFV 110 (333)
Q Consensus 32 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~-~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~~ 110 (333)
...++|||+|||+.+++++|+++|+.||.|.++.+..+. ++.++|||||+|.+.++|.+|+ .|+|..+.|+.|.|.++
T Consensus 4 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a 82 (89)
T 3ucg_A 4 ADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPK 82 (89)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEET
T ss_pred CcCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEc
Confidence 346889999999999999999999999999999999997 8999999999999999999999 99999999999999988
Q ss_pred c
Q psy8956 111 E 111 (333)
Q Consensus 111 ~ 111 (333)
.
T Consensus 83 ~ 83 (89)
T 3ucg_A 83 R 83 (89)
T ss_dssp T
T ss_pred c
Confidence 3
No 115
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=1.2e-17 Score=117.80 Aligned_cols=81 Identities=21% Similarity=0.415 Sum_probs=76.1
Q ss_pred CCCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecCCcEEEEEECCHHHHHHHHHHhCCCeeC--CeeEEEEecCC
Q psy8956 224 QPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKHIGFIEFIMPKHATHAVSTMNGHVFK--SKPLKVTLSGT 301 (333)
Q Consensus 224 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~~~~~fV~f~~~~~A~~a~~~l~g~~l~--g~~l~v~~a~~ 301 (333)
...+.++|||+|||..+++++|+++|++||.|..+.+..++++|||+|.+.++|.+|++.|||..++ |+.|+|.++++
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~ 92 (97)
T 1why_A 13 KANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKS 92 (97)
T ss_dssp CCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSSSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCCCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCC
Confidence 3456789999999999999999999999999999999988999999999999999999999999999 99999999998
Q ss_pred CCC
Q psy8956 302 KPG 304 (333)
Q Consensus 302 ~~~ 304 (333)
++.
T Consensus 93 ~~~ 95 (97)
T 1why_A 93 GPS 95 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
No 116
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=7.5e-18 Score=120.30 Aligned_cols=82 Identities=24% Similarity=0.282 Sum_probs=74.6
Q ss_pred CCCccceEEEecCCCC-CCHHHHHHHhhccCCeeEEEeecCCcEEEEEECCHHHHHHHHHHhCC--CeeCCeeEEEEecC
Q psy8956 224 QPARKNKIFVANLPSN-INNSEFEELFARFGTITSSSLVSDKHIGFIEFIMPKHATHAVSTMNG--HVFKSKPLKVTLSG 300 (333)
Q Consensus 224 ~~~~~~~l~v~nl~~~-~~~~~l~~~f~~~g~v~~v~i~~~~~~~fV~f~~~~~A~~a~~~l~g--~~l~g~~l~v~~a~ 300 (333)
...++++|||+|||.. +++++|+++|++||.|..|.+.+.+++|||+|.+.++|.+|++.|++ ..|+|++|.|.+|+
T Consensus 21 ~~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~ 100 (112)
T 1x4f_A 21 KQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSE 100 (112)
T ss_dssp SSCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEEC
T ss_pred cCCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECc
Confidence 3557899999999998 99999999999999999999999999999999999999999998864 56999999999998
Q ss_pred CCCCC
Q psy8956 301 TKPGV 305 (333)
Q Consensus 301 ~~~~~ 305 (333)
.+...
T Consensus 101 ~~~~~ 105 (112)
T 1x4f_A 101 KYKKL 105 (112)
T ss_dssp SCSSS
T ss_pred ccccc
Confidence 76543
No 117
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.75 E-value=4.1e-18 Score=118.06 Aligned_cols=79 Identities=25% Similarity=0.503 Sum_probs=73.4
Q ss_pred ccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCC-CCC-cccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeee
Q psy8956 33 KENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDE-SRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFV 110 (333)
Q Consensus 33 ~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~-~~~-~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~~ 110 (333)
+.++|||+|||+++|+++|+++|++||.|.++.+..+. ++. ++|+|||+|.+.++|.+|++.|+|..+.|+.|.|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 45789999999999999999999999999999998887 444 8999999999999999999999999999999999988
Q ss_pred c
Q psy8956 111 E 111 (333)
Q Consensus 111 ~ 111 (333)
.
T Consensus 83 ~ 83 (88)
T 4a8x_A 83 L 83 (88)
T ss_dssp C
T ss_pred C
Confidence 3
No 118
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.2e-17 Score=121.96 Aligned_cols=83 Identities=19% Similarity=0.335 Sum_probs=76.7
Q ss_pred ccccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEee
Q psy8956 31 VYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITF 109 (333)
Q Consensus 31 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~-~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~ 109 (333)
....++|||+|||+.+|+++|+++|++||.|.++.++++. ++.++|||||+|.+.++|.+|++.+++ .+.|+.|.|.+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~ 92 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNL 92 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEE
Confidence 3566899999999999999999999999999999999987 789999999999999999999999998 89999999999
Q ss_pred eccCC
Q psy8956 110 VELKP 114 (333)
Q Consensus 110 ~~~~~ 114 (333)
+....
T Consensus 93 a~~~~ 97 (116)
T 2cqd_A 93 AYLGA 97 (116)
T ss_dssp STTTC
T ss_pred cccCC
Confidence 85443
No 119
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=1.6e-17 Score=116.85 Aligned_cols=81 Identities=26% Similarity=0.455 Sum_probs=75.6
Q ss_pred CccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC------CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEec
Q psy8956 226 ARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299 (333)
Q Consensus 226 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~------~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~a 299 (333)
.++++|||+|||..+++++|+++|++||.|..+.+..+ +++|||+|.+.++|.+|++.|||..|+|++|+|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 46689999999999999999999999999999999876 679999999999999999999999999999999999
Q ss_pred CCCCCCC
Q psy8956 300 GTKPGVS 306 (333)
Q Consensus 300 ~~~~~~~ 306 (333)
+.+....
T Consensus 83 ~~~~~~~ 89 (95)
T 2dnz_A 83 TERLDGG 89 (95)
T ss_dssp SCCCCCC
T ss_pred ccccCCC
Confidence 9876654
No 120
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.75 E-value=6.3e-18 Score=123.93 Aligned_cols=83 Identities=23% Similarity=0.374 Sum_probs=77.3
Q ss_pred cCcccccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeE
Q psy8956 28 NNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVI 106 (333)
Q Consensus 28 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~-~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~ 106 (333)
.....+.++|||+|||+++++++|+++|++||.|.++.+..+. ++.++|||||+|.+.++|.+|++.|+|..+.|+.|.
T Consensus 34 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 113 (118)
T 2khc_A 34 QIEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLK 113 (118)
T ss_dssp SCCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 3445667899999999999999999999999999999999987 789999999999999999999999999999999999
Q ss_pred Eeee
Q psy8956 107 ITFV 110 (333)
Q Consensus 107 v~~~ 110 (333)
|+++
T Consensus 114 V~~a 117 (118)
T 2khc_A 114 VQLK 117 (118)
T ss_dssp EEEC
T ss_pred EEec
Confidence 9976
No 121
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=8.7e-18 Score=118.24 Aligned_cols=79 Identities=16% Similarity=0.297 Sum_probs=73.3
Q ss_pred cccceEEEeCCCCCCCHHHHH----HHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEE
Q psy8956 32 YKENELHVNNLEPSVDNQALI----NEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVII 107 (333)
Q Consensus 32 ~~~~~l~V~nLp~~~t~~~l~----~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v 107 (333)
...++|||+|||+.+++++|+ ++|++||.|.++.+..+..+ +|||||+|.+.++|.+|++.|+|..+.|+.|.|
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~--rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V 84 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY--QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILV 84 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST--TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC--CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 345789999999999999999 99999999999999988755 899999999999999999999999999999999
Q ss_pred eeecc
Q psy8956 108 TFVEL 112 (333)
Q Consensus 108 ~~~~~ 112 (333)
.++..
T Consensus 85 ~~a~~ 89 (96)
T 2dgx_A 85 SLATG 89 (96)
T ss_dssp EECCC
T ss_pred EEcCC
Confidence 99843
No 122
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.5e-17 Score=118.80 Aligned_cols=84 Identities=25% Similarity=0.412 Sum_probs=77.0
Q ss_pred CCCCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC------CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEE
Q psy8956 223 LQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296 (333)
Q Consensus 223 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~------~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v 296 (333)
....+.++|||+|||..+++++|+++|++||.|..|.+..+ +++|||+|.+.++|.+|++.|||..|+|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (103)
T 2cq0_A 10 RRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNV 89 (103)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 34567799999999999999999999999999999999876 579999999999999999999999999999999
Q ss_pred EecCCCCCCC
Q psy8956 297 TLSGTKPGVS 306 (333)
Q Consensus 297 ~~a~~~~~~~ 306 (333)
.+++.+....
T Consensus 90 ~~a~~~~~~~ 99 (103)
T 2cq0_A 90 EWAKPSTNSG 99 (103)
T ss_dssp EESSCCCCSC
T ss_pred EECCCCCCCC
Confidence 9999876554
No 123
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=9.9e-18 Score=115.29 Aligned_cols=77 Identities=21% Similarity=0.396 Sum_probs=73.0
Q ss_pred CCCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecCCcEEEEEECCHHHHHHHHHHh-CCCeeCCeeEEEEecC
Q psy8956 224 QPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKHIGFIEFIMPKHATHAVSTM-NGHVFKSKPLKVTLSG 300 (333)
Q Consensus 224 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~~~~~fV~f~~~~~A~~a~~~l-~g~~l~g~~l~v~~a~ 300 (333)
...+.++|||+|||..+++++|+++|++||.|..+.+..++++|||+|.+.++|.+|++.| +|..++|++|+|.||+
T Consensus 8 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 8 EDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp SCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECCCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 3456789999999999999999999999999999999999999999999999999999999 9999999999999985
No 124
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.3e-17 Score=118.97 Aligned_cols=83 Identities=22% Similarity=0.404 Sum_probs=76.6
Q ss_pred CCCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC------CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEE
Q psy8956 224 QPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVT 297 (333)
Q Consensus 224 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~------~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~ 297 (333)
...+.++|||+|||..+++++|+++|++||.|..+.++.+ +++|||+|.+.++|.+|++.|||..|+|+.|+|.
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 87 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 3456789999999999999999999999999999999765 7899999999999999999999999999999999
Q ss_pred ecCCCCCCC
Q psy8956 298 LSGTKPGVS 306 (333)
Q Consensus 298 ~a~~~~~~~ 306 (333)
+++++....
T Consensus 88 ~a~~~~~~~ 96 (102)
T 2cqb_A 88 LAKPMRIKE 96 (102)
T ss_dssp ECCCCCCCC
T ss_pred eCCCCCCCC
Confidence 999876554
No 125
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=8.3e-18 Score=122.29 Aligned_cols=84 Identities=21% Similarity=0.338 Sum_probs=77.2
Q ss_pred ccccceEEEeCCCCCCCHHHHHHHHhcCCCee--------EEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccC
Q psy8956 31 VYKENELHVNNLEPSVDNQALINEFKKFGTLR--------DVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIG 101 (333)
Q Consensus 31 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~--------~v~i~~~~-~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~ 101 (333)
..+.++|||+|||+.+|+++|+++|+.||.|. .+.+..+. ++.++|||||+|.+.++|.+|++.|++..+.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 35568999999999999999999999999998 69999986 8999999999999999999999999999999
Q ss_pred CeeeEEeeeccCC
Q psy8956 102 SKPVIITFVELKP 114 (333)
Q Consensus 102 g~~i~v~~~~~~~ 114 (333)
|+.|.|.++..+.
T Consensus 92 g~~l~V~~a~~~~ 104 (113)
T 2cpe_A 92 GSKLKVSLARKKP 104 (113)
T ss_dssp TEECEEECSSCCC
T ss_pred CCEEEEEECCCCC
Confidence 9999999885433
No 126
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.75 E-value=8.2e-18 Score=116.23 Aligned_cols=79 Identities=22% Similarity=0.332 Sum_probs=72.8
Q ss_pred ccccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEee
Q psy8956 31 VYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITF 109 (333)
Q Consensus 31 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~-~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~ 109 (333)
..+.++|||+|||+.+++++|+++|++||.|.++.++.+. ++.++|||||+|.+.++|.+|++ +++..+.|+.|.|++
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKK 86 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEe
Confidence 3566889999999999999999999999999999999997 79999999999999999999995 588889999999986
Q ss_pred e
Q psy8956 110 V 110 (333)
Q Consensus 110 ~ 110 (333)
+
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 4
No 127
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=2.1e-17 Score=117.09 Aligned_cols=82 Identities=30% Similarity=0.525 Sum_probs=75.3
Q ss_pred CCCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC------CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEE
Q psy8956 224 QPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVT 297 (333)
Q Consensus 224 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~------~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~ 297 (333)
...+.++|||+|||..+++++|+++|++||.|..+.++.+ +++|||+|.+.++|.+|++ |||..|+|+.|+|.
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~ 84 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVK 84 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEE
Confidence 3456789999999999999999999999999999999875 7899999999999999999 99999999999999
Q ss_pred ecCCCCCCC
Q psy8956 298 LSGTKPGVS 306 (333)
Q Consensus 298 ~a~~~~~~~ 306 (333)
+++.+....
T Consensus 85 ~a~~~~~~~ 93 (99)
T 2dgs_A 85 RAEPRDSKS 93 (99)
T ss_dssp ECCCCCCCC
T ss_pred ECCCCcccC
Confidence 999876544
No 128
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.75 E-value=1.1e-17 Score=114.58 Aligned_cols=76 Identities=22% Similarity=0.495 Sum_probs=72.0
Q ss_pred cceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC------CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEecCC
Q psy8956 228 KNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGT 301 (333)
Q Consensus 228 ~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~------~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~a~~ 301 (333)
+.+|||+|||..+++++|+++|++||.|..+.+..+ +++|||+|.+.++|.+|++.|||..++|++|+|.+|++
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 368999999999999999999999999999999876 78999999999999999999999999999999999998
Q ss_pred CC
Q psy8956 302 KP 303 (333)
Q Consensus 302 ~~ 303 (333)
++
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 129
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=3.9e-17 Score=118.91 Aligned_cols=86 Identities=22% Similarity=0.380 Sum_probs=77.4
Q ss_pred CCCCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC-----CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEE
Q psy8956 223 LQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVT 297 (333)
Q Consensus 223 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~-----~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~ 297 (333)
....+.++|||+|||..+++++|+++|++||.|..+.+..+ +++|||+|.+.++|.+|++.|||..|+|+.|.|.
T Consensus 10 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 89 (114)
T 2do0_A 10 QAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVK 89 (114)
T ss_dssp CCCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEE
Confidence 34456789999999999999999999999999999999876 6899999999999999999999999999999999
Q ss_pred ecCCCCCCCCC
Q psy8956 298 LSGTKPGVSIT 308 (333)
Q Consensus 298 ~a~~~~~~~~~ 308 (333)
+++....+...
T Consensus 90 ~a~~~~~~~~~ 100 (114)
T 2do0_A 90 MDERALPKGDF 100 (114)
T ss_dssp ECSCCCCCSCC
T ss_pred EcccCCCCCCC
Confidence 99876555433
No 130
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.1e-18 Score=118.64 Aligned_cols=79 Identities=16% Similarity=0.356 Sum_probs=74.4
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeee
Q psy8956 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFV 110 (333)
Q Consensus 32 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~-~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~~ 110 (333)
.+.++|||+|||+.+++++|+++|++||.|.++.+..+. ++.++|||||+|.+.++|.+|++.|+|..+.|+.+++.+.
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 456889999999999999999999999999999999987 7899999999999999999999999999999999988755
No 131
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=2e-17 Score=117.34 Aligned_cols=79 Identities=22% Similarity=0.231 Sum_probs=70.5
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCC--ccCCeeeEEee
Q psy8956 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH--LIGSKPVIITF 109 (333)
Q Consensus 32 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~--~~~g~~i~v~~ 109 (333)
.++++|||+|||+.+++++|+++|++||.|.++.++++ +|||||+|.+.++|.+|++.|++. .+.|+.|.|.|
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~ 87 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF-----KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNY 87 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 45688999999999999999999999999999988863 899999999999999999988765 49999999999
Q ss_pred eccCCC
Q psy8956 110 VELKPG 115 (333)
Q Consensus 110 ~~~~~~ 115 (333)
+..+..
T Consensus 88 a~~~~~ 93 (104)
T 1wex_A 88 STSKRI 93 (104)
T ss_dssp CSSSSC
T ss_pred ccCccc
Confidence 954443
No 132
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=7.8e-18 Score=120.72 Aligned_cols=83 Identities=19% Similarity=0.334 Sum_probs=76.8
Q ss_pred ccccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEee
Q psy8956 31 VYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITF 109 (333)
Q Consensus 31 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~-~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~ 109 (333)
..+.++|||+|||+.+++++|+++|..||.|.++.++.+. ++.++|||||+|.+.++|.+|+.. ++..+.|+.|.|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 4566889999999999999999999999999999999997 889999999999999999999988 99999999999998
Q ss_pred eccCC
Q psy8956 110 VELKP 114 (333)
Q Consensus 110 ~~~~~ 114 (333)
+..+.
T Consensus 92 a~~~~ 96 (105)
T 2dh8_A 92 CTPRG 96 (105)
T ss_dssp SCCSS
T ss_pred ccCCC
Confidence 85443
No 133
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.5e-17 Score=119.03 Aligned_cols=81 Identities=19% Similarity=0.316 Sum_probs=75.0
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCC-C-CCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEee
Q psy8956 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-N-DESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITF 109 (333)
Q Consensus 32 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~-~-~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~ 109 (333)
.+.++|||+|||+.+++++|+++|..|| |.++.++++. + +.++|||||+|.+.++|.+|+ .|++..+.|+.|.|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEE
Confidence 4558899999999999999999999999 9999999988 4 889999999999999999999 9999999999999999
Q ss_pred eccCC
Q psy8956 110 VELKP 114 (333)
Q Consensus 110 ~~~~~ 114 (333)
+..+.
T Consensus 91 a~~~~ 95 (104)
T 1wi8_A 91 ADQAQ 95 (104)
T ss_dssp CCCCC
T ss_pred ccCCC
Confidence 85443
No 134
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=2.1e-17 Score=118.06 Aligned_cols=84 Identities=35% Similarity=0.591 Sum_probs=77.3
Q ss_pred CCCCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC----CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEe
Q psy8956 223 LQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTL 298 (333)
Q Consensus 223 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~----~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~ 298 (333)
....+.++|||+|||..+++++|+++|++||.|..+.+..+ +++|||+|.+.++|.+|++.|||..|+|+.|.|.+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2d9p_A 10 ITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 89 (103)
T ss_dssp CCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 34557799999999999999999999999999999999865 78999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q psy8956 299 SGTKPGVS 306 (333)
Q Consensus 299 a~~~~~~~ 306 (333)
++.+..+.
T Consensus 90 a~~~~~~~ 97 (103)
T 2d9p_A 90 AQRKEERQ 97 (103)
T ss_dssp CSSCCCCC
T ss_pred ecccccCC
Confidence 99876554
No 135
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=2e-17 Score=115.00 Aligned_cols=81 Identities=28% Similarity=0.430 Sum_probs=74.3
Q ss_pred CCCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecCCcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEecCCCC
Q psy8956 224 QPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKP 303 (333)
Q Consensus 224 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~a~~~~ 303 (333)
...+.++|||+|||..+++++|+++|++||.|..+.+. +++|||+|.+.++|.+|++.|||..++|+.|+|.+++.+.
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~--~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 82 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV--KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQ 82 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC--SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE--CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCCC
Confidence 34567899999999999999999999999999999998 5599999999999999999999999999999999998875
Q ss_pred CCC
Q psy8956 304 GVS 306 (333)
Q Consensus 304 ~~~ 306 (333)
...
T Consensus 83 ~~~ 85 (90)
T 2dnp_A 83 KKS 85 (90)
T ss_dssp CCC
T ss_pred CCC
Confidence 443
No 136
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.5e-17 Score=116.94 Aligned_cols=80 Identities=23% Similarity=0.322 Sum_probs=74.2
Q ss_pred CccceEEEecCCCCCCHHHHH----HHhhccCCeeEEEeecC---CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEe
Q psy8956 226 ARKNKIFVANLPSNINNSEFE----ELFARFGTITSSSLVSD---KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTL 298 (333)
Q Consensus 226 ~~~~~l~v~nl~~~~~~~~l~----~~f~~~g~v~~v~i~~~---~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~ 298 (333)
...++|||+|||..+++++|+ ++|++||.|..+.++.+ +++|||+|.+.++|.+|++.|||..|+|++|+|.+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~ 86 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSL 86 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 355799999999999999999 99999999999999977 88999999999999999999999999999999999
Q ss_pred cCCCCCC
Q psy8956 299 SGTKPGV 305 (333)
Q Consensus 299 a~~~~~~ 305 (333)
|++...+
T Consensus 87 a~~~~~~ 93 (96)
T 2dgx_A 87 ATGASGP 93 (96)
T ss_dssp CCCSSCC
T ss_pred cCCCCCC
Confidence 9876543
No 137
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.75 E-value=8.7e-18 Score=116.14 Aligned_cols=78 Identities=27% Similarity=0.530 Sum_probs=70.3
Q ss_pred CccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC------CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEec
Q psy8956 226 ARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299 (333)
Q Consensus 226 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~------~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~a 299 (333)
.+.++|||+|||..+++++|+++|++||.|..+.+..+ +++|||+|.+.++|.+|++.|||..++|+.|+|.+|
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 35689999999999999999999999999999999876 679999999999999999999999999999999999
Q ss_pred CCCC
Q psy8956 300 GTKP 303 (333)
Q Consensus 300 ~~~~ 303 (333)
+.++
T Consensus 84 ~~kp 87 (87)
T 3bs9_A 84 TRKP 87 (87)
T ss_dssp C---
T ss_pred CCCC
Confidence 8763
No 138
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.8e-18 Score=122.20 Aligned_cols=80 Identities=14% Similarity=0.292 Sum_probs=76.0
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeee
Q psy8956 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFV 110 (333)
Q Consensus 32 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~-~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~~ 110 (333)
...++|||+|||+.+++++|+++|+.||.|..+.+..+. ++.++|||||+|.+.++|.+|++.|+|..+.|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 456889999999999999999999999999999999987 8889999999999999999999999999999999999988
Q ss_pred c
Q psy8956 111 E 111 (333)
Q Consensus 111 ~ 111 (333)
.
T Consensus 86 ~ 86 (104)
T 1p1t_A 86 A 86 (104)
T ss_dssp T
T ss_pred C
Confidence 4
No 139
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.75 E-value=2.6e-18 Score=115.16 Aligned_cols=74 Identities=22% Similarity=0.346 Sum_probs=70.3
Q ss_pred eEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeee
Q psy8956 36 ELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFV 110 (333)
Q Consensus 36 ~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~-~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~~ 110 (333)
+|||+|||+.+++++|+++|++||.|.++.+..++ ++.++|||||+|.+.++|.+|++ +++..+.|+.|.|+++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 48999999999999999999999999999999988 89999999999999999999997 9999999999999864
No 140
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=2.2e-17 Score=114.79 Aligned_cols=80 Identities=23% Similarity=0.430 Sum_probs=74.5
Q ss_pred CCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecCCcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEecCCCCC
Q psy8956 225 PARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKPG 304 (333)
Q Consensus 225 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~a~~~~~ 304 (333)
..+.++|||+|||..+++++|+++|++||.|..+.+. +++|||+|.+.++|.+|++.|||..++|+.|+|.+++.+..
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 82 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKSK 82 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCCCC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCCCC
Confidence 3467899999999999999999999999999999998 78999999999999999999999999999999999998765
Q ss_pred CC
Q psy8956 305 VS 306 (333)
Q Consensus 305 ~~ 306 (333)
..
T Consensus 83 ~~ 84 (90)
T 2dnq_A 83 AS 84 (90)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 141
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.75 E-value=7.1e-18 Score=124.80 Aligned_cols=81 Identities=17% Similarity=0.306 Sum_probs=76.1
Q ss_pred cccccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEe
Q psy8956 30 KVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIIT 108 (333)
Q Consensus 30 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~-~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~ 108 (333)
.....++|||+|||..+|+++|+++|++||.|.++.+..+. ++.++|||||+|.+.++|.+|+ .|+|..+.|+.|.|.
T Consensus 32 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 110 (124)
T 2jwn_A 32 KEIDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVL 110 (124)
T ss_dssp HHHHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEE
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEE
Confidence 34567899999999999999999999999999999999986 8899999999999999999999 799999999999999
Q ss_pred eec
Q psy8956 109 FVE 111 (333)
Q Consensus 109 ~~~ 111 (333)
++.
T Consensus 111 ~a~ 113 (124)
T 2jwn_A 111 PKR 113 (124)
T ss_dssp ESS
T ss_pred ECC
Confidence 884
No 142
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.74 E-value=2.2e-17 Score=120.39 Aligned_cols=84 Identities=27% Similarity=0.508 Sum_probs=76.6
Q ss_pred CCCCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC------CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEE
Q psy8956 223 LQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296 (333)
Q Consensus 223 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~------~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v 296 (333)
....+.++|||+|||..+++++|+++|++||.|..+.+..+ +++|||+|.+.++|.+|++.|||..|+|+.|+|
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 99 (115)
T 2cpz_A 20 KEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKV 99 (115)
T ss_dssp CCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34456789999999999999999999999999999999876 479999999999999999999999999999999
Q ss_pred EecCCCCCCC
Q psy8956 297 TLSGTKPGVS 306 (333)
Q Consensus 297 ~~a~~~~~~~ 306 (333)
.+++.+....
T Consensus 100 ~~a~~~~~~~ 109 (115)
T 2cpz_A 100 QLKRSKNDSK 109 (115)
T ss_dssp ECCCCSCCCC
T ss_pred EEcCCCCcCC
Confidence 9999876544
No 143
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=3e-17 Score=118.09 Aligned_cols=84 Identities=25% Similarity=0.475 Sum_probs=77.2
Q ss_pred CCCCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC-------CcEEEEEECCHHHHHHHHHHh-CCCeeCCeeE
Q psy8956 223 LQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-------KHIGFIEFIMPKHATHAVSTM-NGHVFKSKPL 294 (333)
Q Consensus 223 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~-------~~~~fV~f~~~~~A~~a~~~l-~g~~l~g~~l 294 (333)
......++|||+|||..+++++|+++|++||.|..|.++.+ +++|||+|.+.++|.+|++.| ||..|+|+.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l 89 (107)
T 2cph_A 10 PKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRL 89 (107)
T ss_dssp CCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBC
T ss_pred ccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEE
Confidence 34567799999999999999999999999999999999876 789999999999999999999 9999999999
Q ss_pred EEEecCCCCCCC
Q psy8956 295 KVTLSGTKPGVS 306 (333)
Q Consensus 295 ~v~~a~~~~~~~ 306 (333)
+|.+++.+....
T Consensus 90 ~v~~a~~~~~~~ 101 (107)
T 2cph_A 90 VLEWADSEVTVQ 101 (107)
T ss_dssp EEEECCCCCCCC
T ss_pred EEEeCCCCCCCC
Confidence 999999876544
No 144
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.74 E-value=2.6e-17 Score=119.90 Aligned_cols=84 Identities=26% Similarity=0.428 Sum_probs=76.7
Q ss_pred CCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC-----CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEec
Q psy8956 225 PARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299 (333)
Q Consensus 225 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~-----~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~a 299 (333)
....++|||+|||..+++++|+++|++||.|..|.+..+ +++|||+|.+.++|.+|++.|||..|+|+.|+|.+|
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 345689999999999999999999999999999999986 589999999999999999999999999999999999
Q ss_pred CCCCCCCCC
Q psy8956 300 GTKPGVSIT 308 (333)
Q Consensus 300 ~~~~~~~~~ 308 (333)
+.+......
T Consensus 84 ~~~~~~~~~ 92 (116)
T 2fy1_A 84 KKPSFQSGG 92 (116)
T ss_dssp CCSSCSSSS
T ss_pred CCCCCCCCC
Confidence 887655433
No 145
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=5.1e-18 Score=120.09 Aligned_cols=80 Identities=19% Similarity=0.297 Sum_probs=73.8
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeee
Q psy8956 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFV 110 (333)
Q Consensus 32 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~-~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~~ 110 (333)
...++|||+|||+.+++++|+++|..||.|..+.++.+. ++.++|||||+|.+.++|.+|++.|++..+.|+.|.|.++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 445789999999999999999999999999877777766 8889999999999999999999999999999999999988
Q ss_pred c
Q psy8956 111 E 111 (333)
Q Consensus 111 ~ 111 (333)
.
T Consensus 93 ~ 93 (98)
T 2cqp_A 93 S 93 (98)
T ss_dssp S
T ss_pred C
Confidence 4
No 146
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.74 E-value=6.4e-18 Score=126.10 Aligned_cols=82 Identities=23% Similarity=0.385 Sum_probs=76.4
Q ss_pred ccccceEEEeCCCCCCCHHHHHHHHhcCCCeeE--EEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCC----ccCCe
Q psy8956 31 VYKENELHVNNLEPSVDNQALINEFKKFGTLRD--VRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGH----LIGSK 103 (333)
Q Consensus 31 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~--v~i~~~~-~~~~~g~a~v~f~~~e~A~~al~~l~~~----~~~g~ 103 (333)
....++|||+|||+.+|+++|+++|++||.|.. |+|++++ +|.++|||||+|.+. +|.+|+..|+|. .+.|+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 366789999999999999999999999999966 9999999 999999999999999 999999999999 99999
Q ss_pred eeEEeeeccC
Q psy8956 104 PVIITFVELK 113 (333)
Q Consensus 104 ~i~v~~~~~~ 113 (333)
.|.|.++...
T Consensus 99 ~l~V~~a~~~ 108 (131)
T 2m2b_A 99 TINVEFAKGS 108 (131)
T ss_dssp CCCCEECCCS
T ss_pred EEEEEECCCC
Confidence 9999998543
No 147
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=9.1e-18 Score=122.24 Aligned_cols=82 Identities=20% Similarity=0.334 Sum_probs=76.8
Q ss_pred CcccccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEE
Q psy8956 29 NKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVII 107 (333)
Q Consensus 29 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~-~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v 107 (333)
......++|||+|||..+++++|+++|+.||.|.++.++.+. ++.++|||||+|.+.++|.+|+ .|++..+.|+.|.|
T Consensus 20 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 98 (114)
T 2cq4_A 20 PEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIV 98 (114)
T ss_dssp TTHHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEE
T ss_pred cccCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEE
Confidence 344677899999999999999999999999999999999988 6889999999999999999999 99999999999999
Q ss_pred eeec
Q psy8956 108 TFVE 111 (333)
Q Consensus 108 ~~~~ 111 (333)
.++.
T Consensus 99 ~~a~ 102 (114)
T 2cq4_A 99 QASQ 102 (114)
T ss_dssp EEHH
T ss_pred EecC
Confidence 9874
No 148
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=3.8e-17 Score=114.05 Aligned_cols=81 Identities=21% Similarity=0.413 Sum_probs=74.4
Q ss_pred CCCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecCCcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEecCCCC
Q psy8956 224 QPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKP 303 (333)
Q Consensus 224 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~a~~~~ 303 (333)
...+.++|||+|||..+++++|+++|++||.|..+.+. +++|||+|.+.++|.+|++.|||..|+|+.|+|.+++.+.
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~--~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 83 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV--KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRL 83 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC--SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE--CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCCC
Confidence 34567899999999999999999999999999999998 5599999999999999999999999999999999998875
Q ss_pred CCC
Q psy8956 304 GVS 306 (333)
Q Consensus 304 ~~~ 306 (333)
...
T Consensus 84 ~~~ 86 (92)
T 2dgt_A 84 RTA 86 (92)
T ss_dssp SCC
T ss_pred CCC
Confidence 443
No 149
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.74 E-value=9.6e-18 Score=128.45 Aligned_cols=78 Identities=19% Similarity=0.339 Sum_probs=74.2
Q ss_pred ccceEEEeCCCCCCCHHHHHHHHhcCC--CeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEee
Q psy8956 33 KENELHVNNLEPSVDNQALINEFKKFG--TLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITF 109 (333)
Q Consensus 33 ~~~~l~V~nLp~~~t~~~l~~~f~~~g--~v~~v~i~~~~-~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~ 109 (333)
..++|||+|||+.+|+++|+++|+.|| .|.+++++.+. +|.++|||||+|.+.++|.+|++.|+|..+.|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 568999999999999999999999999 99999999997 899999999999999999999999999999999999998
Q ss_pred e
Q psy8956 110 V 110 (333)
Q Consensus 110 ~ 110 (333)
+
T Consensus 134 a 134 (156)
T 3n9u_C 134 A 134 (156)
T ss_dssp C
T ss_pred c
Confidence 7
No 150
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.74 E-value=1.6e-17 Score=114.28 Aligned_cols=76 Identities=24% Similarity=0.482 Sum_probs=71.3
Q ss_pred CCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC------CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEe
Q psy8956 225 PARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTL 298 (333)
Q Consensus 225 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~------~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~ 298 (333)
..+.++|||+|||..+++++|+++|++||.|..+.++.+ +++|||+|.+.++|.+|++.|||..++|++|+|.+
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 346789999999999999999999999999999998765 88999999999999999999999999999999999
Q ss_pred cC
Q psy8956 299 SG 300 (333)
Q Consensus 299 a~ 300 (333)
|+
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 85
No 151
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=5.1e-17 Score=117.25 Aligned_cols=82 Identities=21% Similarity=0.368 Sum_probs=74.1
Q ss_pred cccccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEee
Q psy8956 30 KVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITF 109 (333)
Q Consensus 30 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~ 109 (333)
.....++|||+|||+.+|+++|+++|++||.|..+.+..+ +.++|||||+|.+.++|.+|++.|++..+.|+.|.|.+
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 95 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR--RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 95 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS--SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC--CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 3456789999999999999999999999999999988654 45799999999999999999999999999999999999
Q ss_pred eccC
Q psy8956 110 VELK 113 (333)
Q Consensus 110 ~~~~ 113 (333)
+...
T Consensus 96 a~~~ 99 (109)
T 1x4a_A 96 PRSG 99 (109)
T ss_dssp CCCC
T ss_pred cccC
Confidence 8543
No 152
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.74 E-value=2e-17 Score=124.94 Aligned_cols=87 Identities=22% Similarity=0.385 Sum_probs=79.7
Q ss_pred CcccccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEE
Q psy8956 29 NKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVII 107 (333)
Q Consensus 29 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~-~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v 107 (333)
......++|||+|||..+++++|+++|+.||.|.++.+.++. ++.++|||||+|.+.++|.+|++.|+|..+.|+.|.|
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 116 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKV 116 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 345667899999999999999999999999999999999987 7889999999999999999999999999999999999
Q ss_pred eeeccCCC
Q psy8956 108 TFVELKPG 115 (333)
Q Consensus 108 ~~~~~~~~ 115 (333)
.++.....
T Consensus 117 ~~a~~~~~ 124 (139)
T 1u6f_A 117 ALAASGHQ 124 (139)
T ss_dssp EESSCCCC
T ss_pred EECCCCCC
Confidence 99854433
No 153
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=8.8e-18 Score=121.06 Aligned_cols=80 Identities=25% Similarity=0.494 Sum_probs=74.7
Q ss_pred ccccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeee
Q psy8956 31 VYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFV 110 (333)
Q Consensus 31 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~~ 110 (333)
....++|||+|||..+|+++|+++|++||.|.++.+..+..+ ++|||||+|.+.++|.+|++.|+|..+.|+.|.|.++
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~-~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 104 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 104 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTB-CTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCC-CceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 456789999999999999999999999999999999988644 8999999999999999999999999999999999988
Q ss_pred c
Q psy8956 111 E 111 (333)
Q Consensus 111 ~ 111 (333)
.
T Consensus 105 ~ 105 (109)
T 2err_A 105 T 105 (109)
T ss_dssp C
T ss_pred C
Confidence 4
No 154
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.74 E-value=2e-17 Score=117.70 Aligned_cols=78 Identities=28% Similarity=0.497 Sum_probs=73.9
Q ss_pred ceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC-CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEecCCCCCCC
Q psy8956 229 NKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKPGVS 306 (333)
Q Consensus 229 ~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~-~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~a~~~~~~~ 306 (333)
++|||+|||..+++++|+++|++||.|..+.+..+ +++|||+|.+.++|.+|++.|||..++|+.|+|.+++.+....
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~ 79 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRRS 79 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCCSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCCcc
Confidence 47999999999999999999999999999999987 9999999999999999999999999999999999999877554
No 155
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=3.1e-17 Score=117.56 Aligned_cols=85 Identities=20% Similarity=0.388 Sum_probs=77.3
Q ss_pred CCCCCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC------CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEE
Q psy8956 222 LLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLK 295 (333)
Q Consensus 222 ~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~------~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~ 295 (333)
.....+.++|||+|||..+++++|+++|++||.|..+.+..+ +++|||+|.+.++|.+|++.|||..|+|+.|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (105)
T 1x5u_A 9 ISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIR 88 (105)
T ss_dssp CCCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 344567799999999999999999999999999999999876 57999999999999999999999999999999
Q ss_pred EEecCCCCCCC
Q psy8956 296 VTLSGTKPGVS 306 (333)
Q Consensus 296 v~~a~~~~~~~ 306 (333)
|.+++.+....
T Consensus 89 v~~a~~~~~~~ 99 (105)
T 1x5u_A 89 VNKASAHNKNL 99 (105)
T ss_dssp EEETTTTSCCC
T ss_pred EEECCCCCcCC
Confidence 99998876543
No 156
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=2e-17 Score=117.03 Aligned_cols=81 Identities=22% Similarity=0.477 Sum_probs=74.2
Q ss_pred CccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC---------CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEE
Q psy8956 226 ARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD---------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296 (333)
Q Consensus 226 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~---------~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v 296 (333)
.+.++|||+|||..+++++|+++|++||.|..+.+..+ +++|||+|.+.++|.+|++.|||..|+|+.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 45689999999999999999999999999999998853 579999999999999999999999999999999
Q ss_pred EecCCCCCCC
Q psy8956 297 TLSGTKPGVS 306 (333)
Q Consensus 297 ~~a~~~~~~~ 306 (333)
.+++.+....
T Consensus 83 ~~a~~~~~~~ 92 (98)
T 2cpf_A 83 RISERATKPA 92 (98)
T ss_dssp ECSSCSSCCC
T ss_pred EEccCCCCCC
Confidence 9998876444
No 157
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.74 E-value=1.9e-17 Score=116.60 Aligned_cols=79 Identities=22% Similarity=0.339 Sum_probs=74.1
Q ss_pred ccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC------CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEecC
Q psy8956 227 RKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSG 300 (333)
Q Consensus 227 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~------~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~a~ 300 (333)
++++|||+|||..+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|.+|++.|||..++|+.|+|.+|+
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 4689999999999999999999999999999999876 7899999999999999999999999999999999999
Q ss_pred CCCCC
Q psy8956 301 TKPGV 305 (333)
Q Consensus 301 ~~~~~ 305 (333)
.+...
T Consensus 81 ~~~~~ 85 (96)
T 2x1f_A 81 NSDIS 85 (96)
T ss_dssp CSSGG
T ss_pred CCCCC
Confidence 87644
No 158
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=2.7e-17 Score=117.46 Aligned_cols=83 Identities=16% Similarity=0.289 Sum_probs=76.0
Q ss_pred CCCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC------CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEE
Q psy8956 224 QPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVT 297 (333)
Q Consensus 224 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~------~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~ 297 (333)
...+.++|||+|||..+++++|+++|++||.|..+.+..+ +++|||+|.+.++|.+|++.|||..|+|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQ 88 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 4456789999999999999999999999999999999875 6899999999999999999999999999999999
Q ss_pred ecCCCCCCC
Q psy8956 298 LSGTKPGVS 306 (333)
Q Consensus 298 ~a~~~~~~~ 306 (333)
+|+.+....
T Consensus 89 ~a~~~~~~~ 97 (103)
T 2dnm_A 89 VARYGRRDL 97 (103)
T ss_dssp ECSSCCSCC
T ss_pred ECCcCCCCC
Confidence 999865443
No 159
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=5.8e-17 Score=116.94 Aligned_cols=83 Identities=27% Similarity=0.500 Sum_probs=75.9
Q ss_pred CCCCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC---CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEec
Q psy8956 223 LQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD---KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299 (333)
Q Consensus 223 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~---~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~a 299 (333)
....+.++|||+|||..+++++|+++|++||.|..+.+..+ +++|||+|.+.++|.+|++.|||..|+|+.|+|.++
T Consensus 17 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 96 (109)
T 1x4a_A 17 PAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFP 96 (109)
T ss_dssp CCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 34456789999999999999999999999999999999876 679999999999999999999999999999999999
Q ss_pred CCCCCC
Q psy8956 300 GTKPGV 305 (333)
Q Consensus 300 ~~~~~~ 305 (333)
+.+...
T Consensus 97 ~~~~~~ 102 (109)
T 1x4a_A 97 RSGRGT 102 (109)
T ss_dssp CCCCCC
T ss_pred ccCCCC
Confidence 886543
No 160
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.74 E-value=4.2e-18 Score=120.81 Aligned_cols=82 Identities=16% Similarity=0.272 Sum_probs=72.5
Q ss_pred CcccccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCC--CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeE
Q psy8956 29 NKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK--NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVI 106 (333)
Q Consensus 29 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~--~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~ 106 (333)
......++|||+|||.++++++|+++|+.|| |.++.+.++. +|.++|||||+|.+.++|.+|+ .|+|..+.|+.|.
T Consensus 14 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~ 91 (100)
T 2j76_E 14 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIR 91 (100)
T ss_dssp ------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEE
Confidence 3456678999999999999999999999999 9999999986 7889999999999999999999 8999999999999
Q ss_pred Eeeecc
Q psy8956 107 ITFVEL 112 (333)
Q Consensus 107 v~~~~~ 112 (333)
|.++..
T Consensus 92 V~~a~~ 97 (100)
T 2j76_E 92 VDVADQ 97 (100)
T ss_dssp CEECCC
T ss_pred EEeccC
Confidence 998843
No 161
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.74 E-value=9.8e-18 Score=116.91 Aligned_cols=76 Identities=11% Similarity=0.285 Sum_probs=69.5
Q ss_pred CccceEEEecCCCCCCHHHHHHHhhccCC--eeEEEeecC------CcEEEEEECCHHHHHHHHHHhCCC----eeCCee
Q psy8956 226 ARKNKIFVANLPSNINNSEFEELFARFGT--ITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGH----VFKSKP 293 (333)
Q Consensus 226 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~--v~~v~i~~~------~~~~fV~f~~~~~A~~a~~~l~g~----~l~g~~ 293 (333)
....+|||+|||+.+++++|+++|++||. +.+|+++.+ +|||||+|.+.++|.+|++.|||. .++||+
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~ 86 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKT 86 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEE
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEE
Confidence 45579999999999999999999999995 678998876 789999999999999999999997 489999
Q ss_pred EEEEecCC
Q psy8956 294 LKVTLSGT 301 (333)
Q Consensus 294 l~v~~a~~ 301 (333)
|.|.||+.
T Consensus 87 i~V~~Aks 94 (95)
T 2lkz_A 87 IGVDFAKS 94 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEEccC
Confidence 99999985
No 162
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.74 E-value=1.8e-17 Score=123.01 Aligned_cols=86 Identities=14% Similarity=0.361 Sum_probs=79.0
Q ss_pred ccccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEee
Q psy8956 31 VYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITF 109 (333)
Q Consensus 31 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~-~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~ 109 (333)
..+.++|||+|||+.+|+++|+++|+.||.|.++.++.+. ++.++|||||+|.+.++|.+|++.|+|..+.|+.|.|.+
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 98 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 98 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 3456889999999999999999999999999999999987 889999999999999999999999999999999999999
Q ss_pred eccCCCC
Q psy8956 110 VELKPGQ 116 (333)
Q Consensus 110 ~~~~~~~ 116 (333)
+......
T Consensus 99 a~~~~~~ 105 (126)
T 3ex7_B 99 CFVRGPP 105 (126)
T ss_dssp SEESSSC
T ss_pred ecCCCCC
Confidence 8654443
No 163
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.74 E-value=5.1e-17 Score=115.94 Aligned_cols=82 Identities=22% Similarity=0.387 Sum_probs=75.0
Q ss_pred CCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecCCcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEecCCCCC
Q psy8956 225 PARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKPG 304 (333)
Q Consensus 225 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~a~~~~~ 304 (333)
..+.++|||+|||..+++++|+++|++||.|..+.+. +++|||+|.+.++|.+|++.|||..|+|+.|.|.+++.+..
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 85 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQ 85 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCCcc
Confidence 3456899999999999999999999999999999988 67999999999999999999999999999999999988766
Q ss_pred CCCC
Q psy8956 305 VSIT 308 (333)
Q Consensus 305 ~~~~ 308 (333)
....
T Consensus 86 ~~~~ 89 (103)
T 2dgu_A 86 KRKE 89 (103)
T ss_dssp CCCC
T ss_pred cchh
Confidence 5433
No 164
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.5e-17 Score=117.41 Aligned_cols=83 Identities=25% Similarity=0.519 Sum_probs=76.1
Q ss_pred CCCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC------CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEE
Q psy8956 224 QPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVT 297 (333)
Q Consensus 224 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~------~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~ 297 (333)
...+.++|||+|||..+++++|+++|++||.|..+.+..+ +++|||+|.+.++|.+|++.|||..|+|+.|+|.
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3456789999999999999999999999999999999875 6799999999999999999999999999999999
Q ss_pred ecCCCCCCC
Q psy8956 298 LSGTKPGVS 306 (333)
Q Consensus 298 ~a~~~~~~~ 306 (333)
+++.+....
T Consensus 88 ~a~~~~~~~ 96 (102)
T 1x5s_A 88 QAGKSSDNR 96 (102)
T ss_dssp EEECCCCCC
T ss_pred ECCCCCCCC
Confidence 998876543
No 165
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=3.8e-17 Score=116.00 Aligned_cols=81 Identities=30% Similarity=0.547 Sum_probs=75.1
Q ss_pred CCCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC-----CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEe
Q psy8956 224 QPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTL 298 (333)
Q Consensus 224 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~-----~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~ 298 (333)
...+.++|||+|||..+++++|+++|++||.|..+.+..+ +++|||+|.+.++|.+|++.|||..|+|+.|+|.+
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 92 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAI 92 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4456789999999999999999999999999999999876 48999999999999999999999999999999999
Q ss_pred cCCCCC
Q psy8956 299 SGTKPG 304 (333)
Q Consensus 299 a~~~~~ 304 (333)
+++++.
T Consensus 93 a~~~~~ 98 (100)
T 2do4_A 93 SNSGPS 98 (100)
T ss_dssp CCCCSC
T ss_pred CCCCCC
Confidence 988754
No 166
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.1e-17 Score=118.03 Aligned_cols=80 Identities=15% Similarity=0.201 Sum_probs=74.2
Q ss_pred ccccceEEEeCCCCCCCHHHHHHHHhcCCCeeE-EEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEee
Q psy8956 31 VYKENELHVNNLEPSVDNQALINEFKKFGTLRD-VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITF 109 (333)
Q Consensus 31 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~-v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~ 109 (333)
....++|||+|||+.+|+++|+++|..||.|.. +.|..+.++.++|||||+|.+.++|.+|++. ++..+.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~ 90 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFK 90 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEE
Confidence 355688999999999999999999999999987 8888888999999999999999999999987 99999999999998
Q ss_pred ec
Q psy8956 110 VE 111 (333)
Q Consensus 110 ~~ 111 (333)
+.
T Consensus 91 ~~ 92 (104)
T 1wg5_A 91 SS 92 (104)
T ss_dssp EC
T ss_pred CC
Confidence 74
No 167
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.74 E-value=4.5e-17 Score=116.77 Aligned_cols=83 Identities=23% Similarity=0.392 Sum_probs=76.7
Q ss_pred CCCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC-----CcEEEEEECCHHHHHHHHHHhCCCeeCC---eeEE
Q psy8956 224 QPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKS---KPLK 295 (333)
Q Consensus 224 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~-----~~~~fV~f~~~~~A~~a~~~l~g~~l~g---~~l~ 295 (333)
...+.++|||+|||..+++++|+++|++||.|..+.+..+ +++|||+|.+.++|.+|++.|||..+.| +.|.
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~ 90 (105)
T 2dnh_A 11 RGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLV 90 (105)
T ss_dssp SCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEE
Confidence 3456799999999999999999999999999999999987 7899999999999999999999999988 9999
Q ss_pred EEecCCCCCCC
Q psy8956 296 VTLSGTKPGVS 306 (333)
Q Consensus 296 v~~a~~~~~~~ 306 (333)
|.+|+.+..+.
T Consensus 91 V~~a~~~~~~~ 101 (105)
T 2dnh_A 91 VKFADTDKESG 101 (105)
T ss_dssp EEESCSSCCCS
T ss_pred EEECccCcccC
Confidence 99999887654
No 168
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.73 E-value=2.6e-17 Score=114.03 Aligned_cols=78 Identities=21% Similarity=0.391 Sum_probs=72.1
Q ss_pred ccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC-------CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEec
Q psy8956 227 RKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299 (333)
Q Consensus 227 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~-------~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~a 299 (333)
..++|||+|||..+++++|+++|++||.|..+.+..+ +++|||+|.+.++|.+|++.|||..++|+.|+|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 4579999999999999999999999999999998653 789999999999999999999999999999999999
Q ss_pred CCCCC
Q psy8956 300 GTKPG 304 (333)
Q Consensus 300 ~~~~~ 304 (333)
.+...
T Consensus 83 ~~~~~ 87 (88)
T 4a8x_A 83 LAPWP 87 (88)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 77543
No 169
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=3.6e-17 Score=114.75 Aligned_cols=78 Identities=21% Similarity=0.475 Sum_probs=72.6
Q ss_pred CCCCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC------CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEE
Q psy8956 223 LQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296 (333)
Q Consensus 223 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~------~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v 296 (333)
....+.++|||+|||..+++++|+++|++||.|..+.+..+ +++|||+|.+.++|.+|++.|||..|+|++|+|
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 90 (94)
T 2e5h_A 11 GLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKA 90 (94)
T ss_dssp SCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 34556789999999999999999999999999999999875 679999999999999999999999999999999
Q ss_pred EecC
Q psy8956 297 TLSG 300 (333)
Q Consensus 297 ~~a~ 300 (333)
.+|+
T Consensus 91 ~~ak 94 (94)
T 2e5h_A 91 SIAI 94 (94)
T ss_dssp EECC
T ss_pred EecC
Confidence 9985
No 170
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=3.3e-17 Score=115.17 Aligned_cols=80 Identities=21% Similarity=0.349 Sum_probs=73.8
Q ss_pred CCCCCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC------CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEE
Q psy8956 222 LLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLK 295 (333)
Q Consensus 222 ~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~------~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~ 295 (333)
.....+.++|||+|||..+++++|+++|++||.|..+.+..+ +++|||+|.+.++|.+|++.|||..|+|++|+
T Consensus 9 ~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 88 (95)
T 2cqc_A 9 RANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 88 (95)
T ss_dssp CCSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 344567899999999999999999999999999999999865 67999999999999999999999999999999
Q ss_pred EEecCC
Q psy8956 296 VTLSGT 301 (333)
Q Consensus 296 v~~a~~ 301 (333)
|.+|+.
T Consensus 89 v~~a~~ 94 (95)
T 2cqc_A 89 VSGPSS 94 (95)
T ss_dssp EECCSC
T ss_pred EEecCC
Confidence 999875
No 171
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=2.2e-17 Score=119.45 Aligned_cols=83 Identities=16% Similarity=0.250 Sum_probs=75.0
Q ss_pred cccceEEEeCCCCCCCHHHHH---HHHhcCCCeeEEEEeeCC-CC---CcccEEEEEeCCHHHHHHHHHHhcCCccCCee
Q psy8956 32 YKENELHVNNLEPSVDNQALI---NEFKKFGTLRDVRVARNK-ND---ESRGFAIIVFNTPAEAKKARVEMNGHLIGSKP 104 (333)
Q Consensus 32 ~~~~~l~V~nLp~~~t~~~l~---~~f~~~g~v~~v~i~~~~-~~---~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~ 104 (333)
...++|||+|||+.+++++|+ ++|.+||.|.++.+.++. ++ .++|||||+|.+.++|.+|++.|+|..+.|+.
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 446789999999999999999 999999999999999887 33 46699999999999999999999999999999
Q ss_pred eEEeeeccCC
Q psy8956 105 VIITFVELKP 114 (333)
Q Consensus 105 i~v~~~~~~~ 114 (333)
|.|.++..++
T Consensus 93 l~V~~a~~k~ 102 (111)
T 2cpi_A 93 LKASLGTTKY 102 (111)
T ss_dssp EEEESCCCCS
T ss_pred EEEEeccccc
Confidence 9999985544
No 172
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.5e-17 Score=116.04 Aligned_cols=81 Identities=26% Similarity=0.470 Sum_probs=74.9
Q ss_pred CccceEEEecCCCCCCHHHHHHHhhccCCeeEE-EeecC------CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEe
Q psy8956 226 ARKNKIFVANLPSNINNSEFEELFARFGTITSS-SLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTL 298 (333)
Q Consensus 226 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v-~i~~~------~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~ 298 (333)
.++++|||+|||..+++++|+++|++||.|..+ .++.+ +++|||+|.+.++|.+|++.|||..|+|++|+|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 456899999999999999999999999999999 88876 78999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q psy8956 299 SGTKPGVS 306 (333)
Q Consensus 299 a~~~~~~~ 306 (333)
++.+....
T Consensus 83 a~~~~~~~ 90 (96)
T 1x5t_A 83 AFKKDSKG 90 (96)
T ss_dssp SCCCCCCC
T ss_pred ecccCCCC
Confidence 98876543
No 173
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.73 E-value=1.6e-17 Score=119.66 Aligned_cols=85 Identities=20% Similarity=0.308 Sum_probs=72.1
Q ss_pred CCcCcccccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCee
Q psy8956 26 KENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKP 104 (333)
Q Consensus 26 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~-~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~ 104 (333)
...+.....++|||+|||+.+|+++|+++|+.||.|.++.+..+. +|.++|||||+|.+.++|.+|++.+ +..+.|+.
T Consensus 17 ~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~ 95 (109)
T 2rs2_A 17 RGSHMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKT 95 (109)
T ss_dssp ---------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEE
T ss_pred cccccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEE
Confidence 334455677899999999999999999999999999999999998 7999999999999999999999875 58899999
Q ss_pred eEEeeec
Q psy8956 105 VIITFVE 111 (333)
Q Consensus 105 i~v~~~~ 111 (333)
|.|.++.
T Consensus 96 l~V~~a~ 102 (109)
T 2rs2_A 96 IDPKVAF 102 (109)
T ss_dssp EEEEECC
T ss_pred EEEEEcc
Confidence 9999884
No 174
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.73 E-value=3.2e-17 Score=117.81 Aligned_cols=82 Identities=29% Similarity=0.464 Sum_probs=75.3
Q ss_pred CCCCCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC------CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEE
Q psy8956 222 LLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLK 295 (333)
Q Consensus 222 ~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~------~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~ 295 (333)
.....+.++|||+|||..+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|.+|++.|||..|+|+.|+
T Consensus 20 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 99 (108)
T 2jrs_A 20 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMK 99 (108)
T ss_dssp CCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 334556789999999999999999999999999999999865 67999999999999999999999999999999
Q ss_pred EEecCCCC
Q psy8956 296 VTLSGTKP 303 (333)
Q Consensus 296 v~~a~~~~ 303 (333)
|.+++++.
T Consensus 100 V~~a~~k~ 107 (108)
T 2jrs_A 100 VGHVTERT 107 (108)
T ss_dssp EECSCSSC
T ss_pred EEEcccCC
Confidence 99998864
No 175
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=6.6e-17 Score=115.40 Aligned_cols=82 Identities=24% Similarity=0.302 Sum_probs=74.4
Q ss_pred ccccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEee
Q psy8956 31 VYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITF 109 (333)
Q Consensus 31 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~-~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~ 109 (333)
..+.++|||+|||+.+++++|+++|..||.|..+.+..+. ++.++|||||+|.+.++|.+|+. ++..+.|+.|.|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEEC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEe
Confidence 3456789999999999999999999999999999999997 79999999999999999999997 57789999999998
Q ss_pred eccCC
Q psy8956 110 VELKP 114 (333)
Q Consensus 110 ~~~~~ 114 (333)
+..+.
T Consensus 90 a~~~~ 94 (103)
T 2cqg_A 90 PNSKQ 94 (103)
T ss_dssp CCTTC
T ss_pred cCCCC
Confidence 85443
No 176
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.73 E-value=5.8e-18 Score=119.08 Aligned_cols=78 Identities=19% Similarity=0.303 Sum_probs=72.5
Q ss_pred ccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeee
Q psy8956 33 KENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFV 110 (333)
Q Consensus 33 ~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~-~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~~ 110 (333)
..++|||+|||+.+|+++|+++|++||.|..+.++.+. ++.++|||||+|.+.++|.+|++.|++..+.|+.|.|.++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 34789999999999999999999999999877777776 8889999999999999999999999999999999999977
No 177
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=7.2e-17 Score=117.48 Aligned_cols=81 Identities=26% Similarity=0.438 Sum_probs=75.2
Q ss_pred ccccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCcc--------CC
Q psy8956 31 VYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLI--------GS 102 (333)
Q Consensus 31 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~--------~g 102 (333)
....++|||+|||+.+|+++|+++|..||.|.++.+.++.++.++|||||+|.+.++|.+|++.|+|..+ .+
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~ 101 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 101 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCC
Confidence 3456899999999999999999999999999999999999889999999999999999999999999998 57
Q ss_pred eeeEEeeec
Q psy8956 103 KPVIITFVE 111 (333)
Q Consensus 103 ~~i~v~~~~ 111 (333)
+.|.|.|+.
T Consensus 102 ~~l~v~~a~ 110 (114)
T 1x5o_A 102 EPLLCKFSG 110 (114)
T ss_dssp SCBEEEECC
T ss_pred CceeEEccC
Confidence 778888884
No 178
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=3.1e-17 Score=119.83 Aligned_cols=84 Identities=24% Similarity=0.351 Sum_probs=77.1
Q ss_pred CcccccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEE
Q psy8956 29 NKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVII 107 (333)
Q Consensus 29 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~-~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v 107 (333)
......++|||+|||+.+|+++|+++|..||.|..+.++.+. ++.++|||||+|.+.++|.+|++. ++..+.|+.|.|
T Consensus 22 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V 100 (116)
T 1x4b_A 22 REKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEP 100 (116)
T ss_dssp CHHHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEE
T ss_pred cccCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEE
Confidence 344667999999999999999999999999999999999997 789999999999999999999987 999999999999
Q ss_pred eeeccC
Q psy8956 108 TFVELK 113 (333)
Q Consensus 108 ~~~~~~ 113 (333)
.++..+
T Consensus 101 ~~a~~~ 106 (116)
T 1x4b_A 101 KRAVAR 106 (116)
T ss_dssp ECCSSC
T ss_pred EECCCC
Confidence 988543
No 179
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.5e-17 Score=118.28 Aligned_cols=81 Identities=21% Similarity=0.344 Sum_probs=74.9
Q ss_pred CCCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC------CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEE
Q psy8956 224 QPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVT 297 (333)
Q Consensus 224 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~------~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~ 297 (333)
...++++|||+|||..+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|.+|++.|||..|+|+.|.|.
T Consensus 19 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 98 (106)
T 1p27_B 19 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 98 (106)
T ss_dssp CBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEE
Confidence 3456789999999999999999999999999999999866 6899999999999999999999999999999999
Q ss_pred ecCCCCC
Q psy8956 298 LSGTKPG 304 (333)
Q Consensus 298 ~a~~~~~ 304 (333)
+|+.++.
T Consensus 99 ~a~~~~~ 105 (106)
T 1p27_B 99 WCFVRGP 105 (106)
T ss_dssp ESEESSC
T ss_pred eecCCCC
Confidence 9988653
No 180
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.73 E-value=3e-17 Score=124.24 Aligned_cols=83 Identities=23% Similarity=0.406 Sum_probs=76.8
Q ss_pred cCcccccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeE
Q psy8956 28 NNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVI 106 (333)
Q Consensus 28 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~-~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~ 106 (333)
.....+.++|||+|||+.+++++|+++|++||.|..+.+.+++ ++.++|||||+|.+.++|.+|++.|+|..+.|+.|.
T Consensus 57 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 136 (140)
T 2ku7_A 57 GGSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIR 136 (140)
T ss_dssp CSSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEE
T ss_pred CCCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 3445678999999999999999999999999999999999986 889999999999999999999999999999999999
Q ss_pred Eeee
Q psy8956 107 ITFV 110 (333)
Q Consensus 107 v~~~ 110 (333)
|+++
T Consensus 137 v~~A 140 (140)
T 2ku7_A 137 VNLA 140 (140)
T ss_dssp EEC-
T ss_pred EEeC
Confidence 9864
No 181
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=3.6e-17 Score=115.40 Aligned_cols=76 Identities=26% Similarity=0.492 Sum_probs=70.1
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccC--CeeeEEee
Q psy8956 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIG--SKPVIITF 109 (333)
Q Consensus 32 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~--g~~i~v~~ 109 (333)
.+.++|||+|||+.+|+++|+++|++||.|.++.+..+ +|||||+|.+.++|.+|++.|++..+. |+.|.|.+
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~ 89 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG-----DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDF 89 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS-----SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC-----CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEE
Confidence 45578999999999999999999999999999988754 789999999999999999999999999 99999999
Q ss_pred ecc
Q psy8956 110 VEL 112 (333)
Q Consensus 110 ~~~ 112 (333)
+..
T Consensus 90 a~~ 92 (97)
T 1why_A 90 AKS 92 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 843
No 182
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=2.2e-17 Score=119.23 Aligned_cols=78 Identities=26% Similarity=0.366 Sum_probs=74.0
Q ss_pred ccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecCCcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEecCCCCC
Q psy8956 227 RKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKPG 304 (333)
Q Consensus 227 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~a~~~~~ 304 (333)
..++|||+|||..+++++|+++|++||.|..|.+...+++|||+|.+.++|.+|++.|||..|+|++|.|.||+....
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 86 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIGVF 86 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETTTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCCcc
Confidence 467999999999999999999999999999999998899999999999999999999999999999999999987543
No 183
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.73 E-value=1.7e-17 Score=118.03 Aligned_cols=77 Identities=18% Similarity=0.368 Sum_probs=73.3
Q ss_pred CccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecCCcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEecCCC
Q psy8956 226 ARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302 (333)
Q Consensus 226 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~a~~~ 302 (333)
...++|||+|||..+++++|+++|++||.|..+++...+++|||+|.+.++|.+|+..|||..++|+.|+|.+|+.+
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 101 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKER 101 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCCC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccCC
Confidence 44689999999999999999999999999999999988999999999999999999999999999999999999864
No 184
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=5e-17 Score=112.94 Aligned_cols=76 Identities=12% Similarity=0.225 Sum_probs=70.3
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeec
Q psy8956 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVE 111 (333)
Q Consensus 32 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~~~ 111 (333)
.+.++|||+|||+++++++|+++|++||.|.++.+. +|||||+|.+.++|.+|++.|++..+.|+.|.|.++.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 78 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII-------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASK 78 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECC
Confidence 456889999999999999999999999999999887 6899999999999999999999999999999999985
Q ss_pred cCC
Q psy8956 112 LKP 114 (333)
Q Consensus 112 ~~~ 114 (333)
.+.
T Consensus 79 ~~~ 81 (90)
T 2dnq_A 79 NKS 81 (90)
T ss_dssp CCC
T ss_pred CCC
Confidence 443
No 185
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.73 E-value=1.4e-17 Score=121.66 Aligned_cols=80 Identities=11% Similarity=0.082 Sum_probs=75.1
Q ss_pred ccccceEEEeCCCCCCCHHHHHHHHhcCCC---eeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEE
Q psy8956 31 VYKENELHVNNLEPSVDNQALINEFKKFGT---LRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVII 107 (333)
Q Consensus 31 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~---v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v 107 (333)
....++|||+|||+++|+++|+++|+.||. |..++++++..|.++|||||+|.+.++|.+|++ +++..+.|+.|.|
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 92 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEV 92 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEE
Confidence 456788999999999999999999999998 899999999889999999999999999999998 9999999999999
Q ss_pred eeec
Q psy8956 108 TFVE 111 (333)
Q Consensus 108 ~~~~ 111 (333)
.++.
T Consensus 93 ~~a~ 96 (118)
T 2db1_A 93 FKSH 96 (118)
T ss_dssp EEEC
T ss_pred EECC
Confidence 9873
No 186
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.7e-17 Score=118.53 Aligned_cols=82 Identities=20% Similarity=0.464 Sum_probs=75.9
Q ss_pred CCCCCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC----CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEE
Q psy8956 222 LLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVT 297 (333)
Q Consensus 222 ~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~----~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~ 297 (333)
.......++|||+|||..+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|.+|++.|||..|+|+.|+|.
T Consensus 23 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 102 (109)
T 2err_A 23 TENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 102 (109)
T ss_dssp CSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEE
T ss_pred ccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 344557789999999999999999999999999999999876 7899999999999999999999999999999999
Q ss_pred ecCCCC
Q psy8956 298 LSGTKP 303 (333)
Q Consensus 298 ~a~~~~ 303 (333)
+|+++.
T Consensus 103 ~a~~~~ 108 (109)
T 2err_A 103 NATARV 108 (109)
T ss_dssp ECCCSC
T ss_pred ECCCCc
Confidence 998763
No 187
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.73 E-value=3.5e-17 Score=118.38 Aligned_cols=82 Identities=22% Similarity=0.318 Sum_probs=75.7
Q ss_pred CCCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC------CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEE
Q psy8956 224 QPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVT 297 (333)
Q Consensus 224 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~------~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~ 297 (333)
...++++|||+|||..+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|.+|+..|||..|+|+.|+|.
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 101 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 101 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 4456789999999999999999999999999999999866 6899999999999999999999999999999999
Q ss_pred ecCCCCCC
Q psy8956 298 LSGTKPGV 305 (333)
Q Consensus 298 ~a~~~~~~ 305 (333)
+++.+..+
T Consensus 102 ~a~~~~~~ 109 (110)
T 1oo0_B 102 WCFVKGPK 109 (110)
T ss_dssp ESEESSCC
T ss_pred EcccCCCC
Confidence 99887543
No 188
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.3e-17 Score=117.07 Aligned_cols=79 Identities=15% Similarity=0.163 Sum_probs=73.0
Q ss_pred ccccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeee
Q psy8956 31 VYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFV 110 (333)
Q Consensus 31 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~~ 110 (333)
+...++|||+|||+++|+++|+++|+.||.+ +++|+.++++.++|||||+|.+.++|.+|+ .+++..+.|+.|.|..+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~~ 89 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVELFLN 89 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEEEEC
Confidence 4566889999999999999999999999955 999999999999999999999999999999 57999999999999987
Q ss_pred c
Q psy8956 111 E 111 (333)
Q Consensus 111 ~ 111 (333)
.
T Consensus 90 ~ 90 (102)
T 1wez_A 90 S 90 (102)
T ss_dssp C
T ss_pred C
Confidence 4
No 189
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.73 E-value=5.8e-18 Score=115.20 Aligned_cols=72 Identities=17% Similarity=0.342 Sum_probs=67.0
Q ss_pred ceEEEeCCCCCC------CHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCe-eeEE
Q psy8956 35 NELHVNNLEPSV------DNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSK-PVII 107 (333)
Q Consensus 35 ~~l~V~nLp~~~------t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~-~i~v 107 (333)
++|||+|||..+ |+++|+++|++||.|.++.+. ..+|.++|||||+|.+.++|.+|++.|+|..+.|+ .|.|
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~-~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC-CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec-CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 689999999999 779999999999999999887 45788999999999999999999999999999999 8876
No 190
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=5.8e-18 Score=114.14 Aligned_cols=75 Identities=23% Similarity=0.387 Sum_probs=71.0
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeee
Q psy8956 35 NELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFV 110 (333)
Q Consensus 35 ~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~-~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~~ 110 (333)
++|||+|||+++++++|+++|++||.|.++.+.+++ ++.++|+|||+|.+.++|.+|++.++ ..+.|+.|.|+++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 469999999999999999999999999999999987 78999999999999999999999988 8899999999875
No 191
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.2e-16 Score=113.22 Aligned_cols=80 Identities=21% Similarity=0.375 Sum_probs=73.5
Q ss_pred CCCCccceEEEecCCCCCCHHHHHHHhhcc--CCeeEEEeecCCcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEecC
Q psy8956 223 LQPARKNKIFVANLPSNINNSEFEELFARF--GTITSSSLVSDKHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSG 300 (333)
Q Consensus 223 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~--g~v~~v~i~~~~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~a~ 300 (333)
....+.++|||+|||..+++++|+++|++| |.|..+.+. +++|||+|.+.++|.+|+..|||..|+|+.|+|.+++
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 87 (99)
T 2cpd_A 10 DTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAK 87 (99)
T ss_dssp SCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCC
T ss_pred cccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 344567899999999999999999999999 899988876 6799999999999999999999999999999999998
Q ss_pred CCCC
Q psy8956 301 TKPG 304 (333)
Q Consensus 301 ~~~~ 304 (333)
.+..
T Consensus 88 ~~~~ 91 (99)
T 2cpd_A 88 PVDK 91 (99)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8654
No 192
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=8e-17 Score=116.68 Aligned_cols=83 Identities=20% Similarity=0.396 Sum_probs=76.2
Q ss_pred CCCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC------CcEEEEEECCHHHHHHHHHHhC------CCeeCC
Q psy8956 224 QPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMN------GHVFKS 291 (333)
Q Consensus 224 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~------~~~~fV~f~~~~~A~~a~~~l~------g~~l~g 291 (333)
...+.++|||+|||..+++++|+++|++||.|..|.++.+ +++|||+|.+.++|.+|++.|| |..|+|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 4456789999999999999999999999999999999865 7899999999999999999999 999999
Q ss_pred eeEEEEecCCCCCCC
Q psy8956 292 KPLKVTLSGTKPGVS 306 (333)
Q Consensus 292 ~~l~v~~a~~~~~~~ 306 (333)
+.|+|.++..+....
T Consensus 91 ~~l~v~~a~~~~~~~ 105 (111)
T 1x4h_A 91 RQLKVDLAVTRDEAA 105 (111)
T ss_dssp CEEEEECCCCCCCCC
T ss_pred EEEEEEECCCCccCC
Confidence 999999999875544
No 193
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=3.6e-17 Score=116.37 Aligned_cols=80 Identities=25% Similarity=0.349 Sum_probs=72.7
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeec
Q psy8956 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVE 111 (333)
Q Consensus 32 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~~~ 111 (333)
.+.++|||+|||+.+|+++|+++|.+||.| .++.+.++.++|||||+|.+.++|.+|++.|++..+.|+.|.|.++.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 89 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQG 89 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcC
Confidence 457889999999999999999999999977 56676788899999999999999999999999999999999999985
Q ss_pred cCC
Q psy8956 112 LKP 114 (333)
Q Consensus 112 ~~~ 114 (333)
.+.
T Consensus 90 ~~~ 92 (101)
T 2fc9_A 90 PRG 92 (101)
T ss_dssp SCC
T ss_pred CCC
Confidence 443
No 194
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=1e-16 Score=115.35 Aligned_cols=79 Identities=20% Similarity=0.411 Sum_probs=74.2
Q ss_pred CccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecCCcEEEEEECCHHHHHHHHHHhCCCeeCC-----eeEEEEecC
Q psy8956 226 ARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKHIGFIEFIMPKHATHAVSTMNGHVFKS-----KPLKVTLSG 300 (333)
Q Consensus 226 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~~~~~fV~f~~~~~A~~a~~~l~g~~l~g-----~~l~v~~a~ 300 (333)
...++|||+|||..+++++|+++|++||.|..+.+..+ ++|||+|.+.++|.+|++.|||..|+| +.|+|.+|+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a~ 91 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDG 91 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEESS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeCC
Confidence 45689999999999999999999999999999999987 999999999999999999999999999 999999999
Q ss_pred CCCCC
Q psy8956 301 TKPGV 305 (333)
Q Consensus 301 ~~~~~ 305 (333)
++...
T Consensus 92 ~~~~~ 96 (108)
T 1x4c_A 92 PRSPS 96 (108)
T ss_dssp CCSCC
T ss_pred CCCCC
Confidence 86543
No 195
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=3.5e-17 Score=116.86 Aligned_cols=82 Identities=12% Similarity=0.222 Sum_probs=74.5
Q ss_pred CCCccceEEE--ecCCCCCCHHHHHHHhhccCCeeEEEeecCCcEEEEEECCHHHHHHHHHHhCCCee-----CCeeEEE
Q psy8956 224 QPARKNKIFV--ANLPSNINNSEFEELFARFGTITSSSLVSDKHIGFIEFIMPKHATHAVSTMNGHVF-----KSKPLKV 296 (333)
Q Consensus 224 ~~~~~~~l~v--~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~~~~~fV~f~~~~~A~~a~~~l~g~~l-----~g~~l~v 296 (333)
...++++||| +||+..+++++|+++|++||.|..|.+..+++||||+|.+.++|.+|++.|||..+ .|++|.|
T Consensus 21 ~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v 100 (114)
T 2cq2_A 21 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYL 100 (114)
T ss_dssp CSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTTCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEE
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEE
Confidence 3456789999 66999999999999999999999999998899999999999999999999999998 6899999
Q ss_pred EecCCCCCC
Q psy8956 297 TLSGTKPGV 305 (333)
Q Consensus 297 ~~a~~~~~~ 305 (333)
.|+...+-.
T Consensus 101 ~~a~~~p~~ 109 (114)
T 2cq2_A 101 NFVEKVQWS 109 (114)
T ss_dssp EEESCCCCS
T ss_pred EecccCccc
Confidence 999875433
No 196
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.72 E-value=5.6e-17 Score=124.95 Aligned_cols=82 Identities=20% Similarity=0.304 Sum_probs=77.6
Q ss_pred ccccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEee
Q psy8956 31 VYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITF 109 (333)
Q Consensus 31 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~-~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~ 109 (333)
..+.++|||+|||+.+|+++|+++|+.||.|..|.|+.+. ++.++|||||+|.+.++|.+|++.|++..|.|+.|.|.+
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 115 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3567899999999999999999999999999999999998 788999999999999999999999999999999999999
Q ss_pred ecc
Q psy8956 110 VEL 112 (333)
Q Consensus 110 ~~~ 112 (333)
+..
T Consensus 116 a~~ 118 (156)
T 1h2v_Z 116 DAG 118 (156)
T ss_dssp ESC
T ss_pred CCC
Confidence 954
No 197
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.72 E-value=6.3e-17 Score=113.89 Aligned_cols=79 Identities=23% Similarity=0.436 Sum_probs=72.5
Q ss_pred CCCCccceEEEecCCC-CCCHHHHHHHhhccCCeeEEEeecCCcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEecCC
Q psy8956 223 LQPARKNKIFVANLPS-NINNSEFEELFARFGTITSSSLVSDKHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGT 301 (333)
Q Consensus 223 ~~~~~~~~l~v~nl~~-~~~~~~l~~~f~~~g~v~~v~i~~~~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~a~~ 301 (333)
....++++|||+|||. .+++++|+++|++||.|..+.+. +|+|||+|.+.++|.+|++.|||..++|+.|+|.+++.
T Consensus 17 ~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 94 (97)
T 2xnq_A 17 RGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSS 94 (97)
T ss_dssp --CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCC
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCC
Confidence 3455789999999998 99999999999999999999986 78999999999999999999999999999999999987
Q ss_pred CC
Q psy8956 302 KP 303 (333)
Q Consensus 302 ~~ 303 (333)
+.
T Consensus 95 ~~ 96 (97)
T 2xnq_A 95 NA 96 (97)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 198
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=2.8e-17 Score=117.62 Aligned_cols=77 Identities=14% Similarity=0.191 Sum_probs=72.5
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeee
Q psy8956 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFV 110 (333)
Q Consensus 32 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~~ 110 (333)
....+|||+|||+++|+++|+++|+.| .|.+|.|+++..|+++|||||+|.+.++|.+|+ .+++..+.|+.|.|..+
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a 90 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPA 90 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 456789999999999999999999999 899999999999999999999999999999999 68999999999999866
No 199
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=6.1e-17 Score=114.68 Aligned_cols=78 Identities=24% Similarity=0.458 Sum_probs=71.8
Q ss_pred ccccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeee
Q psy8956 31 VYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFV 110 (333)
Q Consensus 31 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~~ 110 (333)
..+.++|||+|||+.+|+++|+++|++||.|..+.+.++ +|||||+|.+.++|.+|++.|+|..+.|+.|.|.++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~-----kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD-----KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFA 86 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT-----TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC-----CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEc
Confidence 355688999999999999999999999999999998864 899999999999999999999999999999999998
Q ss_pred ccC
Q psy8956 111 ELK 113 (333)
Q Consensus 111 ~~~ 113 (333)
..+
T Consensus 87 ~~~ 89 (99)
T 2cpj_A 87 CHS 89 (99)
T ss_dssp SCC
T ss_pred CCC
Confidence 543
No 200
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=2.7e-17 Score=117.41 Aligned_cols=79 Identities=18% Similarity=0.193 Sum_probs=70.6
Q ss_pred cccccceEEEeCCCCC-CCHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcC--CccCCeeeE
Q psy8956 30 KVYKENELHVNNLEPS-VDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNG--HLIGSKPVI 106 (333)
Q Consensus 30 ~~~~~~~l~V~nLp~~-~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~--~~~~g~~i~ 106 (333)
...+.++|||+|||++ +|+++|+++|++||.|.++.+.+ ++|||||+|.+.++|.+|++.|++ ..+.|+.|.
T Consensus 21 ~~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~-----~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 21 KQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR-----MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SSCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET-----TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred cCCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec-----CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 3567889999999998 99999999999999999999975 489999999999999999998865 459999999
Q ss_pred EeeeccC
Q psy8956 107 ITFVELK 113 (333)
Q Consensus 107 v~~~~~~ 113 (333)
|.++...
T Consensus 96 V~~a~~~ 102 (112)
T 1x4f_A 96 VDLSEKY 102 (112)
T ss_dssp EEEECSC
T ss_pred EEECccc
Confidence 9998433
No 201
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.72 E-value=3.2e-17 Score=120.60 Aligned_cols=79 Identities=27% Similarity=0.379 Sum_probs=71.5
Q ss_pred ccccceEEEeCCCCCCCHHHHH----HHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeE
Q psy8956 31 VYKENELHVNNLEPSVDNQALI----NEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVI 106 (333)
Q Consensus 31 ~~~~~~l~V~nLp~~~t~~~l~----~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~ 106 (333)
..+.++|||+|||+.+++++|+ ++|++||.|.+|.+.+ ++.++|||||+|.+.++|..|+..|||..+.|+.|.
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~--~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~ 103 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL--SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLV 103 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC--CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc--CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEE
Confidence 3557899999999999999876 6899999999887753 677899999999999999999999999999999999
Q ss_pred Eeeec
Q psy8956 107 ITFVE 111 (333)
Q Consensus 107 v~~~~ 111 (333)
|.++.
T Consensus 104 V~~a~ 108 (127)
T 2a3j_A 104 ITFSE 108 (127)
T ss_dssp EEECC
T ss_pred EEEcc
Confidence 99984
No 202
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.5e-17 Score=120.89 Aligned_cols=80 Identities=15% Similarity=0.230 Sum_probs=74.9
Q ss_pred ccccceEEEeCCCCCCCHHHHHHHHhcCCCe-eEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEee
Q psy8956 31 VYKENELHVNNLEPSVDNQALINEFKKFGTL-RDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITF 109 (333)
Q Consensus 31 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v-~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~ 109 (333)
+...++|||+|||+.+|+++|+++|+.||.| .++.|+.+.++.++|||||+|.+.++|.+|++. ++..+.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHV 90 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEE
Confidence 4567889999999999999999999999999 889999999999999999999999999999976 99999999999998
Q ss_pred ec
Q psy8956 110 VE 111 (333)
Q Consensus 110 ~~ 111 (333)
+.
T Consensus 91 a~ 92 (114)
T 2cpy_A 91 VT 92 (114)
T ss_dssp EC
T ss_pred CC
Confidence 84
No 203
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=4.3e-17 Score=117.71 Aligned_cols=83 Identities=17% Similarity=0.258 Sum_probs=74.6
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhcCCC-eeEEEEe-eCC-CCCcccEEEEEeCCHHHHHHHHHHhc--CCccCCeeeE
Q psy8956 32 YKENELHVNNLEPSVDNQALINEFKKFGT-LRDVRVA-RNK-NDESRGFAIIVFNTPAEAKKARVEMN--GHLIGSKPVI 106 (333)
Q Consensus 32 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~-v~~v~i~-~~~-~~~~~g~a~v~f~~~e~A~~al~~l~--~~~~~g~~i~ 106 (333)
.+.++|||+|||+.+|+++|+++|..||. |.++.++ .+. ++.++|||||+|.+.++|.+|+..|+ +..+.|+.|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 34678999999999999999999999998 9999988 566 67899999999999999999999996 5889999999
Q ss_pred EeeeccCC
Q psy8956 107 ITFVELKP 114 (333)
Q Consensus 107 v~~~~~~~ 114 (333)
|.++....
T Consensus 86 V~~a~~~~ 93 (109)
T 2dis_A 86 VDWAEPEI 93 (109)
T ss_dssp EEESCSSC
T ss_pred EEEcCCCC
Confidence 99985443
No 204
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.72 E-value=4e-18 Score=118.63 Aligned_cols=78 Identities=17% Similarity=0.332 Sum_probs=72.4
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeeccC
Q psy8956 35 NELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELK 113 (333)
Q Consensus 35 ~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~-~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~~~~~ 113 (333)
++|||+|||+.+++++|+++|++||.|.++.+.++. ++.++|||||+|.+.+ |.+|+..|+|..+.|+.|.|.++...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 579999999999999999999999999999999988 7899999999999999 99999999999999999999988433
No 205
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.72 E-value=4.3e-17 Score=117.04 Aligned_cols=79 Identities=25% Similarity=0.545 Sum_probs=73.3
Q ss_pred CCCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecCCcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEecCCCC
Q psy8956 224 QPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKP 303 (333)
Q Consensus 224 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~a~~~~ 303 (333)
.....++|||+|||..+++++|+++|++||.|..+.+. +|+|||+|.+.++|.+|++.|||..++|+.|.|.+++.+.
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 104 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKLPA 104 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSCCC
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCCC
Confidence 44567899999999999999999999999999999998 8999999999999999999999999999999999998865
Q ss_pred C
Q psy8956 304 G 304 (333)
Q Consensus 304 ~ 304 (333)
.
T Consensus 105 ~ 105 (108)
T 2jvo_A 105 K 105 (108)
T ss_dssp -
T ss_pred C
Confidence 4
No 206
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.72 E-value=4.9e-17 Score=126.36 Aligned_cols=85 Identities=16% Similarity=0.374 Sum_probs=78.0
Q ss_pred cccccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEe
Q psy8956 30 KVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIIT 108 (333)
Q Consensus 30 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~-~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~ 108 (333)
...+.++|||+|||+.+++++|+++|.+||.|..|.+..+. +|.++|||||+|.+.++|.+|+..|+|..|.|+.|.|.
T Consensus 68 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 147 (165)
T 1rk8_A 68 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 147 (165)
T ss_dssp CCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567889999999999999999999999999999999997 88999999999999999999999999999999999999
Q ss_pred eeccCC
Q psy8956 109 FVELKP 114 (333)
Q Consensus 109 ~~~~~~ 114 (333)
++....
T Consensus 148 ~a~~~~ 153 (165)
T 1rk8_A 148 WCFVKG 153 (165)
T ss_dssp ESEECC
T ss_pred EecCCC
Confidence 885443
No 207
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.72 E-value=8.2e-17 Score=115.59 Aligned_cols=84 Identities=20% Similarity=0.445 Sum_probs=76.3
Q ss_pred CCCCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC------CcEEEEEECCHHHHHHHHHHhCCCee---CCee
Q psy8956 223 LQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVF---KSKP 293 (333)
Q Consensus 223 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~------~~~~fV~f~~~~~A~~a~~~l~g~~l---~g~~ 293 (333)
....+.++|||+|||..+++++|+++|++||.|..|.++.+ +++|||+|.+.++|.+|++.|||..+ .|++
T Consensus 8 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~ 87 (106)
T 2dgp_A 8 MKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRP 87 (106)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCce
Confidence 34556789999999999999999999999999999999875 68999999999999999999999988 8999
Q ss_pred EEEEecCCCCCCC
Q psy8956 294 LKVTLSGTKPGVS 306 (333)
Q Consensus 294 l~v~~a~~~~~~~ 306 (333)
|.|.++..+....
T Consensus 88 l~v~~a~~~~~~~ 100 (106)
T 2dgp_A 88 IQVKPADSESRGG 100 (106)
T ss_dssp CEEEECCCCSCCC
T ss_pred EEEEECCcccccC
Confidence 9999999876543
No 208
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1e-16 Score=116.45 Aligned_cols=83 Identities=23% Similarity=0.416 Sum_probs=76.1
Q ss_pred CCCccceEEEecCCCCCCHHHHHHHhhccCCee--------EEEeecC------CcEEEEEECCHHHHHHHHHHhCCCee
Q psy8956 224 QPARKNKIFVANLPSNINNSEFEELFARFGTIT--------SSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVF 289 (333)
Q Consensus 224 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~--------~v~i~~~------~~~~fV~f~~~~~A~~a~~~l~g~~l 289 (333)
.....++|||+|||..+++++|+++|++||.|. .+.+..+ +++|||+|.+.++|.+|++.|||..|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 455679999999999999999999999999998 6888876 78999999999999999999999999
Q ss_pred CCeeEEEEecCCCCCCC
Q psy8956 290 KSKPLKVTLSGTKPGVS 306 (333)
Q Consensus 290 ~g~~l~v~~a~~~~~~~ 306 (333)
+|+.|+|.+++.+....
T Consensus 91 ~g~~l~V~~a~~~~~~~ 107 (113)
T 2cpe_A 91 QGSKLKVSLARKKPPMN 107 (113)
T ss_dssp TTEECEEECSSCCCCST
T ss_pred CCCEEEEEECCCCCCCC
Confidence 99999999999876543
No 209
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=6.3e-17 Score=114.11 Aligned_cols=81 Identities=20% Similarity=0.367 Sum_probs=72.3
Q ss_pred CCCCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC--CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEecC
Q psy8956 223 LQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD--KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSG 300 (333)
Q Consensus 223 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~--~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~a~ 300 (333)
......++|||+|||..+++++|+++|++||.|. +.++.+ +++|||+|.+.++|.+|++.|||..|+|+.|+|.+++
T Consensus 14 ~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 92 (97)
T 2e5j_A 14 EGAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALAR 92 (97)
T ss_dssp SSSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECC
T ss_pred CCCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 3445678999999999999999999999999996 555544 8999999999999999999999999999999999998
Q ss_pred CCCC
Q psy8956 301 TKPG 304 (333)
Q Consensus 301 ~~~~ 304 (333)
++..
T Consensus 93 ~~~~ 96 (97)
T 2e5j_A 93 QQRD 96 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8753
No 210
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=5.3e-17 Score=116.14 Aligned_cols=83 Identities=22% Similarity=0.442 Sum_probs=76.3
Q ss_pred CCccceEEEecCCCCCCHHHHHHHhhc-cCCeeEEEeecC-----CcEEEEEECCHHHHHHHHHHhCCCe-eCCeeEEEE
Q psy8956 225 PARKNKIFVANLPSNINNSEFEELFAR-FGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHV-FKSKPLKVT 297 (333)
Q Consensus 225 ~~~~~~l~v~nl~~~~~~~~l~~~f~~-~g~v~~v~i~~~-----~~~~fV~f~~~~~A~~a~~~l~g~~-l~g~~l~v~ 297 (333)
..+.++|||+|||..+++++|+++|++ ||.|..+.++.+ +++|||+|.+.++|.+|++.|||.. |+|+.|.|.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 456789999999999999999999999 999999999876 7899999999999999999999999 999999999
Q ss_pred ecCCCCCCCC
Q psy8956 298 LSGTKPGVSI 307 (333)
Q Consensus 298 ~a~~~~~~~~ 307 (333)
+++.+.....
T Consensus 86 ~a~~~~~~~~ 95 (104)
T 2dhg_A 86 VAIPKASRVK 95 (104)
T ss_dssp BCCCCCSCCC
T ss_pred EccCCCcCCC
Confidence 9988765543
No 211
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.72 E-value=3.4e-17 Score=117.35 Aligned_cols=78 Identities=22% Similarity=0.298 Sum_probs=70.9
Q ss_pred CccceEEEecCCCCCCHHHHHHHhhccC-CeeEEEeec--CCcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEecCCC
Q psy8956 226 ARKNKIFVANLPSNINNSEFEELFARFG-TITSSSLVS--DKHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302 (333)
Q Consensus 226 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g-~v~~v~i~~--~~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~a~~~ 302 (333)
....+|||+|||..+++++|+++|++|| .|..+.+.. .+|+|||+|.+.++|.+|++.|||..|+|+.|+|.+++..
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~~ 105 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDNP 105 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC-
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence 3457999999999999999999999999 899999863 3899999999999999999999999999999999999865
Q ss_pred C
Q psy8956 303 P 303 (333)
Q Consensus 303 ~ 303 (333)
+
T Consensus 106 p 106 (111)
T 2jvr_A 106 P 106 (111)
T ss_dssp -
T ss_pred C
Confidence 4
No 212
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.72 E-value=4.5e-17 Score=113.79 Aligned_cols=80 Identities=24% Similarity=0.430 Sum_probs=74.4
Q ss_pred CCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC----CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEecC
Q psy8956 225 PARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSG 300 (333)
Q Consensus 225 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~----~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~a~ 300 (333)
..+.++|||+|||..+++++|+++|++||.|..+.+..+ +++|||+|.+.++|.+|++.|||..++|+.|+|.+++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 84 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDR 84 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 346789999999999999999999999999999999875 6899999999999999999999999999999999998
Q ss_pred CCCC
Q psy8956 301 TKPG 304 (333)
Q Consensus 301 ~~~~ 304 (333)
....
T Consensus 85 ~~~~ 88 (92)
T 2dgv_A 85 NASG 88 (92)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 8654
No 213
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.72 E-value=8e-18 Score=116.95 Aligned_cols=77 Identities=12% Similarity=0.147 Sum_probs=65.7
Q ss_pred ceEEEecCCCCCCHHHHHHHhhccC--CeeEEEeecC------CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEecC
Q psy8956 229 NKIFVANLPSNINNSEFEELFARFG--TITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSG 300 (333)
Q Consensus 229 ~~l~v~nl~~~~~~~~l~~~f~~~g--~v~~v~i~~~------~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~a~ 300 (333)
.+|||+|||..+++++|+++|++|| .|..++++.+ +|+|||+|.+.++|.+|++.|||..|+|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 9999998876 6799999999999999999999999999999999998
Q ss_pred CCCCC
Q psy8956 301 TKPGV 305 (333)
Q Consensus 301 ~~~~~ 305 (333)
+++..
T Consensus 82 ~~~~~ 86 (90)
T 3p5t_L 82 KLEHH 86 (90)
T ss_dssp -----
T ss_pred CCccc
Confidence 86543
No 214
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.72 E-value=3.4e-17 Score=115.24 Aligned_cols=80 Identities=23% Similarity=0.444 Sum_probs=72.2
Q ss_pred CCCccceEEEecCCC-CCCHHHHHHHhhccCCeeEEEeecCCcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEecCCC
Q psy8956 224 QPARKNKIFVANLPS-NINNSEFEELFARFGTITSSSLVSDKHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302 (333)
Q Consensus 224 ~~~~~~~l~v~nl~~-~~~~~~l~~~f~~~g~v~~v~i~~~~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~a~~~ 302 (333)
...++++|||+|||. .+++++|+++|++||.|..+.+. +++|||+|.+.++|.+|++.|||..++|++|.|.+++.+
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 83 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSSN 83 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEECC
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCcC
Confidence 345678999999998 99999999999999999999996 789999999999999999999999999999999999886
Q ss_pred CCC
Q psy8956 303 PGV 305 (333)
Q Consensus 303 ~~~ 305 (333)
...
T Consensus 84 ~~~ 86 (96)
T 2kvi_A 84 ARP 86 (96)
T ss_dssp CC-
T ss_pred CCC
Confidence 543
No 215
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.72 E-value=3.6e-17 Score=127.12 Aligned_cols=131 Identities=16% Similarity=0.187 Sum_probs=74.7
Q ss_pred EEeCCHHHHHHHHHHhCCceec--cceeEEEeeeecCCCc-------cCCCCCCCCCCCCccceEEEecCCCCCCHHHHH
Q psy8956 176 IQFFSYKAAEKAIIEMNGRMIQ--HNSTFVSLAEIVPGKK-------VFPKVKPPLLQPARKNKIFVANLPSNINNSEFE 246 (333)
Q Consensus 176 v~f~~~~~a~~a~~~l~~~~~~--~~~i~v~~~~~~~~~~-------~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~ 246 (333)
.+|.+.+++..++..+.+.... |+.............. ......+......++++|||+|||..+++++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 5778888888888877765543 4444433321111000 000012222344567899999999999999999
Q ss_pred HHhhccCCeeEEEeecC------CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEecCCCCCCC
Q psy8956 247 ELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKPGVS 306 (333)
Q Consensus 247 ~~f~~~g~v~~v~i~~~------~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~a~~~~~~~ 306 (333)
++|++||.|..|.++.+ +|||||+|.+.++|.+|+..|||..|+|+.|.|.||..+....
T Consensus 91 ~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~~ 156 (165)
T 1rk8_A 91 EKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGPKR 156 (165)
T ss_dssp HHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC---
T ss_pred HHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCCCC
Confidence 99999999999999876 6899999999999999999999999999999999998876543
No 216
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.72 E-value=4.6e-17 Score=119.75 Aligned_cols=80 Identities=19% Similarity=0.319 Sum_probs=72.5
Q ss_pred CCccceEEEecCCCCCCHHHHH----HHhhccCCeeEEEeecC---CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEE
Q psy8956 225 PARKNKIFVANLPSNINNSEFE----ELFARFGTITSSSLVSD---KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVT 297 (333)
Q Consensus 225 ~~~~~~l~v~nl~~~~~~~~l~----~~f~~~g~v~~v~i~~~---~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~ 297 (333)
..++++|||+|||..+++++|+ ++|++||.|..|.+... +|+|||+|.+.++|.+|++.|||..|.|++|+|.
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~ 105 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVIT 105 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEE
Confidence 4567899999999999999876 69999999999988653 8999999999999999999999999999999999
Q ss_pred ecCCCCC
Q psy8956 298 LSGTKPG 304 (333)
Q Consensus 298 ~a~~~~~ 304 (333)
||+.+..
T Consensus 106 ~a~~~~~ 112 (127)
T 2a3j_A 106 FSETPQS 112 (127)
T ss_dssp ECCCCCH
T ss_pred EccCcch
Confidence 9987653
No 217
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.71 E-value=2.3e-17 Score=118.04 Aligned_cols=79 Identities=15% Similarity=0.308 Sum_probs=72.6
Q ss_pred cccceEEEeCCCCCC------CHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCe-e
Q psy8956 32 YKENELHVNNLEPSV------DNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSK-P 104 (333)
Q Consensus 32 ~~~~~l~V~nLp~~~------t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~-~ 104 (333)
...++|||+|||+.+ |+++|+++|++||.|.++.+. ..+|.++|||||+|.+.++|.+|+..|+|..+.|+ .
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~-~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~ 91 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 91 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC-CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCE
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee-CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCce
Confidence 346789999999999 789999999999999999888 45888999999999999999999999999999998 9
Q ss_pred eEEeeec
Q psy8956 105 VIITFVE 111 (333)
Q Consensus 105 i~v~~~~ 111 (333)
|.|.++.
T Consensus 92 l~V~~a~ 98 (105)
T 2nlw_A 92 FRVNLFT 98 (105)
T ss_dssp EEEECSC
T ss_pred EEEEEcc
Confidence 9999873
No 218
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.71 E-value=6.4e-17 Score=114.55 Aligned_cols=79 Identities=27% Similarity=0.442 Sum_probs=72.7
Q ss_pred CCCCCccceEEEecCCCCCCHHHHHHHhhccCCeeE--------EEeecC------CcEEEEEECCHHHHHHHHHHhCCC
Q psy8956 222 LLQPARKNKIFVANLPSNINNSEFEELFARFGTITS--------SSLVSD------KHIGFIEFIMPKHATHAVSTMNGH 287 (333)
Q Consensus 222 ~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~--------v~i~~~------~~~~fV~f~~~~~A~~a~~~l~g~ 287 (333)
.....+.++|||+|||..+++++|+++|++||.|.. +++..+ +|+|||+|.+.++|.+|++.|||.
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~ 86 (99)
T 2la6_A 7 HHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK 86 (99)
T ss_dssp CCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 345567799999999999999999999999999999 888876 679999999999999999999999
Q ss_pred eeCCeeEEEEecC
Q psy8956 288 VFKSKPLKVTLSG 300 (333)
Q Consensus 288 ~l~g~~l~v~~a~ 300 (333)
.|+|+.|+|.+|+
T Consensus 87 ~~~g~~l~V~~A~ 99 (99)
T 2la6_A 87 EFSGNPIKVSFAT 99 (99)
T ss_dssp BSSSSBCEEEECC
T ss_pred EeCCcEEEEEecC
Confidence 9999999999985
No 219
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.71 E-value=1.4e-17 Score=123.92 Aligned_cols=80 Identities=11% Similarity=0.069 Sum_probs=75.1
Q ss_pred cccccceEEEeCCCCCCCHHHHHHHHhcCCC---eeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeE
Q psy8956 30 KVYKENELHVNNLEPSVDNQALINEFKKFGT---LRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVI 106 (333)
Q Consensus 30 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~---v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~ 106 (333)
.....++|||+|||+++|+++|+++|+.||. |.+|.++++..|.++|||||+|.+.++|.+|++ +++..+.|+.|.
T Consensus 40 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~ 118 (136)
T 2hgl_A 40 EGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIE 118 (136)
T ss_dssp SCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEE
Confidence 3456788999999999999999999999998 889999999889999999999999999999998 999999999999
Q ss_pred Eeee
Q psy8956 107 ITFV 110 (333)
Q Consensus 107 v~~~ 110 (333)
|.++
T Consensus 119 V~~a 122 (136)
T 2hgl_A 119 VFKS 122 (136)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 9876
No 220
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.71 E-value=1.7e-17 Score=124.16 Aligned_cols=83 Identities=28% Similarity=0.494 Sum_probs=77.6
Q ss_pred cccccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEe
Q psy8956 30 KVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIIT 108 (333)
Q Consensus 30 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~-~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~ 108 (333)
...+.++|||+|||+.+|+++|+++|+.||.|..+.+..+. ++.++|||||+|.+.++|.+|++.|+|..+.|+.|.|.
T Consensus 43 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 122 (135)
T 2lea_A 43 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQ 122 (135)
T ss_dssp SGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34567889999999999999999999999999999999987 88999999999999999999999999999999999999
Q ss_pred eecc
Q psy8956 109 FVEL 112 (333)
Q Consensus 109 ~~~~ 112 (333)
++..
T Consensus 123 ~a~~ 126 (135)
T 2lea_A 123 MARY 126 (135)
T ss_dssp ECCC
T ss_pred ECCC
Confidence 9843
No 221
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.71 E-value=5.3e-17 Score=114.12 Aligned_cols=78 Identities=27% Similarity=0.512 Sum_probs=73.1
Q ss_pred CCCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC-----CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEe
Q psy8956 224 QPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTL 298 (333)
Q Consensus 224 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~-----~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~ 298 (333)
...+.++|||+|||..+++++|+++|++||.|..+.+..+ +++|||+|.+.++|.+|++.|||..|+|++|+|.+
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSG 91 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEE
Confidence 4456789999999999999999999999999999999876 68999999999999999999999999999999999
Q ss_pred cCC
Q psy8956 299 SGT 301 (333)
Q Consensus 299 a~~ 301 (333)
|+.
T Consensus 92 a~~ 94 (95)
T 2ywk_A 92 PSS 94 (95)
T ss_dssp CCC
T ss_pred cCC
Confidence 874
No 222
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.71 E-value=4.6e-17 Score=120.71 Aligned_cols=82 Identities=24% Similarity=0.363 Sum_probs=75.7
Q ss_pred CCCCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC------CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEE
Q psy8956 223 LQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296 (333)
Q Consensus 223 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~------~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v 296 (333)
....+.++|||+|||..+++++|+++|++||.|..|.+..+ +++|||+|.+.++|.+|++.|||..|+|++|+|
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V 120 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 120 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34556789999999999999999999999999999999865 789999999999999999999999999999999
Q ss_pred EecCCCCC
Q psy8956 297 TLSGTKPG 304 (333)
Q Consensus 297 ~~a~~~~~ 304 (333)
.+++.+..
T Consensus 121 ~~a~~~~p 128 (129)
T 2kxn_B 121 DFSITKRP 128 (129)
T ss_dssp SCCSSSSC
T ss_pred EEecCCCC
Confidence 99988753
No 223
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.6e-16 Score=115.98 Aligned_cols=83 Identities=22% Similarity=0.374 Sum_probs=75.1
Q ss_pred CCCCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC------CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEE
Q psy8956 223 LQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296 (333)
Q Consensus 223 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~------~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v 296 (333)
....+.++|||+|||..+++++|+++|++||.|..++++.+ +++|||+|.+.++|.+|++.+++ .|+|+.|+|
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V 90 (116)
T 2cqd_A 12 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANV 90 (116)
T ss_dssp CCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEE
Confidence 34557799999999999999999999999999999999876 67999999999999999999998 899999999
Q ss_pred EecCCCCCCC
Q psy8956 297 TLSGTKPGVS 306 (333)
Q Consensus 297 ~~a~~~~~~~ 306 (333)
.+|..+....
T Consensus 91 ~~a~~~~~~~ 100 (116)
T 2cqd_A 91 NLAYLGAKPR 100 (116)
T ss_dssp EESTTTCCCC
T ss_pred EEcccCCCcc
Confidence 9998764443
No 224
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2.2e-16 Score=111.34 Aligned_cols=81 Identities=23% Similarity=0.436 Sum_probs=74.4
Q ss_pred CCCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecCCcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEecCCCC
Q psy8956 224 QPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKP 303 (333)
Q Consensus 224 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~a~~~~ 303 (333)
...+.++|||+|+ .+++++|+++|++||.|..+.+...+++|||+|.+.++|.+|++.|||..|+|+.|+|.+++.+.
T Consensus 11 ~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~ 88 (97)
T 1x5p_A 11 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQP 88 (97)
T ss_dssp CCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSCC
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCC
Confidence 4456789999996 89999999999999999999998889999999999999999999999999999999999998876
Q ss_pred CCC
Q psy8956 304 GVS 306 (333)
Q Consensus 304 ~~~ 306 (333)
...
T Consensus 89 ~~~ 91 (97)
T 1x5p_A 89 MLD 91 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 544
No 225
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=7.4e-17 Score=113.73 Aligned_cols=78 Identities=17% Similarity=0.289 Sum_probs=70.1
Q ss_pred cccccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEee
Q psy8956 30 KVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITF 109 (333)
Q Consensus 30 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~ 109 (333)
.....++|||+|||+.+++++|+++|++||.|. +.++.+ .++|||||+|.+.++|.+|++.|+|..+.|+.|.|.+
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~---~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 90 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ---GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVAL 90 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE---TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC---CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 345678999999999999999999999999986 556643 5789999999999999999999999999999999998
Q ss_pred ec
Q psy8956 110 VE 111 (333)
Q Consensus 110 ~~ 111 (333)
+.
T Consensus 91 a~ 92 (97)
T 2e5j_A 91 AR 92 (97)
T ss_dssp CC
T ss_pred cC
Confidence 84
No 226
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.71 E-value=8.8e-17 Score=116.16 Aligned_cols=74 Identities=19% Similarity=0.402 Sum_probs=69.0
Q ss_pred cccceEEEeCCCCC-CCHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeee
Q psy8956 32 YKENELHVNNLEPS-VDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFV 110 (333)
Q Consensus 32 ~~~~~l~V~nLp~~-~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~~ 110 (333)
...++|||+|||+. +++++|+++|++||.|..+.+ ++|||||+|.+.++|.+|++.|++..+.|+.|.|.++
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i-------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 97 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV-------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMA 97 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE-------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEES
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE-------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 44589999999999 999999999999999999988 4799999999999999999999999999999999998
Q ss_pred cc
Q psy8956 111 EL 112 (333)
Q Consensus 111 ~~ 112 (333)
..
T Consensus 98 ~~ 99 (110)
T 1wf1_A 98 GE 99 (110)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 227
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=9.4e-17 Score=111.54 Aligned_cols=75 Identities=20% Similarity=0.330 Sum_probs=69.2
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeec
Q psy8956 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVE 111 (333)
Q Consensus 32 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~~~ 111 (333)
.+.++|||+|||+.+|+++|+++|++||.|.++.+.+ +||||+|.+.++|.+|++.|+|..+.|+.|.|.++.
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~-------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 79 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK-------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELST 79 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS-------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECC
Confidence 4567899999999999999999999999999998883 489999999999999999999999999999999985
Q ss_pred cC
Q psy8956 112 LK 113 (333)
Q Consensus 112 ~~ 113 (333)
..
T Consensus 80 ~~ 81 (90)
T 2dnp_A 80 KG 81 (90)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 228
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.71 E-value=2.1e-17 Score=118.43 Aligned_cols=79 Identities=13% Similarity=0.053 Sum_probs=71.2
Q ss_pred ccccceEEEeCCCCCCCHHHHHHHHhcCC-CeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEee
Q psy8956 31 VYKENELHVNNLEPSVDNQALINEFKKFG-TLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITF 109 (333)
Q Consensus 31 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g-~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~ 109 (333)
+....+|||+|||+++++++|+++|++|| .|..+.+... .++|||||+|.+.++|.+|++.|||..+.|+.|.|.+
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~---~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~ 101 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR---DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVER 101 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC---SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC---CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 34567899999999999999999999999 8998887533 4789999999999999999999999999999999998
Q ss_pred ecc
Q psy8956 110 VEL 112 (333)
Q Consensus 110 ~~~ 112 (333)
+..
T Consensus 102 a~~ 104 (111)
T 2jvr_A 102 DDN 104 (111)
T ss_dssp SCC
T ss_pred CCC
Confidence 843
No 229
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.71 E-value=7.3e-17 Score=111.53 Aligned_cols=82 Identities=22% Similarity=0.348 Sum_probs=75.6
Q ss_pred ccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecCCcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEecCCCCCCC
Q psy8956 227 RKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKPGVS 306 (333)
Q Consensus 227 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~a~~~~~~~ 306 (333)
..++|||+|||..+++++|+++|++| .|..+.+...+|+|||+|.+.++|.+|++.|||..++|++|+|.+++.+....
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~~~~ 82 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVDRNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTDALLC 82 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEEGGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCCCCCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEeCCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCCceEe
Confidence 45899999999999999999999999 99999998779999999999999999999999999999999999998877655
Q ss_pred CCC
Q psy8956 307 ITN 309 (333)
Q Consensus 307 ~~~ 309 (333)
..+
T Consensus 83 ~~n 85 (88)
T 1wg1_A 83 SGP 85 (88)
T ss_dssp CCC
T ss_pred cCC
Confidence 444
No 230
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1e-16 Score=115.60 Aligned_cols=80 Identities=23% Similarity=0.386 Sum_probs=73.3
Q ss_pred ccccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeee
Q psy8956 31 VYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFV 110 (333)
Q Consensus 31 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~~ 110 (333)
....++|||+|||+.+++++|+++|..||.|..+.+.++ +|||||+|.+.++|.+|+..|+|..+.|+.|.|.++
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 96 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 96 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-----CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEec
Confidence 345789999999999999999999999999999999875 899999999999999999999999999999999998
Q ss_pred ccCCC
Q psy8956 111 ELKPG 115 (333)
Q Consensus 111 ~~~~~ 115 (333)
...+.
T Consensus 97 ~~~~~ 101 (109)
T 1x4g_A 97 KESPD 101 (109)
T ss_dssp CCCCS
T ss_pred CCCCC
Confidence 54443
No 231
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=1e-16 Score=115.87 Aligned_cols=81 Identities=26% Similarity=0.448 Sum_probs=74.5
Q ss_pred CCCccceEEEecCCCCCCHHHHH---HHhhccCCeeEEEeecC---------CcEEEEEECCHHHHHHHHHHhCCCeeCC
Q psy8956 224 QPARKNKIFVANLPSNINNSEFE---ELFARFGTITSSSLVSD---------KHIGFIEFIMPKHATHAVSTMNGHVFKS 291 (333)
Q Consensus 224 ~~~~~~~l~v~nl~~~~~~~~l~---~~f~~~g~v~~v~i~~~---------~~~~fV~f~~~~~A~~a~~~l~g~~l~g 291 (333)
.....++|||+|||..+++++|+ ++|++||.|..+.+..+ +|+|||+|.+.++|.+|++.|||..|+|
T Consensus 11 r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 90 (111)
T 2cpi_A 11 RVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG 90 (111)
T ss_dssp CCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC
Confidence 33456899999999999999999 99999999999999876 2699999999999999999999999999
Q ss_pred eeEEEEecCCCCC
Q psy8956 292 KPLKVTLSGTKPG 304 (333)
Q Consensus 292 ~~l~v~~a~~~~~ 304 (333)
++|+|.+|+++..
T Consensus 91 r~l~V~~a~~k~~ 103 (111)
T 2cpi_A 91 RTLKASLGTTKYC 103 (111)
T ss_dssp EEEEEESCCCCSC
T ss_pred EEEEEEecccccc
Confidence 9999999998863
No 232
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=5.1e-17 Score=113.67 Aligned_cols=80 Identities=21% Similarity=0.353 Sum_probs=71.6
Q ss_pred CccceEEEecCCCCCCHHHHHHHhhccCC-eeEEEeecCCcEEEEEECCHHHHHHHHHHhCC-CeeCCeeEEEEecCCCC
Q psy8956 226 ARKNKIFVANLPSNINNSEFEELFARFGT-ITSSSLVSDKHIGFIEFIMPKHATHAVSTMNG-HVFKSKPLKVTLSGTKP 303 (333)
Q Consensus 226 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~-v~~v~i~~~~~~~fV~f~~~~~A~~a~~~l~g-~~l~g~~l~v~~a~~~~ 303 (333)
...++|||+|||..+++++|+++|++||. |..+.+ ..+++|||+|.+.++|.+|++.||| ..|+|+.|+|.+++.+.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~-~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~~ 84 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL-LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVSKK 84 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE-EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE-cCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccCcc
Confidence 45689999999999999999999999999 655555 4579999999999999999999999 99999999999999875
Q ss_pred CCC
Q psy8956 304 GVS 306 (333)
Q Consensus 304 ~~~ 306 (333)
.+.
T Consensus 85 ~~~ 87 (93)
T 2cqh_A 85 LRS 87 (93)
T ss_dssp CCC
T ss_pred ccC
Confidence 543
No 233
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=1.4e-16 Score=111.11 Aligned_cols=76 Identities=18% Similarity=0.386 Sum_probs=69.7
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeec
Q psy8956 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVE 111 (333)
Q Consensus 32 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~~~ 111 (333)
...++|||+|||+.+++++|+++|++||.|.++.+.+ +||||+|.+.++|.+|+..|++..+.|+.|.|.++.
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~-------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 80 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK-------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLST 80 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS-------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC-------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 4568899999999999999999999999999998873 499999999999999999999999999999999985
Q ss_pred cCC
Q psy8956 112 LKP 114 (333)
Q Consensus 112 ~~~ 114 (333)
.+.
T Consensus 81 ~~~ 83 (92)
T 2dgt_A 81 SRL 83 (92)
T ss_dssp CCC
T ss_pred CCC
Confidence 443
No 234
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.70 E-value=2.3e-16 Score=119.08 Aligned_cols=84 Identities=27% Similarity=0.520 Sum_probs=76.9
Q ss_pred CCCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC------CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEE
Q psy8956 224 QPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVT 297 (333)
Q Consensus 224 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~------~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~ 297 (333)
.....++|||+|||..+++++|+++|++||.|..|.++.+ +++|||+|.+.++|.+|++.|||..|+|+.|+|.
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 4456789999999999999999999999999999999865 6799999999999999999999999999999999
Q ss_pred ecCCCCCCCC
Q psy8956 298 LSGTKPGVSI 307 (333)
Q Consensus 298 ~a~~~~~~~~ 307 (333)
+|+.+..+..
T Consensus 118 ~a~~~~~~~~ 127 (139)
T 1u6f_A 118 LAASGHQRPG 127 (139)
T ss_dssp ESSCCCCCCC
T ss_pred ECCCCCCCCC
Confidence 9998766543
No 235
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.70 E-value=1.4e-17 Score=119.55 Aligned_cols=80 Identities=18% Similarity=0.199 Sum_probs=74.6
Q ss_pred cccccceEEEeCCCCCCCHHHHHHHHhcCCC---eeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeE
Q psy8956 30 KVYKENELHVNNLEPSVDNQALINEFKKFGT---LRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVI 106 (333)
Q Consensus 30 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~---v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~ 106 (333)
.....++|||+|||+++|+++|+++|..||. |.++.+..+..|.++|||||+|.+.++|.+|++ +++..+.|+.|.
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~ 85 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVE 85 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCC
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEE
Confidence 3456788999999999999999999999997 899999999889999999999999999999998 999999999999
Q ss_pred Eeee
Q psy8956 107 ITFV 110 (333)
Q Consensus 107 v~~~ 110 (333)
|.++
T Consensus 86 V~~a 89 (107)
T 2lmi_A 86 VYEI 89 (107)
T ss_dssp CEEC
T ss_pred EEEC
Confidence 9877
No 236
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=3.9e-17 Score=120.65 Aligned_cols=82 Identities=18% Similarity=0.268 Sum_probs=73.3
Q ss_pred cCcccccceEEEeCCCCCCCHHHHHHHHhcCCCeeE-EEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeE
Q psy8956 28 NNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD-VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVI 106 (333)
Q Consensus 28 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~-v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~ 106 (333)
.......++|||+|||+.+|+++|+++|..||.|.. +.+..+.+|.++|||||+|.+.++|.+||+ |++..|.|+.|.
T Consensus 19 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~ 97 (124)
T 1wel_A 19 RSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQ 97 (124)
T ss_dssp SSCCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBE
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEE
Confidence 344566789999999999999999999999999877 444555589999999999999999999998 999999999999
Q ss_pred Eeee
Q psy8956 107 ITFV 110 (333)
Q Consensus 107 v~~~ 110 (333)
|.++
T Consensus 98 V~~a 101 (124)
T 1wel_A 98 VHPI 101 (124)
T ss_dssp EEEE
T ss_pred EEEC
Confidence 9987
No 237
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.70 E-value=1.3e-16 Score=112.33 Aligned_cols=79 Identities=18% Similarity=0.318 Sum_probs=69.5
Q ss_pred CCcCcccccceEEEeCCCC-CCCHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCee
Q psy8956 26 KENNKVYKENELHVNNLEP-SVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKP 104 (333)
Q Consensus 26 ~~~~~~~~~~~l~V~nLp~-~~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~ 104 (333)
.......+.++|||+|||+ .+++++|+++|+.||.|.++.+. +|||||+|.+.++|.+|++.|+|..+.|+.
T Consensus 14 ~~~~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 86 (97)
T 2xnq_A 14 LVPRGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIEXESQEMNFGKK 86 (97)
T ss_dssp -----CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC-------SSEEEEEESSHHHHHHHHHHHTTSEETTEE
T ss_pred cccCCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------CCEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 3444456788999999998 99999999999999999999873 789999999999999999999999999999
Q ss_pred eEEeeec
Q psy8956 105 VIITFVE 111 (333)
Q Consensus 105 i~v~~~~ 111 (333)
|.|.++.
T Consensus 87 l~V~~a~ 93 (97)
T 2xnq_A 87 LILEVSS 93 (97)
T ss_dssp CEEEECC
T ss_pred EEEEecC
Confidence 9999884
No 238
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=1.1e-16 Score=115.67 Aligned_cols=77 Identities=21% Similarity=0.290 Sum_probs=70.9
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeec
Q psy8956 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVE 111 (333)
Q Consensus 32 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~~~ 111 (333)
...++|||+|||+.+|+++|+++|++||.|..+.+.+ ++|||||+|.+.++|.+|+..|||..+.|+.|.|.++.
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE-----GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS-----SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC-----CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 3467899999999999999999999999999998775 58899999999999999999999999999999999985
Q ss_pred cC
Q psy8956 112 LK 113 (333)
Q Consensus 112 ~~ 113 (333)
..
T Consensus 83 ~~ 84 (111)
T 1whx_A 83 IG 84 (111)
T ss_dssp TT
T ss_pred CC
Confidence 43
No 239
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=8.9e-17 Score=110.46 Aligned_cols=74 Identities=23% Similarity=0.350 Sum_probs=69.2
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHh-cCCccCCeeeEEeee
Q psy8956 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEM-NGHLIGSKPVIITFV 110 (333)
Q Consensus 32 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l-~~~~~~g~~i~v~~~ 110 (333)
.+.++|||+|||+.+++++|+++|++||.|.++.+.+ ++|+|||+|.+.++|.+|++.| ++..+.|+.|.|+++
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~-----~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~a 84 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ-----RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWG 84 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG-----GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEEC
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC-----CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEec
Confidence 4557899999999999999999999999999999997 4899999999999999999988 999999999999986
No 240
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.70 E-value=7.4e-17 Score=115.80 Aligned_cols=77 Identities=23% Similarity=0.466 Sum_probs=70.3
Q ss_pred cCcccccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEE
Q psy8956 28 NNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVII 107 (333)
Q Consensus 28 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v 107 (333)
.......++|||+|||+.+|+++|+++|++||.|..+.+. +|||||+|.+.++|.+|++.|+|..+.|+.|.|
T Consensus 25 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 97 (108)
T 2jvo_A 25 QEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEV 97 (108)
T ss_dssp ---CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 3445677999999999999999999999999999999888 689999999999999999999999999999999
Q ss_pred eeec
Q psy8956 108 TFVE 111 (333)
Q Consensus 108 ~~~~ 111 (333)
.++.
T Consensus 98 ~~a~ 101 (108)
T 2jvo_A 98 VYSK 101 (108)
T ss_dssp ESCS
T ss_pred EEec
Confidence 9884
No 241
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.70 E-value=2e-16 Score=112.89 Aligned_cols=81 Identities=23% Similarity=0.402 Sum_probs=73.4
Q ss_pred CCCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC------CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEE
Q psy8956 224 QPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVT 297 (333)
Q Consensus 224 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~------~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~ 297 (333)
...+.++|||+|||..+++++|+++|++|| |..|.++.+ +++|||+|.+.++|.+|+ .|||..|+|+.|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 88 (103)
T 2dng_A 11 PTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVD 88 (103)
T ss_dssp CSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEE
Confidence 345678999999999999999999999997 999999876 579999999999999999 899999999999999
Q ss_pred ecCCCCCCC
Q psy8956 298 LSGTKPGVS 306 (333)
Q Consensus 298 ~a~~~~~~~ 306 (333)
+++.+....
T Consensus 89 ~a~~~~~~~ 97 (103)
T 2dng_A 89 IAEGRKQDK 97 (103)
T ss_dssp ECCCCCCCC
T ss_pred EecCCCCCC
Confidence 998876543
No 242
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.70 E-value=9.1e-17 Score=113.37 Aligned_cols=80 Identities=26% Similarity=0.505 Sum_probs=73.7
Q ss_pred CCccceEEEecCCCCCCHHHHH----HHhhccCCeeEEEeecC---CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEE
Q psy8956 225 PARKNKIFVANLPSNINNSEFE----ELFARFGTITSSSLVSD---KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVT 297 (333)
Q Consensus 225 ~~~~~~l~v~nl~~~~~~~~l~----~~f~~~g~v~~v~i~~~---~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~ 297 (333)
..++++|||+|||..+++++|+ ++|++||.|..+.+... +|+|||+|.+.++|.+|++.|||..++|+.|.|.
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQ 84 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 4567899999999999999999 99999999999998843 8999999999999999999999999999999999
Q ss_pred ecCCCCC
Q psy8956 298 LSGTKPG 304 (333)
Q Consensus 298 ~a~~~~~ 304 (333)
+++.+..
T Consensus 85 ~a~~~~~ 91 (97)
T 1nu4_A 85 YAKTDSD 91 (97)
T ss_dssp ECSSCCT
T ss_pred EccCCCc
Confidence 9998653
No 243
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=1.5e-16 Score=114.38 Aligned_cols=77 Identities=19% Similarity=0.238 Sum_probs=71.1
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCC-----eeeE
Q psy8956 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGS-----KPVI 106 (333)
Q Consensus 32 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g-----~~i~ 106 (333)
...++|||+|||+++|+++|+++|.+||.|..+.+..+ |||||+|.+.++|.+|++.|++..+.| +.|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~ 86 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 86 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEE
Confidence 45688999999999999999999999999999999875 899999999999999999999999999 9999
Q ss_pred EeeeccCC
Q psy8956 107 ITFVELKP 114 (333)
Q Consensus 107 v~~~~~~~ 114 (333)
|.++..+.
T Consensus 87 V~~a~~~~ 94 (108)
T 1x4c_A 87 VKVDGPRS 94 (108)
T ss_dssp EEESSCCS
T ss_pred EEeCCCCC
Confidence 99885443
No 244
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2.8e-16 Score=111.26 Aligned_cols=77 Identities=23% Similarity=0.404 Sum_probs=69.8
Q ss_pred ccccceEEEeCCCCCCCHHHHHHHHhcC--CCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEe
Q psy8956 31 VYKENELHVNNLEPSVDNQALINEFKKF--GTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIIT 108 (333)
Q Consensus 31 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~--g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~ 108 (333)
..+.++|||+|||+.+|+++|+++|++| |.|..+.+. +|||||+|.+.++|.+|+..|+|..+.|+.|.|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI-------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVT 84 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC-------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe-------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 4567899999999999999999999999 899988765 6799999999999999999999999999999999
Q ss_pred eeccCC
Q psy8956 109 FVELKP 114 (333)
Q Consensus 109 ~~~~~~ 114 (333)
++....
T Consensus 85 ~a~~~~ 90 (99)
T 2cpd_A 85 LAKPVD 90 (99)
T ss_dssp CCCCCC
T ss_pred ECCCCC
Confidence 985433
No 245
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.70 E-value=3.5e-16 Score=115.55 Aligned_cols=83 Identities=22% Similarity=0.394 Sum_probs=75.9
Q ss_pred CCCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC-----CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEe
Q psy8956 224 QPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTL 298 (333)
Q Consensus 224 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~-----~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~ 298 (333)
...++++|||+|||..+++++|+++|++||.|..+.+..+ +++|||+|.+.++|.+|++.|||..|+|+.|+|.+
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 4456789999999999999999999999999999999875 78999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q psy8956 299 SGTKPGVS 306 (333)
Q Consensus 299 a~~~~~~~ 306 (333)
|.......
T Consensus 111 a~~~~~~~ 118 (124)
T 2kt5_A 111 VASQIDLE 118 (124)
T ss_dssp ECCTTCCC
T ss_pred eCCCCCCC
Confidence 98865443
No 246
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.70 E-value=2.2e-16 Score=112.57 Aligned_cols=77 Identities=31% Similarity=0.433 Sum_probs=70.1
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeec
Q psy8956 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVE 111 (333)
Q Consensus 32 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~~~ 111 (333)
.+.++|||+|||+.+|+++|+++|++||.|..+.+. ++||||+|.+.++|.+|++.|++..+.|+.|.|.++.
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~-------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 81 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL-------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAK 81 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC-------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcC
Confidence 456789999999999999999999999999999887 4699999999999999999999999999999999985
Q ss_pred cCCC
Q psy8956 112 LKPG 115 (333)
Q Consensus 112 ~~~~ 115 (333)
....
T Consensus 82 ~~~~ 85 (103)
T 2dgu_A 82 PPDQ 85 (103)
T ss_dssp CCCC
T ss_pred CCcc
Confidence 4443
No 247
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2.9e-16 Score=112.26 Aligned_cols=81 Identities=20% Similarity=0.377 Sum_probs=73.9
Q ss_pred CCCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC-------CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEE
Q psy8956 224 QPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296 (333)
Q Consensus 224 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~-------~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v 296 (333)
...+.++|||+|||..+++++|+++|++|| |..|.++.+ +++|||+|.+.++|.+|+ .|||..|+|+.|.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 88 (104)
T 1wi8_A 11 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRV 88 (104)
T ss_dssp CSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEE
Confidence 445678999999999999999999999999 999999865 679999999999999999 99999999999999
Q ss_pred EecCCCCCCC
Q psy8956 297 TLSGTKPGVS 306 (333)
Q Consensus 297 ~~a~~~~~~~ 306 (333)
.+++.+....
T Consensus 89 ~~a~~~~~~~ 98 (104)
T 1wi8_A 89 DVADQAQDKD 98 (104)
T ss_dssp EECCCCCCCC
T ss_pred EEccCCCCCC
Confidence 9999876543
No 248
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.70 E-value=2.8e-17 Score=116.07 Aligned_cols=79 Identities=27% Similarity=0.457 Sum_probs=72.2
Q ss_pred cccceEEEeCCCCCCCHHHHH----HHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEE
Q psy8956 32 YKENELHVNNLEPSVDNQALI----NEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVII 107 (333)
Q Consensus 32 ~~~~~l~V~nLp~~~t~~~l~----~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v 107 (333)
.+.++|||+|||+.+++++|+ ++|++||.|.++.+.. ++.++|||||+|.+.++|.+|++.|+|..+.|+.|.|
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 83 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH--HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc--CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEE
Confidence 456889999999999999999 9999999999988774 4667899999999999999999999999999999999
Q ss_pred eeecc
Q psy8956 108 TFVEL 112 (333)
Q Consensus 108 ~~~~~ 112 (333)
.++..
T Consensus 84 ~~a~~ 88 (97)
T 1nu4_A 84 QYAKT 88 (97)
T ss_dssp EECSS
T ss_pred EEccC
Confidence 99843
No 249
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=8.8e-17 Score=113.88 Aligned_cols=80 Identities=15% Similarity=0.297 Sum_probs=73.9
Q ss_pred CCccceEEEecCCCCCCHHHHHHHhhccCCee-EEEeecC------CcEEEEEECCHHHHHHHHHHhCCCeeCCee----
Q psy8956 225 PARKNKIFVANLPSNINNSEFEELFARFGTIT-SSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKP---- 293 (333)
Q Consensus 225 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~-~v~i~~~------~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~---- 293 (333)
..++++|||+|||..+++++|+++|++||.|. .+.++.+ +++|||+|.+.++|.+|++.|||..++|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 45678999999999999999999999999999 9999876 489999999999999999999999999999
Q ss_pred EEEEecCCCCC
Q psy8956 294 LKVTLSGTKPG 304 (333)
Q Consensus 294 l~v~~a~~~~~ 304 (333)
|+|.+|+....
T Consensus 86 l~v~~a~~~~~ 96 (99)
T 2div_A 86 FKLNYATYSGP 96 (99)
T ss_dssp CCEEETTCCSS
T ss_pred EEEeecCCCCC
Confidence 99999987643
No 250
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.69 E-value=1.5e-17 Score=111.44 Aligned_cols=74 Identities=22% Similarity=0.415 Sum_probs=69.2
Q ss_pred eEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeee
Q psy8956 36 ELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFV 110 (333)
Q Consensus 36 ~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~-~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~~ 110 (333)
+|||+|||+.+++++|+++|++||.|.++.+.++. ++.++|||||+|.+.++|.+|++ +++..+.|+.+.|+++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 58999999999999999999999999999999887 78899999999999999999997 4888999999998764
No 251
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=2.1e-16 Score=114.00 Aligned_cols=82 Identities=13% Similarity=0.234 Sum_probs=73.9
Q ss_pred CCccceEEEecCCCCCCHHHHHHHhhccCC-eeEEEee-------cCCcEEEEEECCHHHHHHHHHHhC--CCeeCCeeE
Q psy8956 225 PARKNKIFVANLPSNINNSEFEELFARFGT-ITSSSLV-------SDKHIGFIEFIMPKHATHAVSTMN--GHVFKSKPL 294 (333)
Q Consensus 225 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~-v~~v~i~-------~~~~~~fV~f~~~~~A~~a~~~l~--g~~l~g~~l 294 (333)
..+.++|||+|||..+++++|+++|++||. |..+.++ ..+++|||+|.+.++|.+|++.|+ +..++|+.|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 345689999999999999999999999998 9999998 338899999999999999999996 589999999
Q ss_pred EEEecCCCCCCC
Q psy8956 295 KVTLSGTKPGVS 306 (333)
Q Consensus 295 ~v~~a~~~~~~~ 306 (333)
+|.+|+++....
T Consensus 85 ~V~~a~~~~~~~ 96 (109)
T 2dis_A 85 AVDWAEPEIDVD 96 (109)
T ss_dssp EEEESCSSCSTT
T ss_pred EEEEcCCCCCcC
Confidence 999999876543
No 252
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=7.9e-17 Score=114.34 Aligned_cols=76 Identities=14% Similarity=0.292 Sum_probs=70.9
Q ss_pred CCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC-----CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEec
Q psy8956 225 PARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299 (333)
Q Consensus 225 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~-----~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~a 299 (333)
....++|||+|||..+++++|+++|++||.|..|.++.+ +|+|||+|.+.++|.+|+. ++|..|+|+.|.|.++
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 345689999999999999999999999999999999875 7999999999999999999 9999999999999987
Q ss_pred CC
Q psy8956 300 GT 301 (333)
Q Consensus 300 ~~ 301 (333)
..
T Consensus 87 ~~ 88 (103)
T 1s79_A 87 DD 88 (103)
T ss_dssp HH
T ss_pred hH
Confidence 55
No 253
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.69 E-value=1.4e-16 Score=110.55 Aligned_cols=75 Identities=21% Similarity=0.436 Sum_probs=70.7
Q ss_pred ccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC------CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEecC
Q psy8956 227 RKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSG 300 (333)
Q Consensus 227 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~------~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~a~ 300 (333)
..++|||+|||..+++++|+++|++||.|..+.+..+ +++|||+|.+.++|.+|+ .|||..++|+.|+|.+++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 4579999999999999999999999999999999876 779999999999999999 899999999999999998
Q ss_pred CC
Q psy8956 301 TK 302 (333)
Q Consensus 301 ~~ 302 (333)
+.
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 74
No 254
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.69 E-value=1.3e-16 Score=116.83 Aligned_cols=78 Identities=29% Similarity=0.554 Sum_probs=71.9
Q ss_pred CCCCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC------CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEE
Q psy8956 223 LQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296 (333)
Q Consensus 223 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~------~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v 296 (333)
....+.++|||+|||..+++++|+++|++||.|..+.+..+ +++|||+|.+.++|.+|++.|||..|+|+.|+|
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 114 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKV 114 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34556789999999999999999999999999999999865 789999999999999999999999999999999
Q ss_pred EecC
Q psy8956 297 TLSG 300 (333)
Q Consensus 297 ~~a~ 300 (333)
.+++
T Consensus 115 ~~ak 118 (118)
T 2khc_A 115 QLKK 118 (118)
T ss_dssp EEC-
T ss_pred EecC
Confidence 9985
No 255
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=1.5e-16 Score=107.48 Aligned_cols=76 Identities=18% Similarity=0.279 Sum_probs=67.6
Q ss_pred ccce-EEEecCCCCCCHHH----HHHHhhccC-CeeEEEeecCCcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEecC
Q psy8956 227 RKNK-IFVANLPSNINNSE----FEELFARFG-TITSSSLVSDKHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSG 300 (333)
Q Consensus 227 ~~~~-l~v~nl~~~~~~~~----l~~~f~~~g-~v~~v~i~~~~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~a~ 300 (333)
++.+ |||+|||..+++++ |+++|++|| .|.+|. .|+|||.|.+.++|.+|++.|+|..+.||+|+|+||+
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt----gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~ 82 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT----GCSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTP 82 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC----TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSC
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe----cCEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecC
Confidence 4455 99999999999988 558999995 998883 3999999999999999999999999999999999999
Q ss_pred CCCCCC
Q psy8956 301 TKPGVS 306 (333)
Q Consensus 301 ~~~~~~ 306 (333)
.+...-
T Consensus 83 ~~sd~~ 88 (96)
T 2diu_A 83 KNRELC 88 (96)
T ss_dssp CSCCCC
T ss_pred CCccee
Confidence 977654
No 256
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.69 E-value=1e-16 Score=113.99 Aligned_cols=75 Identities=16% Similarity=0.248 Sum_probs=70.0
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeec
Q psy8956 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVE 111 (333)
Q Consensus 32 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~~~ 111 (333)
...++|||+|||.++++++|+++|+.||.|.++.+.+ ++|||||+|.+.++|.+|+..|+|..+.|+.|.|.++.
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP-----EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 99 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET-----TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec-----CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence 4468899999999999999999999999999999883 58999999999999999999999999999999999873
No 257
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.69 E-value=2.8e-16 Score=113.51 Aligned_cols=78 Identities=24% Similarity=0.554 Sum_probs=71.9
Q ss_pred CCccceEEEecCCCC-CCHHHHHHHhhccCCeeEEEeecCCcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEecCCCC
Q psy8956 225 PARKNKIFVANLPSN-INNSEFEELFARFGTITSSSLVSDKHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKP 303 (333)
Q Consensus 225 ~~~~~~l~v~nl~~~-~~~~~l~~~f~~~g~v~~v~i~~~~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~a~~~~ 303 (333)
....++|||+|||.. +++++|+++|++||.|..+.+ .+++|||+|.+.++|.+|++.|||..|+|+.|+|.+++.+.
T Consensus 24 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 101 (110)
T 1wf1_A 24 KSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEPK 101 (110)
T ss_dssp TTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCCC
T ss_pred CCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCCC
Confidence 345689999999999 999999999999999999999 47999999999999999999999999999999999998654
Q ss_pred C
Q psy8956 304 G 304 (333)
Q Consensus 304 ~ 304 (333)
.
T Consensus 102 ~ 102 (110)
T 1wf1_A 102 P 102 (110)
T ss_dssp S
T ss_pred C
Confidence 3
No 258
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.69 E-value=1.5e-16 Score=117.97 Aligned_cols=83 Identities=20% Similarity=0.329 Sum_probs=76.3
Q ss_pred CCCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC------CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEE
Q psy8956 224 QPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVT 297 (333)
Q Consensus 224 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~------~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~ 297 (333)
...+.++|||+|||..+++++|+++|++||.|..|.++.+ +++|||+|.+.++|.+|++.|||..|+|+.|.|.
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 97 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 97 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 4456789999999999999999999999999999999866 7899999999999999999999999999999999
Q ss_pred ecCCCCCCC
Q psy8956 298 LSGTKPGVS 306 (333)
Q Consensus 298 ~a~~~~~~~ 306 (333)
+|..+....
T Consensus 98 ~a~~~~~~~ 106 (126)
T 3ex7_B 98 WCFVRGPPK 106 (126)
T ss_dssp ESEESSSCC
T ss_pred EecCCCCCC
Confidence 998776543
No 259
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.9e-16 Score=115.49 Aligned_cols=83 Identities=28% Similarity=0.322 Sum_probs=72.8
Q ss_pred CcccccceEEEeCCCCCCCHHHHHHHHhcCCCe----eEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCee
Q psy8956 29 NKVYKENELHVNNLEPSVDNQALINEFKKFGTL----RDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKP 104 (333)
Q Consensus 29 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v----~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~ 104 (333)
....+.++|||+|||+.+|+++|+++|..||.| ..+.+. ++.++|||||+|.+.++|.+|++.|+|..+.|+.
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~---~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 96 (115)
T 2cpx_A 20 NPGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM---TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKI 96 (115)
T ss_dssp CCCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE---CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCB
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC---CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcE
Confidence 334567899999999999999999999999988 444444 7788999999999999999999999999999999
Q ss_pred eEEeeeccCC
Q psy8956 105 VIITFVELKP 114 (333)
Q Consensus 105 i~v~~~~~~~ 114 (333)
|.|.++....
T Consensus 97 l~v~~a~~~~ 106 (115)
T 2cpx_A 97 LVIEFGKNKK 106 (115)
T ss_dssp CEEEECCCCS
T ss_pred EEEEEccCCC
Confidence 9999985443
No 260
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.69 E-value=3.8e-17 Score=115.76 Aligned_cols=76 Identities=17% Similarity=0.237 Sum_probs=71.3
Q ss_pred ccceEEEecCCC------CCCHHHHHHHhhccCCeeEEEeecC------CcEEEEEECCHHHHHHHHHHhCCCeeCC-ee
Q psy8956 227 RKNKIFVANLPS------NINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKS-KP 293 (333)
Q Consensus 227 ~~~~l~v~nl~~------~~~~~~l~~~f~~~g~v~~v~i~~~------~~~~fV~f~~~~~A~~a~~~l~g~~l~g-~~ 293 (333)
..++|||+|||. .+++++|+++|++||.|..++++.+ +|+|||+|.+.++|.+|++.|||..|+| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 468999999999 9999999999999999999999865 7899999999999999999999999999 99
Q ss_pred EEEEecCCC
Q psy8956 294 LKVTLSGTK 302 (333)
Q Consensus 294 l~v~~a~~~ 302 (333)
|+|.+|.++
T Consensus 85 l~V~~a~~~ 93 (100)
T 3ns6_A 85 LFLYTMKDV 93 (100)
T ss_dssp CEEEESHHH
T ss_pred EEEEECchh
Confidence 999999764
No 261
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=2.7e-16 Score=106.25 Aligned_cols=75 Identities=20% Similarity=0.228 Sum_probs=65.4
Q ss_pred cce-EEEeCCCCCCCHHH----HHHHHhcCC-CeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEE
Q psy8956 34 ENE-LHVNNLEPSVDNQA----LINEFKKFG-TLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVII 107 (333)
Q Consensus 34 ~~~-l~V~nLp~~~t~~~----l~~~f~~~g-~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v 107 (333)
..+ |||+|||+.+++++ |+++|++|| .|.+| ++ |+|||+|.+.++|.+|++.|+|..+.|+.|+|
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v 78 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI------TG---CSAILRFINQDSAERAQKRMENEDVFGNRIIV 78 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEEE
Confidence 444 99999999999988 558999995 99987 23 99999999999999999999999999999999
Q ss_pred eeeccCCCCC
Q psy8956 108 TFVELKPGQR 117 (333)
Q Consensus 108 ~~~~~~~~~~ 117 (333)
.|+..+....
T Consensus 79 ~~A~~~sd~~ 88 (96)
T 2diu_A 79 SFTPKNRELC 88 (96)
T ss_dssp ESSCCSCCCC
T ss_pred EecCCCccee
Confidence 9996555443
No 262
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=3.3e-16 Score=111.53 Aligned_cols=80 Identities=23% Similarity=0.378 Sum_probs=71.8
Q ss_pred ccccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEee
Q psy8956 31 VYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITF 109 (333)
Q Consensus 31 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~-~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~ 109 (333)
..+.++|||+|||+.+|+++|+++|+.|+ .+.++.+. ++.++|||||+|.+.++|.+|++.|++..+.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 88 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 35568899999999999999999999885 56677776 888999999999999999999999999999999999999
Q ss_pred eccC
Q psy8956 110 VELK 113 (333)
Q Consensus 110 ~~~~ 113 (333)
+..+
T Consensus 89 a~~~ 92 (102)
T 2fc8_A 89 AKPK 92 (102)
T ss_dssp CCCC
T ss_pred ecCC
Confidence 8543
No 263
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.69 E-value=2.1e-16 Score=113.61 Aligned_cols=76 Identities=25% Similarity=0.439 Sum_probs=71.7
Q ss_pred CCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC-----CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEec
Q psy8956 225 PARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299 (333)
Q Consensus 225 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~-----~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~a 299 (333)
..+.++|||+|||..+++++|+++|++||.|..+.+..+ +++|||+|.+.++|.+|++.|||..|+|+.|+|.+|
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 105 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 356789999999999999999999999999999999866 789999999999999999999999999999999998
Q ss_pred C
Q psy8956 300 G 300 (333)
Q Consensus 300 ~ 300 (333)
+
T Consensus 106 ~ 106 (107)
T 3ulh_A 106 T 106 (107)
T ss_dssp C
T ss_pred C
Confidence 6
No 264
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.68 E-value=2.2e-17 Score=117.42 Aligned_cols=79 Identities=15% Similarity=0.175 Sum_probs=70.9
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeee
Q psy8956 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFV 110 (333)
Q Consensus 32 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~-~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~~ 110 (333)
...++|||+|||+++|+++|+++|..||.|.. .++.+. ++.++|||||+|.+.++|.+|++ |+|..+.|+.|.|.++
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 45678999999999999999999999998877 445554 78899999999999999999998 9999999999999988
Q ss_pred cc
Q psy8956 111 EL 112 (333)
Q Consensus 111 ~~ 112 (333)
..
T Consensus 93 ~~ 94 (101)
T 1fj7_A 93 KG 94 (101)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 265
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.68 E-value=1.8e-16 Score=111.45 Aligned_cols=76 Identities=18% Similarity=0.340 Sum_probs=69.4
Q ss_pred cccceEEEeCCCC-CCCHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeee
Q psy8956 32 YKENELHVNNLEP-SVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFV 110 (333)
Q Consensus 32 ~~~~~l~V~nLp~-~~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~~ 110 (333)
.+.++|||+|||+ .+++++|+++|++||.|.++.+. +|||||+|.+.++|.+|++.|+|..+.|+.|.|.++
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 80 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVS 80 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE-------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEc
Confidence 4567899999998 99999999999999999999884 789999999999999999999999999999999998
Q ss_pred ccCC
Q psy8956 111 ELKP 114 (333)
Q Consensus 111 ~~~~ 114 (333)
....
T Consensus 81 ~~~~ 84 (96)
T 2kvi_A 81 SSNA 84 (96)
T ss_dssp ECCC
T ss_pred CcCC
Confidence 5443
No 266
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.68 E-value=8.1e-16 Score=112.00 Aligned_cols=79 Identities=15% Similarity=0.140 Sum_probs=70.8
Q ss_pred ccce--EEEecCCCCCCHHHHHHHhhccCCeeEEEeecCCcE-EEEEECCHHHHHHHHHHhCCCeeCC--eeEEEEecCC
Q psy8956 227 RKNK--IFVANLPSNINNSEFEELFARFGTITSSSLVSDKHI-GFIEFIMPKHATHAVSTMNGHVFKS--KPLKVTLSGT 301 (333)
Q Consensus 227 ~~~~--l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~~~~-~fV~f~~~~~A~~a~~~l~g~~l~g--~~l~v~~a~~ 301 (333)
++.+ |+|+||++.+++++|+++|++||.|..|.+....|+ |||+|.+.++|.+|++.|||..|.| +.|+|.+|+.
T Consensus 22 ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~ 101 (124)
T 2e5i_A 22 GNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARP 101 (124)
T ss_dssp CCSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEESSSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSC
T ss_pred CCcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecC
Confidence 4444 579999999999999999999999999998776786 9999999999999999999999987 6999999998
Q ss_pred CCCC
Q psy8956 302 KPGV 305 (333)
Q Consensus 302 ~~~~ 305 (333)
+...
T Consensus 102 ~~l~ 105 (124)
T 2e5i_A 102 TRLN 105 (124)
T ss_dssp SCCC
T ss_pred Ccce
Confidence 7543
No 267
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=4.6e-16 Score=110.57 Aligned_cols=79 Identities=19% Similarity=0.361 Sum_probs=70.6
Q ss_pred CCCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC-----CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEe
Q psy8956 224 QPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTL 298 (333)
Q Consensus 224 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~-----~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~ 298 (333)
...+.++|||+|||..+++++|+++|++||.| +++.+ +++|||+|.+.++|.+|++.|||..|+|+.|+|.+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 45577999999999999999999999999988 33333 78999999999999999999999999999999999
Q ss_pred cCCCCCC
Q psy8956 299 SGTKPGV 305 (333)
Q Consensus 299 a~~~~~~ 305 (333)
++.+...
T Consensus 88 a~~~~~~ 94 (101)
T 2fc9_A 88 QGPRGSP 94 (101)
T ss_dssp CSSCCCC
T ss_pred cCCCCCC
Confidence 9887543
No 268
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=3.5e-16 Score=108.93 Aligned_cols=78 Identities=14% Similarity=0.232 Sum_probs=72.3
Q ss_pred CCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC-----CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEec
Q psy8956 225 PARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299 (333)
Q Consensus 225 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~-----~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~a 299 (333)
....++|||+|||..+++++|+++|++| .|..+.++.+ +|+|||+|.+.++|.+|++ |||..|+|+.|.|.+|
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFRE 84 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEEC
Confidence 3466899999999999999999999999 9999999876 7799999999999999999 9999999999999999
Q ss_pred CCCCC
Q psy8956 300 GTKPG 304 (333)
Q Consensus 300 ~~~~~ 304 (333)
+.++.
T Consensus 85 ~~~~~ 89 (91)
T 2dgw_A 85 KSGPS 89 (91)
T ss_dssp SSCCC
T ss_pred CcCCC
Confidence 88753
No 269
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=8.4e-17 Score=115.13 Aligned_cols=80 Identities=26% Similarity=0.496 Sum_probs=74.4
Q ss_pred CccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC------CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEec
Q psy8956 226 ARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299 (333)
Q Consensus 226 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~------~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~a 299 (333)
...++|||+|||..+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|.+|++.|||..|+|+.|+|.+|
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 45689999999999999999999999999999999866 689999999999999999999999999999999999
Q ss_pred CCCCCC
Q psy8956 300 GTKPGV 305 (333)
Q Consensus 300 ~~~~~~ 305 (333)
+.+...
T Consensus 86 ~~~~~~ 91 (104)
T 1p1t_A 86 ASEKNK 91 (104)
T ss_dssp TCTTHH
T ss_pred CCccch
Confidence 887654
No 270
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=4.9e-17 Score=118.83 Aligned_cols=78 Identities=12% Similarity=0.179 Sum_probs=71.8
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhcCCCe----eEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEE
Q psy8956 32 YKENELHVNNLEPSVDNQALINEFKKFGTL----RDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVII 107 (333)
Q Consensus 32 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v----~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v 107 (333)
....+|||+|||+++|+++|+++|+.||.| .+|.|+.+.+|+++|||||+|.+.++|.+|++. ++..+.|+.|.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEE
Confidence 456889999999999999999999999975 689999988999999999999999999999976 999999999998
Q ss_pred eee
Q psy8956 108 TFV 110 (333)
Q Consensus 108 ~~~ 110 (333)
..+
T Consensus 100 ~~a 102 (123)
T 2dha_A 100 FRS 102 (123)
T ss_dssp EEE
T ss_pred EEC
Confidence 866
No 271
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=1.4e-16 Score=112.57 Aligned_cols=79 Identities=22% Similarity=0.265 Sum_probs=71.0
Q ss_pred CCCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC------CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEE
Q psy8956 224 QPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVT 297 (333)
Q Consensus 224 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~------~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~ 297 (333)
.....++|||+|||..+++++|+++|++||.|..+.++.+ +++|||+|.+.++|.+|++.|||..|+|+.|+|.
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 90 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLV 90 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 3445689999999999999999999999999987665543 6899999999999999999999999999999999
Q ss_pred ecCCC
Q psy8956 298 LSGTK 302 (333)
Q Consensus 298 ~a~~~ 302 (333)
+++.+
T Consensus 91 ~a~~~ 95 (98)
T 2cqp_A 91 LGSGP 95 (98)
T ss_dssp ESSCS
T ss_pred EcCCC
Confidence 99864
No 272
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=1.8e-16 Score=113.59 Aligned_cols=82 Identities=15% Similarity=0.353 Sum_probs=75.1
Q ss_pred CCCCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC------CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEE
Q psy8956 223 LQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296 (333)
Q Consensus 223 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~------~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v 296 (333)
....+.++|||+|||..+++++|+++|++||.|..|.++.+ +++|||+|.+.++|.+|++. +|..|+|+.|.|
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V 89 (105)
T 2dh8_A 11 SGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDP 89 (105)
T ss_dssp CCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEE
Confidence 34567799999999999999999999999999999999886 57999999999999999998 999999999999
Q ss_pred EecCCCCCC
Q psy8956 297 TLSGTKPGV 305 (333)
Q Consensus 297 ~~a~~~~~~ 305 (333)
.+++++...
T Consensus 90 ~~a~~~~~~ 98 (105)
T 2dh8_A 90 KPCTPRGMQ 98 (105)
T ss_dssp CCSCCSSCC
T ss_pred EEccCCCCC
Confidence 999887644
No 273
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.68 E-value=8.9e-17 Score=113.17 Aligned_cols=79 Identities=27% Similarity=0.353 Sum_probs=70.7
Q ss_pred ccccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeee
Q psy8956 31 VYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFV 110 (333)
Q Consensus 31 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~~ 110 (333)
..+.++|||+|||+.+++++|+++|+.||.|..+ ..++.++|||||+|.+.++|.+|++.|+|..+.|+.|.|.++
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 88 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 88 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 3467899999999999999999999999988654 346788999999999999999999999999999999999998
Q ss_pred ccC
Q psy8956 111 ELK 113 (333)
Q Consensus 111 ~~~ 113 (333)
..+
T Consensus 89 ~~~ 91 (96)
T 1fjc_A 89 GEK 91 (96)
T ss_dssp SSS
T ss_pred CCC
Confidence 433
No 274
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.68 E-value=2.9e-16 Score=114.41 Aligned_cols=79 Identities=19% Similarity=0.374 Sum_probs=73.5
Q ss_pred CCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC---CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEecCC
Q psy8956 225 PARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD---KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGT 301 (333)
Q Consensus 225 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~---~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~a~~ 301 (333)
..++++|||+|||..+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|.+|++.|||..++|+.|.|.++.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 84 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNA 84 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 346789999999999999999999999999999999766 78999999999999999999999999999999999986
Q ss_pred CC
Q psy8956 302 KP 303 (333)
Q Consensus 302 ~~ 303 (333)
+.
T Consensus 85 ~~ 86 (115)
T 3lqv_A 85 NR 86 (115)
T ss_dssp HH
T ss_pred Ch
Confidence 44
No 275
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.68 E-value=4.5e-16 Score=113.70 Aligned_cols=79 Identities=19% Similarity=0.326 Sum_probs=71.0
Q ss_pred ceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC-CcE-EEEEECCHHHHHHHHHHhCCCeeCC--eeEEEEecCCCCC
Q psy8956 229 NKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-KHI-GFIEFIMPKHATHAVSTMNGHVFKS--KPLKVTLSGTKPG 304 (333)
Q Consensus 229 ~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~-~~~-~fV~f~~~~~A~~a~~~l~g~~l~g--~~l~v~~a~~~~~ 304 (333)
..|+|+||++.+++++|+++|++||.|.+|.+... +++ |||+|.+.++|.+|++.|||..|.| +.|+|.||+.+.-
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~~l 108 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTSL 108 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCSSC
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCCce
Confidence 45679999999999999999999999999988765 677 9999999999999999999999988 9999999998754
Q ss_pred CCC
Q psy8956 305 VSI 307 (333)
Q Consensus 305 ~~~ 307 (333)
...
T Consensus 109 ~v~ 111 (130)
T 3zzy_A 109 NVK 111 (130)
T ss_dssp CCC
T ss_pred eEE
Confidence 433
No 276
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.68 E-value=2.4e-16 Score=112.71 Aligned_cols=80 Identities=25% Similarity=0.385 Sum_probs=72.3
Q ss_pred CCCccceEEEecCCCCC------CHHHHHHHhhccCCeeEEEeecC----CcEEEEEECCHHHHHHHHHHhCCCeeCCe-
Q psy8956 224 QPARKNKIFVANLPSNI------NNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSK- 292 (333)
Q Consensus 224 ~~~~~~~l~v~nl~~~~------~~~~l~~~f~~~g~v~~v~i~~~----~~~~fV~f~~~~~A~~a~~~l~g~~l~g~- 292 (333)
....+++|||+|||..+ ++++|+++|++||.|..+.+... +|+|||+|.+.++|.+|+..|||..|+|+
T Consensus 11 ~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 90 (105)
T 2nlw_A 11 ADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQH 90 (105)
T ss_dssp CCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTC
T ss_pred CCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCc
Confidence 34457899999999998 67999999999999999998843 78999999999999999999999999999
Q ss_pred eEEEEecCCCC
Q psy8956 293 PLKVTLSGTKP 303 (333)
Q Consensus 293 ~l~v~~a~~~~ 303 (333)
+|+|.+|....
T Consensus 91 ~l~V~~a~~~~ 101 (105)
T 2nlw_A 91 TFRVNLFTDFD 101 (105)
T ss_dssp EEEEECSCCCC
T ss_pred eEEEEEcchHh
Confidence 99999997653
No 277
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.68 E-value=1.1e-16 Score=113.99 Aligned_cols=80 Identities=15% Similarity=0.328 Sum_probs=74.4
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeec
Q psy8956 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVE 111 (333)
Q Consensus 32 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~~~ 111 (333)
...++|||+|||+.+++++|+++|+.||.|.++.+..+.++.++|||||+|.+.++|.+|++ ++..+.|+.|.|.++.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 45688999999999999999999999999999999999988999999999999999999997 8999999999999774
Q ss_pred cC
Q psy8956 112 LK 113 (333)
Q Consensus 112 ~~ 113 (333)
.+
T Consensus 85 ~~ 86 (102)
T 2xs2_A 85 RK 86 (102)
T ss_dssp EC
T ss_pred cC
Confidence 33
No 278
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=5.4e-16 Score=113.00 Aligned_cols=82 Identities=22% Similarity=0.325 Sum_probs=73.3
Q ss_pred CCccceEEEecCCCCCCHHHHHHHhhccCCe----eEEEeecC--CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEe
Q psy8956 225 PARKNKIFVANLPSNINNSEFEELFARFGTI----TSSSLVSD--KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTL 298 (333)
Q Consensus 225 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v----~~v~i~~~--~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~ 298 (333)
..++++|||+|||..+++++|+++|++||.| ..+.+... +++|||+|.+.++|.+|++.|||..|+|+.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 4567899999999999999999999999998 55555544 79999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q psy8956 299 SGTKPGVS 306 (333)
Q Consensus 299 a~~~~~~~ 306 (333)
|+.+..+.
T Consensus 102 a~~~~~~~ 109 (115)
T 2cpx_A 102 GKNKKQRS 109 (115)
T ss_dssp CCCCSCCC
T ss_pred ccCCCCCC
Confidence 99876554
No 279
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.67 E-value=2.6e-16 Score=117.33 Aligned_cols=81 Identities=14% Similarity=0.257 Sum_probs=73.9
Q ss_pred CCCccceEEEecCCCCCCHHHHHHHhhccCCeeE--EEeecC------CcEEEEEECCHHHHHHHHHHhCCC----eeCC
Q psy8956 224 QPARKNKIFVANLPSNINNSEFEELFARFGTITS--SSLVSD------KHIGFIEFIMPKHATHAVSTMNGH----VFKS 291 (333)
Q Consensus 224 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~--v~i~~~------~~~~fV~f~~~~~A~~a~~~l~g~----~l~g 291 (333)
.....++|||+|||..+++++|+++|++||.|.. |+++.+ +|||||+|.+. +|.+|+..|||. .|+|
T Consensus 19 ~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~g 97 (131)
T 2m2b_A 19 SENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDG 97 (131)
T ss_dssp CSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGG
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCC
Confidence 4456789999999999999999999999999966 898877 68999999999 999999999999 9999
Q ss_pred eeEEEEecCCCCCC
Q psy8956 292 KPLKVTLSGTKPGV 305 (333)
Q Consensus 292 ~~l~v~~a~~~~~~ 305 (333)
+.|.|.+++++...
T Consensus 98 r~l~V~~a~~~~~~ 111 (131)
T 2m2b_A 98 KTINVEFAKGSKRD 111 (131)
T ss_dssp CCCCCEECCCSCCC
T ss_pred EEEEEEECCCCCCC
Confidence 99999999886544
No 280
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=7.2e-17 Score=117.46 Aligned_cols=79 Identities=22% Similarity=0.441 Sum_probs=72.8
Q ss_pred CCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC------CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEe
Q psy8956 225 PARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTL 298 (333)
Q Consensus 225 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~------~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~ 298 (333)
....++|||+|||..+++++|+++|++||.|..|.++.+ +++|||+|.+.++|.+|+ .|||..|+|+.|.|.+
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 100 (114)
T 2cq4_A 22 ERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQA 100 (114)
T ss_dssp HHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEe
Confidence 345689999999999999999999999999999999865 689999999999999999 9999999999999999
Q ss_pred cCCCCC
Q psy8956 299 SGTKPG 304 (333)
Q Consensus 299 a~~~~~ 304 (333)
++.+..
T Consensus 101 a~~~~~ 106 (114)
T 2cq4_A 101 SQAEKN 106 (114)
T ss_dssp HHHHHH
T ss_pred cCCCcc
Confidence 987654
No 281
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.67 E-value=4e-16 Score=122.11 Aligned_cols=82 Identities=29% Similarity=0.408 Sum_probs=77.6
Q ss_pred cccccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEee
Q psy8956 30 KVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITF 109 (333)
Q Consensus 30 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~ 109 (333)
...+.++|||+|||+.+++++|+++|+.||.|..+.+..+.++.++|||||+|.+.++|.+|++.|+|..+.|+.|.|.+
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 44567899999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred ec
Q psy8956 110 VE 111 (333)
Q Consensus 110 ~~ 111 (333)
+.
T Consensus 164 a~ 165 (177)
T 2f3j_A 164 VA 165 (177)
T ss_dssp ES
T ss_pred ec
Confidence 84
No 282
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.67 E-value=1.3e-16 Score=130.25 Aligned_cols=78 Identities=22% Similarity=0.327 Sum_probs=74.1
Q ss_pred ccceEEEeCCCCCCCHHHHHHHHhcCC--CeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEee
Q psy8956 33 KENELHVNNLEPSVDNQALINEFKKFG--TLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITF 109 (333)
Q Consensus 33 ~~~~l~V~nLp~~~t~~~l~~~f~~~g--~v~~v~i~~~~-~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~ 109 (333)
..++|||+|||+.+|+++|+++|+.|| .|.+|+|++++ ++.++|||||+|.+.++|.+||+.|++..|.|+.|.|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 677899999999999999999999999 99999999997 999999999999999999999999999999999999998
Q ss_pred e
Q psy8956 110 V 110 (333)
Q Consensus 110 ~ 110 (333)
+
T Consensus 147 a 147 (229)
T 3q2s_C 147 V 147 (229)
T ss_dssp C
T ss_pred C
Confidence 7
No 283
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.67 E-value=4.8e-17 Score=113.09 Aligned_cols=77 Identities=26% Similarity=0.520 Sum_probs=67.3
Q ss_pred ceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC------CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEecCCC
Q psy8956 229 NKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302 (333)
Q Consensus 229 ~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~------~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~a~~~ 302 (333)
++|||+|||..+++++|+++|++||.|..+.+..+ +|+|||+|.+.+ |.+|++.|||..++|+.|+|.+|..+
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 58999999999999999999999999999999865 779999999999 99999999999999999999999886
Q ss_pred CCCC
Q psy8956 303 PGVS 306 (333)
Q Consensus 303 ~~~~ 306 (333)
....
T Consensus 81 ~~~~ 84 (90)
T 2ki2_A 81 KSLE 84 (90)
T ss_dssp ----
T ss_pred CCCC
Confidence 5443
No 284
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.6e-16 Score=113.40 Aligned_cols=79 Identities=23% Similarity=0.389 Sum_probs=69.3
Q ss_pred ccccceEEE--eCCCCCCCHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCcc-----CCe
Q psy8956 31 VYKENELHV--NNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLI-----GSK 103 (333)
Q Consensus 31 ~~~~~~l~V--~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~-----~g~ 103 (333)
..+.++||| +|||+.+++++|+++|++||.|.++.+.. ++|||||+|.+.++|.+|++.|||..+ .|+
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~-----~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~ 96 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 96 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT-----TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCc
Confidence 455678999 77999999999999999999999987764 379999999999999999999999987 678
Q ss_pred eeEEeeeccCC
Q psy8956 104 PVIITFVELKP 114 (333)
Q Consensus 104 ~i~v~~~~~~~ 114 (333)
.+.|.|+..-+
T Consensus 97 ~l~v~~a~~~p 107 (114)
T 2cq2_A 97 TLYLNFVEKVQ 107 (114)
T ss_dssp ECEEEEESCCC
T ss_pred EEEEEecccCc
Confidence 99999984333
No 285
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.67 E-value=4.1e-16 Score=107.58 Aligned_cols=75 Identities=17% Similarity=0.412 Sum_probs=68.8
Q ss_pred CCCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC------CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEE
Q psy8956 224 QPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVT 297 (333)
Q Consensus 224 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~------~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~ 297 (333)
...+.++|||+|||..+++++|+++|++||.|..+.++.+ +|+|||+|.+.++|.+|++ +++..|+|+.|.|.
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPK 85 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEE
Confidence 4456789999999999999999999999999999999866 6799999999999999996 58889999999999
Q ss_pred ec
Q psy8956 298 LS 299 (333)
Q Consensus 298 ~a 299 (333)
+|
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 86
No 286
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=7.3e-16 Score=108.46 Aligned_cols=79 Identities=19% Similarity=0.366 Sum_probs=71.9
Q ss_pred CCccceEEEecCCCCCCHHHHHHHhhccCCeeEEE-eecC--CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEecCC
Q psy8956 225 PARKNKIFVANLPSNINNSEFEELFARFGTITSSS-LVSD--KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGT 301 (333)
Q Consensus 225 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~-i~~~--~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~a~~ 301 (333)
....++|||+|||..+++++|+++|++||.|..++ ++.+ .+.|||+|.+.++|.+|++.|||..|+|++|.|.+|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 91 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPD 91 (96)
T ss_dssp CCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCC
T ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCc
Confidence 34568999999999999999999999999999994 7766 44599999999999999999999999999999999998
Q ss_pred CC
Q psy8956 302 KP 303 (333)
Q Consensus 302 ~~ 303 (333)
+.
T Consensus 92 ~~ 93 (96)
T 2e44_A 92 EM 93 (96)
T ss_dssp CC
T ss_pred cc
Confidence 73
No 287
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.67 E-value=4.4e-16 Score=112.03 Aligned_cols=82 Identities=17% Similarity=0.354 Sum_probs=70.7
Q ss_pred CCCCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC------CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEE
Q psy8956 223 LQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296 (333)
Q Consensus 223 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~------~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v 296 (333)
....+.++|||+|||..+++++|+++|++||.|..|.+..+ +|+|||+|.+.++|.+|++.+ |..|+|+.|.|
T Consensus 20 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V 98 (109)
T 2rs2_A 20 HMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDP 98 (109)
T ss_dssp ------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEE
Confidence 34456789999999999999999999999999999999876 689999999999999999976 59999999999
Q ss_pred EecCCCCCC
Q psy8956 297 TLSGTKPGV 305 (333)
Q Consensus 297 ~~a~~~~~~ 305 (333)
.++..+...
T Consensus 99 ~~a~~~~~~ 107 (109)
T 2rs2_A 99 KVAFPRRAQ 107 (109)
T ss_dssp EECCCCCCC
T ss_pred EEccCCCCC
Confidence 999887543
No 288
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.67 E-value=1.2e-16 Score=112.34 Aligned_cols=77 Identities=21% Similarity=0.262 Sum_probs=68.1
Q ss_pred CCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC------CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEe
Q psy8956 225 PARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTL 298 (333)
Q Consensus 225 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~------~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~ 298 (333)
.++.++|||+|||..+++++|+++|++||.|..+.++.+ +++|||+|.+.++|.+|++.|||..|+|++|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~ 91 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSG 91 (95)
T ss_dssp ---CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEe
Confidence 345689999999999999999999999999987766653 68999999999999999999999999999999999
Q ss_pred cCC
Q psy8956 299 SGT 301 (333)
Q Consensus 299 a~~ 301 (333)
++.
T Consensus 92 a~s 94 (95)
T 2ek1_A 92 PSS 94 (95)
T ss_dssp CC-
T ss_pred ccC
Confidence 864
No 289
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.66 E-value=1.3e-16 Score=116.71 Aligned_cols=79 Identities=13% Similarity=0.188 Sum_probs=72.1
Q ss_pred cccccceEEEeCCCCCCCHHHHHHHHhcCCCee--EEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEE
Q psy8956 30 KVYKENELHVNNLEPSVDNQALINEFKKFGTLR--DVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVII 107 (333)
Q Consensus 30 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~--~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v 107 (333)
.+...++|||+|||+++|+++|+++|+.| .|. +|.|+.++.|.++|||||+|.+.++|.+|++. ++..+.|+.|.|
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V 115 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKERIGHRYIEV 115 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEE
Confidence 34567889999999999999999999999 577 89999998899999999999999999999974 788899999999
Q ss_pred eee
Q psy8956 108 TFV 110 (333)
Q Consensus 108 ~~~ 110 (333)
..+
T Consensus 116 ~~a 118 (126)
T 2hgm_A 116 FKS 118 (126)
T ss_dssp EEE
T ss_pred EEC
Confidence 877
No 290
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.66 E-value=6.6e-16 Score=118.93 Aligned_cols=83 Identities=18% Similarity=0.262 Sum_probs=75.8
Q ss_pred CCCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC------CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEE
Q psy8956 224 QPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVT 297 (333)
Q Consensus 224 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~------~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~ 297 (333)
...+.++|||+|||..+++++|+++|++||.|..|.++.+ +++|||+|.+.++|.+|++.|||..|+|+.|+|.
T Consensus 35 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 114 (156)
T 1h2v_Z 35 LLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTD 114 (156)
T ss_dssp TTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3346789999999999999999999999999999999876 5799999999999999999999999999999999
Q ss_pred ecCCCCCCC
Q psy8956 298 LSGTKPGVS 306 (333)
Q Consensus 298 ~a~~~~~~~ 306 (333)
+|+......
T Consensus 115 ~a~~~~~~~ 123 (156)
T 1h2v_Z 115 WDAGFKEGR 123 (156)
T ss_dssp EESCCCTTC
T ss_pred ECCCCCCcC
Confidence 998866544
No 291
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=3.6e-16 Score=109.32 Aligned_cols=76 Identities=21% Similarity=0.245 Sum_probs=67.6
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhcCCC-eeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcC-CccCCeeeEEee
Q psy8956 32 YKENELHVNNLEPSVDNQALINEFKKFGT-LRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNG-HLIGSKPVIITF 109 (333)
Q Consensus 32 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~-v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~-~~~~g~~i~v~~ 109 (333)
...++|||+|||+++|+++|+++|++||. |..+.+. ++|||||+|.+.++|.+|++.|+| ..+.|+.|.|.+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 79 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDY 79 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEE
Confidence 34578999999999999999999999998 6655553 489999999999999999999999 899999999999
Q ss_pred eccC
Q psy8956 110 VELK 113 (333)
Q Consensus 110 ~~~~ 113 (333)
+..+
T Consensus 80 a~~~ 83 (93)
T 2cqh_A 80 SVSK 83 (93)
T ss_dssp CCCC
T ss_pred ccCc
Confidence 8543
No 292
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.66 E-value=1.3e-16 Score=113.04 Aligned_cols=79 Identities=20% Similarity=0.406 Sum_probs=69.2
Q ss_pred CCCCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC-------CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEE
Q psy8956 223 LQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLK 295 (333)
Q Consensus 223 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~-------~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~ 295 (333)
......++|||+|||..+++++|+++|++|| |..+++..+ +|+|||+|.+.++|.+|+ .|||..|+|+.|+
T Consensus 14 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~ 91 (100)
T 2j76_E 14 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIR 91 (100)
T ss_dssp ------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEE
Confidence 3455679999999999999999999999999 999999865 679999999999999999 8999999999999
Q ss_pred EEecCCCC
Q psy8956 296 VTLSGTKP 303 (333)
Q Consensus 296 v~~a~~~~ 303 (333)
|.+++.+.
T Consensus 92 V~~a~~~~ 99 (100)
T 2j76_E 92 VDVADQAQ 99 (100)
T ss_dssp CEECCCSC
T ss_pred EEeccCCC
Confidence 99998764
No 293
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.5e-15 Score=108.36 Aligned_cols=80 Identities=20% Similarity=0.395 Sum_probs=72.6
Q ss_pred CCCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC------CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEE
Q psy8956 224 QPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVT 297 (333)
Q Consensus 224 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~------~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~ 297 (333)
...+.++|||+|||..+++++|+++|++||.|..+.++.+ +++|||+|.+.++|.+|++ +++.|+|+.|.|.
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~ 88 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCK 88 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEE
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEE
Confidence 4456789999999999999999999999999999999876 5799999999999999999 4789999999999
Q ss_pred ecCCCCCC
Q psy8956 298 LSGTKPGV 305 (333)
Q Consensus 298 ~a~~~~~~ 305 (333)
++..+...
T Consensus 89 ~a~~~~~~ 96 (103)
T 2cqg_A 89 LPNSKQSQ 96 (103)
T ss_dssp CCCTTCCC
T ss_pred ecCCCCcC
Confidence 99987654
No 294
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.66 E-value=4.2e-17 Score=121.75 Aligned_cols=79 Identities=15% Similarity=0.138 Sum_probs=72.4
Q ss_pred ccccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeee
Q psy8956 31 VYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFV 110 (333)
Q Consensus 31 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~~ 110 (333)
....++|||+|||+++|+++|+++|++|| |.+|.|+.+..+.++|||||+|.+.++|.+|+ .+++..+.|+.|.|..+
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a 120 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLN 120 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEEC
Confidence 35567899999999999999999999999 66999999998999999999999999999999 78999999999999877
Q ss_pred c
Q psy8956 111 E 111 (333)
Q Consensus 111 ~ 111 (333)
.
T Consensus 121 ~ 121 (139)
T 2hgn_A 121 S 121 (139)
T ss_dssp C
T ss_pred C
Confidence 4
No 295
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.66 E-value=6.8e-16 Score=112.75 Aligned_cols=78 Identities=26% Similarity=0.371 Sum_probs=69.9
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCCCCCcccE-EEEEeCCHHHHHHHHHHhcCCccCC--eeeEEe
Q psy8956 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGF-AIIVFNTPAEAKKARVEMNGHLIGS--KPVIIT 108 (333)
Q Consensus 32 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~-a~v~f~~~e~A~~al~~l~~~~~~g--~~i~v~ 108 (333)
.+-.+|||+||++.+|+++|+++|++||.|.+|.+... ++|+ |||+|.+.++|.+|++.|+|..+.| +.|+|+
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~ 101 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 101 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEE
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEE
Confidence 44566889999999999999999999999999988864 3677 9999999999999999999999988 899999
Q ss_pred eeccC
Q psy8956 109 FVELK 113 (333)
Q Consensus 109 ~~~~~ 113 (333)
|+...
T Consensus 102 ~ak~~ 106 (130)
T 3zzy_A 102 FSKLT 106 (130)
T ss_dssp ECSCS
T ss_pred ecCCC
Confidence 99544
No 296
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=8.3e-17 Score=110.58 Aligned_cols=75 Identities=20% Similarity=0.396 Sum_probs=69.9
Q ss_pred CccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC------CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEec
Q psy8956 226 ARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299 (333)
Q Consensus 226 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~------~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~a 299 (333)
.++++|||+|||..+++++|+++|++||.|..+.+..+ +++|||+|.+.++|.+|++.|||..++|+.|+++++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 46689999999999999999999999999999998876 789999999999999999999999999999988775
Q ss_pred C
Q psy8956 300 G 300 (333)
Q Consensus 300 ~ 300 (333)
+
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 297
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=6.1e-16 Score=112.88 Aligned_cols=81 Identities=14% Similarity=0.338 Sum_probs=74.2
Q ss_pred CCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC------CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEe
Q psy8956 225 PARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTL 298 (333)
Q Consensus 225 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~------~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~ 298 (333)
....++|||+|||..+++++|+++|++||.|..|.++.+ +++|||+|.+.++|.+|++. +|..|+|+.|.|.+
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~ 102 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKR 102 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEEC
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEE
Confidence 335689999999999999999999999999999999876 67999999999999999997 99999999999999
Q ss_pred cCCCCCCC
Q psy8956 299 SGTKPGVS 306 (333)
Q Consensus 299 a~~~~~~~ 306 (333)
+..+....
T Consensus 103 a~~~~~~~ 110 (116)
T 1x4b_A 103 AVAREESG 110 (116)
T ss_dssp CSSCCCCC
T ss_pred CCCCccCC
Confidence 99876543
No 298
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=8.9e-16 Score=107.49 Aligned_cols=75 Identities=20% Similarity=0.277 Sum_probs=66.0
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeec
Q psy8956 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVE 111 (333)
Q Consensus 32 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~~~ 111 (333)
...++|||+|||+.+|+++|+++|..||.|.+| +....++. ||||+|.+.++|.+|++ |+|..+.|+.|.|.++.
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v-~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~ 80 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV-VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPRE 80 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE-EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE-EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECC
Confidence 345789999999999999999999999999987 33333543 99999999999999999 99999999999999774
No 299
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=1.1e-15 Score=107.10 Aligned_cols=79 Identities=20% Similarity=0.326 Sum_probs=68.9
Q ss_pred CccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecCCc-EEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEecCCCCC
Q psy8956 226 ARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKH-IGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKPG 304 (333)
Q Consensus 226 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~~~-~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~a~~~~~ 304 (333)
...++|||+|||..+++++|+++|++||.|..|.+....+ +|||+|.+.++|.+|++ |||..|+|+.|.|.++..+..
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~~~ 84 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQKEF 84 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCSCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcCCC
Confidence 3457999999999999999999999999999883333222 99999999999999999 999999999999999877654
Q ss_pred C
Q psy8956 305 V 305 (333)
Q Consensus 305 ~ 305 (333)
.
T Consensus 85 ~ 85 (94)
T 2e5g_A 85 Q 85 (94)
T ss_dssp C
T ss_pred C
Confidence 3
No 300
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.66 E-value=9.3e-16 Score=116.34 Aligned_cols=77 Identities=19% Similarity=0.335 Sum_probs=70.3
Q ss_pred cceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC--CcEEEEEECCHHHHHHHHHHhCCCeeCC--eeEEEEecCCCC
Q psy8956 228 KNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD--KHIGFIEFIMPKHATHAVSTMNGHVFKS--KPLKVTLSGTKP 303 (333)
Q Consensus 228 ~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~--~~~~fV~f~~~~~A~~a~~~l~g~~l~g--~~l~v~~a~~~~ 303 (333)
..+|||+||++.+++++|+++|++||.|.+|.+..+ +++|||+|.+.++|.+|++.|||..|.| +.|+|.||+.+.
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~~ 125 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTS 125 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSSS
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCCc
Confidence 456889999999999999999999999999998755 5799999999999999999999999965 999999999874
Q ss_pred C
Q psy8956 304 G 304 (333)
Q Consensus 304 ~ 304 (333)
.
T Consensus 126 l 126 (164)
T 1sjr_A 126 L 126 (164)
T ss_dssp C
T ss_pred c
Confidence 3
No 301
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.66 E-value=4.7e-16 Score=119.02 Aligned_cols=76 Identities=9% Similarity=0.235 Sum_probs=70.3
Q ss_pred ccceEEEecCCCCCCHHHHHHHhhccC--CeeEEEeecC------CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEe
Q psy8956 227 RKNKIFVANLPSNINNSEFEELFARFG--TITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTL 298 (333)
Q Consensus 227 ~~~~l~v~nl~~~~~~~~l~~~f~~~g--~v~~v~i~~~------~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~ 298 (333)
..++|||+|||..+++++|+++|++|| .|..++++.+ +|||||+|.+.++|.+|++.|||..|+|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 458999999999999999999999999 9999999866 77999999999999999999999999999999999
Q ss_pred cCCC
Q psy8956 299 SGTK 302 (333)
Q Consensus 299 a~~~ 302 (333)
|..+
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 9753
No 302
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.66 E-value=2.3e-16 Score=105.61 Aligned_cols=69 Identities=23% Similarity=0.434 Sum_probs=65.3
Q ss_pred eEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC------CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEec
Q psy8956 230 KIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299 (333)
Q Consensus 230 ~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~------~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~a 299 (333)
+|||+|||..+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|.+|++ |||..++|++|.|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 4899999999999999999999999999998876 6799999999999999998 9999999999999986
No 303
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.5e-15 Score=108.38 Aligned_cols=80 Identities=15% Similarity=0.231 Sum_probs=71.8
Q ss_pred CCCccceEEEecCCCCCCHHHHHHHhhccCCeeE-EEeecC-----CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEE
Q psy8956 224 QPARKNKIFVANLPSNINNSEFEELFARFGTITS-SSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVT 297 (333)
Q Consensus 224 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~-v~i~~~-----~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~ 297 (333)
.....++|||+|||+.+++++|+++|++||.|.. +.++.+ +|+|||+|.+.++|.+|++. ++..|+|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~ 89 (104)
T 1wg5_A 11 DTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIF 89 (104)
T ss_dssp SCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEE
Confidence 3346689999999999999999999999999987 777655 78999999999999999997 9999999999999
Q ss_pred ecCCCCC
Q psy8956 298 LSGTKPG 304 (333)
Q Consensus 298 ~a~~~~~ 304 (333)
++..++.
T Consensus 90 ~~~~~~~ 96 (104)
T 1wg5_A 90 KSSRAEV 96 (104)
T ss_dssp EECTTTS
T ss_pred ECCHHHH
Confidence 9987653
No 304
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.65 E-value=1.1e-15 Score=115.61 Aligned_cols=78 Identities=23% Similarity=0.437 Sum_probs=71.7
Q ss_pred CCCCCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC------CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEE
Q psy8956 222 LLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLK 295 (333)
Q Consensus 222 ~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~------~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~ 295 (333)
.....+.++|||+|||..+++++|+++|++||.|..+++..+ +++|||+|.+.++|.+|++.|||..|+|+.|+
T Consensus 57 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 136 (140)
T 2ku7_A 57 GGSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIR 136 (140)
T ss_dssp CSSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEE
T ss_pred CCCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 344557899999999999999999999999999999999765 78999999999999999999999999999999
Q ss_pred EEec
Q psy8956 296 VTLS 299 (333)
Q Consensus 296 v~~a 299 (333)
|.+|
T Consensus 137 v~~A 140 (140)
T 2ku7_A 137 VNLA 140 (140)
T ss_dssp EEC-
T ss_pred EEeC
Confidence 9986
No 305
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=1.2e-15 Score=108.54 Aligned_cols=81 Identities=19% Similarity=0.289 Sum_probs=70.5
Q ss_pred CCCCCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC------CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEE
Q psy8956 222 LLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLK 295 (333)
Q Consensus 222 ~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~------~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~ 295 (333)
.....+.++|||+|||..+++++|+++|++|+. +.++.+ +++|||+|.+.++|.+|++.|||..|+|+.|+
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~---~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 85 (102)
T 2fc8_A 9 NARSQPSKTLFVKGLSEDTTEETLKESFDGSVR---ARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVT 85 (102)
T ss_dssp SSSSCCCSSEEEECCCTTCCHHHHHHTSTTCSE---EEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCccCHHHHHHHhcCCeE---EEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 345567899999999999999999999998854 444443 58999999999999999999999999999999
Q ss_pred EEecCCCCCC
Q psy8956 296 VTLSGTKPGV 305 (333)
Q Consensus 296 v~~a~~~~~~ 305 (333)
|.+|+++...
T Consensus 86 V~~a~~~~~~ 95 (102)
T 2fc8_A 86 LDWAKPKGEG 95 (102)
T ss_dssp EEECCCCCSS
T ss_pred EEEecCCCCC
Confidence 9999987654
No 306
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.8e-15 Score=106.54 Aligned_cols=77 Identities=23% Similarity=0.362 Sum_probs=69.2
Q ss_pred ccccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeee
Q psy8956 31 VYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFV 110 (333)
Q Consensus 31 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~~ 110 (333)
..+.++|||+|| .+|+++|+++|++||.|.++.+. .++|||||+|.+.++|.+|+..|++..+.|+.|.|.++
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 84 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 84 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE-----TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec-----CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 345688999996 89999999999999999999885 36899999999999999999999999999999999998
Q ss_pred ccCC
Q psy8956 111 ELKP 114 (333)
Q Consensus 111 ~~~~ 114 (333)
..++
T Consensus 85 ~~~~ 88 (97)
T 1x5p_A 85 RKQP 88 (97)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 5443
No 307
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.65 E-value=2.7e-16 Score=111.75 Aligned_cols=81 Identities=16% Similarity=0.308 Sum_probs=70.7
Q ss_pred CCCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC------CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEE
Q psy8956 224 QPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVT 297 (333)
Q Consensus 224 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~------~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~ 297 (333)
...+.++|||+|||..+++++|+++|++||.|.. .++.+ +|+|||+|.+.++|.+|++ |||..|+|+.|+|.
T Consensus 13 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~ 90 (101)
T 1fj7_A 13 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 90 (101)
T ss_dssp TCSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEE
Confidence 3446789999999999999999999999998766 33332 8899999999999999999 99999999999999
Q ss_pred ecCCCCCCC
Q psy8956 298 LSGTKPGVS 306 (333)
Q Consensus 298 ~a~~~~~~~ 306 (333)
+|+.+....
T Consensus 91 ~a~~~~~~~ 99 (101)
T 1fj7_A 91 KPKGRDGTR 99 (101)
T ss_dssp CCSCCCCSS
T ss_pred EcCCCCCCC
Confidence 999876543
No 308
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.46 E-value=9.3e-18 Score=122.55 Aligned_cols=83 Identities=20% Similarity=0.426 Sum_probs=76.5
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhcCCCeeE--------EEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCC
Q psy8956 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRD--------VRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGS 102 (333)
Q Consensus 32 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~--------v~i~~~~-~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g 102 (333)
.+.++|||+|||..+++++|+++|++||.|.. +.+..++ ++.++|||||+|.+.++|.+|++.|++..+.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 45678999999999999999999999999998 8899886 78899999999999999999999999999999
Q ss_pred eeeEEeeeccCC
Q psy8956 103 KPVIITFVELKP 114 (333)
Q Consensus 103 ~~i~v~~~~~~~ 114 (333)
+.|.|.++..++
T Consensus 85 ~~l~V~~a~~~~ 96 (116)
T 2lcw_A 85 NPIKVSFATRRA 96 (116)
Confidence 999999985443
No 309
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.65 E-value=1e-15 Score=107.74 Aligned_cols=81 Identities=22% Similarity=0.333 Sum_probs=71.8
Q ss_pred CCCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC--CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEecCC
Q psy8956 224 QPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD--KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGT 301 (333)
Q Consensus 224 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~--~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~a~~ 301 (333)
...+.++|||+|||..+++++|+++|++||.|..+ -... +|+|||+|.+.++|.+|++.|||..|+|+.|.|.++++
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 90 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGE 90 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSS
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCC
Confidence 44567999999999999999999999999998877 2222 78999999999999999999999999999999999988
Q ss_pred CCCC
Q psy8956 302 KPGV 305 (333)
Q Consensus 302 ~~~~ 305 (333)
+...
T Consensus 91 ~~~~ 94 (96)
T 1fjc_A 91 KGGT 94 (96)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 6543
No 310
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.65 E-value=4.6e-16 Score=107.48 Aligned_cols=73 Identities=16% Similarity=0.214 Sum_probs=68.1
Q ss_pred ccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeec
Q psy8956 33 KENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVE 111 (333)
Q Consensus 33 ~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~~~ 111 (333)
..++|||+|||+.+++++|+++|++| .|.++.+. .++|||||+|.+.++|.+|++.|+|..+.|+.|.|.++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD-----RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE-----GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe-----CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 45789999999999999999999999 99999885 479999999999999999999999999999999999884
No 311
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.65 E-value=1.9e-16 Score=107.67 Aligned_cols=70 Identities=27% Similarity=0.471 Sum_probs=64.3
Q ss_pred cceEEEecCCCCC------CHHHHHHHhhccCCeeEEEeecC----CcEEEEEECCHHHHHHHHHHhCCCeeCCe-eEEE
Q psy8956 228 KNKIFVANLPSNI------NNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSK-PLKV 296 (333)
Q Consensus 228 ~~~l~v~nl~~~~------~~~~l~~~f~~~g~v~~v~i~~~----~~~~fV~f~~~~~A~~a~~~l~g~~l~g~-~l~v 296 (333)
+++|||+|||..+ ++++|+++|++||.|..+.+... +|+|||+|.+.++|.+|++.|||..|+|+ +|+|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 3689999999999 67999999999999999998843 78999999999999999999999999999 8876
Q ss_pred E
Q psy8956 297 T 297 (333)
Q Consensus 297 ~ 297 (333)
+
T Consensus 81 ~ 81 (81)
T 2krb_A 81 N 81 (81)
T ss_dssp C
T ss_pred C
Confidence 3
No 312
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.6e-15 Score=110.31 Aligned_cols=79 Identities=23% Similarity=0.562 Sum_probs=72.4
Q ss_pred CCCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC-----CcEEEEEECCHHHHHHHHHHhCCCee--------C
Q psy8956 224 QPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVF--------K 290 (333)
Q Consensus 224 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~-----~~~~fV~f~~~~~A~~a~~~l~g~~l--------~ 290 (333)
.....++|||+|||..+++++|+++|++||.|..+.+..+ +++|||+|.+.++|.+|++.|||..| .
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 3456789999999999999999999999999999999876 68999999999999999999999999 5
Q ss_pred CeeEEEEecCCC
Q psy8956 291 SKPLKVTLSGTK 302 (333)
Q Consensus 291 g~~l~v~~a~~~ 302 (333)
|++|.|.||.++
T Consensus 101 ~~~l~v~~a~p~ 112 (114)
T 1x5o_A 101 TEPLLCKFSGPS 112 (114)
T ss_dssp SSCBEEEECCCS
T ss_pred CCceeEEccCCC
Confidence 788999999854
No 313
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.65 E-value=8.8e-16 Score=116.46 Aligned_cols=80 Identities=24% Similarity=0.306 Sum_probs=71.4
Q ss_pred ccccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCC--eeeEEe
Q psy8956 31 VYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGS--KPVIIT 108 (333)
Q Consensus 31 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g--~~i~v~ 108 (333)
+.+..+|||+|||+.+|+++|+++|++||.|.+|.+..+. ++|||||+|.+.++|.+|++.|+|..|.| +.|.|.
T Consensus 43 ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~---~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~ 119 (164)
T 1sjr_A 43 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN---NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 119 (164)
T ss_dssp CCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS---SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEE
T ss_pred CCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC---CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEE
Confidence 3455779999999999999999999999999999987543 57899999999999999999999999965 999999
Q ss_pred eeccC
Q psy8956 109 FVELK 113 (333)
Q Consensus 109 ~~~~~ 113 (333)
|+..+
T Consensus 120 ~Ak~~ 124 (164)
T 1sjr_A 120 FSKLT 124 (164)
T ss_dssp ECSSS
T ss_pred EecCC
Confidence 99544
No 314
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.65 E-value=9.4e-16 Score=112.23 Aligned_cols=81 Identities=23% Similarity=0.436 Sum_probs=73.2
Q ss_pred CCCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecCCcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEecCCCC
Q psy8956 224 QPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKP 303 (333)
Q Consensus 224 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~a~~~~ 303 (333)
...+.++|||+|+ .+++++|+++|++||.|..|.+...+++|||+|.+.++|.+|++.|||..|+|+.|+|.+++.+.
T Consensus 35 ~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~ 112 (121)
T 2bz2_A 35 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQP 112 (121)
T ss_dssp CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEETTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSSC
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCCC
Confidence 3456789999996 69999999999999999999999889999999999999999999999999999999999999875
Q ss_pred CCC
Q psy8956 304 GVS 306 (333)
Q Consensus 304 ~~~ 306 (333)
...
T Consensus 113 ~~~ 115 (121)
T 2bz2_A 113 MLD 115 (121)
T ss_dssp C--
T ss_pred CCC
Confidence 443
No 315
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.65 E-value=3.8e-15 Score=108.43 Aligned_cols=77 Identities=19% Similarity=0.257 Sum_probs=67.7
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCCCCCcccE-EEEEeCCHHHHHHHHHHhcCCccCC--eeeEEe
Q psy8956 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGF-AIIVFNTPAEAKKARVEMNGHLIGS--KPVIIT 108 (333)
Q Consensus 32 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~-a~v~f~~~e~A~~al~~l~~~~~~g--~~i~v~ 108 (333)
.....|||+|||+.+|+++|+++|++||.|.+|.+... .|| |||+|.+.++|..|++.|+|..|.| +.|.|.
T Consensus 23 s~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~ 97 (124)
T 2e5i_A 23 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIE 97 (124)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEE
T ss_pred CcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEE
Confidence 44455789999999999999999999999999998763 386 9999999999999999999999987 689999
Q ss_pred eeccC
Q psy8956 109 FVELK 113 (333)
Q Consensus 109 ~~~~~ 113 (333)
++..+
T Consensus 98 ~Ak~~ 102 (124)
T 2e5i_A 98 YARPT 102 (124)
T ss_dssp CCSCS
T ss_pred EecCC
Confidence 88544
No 316
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=8.5e-16 Score=108.11 Aligned_cols=78 Identities=13% Similarity=0.332 Sum_probs=69.4
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhcCCCeeEE-EEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeee
Q psy8956 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDV-RVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFV 110 (333)
Q Consensus 32 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v-~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~~ 110 (333)
...++|||+|||+.+++++|+++|..||.|.++ .++.++. .|.|||+|.+.++|.+|+..|+|..+.|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~---~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 89 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSE---TAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYI 89 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSS---SEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCC---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 345789999999999999999999999999999 4777652 234999999999999999999999999999999998
Q ss_pred cc
Q psy8956 111 EL 112 (333)
Q Consensus 111 ~~ 112 (333)
..
T Consensus 90 ~~ 91 (96)
T 2e44_A 90 PD 91 (96)
T ss_dssp CC
T ss_pred Cc
Confidence 43
No 317
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.64 E-value=3.2e-16 Score=124.57 Aligned_cols=79 Identities=15% Similarity=0.237 Sum_probs=72.9
Q ss_pred ccccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeee
Q psy8956 31 VYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFV 110 (333)
Q Consensus 31 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~~ 110 (333)
....++|||+|||+.+|+++|+++|++||.|.+|++.++.++.++|||||+|.+.++|.+|++.+ +..+.|+.|.|.+.
T Consensus 106 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~ 184 (193)
T 2voo_A 106 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFK 184 (193)
T ss_dssp HHHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEET
T ss_pred ccccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEh
Confidence 34678999999999999999999999999999999999988999999999999999999999754 56899999999976
No 318
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.64 E-value=9.3e-16 Score=113.34 Aligned_cols=76 Identities=26% Similarity=0.456 Sum_probs=71.0
Q ss_pred ccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC------CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEecC
Q psy8956 227 RKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSG 300 (333)
Q Consensus 227 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~------~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~a~ 300 (333)
..++|||+|||..+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|.+|+ .|||..|+|+.|+|.+++
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 4689999999999999999999999999999999865 789999999999999999 799999999999999998
Q ss_pred CCC
Q psy8956 301 TKP 303 (333)
Q Consensus 301 ~~~ 303 (333)
...
T Consensus 114 ~~~ 116 (124)
T 2jwn_A 114 TNM 116 (124)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 319
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=4e-16 Score=104.99 Aligned_cols=70 Identities=20% Similarity=0.463 Sum_probs=66.3
Q ss_pred ceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC------CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEec
Q psy8956 229 NKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299 (333)
Q Consensus 229 ~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~------~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~a 299 (333)
++|||+|||..+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|.+|++.++ ..++|++|.|.+|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 47999999999999999999999999999999876 6799999999999999999999 9999999999987
No 320
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=6.2e-16 Score=112.33 Aligned_cols=80 Identities=10% Similarity=0.116 Sum_probs=73.0
Q ss_pred CCCccceEEEecCCCCCCHHHHHHHhhccCCe-eEEEeecC-----CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEE
Q psy8956 224 QPARKNKIFVANLPSNINNSEFEELFARFGTI-TSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVT 297 (333)
Q Consensus 224 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v-~~v~i~~~-----~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~ 297 (333)
...+.++|||+|||..+++++|+++|++||.| ..|.++.+ +|+|||+|.+.++|.+|++. ||..|+|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVH 89 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEE
Confidence 44567899999999999999999999999999 88998865 88999999999999999997 9999999999999
Q ss_pred ecCCCCC
Q psy8956 298 LSGTKPG 304 (333)
Q Consensus 298 ~a~~~~~ 304 (333)
++..+..
T Consensus 90 ~a~~~~~ 96 (114)
T 2cpy_A 90 VVTLEDM 96 (114)
T ss_dssp EECHHHH
T ss_pred ECCHHHH
Confidence 9987653
No 321
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.64 E-value=4.7e-16 Score=111.23 Aligned_cols=76 Identities=17% Similarity=0.209 Sum_probs=69.2
Q ss_pred ceEEEeCC----CCCCCHHHHHHHHhcCCCeeEEEEeeCC-CCCcccEEEEEeCC----HHH----HHHHHH--HhcCCc
Q psy8956 35 NELHVNNL----EPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNT----PAE----AKKARV--EMNGHL 99 (333)
Q Consensus 35 ~~l~V~nL----p~~~t~~~l~~~f~~~g~v~~v~i~~~~-~~~~~g~a~v~f~~----~e~----A~~al~--~l~~~~ 99 (333)
..|+|+|| |+.+++.+|+++|++||+|.++.++.|+ +|.++|||||+|.+ +++ |.+|+. .|+|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 56999999 9999999999999999999999999999 99999999999996 433 888988 689999
Q ss_pred cCCeeeEEeee
Q psy8956 100 IGSKPVIITFV 110 (333)
Q Consensus 100 ~~g~~i~v~~~ 110 (333)
+.|+.|.|.+-
T Consensus 83 I~Gr~irV~ln 93 (136)
T 2j8a_A 83 IMGFKFEVILN 93 (136)
T ss_dssp ETTEEEEEEEC
T ss_pred ecCcEEEEEEC
Confidence 99999999965
No 322
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.64 E-value=1.3e-15 Score=105.08 Aligned_cols=72 Identities=24% Similarity=0.532 Sum_probs=68.4
Q ss_pred CccceEEEecCCCCCCHHHHHHHhhcc----C-------CeeEEEeecCCcEEEEEECCHHHHHHHHHHhCCCeeCCeeE
Q psy8956 226 ARKNKIFVANLPSNINNSEFEELFARF----G-------TITSSSLVSDKHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294 (333)
Q Consensus 226 ~~~~~l~v~nl~~~~~~~~l~~~f~~~----g-------~v~~v~i~~~~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l 294 (333)
.+.++|||+|||..+++++|+++|++| | .|..+.+..++++|||+|.+.++|.+|+ .|||..++|+.|
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~kg~afV~f~~~~~a~~A~-~l~g~~~~g~~l 82 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSL 82 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSSSEEEEEESSHHHHHHHG-GGTTCEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCCcEEEEEcCCHHHHHHHH-hcCCCEECCeEE
Confidence 456899999999999999999999999 8 8999999999999999999999999999 999999999999
Q ss_pred EEEe
Q psy8956 295 KVTL 298 (333)
Q Consensus 295 ~v~~ 298 (333)
+|+.
T Consensus 83 ~V~r 86 (87)
T 2hzc_A 83 KIRR 86 (87)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9974
No 323
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.63 E-value=1.9e-15 Score=109.81 Aligned_cols=76 Identities=21% Similarity=0.457 Sum_probs=67.5
Q ss_pred ccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecCCcEEEEEECCHHHHHHHHHHhCCCeeCCee-----EEEEecCC
Q psy8956 227 RKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKHIGFIEFIMPKHATHAVSTMNGHVFKSKP-----LKVTLSGT 301 (333)
Q Consensus 227 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~-----l~v~~a~~ 301 (333)
..++|||+|||..+++++|+++|++||.|..+.+..+ ++|||+|.+.++|.+|++.|||..|+|+. |+|..+.+
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~~~ 93 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGP 93 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEECC-
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccCCC
Confidence 4589999999999999999999999999999999887 99999999999999999999999999998 77777665
Q ss_pred CC
Q psy8956 302 KP 303 (333)
Q Consensus 302 ~~ 303 (333)
+.
T Consensus 94 ~~ 95 (115)
T 3beg_B 94 RS 95 (115)
T ss_dssp --
T ss_pred CC
Confidence 43
No 324
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.63 E-value=1.1e-15 Score=105.37 Aligned_cols=71 Identities=20% Similarity=0.393 Sum_probs=66.5
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhcC----C-------CeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCcc
Q psy8956 32 YKENELHVNNLEPSVDNQALINEFKKF----G-------TLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLI 100 (333)
Q Consensus 32 ~~~~~l~V~nLp~~~t~~~l~~~f~~~----g-------~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~ 100 (333)
.+.++|||+|||+.+++++|+++|++| | .|.++.+.++ +|||||+|.+.++|.+|+ .|+|..+
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~-----kg~afV~f~~~~~a~~A~-~l~g~~~ 77 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-----KNFAFLEFRSVDETTQAM-AFDGIIF 77 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS-----SSEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC-----CcEEEEEcCCHHHHHHHH-hcCCCEE
Confidence 467889999999999999999999999 8 8999988864 899999999999999999 9999999
Q ss_pred CCeeeEEe
Q psy8956 101 GSKPVIIT 108 (333)
Q Consensus 101 ~g~~i~v~ 108 (333)
.|+.|.|+
T Consensus 78 ~g~~l~V~ 85 (87)
T 2hzc_A 78 QGQSLKIR 85 (87)
T ss_dssp TTEECEEE
T ss_pred CCeEEEEe
Confidence 99999987
No 325
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.63 E-value=1.7e-15 Score=110.14 Aligned_cols=73 Identities=21% Similarity=0.267 Sum_probs=64.6
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCee-----eE
Q psy8956 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKP-----VI 106 (333)
Q Consensus 32 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~-----i~ 106 (333)
...++|||+|||+++++++|+++|.+||.|..+.|+.+ |||||+|.+.++|.+|++.||+..+.|+. +.
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~ 87 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 87 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEE
Confidence 34578999999999999999999999999999998864 89999999999999999999999999998 55
Q ss_pred Eeee
Q psy8956 107 ITFV 110 (333)
Q Consensus 107 v~~~ 110 (333)
|...
T Consensus 88 v~~~ 91 (115)
T 3beg_B 88 VKVD 91 (115)
T ss_dssp EEEC
T ss_pred eccC
Confidence 5544
No 326
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.63 E-value=5.9e-16 Score=117.38 Aligned_cols=81 Identities=23% Similarity=0.302 Sum_probs=71.2
Q ss_pred ccccceEEEeCCCCCCCHHHHHHHHhcCCCeeEE------EEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCee
Q psy8956 31 VYKENELHVNNLEPSVDNQALINEFKKFGTLRDV------RVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKP 104 (333)
Q Consensus 31 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v------~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~ 104 (333)
..++++|||+|||+.+|+++|+++|+.||.|..+ .+....++.++|||||+|.+.++|.+|+..|||..+.|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 4567899999999999999999999999988763 1222236789999999999999999999999999999999
Q ss_pred eEEeeec
Q psy8956 105 VIITFVE 111 (333)
Q Consensus 105 i~v~~~~ 111 (333)
|.|.++.
T Consensus 122 l~V~~a~ 128 (143)
T 3egn_A 122 MVVQFAR 128 (143)
T ss_dssp CEEEECC
T ss_pred EEEEECC
Confidence 9999984
No 327
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.6e-15 Score=107.49 Aligned_cols=78 Identities=13% Similarity=0.214 Sum_probs=70.2
Q ss_pred CCCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC-----CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEe
Q psy8956 224 QPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTL 298 (333)
Q Consensus 224 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~-----~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~ 298 (333)
.....++|||+|||+.+++++|+++|++||.+ .|.++.+ +++|||+|.+.++|.+|++ +|+..|+|+.|+|.+
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~ 88 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFL 88 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 44566899999999999999999999999955 8888866 7799999999999999995 799999999999999
Q ss_pred cCCCC
Q psy8956 299 SGTKP 303 (333)
Q Consensus 299 a~~~~ 303 (333)
+....
T Consensus 89 ~~~~~ 93 (102)
T 1wez_A 89 NSTAG 93 (102)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 88765
No 328
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.62 E-value=1.5e-16 Score=141.92 Aligned_cols=80 Identities=18% Similarity=0.303 Sum_probs=74.4
Q ss_pred CCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC------CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEe
Q psy8956 225 PARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTL 298 (333)
Q Consensus 225 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~------~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~ 298 (333)
..+.++|||+|||..+++++|.++|++||.|..|.|+.+ +|||||+|.+.++|.+|+..|||..|+|+.|.|.+
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~ 178 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 178 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 345689999999999999999999999999999999865 78999999999999999999999999999999999
Q ss_pred cCCCCC
Q psy8956 299 SGTKPG 304 (333)
Q Consensus 299 a~~~~~ 304 (333)
|..+..
T Consensus 179 a~~~~~ 184 (437)
T 3pgw_S 179 ERGRTV 184 (437)
T ss_pred eCCCCC
Confidence 987654
No 329
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.62 E-value=2.8e-15 Score=103.49 Aligned_cols=77 Identities=17% Similarity=0.378 Sum_probs=63.1
Q ss_pred CCCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC-CcEEEEEECCHHHHHHHHHHhCCCe--eCCeeEEEEecC
Q psy8956 224 QPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-KHIGFIEFIMPKHATHAVSTMNGHV--FKSKPLKVTLSG 300 (333)
Q Consensus 224 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~-~~~~fV~f~~~~~A~~a~~~l~g~~--l~g~~l~v~~a~ 300 (333)
...+..+|||+|||..+++++|+++|++||.|..++++.+ +|||||+|.+.++|.+ ++|.. ++|+.|.|.+|.
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a~ 82 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNAE 82 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEcC
Confidence 3456789999999999999999999999999999999877 8999999999999983 56655 459999999998
Q ss_pred CCCC
Q psy8956 301 TKPG 304 (333)
Q Consensus 301 ~~~~ 304 (333)
++..
T Consensus 83 ~k~~ 86 (89)
T 3d2w_A 83 PKHN 86 (89)
T ss_dssp ----
T ss_pred CCCc
Confidence 7654
No 330
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.62 E-value=1.4e-16 Score=114.32 Aligned_cols=79 Identities=10% Similarity=0.079 Sum_probs=72.1
Q ss_pred CCCccceEEEecCCCCCCHHHHHHHhhccCC---eeEEEeecC-----CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEE
Q psy8956 224 QPARKNKIFVANLPSNINNSEFEELFARFGT---ITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLK 295 (333)
Q Consensus 224 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~---v~~v~i~~~-----~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~ 295 (333)
.....++|||+|||..+++++|+++|+.||. |..|.++.+ +|+|||+|.+.++|.+|++ +||..|+|+.|.
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~ 85 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVE 85 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCC
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEE
Confidence 3456789999999999999999999999888 899999866 7899999999999999999 999999999999
Q ss_pred EEecCCCC
Q psy8956 296 VTLSGTKP 303 (333)
Q Consensus 296 v~~a~~~~ 303 (333)
|.++..+.
T Consensus 86 V~~a~~~~ 93 (107)
T 2lmi_A 86 VYEINNED 93 (107)
T ss_dssp CEECCHHH
T ss_pred EEECCHHH
Confidence 99997644
No 331
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.62 E-value=1.5e-15 Score=110.90 Aligned_cols=78 Identities=9% Similarity=0.131 Sum_probs=71.6
Q ss_pred CCccceEEEecCCCCCCHHHHHHHhhccCC---eeEEEeecC-----CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEE
Q psy8956 225 PARKNKIFVANLPSNINNSEFEELFARFGT---ITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296 (333)
Q Consensus 225 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~---v~~v~i~~~-----~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v 296 (333)
....++|||+|||..+++++|+++|++||. |..|+++.+ +|+|||+|.+.++|.+|++ +||..|+|+.|+|
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 92 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEV 92 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEE
Confidence 345689999999999999999999999999 889998866 7899999999999999999 9999999999999
Q ss_pred EecCCCC
Q psy8956 297 TLSGTKP 303 (333)
Q Consensus 297 ~~a~~~~ 303 (333)
.++..++
T Consensus 93 ~~a~~~~ 99 (118)
T 2db1_A 93 FKSHRTE 99 (118)
T ss_dssp EEECHHH
T ss_pred EECCHHH
Confidence 9997654
No 332
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=2.7e-15 Score=107.24 Aligned_cols=75 Identities=15% Similarity=0.331 Sum_probs=69.1
Q ss_pred CccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC-----CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEecC
Q psy8956 226 ARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSG 300 (333)
Q Consensus 226 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~-----~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~a~ 300 (333)
....+|+|+|||+.+++++|+++|++| .|..|.++.+ +|+|||+|.+.++|.+|+ .+||..|+||.|.|..+.
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 346799999999999999999999999 8999999865 789999999999999999 699999999999999987
Q ss_pred CC
Q psy8956 301 TK 302 (333)
Q Consensus 301 ~~ 302 (333)
.+
T Consensus 92 ~~ 93 (109)
T 2dnn_A 92 ER 93 (109)
T ss_dssp HH
T ss_pred cc
Confidence 64
No 333
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.62 E-value=2e-15 Score=114.42 Aligned_cols=82 Identities=24% Similarity=0.402 Sum_probs=70.9
Q ss_pred CCccceEEEecCCCCCCHHHHHHHhhccCCeeE--------EEeecC---CcEEEEEECCHHHHHHHHHHhCCCeeCCee
Q psy8956 225 PARKNKIFVANLPSNINNSEFEELFARFGTITS--------SSLVSD---KHIGFIEFIMPKHATHAVSTMNGHVFKSKP 293 (333)
Q Consensus 225 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~--------v~i~~~---~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~ 293 (333)
..++++|||+|||..+++++|+++|++||.|.. +++... +|+|||+|.+.++|.+|+..|||..|+|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 456789999999999999999999999999876 333322 889999999999999999999999999999
Q ss_pred EEEEecCCCCCCC
Q psy8956 294 LKVTLSGTKPGVS 306 (333)
Q Consensus 294 l~v~~a~~~~~~~ 306 (333)
|.|.+|+....+.
T Consensus 122 l~V~~a~~~~~~~ 134 (143)
T 3egn_A 122 MVVQFARSARPKQ 134 (143)
T ss_dssp CEEEECCCSCC--
T ss_pred EEEEECCCCCCcc
Confidence 9999998765443
No 334
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=2.4e-15 Score=109.15 Aligned_cols=74 Identities=18% Similarity=0.336 Sum_probs=62.9
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCC-C---CCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEE
Q psy8956 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-N---DESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVII 107 (333)
Q Consensus 32 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~-~---~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v 107 (333)
...++|||+|||+.+|+++|+++|++||.|. +.++.+. + |.++|||||+|.+.++|.+|++.|++ +.|+.+.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~--~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLE--EDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEE--ETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhh--cCCcEEEe
Confidence 3457899999999999999999999999998 7777766 4 68999999999999999999998832 55555555
Q ss_pred e
Q psy8956 108 T 108 (333)
Q Consensus 108 ~ 108 (333)
.
T Consensus 83 ~ 83 (114)
T 2dnl_A 83 V 83 (114)
T ss_dssp E
T ss_pred c
Confidence 4
No 335
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.61 E-value=1.5e-15 Score=112.91 Aligned_cols=78 Identities=9% Similarity=0.105 Sum_probs=71.4
Q ss_pred CCccceEEEecCCCCCCHHHHHHHhhccCC---eeEEEeecC-----CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEE
Q psy8956 225 PARKNKIFVANLPSNINNSEFEELFARFGT---ITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296 (333)
Q Consensus 225 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~---v~~v~i~~~-----~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v 296 (333)
....++|||+|||+.+++++|+++|++||. |..|+++.+ +|+|||+|.+.++|.+|++ |||..|+|+.|+|
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V 119 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEV 119 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEE
Confidence 345689999999999999999999999999 889998876 7899999999999999999 9999999999999
Q ss_pred EecCCCC
Q psy8956 297 TLSGTKP 303 (333)
Q Consensus 297 ~~a~~~~ 303 (333)
.+++.++
T Consensus 120 ~~a~~~e 126 (136)
T 2hgl_A 120 FKSHRTE 126 (136)
T ss_dssp EECCHHH
T ss_pred EECChHH
Confidence 9987643
No 336
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.61 E-value=1.5e-15 Score=123.09 Aligned_cols=81 Identities=21% Similarity=0.409 Sum_probs=72.4
Q ss_pred CCccceEEEecCCCCC---------CHHHHHHHhhccCCeeEEEeecCCcEEEEEECCHHHHHHHHHHhCCCee------
Q psy8956 225 PARKNKIFVANLPSNI---------NNSEFEELFARFGTITSSSLVSDKHIGFIEFIMPKHATHAVSTMNGHVF------ 289 (333)
Q Consensus 225 ~~~~~~l~v~nl~~~~---------~~~~l~~~f~~~g~v~~v~i~~~~~~~fV~f~~~~~A~~a~~~l~g~~l------ 289 (333)
....++|||+||+..+ ++++|+++|++||.|..|+++.++|+|||+|.+.++|..|++.|+|..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~ 210 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVESKNCGFVKFKYQANAEFAKEAMSNQTLLLPSDK 210 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHHHTTCCCCCTTST
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECCCCEEEEEeCCHHHHHHHHHHhCCCEEeccccc
Confidence 3467899999999988 6999999999999999999999999999999999999999999999999
Q ss_pred ------CCeeEEEEecCCCCCC
Q psy8956 290 ------KSKPLKVTLSGTKPGV 305 (333)
Q Consensus 290 ------~g~~l~v~~a~~~~~~ 305 (333)
+|+.|.|.||+.++.+
T Consensus 211 e~~~~~~gr~L~V~wA~~~pnp 232 (240)
T 3u1l_A 211 EWDDRREGTGLLVKWANEDPDP 232 (240)
T ss_dssp TGGGGGGSCCCEEEECC-----
T ss_pred cccccCCCCEEEEEEccCCCCH
Confidence 8999999999987543
No 337
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.61 E-value=1.1e-15 Score=108.84 Aligned_cols=80 Identities=25% Similarity=0.465 Sum_probs=71.6
Q ss_pred CCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC-----CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEec
Q psy8956 225 PARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299 (333)
Q Consensus 225 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~-----~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~a 299 (333)
....++|||+|||..+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|.+|++ +|..++|+.|.|.++
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEEC
Confidence 345689999999999999999999999999999999875 6899999999999999999 999999999999999
Q ss_pred CCCCCCC
Q psy8956 300 GTKPGVS 306 (333)
Q Consensus 300 ~~~~~~~ 306 (333)
..+....
T Consensus 84 ~~~~~~~ 90 (102)
T 2xs2_A 84 IRKQNLS 90 (102)
T ss_dssp EECC---
T ss_pred CcCcchh
Confidence 8776543
No 338
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.60 E-value=4.1e-15 Score=116.36 Aligned_cols=80 Identities=23% Similarity=0.400 Sum_probs=74.2
Q ss_pred CCCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC-----CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEe
Q psy8956 224 QPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTL 298 (333)
Q Consensus 224 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~-----~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~ 298 (333)
...++++|||+|||..+++++|+++|++||.|..|.+..+ +++|||+|.+.++|.+|++.|||..|+|+.|+|.+
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3456789999999999999999999999999999999875 68999999999999999999999999999999999
Q ss_pred cCCCC
Q psy8956 299 SGTKP 303 (333)
Q Consensus 299 a~~~~ 303 (333)
|....
T Consensus 164 a~~~~ 168 (177)
T 2f3j_A 164 VASQI 168 (177)
T ss_dssp ESSGG
T ss_pred ecCCC
Confidence 98754
No 339
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.39 E-value=7.4e-17 Score=117.75 Aligned_cols=82 Identities=26% Similarity=0.457 Sum_probs=74.7
Q ss_pred CCccceEEEecCCCCCCHHHHHHHhhccCCeeE--------EEeecC------CcEEEEEECCHHHHHHHHHHhCCCeeC
Q psy8956 225 PARKNKIFVANLPSNINNSEFEELFARFGTITS--------SSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFK 290 (333)
Q Consensus 225 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~--------v~i~~~------~~~~fV~f~~~~~A~~a~~~l~g~~l~ 290 (333)
..+.++|||+|||..+++++|+++|++||.|.. +.+..+ +++|||+|.+.++|.+|++.|||..|+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 346689999999999999999999999999988 777765 689999999999999999999999999
Q ss_pred CeeEEEEecCCCCCCC
Q psy8956 291 SKPLKVTLSGTKPGVS 306 (333)
Q Consensus 291 g~~l~v~~a~~~~~~~ 306 (333)
|+.|+|.+|+.++...
T Consensus 84 g~~l~V~~a~~~~~~~ 99 (116)
T 2lcw_A 84 GNPIKVSFATRRADFN 99 (116)
Confidence 9999999999876553
No 340
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.59 E-value=1e-15 Score=102.38 Aligned_cols=69 Identities=23% Similarity=0.375 Sum_probs=64.7
Q ss_pred eEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC------CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEec
Q psy8956 230 KIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299 (333)
Q Consensus 230 ~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~------~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~a 299 (333)
+|||+|||..+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|.+|++ +++..++|+.|.|++|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 5899999999999999999999999999998765 7899999999999999999 4899999999999886
No 341
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.59 E-value=1.1e-14 Score=103.33 Aligned_cols=80 Identities=19% Similarity=0.233 Sum_probs=71.5
Q ss_pred cccceEEEeCCCC-----CCCHHHHHHHHhcCCCeeEEEEeeCC--CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCee
Q psy8956 32 YKENELHVNNLEP-----SVDNQALINEFKKFGTLRDVRVARNK--NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKP 104 (333)
Q Consensus 32 ~~~~~l~V~nLp~-----~~t~~~l~~~f~~~g~v~~v~i~~~~--~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~ 104 (333)
.+++.|+|+|+.. .-++++|++.|++||.|.++.|.+++ ++.++|+|||+|.+.++|.+|++.|||..+.|+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 4668899999973 23789999999999999999999886 3678999999999999999999999999999999
Q ss_pred eEEeeec
Q psy8956 105 VIITFVE 111 (333)
Q Consensus 105 i~v~~~~ 111 (333)
|.|.++.
T Consensus 86 i~v~~a~ 92 (105)
T 2pe8_A 86 VKACFYN 92 (105)
T ss_dssp CEEEECC
T ss_pred EEEEEcC
Confidence 9999873
No 342
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.59 E-value=5.5e-15 Score=102.02 Aligned_cols=73 Identities=22% Similarity=0.310 Sum_probs=62.1
Q ss_pred ccccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCc--cCCeeeEEe
Q psy8956 31 VYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHL--IGSKPVIIT 108 (333)
Q Consensus 31 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~--~~g~~i~v~ 108 (333)
..+.++|||+|||+++|+++|+++|++||.|.++.++++ ++|||||+|.+.++|.+ +++.. +.|+.+.|.
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~ 79 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHIS 79 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEE
Confidence 355678999999999999999999999999999999875 79999999999999984 45554 568999999
Q ss_pred eec
Q psy8956 109 FVE 111 (333)
Q Consensus 109 ~~~ 111 (333)
++.
T Consensus 80 ~a~ 82 (89)
T 3d2w_A 80 NAE 82 (89)
T ss_dssp ECC
T ss_pred EcC
Confidence 874
No 343
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.59 E-value=8.7e-15 Score=117.43 Aligned_cols=106 Identities=22% Similarity=0.339 Sum_probs=85.4
Q ss_pred CCCCceeeccCCCCCCCCcccc-----------------------CcCCcCcccccceEEEeCCCCCCCHHHHHHHHhcC
Q psy8956 2 KSKGKILEASWDEGISDDEGAR-----------------------SNKENNKVYKENELHVNNLEPSVDNQALINEFKKF 58 (333)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~ 58 (333)
.+.|+.+++.|+....+..... .....+...+.++|+|+|||..+++++|+++|+.|
T Consensus 65 ~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~ 144 (198)
T 1qm9_A 65 KLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSN 144 (198)
T ss_dssp CCSSCCCEEEECCCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHT
T ss_pred eecCeEEEEEEecCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHc
Confidence 5789999999997632211100 00111222457899999999999999999999999
Q ss_pred C-CeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccC-CeeeEEeeec
Q psy8956 59 G-TLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIG-SKPVIITFVE 111 (333)
Q Consensus 59 g-~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~-g~~i~v~~~~ 111 (333)
| .|.++.+.++ ++|+|||+|.+.++|.+|+..|+|..+. |+.|.|.|+.
T Consensus 145 G~~v~~v~i~~~----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~ 195 (198)
T 1qm9_A 145 GGVVKGFKFFQK----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 195 (198)
T ss_dssp TSCCCEEEESST----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEEC
T ss_pred CCCceEEEEEeC----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeec
Confidence 9 9999998764 3789999999999999999999999999 9999999983
No 344
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.59 E-value=1.1e-14 Score=103.36 Aligned_cols=77 Identities=18% Similarity=0.253 Sum_probs=68.5
Q ss_pred CCccceEEEecCCC-----CCCHHHHHHHhhccCCeeEEEeecC-------CcEEEEEECCHHHHHHHHHHhCCCeeCCe
Q psy8956 225 PARKNKIFVANLPS-----NINNSEFEELFARFGTITSSSLVSD-------KHIGFIEFIMPKHATHAVSTMNGHVFKSK 292 (333)
Q Consensus 225 ~~~~~~l~v~nl~~-----~~~~~~l~~~f~~~g~v~~v~i~~~-------~~~~fV~f~~~~~A~~a~~~l~g~~l~g~ 292 (333)
..++++|+|.|+.. .-.+++|+++|++||.|.++.++.+ +|+|||+|.+.++|.+|++.|||+.++||
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 45778999999962 2367999999999999999999863 68999999999999999999999999999
Q ss_pred eEEEEecCC
Q psy8956 293 PLKVTLSGT 301 (333)
Q Consensus 293 ~l~v~~a~~ 301 (333)
.|.|.++..
T Consensus 85 ~i~v~~a~~ 93 (105)
T 2pe8_A 85 VVKACFYNL 93 (105)
T ss_dssp ECEEEECCH
T ss_pred EEEEEEcCH
Confidence 999999975
No 345
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=3.5e-15 Score=103.04 Aligned_cols=79 Identities=14% Similarity=0.339 Sum_probs=67.2
Q ss_pred CccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC-CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEecCCCCC
Q psy8956 226 ARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKPG 304 (333)
Q Consensus 226 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~-~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~a~~~~~ 304 (333)
.++++|||+|||..+++++|+++|++||.|..+++..+ +++|||+|.+.++|.+|... +..+.|+.|.|.+++++..
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~~~~~ 80 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAEPKHN 80 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCCCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecCCCCC
Confidence 35689999999999999999999999999999999877 89999999999999754221 3345899999999988765
Q ss_pred CC
Q psy8956 305 VS 306 (333)
Q Consensus 305 ~~ 306 (333)
..
T Consensus 81 ~~ 82 (88)
T 1wf0_A 81 SN 82 (88)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 346
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.8e-15 Score=111.64 Aligned_cols=78 Identities=15% Similarity=0.253 Sum_probs=68.8
Q ss_pred CCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeec-C-----CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEe
Q psy8956 225 PARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS-D-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTL 298 (333)
Q Consensus 225 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~-~-----~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~ 298 (333)
....++|||+|||..+++++|+++|++||.|..+.++. . +|+|||+|.+.++|.+|++ |||..|+|+.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 44568999999999999999999999999997743332 2 7899999999999999999 999999999999999
Q ss_pred cCCCC
Q psy8956 299 SGTKP 303 (333)
Q Consensus 299 a~~~~ 303 (333)
|..+.
T Consensus 101 a~~~~ 105 (124)
T 1wel_A 101 ITKKG 105 (124)
T ss_dssp ECHHH
T ss_pred CCHHH
Confidence 97654
No 347
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.58 E-value=6.1e-15 Score=131.57 Aligned_cols=82 Identities=18% Similarity=0.361 Sum_probs=76.9
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeee
Q psy8956 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFV 110 (333)
Q Consensus 32 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~-~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~~ 110 (333)
.+.++|||+|||+.+|+++|.++|..||.|..|.|+.+. ++.++|||||+|.+.++|.+||+.|||..|.|+.|.|.++
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 445789999999999999999999999999999999987 8899999999999999999999999999999999999998
Q ss_pred ccC
Q psy8956 111 ELK 113 (333)
Q Consensus 111 ~~~ 113 (333)
...
T Consensus 180 ~~~ 182 (437)
T 3pgw_S 180 RGR 182 (437)
T ss_pred CCC
Confidence 543
No 348
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=4.3e-14 Score=102.12 Aligned_cols=82 Identities=13% Similarity=0.283 Sum_probs=70.7
Q ss_pred CCCccceEEEecCCCCCC-----------HHHHHHHhhccCCeeEEEeecC--CcEEEEEECCHHHHHHHHHHhCCCeeC
Q psy8956 224 QPARKNKIFVANLPSNIN-----------NSEFEELFARFGTITSSSLVSD--KHIGFIEFIMPKHATHAVSTMNGHVFK 290 (333)
Q Consensus 224 ~~~~~~~l~v~nl~~~~~-----------~~~l~~~f~~~g~v~~v~i~~~--~~~~fV~f~~~~~A~~a~~~l~g~~l~ 290 (333)
...++++|+|.||..... +++|+++|++||.|..|.+... +|+|||+|.+.++|.+|+..|||..|+
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~ 90 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFG 90 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEET
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 445789999999954432 5799999999999999977433 899999999999999999999999999
Q ss_pred CeeEEEEecCCCCCC
Q psy8956 291 SKPLKVTLSGTKPGV 305 (333)
Q Consensus 291 g~~l~v~~a~~~~~~ 305 (333)
|++|+|.++.++...
T Consensus 91 gr~l~v~~a~~~~~~ 105 (112)
T 2dit_A 91 GRQITAQAWDGTTDY 105 (112)
T ss_dssp TEECEEEECCSCCCS
T ss_pred CcEEEEEEeCCCCCc
Confidence 999999999886543
No 349
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=2.5e-15 Score=103.85 Aligned_cols=76 Identities=21% Similarity=0.269 Sum_probs=63.8
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeec
Q psy8956 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVE 111 (333)
Q Consensus 32 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~~~ 111 (333)
.+.++|||+|||+++|+++|+++|++||.|.++.+.++ ++|||||+|.+.++|++|+. ....+.|+.|.|.++.
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP----FRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNAE 76 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS----CCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC----CCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEecC
Confidence 35688999999999999999999999999999998865 68999999999999986532 1234689999999874
Q ss_pred cC
Q psy8956 112 LK 113 (333)
Q Consensus 112 ~~ 113 (333)
.+
T Consensus 77 ~~ 78 (88)
T 1wf0_A 77 PK 78 (88)
T ss_dssp CC
T ss_pred CC
Confidence 33
No 350
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=9.9e-15 Score=105.91 Aligned_cols=100 Identities=18% Similarity=0.237 Sum_probs=75.7
Q ss_pred CccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC---------CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEE
Q psy8956 226 ARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD---------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296 (333)
Q Consensus 226 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~---------~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v 296 (333)
...++|||+|||..+++++|+++|++||.|. +.++.+ +|||||+|.+.++|.+|++.|+ .++|+.+.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 3568999999999999999999999999999 777643 6899999999999999999984 378888888
Q ss_pred EecCCCCCCCCCCCCCCCCCCCCCCCCCcccc
Q psy8956 297 TLSGTKPGVSITNPTKAPKKPAYIDEVKNVIG 328 (333)
Q Consensus 297 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (333)
..+.....+.....+....-..|..+..+-+|
T Consensus 83 ~~~~~~~~~~~~v~p~~~~d~~~~~~~~~~s~ 114 (114)
T 2dnl_A 83 VSSPTIKDKPVQIRPWNLSDSDFVMDSGPSSG 114 (114)
T ss_dssp ECCSSSCSEEEEEECCCCCCCCCCCCCCCSCC
T ss_pred ccCCCcCCCeeeccCCcccCCceecCCCCCCC
Confidence 77665544443333333344555554444443
No 351
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.57 E-value=5e-15 Score=120.84 Aligned_cols=75 Identities=11% Similarity=0.187 Sum_probs=69.6
Q ss_pred ccceEEEecCCCCCCHHHHHHHhhccC--CeeEEEeecC------CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEe
Q psy8956 227 RKNKIFVANLPSNINNSEFEELFARFG--TITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTL 298 (333)
Q Consensus 227 ~~~~l~v~nl~~~~~~~~l~~~f~~~g--~v~~v~i~~~------~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~ 298 (333)
..++|||+||+..+++++|+++|++|| .|..|+|+.+ ++||||+|.+.++|.+|++.|||..|+|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567899999999999999999999999 9999999876 67999999999999999999999999999999999
Q ss_pred cCC
Q psy8956 299 SGT 301 (333)
Q Consensus 299 a~~ 301 (333)
|+.
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 854
No 352
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.57 E-value=1.4e-14 Score=105.96 Aligned_cols=77 Identities=22% Similarity=0.327 Sum_probs=69.5
Q ss_pred cccccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEee
Q psy8956 30 KVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITF 109 (333)
Q Consensus 30 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~ 109 (333)
.+.+.++|||+|| ++|+++|+++|++||.|.++.+. .++|||||+|.+.++|.+|++.|+|..+.|+.|.|.+
T Consensus 35 ~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~-----~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~ 107 (121)
T 2bz2_A 35 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 107 (121)
T ss_dssp CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE-----TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe-----CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3456789999995 69999999999999999999886 3689999999999999999999999999999999999
Q ss_pred eccC
Q psy8956 110 VELK 113 (333)
Q Consensus 110 ~~~~ 113 (333)
+...
T Consensus 108 a~~~ 111 (121)
T 2bz2_A 108 ARKQ 111 (121)
T ss_dssp CCSS
T ss_pred eCCC
Confidence 8543
No 353
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.56 E-value=1.5e-14 Score=118.64 Aligned_cols=83 Identities=25% Similarity=0.436 Sum_probs=76.5
Q ss_pred CCCCCCCccceEEEecCCC-CCCHHHHHHHhhccCCeeEEEeecC-CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEE
Q psy8956 220 PPLLQPARKNKIFVANLPS-NINNSEFEELFARFGTITSSSLVSD-KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVT 297 (333)
Q Consensus 220 ~~~~~~~~~~~l~v~nl~~-~~~~~~l~~~f~~~g~v~~v~i~~~-~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~ 297 (333)
.+.....++++|||+|||. .+++++|+++|++||.|..+++..+ +++|||+|.+.++|.+|++.|||..|+|+.|.|.
T Consensus 26 ~p~~~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~ 105 (229)
T 2adc_A 26 IPGLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRIT 105 (229)
T ss_dssp CGGGGCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEE
T ss_pred CCCCCCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 3444556789999999999 9999999999999999999999988 6999999999999999999999999999999999
Q ss_pred ecCCC
Q psy8956 298 LSGTK 302 (333)
Q Consensus 298 ~a~~~ 302 (333)
+++.+
T Consensus 106 ~a~~~ 110 (229)
T 2adc_A 106 LSKHQ 110 (229)
T ss_dssp CCSCC
T ss_pred EecCc
Confidence 99865
No 354
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.54 E-value=3.3e-15 Score=111.45 Aligned_cols=78 Identities=12% Similarity=0.193 Sum_probs=70.0
Q ss_pred CCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC-----CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEec
Q psy8956 225 PARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299 (333)
Q Consensus 225 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~-----~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~a 299 (333)
....++|||+|||+.+++++|+++|++|| +..|.++.+ +|+|||+|.+.++|.+|+ .+|+..|+|+.|+|.++
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a 120 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLN 120 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEEC
Confidence 34568999999999999999999999999 669998876 789999999999999999 79999999999999999
Q ss_pred CCCCC
Q psy8956 300 GTKPG 304 (333)
Q Consensus 300 ~~~~~ 304 (333)
..+..
T Consensus 121 ~~~~~ 125 (139)
T 2hgn_A 121 STTGA 125 (139)
T ss_dssp CCSCC
T ss_pred CCCCC
Confidence 87654
No 355
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=8.7e-15 Score=106.85 Aligned_cols=77 Identities=14% Similarity=0.185 Sum_probs=68.9
Q ss_pred CccceEEEecCCCCCCHHHHHHHhhccCCe----eEEEeecC-----CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEE
Q psy8956 226 ARKNKIFVANLPSNINNSEFEELFARFGTI----TSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296 (333)
Q Consensus 226 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v----~~v~i~~~-----~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v 296 (333)
....+|||+|||+.+++++|+++|++||.| ..|.++.+ +|+|||+|.+.++|.+|++. |+..|+||.|.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEE
Confidence 345899999999999999999999999975 67888765 78999999999999999996 999999999999
Q ss_pred EecCCCC
Q psy8956 297 TLSGTKP 303 (333)
Q Consensus 297 ~~a~~~~ 303 (333)
..++.++
T Consensus 100 ~~a~~~e 106 (123)
T 2dha_A 100 FRSTAAE 106 (123)
T ss_dssp EEECHHH
T ss_pred EECCHHH
Confidence 9987643
No 356
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.53 E-value=1.5e-14 Score=105.80 Aligned_cols=75 Identities=19% Similarity=0.267 Sum_probs=67.6
Q ss_pred CccceEEEecCCCCCCHHHHHHHhhccCCee--EEEeecC-----CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEe
Q psy8956 226 ARKNKIFVANLPSNINNSEFEELFARFGTIT--SSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTL 298 (333)
Q Consensus 226 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~--~v~i~~~-----~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~ 298 (333)
...++|||+|||+.+++++|+++|++| .|. .|+++.+ +|+|||+|.+.++|.+|++ +++..|+||.|.|..
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG-KHKERIGHRYIEVFK 117 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEEEE
Confidence 456889999999999999999999999 566 8888866 8899999999999999999 578999999999999
Q ss_pred cCCC
Q psy8956 299 SGTK 302 (333)
Q Consensus 299 a~~~ 302 (333)
+..+
T Consensus 118 a~~~ 121 (126)
T 2hgm_A 118 SSQE 121 (126)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 8654
No 357
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.52 E-value=4.7e-14 Score=100.21 Aligned_cols=77 Identities=13% Similarity=0.261 Sum_probs=67.6
Q ss_pred CccceEEEecC--CCCCC--------HHHHHHHhhccCCeeEEEeecC--------CcEEEEEECCHHHHHHHHHHhCCC
Q psy8956 226 ARKNKIFVANL--PSNIN--------NSEFEELFARFGTITSSSLVSD--------KHIGFIEFIMPKHATHAVSTMNGH 287 (333)
Q Consensus 226 ~~~~~l~v~nl--~~~~~--------~~~l~~~f~~~g~v~~v~i~~~--------~~~~fV~f~~~~~A~~a~~~l~g~ 287 (333)
.++++|.+.|+ |..+. .++|++.|++||.|.+|.|+.+ +|+|||+|.+.++|.+|++.|||+
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 47789999999 33343 2689999999999999999864 689999999999999999999999
Q ss_pred eeCCeeEEEEecCCC
Q psy8956 288 VFKSKPLKVTLSGTK 302 (333)
Q Consensus 288 ~l~g~~l~v~~a~~~ 302 (333)
.++||.|+|.++...
T Consensus 83 ~f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 83 KFANRVVVTKYCDPD 97 (105)
T ss_dssp EETTEECEEEEECHH
T ss_pred EeCCCEEEEEEeCHH
Confidence 999999999998653
No 358
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.52 E-value=2.2e-14 Score=116.27 Aligned_cols=79 Identities=16% Similarity=0.328 Sum_probs=71.0
Q ss_pred ccccceEEEeCCCCCC---------CHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCcc-
Q psy8956 31 VYKENELHVNNLEPSV---------DNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLI- 100 (333)
Q Consensus 31 ~~~~~~l~V~nLp~~~---------t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~- 100 (333)
....++|||+|||..+ ++++|+++|++||.|.+|+|+. ++|||||+|.+.++|..|++.|+|..+
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~-----~kG~AFV~F~~~~~Ae~A~~am~g~~l~ 205 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE-----SKNCGFVKFKYQANAEFAKEAMSNQTLL 205 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG-----GGTEEEEEESSHHHHHHHHHHHTTCCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC-----CCCEEEEEeCCHHHHHHHHHHhCCCEEe
Confidence 3467899999999998 7999999999999999999986 489999999999999999999999999
Q ss_pred -----------CCeeeEEeeeccCC
Q psy8956 101 -----------GSKPVIITFVELKP 114 (333)
Q Consensus 101 -----------~g~~i~v~~~~~~~ 114 (333)
.|+.|.|.++...+
T Consensus 206 ~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 206 LPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp CTTSTTGGGGGGSCCCEEEECC---
T ss_pred ccccccccccCCCCEEEEEEccCCC
Confidence 89999999995444
No 359
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=2.4e-13 Score=98.14 Aligned_cols=79 Identities=22% Similarity=0.376 Sum_probs=68.1
Q ss_pred ccccceEEEeCCCCCCC-----------HHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCc
Q psy8956 31 VYKENELHVNNLEPSVD-----------NQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHL 99 (333)
Q Consensus 31 ~~~~~~l~V~nLp~~~t-----------~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~ 99 (333)
+.+++.|+|+||..... +++|+++|++||.|.++.| .+. .++|||||+|.+.++|.+|+..|+|..
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~--~~~G~afV~f~~~~~A~~Ai~~lng~~ 88 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR--HPDGVASVSFRDPEEADYCIQTLDGRW 88 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT--CTTCEEEEECSCHHHHHHHHHHSTTCE
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC--CCCEEEEEEECCHHHHHHHHHHcCCCE
Confidence 45678899999954432 5799999999999999966 443 379999999999999999999999999
Q ss_pred cCCeeeEEeeecc
Q psy8956 100 IGSKPVIITFVEL 112 (333)
Q Consensus 100 ~~g~~i~v~~~~~ 112 (333)
+.|+.|.|.++..
T Consensus 89 ~~gr~l~v~~a~~ 101 (112)
T 2dit_A 89 FGGRQITAQAWDG 101 (112)
T ss_dssp ETTEECEEEECCS
T ss_pred ECCcEEEEEEeCC
Confidence 9999999999843
No 360
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.51 E-value=9.5e-15 Score=103.67 Aligned_cols=72 Identities=19% Similarity=0.443 Sum_probs=64.8
Q ss_pred EeCCCCCCCHHHHHHHH------------hcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeE
Q psy8956 39 VNNLEPSVDNQALINEF------------KKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVI 106 (333)
Q Consensus 39 V~nLp~~~t~~~l~~~f------------~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~ 106 (333)
+.|||..+++++|++.| ++||.|.++.|.++.++.++|||||+|.+.++|.+|++.|||..+.|+.|.
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 56777777887777666 999999999999988888999999999999999999999999999999999
Q ss_pred Eeee
Q psy8956 107 ITFV 110 (333)
Q Consensus 107 v~~~ 110 (333)
|.++
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9986
No 361
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.50 E-value=7.6e-14 Score=110.82 Aligned_cols=117 Identities=15% Similarity=0.246 Sum_probs=85.8
Q ss_pred CHHHHHHHHHHh--CCceeccceeEEEeeeecCCCccCCCCCCCCCCCCccceEEEecCCCCCCHHHHHHHhhccCCeeE
Q psy8956 180 SYKAAEKAIIEM--NGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFARFGTITS 257 (333)
Q Consensus 180 ~~~~a~~a~~~l--~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~ 257 (333)
+.+.+..|++.. ....+.+....+......+. +............++|||+|||..+++++|+++|++||.|..
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p~----p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~ 138 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPSKPL----PEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLN 138 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTTSCC----CCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHTTSCCEEE
T ss_pred CHHHHHHHHhhcccceEEEecccceEEecccCCC----cccchhhhhccccCEEEecCCCCcCCHHHHHHHHhcCCCEEE
Confidence 556677777765 44455555555544311000 000000002234689999999999999999999999999999
Q ss_pred EEeecC-----CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEecCC
Q psy8956 258 SSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGT 301 (333)
Q Consensus 258 v~i~~~-----~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~a~~ 301 (333)
|+++.+ +|+|||+|.+.++|.+|+..+ +..++|++|.|.+++.
T Consensus 139 v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 139 IQMRRTLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDD 186 (193)
T ss_dssp EEEEECTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTT
T ss_pred EEEEECCCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHH
Confidence 999875 789999999999999999866 4599999999999875
No 362
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.50 E-value=4.3e-14 Score=101.50 Aligned_cols=77 Identities=12% Similarity=0.117 Sum_probs=67.5
Q ss_pred CccceEEEecCCCCCC----------HHHHHHHhhccCCeeEEEeecC--CcEEEEEECCHHHHHHHHHHhCCCeeCCee
Q psy8956 226 ARKNKIFVANLPSNIN----------NSEFEELFARFGTITSSSLVSD--KHIGFIEFIMPKHATHAVSTMNGHVFKSKP 293 (333)
Q Consensus 226 ~~~~~l~v~nl~~~~~----------~~~l~~~f~~~g~v~~v~i~~~--~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~ 293 (333)
.++++|.+.|+-..-. ++||++.|++||.|.+|.+..+ +|+|||+|.+.++|.+|++.|||+.|+||.
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~ 84 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKM 84 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 4678999999943221 2678999999999999999877 799999999999999999999999999999
Q ss_pred EEEEecCCC
Q psy8956 294 LKVTLSGTK 302 (333)
Q Consensus 294 l~v~~a~~~ 302 (333)
|.|.|+...
T Consensus 85 i~v~~~~~~ 93 (114)
T 3s6e_A 85 ITAAYVPLP 93 (114)
T ss_dssp CEEEEECHH
T ss_pred EEEEEEcHH
Confidence 999999653
No 363
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.49 E-value=1e-13 Score=98.41 Aligned_cols=79 Identities=15% Similarity=0.293 Sum_probs=69.1
Q ss_pred cccceEEEeCC--CCCCC--------HHHHHHHHhcCCCeeEEEEeeCCC---CCcccEEEEEeCCHHHHHHHHHHhcCC
Q psy8956 32 YKENELHVNNL--EPSVD--------NQALINEFKKFGTLRDVRVARNKN---DESRGFAIIVFNTPAEAKKARVEMNGH 98 (333)
Q Consensus 32 ~~~~~l~V~nL--p~~~t--------~~~l~~~f~~~g~v~~v~i~~~~~---~~~~g~a~v~f~~~e~A~~al~~l~~~ 98 (333)
.+++.|.|.|+ |.... +++|++.|++||.|.++.|.++.. +.++|+|||+|.+.++|.+|++.|||.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 35678999998 44443 368999999999999999998873 367999999999999999999999999
Q ss_pred ccCCeeeEEeee
Q psy8956 99 LIGSKPVIITFV 110 (333)
Q Consensus 99 ~~~g~~i~v~~~ 110 (333)
.+.|+.|.|.+.
T Consensus 83 ~f~GR~i~v~~~ 94 (105)
T 3v4m_A 83 KFANRVVVTKYC 94 (105)
T ss_dssp EETTEECEEEEE
T ss_pred EeCCCEEEEEEe
Confidence 999999999987
No 364
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.48 E-value=8e-14 Score=99.76 Aligned_cols=73 Identities=22% Similarity=0.331 Sum_probs=65.1
Q ss_pred ceEEEecC----CCCCCHHHHHHHhhccCCeeEEEeecC------CcEEEEEECC----HHH----HHHHHH--HhCCCe
Q psy8956 229 NKIFVANL----PSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIM----PKH----ATHAVS--TMNGHV 288 (333)
Q Consensus 229 ~~l~v~nl----~~~~~~~~l~~~f~~~g~v~~v~i~~~------~~~~fV~f~~----~~~----A~~a~~--~l~g~~ 288 (333)
..|+|+|| |+.+++.+|+++|++||.|..+.++.| +|+|||+|.+ +++ |.+|+. .++|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 67999999 999999999999999999999999988 8899999995 333 899988 789999
Q ss_pred eCCeeEEEEecCC
Q psy8956 289 FKSKPLKVTLSGT 301 (333)
Q Consensus 289 l~g~~l~v~~a~~ 301 (333)
|+|++|+|.+-+.
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 9999999997643
No 365
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.46 E-value=2.5e-13 Score=98.29 Aligned_cols=78 Identities=19% Similarity=0.294 Sum_probs=68.9
Q ss_pred ccceEEEeCCCC--CC---CHHHHHHHHhcCCCeeEEEEeeCCC-----CCcccEEEEEeCCHHHHHHHHHHhcCCccCC
Q psy8956 33 KENELHVNNLEP--SV---DNQALINEFKKFGTLRDVRVARNKN-----DESRGFAIIVFNTPAEAKKARVEMNGHLIGS 102 (333)
Q Consensus 33 ~~~~l~V~nLp~--~~---t~~~l~~~f~~~g~v~~v~i~~~~~-----~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g 102 (333)
+++.|+|.|+-. .+ .+++|++.|++||.|.++.|+++.. +.++|+|||+|.+.++|.+|++.|||..+.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 578899999842 22 4688999999999999999998763 4578999999999999999999999999999
Q ss_pred eeeEEeee
Q psy8956 103 KPVIITFV 110 (333)
Q Consensus 103 ~~i~v~~~ 110 (333)
+.|.|.+.
T Consensus 99 R~i~v~~~ 106 (118)
T 3ue2_A 99 RKVVAEVY 106 (118)
T ss_dssp EECEEEEE
T ss_pred cEEEEEEc
Confidence 99999987
No 366
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.45 E-value=3.3e-13 Score=97.63 Aligned_cols=76 Identities=17% Similarity=0.343 Sum_probs=66.7
Q ss_pred CccceEEEecCCC--CC---CHHHHHHHhhccCCeeEEEeecC----------CcEEEEEECCHHHHHHHHHHhCCCeeC
Q psy8956 226 ARKNKIFVANLPS--NI---NNSEFEELFARFGTITSSSLVSD----------KHIGFIEFIMPKHATHAVSTMNGHVFK 290 (333)
Q Consensus 226 ~~~~~l~v~nl~~--~~---~~~~l~~~f~~~g~v~~v~i~~~----------~~~~fV~f~~~~~A~~a~~~l~g~~l~ 290 (333)
.++++|++.|+-. .+ .++||++.|++||.|.+|.|+.+ +|++||+|.+.++|.+|++.|||+.|+
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 3678999999942 22 35899999999999999998875 279999999999999999999999999
Q ss_pred CeeEEEEecCC
Q psy8956 291 SKPLKVTLSGT 301 (333)
Q Consensus 291 g~~l~v~~a~~ 301 (333)
||.|.|.|+..
T Consensus 98 GR~i~v~~~~~ 108 (118)
T 3ue2_A 98 GRKVVAEVYDQ 108 (118)
T ss_dssp TEECEEEEECH
T ss_pred CcEEEEEEcCh
Confidence 99999999865
No 367
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=3e-12 Score=89.55 Aligned_cols=65 Identities=23% Similarity=0.360 Sum_probs=58.0
Q ss_pred CCCCHHHHHHHhhccCCeeEEEeecC-CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEecCCCCC
Q psy8956 238 SNINNSEFEELFARFGTITSSSLVSD-KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKPG 304 (333)
Q Consensus 238 ~~~~~~~l~~~f~~~g~v~~v~i~~~-~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~a~~~~~ 304 (333)
..+++++|+++|++||.|..|.++.. +|||||+|.+.++|.+|++.+++ +.|++|+|.|++.++.
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~~ 92 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQPQ 92 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCCC
Confidence 46899999999999999999999744 89999999999999999998554 6899999999988754
No 368
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.42 E-value=6e-13 Score=113.81 Aligned_cols=80 Identities=15% Similarity=0.268 Sum_probs=71.0
Q ss_pred CCCCccceEEEec--CCCCCCHHHHHHHhhccCCeeEEEeecCCcEEEEEECCHHHHHHHHHHhCCCeeC---Ce--eEE
Q psy8956 223 LQPARKNKIFVAN--LPSNINNSEFEELFARFGTITSSSLVSDKHIGFIEFIMPKHATHAVSTMNGHVFK---SK--PLK 295 (333)
Q Consensus 223 ~~~~~~~~l~v~n--l~~~~~~~~l~~~f~~~g~v~~v~i~~~~~~~fV~f~~~~~A~~a~~~l~g~~l~---g~--~l~ 295 (333)
....++.+|||+| |+..+++++|+++|++||.|..|.+..+++||||+|.+.++|.+|++.|||..+. |+ .|.
T Consensus 13 ~~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly 92 (345)
T 3tht_A 13 TVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLY 92 (345)
T ss_dssp CCSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCTTCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECE
T ss_pred ecCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEE
Confidence 3467889999999 5789999999999999999999999888999999999999999999999999882 45 688
Q ss_pred EEecCCC
Q psy8956 296 VTLSGTK 302 (333)
Q Consensus 296 v~~a~~~ 302 (333)
+.|+..-
T Consensus 93 ~~~~~~~ 99 (345)
T 3tht_A 93 LNFVEKV 99 (345)
T ss_dssp EEECSSE
T ss_pred EEEeecc
Confidence 8888643
No 369
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.41 E-value=7e-13 Score=93.99 Aligned_cols=56 Identities=18% Similarity=0.345 Sum_probs=50.7
Q ss_pred HHHHh-hccCCeeEEEeecC-----CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEecC
Q psy8956 245 FEELF-ARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSG 300 (333)
Q Consensus 245 l~~~f-~~~g~v~~v~i~~~-----~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~a~ 300 (333)
|+++| ++||.|.++.+..+ +|+|||+|.+.++|.+|+..|||+.++||+|+|.|+.
T Consensus 43 l~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~v~~sp 104 (104)
T 1jmt_A 43 VFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELSP 104 (104)
T ss_dssp HHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECCEEECC
T ss_pred HHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEEEEEcC
Confidence 34444 99999999999876 7899999999999999999999999999999999874
No 370
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=5.4e-12 Score=88.27 Aligned_cols=65 Identities=22% Similarity=0.393 Sum_probs=56.5
Q ss_pred CCCCHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeeccCC
Q psy8956 44 PSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKP 114 (333)
Q Consensus 44 ~~~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~~~~~~ 114 (333)
..+++++|+++|++||.|.+|.|+. .++|||||+|.+.++|..|++.+++ +.|+.|.|.++...+
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~----~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~ 91 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSS----KKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQP 91 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEES----SSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEcc----CCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCC
Confidence 5689999999999999999999883 5799999999999999999987544 689999999885443
No 371
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.36 E-value=4.8e-12 Score=84.74 Aligned_cols=76 Identities=21% Similarity=0.392 Sum_probs=65.1
Q ss_pred CCCccceEEEecCC----CCCCH----HHHHHHhhccCCeeEEEeecCCcEEEEEECCHHHHHHHHHHhCCCeeCCeeEE
Q psy8956 224 QPARKNKIFVANLP----SNINN----SEFEELFARFGTITSSSLVSDKHIGFIEFIMPKHATHAVSTMNGHVFKSKPLK 295 (333)
Q Consensus 224 ~~~~~~~l~v~nl~----~~~~~----~~l~~~f~~~g~v~~v~i~~~~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~ 295 (333)
..++..|++|+-.+ ..+-+ .+|.+.|.+||.|..+++..++ +||+|.+.++|.+|++ |||..++||.|+
T Consensus 3 ~GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--~fVtF~d~~sAlaAi~-mnG~~v~Gr~Lk 79 (91)
T 2dnr_A 3 SGSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--MWVTFLEGSSALNVLS-LNGKELLNRTIT 79 (91)
T ss_dssp CCCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--EEEEESSHHHHHHGGG-GTTCEETTEEEE
T ss_pred CCCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--EEEEECChHHHHHHHh-cCCeEeCCeEEE
Confidence 34567788888776 23434 6789999999999999999764 9999999999999999 999999999999
Q ss_pred EEecCCC
Q psy8956 296 VTLSGTK 302 (333)
Q Consensus 296 v~~a~~~ 302 (333)
|+++++.
T Consensus 80 V~lkt~d 86 (91)
T 2dnr_A 80 IALKSPS 86 (91)
T ss_dssp EEECCCS
T ss_pred EEeCCCC
Confidence 9999875
No 372
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.34 E-value=2.5e-12 Score=109.99 Aligned_cols=76 Identities=24% Similarity=0.413 Sum_probs=64.9
Q ss_pred cccccceEEEeC--CCCCCCHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCcc---CCe-
Q psy8956 30 KVYKENELHVNN--LEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLI---GSK- 103 (333)
Q Consensus 30 ~~~~~~~l~V~n--Lp~~~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~---~g~- 103 (333)
...++++|||+| |+..+|+++|+++|++||.|.+|.+.. ++|||||+|.+.++|++|++.|||..+ .|+
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~-----~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~ 88 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 88 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT-----TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCccccccCCc
Confidence 345667899999 578999999999999999999887654 589999999999999999999999986 344
Q ss_pred -eeEEeee
Q psy8956 104 -PVIITFV 110 (333)
Q Consensus 104 -~i~v~~~ 110 (333)
.+.+.|.
T Consensus 89 ~~ly~~~~ 96 (345)
T 3tht_A 89 ITLYLNFV 96 (345)
T ss_dssp EECEEEEC
T ss_pred eEEEEEEe
Confidence 5667776
No 373
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.31 E-value=1.2e-11 Score=88.77 Aligned_cols=76 Identities=18% Similarity=0.263 Sum_probs=64.9
Q ss_pred cccceEEEeCCCCCC----------CHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccC
Q psy8956 32 YKENELHVNNLEPSV----------DNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIG 101 (333)
Q Consensus 32 ~~~~~l~V~nLp~~~----------t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~ 101 (333)
.+++.|.|.|+=... .+++|++.|++||.|.++.+.++. .+|+|||+|.+.++|.+|++.|||..+.
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~---~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS---AQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC---TTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC---CcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 456778888875432 234678999999999999887653 4899999999999999999999999999
Q ss_pred CeeeEEeee
Q psy8956 102 SKPVIITFV 110 (333)
Q Consensus 102 g~~i~v~~~ 110 (333)
|+.|.|.|+
T Consensus 82 GR~i~v~~~ 90 (114)
T 3s6e_A 82 GKMITAAYV 90 (114)
T ss_dssp TEECEEEEE
T ss_pred CEEEEEEEE
Confidence 999999987
No 374
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.26 E-value=4.2e-11 Score=85.87 Aligned_cols=78 Identities=15% Similarity=0.143 Sum_probs=71.2
Q ss_pred CCCccceEEEecCCCC-CCHHHHHHHhhccCCeeEEEeecCCcEEEEEECC-HHHHHHHHHHhC--CCeeCCeeEEEEec
Q psy8956 224 QPARKNKIFVANLPSN-INNSEFEELFARFGTITSSSLVSDKHIGFIEFIM-PKHATHAVSTMN--GHVFKSKPLKVTLS 299 (333)
Q Consensus 224 ~~~~~~~l~v~nl~~~-~~~~~l~~~f~~~g~v~~v~i~~~~~~~fV~f~~-~~~A~~a~~~l~--g~~l~g~~l~v~~a 299 (333)
.-+.++.|+|+|++.. ++.++|+++|++||.|..|.+..+...|||+|.+ ..+|..|+..|| |..|+|..+++...
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~evL 93 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVL 93 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEEC
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEEC
Confidence 4457799999999999 9999999999999999999999998899999999 899999999995 77899999999876
Q ss_pred CC
Q psy8956 300 GT 301 (333)
Q Consensus 300 ~~ 301 (333)
..
T Consensus 94 ~G 95 (121)
T 1owx_A 94 EG 95 (121)
T ss_dssp CH
T ss_pred CC
Confidence 54
No 375
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.19 E-value=1e-10 Score=78.60 Aligned_cols=76 Identities=14% Similarity=0.235 Sum_probs=65.0
Q ss_pred CCCCccceEEEecCCCC-----CCH----HHHHHHhhccCCeeEEEeecCCcEEEEEECCHHHHHHHHHHhCCCeeCCee
Q psy8956 223 LQPARKNKIFVANLPSN-----INN----SEFEELFARFGTITSSSLVSDKHIGFIEFIMPKHATHAVSTMNGHVFKSKP 293 (333)
Q Consensus 223 ~~~~~~~~l~v~nl~~~-----~~~----~~l~~~f~~~g~v~~v~i~~~~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~ 293 (333)
...++..|++|.-++.. +-+ .+|.+.|.+||.|..+++..++ +||+|.+.++|.+|++ |||..++||.
T Consensus 10 ~~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--~fVtF~d~~sAl~AI~-ldG~~v~Gr~ 86 (95)
T 1ufw_A 10 FQGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--MLVTFADSHSALSVLD-VDGMKVKGRA 86 (95)
T ss_dssp CCCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--EEEECSCSHHHHHHHH-GGGSEETTEE
T ss_pred ecCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--EEEEEcChHHHHHHHh-cCCeeeCCeE
Confidence 35567789999988643 333 5689999999999999999774 9999999999999999 9999999999
Q ss_pred EEEEecCC
Q psy8956 294 LKVTLSGT 301 (333)
Q Consensus 294 l~v~~a~~ 301 (333)
|+|++..+
T Consensus 87 L~V~~k~~ 94 (95)
T 1ufw_A 87 VKISGPSS 94 (95)
T ss_dssp EEEECCCC
T ss_pred EEEeccCC
Confidence 99998653
No 376
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.08 E-value=5.4e-10 Score=80.08 Aligned_cols=75 Identities=17% Similarity=0.128 Sum_probs=65.5
Q ss_pred ccccceEEEeCCCCC-CCHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCC-HHHHHHHHHHhc--CCccCCeeeE
Q psy8956 31 VYKENELHVNNLEPS-VDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNT-PAEAKKARVEMN--GHLIGSKPVI 106 (333)
Q Consensus 31 ~~~~~~l~V~nLp~~-~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~-~e~A~~al~~l~--~~~~~g~~i~ 106 (333)
-.+...|+|+||+.. ++.++|+++|+.||.|..|.+.++. ..|||+|.+ .++|..|+..++ +..|.|..++
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~-----~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~ 89 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGA-----KEGIILFKEKAKEALGKAKDANNGNLQLRNKEVT 89 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTC-----SEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEE
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCC-----CEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEE
Confidence 356678999999999 9999999999999999999988764 359999999 899999999984 6678998888
Q ss_pred Eeee
Q psy8956 107 ITFV 110 (333)
Q Consensus 107 v~~~ 110 (333)
++..
T Consensus 90 ~evL 93 (121)
T 1owx_A 90 WEVL 93 (121)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 8754
No 377
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.03 E-value=8.7e-10 Score=73.83 Aligned_cols=67 Identities=18% Similarity=0.297 Sum_probs=57.7
Q ss_pred eEEEeCCC----CCCCH----HHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEE
Q psy8956 36 ELHVNNLE----PSVDN----QALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVII 107 (333)
Q Consensus 36 ~l~V~nLp----~~~t~----~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v 107 (333)
+|+|.-.| .++-+ .+|.+.|.+||.|..+++..+. +||+|.+.++|.+|++ |+|..+.|+.|+|
T Consensus 9 tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~-------~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV 80 (91)
T 2dnr_A 9 TVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK-------MWVTFLEGSSALNVLS-LNGKELLNRTITI 80 (91)
T ss_dssp EEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS-------EEEEESSHHHHHHGGG-GTTCEETTEEEEE
T ss_pred eEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC-------EEEEECChHHHHHHHh-cCCeEeCCeEEEE
Confidence 47777666 34444 6688999999999999999763 9999999999999997 9999999999999
Q ss_pred eee
Q psy8956 108 TFV 110 (333)
Q Consensus 108 ~~~ 110 (333)
+++
T Consensus 81 ~lk 83 (91)
T 2dnr_A 81 ALK 83 (91)
T ss_dssp EEC
T ss_pred EeC
Confidence 987
No 378
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.95 E-value=8.2e-09 Score=70.67 Aligned_cols=72 Identities=22% Similarity=0.226 Sum_probs=68.5
Q ss_pred ccceEEEecCCCCCCHHHHHHHhhcc-----CCeeEEEeecCCcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEe
Q psy8956 227 RKNKIFVANLPSNINNSEFEELFARF-----GTITSSSLVSDKHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTL 298 (333)
Q Consensus 227 ~~~~l~v~nl~~~~~~~~l~~~f~~~-----g~v~~v~i~~~~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~ 298 (333)
..+++-+-|||..+++..|+.+.+++ |.+..+.+..+.+-|+|+|.+...|-+|...|+|..|+|+.|+|.-
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gT 96 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGT 96 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCCceEEEEccchhhHHHHhhcCCeeecCeEEEecC
Confidence 35889999999999999999999999 9999999999999999999999999999999999999999999853
No 379
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.86 E-value=4.4e-09 Score=85.53 Aligned_cols=62 Identities=18% Similarity=0.323 Sum_probs=56.3
Q ss_pred CCHHHHHHHhhccCCeeEEEeecC----------CcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEecCC
Q psy8956 240 INNSEFEELFARFGTITSSSLVSD----------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGT 301 (333)
Q Consensus 240 ~~~~~l~~~f~~~g~v~~v~i~~~----------~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~a~~ 301 (333)
-.+++|++.|++||.|..+.++.+ +|++||+|.+.++|.+|++.|||+.++||.|.+.++..
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 356889999999999999999733 68999999999999999999999999999999999864
No 380
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.84 E-value=7.3e-09 Score=84.22 Aligned_cols=65 Identities=22% Similarity=0.291 Sum_probs=59.1
Q ss_pred CCHHHHHHHHhcCCCeeEEEEeeCC-----CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeee
Q psy8956 46 VDNQALINEFKKFGTLRDVRVARNK-----NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFV 110 (333)
Q Consensus 46 ~t~~~l~~~f~~~g~v~~v~i~~~~-----~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~~ 110 (333)
-.+++|++.|.+||.|.++.+.++. ++.++|++||+|.+.++|.+|++.|+|..+.||.|.+.|.
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~ 210 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVY 210 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEc
Confidence 3567899999999999999998655 3479999999999999999999999999999999999987
No 381
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.82 E-value=8.6e-09 Score=69.32 Aligned_cols=68 Identities=19% Similarity=0.280 Sum_probs=57.9
Q ss_pred ceEEEeCCCCC-----CCH----HHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeee
Q psy8956 35 NELHVNNLEPS-----VDN----QALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPV 105 (333)
Q Consensus 35 ~~l~V~nLp~~-----~t~----~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i 105 (333)
-+|+|.-++.. +-+ .+|.+.|..||.|..+++..++ +||+|.+.++|.+|++ |+|..+.|+.|
T Consensus 16 ~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~-------~fVtF~d~~sAl~AI~-ldG~~v~Gr~L 87 (95)
T 1ufw_A 16 ATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ-------MLVTFADSHSALSVLD-VDGMKVKGRAV 87 (95)
T ss_dssp CEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE-------EEEECSCSHHHHHHHH-GGGSEETTEEE
T ss_pred CeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc-------EEEEEcChHHHHHHHh-cCCeeeCCeEE
Confidence 35888877643 433 5588999999999999999763 9999999999999997 99999999999
Q ss_pred EEeee
Q psy8956 106 IITFV 110 (333)
Q Consensus 106 ~v~~~ 110 (333)
+|++.
T Consensus 88 ~V~~k 92 (95)
T 1ufw_A 88 KISGP 92 (95)
T ss_dssp EEECC
T ss_pred EEecc
Confidence 99864
No 382
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.61 E-value=2.5e-07 Score=63.38 Aligned_cols=72 Identities=19% Similarity=0.197 Sum_probs=66.2
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhcC-----CCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeE
Q psy8956 32 YKENELHVNNLEPSVDNQALINEFKKF-----GTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVI 106 (333)
Q Consensus 32 ~~~~~l~V~nLp~~~t~~~l~~~f~~~-----g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~ 106 (333)
+..++|=|-|||..+++..|+.+++.+ |.+..+.+..+..| |+|+|.+...|-+|.-.|+|..|.|+.|.
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~G-----Aivef~d~~~AgKasLaL~G~ef~gr~Lr 93 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFNG-----AIIIFRDSKFAAKMLMILNGSQFQGKVIR 93 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTTE-----EEEECSCHHHHHHHHHHHSSEEETTEEEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCCc-----eEEEEccchhhHHHHhhcCCeeecCeEEE
Confidence 446789999999999999999999999 99999988887555 99999999999999989999999999999
Q ss_pred Ee
Q psy8956 107 IT 108 (333)
Q Consensus 107 v~ 108 (333)
+.
T Consensus 94 ~g 95 (117)
T 2l9w_A 94 SG 95 (117)
T ss_dssp EE
T ss_pred ec
Confidence 86
No 383
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.55 E-value=6.6e-07 Score=61.27 Aligned_cols=76 Identities=18% Similarity=0.237 Sum_probs=65.9
Q ss_pred cceEEEecCCCCC-CH----HHHHHHhhccCCeeEEEeecCCcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEecCCC
Q psy8956 228 KNKIFVANLPSNI-NN----SEFEELFARFGTITSSSLVSDKHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302 (333)
Q Consensus 228 ~~~l~v~nl~~~~-~~----~~l~~~f~~~g~v~~v~i~~~~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~a~~~ 302 (333)
.++|+|.|++..+ .. +.++++|.+|+++......++-.-..|.|.+.++|.+|...|++..+.|+.++|.|+...
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~~ 84 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQTL 84 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCCCS
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcceEEEEEeCChHHHHHHHHHhccceecCceeEEEecCCC
Confidence 3689999998654 22 567999999999988888888667899999999999999999999999999999999844
Q ss_pred C
Q psy8956 303 P 303 (333)
Q Consensus 303 ~ 303 (333)
.
T Consensus 85 ~ 85 (104)
T 1wey_A 85 H 85 (104)
T ss_dssp S
T ss_pred C
Confidence 3
No 384
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.41 E-value=3.5e-06 Score=57.37 Aligned_cols=88 Identities=15% Similarity=0.232 Sum_probs=69.2
Q ss_pred ccceEEEeCCCCCCCHHHHHHHHhc---C--CCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEE
Q psy8956 33 KENELHVNNLEPSVDNQALINEFKK---F--GTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVII 107 (333)
Q Consensus 33 ~~~~l~V~nLp~~~t~~~l~~~f~~---~--g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v 107 (333)
-..+|.|.|||+.+.++.|.-+|+. - |+|.++.... +.|+|+|.+.+.|++.|+. ....+.+..+.|
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~-------~~AvItF~d~~va~rVL~k-~~H~L~~~~LsV 78 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG-------CGGVLTFREPADAERVLAQ-ADHELHGAQLSL 78 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET-------TEEEEEESSHHHHHHHHTC-SCCBSSSSBCEE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC-------CcEEEEEcChHHHHHHhcC-CcceecCeEEEE
Confidence 3467999999999999999999988 2 3888887664 4599999999999999954 466789999999
Q ss_pred eeeccCCCCCCCCCCCCcccCCCCeEEEeCCCCCCC
Q psy8956 108 TFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVD 143 (333)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~ 143 (333)
.... .....+|.+.+|++.++
T Consensus 79 ~P~~---------------~~~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 79 RPAP---------------PRAPARLLLQGLPPGTS 99 (104)
T ss_dssp EECC---------------CCCCCCCCCCSCCCCCC
T ss_pred EcCC---------------CCCcceEeeecCCCCCC
Confidence 8541 12345678888877664
No 385
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.16 E-value=6.5e-05 Score=51.16 Aligned_cols=79 Identities=15% Similarity=0.216 Sum_probs=65.9
Q ss_pred ccceEEEecCCCCCCHHHHHHHhhc-----cCCeeEEEeecCCcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEecCC
Q psy8956 227 RKNKIFVANLPSNINNSEFEELFAR-----FGTITSSSLVSDKHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGT 301 (333)
Q Consensus 227 ~~~~l~v~nl~~~~~~~~l~~~f~~-----~g~v~~v~i~~~~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~a~~ 301 (333)
-..+|.|.|+|..++++.|.-+|+. -|.|..+.... +.|+|+|.+.+.|.+.++ -..+.|.|.+|.|.....
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--~~AvItF~d~~va~rVL~-k~~H~L~~~~LsV~P~~~ 83 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--CGGVLTFREPADAERVLA-QADHELHGAQLSLRPAPP 83 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--TEEEEEESSHHHHHHHHT-CSCCBSSSSBCEEEECCC
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--CcEEEEEcChHHHHHHhc-CCcceecCeEEEEEcCCC
Confidence 3478999999999999999999986 24688888875 899999999999999988 446889999999988777
Q ss_pred CCCCCCC
Q psy8956 302 KPGVSIT 308 (333)
Q Consensus 302 ~~~~~~~ 308 (333)
+.....-
T Consensus 84 ~~~~r~l 90 (104)
T 2dhx_A 84 RAPARLL 90 (104)
T ss_dssp CCCCCCC
T ss_pred CCcceEe
Confidence 6655443
No 386
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.95 E-value=5e-05 Score=51.01 Aligned_cols=58 Identities=17% Similarity=0.300 Sum_probs=48.0
Q ss_pred ccccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhc
Q psy8956 31 VYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96 (333)
Q Consensus 31 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~ 96 (333)
+...+.++| ++|+.+.-.||.++|+.||.| .|+.+.| ..|||.|.+++.|..|++.+.
T Consensus 13 p~r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidD------TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 13 PKRDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD------TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCCCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEET------TEEEEECSCHHHHHHHHHHHH
T ss_pred CCCCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcC------CeEEEEecCHHHHHHHHHhcc
Confidence 344566777 899999999999999999966 3677765 359999999999999998763
No 387
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.94 E-value=5.5e-05 Score=50.96 Aligned_cols=68 Identities=13% Similarity=0.172 Sum_probs=56.4
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCC-C-C-CcccEEEEEeCCHHHHHHHHHHhcCCccCC
Q psy8956 35 NELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-N-D-ESRGFAIIVFNTPAEAKKARVEMNGHLIGS 102 (333)
Q Consensus 35 ~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~-~-~-~~~g~a~v~f~~~e~A~~al~~l~~~~~~g 102 (333)
.+|-|++||+.+|++++.+.+..++.+......... + + ....-|||.|.+.+++....+.++|..+.+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 479999999999999999999999988777666555 2 1 233459999999999999999999998644
No 388
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.91 E-value=7e-05 Score=50.32 Aligned_cols=58 Identities=29% Similarity=0.556 Sum_probs=48.3
Q ss_pred CCccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecCCcEEEEEECCHHHHHHHHHHhC
Q psy8956 225 PARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKHIGFIEFIMPKHATHAVSTMN 285 (333)
Q Consensus 225 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~~~~~fV~f~~~~~A~~a~~~l~ 285 (333)
.....++++ ++|..+...||.++|+.||.| .|+.+.+ ..|||.|.+.+.|..|+..++
T Consensus 13 p~r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidD-TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 13 PKRDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD-TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCCCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEET-TEEEEECSCHHHHHHHHHHHH
T ss_pred CCCCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcC-CeEEEEecCHHHHHHHHHhcc
Confidence 344567777 999999999999999999966 4555544 799999999999999999764
No 389
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.86 E-value=0.00012 Score=50.20 Aligned_cols=72 Identities=15% Similarity=0.184 Sum_probs=62.3
Q ss_pred ceEEEeCCCCCC-CH----HHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEee
Q psy8956 35 NELHVNNLEPSV-DN----QALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITF 109 (333)
Q Consensus 35 ~~l~V~nLp~~~-t~----~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~ 109 (333)
++|+|+||+..+ .. +.++.+|..|+++.....+++ -+-..|.|.++++|.+|-..|++..+.|+.++|=+
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS-----FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YF 80 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS-----FKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYF 80 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT-----TTEEEEECSSTTHHHHHHHTSTTSEETTEECEEEC
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc-----ceEEEEEeCChHHHHHHHHHhccceecCceeEEEe
Confidence 679999999866 32 457889999999988888875 44589999999999999999999999999999988
Q ss_pred ec
Q psy8956 110 VE 111 (333)
Q Consensus 110 ~~ 111 (333)
+.
T Consensus 81 gq 82 (104)
T 1wey_A 81 AQ 82 (104)
T ss_dssp CC
T ss_pred cC
Confidence 85
No 390
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.54 E-value=0.00046 Score=48.68 Aligned_cols=71 Identities=20% Similarity=0.258 Sum_probs=60.5
Q ss_pred ccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecCCcEEEEEECCHHHHHHHHHHhCCCeeCC-eeEEEEec
Q psy8956 227 RKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKHIGFIEFIMPKHATHAVSTMNGHVFKS-KPLKVTLS 299 (333)
Q Consensus 227 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~~~~~fV~f~~~~~A~~a~~~l~g~~l~g-~~l~v~~a 299 (333)
..+-|.|-++|.. ....+...|++||.|.+.......+...|+|.+..+|.+||. .||..|+| -.|-|...
T Consensus 23 ~~~wVtVFGFp~~-~~~~VL~~F~~~G~Iv~~~~~~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 23 DDTWVTVFGFPQA-SASYILLQFAQYGNILKHVMSNTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGEEEEECCCGG-GHHHHHHHHHTTSCEEEEEECSSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEEC
T ss_pred CCCEEEEECCCHH-HHHHHHHHHHhhCcEEEeccCCCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEEC
Confidence 4577889999877 467788999999999988886568899999999999999999 79999984 77777774
No 391
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.53 E-value=0.00031 Score=49.52 Aligned_cols=72 Identities=14% Similarity=0.274 Sum_probs=56.5
Q ss_pred ccccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCC-eeeEEee
Q psy8956 31 VYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGS-KPVIITF 109 (333)
Q Consensus 31 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g-~~i~v~~ 109 (333)
....+-|.|-|.|+.. .+.|.+.|++||.|.+... .. ......|.|.+..+|++||.. ||..+.| --|=|.+
T Consensus 21 ~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~---~~--~~NWihI~Y~s~~~A~rAL~k-NG~ii~g~~mIGV~p 93 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVM---SN--TGNWMHIRYQSKLQARKALSK-DGRIFGESIMIGVKP 93 (119)
T ss_dssp CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEE---CS--SSSEEEEEESSHHHHHHHHTT-TTCEETTTEECEEEE
T ss_pred CCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEecc---CC--CCCeEEEEeCCHHHHHHHHHh-CCeEecCCEEEEEEE
Confidence 3456889999999996 5568999999999997755 22 356799999999999999964 9998875 4455543
No 392
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.51 E-value=0.00016 Score=48.78 Aligned_cols=55 Identities=20% Similarity=0.334 Sum_probs=46.2
Q ss_pred cceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhc
Q psy8956 34 ENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96 (333)
Q Consensus 34 ~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~ 96 (333)
.+.++| ++|+.+.-.||.++|+.||.| .|+.+.| ..|||.|.+++.|..|++.+.
T Consensus 6 ~HV~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidD------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 6 DHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEET------TEEEEEEEEECHHHHHHHHHT
T ss_pred CeEEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcC------CeEEEEecCHHHHHHHHHhcc
Confidence 345556 899999999999999999955 5777765 359999999999999998764
No 393
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.46 E-value=0.00065 Score=45.70 Aligned_cols=73 Identities=16% Similarity=0.268 Sum_probs=60.3
Q ss_pred ceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC--------CcEEEEEECCHHHHHHHHHHhCCCeeCC-----eeEE
Q psy8956 229 NKIFVANLPSNINNSEFEELFARFGTITSSSLVSD--------KHIGFIEFIMPKHATHAVSTMNGHVFKS-----KPLK 295 (333)
Q Consensus 229 ~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~--------~~~~fV~f~~~~~A~~a~~~l~g~~l~g-----~~l~ 295 (333)
+.|.|.+||+.++++++.+.++....+....+..+ ..-|||.|.+.+++....+.++|+.|-+ .+..
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~ 81 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI 81 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence 46899999999999999999999988888777666 3469999999999999999999998843 2344
Q ss_pred EEecCC
Q psy8956 296 VTLSGT 301 (333)
Q Consensus 296 v~~a~~ 301 (333)
|.+|.-
T Consensus 82 VE~AP~ 87 (91)
T 1uw4_A 82 VEFAPF 87 (91)
T ss_dssp EEECSS
T ss_pred EEEcCC
Confidence 555543
No 394
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.38 E-value=0.00034 Score=47.18 Aligned_cols=54 Identities=28% Similarity=0.522 Sum_probs=46.4
Q ss_pred ceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecCCcEEEEEECCHHHHHHHHHHhC
Q psy8956 229 NKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKHIGFIEFIMPKHATHAVSTMN 285 (333)
Q Consensus 229 ~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~~~~~fV~f~~~~~A~~a~~~l~ 285 (333)
.++++ ++|..+...||.++|+.||.| .|+.+.+ ..|||.|.+.+.|..|+..++
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidD-TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD-TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEET-TEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcC-CeEEEEecCHHHHHHHHHhcc
Confidence 45666 999999999999999999955 5666555 799999999999999999875
No 395
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.18 E-value=0.00037 Score=47.14 Aligned_cols=71 Identities=13% Similarity=0.166 Sum_probs=51.6
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCC-C-C-CcccEEEEEeCCHHHHHHHHHHhcCCccCC
Q psy8956 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-N-D-ESRGFAIIVFNTPAEAKKARVEMNGHLIGS 102 (333)
Q Consensus 32 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~-~-~-~~~g~a~v~f~~~e~A~~al~~l~~~~~~g 102 (333)
..+.+|.|+.||+.+|++++.+.+...-.+......... + + ....-|||.|.+.++.....+..+|..+.+
T Consensus 7 ~~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 7 HHSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp CCCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred ccceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 345679999999999999999888776554432222222 1 1 122349999999999999999999987644
No 396
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.76 E-value=0.0015 Score=46.64 Aligned_cols=76 Identities=25% Similarity=0.329 Sum_probs=53.4
Q ss_pred ccceEEEeCCCCCCCHHHHHHHHhcCCCeeEE-EEee------------CC-CC-CcccEEEEEeCCHHHHHHHHHHhcC
Q psy8956 33 KENELHVNNLEPSVDNQALINEFKKFGTLRDV-RVAR------------NK-ND-ESRGFAIIVFNTPAEAKKARVEMNG 97 (333)
Q Consensus 33 ~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v-~i~~------------~~-~~-~~~g~a~v~f~~~e~A~~al~~l~~ 97 (333)
....|.|-|.|+..+.. +.+.|++||.|.+- ...+ .+ .. ...+...|+|.+..+|.+||.. ||
T Consensus 6 ~e~~VtVFGFp~~~~~~-VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~-NG 83 (132)
T 3p3d_A 6 GELAILVFGYPETMANQ-VIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE-NG 83 (132)
T ss_dssp --CEEEEECCCGGGHHH-HHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT-TT
T ss_pred CceEEEEEecCHHHHHH-HHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh-CC
Confidence 34568999998776655 88999999998751 1111 00 00 0245689999999999999965 99
Q ss_pred CccCCeeeEEeee
Q psy8956 98 HLIGSKPVIITFV 110 (333)
Q Consensus 98 ~~~~g~~i~v~~~ 110 (333)
..+.|.-|=|.+.
T Consensus 84 ~ii~G~mIGV~Py 96 (132)
T 3p3d_A 84 AVFNGVLLGVIPY 96 (132)
T ss_dssp CEETTEECEEEEC
T ss_pred eEeCcEEEEEEEC
Confidence 9999986666644
No 397
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.61 E-value=0.0013 Score=58.30 Aligned_cols=57 Identities=7% Similarity=0.178 Sum_probs=43.6
Q ss_pred cccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHH
Q psy8956 32 YKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARV 93 (333)
Q Consensus 32 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~ 93 (333)
...|.|+|. .|...++.+|.++|++||+|.++.+.++. ..||.|||.+.+++..++.
T Consensus 51 qa~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~----g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 51 QAQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF----GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HHHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS----SEEEEEECC---CCHHHHS
T ss_pred HhcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC----CeEEEEEeCCHHHHHHHHh
Confidence 346889998 79999999999999999999998777653 4799999999999997764
No 398
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.57 E-value=0.0043 Score=44.37 Aligned_cols=71 Identities=27% Similarity=0.309 Sum_probs=54.2
Q ss_pred cceEEEecCCCCCCHHHHHHHhhccCCeeE-EEee-------------------cCCcEEEEEECCHHHHHHHHHHhCCC
Q psy8956 228 KNKIFVANLPSNINNSEFEELFARFGTITS-SSLV-------------------SDKHIGFIEFIMPKHATHAVSTMNGH 287 (333)
Q Consensus 228 ~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~-v~i~-------------------~~~~~~fV~f~~~~~A~~a~~~l~g~ 287 (333)
..-+.|-+.|.. ....+-+.|++||.|.. +... ...+...|+|++..+|.+|+. .||.
T Consensus 7 e~~VtVFGFp~~-~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPET-MANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGA 84 (132)
T ss_dssp -CEEEEECCCGG-GHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTC
T ss_pred ceEEEEEecCHH-HHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCe
Confidence 355777788765 45567788999999865 2221 125678999999999999999 8999
Q ss_pred eeCCeeEEEEecC
Q psy8956 288 VFKSKPLKVTLSG 300 (333)
Q Consensus 288 ~l~g~~l~v~~a~ 300 (333)
.|+|..|-|.+..
T Consensus 85 ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 85 VFNGVLLGVIPYT 97 (132)
T ss_dssp EETTEECEEEECC
T ss_pred EeCcEEEEEEECC
Confidence 9999988887664
No 399
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.43 E-value=0.011 Score=39.88 Aligned_cols=73 Identities=15% Similarity=0.286 Sum_probs=55.3
Q ss_pred cceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecC--------CcEEEEEECCHHHHHHHHHHhCCCeeCC-----eeE
Q psy8956 228 KNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD--------KHIGFIEFIMPKHATHAVSTMNGHVFKS-----KPL 294 (333)
Q Consensus 228 ~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~--------~~~~fV~f~~~~~A~~a~~~l~g~~l~g-----~~l 294 (333)
+-.|.|..||+.++++++.+.++..-.+....+... -.-|||.|.+.++.....+.++|..|-+ -+-
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a 88 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPA 88 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeee
Confidence 457999999999999998888776555544444433 3358999999999999999999998843 334
Q ss_pred EEEecC
Q psy8956 295 KVTLSG 300 (333)
Q Consensus 295 ~v~~a~ 300 (333)
.|.+|.
T Consensus 89 ~VE~AP 94 (97)
T 2l08_A 89 VVEFAP 94 (97)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 556654
No 400
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.32 E-value=0.0031 Score=55.95 Aligned_cols=55 Identities=15% Similarity=0.330 Sum_probs=42.7
Q ss_pred cceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecCCc-EEEEEECCHHHHHHHHHH
Q psy8956 228 KNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKH-IGFIEFIMPKHATHAVST 283 (333)
Q Consensus 228 ~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~~~-~~fV~f~~~~~A~~a~~~ 283 (333)
.+.|+|+ .|...++.+|.++|++||.|.++.+..++| ||.|+|.+.+++..++..
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFGLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSSEEEEEECC---CCHHHHSS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCCeEEEEEeCCHHHHHHHHhc
Confidence 3789998 688999999999999999999999888855 899999999998877653
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=93.22 E-value=0.63 Score=42.09 Aligned_cols=57 Identities=18% Similarity=0.290 Sum_probs=46.5
Q ss_pred ccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcC
Q psy8956 33 KENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNG 97 (333)
Q Consensus 33 ~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~ 97 (333)
..+.++|+ +|+.+...+|.+.|+.||.+ +|..+. ...|||.|.+.+.|..+++.++.
T Consensus 439 R~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~wid------dt~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 439 RDHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWID------DTSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECS------SSEEEEECSCHHHHHHHHHHHTT
T ss_pred cCcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEc------CCeEEEEECCHHHHHHHHHHHHh
Confidence 34567776 99999999999999999965 465554 34599999999999999998753
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=91.38 E-value=1 Score=40.77 Aligned_cols=57 Identities=26% Similarity=0.477 Sum_probs=46.8
Q ss_pred ccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecCCcEEEEEECCHHHHHHHHHHhCC
Q psy8956 227 RKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKHIGFIEFIMPKHATHAVSTMNG 286 (333)
Q Consensus 227 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~~~~~fV~f~~~~~A~~a~~~l~g 286 (333)
+..+++++ +|..+...+|.+.|+.||.| .|+.+. ...|||.|.+.+.|..++..++.
T Consensus 439 R~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~wid-dt~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 439 RDHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWID-DTSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECS-SSEEEEECSCHHHHHHHHHHHTT
T ss_pred cCcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEc-CCeEEEEECCHHHHHHHHHHHHh
Confidence 44566666 99999999999999999965 555544 47899999999999999998864
No 403
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=78.12 E-value=2.1 Score=27.20 Aligned_cols=60 Identities=20% Similarity=0.369 Sum_probs=40.2
Q ss_pred CCCCHHHHHHHhhccCC-----eeEEEeecCCcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEecC
Q psy8956 238 SNINNSEFEELFARFGT-----ITSSSLVSDKHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSG 300 (333)
Q Consensus 238 ~~~~~~~l~~~f~~~g~-----v~~v~i~~~~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~a~ 300 (333)
..+...+|..++..-+. |-.+.+. ..+.||+-.. +.|..+++.|++..+.|+.+.+..++
T Consensus 11 ~~~~p~~ivg~i~~~~gi~~~~IG~I~i~--d~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 11 KKIRAVDFVGTIAKIDGVSADDIGIITIM--DNASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp ----CHHHHHHHHTSTTCCGGGEEEEEEC--SSCEEEEECT-TCHHHHHHHHTTCCC---CCCEEECC
T ss_pred cCCCHHHHHHHHHHccCCChhhccEEEEe--CCcEEEEECH-HHHHHHHHHhccccCcCceEEEEECC
Confidence 35667777777765454 4445554 4589998866 57889999999999999999998775
No 404
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=75.21 E-value=14 Score=23.98 Aligned_cols=60 Identities=13% Similarity=0.164 Sum_probs=47.8
Q ss_pred ccccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcC
Q psy8956 31 VYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNG 97 (333)
Q Consensus 31 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~ 97 (333)
...++-|.|-|+|..+-..++.-.....|.--.+..+ -|.|.+.|.+.++-..|++.|-+
T Consensus 9 ikqnclikiinipqgtlkaevvlavrhlgyefycdyi-------dgqamirfqnsdeqrlaiqklln 68 (129)
T 4eyt_A 9 IKQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI-------DGQAMIRFQNSDEQRLAIQKLLN 68 (129)
T ss_dssp -CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC-------SSCEEEEESSHHHHHHHHHHHEE
T ss_pred hhhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee-------cCeeEEEecCChHHHHHHHHHHh
Confidence 3445778999999999999998888888855555444 46799999999999999988743
No 405
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=68.15 E-value=17 Score=23.81 Aligned_cols=56 Identities=9% Similarity=0.086 Sum_probs=42.4
Q ss_pred EEEeCCCCCCCHHHHHHHHhc-CC-CeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHH
Q psy8956 37 LHVNNLEPSVDNQALINEFKK-FG-TLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVE 94 (333)
Q Consensus 37 l~V~nLp~~~t~~~l~~~f~~-~g-~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~ 94 (333)
-++-.....++..+|++.++. || .|..|..+..+.| ..-|||++....+|...-+.
T Consensus 25 ~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~--~KKA~V~L~~~~~a~dva~k 82 (86)
T 3j21_T 25 KLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPRG--EKKAYVKLKPEYSASEVAAR 82 (86)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTTS--CEEEEEEECTTSCHHHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCCC--ceEEEEEcCCCCcHHHHHHh
Confidence 344446799999999999988 78 8888887765544 34599999988888766544
No 406
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=67.63 E-value=15 Score=27.57 Aligned_cols=50 Identities=28% Similarity=0.287 Sum_probs=37.3
Q ss_pred ceEEEeCCCC-C--------CCHHHHHHHH--hcCCCeeEEEEeeCCCCCcccEEEEEeCCHH
Q psy8956 35 NELHVNNLEP-S--------VDNQALINEF--KKFGTLRDVRVARNKNDESRGFAIIVFNTPA 86 (333)
Q Consensus 35 ~~l~V~nLp~-~--------~t~~~l~~~f--~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e 86 (333)
-.+.|-|+|. . ....+|++.| ..|.++. ++.+....| +.|+|.|+|.+--
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~~G-h~g~aIv~F~~dw 73 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNYLG-HSGTAIVEFNKDW 73 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECSSB-EEEEEEEECCSSH
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccCCC-CceeEEEEecCCh
Confidence 3477888887 2 3457899977 8899875 667776655 7899999997643
No 407
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=58.76 E-value=38 Score=22.67 Aligned_cols=70 Identities=14% Similarity=0.177 Sum_probs=50.5
Q ss_pred EecCCCCCCHHHHHHHh-hccCCeeEEEeecCCcEEEEEECCHHHHHHHHHHhCCCeeCCeeEEEEecCCCCCC
Q psy8956 233 VANLPSNINNSEFEELF-ARFGTITSSSLVSDKHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKPGV 305 (333)
Q Consensus 233 v~nl~~~~~~~~l~~~f-~~~g~v~~v~i~~~~~~~fV~f~~~~~A~~a~~~l~g~~l~g~~l~v~~a~~~~~~ 305 (333)
|=-++..+.-++|..-. +.||.-.++... .....|-..+.+|..+|++.|+. .-.-+.|+|-+..++...
T Consensus 21 Ii~f~RPv~f~eL~~Kv~~~fGq~ldL~y~--n~EllIpl~sQeDLDkaIellDr-ss~~kSLrIlL~~~~~~~ 91 (103)
T 2cu1_A 21 ILQFPRPVKLEDLRSKAKIAFGQSMDLHYT--NNELVIPLTTQDDLDKAVELLDR-SIHMKSLKILLVINGSTQ 91 (103)
T ss_dssp EEEEESSCCHHHHHHHHHHHHSSCEEEEEC--SSSSCEECCSHHHHHHHHHHHHH-CSSCCSEEEEEEECCCCS
T ss_pred EEeccCCccHHHHHHHHHHHhCCeeeEEEe--cceEEEeccCHHHHHHHHHHHcc-CCcccceEEEEecCCCCc
Confidence 33456778888876655 468876666665 45788999999999999998753 345567777777766554
No 408
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=53.61 E-value=19 Score=23.50 Aligned_cols=54 Identities=7% Similarity=0.178 Sum_probs=40.4
Q ss_pred EEEeCCCCCCCHHHHHHHHhc-CC-CeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHH
Q psy8956 37 LHVNNLEPSVDNQALINEFKK-FG-TLRDVRVARNKNDESRGFAIIVFNTPAEAKKAR 92 (333)
Q Consensus 37 l~V~nLp~~~t~~~l~~~f~~-~g-~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al 92 (333)
-++-..+..++..+|++.++. || .|..|..+..+.+ ..-|||++....+|....
T Consensus 24 ~~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~~~~~~--~KKA~VtL~~g~~aid~~ 79 (85)
T 1vq8_S 24 KLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMDG--EKKAVVRLSEDDDAQEVA 79 (85)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTS--SEEEEEEECTTSCHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCceEEEeeecCCC--ceEEEEEECCCCcHHHHH
Confidence 344457899999999999987 78 8888877765543 445999998877765544
No 409
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=44.34 E-value=49 Score=23.85 Aligned_cols=56 Identities=11% Similarity=0.097 Sum_probs=40.6
Q ss_pred EEEeCCCCCCCHHHHHHHHhc-CC-CeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHH
Q psy8956 37 LHVNNLEPSVDNQALINEFKK-FG-TLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVE 94 (333)
Q Consensus 37 l~V~nLp~~~t~~~l~~~f~~-~g-~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~ 94 (333)
-++--+...++..+|++.++. || .|..|..+....| ..-|||.+....+|...-+.
T Consensus 81 ~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g--~KKAyV~L~~~~daldvAnk 138 (142)
T 3u5e_X 81 ILVFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRPNG--TKKAYVRLTADYDALDIANR 138 (142)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHSCCEEEEEEEECTTS--CEEEEEEECTTCCHHHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCC--ceEEEEEeCCCCcHHHHHHh
Confidence 344446788999999999877 67 7888877766554 33499999888777665443
No 410
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=43.19 E-value=49 Score=24.07 Aligned_cols=56 Identities=13% Similarity=0.154 Sum_probs=40.8
Q ss_pred EEEeCCCCCCCHHHHHHHHhc-CC-CeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHH
Q psy8956 37 LHVNNLEPSVDNQALINEFKK-FG-TLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVE 94 (333)
Q Consensus 37 l~V~nLp~~~t~~~l~~~f~~-~g-~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~ 94 (333)
-++--+....+..+|++.++. || .|..|..+....| ..-|||.+....+|...-+.
T Consensus 89 ~~vF~Vd~kAnK~qIK~AVEklf~VkV~kVNTl~~p~g--~KKAyV~La~~~dAldvAnk 146 (150)
T 4a17_R 89 TMVFYVHNRSTKPQIKSAFEKLYNVKVRSVNTLNTITG--NKKAYIRLAADSDSLTLANK 146 (150)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTS--CEEEEEEECSSSCHHHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCC--cEEEEEEcCCCCcHHHHHHh
Confidence 344446788999999999877 67 7888877766554 33499999888777665443
No 411
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=41.04 E-value=72 Score=20.70 Aligned_cols=59 Identities=15% Similarity=0.192 Sum_probs=44.4
Q ss_pred ccceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecCCcEEEEEECCHHHHHHHHHHhCCC
Q psy8956 227 RKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKHIGFIEFIMPKHATHAVSTMNGH 287 (333)
Q Consensus 227 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~~~~~fV~f~~~~~A~~a~~~l~g~ 287 (333)
..+-+.|-|+|..+-..++.-...-.|---.+..+ .|.|.+.|.+.++...|++.|-++
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyi--dgqamirfqnsdeqrlaiqkllnh 69 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI--DGQAMIRFQNSDEQRLAIQKLLNH 69 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC--SSCEEEEESSHHHHHHHHHHHEET
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee--cCeeEEEecCChHHHHHHHHHHhc
Confidence 34678899999988888776665556654555555 579999999999999898876443
No 412
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=38.48 E-value=65 Score=19.42 Aligned_cols=56 Identities=11% Similarity=-0.033 Sum_probs=43.8
Q ss_pred ccceEEEeCCCCCCCHHHHHHHHhcCCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHH
Q psy8956 33 KENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVE 94 (333)
Q Consensus 33 ~~~~l~V~nLp~~~t~~~l~~~f~~~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~ 94 (333)
...++.|.|+...--...|.+.+.. ..|..+.+-.. .+.+.|+|.+.++...+++.
T Consensus 5 ~~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~-----~~~~~v~~~~~~~i~~~i~~ 60 (73)
T 3fry_A 5 EKIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLN-----EAVVAGNKEDVDKYIKAVEA 60 (73)
T ss_dssp EEEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSS-----EEEEEEEGGGHHHHHHHHHH
T ss_pred EEEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEcc-----CCEEEEEECCHHHHHHHHHH
Confidence 4467899999988888899999999 88887766543 56688888866677777765
No 413
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=36.79 E-value=65 Score=23.64 Aligned_cols=56 Identities=11% Similarity=0.108 Sum_probs=40.8
Q ss_pred EEEeCCCCCCCHHHHHHHHhc-CC-CeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHH
Q psy8956 37 LHVNNLEPSVDNQALINEFKK-FG-TLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVE 94 (333)
Q Consensus 37 l~V~nLp~~~t~~~l~~~f~~-~g-~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~ 94 (333)
-|+-.+...++..+|++.++. || .|..|..+.-..| ..-|||.+....+|....+.
T Consensus 95 ~yvF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~~--~KKAiVtL~~g~~aid~~~k 152 (156)
T 2zkr_s 95 TLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDG--EKKAYVRLAPDYDALDVANK 152 (156)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECSSS--CEEEEEEECTTSCHHHHHHH
T ss_pred cEEEEEECCCCHHHHHHHHHHHhCCcceEEEeeEcCCC--ceEEEEEECCCCcHHHHHHh
Confidence 344446789999999999987 78 8888877765544 44599999888776655443
No 414
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=36.31 E-value=67 Score=21.63 Aligned_cols=47 Identities=15% Similarity=0.333 Sum_probs=31.5
Q ss_pred CCCCHHHHHHHHhc-CC---CeeEEEEeeCC--CCCcccEEEEEeCCHHHHHHH
Q psy8956 44 PSVDNQALINEFKK-FG---TLRDVRVARNK--NDESRGFAIIVFNTPAEAKKA 91 (333)
Q Consensus 44 ~~~t~~~l~~~f~~-~g---~v~~v~i~~~~--~~~~~g~a~v~f~~~e~A~~a 91 (333)
.+.+..+|++.+.. |+ .+.-|.=++.. .|.+.|||.| |.+.+.|++.
T Consensus 28 ~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk~ 80 (101)
T 1xn9_A 28 STPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQV 80 (101)
T ss_dssp SCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 56688888877654 44 33334444444 4568888877 8999888765
No 415
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=35.78 E-value=79 Score=21.53 Aligned_cols=47 Identities=11% Similarity=0.195 Sum_probs=31.1
Q ss_pred CCCCHHHHHHHHhc-CC---CeeEEEEeeCC--CCCcccEEEEEeCCHHHHHHH
Q psy8956 44 PSVDNQALINEFKK-FG---TLRDVRVARNK--NDESRGFAIIVFNTPAEAKKA 91 (333)
Q Consensus 44 ~~~t~~~l~~~f~~-~g---~v~~v~i~~~~--~~~~~g~a~v~f~~~e~A~~a 91 (333)
.+.+..+|++.+.. |+ .+.-|.=++.. .|.+.|||.| |.+.+.|++.
T Consensus 37 ~tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk~ 89 (107)
T 2v94_A 37 PTPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLYI 89 (107)
T ss_dssp CCCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 45678888877644 44 23334444555 4568899987 9999998754
No 416
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=35.66 E-value=71 Score=21.57 Aligned_cols=46 Identities=13% Similarity=0.159 Sum_probs=30.7
Q ss_pred CCCCHHHHHHHHhc-CC---CeeEEEEeeCC--CCCcccEEEEEeCCHHHHHH
Q psy8956 44 PSVDNQALINEFKK-FG---TLRDVRVARNK--NDESRGFAIIVFNTPAEAKK 90 (333)
Q Consensus 44 ~~~t~~~l~~~f~~-~g---~v~~v~i~~~~--~~~~~g~a~v~f~~~e~A~~ 90 (333)
.+.+..+|++.+.. |+ .+.-|.=++.. .|.+.|||.| |.+.+.|++
T Consensus 28 ~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 79 (102)
T 1ywx_A 28 ATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI-YNDEKAMAT 79 (102)
T ss_dssp CCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 55688888877654 33 33334444444 4668899977 899998874
No 417
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_X 2go5_4 2j37_4
Probab=34.49 E-value=47 Score=24.23 Aligned_cols=53 Identities=13% Similarity=0.159 Sum_probs=38.9
Q ss_pred EEeCCCCCCCHHHHHHHHhc-CC-CeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHH
Q psy8956 38 HVNNLEPSVDNQALINEFKK-FG-TLRDVRVARNKNDESRGFAIIVFNTPAEAKKAR 92 (333)
Q Consensus 38 ~V~nLp~~~t~~~l~~~f~~-~g-~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al 92 (333)
|+--+....+..+|++.++. || .|..|..+....| ..-|||.+....+|...-
T Consensus 92 ~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g--~KKAyV~L~~~~daldvA 146 (152)
T 3iz5_X 92 LVFIVDLKADKKKIKAAVKKMYDIQAKKVNTLIRPDG--KKKAYVKLTPDYDALDVA 146 (152)
T ss_dssp EEEEECSSCCSHHHHHHHHHHHTCCEEEEEEEECTTS--SEEEEEEECTTSCHHHHH
T ss_pred EEEEEcCCCCHHHHHHHHHHHhCCcceEEEeeEcCCC--ceEEEEEcCCCCcHHHHH
Confidence 33446788888889988877 67 7888877765544 345999998887776654
No 418
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=31.86 E-value=1.1e+02 Score=20.05 Aligned_cols=34 Identities=9% Similarity=0.225 Sum_probs=25.1
Q ss_pred CeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcC
Q psy8956 60 TLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNG 97 (333)
Q Consensus 60 ~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~ 97 (333)
.|.++.+... -.||.||++...++...++....|
T Consensus 39 ~i~~v~vP~~----fPGYVfVe~~~~~~~~~~I~~t~g 72 (92)
T 3lpe_A 39 DVYSILASES----LKGYVLVEAETKGDVEELIKGMPR 72 (92)
T ss_dssp CEEEEEECTT----STTEEEEEESSHHHHHHHHTTCTT
T ss_pred cEEEEEEecc----cCCEEEEEEecchhHHHHHHCCCC
Confidence 4666655433 589999999999999888865444
No 419
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=30.25 E-value=1.7e+02 Score=21.84 Aligned_cols=47 Identities=19% Similarity=0.275 Sum_probs=32.3
Q ss_pred eEEEecCCC---------CCCHHHHHHHh--hccCCeeEEEeecC---CcEEEEEECCHHH
Q psy8956 230 KIFVANLPS---------NINNSEFEELF--ARFGTITSSSLVSD---KHIGFIEFIMPKH 276 (333)
Q Consensus 230 ~l~v~nl~~---------~~~~~~l~~~f--~~~g~v~~v~i~~~---~~~~fV~f~~~~~ 276 (333)
+.+|.|+|. .....+|++.| ..|.++.-..+... .+++.|.|.+.-.
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~dw~ 74 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKDWN 74 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECSSBEEEEEEEECCSSHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccCCCCceeEEEEecCChH
Confidence 466777775 24457899977 89999764444433 6689999995433
No 420
>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y
Probab=29.97 E-value=1.4e+02 Score=21.30 Aligned_cols=47 Identities=28% Similarity=0.419 Sum_probs=31.6
Q ss_pred CCCCHHHHHHHHhc-CC---CeeEEEEeeCC--CCCcccEEEEEeCCHHHHHHH
Q psy8956 44 PSVDNQALINEFKK-FG---TLRDVRVARNK--NDESRGFAIIVFNTPAEAKKA 91 (333)
Q Consensus 44 ~~~t~~~l~~~f~~-~g---~v~~v~i~~~~--~~~~~g~a~v~f~~~e~A~~a 91 (333)
...+..+|++.+.. |+ .+.-|.=++.. .|.+.|||.| |.+.+.|.+.
T Consensus 33 aTpsr~eIrekLAk~y~~~~d~VvV~g~rT~fG~gkstGfa~I-Yds~d~akk~ 85 (135)
T 3u5c_Y 33 ANVSKDELREKLAEVYKAEKDAVSVFGFRTQFGGGKSVGFGLV-YNSVAEAKKF 85 (135)
T ss_dssp CCCCHHHHHHHHHTTTTSCGGGEEEEEEEECTTSSEEEEEEEE-ESSHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEeccCCceEEEEEEE-eCCHHHHHhc
Confidence 45688999988744 55 22334444444 4568888888 9999988753
No 421
>3lo3_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.38A {Colwellia psychrerythraea} SCOP: d.58.4.0
Probab=25.52 E-value=1.4e+02 Score=19.52 Aligned_cols=21 Identities=14% Similarity=0.140 Sum_probs=17.7
Q ss_pred cccEEEEEeCCHHHHHHHHHH
Q psy8956 74 SRGFAIIVFNTPAEAKKARVE 94 (333)
Q Consensus 74 ~~g~a~v~f~~~e~A~~al~~ 94 (333)
......|+|++.+.|.++...
T Consensus 52 ~~~~viieFps~~aa~a~y~S 72 (94)
T 3lo3_A 52 HKAQVILEFPSREDAYNWYHS 72 (94)
T ss_dssp CSEEEEEEESSHHHHHHHHHS
T ss_pred CCeEEEEECCCHHHHHHHHCC
Confidence 456799999999999998753
No 422
>3bgu_A Ferredoxin-like protein of unknown function; ferredoxin-like fold, stress responsive A/B barrel domain, S genomics; 1.50A {Thermobifida fusca}
Probab=25.21 E-value=1.7e+02 Score=20.03 Aligned_cols=58 Identities=3% Similarity=0.048 Sum_probs=36.1
Q ss_pred cceEEEeCCCCCCCHHHHHHHHhc-------CCCeeEEEEeeCCCCCcccE---EEEEeCCHHHHHHHH
Q psy8956 34 ENELHVNNLEPSVDNQALINEFKK-------FGTLRDVRVARNKNDESRGF---AIIVFNTPAEAKKAR 92 (333)
Q Consensus 34 ~~~l~V~nLp~~~t~~~l~~~f~~-------~g~v~~v~i~~~~~~~~~g~---a~v~f~~~e~A~~al 92 (333)
.+.|+++ |.+.++++++.++... ...|.++.+-.+..+.+.|| .+++|.+.++-....
T Consensus 23 ~HIVlfk-lK~~~s~e~~~~~~~~l~~L~~~ip~i~~~~~G~~~s~~~~g~d~~l~~~F~s~edl~~Y~ 90 (116)
T 3bgu_A 23 RHIALFR-WNDTVTPDQVEQVITALSKLPAAIPELKNYAFGADLGLAAGNYDFAVVADLDGEDGFRAYQ 90 (116)
T ss_dssp EEEEEEE-ECTTCCHHHHHHHHHHHHHCCCCCTTEEEEEEEECCSCSTTCCSEEEEEEEEHHHHHHHHH
T ss_pred EEEEEEE-ECCCCCHHHHHHHHHHHHHHhhcCCceEEEEEccCCCCCCCCeeEEEEEEECCHHHHHHHh
Confidence 3455555 8889988876655432 44677777777665443444 456777777765443
No 423
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=22.88 E-value=96 Score=21.04 Aligned_cols=33 Identities=18% Similarity=0.187 Sum_probs=26.5
Q ss_pred eeEEEeecC-CcEEEEEECCHHHHHHHHHHhCCC
Q psy8956 255 ITSSSLVSD-KHIGFIEFIMPKHATHAVSTMNGH 287 (333)
Q Consensus 255 v~~v~i~~~-~~~~fV~f~~~~~A~~a~~~l~g~ 287 (333)
|.++-.... +||.||+=.+..+...|++.+.+.
T Consensus 41 I~Si~~~~~lkGyIyVEA~~~~~V~~ai~gi~~v 74 (106)
T 3h7h_B 41 IKSVVAPEHVKGYIYVEAYKQTHVKQAIEGVGNL 74 (106)
T ss_dssp CCEEEECTTCCSEEEEEESSHHHHHHHHTTCGGG
T ss_pred eEEEEecCCCceEEEEEeCCHHHHHHHHhcccce
Confidence 666666655 999999999999999998866543
No 424
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=22.10 E-value=1.3e+02 Score=17.52 Aligned_cols=55 Identities=15% Similarity=0.154 Sum_probs=39.2
Q ss_pred ceEEEecCCCCCCHHHHHHHhhccCCeeEEEeecCCcEEEEEECC---HHHHHHHHHH
Q psy8956 229 NKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKHIGFIEFIM---PKHATHAVST 283 (333)
Q Consensus 229 ~~l~v~nl~~~~~~~~l~~~f~~~g~v~~v~i~~~~~~~fV~f~~---~~~A~~a~~~ 283 (333)
.++.|.++.-.--...+...+.....|..+.+....+.+.|.|.. .++...+++.
T Consensus 4 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~ 61 (69)
T 4a4j_A 4 INLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILTDAVER 61 (69)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTCCHHHHHHHHHH
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCHHHHHHHHHH
Confidence 356777776544557788888888889888888778888898853 3444555553
No 425
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_P
Probab=21.34 E-value=1.7e+02 Score=21.20 Aligned_cols=47 Identities=19% Similarity=0.286 Sum_probs=31.2
Q ss_pred CCCCHHHHHHHHhc-CC---CeeEEEEeeCC--CCCcccEEEEEeCCHHHHHHH
Q psy8956 44 PSVDNQALINEFKK-FG---TLRDVRVARNK--NDESRGFAIIVFNTPAEAKKA 91 (333)
Q Consensus 44 ~~~t~~~l~~~f~~-~g---~v~~v~i~~~~--~~~~~g~a~v~f~~~e~A~~a 91 (333)
...+..+|++.+.. |+ .+.-|.=++.. .|.+.|||.| |.+.+.|...
T Consensus 31 aTpSk~eIrekLAkmy~~~~d~VvV~g~rT~fGggkStGfa~I-YDs~e~aKk~ 83 (149)
T 2xzm_P 31 PTASKEKIREELAKQLKVDARNVVVYGFSTQYGGGKSTGFALV-YDNQQYLLKY 83 (149)
T ss_dssp CSCCHHHHHHHHHHHHTCCGGGEEEEEECCCSSSSEEEEEEEE-ESCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-eCCHHHHHhh
Confidence 45678888887655 44 22333334444 4568899988 9999998754
No 426
>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3
Probab=21.14 E-value=69 Score=21.44 Aligned_cols=47 Identities=17% Similarity=0.183 Sum_probs=27.5
Q ss_pred CCCCHHHHHHHHhc-CC---CeeEEEEeeCC--CCCcccEEEEEeCCHHHHHHH
Q psy8956 44 PSVDNQALINEFKK-FG---TLRDVRVARNK--NDESRGFAIIVFNTPAEAKKA 91 (333)
Q Consensus 44 ~~~t~~~l~~~f~~-~g---~v~~v~i~~~~--~~~~~g~a~v~f~~~e~A~~a 91 (333)
.+.+..+|++.+.. |+ .+.-|.=++.. .|.+.|||.| |.+.+.|++.
T Consensus 29 ~tpsk~eirekLA~~~~~~~~~vvv~~~~t~fG~gks~G~a~I-Yds~e~~kk~ 81 (98)
T 2g1d_A 29 RTPSREEIKELIAKHEGVDKELVIVDNNKQLTGKHEIEGYTKI-YADKPSAMLY 81 (98)
T ss_dssp SCCCHHHHHHHHHHHHHSCSTTEECCCCCCCSSSSEEEEEEEE-ESHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 35677888776544 33 22222222333 3568888877 8888887654
No 427
>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A {Staphylococcus aureus}
Probab=21.11 E-value=1.7e+02 Score=26.20 Aligned_cols=96 Identities=7% Similarity=0.143 Sum_probs=50.0
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhc---CCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeec
Q psy8956 35 NELHVNNLEPSVDNQALINEFKK---FGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVE 111 (333)
Q Consensus 35 ~~l~V~nLp~~~t~~~l~~~f~~---~g~v~~v~i~~~~~~~~~g~a~v~f~~~e~A~~al~~l~~~~~~g~~i~v~~~~ 111 (333)
.+|.|+-||..++.+.+.+.+.. -+.+..|.=+++.+.+..---.|++....+++..++.|-. --.+...++
T Consensus 276 ~~IvITElPy~v~k~~lie~I~~lv~~kki~~I~dirDesd~~gvrivIelk~~~~~e~vl~~L~k----~t~Lq~s~~- 350 (514)
T 2inr_A 276 KQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELKKDVNSESIKNYLYK----NSDLQISYN- 350 (514)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHHHHHHTSCC---CEEECCBTTBCCEEEEC------CHHHHHHTT----SSTTEEEEE-
T ss_pred cEEEEEecCceeeHHHHHHHHHHHHhcCCcCccchhhhcCCCCceEEEEEECCCcCHHHHHHHHHH----hcCceeeee-
Confidence 57999999999988887765443 2343333334455333323355677776677666665422 233333333
Q ss_pred cCCCCCCCCCCCCcccCCCCeEEEeCCCCCCCHHHHHHHhh
Q psy8956 112 LKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFI 152 (333)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~ 152 (333)
.+..+++.+.|.-.+-.+|.+.|-
T Consensus 351 -----------------~Nm~al~~g~p~~~~l~~iL~~f~ 374 (514)
T 2inr_A 351 -----------------FNMVAISDGRPKLMGIRQIIDSYL 374 (514)
T ss_dssp -----------------EECEEEETTEEEECCHHHHHHHHH
T ss_pred -----------------eeEEEeeCCEEEECCHHHHHHHHH
Confidence 122344666676667777666554
No 428
>2qyc_A Ferredoxin-like protein; stress responsive A/B barrel domain, structural genomics, JO center for structural genomics, JCSG; HET: MSE; 1.90A {Bordetella bronchiseptica RB50}
Probab=20.65 E-value=1.9e+02 Score=19.03 Aligned_cols=56 Identities=13% Similarity=0.145 Sum_probs=36.8
Q ss_pred ceEEEeCCCCCCCHHHHHHHH-------hcCCCeeEEEEeeCCCCCcccE---EEEEeCCHHHHHHH
Q psy8956 35 NELHVNNLEPSVDNQALINEF-------KKFGTLRDVRVARNKNDESRGF---AIIVFNTPAEAKKA 91 (333)
Q Consensus 35 ~~l~V~nLp~~~t~~~l~~~f-------~~~g~v~~v~i~~~~~~~~~g~---a~v~f~~~e~A~~a 91 (333)
+.|+++ |...++++++.++. .....|.++.+-.+..+.+.|| .+++|.+.++-...
T Consensus 7 HiVlfk-~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~F~s~e~l~~Y 72 (103)
T 2qyc_A 7 HVVMME-FDDGIDAGFFRTVDEYVARMKRECDGLLLYHFGENVAARSQGYTHATSSAFVDAAAHDAY 72 (103)
T ss_dssp EEEEEE-ECTTCCHHHHHHHHHHHHHHHHHSTTEEEEEEEECCCTTCTTCCEEEEEEESSHHHHHHH
T ss_pred EEEEEE-ECCCCCHHHHHHHHHHHHHhhhcCCCeEEEEECCCCCCCCCCccEEEEEEECCHHHHHHH
Confidence 456665 88888877765553 2356788888877765443444 56678888877643
Done!