Your job contains 1 sequence.
>psy8956
MKSKGKILEASWDEGISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGT
LRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKP
VGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFS
YKAAEKAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNI
NNSEFEELFARFGTITSSSLVSDKHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSG
TKPGVSITNPTKAPKKPAYIDEVKNVIGIKVQY
The BLAST search returned 7 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy8956
(333 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|H0Y5F5 - symbol:PABPC4 "Polyadenylate-binding p... 406 7.0e-38 1
UNIPROTKB|B1ANR0 - symbol:PABPC4 "Polyadenylate-binding p... 406 1.3e-37 1
UNIPROTKB|Q13310 - symbol:PABPC4 "Polyadenylate-binding p... 406 2.0e-37 1
UNIPROTKB|D4AC21 - symbol:Pabpc4 "Protein Pabpc4" species... 399 5.4e-37 1
UNIPROTKB|E2R9I0 - symbol:PABPC4 "Uncharacterized protein... 401 6.2e-37 1
UNIPROTKB|F1SV06 - symbol:PABPC4 "Uncharacterized protein... 401 6.2e-37 1
UNIPROTKB|A4IFC3 - symbol:PABPC4 "Uncharacterized protein... 400 9.3e-37 1
UNIPROTKB|D4AC14 - symbol:Pabpc4 "Protein Pabpc4" species... 399 1.0e-36 1
UNIPROTKB|E2R9I1 - symbol:PABPC4 "Uncharacterized protein... 401 1.1e-36 1
UNIPROTKB|G3V9N0 - symbol:Pabpc4 "RCG31475, isoform CRA_a... 399 1.4e-36 1
UNIPROTKB|F1NH81 - symbol:PABPC1 "Uncharacterized protein... 393 2.0e-36 1
UNIPROTKB|E7EQV3 - symbol:PABPC1 "Polyadenylate-binding p... 393 2.9e-36 1
ZFIN|ZDB-GENE-050308-1 - symbol:pabpc1b "poly A binding p... 395 3.0e-36 1
RGD|1563142 - symbol:Pabpc1l "poly(A) binding protein, cy... 392 4.8e-36 1
MGI|MGI:1349722 - symbol:Pabpc1 "poly(A) binding protein,... 393 5.2e-36 1
RGD|619838 - symbol:Pabpc1 "poly(A) binding protein, cyto... 393 5.2e-36 1
UNIPROTKB|P61286 - symbol:PABPC1 "Polyadenylate-binding p... 393 5.2e-36 1
UNIPROTKB|J9P326 - symbol:PABPC1 "Uncharacterized protein... 393 5.2e-36 1
UNIPROTKB|P11940 - symbol:PABPC1 "Polyadenylate-binding p... 393 5.2e-36 1
UNIPROTKB|F2Z557 - symbol:PABPC1 "Uncharacterized protein... 393 5.2e-36 1
UNIPROTKB|Q5R8F7 - symbol:PABPC1 "Polyadenylate-binding p... 393 5.2e-36 1
UNIPROTKB|I3LS00 - symbol:PABPC1 "Uncharacterized protein... 393 5.7e-36 1
UNIPROTKB|E1C903 - symbol:PABPC4 "Uncharacterized protein... 389 1.4e-35 1
UNIPROTKB|P20965 - symbol:pabpc1-a "Polyadenylate-binding... 387 2.3e-35 1
ZFIN|ZDB-GENE-030131-3238 - symbol:pabpc1a "poly A bindin... 383 6.5e-35 1
UNIPROTKB|Q9H361 - symbol:PABPC3 "Polyadenylate-binding p... 382 8.3e-35 1
UNIPROTKB|E2RND1 - symbol:PABPC1L "Uncharacterized protei... 378 2.5e-34 1
UNIPROTKB|E1BNB4 - symbol:PABPC1L "Uncharacterized protei... 377 2.6e-34 1
ZFIN|ZDB-GENE-030131-9663 - symbol:pabpc4 "poly(A) bindin... 377 3.1e-34 1
UNIPROTKB|Q6IP09 - symbol:pabpc1-b "Polyadenylate-binding... 375 5.0e-34 1
ZFIN|ZDB-GENE-030131-5836 - symbol:pabpc1l "poly(A) bindi... 373 7.5e-34 1
UNIPROTKB|Q6DEY7 - symbol:epabp "Embryonic polyadenylate-... 372 1.0e-33 1
UNIPROTKB|Q6GR16 - symbol:epabp-b "Embryonic polyadenylat... 372 1.0e-33 1
UNIPROTKB|Q98SP8 - symbol:epabp-a "Embryonic polyadenylat... 371 1.4e-33 1
RGD|1310759 - symbol:Pabpc2 "poly(A) binding protein, cyt... 371 1.4e-33 1
UNIPROTKB|Q96DU9 - symbol:PABPC5 "Polyadenylate-binding p... 364 2.0e-33 1
UNIPROTKB|E1BWJ7 - symbol:PABPC1L "Uncharacterized protei... 367 3.8e-33 1
UNIPROTKB|F1SDR6 - symbol:PABPC1L "Uncharacterized protei... 366 4.0e-33 1
UNIPROTKB|F1N4Q4 - symbol:PABPC5 "Uncharacterized protein... 358 8.5e-33 1
UNIPROTKB|Q4VXU2 - symbol:PABPC1L "Polyadenylate-binding ... 362 1.2e-32 1
UNIPROTKB|J3KTH5 - symbol:PABPC4L "Polyadenylate-binding ... 355 1.8e-32 1
UNIPROTKB|P0CB38 - symbol:PABPC4L "Polyadenylate-binding ... 355 1.8e-32 1
TAIR|locus:2124261 - symbol:PAB2 "AT4G34110" species:3702... 352 1.7e-31 1
RGD|2322083 - symbol:LOC100360473 "poly A binding protein... 344 2.6e-31 1
UNIPROTKB|F1PQV8 - symbol:PABPC5 "Uncharacterized protein... 344 2.6e-31 1
TAIR|locus:2012161 - symbol:PAB8 "AT1G49760" species:3702... 349 4.5e-31 1
RGD|1559517 - symbol:Pabpc4l "poly(A) binding protein, cy... 341 5.4e-31 1
DICTYBASE|DDB_G0293558 - symbol:pabpc1A "polyadenylate bi... 344 7.6e-31 1
CGD|CAL0001392 - symbol:orf19.3037 species:5476 "Candida ... 345 9.8e-31 1
ASPGD|ASPL0000010999 - symbol:fabM species:162425 "Emeric... 304 3.1e-30 2
UNIPROTKB|E7ERJ7 - symbol:PABPC1 "Polyadenylate-binding p... 338 4.9e-30 1
WB|WBGene00003903 - symbol:pab-2 species:6239 "Caenorhabd... 339 6.1e-30 1
UNIPROTKB|H3BNY3 - symbol:PABPC3 "Polyadenylate-binding p... 331 6.2e-30 1
UNIPROTKB|A4QUF0 - symbol:PAB1 "Polyadenylate-binding pro... 323 6.4e-30 2
TAIR|locus:2009036 - symbol:PAB1 "poly(A) binding protein... 324 3.4e-29 1
POMBASE|SPAC57A7.04c - symbol:pabp "mRNA export shuttling... 331 3.8e-29 1
UNIPROTKB|E2RQC8 - symbol:PABPC1 "Uncharacterized protein... 328 5.8e-29 1
WB|WBGene00003902 - symbol:pab-1 species:6239 "Caenorhabd... 314 6.7e-29 2
TAIR|locus:2058573 - symbol:PAB4 "AT2G23350" species:3702... 328 8.4e-29 1
SGD|S000000967 - symbol:PAB1 "Poly(A) binding protein" sp... 325 1.1e-28 1
TAIR|locus:2199700 - symbol:PAB3 "poly(A) binding protein... 324 2.3e-28 1
UNIPROTKB|H0YAR2 - symbol:PABPC1 "Polyadenylate-binding p... 315 3.1e-28 1
UNIPROTKB|Q4VY17 - symbol:PABPC1L "EPAB" species:9606 "Ho... 313 5.0e-28 1
RGD|1311201 - symbol:Pabpc6 "poly(A) binding protein, cyt... 303 1.0e-27 2
UNIPROTKB|H0YBQ4 - symbol:PABPC1 "Polyadenylate-binding p... 289 1.8e-25 1
UNIPROTKB|F1NH82 - symbol:F1NH82 "Uncharacterized protein... 289 4.0e-25 1
UNIPROTKB|Q5JQF3 - symbol:PABPC5 "Polyadenylate-binding p... 281 1.2e-24 1
TAIR|locus:2040625 - symbol:PAB7 "poly(A) binding protein... 288 1.5e-24 1
TAIR|locus:2094922 - symbol:PAB6 "poly(A) binding protein... 283 3.5e-24 1
UNIPROTKB|H3BPI5 - symbol:PABPC3 "Polyadenylate-binding p... 271 1.4e-23 1
RGD|1566367 - symbol:Pabpc1l2a "poly(A) binding protein, ... 248 3.9e-21 1
UNIPROTKB|H0YCC8 - symbol:PABPC4 "Polyadenylate-binding p... 247 4.9e-21 1
UNIPROTKB|G3MZ94 - symbol:PABPC1L2A "Uncharacterized prot... 247 4.9e-21 1
UNIPROTKB|F1RPL9 - symbol:LOC100623240 "Uncharacterized p... 247 4.9e-21 1
UNIPROTKB|Q5JQF8 - symbol:PABPC1L2A "Polyadenylate-bindin... 246 6.3e-21 1
UNIPROTKB|G3MYW4 - symbol:PABPC1L2A "Uncharacterized prot... 245 8.0e-21 1
FB|FBgn0035016 - symbol:CG4612 species:7227 "Drosophila m... 227 6.5e-19 1
DICTYBASE|DDB_G0274523 - symbol:DDB_G0274523 "RNA recogni... 195 1.0e-18 2
DICTYBASE|DDB_G0270634 - symbol:DDB_G0270634 "putative sp... 170 1.7e-18 2
GENEDB_PFALCIPARUM|PFL1170w - symbol:PFL1170w "polyadenyl... 230 5.3e-18 1
UNIPROTKB|Q8I5H4 - symbol:PFL1170w "Polyadenylate-binding... 230 5.3e-18 1
WB|WBGene00012904 - symbol:tiar-2 species:6239 "Caenorhab... 203 7.3e-18 2
ZFIN|ZDB-GENE-040426-960 - symbol:rbm28 "RNA binding moti... 214 5.6e-17 3
DICTYBASE|DDB_G0292472 - symbol:DDB_G0292472 species:4468... 150 5.7e-17 3
WB|WBGene00015943 - symbol:tiar-1 species:6239 "Caenorhab... 221 7.3e-17 1
UNIPROTKB|D4A6U8 - symbol:Tia1 "Protein Tia1" species:101... 220 8.0e-17 1
MGI|MGI:2387367 - symbol:Rbm45 "RNA binding motif protein... 157 1.3e-16 2
ASPGD|ASPL0000061196 - symbol:AN10164 species:162425 "Eme... 174 1.3e-16 2
MGI|MGI:107914 - symbol:Tia1 "cytotoxic granule-associate... 218 1.9e-16 1
DICTYBASE|DDB_G0290745 - symbol:pabpc1B "putative polyade... 222 2.4e-16 1
RGD|628862 - symbol:Rbm45 "RNA binding motif protein 45" ... 159 2.5e-16 2
UNIPROTKB|Q8CFD1 - symbol:Rbm45 "RNA-binding protein 45" ... 159 2.5e-16 2
UNIPROTKB|P31483 - symbol:TIA1 "Nucleolysin TIA-1 isoform... 216 4.0e-16 1
UNIPROTKB|F8W8I6 - symbol:TIA1 "Nucleolysin TIA-1 isoform... 214 7.4e-16 1
UNIPROTKB|H0YBN4 - symbol:PABPC1 "Polyadenylate-binding p... 155 1.1e-15 2
UNIPROTKB|Q0VBZ6 - symbol:TIA1 "TIA1 cytotoxic granule-as... 213 1.1e-15 1
UNIPROTKB|F1PWU8 - symbol:TIA1 "Uncharacterized protein" ... 213 1.2e-15 1
UNIPROTKB|H0YEQ8 - symbol:PABPC4 "Polyadenylate-binding p... 196 1.6e-15 1
RGD|1305742 - symbol:Tia1 "TIA1 cytotoxic granule-associa... 211 1.8e-15 1
UNIPROTKB|Q8IUH3 - symbol:RBM45 "RNA-binding protein 45" ... 159 2.1e-15 2
WARNING: Descriptions of 1065 database sequences were not reported due to the
limiting value of parameter V = 100.
>UNIPROTKB|H0Y5F5 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL365277 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000421687 Uniprot:H0Y5F5
Length = 550
Score = 406 (148.0 bits), Expect = 7.0e-38, P = 7.0e-38
Identities = 96/274 (35%), Positives = 152/274 (55%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+DN+AL + F FG + +V ++N S+G+A + F T A KA +MNG
Sbjct: 5 IKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGM 63
Query: 99 LIGSKPVII-TFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNI 157
L+ + V + F K +R +G + K++ V++KN E VD+E LK F +FG
Sbjct: 64 LLNDRKVFVGRFKSRK--EREAELGAKAKEFTN--VYIKNFGEEVDDESLKELFSQFGKT 119
Query: 158 IEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXXXX 217
+ VK++RD NGKSKGFGF+ + ++ A KA+ EMNG+ I FV A+
Sbjct: 120 LSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELK 179
Query: 218 XXXXLLQPARKNK-----IFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGF 268
L+ R ++ +++ NL I++ + + F+ FG+ITS+ ++ + K GF
Sbjct: 180 RKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGF 239
Query: 269 IEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
+ F P+ AT AV+ MNG + SKPL V L+ K
Sbjct: 240 VCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRK 273
Score = 273 (101.2 bits), Expect = 4.7e-23, P = 4.7e-23
Identities = 60/179 (33%), Positives = 105/179 (58%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+++ N VD+++L F +FG V+V R+ N +S+GF + + +A KA EMN
Sbjct: 95 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMN 154
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKV--------FVKNLVETVDEEELK 148
G I K + + + K +R + + +Q K++++ ++KNL +T+D+E+L+
Sbjct: 155 GKEISGKIIFVGRAQKKV-ERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 213
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
F FG+I K++ E+G+SKGFGF+ F S + A KA+ EMNGR++ +V+LA+
Sbjct: 214 KEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 271
Score = 214 (80.4 bits), Expect = 2.0e-15, P = 2.0e-15
Identities = 53/166 (31%), Positives = 85/166 (51%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMN 192
VF+KNL +++D + L F FGNI+ K+V DENG SKG+ F+ F + +AA+KAI +MN
Sbjct: 3 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 61
Query: 193 GRMIQHNSTFVSLAEIXXXXXXXXXXXXXLLQPARK-NKIFVANLPSNINNSEFEELFAR 251
G ++ FV + L A++ +++ N +++ +ELF++
Sbjct: 62 GMLLNDRKVFVGRFK------SRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQ 115
Query: 252 FGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSK 292
FG S ++ D K GF+ + + A AV MNG K
Sbjct: 116 FGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGK 161
Score = 158 (60.7 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 28/82 (34%), Positives = 52/82 (63%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L++ NL+ ++D++ L EF FG++ +V ++ S+GF + F++P EA KA EMN
Sbjct: 198 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMN 256
Query: 97 GHLIGSKPVIITFVELKPGQRS 118
G ++GSKP+ + + K +++
Sbjct: 257 GRIVGSKPLYVALAQRKEERKA 278
>UNIPROTKB|B1ANR0 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0000166
EMBL:CH471059 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL365277
HOVERGEN:HBG002295 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AL845289
UniGene:Hs.169900 HGNC:HGNC:8557 ChiTaRS:PABPC4 IPI:IPI00642944
SMR:B1ANR0 STRING:B1ANR0 Ensembl:ENST00000372862 Uniprot:B1ANR0
Length = 615
Score = 406 (148.0 bits), Expect = 1.3e-37, P = 1.3e-37
Identities = 96/274 (35%), Positives = 152/274 (55%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+DN+AL + F FG + +V ++N S+G+A + F T A KA +MNG
Sbjct: 103 IKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGM 161
Query: 99 LIGSKPVII-TFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNI 157
L+ + V + F K +R +G + K++ V++KN E VD+E LK F +FG
Sbjct: 162 LLNDRKVFVGRFKSRK--EREAELGAKAKEFTN--VYIKNFGEEVDDESLKELFSQFGKT 217
Query: 158 IEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXXXX 217
+ VK++RD NGKSKGFGF+ + ++ A KA+ EMNG+ I FV A+
Sbjct: 218 LSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELK 277
Query: 218 XXXXLLQPARKNK-----IFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGF 268
L+ R ++ +++ NL I++ + + F+ FG+ITS+ ++ + K GF
Sbjct: 278 RKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGF 337
Query: 269 IEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
+ F P+ AT AV+ MNG + SKPL V L+ K
Sbjct: 338 VCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRK 371
Score = 299 (110.3 bits), Expect = 9.6e-26, P = 9.6e-26
Identities = 81/263 (30%), Positives = 128/263 (48%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L V L +F G + +RV R+ S G+A + F PA+A++A M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N +I KP+ I + + P R VG VF+KNL +++D + L F FG
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKSIDNKALYDTFSAFG 123
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXX 215
NI+ K+V DENG SKG+ F+ F + +AA+KAI +MNG ++ FV +
Sbjct: 124 NILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFK------SR 176
Query: 216 XXXXXXLLQPARK-NKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFI 269
L A++ +++ N +++ +ELF++FG S ++ D K GF+
Sbjct: 177 KEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFV 236
Query: 270 EFIMPKHATHAVSTMNGHVFKSK 292
+ + A AV MNG K
Sbjct: 237 SYEKHEDANKAVEEMNGKEISGK 259
Score = 273 (101.2 bits), Expect = 6.4e-23, P = 6.4e-23
Identities = 60/179 (33%), Positives = 105/179 (58%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+++ N VD+++L F +FG V+V R+ N +S+GF + + +A KA EMN
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKV--------FVKNLVETVDEEELK 148
G I K + + + K +R + + +Q K++++ ++KNL +T+D+E+L+
Sbjct: 253 GKEISGKIIFVGRAQKKV-ERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
F FG+I K++ E+G+SKGFGF+ F S + A KA+ EMNGR++ +V+LA+
Sbjct: 312 KEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Score = 158 (60.7 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 28/82 (34%), Positives = 52/82 (63%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L++ NL+ ++D++ L EF FG++ +V ++ S+GF + F++P EA KA EMN
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMN 354
Query: 97 GHLIGSKPVIITFVELKPGQRS 118
G ++GSKP+ + + K +++
Sbjct: 355 GRIVGSKPLYVALAQRKEERKA 376
>UNIPROTKB|Q13310 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0017130 "poly(C) RNA
binding" evidence=IDA] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0006412 "translation" evidence=TAS] [GO:0007596 "blood
coagulation" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 EMBL:CH471059
GO:GO:0006412 GO:GO:0007596 Gene3D:3.30.70.330 GO:GO:0006401
GO:GO:0006396 GO:GO:0010494 EMBL:AL365277 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:U33818
EMBL:U75686 EMBL:AL845289 EMBL:BC065540 EMBL:BC094755
IPI:IPI00012726 IPI:IPI00555747 IPI:IPI00642904
RefSeq:NP_001129125.1 RefSeq:NP_001129126.1 RefSeq:NP_003810.1
UniGene:Hs.169900 ProteinModelPortal:Q13310 SMR:Q13310
IntAct:Q13310 MINT:MINT-1189867 STRING:Q13310 PhosphoSite:Q13310
DMDM:12229875 PaxDb:Q13310 PRIDE:Q13310 Ensembl:ENST00000372856
Ensembl:ENST00000372857 Ensembl:ENST00000372858 GeneID:8761
KEGG:hsa:8761 UCSC:uc001cdm.2 UCSC:uc010oiv.1 CTD:8761
GeneCards:GC01M040026 HGNC:HGNC:8557 HPA:HPA027301 MIM:603407
neXtProt:NX_Q13310 PharmGKB:PA32883 OMA:XVVCDEN OrthoDB:EOG4T1HM1
PhylomeDB:Q13310 ChEMBL:CHEMBL5333 ChiTaRS:PABPC4 GenomeRNAi:8761
NextBio:32864 ArrayExpress:Q13310 Bgee:Q13310 CleanEx:HS_PABPC4
Genevestigator:Q13310 GermOnline:ENSG00000090621 Uniprot:Q13310
Length = 644
Score = 406 (148.0 bits), Expect = 2.0e-37, P = 2.0e-37
Identities = 96/274 (35%), Positives = 152/274 (55%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+DN+AL + F FG + +V ++N S+G+A + F T A KA +MNG
Sbjct: 103 IKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGM 161
Query: 99 LIGSKPVII-TFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNI 157
L+ + V + F K +R +G + K++ V++KN E VD+E LK F +FG
Sbjct: 162 LLNDRKVFVGRFKSRK--EREAELGAKAKEFTN--VYIKNFGEEVDDESLKELFSQFGKT 217
Query: 158 IEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXXXX 217
+ VK++RD NGKSKGFGF+ + ++ A KA+ EMNG+ I FV A+
Sbjct: 218 LSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELK 277
Query: 218 XXXXLLQPARKNK-----IFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGF 268
L+ R ++ +++ NL I++ + + F+ FG+ITS+ ++ + K GF
Sbjct: 278 RKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGF 337
Query: 269 IEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
+ F P+ AT AV+ MNG + SKPL V L+ K
Sbjct: 338 VCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRK 371
Score = 299 (110.3 bits), Expect = 1.1e-25, P = 1.1e-25
Identities = 81/263 (30%), Positives = 128/263 (48%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L V L +F G + +RV R+ S G+A + F PA+A++A M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N +I KP+ I + + P R VG VF+KNL +++D + L F FG
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKSIDNKALYDTFSAFG 123
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXX 215
NI+ K+V DENG SKG+ F+ F + +AA+KAI +MNG ++ FV +
Sbjct: 124 NILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFK------SR 176
Query: 216 XXXXXXLLQPARK-NKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFI 269
L A++ +++ N +++ +ELF++FG S ++ D K GF+
Sbjct: 177 KEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFV 236
Query: 270 EFIMPKHATHAVSTMNGHVFKSK 292
+ + A AV MNG K
Sbjct: 237 SYEKHEDANKAVEEMNGKEISGK 259
Score = 273 (101.2 bits), Expect = 7.1e-23, P = 7.1e-23
Identities = 60/179 (33%), Positives = 105/179 (58%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+++ N VD+++L F +FG V+V R+ N +S+GF + + +A KA EMN
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKV--------FVKNLVETVDEEELK 148
G I K + + + K +R + + +Q K++++ ++KNL +T+D+E+L+
Sbjct: 253 GKEISGKIIFVGRAQKKV-ERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
F FG+I K++ E+G+SKGFGF+ F S + A KA+ EMNGR++ +V+LA+
Sbjct: 312 KEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Score = 158 (60.7 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 28/82 (34%), Positives = 52/82 (63%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L++ NL+ ++D++ L EF FG++ +V ++ S+GF + F++P EA KA EMN
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMN 354
Query: 97 GHLIGSKPVIITFVELKPGQRS 118
G ++GSKP+ + + K +++
Sbjct: 355 GRIVGSKPLYVALAQRKEERKA 376
>UNIPROTKB|D4AC21 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00365233
ProteinModelPortal:D4AC21 Ensembl:ENSRNOT00000021032
ArrayExpress:D4AC21 Uniprot:D4AC21
Length = 588
Score = 399 (145.5 bits), Expect = 5.4e-37, P = 5.4e-37
Identities = 94/274 (34%), Positives = 153/274 (55%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+DN+AL + F FG + +V ++N S+G+A + F T A KA +MNG
Sbjct: 32 IKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAANKAIEKMNGM 90
Query: 99 LIGSKPVII-TFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNI 157
L+ + V + F K +R +G + K++ V++KN E VD+E L+ F +FG
Sbjct: 91 LLNDRKVFVGRFKSRK--EREAELGAKAKEFTN--VYIKNFGEEVDDENLRELFSQFGKT 146
Query: 158 IEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXXXX 217
+ VK++RD +GKSKGFGF+ + ++ A KA+ EMNG+ + S FV A+
Sbjct: 147 LSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELK 206
Query: 218 XXXXLLQPARKNK-----IFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGF 268
L+ R ++ +++ NL I++ + + F+ FG+ITS+ ++ + K GF
Sbjct: 207 RKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGF 266
Query: 269 IEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
+ F P+ AT AV+ MNG + SKPL V L+ K
Sbjct: 267 VCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRK 300
Score = 262 (97.3 bits), Expect = 8.8e-22, P = 8.8e-22
Identities = 58/179 (32%), Positives = 104/179 (58%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+++ N VD++ L F +FG V+V R+ + +S+GF + + +A KA EMN
Sbjct: 122 VYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMN 181
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKV--------FVKNLVETVDEEELK 148
G + K + + + K +R + + +Q K++++ ++KNL +T+D+E+L+
Sbjct: 182 GKEMSGKSIFVGRAQKKV-ERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 240
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
F FG+I K++ E+G+SKGFGF+ F S + A KA+ EMNGR++ +V+LA+
Sbjct: 241 KEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 298
Score = 229 (85.7 bits), Expect = 3.3e-18, P = 3.3e-18
Identities = 64/208 (30%), Positives = 99/208 (47%)
Query: 95 MNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKF 154
MN +I KP+ I + + P R VG VF+KNL +++D + L F F
Sbjct: 1 MNFDVIKGKPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKSIDNKALYDTFSAF 51
Query: 155 GNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXX 214
GNI+ K+V DENG SKG+ F+ F + +AA KAI +MNG ++ FV +
Sbjct: 52 GNILSCKVVCDENG-SKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFK------S 104
Query: 215 XXXXXXXLLQPARK-NKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGF 268
L A++ +++ N +++ ELF++FG S ++ D K GF
Sbjct: 105 RKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGF 164
Query: 269 IEFIMPKHATHAVSTMNGHVFKSKPLKV 296
+ + + A AV MNG K + V
Sbjct: 165 VSYEKHEDANKAVEEMNGKEMSGKSIFV 192
Score = 158 (60.7 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 28/82 (34%), Positives = 52/82 (63%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L++ NL+ ++D++ L EF FG++ +V ++ S+GF + F++P EA KA EMN
Sbjct: 225 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMN 283
Query: 97 GHLIGSKPVIITFVELKPGQRS 118
G ++GSKP+ + + K +++
Sbjct: 284 GRIVGSKPLYVALAQRKEERKA 305
>UNIPROTKB|E2R9I0 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0008266 "poly(U) RNA binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0010494 GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:AAEX03009572 ProteinModelPortal:E2R9I0
Ensembl:ENSCAFT00000004950 Uniprot:E2R9I0
Length = 631
Score = 401 (146.2 bits), Expect = 6.2e-37, P = 6.2e-37
Identities = 95/274 (34%), Positives = 152/274 (55%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+DN+AL + F FG + +V ++N S+G+A + F T A KA +MNG
Sbjct: 103 IKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGM 161
Query: 99 LIGSKPVII-TFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNI 157
L+ + V + F K +R +G + K++ V++KN E VD+E LK F +FG
Sbjct: 162 LLNDRKVFVGRFKSRK--EREAELGAKAKEFTN--VYIKNFGEEVDDESLKELFSQFGKT 217
Query: 158 IEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXXXX 217
+ VK++RD +GKSKGFGF+ + ++ A KA+ EMNG+ I FV A+
Sbjct: 218 LSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELK 277
Query: 218 XXXXLLQPARKNK-----IFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGF 268
L+ R ++ +++ NL I++ + + F+ FG+ITS+ ++ + K GF
Sbjct: 278 RKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGF 337
Query: 269 IEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
+ F P+ AT AV+ MNG + SKPL V L+ K
Sbjct: 338 VCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRK 371
Score = 300 (110.7 bits), Expect = 8.0e-26, P = 8.0e-26
Identities = 82/267 (30%), Positives = 130/267 (48%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L V L +F G + +RV R+ S G+A + F PA+A++A M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N +I KP+ I + + P R VG VF+KNL +++D + L F FG
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKSIDNKALYDTFSAFG 123
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXX 215
NI+ K+V DENG SKG+ F+ F + +AA+KAI +MNG ++ FV +
Sbjct: 124 NILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFK------SR 176
Query: 216 XXXXXXLLQPARK-NKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFI 269
L A++ +++ N +++ +ELF++FG S ++ D K GF+
Sbjct: 177 KEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFV 236
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKV 296
+ + A AV MNG K + V
Sbjct: 237 SYEKHEDANKAVEEMNGKEISGKVIFV 263
Score = 269 (99.8 bits), Expect = 1.8e-22, P = 1.8e-22
Identities = 59/179 (32%), Positives = 105/179 (58%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+++ N VD+++L F +FG V+V R+ + +S+GF + + +A KA EMN
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKV--------FVKNLVETVDEEELK 148
G I K + + + K +R + + +Q K++++ ++KNL +T+D+E+L+
Sbjct: 253 GKEISGKVIFVGRAQKKV-ERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
F FG+I K++ E+G+SKGFGF+ F S + A KA+ EMNGR++ +V+LA+
Sbjct: 312 KEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Score = 158 (60.7 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 28/82 (34%), Positives = 52/82 (63%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L++ NL+ ++D++ L EF FG++ +V ++ S+GF + F++P EA KA EMN
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMN 354
Query: 97 GHLIGSKPVIITFVELKPGQRS 118
G ++GSKP+ + + K +++
Sbjct: 355 GRIVGSKPLYVALAQRKEERKA 376
>UNIPROTKB|F1SV06 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:CR956622 Ensembl:ENSSSCT00000004056 Uniprot:F1SV06
Length = 631
Score = 401 (146.2 bits), Expect = 6.2e-37, P = 6.2e-37
Identities = 95/274 (34%), Positives = 152/274 (55%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+DN+AL + F FG + +V ++N S+G+A + F T A KA +MNG
Sbjct: 103 IKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGM 161
Query: 99 LIGSKPVII-TFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNI 157
L+ + V + F K +R +G + K++ V++KN E VD+E LK F +FG
Sbjct: 162 LLNDRKVFVGRFKSRK--EREAELGAKAKEFTN--VYIKNFGEEVDDENLKELFSQFGKT 217
Query: 158 IEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXXXX 217
+ VK++RD +GKSKGFGF+ + ++ A KA+ EMNG+ I FV A+
Sbjct: 218 LSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELK 277
Query: 218 XXXXLLQPARKNK-----IFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGF 268
L+ R ++ +++ NL I++ + + F+ FG+ITS+ ++ + K GF
Sbjct: 278 RKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGF 337
Query: 269 IEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
+ F P+ AT AV+ MNG + SKPL V L+ K
Sbjct: 338 VCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRK 371
Score = 300 (110.7 bits), Expect = 8.0e-26, P = 8.0e-26
Identities = 82/267 (30%), Positives = 130/267 (48%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L V L +F G + +RV R+ S G+A + F PA+A++A M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N +I KP+ I + + P R VG VF+KNL +++D + L F FG
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKSIDNKALYDTFSAFG 123
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXX 215
NI+ K+V DENG SKG+ F+ F + +AA+KAI +MNG ++ FV +
Sbjct: 124 NILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFK------SR 176
Query: 216 XXXXXXLLQPARK-NKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFI 269
L A++ +++ N +++ +ELF++FG S ++ D K GF+
Sbjct: 177 KEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFV 236
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKV 296
+ + A AV MNG K + V
Sbjct: 237 SYEKHEDANKAVEEMNGKEISGKVIFV 263
Score = 266 (98.7 bits), Expect = 3.9e-22, P = 3.9e-22
Identities = 59/179 (32%), Positives = 104/179 (58%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+++ N VD++ L F +FG V+V R+ + +S+GF + + +A KA EMN
Sbjct: 193 VYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKV--------FVKNLVETVDEEELK 148
G I K + + + K +R + + +Q K++++ ++KNL +T+D+E+L+
Sbjct: 253 GKEISGKVIFVGRAQKKV-ERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
F FG+I K++ E+G+SKGFGF+ F S + A KA+ EMNGR++ +V+LA+
Sbjct: 312 KEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Score = 158 (60.7 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 28/82 (34%), Positives = 52/82 (63%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L++ NL+ ++D++ L EF FG++ +V ++ S+GF + F++P EA KA EMN
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMN 354
Query: 97 GHLIGSKPVIITFVELKPGQRS 118
G ++GSKP+ + + K +++
Sbjct: 355 GRIVGSKPLYVALAQRKEERKA 376
>UNIPROTKB|A4IFC3 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 GeneTree:ENSGT00640000091232 CTD:8761
OMA:XVVCDEN OrthoDB:EOG4T1HM1 EMBL:DAAA02009142 EMBL:BC134509
IPI:IPI00689745 RefSeq:NP_001077193.1 UniGene:Bt.11192 SMR:A4IFC3
Ensembl:ENSBTAT00000022761 GeneID:534576 KEGG:bta:534576
InParanoid:A4IFC3 NextBio:20876450 Uniprot:A4IFC3
Length = 645
Score = 400 (145.9 bits), Expect = 9.3e-37, P = 9.3e-37
Identities = 95/274 (34%), Positives = 152/274 (55%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+DN+AL + F FG + +V ++N S+G+A + F T A KA +MNG
Sbjct: 103 IKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGM 161
Query: 99 LIGSKPVII-TFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNI 157
L+ + V + F K +R +G + K++ V++KN E VD+E LK F +FG
Sbjct: 162 LLNDRKVFVGRFKSRK--EREAELGAKAKEFTN--VYIKNFGEEVDDENLKELFSQFGKT 217
Query: 158 IEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXXXX 217
+ VK++RD +GKSKGFGF+ + ++ A KA+ EMNG+ I FV A+
Sbjct: 218 LSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRAQKKVERQAELK 277
Query: 218 XXXXLLQPARKNK-----IFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGF 268
L+ R ++ +++ NL I++ + + F+ FG+ITS+ ++ + K GF
Sbjct: 278 RKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGF 337
Query: 269 IEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
+ F P+ AT AV+ MNG + SKPL V L+ K
Sbjct: 338 VCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRK 371
Score = 299 (110.3 bits), Expect = 1.1e-25, P = 1.1e-25
Identities = 82/267 (30%), Positives = 130/267 (48%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L V L +F G + +RV R+ S G+A + F PA+A++A M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N +I KP+ I + + P R VG VF+KNL +++D + L F FG
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKSIDNKALYDTFSAFG 123
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXX 215
NI+ K+V DENG SKG+ F+ F + +AA+KAI +MNG ++ FV +
Sbjct: 124 NILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFK------SR 176
Query: 216 XXXXXXLLQPARK-NKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFI 269
L A++ +++ N +++ +ELF++FG S ++ D K GF+
Sbjct: 177 KEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFV 236
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKV 296
+ + A AV MNG K + V
Sbjct: 237 SYEKHEDANKAVEEMNGKEITGKVIFV 263
Score = 264 (98.0 bits), Expect = 6.7e-22, P = 6.7e-22
Identities = 59/179 (32%), Positives = 104/179 (58%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+++ N VD++ L F +FG V+V R+ + +S+GF + + +A KA EMN
Sbjct: 193 VYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKV--------FVKNLVETVDEEELK 148
G I K + + + K +R + + +Q K++++ ++KNL +T+D+E+L+
Sbjct: 253 GKEITGKVIFVGRAQKKV-ERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
F FG+I K++ E+G+SKGFGF+ F S + A KA+ EMNGR++ +V+LA+
Sbjct: 312 KEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Score = 158 (60.7 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 28/82 (34%), Positives = 52/82 (63%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L++ NL+ ++D++ L EF FG++ +V ++ S+GF + F++P EA KA EMN
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMN 354
Query: 97 GHLIGSKPVIITFVELKPGQRS 118
G ++GSKP+ + + K +++
Sbjct: 355 GRIVGSKPLYVALAQRKEERKA 376
>UNIPROTKB|D4AC14 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00204295 PRIDE:D4AC14
Ensembl:ENSRNOT00000021045 ArrayExpress:D4AC14 Uniprot:D4AC14
Length = 631
Score = 399 (145.5 bits), Expect = 1.0e-36, P = 1.0e-36
Identities = 94/274 (34%), Positives = 153/274 (55%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+DN+AL + F FG + +V ++N S+G+A + F T A KA +MNG
Sbjct: 103 IKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAANKAIEKMNGM 161
Query: 99 LIGSKPVII-TFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNI 157
L+ + V + F K +R +G + K++ V++KN E VD+E L+ F +FG
Sbjct: 162 LLNDRKVFVGRFKSRK--EREAELGAKAKEFTN--VYIKNFGEEVDDENLRELFSQFGKT 217
Query: 158 IEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXXXX 217
+ VK++RD +GKSKGFGF+ + ++ A KA+ EMNG+ + S FV A+
Sbjct: 218 LSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELK 277
Query: 218 XXXXLLQPARKNK-----IFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGF 268
L+ R ++ +++ NL I++ + + F+ FG+ITS+ ++ + K GF
Sbjct: 278 RKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGF 337
Query: 269 IEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
+ F P+ AT AV+ MNG + SKPL V L+ K
Sbjct: 338 VCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRK 371
Score = 298 (110.0 bits), Expect = 1.3e-25, P = 1.3e-25
Identities = 82/267 (30%), Positives = 128/267 (47%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L V L +F G + +RV R+ S G+A + F PA+A++A M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N +I KP+ I + + P R VG VF+KNL +++D + L F FG
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKSIDNKALYDTFSAFG 123
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXX 215
NI+ K+V DENG SKG+ F+ F + +AA KAI +MNG ++ FV +
Sbjct: 124 NILSCKVVCDENG-SKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFK------SR 176
Query: 216 XXXXXXLLQPARK-NKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFI 269
L A++ +++ N +++ ELF++FG S ++ D K GF+
Sbjct: 177 KEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFV 236
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKV 296
+ + A AV MNG K + V
Sbjct: 237 SYEKHEDANKAVEEMNGKEMSGKSIFV 263
Score = 262 (97.3 bits), Expect = 1.0e-21, P = 1.0e-21
Identities = 58/179 (32%), Positives = 104/179 (58%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+++ N VD++ L F +FG V+V R+ + +S+GF + + +A KA EMN
Sbjct: 193 VYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKV--------FVKNLVETVDEEELK 148
G + K + + + K +R + + +Q K++++ ++KNL +T+D+E+L+
Sbjct: 253 GKEMSGKSIFVGRAQKKV-ERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
F FG+I K++ E+G+SKGFGF+ F S + A KA+ EMNGR++ +V+LA+
Sbjct: 312 KEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Score = 158 (60.7 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 28/82 (34%), Positives = 52/82 (63%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L++ NL+ ++D++ L EF FG++ +V ++ S+GF + F++P EA KA EMN
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMN 354
Query: 97 GHLIGSKPVIITFVELKPGQRS 118
G ++GSKP+ + + K +++
Sbjct: 355 GRIVGSKPLYVALAQRKEERKA 376
>UNIPROTKB|E2R9I1 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR011598
InterPro:IPR012677 Pfam:PF00010 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS50888 PROSITE:PS51309 SMART:SM00353
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:4.10.280.10 SUPFAM:SSF47459
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 EMBL:AAEX03009572
Ensembl:ENSCAFT00000004949 Uniprot:E2R9I1
Length = 700
Score = 401 (146.2 bits), Expect = 1.1e-36, P = 1.1e-36
Identities = 95/274 (34%), Positives = 152/274 (55%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+DN+AL + F FG + +V ++N S+G+A + F T A KA +MNG
Sbjct: 143 IKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGM 201
Query: 99 LIGSKPVII-TFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNI 157
L+ + V + F K +R +G + K++ V++KN E VD+E LK F +FG
Sbjct: 202 LLNDRKVFVGRFKSRK--EREAELGAKAKEFTN--VYIKNFGEEVDDESLKELFSQFGKT 257
Query: 158 IEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXXXX 217
+ VK++RD +GKSKGFGF+ + ++ A KA+ EMNG+ I FV A+
Sbjct: 258 LSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELK 317
Query: 218 XXXXLLQPARKNK-----IFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGF 268
L+ R ++ +++ NL I++ + + F+ FG+ITS+ ++ + K GF
Sbjct: 318 RKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGF 377
Query: 269 IEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
+ F P+ AT AV+ MNG + SKPL V L+ K
Sbjct: 378 VCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRK 411
Score = 269 (99.8 bits), Expect = 2.3e-22, P = 2.3e-22
Identities = 59/179 (32%), Positives = 105/179 (58%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+++ N VD+++L F +FG V+V R+ + +S+GF + + +A KA EMN
Sbjct: 233 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 292
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKV--------FVKNLVETVDEEELK 148
G I K + + + K +R + + +Q K++++ ++KNL +T+D+E+L+
Sbjct: 293 GKEISGKVIFVGRAQKKV-ERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 351
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
F FG+I K++ E+G+SKGFGF+ F S + A KA+ EMNGR++ +V+LA+
Sbjct: 352 KEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 409
Score = 238 (88.8 bits), Expect = 5.0e-19, P = 5.0e-19
Identities = 67/219 (30%), Positives = 106/219 (48%)
Query: 84 TPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVD 143
T A++A MN +I KP+ I + + P R VG VF+KNL +++D
Sbjct: 101 TGGTAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKSID 151
Query: 144 EEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFV 203
+ L F FGNI+ K+V DENG SKG+ F+ F + +AA+KAI +MNG ++ FV
Sbjct: 152 NKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 210
Query: 204 SLAEIXXXXXXXXXXXXXLLQPARK-NKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
+ L A++ +++ N +++ +ELF++FG S ++
Sbjct: 211 GRFK------SRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMR 264
Query: 263 D-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
D K GF+ + + A AV MNG K + V
Sbjct: 265 DPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFV 303
Score = 158 (60.7 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 28/82 (34%), Positives = 52/82 (63%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L++ NL+ ++D++ L EF FG++ +V ++ S+GF + F++P EA KA EMN
Sbjct: 336 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMN 394
Query: 97 GHLIGSKPVIITFVELKPGQRS 118
G ++GSKP+ + + K +++
Sbjct: 395 GRIVGSKPLYVALAQRKEERKA 416
>UNIPROTKB|G3V9N0 [details] [associations]
symbol:Pabpc4 "RCG31475, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:CH473968 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 GeneTree:ENSGT00640000091232
OMA:XVVCDEN PRIDE:G3V9N0 Ensembl:ENSRNOT00000056592 Uniprot:G3V9N0
Length = 660
Score = 399 (145.5 bits), Expect = 1.4e-36, P = 1.4e-36
Identities = 94/274 (34%), Positives = 153/274 (55%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+DN+AL + F FG + +V ++N S+G+A + F T A KA +MNG
Sbjct: 103 IKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAANKAIEKMNGM 161
Query: 99 LIGSKPVII-TFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNI 157
L+ + V + F K +R +G + K++ V++KN E VD+E L+ F +FG
Sbjct: 162 LLNDRKVFVGRFKSRK--EREAELGAKAKEFTN--VYIKNFGEEVDDENLRELFSQFGKT 217
Query: 158 IEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXXXX 217
+ VK++RD +GKSKGFGF+ + ++ A KA+ EMNG+ + S FV A+
Sbjct: 218 LSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELK 277
Query: 218 XXXXLLQPARKNK-----IFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGF 268
L+ R ++ +++ NL I++ + + F+ FG+ITS+ ++ + K GF
Sbjct: 278 RKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGF 337
Query: 269 IEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
+ F P+ AT AV+ MNG + SKPL V L+ K
Sbjct: 338 VCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRK 371
Score = 298 (110.0 bits), Expect = 1.5e-25, P = 1.5e-25
Identities = 82/267 (30%), Positives = 128/267 (47%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L V L +F G + +RV R+ S G+A + F PA+A++A M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N +I KP+ I + + P R VG VF+KNL +++D + L F FG
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKSIDNKALYDTFSAFG 123
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXX 215
NI+ K+V DENG SKG+ F+ F + +AA KAI +MNG ++ FV +
Sbjct: 124 NILSCKVVCDENG-SKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFK------SR 176
Query: 216 XXXXXXLLQPARK-NKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFI 269
L A++ +++ N +++ ELF++FG S ++ D K GF+
Sbjct: 177 KEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFV 236
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKV 296
+ + A AV MNG K + V
Sbjct: 237 SYEKHEDANKAVEEMNGKEMSGKSIFV 263
Score = 262 (97.3 bits), Expect = 1.2e-21, P = 1.2e-21
Identities = 58/179 (32%), Positives = 104/179 (58%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+++ N VD++ L F +FG V+V R+ + +S+GF + + +A KA EMN
Sbjct: 193 VYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKV--------FVKNLVETVDEEELK 148
G + K + + + K +R + + +Q K++++ ++KNL +T+D+E+L+
Sbjct: 253 GKEMSGKSIFVGRAQKKV-ERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
F FG+I K++ E+G+SKGFGF+ F S + A KA+ EMNGR++ +V+LA+
Sbjct: 312 KEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Score = 158 (60.7 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 28/82 (34%), Positives = 52/82 (63%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L++ NL+ ++D++ L EF FG++ +V ++ S+GF + F++P EA KA EMN
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMN 354
Query: 97 GHLIGSKPVIITFVELKPGQRS 118
G ++GSKP+ + + K +++
Sbjct: 355 GRIVGSKPLYVALAQRKEERKA 376
>UNIPROTKB|F1NH81 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
EMBL:AADN02025122 IPI:IPI00578358 Ensembl:ENSGALT00000023333
Uniprot:F1NH81
Length = 573
Score = 393 (143.4 bits), Expect = 2.0e-36, P = 2.0e-36
Identities = 92/276 (33%), Positives = 151/276 (54%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S+DN+AL + F FG + +V ++N S+G+ + F T A++A +MN
Sbjct: 37 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 95
Query: 97 GHLIGSKPVII-TFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
G L+ + V + F K +R +G K++ V++KN E +D+E LK F KFG
Sbjct: 96 GMLLNDRKVFVGRFKSRK--EREAELGARAKEFTN--VYIKNFGEDMDDERLKELFGKFG 151
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXX 215
+ VK++ DE+GKSKGFGF+ F ++ A+KA+ EMNG+ + +V A+
Sbjct: 152 PALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTE 211
Query: 216 XXXXXXLLQPARKNK-----IFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHI 266
++ R + ++V NL I++ + F+ FGTITS+ ++ + K
Sbjct: 212 LKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGF 271
Query: 267 GFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ F P+ AT AV+ MNG + +KPL V L+ K
Sbjct: 272 GFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 307
Score = 246 (91.7 bits), Expect = 4.5e-20, P = 4.5e-20
Identities = 68/215 (31%), Positives = 107/215 (49%)
Query: 88 AKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEEL 147
A++A MN +I KPV I + + P R VG +F+KNL +++D + L
Sbjct: 1 AERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVG---------NIFIKNLDKSIDNKAL 51
Query: 148 KSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
F FGNI+ K+V DENG SKG+GF+ F + +AAE+AI +MNG ++ FV +
Sbjct: 52 YDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 110
Query: 208 IXXXXXXXXXXXXXLLQPARK-NKIFVANLPSNINNSEFEELFARFGTITSSSLVSD--- 263
L A++ +++ N ++++ +ELF +FG S +++D
Sbjct: 111 ------SRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESG 164
Query: 264 --KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
K GF+ F + A AV MNG K + V
Sbjct: 165 KSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 199
Score = 156 (60.0 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 41/134 (30%), Positives = 67/134 (50%)
Query: 127 QYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEK 186
+Y+ ++VKNL + +D+E L+ F FG I K++ E G+SKGFGF+ F S + A K
Sbjct: 226 RYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATK 284
Query: 187 AIIEMNGRMIQHNSTFVSLAE--------IXXXXXXXXXXXXXL-------LQPARKNKI 231
A+ EMNGR++ +V+LA+ + + QPA +
Sbjct: 285 AVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGY 344
Query: 232 FVANLPSNINNSEF 245
F+A +P N + +
Sbjct: 345 FMAAIPQTQNRAAY 358
>UNIPROTKB|E7EQV3 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00977833
ProteinModelPortal:E7EQV3 SMR:E7EQV3 Ensembl:ENST00000519004
ArrayExpress:E7EQV3 Bgee:E7EQV3 Uniprot:E7EQV3
Length = 591
Score = 393 (143.4 bits), Expect = 2.9e-36, P = 2.9e-36
Identities = 92/276 (33%), Positives = 151/276 (54%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S+DN+AL + F FG + +V ++N S+G+ + F T A++A +MN
Sbjct: 56 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 114
Query: 97 GHLIGSKPVII-TFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
G L+ + V + F K +R +G K++ V++KN E +D+E LK F KFG
Sbjct: 115 GMLLNDRKVFVGRFKSRK--EREAELGARAKEFTN--VYIKNFGEDMDDERLKDLFGKFG 170
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXX 215
+ VK++ DE+GKSKGFGF+ F ++ A+KA+ EMNG+ + +V A+
Sbjct: 171 PALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTE 230
Query: 216 XXXXXXLLQPARKNK-----IFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHI 266
++ R + ++V NL I++ + F+ FGTITS+ ++ + K
Sbjct: 231 LKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGF 290
Query: 267 GFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ F P+ AT AV+ MNG + +KPL V L+ K
Sbjct: 291 GFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 326
Score = 275 (101.9 bits), Expect = 3.5e-23, P = 3.5e-23
Identities = 73/229 (31%), Positives = 116/229 (50%)
Query: 74 SRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKV 133
S G+A + F PA+A++A MN +I KPV I + + P R VG +
Sbjct: 6 SLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVG---------NI 56
Query: 134 FVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNG 193
F+KNL +++D + L F FGNI+ K+V DENG SKG+GF+ F + +AAE+AI +MNG
Sbjct: 57 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNG 115
Query: 194 RMIQHNSTFVSLAEIXXXXXXXXXXXXXLLQPARK-NKIFVANLPSNINNSEFEELFARF 252
++ FV + L A++ +++ N ++++ ++LF +F
Sbjct: 116 MLLNDRKVFVGRFK------SRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKF 169
Query: 253 GTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
G S +++D K GF+ F + A AV MNG K + V
Sbjct: 170 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 218
Score = 156 (60.0 bits), Expect = 2.4e-08, P = 2.4e-08
Identities = 41/134 (30%), Positives = 67/134 (50%)
Query: 127 QYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEK 186
+Y+ ++VKNL + +D+E L+ F FG I K++ E G+SKGFGF+ F S + A K
Sbjct: 245 RYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATK 303
Query: 187 AIIEMNGRMIQHNSTFVSLAE--------IXXXXXXXXXXXXXL-------LQPARKNKI 231
A+ EMNGR++ +V+LA+ + + QPA +
Sbjct: 304 AVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGY 363
Query: 232 FVANLPSNINNSEF 245
F+A +P N + +
Sbjct: 364 FMAAIPQTQNRAAY 377
>ZFIN|ZDB-GENE-050308-1 [details] [associations]
symbol:pabpc1b "poly A binding protein, cytoplasmic 1
b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-050308-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CU468682 EMBL:CU468824
EMBL:BC059662 EMBL:BC063948 IPI:IPI00493464 RefSeq:NP_957176.1
UniGene:Dr.99377 SMR:Q6P3L1 STRING:Q6P3L1
Ensembl:ENSDART00000032474 GeneID:393856 KEGG:dre:393856 CTD:393856
InParanoid:Q6P3L1 NextBio:20814840 Uniprot:Q6P3L1
Length = 634
Score = 395 (144.1 bits), Expect = 3.0e-36, P = 3.0e-36
Identities = 89/276 (32%), Positives = 153/276 (55%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S+DN+AL + F FG + +V ++N S+G+ + F T A++A +MN
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 159
Query: 97 GHLIGSKPVII-TFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
G L+ + V + F K +R +G K++ V++KN E +D+++LK F K+G
Sbjct: 160 GMLLNDRKVFVGRFKSRK--EREAELGARAKEFTN--VYIKNFGEDMDDDKLKDIFSKYG 215
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXX 215
N + ++++ DENGKS+GFGF+ F ++ A++A+ EMNG+ + +V A+
Sbjct: 216 NAMSIRVMTDENGKSRGFGFVSFERHEDAQRAVDEMNGKEMNGKLIYVGRAQKKVERQTE 275
Query: 216 XXXXXXLLQPARKNK-----IFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHI 266
++ R + ++V NL I++ + F+ FGTITS+ ++ D K
Sbjct: 276 LKRKFEQMKQDRMTRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMDGGRSKGF 335
Query: 267 GFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ F P+ AT AV+ MNG + +KPL V L+ K
Sbjct: 336 GFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 371
Score = 301 (111.0 bits), Expect = 6.3e-26, P = 6.3e-26
Identities = 79/267 (29%), Positives = 135/267 (50%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L V L +F G + +RV R+ S G+A + F PA+A++A M
Sbjct: 13 LYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N +I +PV I + + P R VG +F+KNL +++D + L F FG
Sbjct: 73 NFDVIKGRPVRIMWSQRDPSLRKSGVG---------NIFIKNLDKSIDNKALYDTFSAFG 123
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXX 215
NI+ K+V DENG SKG+GF+ F + +AAE+AI +MNG ++ FV +
Sbjct: 124 NILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK------SR 176
Query: 216 XXXXXXLLQPARK-NKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKH-----IGFI 269
L A++ +++ N ++++ + +++F+++G S +++D++ GF+
Sbjct: 177 KEREAELGARAKEFTNVYIKNFGEDMDDDKLKDIFSKYGNAMSIRVMTDENGKSRGFGFV 236
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKV 296
F + A AV MNG K + V
Sbjct: 237 SFERHEDAQRAVDEMNGKEMNGKLIYV 263
>RGD|1563142 [details] [associations]
symbol:Pabpc1l "poly(A) binding protein, cytoplasmic 1-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1563142
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 OrthoDB:EOG4K6G3V
GeneTree:ENSGT00640000091232 IPI:IPI00778604
ProteinModelPortal:D3ZAS7 Ensembl:ENSRNOT00000055172
UCSC:RGD:1563142 Uniprot:D3ZAS7
Length = 607
Score = 392 (143.0 bits), Expect = 4.8e-36, P = 4.8e-36
Identities = 91/275 (33%), Positives = 152/275 (55%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NLE S+DN+AL + F FG++ +V N++ SRGF + F T A+KA MN
Sbjct: 101 IFIKNLENSIDNKALYDTFSTFGSILSSKVVYNEHG-SRGFGFVHFETHEAAQKAINTMN 159
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G L+ + V + + + +R +G + ++VKNL +DE+ L+ F +FG
Sbjct: 160 GMLLNDRKVFVGHFKSRQ-KREAELGARALGFTN--IYVKNLRVDMDEQGLQDLFSQFGK 216
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXXX 216
VK++RD NG+S+GFGFI F ++ A+KA+ MNG+ + +V A+
Sbjct: 217 TQSVKVMRDSNGQSRGFGFINFEKHEEAQKAVDHMNGKEVSGQLLYVGRAQKRAERQNEL 276
Query: 217 XXXXXLLQPARKNK-----IFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIG 267
++ R+N+ ++V NL +IN+ +E+F+ +G ITS+ ++++ K G
Sbjct: 277 KRRFEQMKQERQNRYQGVNLYVKNLDDSINDDRLKEVFSTYGVITSAKVMTESSHSKGFG 336
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F+ F P+ AT AV+ MNG + +KPL V L+ K
Sbjct: 337 FVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 371
Score = 296 (109.3 bits), Expect = 2.0e-25, P = 2.0e-25
Identities = 81/256 (31%), Positives = 125/256 (48%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L P V L F GT+ +RV R+ S G+A I F PA+A++A M
Sbjct: 13 LYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N +I +P+ I + PG R +G +F+KNL ++D + L F FG
Sbjct: 73 NFEMIKGQPIRIMWSHRDPGLRRSGMG---------NIFIKNLENSIDNKALYDTFSTFG 123
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXX 215
+I+ K+V +E+G S+GFGF+ F +++AA+KAI MNG ++ FV
Sbjct: 124 SILSSKVVYNEHG-SRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVG--HFKSRQKRE 180
Query: 216 XXXXXXLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKH-----IGFIE 270
L I+V NL +++ ++LF++FG S ++ D + GFI
Sbjct: 181 AELGARALG---FTNIYVKNLRVDMDEQGLQDLFSQFGKTQSVKVMRDSNGQSRGFGFIN 237
Query: 271 FIMPKHATHAVSTMNG 286
F + A AV MNG
Sbjct: 238 FEKHEEAQKAVDHMNG 253
Score = 144 (55.7 bits), Expect = 5.6e-07, P = 5.6e-07
Identities = 26/82 (31%), Positives = 49/82 (59%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L+V NL+ S+++ L F +G + +V ++ S+GF + F++P EA KA EMN
Sbjct: 296 LYVKNLDDSINDDRLKEVFSTYGVITSAKVM-TESSHSKGFGFVCFSSPEEATKAVTEMN 354
Query: 97 GHLIGSKPVIITFVELKPGQRS 118
G ++G+KP+ + + K +++
Sbjct: 355 GRIVGTKPLYVALAQRKEERKA 376
>MGI|MGI:1349722 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
MGI:MGI:1349722 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 EMBL:CH466541 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 ChiTaRS:PABPC1 EMBL:X65553 EMBL:AK044829
EMBL:AK133196 EMBL:AK159703 EMBL:AK159733 EMBL:AK160968
EMBL:AK161123 EMBL:AK161671 EMBL:AK168466 EMBL:BC003870
EMBL:BC011207 EMBL:BC023145 EMBL:BC046233 IPI:IPI00124287
PIR:I48718 RefSeq:NP_032800.2 UniGene:Mm.371570
ProteinModelPortal:P29341 SMR:P29341 DIP:DIP-32127N IntAct:P29341
STRING:P29341 PhosphoSite:P29341 REPRODUCTION-2DPAGE:P29341
PaxDb:P29341 PRIDE:P29341 Ensembl:ENSMUST00000001809 GeneID:18458
KEGG:mmu:18458 InParanoid:Q99L36 NextBio:294152 Bgee:P29341
CleanEx:MM_PABPC1 Genevestigator:P29341
GermOnline:ENSMUSG00000022283 Uniprot:P29341
Length = 636
Score = 393 (143.4 bits), Expect = 5.2e-36, P = 5.2e-36
Identities = 92/276 (33%), Positives = 151/276 (54%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S+DN+AL + F FG + +V ++N S+G+ + F T A++A +MN
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 159
Query: 97 GHLIGSKPVII-TFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
G L+ + V + F K +R +G K++ V++KN E +D+E LK F KFG
Sbjct: 160 GMLLNDRKVFVGRFKSRK--EREAELGARAKEFTN--VYIKNFGEDMDDERLKELFGKFG 215
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXX 215
+ VK++ DE+GKSKGFGF+ F ++ A+KA+ EMNG+ + +V A+
Sbjct: 216 PALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTE 275
Query: 216 XXXXXXLLQPARKNK-----IFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHI 266
++ R + ++V NL I++ + F+ FGTITS+ ++ + K
Sbjct: 276 LKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGF 335
Query: 267 GFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ F P+ AT AV+ MNG + +KPL V L+ K
Sbjct: 336 GFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 371
Score = 319 (117.4 bits), Expect = 7.1e-28, P = 7.1e-28
Identities = 85/267 (31%), Positives = 133/267 (49%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L P V L +F G + +RV R+ S G+A + F PA+A++A M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N +I KPV I + + P R VG +F+KNL +++D + L F FG
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVG---------NIFIKNLDKSIDNKALYDTFSAFG 123
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXX 215
NI+ K+V DENG SKG+GF+ F + +AAE+AI +MNG ++ FV +
Sbjct: 124 NILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK------SR 176
Query: 216 XXXXXXLLQPARK-NKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFI 269
L A++ +++ N ++++ +ELF +FG S +++D K GF+
Sbjct: 177 KEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFV 236
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKV 296
F + A AV MNG K + V
Sbjct: 237 SFERHEDAQKAVDEMNGKELNGKQIYV 263
Score = 156 (60.0 bits), Expect = 2.7e-08, P = 2.7e-08
Identities = 41/134 (30%), Positives = 67/134 (50%)
Query: 127 QYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEK 186
+Y+ ++VKNL + +D+E L+ F FG I K++ E G+SKGFGF+ F S + A K
Sbjct: 290 RYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATK 348
Query: 187 AIIEMNGRMIQHNSTFVSLAE--------IXXXXXXXXXXXXXL-------LQPARKNKI 231
A+ EMNGR++ +V+LA+ + + QPA +
Sbjct: 349 AVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGY 408
Query: 232 FVANLPSNINNSEF 245
F+A +P N + +
Sbjct: 409 FMAAIPQTQNRAAY 422
>RGD|619838 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO;ISS]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO;ISS] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO;ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
RGD:619838 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 EMBL:AJ298278 EMBL:BC083176 IPI:IPI00189074
RefSeq:NP_599180.1 UniGene:Rn.127813 UniGene:Rn.29024
ProteinModelPortal:Q9EPH8 SMR:Q9EPH8 IntAct:Q9EPH8
MINT:MINT-4576919 STRING:Q9EPH8 PhosphoSite:Q9EPH8 PRIDE:Q9EPH8
Ensembl:ENSRNOT00000012775 GeneID:171350 KEGG:rno:171350
UCSC:RGD:619838 InParanoid:Q9EPH8 NextBio:622119
Genevestigator:Q9EPH8 GermOnline:ENSRNOG00000008639 Uniprot:Q9EPH8
Length = 636
Score = 393 (143.4 bits), Expect = 5.2e-36, P = 5.2e-36
Identities = 92/276 (33%), Positives = 151/276 (54%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S+DN+AL + F FG + +V ++N S+G+ + F T A++A +MN
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 159
Query: 97 GHLIGSKPVII-TFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
G L+ + V + F K +R +G K++ V++KN E +D+E LK F KFG
Sbjct: 160 GMLLNDRKVFVGRFKSRK--EREAELGARAKEFTN--VYIKNFGEDMDDERLKELFGKFG 215
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXX 215
+ VK++ DE+GKSKGFGF+ F ++ A+KA+ EMNG+ + +V A+
Sbjct: 216 PALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTE 275
Query: 216 XXXXXXLLQPARKNK-----IFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHI 266
++ R + ++V NL I++ + F+ FGTITS+ ++ + K
Sbjct: 276 LKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGF 335
Query: 267 GFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ F P+ AT AV+ MNG + +KPL V L+ K
Sbjct: 336 GFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 371
Score = 319 (117.4 bits), Expect = 7.1e-28, P = 7.1e-28
Identities = 85/267 (31%), Positives = 133/267 (49%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L P V L +F G + +RV R+ S G+A + F PA+A++A M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N +I KPV I + + P R VG +F+KNL +++D + L F FG
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVG---------NIFIKNLDKSIDNKALYDTFSAFG 123
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXX 215
NI+ K+V DENG SKG+GF+ F + +AAE+AI +MNG ++ FV +
Sbjct: 124 NILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK------SR 176
Query: 216 XXXXXXLLQPARK-NKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFI 269
L A++ +++ N ++++ +ELF +FG S +++D K GF+
Sbjct: 177 KEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFV 236
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKV 296
F + A AV MNG K + V
Sbjct: 237 SFERHEDAQKAVDEMNGKELNGKQIYV 263
Score = 156 (60.0 bits), Expect = 2.7e-08, P = 2.7e-08
Identities = 41/134 (30%), Positives = 67/134 (50%)
Query: 127 QYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEK 186
+Y+ ++VKNL + +D+E L+ F FG I K++ E G+SKGFGF+ F S + A K
Sbjct: 290 RYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATK 348
Query: 187 AIIEMNGRMIQHNSTFVSLAE--------IXXXXXXXXXXXXXL-------LQPARKNKI 231
A+ EMNGR++ +V+LA+ + + QPA +
Sbjct: 349 AVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGY 408
Query: 232 FVANLPSNINNSEF 245
F+A +P N + +
Sbjct: 409 FMAAIPQTQNRAAY 422
>UNIPROTKB|P61286 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9913 "Bos taurus" [GO:0005515 "protein binding"
evidence=IPI] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000184 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0071013
GO:GO:0010494 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AJ401269 EMBL:BC102365 IPI:IPI00705440 RefSeq:NP_776993.1
UniGene:Bt.53579 ProteinModelPortal:P61286 SMR:P61286 PRIDE:P61286
Ensembl:ENSBTAT00000064237 GeneID:282296 KEGG:bta:282296 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
BindingDB:P61286 NextBio:20806097 GO:GO:2000623 Uniprot:P61286
Length = 636
Score = 393 (143.4 bits), Expect = 5.2e-36, P = 5.2e-36
Identities = 92/276 (33%), Positives = 151/276 (54%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S+DN+AL + F FG + +V ++N S+G+ + F T A++A +MN
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 159
Query: 97 GHLIGSKPVII-TFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
G L+ + V + F K +R +G K++ V++KN E +D+E LK F KFG
Sbjct: 160 GMLLNDRKVFVGRFKSRK--EREAELGARAKEFTN--VYIKNFGEDMDDERLKDLFGKFG 215
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXX 215
+ VK++ DE+GKSKGFGF+ F ++ A+KA+ EMNG+ + +V A+
Sbjct: 216 PALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTE 275
Query: 216 XXXXXXLLQPARKNK-----IFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHI 266
++ R + ++V NL I++ + F+ FGTITS+ ++ + K
Sbjct: 276 LKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGF 335
Query: 267 GFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ F P+ AT AV+ MNG + +KPL V L+ K
Sbjct: 336 GFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 371
Score = 316 (116.3 bits), Expect = 1.5e-27, P = 1.5e-27
Identities = 84/267 (31%), Positives = 133/267 (49%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L P V L +F G + +RV R+ S G+A + F PA+A++A M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N +I KPV I + + P R VG +F+KNL +++D + L F FG
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVG---------NIFIKNLDKSIDNKALYDTFSAFG 123
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXX 215
NI+ K+V DENG SKG+GF+ F + +AAE+AI +MNG ++ FV +
Sbjct: 124 NILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK------SR 176
Query: 216 XXXXXXLLQPARK-NKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFI 269
L A++ +++ N ++++ ++LF +FG S +++D K GF+
Sbjct: 177 KEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFV 236
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKV 296
F + A AV MNG K + V
Sbjct: 237 SFERHEDAQKAVDEMNGKELNGKQIYV 263
Score = 156 (60.0 bits), Expect = 2.7e-08, P = 2.7e-08
Identities = 41/134 (30%), Positives = 67/134 (50%)
Query: 127 QYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEK 186
+Y+ ++VKNL + +D+E L+ F FG I K++ E G+SKGFGF+ F S + A K
Sbjct: 290 RYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATK 348
Query: 187 AIIEMNGRMIQHNSTFVSLAE--------IXXXXXXXXXXXXXL-------LQPARKNKI 231
A+ EMNGR++ +V+LA+ + + QPA +
Sbjct: 349 AVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGY 408
Query: 232 FVANLPSNINNSEF 245
F+A +P N + +
Sbjct: 409 FMAAIPQTQNRAAY 422
>UNIPROTKB|J9P326 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
OMA:TITSAKX EMBL:AAEX03008681 RefSeq:XP_856708.1
ProteinModelPortal:J9P326 Ensembl:ENSCAFT00000042991 GeneID:612751
KEGG:cfa:612751 Uniprot:J9P326
Length = 636
Score = 393 (143.4 bits), Expect = 5.2e-36, P = 5.2e-36
Identities = 92/276 (33%), Positives = 151/276 (54%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S+DN+AL + F FG + +V ++N S+G+ + F T A++A +MN
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 159
Query: 97 GHLIGSKPVII-TFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
G L+ + V + F K +R +G K++ V++KN E +D+E LK F KFG
Sbjct: 160 GMLLNDRKVFVGRFKSRK--EREAELGARAKEFTN--VYIKNFGEDMDDERLKDLFGKFG 215
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXX 215
+ VK++ DE+GKSKGFGF+ F ++ A+KA+ EMNG+ + +V A+
Sbjct: 216 PALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTE 275
Query: 216 XXXXXXLLQPARKNK-----IFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHI 266
++ R + ++V NL I++ + F+ FGTITS+ ++ + K
Sbjct: 276 LKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGF 335
Query: 267 GFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ F P+ AT AV+ MNG + +KPL V L+ K
Sbjct: 336 GFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 371
Score = 316 (116.3 bits), Expect = 1.5e-27, P = 1.5e-27
Identities = 84/267 (31%), Positives = 133/267 (49%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L P V L +F G + +RV R+ S G+A + F PA+A++A M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N +I KPV I + + P R VG +F+KNL +++D + L F FG
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVG---------NIFIKNLDKSIDNKALYDTFSAFG 123
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXX 215
NI+ K+V DENG SKG+GF+ F + +AAE+AI +MNG ++ FV +
Sbjct: 124 NILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK------SR 176
Query: 216 XXXXXXLLQPARK-NKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFI 269
L A++ +++ N ++++ ++LF +FG S +++D K GF+
Sbjct: 177 KEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFV 236
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKV 296
F + A AV MNG K + V
Sbjct: 237 SFERHEDAQKAVDEMNGKELNGKQIYV 263
Score = 156 (60.0 bits), Expect = 2.7e-08, P = 2.7e-08
Identities = 41/134 (30%), Positives = 67/134 (50%)
Query: 127 QYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEK 186
+Y+ ++VKNL + +D+E L+ F FG I K++ E G+SKGFGF+ F S + A K
Sbjct: 290 RYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATK 348
Query: 187 AIIEMNGRMIQHNSTFVSLAE--------IXXXXXXXXXXXXXL-------LQPARKNKI 231
A+ EMNGR++ +V+LA+ + + QPA +
Sbjct: 349 AVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGY 408
Query: 232 FVANLPSNINNSEF 245
F+A +P N + +
Sbjct: 409 FMAAIPQTQNRAAY 422
>UNIPROTKB|P11940 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IDA;TAS]
[GO:0006378 "mRNA polyadenylation" evidence=TAS] [GO:0005737
"cytoplasm" evidence=IDA;TAS] [GO:0048255 "mRNA stabilization"
evidence=TAS] [GO:0008494 "translation activator activity"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008022 "protein C-terminus binding" evidence=IPI] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:2000623 "negative
regulation of nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=TAS] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0044267 "cellular protein metabolic
process" evidence=TAS] [GO:0045727 "positive regulation of
translation" evidence=TAS] Reactome:REACT_71 Reactome:REACT_21257
Reactome:REACT_17015 InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 GO:GO:0000184 GO:GO:0000166 GO:GO:0006413
Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0008494 GO:GO:0048255
GO:GO:0000398 GO:GO:0071013 PDB:3KTR PDBsum:3KTR GO:GO:0010494
eggNOG:COG0724 GO:GO:0000289 GO:GO:0008143 HOVERGEN:HBG002295
Reactome:REACT_1762 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 PDB:3KUI PDBsum:3KUI
PDB:2RQG PDB:2RQH PDBsum:2RQG PDBsum:2RQH PDB:3KUJ PDBsum:3KUJ
PDB:4F02 PDBsum:4F02 PDB:3PTH PDBsum:3PTH PDB:3PKN PDBsum:3PKN
CTD:26986 OMA:TITSAKX OrthoDB:EOG40ZQX5 GO:GO:2000623 EMBL:Y00345
EMBL:U68104 EMBL:U68093 EMBL:U68094 EMBL:U68095 EMBL:U68097
EMBL:U68098 EMBL:U68099 EMBL:U68100 EMBL:U68101 EMBL:U68102
EMBL:U68103 EMBL:AP001205 EMBL:BC015958 EMBL:BC023520 EMBL:Z48501
IPI:IPI00008524 IPI:IPI00410017 PIR:A93668 PIR:S52491
RefSeq:NP_002559.2 UniGene:Hs.387804 PDB:1CVJ PDB:1G9L PDB:1JGN
PDB:1JH4 PDB:2K8G PDB:2X04 PDB:3KTP PDB:3KUR PDB:3KUS PDB:3KUT
PDB:4F25 PDB:4F26 PDBsum:1CVJ PDBsum:1G9L PDBsum:1JGN PDBsum:1JH4
PDBsum:2K8G PDBsum:2X04 PDBsum:3KTP PDBsum:3KUR PDBsum:3KUS
PDBsum:3KUT PDBsum:4F25 PDBsum:4F26 ProteinModelPortal:P11940
SMR:P11940 DIP:DIP-31613N IntAct:P11940 MINT:MINT-96210
STRING:P11940 PhosphoSite:P11940 DMDM:3183544 PaxDb:P11940
PRIDE:P11940 DNASU:26986 Ensembl:ENST00000318607 GeneID:26986
KEGG:hsa:26986 UCSC:uc003yjs.1 GeneCards:GC08M101715 HGNC:HGNC:8554
HPA:CAB011536 HPA:HPA045423 MIM:604679 neXtProt:NX_P11940
PharmGKB:PA32880 InParanoid:P11940 PhylomeDB:P11940
BindingDB:P11940 ChEMBL:CHEMBL1293286 ChiTaRS:PABPC1
EvolutionaryTrace:P11940 GenomeRNAi:26986 NextBio:49454
PMAP-CutDB:P11940 ArrayExpress:P11940 Bgee:P11940 CleanEx:HS_PABPC1
Genevestigator:P11940 GermOnline:ENSG00000070756 Uniprot:P11940
Length = 636
Score = 393 (143.4 bits), Expect = 5.2e-36, P = 5.2e-36
Identities = 92/276 (33%), Positives = 151/276 (54%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S+DN+AL + F FG + +V ++N S+G+ + F T A++A +MN
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 159
Query: 97 GHLIGSKPVII-TFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
G L+ + V + F K +R +G K++ V++KN E +D+E LK F KFG
Sbjct: 160 GMLLNDRKVFVGRFKSRK--EREAELGARAKEFTN--VYIKNFGEDMDDERLKDLFGKFG 215
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXX 215
+ VK++ DE+GKSKGFGF+ F ++ A+KA+ EMNG+ + +V A+
Sbjct: 216 PALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTE 275
Query: 216 XXXXXXLLQPARKNK-----IFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHI 266
++ R + ++V NL I++ + F+ FGTITS+ ++ + K
Sbjct: 276 LKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGF 335
Query: 267 GFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ F P+ AT AV+ MNG + +KPL V L+ K
Sbjct: 336 GFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 371
Score = 316 (116.3 bits), Expect = 1.5e-27, P = 1.5e-27
Identities = 84/267 (31%), Positives = 133/267 (49%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L P V L +F G + +RV R+ S G+A + F PA+A++A M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N +I KPV I + + P R VG +F+KNL +++D + L F FG
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVG---------NIFIKNLDKSIDNKALYDTFSAFG 123
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXX 215
NI+ K+V DENG SKG+GF+ F + +AAE+AI +MNG ++ FV +
Sbjct: 124 NILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK------SR 176
Query: 216 XXXXXXLLQPARK-NKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFI 269
L A++ +++ N ++++ ++LF +FG S +++D K GF+
Sbjct: 177 KEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFV 236
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKV 296
F + A AV MNG K + V
Sbjct: 237 SFERHEDAQKAVDEMNGKELNGKQIYV 263
Score = 156 (60.0 bits), Expect = 2.7e-08, P = 2.7e-08
Identities = 41/134 (30%), Positives = 67/134 (50%)
Query: 127 QYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEK 186
+Y+ ++VKNL + +D+E L+ F FG I K++ E G+SKGFGF+ F S + A K
Sbjct: 290 RYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATK 348
Query: 187 AIIEMNGRMIQHNSTFVSLAE--------IXXXXXXXXXXXXXL-------LQPARKNKI 231
A+ EMNGR++ +V+LA+ + + QPA +
Sbjct: 349 AVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGY 408
Query: 232 FVANLPSNINNSEF 245
F+A +P N + +
Sbjct: 409 FMAAIPQTQNRAAY 422
>UNIPROTKB|F2Z557 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
EMBL:CU302394 RefSeq:XP_001927782.1 UniGene:Ssc.41568
ProteinModelPortal:F2Z557 SMR:F2Z557 PRIDE:F2Z557
Ensembl:ENSSSCT00000006652 GeneID:100153958 KEGG:ssc:100153958
Uniprot:F2Z557
Length = 636
Score = 393 (143.4 bits), Expect = 5.2e-36, P = 5.2e-36
Identities = 92/276 (33%), Positives = 151/276 (54%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S+DN+AL + F FG + +V ++N S+G+ + F T A++A +MN
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 159
Query: 97 GHLIGSKPVII-TFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
G L+ + V + F K +R +G K++ V++KN E +D+E LK F KFG
Sbjct: 160 GMLLNDRKVFVGRFKSRK--EREAELGARAKEFTN--VYIKNFGEDMDDERLKDLFGKFG 215
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXX 215
+ VK++ DE+GKSKGFGF+ F ++ A+KA+ EMNG+ + +V A+
Sbjct: 216 PALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTE 275
Query: 216 XXXXXXLLQPARKNK-----IFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHI 266
++ R + ++V NL I++ + F+ FGTITS+ ++ + K
Sbjct: 276 LKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGF 335
Query: 267 GFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ F P+ AT AV+ MNG + +KPL V L+ K
Sbjct: 336 GFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 371
Score = 316 (116.3 bits), Expect = 1.5e-27, P = 1.5e-27
Identities = 84/267 (31%), Positives = 133/267 (49%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L P V L +F G + +RV R+ S G+A + F PA+A++A M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N +I KPV I + + P R VG +F+KNL +++D + L F FG
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVG---------NIFIKNLDKSIDNKALYDTFSAFG 123
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXX 215
NI+ K+V DENG SKG+GF+ F + +AAE+AI +MNG ++ FV +
Sbjct: 124 NILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK------SR 176
Query: 216 XXXXXXLLQPARK-NKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFI 269
L A++ +++ N ++++ ++LF +FG S +++D K GF+
Sbjct: 177 KEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFV 236
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKV 296
F + A AV MNG K + V
Sbjct: 237 SFERHEDAQKAVDEMNGKELNGKQIYV 263
Score = 156 (60.0 bits), Expect = 2.7e-08, P = 2.7e-08
Identities = 41/134 (30%), Positives = 67/134 (50%)
Query: 127 QYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEK 186
+Y+ ++VKNL + +D+E L+ F FG I K++ E G+SKGFGF+ F S + A K
Sbjct: 290 RYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATK 348
Query: 187 AIIEMNGRMIQHNSTFVSLAE--------IXXXXXXXXXXXXXL-------LQPARKNKI 231
A+ EMNGR++ +V+LA+ + + QPA +
Sbjct: 349 AVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGY 408
Query: 232 FVANLPSNINNSEF 245
F+A +P N + +
Sbjct: 409 FMAAIPQTQNRAAY 422
>UNIPROTKB|Q5R8F7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9601 "Pongo abelii" [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0010494
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HSSP:P11940 GO:GO:2000623 EMBL:CR859795
RefSeq:NP_001128842.1 UniGene:Pab.18910 ProteinModelPortal:Q5R8F7
SMR:Q5R8F7 PRIDE:Q5R8F7 GeneID:100189758 KEGG:pon:100189758
InParanoid:Q5R8F7 Uniprot:Q5R8F7
Length = 636
Score = 393 (143.4 bits), Expect = 5.2e-36, P = 5.2e-36
Identities = 92/276 (33%), Positives = 151/276 (54%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S+DN+AL + F FG + +V ++N S+G+ + F T A++A +MN
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 159
Query: 97 GHLIGSKPVII-TFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
G L+ + V + F K +R +G K++ V++KN E +D+E LK F KFG
Sbjct: 160 GMLLNDRKVFVGRFKSRK--EREAELGARAKEFTN--VYIKNFGEDMDDERLKDLFGKFG 215
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXX 215
+ VK++ DE+GKSKGFGF+ F ++ A+KA+ EMNG+ + +V A+
Sbjct: 216 PALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTE 275
Query: 216 XXXXXXLLQPARKNK-----IFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHI 266
++ R + ++V NL I++ + F+ FGTITS+ ++ + K
Sbjct: 276 LKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGF 335
Query: 267 GFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ F P+ AT AV+ MNG + +KPL V L+ K
Sbjct: 336 GFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 371
Score = 312 (114.9 bits), Expect = 4.1e-27, P = 4.1e-27
Identities = 83/267 (31%), Positives = 132/267 (49%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L P L +F G + +RV R+ S G+A + F PA+A++A M
Sbjct: 13 LYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N +I KPV I + + P R VG +F+KNL +++D + L F FG
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVG---------NIFIKNLDKSIDNKALYDTFSAFG 123
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXX 215
NI+ K+V DENG SKG+GF+ F + +AAE+AI +MNG ++ FV +
Sbjct: 124 NILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK------SR 176
Query: 216 XXXXXXLLQPARK-NKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFI 269
L A++ +++ N ++++ ++LF +FG S +++D K GF+
Sbjct: 177 KEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFV 236
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKV 296
F + A AV MNG K + V
Sbjct: 237 SFERHEDAQKAVDEMNGKELNGKQIYV 263
Score = 156 (60.0 bits), Expect = 2.7e-08, P = 2.7e-08
Identities = 41/134 (30%), Positives = 67/134 (50%)
Query: 127 QYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEK 186
+Y+ ++VKNL + +D+E L+ F FG I K++ E G+SKGFGF+ F S + A K
Sbjct: 290 RYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATK 348
Query: 187 AIIEMNGRMIQHNSTFVSLAE--------IXXXXXXXXXXXXXL-------LQPARKNKI 231
A+ EMNGR++ +V+LA+ + + QPA +
Sbjct: 349 AVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGY 408
Query: 232 FVANLPSNINNSEF 245
F+A +P N + +
Sbjct: 409 FMAAIPQTQNRAAY 422
>UNIPROTKB|I3LS00 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000623 "negative regulation of nuclear-transcribed
mRNA catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0071013 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
GO:GO:2000623 EMBL:CU302394 Ensembl:ENSSSCT00000032533
Uniprot:I3LS00
Length = 647
Score = 393 (143.4 bits), Expect = 5.7e-36, P = 5.7e-36
Identities = 92/276 (33%), Positives = 151/276 (54%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S+DN+AL + F FG + +V ++N S+G+ + F T A++A +MN
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 159
Query: 97 GHLIGSKPVII-TFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
G L+ + V + F K +R +G K++ V++KN E +D+E LK F KFG
Sbjct: 160 GMLLNDRKVFVGRFKSRK--EREAELGARAKEFTN--VYIKNFGEDMDDERLKDLFGKFG 215
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXX 215
+ VK++ DE+GKSKGFGF+ F ++ A+KA+ EMNG+ + +V A+
Sbjct: 216 PALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTE 275
Query: 216 XXXXXXLLQPARKNK-----IFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHI 266
++ R + ++V NL I++ + F+ FGTITS+ ++ + K
Sbjct: 276 LKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGF 335
Query: 267 GFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ F P+ AT AV+ MNG + +KPL V L+ K
Sbjct: 336 GFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 371
Score = 316 (116.3 bits), Expect = 1.6e-27, P = 1.6e-27
Identities = 84/267 (31%), Positives = 133/267 (49%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L P V L +F G + +RV R+ S G+A + F PA+A++A M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N +I KPV I + + P R VG +F+KNL +++D + L F FG
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVG---------NIFIKNLDKSIDNKALYDTFSAFG 123
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXX 215
NI+ K+V DENG SKG+GF+ F + +AAE+AI +MNG ++ FV +
Sbjct: 124 NILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK------SR 176
Query: 216 XXXXXXLLQPARK-NKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFI 269
L A++ +++ N ++++ ++LF +FG S +++D K GF+
Sbjct: 177 KEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFV 236
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKV 296
F + A AV MNG K + V
Sbjct: 237 SFERHEDAQKAVDEMNGKELNGKQIYV 263
Score = 156 (60.0 bits), Expect = 2.7e-08, P = 2.7e-08
Identities = 41/134 (30%), Positives = 67/134 (50%)
Query: 127 QYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEK 186
+Y+ ++VKNL + +D+E L+ F FG I K++ E G+SKGFGF+ F S + A K
Sbjct: 290 RYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATK 348
Query: 187 AIIEMNGRMIQHNSTFVSLAE--------IXXXXXXXXXXXXXL-------LQPARKNKI 231
A+ EMNGR++ +V+LA+ + + QPA +
Sbjct: 349 AVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGY 408
Query: 232 FVANLPSNINNSEF 245
F+A +P N + +
Sbjct: 409 FMAAIPQTQNRAAY 422
>UNIPROTKB|E1C903 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 CTD:8761 OMA:XVVCDEN EMBL:AADN02043739
EMBL:AADN02043740 IPI:IPI00587440 RefSeq:XP_417821.2
UniGene:Gga.11375 ProteinModelPortal:E1C903 PRIDE:E1C903
Ensembl:ENSGALT00000006028 GeneID:419674 KEGG:gga:419674
NextBio:20822696 Uniprot:E1C903
Length = 630
Score = 389 (142.0 bits), Expect = 1.4e-35, P = 1.4e-35
Identities = 92/274 (33%), Positives = 150/274 (54%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+DN+AL + F FG + +V ++N S+G+A + F T A +A +MNG
Sbjct: 103 IKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGM 161
Query: 99 LIGSKPVII-TFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNI 157
L+ + V + F K +R +G + K++ V++KN + +D+E LK F K+G
Sbjct: 162 LLNDRKVFVGRFKSRK--EREAELGAKAKEFTN--VYIKNFGDDMDDERLKELFSKYGKT 217
Query: 158 IEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXXXX 217
+ VK++ D GKSKGFGF+ F ++ A KA+ EMNG+ I FV A+
Sbjct: 218 LSVKVMTDPTGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQAELK 277
Query: 218 XXXXLLQPARKNK-----IFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGF 268
L+ R ++ +++ NL I++ + + F+ FG+ITS+ ++ + K GF
Sbjct: 278 RRFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGF 337
Query: 269 IEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
+ F P+ AT AV+ MNG + SKPL V L+ K
Sbjct: 338 VCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRK 371
Score = 303 (111.7 bits), Expect = 3.8e-26, P = 3.8e-26
Identities = 81/263 (30%), Positives = 130/263 (49%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L P V L +F G + +RV R+ S G+A + F PA+A++A M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N +I KP+ I + + P R VG VF+KNL +++D + L F FG
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKSIDNKALYDTFSAFG 123
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXX 215
NI+ K+V DENG SKG+ F+ F + AA++AI +MNG ++ FV +
Sbjct: 124 NILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFK------SR 176
Query: 216 XXXXXXLLQPARK-NKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFI 269
L A++ +++ N ++++ +ELF+++G S +++D K GF+
Sbjct: 177 KEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPTGKSKGFGFV 236
Query: 270 EFIMPKHATHAVSTMNGHVFKSK 292
F + A AV MNG K
Sbjct: 237 SFEKHEDANKAVEEMNGKDINGK 259
Score = 260 (96.6 bits), Expect = 1.7e-21, P = 1.7e-21
Identities = 59/179 (32%), Positives = 101/179 (56%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+++ N +D++ L F K+G V+V + +S+GF + F +A KA EMN
Sbjct: 193 VYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPTGKSKGFGFVSFEKHEDANKAVEEMN 252
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKV--------FVKNLVETVDEEELK 148
G I K V + + K +R + +Q K++++ ++KNL +T+D+E+L+
Sbjct: 253 GKDINGKMVFVGRAQKKV-ERQAELKRRFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
F FG+I K++ E+G+SKGFGF+ F S + A KA+ EMNGR++ +V+LA+
Sbjct: 312 KEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Score = 158 (60.7 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 28/82 (34%), Positives = 52/82 (63%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L++ NL+ ++D++ L EF FG++ +V ++ S+GF + F++P EA KA EMN
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMN 354
Query: 97 GHLIGSKPVIITFVELKPGQRS 118
G ++GSKP+ + + K +++
Sbjct: 355 GRIVGSKPLYVALAQRKEERKA 376
>UNIPROTKB|P20965 [details] [associations]
symbol:pabpc1-a "Polyadenylate-binding protein 1-A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005844 "polysome" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0005844 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:M27072 EMBL:X57483
EMBL:BC052100 PIR:A32323 RefSeq:NP_001080204.1 UniGene:Xl.35547
ProteinModelPortal:P20965 SMR:P20965 PRIDE:P20965 GeneID:379896
KEGG:xla:379896 CTD:379896 Xenbase:XB-GENE-963463 Uniprot:P20965
Length = 633
Score = 387 (141.3 bits), Expect = 2.3e-35, P = 2.3e-35
Identities = 91/276 (32%), Positives = 151/276 (54%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S+DN+AL + F FG + +V ++N S+G+ + F T A++A +MN
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMN 159
Query: 97 GHLIGSKPVII-TFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
G L+ + V + F K +R +G K++ V++KN + +++E LK F K+G
Sbjct: 160 GMLLNDRKVFVGRFKSRK--EREAELGARAKEFTN--VYIKNFGDDMNDERLKEMFGKYG 215
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXX 215
+ VK++ D+NGKSKGFGF+ F ++ A+KA+ EMNG+ + S FV A+
Sbjct: 216 PALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQTE 275
Query: 216 XXXXXXLLQPARKNK-----IFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHI 266
++ R + ++V NL I++ + F FGTITS+ ++ + K
Sbjct: 276 LKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFLPFGTITSAKVMMEGGRSKGF 335
Query: 267 GFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ F P+ AT AV+ MNG + +KPL V L+ K
Sbjct: 336 GFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 371
Score = 306 (112.8 bits), Expect = 1.8e-26, P = 1.8e-26
Identities = 82/267 (30%), Positives = 132/267 (49%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L V L +F G + +RV R+ S G+A + F PA+A++A M
Sbjct: 13 LYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N +I +PV I + + P R VG +F+KNL +++D + L F FG
Sbjct: 73 NFDVIKGRPVRIMWSQRDPSLRKSGVG---------NIFIKNLDKSIDNKALYDTFSAFG 123
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXX 215
NI+ K+V DENG SKG+GF+ F + +AAE+AI +MNG ++ FV +
Sbjct: 124 NILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFK------SR 176
Query: 216 XXXXXXLLQPARK-NKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFI 269
L A++ +++ N ++N+ +E+F ++G S +++D K GF+
Sbjct: 177 KEREAELGARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFV 236
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKV 296
F + A AV MNG K + V
Sbjct: 237 SFERHEDAQKAVDEMNGKDMNGKSMFV 263
>ZFIN|ZDB-GENE-030131-3238 [details] [associations]
symbol:pabpc1a "poly A binding protein,
cytoplasmic 1 a" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0007507 "heart development" evidence=IMP] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-3238 GO:GO:0007507
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 OrthoDB:EOG40ZQX5
EMBL:BC099992 IPI:IPI00485280 RefSeq:NP_001026846.1
UniGene:Dr.24504 ProteinModelPortal:Q499B6 SMR:Q499B6 STRING:Q499B6
GeneID:606498 KEGG:dre:606498 CTD:606498 InParanoid:Q499B6
NextBio:20892436 ArrayExpress:Q499B6 Uniprot:Q499B6
Length = 634
Score = 383 (139.9 bits), Expect = 6.5e-35, P = 6.5e-35
Identities = 86/276 (31%), Positives = 152/276 (55%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S+DN+AL + F FG + +V ++N S+G+ + F T A++A +MN
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMN 159
Query: 97 GHLIGSKPVII-TFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
G L+ + V + F K +R +G K++ V++KN E +D+E+LK F K+G
Sbjct: 160 GMLLNDRKVFVGRFKSRK--EREAEMGARAKEFTN--VYIKNFGEDMDDEKLKEIFCKYG 215
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXX 215
+ ++++ D++GKSKGFGF+ F ++ A++A+ EMNG+ + +V A+
Sbjct: 216 PALSIRVMTDDSGKSKGFGFVSFERHEDAQRAVDEMNGKEMNGKQVYVGRAQKKGERQTE 275
Query: 216 XXXXXXLLQPARKNK-----IFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHI 266
++ R + ++V NL +++ + F+ FGTITS+ ++ + K
Sbjct: 276 LKRKFEQMKQDRMTRYQGVNLYVKNLDDGLDDERLRKEFSPFGTITSAKVMMEGGRSKGF 335
Query: 267 GFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ F P+ AT AV+ MNG + +KPL V L+ K
Sbjct: 336 GFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 371
Score = 313 (115.2 bits), Expect = 3.1e-27, P = 3.1e-27
Identities = 80/266 (30%), Positives = 132/266 (49%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L P V L +F G + +RV R+ S G+A + F PA+A++A M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQQPADAERALDTM 72
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N +I +PV I + + P R VG +F+KNL +++D + L F FG
Sbjct: 73 NFDVIKGRPVRIMWSQRDPSLRKSGVG---------NIFIKNLDKSIDNKALYDTFSAFG 123
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXX 215
NI+ K+V DENG SKG+GF+ F +++AAE+AI +MNG ++ FV +
Sbjct: 124 NILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182
Query: 216 XXXXXXLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIE 270
+ +++ N ++++ + +E+F ++G S +++D K GF+
Sbjct: 183 MGA-----RAKEFTNVYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTDDSGKSKGFGFVS 237
Query: 271 FIMPKHATHAVSTMNGHVFKSKPLKV 296
F + A AV MNG K + V
Sbjct: 238 FERHEDAQRAVDEMNGKEMNGKQVYV 263
>UNIPROTKB|Q9H361 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA;NAS] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0016071 "mRNA metabolic
process" evidence=NAS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0016071 GO:GO:0000166 Gene3D:3.30.70.330
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HPA:HPA045423 EMBL:AF132026 EMBL:AL136900
EMBL:BC027617 IPI:IPI00301154 RefSeq:NP_112241.2 UniGene:Hs.458280
PDB:2D9P PDBsum:2D9P ProteinModelPortal:Q9H361 SMR:Q9H361
IntAct:Q9H361 STRING:Q9H361 PhosphoSite:Q9H361 DMDM:28201852
PaxDb:Q9H361 PRIDE:Q9H361 DNASU:5042 Ensembl:ENST00000281589
GeneID:5042 KEGG:hsa:5042 UCSC:uc001upy.3 CTD:5042
GeneCards:GC13P025670 HGNC:HGNC:8556 MIM:604680 neXtProt:NX_Q9H361
PharmGKB:PA32882 InParanoid:Q9H361 OMA:RTVPRYK OrthoDB:EOG4KH2TN
PhylomeDB:Q9H361 EvolutionaryTrace:Q9H361 GenomeRNAi:5042
NextBio:19414 ArrayExpress:Q9H361 Bgee:Q9H361 CleanEx:HS_PABPC3
Genevestigator:Q9H361 GermOnline:ENSG00000151846 Uniprot:Q9H361
Length = 631
Score = 382 (139.5 bits), Expect = 8.3e-35, P = 8.3e-35
Identities = 91/276 (32%), Positives = 149/276 (53%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ V NL+ S++N+AL + FG + V ++N S+G+ + F T A++A +MN
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMN 159
Query: 97 GHLIGSKPVII-TFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
G L+ + V + F K +R +G K++ V++KN E +D+E LK F KFG
Sbjct: 160 GMLLNGRKVFVGQFKSRK--EREAELGARAKEFPN--VYIKNFGEDMDDERLKDLFGKFG 215
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXX 215
+ VK++ DE+GKSKGFGF+ F ++ A+KA+ EMNG+ + +V A+
Sbjct: 216 PALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTE 275
Query: 216 XXXXXXLLQPARKNK-----IFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHI 266
++ R + ++V NL I++ + F+ FGTITS+ ++ + K
Sbjct: 276 LKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGF 335
Query: 267 GFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ F P+ AT AV+ MNG + +KPL V L+ K
Sbjct: 336 GFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 371
Score = 276 (102.2 bits), Expect = 3.2e-23, P = 3.2e-23
Identities = 77/266 (28%), Positives = 125/266 (46%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L P V L +F G + +R+ R+ S +A + F +A+ A M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDTM 72
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N +I KPV I + + P R VG +FVKNL ++++ + L FG
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVG---------NIFVKNLDKSINNKALYDTVSAFG 123
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXX 215
NI+ +V DENG SKG+GF+ F +++AAE+AI +MNG ++ FV +
Sbjct: 124 NILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAE 182
Query: 216 XXXXXXLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIE 270
P +++ N ++++ ++LF +FG S +++D K GF+
Sbjct: 183 LGARAKEF-P----NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVS 237
Query: 271 FIMPKHATHAVSTMNGHVFKSKPLKV 296
F + A AV MNG K + V
Sbjct: 238 FERHEDAQKAVDEMNGKELNGKQIYV 263
Score = 132 (51.5 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 47/181 (25%), Positives = 76/181 (41%)
Query: 121 VGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFF 179
+ P Y ++V +L V E L F G I+ ++I RD S + ++ F
Sbjct: 1 MNPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQ 60
Query: 180 SYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXXXXXXXXLLQPARKNKIFVANLPSN 239
K AE A+ MN +I+ + ++ L+ + IFV NL +
Sbjct: 61 HTKDAEHALDTMNFDVIKGKPVRIMWSQRDPS-----------LRKSGVGNIFVKNLDKS 109
Query: 240 INNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLK 295
INN + + FG I S ++V D K GF+ F + A A+ MNG + + +
Sbjct: 110 INNKALYDTVSAFGNILSCNVVCDENGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVF 169
Query: 296 V 296
V
Sbjct: 170 V 170
>UNIPROTKB|E2RND1 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:AAEX03013964 Ensembl:ENSCAFT00000015215 Uniprot:E2RND1
Length = 644
Score = 378 (138.1 bits), Expect = 2.5e-34, P = 2.5e-34
Identities = 86/275 (31%), Positives = 152/275 (55%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NLE S+DN+AL + F FG + +V + + SRGF + F T A++A MN
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDDHG-SRGFGFVHFETHEAAQQAITTMN 159
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G L+ + V + + + +R +G ++ ++VKNL VDE+ L+ F +FG
Sbjct: 160 GMLLNDRKVFVGHFKSRR-EREVELGARAMEFTN--IYVKNLHVDVDEQGLQDLFSRFGK 216
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXXX 216
++ VK++RD++G S+GFGF+ F ++ A+KA+++MNG+ + +V A+
Sbjct: 217 MLSVKVMRDDSGHSRGFGFVNFQKHEEAQKAVMDMNGKEVSGRLLYVGRAQKRVERQSEL 276
Query: 217 XXXXXLLQPARKNK-----IFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIG 267
L+ R + ++V NL +I++ + + F+ +G ITS+ ++++ K G
Sbjct: 277 KRRFEQLKQDRLTRYQGVNLYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTEGGHSKGFG 336
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F+ F P+ AT AV+ MNG + +KPL V L+ K
Sbjct: 337 FVCFSSPEEATKAVTEMNGRILGTKPLYVALAQRK 371
Score = 311 (114.5 bits), Expect = 5.4e-27, P = 5.4e-27
Identities = 83/266 (31%), Positives = 132/266 (49%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L P V L +F G + +RV R+ S G+A I F PA+A++A M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N +I +P+ I + + PG R VG +F+KNL +++D + L F FG
Sbjct: 73 NFEVIKGQPIRIMWSQRDPGLRKSGVG---------NIFIKNLEDSIDNKALYDTFSTFG 123
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXX 215
NI+ K+V D++G S+GFGF+ F +++AA++AI MNG ++ FV
Sbjct: 124 NILSCKVVCDDHG-SRGFGFVHFETHEAAQQAITTMNGMLLNDRKVFVG--HFKSRRERE 180
Query: 216 XXXXXXLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDK--H---IGFIE 270
++ I+V NL +++ ++LF+RFG + S ++ D H GF+
Sbjct: 181 VELGARAME---FTNIYVKNLHVDVDEQGLQDLFSRFGKMLSVKVMRDDSGHSRGFGFVN 237
Query: 271 FIMPKHATHAVSTMNGHVFKSKPLKV 296
F + A AV MNG + L V
Sbjct: 238 FQKHEEAQKAVMDMNGKEVSGRLLYV 263
Score = 155 (59.6 bits), Expect = 3.5e-08, P = 3.5e-08
Identities = 28/82 (34%), Positives = 50/82 (60%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L+V NL+ S+D++ L EF +G + +V + S+GF + F++P EA KA EMN
Sbjct: 296 LYVKNLDDSIDDEKLRKEFSPYGVITSAKVM-TEGGHSKGFGFVCFSSPEEATKAVTEMN 354
Query: 97 GHLIGSKPVIITFVELKPGQRS 118
G ++G+KP+ + + K +++
Sbjct: 355 GRILGTKPLYVALAQRKEERKA 376
>UNIPROTKB|E1BNB4 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:DAAA02036735
EMBL:DAAA02036734 IPI:IPI00715420 ProteinModelPortal:E1BNB4
Ensembl:ENSBTAT00000022412 OMA:VMTESSH Uniprot:E1BNB4
Length = 618
Score = 377 (137.8 bits), Expect = 2.6e-34, P = 2.6e-34
Identities = 86/275 (31%), Positives = 151/275 (54%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NLE S+DN+AL + F FG + +V +++ SRGF + F T A+ A MN
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHG-SRGFGFVHFETHEAAQNAISTMN 159
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G L+ + V + + + +R +G ++ ++VKNL VDE+ L+ F +FG
Sbjct: 160 GMLLNDRKVFVGHFKSRR-EREVELGARAMEFTN--IYVKNLHVDVDEQRLQDLFSQFGK 216
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXXX 216
++ VK++RD++G S+GFGF+ F ++ A+KA++ MNGR + +V A+
Sbjct: 217 MLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVVNMNGREVSGRLLYVGRAQKRVERQNEL 276
Query: 217 XXXXXLLQPARKNK-----IFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIG 267
++ R + ++V NL +I++ + + F+ +G ITS+ ++++ K G
Sbjct: 277 KRRFEQMKQDRLTRYQGVNLYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTEGGHSKGFG 336
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F+ F P+ AT AV+ MNG + +KPL V L+ K
Sbjct: 337 FVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 371
Score = 311 (114.5 bits), Expect = 4.8e-27, P = 4.8e-27
Identities = 83/266 (31%), Positives = 131/266 (49%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L P V L +F G + +RV R+ S G+A I F PA+A++A M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N +I +P+ I + + PG R VG +F+KNL +++D + L F FG
Sbjct: 73 NFEVIKGQPIRIMWSQRDPGLRKSGVG---------NIFIKNLEDSIDNKALYDTFSTFG 123
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXX 215
NI+ K+V DE+G S+GFGF+ F +++AA+ AI MNG ++ FV
Sbjct: 124 NILSCKVVCDEHG-SRGFGFVHFETHEAAQNAISTMNGMLLNDRKVFVG--HFKSRRERE 180
Query: 216 XXXXXXLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDK--H---IGFIE 270
++ I+V NL +++ ++LF++FG + S ++ D H GF+
Sbjct: 181 VELGARAME---FTNIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDDSGHSRGFGFVN 237
Query: 271 FIMPKHATHAVSTMNGHVFKSKPLKV 296
F + A AV MNG + L V
Sbjct: 238 FEKHEEAQKAVVNMNGREVSGRLLYV 263
Score = 156 (60.0 bits), Expect = 2.5e-08, P = 2.5e-08
Identities = 28/82 (34%), Positives = 50/82 (60%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L+V NL+ S+D++ L EF +G + +V + S+GF + F++P EA KA EMN
Sbjct: 296 LYVKNLDDSIDDEKLRKEFSPYGVITSAKVM-TEGGHSKGFGFVCFSSPEEATKAVTEMN 354
Query: 97 GHLIGSKPVIITFVELKPGQRS 118
G ++G+KP+ + + K +++
Sbjct: 355 GRIVGTKPLYVALAQRKEERKA 376
>ZFIN|ZDB-GENE-030131-9663 [details] [associations]
symbol:pabpc4 "poly(A) binding protein,
cytoplasmic 4 (inducible form)" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
ZFIN:ZDB-GENE-030131-9663 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:8761 OrthoDB:EOG4T1HM1
EMBL:BC053126 IPI:IPI00489290 RefSeq:NP_958453.1 UniGene:Dr.16284
ProteinModelPortal:Q7T3G5 SMR:Q7T3G5 STRING:Q7T3G5 PRIDE:Q7T3G5
GeneID:321035 KEGG:dre:321035 InParanoid:Q7T3G5 OMA:NGMEASA
NextBio:20807204 ArrayExpress:Q7T3G5 Bgee:Q7T3G5 Uniprot:Q7T3G5
Length = 637
Score = 377 (137.8 bits), Expect = 3.1e-34, P = 3.1e-34
Identities = 88/274 (32%), Positives = 150/274 (54%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+DN+AL + F FG + +V ++N S+G+A + F T A +A +MNG
Sbjct: 104 IKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGM 162
Query: 99 LIGSKPVII-TFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNI 157
L+ + V + F K +R +G + K++ V++KN + +D++ LK F K+G
Sbjct: 163 LLNDRKVFVGRFKSRK--EREAEMGAKAKEFTN--VYIKNFGDDMDDQRLKELFDKYGKT 218
Query: 158 IEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXXXX 217
+ VK++ D GKS+GFGF+ + ++ A KA+ EMNG + + FV A+
Sbjct: 219 LSVKVMTDPTGKSRGFGFVSYEKHEDANKAVEEMNGTELNGKTVFVGRAQKKMERQAELK 278
Query: 218 XXXXLLQPARKNK-----IFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGF 268
L+ R ++ +++ NL I++ + + F+ FG+ITS+ ++ + K GF
Sbjct: 279 RKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEEGRSKGFGF 338
Query: 269 IEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
+ F P+ AT AV+ MNG + SKPL V L+ K
Sbjct: 339 VCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRK 372
Score = 291 (107.5 bits), Expect = 7.8e-25, P = 7.8e-25
Identities = 76/266 (28%), Positives = 128/266 (48%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L P + L +F G + +RV R+ S G+A + F PA+A++A M
Sbjct: 14 LYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 73
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N ++ KP+ I + + P R VG VF+KNL +++D + L F FG
Sbjct: 74 NFDVVKGKPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKSIDNKALYDTFSAFG 124
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXX 215
NI+ K+V DENG SKG+ F+ F + AA++AI +MNG ++ FV +
Sbjct: 125 NILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAE 183
Query: 216 XXXXXXLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIE 270
+ +++ N ++++ +ELF ++G S +++D + GF+
Sbjct: 184 MGA-----KAKEFTNVYIKNFGDDMDDQRLKELFDKYGKTLSVKVMTDPTGKSRGFGFVS 238
Query: 271 FIMPKHATHAVSTMNGHVFKSKPLKV 296
+ + A AV MNG K + V
Sbjct: 239 YEKHEDANKAVEEMNGTELNGKTVFV 264
Score = 263 (97.6 bits), Expect = 8.4e-22, P = 8.4e-22
Identities = 59/179 (32%), Positives = 102/179 (56%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+++ N +D+Q L F K+G V+V + +SRGF + + +A KA EMN
Sbjct: 194 VYIKNFGDDMDDQRLKELFDKYGKTLSVKVMTDPTGKSRGFGFVSYEKHEDANKAVEEMN 253
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKV--------FVKNLVETVDEEELK 148
G + K V + + K +R + + +Q K++++ ++KNL +T+D+E+L+
Sbjct: 254 GTELNGKTVFVGRAQKKM-ERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 312
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
F FG+I K++ +E G+SKGFGF+ F S + A KA+ EMNGR++ +V+LA+
Sbjct: 313 KEFSPFGSITSAKVMLEE-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 370
Score = 158 (60.7 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 28/82 (34%), Positives = 51/82 (62%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L++ NL+ ++D++ L EF FG++ +V + S+GF + F++P EA KA EMN
Sbjct: 297 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEEG-RSKGFGFVCFSSPEEATKAVTEMN 355
Query: 97 GHLIGSKPVIITFVELKPGQRS 118
G ++GSKP+ + + K +++
Sbjct: 356 GRIVGSKPLYVALAQRKEERKA 377
>UNIPROTKB|Q6IP09 [details] [associations]
symbol:pabpc1-b "Polyadenylate-binding protein 1-B"
species:8355 "Xenopus laevis" [GO:0005844 "polysome" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043621
"protein self-association" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0005844
GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC072110 EMBL:BC108462 RefSeq:NP_001085069.1
UniGene:Xl.60751 ProteinModelPortal:Q6IP09 SMR:Q6IP09 PRIDE:Q6IP09
GeneID:432140 KEGG:xla:432140 CTD:432140 Xenbase:XB-GENE-6255999
Uniprot:Q6IP09
Length = 633
Score = 375 (137.1 bits), Expect = 5.0e-34, P = 5.0e-34
Identities = 87/276 (31%), Positives = 151/276 (54%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S+DN+AL + F FG + +V ++N S+G+ + F T A++A +MN
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMN 159
Query: 97 GHLIGSKPVII-TFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
G L+ + V + F K +R +G K++ V++KN E +D+E LK F ++G
Sbjct: 160 GMLLNDRKVFVGRFKSRK--EREAELGARAKEFTN--VYIKNFGEDMDDERLKEWFGQYG 215
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXX 215
+ VK++ D++GKS+GFGF+ F ++ A+KA+ +MNG+ + + FV A+
Sbjct: 216 AALSVKVMTDDHGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQKKVERQTE 275
Query: 216 XXXXXXLLQPARKNK-----IFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHI 266
++ R + ++V NL I++ + F FG+ITS+ ++ + K
Sbjct: 276 LKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFTPFGSITSAKVMMEGGRSKGF 335
Query: 267 GFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ F P+ AT AV+ MNG + +KPL V L+ K
Sbjct: 336 GFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 371
Score = 312 (114.9 bits), Expect = 4.0e-27, P = 4.0e-27
Identities = 83/267 (31%), Positives = 132/267 (49%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L P V L +F G + +RV R+ S G+A + F PA+A++A M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N +I KPV I + + P R VG +F+KNL +++D + L F FG
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVG---------NIFIKNLDKSIDNKALYDTFSAFG 123
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXX 215
NI+ K+V DENG SKG+GF+ F + +AAE+AI +MNG ++ FV +
Sbjct: 124 NILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFK------SR 176
Query: 216 XXXXXXLLQPARK-NKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKH-----IGFI 269
L A++ +++ N ++++ +E F ++G S +++D H GF+
Sbjct: 177 KEREAELGARAKEFTNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDHGKSRGFGFV 236
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKV 296
F + A AV MNG K + V
Sbjct: 237 SFERHEDAQKAVDDMNGKDLNGKAIFV 263
>ZFIN|ZDB-GENE-030131-5836 [details] [associations]
symbol:pabpc1l "poly(A) binding protein,
cytoplasmic 1-like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-5836 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 CTD:80336
HSSP:P11940 EMBL:BC044513 IPI:IPI00863260 RefSeq:NP_956133.1
UniGene:Dr.14309 ProteinModelPortal:Q803E7 SMR:Q803E7 PRIDE:Q803E7
GeneID:327625 KEGG:dre:327625 NextBio:20810113 ArrayExpress:Q803E7
Bgee:Q803E7 Uniprot:Q803E7
Length = 620
Score = 373 (136.4 bits), Expect = 7.5e-34, P = 7.5e-34
Identities = 83/275 (30%), Positives = 150/275 (54%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + N++ S+DN+AL + F FG + +V ++N S+G+ + F T A +A MN
Sbjct: 101 IFIKNMDESIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAANRAIETMN 159
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G L+ + V + + + +R +G + ++ V++KN E +D E+LK+ F +FG
Sbjct: 160 GMLLNDRKVFVGHFKSRK-EREAEMGAKAVEFTN--VYIKNFGEDIDSEKLKNIFTEFGK 216
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXXX 216
+ V ++ DE G+S+GFGF+ F ++ A +A+ EMNG+ + +V A+
Sbjct: 217 TLSVCVMTDERGRSRGFGFVNFVNHGDARRAVTEMNGKELNGRVLYVGRAQKRLERQGEL 276
Query: 217 XXXXXLLQPARKNK-----IFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIG 267
++ R + ++V NL +I++ + + FA +GTITS+ +++D + G
Sbjct: 277 KRKFEQIKQERIQRYQGVNLYVKNLDDSIDDEKLRKEFAPYGTITSAKVMTDGGHSRGFG 336
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F+ F P+ AT AV+ MNG + +KPL V L+ K
Sbjct: 337 FVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRK 371
Score = 298 (110.0 bits), Expect = 1.3e-25, P = 1.3e-25
Identities = 79/266 (29%), Positives = 127/266 (47%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L V L +F G + +RV R+ S G+A I F PA+A+ A M
Sbjct: 13 LYVGDLHADVTEAMLYQKFSPAGQIMSIRVCRDVITRRSLGYAYINFQQPADAECALDTM 72
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N +I +P+ I + + PG R VG +F+KN+ E++D + L F FG
Sbjct: 73 NYEVIKGRPIRIMWSQRDPGLRKSGVG---------NIFIKNMDESIDNKALYDTFSAFG 123
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXX 215
NI+ K+V DENG SKG+GF+ F + +AA +AI MNG ++ FV +
Sbjct: 124 NILSCKVVCDENG-SKGYGFVHFETQEAANRAIETMNGMLLNDRKVFVGHFKSRKEREAE 182
Query: 216 XXXXXXLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKH-----IGFIE 270
+ +++ N +I++ + + +F FG S +++D+ GF+
Sbjct: 183 MGA-----KAVEFTNVYIKNFGEDIDSEKLKNIFTEFGKTLSVCVMTDERGRSRGFGFVN 237
Query: 271 FIMPKHATHAVSTMNGHVFKSKPLKV 296
F+ A AV+ MNG + L V
Sbjct: 238 FVNHGDARRAVTEMNGKELNGRVLYV 263
Score = 156 (60.0 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 29/82 (35%), Positives = 50/82 (60%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L+V NL+ S+D++ L EF +GT+ +V + SRGF + F++P EA KA EMN
Sbjct: 296 LYVKNLDDSIDDEKLRKEFAPYGTITSAKVMTD-GGHSRGFGFVCFSSPEEATKAVTEMN 354
Query: 97 GHLIGSKPVIITFVELKPGQRS 118
G ++ +KP+ + + K +++
Sbjct: 355 GRIVSTKPLYVALAQRKEERKA 376
>UNIPROTKB|Q6DEY7 [details] [associations]
symbol:epabp "Embryonic polyadenylate-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0005737
"cytoplasm" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] [GO:0031370 "eukaryotic initiation factor 4G binding"
evidence=ISS] [GO:0043009 "chordate embryonic development"
evidence=ISS] [GO:0043621 "protein self-association" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0043009
eggNOG:COG0724 GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC076956 RefSeq:NP_001005062.1 UniGene:Str.8393
ProteinModelPortal:Q6DEY7 SMR:Q6DEY7 STRING:Q6DEY7 PRIDE:Q6DEY7
GeneID:448615 KEGG:xtr:448615 CTD:80336 Xenbase:XB-GENE-5742459
HOGENOM:HOG000217922 InParanoid:Q6DEY7 OrthoDB:EOG4K6G3V
Uniprot:Q6DEY7
Length = 629
Score = 372 (136.0 bits), Expect = 1.0e-33, P = 1.0e-33
Identities = 83/273 (30%), Positives = 149/273 (54%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+DN+AL + F FG + +V +++ SRG+ + F T A +A MNG
Sbjct: 103 IKNLDESIDNKALYDTFSAFGNILSCKVVCDEHG-SRGYGFVHFETQEAANRAIQTMNGM 161
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ + V + + + +R G + ++ V++KN E +D++ L+ F FGN +
Sbjct: 162 LLNDRKVFVGHFKSRR-ERELEYGAKVMEFTN--VYIKNFGEDMDDKRLREIFSAFGNTL 218
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXXXXX 218
VK++ D+ G+S+GFGF+ + +++ A+KA+ EMNG+ + +V A+
Sbjct: 219 SVKVMMDDTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQGELKR 278
Query: 219 XXXLLQPARKNK-----IFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGFI 269
++ R N+ ++V NL I++ + F+ +GTITS+ ++++ K GF+
Sbjct: 279 KFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTEGGHSKGFGFV 338
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F P+ AT AV+ MNG + +KPL V L+ K
Sbjct: 339 CFSSPEEATKAVTEMNGRIVSTKPLYVALAQRK 371
Score = 300 (110.7 bits), Expect = 8.0e-26, P = 8.0e-26
Identities = 78/256 (30%), Positives = 126/256 (49%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L P V L +F G + +RV R+ S G+A I F PA+A++A M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTM 72
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N +I +P+ I + + PG R VG VF+KNL E++D + L F FG
Sbjct: 73 NFEVIKGRPIRIMWSQRDPGLRKSGVG---------NVFIKNLDESIDNKALYDTFSAFG 123
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXX 215
NI+ K+V DE+G S+G+GF+ F + +AA +AI MNG ++ FV
Sbjct: 124 NILSCKVVCDEHG-SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVG--HFKSRRERE 180
Query: 216 XXXXXXLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIE 270
+++ +++ N ++++ E+F+ FG S ++ D + GF+
Sbjct: 181 LEYGAKVME---FTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDTGRSRGFGFVN 237
Query: 271 FIMPKHATHAVSTMNG 286
+ + A AVS MNG
Sbjct: 238 YGNHEEAQKAVSEMNG 253
Score = 237 (88.5 bits), Expect = 5.2e-19, P = 5.2e-19
Identities = 55/179 (30%), Positives = 96/179 (53%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+++ N +D++ L F FG V+V + SRGF + + EA+KA EMN
Sbjct: 193 VYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDTGRSRGFGFVNYGNHEEAQKAVSEMN 252
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKV--------FVKNLVETVDEEELK 148
G + + + + + K +R + + +Q K++++ +VKNL + +D++ L+
Sbjct: 253 GKEVNGRMIYVGRAQ-KRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLR 311
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
F +G I K++ E G SKGFGF+ F S + A KA+ EMNGR++ +V+LA+
Sbjct: 312 KEFSPYGTITSAKVMT-EGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQ 369
Score = 149 (57.5 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 27/82 (32%), Positives = 48/82 (58%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L+V NL+ +D+ L EF +GT+ +V + S+GF + F++P EA KA EMN
Sbjct: 296 LYVKNLDDGIDDDRLRKEFSPYGTITSAKVM-TEGGHSKGFGFVCFSSPEEATKAVTEMN 354
Query: 97 GHLIGSKPVIITFVELKPGQRS 118
G ++ +KP+ + + K +++
Sbjct: 355 GRIVSTKPLYVALAQRKEERKA 376
>UNIPROTKB|Q6GR16 [details] [associations]
symbol:epabp-b "Embryonic polyadenylate-binding protein B"
species:8355 "Xenopus laevis" [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043009
"chordate embryonic development" evidence=ISS] [GO:0043621 "protein
self-association" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0043621 GO:GO:0048255 GO:GO:0043009 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:BC071118
RefSeq:NP_001085351.1 UniGene:Xl.3974 ProteinModelPortal:Q6GR16
SMR:Q6GR16 PRIDE:Q6GR16 GeneID:443777 KEGG:xla:443777 CTD:443777
Xenbase:XB-GENE-6251876 GO:GO:0031370 Uniprot:Q6GR16
Length = 629
Score = 372 (136.0 bits), Expect = 1.0e-33, P = 1.0e-33
Identities = 84/273 (30%), Positives = 148/273 (54%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+DN+AL + F FG + +V ++ SRG+ + F T A +A MNG
Sbjct: 103 IKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYG-SRGYGFVHFETQEAANRAIQTMNGM 161
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ + V + + + +R G + ++ V++KN E +D++ LK F FGN +
Sbjct: 162 LLNDRKVFVGHFKSRR-ERELEYGAKVMEFTN--VYIKNFGEDMDDKRLKEIFSAFGNTL 218
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXXXXX 218
VK++ D +G+S+GFGF+ + +++ A+KA+ EMNG+ + +V A+
Sbjct: 219 SVKVMMDNSGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVGRAQKRIERQGELKR 278
Query: 219 XXXLLQPARKNK-----IFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGFI 269
++ R N+ ++V NL I++ + F+ +GTITS+ ++++ K GF+
Sbjct: 279 KFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSTKVMTEGGHSKGFGFV 338
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F P+ AT AV+ MNG + +KPL V L+ K
Sbjct: 339 CFSSPEEATKAVTEMNGRIVSTKPLYVALAQRK 371
Score = 286 (105.7 bits), Expect = 2.6e-24, P = 2.6e-24
Identities = 74/256 (28%), Positives = 126/256 (49%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKKARVEM 95
L++ +L P V L +F G + +RV R+ S G+A I F PA+A++A M
Sbjct: 13 LYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTM 72
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N +I +P+ I + + PG R VG VF+KNL +++D + L F FG
Sbjct: 73 NFEVIKGRPIRIMWSQRDPGLRKSGVG---------NVFIKNLDDSIDNKALYDTFSAFG 123
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXX 215
+I+ K+V DE G S+G+GF+ F + +AA +AI MNG ++ FV
Sbjct: 124 DILSCKVVCDEYG-SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVG--HFKSRRERE 180
Query: 216 XXXXXXLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIE 270
+++ +++ N ++++ +E+F+ FG S ++ D + GF+
Sbjct: 181 LEYGAKVME---FTNVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDNSGRSRGFGFVN 237
Query: 271 FIMPKHATHAVSTMNG 286
+ + A AV+ MNG
Sbjct: 238 YGNHEEAQKAVTEMNG 253
Score = 242 (90.2 bits), Expect = 1.5e-19, P = 1.5e-19
Identities = 56/179 (31%), Positives = 97/179 (54%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+++ N +D++ L F FG V+V + + SRGF + + EA+KA EMN
Sbjct: 193 VYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDNSGRSRGFGFVNYGNHEEAQKAVTEMN 252
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKV--------FVKNLVETVDEEELK 148
G + + V + + K +R + + +Q K++++ +VKNL + +D++ L+
Sbjct: 253 GKEVNGRMVYVGRAQ-KRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLR 311
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
F +G I K++ E G SKGFGF+ F S + A KA+ EMNGR++ +V+LA+
Sbjct: 312 KEFSPYGTITSTKVMT-EGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQ 369
Score = 149 (57.5 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 27/82 (32%), Positives = 48/82 (58%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L+V NL+ +D+ L EF +GT+ +V + S+GF + F++P EA KA EMN
Sbjct: 296 LYVKNLDDGIDDDRLRKEFSPYGTITSTKVM-TEGGHSKGFGFVCFSSPEEATKAVTEMN 354
Query: 97 GHLIGSKPVIITFVELKPGQRS 118
G ++ +KP+ + + K +++
Sbjct: 355 GRIVSTKPLYVALAQRKEERKA 376
>UNIPROTKB|Q98SP8 [details] [associations]
symbol:epabp-a "Embryonic polyadenylate-binding protein A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043009 "chordate
embryonic development" evidence=IEP] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0043009 GO:GO:0060212 GO:GO:0008143
HOVERGEN:HBG002295 EMBL:AF338225 EMBL:BC080020
RefSeq:NP_001082094.1 UniGene:Xl.777 ProteinModelPortal:Q98SP8
SMR:Q98SP8 PRIDE:Q98SP8 GeneID:398221 KEGG:xla:398221 CTD:398221
Xenbase:XB-GENE-5742498 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 Uniprot:Q98SP8
Length = 629
Score = 371 (135.7 bits), Expect = 1.4e-33, P = 1.4e-33
Identities = 83/273 (30%), Positives = 149/273 (54%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+DN+AL + F FG + +V +++ SRG+ + F T A +A MNG
Sbjct: 103 IKNLDESIDNKALYDTFSAFGNILSCKVVCDEHG-SRGYGFVHFETHEAANRAIQTMNGM 161
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ + V + + + +R G + ++ V++KN E +D++ L+ F FGN +
Sbjct: 162 LLNDRKVFVGHFKSRR-ERELEYGAKVMEFTN--VYIKNFGEDMDDKRLREIFSAFGNTL 218
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXXXXX 218
VK++ D++G+S+GFGF+ + +++ A+KA+ EMNG+ + +V A+
Sbjct: 219 SVKVMMDDSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQSELKR 278
Query: 219 XXXLLQPARKNK-----IFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGFI 269
++ R N+ ++V NL I++ + F +GTITS+ ++++ K GF+
Sbjct: 279 KFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFLPYGTITSAKVMTEGGHSKGFGFV 338
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F P+ AT AV+ MNG + +KPL V L+ K
Sbjct: 339 CFSSPEEATKAVTEMNGRIVSTKPLYVALAQRK 371
Score = 296 (109.3 bits), Expect = 2.2e-25, P = 2.2e-25
Identities = 76/256 (29%), Positives = 126/256 (49%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKKARVEM 95
L++ +L P V L +F G + +RV R+ S +A I F PA+A++A M
Sbjct: 13 LYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALDTM 72
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N +I +P+ I + + PG R VG VF+KNL E++D + L F FG
Sbjct: 73 NFEVIKGRPIRIMWSQRDPGLRKSGVG---------NVFIKNLDESIDNKALYDTFSAFG 123
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXX 215
NI+ K+V DE+G S+G+GF+ F +++AA +AI MNG ++ FV
Sbjct: 124 NILSCKVVCDEHG-SRGYGFVHFETHEAANRAIQTMNGMLLNDRKVFVG--HFKSRRERE 180
Query: 216 XXXXXXLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIE 270
+++ +++ N ++++ E+F+ FG S ++ D + GF+
Sbjct: 181 LEYGAKVME---FTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDSGRSRGFGFVN 237
Query: 271 FIMPKHATHAVSTMNG 286
+ + A AVS MNG
Sbjct: 238 YGNHEEAQKAVSEMNG 253
Score = 244 (91.0 bits), Expect = 9.2e-20, P = 9.2e-20
Identities = 55/179 (30%), Positives = 98/179 (54%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+++ N +D++ L F FG V+V + + SRGF + + EA+KA EMN
Sbjct: 193 VYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDSGRSRGFGFVNYGNHEEAQKAVSEMN 252
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKV--------FVKNLVETVDEEELK 148
G + + + + + K +R + + +Q K++++ +VKNL + +D++ L+
Sbjct: 253 GKEVNGRMIYVGRAQ-KRIERQSELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLR 311
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
F+ +G I K++ E G SKGFGF+ F S + A KA+ EMNGR++ +V+LA+
Sbjct: 312 KEFLPYGTITSAKVMT-EGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQ 369
Score = 147 (56.8 bits), Expect = 2.7e-07, P = 2.7e-07
Identities = 27/82 (32%), Positives = 48/82 (58%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L+V NL+ +D+ L EF +GT+ +V + S+GF + F++P EA KA EMN
Sbjct: 296 LYVKNLDDGIDDDRLRKEFLPYGTITSAKVM-TEGGHSKGFGFVCFSSPEEATKAVTEMN 354
Query: 97 GHLIGSKPVIITFVELKPGQRS 118
G ++ +KP+ + + K +++
Sbjct: 355 GRIVSTKPLYVALAQRKEERKA 376
>RGD|1310759 [details] [associations]
symbol:Pabpc2 "poly(A) binding protein, cytoplasmic 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1310759
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:CH473974 GeneTree:ENSGT00640000091232 IPI:IPI00200243
RefSeq:NP_001099621.1 UniGene:Rn.127161 Ensembl:ENSRNOT00000019467
GeneID:291615 KEGG:rno:291615 UCSC:RGD:1310759 CTD:18459
OMA:VSEMNGR OrthoDB:EOG4BK55N NextBio:632859 Uniprot:D4A233
Length = 630
Score = 371 (135.7 bits), Expect = 1.4e-33, P = 1.4e-33
Identities = 88/274 (32%), Positives = 148/274 (54%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL ++DN+AL + F FG + +V ++N S+G + F T A++A +MNG
Sbjct: 103 IKNLNKTIDNKALYDTFSAFGNILSCKVVCDENG-SKGHGFVHFETEEAAERAIEKMNGM 161
Query: 99 LIGSKPVII-TFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNI 157
L+ + V + F K +R +G K++ V++KN + +D++ L F +FG +
Sbjct: 162 LLNDRKVFVGQFKSRK--EREAELGTRTKEFTN--VYIKNFGDRMDDKTLNGLFGRFGQV 217
Query: 158 IEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXXXX 217
+ VK++ DE GKSKGFGF+ F ++ A+KA+ EMNG+ + +V A+
Sbjct: 218 LSVKVMTDEGGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYVGPAQKKVDRHIELK 277
Query: 218 XXXXLLQPARKNK-----IFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGF 268
+ R + ++V NL I++ ++ F+ FGTITS+ ++++ K GF
Sbjct: 278 RKFEQVTQDRGIRYQGINLYVKNLDDGIDDERLQKEFSPFGTITSTKVMTEGGRSKGFGF 337
Query: 269 IEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
+ F P+ AT AVS MNG + +KPL V L+ K
Sbjct: 338 VCFSSPEEATKAVSEMNGRIVATKPLYVALAQRK 371
Score = 310 (114.2 bits), Expect = 6.5e-27, P = 6.5e-27
Identities = 85/266 (31%), Positives = 127/266 (47%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L P V L +F G + +RV R+ S G+A + F PA+A++A M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADAERALDTM 72
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N +I KPV I + + P R VG VF+KNL +T+D + L F FG
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRRSGVG---------NVFIKNLNKTIDNKALYDTFSAFG 123
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXX 215
NI+ K+V DENG SKG GF+ F + +AAE+AI +MNG ++ FV +
Sbjct: 124 NILSCKVVCDENG-SKGHGFVHFETEEAAERAIEKMNGMLLNDRKVFVGQFKSRKEREAE 182
Query: 216 XXXXXXLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIE 270
+ +++ N +++ LF RFG + S +++D K GF+
Sbjct: 183 LGT-----RTKEFTNVYIKNFGDRMDDKTLNGLFGRFGQVLSVKVMTDEGGKSKGFGFVS 237
Query: 271 FIMPKHATHAVSTMNGHVFKSKPLKV 296
F + A AV MNG K + V
Sbjct: 238 FERHEDAQKAVDEMNGKELNGKHIYV 263
Score = 244 (91.0 bits), Expect = 9.2e-20, P = 9.2e-20
Identities = 58/180 (32%), Positives = 101/180 (56%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+++ N +D++ L F +FG + V+V ++ +S+GF + F +A+KA EMN
Sbjct: 193 VYIKNFGDRMDDKTLNGLFGRFGQVLSVKVMTDEGGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 97 GHLIGSKPVII--------TFVELKPGQRSKPVGPEEK-QYKKDKVFVKNLVETVDEEEL 147
G + K + + +ELK ++ + V + +Y+ ++VKNL + +D+E L
Sbjct: 253 GKELNGKHIYVGPAQKKVDRHIELK--RKFEQVTQDRGIRYQGINLYVKNLDDGIDDERL 310
Query: 148 KSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
+ F FG I K++ E G+SKGFGF+ F S + A KA+ EMNGR++ +V+LA+
Sbjct: 311 QKEFSPFGTITSTKVMT-EGGRSKGFGFVCFSSPEEATKAVSEMNGRIVATKPLYVALAQ 369
>UNIPROTKB|Q96DU9 [details] [associations]
symbol:PABPC5 "Polyadenylate-binding protein 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471115 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AJ278963 EMBL:AK290105
EMBL:AL662874 EMBL:BC063113 EMBL:AL122118 IPI:IPI00061206
PIR:T34543 RefSeq:NP_543022.1 UniGene:Hs.246590
ProteinModelPortal:Q96DU9 SMR:Q96DU9 IntAct:Q96DU9 STRING:Q96DU9
PhosphoSite:Q96DU9 DMDM:28201851 PaxDb:Q96DU9 PRIDE:Q96DU9
DNASU:140886 Ensembl:ENST00000312600 GeneID:140886 KEGG:hsa:140886
UCSC:uc004efg.3 CTD:140886 GeneCards:GC0XP090689 HGNC:HGNC:13629
HPA:HPA000164 HPA:HPA000165 MIM:300407 neXtProt:NX_Q96DU9
PharmGKB:PA32884 InParanoid:Q96DU9 OMA:FSEYGPT PhylomeDB:Q96DU9
GenomeRNAi:140886 NextBio:84542 ArrayExpress:Q96DU9 Bgee:Q96DU9
CleanEx:HS_PABPC5 Genevestigator:Q96DU9 GermOnline:ENSG00000174740
Uniprot:Q96DU9
Length = 382
Score = 364 (133.2 bits), Expect = 2.0e-33, P = 2.0e-33
Identities = 86/271 (31%), Positives = 153/271 (56%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S+DN+AL F FG + +V + N S+G+A + F++ A A +A MN
Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMN 166
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G + ++ V + + P +R+ V ++ + VFVKN+ + +D+E+LK F ++G
Sbjct: 167 GVRLNNRQVYVGRFKF-PEERAAEVRTRDRATFTN-VFVKNIGDDIDDEKLKELFCEYGP 224
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXXX 216
VK++RD +GKSKGFGF+++ +++AA+KA+++++G+ I +V A+
Sbjct: 225 TESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAEL 284
Query: 217 XXXXXLLQPARKNK-----IFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIG 267
L+ K++ I++ NL IN+ + +E F+ FG+I+ + ++ + K G
Sbjct: 285 RRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGKGFG 344
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKVTL 298
+ F + AT AV MNG + SKPL VTL
Sbjct: 345 VVCFSSFEEATKAVDEMNGRIVGSKPLHVTL 375
Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
Identities = 78/266 (29%), Positives = 123/266 (46%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESR-GFAIIVFNTPAEAKKARVEM 95
L+V +L+P V L +F+ G LR R+ R+ S G+ + F PA+A+ A M
Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI KP + + + R VG +F+KNL +++D L F FG
Sbjct: 80 NFDLINGKPFRLMWSQPDDRLRKSGVG---------NIFIKNLDKSIDNRALFYLFSAFG 130
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXX 215
NI+ K+V D+NG SKG+ ++ F S AA +AI MNG + + +V +
Sbjct: 131 NILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAE 189
Query: 216 XXXXXXLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIE 270
A +FV N+ +I++ + +ELF +G S ++ D K GF+
Sbjct: 190 VRTRDR----ATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVR 245
Query: 271 FIMPKHATHAVSTMNGHVFKSKPLKV 296
+ + A AV ++G K L V
Sbjct: 246 YETHEAAQKAVLDLHGKSIDGKVLYV 271
Score = 230 (86.0 bits), Expect = 6.6e-19, P = 6.6e-19
Identities = 54/176 (30%), Positives = 99/176 (56%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
V N+ +D++ L F ++G V+V R+ + +S+GF + + T A+KA ++++G
Sbjct: 203 VKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGK 262
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDK-------VFVKNLVETVDEEELKSHF 151
I K + + + K + ++ E+ K+K +++KNL ET+++E+LK F
Sbjct: 263 SIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEF 322
Query: 152 IKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
FG+I K++ E G+ KGFG + F S++ A KA+ EMNGR++ V+L +
Sbjct: 323 SSFGSISRAKVMM-EVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQ 377
>UNIPROTKB|E1BWJ7 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 GeneTree:ENSGT00640000091232
EMBL:AADN02019326 EMBL:AADN02019327 IPI:IPI00570679
RefSeq:XP_417367.2 ProteinModelPortal:E1BWJ7
Ensembl:ENSGALT00000006565 GeneID:419189 KEGG:gga:419189
OMA:QTISARV NextBio:20822287 Uniprot:E1BWJ7
Length = 632
Score = 367 (134.2 bits), Expect = 3.8e-33, P = 3.8e-33
Identities = 83/273 (30%), Positives = 144/273 (52%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+DN+AL + F FG + +V ++N SRG + F T A +A MNG
Sbjct: 103 IKNLDDSIDNKALYDTFSAFGNILSCKVVCDENG-SRGHGFVHFETQEAATRAIQTMNGM 161
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ + V + + + +R G ++ V++KN + +D+ L+ F +FG +
Sbjct: 162 LLNDRKVFVGHFKSRK-EREAEFGARAMEFTN--VYIKNFGDDMDDNRLREIFSRFGKTL 218
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXXXXX 218
VK++ D G+SKGFGF+ F ++ A+KA+ +MNG+ I +V A+
Sbjct: 219 SVKVMMDHTGRSKGFGFVNFEKHEEAQKAVADMNGKEINGRMVYVGRAQKRLERQSELKR 278
Query: 219 XXXLLQPARKNK-----IFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGFI 269
++ R ++ ++V NL I++ + F+ +GTITS+ ++++ K GF+
Sbjct: 279 KFEQMKQERVSRYQGVNLYVKNLDDGIDDERLRKEFSPYGTITSAKVMTEGGHSKGFGFV 338
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F P+ AT AV+ MNG + +KPL V L+ K
Sbjct: 339 CFSSPEEATKAVTEMNGRIVSTKPLYVALAQRK 371
Score = 308 (113.5 bits), Expect = 1.1e-26, P = 1.1e-26
Identities = 81/256 (31%), Positives = 127/256 (49%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L P V L +F G + +RV R+ + S G+A I F PA+A++A M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVASRRSLGYAYINFQQPADAERALDTM 72
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N +I +PV I + + PG R VG VF+KNL +++D + L F FG
Sbjct: 73 NFEVIKGRPVRIMWSQRDPGLRKSGVG---------NVFIKNLDDSIDNKALYDTFSAFG 123
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXX 215
NI+ K+V DENG S+G GF+ F + +AA +AI MNG ++ FV
Sbjct: 124 NILSCKVVCDENG-SRGHGFVHFETQEAATRAIQTMNGMLLNDRKVFVG--HFKSRKERE 180
Query: 216 XXXXXXLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIE 270
++ +++ N +++++ E+F+RFG S ++ D K GF+
Sbjct: 181 AEFGARAME---FTNVYIKNFGDDMDDNRLREIFSRFGKTLSVKVMMDHTGRSKGFGFVN 237
Query: 271 FIMPKHATHAVSTMNG 286
F + A AV+ MNG
Sbjct: 238 FEKHEEAQKAVADMNG 253
Score = 244 (91.0 bits), Expect = 9.3e-20, P = 9.3e-20
Identities = 58/179 (32%), Positives = 96/179 (53%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+++ N +D+ L F +FG V+V + S+GF + F EA+KA +MN
Sbjct: 193 VYIKNFGDDMDDNRLREIFSRFGKTLSVKVMMDHTGRSKGFGFVNFEKHEEAQKAVADMN 252
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKV--------FVKNLVETVDEEELK 148
G I + V + + K +R + + +Q K+++V +VKNL + +D+E L+
Sbjct: 253 GKEINGRMVYVGRAQ-KRLERQSELKRKFEQMKQERVSRYQGVNLYVKNLDDGIDDERLR 311
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
F +G I K++ E G SKGFGF+ F S + A KA+ EMNGR++ +V+LA+
Sbjct: 312 KEFSPYGTITSAKVMT-EGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQ 369
Score = 151 (58.2 bits), Expect = 9.7e-08, P = 9.7e-08
Identities = 27/82 (32%), Positives = 49/82 (59%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L+V NL+ +D++ L EF +GT+ +V + S+GF + F++P EA KA EMN
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPYGTITSAKVM-TEGGHSKGFGFVCFSSPEEATKAVTEMN 354
Query: 97 GHLIGSKPVIITFVELKPGQRS 118
G ++ +KP+ + + K +++
Sbjct: 355 GRIVSTKPLYVALAQRKEERKA 376
>UNIPROTKB|F1SDR6 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:CU633343 Ensembl:ENSSSCT00000008080 Uniprot:F1SDR6
Length = 608
Score = 366 (133.9 bits), Expect = 4.0e-33, P = 4.0e-33
Identities = 87/273 (31%), Positives = 148/273 (54%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NLE S+DN+AL + F FG + +V + + SRGF + F T A+ A MNG
Sbjct: 103 IKNLEDSIDNKALYDTFSTFGNILSCKVVCDDHG-SRGFGFVHFETHEAAQNAIRTMNGM 161
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ + V + + + +R +G ++ ++VKNL VDE L+ F +FG I+
Sbjct: 162 LLNDRKVFVGHFKSRR-EREAELGARALEFTN--IYVKNLHVDVDERCLQDLFSQFGKIL 218
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXXXXX 218
VK++RD++G S+GFGF+ F ++ A+KA+ +MNG+ + +V A+
Sbjct: 219 SVKVMRDDSGHSRGFGFVNFEKHEDAQKAVTDMNGKEVSGRLLYVGRAQKRVERQNELKR 278
Query: 219 XXXLLQPARKNK-----IFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGFI 269
++ R + ++V NL +I++ + + FA +G ITS+ ++++ K GF+
Sbjct: 279 RFEQMKQDRLTRYQGVNLYVKNLDDSIDDEKLRKEFAPYGMITSAKVMTEGGHSKGFGFV 338
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F P+ AT AV+ MNG + +KPL V L+ K
Sbjct: 339 CFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 371
Score = 309 (113.8 bits), Expect = 7.5e-27, P = 7.5e-27
Identities = 85/266 (31%), Positives = 132/266 (49%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L P V L +F G + +RV R+ S G+A I F PA+A++A M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N +I +P+ I + + PG R VG VF+KNL +++D + L F FG
Sbjct: 73 NFEVIKGQPIRIMWSQRDPGLRKSGVG---------NVFIKNLEDSIDNKALYDTFSTFG 123
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXX 215
NI+ K+V D++G S+GFGF+ F +++AA+ AI MNG ++ FV
Sbjct: 124 NILSCKVVCDDHG-SRGFGFVHFETHEAAQNAIRTMNGMLLNDRKVFVG--HFKSRRERE 180
Query: 216 XXXXXXLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDK--H---IGFIE 270
L+ I+V NL +++ ++LF++FG I S ++ D H GF+
Sbjct: 181 AELGARALE---FTNIYVKNLHVDVDERCLQDLFSQFGKILSVKVMRDDSGHSRGFGFVN 237
Query: 271 FIMPKHATHAVSTMNGHVFKSKPLKV 296
F + A AV+ MNG + L V
Sbjct: 238 FEKHEDAQKAVTDMNGKEVSGRLLYV 263
Score = 262 (97.3 bits), Expect = 9.6e-22, P = 9.6e-22
Identities = 60/179 (33%), Positives = 102/179 (56%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
++V NL VD + L + F +FG + V+V R+ + SRGF + F +A+KA +MN
Sbjct: 193 IYVKNLHVDVDERCLQDLFSQFGKILSVKVMRDDSGHSRGFGFVNFEKHEDAQKAVTDMN 252
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKV--------FVKNLVETVDEEELK 148
G + + + + + K +R + +Q K+D++ +VKNL +++D+E+L+
Sbjct: 253 GKEVSGRLLYVGRAQ-KRVERQNELKRRFEQMKQDRLTRYQGVNLYVKNLDDSIDDEKLR 311
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
F +G I K++ E G SKGFGF+ F S + A KA+ EMNGR++ +V+LA+
Sbjct: 312 KEFAPYGMITSAKVMT-EGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 369
Score = 154 (59.3 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 28/82 (34%), Positives = 50/82 (60%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L+V NL+ S+D++ L EF +G + +V + S+GF + F++P EA KA EMN
Sbjct: 296 LYVKNLDDSIDDEKLRKEFAPYGMITSAKVM-TEGGHSKGFGFVCFSSPEEATKAVTEMN 354
Query: 97 GHLIGSKPVIITFVELKPGQRS 118
G ++G+KP+ + + K +++
Sbjct: 355 GRIVGTKPLYVALAQRKEERKA 376
>UNIPROTKB|F1N4Q4 [details] [associations]
symbol:PABPC5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
KO:K13126 TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232
CTD:140886 OMA:FSEYGPT EMBL:DAAA02070194 IPI:IPI00700504
RefSeq:NP_001179218.1 UniGene:Bt.60242 ProteinModelPortal:F1N4Q4
Ensembl:ENSBTAT00000026566 GeneID:511286 KEGG:bta:511286
NextBio:20869865 Uniprot:F1N4Q4
Length = 382
Score = 358 (131.1 bits), Expect = 8.5e-33, P = 8.5e-33
Identities = 86/271 (31%), Positives = 154/271 (56%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S+DN+AL F FG++ +V + N S+G+A + F++ A A +A MN
Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGSILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMN 166
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G + ++ V + + P +R+ V +K + VFVKN + +D+++LK F ++G
Sbjct: 167 GVRLNNRQVYVGRFKF-PEERAAEVRTRDKATFTN-VFVKNFGDDMDDDKLKELFSEYGP 224
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXXX 216
VK++RD +GKSKGFGF+++ +++AA+KA+++++G+ I +V A+
Sbjct: 225 TESVKVIRDSSGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAEL 284
Query: 217 XXXXXLLQPARKNK-----IFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIG 267
L+ K++ I++ NL I++ + +E F+ FG+I+ + ++ + K G
Sbjct: 285 RRRFERLRLKEKSRPPGVPIYIKNLDETIDDEKLKEEFSSFGSISRAKVMVEVGQGKGFG 344
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKVTL 298
I F + AT AV MNG + SKPL+VTL
Sbjct: 345 VICFSSFEEATKAVDEMNGRIVGSKPLQVTL 375
Score = 259 (96.2 bits), Expect = 2.6e-22, P = 2.6e-22
Identities = 75/266 (28%), Positives = 123/266 (46%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESR-GFAIIVFNTPAEAKKARVEM 95
L+V +L+P V L +F+ G LR R+ R+ S G+ + F PA+A+ A M
Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI KP + + + R +G +F+KNL +++D L F FG
Sbjct: 80 NFDLINGKPFRLMWSQPDDRLRKSGIG---------NIFIKNLDKSIDNRALFYLFSAFG 130
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXX 215
+I+ K+V D+NG SKG+ ++ F S AA +AI MNG + + +V +
Sbjct: 131 SILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAE 189
Query: 216 XXXXXXLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIE 270
A +FV N ++++ + +ELF+ +G S ++ D K GF+
Sbjct: 190 VRTR----DKATFTNVFVKNFGDDMDDDKLKELFSEYGPTESVKVIRDSSGKSKGFGFVR 245
Query: 271 FIMPKHATHAVSTMNGHVFKSKPLKV 296
+ + A AV ++G K L V
Sbjct: 246 YETHEAAQKAVLDLHGKSIDGKVLYV 271
Score = 230 (86.0 bits), Expect = 6.6e-19, P = 6.6e-19
Identities = 56/176 (31%), Positives = 97/176 (55%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
V N +D+ L F ++G V+V R+ + +S+GF + + T A+KA ++++G
Sbjct: 203 VKNFGDDMDDDKLKELFSEYGPTESVKVIRDSSGKSKGFGFVRYETHEAAQKAVLDLHGK 262
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDK-------VFVKNLVETVDEEELKSHF 151
I K + + + K + ++ E+ K+K +++KNL ET+D+E+LK F
Sbjct: 263 SIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETIDDEKLKEEF 322
Query: 152 IKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
FG+I K++ E G+ KGFG I F S++ A KA+ EMNGR++ V+L +
Sbjct: 323 SSFGSISRAKVMV-EVGQGKGFGVICFSSFEEATKAVDEMNGRIVGSKPLQVTLGQ 377
>UNIPROTKB|Q4VXU2 [details] [associations]
symbol:PABPC1L "Polyadenylate-binding protein 1-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 EMBL:AL008725
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 HOGENOM:HOG000217922 OrthoDB:EOG4K6G3V
HSSP:P11940 EMBL:AL109839 IPI:IPI00556259 RefSeq:NP_001118228.1
UniGene:Hs.641481 ProteinModelPortal:Q4VXU2 SMR:Q4VXU2
IntAct:Q4VXU2 STRING:Q4VXU2 PhosphoSite:Q4VXU2 DMDM:74754038
PaxDb:Q4VXU2 PRIDE:Q4VXU2 Ensembl:ENST00000217073
Ensembl:ENST00000255136 GeneID:80336 KEGG:hsa:80336 UCSC:uc010ggv.1
GeneCards:GC20P043538 HGNC:HGNC:15797 neXtProt:NX_Q4VXU2
PharmGKB:PA162398552 InParanoid:Q4VXU2 OMA:MNFEMLK ChiTaRS:PABPC1L
GenomeRNAi:80336 NextBio:70904 ArrayExpress:Q4VXU2 Bgee:Q4VXU2
CleanEx:HS_PABPC1L Genevestigator:Q4VXU2 Uniprot:Q4VXU2
Length = 614
Score = 362 (132.5 bits), Expect = 1.2e-32, P = 1.2e-32
Identities = 84/275 (30%), Positives = 150/275 (54%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NLE S+DN+AL + F FG + +VA +++ SRGF + F T A++A MN
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMN 159
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G L+ + V + + + +R +G ++ ++VKNL VDE+ L+ F +FG
Sbjct: 160 GMLLNDRKVFVGHFKSRR-EREAELGARALEFTN--IYVKNLPVDVDEQGLQDLFSQFGK 216
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXXX 216
++ VK++RD +G S+ FGF+ F ++ A+KA++ MNG+ + + A+
Sbjct: 217 MLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNEL 276
Query: 217 XXXXXLLQPARKNK-----IFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIG 267
++ R + ++V NL +I++ + + F+ +G ITS+ ++++ K G
Sbjct: 277 KRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTEGGHSKGFG 336
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F+ F P+ AT AV+ MNG + +KPL V L+ K
Sbjct: 337 FVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 371
Score = 313 (115.2 bits), Expect = 2.8e-27, P = 2.8e-27
Identities = 81/256 (31%), Positives = 129/256 (50%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L P V L +F G + +RV R+ S G+A I F PA+A++A M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N ++ +P+ I + + PG R VG +F+KNL +++D + L F FG
Sbjct: 73 NFEMLKGQPIRIMWSQRDPGLRKSGVG---------NIFIKNLEDSIDNKALYDTFSTFG 123
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXX 215
NI+ K+ DE+G S+GFGF+ F +++AA++AI MNG ++ FV
Sbjct: 124 NILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVG--HFKSRRERE 180
Query: 216 XXXXXXLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDK--H---IGFIE 270
L+ I+V NLP +++ ++LF++FG + S ++ D H GF+
Sbjct: 181 AELGARALE---FTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVN 237
Query: 271 FIMPKHATHAVSTMNG 286
F + A AV MNG
Sbjct: 238 FEKHEEAQKAVVHMNG 253
Score = 154 (59.3 bits), Expect = 4.3e-08, P = 4.3e-08
Identities = 28/82 (34%), Positives = 49/82 (59%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L+V NL+ S+D+ L EF +G + +V + S+GF + F++P EA KA EMN
Sbjct: 296 LYVKNLDDSIDDDKLRKEFSPYGVITSAKVM-TEGGHSKGFGFVCFSSPEEATKAVTEMN 354
Query: 97 GHLIGSKPVIITFVELKPGQRS 118
G ++G+KP+ + + K +++
Sbjct: 355 GRIVGTKPLYVALAQRKEERKA 376
>UNIPROTKB|J3KTH5 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126 TIGRFAMs:TIGR01628
EMBL:AC015631 UniGene:Hs.49889 HGNC:HGNC:31955
RefSeq:NP_001108206.2 ProteinModelPortal:J3KTH5
Ensembl:ENST00000529122 GeneID:132430 KEGG:hsa:132430 CTD:132430
Uniprot:J3KTH5
Length = 428
Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
Identities = 88/271 (32%), Positives = 141/271 (52%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+DN+ L F FG + +V + + S+G+A + F + A +A EMNG
Sbjct: 160 IKNLDKSIDNKTLYEHFSAFGKILSSKVMSD-DQGSKGYAFVHFQNQSAADRAIEEMNGK 218
Query: 99 LI-GSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNI 157
L+ G K + F K R + + ++ V++KN +D+E LK F K+G
Sbjct: 219 LLKGCKVFVGRFKNRK--DREAELRSKASEFTN--VYIKNFGGDMDDERLKDVFSKYGKT 274
Query: 158 IEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXXXX 217
+ VK++ D +GKSKGFGF+ F S++AA+KA+ EMNGR I FV A+
Sbjct: 275 LSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELK 334
Query: 218 XXXXLLQPARKN-----KIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGF 268
L+ R K+++ NL I++ + F+ FG+I+ ++ + K G
Sbjct: 335 QMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEEGQSKGFGL 394
Query: 269 IEFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299
I F P+ AT A++ MNG + SKPL + L+
Sbjct: 395 ICFSSPEDATKAMTEMNGRILGSKPLSIALA 425
Score = 257 (95.5 bits), Expect = 1.0e-21, P = 1.0e-21
Identities = 59/179 (32%), Positives = 106/179 (59%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+++ N +D++ L + F K+G V+V + + +S+GF + F++ AKKA EMN
Sbjct: 250 VYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMN 309
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKD--------KVFVKNLVETVDEEELK 148
G I + + + + K +R + +Q K++ K+++KNL +T+D+E+L+
Sbjct: 310 GRDINGQLIFVGRAQKKV-ERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLR 368
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
+ F FG+I VK++++E G+SKGFG I F S + A KA+ EMNGR++ ++LA+
Sbjct: 369 NEFSSFGSISRVKVMQEE-GQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSIALAQ 426
Score = 255 (94.8 bits), Expect = 1.7e-21, P = 1.7e-21
Identities = 68/256 (26%), Positives = 125/256 (48%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L V L +F G + +R+ R++ S G+A + F A+A+KA M
Sbjct: 70 LYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDTM 129
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N +I K + + + + R +G VF+KNL +++D + L HF FG
Sbjct: 130 NFDIIKGKSIRLMWSQRDAYLRRSGIG---------NVFIKNLDKSIDNKTLYEHFSAFG 180
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXX 215
I+ K++ D+ G SKG+ F+ F + AA++AI EMNG++++ FV +
Sbjct: 181 KILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAE 239
Query: 216 XXXXXXLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIE 270
+ + +++ N ++++ +++F+++G S +++D K GF+
Sbjct: 240 LRS-----KASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVS 294
Query: 271 FIMPKHATHAVSTMNG 286
F + A AV MNG
Sbjct: 295 FDSHEAAKKAVEEMNG 310
Score = 148 (57.2 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 45/169 (26%), Positives = 79/169 (46%)
Query: 127 QYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAE 185
+Y+ ++V +L V E+ L F G ++ ++I RD+ +S G+ ++ F A+
Sbjct: 64 KYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQ 123
Query: 186 KAIIEMNGRMIQHNSTFVSLAEIXXXXXXXXXXXXXLLQPARKNKIFVANLPSNINNSEF 245
KA+ MN +I+ S + ++ L+ + +F+ NL +I+N
Sbjct: 124 KALDTMNFDIIKGKSIRLMWSQ-----------RDAYLRRSGIGNVFIKNLDKSIDNKTL 172
Query: 246 EELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFK 290
E F+ FG I SS ++SD K F+ F A A+ MNG + K
Sbjct: 173 YEHFSAFGKILSSKVMSDDQGSKGYAFVHFQNQSAADRAIEEMNGKLLK 221
>UNIPROTKB|P0CB38 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01628 EMBL:AC015631
EMBL:BX648831 IPI:IPI00885166 UniGene:Hs.49889
ProteinModelPortal:P0CB38 SMR:P0CB38 PhosphoSite:P0CB38
DMDM:259515737 PaxDb:P0CB38 PRIDE:P0CB38 Ensembl:ENST00000421491
UCSC:uc010ioe.3 GeneCards:GC04M135117 HGNC:HGNC:31955
neXtProt:NX_P0CB38 eggNOG:NOG246493 OrthoDB:EOG4M398T NextBio:83098
Bgee:P0CB38 Genevestigator:P0CB38 Uniprot:P0CB38
Length = 370
Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
Identities = 88/271 (32%), Positives = 141/271 (52%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+DN+ L F FG + +V + + S+G+A + F + A +A EMNG
Sbjct: 102 IKNLDKSIDNKTLYEHFSAFGKILSSKVMSD-DQGSKGYAFVHFQNQSAADRAIEEMNGK 160
Query: 99 LI-GSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNI 157
L+ G K + F K R + + ++ V++KN +D+E LK F K+G
Sbjct: 161 LLKGCKVFVGRFKNRK--DREAELRSKASEFTN--VYIKNFGGDMDDERLKDVFSKYGKT 216
Query: 158 IEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXXXX 217
+ VK++ D +GKSKGFGF+ F S++AA+KA+ EMNGR I FV A+
Sbjct: 217 LSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELK 276
Query: 218 XXXXLLQPARKN-----KIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGF 268
L+ R K+++ NL I++ + F+ FG+I+ ++ + K G
Sbjct: 277 QMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEEGQSKGFGL 336
Query: 269 IEFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299
I F P+ AT A++ MNG + SKPL + L+
Sbjct: 337 ICFSSPEDATKAMTEMNGRILGSKPLSIALA 367
Score = 257 (95.5 bits), Expect = 4.3e-22, P = 4.3e-22
Identities = 59/179 (32%), Positives = 106/179 (59%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+++ N +D++ L + F K+G V+V + + +S+GF + F++ AKKA EMN
Sbjct: 192 VYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMN 251
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKD--------KVFVKNLVETVDEEELK 148
G I + + + + K +R + +Q K++ K+++KNL +T+D+E+L+
Sbjct: 252 GRDINGQLIFVGRAQKKV-ERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLR 310
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
+ F FG+I VK++++E G+SKGFG I F S + A KA+ EMNGR++ ++LA+
Sbjct: 311 NEFSSFGSISRVKVMQEE-GQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSIALAQ 368
Score = 255 (94.8 bits), Expect = 7.0e-22, P = 7.0e-22
Identities = 68/256 (26%), Positives = 125/256 (48%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L V L +F G + +R+ R++ S G+A + F A+A+KA M
Sbjct: 12 LYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDTM 71
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N +I K + + + + R +G VF+KNL +++D + L HF FG
Sbjct: 72 NFDIIKGKSIRLMWSQRDAYLRRSGIG---------NVFIKNLDKSIDNKTLYEHFSAFG 122
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXX 215
I+ K++ D+ G SKG+ F+ F + AA++AI EMNG++++ FV +
Sbjct: 123 KILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAE 181
Query: 216 XXXXXXLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIE 270
+ + +++ N ++++ +++F+++G S +++D K GF+
Sbjct: 182 LRS-----KASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVS 236
Query: 271 FIMPKHATHAVSTMNG 286
F + A AV MNG
Sbjct: 237 FDSHEAAKKAVEEMNG 252
Score = 148 (57.2 bits), Expect = 8.3e-08, P = 8.3e-08
Identities = 45/169 (26%), Positives = 79/169 (46%)
Query: 127 QYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAE 185
+Y+ ++V +L V E+ L F G ++ ++I RD+ +S G+ ++ F A+
Sbjct: 6 KYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQ 65
Query: 186 KAIIEMNGRMIQHNSTFVSLAEIXXXXXXXXXXXXXLLQPARKNKIFVANLPSNINNSEF 245
KA+ MN +I+ S + ++ L+ + +F+ NL +I+N
Sbjct: 66 KALDTMNFDIIKGKSIRLMWSQ-----------RDAYLRRSGIGNVFIKNLDKSIDNKTL 114
Query: 246 EELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFK 290
E F+ FG I SS ++SD K F+ F A A+ MNG + K
Sbjct: 115 YEHFSAFGKILSSKVMSDDQGSKGYAFVHFQNQSAADRAIEEMNGKLLK 163
>TAIR|locus:2124261 [details] [associations]
symbol:PAB2 "AT4G34110" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0009651
"response to salt stress" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006486 "protein glycosylation" evidence=RCA] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR002343 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PRINTS:PR00961
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
GO:GO:0009651 Gene3D:3.30.70.330 GO:GO:0003743 EMBL:AL021961
EMBL:AL161584 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:L19418
EMBL:BT002354 IPI:IPI00532109 PIR:T05425 RefSeq:NP_195137.5
UniGene:At.25252 ProteinModelPortal:P42731 SMR:P42731 IntAct:P42731
STRING:P42731 PaxDb:P42731 PRIDE:P42731 ProMEX:P42731
EnsemblPlants:AT4G34110.1 GeneID:829557 KEGG:ath:AT4G34110
TAIR:At4g34110 InParanoid:P42731 OMA:FDPIKGR PhylomeDB:P42731
ProtClustDB:CLSN2714507 Genevestigator:P42731 GermOnline:AT4G34110
Uniprot:P42731
Length = 629
Score = 352 (129.0 bits), Expect = 1.7e-31, P = 1.7e-31
Identities = 83/276 (30%), Positives = 147/276 (53%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S+D++AL + F FG + +VA + + +S+G+ + + A+KA ++N
Sbjct: 126 IFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLN 185
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G L+ K V + P R + + K V+VKNL E+ +++LK+ F ++G
Sbjct: 186 GMLLNDKQVYVG-----PFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGK 240
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXXX 216
I +++D GKSKGFGF+ F + A +A+ +NG +V A+
Sbjct: 241 ITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETEL 300
Query: 217 XXXXX--LLQPARK---NKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHI 266
L + A K + ++V NL +I++ + +E+F+ FGT+TSS ++ D K
Sbjct: 301 RVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGS 360
Query: 267 GFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ F P+ AT A+S ++G + +SKPL V ++ K
Sbjct: 361 GFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQRK 396
Score = 301 (111.0 bits), Expect = 6.2e-26, P = 6.2e-26
Identities = 76/277 (27%), Positives = 129/277 (46%)
Query: 22 ARSXXXXXXXXXXXXLHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAII 80
A S L+V +L+ +V + L + F + GT+ VRV R+ S G+ +
Sbjct: 23 ATSGGATATQFGNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYV 82
Query: 81 VFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVE 140
F P +A +A E+N + KP+ + + P R G +F+KNL E
Sbjct: 83 NFTNPQDAARAIQELNYIPLYGKPIRVMYSHRDPSVRRSGAG---------NIFIKNLDE 133
Query: 141 TVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNS 200
++D + L F FGNI+ K+ D +G+SKG+GF+Q+ + ++A+KAI ++NG ++
Sbjct: 134 SIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQ 193
Query: 201 TFVSLAEIXXXXXXXXXXXXXLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSL 260
+V + ++V NL + + + + F +G ITS+ +
Sbjct: 194 VYVG-------PFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVV 246
Query: 261 VSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSK 292
+ D K GF+ F A AV ++NGH F K
Sbjct: 247 MKDGEGKSKGFGFVNFENADDAARAVESLNGHKFDDK 283
Score = 150 (57.9 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 29/81 (35%), Positives = 48/81 (59%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L+V NL+PS+ ++ L F FGT+ +V R+ N S+G + F TP EA +A +++
Sbjct: 320 LYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLS 379
Query: 97 GHLIGSKPVIITFVELKPGQR 117
G +I SKP+ + + K +R
Sbjct: 380 GKMIESKPLYVAIAQRKEDRR 400
>RGD|2322083 [details] [associations]
symbol:LOC100360473 "poly A binding protein, cytoplasmic 5-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:2322083 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 KO:K13126 EMBL:CH473969 GeneTree:ENSGT00640000091232
CTD:140886 OMA:FSEYGPT IPI:IPI00369761 RefSeq:NP_001103836.1
UniGene:Rn.218841 Ensembl:ENSRNOT00000004462 GeneID:688518
KEGG:rno:688518 OrthoDB:EOG4DZ1VH NextBio:736678 Uniprot:D4A5H0
Length = 382
Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
Identities = 86/271 (31%), Positives = 149/271 (54%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S+DN+AL F FG + +V + N S+G+A + F++ A A +A MN
Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMN 166
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G + ++ V + + P +R+ V ++ + VFVKN + +D+E+LK F ++G
Sbjct: 167 GVRLNNRQVYVGRFKF-PEERAAEVRTRDRATFTN-VFVKNFGDDIDDEKLKKLFSEYGP 224
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXXX 216
VK++RD GKSKGFGF+++ +++AA+KA++E++G+ I V A+
Sbjct: 225 TESVKVIRDATGKSKGFGFVRYETHEAAQKAVLELHGKSIDGKVLCVGRAQKKIERLAEL 284
Query: 217 XXXXXLLQPARKNK-----IFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIG 267
L+ K + I++ NL IN+ + +E F+ FG+I+ + ++ + K G
Sbjct: 285 RRRFERLKLKDKTRPPGVPIYIKNLDETINDEKLKEEFSLFGSISRAKVMMEVGQGKGFG 344
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKVTL 298
+ F + A+ AV+ MNG V SK L VTL
Sbjct: 345 VVCFSSFEEASKAVNEMNGRVVGSKTLHVTL 375
Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
Identities = 77/266 (28%), Positives = 123/266 (46%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESR-GFAIIVFNTPAEAKKARVEM 95
L+V +L+P V L +F+ G LR R+ R+ S G+ + F PA+A+ A M
Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI KP + + + R VG +F+KNL +++D L F FG
Sbjct: 80 NFDLINGKPFRLMWSQPDDHLRKSGVG---------NIFIKNLDKSIDNRALFYLFSAFG 130
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXX 215
NI+ K+V D+NG SKG+ ++ F S AA +AI MNG + + +V +
Sbjct: 131 NILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAE 189
Query: 216 XXXXXXLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIE 270
A +FV N +I++ + ++LF+ +G S ++ D K GF+
Sbjct: 190 VRTRDR----ATFTNVFVKNFGDDIDDEKLKKLFSEYGPTESVKVIRDATGKSKGFGFVR 245
Query: 271 FIMPKHATHAVSTMNGHVFKSKPLKV 296
+ + A AV ++G K L V
Sbjct: 246 YETHEAAQKAVLELHGKSIDGKVLCV 271
Score = 238 (88.8 bits), Expect = 7.9e-20, P = 7.9e-20
Identities = 56/176 (31%), Positives = 98/176 (55%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
V N +D++ L F ++G V+V R+ +S+GF + + T A+KA +E++G
Sbjct: 203 VKNFGDDIDDEKLKKLFSEYGPTESVKVIRDATGKSKGFGFVRYETHEAAQKAVLELHGK 262
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDK-------VFVKNLVETVDEEELKSHF 151
I K + + + K + ++ E+ KDK +++KNL ET+++E+LK F
Sbjct: 263 SIDGKVLCVGRAQKKIERLAELRRRFERLKLKDKTRPPGVPIYIKNLDETINDEKLKEEF 322
Query: 152 IKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
FG+I K++ E G+ KGFG + F S++ A KA+ EMNGR++ + V+L +
Sbjct: 323 SLFGSISRAKVMM-EVGQGKGFGVVCFSSFEEASKAVNEMNGRVVGSKTLHVTLGQ 377
>UNIPROTKB|F1PQV8 [details] [associations]
symbol:PABPC5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 CTD:140886 OMA:FSEYGPT
EMBL:AAEX03026633 RefSeq:XP_549122.2 ProteinModelPortal:F1PQV8
Ensembl:ENSCAFT00000027652 GeneID:492002 KEGG:cfa:492002
Uniprot:F1PQV8
Length = 382
Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
Identities = 85/271 (31%), Positives = 149/271 (54%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S+DN+AL F FG + +V + N S+G+A + F++ A A +A MN
Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMN 166
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G + ++ V + + P +R+ V ++ + VFVKN +D+E+LK F +G
Sbjct: 167 GVRLNNRQVYVGRFKF-PEERAAEVRTRDRATFTN-VFVKNFGNDMDDEKLKEIFSGYGP 224
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXXX 216
VK++RD +GKSKGFGF+++ +++AA+KA+++++G+ I +V A+
Sbjct: 225 TESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSINGKVLYVGRAQKKIERLAEL 284
Query: 217 XXXXXLLQPARKNK-----IFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIG 267
L+ K++ I++ NL I++ + +E F+ FG+I+ + ++ + K G
Sbjct: 285 RRRFERLRLKEKSRPPGVPIYIKNLDETIDDEKLKEEFSSFGSISRAKVMVEVGQGKGFG 344
Query: 268 FIEFIMPKHATHAVSTMNGHVFKSKPLKVTL 298
+ F + AT AV MNG SKPL VTL
Sbjct: 345 VVCFSSFEDATKAVDEMNGRTVGSKPLHVTL 375
Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
Identities = 76/266 (28%), Positives = 124/266 (46%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESR-GFAIIVFNTPAEAKKARVEM 95
L+V +L+P V L +F+ G LR R+ R+ S G+ + F PA+A+ A M
Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI KP + + + R VG +F+KNL +++D L F FG
Sbjct: 80 NFDLINGKPFRLMWSQPDDRLRKSGVG---------NIFIKNLDKSIDNRALFYLFSAFG 130
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXX 215
NI+ K+V D+NG SKG+ ++ F S AA +AI MNG + + +V +
Sbjct: 131 NILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAE 189
Query: 216 XXXXXXLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIE 270
A +FV N +++++ + +E+F+ +G S ++ D K GF+
Sbjct: 190 VRTRDR----ATFTNVFVKNFGNDMDDEKLKEIFSGYGPTESVKVIRDASGKSKGFGFVR 245
Query: 271 FIMPKHATHAVSTMNGHVFKSKPLKV 296
+ + A AV ++G K L V
Sbjct: 246 YETHEAAQKAVLDLHGKSINGKVLYV 271
Score = 226 (84.6 bits), Expect = 1.9e-18, P = 1.9e-18
Identities = 55/176 (31%), Positives = 96/176 (54%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
V N +D++ L F +G V+V R+ + +S+GF + + T A+KA ++++G
Sbjct: 203 VKNFGNDMDDEKLKEIFSGYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGK 262
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDK-------VFVKNLVETVDEEELKSHF 151
I K + + + K + ++ E+ K+K +++KNL ET+D+E+LK F
Sbjct: 263 SINGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETIDDEKLKEEF 322
Query: 152 IKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
FG+I K++ E G+ KGFG + F S++ A KA+ EMNGR + V+L +
Sbjct: 323 SSFGSISRAKVMV-EVGQGKGFGVVCFSSFEDATKAVDEMNGRTVGSKPLHVTLGQ 377
>TAIR|locus:2012161 [details] [associations]
symbol:PAB8 "AT1G49760" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0046686 "response to cadmium ion"
evidence=IEP] [GO:0005829 "cytosol" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0006164 "purine nucleotide
biosynthetic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005829 GO:GO:0046686 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AC011807 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 ProtClustDB:CLSN2714507
EMBL:AF370517 EMBL:AY064622 IPI:IPI00535850 PIR:C96534
RefSeq:NP_001185184.1 RefSeq:NP_564554.1 UniGene:At.21584
UniGene:At.67107 UniGene:At.67318 ProteinModelPortal:Q9FXA2
SMR:Q9FXA2 IntAct:Q9FXA2 STRING:Q9FXA2 PaxDb:Q9FXA2 PRIDE:Q9FXA2
ProMEX:Q9FXA2 EnsemblPlants:AT1G49760.1 EnsemblPlants:AT1G49760.2
GeneID:841399 KEGG:ath:AT1G49760 TAIR:At1g49760 InParanoid:Q9FXA2
OMA:RPPYYAP PhylomeDB:Q9FXA2 Genevestigator:Q9FXA2 Uniprot:Q9FXA2
Length = 671
Score = 349 (127.9 bits), Expect = 4.5e-31, P = 4.5e-31
Identities = 90/277 (32%), Positives = 145/277 (52%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S+D++AL F FG + +VA + + +S+G+ + ++T A+ A ++N
Sbjct: 135 IFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQGAIDKLN 194
Query: 97 GHLIGSKPVII-TFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
G L+ K V + FV QR P ++ K V+VKNL E++ +EEL F +FG
Sbjct: 195 GMLLNDKQVYVGPFVHKL--QRD----PSGEKVKFTNVYVKNLSESLSDEELNKVFGEFG 248
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXX 215
I+RD GKSKGFGF+ F + A +A+ +NG+ FV A+
Sbjct: 249 VTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDALNGKTFDDKEWFVGKAQKKSERETE 308
Query: 216 XXXXX--XLLQPARKNK---IFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KH 265
L + A K++ ++V NL ++ + + E FA FGTITS ++ D +
Sbjct: 309 LKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPSGVSRG 368
Query: 266 IGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ F P+ AT A++ MNG + +KPL V L+ K
Sbjct: 369 SGFVAFSTPEEATRAITEMNGKMIVTKPLYVALAQRK 405
Score = 277 (102.6 bits), Expect = 2.9e-23, P = 2.9e-23
Identities = 72/278 (25%), Positives = 128/278 (46%)
Query: 21 GARSXXXXXXXXXXXXLHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDE-SRGFAI 79
GA + L+V +L+ +V + L F + G + VRV R+ S G+
Sbjct: 31 GAAAAAAGAAQQGTTSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGY 90
Query: 80 IVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLV 139
+ + TP +A +A E+N + + + + + P R VG +F+KNL
Sbjct: 91 VNYATPQDASRALNELNFMALNGRAIRVMYSVRDPSLRKSGVG---------NIFIKNLD 141
Query: 140 ETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHN 199
+++D + L F FG I+ K+ D +G+SKG+GF+Q+ + +AA+ AI ++NG ++
Sbjct: 142 KSIDHKALHETFSAFGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDK 201
Query: 200 STFVSLAEIXXXXXXXXXXXXXLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSS 259
+V + + + ++V NL ++++ E ++F FG TS
Sbjct: 202 QVYVG-PFVHKLQRDPSG------EKVKFTNVYVKNLSESLSDEELNKVFGEFGVTTSCV 254
Query: 260 LVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSK 292
++ D K GF+ F A AV +NG F K
Sbjct: 255 IMRDGEGKSKGFGFVNFENSDDAARAVDALNGKTFDDK 292
Score = 152 (58.6 bits), Expect = 8.1e-08, P = 8.1e-08
Identities = 30/83 (36%), Positives = 49/83 (59%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L+V NL+ SV + L F FGT+ +V R+ + SRG + F+TP EA +A EMN
Sbjct: 329 LYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATRAITEMN 388
Query: 97 GHLIGSKPVIITFVELKPGQRSK 119
G +I +KP+ + + K ++++
Sbjct: 389 GKMIVTKPLYVALAQRKEDRKAR 411
Score = 132 (51.5 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 41/170 (24%), Positives = 79/170 (46%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRD-ENGKSKGFGFIQFFSYKAAEKAIIEM 191
++V +L TV + +L F + G ++ V++ RD +S G+G++ + + + A +A+ E+
Sbjct: 47 LYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNEL 106
Query: 192 NGRMIQHNSTFVSLAEIXXXXXXXXXXXXXLLQPARKNKIFVANLPSNINNSEFEELFAR 251
N F++L L+ + IF+ NL +I++ E F+
Sbjct: 107 N---------FMALN--GRAIRVMYSVRDPSLRKSGVGNIFIKNLDKSIDHKALHETFSA 155
Query: 252 FGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
FG I S + D K GF+++ + A A+ +NG + K + V
Sbjct: 156 FGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYV 205
>RGD|1559517 [details] [associations]
symbol:Pabpc4l "poly(A) binding protein, cytoplasmic 4-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1559517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
TIGRFAMs:TIGR01628 OrthoDB:EOG4M398T GeneTree:ENSGT00640000091232
CTD:132430 EMBL:CH474091 IPI:IPI00367682 RefSeq:NP_001099899.1
UniGene:Rn.218503 Ensembl:ENSRNOT00000017012 GeneID:295010
KEGG:rno:295010 UCSC:RGD:1559517 NextBio:638845 Uniprot:D3ZGA4
Length = 370
Score = 341 (125.1 bits), Expect = 5.4e-31, P = 5.4e-31
Identities = 83/273 (30%), Positives = 140/273 (51%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+DN+ L F FG + +V ++ + S+G+ + + A +A EMNG
Sbjct: 102 IKNLDKSIDNKTLYEHFSPFGKIMSSKVMTDE-EGSKGYGFVHYQDQRAADRAIEEMNGK 160
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ + FV ++ + EK + V++KN + +D+E L+S F K+G +
Sbjct: 161 LLRDSTL---FVARFKSRKDREAELREKPAEFTNVYIKNFGDDMDDESLRSVFSKYGQTL 217
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXXXXX 218
VK+++D +GKSK FGF+ F S+KAA+ A+ +MNGR I + FV A+
Sbjct: 218 SVKVMKDASGKSKRFGFVSFDSHKAAKNAVEDMNGRDINGQTIFVGRAQKKVERQAELKE 277
Query: 219 XXXLLQPARKN-----KIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGFI 269
++ R K+++ NL I++ + F+ FG+I ++ + K G I
Sbjct: 278 MFEQMKKERIRARQAAKLYIKNLDDTIDDETLRKEFSVFGSICRVKVMQEAGQSKGFGLI 337
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F P+ A A++ MNG + SKPL + L G K
Sbjct: 338 CFFSPEAAAKAMAEMNGRILGSKPLNIAL-GQK 369
Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
Identities = 71/256 (27%), Positives = 126/256 (49%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L V L +F G + +R+ R+ + S G+ + F +A+KA M
Sbjct: 12 LYVGDLHEDVTEDLLFRKFNTVGPVLSIRICRDLISHRSLGYGYVNFLQVGDAQKALETM 71
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI K + + + + R +G VF+KNL +++D + L HF FG
Sbjct: 72 NFDLIKGKSIRLMWSQRDACLRKSGIG---------NVFIKNLDKSIDNKTLYEHFSPFG 122
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXX 215
I+ K++ DE G SKG+GF+ + +AA++AI EMNG++++ ++ FV+ +
Sbjct: 123 KIMSSKVMTDEEG-SKGYGFVHYQDQRAADRAIEEMNGKLLRDSTLFVARFKSRKDREAE 181
Query: 216 XXXXXXLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIE 270
+PA +++ N ++++ +F+++G S ++ D K GF+
Sbjct: 182 LRE-----KPAEFTNVYIKNFGDDMDDESLRSVFSKYGQTLSVKVMKDASGKSKRFGFVS 236
Query: 271 FIMPKHATHAVSTMNG 286
F K A +AV MNG
Sbjct: 237 FDSHKAAKNAVEDMNG 252
Score = 252 (93.8 bits), Expect = 1.5e-21, P = 1.5e-21
Identities = 58/179 (32%), Positives = 104/179 (58%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+++ N +D+++L + F K+G V+V ++ + +S+ F + F++ AK A +MN
Sbjct: 192 VYIKNFGDDMDDESLRSVFSKYGQTLSVKVMKDASGKSKRFGFVSFDSHKAAKNAVEDMN 251
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKD--------KVFVKNLVETVDEEELK 148
G I + + + + K +R + +Q KK+ K+++KNL +T+D+E L+
Sbjct: 252 GRDINGQTIFVGRAQKKV-ERQAELKEMFEQMKKERIRARQAAKLYIKNLDDTIDDETLR 310
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
F FG+I VK+++ E G+SKGFG I FFS +AA KA+ EMNGR++ ++L +
Sbjct: 311 KEFSVFGSICRVKVMQ-EAGQSKGFGLICFFSPEAAAKAMAEMNGRILGSKPLNIALGQ 368
>DICTYBASE|DDB_G0293558 [details] [associations]
symbol:pabpc1A "polyadenylate binding protein (PABP)"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA;ISS] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 dictyBase:DDB_G0293558 GO:GO:0005634 GO:GO:0045335
GenomeReviews:CM000155_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006378 EMBL:AAFI02000218 eggNOG:COG0724 GO:GO:0008143
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HSSP:P11940 OMA:ITEKNQQ RefSeq:XP_629007.1
ProteinModelPortal:Q54BM2 SMR:Q54BM2 STRING:Q54BM2 PRIDE:Q54BM2
EnsemblProtists:DDB0233359 GeneID:8629291 KEGG:ddi:DDB_G0293558
ProtClustDB:CLSZ2846557 Uniprot:Q54BM2
Length = 565
Score = 344 (126.2 bits), Expect = 7.6e-31, P = 7.6e-31
Identities = 82/270 (30%), Positives = 137/270 (50%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ +D++AL + F FG + +V + + S+GF + + T A KA ++NG
Sbjct: 102 IKNLDKGIDHKALYDTFSAFGNILSCKVVTDDGNSSKGFGFVHYETQESADKAIAKVNGM 161
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
+I + V + P + SK G + + K VF KNL E V ++LK ++G I
Sbjct: 162 MINGQKVFVG-----PFKSSKERG-QPTEVKFTNVFFKNLSEDVGPDQLKELLQQYGEIT 215
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXXXXX 218
+ I+ D+ GKSKGFGF F S +AA+ + NG++ + A+
Sbjct: 216 NITIMADDKGKSKGFGFANFESAEAAKNVVENENGKIFHGKPIYAGRAQ--KKIEREAEL 273
Query: 219 XXXLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFI 272
+ +++ N+ +I+N + E+F++FGTITS+ ++ D K GF+ +
Sbjct: 274 KHTFETKYQGVNLYIKNIDDSIDNDKLREVFSQFGTITSAIVMKDDKATTSKGFGFVCYT 333
Query: 273 MPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
P AT AV+ MNG + +KPL V L+ K
Sbjct: 334 APDEATRAVTEMNGRMIGTKPLYVALAQRK 363
Score = 289 (106.8 bits), Expect = 9.1e-25, P = 9.1e-25
Identities = 79/266 (29%), Positives = 128/266 (48%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDE-SRGFAIIVFNTPAEAKKARVEM 95
L+V +L P V Q L F + G + ++RV R+ N S +A + + A+A++A +
Sbjct: 12 LYVGDLLPEVSEQHLFEIFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNGADAERALDTL 71
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N I K I + + P R VG VF+KNL + +D + L F FG
Sbjct: 72 NNTPIRGKACRIMWSQRDPSLRKSGVG---------NVFIKNLDKGIDHKALYDTFSAFG 122
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXX 215
NI+ K+V D+ SKGFGF+ + + ++A+KAI ++NG MI FV +
Sbjct: 123 NILSCKVVTDDGNSSKGFGFVHYETQESADKAIAKVNGMMINGQKVFVGPFKSSKERG-- 180
Query: 216 XXXXXXLLQPA--RKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGF 268
QP + +F NL ++ + +EL ++G IT+ ++++D K GF
Sbjct: 181 --------QPTEVKFTNVFFKNLSEDVGPDQLKELLQQYGEITNITIMADDKGKSKGFGF 232
Query: 269 IEFIMPKHATHAVSTMNGHVFKSKPL 294
F + A + V NG +F KP+
Sbjct: 233 ANFESAEAAKNVVENENGKIFHGKPI 258
Score = 155 (59.6 bits), Expect = 2.9e-08, P = 2.9e-08
Identities = 30/94 (31%), Positives = 55/94 (58%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKKARVEM 95
L++ N++ S+DN L F +FGT+ V ++ K S+GF + + P EA +A EM
Sbjct: 286 LYIKNIDDSIDNDKLREVFSQFGTITSAIVMKDDKATTSKGFGFVCYTAPDEATRAVTEM 345
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYK 129
NG +IG+KP+ + + K +R++ ++++K
Sbjct: 346 NGRMIGTKPLYVALAQRKDIRRAQLEMQHQQKFK 379
>CGD|CAL0001392 [details] [associations]
symbol:orf19.3037 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0006406 "mRNA export from nucleus"
evidence=IEA] [GO:0006446 "regulation of translational initiation"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 CGD:CAL0001392
GO:GO:0005634 GO:GO:0005737 EMBL:AACQ01000017 EMBL:AACQ01000015
GO:GO:0006417 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HSSP:P11940
RefSeq:XP_721264.1 RefSeq:XP_721535.1 ProteinModelPortal:Q5AI15
SMR:Q5AI15 STRING:Q5AI15 PRIDE:Q5AI15 GeneID:3636891 GeneID:3637079
KEGG:cal:CaO19.10555 KEGG:cal:CaO19.3037 Uniprot:Q5AI15
Length = 629
Score = 345 (126.5 bits), Expect = 9.8e-31, P = 9.8e-31
Identities = 88/277 (31%), Positives = 144/277 (51%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVE-M 95
+ + NL P++DN+AL + F FG + +VA ++ +S+ F + + T AEA +A +E +
Sbjct: 142 IFIKNLHPAIDNKALHDTFSAFGKILSCKVATDEFGQSKCFGFVHYET-AEAAEAAIENV 200
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
NG L+ + V + K + SK EE + ++VKN+ EE + F FG
Sbjct: 201 NGMLLNDREVFVGKHISKKDRESKF---EEMKANFTNIYVKNIDLNYSEESFEKLFSPFG 257
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXX 215
I + + +D++GKSKGFGF+ F +++A KA+ E+N + I +V A+
Sbjct: 258 KITSIYLEKDQDGKSKGFGFVNFEDHESAVKAVEELNDKEINGQKIYVGRAQKKRERLEE 317
Query: 216 XXXXXXLLQPARKNK-----IFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KH 265
++ + K +FV NL I++ + EE F FGTITS+ ++ D K
Sbjct: 318 LKKQYEAVRLEKLAKYQGVNLFVKNLDDTIDSEKLEEEFKPFGTITSAKVMVDEAGKSKG 377
Query: 266 IGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ F P+ AT A++ MN + KPL V L+ K
Sbjct: 378 FGFVCFTTPEEATKAITEMNTRMINGKPLYVALAQRK 414
Score = 272 (100.8 bits), Expect = 8.6e-23, P = 8.6e-23
Identities = 78/255 (30%), Positives = 118/255 (46%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L PSV+ L F G + +RV R+ + +S G+A + ++ + +KA E+
Sbjct: 54 LYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKYEDGEKAIEEL 113
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N + I +P I + + P R G +F+KNL +D + L F FG
Sbjct: 114 NYNPIEGRPCRIMWSQRDPSARRSGDG---------NIFIKNLHPAIDNKALHDTFSAFG 164
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXX 215
I+ K+ DE G+SK FGF+ + + +AAE AI +NG ++ FV I
Sbjct: 165 KILSCKVATDEFGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVG-KHISKKDRES 223
Query: 216 XXXXXXLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIE 270
A I+V N+ N + FE+LF+ FG ITS L D K GF+
Sbjct: 224 KFEE----MKANFTNIYVKNIDLNYSEESFEKLFSPFGKITSIYLEKDQDGKSKGFGFVN 279
Query: 271 FIMPKHATHAVSTMN 285
F + A AV +N
Sbjct: 280 FEDHESAVKAVEELN 294
Score = 164 (62.8 bits), Expect = 3.2e-09, P = 3.2e-09
Identities = 32/83 (38%), Positives = 50/83 (60%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L V NL+ ++D++ L EFK FGT+ +V ++ +S+GF + F TP EA KA EMN
Sbjct: 338 LFVKNLDDTIDSEKLEEEFKPFGTITSAKVMVDEAGKSKGFGFVCFTTPEEATKAITEMN 397
Query: 97 GHLIGSKPVIITFVELKPGQRSK 119
+I KP+ + + K +RS+
Sbjct: 398 TRMINGKPLYVALAQRKDVRRSQ 420
>ASPGD|ASPL0000010999 [details] [associations]
symbol:fabM species:162425 "Emericella nidulans"
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0005737 GO:GO:0006417 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BN001302 EMBL:AACD01000065
GO:GO:0051028 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
EMBL:U70731 RefSeq:XP_661604.1 ProteinModelPortal:Q5B630 SMR:Q5B630
STRING:Q5B630 PRIDE:Q5B630 EnsemblFungi:CADANIAT00004687
GeneID:2873424 KEGG:ani:AN4000.2 OMA:MIRITYS OrthoDB:EOG4QJVWJ
Uniprot:Q5B630
Length = 732
Score = 304 (112.1 bits), Expect = 4.3e-26, P = 4.3e-26
Identities = 83/266 (31%), Positives = 123/266 (46%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+PSV L F G + +RV R+ S G+A + +N A ++A E+
Sbjct: 44 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGERALDEL 103
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI KP I + + P R G VF+KNL +D + L F FG
Sbjct: 104 NYTLIKGKPCRIMWSQRDPALRKTGQG---------NVFIKNLDSAIDNKALHDTFAAFG 154
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXX 215
NI+ K+ +DE G SKG+GF+ + + +AA AI +NG ++ FV I
Sbjct: 155 NILSCKVAQDEFGVSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVG-HHISKKDRQS 213
Query: 216 XXXXXXLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKH-----IGFIE 270
A I++ N+ + + EF +LF +FG ITS++L D GF+
Sbjct: 214 KFEE----MKANFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKSRGFGFVN 269
Query: 271 FIMPKHATHAVSTMNGHVFKSKPLKV 296
F + A AV MN +S+ L V
Sbjct: 270 FSTHESAQAAVEEMNDKEVRSQKLYV 295
Score = 298 (110.0 bits), Expect = 3.1e-30, Sum P(2) = 3.1e-30
Identities = 66/230 (28%), Positives = 122/230 (53%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ ++DN+AL + F FG + +VA+++ S+G+ + + T A A +NG
Sbjct: 134 IKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGVSKGYGFVHYETAEAANNAIKHVNGM 193
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ K V + K ++SK EE + +++KN+ V++EE + F KFG I
Sbjct: 194 LLNDKKVFVGHHISKKDRQSKF---EEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGEIT 250
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXXXXX 218
+ RD GKS+GFGF+ F ++++A+ A+ EMN + ++ +V A+
Sbjct: 251 SATLSRDSEGKSRGFGFVNFSTHESAQAAVEEMNDKEVRSQKLYVGRAQKKHEREEELRK 310
Query: 219 XXXLLQPARKNK-----IFVANLPSNINNSEFEELFARFGTITSSSLVSD 263
+ + +K ++V NL ++++ + ELF +GTITS+ ++ D
Sbjct: 311 QYEAARMEKASKYQGVNLYVKNLTDDVDDDKLRELFGPYGTITSAKVMRD 360
Score = 70 (29.7 bits), Expect = 3.1e-30, Sum P(2) = 3.1e-30
Identities = 17/43 (39%), Positives = 22/43 (51%)
Query: 260 LVSDKHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
L K GF+ F P A+ AV+ MN + KPL V L+ K
Sbjct: 413 LGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRK 455
>UNIPROTKB|E7ERJ7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00909378
ProteinModelPortal:E7ERJ7 SMR:E7ERJ7 PRIDE:E7ERJ7
Ensembl:ENST00000522387 UCSC:uc011lhc.1 ArrayExpress:E7ERJ7
Bgee:E7ERJ7 Uniprot:E7ERJ7
Length = 604
Score = 338 (124.0 bits), Expect = 4.9e-30, P = 4.9e-30
Identities = 84/253 (33%), Positives = 136/253 (53%)
Query: 60 TLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVII-TFVELKPGQRS 118
+LR V ++N S+G+ + F T A++A +MNG L+ + V + F K +R
Sbjct: 92 SLRKSGVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK--ERE 148
Query: 119 KPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQF 178
+G K++ V++KN E +D+E LK F KFG + VK++ DE+GKSKGFGF+ F
Sbjct: 149 AELGARAKEFTN--VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSF 206
Query: 179 FSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXXXXXXXXLLQPARKNK-----IFV 233
++ A+KA+ EMNG+ + +V A+ ++ R + ++V
Sbjct: 207 ERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYV 266
Query: 234 ANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVF 289
NL I++ + F+ FGTITS+ ++ + K GF+ F P+ AT AV+ MNG +
Sbjct: 267 KNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIV 326
Query: 290 KSKPLKVTLSGTK 302
+KPL V L+ K
Sbjct: 327 ATKPLYVALAQRK 339
Score = 260 (96.6 bits), Expect = 1.6e-21, P = 1.6e-21
Identities = 59/179 (32%), Positives = 102/179 (56%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+++ N +D++ L + F KFG V+V +++ +S+GF + F +A+KA EMN
Sbjct: 161 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 220
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKV--------FVKNLVETVDEEELK 148
G + K + + + K +R + + +Q K+D++ +VKNL + +D+E L+
Sbjct: 221 GKELNGKQIYVGRAQKKV-ERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 279
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
F FG I K++ E G+SKGFGF+ F S + A KA+ EMNGR++ +V+LA+
Sbjct: 280 KEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 337
Score = 156 (60.0 bits), Expect = 3.7e-16, Sum P(2) = 3.7e-16
Identities = 41/134 (30%), Positives = 67/134 (50%)
Query: 127 QYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEK 186
+Y+ ++VKNL + +D+E L+ F FG I K++ E G+SKGFGF+ F S + A K
Sbjct: 258 RYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATK 316
Query: 187 AIIEMNGRMIQHNSTFVSLAE--------IXXXXXXXXXXXXXL-------LQPARKNKI 231
A+ EMNGR++ +V+LA+ + + QPA +
Sbjct: 317 AVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGY 376
Query: 232 FVANLPSNINNSEF 245
F+A +P N + +
Sbjct: 377 FMAAIPQTQNRAAY 390
Score = 116 (45.9 bits), Expect = 3.7e-16, Sum P(2) = 3.7e-16
Identities = 31/94 (32%), Positives = 46/94 (48%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L P V L +F G + +RV R+ S G+A + F PA+A++A M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYK 129
N +I KPV I + + P R V +E K
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVVCDENGSK 106
>WB|WBGene00003903 [details] [associations]
symbol:pab-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000003
GO:GO:0003723 eggNOG:COG0724 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
GeneTree:ENSGT00640000091232 EMBL:Z50110 PIR:T21095
RefSeq:NP_510260.1 ProteinModelPortal:Q19579 SMR:Q19579
STRING:Q19579 PaxDb:Q19579 PRIDE:Q19579 EnsemblMetazoa:F18H3.3a.1
EnsemblMetazoa:F18H3.3a.2 EnsemblMetazoa:F18H3.3a.3
EnsemblMetazoa:F18H3.3a.4 GeneID:181473 KEGG:cel:CELE_F18H3.3
UCSC:F18H3.3a.3 CTD:181473 WormBase:F18H3.3a InParanoid:Q19579
OMA:YEESNIG NextBio:914090 ArrayExpress:Q19579 Uniprot:Q19579
Length = 692
Score = 339 (124.4 bits), Expect = 6.1e-30, P = 6.1e-30
Identities = 86/279 (30%), Positives = 144/279 (51%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ +DN+++ + F FG + +VA + S+G+ + F T A+ A ++N
Sbjct: 147 IFIKNLDRVIDNKSVYDTFSLFGNILSCKVATDDEGNSKGYGFVHFETEHSAQTAIEKVN 206
Query: 97 GHLIGSKPVIITFVELKP-GQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
G L+ K V + + +P QR K +G E K VFVKN E +D+E+L + F KFG
Sbjct: 207 GMLLSDKKVYVG--KFQPRAQRMKELG--ESGLKYTNVFVKNFGEHLDQEKLSAMFSKFG 262
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL--AEIXXXXX 213
I ++ D GK KGFGF+ F AA +A+ ++N +++ +S+ A+
Sbjct: 263 EITSAVVMTDAQGKPKGFGFVAFADQDAAGQAVEKLNDSILEGTDCKLSVCRAQKKSERS 322
Query: 214 XXXXXXXXLLQPARKNK-----IFVANLPSNINNSEFEELFARFGTITSSSLVSD----- 263
L+ R + ++V N+ ++N+ + F+ FGTITS+ ++ D
Sbjct: 323 AELKRKYEALKQERVQRYQGVNLYVKNIEEDLNDDGLRDHFSSFGTITSAKVMVDENGRS 382
Query: 264 KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
K GF+ F P+ AT AV+ MN + +KPL V L+ K
Sbjct: 383 KGFGFVCFEKPEEATAAVTDMNSKMIGAKPLYVALAQRK 421
Score = 282 (104.3 bits), Expect = 9.0e-24, P = 9.0e-24
Identities = 70/268 (26%), Positives = 126/268 (47%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDE-SRGFAIIVFNTPAEAKKARVEM 95
L++ +L P V L +F G + +RV R+ S G+A + F PA+A++A M
Sbjct: 59 LYIGDLHPDVSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERALDTM 118
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N +I +P+ I + + P R G +F+KNL +D + + F FG
Sbjct: 119 NFEVIHGRPMRIMWSQRDPAARRAGNG---------NIFIKNLDRVIDNKSVYDTFSLFG 169
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXX 215
NI+ K+ D+ G SKG+GF+ F + +A+ AI ++NG ++ +V +
Sbjct: 170 NILSCKVATDDEGNSKGYGFVHFETEHSAQTAIEKVNGMLLSDKKVYVGKFQPRAQRMKE 229
Query: 216 XXXXXXLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIE 270
+ +FV N +++ + +F++FG ITS+ +++D K GF+
Sbjct: 230 LGESGL-----KYTNVFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQGKPKGFGFVA 284
Query: 271 FIMPKHATHAVSTMNGHVFKSKPLKVTL 298
F A AV +N + + K+++
Sbjct: 285 FADQDAAGQAVEKLNDSILEGTDCKLSV 312
Score = 150 (57.9 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 27/83 (32%), Positives = 48/83 (57%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L+V N+E +++ L + F FGT+ +V ++N S+GF + F P EA A +MN
Sbjct: 345 LYVKNIEEDLNDDGLRDHFSSFGTITSAKVMVDENGRSKGFGFVCFEKPEEATAAVTDMN 404
Query: 97 GHLIGSKPVIITFVELKPGQRSK 119
+IG+KP+ + + K +R++
Sbjct: 405 SKMIGAKPLYVALAQRKEDRRAQ 427
Score = 127 (49.8 bits), Expect = 5.4e-05, P = 5.4e-05
Identities = 51/224 (22%), Positives = 89/224 (39%)
Query: 80 IVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVG-PEEKQYKKDKVFVKNL 138
+V + P A V + G + G +I + G +G P Y +++ +L
Sbjct: 11 VVTSAPPPTAAATV-VAGAVAGQPQAVI-----QQGPPPTNIGYPPNATYSMASLYIGDL 64
Query: 139 VETVDEEELKSHFIKFGNIIEVKIVRDENGK-SKGFGFIQFFSYKAAEKAIIEMNGRMIQ 197
V E L F G ++ +++ RD + S G+ ++ F AE+A+ MN +I
Sbjct: 65 HPDVSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERALDTMNFEVIH 124
Query: 198 HNSTFVSLAEIXXXXXXXXXXXXXLLQPARKNKIFVANLPSNINNSEFEELFARFGTITS 257
+ ++ + A IF+ NL I+N + F+ FG I S
Sbjct: 125 GRPMRIMWSQRDPAA-----------RRAGNGNIFIKNLDRVIDNKSVYDTFSLFGNILS 173
Query: 258 SSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
+ +D K GF+ F A A+ +NG + K + V
Sbjct: 174 CKVATDDEGNSKGYGFVHFETEHSAQTAIEKVNGMLLSDKKVYV 217
>UNIPROTKB|H3BNY3 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL359757 TIGRFAMs:TIGR01628
HGNC:HGNC:8556 ProteinModelPortal:H3BNY3 SMR:H3BNY3
Ensembl:ENST00000569397 Bgee:H3BNY3 Uniprot:H3BNY3
Length = 347
Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
Identities = 80/252 (31%), Positives = 134/252 (53%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ V NL+ S++N+AL + FG + V ++N S+G+ + F T A++A +MN
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMN 159
Query: 97 GHLIGSKPVII-TFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
G L+ + V + F K +R +G K++ V++KN E +D+E LK F KFG
Sbjct: 160 GMLLNGRKVFVGQFKSRK--EREAELGARAKEFPN--VYIKNFGEDMDDERLKDLFGKFG 215
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXX 215
+ VK++ DE+GKSKGFGF+ F ++ A+KA+ EMNG+ + +V A+
Sbjct: 216 PALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTE 275
Query: 216 XXXXXXLLQPARKNK-----IFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHI 266
++ R + ++V NL I++ + F+ FGTITS+ ++ + K
Sbjct: 276 LKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGF 335
Query: 267 GFIEFIMPKHAT 278
GF+ F P+ AT
Sbjct: 336 GFVCFSSPEEAT 347
Score = 276 (102.2 bits), Expect = 4.2e-24, P = 4.2e-24
Identities = 77/266 (28%), Positives = 125/266 (46%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L P V L +F G + +R+ R+ S +A + F +A+ A M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDTM 72
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N +I KPV I + + P R VG +FVKNL ++++ + L FG
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVG---------NIFVKNLDKSINNKALYDTVSAFG 123
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXX 215
NI+ +V DENG SKG+GF+ F +++AAE+AI +MNG ++ FV +
Sbjct: 124 NILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAE 182
Query: 216 XXXXXXLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIE 270
P +++ N ++++ ++LF +FG S +++D K GF+
Sbjct: 183 LGARAKEF-P----NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVS 237
Query: 271 FIMPKHATHAVSTMNGHVFKSKPLKV 296
F + A AV MNG K + V
Sbjct: 238 FERHEDAQKAVDEMNGKELNGKQIYV 263
Score = 132 (51.5 bits), Expect = 4.9e-06, P = 4.9e-06
Identities = 47/181 (25%), Positives = 76/181 (41%)
Query: 121 VGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFF 179
+ P Y ++V +L V E L F G I+ ++I RD S + ++ F
Sbjct: 1 MNPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQ 60
Query: 180 SYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXXXXXXXXLLQPARKNKIFVANLPSN 239
K AE A+ MN +I+ + ++ L+ + IFV NL +
Sbjct: 61 HTKDAEHALDTMNFDVIKGKPVRIMWSQRDPS-----------LRKSGVGNIFVKNLDKS 109
Query: 240 INNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLK 295
INN + + FG I S ++V D K GF+ F + A A+ MNG + + +
Sbjct: 110 INNKALYDTVSAFGNILSCNVVCDENGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVF 169
Query: 296 V 296
V
Sbjct: 170 V 170
>UNIPROTKB|A4QUF0 [details] [associations]
symbol:PAB1 "Polyadenylate-binding protein, cytoplasmic and
nuclear" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000166
EMBL:CM001233 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0043581 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
OrthoDB:EOG4QJVWJ RefSeq:XP_003712237.1 ProteinModelPortal:A4QUF0
SMR:A4QUF0 STRING:A4QUF0 EnsemblFungi:MGG_09505T0 GeneID:2680542
KEGG:mgr:MGG_09505 Uniprot:A4QUF0
Length = 762
Score = 323 (118.8 bits), Expect = 4.2e-28, P = 4.2e-28
Identities = 86/286 (30%), Positives = 131/286 (45%)
Query: 18 DDEGARSXXXXXXXXXXXXLHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRG 76
D G L+V L+PSV L F + G++ +RV R+ S G
Sbjct: 44 DTAGPTPSSAAPHPQASASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLG 103
Query: 77 FAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVK 136
+A + +NT A+ +KA E+N LI +P I + + P R G VF+K
Sbjct: 104 YAYVNYNTTADGEKALEELNYTLIKGRPCRIMWSQRDPALRKTGQG---------NVFIK 154
Query: 137 NLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMI 196
NL +D + L F FGNI+ K+ +DENG SKG+GF+ + + +AA +AI +NG ++
Sbjct: 155 NLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYETDEAASQAIKHVNGMLL 214
Query: 197 QHNSTFVSLAEIXXXXXXXXXXXXXLLQPARKNKIFVANLPSNINNSEFEELFARFGTIT 256
+V I A I+V N+ + + EF LF ++G +T
Sbjct: 215 NEKKVYVG-HHIPKKDRQSKFDE----MKANFTNIYVKNINPEVTDDEFRTLFEKYGDVT 269
Query: 257 SSSLVSDKH------IGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
SSSL D+ GF+ F + A+ AV +N F + L V
Sbjct: 270 SSSLARDQETGKSRGFGFVNFTSHEDASKAVQELNEKEFHGQNLYV 315
Score = 287 (106.1 bits), Expect = 6.4e-30, Sum P(2) = 6.4e-30
Identities = 64/231 (27%), Positives = 123/231 (53%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ ++DN+AL + F FG + +VA+++N S+G+ + + T A +A +NG
Sbjct: 153 IKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYETDEAASQAIKHVNGM 212
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ K V + K ++SK +E + ++VKN+ V ++E ++ F K+G++
Sbjct: 213 LLNEKKVYVGHHIPKKDRQSKF---DEMKANFTNIYVKNINPEVTDDEFRTLFEKYGDVT 269
Query: 159 EVKIVRD-ENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXXXX 217
+ RD E GKS+GFGF+ F S++ A KA+ E+N + + +V A+
Sbjct: 270 SSSLARDQETGKSRGFGFVNFTSHEDASKAVQELNEKEFHGQNLYVGRAQKKHEREEELR 329
Query: 218 XXXXLLQPARKNK-----IFVANLPSNINNSEFEELFARFGTITSSSLVSD 263
+ + +K +++ NL +++ + +LF+ FG ITS+ ++ D
Sbjct: 330 KSYEAARQEKASKYQGVNLYIKNLDDEVDDEKLRQLFSEFGPITSAKVMRD 380
Score = 101 (40.6 bits), Expect = 0.00062, Sum P(2) = 0.00062
Identities = 20/40 (50%), Positives = 28/40 (70%)
Query: 168 GKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
GKSKGFGF+ F + A KA+ EMN RM+ + +V+LA+
Sbjct: 430 GKSKGFGFVCFANPDDATKAVAEMNQRMVNNKPLYVALAQ 469
Score = 79 (32.9 bits), Expect = 6.4e-30, Sum P(2) = 6.4e-30
Identities = 19/47 (40%), Positives = 25/47 (53%)
Query: 256 TSSSLVSDKHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
+ S L K GF+ F P AT AV+ MN + +KPL V L+ K
Sbjct: 425 SKSKLGKSKGFGFVCFANPDDATKAVAEMNQRMVNNKPLYVALAQRK 471
Score = 61 (26.5 bits), Expect = 0.00062, Sum P(2) = 0.00062
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDE 73
L++ NL+ VD++ L F +FG + +V R+ E
Sbjct: 348 LYIKNLDDEVDDEKLRQLFSEFGPITSAKVMRDSITE 384
>TAIR|locus:2009036 [details] [associations]
symbol:PAB1 "poly(A) binding protein 1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K13126 IPI:IPI00540782 RefSeq:NP_174676.2 UniGene:At.51928
ProteinModelPortal:F4HT49 SMR:F4HT49 PRIDE:F4HT49
EnsemblPlants:AT1G34140.1 GeneID:840313 KEGG:ath:AT1G34140
OMA:VLSIRIC ArrayExpress:F4HT49 Uniprot:F4HT49
Length = 407
Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
Identities = 89/276 (32%), Positives = 142/276 (51%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
V NL+ S+DN+ L + F FG + +VAR+ + S+G+ + F + A NG
Sbjct: 35 VKNLDESIDNKQLCDMFSAFGKVLSCKVARDASGVSKGYGFVQFYSDLSVYTACNFHNGT 94
Query: 99 LIGSKPV-IITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNI 157
LI ++ + + FV S+ G +K V+VKNLVET + +LK F +FG I
Sbjct: 95 LIRNQHIHVCPFV-------SR--GQWDKSRVFTNVYVKNLVETATDADLKRLFGEFGEI 145
Query: 158 IEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXXXX 217
+++D GKS+ FGF+ F +AA AI +MNG ++ V A+
Sbjct: 146 TSAVVMKDGEGKSRRFGFVNFEKAEAAVTAIEKMNGVVVDEKELHVGRAQRKTNRTEDLK 205
Query: 218 XXXXLLQPARKNK------IFVANLPSNINNSEFEELFARFGTITSSSLVS-----DKHI 266
L + R K ++V NL +++N++ EELF+ FGTITS ++ K +
Sbjct: 206 AKFELEKIIRDMKTRKGMNLYVKNLDDSVDNTKLEELFSEFGTITSCKVMVHSNGISKGV 265
Query: 267 GFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+EF + A+ A+ MNG + +KP+ V+L+ K
Sbjct: 266 GFVEFSTSEEASKAMLKMNGKMVGNKPIYVSLAQCK 301
Score = 207 (77.9 bits), Expect = 8.7e-15, P = 8.7e-15
Identities = 55/180 (30%), Positives = 97/180 (53%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVE-M 95
++V NL + + L F +FG + V ++ +SR F + F AEA +E M
Sbjct: 121 VYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEK-AEAAVTAIEKM 179
Query: 96 NGHLIGSKPVIITFVELKPGQ----RSK----PVGPEEKQYKKDKVFVKNLVETVDEEEL 147
NG ++ K + + + K + ++K + + K K ++VKNL ++VD +L
Sbjct: 180 NGVVVDEKELHVGRAQRKTNRTEDLKAKFELEKIIRDMKTRKGMNLYVKNLDDSVDNTKL 239
Query: 148 KSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
+ F +FG I K++ NG SKG GF++F + + A KA+++MNG+M+ + +VSLA+
Sbjct: 240 EELFSEFGTITSCKVMVHSNGISKGVGFVEFSTSEEASKAMLKMNGKMVGNKPIYVSLAQ 299
Score = 204 (76.9 bits), Expect = 2.2e-14, P = 2.2e-14
Identities = 56/183 (30%), Positives = 86/183 (46%)
Query: 123 PEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYK 182
P + + VFVKNL E++D ++L F FG ++ K+ RD +G SKG+GF+QF+S
Sbjct: 23 PSNRMSGRGNVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDASGVSKGYGFVQFYSDL 82
Query: 183 AAEKAIIEMNGRMIQ----HNSTFVSLAEIXXXXXXXXXXXXXLLQPARKNKIFVANLPS 238
+ A NG +I+ H FVS + ++V NL
Sbjct: 83 SVYTACNFHNGTLIRNQHIHVCPFVSRGQWDKSRVFT--------------NVYVKNLVE 128
Query: 239 NINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKP 293
+++ + LF FG ITS+ ++ D + GF+ F + A A+ MNG V K
Sbjct: 129 TATDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAIEKMNGVVVDEKE 188
Query: 294 LKV 296
L V
Sbjct: 189 LHV 191
Score = 159 (61.0 bits), Expect = 5.5e-09, P = 5.5e-09
Identities = 30/77 (38%), Positives = 48/77 (62%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L+V NL+ SVDN L F +FGT+ +V + N S+G + F+T EA KA ++MN
Sbjct: 225 LYVKNLDDSVDNTKLEELFSEFGTITSCKVMVHSNGISKGVGFVEFSTSEEASKAMLKMN 284
Query: 97 GHLIGSKPVIITFVELK 113
G ++G+KP+ ++ + K
Sbjct: 285 GKMVGNKPIYVSLAQCK 301
>POMBASE|SPAC57A7.04c [details] [associations]
symbol:pabp "mRNA export shuttling protein"
species:4896 "Schizosaccharomyces pombe" [GO:0002183 "cytoplasmic
translational initiation" evidence=NAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
evidence=IMP] [GO:0006446 "regulation of translational initiation"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=TAS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 PomBase:SPAC57A7.04c
GO:GO:0005829 GO:GO:0005634 EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0000166 GO:GO:0006446 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0006406 eggNOG:COG0724 GO:GO:0002183 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 OrthoDB:EOG4QJVWJ EMBL:M64603 PIR:T38950
RefSeq:NP_593377.1 ProteinModelPortal:P31209 SMR:P31209
IntAct:P31209 STRING:P31209 PRIDE:P31209
EnsemblFungi:SPAC57A7.04c.1 GeneID:2541505 KEGG:spo:SPAC57A7.04c
OMA:ANHECAQ NextBio:20802604 Uniprot:P31209
Length = 653
Score = 331 (121.6 bits), Expect = 3.8e-29, P = 3.8e-29
Identities = 77/274 (28%), Positives = 141/274 (51%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+P++DN+AL + F FG + +VA ++ ++G+ + F++ A A +NG
Sbjct: 172 IKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVNGM 231
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
L+ K V +V +R + E + V++KNL + E+E F +FG I
Sbjct: 232 LLNDKKV---YVGHHVSRRERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEIT 288
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXXXXX 218
+ +V+D+N K +GFGF+ + +++ A+KA+ E+N + + +V A+
Sbjct: 289 SLSLVKDQNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHEREEELRK 348
Query: 219 XXXLLQPARKNK-----IFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGF 268
++ + NK +F+ NL +++ + F+ FGTITS+ +++D K GF
Sbjct: 349 RYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGKSKGFGF 408
Query: 269 IEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
+ + P+ A AV+ MN + KPL V L+ K
Sbjct: 409 VCYTTPEEANKAVTEMNQRMLAGKPLYVALAQRK 442
Score = 303 (111.7 bits), Expect = 4.2e-26, P = 4.2e-26
Identities = 82/266 (30%), Positives = 124/266 (46%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L+PSV L F G + +RV R+ S G+A + F+ + +KA E+
Sbjct: 82 LYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDEL 141
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N LI +P I + + P R G VF+KNL +D + L F FG
Sbjct: 142 NYTLIKGRPCRIMWSQRDPSLRKMGTG---------NVFIKNLDPAIDNKALHDTFSAFG 192
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXX 215
I+ K+ DE G +KG+GF+ F S ++A AI +NG ++ +V
Sbjct: 193 KILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVG----HHVSRRE 248
Query: 216 XXXXXXLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKH-----IGFIE 270
L+ A +++ NL + I EF +LF +FG ITS SLV D++ GF+
Sbjct: 249 RQSKVEALK-ANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVN 307
Query: 271 FIMPKHATHAVSTMNGHVFKSKPLKV 296
+ + A AV +N +K K L V
Sbjct: 308 YANHECAQKAVDELNDKEYKGKKLYV 333
Score = 255 (94.8 bits), Expect = 6.5e-21, P = 6.5e-21
Identities = 58/179 (32%), Positives = 99/179 (55%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+++ NL+ + Q + F +FG + + + +++ND+ RGF + + A+KA E+N
Sbjct: 263 VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELN 322
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKV--------FVKNLVETVDEEELK 148
K + + + K +R + + +Q K +K+ F+KNL + VD+E LK
Sbjct: 323 DKEYKGKKLYVGRAQ-KKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLK 381
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
+ F FG I KI+ DE GKSKGFGF+ + + + A KA+ EMN RM+ +V+LA+
Sbjct: 382 AEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQ 440
Score = 155 (59.6 bits), Expect = 3.6e-08, P = 3.6e-08
Identities = 28/83 (33%), Positives = 48/83 (57%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L + NL+ VD++ L EF FGT+ ++ ++ +S+GF + + TP EA KA EMN
Sbjct: 366 LFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMN 425
Query: 97 GHLIGSKPVIITFVELKPGQRSK 119
++ KP+ + + K +RS+
Sbjct: 426 QRMLAGKPLYVALAQRKEVRRSQ 448
>UNIPROTKB|E2RQC8 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:AAEX03008681
ProteinModelPortal:E2RQC8 PRIDE:E2RQC8 Ensembl:ENSCAFT00000000885
NextBio:20898275 Uniprot:E2RQC8
Length = 596
Score = 328 (120.5 bits), Expect = 5.8e-29, P = 5.8e-29
Identities = 78/245 (31%), Positives = 132/245 (53%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S+DN+AL + F FG + +V ++N S+G+ + F T A++A +MN
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 159
Query: 97 GHLIGSKPVII-TFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
G L+ + V + F K +R +G K++ V++KN E +D+E LK F KFG
Sbjct: 160 GMLLNDRKVFVGRFKSRK--EREAELGARAKEFTN--VYIKNFGEDMDDERLKDLFGKFG 215
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXX 215
+ VK++ DE+GKSKGFGF+ F ++ A+KA+ EMNG+ + +V A+
Sbjct: 216 PALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTE 275
Query: 216 XXXXXXLLQPARKNK-----IFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHI 266
++ R + ++V NL I++ + F+ FGTITS+ ++ + K
Sbjct: 276 LKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGF 335
Query: 267 GFIEF 271
GF+ F
Sbjct: 336 GFVCF 340
Score = 316 (116.3 bits), Expect = 1.2e-27, P = 1.2e-27
Identities = 84/267 (31%), Positives = 133/267 (49%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L P V L +F G + +RV R+ S G+A + F PA+A++A M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N +I KPV I + + P R VG +F+KNL +++D + L F FG
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVG---------NIFIKNLDKSIDNKALYDTFSAFG 123
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXX 215
NI+ K+V DENG SKG+GF+ F + +AAE+AI +MNG ++ FV +
Sbjct: 124 NILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK------SR 176
Query: 216 XXXXXXLLQPARK-NKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFI 269
L A++ +++ N ++++ ++LF +FG S +++D K GF+
Sbjct: 177 KEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFV 236
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKV 296
F + A AV MNG K + V
Sbjct: 237 SFERHEDAQKAVDEMNGKELNGKQIYV 263
>WB|WBGene00003902 [details] [associations]
symbol:pab-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0040010 "positive regulation of growth
rate" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0010171 "body morphogenesis" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0007276 "gamete generation" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0043186
"P granule" evidence=IDA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0009792
GO:GO:0002009 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0010171
GO:GO:0040035 GO:GO:0000932 GO:GO:0007276 GO:GO:0043186 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AL032631 HSSP:P11940 GeneTree:ENSGT00640000091232
GeneID:172920 KEGG:cel:CELE_Y106G6H.2 UCSC:Y106G6H.2b CTD:172920
NextBio:877531 PIR:T26427 RefSeq:NP_001021709.1
ProteinModelPortal:Q9U302 SMR:Q9U302 DIP:DIP-26308N IntAct:Q9U302
MINT:MINT-226577 STRING:Q9U302 PRIDE:Q9U302
EnsemblMetazoa:Y106G6H.2a.1 EnsemblMetazoa:Y106G6H.2a.2
EnsemblMetazoa:Y106G6H.2a.3 EnsemblMetazoa:Y106G6H.2a.4
EnsemblMetazoa:Y106G6H.2a.5 EnsemblMetazoa:Y106G6H.2a.6
WormBase:Y106G6H.2a InParanoid:Q9U302 OMA:CKVAMDE
ArrayExpress:Q9U302 Uniprot:Q9U302
Length = 646
Score = 314 (115.6 bits), Expect = 6.7e-29, Sum P(2) = 6.7e-29
Identities = 80/266 (30%), Positives = 131/266 (49%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVAR-NKNDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L P V+ L +F G + +RV R N S G+A + F PA+A++A M
Sbjct: 34 LYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAERAMDTM 93
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N + KP+ I + + P R G +F+KNL + +D + + F FG
Sbjct: 94 NFEALHGKPMRIMWSQRDPAMRRSGAG---------NIFIKNLDKVIDNKSIYDTFSLFG 144
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXX 215
NI+ K+ DE+G SKG+GF+ F + +AA+ AI ++NG ++ FV +
Sbjct: 145 NILSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQ------PR 198
Query: 216 XXXXXXLLQPARK-NKIFVANLPSNINNSEFEELFARFGTITSSSLVS----DKHIGFIE 270
L + A++ ++V N + N E+LFA+FG ITS +++ K GF+
Sbjct: 199 AQRNRELGETAKQFTNVYVKNFGDHYNKETLEKLFAKFGNITSCEVMTVEGKSKGFGFVA 258
Query: 271 FIMPKHATHAVSTMNGHVFKSKPLKV 296
F P+ A AV ++ + LK+
Sbjct: 259 FANPEEAETAVQALHDSTIEGTDLKL 284
Score = 307 (113.1 bits), Expect = 3.9e-28, Sum P(2) = 3.9e-28
Identities = 82/279 (29%), Positives = 144/279 (51%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ +DN+++ + F FG + +VA +++ S+G+ + F T A+ A ++N
Sbjct: 122 IFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQKVN 181
Query: 97 GHLIGSKPVIITFVELKP-GQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
G L+ K V + + +P QR++ +G KQ+ V+VKN + ++E L+ F KFG
Sbjct: 182 GMLLAGKKVFVG--KFQPRAQRNRELGETAKQFTN--VYVKNFGDHYNKETLEKLFAKFG 237
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNST--FVSLAEIXXXXX 213
NI +++ E GKSKGFGF+ F + + AE A+ ++ I+ V A+
Sbjct: 238 NITSCEVMTVE-GKSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHVCRAQKKSERH 296
Query: 214 XXXXXXXXLLQPARKNK-----IFVANLPSNINNSEFEELFARFGTITSSSLVSD----- 263
+ R K ++V NL +++ ++ F +G ITS+ +++D
Sbjct: 297 AELKKKHEQHKAERMQKYQGVNLYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENGRS 356
Query: 264 KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
K GF+ F P+ AT AV+ MN + SKPL V ++ K
Sbjct: 357 KGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYVAIAQRK 395
Score = 151 (58.2 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
Identities = 27/83 (32%), Positives = 48/83 (57%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L+V NL+ +VD+ L +F+ +G + +V ++N S+GF + F P EA A EMN
Sbjct: 319 LYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEATSAVTEMN 378
Query: 97 GHLIGSKPVIITFVELKPGQRSK 119
++ SKP+ + + K +R++
Sbjct: 379 SKMVCSKPLYVAIAQRKEDRRAQ 401
Score = 38 (18.4 bits), Expect = 6.7e-29, Sum P(2) = 6.7e-29
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 298 LSGTKPGVSITNPTKAPKKPAY 319
+ G PG ++ NPT+ P P Y
Sbjct: 415 MHGNVPGAAMYNPTQ-PG-PGY 434
>TAIR|locus:2058573 [details] [associations]
symbol:PAB4 "AT2G23350" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0046686
"response to cadmium ion" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005829
GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC002391 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 OMA:MIRITYS EMBL:AY050859
EMBL:AY079389 IPI:IPI00530940 PIR:T00497 RefSeq:NP_179916.1
UniGene:At.25439 ProteinModelPortal:O22173 SMR:O22173 IntAct:O22173
STRING:O22173 PaxDb:O22173 PRIDE:O22173 ProMEX:O22173
EnsemblPlants:AT2G23350.1 GeneID:816867 KEGG:ath:AT2G23350
TAIR:At2g23350 InParanoid:O22173 PhylomeDB:O22173
ProtClustDB:CLSN2913301 Genevestigator:O22173 Uniprot:O22173
Length = 662
Score = 328 (120.5 bits), Expect = 8.4e-29, P = 8.4e-29
Identities = 85/276 (30%), Positives = 135/276 (48%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L V NL+ SVDN+ L F GT+ +VA + +SRG+ + F+T AK A ++N
Sbjct: 136 LFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHMGQSRGYGFVQFDTEDSAKNAIEKLN 195
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G ++ K + + P R + + K V+VKNL E ++ELK+ F ++G+
Sbjct: 196 GKVLNDKQIFVG-----PFLRKEERESAADKMKFTNVYVKNLSEATTDDELKTTFGQYGS 250
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXXX 216
I ++RD +GKS+ FGF+ F + + A +A+ +NG+ +V A+
Sbjct: 251 ISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALNGKKFDDKEWYVGKAQKKSERELEL 310
Query: 217 XXXXXLLQPARKNK-----IFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHI 266
NK ++V NL + + + ELFA FGTITS ++ D K
Sbjct: 311 SRRYEQGSSDGGNKFDGLNLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGS 370
Query: 267 GFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ F A+ ++ MNG + KPL V L+ K
Sbjct: 371 GFVAFSAASEASRVLNEMNGKMVGGKPLYVALAQRK 406
Score = 247 (92.0 bits), Expect = 4.8e-20, P = 4.8e-20
Identities = 69/262 (26%), Positives = 124/262 (47%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L+ +V + L + F + + VRV R+ + S G+ + ++ +A+KA ++
Sbjct: 48 LYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQKL 107
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N + K + IT+ R VG +FVKNL ++VD + L F G
Sbjct: 108 NYSYLNGKMIRITYSSRDSSARRSGVG---------NLFVKNLDKSVDNKTLHEAFSGCG 158
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXX 215
I+ K+ D G+S+G+GF+QF + +A+ AI ++NG+++ FV
Sbjct: 159 TIVSCKVATDHMGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFVG-------PFLR 211
Query: 216 XXXXXXLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIE 270
+ ++V NL + E + F ++G+I+S+ ++ D + GF+
Sbjct: 212 KEERESAADKMKFTNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVN 271
Query: 271 FIMPKHATHAVSTMNGHVFKSK 292
F P+ A AV +NG F K
Sbjct: 272 FENPEDAARAVEALNGKKFDDK 293
Score = 144 (55.7 bits), Expect = 6.4e-07, P = 6.4e-07
Identities = 27/83 (32%), Positives = 49/83 (59%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L+V NL+ +V ++ L F +FGT+ +V R+ + S+G + F+ +EA + EMN
Sbjct: 330 LYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMN 389
Query: 97 GHLIGSKPVIITFVELKPGQRSK 119
G ++G KP+ + + K +R+K
Sbjct: 390 GKMVGGKPLYVALAQRKEERRAK 412
>SGD|S000000967 [details] [associations]
symbol:PAB1 "Poly(A) binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0008143 "poly(A) RNA binding"
evidence=IDA;IMP] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0005840 "ribosome" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0006446 "regulation of translational
initiation" evidence=IMP;IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0006810
"transport" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IMP;IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
SGD:S000000967 GO:GO:0005634 GO:GO:0000166 GO:GO:0006446
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005840 EMBL:BK006939
GO:GO:0051028 EMBL:U18922 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 GO:GO:0060211
GeneTree:ENSGT00640000091232 OrthoDB:EOG4QJVWJ EMBL:M12780
EMBL:M13371 EMBL:D00023 EMBL:AY692854 PIR:A25221 RefSeq:NP_011092.1
PDB:1IFW PDBsum:1IFW ProteinModelPortal:P04147 SMR:P04147
DIP:DIP-2275N IntAct:P04147 MINT:MINT-693056 STRING:P04147
PaxDb:P04147 PeptideAtlas:P04147 EnsemblFungi:YER165W GeneID:856912
KEGG:sce:YER165W OMA:ITEKNQQ EvolutionaryTrace:P04147
NextBio:983356 Genevestigator:P04147 GermOnline:YER165W
Uniprot:P04147
Length = 577
Score = 325 (119.5 bits), Expect = 1.1e-28, P = 1.1e-28
Identities = 77/276 (27%), Positives = 137/276 (49%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL P +DN+AL + F FG + ++A ++N +S+GF + F AK+A +N
Sbjct: 128 IFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALN 187
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G L+ + + + L +R + EE + ++VKN+ +E+ + F KFG
Sbjct: 188 GMLLNGQEIYVA-PHLSRKERDSQL--EETKAHYTNLYVKNINSETTDEQFQELFAKFGP 244
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXXX 216
I+ + +D +GK KGFGF+ + ++ A KA+ +N + +V A+
Sbjct: 245 IVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMHVL 304
Query: 217 XXXXXLLQPARKNK-----IFVANLPSNINNSEFEELFARFGTITSSSLV-----SDKHI 266
+ + K +FV NL ++++ + EE FA +GTITS+ ++ K
Sbjct: 305 KKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKSKGF 364
Query: 267 GFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ F P+ AT A++ N + KPL V ++ K
Sbjct: 365 GFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRK 400
Score = 301 (111.0 bits), Expect = 4.7e-26, P = 4.7e-26
Identities = 87/289 (30%), Positives = 131/289 (45%)
Query: 16 ISDDE--GARSXXXXXXXXXXXXLHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-ND 72
I DD+ A L+V +LEPSV L + F G++ +RV R+
Sbjct: 17 IQDDQKQAATGSESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITK 76
Query: 73 ESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDK 132
S G+A + FN +KA ++N I + I + + P R K G
Sbjct: 77 TSLGYAYVNFNDHEAGRKAIEQLNYTPIKGRLCRIMWSQRDPSLRKKGSG---------N 127
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMN 192
+F+KNL +D + L F FG+I+ KI DENGKSKGFGF+ F AA++AI +N
Sbjct: 128 IFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALN 187
Query: 193 GRMIQHNSTFVSLAEIXXXXXXXXXXXXXLLQPARKNKIFVANLPSNINNSEFEELFARF 252
G ++ +V+ + A ++V N+ S + +F+ELFA+F
Sbjct: 188 GMLLNGQEIYVA-PHLSRKERDSQLEETK----AHYTNLYVKNINSETTDEQFQELFAKF 242
Query: 253 GTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
G I S+SL D K GF+ + + A AV +N + L V
Sbjct: 243 GPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYV 291
Score = 168 (64.2 bits), Expect = 9.7e-10, P = 9.7e-10
Identities = 32/83 (38%), Positives = 50/83 (60%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L V NL+ SVD++ L EF +GT+ +V R +N +S+GF + F+TP EA KA E N
Sbjct: 324 LFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKN 383
Query: 97 GHLIGSKPVIITFVELKPGQRSK 119
++ KP+ + + K +RS+
Sbjct: 384 QQIVAGKPLYVAIAQRKDVRRSQ 406
>TAIR|locus:2199700 [details] [associations]
symbol:PAB3 "poly(A) binding protein 3" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006397
"mRNA processing" evidence=IGI] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AC003979 EMBL:Y12227
EMBL:AF293840 EMBL:AY054490 IPI:IPI00543342 PIR:T00768
RefSeq:NP_173690.1 UniGene:At.208 ProteinModelPortal:O64380
SMR:O64380 PaxDb:O64380 PRIDE:O64380 EnsemblPlants:AT1G22760.1
GeneID:838882 KEGG:ath:AT1G22760 TAIR:At1g22760 InParanoid:O64380
OMA:SSISHQK PhylomeDB:O64380 ProtClustDB:CLSN2679283
Genevestigator:O64380 GermOnline:AT1G22760 Uniprot:O64380
Length = 660
Score = 324 (119.1 bits), Expect = 2.3e-28, P = 2.3e-28
Identities = 77/276 (27%), Positives = 143/276 (51%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S+DN+AL F FGT+ +VA + S+G+ + F A+ A ++N
Sbjct: 138 IFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLN 197
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G L+ K V + ++ +R++ ++ V+VKNL + + E+EL+ F KFG
Sbjct: 198 GMLMNDKQVFVGHF-IRRQERARDENTPTPRFTN--VYVKNLPKEIGEDELRKTFGKFGV 254
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXXX 216
I ++RD++G S+ FGF+ F +AA A+ +MNG + + +V A+
Sbjct: 255 ISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREEEL 314
Query: 217 XXXXXLLQPARKNK-----IFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHI 266
+ R K +++ NL ++++ + +E+F+ +G +TSS ++ + +
Sbjct: 315 RRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGF 374
Query: 267 GFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ + P+ A A+S MNG + KPL + L+ K
Sbjct: 375 GFVAYSNPEEALRALSEMNGKMIGRKPLYIALAQRK 410
Score = 291 (107.5 bits), Expect = 8.5e-25, P = 8.5e-25
Identities = 77/255 (30%), Positives = 120/255 (47%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L+ +L+P V L + FK + VRV R++N S G+A I F+ P +A +A +N
Sbjct: 51 LYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDAYRAMEALN 110
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
+ +P+ I P R G K +F+KNL ++D + L F FG
Sbjct: 111 YTPLFDRPIRIMLSNRDPSTRLS--G-------KGNIFIKNLDASIDNKALFETFSSFGT 161
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXXX 216
I+ K+ D G+SKG+GF+QF ++A+ AI ++NG ++ FV
Sbjct: 162 ILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVG----HFIRRQER 217
Query: 217 XXXXXLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKH-----IGFIEF 271
P R ++V NLP I E + F +FG I+S+ ++ D+ GF+ F
Sbjct: 218 ARDENTPTP-RFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNF 276
Query: 272 IMPKHATHAVSTMNG 286
+ A AV MNG
Sbjct: 277 ECTEAAASAVEKMNG 291
Score = 153 (58.9 bits), Expect = 6.1e-08, P = 6.1e-08
Identities = 30/82 (36%), Positives = 48/82 (58%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L++ NL+ SVD++ L F ++G + +V N SRGF + ++ P EA +A EMN
Sbjct: 334 LYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMN 393
Query: 97 GHLIGSKPVIITFVELKPGQRS 118
G +IG KP+ I + K +R+
Sbjct: 394 GKMIGRKPLYIALAQRKEDRRA 415
Score = 145 (56.1 bits), Expect = 4.9e-07, P = 4.9e-07
Identities = 45/182 (24%), Positives = 79/182 (43%)
Query: 120 PVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFF 179
PV ++ + ++ +L V E L F N++ V++ RD+N +S G+ +I F
Sbjct: 38 PVVVADQTHPNSSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFS 97
Query: 180 SYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXXXXXXXXLLQPARKNKIFVANLPSN 239
+ A +A+ +N + + L+ K IF+ NL ++
Sbjct: 98 NPNDAYRAMEALNYTPLFDRPIRIMLSNRDPSTRLSG-----------KGNIFIKNLDAS 146
Query: 240 INNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
I+N E F+ FGTI S + D K GF++F + A A+ +NG + K +
Sbjct: 147 IDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQV 206
Query: 295 KV 296
V
Sbjct: 207 FV 208
>UNIPROTKB|H0YAR2 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519100
Uniprot:H0YAR2
Length = 284
Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
Identities = 78/239 (32%), Positives = 127/239 (53%)
Query: 74 SRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVII-TFVELKPGQRSKPVGPEEKQYKKDK 132
S+G+ + F T A++A +MNG L+ + V + F K +R +G K++
Sbjct: 9 SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK--EREAELGARAKEFTN-- 64
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMN 192
V++KN E +D+E LK FG + VK++ DE+GKSKGFGF+ F ++ A+KA+ EMN
Sbjct: 65 VYIKNFGEDMDDERLKD---LFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 121
Query: 193 GRMIQHNSTFVSLAEIXXXXXXXXXXXXXLLQPARKNK-----IFVANLPSNINNSEFEE 247
G+ + +V A+ ++ R + ++V NL I++ +
Sbjct: 122 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 181
Query: 248 LFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
F+ FGTITS+ ++ + K GF+ F P+ AT AV+ MNG + +KPL V L+ K
Sbjct: 182 EFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 240
Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
Identities = 57/179 (31%), Positives = 100/179 (55%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+++ N +D++ L + FG V+V +++ +S+GF + F +A+KA EMN
Sbjct: 65 VYIKNFGEDMDDERLKD---LFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 121
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKV--------FVKNLVETVDEEELK 148
G + K + + + K +R + + +Q K+D++ +VKNL + +D+E L+
Sbjct: 122 GKELNGKQIYVGRAQKKV-ERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 180
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
F FG I K++ E G+SKGFGF+ F S + A KA+ EMNGR++ +V+LA+
Sbjct: 181 KEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 238
>UNIPROTKB|Q4VY17 [details] [associations]
symbol:PABPC1L "EPAB" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:AL008725 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
HOVERGEN:HBG002295 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
EMBL:AL109839 UniGene:Hs.641481 HGNC:HGNC:15797 EMBL:EU190483
IPI:IPI00306870 SMR:Q4VY17 STRING:Q4VY17 Ensembl:ENST00000217074
Ensembl:ENST00000537323 Uniprot:Q4VY17
Length = 330
Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
Identities = 81/256 (31%), Positives = 129/256 (50%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L P V L +F G + +RV R+ S G+A I F PA+A++A M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N ++ +P+ I + + PG R VG +F+KNL +++D + L F FG
Sbjct: 73 NFEMLKGQPIRIMWSQRDPGLRKSGVG---------NIFIKNLEDSIDNKALYDTFSTFG 123
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXX 215
NI+ K+ DE+G S+GFGF+ F +++AA++AI MNG ++ FV
Sbjct: 124 NILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVG--HFKSRRERE 180
Query: 216 XXXXXXLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDK--H---IGFIE 270
L+ I+V NLP +++ ++LF++FG + S ++ D H GF+
Sbjct: 181 AELGARALE---FTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVN 237
Query: 271 FIMPKHATHAVSTMNG 286
F + A AV MNG
Sbjct: 238 FEKHEEAQKAVVHMNG 253
Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
Identities = 66/227 (29%), Positives = 122/227 (53%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NLE S+DN+AL + F FG + +VA +++ SRGF + F T A++A MN
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMN 159
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G L+ + V + + + +R +G ++ ++VKNL VDE+ L+ F +FG
Sbjct: 160 GMLLNDRKVFVGHFKSRR-EREAELGARALEFTN--IYVKNLPVDVDEQGLQDLFSQFGK 216
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXXX 216
++ VK++RD +G S+ FGF+ F ++ A+KA++ MNG+ + + A+
Sbjct: 217 MLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNEL 276
Query: 217 XXXXXLLQPARKNK-----IFVANLPSNINNSEFEELFARFGTITSS 258
++ R + ++V NL +I++ + + F+ +G ITS+
Sbjct: 277 KRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSA 323
Score = 154 (59.3 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 40/133 (30%), Positives = 69/133 (51%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
++V NL VD Q L + F +FG + V+V R+ + SR F + F EA+KA V MN
Sbjct: 193 IYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMN 252
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKV--------FVKNLVETVDEEELK 148
G + + + + K +R + +Q K+D++ +VKNL +++D+++L+
Sbjct: 253 GKEVSGRLLYAGRAQ-KRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLR 311
Query: 149 SHFIKFGNIIEVK 161
F +G I K
Sbjct: 312 KEFSPYGVITSAK 324
Score = 142 (55.0 bits), Expect = 3.1e-07, P = 3.1e-07
Identities = 45/174 (25%), Positives = 78/174 (44%)
Query: 128 YKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRD-ENGKSKGFGFIQFFSYKAAEK 186
Y ++V +L V E L F G I+ +++ RD +S G+ +I F AE+
Sbjct: 8 YPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAER 67
Query: 187 AIIEMNGRMIQHNSTFVSLAEIXXXXXXXXXXXXXLLQPARKNKIFVANLPSNINNSEFE 246
A+ MN M++ + ++ L+ + IF+ NL +I+N
Sbjct: 68 ALDTMNFEMLKGQPIRIMWSQRDPG-----------LRKSGVGNIFIKNLEDSIDNKALY 116
Query: 247 ELFARFGTITSSSLVSDKH----IGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
+ F+ FG I S + D+H GF+ F + A A++TMNG + + + V
Sbjct: 117 DTFSTFGNILSCKVACDEHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFV 170
>RGD|1311201 [details] [associations]
symbol:Pabpc6 "poly(A) binding protein, cytoplasmic 6"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1311201
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CH474059 EMBL:BC168959
IPI:IPI00214614 RefSeq:NP_001099678.1 UniGene:Rn.108830
MINT:MINT-7138834 Ensembl:ENSRNOT00000023319 GeneID:292295
KEGG:rno:292295 CTD:67543 OMA:HEDARKA OrthoDB:EOG41G360
NextBio:633994 Genevestigator:B5DF80 Uniprot:B5DF80
Length = 643
Score = 303 (111.7 bits), Expect = 1.0e-27, Sum P(2) = 1.0e-27
Identities = 84/267 (31%), Positives = 131/267 (49%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDE-SRGFAIIVFNTPAEAKKARVEM 95
L+V +L P V L +F G + +RV R++ S G+A + F +A++A M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRTTRRSLGYASVNFQQLEDAERALDTM 72
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N +I KPV I + + P R VG +FVKNL ++D + L F FG
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVG---------NIFVKNLDRSIDSKTLYDTFSAFG 123
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXX 215
NI+ K+V DENG SKG+GF+ F + + AE+AI +MNG + FV +
Sbjct: 124 NILSCKVVCDENG-SKGYGFVHFETQEEAERAIEKMNGMFLNDRKVFVGRFK------SR 176
Query: 216 XXXXXXLLQPARK-NKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFI 269
L A++ +++ NL ++++ ++LF+RFG S +++D K GF+
Sbjct: 177 RDRQAELGARAKEFTNVYIKNLGEDMDDERLQDLFSRFGPALSVKVMTDESGKSKGFGFV 236
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKV 296
F + A AV MNG K + V
Sbjct: 237 SFERHEDARKAVDEMNGKDLNGKQIYV 263
Score = 288 (106.4 bits), Expect = 4.6e-26, Sum P(2) = 4.6e-26
Identities = 71/242 (29%), Positives = 129/242 (53%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ V NL+ S+D++ L + F FG + +V ++N S+G+ + F T EA++A +MN
Sbjct: 101 IFVKNLDRSIDSKTLYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEEAERAIEKMN 159
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G + + V + + + ++++ +G K++ V++KNL E +D+E L+ F +FG
Sbjct: 160 GMFLNDRKVFVGRFKSRRDRQAE-LGARAKEFTN--VYIKNLGEDMDDERLQDLFSRFGP 216
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLA--------EI 208
+ VK++ DE+GKSKGFGF+ F ++ A KA+ EMNG+ + +V A E+
Sbjct: 217 ALSVKVMTDESGKSKGFGFVSFERHEDARKAVDEMNGKDLNGKQIYVGRAQKKVERQTEL 276
Query: 209 XXXXXXXXXXXXXLLQ-PARKN------KIFVANLPSNINNSEFEELFARFGTITSSSLV 261
+ Q P ++ ++V NL I++ + F+ FGTITS+ +
Sbjct: 277 KHKFGQMKQDKPKIEQVPQDRSVRCQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVT 336
Query: 262 SD 263
+
Sbjct: 337 ME 338
Score = 246 (91.7 bits), Expect = 1.7e-21, Sum P(2) = 1.7e-21
Identities = 62/188 (32%), Positives = 104/188 (55%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+++ NL +D++ L + F +FG V+V +++ +S+GF + F +A+KA EMN
Sbjct: 193 VYIKNLGEDMDDERLQDLFSRFGPALSVKVMTDESGKSKGFGFVSFERHEDARKAVDEMN 252
Query: 97 GHLIGSKPVII----------TFVELKPGQ--RSKPV---GPEEKQYKKDKV--FVKNLV 139
G + K + + T ++ K GQ + KP P+++ + V +VKNL
Sbjct: 253 GKDLNGKQIYVGRAQKKVERQTELKHKFGQMKQDKPKIEQVPQDRSVRCQGVNLYVKNLD 312
Query: 140 ETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHN 199
+ +D+E L+ F FG I K+ E G+SKGFGF+ F S + A KA+ EMNGR++
Sbjct: 313 DGIDDERLRKEFSPFGTITSAKVTM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 371
Query: 200 STFVSLAE 207
+V+LA+
Sbjct: 372 PLYVALAQ 379
Score = 153 (58.9 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 28/77 (36%), Positives = 46/77 (59%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L+V NL+ +D++ L EF FGT+ +V + S+GF + F++P EA KA EMN
Sbjct: 306 LYVKNLDDGIDDERLRKEFSPFGTITSAKVTM-EGGRSKGFGFVCFSSPEEATKAVTEMN 364
Query: 97 GHLIGSKPVIITFVELK 113
G ++ +KP+ + + K
Sbjct: 365 GRIVATKPLYVALAQRK 381
Score = 135 (52.6 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 44/171 (25%), Positives = 75/171 (43%)
Query: 121 VGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGK-SKGFGFIQFF 179
+ P + Y ++V +L V E L F G I+ +++ RD + S G+ + F
Sbjct: 1 MNPSDPSYSLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRTTRRSLGYASVNFQ 60
Query: 180 SYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXXXXXXXXLLQPARKNKIFVANLPSN 239
+ AE+A+ MN +I+ + ++ L+ + IFV NL +
Sbjct: 61 QLEDAERALDTMNFDVIKGKPVRIMWSQRDPS-----------LRKSGVGNIFVKNLDRS 109
Query: 240 INNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNG 286
I++ + F+ FG I S +V D K GF+ F + A A+ MNG
Sbjct: 110 IDSKTLYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEEAERAIEKMNG 160
Score = 129 (50.5 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 29/76 (38%), Positives = 44/76 (57%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNG 286
++V NL I++ + F+ FGTITS+ + + K GF+ F P+ AT AV+ MNG
Sbjct: 306 LYVKNLDDGIDDERLRKEFSPFGTITSAKVTMEGGRSKGFGFVCFSSPEEATKAVTEMNG 365
Query: 287 HVFKSKPLKVTLSGTK 302
+ +KPL V L+ K
Sbjct: 366 RIVATKPLYVALAQRK 381
Score = 38 (18.4 bits), Expect = 1.0e-27, Sum P(2) = 1.0e-27
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 287 HVFKSKPLKVTLSGTKPGVSITNPTKA 313
H F++ + S T P S + PT +
Sbjct: 456 HPFQNMSSAIHPSNTMPSFSTSGPTSS 482
>UNIPROTKB|H0YBQ4 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519596
Uniprot:H0YBQ4
Length = 258
Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
Identities = 67/196 (34%), Positives = 107/196 (54%)
Query: 116 QRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGF 175
+R +G K++ V++KN E +D+E LK F KFG + VK++ DE+GKSKGFGF
Sbjct: 11 EREAELGARAKEFTN--VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGF 68
Query: 176 IQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXXXXXXXXLLQPARKNK----- 230
+ F ++ A+KA+ EMNG+ + +V A+ ++ R +
Sbjct: 69 VSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVN 128
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNG 286
++V NL I++ + F+ FGTITS+ ++ + K GF+ F P+ AT AV+ MNG
Sbjct: 129 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 188
Query: 287 HVFKSKPLKVTLSGTK 302
+ +KPL V L+ K
Sbjct: 189 RIVATKPLYVALAQRK 204
Score = 260 (96.6 bits), Expect = 2.1e-22, P = 2.1e-22
Identities = 59/179 (32%), Positives = 102/179 (56%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+++ N +D++ L + F KFG V+V +++ +S+GF + F +A+KA EMN
Sbjct: 26 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 85
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKV--------FVKNLVETVDEEELK 148
G + K + + + K +R + + +Q K+D++ +VKNL + +D+E L+
Sbjct: 86 GKELNGKQIYVGRAQKKV-ERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 144
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
F FG I K++ E G+SKGFGF+ F S + A KA+ EMNGR++ +V+LA+
Sbjct: 145 KEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 202
Score = 152 (58.6 bits), Expect = 8.9e-09, P = 8.9e-09
Identities = 28/77 (36%), Positives = 46/77 (59%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L+V NL+ +D++ L EF FGT+ +V + S+GF + F++P EA KA EMN
Sbjct: 129 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMN 187
Query: 97 GHLIGSKPVIITFVELK 113
G ++ +KP+ + + K
Sbjct: 188 GRIVATKPLYVALAQRK 204
>UNIPROTKB|F1NH82 [details] [associations]
symbol:F1NH82 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 GeneTree:ENSGT00640000091232 EMBL:AADN02025122
EMBL:AADN02025123 EMBL:AADN02025124 IPI:IPI00574035
Ensembl:ENSGALT00000023332 Uniprot:F1NH82
Length = 469
Score = 289 (106.8 bits), Expect = 4.0e-25, P = 4.0e-25
Identities = 67/196 (34%), Positives = 107/196 (54%)
Query: 116 QRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGF 175
+R +G K++ V++KN E +D+E LK F KFG + VK++ DE+GKSKGFGF
Sbjct: 10 EREAELGARAKEFTN--VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGF 67
Query: 176 IQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXXXXXXXXLLQPARKNK----- 230
+ F ++ A+KA+ EMNG+ + +V A+ ++ R +
Sbjct: 68 VSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVN 127
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNG 286
++V NL I++ + F+ FGTITS+ ++ + K GF+ F P+ AT AV+ MNG
Sbjct: 128 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 187
Query: 287 HVFKSKPLKVTLSGTK 302
+ +KPL V L+ K
Sbjct: 188 RIVATKPLYVALAQRK 203
Score = 259 (96.2 bits), Expect = 9.3e-22, P = 9.3e-22
Identities = 59/179 (32%), Positives = 101/179 (56%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+++ N +D++ L F KFG V+V +++ +S+GF + F +A+KA EMN
Sbjct: 25 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 84
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKV--------FVKNLVETVDEEELK 148
G + K + + + K +R + + +Q K+D++ +VKNL + +D+E L+
Sbjct: 85 GKELNGKQIYVGRAQKKV-ERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 143
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
F FG I K++ E G+SKGFGF+ F S + A KA+ EMNGR++ +V+LA+
Sbjct: 144 KEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 201
Score = 156 (60.0 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 41/134 (30%), Positives = 67/134 (50%)
Query: 127 QYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEK 186
+Y+ ++VKNL + +D+E L+ F FG I K++ E G+SKGFGF+ F S + A K
Sbjct: 122 RYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATK 180
Query: 187 AIIEMNGRMIQHNSTFVSLAE--------IXXXXXXXXXXXXXL-------LQPARKNKI 231
A+ EMNGR++ +V+LA+ + + QPA +
Sbjct: 181 AVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGY 240
Query: 232 FVANLPSNINNSEF 245
F+A +P N + +
Sbjct: 241 FMAAIPQTQNRAAY 254
Score = 152 (58.6 bits), Expect = 4.6e-08, P = 4.6e-08
Identities = 28/77 (36%), Positives = 46/77 (59%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L+V NL+ +D++ L EF FGT+ +V + S+GF + F++P EA KA EMN
Sbjct: 128 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMN 186
Query: 97 GHLIGSKPVIITFVELK 113
G ++ +KP+ + + K
Sbjct: 187 GRIVATKPLYVALAQRK 203
>UNIPROTKB|Q5JQF3 [details] [associations]
symbol:PABPC5 "Polyadenylate-binding protein 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG002295 EMBL:AL662874 UniGene:Hs.246590 HGNC:HGNC:13629
IPI:IPI00647470 SMR:Q5JQF3 STRING:Q5JQF3 Ensembl:ENST00000373105
HOGENOM:HOG000138175 OrthoDB:EOG4X3H3C Uniprot:Q5JQF3
Length = 218
Score = 281 (104.0 bits), Expect = 1.2e-24, P = 1.2e-24
Identities = 67/213 (31%), Positives = 120/213 (56%)
Query: 95 MNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKF 154
MNG + ++ V + + P +R+ V ++ + VFVKN+ + +D+E+LK F ++
Sbjct: 1 MNGVRLNNRQVYVGRFKF-PEERAAEVRTRDRATFTN-VFVKNIGDDIDDEKLKELFCEY 58
Query: 155 GNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXX 214
G VK++RD +GKSKGFGF+++ +++AA+KA+++++G+ I +V A+
Sbjct: 59 GPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLA 118
Query: 215 XXXXXXXLLQPARKNK-----IFVANLPSNINNSEFEELFARFGTITSSSLVSD----KH 265
L+ K++ I++ NL IN+ + +E F+ FG+I+ + ++ + K
Sbjct: 119 ELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGKG 178
Query: 266 IGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTL 298
G + F + AT AV MNG + SKPL VTL
Sbjct: 179 FGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTL 211
Score = 230 (86.0 bits), Expect = 3.1e-19, P = 3.1e-19
Identities = 54/176 (30%), Positives = 99/176 (56%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
V N+ +D++ L F ++G V+V R+ + +S+GF + + T A+KA ++++G
Sbjct: 39 VKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGK 98
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDK-------VFVKNLVETVDEEELKSHF 151
I K + + + K + ++ E+ K+K +++KNL ET+++E+LK F
Sbjct: 99 SIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEF 158
Query: 152 IKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
FG+I K++ E G+ KGFG + F S++ A KA+ EMNGR++ V+L +
Sbjct: 159 SSFGSISRAKVMM-EVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQ 213
Score = 132 (51.5 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 24/72 (33%), Positives = 46/72 (63%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+++ NL+ +++++ L EF FG++ +V + +GF ++ F++ EA KA EMN
Sbjct: 140 IYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVG-QGKGFGVVCFSSFEEATKAVDEMN 198
Query: 97 GHLIGSKPVIIT 108
G ++GSKP+ +T
Sbjct: 199 GRIVGSKPLHVT 210
>TAIR|locus:2040625 [details] [associations]
symbol:PAB7 "poly(A) binding protein 7" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC006282 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 IPI:IPI00535861 PIR:B84783 RefSeq:NP_181204.1
UniGene:At.37531 UniGene:At.50119 ProteinModelPortal:Q9ZQA8
SMR:Q9ZQA8 PaxDb:Q9ZQA8 PRIDE:Q9ZQA8 EnsemblPlants:AT2G36660.1
GeneID:818238 KEGG:ath:AT2G36660 TAIR:At2g36660 InParanoid:Q9ZQA8
OMA:RSLCYGY PhylomeDB:Q9ZQA8 ProtClustDB:CLSN2913328
Genevestigator:Q9ZQA8 GermOnline:AT2G36660 Uniprot:Q9ZQA8
Length = 609
Score = 288 (106.4 bits), Expect = 1.5e-24, P = 1.5e-24
Identities = 82/274 (29%), Positives = 130/274 (47%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
V NL SV N L + FKKFG + +VA ++ +SRG+ + F A A +N
Sbjct: 116 VKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTLNST 175
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
++ K + + +K R KP EEK Y +++KNL V E+ L+ F +FG I+
Sbjct: 176 IVADKEIYVGKF-MKKTDRVKP---EEK-YTN--LYMKNLDADVSEDLLREKFAEFGKIV 228
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXXXXX 218
+ I +DEN +G+ F+ F + + A +A +NG +V A+
Sbjct: 229 SLAIAKDENRLCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQKKAEREQLLRE 288
Query: 219 XXXLLQPARK-----NKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGF 268
+K + I+V N+ + E + F++ GTITS+ L+ D K GF
Sbjct: 289 QFKEKHEEQKMIAKVSNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGF 348
Query: 269 IEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
+ F P+ A AV T +G +F KPL V ++ K
Sbjct: 349 VCFSTPEEAIDAVKTFHGQMFHGKPLYVAIAQKK 382
Score = 264 (98.0 bits), Expect = 5.9e-22, P = 5.9e-22
Identities = 83/267 (31%), Positives = 126/267 (47%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKND-ESRGFAIIVFNTPAEAKKARVEM 95
L+V +L PSV L + F +F +L VR+ ++ + S + F + +A A +
Sbjct: 26 LYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEKK 85
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N L+ K + + + P R VG VFVKNL E+V L+ F KFG
Sbjct: 86 NNSLLNGKMIRVMWSVRAPDARRNGVG---------NVFVKNLPESVTNAVLQDMFKKFG 136
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXX 215
NI+ K+ E+GKS+G+GF+QF AA AI +N ST V+ EI
Sbjct: 137 NIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTLN-------STIVADKEIYVGKFMK 189
Query: 216 XXXXXXLLQPARK-NKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKH-----IGFI 269
++P K +++ NL ++++ E FA FG I S ++ D++ F+
Sbjct: 190 KTDR---VKPEEKYTNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFV 246
Query: 270 EFIMPKHATHAVSTMNGHVFKSKPLKV 296
F P+ A A T+NG F SK L V
Sbjct: 247 NFDNPEDARRAAETVNGTKFGSKCLYV 273
Score = 250 (93.1 bits), Expect = 1.9e-20, P = 1.9e-20
Identities = 57/178 (32%), Positives = 97/178 (54%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L++ NL+ V L +F +FG + + +A+++N RG+A + F+ P +A++A +N
Sbjct: 203 LYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAETVN 262
Query: 97 GHLIGSKPVIITFVELKPGQRS------KPVGPEEKQYKK-DKVFVKNLVETVDEEELKS 149
G GSK + + + K + K E+K K ++VKN+ V EEEL+
Sbjct: 263 GTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEELRK 322
Query: 150 HFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
HF + G I K++ DE GKSKGFGF+ F + + A A+ +G+M +V++A+
Sbjct: 323 HFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIAQ 380
>TAIR|locus:2094922 [details] [associations]
symbol:PAB6 "poly(A) binding protein 6" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0016071 GO:GO:0000166
GO:GO:0006413 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AB023046
EMBL:AC001645 eggNOG:COG0724 KO:K13126 HOGENOM:HOG000217922
HSSP:P11940 IPI:IPI00530520 RefSeq:NP_188259.1 UniGene:At.51274
ProteinModelPortal:O04319 SMR:O04319 EnsemblPlants:AT3G16380.1
GeneID:820885 KEGG:ath:AT3G16380 TAIR:At3g16380 InParanoid:O04319
OMA:CKVVEEN PhylomeDB:O04319 ProtClustDB:CLSN2913349
Genevestigator:O04319 Uniprot:O04319
Length = 537
Score = 283 (104.7 bits), Expect = 3.5e-24, P = 3.5e-24
Identities = 75/276 (27%), Positives = 138/276 (50%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L+V NL+ S+ + L F FG++ +V +N +S+GF + F+T A AR ++
Sbjct: 114 LYVKNLDSSITSSCLERMFCPFGSILSCKVVE-ENGQSKGFGFVQFDTEQSAVSARSALH 172
Query: 97 GHLI-GSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
G ++ G K + F+ +R+ G ++ V+VKNL+ETV ++ L + F ++G
Sbjct: 173 GSMVYGKKLFVAKFIN--KDERAAMAGNQDST----NVYVKNLIETVTDDCLHTLFSQYG 226
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLA---EIXXXX 212
+ V ++RD G+S+GFGF+ F + + A+KA+ + G + FV A +
Sbjct: 227 TVSSVVVMRDGMGRSRGFGFVNFCNPENAKKAMESLCGLQLGSKKLFVGKALKKDERREM 286
Query: 213 XXXXXXXXXLLQP-ARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS-----DKHI 266
+ +P R + ++V NL ++N + E+F +G I S+ ++ K
Sbjct: 287 LKQKFSDNFIAKPNMRWSNLYVKNLSESMNETRLREIFGCYGQIVSAKVMCHENGRSKGF 346
Query: 267 GFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ F + + A +NG + KP+ V ++ K
Sbjct: 347 GFVCFSNCEESKQAKRYLNGFLVDGKPIVVRVAERK 382
Score = 221 (82.9 bits), Expect = 1.6e-16, P = 1.6e-16
Identities = 70/266 (26%), Positives = 125/266 (46%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L P V + LI++F + V + RN +S +A I F++P A A +
Sbjct: 23 LYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSASNAMTRL 82
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N + K + I + + R + + ++VKNL ++ L+ F FG
Sbjct: 83 NHSDLKGKAMRIMWSQRDLAYRRRT------RTGFANLYVKNLDSSITSSCLERMFCPFG 136
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXX 215
+I+ K+V +ENG+SKGFGF+QF + ++A A ++G M+ FV+
Sbjct: 137 SILSCKVV-EENGQSKGFGFVQFDTEQSAVSARSALHGSMVYGKKLFVA-------KFIN 188
Query: 216 XXXXXXLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIE 270
+ ++V NL + + LF+++GT++S ++ D + GF+
Sbjct: 189 KDERAAMAGNQDSTNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGMGRSRGFGFVN 248
Query: 271 FIMPKHATHAVSTMNGHVFKSKPLKV 296
F P++A A+ ++ G SK L V
Sbjct: 249 FCNPENAKKAMESLCGLQLGSKKLFV 274
>UNIPROTKB|H3BPI5 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL359757 HGNC:HGNC:8556 ProteinModelPortal:H3BPI5 SMR:H3BPI5
Ensembl:ENST00000562709 Bgee:H3BPI5 Uniprot:H3BPI5
Length = 255
Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
Identities = 59/159 (37%), Positives = 95/159 (59%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ V NL+ S++N+AL + FG + V ++N S+G+ + F T A++A +MN
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMN 159
Query: 97 GHLIGSKPVII-TFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
G L+ + V + F K +R +G K++ V++KN E +D+E LK F KFG
Sbjct: 160 GMLLNGRKVFVGQFKSRK--EREAELGARAKEFPN--VYIKNFGEDMDDERLKDLFGKFG 215
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGR 194
+ VK++ DE+GKSKGFGF+ F ++ A+KA+ EMNG+
Sbjct: 216 PALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGK 254
Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
Identities = 75/256 (29%), Positives = 122/256 (47%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L P V L +F G + +R+ R+ S +A + F +A+ A M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDTM 72
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N +I KPV I + + P R VG +FVKNL ++++ + L FG
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVG---------NIFVKNLDKSINNKALYDTVSAFG 123
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXX 215
NI+ +V DENG SKG+GF+ F +++AAE+AI +MNG ++ FV +
Sbjct: 124 NILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAE 182
Query: 216 XXXXXXLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIE 270
P +++ N ++++ ++LF +FG S +++D K GF+
Sbjct: 183 LGARAKEF-P----NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVS 237
Query: 271 FIMPKHATHAVSTMNG 286
F + A AV MNG
Sbjct: 238 FERHEDAQKAVDEMNG 253
Score = 132 (51.5 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 47/181 (25%), Positives = 76/181 (41%)
Query: 121 VGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFF 179
+ P Y ++V +L V E L F G I+ ++I RD S + ++ F
Sbjct: 1 MNPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQ 60
Query: 180 SYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXXXXXXXXLLQPARKNKIFVANLPSN 239
K AE A+ MN +I+ + ++ L+ + IFV NL +
Sbjct: 61 HTKDAEHALDTMNFDVIKGKPVRIMWSQRDPS-----------LRKSGVGNIFVKNLDKS 109
Query: 240 INNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLK 295
INN + + FG I S ++V D K GF+ F + A A+ MNG + + +
Sbjct: 110 INNKALYDTVSAFGNILSCNVVCDENGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVF 169
Query: 296 V 296
V
Sbjct: 170 V 170
>RGD|1566367 [details] [associations]
symbol:Pabpc1l2a "poly(A) binding protein, cytoplasmic 1-like
2A" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1566367 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00640000091232
IPI:IPI00769098 Ensembl:ENSRNOT00000029100 Uniprot:F1M8Y9
Length = 200
Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
Identities = 58/168 (34%), Positives = 89/168 (52%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L P V L +F G + +R+ R+K S G+A + + P +AK+A M
Sbjct: 4 LYVGDLHPEVTESMLYEKFSPAGPILSIRLCRDKVTRRSLGYAYVNYQQPVDAKRALETM 63
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N +I +PV I + + P R VG VF+KNL +T+D + L + F FG
Sbjct: 64 NFDVINGRPVRIMWSQRDPSLRKSGVG---------NVFIKNLGKTIDNKALYNIFSAFG 114
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFV 203
NI+ K+ DE G KG+GF+ F ++AE+AI +NG + + FV
Sbjct: 115 NILSCKVACDEKGP-KGYGFVHFQKQESAERAIDALNGMFLNYRKIFV 161
Score = 112 (44.5 bits), Expect = 0.00022, P = 0.00022
Identities = 37/159 (23%), Positives = 69/159 (43%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEM 191
++V +L V E L F G I+ +++ RD+ +S G+ ++ + A++A+ M
Sbjct: 4 LYVGDLHPEVTESMLYEKFSPAGPILSIRLCRDKVTRRSLGYAYVNYQQPVDAKRALETM 63
Query: 192 NGRMIQHNSTFVSLAEIXXXXXXXXXXXXXLLQPARKNKIFVANLPSNINNSEFEELFAR 251
N +I + ++ L+ + +F+ NL I+N +F+
Sbjct: 64 NFDVINGRPVRIMWSQRDPS-----------LRKSGVGNVFIKNLGKTIDNKALYNIFSA 112
Query: 252 FGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNG 286
FG I S + D K GF+ F + A A+ +NG
Sbjct: 113 FGNILSCKVACDEKGPKGYGFVHFQKQESAERAIDALNG 151
>UNIPROTKB|H0YCC8 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL365277 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000474378 Uniprot:H0YCC8
Length = 197
Score = 247 (92.0 bits), Expect = 4.9e-21, P = 4.9e-21
Identities = 54/135 (40%), Positives = 80/135 (59%)
Query: 74 SRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVII-TFVELKPGQRSKPVGPEEKQYKKDK 132
S+G+A + F T A KA +MNG L+ + V + F K +R +G + K++
Sbjct: 50 SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK--EREAELGAKAKEFTN-- 105
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMN 192
V++KN E VD+E LK F +FG + VK++RD NGKSKGFGF+ + ++ A KA+ EMN
Sbjct: 106 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMN 165
Query: 193 GRMIQHNSTFVSLAE 207
G+ I FV A+
Sbjct: 166 GKEISGKIIFVGRAQ 180
Score = 147 (56.8 bits), Expect = 6.3e-10, P = 6.3e-10
Identities = 40/137 (29%), Positives = 66/137 (48%)
Query: 162 IVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXXXXXXXX 221
+V DENG SKG+ F+ F + +AA+KAI +MNG ++ FV +
Sbjct: 43 VVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFK------SRKEREAE 95
Query: 222 LLQPARK-NKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPK 275
L A++ +++ N +++ +ELF++FG S ++ D K GF+ + +
Sbjct: 96 LGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHE 155
Query: 276 HATHAVSTMNGHVFKSK 292
A AV MNG K
Sbjct: 156 DANKAVEEMNGKEISGK 172
Score = 114 (45.2 bits), Expect = 0.00012, P = 0.00012
Identities = 23/71 (32%), Positives = 39/71 (54%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+++ N VD+++L F +FG V+V R+ N +S+GF + + +A KA EMN
Sbjct: 106 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMN 165
Query: 97 GHLIGSKPVII 107
G I K + +
Sbjct: 166 GKEISGKIIFV 176
>UNIPROTKB|G3MZ94 [details] [associations]
symbol:PABPC1L2A "Uncharacterized protein" species:9913
"Bos taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 CTD:340529 OMA:DSANKVY GeneID:521086
KEGG:bta:521086 EMBL:DAAA02072607 RefSeq:XP_003588203.1
Ensembl:ENSBTAT00000064260 Uniprot:G3MZ94
Length = 200
Score = 247 (92.0 bits), Expect = 4.9e-21, P = 4.9e-21
Identities = 58/168 (34%), Positives = 89/168 (52%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L P V L +F G + +R+ R+K S G+A + + P +AK+A +
Sbjct: 4 LYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETL 63
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N +I +PV I + + P R VG VF+KNL +T+D + L + F FG
Sbjct: 64 NFDVIKGRPVRIMWSQRDPSLRKSGVG---------NVFIKNLGKTIDNKALYNIFSAFG 114
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFV 203
NI+ K+ DE G KG+GF+ F ++AE+AI MNG + + FV
Sbjct: 115 NILSCKVACDEKGP-KGYGFVHFQKQESAERAIDAMNGMFLNYRKIFV 161
Score = 114 (45.2 bits), Expect = 0.00013, P = 0.00013
Identities = 38/159 (23%), Positives = 70/159 (44%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEM 191
++V +L V E L F G I+ ++I RD+ +S G+ ++ + A++A+ +
Sbjct: 4 LYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETL 63
Query: 192 NGRMIQHNSTFVSLAEIXXXXXXXXXXXXXLLQPARKNKIFVANLPSNINNSEFEELFAR 251
N +I+ + ++ L+ + +F+ NL I+N +F+
Sbjct: 64 NFDVIKGRPVRIMWSQRDPS-----------LRKSGVGNVFIKNLGKTIDNKALYNIFSA 112
Query: 252 FGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNG 286
FG I S + D K GF+ F + A A+ MNG
Sbjct: 113 FGNILSCKVACDEKGPKGYGFVHFQKQESAERAIDAMNG 151
>UNIPROTKB|F1RPL9 [details] [associations]
symbol:LOC100623240 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 EMBL:FP236342 RefSeq:XP_003135232.1
RefSeq:XP_003360416.1 Ensembl:ENSSSCT00000023519
Ensembl:ENSSSCT00000025081 GeneID:100525442 GeneID:100623240
KEGG:ssc:100525442 KEGG:ssc:100623240 OMA:DSANKVY Uniprot:F1RPL9
Length = 200
Score = 247 (92.0 bits), Expect = 4.9e-21, P = 4.9e-21
Identities = 58/168 (34%), Positives = 89/168 (52%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L P V L +F G + +R+ R+K S G+A + + P +AK+A +
Sbjct: 4 LYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETL 63
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N +I +PV I + + P R VG VF+KNL +T+D + L + F FG
Sbjct: 64 NFDVIKGRPVRIMWSQRDPSLRKSGVG---------NVFIKNLGKTIDNKALYNIFSAFG 114
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFV 203
NI+ K+ DE G KG+GF+ F ++AE+AI MNG + + FV
Sbjct: 115 NILSCKVACDEKGP-KGYGFVHFQKQESAERAIDAMNGMFLNYRKIFV 161
Score = 114 (45.2 bits), Expect = 0.00013, P = 0.00013
Identities = 38/159 (23%), Positives = 70/159 (44%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEM 191
++V +L V E L F G I+ ++I RD+ +S G+ ++ + A++A+ +
Sbjct: 4 LYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETL 63
Query: 192 NGRMIQHNSTFVSLAEIXXXXXXXXXXXXXLLQPARKNKIFVANLPSNINNSEFEELFAR 251
N +I+ + ++ L+ + +F+ NL I+N +F+
Sbjct: 64 NFDVIKGRPVRIMWSQRDPS-----------LRKSGVGNVFIKNLGKTIDNKALYNIFSA 112
Query: 252 FGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNG 286
FG I S + D K GF+ F + A A+ MNG
Sbjct: 113 FGNILSCKVACDEKGPKGYGFVHFQKQESAERAIDAMNG 151
>UNIPROTKB|Q5JQF8 [details] [associations]
symbol:PABPC1L2A "Polyadenylate-binding protein 1-like 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471104 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
HOGENOM:HOG000217922 HSSP:P11940 EMBL:AL662864 EMBL:BC041956
EMBL:BC136492 IPI:IPI00217142 RefSeq:NP_001012995.1
RefSeq:NP_001035971.1 UniGene:Hs.450320 UniGene:Hs.567854
ProteinModelPortal:Q5JQF8 SMR:Q5JQF8 PhosphoSite:Q5JQF8
PaxDb:Q5JQF8 PRIDE:Q5JQF8 Ensembl:ENST00000373519
Ensembl:ENST00000373521 Ensembl:ENST00000453389
Ensembl:ENST00000538388 GeneID:340529 GeneID:645974 KEGG:hsa:340529
KEGG:hsa:645974 UCSC:uc004ebf.3 CTD:340529 CTD:645974
GeneCards:GC0XM072297 GeneCards:GC0XP072223 H-InvDB:HIX0056425
HGNC:HGNC:27989 HGNC:HGNC:31852 HPA:HPA041573 neXtProt:NX_Q5JQF8
PharmGKB:PA162398594 InParanoid:Q5JQF8 OMA:RIMYSHC
OrthoDB:EOG4QVCCZ NextBio:97904 Bgee:Q5JQF8 CleanEx:HS_PABPC1L2A
CleanEx:HS_PABPC1L2B Genevestigator:Q5JQF8 Uniprot:Q5JQF8
Length = 200
Score = 246 (91.7 bits), Expect = 6.3e-21, P = 6.3e-21
Identities = 58/168 (34%), Positives = 89/168 (52%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L P V L +F G + +R+ R+K S G+A + + P +AK+A +
Sbjct: 4 LYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETL 63
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N +I +PV I + + P R VG VF+KNL +T+D + L + F FG
Sbjct: 64 NFDVIKGRPVRIMWSQRDPSLRKSGVG---------NVFIKNLGKTIDNKALYNIFSAFG 114
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFV 203
NI+ K+ DE G KG+GF+ F ++AE+AI MNG + + FV
Sbjct: 115 NILSCKVACDEKGP-KGYGFVHFQKQESAERAIDVMNGMFLNYRKIFV 161
Score = 114 (45.2 bits), Expect = 0.00013, P = 0.00013
Identities = 38/159 (23%), Positives = 70/159 (44%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEM 191
++V +L V E L F G I+ ++I RD+ +S G+ ++ + A++A+ +
Sbjct: 4 LYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETL 63
Query: 192 NGRMIQHNSTFVSLAEIXXXXXXXXXXXXXLLQPARKNKIFVANLPSNINNSEFEELFAR 251
N +I+ + ++ L+ + +F+ NL I+N +F+
Sbjct: 64 NFDVIKGRPVRIMWSQRDPS-----------LRKSGVGNVFIKNLGKTIDNKALYNIFSA 112
Query: 252 FGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNG 286
FG I S + D K GF+ F + A A+ MNG
Sbjct: 113 FGNILSCKVACDEKGPKGYGFVHFQKQESAERAIDVMNG 151
>UNIPROTKB|G3MYW4 [details] [associations]
symbol:PABPC1L2A "Uncharacterized protein" species:9913
"Bos taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 CTD:340529 EMBL:DAAA02072604
RefSeq:XP_002700050.1 RefSeq:XP_003584787.1 RefSeq:XP_599343.3
ProteinModelPortal:G3MYW4 Ensembl:ENSBTAT00000066058 GeneID:521086
GeneID:784438 KEGG:bta:521086 KEGG:bta:784438 OMA:ILSIRLC
NextBio:20873237 Uniprot:G3MYW4
Length = 200
Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
Identities = 58/168 (34%), Positives = 89/168 (52%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L P V L +F G + +R+ R+K S G+A + + P +AK+A +
Sbjct: 4 LYVGDLHPEVTEAMLYEKFSPAGPILSIRLCRDKITRRSLGYAYVNYQQPVDAKRALETL 63
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N +I +PV I + + P R VG VF+KNL +T+D + L + F FG
Sbjct: 64 NFDVIKGRPVRIMWSQRDPSLRKSGVG---------NVFIKNLGKTIDNKALYNIFSAFG 114
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFV 203
NI+ K+ DE G KG+GF+ F ++AE+AI MNG + + FV
Sbjct: 115 NILSCKVACDEKGP-KGYGFVHFQKQESAERAIDAMNGMFLNYRKIFV 161
Score = 112 (44.5 bits), Expect = 0.00022, P = 0.00022
Identities = 37/159 (23%), Positives = 70/159 (44%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEM 191
++V +L V E L F G I+ +++ RD+ +S G+ ++ + A++A+ +
Sbjct: 4 LYVGDLHPEVTEAMLYEKFSPAGPILSIRLCRDKITRRSLGYAYVNYQQPVDAKRALETL 63
Query: 192 NGRMIQHNSTFVSLAEIXXXXXXXXXXXXXLLQPARKNKIFVANLPSNINNSEFEELFAR 251
N +I+ + ++ L+ + +F+ NL I+N +F+
Sbjct: 64 NFDVIKGRPVRIMWSQRDPS-----------LRKSGVGNVFIKNLGKTIDNKALYNIFSA 112
Query: 252 FGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNG 286
FG I S + D K GF+ F + A A+ MNG
Sbjct: 113 FGNILSCKVACDEKGPKGYGFVHFQKQESAERAIDAMNG 151
>FB|FBgn0035016 [details] [associations]
symbol:CG4612 species:7227 "Drosophila melanogaster"
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE013599 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0008143 HSSP:P11940 eggNOG:NOG246493
GeneTree:ENSGT00630000089747 EMBL:AY060413 RefSeq:NP_001246492.1
RefSeq:NP_001246493.1 RefSeq:NP_611924.1 UniGene:Dm.773 SMR:Q9W158
IntAct:Q9W158 MINT:MINT-870450 STRING:Q9W158
EnsemblMetazoa:FBtr0072346 EnsemblMetazoa:FBtr0306137 GeneID:37914
KEGG:dme:Dmel_CG4612 UCSC:CG4612-RA FlyBase:FBgn0035016
InParanoid:Q9W158 OMA:EPYGRIT OrthoDB:EOG4KPRS4 GenomeRNAi:37914
NextBio:806022 Uniprot:Q9W158
Length = 307
Score = 227 (85.0 bits), Expect = 6.5e-19, P = 6.5e-19
Identities = 50/171 (29%), Positives = 100/171 (58%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+++ NLE S+DN+A+ + F FG + + VA++++ SRG+ + F++ A+ A ++N
Sbjct: 115 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVN 174
Query: 97 GHLIGSKPV-IITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
G L ++ V ++ F+ + ++ K +K ++VKNL E E+ L+ F +G
Sbjct: 175 GMLCNNQKVHVVKFIPRRDREQEKAT-----HFKN--LYVKNLSEEFTEQHLREMFEPYG 227
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLA 206
I K++ DE G+S+ FGF+ + + ++A A+I ++G+ + N F+ +A
Sbjct: 228 RITSHKLMLDEEGRSRRFGFVAYENPQSALAAVIGLHGKQLGDNK-FLYVA 277
Score = 188 (71.2 bits), Expect = 7.3e-13, P = 7.3e-13
Identities = 47/160 (29%), Positives = 79/160 (49%)
Query: 132 KVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEM 191
K+++KNL ++D + + F FGNI+ + +DE+G S+G+GF+ F S +AA AI ++
Sbjct: 114 KIYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKV 173
Query: 192 NGRMIQHNSTFVSLAEIXXXXXXXXXXXXXLLQPARKNKIFVANLPSNINNSEFEELFAR 251
NG + N+ V + + KN ++V NL E+F
Sbjct: 174 NGMLC--NNQKVHVVKFIPRRDREQEKATHF-----KN-LYVKNLSEEFTEQHLREMFEP 225
Query: 252 FGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNG 286
+G ITS L+ D + GF+ + P+ A AV ++G
Sbjct: 226 YGRITSHKLMLDEEGRSRRFGFVAYENPQSALAAVIGLHG 265
>DICTYBASE|DDB_G0274523 [details] [associations]
symbol:DDB_G0274523 "RNA recognition motif-containing
protein RRM" species:44689 "Dictyostelium discoideum" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0274523 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000012 eggNOG:COG0724
RefSeq:XP_644081.1 ProteinModelPortal:Q86HL7 PRIDE:Q86HL7
EnsemblProtists:DDB0233759 GeneID:8619510 KEGG:ddi:DDB_G0274523
InParanoid:Q86HL7 OMA:QNNHHDP Uniprot:Q86HL7
Length = 904
Score = 195 (73.7 bits), Expect = 1.0e-18, Sum P(2) = 1.0e-18
Identities = 51/164 (31%), Positives = 84/164 (51%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
V +L +++ L N F K+G + +V + S G+ + F++P E+ A E++G+
Sbjct: 113 VKHLPYEFNDEDLENLFSKYGKVLSSKVMIDPKGNSYGYGFVRFSSPQESAAAIEELDGY 172
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
+K ++ L SK Y + +F+K L V +++L+ F FG II
Sbjct: 173 QYQNKKLLCRLSNLYTNLNSK--------YPSNNLFIKPLPYDVTDDQLRKLFEPFGKII 224
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTF 202
E K++ D NG+SK GF++F S A KAI MNG I +S +
Sbjct: 225 ECKVMLDHNGQSKFAGFVRFSSELDASKAIDAMNGVRINKDSGY 268
Score = 187 (70.9 bits), Expect = 2.4e-11, Sum P(2) = 2.4e-11
Identities = 53/192 (27%), Positives = 95/192 (49%)
Query: 121 VGPEEKQYKKDK--VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQF 178
V +E + ++D+ VFVK+L ++E+L++ F K+G ++ K++ D G S G+GF++F
Sbjct: 97 VNNKELELERDQTNVFVKHLPYEFNDEDLENLFSKYGKVLSSKVMIDPKGNSYGYGFVRF 156
Query: 179 FSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXXXXXXXXLLQPARKNKIFVANLPS 238
S + + AI E++G Q+ L+ + P+ N +F+ LP
Sbjct: 157 SSPQESAAAIEELDGYQYQNKKLLCRLSNLYTNLNSKY--------PS--NNLFIKPLPY 206
Query: 239 NINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNG-HVFKSK 292
++ + + +LF FG I ++ D K GF+ F A+ A+ MNG + K
Sbjct: 207 DVTDDQLRKLFEPFGKIIECKVMLDHNGQSKFAGFVRFSSELDASKAIDAMNGVRINKDS 266
Query: 293 --PLKVTLSGTK 302
PL V + T+
Sbjct: 267 GYPLVVKYADTE 278
Score = 134 (52.2 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 42/117 (35%), Positives = 60/117 (51%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKND-ESRGFAIIVFNTPAEAKKARVEM 95
L V +L P VD+ L F +FG L+ VRV +K+ E++G+ + F EA K + EM
Sbjct: 771 LFVFHLPPFVDDSYLFQLFSQFGKLQSVRVITDKDTGENKGYGFVKFYQTDEALKCQKEM 830
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVET-VDEEELKSHF 151
NG IGSK V+LK + S G Q++ KN E ++EEE + F
Sbjct: 831 NGFRIGSK---FLKVKLKNEKESMNSGKSHHQHQNQN---KNQNEQHLEEEEEEQTF 881
Score = 108 (43.1 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 24/69 (34%), Positives = 40/69 (57%)
Query: 126 KQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDEN-GKSKGFGFIQFFSYKAA 184
K +FV +L VD+ L F +FG + V+++ D++ G++KG+GF++F+ A
Sbjct: 764 KHTNDTNLFVFHLPPFVDDSYLFQLFSQFGKLQSVRVITDKDTGENKGYGFVKFYQTDEA 823
Query: 185 EKAIIEMNG 193
K EMNG
Sbjct: 824 LKCQKEMNG 832
Score = 99 (39.9 bits), Expect = 1.0e-18, Sum P(2) = 1.0e-18
Identities = 26/82 (31%), Positives = 42/82 (51%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSDKHIG------FIEFIMPKHATHAVSTM 284
+FV +LP +++S +LF++FG + S +++DK G F++F A M
Sbjct: 771 LFVFHLPPFVDDSYLFQLFSQFGKLQSVRVITDKDTGENKGYGFVKFYQTDEALKCQKEM 830
Query: 285 NGHVFKSKPLKVTLSGTKPGVS 306
NG SK LKV L K ++
Sbjct: 831 NGFRIGSKFLKVKLKNEKESMN 852
Score = 70 (29.7 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 23/106 (21%), Positives = 49/106 (46%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L + L V + L F+ FG + + +V + N +S+ + F++ +A KA MN
Sbjct: 199 LFIKPLPYDVTDDQLRKLFEPFGKIIECKVMLDHNGQSKFAGFVRFSSELDASKAIDAMN 258
Query: 97 GHLIGSK---PVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLV 139
G I P+++ + + + + S+ KQ K ++ + ++
Sbjct: 259 GVRINKDSGYPLVVKYADTEQQKISR------KQRKMQTIYQEKII 298
Score = 38 (18.4 bits), Expect = 2.3e-12, Sum P(2) = 2.3e-12
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 296 VTLSGTKPGVSITNPTKAPKKP 317
+T G+ P SI +PT P
Sbjct: 564 ITSFGSPPNTSIPSPTSDSISP 585
>DICTYBASE|DDB_G0270634 [details] [associations]
symbol:DDB_G0270634 "putative splicing regulator"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0270634 EMBL:AAFI02000005 GO:GO:0045335
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
RefSeq:XP_646268.1 ProteinModelPortal:Q55D63
EnsemblProtists:DDB0233675 GeneID:8617224 KEGG:ddi:DDB_G0270634
InParanoid:Q55D63 OMA:CAFITFS ProtClustDB:CLSZ2497105
Uniprot:Q55D63
Length = 368
Score = 170 (64.9 bits), Expect = 1.7e-18, Sum P(2) = 1.7e-18
Identities = 49/159 (30%), Positives = 87/159 (54%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDE-SRGFAIIVFNTPAEAKKARVEMNG 97
V ++ S++ + + F KFG + D+ + ++K S+G A I F+T EA A N
Sbjct: 22 VGHIPSSMNEEGVSQIFNKFGNILDITIIKDKRTNVSKGCAFITFSTKEEADNALNTTNE 81
Query: 98 HLIGSKPVIITFVEL--KPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
G TF+E KP Q EK +K +F+ ++ T DE++++ F +G
Sbjct: 82 S--G------TFLENMNKPLQVKYSDNEIEKMERK--LFI-GMLGTSDEDQIRILFGNYG 130
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGR 194
I ++ IVR+++GK KG+GFI++ + +E A+ E++G+
Sbjct: 131 IIEDLNIVREKDGKPKGYGFIKYSTRDESENALREIDGK 169
Score = 123 (48.4 bits), Expect = 5.8e-05, P = 5.8e-05
Identities = 28/83 (33%), Positives = 50/83 (60%)
Query: 116 QRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGK-SKGFG 174
Q+ + +++ + + +F+ L T +EELK F +GN+I K+ D+N + SK FG
Sbjct: 272 QQQQQQQQQQQPNESNDLFIYYLPFTYGDEELKQLFAPYGNVISSKVFIDKNTQQSKCFG 331
Query: 175 FIQFFSYKAAEKAIIEMNGRMIQ 197
F+ + + ++A AI E+NGR I+
Sbjct: 332 FVSYDNTQSAIAAIQELNGRAIE 354
Score = 114 (45.2 bits), Expect = 1.7e-18, Sum P(2) = 1.7e-18
Identities = 26/85 (30%), Positives = 41/85 (48%)
Query: 224 QPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKH------IGFIEFIMPKHA 277
QP N +F+ LP + E ++LFA +G + SS + DK+ GF+ + + A
Sbjct: 282 QPNESNDLFIYYLPFTYGDEELKQLFAPYGNVISSKVFIDKNTQQSKCFGFVSYDNTQSA 341
Query: 278 THAVSTMNGHVFKSKPLKVTLSGTK 302
A+ +NG + K LKV K
Sbjct: 342 IAAIQELNGRAIEGKKLKVNFKREK 366
Score = 114 (45.2 bits), Expect = 0.00060, P = 0.00060
Identities = 42/171 (24%), Positives = 80/171 (46%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGK-SKGFGFIQFFSYKAAEKAIIEM 191
VFV ++ +++EE + F KFGNI+++ I++D+ SKG FI F + + A+ A+
Sbjct: 20 VFVGHIPSSMNEEGVSQIFNKFGNILDITIIKDKRTNVSKGCAFITFSTKEEADNALNTT 79
Query: 192 NGRMIQHNSTFVSLAEIXXXXXXXXXXXXXLLQPARKNKIFVANLPSNINNSEFEELFAR 251
N + TF+ E + + RK +F+ L ++ + + LF
Sbjct: 80 N-----ESGTFL---ENMNKPLQVKYSDNEIEKMERK--LFIGMLGTS-DEDQIRILFGN 128
Query: 252 FGTITSSSLVSDKH-----IGFIEFIMPKHATHAVSTMNG-HVFKSKPLKV 296
+G I ++V +K GFI++ + +A+ ++G H L +
Sbjct: 129 YGIIEDLNIVREKDGKPKGYGFIKYSTRDESENALREIDGKHTLPGSNLPI 179
Score = 104 (41.7 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 27/113 (23%), Positives = 59/113 (52%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L + L S ++Q I F +G + D+ + R K+ + +G+ I ++T E++ A E++
Sbjct: 109 LFIGMLGTSDEDQIRIL-FGNYGIIEDLNIVREKDGKPKGYGFIKYSTRDESENALREID 167
Query: 97 G-HLI-GSK-PVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEE 146
G H + GS P+I+ F + + +R K +G ++ + +N + +++
Sbjct: 168 GKHTLPGSNLPIIVKFADTERQKRKKLLGNQQPPQNPFNFYQQNQQQQQQQQQ 220
>GENEDB_PFALCIPARUM|PFL1170w [details] [associations]
symbol:PFL1170w "polyadenylate-binding protein,
putative" species:5833 "Plasmodium falciparum" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006396 EMBL:AE014188 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 RefSeq:XP_001350640.1
ProteinModelPortal:Q8I5H4 SMR:Q8I5H4 IntAct:Q8I5H4
MINT:MINT-1695921 EnsemblProtists:PFL1170w:mRNA GeneID:811286
KEGG:pfa:PFL1170w EuPathDB:PlasmoDB:PF3D7_1224300 OMA:YEDEESA
ProtClustDB:CLSZ2500971 Uniprot:Q8I5H4
Length = 875
Score = 230 (86.0 bits), Expect = 5.3e-18, P = 5.3e-18
Identities = 67/254 (26%), Positives = 117/254 (46%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L V L F G + +RV R+ +S G+A + ++ A+A++A +
Sbjct: 18 LYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALDTL 77
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N I +P + + P R G +FVKNL +++D + L F FG
Sbjct: 78 NYTNIKGQPARLMWSHRDPSLRKSGTG---------NIFVKNLDKSIDNKALFDTFSMFG 128
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXX 215
NI+ K+ DE GKSK +GF+ + ++A++AI ++NG +Q S V +
Sbjct: 129 NILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNG--VQLGSKNVYVGPFIKKSERA 186
Query: 216 XXXXXXLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD---KHIGFIEFI 272
+ ++V N P ++ + +LF +G ITS + D + FI +
Sbjct: 187 T-------NDTKFTNLYVKNFPDSVTETHLRQLFNPYGEITSMIVKMDNKNRKFCFINYA 239
Query: 273 MPKHATHAVSTMNG 286
+ A +A+ +NG
Sbjct: 240 DAESAKNAMDNLNG 253
Score = 183 (69.5 bits), Expect = 7.8e-18, Sum P(2) = 7.8e-18
Identities = 48/161 (29%), Positives = 88/161 (54%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ V NL+ S+DN+AL + F FG + +VA ++ +S+ + + + AK+A ++N
Sbjct: 106 IFVKNLDKSIDNKALFDTFSMFGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVN 165
Query: 97 GHLIGSKPVII-TFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
G +GSK V + F+ K +R+ K ++VKN ++V E L+ F +G
Sbjct: 166 GVQLGSKNVYVGPFI--KKSERAT------NDTKFTNLYVKNFPDSVTETHLRQLFNPYG 217
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMI 196
I + IV+ +N K++ F FI + ++A+ A+ +NG+ I
Sbjct: 218 EITSM-IVKMDN-KNRKFCFINYADAESAKNAMDNLNGKKI 256
Score = 154 (59.3 bits), Expect = 7.0e-08, P = 7.0e-08
Identities = 31/75 (41%), Positives = 48/75 (64%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMN 192
+++KNL + +D+ L+ F FG I K++RDE +SKGFGF+ F S + A KA+ EM+
Sbjct: 452 LYIKNLDDGIDDIMLRELFEPFGTITSAKVMRDEKEQSKGFGFVCFASQEEANKAVTEMH 511
Query: 193 GRMIQHNSTFVSLAE 207
++I +V LAE
Sbjct: 512 LKIINGKPLYVGLAE 526
Score = 134 (52.2 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 28/81 (34%), Positives = 47/81 (58%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L++ NL+ +D+ L F+ FGT+ +V R++ ++S+GF + F + EA KA EM+
Sbjct: 452 LYIKNLDDGIDDIMLRELFEPFGTITSAKVMRDEKEQSKGFGFVCFASQEEANKAVTEMH 511
Query: 97 GHLIGSKPVIITFVELKPGQR 117
+I KP+ + E K QR
Sbjct: 512 LKIINGKPLYVGLAE-KREQR 531
Score = 123 (48.4 bits), Expect = 0.00020, P = 0.00020
Identities = 48/186 (25%), Positives = 80/186 (43%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEM 191
++V +L E V E L F G++ +++ RD KS G+ ++ + + AE+A+ +
Sbjct: 18 LYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALDTL 77
Query: 192 NGRMIQHNSTFVSLAEIXXXXXXXXXXXXXLLQPARKNKIFVANLPSNINNSEFEELFAR 251
N I+ A + L+ + IFV NL +I+N + F+
Sbjct: 78 NYTNIKGQP-----ARLMWSHRDPS------LRKSGTGNIFVKNLDKSIDNKALFDTFSM 126
Query: 252 FGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKPGVS 306
FG I S + +D K GF+ + + A A+ +NG SK + V K
Sbjct: 127 FGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGVQLGSKNVYVG-PFIKKSER 185
Query: 307 ITNPTK 312
TN TK
Sbjct: 186 ATNDTK 191
Score = 105 (42.0 bits), Expect = 7.8e-18, Sum P(2) = 7.8e-18
Identities = 26/74 (35%), Positives = 40/74 (54%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMN 285
+++ NL I++ ELF FGTITS+ ++ D K GF+ F + A AV+ M+
Sbjct: 452 LYIKNLDDGIDDIMLRELFEPFGTITSAKVMRDEKEQSKGFGFVCFASQEEANKAVTEMH 511
Query: 286 GHVFKSKPLKVTLS 299
+ KPL V L+
Sbjct: 512 LKIINGKPLYVGLA 525
>UNIPROTKB|Q8I5H4 [details] [associations]
symbol:PFL1170w "Polyadenylate-binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0005575 "cellular_component"
evidence=ND] [GO:0006396 "RNA processing" evidence=ISS] [GO:0008143
"poly(A) RNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006396 EMBL:AE014188 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 RefSeq:XP_001350640.1
ProteinModelPortal:Q8I5H4 SMR:Q8I5H4 IntAct:Q8I5H4
MINT:MINT-1695921 EnsemblProtists:PFL1170w:mRNA GeneID:811286
KEGG:pfa:PFL1170w EuPathDB:PlasmoDB:PF3D7_1224300 OMA:YEDEESA
ProtClustDB:CLSZ2500971 Uniprot:Q8I5H4
Length = 875
Score = 230 (86.0 bits), Expect = 5.3e-18, P = 5.3e-18
Identities = 67/254 (26%), Positives = 117/254 (46%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L V L F G + +RV R+ +S G+A + ++ A+A++A +
Sbjct: 18 LYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALDTL 77
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N I +P + + P R G +FVKNL +++D + L F FG
Sbjct: 78 NYTNIKGQPARLMWSHRDPSLRKSGTG---------NIFVKNLDKSIDNKALFDTFSMFG 128
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXX 215
NI+ K+ DE GKSK +GF+ + ++A++AI ++NG +Q S V +
Sbjct: 129 NILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNG--VQLGSKNVYVGPFIKKSERA 186
Query: 216 XXXXXXLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD---KHIGFIEFI 272
+ ++V N P ++ + +LF +G ITS + D + FI +
Sbjct: 187 T-------NDTKFTNLYVKNFPDSVTETHLRQLFNPYGEITSMIVKMDNKNRKFCFINYA 239
Query: 273 MPKHATHAVSTMNG 286
+ A +A+ +NG
Sbjct: 240 DAESAKNAMDNLNG 253
Score = 183 (69.5 bits), Expect = 7.8e-18, Sum P(2) = 7.8e-18
Identities = 48/161 (29%), Positives = 88/161 (54%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ V NL+ S+DN+AL + F FG + +VA ++ +S+ + + + AK+A ++N
Sbjct: 106 IFVKNLDKSIDNKALFDTFSMFGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVN 165
Query: 97 GHLIGSKPVII-TFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
G +GSK V + F+ K +R+ K ++VKN ++V E L+ F +G
Sbjct: 166 GVQLGSKNVYVGPFI--KKSERAT------NDTKFTNLYVKNFPDSVTETHLRQLFNPYG 217
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMI 196
I + IV+ +N K++ F FI + ++A+ A+ +NG+ I
Sbjct: 218 EITSM-IVKMDN-KNRKFCFINYADAESAKNAMDNLNGKKI 256
Score = 154 (59.3 bits), Expect = 7.0e-08, P = 7.0e-08
Identities = 31/75 (41%), Positives = 48/75 (64%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMN 192
+++KNL + +D+ L+ F FG I K++RDE +SKGFGF+ F S + A KA+ EM+
Sbjct: 452 LYIKNLDDGIDDIMLRELFEPFGTITSAKVMRDEKEQSKGFGFVCFASQEEANKAVTEMH 511
Query: 193 GRMIQHNSTFVSLAE 207
++I +V LAE
Sbjct: 512 LKIINGKPLYVGLAE 526
Score = 134 (52.2 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 28/81 (34%), Positives = 47/81 (58%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L++ NL+ +D+ L F+ FGT+ +V R++ ++S+GF + F + EA KA EM+
Sbjct: 452 LYIKNLDDGIDDIMLRELFEPFGTITSAKVMRDEKEQSKGFGFVCFASQEEANKAVTEMH 511
Query: 97 GHLIGSKPVIITFVELKPGQR 117
+I KP+ + E K QR
Sbjct: 512 LKIINGKPLYVGLAE-KREQR 531
Score = 123 (48.4 bits), Expect = 0.00020, P = 0.00020
Identities = 48/186 (25%), Positives = 80/186 (43%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEM 191
++V +L E V E L F G++ +++ RD KS G+ ++ + + AE+A+ +
Sbjct: 18 LYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALDTL 77
Query: 192 NGRMIQHNSTFVSLAEIXXXXXXXXXXXXXLLQPARKNKIFVANLPSNINNSEFEELFAR 251
N I+ A + L+ + IFV NL +I+N + F+
Sbjct: 78 NYTNIKGQP-----ARLMWSHRDPS------LRKSGTGNIFVKNLDKSIDNKALFDTFSM 126
Query: 252 FGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKPGVS 306
FG I S + +D K GF+ + + A A+ +NG SK + V K
Sbjct: 127 FGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGVQLGSKNVYVG-PFIKKSER 185
Query: 307 ITNPTK 312
TN TK
Sbjct: 186 ATNDTK 191
Score = 105 (42.0 bits), Expect = 7.8e-18, Sum P(2) = 7.8e-18
Identities = 26/74 (35%), Positives = 40/74 (54%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVSTMN 285
+++ NL I++ ELF FGTITS+ ++ D K GF+ F + A AV+ M+
Sbjct: 452 LYIKNLDDGIDDIMLRELFEPFGTITSAKVMRDEKEQSKGFGFVCFASQEEANKAVTEMH 511
Query: 286 GHVFKSKPLKVTLS 299
+ KPL V L+
Sbjct: 512 LKIINGKPLYVGLA 525
>WB|WBGene00012904 [details] [associations]
symbol:tiar-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HSSP:P11940 EMBL:AL110485 GeneTree:ENSGT00680000099967
HOGENOM:HOG000206748 KO:K13201 RefSeq:NP_496718.1 UniGene:Cel.14057
ProteinModelPortal:Q9U2F5 SMR:Q9U2F5 IntAct:Q9U2F5 PaxDb:Q9U2F5
EnsemblMetazoa:Y46G5A.13 GeneID:174909 KEGG:cel:CELE_Y46G5A.13
UCSC:Y46G5A.13 CTD:174909 WormBase:Y46G5A.13 InParanoid:Q9U2F5
NextBio:886000 Uniprot:Q9U2F5
Length = 434
Score = 203 (76.5 bits), Expect = 7.3e-18, Sum P(2) = 7.3e-18
Identities = 55/162 (33%), Positives = 87/162 (53%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVA-RNKNDESRGFAIIVFNTPAEAKKARVEM 95
L V NL+P++ ++ L F + G + ++ ND +A + F+ +A A
Sbjct: 42 LFVANLDPAITDEFLATLFNQIGAVMKAKIIFEGLNDP---YAFVEFSDHNQATLALQSH 98
Query: 96 NGHLIGSKPVIIT--FVELKPGQ-RSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFI 152
NG + K + +T F +PG+ RSKP E ++ VFV +L +D +L+ F+
Sbjct: 99 NGRELLEKEMHVTWAFEPREPGENRSKP---ETSRHFH--VFVGDLCSEIDSTKLREAFV 153
Query: 153 KFGNIIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAIIEMNG 193
KFG + E KI+RD N K KG+GF+ + + AE+AI EMNG
Sbjct: 154 KFGEVSEAKIIRDNNTNKGKGYGFVSYPRREDAERAIDEMNG 195
Score = 140 (54.3 bits), Expect = 9.3e-07, P = 9.3e-07
Identities = 41/177 (23%), Positives = 81/177 (45%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMN 192
+FV NL + +E L + F + G +++ KI+ + G + + F++F + A A+ N
Sbjct: 42 LFVANLDPAITDEFLATLFNQIGAVMKAKIIFE--GLNDPYAFVEFSDHNQATLALQSHN 99
Query: 193 GRMIQHNSTFVSLAEIXXXXXXXXXXXXXLLQPARKNKIFVANLPSNINNSEFEELFARF 252
GR + V+ A + +R +FV +L S I++++ E F +F
Sbjct: 100 GRELLEKEMHVTWA----FEPREPGENRSKPETSRHFHVFVGDLCSEIDSTKLREAFVKF 155
Query: 253 GTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKP 303
G ++ + ++ D K GF+ + + A A+ MNG + ++ + KP
Sbjct: 156 GEVSEAKIIRDNNTNKGKGYGFVSYPRREDAERAIDEMNGAWLGRRTIRTNWATRKP 212
Score = 95 (38.5 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 20/79 (25%), Positives = 42/79 (53%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKN-DESRGFAIIVFNTPAEAKKARVEMNG 97
V +L +D+ L F KFG + + ++ R+ N ++ +G+ + + +A++A EMNG
Sbjct: 136 VGDLCSEIDSTKLREAFVKFGEVSEAKIIRDNNTNKGKGYGFVSYPRREDAERAIDEMNG 195
Query: 98 HLIGSKPVIITFVELKPGQ 116
+G + + + KP +
Sbjct: 196 AWLGRRTIRTNWATRKPDE 214
Score = 85 (35.0 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 20/60 (33%), Positives = 38/60 (63%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMN 192
V+V N+ + E+E++ F +FG I EV+ K +G+ F++F + ++A +AI++MN
Sbjct: 258 VYVGNIAN-LGEDEIRRAFDRFGPINEVRTF-----KIQGYAFVKFETKESAARAIVQMN 311
Score = 69 (29.3 bits), Expect = 7.3e-18, Sum P(2) = 7.3e-18
Identities = 18/63 (28%), Positives = 28/63 (44%)
Query: 224 QPARKN-KIFVANLPSNINNSEFEELFARFGTITSSSLVSDKHIGFIEFIMPKHATHAVS 282
Q A N ++V N+ +N+ E F RFG I + F++F + A A+
Sbjct: 250 QAAADNTSVYVGNI-ANLGEDEIRRAFDRFGPINEVRTFKIQGYAFVKFETKESAARAIV 308
Query: 283 TMN 285
MN
Sbjct: 309 QMN 311
>ZFIN|ZDB-GENE-040426-960 [details] [associations]
symbol:rbm28 "RNA binding motif protein 28"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-960 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOGENOM:HOG000124666 HOVERGEN:HBG073213 EMBL:BX901876
IPI:IPI00499330 UniGene:Dr.78227 ProteinModelPortal:Q1LV83
SMR:Q1LV83 STRING:Q1LV83 ArrayExpress:Q1LV83 Uniprot:Q1LV83
Length = 865
Score = 214 (80.4 bits), Expect = 5.6e-17, Sum P(3) = 5.6e-17
Identities = 56/186 (30%), Positives = 91/186 (48%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L + NL ++ L F KFGT+ + R+ + + +GFA + F +EA+KAR MN
Sbjct: 126 LIIRNLSFKCEDDELKQIFSKFGTVLETRIPLKPDGKKKGFAFVQFKCVSEAEKARAAMN 185
Query: 97 GHLIGSKPVIITFV-----ELKPGQRSKPVGPEE----KQYK-------KDKVFVKNLVE 140
I +PV + + P +P EE +++K K ++ ++NL
Sbjct: 186 RKAIRDRPVEVDWTTSNTESADPEDTEEPHKAEETTSTEKFKGIRKIKLKSRLIIRNLSF 245
Query: 141 TVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNS 200
+E++LK F +FG ++E KI +GK +GF F+ F A KA+ MNG+ I+
Sbjct: 246 KCEEDDLKQIFSEFGTVLEAKIPLKPDGKKRGFAFVLFKRMPEAGKALTAMNGKKIKDRQ 305
Query: 201 TFVSLA 206
V A
Sbjct: 306 VAVDWA 311
Score = 133 (51.9 bits), Expect = 1.8e-10, Sum P(3) = 1.8e-10
Identities = 37/148 (25%), Positives = 66/148 (44%)
Query: 129 KKDK--VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEK 186
KK+ + ++NL +++ELK F KFG ++E +I +GK KGF F+QF AEK
Sbjct: 120 KKENGWLIIRNLSFKCEDDELKQIFSKFGTVLETRIPLKPDGKKKGFAFVQFKCVSEAEK 179
Query: 187 AIIEMNGRMIQH----------NSTFVSLAEIXXXXXXXXXXXXXLLQPARK----NKIF 232
A MN + I+ N+ + + RK +++
Sbjct: 180 ARAAMNRKAIRDRPVEVDWTTSNTESADPEDTEEPHKAEETTSTEKFKGIRKIKLKSRLI 239
Query: 233 VANLPSNINNSEFEELFARFGTITSSSL 260
+ NL + +++F+ FGT+ + +
Sbjct: 240 IRNLSFKCEEDDLKQIFSEFGTVLEAKI 267
Score = 104 (41.7 bits), Expect = 1.5e-08, Sum P(3) = 1.5e-08
Identities = 30/110 (27%), Positives = 48/110 (43%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L + NL + L F +FGT+ + ++ + + RGFA ++F EA KA MN
Sbjct: 238 LIIRNLSFKCEEDDLKQIFSEFGTVLEAKIPLKPDGKKRGFAFVLFKRMPEAGKALTAMN 297
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEE 146
G I + V + + K + K++ V K VE DE +
Sbjct: 298 GKKIKDRQVAVDWAIAKDKYLATQSASAAGNIKEENVTGK--VEEADENK 345
Score = 102 (41.0 bits), Expect = 1.5e-08, Sum P(3) = 1.5e-08
Identities = 23/57 (40%), Positives = 36/57 (63%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRD-ENGKSKGFGFIQFFSYKAAEKAI 188
+F++NL +EE L+ ++FG + V++V + + G SKG F QF S +AAEK I
Sbjct: 441 IFIRNLSFDSEEEGLEEVLLQFGELSYVRVVMNPDTGVSKGCAFAQFKSKEAAEKCI 497
Score = 94 (38.1 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 22/75 (29%), Positives = 40/75 (53%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMN 192
+FV+ L ET E L F + G + +V D+ K +GFG++ F A++A+ E+
Sbjct: 6 LFVRRLPETASNEHLAEIFSEIGPLKNCFVVCDKEKKCRGFGYVTFSMEDDAQRALKEV- 64
Query: 193 GRMIQHNSTFVSLAE 207
++ FV++A+
Sbjct: 65 -KLYDDQKIFVTVAK 78
Score = 88 (36.0 bits), Expect = 1.8e-10, Sum P(3) = 1.8e-10
Identities = 26/113 (23%), Positives = 50/113 (44%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L V L + N+ L F + G L++ V +K + RGF + F+ +A++A E+
Sbjct: 6 LFVRRLPETASNEHLAEIFSEIGPLKNCFVVCDKEKKCRGFGYVTFSMEDDAQRALKEVK 65
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKS 149
L + + +T + K + + + + D + ET + EE+ S
Sbjct: 66 --LYDDQKIFVTVAKKKLDDKKRKKNAKTNKDSGDTEESQKSGETKNTEEIPS 116
Score = 86 (35.3 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 26/114 (22%), Positives = 50/114 (43%)
Query: 225 PARKNK---IFVANLPSNINNSEFEELFARFGTI--TSSSLVSD---KHIGFIEFIMPKH 276
P +K + + + NL + E +++F++FGT+ T L D K F++F
Sbjct: 117 PTKKKENGWLIIRNLSFKCEDDELKQIFSKFGTVLETRIPLKPDGKKKGFAFVQFKCVSE 176
Query: 277 ATHAVSTMNGHVFKSKPLKVTLSGTKPGVSITNPTKAPKKPAYIDEVKNVIGIK 330
A A + MN + +P++V + + + T+ P K + GI+
Sbjct: 177 AEKARAAMNRKAIRDRPVEVDWTTSNTESADPEDTEEPHKAEETTSTEKFKGIR 230
Score = 73 (30.8 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 31/111 (27%), Positives = 51/111 (45%)
Query: 228 KNKIFVANLPSNINNSEFEELFARFGTITSSS--LVSD-KHIGFIEFIMPKH---ATHAV 281
K+++ + NL + +++F+ FGT+ + L D K GF F++ K A A+
Sbjct: 235 KSRLIIRNLSFKCEEDDLKQIFSEFGTVLEAKIPLKPDGKKRGFA-FVLFKRMPEAGKAL 293
Query: 282 STMNGHVFKSKPLKVTLSGTKPGVSITNPTKAPKKPAYIDEVKNVIGIKVQ 332
+ MNG K + + V + K T A I E +NV G KV+
Sbjct: 294 TAMNGKKIKDRQVAVDWAIAKDKYLATQSASAAGN---IKE-ENVTG-KVE 339
Score = 44 (20.5 bits), Expect = 5.6e-17, Sum P(3) = 5.6e-17
Identities = 10/37 (27%), Positives = 18/37 (48%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSDKHIG 267
IF+ NL + EE+ +FG ++ +V + G
Sbjct: 441 IFIRNLSFDSEEEGLEEVLLQFGELSYVRVVMNPDTG 477
Score = 42 (19.8 bits), Expect = 5.6e-17, Sum P(3) = 5.6e-17
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 267 GFIEFIMPKHATHAVSTMNGH 287
GF+EF +HA A+ +N +
Sbjct: 646 GFVEFQEHEHAIQALRHLNNN 666
>DICTYBASE|DDB_G0292472 [details] [associations]
symbol:DDB_G0292472 species:44689 "Dictyostelium
discoideum" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0292472 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000190 eggNOG:NOG321849 RefSeq:XP_629639.1
ProteinModelPortal:Q54D57 EnsemblProtists:DDB0184418 GeneID:8628703
KEGG:ddi:DDB_G0292472 InParanoid:Q54D57 OMA:ANINFAF Uniprot:Q54D57
Length = 550
Score = 150 (57.9 bits), Expect = 5.7e-17, Sum P(3) = 5.7e-17
Identities = 47/184 (25%), Positives = 77/184 (41%)
Query: 69 NKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQY 128
+ N+ S G+ + F+ EA A ++NG + SKP+ +++ + Q +
Sbjct: 146 SNNNSSLGYGFVKFSKKDEAAMAIEQLNGFEVDSKPLKVSYAQASSSQSTHA-------- 197
Query: 129 KKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRD-ENGKSKGFGFIQFFSYKAAEKA 187
+++ L V LK F FG++I+ KI+ D + G S+ GF+ F + A KA
Sbjct: 198 ---NLYINRLEPHVTNANLKEVFGSFGDVIDTKILTDPDTGASRCVGFVHFSQRREALKA 254
Query: 188 IIEMNGRMIQHNST--FVSLAEIXXXXXXXXXXXXXLLQPARKNKIFVANLPSNINNSEF 245
+ MNG I ST +V A + + N +N N NN F
Sbjct: 255 VSSMNGANIPFQSTPIYVKFANQLSGNNNGNNNNNIINSNSNNNNNNNSNSNFNNNNGNF 314
Query: 246 EELF 249
F
Sbjct: 315 NNPF 318
Score = 128 (50.1 bits), Expect = 9.2e-09, Sum P(2) = 9.2e-09
Identities = 42/155 (27%), Positives = 72/155 (46%)
Query: 167 NGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXXXXXXXXLLQPA 226
N S G+GF++F A AI ++NG + VS A+ Q
Sbjct: 148 NNSSLGYGFVKFSKKDEAAMAIEQLNGFEVDSKPLKVSYAQASSS------------QST 195
Query: 227 RKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHA 280
N +++ L ++ N+ +E+F FG + + +++D + +GF+ F + A A
Sbjct: 196 HAN-LYINRLEPHVTNANLKEVFGSFGDVIDTKILTDPDTGASRCVGFVHFSQRREALKA 254
Query: 281 VSTMNG-HV-FKSKPLKVT----LSGTKPGVSITN 309
VS+MNG ++ F+S P+ V LSG G + N
Sbjct: 255 VSSMNGANIPFQSTPIYVKFANQLSGNNNGNNNNN 289
Score = 97 (39.2 bits), Expect = 5.7e-17, Sum P(3) = 5.7e-17
Identities = 23/74 (31%), Positives = 44/74 (59%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSDKHIGFIEFIMPKHATHAVSTMNGHVFK 290
I ++NLP+NI+ + +LFA FG I+ L+++ I ++ + +A++T+NG +
Sbjct: 454 IHISNLPNNIDETFLYKLFA-FGAISGVQLLNNGQ-AIITYLDYQTVQNAINTLNGKIIS 511
Query: 291 SKPLKVT-LSGTKP 303
+ LKV L+ + P
Sbjct: 512 GRSLKVVCLTNSSP 525
Score = 91 (37.1 bits), Expect = 6.7e-07, Sum P(2) = 6.7e-07
Identities = 27/85 (31%), Positives = 39/85 (45%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKND-ESRGFAIIVFNTPAEAKKARVEM 95
L++N LEP V N L F FG + D ++ + + SR + F+ EA KA M
Sbjct: 199 LYINRLEPHVTNANLKEVFGSFGDVIDTKILTDPDTGASRCVGFVHFSQRREALKAVSSM 258
Query: 96 NGHLIG--SKPVIITFVELKPGQRS 118
NG I S P+ + F G +
Sbjct: 259 NGANIPFQSTPIYVKFANQLSGNNN 283
Score = 75 (31.5 bits), Expect = 9.2e-09, Sum P(2) = 9.2e-09
Identities = 19/42 (45%), Positives = 25/42 (59%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIV----RDENGKS 170
+ V N+ +++D ELKS F KFG I KIV +D NG S
Sbjct: 84 LIVNNIPKSMDSNELKSLFDKFGEIESCKIVFNRKKDGNGNS 125
Score = 69 (29.3 bits), Expect = 5.7e-17, Sum P(3) = 5.7e-17
Identities = 15/48 (31%), Positives = 26/48 (54%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNT 84
L VNN+ S+D+ L + F KFG + ++ N+ + G + I N+
Sbjct: 84 LIVNNIPKSMDSNELKSLFDKFGEIESCKIVFNRKKDGNGNSNININS 131
Score = 67 (28.6 bits), Expect = 0.00087, Sum P(2) = 0.00087
Identities = 20/68 (29%), Positives = 34/68 (50%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMN 192
+ + NL +DE L F FG I V+++ NG++ I + Y+ + AI +N
Sbjct: 454 IHISNLPNNIDETFLYKLFA-FGAISGVQLLN--NGQA----IITYLDYQTVQNAINTLN 506
Query: 193 GRMIQHNS 200
G++I S
Sbjct: 507 GKIISGRS 514
>WB|WBGene00015943 [details] [associations]
symbol:tiar-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0009792
GO:GO:0002009 GO:GO:0040007 GO:GO:0002119 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0040011 GO:GO:0000003
GO:GO:0003676 EMBL:FO080599 HSSP:P11940
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
GeneID:173967 KEGG:cel:CELE_C18A3.5 UCSC:C18A3.5f.1 CTD:173967
NextBio:881893 RefSeq:NP_495121.1 ProteinModelPortal:Q95QV8
SMR:Q95QV8 IntAct:Q95QV8 STRING:Q95QV8 PRIDE:Q95QV8
EnsemblMetazoa:C18A3.5a WormBase:C18A3.5a InParanoid:Q95QV8
OMA:WAVEPGQ ArrayExpress:Q95QV8 Uniprot:Q95QV8
Length = 408
Score = 221 (82.9 bits), Expect = 7.3e-17, P = 7.3e-17
Identities = 55/166 (33%), Positives = 90/166 (54%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKND-ESRGFAIIVFNTPAEAKKARVEMNG 97
V +L VDNQ L F+ FG + D +V R+ N +S+G+ + + EA++A +MNG
Sbjct: 139 VGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNG 198
Query: 98 HLIGSKPVIITFVELKPGQRSKPVGPEEKQYKK-------DK--VFVKNLVETVDEEELK 148
+G + + + KPG + KP EK Y + D V+V N+ ++ E+E++
Sbjct: 199 QWLGRRTIRTNWATRKPGDQEKPSHYNEKSYDEIYNQTSGDNTSVYVGNIA-SLTEDEIR 257
Query: 149 SHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGR 194
F FG I EV+I K +G+ F++F + AA KAI++MN +
Sbjct: 258 QGFASFGRITEVRIF-----KMQGYAFVKFDNKDAAAKAIVQMNNQ 298
Score = 215 (80.7 bits), Expect = 6.8e-16, P = 6.8e-16
Identities = 64/257 (24%), Positives = 122/257 (47%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L+V NL+ +V + F + G++ +V + +++ +A + F+ +A +A MN
Sbjct: 48 LYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDGSNDP--YAFVEFSDHGQASQALQTMN 105
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
L+ + + + + ++PGQ+ + + VFV +L VD ++L+ F FG+
Sbjct: 106 KRLLLDREMKVNWA-VEPGQQQSKIDTTRHFH----VFVGDLSSEVDNQKLREAFQPFGD 160
Query: 157 IIEVKIVRDENG-KSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLA------EIX 209
+ + K++RD N KSKG+GF+ + + AE+AI +MNG+ + + + A +
Sbjct: 161 VSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATRKPGDQEK 220
Query: 210 XXXXXXXXXXXXLLQPARKN-KIFVANLPSNINNSEFEELFARFGTITSSSLVSDKHIGF 268
Q + N ++V N+ S + E + FA FG IT + + F
Sbjct: 221 PSHYNEKSYDEIYNQTSGDNTSVYVGNIAS-LTEDEIRQGFASFGRITEVRIFKMQGYAF 279
Query: 269 IEFIMPKHATHAVSTMN 285
++F A A+ MN
Sbjct: 280 VKFDNKDAAAKAIVQMN 296
Score = 160 (61.4 bits), Expect = 4.3e-09, P = 4.3e-09
Identities = 48/199 (24%), Positives = 92/199 (46%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMN 192
++V NL TV E+ + + F + G++ + K++ D G + + F++F + A +A+ MN
Sbjct: 48 LYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD--GSNDPYAFVEFSDHGQASQALQTMN 105
Query: 193 GRMIQHNSTFVSLAEIXXXXXXXXXXXXXLLQPARKNKIFVANLPSNINNSEFEELFARF 252
R++ V+ A + R +FV +L S ++N + E F F
Sbjct: 106 KRLLLDREMKVNWA-------VEPGQQQSKIDTTRHFHVFVGDLSSEVDNQKLREAFQPF 158
Query: 253 GTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKPGVS 306
G ++ + ++ D K GF+ + + A A+ MNG + ++ + KPG
Sbjct: 159 GDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATRKPGDQ 218
Query: 307 ITNPTKAPKKPAYIDEVKN 325
P+ +K +Y DE+ N
Sbjct: 219 -EKPSHYNEK-SY-DEIYN 234
>UNIPROTKB|D4A6U8 [details] [associations]
symbol:Tia1 "Protein Tia1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305742 GO:GO:0005634 GO:GO:0005737 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036 GO:GO:0048024
OrthoDB:EOG4B5P59 IPI:IPI00778030 ProteinModelPortal:D4A6U8
Ensembl:ENSRNOT00000041366 Uniprot:D4A6U8
Length = 382
Score = 220 (82.5 bits), Expect = 8.0e-17, P = 8.0e-17
Identities = 83/304 (27%), Positives = 128/304 (42%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK--NDESRGFAIIVFNTPAEAKKARVE 94
L+V NL V ++ F + G ++ ++ + ND + + F+ A A
Sbjct: 5 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP---YCFVEFHEHRHAAAALAA 61
Query: 95 MNGHLIGSKPVIITFVELKPGQR----SKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
MNG I K V + + Q+ S V ++ VFV +L + E++K+
Sbjct: 62 MNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAA 121
Query: 151 FIKFGNIIEVKIVRD-ENGKSKGFGFIQFFSYKAAEKAIIEMNG-----RMIQHN-STFV 203
F FG I + ++V+D GKSKG+GF+ FF+ AE AI +M G R I+ N +T
Sbjct: 122 FAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 181
Query: 204 SLA--EIXXXXXXXXXXXXXLLQPARKN-KIFVANLPSNINNSEFEELFARFGTITSSSL 260
A + Q + N ++ + S + + F+ FG I +
Sbjct: 182 PPAPKSTYESNTKQLSYDEVVSQSSPGNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRV 241
Query: 261 VSDKHIGFIEFIMPKHATHAV-----STMNGHVFKSKPLKVTLSGTKPGVSITNPTKAPK 315
DK FI F + A HA+ +T+ GHV K K TL P V N P
Sbjct: 242 FPDKGYSFIRFSSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDMINP-VQQQNQIGYP- 299
Query: 316 KPAY 319
PAY
Sbjct: 300 -PAY 302
>MGI|MGI:2387367 [details] [associations]
symbol:Rbm45 "RNA binding motif protein 45" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0007399 "nervous system
development" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0030154 "cell differentiation" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:2387367 GO:GO:0005634 GO:GO:0005737
GO:GO:0007399 GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 CTD:129831 eggNOG:NOG145324 HOGENOM:HOG000231828
HOVERGEN:HBG051404 OMA:DIWVVKD EMBL:AB036992 EMBL:AY152391
EMBL:AK089975 EMBL:BC057890 IPI:IPI00221908 RefSeq:NP_700454.1
UniGene:Mm.33310 ProteinModelPortal:Q8BHN5 SMR:Q8BHN5 STRING:Q8BHN5
PhosphoSite:Q8BHN5 PaxDb:Q8BHN5 PRIDE:Q8BHN5
Ensembl:ENSMUST00000046389 GeneID:241490 KEGG:mmu:241490
GeneTree:ENSGT00680000100059 InParanoid:Q8BHN5 OrthoDB:EOG43R3MJ
NextBio:385019 Bgee:Q8BHN5 CleanEx:MM_RBM45 Genevestigator:Q8BHN5
GermOnline:ENSMUSG00000042369 Uniprot:Q8BHN5
Length = 476
Score = 157 (60.3 bits), Expect = 1.3e-16, Sum P(2) = 1.3e-16
Identities = 41/143 (28%), Positives = 78/143 (54%)
Query: 51 LINEFKKFGTLRDVRVARNKND-ESRGFAIIVFNTPAEAKKARVEMNGHLIG---SKPVI 106
L F FG ++D+ V R+K+ ES+G A + F ++A +A EM+G +G +KP+
Sbjct: 41 LRERFSPFGDIQDIWVVRDKHTKESKGVAFVKFARSSQACRAMEEMHGQCLGPSDTKPIK 100
Query: 107 ITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE 166
+ + + + V EE ++FV + ++ EE+L+ F +G+I I++++
Sbjct: 101 VFIAQSRSSGSHRDVEDEELT----RIFVM-IPKSYTEEDLREKFKVYGDIEYCSIIKNK 155
Query: 167 -NGKSKGFGFIQFFSYKAAEKAI 188
G+SKG G++++ A +AI
Sbjct: 156 VTGESKGLGYVRYLKPSQAAQAI 178
Score = 120 (47.3 bits), Expect = 0.00019, P = 0.00019
Identities = 35/142 (24%), Positives = 66/142 (46%)
Query: 147 LKSHFIKFGNIIEVKIVRDENGK-SKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL 205
L+ F FG+I ++ +VRD++ K SKG F++F A +A+ EM+G+ + + T
Sbjct: 41 LRERFSPFGDIQDIWVVRDKHTKESKGVAFVKFARSSQACRAMEEMHGQCLGPSDTKPIK 100
Query: 206 AEIXXXXXXXXXXXXXLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDK- 264
I ++ +IFV +P + + E F +G I S++ +K
Sbjct: 101 VFIAQSRSSGSHRD---VEDEELTRIFVM-IPKSYTEEDLREKFKVYGDIEYCSIIKNKV 156
Query: 265 -----HIGFIEFIMPKHATHAV 281
+G++ ++ P A A+
Sbjct: 157 TGESKGLGYVRYLKPSQAAQAI 178
Score = 116 (45.9 bits), Expect = 1.3e-16, Sum P(2) = 1.3e-16
Identities = 23/72 (31%), Positives = 41/72 (56%)
Query: 228 KNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKHIGFIEFIMPKHATHAVSTMNGH 287
K ++FV P + E++F RFG + LVS K++G++++ K A A++T++G
Sbjct: 391 KERLFVVFNPHPLPLDVLEDIFCRFGNLIEVYLVSGKNVGYVKYADRKSANEAITTLHGK 450
Query: 288 VFKSKPLKVTLS 299
+ LKV L+
Sbjct: 451 ILNGVRLKVMLA 462
Score = 43 (20.2 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 14/50 (28%), Positives = 26/50 (52%)
Query: 144 EEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNG 193
EE+L S F + ++ RD + G G +Q+F+ +A A +++G
Sbjct: 260 EEQLFSIFDIVPGLEYCEVPRDPYS-NYGHGVVQYFNVASAIYAKYKLHG 308
>ASPGD|ASPL0000061196 [details] [associations]
symbol:AN10164 species:162425 "Emericella nidulans"
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:BN001308 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:C8VTL0 EnsemblFungi:CADANIAT00001543 OMA:QNTNPIP
Uniprot:C8VTL0
Length = 477
Score = 174 (66.3 bits), Expect = 1.3e-16, Sum P(2) = 1.3e-16
Identities = 45/163 (27%), Positives = 81/163 (49%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRG--FAIIVFNTPAEAKKARVE 94
L+V L+P V L F+ G + V++ +KN S+G + + F+ P A++A
Sbjct: 92 LYVGGLDPRVTEDILKQIFETTGHVISVKIIPDKNFNSKGANYGFVEFDDPGAAERAMQT 151
Query: 95 MNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKF 154
+NG I + + + +S E+ +FV +L V++E L F F
Sbjct: 152 LNGRRIHQSEIRVNWA-----YQSNTANKEDTS-NHFHIFVGDLSNEVNDEVLLQAFSAF 205
Query: 155 GNIIEVKIVRD-ENGKSKGFGFIQFFSYKAAEKAIIEMNGRMI 196
G++ E +++ D + G+S+G+GF+ F AEKA+ M+G +
Sbjct: 206 GSVSEARVMWDMKTGRSRGYGFVAFRERADAEKALTSMDGEWL 248
Score = 159 (61.0 bits), Expect = 7.5e-09, P = 7.5e-09
Identities = 51/187 (27%), Positives = 89/187 (47%)
Query: 130 KDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKG--FGFIQFFSYKAAEKA 187
K ++V L V E+ LK F G++I VKI+ D+N SKG +GF++F AAE+A
Sbjct: 89 KRALYVGGLDPRVTEDILKQIFETTGHVISVKIIPDKNFNSKGANYGFVEFDDPGAAERA 148
Query: 188 IIEMNGRMIQHNSTFVSLAEIXXXXXXXXXXXXXLLQPARKNKIFVANLPSNINNSEFEE 247
+ +NGR I + V+ A IFV +L + +N+ +
Sbjct: 149 MQTLNGRRIHQSEIRVNWAYQSNTANKEDTSNHF--------HIFVGDLSNEVNDEVLLQ 200
Query: 248 LFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGT 301
F+ FG+++ + ++ D + GF+ F A A+++M+G S+ ++ +
Sbjct: 201 AFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERADAEKALTSMDGEWLGSRAIRCNWANQ 260
Query: 302 K--PGVS 306
K P +S
Sbjct: 261 KGQPSIS 267
Score = 114 (45.2 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 26/83 (31%), Positives = 45/83 (54%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKKARVEM 95
+ V +L V+++ L+ F FG++ + RV + K SRG+ + F A+A+KA M
Sbjct: 184 IFVGDLSNEVNDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERADAEKALTSM 243
Query: 96 NGHLIGSKPVIITFVELKPGQRS 118
+G +GS+ + + K GQ S
Sbjct: 244 DGEWLGSRAIRCNWANQK-GQPS 265
Score = 96 (38.9 bits), Expect = 1.3e-16, Sum P(2) = 1.3e-16
Identities = 20/79 (25%), Positives = 38/79 (48%)
Query: 225 PARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKHIGFIEFIMPKHATHAVSTM 284
PA + +V NL ++ LF FG + + + +D+ FI+ ++A A+ +
Sbjct: 304 PAWQTTCYVGNLTPYTTQNDIVPLFQNFGYVIETRMQADRGFAFIKMDTHENAASAICQL 363
Query: 285 NGHVFKSKPLKVTLSGTKP 303
NG+ +PLK + +P
Sbjct: 364 NGYNVNGRPLKCSWGKDRP 382
Score = 75 (31.5 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 18/60 (30%), Positives = 32/60 (53%)
Query: 134 FVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNG 193
+V NL + ++ F FG +IE ++ D +GF FI+ +++ A AI ++NG
Sbjct: 311 YVGNLTPYTTQNDIVPLFQNFGYVIETRMQAD-----RGFAFIKMDTHENAASAICQLNG 365
>MGI|MGI:107914 [details] [associations]
symbol:Tia1 "cytotoxic granule-associated RNA binding protein
1" species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IDA] [GO:0017091 "AU-rich element binding"
evidence=IDA] [GO:0017148 "negative regulation of translation"
evidence=IMP] [GO:0042036 "negative regulation of cytokine
biosynthetic process" evidence=IMP] [GO:0048024 "regulation of mRNA
splicing, via spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:107914 GO:GO:0005634 GO:GO:0006915 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
GO:GO:0048024 GO:GO:0010494 eggNOG:COG0724 HOGENOM:HOG000206748
KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:U00689
EMBL:U55862 IPI:IPI00132462 PIR:S72435 RefSeq:NP_035715.1
UniGene:Mm.333219 PDB:2DGO PDB:2RNE PDBsum:2DGO PDBsum:2RNE
ProteinModelPortal:P52912 SMR:P52912 STRING:P52912
PhosphoSite:P52912 PaxDb:P52912 PRIDE:P52912
Ensembl:ENSMUST00000095753 GeneID:21841 KEGG:mmu:21841
InParanoid:P52912 OMA:TSAPWMG EvolutionaryTrace:P52912
NextBio:301304 Bgee:P52912 Genevestigator:P52912
GermOnline:ENSMUSG00000071337 Uniprot:P52912
Length = 386
Score = 218 (81.8 bits), Expect = 1.9e-16, P = 1.9e-16
Identities = 73/299 (24%), Positives = 127/299 (42%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK--NDESRGFAIIVFNTPAEAKKARVE 94
L+V NL V ++ F + G ++ ++ + ND + + F+ A A
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP---YCFVEFHEHRHAAAALAA 65
Query: 95 MNGHLIGSKPVIITFVELKPGQR----SKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
MNG I K V + + Q+ S V ++ VFV +L + E++K+
Sbjct: 66 MNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAA 125
Query: 151 FIKFGNIIEVKIVRD-ENGKSKGFGFIQFFSYKAAEKAIIEMNG-----RMIQHN-STFV 203
F FG I + ++V+D GKSKG+GF+ FF+ AE AI +M G R I+ N +T
Sbjct: 126 FAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 185
Query: 204 SLA-EIXXXXXXXXXXXXXLLQPARKNK--IFVANLPSNINNSEFEELFARFGTITSSSL 260
A + ++ + N ++ + S + + F+ FG I +
Sbjct: 186 PPAPKSTYESNTKQLSYDEVVSQSSPNNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRV 245
Query: 261 VSDKHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKPGVSITNPTKAPKKPAY 319
DK F+ F + A HA+ ++NG + +K K + + NP + + Y
Sbjct: 246 FPDKGYSFVRFSSHESAAHAIVSVNGTTIEGHVVKCYWG--KETLDMINPVQQQNQIGY 302
>DICTYBASE|DDB_G0290745 [details] [associations]
symbol:pabpc1B "putative polyadenylate binding
protein (PABP)" species:44689 "Dictyostelium discoideum"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0006378 "mRNA polyadenylation" evidence=ISS] [GO:0005737
"cytoplasm" evidence=IEA;ISS] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 dictyBase:DDB_G0290745 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378
GenomeReviews:CM000154_GR eggNOG:COG0724 EMBL:AAFI02000169
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
RefSeq:XP_001134510.1 ProteinModelPortal:Q1ZXC2 SMR:Q1ZXC2
EnsemblProtists:DDB0233386 GeneID:8627795 KEGG:ddi:DDB_G0290745
OMA:NAIASIH Uniprot:Q1ZXC2
Length = 814
Score = 222 (83.2 bits), Expect = 2.4e-16, P = 2.4e-16
Identities = 90/307 (29%), Positives = 138/307 (44%)
Query: 37 LHVNNLEPSVDNQALINE-FKKFG--TLRDVRVARNKND-ESRGFAIIVFNTPAEAKKAR 92
L+V +L V N+ ++NE F K G + + V R+ N S G+A + F +A++A
Sbjct: 186 LYVGDLAADV-NEIILNELFSKVGRNAIASIHVCRDSNTLRSLGYAYVNFFNNHDAERAL 244
Query: 93 VEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFI 152
+N L+ KP I + P +R VG +FVKNL + VD L F
Sbjct: 245 DTLNYTLVHGKPCRIMWSYRDPTKRKTNVG---------NIFVKNLEKGVDNAMLYDTFS 295
Query: 153 KFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXX 212
FGNI+ K V E G SKG+G++ F + +AEKAI ++NG +I +++
Sbjct: 296 SFGNILSCK-VEFEKGISKGYGYVHFETNDSAEKAIEKVNGTLILGKP--INVERFVSKV 352
Query: 213 XXXXXXXXXLLQPARKNKIFVANLPSNINNSEFE-ELFARFGTITSSSLVSD-----KHI 266
+NK+F N +I + EL RFG I S L +D K +
Sbjct: 353 ERYKV----------ENKVFFRNADESITIEILQQELSNRFGEIESCILKNDANGKSKGL 402
Query: 267 GFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKPGVSITNPTKAPKKPAYIDEVKNV 326
G +EF + A + T +G + S T+ GT S + KP ID +K+
Sbjct: 403 GLVEFKNQEDA-QKILTESGALIIS-----TIDGTTTVSSNGGTIEINGKPITIDRIKSK 456
Query: 327 IGIKVQY 333
+ +Y
Sbjct: 457 VERFTEY 463
Score = 191 (72.3 bits), Expect = 3.5e-12, P = 3.5e-12
Identities = 53/169 (31%), Positives = 87/169 (51%)
Query: 41 NLEPSVDNQALINEFK-KFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHL 99
N + S+ + L E +FG + + + N +S+G ++ F +A+K E +G L
Sbjct: 365 NADESITIEILQQELSNRFGEIESCILKNDANGKSKGLGLVEFKNQEDAQKILTE-SGAL 423
Query: 100 IGSKPVIITFVELKPGQ---RSKPVGPE------EK--QYKKD----KVFVKNLVETVDE 144
I S T V G KP+ + E+ +Y+K +F+ N+ E++D
Sbjct: 424 IISTIDGTTTVSSNGGTIEINGKPITIDRIKSKVERFTEYRKKTTDLSLFINNIDESIDR 483
Query: 145 EELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNG 193
+ +K F K G II +KIV+DEN ++KGFGFI F + A+KA+ +NG
Sbjct: 484 DLIKEEFAKHGTIIGIKIVQDENARNKGFGFISFSEIQEAQKALDSLNG 532
Score = 140 (54.3 bits), Expect = 2.4e-06, P = 2.4e-06
Identities = 46/184 (25%), Positives = 80/184 (43%)
Query: 120 PVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN--IIEVKIVRDENG-KSKGFGFI 176
P+G + ++ ++V +L V+E L F K G I + + RD N +S G+ ++
Sbjct: 173 PIGAYQPPHQLTSLYVGDLAADVNEIILNELFSKVGRNAIASIHVCRDSNTLRSLGYAYV 232
Query: 177 QFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXXXXXXXXLLQPARKNKIFVANL 236
FF+ AE+A+ +N ++ H I + IFV NL
Sbjct: 233 NFFNNHDAERALDTLNYTLV-HGKP----CRIMWSYRDPTKRKTNV------GNIFVKNL 281
Query: 237 PSNINNSEFEELFARFGTITSSSLVSDKHI----GFIEFIMPKHATHAVSTMNGHVFKSK 292
++N+ + F+ FG I S + +K I G++ F A A+ +NG + K
Sbjct: 282 EKGVDNAMLYDTFSSFGNILSCKVEFEKGISKGYGYVHFETNDSAEKAIEKVNGTLILGK 341
Query: 293 PLKV 296
P+ V
Sbjct: 342 PINV 345
Score = 139 (54.0 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 25/73 (34%), Positives = 45/73 (61%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L +NN++ S+D + EF K GT+ +++ +++N ++GF I F+ EA+KA +N
Sbjct: 472 LFINNIDESIDRDLIKEEFAKHGTIIGIKIVQDENARNKGFGFISFSEIQEAQKALDSLN 531
Query: 97 GHLIGSKPVIITF 109
G GSK + ++F
Sbjct: 532 GFTFGSKQIQVSF 544
>RGD|628862 [details] [associations]
symbol:Rbm45 "RNA binding motif protein 45" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISO;ISS] [GO:0005634
"nucleus" evidence=IEA;ISO;ISS] [GO:0005737 "cytoplasm"
evidence=IEA;ISO;ISS] [GO:0007399 "nervous system development"
evidence=IEP] [GO:0030154 "cell differentiation" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:628862 GO:GO:0005634 GO:GO:0005737 GO:GO:0007399
GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
CTD:129831 eggNOG:NOG145324 HOGENOM:HOG000231828 HOVERGEN:HBG051404
OrthoDB:EOG43R3MJ EMBL:AB036990 IPI:IPI00190978 RefSeq:NP_695218.1
UniGene:Rn.204106 ProteinModelPortal:Q8CFD1 STRING:Q8CFD1
PhosphoSite:Q8CFD1 PRIDE:Q8CFD1 GeneID:266631 KEGG:rno:266631
UCSC:RGD:628862 InParanoid:Q8CFD1 NextBio:624456
Genevestigator:Q8CFD1 GermOnline:ENSRNOG00000010595 Uniprot:Q8CFD1
Length = 476
Score = 159 (61.0 bits), Expect = 2.5e-16, Sum P(2) = 2.5e-16
Identities = 40/147 (27%), Positives = 83/147 (56%)
Query: 48 NQALINE-FKKFGTLRDVRVARNKND-ESRGFAIIVFNTPAEAKKARVEMNGHLIG---S 102
+++++ E F FG ++D+ V R+K+ ES+G A + F ++A +A EM+G +G +
Sbjct: 37 SESVLREHFSPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQACRAMEEMHGQCLGPNDT 96
Query: 103 KPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKI 162
KP+ + + + + V EE ++FV + ++ EE+L+ F +G+I +
Sbjct: 97 KPIKVFIAQSRSSGSHRDVEDEELT----RIFVM-IPKSYTEEDLREKFKVYGDIEYCSV 151
Query: 163 VRDE-NGKSKGFGFIQFFSYKAAEKAI 188
++++ G+SKG G++++ A +AI
Sbjct: 152 IKNKVTGESKGLGYVRYLKPSQAAQAI 178
Score = 136 (52.9 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 38/145 (26%), Positives = 68/145 (46%)
Query: 144 EEELKSHFIKFGNIIEVKIVRDENGK-SKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTF 202
E L+ HF FG+I ++ +VRD++ K SKG F++F A +A+ EM+G+ + N T
Sbjct: 38 ESVLREHFSPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQACRAMEEMHGQCLGPNDTK 97
Query: 203 VSLAEIXXXXXXXXXXXXXLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
I ++ +IFV +P + + E F +G I S++
Sbjct: 98 PIKVFIAQSRSSGSHRD---VEDEELTRIFVM-IPKSYTEEDLREKFKVYGDIEYCSVIK 153
Query: 263 DK------HIGFIEFIMPKHATHAV 281
+K +G++ ++ P A A+
Sbjct: 154 NKVTGESKGLGYVRYLKPSQAAQAI 178
Score = 111 (44.1 bits), Expect = 2.5e-16, Sum P(2) = 2.5e-16
Identities = 23/79 (29%), Positives = 43/79 (54%)
Query: 228 KNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKHIGFIEFIMPKHATHAVSTMNGH 287
K ++F+ P + E++F RFG + LVS K++G++++ A A++T++G
Sbjct: 391 KERLFIVFNPHPLPLDVLEDIFCRFGNLIEVYLVSGKNVGYVKYADRMSANDAITTLHGK 450
Query: 288 VFKSKPLKVTLSGTKPGVS 306
+ LKV L+ + VS
Sbjct: 451 ILNGVRLKVMLADSPREVS 469
Score = 57 (25.1 bits), Expect = 9.9e-06, Sum P(3) = 9.9e-06
Identities = 14/48 (29%), Positives = 25/48 (52%)
Query: 45 SVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKA 91
S + L +FK +G + V +NK ES+G + + P++A +A
Sbjct: 130 SYTEEDLREKFKVYGDIEYCSVIKNKVTGESKGLGYVRYLKPSQAAQA 177
Score = 41 (19.5 bits), Expect = 9.9e-06, Sum P(3) = 9.9e-06
Identities = 14/50 (28%), Positives = 26/50 (52%)
Query: 144 EEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNG 193
EE+L S F + ++ RD + G G +Q+F+ +A A +++G
Sbjct: 260 EEQLFSIFDIVPGLEYCEVHRDPY-LNYGHGVVQYFNVASAVYAQYKLHG 308
>UNIPROTKB|Q8CFD1 [details] [associations]
symbol:Rbm45 "RNA-binding protein 45" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:628862 GO:GO:0005634 GO:GO:0005737 GO:GO:0007399
GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
CTD:129831 eggNOG:NOG145324 HOGENOM:HOG000231828 HOVERGEN:HBG051404
OrthoDB:EOG43R3MJ EMBL:AB036990 IPI:IPI00190978 RefSeq:NP_695218.1
UniGene:Rn.204106 ProteinModelPortal:Q8CFD1 STRING:Q8CFD1
PhosphoSite:Q8CFD1 PRIDE:Q8CFD1 GeneID:266631 KEGG:rno:266631
UCSC:RGD:628862 InParanoid:Q8CFD1 NextBio:624456
Genevestigator:Q8CFD1 GermOnline:ENSRNOG00000010595 Uniprot:Q8CFD1
Length = 476
Score = 159 (61.0 bits), Expect = 2.5e-16, Sum P(2) = 2.5e-16
Identities = 40/147 (27%), Positives = 83/147 (56%)
Query: 48 NQALINE-FKKFGTLRDVRVARNKND-ESRGFAIIVFNTPAEAKKARVEMNGHLIG---S 102
+++++ E F FG ++D+ V R+K+ ES+G A + F ++A +A EM+G +G +
Sbjct: 37 SESVLREHFSPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQACRAMEEMHGQCLGPNDT 96
Query: 103 KPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKI 162
KP+ + + + + V EE ++FV + ++ EE+L+ F +G+I +
Sbjct: 97 KPIKVFIAQSRSSGSHRDVEDEELT----RIFVM-IPKSYTEEDLREKFKVYGDIEYCSV 151
Query: 163 VRDE-NGKSKGFGFIQFFSYKAAEKAI 188
++++ G+SKG G++++ A +AI
Sbjct: 152 IKNKVTGESKGLGYVRYLKPSQAAQAI 178
Score = 136 (52.9 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 38/145 (26%), Positives = 68/145 (46%)
Query: 144 EEELKSHFIKFGNIIEVKIVRDENGK-SKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTF 202
E L+ HF FG+I ++ +VRD++ K SKG F++F A +A+ EM+G+ + N T
Sbjct: 38 ESVLREHFSPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQACRAMEEMHGQCLGPNDTK 97
Query: 203 VSLAEIXXXXXXXXXXXXXLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
I ++ +IFV +P + + E F +G I S++
Sbjct: 98 PIKVFIAQSRSSGSHRD---VEDEELTRIFVM-IPKSYTEEDLREKFKVYGDIEYCSVIK 153
Query: 263 DK------HIGFIEFIMPKHATHAV 281
+K +G++ ++ P A A+
Sbjct: 154 NKVTGESKGLGYVRYLKPSQAAQAI 178
Score = 111 (44.1 bits), Expect = 2.5e-16, Sum P(2) = 2.5e-16
Identities = 23/79 (29%), Positives = 43/79 (54%)
Query: 228 KNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKHIGFIEFIMPKHATHAVSTMNGH 287
K ++F+ P + E++F RFG + LVS K++G++++ A A++T++G
Sbjct: 391 KERLFIVFNPHPLPLDVLEDIFCRFGNLIEVYLVSGKNVGYVKYADRMSANDAITTLHGK 450
Query: 288 VFKSKPLKVTLSGTKPGVS 306
+ LKV L+ + VS
Sbjct: 451 ILNGVRLKVMLADSPREVS 469
Score = 57 (25.1 bits), Expect = 9.9e-06, Sum P(3) = 9.9e-06
Identities = 14/48 (29%), Positives = 25/48 (52%)
Query: 45 SVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKA 91
S + L +FK +G + V +NK ES+G + + P++A +A
Sbjct: 130 SYTEEDLREKFKVYGDIEYCSVIKNKVTGESKGLGYVRYLKPSQAAQA 177
Score = 41 (19.5 bits), Expect = 9.9e-06, Sum P(3) = 9.9e-06
Identities = 14/50 (28%), Positives = 26/50 (52%)
Query: 144 EEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNG 193
EE+L S F + ++ RD + G G +Q+F+ +A A +++G
Sbjct: 260 EEQLFSIFDIVPGLEYCEVHRDPY-LNYGHGVVQYFNVASAVYAQYKLHG 308
>UNIPROTKB|P31483 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0017091 "AU-rich
element binding" evidence=IEA] [GO:0017148 "negative regulation of
translation" evidence=IEA] [GO:0042036 "negative regulation of
cytokine biosynthetic process" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0048024 "regulation of mRNA splicing, via spliceosome"
evidence=IDA] [GO:0006917 "induction of apoptosis" evidence=TAS]
[GO:0008143 "poly(A) RNA binding" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0006915 EMBL:CH471053
GO:GO:0006917 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
GO:GO:0008143 HOGENOM:HOG000206748 KO:K13201 EMBL:M77142
EMBL:S70114 EMBL:AC016700 IPI:IPI00291398 IPI:IPI00333996
PIR:A39293 RefSeq:NP_071320.2 RefSeq:NP_071505.2 UniGene:Hs.413123
PDB:3BS9 PDBsum:3BS9 ProteinModelPortal:P31483 SMR:P31483
IntAct:P31483 STRING:P31483 PhosphoSite:P31483 DMDM:206729905
PaxDb:P31483 PRIDE:P31483 Ensembl:ENST00000415783
Ensembl:ENST00000433529 GeneID:7072 KEGG:hsa:7072 UCSC:uc002sgj.4
UCSC:uc002sgk.4 CTD:7072 GeneCards:GC02M070437 HGNC:HGNC:11802
MIM:603518 neXtProt:NX_P31483 PharmGKB:PA36511 HOVERGEN:HBG105006
InParanoid:P31483 OrthoDB:EOG4B5P59 PhylomeDB:P31483 ChiTaRS:TIA1
EvolutionaryTrace:P31483 GenomeRNAi:7072 NextBio:27655
ArrayExpress:P31483 Bgee:P31483 CleanEx:HS_TIA1
Genevestigator:P31483 GermOnline:ENSG00000116001 Uniprot:P31483
Length = 386
Score = 216 (81.1 bits), Expect = 4.0e-16, P = 4.0e-16
Identities = 74/299 (24%), Positives = 126/299 (42%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK--NDESRGFAIIVFNTPAEAKKARVE 94
L+V NL V ++ F + G ++ ++ + ND + + F+ A A
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP---YCFVEFHEHRHAAAALAA 65
Query: 95 MNGHLIGSKPVIITFVELKPGQR----SKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
MNG I K V + + Q+ S V ++ VFV +L + E++K+
Sbjct: 66 MNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAA 125
Query: 151 FIKFGNIIEVKIVRD-ENGKSKGFGFIQFFSYKAAEKAIIEMNG-----RMIQHN-STFV 203
F FG I + ++V+D GKSKG+GF+ FF+ AE AI +M G R I+ N +T
Sbjct: 126 FAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 185
Query: 204 SLA--EIXXXXXXXXXXXXXLLQPARKN-KIFVANLPSNINNSEFEELFARFGTITSSSL 260
A + Q + N ++ + S + + F+ FG I +
Sbjct: 186 PPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRV 245
Query: 261 VSDKHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKPGVSITNPTKAPKKPAY 319
DK F+ F + A HA+ ++NG + +K K + + NP + + Y
Sbjct: 246 FPDKGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWG--KETLDMINPVQQQNQIGY 302
>UNIPROTKB|F8W8I6 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC016700
HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00926358
ProteinModelPortal:F8W8I6 SMR:F8W8I6 PRIDE:F8W8I6
Ensembl:ENST00000282574 ArrayExpress:F8W8I6 Bgee:F8W8I6
Uniprot:F8W8I6
Length = 385
Score = 214 (80.4 bits), Expect = 7.4e-16, P = 7.4e-16
Identities = 76/288 (26%), Positives = 122/288 (42%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK--NDESRGFAIIVFNTPAEAKKARVE 94
L+V NL V ++ F + G ++ ++ + ND + + F+ A A
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP---YCFVEFHEHRHAAAALAA 65
Query: 95 MNGHLIGSKPVIITFVELKPGQR----SKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
MNG I K V + + Q+ S V ++ VFV +L + E++K+
Sbjct: 66 MNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAA 125
Query: 151 FIKFGNIIEVKIVRD-ENGKSKGFGFIQFFSYKAAEKAIIEMNG-----RMIQHN-STFV 203
F FG I + ++V+D GKSKG+GF+ FF+ AE AI +M G R I+ N +T
Sbjct: 126 FAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 185
Query: 204 SLA--EIXXXXXXXXXXXXXLLQPARKN-KIFVANLPSNINNSEFEELFARFGTITSSSL 260
A + Q + N ++ + S + + F+ FG I +
Sbjct: 186 PPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRV 245
Query: 261 VSDKHIGFIEFIMPKHATHAV-----STMNGHVFKSKPLKVTLSGTKP 303
DK F+ F + A HA+ +T+ GHV K K TL P
Sbjct: 246 FPDKGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDMINP 293
>UNIPROTKB|H0YBN4 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000523555
Uniprot:H0YBN4
Length = 175
Score = 155 (59.6 bits), Expect = 8.1e-11, P = 8.1e-11
Identities = 41/132 (31%), Positives = 71/132 (53%)
Query: 38 HVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNG 97
+VN +P+ +AL + F ++ V ++N S+G+ + F T A++A +MNG
Sbjct: 51 YVNFQQPADAERAL--DTMNFDVIKGKPVVCDENG-SKGYGFVHFETQEAAERAIEKMNG 107
Query: 98 HLIGSKPVII-TFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
L+ + V + F K +R +G K++ V++KN E +D+E LK F KFG
Sbjct: 108 MLLNDRKVFVGRFKSRK--EREAELGARAKEFTN--VYIKNFGEDMDDERLKDLFGKFGP 163
Query: 157 IIEVKIVRDENG 168
+ VK++ DE+G
Sbjct: 164 ALSVKVMTDESG 175
Score = 126 (49.4 bits), Expect = 1.1e-15, Sum P(2) = 1.1e-15
Identities = 32/111 (28%), Positives = 61/111 (54%)
Query: 156 NIIEVK-IVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXX 214
++I+ K +V DENG SKG+GF+ F + +AAE+AI +MNG ++ FV +
Sbjct: 70 DVIKGKPVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK------S 122
Query: 215 XXXXXXXLLQPARK-NKIFVANLPSNINNSEFEELFARFGTITSSSLVSDK 264
L A++ +++ N ++++ ++LF +FG S +++D+
Sbjct: 123 RKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 173
Score = 107 (42.7 bits), Expect = 1.1e-15, Sum P(2) = 1.1e-15
Identities = 25/71 (35%), Positives = 38/71 (53%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L P V L +F G + +RV R+ S G+A + F PA+A++A M
Sbjct: 8 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 67
Query: 96 NGHLIGSKPVI 106
N +I KPV+
Sbjct: 68 NFDVIKGKPVV 78
Score = 47 (21.6 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 14/49 (28%), Positives = 21/49 (42%)
Query: 252 FGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
F I +V D K GF+ F + A A+ MNG + + + V
Sbjct: 69 FDVIKGKPVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 117
>UNIPROTKB|Q0VBZ6 [details] [associations]
symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
protein" species:9913 "Bos taurus" [GO:0048024 "regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0042036 "negative
regulation of cytokine biosynthetic process" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
GO:GO:0048024 eggNOG:COG0724 GeneTree:ENSGT00680000099967
HOGENOM:HOG000206748 KO:K13201 CTD:7072 HOVERGEN:HBG105006
OrthoDB:EOG4B5P59 OMA:TSAPWMG EMBL:DAAA02031534 EMBL:BC120427
IPI:IPI00707848 RefSeq:NP_001069577.1 UniGene:Bt.91654 SMR:Q0VBZ6
Ensembl:ENSBTAT00000025528 GeneID:538533 KEGG:bta:538533
InParanoid:Q0VBZ6 NextBio:20877426 Uniprot:Q0VBZ6
Length = 384
Score = 213 (80.0 bits), Expect = 1.1e-15, P = 1.1e-15
Identities = 74/299 (24%), Positives = 125/299 (41%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK--NDESRGFAIIVFNTPAEAKKARVE 94
L+V NL V ++ F + G ++ ++ + ND + + F A A
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP---YCFVEFYEHRHAAAALAA 65
Query: 95 MNGHLIGSKPVIITFVELKPGQR----SKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
MNG I K V + + Q+ S V ++ VFV +L + E++K+
Sbjct: 66 MNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAA 125
Query: 151 FIKFGNIIEVKIVRD-ENGKSKGFGFIQFFSYKAAEKAIIEMNG-----RMIQHN-STFV 203
F FG I + ++V+D GKSKG+GF+ FF+ AE AI +M G R I+ N +T
Sbjct: 126 FAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 185
Query: 204 SLA--EIXXXXXXXXXXXXXLLQPARKN-KIFVANLPSNINNSEFEELFARFGTITSSSL 260
A + Q + N ++ + S + + F+ FG I +
Sbjct: 186 PPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRV 245
Query: 261 VSDKHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKPGVSITNPTKAPKKPAY 319
DK F+ F + A HA+ ++NG + +K K + + NP + + Y
Sbjct: 246 FPDKGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWG--KETLDMINPVQQQNQIGY 302
>UNIPROTKB|F1PWU8 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 OMA:TSAPWMG EMBL:AAEX03007635
EMBL:AAEX03007634 Ensembl:ENSCAFT00000005363 Uniprot:F1PWU8
Length = 393
Score = 213 (80.0 bits), Expect = 1.2e-15, P = 1.2e-15
Identities = 74/299 (24%), Positives = 125/299 (41%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK--NDESRGFAIIVFNTPAEAKKARVE 94
L+V NL V ++ F + G ++ ++ + ND + + F A A
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP---YCFVEFYEHRHAAAALAA 65
Query: 95 MNGHLIGSKPVIITFVELKPGQR----SKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
MNG I K V + + Q+ S V ++ VFV +L + E++K+
Sbjct: 66 MNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAA 125
Query: 151 FIKFGNIIEVKIVRD-ENGKSKGFGFIQFFSYKAAEKAIIEMNG-----RMIQHN-STFV 203
F FG I + ++V+D GKSKG+GF+ FF+ AE AI +M G R I+ N +T
Sbjct: 126 FAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 185
Query: 204 SLA--EIXXXXXXXXXXXXXLLQPARKN-KIFVANLPSNINNSEFEELFARFGTITSSSL 260
A + Q + N ++ + S + + F+ FG I +
Sbjct: 186 PPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRV 245
Query: 261 VSDKHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKPGVSITNPTKAPKKPAY 319
DK F+ F + A HA+ ++NG + +K K + + NP + + Y
Sbjct: 246 FPDKGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWG--KETLDMINPVQQQNQIGY 302
>UNIPROTKB|H0YEQ8 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL365277 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000470443 Uniprot:H0YEQ8
Length = 112
Score = 196 (74.1 bits), Expect = 1.6e-15, P = 1.6e-15
Identities = 46/115 (40%), Positives = 68/115 (59%)
Query: 82 FNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVET 141
F PA+A++A MN +I KP+ I + + P R VG VF+KNL ++
Sbjct: 3 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVG---------NVFIKNLDKS 53
Query: 142 VDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMI 196
+D + L F FGNI+ K+V DENG SKG+ F+ F + +AA+KAI +MNG ++
Sbjct: 54 IDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLL 107
Score = 119 (46.9 bits), Expect = 7.9e-07, P = 7.9e-07
Identities = 25/67 (37%), Positives = 40/67 (59%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
+ NL+ S+DN+AL + F FG + +V ++N S+G+A + F T A KA +MNG
Sbjct: 47 IKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGM 105
Query: 99 LIGSKPV 105
L+ + V
Sbjct: 106 LLNDRKV 112
>RGD|1305742 [details] [associations]
symbol:Tia1 "TIA1 cytotoxic granule-associated RNA binding
protein" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA;ISO] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO] [GO:0017148 "negative regulation of
translation" evidence=IEA;ISO] [GO:0042036 "negative regulation of
cytokine biosynthetic process" evidence=IEA;ISO] [GO:0048024
"regulation of mRNA splicing, via spliceosome" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CH473957 eggNOG:COG0724
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
CTD:7072 HOVERGEN:HBG105006 EMBL:BC087064 IPI:IPI00563419
RefSeq:NP_001012096.1 UniGene:Rn.198158 SMR:Q5PQR7 STRING:Q5PQR7
Ensembl:ENSRNOT00000023103 GeneID:312510 KEGG:rno:312510
UCSC:RGD:1305742 NextBio:664964 Genevestigator:Q5PQR7
Uniprot:Q5PQR7
Length = 375
Score = 211 (79.3 bits), Expect = 1.8e-15, P = 1.8e-15
Identities = 82/300 (27%), Positives = 126/300 (42%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK--NDESRGFAIIVFNTPAEAKKARVE 94
L+V NL V ++ F + G ++ ++ + ND + + F+ A A
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP---YCFVEFHEHRHAAAALAA 65
Query: 95 MNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKF 154
MNG I K E+K + P ++ VFV +L + E++K+ F F
Sbjct: 66 MNGRKIMGK-------EVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPF 118
Query: 155 GNIIEVKIVRD-ENGKSKGFGFIQFFSYKAAEKAIIEMNG-----RMIQHN-STFVSLA- 206
G I + ++V+D GKSKG+GF+ FF+ AE AI +M G R I+ N +T A
Sbjct: 119 GRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAP 178
Query: 207 -EIXXXXXXXXXXXXXLLQPARKN-KIFVANLPSNINNSEFEELFARFGTITSSSLVSDK 264
+ Q + N ++ + S + + F+ FG I + DK
Sbjct: 179 KSTYESNTKQLSYDEVVSQSSPGNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDK 238
Query: 265 HIGFIEFIMPKHATHAV-----STMNGHVFKSKPLKVTLSGTKPGVSITNPTKAPKKPAY 319
FI F + A HA+ +T+ GHV K K TL P V N P PAY
Sbjct: 239 GYSFIRFSSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDMINP-VQQQNQIGYP--PAY 295
>UNIPROTKB|Q8IUH3 [details] [associations]
symbol:RBM45 "RNA-binding protein 45" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0030154
"cell differentiation" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0003723 "RNA
binding" evidence=IDA] [GO:0007399 "nervous system development"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AB036991 GO:GO:0005634
GO:GO:0005737 GO:GO:0007399 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AF526533 EMBL:BC066549
IPI:IPI00216750 IPI:IPI00552178 IPI:IPI00789303 RefSeq:NP_694453.2
UniGene:Hs.377257 ProteinModelPortal:Q8IUH3 SMR:Q8IUH3
IntAct:Q8IUH3 STRING:Q8IUH3 PhosphoSite:Q8IUH3 DMDM:59797947
PaxDb:Q8IUH3 PRIDE:Q8IUH3 DNASU:129831 Ensembl:ENST00000286070
GeneID:129831 KEGG:hsa:129831 UCSC:uc002ulv.3 CTD:129831
GeneCards:GC02P178977 HGNC:HGNC:24468 HPA:HPA020448 MIM:608888
neXtProt:NX_Q8IUH3 PharmGKB:PA162400809 eggNOG:NOG145324
HOGENOM:HOG000231828 HOVERGEN:HBG051404 InParanoid:Q8IUH3
OMA:DIWVVKD ChiTaRS:RBM45 GenomeRNAi:129831 NextBio:82648
Bgee:Q8IUH3 CleanEx:HS_RBM45 Genevestigator:Q8IUH3
GermOnline:ENSG00000155636 Uniprot:Q8IUH3
Length = 476
Score = 159 (61.0 bits), Expect = 2.1e-15, Sum P(2) = 2.1e-15
Identities = 41/146 (28%), Positives = 82/146 (56%)
Query: 49 QALINE-FKKFGTLRDVRVARNKND-ESRGFAIIVFNTPAEAKKARVEMNGHLIG---SK 103
++++ E F FG ++D+ V R+K+ ES+G A + F ++A +A EM+G +G +K
Sbjct: 38 ESVLRERFSPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQACRAMEEMHGQCLGPNDTK 97
Query: 104 PVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIV 163
P+ + + + + V EE ++FV + ++ EE+L+ F +G+I I+
Sbjct: 98 PIKVFIAQSRSSGSHRDVEDEELT----RIFVM-IPKSYTEEDLREKFKVYGDIEYCSII 152
Query: 164 RDE-NGKSKGFGFIQFFSYKAAEKAI 188
+++ G+SKG G++++ A +AI
Sbjct: 153 KNKVTGESKGLGYVRYLKPSQAAQAI 178
Score = 129 (50.5 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 37/145 (25%), Positives = 67/145 (46%)
Query: 144 EEELKSHFIKFGNIIEVKIVRDENGK-SKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTF 202
E L+ F FG+I ++ +VRD++ K SKG F++F A +A+ EM+G+ + N T
Sbjct: 38 ESVLRERFSPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQACRAMEEMHGQCLGPNDTK 97
Query: 203 VSLAEIXXXXXXXXXXXXXLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
I ++ +IFV +P + + E F +G I S++
Sbjct: 98 PIKVFIAQSRSSGSHRD---VEDEELTRIFVM-IPKSYTEEDLREKFKVYGDIEYCSIIK 153
Query: 263 DK------HIGFIEFIMPKHATHAV 281
+K +G++ ++ P A A+
Sbjct: 154 NKVTGESKGLGYVRYLKPSQAAQAI 178
Score = 102 (41.0 bits), Expect = 2.1e-15, Sum P(2) = 2.1e-15
Identities = 21/72 (29%), Positives = 39/72 (54%)
Query: 228 KNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKHIGFIEFIMPKHATHAVSTMNGH 287
K ++F+ P + E++F RFG + LVS K++G+ ++ A A++T++G
Sbjct: 391 KERLFIVFNPHPLPLDVLEDIFCRFGNLIEVYLVSGKNVGYAKYADRISANDAIATLHGK 450
Query: 288 VFKSKPLKVTLS 299
+ LKV L+
Sbjct: 451 ILNGVRLKVMLA 462
>UNIPROTKB|G4N7J4 [details] [associations]
symbol:MGG_06400 "Nuclear and cytoplasmic polyadenylated
RNA-binding protein pub1" species:242507 "Magnaporthe oryzae 70-15"
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CM001234
KO:K13201 RefSeq:XP_003717170.1 ProteinModelPortal:G4N7J4
EnsemblFungi:MGG_06400T0 GeneID:2684555 KEGG:mgr:MGG_06400
Uniprot:G4N7J4
Length = 479
Score = 164 (62.8 bits), Expect = 2.3e-15, Sum P(2) = 2.3e-15
Identities = 40/161 (24%), Positives = 78/161 (48%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L+V L+ V L F+ G +++V++ +KN + + + ++ P A +A +N
Sbjct: 87 LYVGGLDARVTEDVLRQIFETTGHVQNVKIIPDKNAKGYNYGFVEYDDPGAADRAMQTLN 146
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G + + + + +K E +FV +L V++E L F FG+
Sbjct: 147 GRRVHQSEIRVNWAYQAATSATK-----EDTSNHFHIFVGDLSNEVNDEVLTQAFSVFGS 201
Query: 157 IIEVKIVRD-ENGKSKGFGFIQFFSYKAAEKAIIEMNGRMI 196
+ E +++ D + G+S+G+GF+ F AEKA+ M+G +
Sbjct: 202 VSEARVMWDMKTGRSRGYGFVAFRDRSDAEKALSSMDGEWL 242
Score = 158 (60.7 bits), Expect = 9.8e-09, P = 9.8e-09
Identities = 51/203 (25%), Positives = 93/203 (45%)
Query: 112 LKPGQR-SKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKS 170
+ PG ++ PE K ++V L V E+ L+ F G++ VKI+ D+N K
Sbjct: 68 MSPGGTFTRRTAPEPN---KRALYVGGLDARVTEDVLRQIFETTGHVQNVKIIPDKNAKG 124
Query: 171 KGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXXXXXXXXLLQPARKNK 230
+GF+++ AA++A+ +NGR + H S EI +
Sbjct: 125 YNYGFVEYDDPGAADRAMQTLNGRRV-HQS------EIRVNWAYQAATSATKEDTSNHFH 177
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTM 284
IFV +L + +N+ + F+ FG+++ + ++ D + GF+ F A A+S+M
Sbjct: 178 IFVGDLSNEVNDEVLTQAFSVFGSVSEARVMWDMKTGRSRGYGFVAFRDRSDAEKALSSM 237
Query: 285 NGHVFKSKPLKVTLSGTKPGVSI 307
+G S+ ++ + K SI
Sbjct: 238 DGEWLGSRAIRCNWANQKGQPSI 260
Score = 105 (42.0 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 25/83 (30%), Positives = 44/83 (53%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKKARVEM 95
+ V +L V+++ L F FG++ + RV + K SRG+ + F ++A+KA M
Sbjct: 178 IFVGDLSNEVNDEVLTQAFSVFGSVSEARVMWDMKTGRSRGYGFVAFRDRSDAEKALSSM 237
Query: 96 NGHLIGSKPVIITFVELKPGQRS 118
+G +GS+ + + K GQ S
Sbjct: 238 DGEWLGSRAIRCNWANQK-GQPS 259
Score = 96 (38.9 bits), Expect = 2.3e-15, Sum P(2) = 2.3e-15
Identities = 24/86 (27%), Positives = 40/86 (46%)
Query: 225 PARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKHIGFIEFIMPKHATHAVSTM 284
PA + +V NL ++ LF FG + S +D+ FI+ ++A A+ +
Sbjct: 298 PAYQTTCYVGNLTPYTTANDVVPLFQNFGYVVESRFQADRGFAFIKMDSHENAAQAICGL 357
Query: 285 NGHVFKSKPLKVTLSGTKPGVSITNP 310
NG+ +PLK + K + TNP
Sbjct: 358 NGYNVNGRPLKCSWGKDK---NSTNP 380
Score = 67 (28.6 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 18/60 (30%), Positives = 30/60 (50%)
Query: 134 FVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNG 193
+V NL ++ F FG ++E + D +GF FI+ S++ A +AI +NG
Sbjct: 305 YVGNLTPYTTANDVVPLFQNFGYVVESRFQAD-----RGFAFIKMDSHENAAQAICGLNG 359
>UNIPROTKB|B1AM48 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623 UniGene:Hs.166109
HGNC:HGNC:3313 OrthoDB:EOG4JHCFV IPI:IPI00184721 SMR:B1AM48
Ensembl:ENST00000440102 Uniprot:B1AM48
Length = 189
Score = 194 (73.4 bits), Expect = 2.8e-15, P = 2.8e-15
Identities = 55/176 (31%), Positives = 84/176 (47%)
Query: 118 SKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFI 176
S PV + K + V L + + +EELKS F G I K+VRD+ G+S G+GF+
Sbjct: 26 SSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFV 85
Query: 177 QFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXXXXXXXXLLQPARKNKIFVANL 236
+ K AEKAI +NG +Q + VS A R ++V+ L
Sbjct: 86 NYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASI-------------RDANLYVSGL 132
Query: 237 PSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNG 286
P + E E+LF+++G I +S ++ D + +GFI F A A+ +NG
Sbjct: 133 PKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 153 (58.9 bits), Expect = 1.4e-10, P = 1.4e-10
Identities = 43/160 (26%), Positives = 82/160 (51%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L VN L ++ + L + F G + ++ R+K +S G+ + + P +A+KA +
Sbjct: 41 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 100
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
NG + +K + +++ P + ++V L +T+ ++EL+ F ++G
Sbjct: 101 NGLRLQTKTIKVSYAR-----------PSSASIRDANLYVSGLPKTMTQKELEQLFSQYG 149
Query: 156 NIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEMNGR 194
II +I+ D+ G S+G GFI+F AE+AI +NG+
Sbjct: 150 RIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 189
Score = 118 (46.6 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 28/76 (36%), Positives = 40/76 (52%)
Query: 228 KNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDK------HIGFIEFIMPKHATHAV 281
K + V LP N+ E + LF G I S LV DK GF+ +I PK A A+
Sbjct: 38 KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 97
Query: 282 STMNGHVFKSKPLKVT 297
+T+NG ++K +KV+
Sbjct: 98 NTLNGLRLQTKTIKVS 113
>UNIPROTKB|Q01085 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0003723 "RNA binding" evidence=TAS] [GO:0006952
"defense response" evidence=TAS] [GO:0005764 "lysosome"
evidence=TAS] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0006917 "induction of
apoptosis" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0006915 GO:GO:0006952 GO:GO:0006917 GO:GO:0000166
GO:GO:0008284 Gene3D:3.30.70.330 GO:GO:0006357 GO:GO:0005764
GO:GO:0003723 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:M96954 EMBL:AK290695
EMBL:AK290984 IPI:IPI00005615 IPI:IPI00644708 PIR:A46174
RefSeq:NP_001029097.1 RefSeq:NP_003243.1 UniGene:Hs.501203 PDB:1X4G
PDB:2CQI PDB:2DH7 PDBsum:1X4G PDBsum:2CQI PDBsum:2DH7
ProteinModelPortal:Q01085 SMR:Q01085 DIP:DIP-42425N IntAct:Q01085
MINT:MINT-1203913 STRING:Q01085 PhosphoSite:Q01085 DMDM:267131
PaxDb:Q01085 PRIDE:Q01085 Ensembl:ENST00000369093
Ensembl:ENST00000436547 GeneID:7073 KEGG:hsa:7073 UCSC:uc001lei.1
CTD:7073 GeneCards:GC10M121324 HGNC:HGNC:11804 MIM:603413
neXtProt:NX_Q01085 PharmGKB:PA36513 OMA:EEVYNQS PhylomeDB:Q01085
ChiTaRS:TIAL1 EvolutionaryTrace:Q01085 GenomeRNAi:7073
NextBio:27661 ArrayExpress:Q01085 Bgee:Q01085 CleanEx:HS_TIAL1
Genevestigator:Q01085 GermOnline:ENSG00000151923 Uniprot:Q01085
Length = 375
Score = 209 (78.6 bits), Expect = 3.4e-15, P = 3.4e-15
Identities = 67/269 (24%), Positives = 117/269 (43%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L+V NL V ++ F + G + ++ ++ + + + F +A A MN
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMI-TEHTSNDPYCFVEFYEHRDAAAALAAMN 69
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G I K E+K + P ++ VFV +L + E++KS F FG
Sbjct: 70 GRKILGK-------EVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGK 122
Query: 157 IIEVKIVRD-ENGKSKGFGFIQFFSYKAAEKAIIEMNG-----RMIQHN-STFVSLA--E 207
I + ++V+D GKSKG+GF+ F++ AE AI+ M G R I+ N +T A
Sbjct: 123 ISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKS 182
Query: 208 IXXXXXXXXXXXXXLLQPARKN-KIFVANLPSNINNSEFEELFARFGTITSSSLVSDKHI 266
+ Q + KN ++ + S + + + F+ FG I + +K
Sbjct: 183 TQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGY 242
Query: 267 GFIEFIMPKHATHAVSTMNGHVFKSKPLK 295
F+ F + A HA+ ++NG + +K
Sbjct: 243 SFVRFSTHESAAHAIVSVNGTTIEGHVVK 271
Score = 114 (45.2 bits), Expect = 0.00062, P = 0.00062
Identities = 41/177 (23%), Positives = 71/177 (40%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMN 192
++V NL V E + F + G K++ E+ + + F++F+ ++ A A+ MN
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMIT-EHTSNDPYCFVEFYEHRDAAAALAAMN 69
Query: 193 GRMIQHNSTFVSLAEIXXXXXXXXXXXXXLLQPARKNKIFVANLPSNINNSEFEELFARF 252
GR I V+ A +FV +L I + + FA F
Sbjct: 70 GRKILGKEVKVNWATTPSSQKKDTSNHFH---------VFVGDLSPEITTEDIKSAFAPF 120
Query: 253 GTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKP 303
G I+ + +V D K GF+ F A +A+ M G + ++ + KP
Sbjct: 121 GKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKP 177
>UNIPROTKB|F2Z4H8 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017145 "stem cell division" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA] [GO:0008284 "positive regulation of
cell proliferation" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:NGSKQLR
EMBL:DAAA02059399 IPI:IPI00707976 RefSeq:NP_001179985.1
UniGene:Bt.15754 ProteinModelPortal:F2Z4H8
Ensembl:ENSBTAT00000005331 GeneID:614540 KEGG:bta:614540
NextBio:20899153 Uniprot:F2Z4H8
Length = 380
Score = 209 (78.6 bits), Expect = 3.6e-15, P = 3.6e-15
Identities = 67/269 (24%), Positives = 117/269 (43%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L+V NL V ++ F + G + ++ ++ + + + F +A A MN
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMI-TEHTSNDPYCFVEFYEHRDAAAALAAMN 69
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G I K E+K + P ++ VFV +L + E++KS F FG
Sbjct: 70 GRKILGK-------EVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGK 122
Query: 157 IIEVKIVRD-ENGKSKGFGFIQFFSYKAAEKAIIEMNG-----RMIQHN-STFVSLA--E 207
I + ++V+D GKSKG+GF+ F++ AE AI+ M G R I+ N +T A
Sbjct: 123 ISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKS 182
Query: 208 IXXXXXXXXXXXXXLLQPARKN-KIFVANLPSNINNSEFEELFARFGTITSSSLVSDKHI 266
+ Q + KN ++ + S + + + F+ FG I + +K
Sbjct: 183 TQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGY 242
Query: 267 GFIEFIMPKHATHAVSTMNGHVFKSKPLK 295
F+ F + A HA+ ++NG + +K
Sbjct: 243 SFVRFSTHESAAHAIVSVNGTTIEGHVVK 271
Score = 114 (45.2 bits), Expect = 0.00063, P = 0.00063
Identities = 41/177 (23%), Positives = 71/177 (40%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMN 192
++V NL V E + F + G K++ E+ + + F++F+ ++ A A+ MN
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMIT-EHTSNDPYCFVEFYEHRDAAAALAAMN 69
Query: 193 GRMIQHNSTFVSLAEIXXXXXXXXXXXXXLLQPARKNKIFVANLPSNINNSEFEELFARF 252
GR I V+ A +FV +L I + + FA F
Sbjct: 70 GRKILGKEVKVNWATTPSSQKKDTSNHFH---------VFVGDLSPEITTEDIKSAFAPF 120
Query: 253 GTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKP 303
G I+ + +V D K GF+ F A +A+ M G + ++ + KP
Sbjct: 121 GKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKP 177
>TAIR|locus:2116322 [details] [associations]
symbol:ATRBP45C species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005829
GO:GO:0005634 EMBL:CP002687 EMBL:AL161566 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 EMBL:AL035440 HSSP:P19339
GO:GO:0008143 OMA:YANRACA HOGENOM:HOG000186228 EMBL:AF370339
EMBL:AY054487 EMBL:AY062999 EMBL:AY093292 IPI:IPI00516600
PIR:T04823 RefSeq:NP_567764.1 UniGene:At.47594 UniGene:At.67098
UniGene:At.67775 ProteinModelPortal:Q93W34 SMR:Q93W34 IntAct:Q93W34
STRING:Q93W34 PRIDE:Q93W34 EnsemblPlants:AT4G27000.1 GeneID:828808
KEGG:ath:AT4G27000 TAIR:At4g27000 ProtClustDB:CLSN2917618
Genevestigator:Q93W34 Uniprot:Q93W34
Length = 415
Score = 210 (79.0 bits), Expect = 3.7e-15, P = 3.7e-15
Identities = 71/288 (24%), Positives = 121/288 (42%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L + +L+P +D L+N F G +V RNK N S G+ I F A A++
Sbjct: 82 LWIGDLQPWMDENYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFVNHATAERNLQTY 141
Query: 96 NGHLIGSKPVI--ITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHF-I 152
NG + S + + +L G+R + GPE VFV +L V + L F
Sbjct: 142 NGAPMPSSEQAFRLNWAQLGAGERRQAEGPEHT------VFVGDLAPDVTDHMLTETFKA 195
Query: 153 KFGNIIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE---- 207
+ ++ K+V D G+SKG+GF++F +A+ EMNG+ A
Sbjct: 196 VYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTEMNGQYCSSRPMRTGPAANKKP 255
Query: 208 --IXXXXXXXXXXXXXLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKH 265
+ P IFV + ++ + + +F +FG + + + K
Sbjct: 256 LTMQPASYQNTQGNSGESDPTNTT-IFVGAVDQSVTEDDLKSVFGQFGELVHVKIPAGKR 314
Query: 266 IGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKPGVSITNPTKA 313
GF+++ A A+S +NG + ++++ G P T P +A
Sbjct: 315 CGFVQYANRACAEQALSVLNGTQLGGQSIRLSW-GRSPSNKQTQPDQA 361
>UNIPROTKB|Q3MHF0 [details] [associations]
symbol:RBM45 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 CTD:129831 eggNOG:NOG145324 HOGENOM:HOG000231828
HOVERGEN:HBG051404 OMA:DIWVVKD GeneTree:ENSGT00680000100059
OrthoDB:EOG43R3MJ EMBL:DAAA02004143 EMBL:BC105262 IPI:IPI00711970
RefSeq:NP_001124225.1 UniGene:Bt.48322 STRING:Q3MHF0
Ensembl:ENSBTAT00000008111 GeneID:535331 KEGG:bta:535331
InParanoid:Q3MHF0 NextBio:20876704 Uniprot:Q3MHF0
Length = 474
Score = 156 (60.0 bits), Expect = 3.8e-15, Sum P(2) = 3.8e-15
Identities = 41/147 (27%), Positives = 82/147 (55%)
Query: 48 NQALINE-FKKFGTLRDVRVARNKND-ESRGFAIIVFNTPAEAKKARVEMNGHLI---GS 102
+++++ E F FG ++D+ V R+K+ ES+G A + F ++A +A EM+G + +
Sbjct: 37 SESVLRERFSPFGEIQDIWVVRDKHTKESKGIAFVKFARSSQACRAMEEMHGQCLTPSDT 96
Query: 103 KPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKI 162
KP+ + + + + V EE ++FV + ++ EE+L+ F FG+I I
Sbjct: 97 KPIKVFIAQSRSSGSHRDVEDEELT----RIFVM-IPKSYTEEDLREKFKVFGDIEYCSI 151
Query: 163 VRDE-NGKSKGFGFIQFFSYKAAEKAI 188
++++ G+SKG G++++ A +AI
Sbjct: 152 IKNKVTGESKGLGYVRYLKPSQAAQAI 178
Score = 127 (49.8 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 37/145 (25%), Positives = 66/145 (45%)
Query: 144 EEELKSHFIKFGNIIEVKIVRDENGK-SKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTF 202
E L+ F FG I ++ +VRD++ K SKG F++F A +A+ EM+G+ + + T
Sbjct: 38 ESVLRERFSPFGEIQDIWVVRDKHTKESKGIAFVKFARSSQACRAMEEMHGQCLTPSDTK 97
Query: 203 VSLAEIXXXXXXXXXXXXXLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
I ++ +IFV +P + + E F FG I S++
Sbjct: 98 PIKVFIAQSRSSGSHRD---VEDEELTRIFVM-IPKSYTEEDLREKFKVFGDIEYCSIIK 153
Query: 263 DK------HIGFIEFIMPKHATHAV 281
+K +G++ ++ P A A+
Sbjct: 154 NKVTGESKGLGYVRYLKPSQAAQAI 178
Score = 103 (41.3 bits), Expect = 3.8e-15, Sum P(2) = 3.8e-15
Identities = 21/72 (29%), Positives = 39/72 (54%)
Query: 228 KNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKHIGFIEFIMPKHATHAVSTMNGH 287
K ++F+ P + E++F RFG + LVS K++G+ ++ A A++T++G
Sbjct: 389 KERLFIVFNPHPLPLDVLEDIFCRFGNLIEVYLVSGKNVGYAKYADRLSANDAITTLHGK 448
Query: 288 VFKSKPLKVTLS 299
+ LKV L+
Sbjct: 449 ILNGVRLKVMLA 460
Score = 59 (25.8 bits), Expect = 3.2e-05, Sum P(3) = 3.2e-05
Identities = 14/48 (29%), Positives = 25/48 (52%)
Query: 45 SVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKA 91
S + L +FK FG + + +NK ES+G + + P++A +A
Sbjct: 130 SYTEEDLREKFKVFGDIEYCSIIKNKVTGESKGLGYVRYLKPSQAAQA 177
Score = 43 (20.2 bits), Expect = 3.2e-05, Sum P(3) = 3.2e-05
Identities = 14/50 (28%), Positives = 26/50 (52%)
Query: 144 EEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNG 193
EE+L S F + ++ RD + G G +Q+F+ +A A +++G
Sbjct: 258 EEQLFSIFDIVPGLEYCEVQRDPYS-NYGHGVVQYFNVASAIYAKYKLHG 306
>UNIPROTKB|G4MY43 [details] [associations]
symbol:MGG_01268 "Nuclear localization sequence binding
protein" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001232 KO:K11294 RefSeq:XP_003714181.1
ProteinModelPortal:G4MY43 EnsemblFungi:MGG_01268T0 GeneID:2679652
KEGG:mgr:MGG_01268 Uniprot:G4MY43
Length = 486
Score = 211 (79.3 bits), Expect = 4.0e-15, P = 4.0e-15
Identities = 53/168 (31%), Positives = 85/168 (50%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKND-ESRGFAIIVFNTPAEAKKARVEM 95
L V NL +VD+ L EFK GT+ RV ++ S+GF + F TP EA+KA E
Sbjct: 241 LFVGNLSWNVDDAMLAEEFKFCGTVTSARVITDRESGRSKGFGYVDFATPEEAEKAHGEK 300
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQY------KKDKVFVKNLVETVDEEELKS 149
G I + + + F K + G K+Y + D +FV NL DE+ + +
Sbjct: 301 QGAFIDGREIKVDFSTGKATNSNDAAGARAKKYGDTVSPESDTLFVGNLPFDADEDSVGA 360
Query: 150 HFIKFGNIIEVKI-VRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMI 196
F + + +++ E+G+ KGFG++ F S + A+ A ++NG+ I
Sbjct: 361 FFSEVAEVKSLRLPTEQESGRRKGFGYVTFNSVEDAKSAFEQLNGQSI 408
Score = 144 (55.7 bits), Expect = 4.0e-07, P = 4.0e-07
Identities = 51/206 (24%), Positives = 85/206 (41%)
Query: 111 ELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKF-GNIIEVKIVRD-ENG 168
E P +++K E+ K +FV NL VD+ L F KF G + +++ D E+G
Sbjct: 223 EEAPAKKTKT----EESDKPSTLFVGNLSWNVDDAMLAEEF-KFCGTVTSARVITDRESG 277
Query: 169 KSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXXXXXXXX-----LL 223
+SKGFG++ F + + AEKA E G I V + +
Sbjct: 278 RSKGFGYVDFATPEEAEKAHGEKQGAFIDGREIKVDFSTGKATNSNDAAGARAKKYGDTV 337
Query: 224 QPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHA 277
P + +FV NLP + + F+ + S L ++ K G++ F + A
Sbjct: 338 SP-ESDTLFVGNLPFDADEDSVGAFFSEVAEVKSLRLPTEQESGRRKGFGYVTFNSVEDA 396
Query: 278 THAVSTMNGHVFKSKPLKVTLSGTKP 303
A +NG + ++ S +P
Sbjct: 397 KSAFEQLNGQSINGRNCRLDYSTPRP 422
>TAIR|locus:2157702 [details] [associations]
symbol:CP31B "chloroplast RNA-binding protein 31B"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0009451 "RNA modification"
evidence=IMP] [GO:0000023 "maltose metabolic process" evidence=RCA]
[GO:0006098 "pentose-phosphate shunt" evidence=RCA] [GO:0009409
"response to cold" evidence=RCA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0010027 "thylakoid
membrane organization" evidence=RCA] [GO:0019252 "starch
biosynthetic process" evidence=RCA] [GO:0019288 "isopentenyl
diphosphate biosynthetic process, mevalonate-independent pathway"
evidence=RCA] [GO:0019684 "photosynthesis, light reaction"
evidence=RCA] [GO:0042742 "defense response to bacterium"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0009570 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AB024031
eggNOG:COG0724 GO:GO:0009451 HOGENOM:HOG000276232 HSSP:P11940
ProtClustDB:CLSN2915857 UniGene:At.46085 UniGene:At.7917
EMBL:AY039868 EMBL:AY077660 IPI:IPI00537317 RefSeq:NP_199836.1
ProteinModelPortal:Q9FGS0 SMR:Q9FGS0 STRING:Q9FGS0 PaxDb:Q9FGS0
PRIDE:Q9FGS0 EnsemblPlants:AT5G50250.1 GeneID:835090
KEGG:ath:AT5G50250 TAIR:At5g50250 InParanoid:Q9FGS0 OMA:AAFRIYV
PhylomeDB:Q9FGS0 Genevestigator:Q9FGS0 Uniprot:Q9FGS0
Length = 289
Score = 202 (76.2 bits), Expect = 4.4e-15, P = 4.4e-15
Identities = 55/178 (30%), Positives = 94/178 (52%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKN-DESRGFAIIVFNTPAEAKKARVEM 95
L V NL VD+QAL F++ GT+ V N++ D+SRGF + +T EA+KA +
Sbjct: 115 LFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEKF 174
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVG--PEEKQYKKD---KVFVKNLVETVDEEELKSH 150
N + + + + R+ P G PE + D +++V NL VD L+
Sbjct: 175 NSFEVNGRRLTVN--------RAAPRGSRPERQPRVYDAAFRIYVGNLPWDVDSGRLERL 226
Query: 151 FIKFGNIIEVKIVRD-ENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
F + G +++ ++V D E G+S+GFGF+Q + AI ++G+ ++ + V++AE
Sbjct: 227 FSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKVNVAE 284
Score = 145 (56.1 bits), Expect = 9.7e-08, P = 9.7e-08
Identities = 47/187 (25%), Positives = 84/187 (44%)
Query: 120 PVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNI-IEVKIVRDENGKSKGFGFIQF 178
P PEE K+FV NL VD + L F + G + I I + +S+GFGF+
Sbjct: 107 PEPPEEA-----KLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTM 161
Query: 179 FSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXXXXXXXXLLQPARKNKIFVANLPS 238
+ + AEKA+ + N + V+ A + A + I+V NLP
Sbjct: 162 STVEEAEKAVEKFNSFEVNGRRLTVNRA---APRGSRPERQPRVYDAAFR--IYVGNLPW 216
Query: 239 NINNSEFEELFARFGTITSSSLVSDKH------IGFIEFIMPKHATHAVSTMNGHVFKSK 292
++++ E LF+ G + + +VSD+ GF++ A++ ++G + +
Sbjct: 217 DVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGR 276
Query: 293 PLKVTLS 299
+KV ++
Sbjct: 277 AIKVNVA 283
>UNIPROTKB|F1NEX8 [details] [associations]
symbol:RBM45 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 OMA:DIWVVKD GeneTree:ENSGT00680000100059
EMBL:AADN02020000 IPI:IPI00596036 ProteinModelPortal:F1NEX8
Ensembl:ENSGALT00000014983 Uniprot:F1NEX8
Length = 502
Score = 164 (62.8 bits), Expect = 5.5e-15, Sum P(2) = 5.5e-15
Identities = 45/147 (30%), Positives = 82/147 (55%)
Query: 49 QALINE-FKKFGTLRDVRVARNKN-DESRGFAIIVFNTPAEAKKARVEMNGHLI--GSKP 104
+ALI E F FG ++++ + R+K +ESRG A I F ++A +A EM+G + +KP
Sbjct: 66 EALIRERFAPFGDIQNIWLLRDKRTNESRGIAFIKFARSSQACRAMEEMHGRSLVPDTKP 125
Query: 105 VIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVR 164
+ + + + + V EE ++FV + +T EE+L+ F +G+I I++
Sbjct: 126 IKVFIAQSRASGSHRDVEDEELT----RIFVM-IPKTYTEEDLREKFKMYGDIEYCSIIK 180
Query: 165 DEN-GKSKGFGFIQFFSYKAAEKAIIE 190
++ G+SKG G++++ A +AI E
Sbjct: 181 NKTTGESKGLGYVRYLKPSQAARAIEE 207
Score = 116 (45.9 bits), Expect = 0.00058, P = 0.00058
Identities = 37/157 (23%), Positives = 72/157 (45%)
Query: 132 KVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAIIE 190
+VFV L + E ++ F FG+I + ++RD+ +S+G FI+F A +A+ E
Sbjct: 55 RVFVV-LGKDAGEALIRERFAPFGDIQNIWLLRDKRTNESRGIAFIKFARSSQACRAMEE 113
Query: 191 MNGRMIQHNSTFVSLAEIXXXXXXXXXXXXXLLQPARKNKIFVANLPSNINNSEFEELFA 250
M+GR + ++ + + I ++ +IFV +P + E F
Sbjct: 114 MHGRSLVPDTKPIKVF-IAQSRASGSHRD---VEDEELTRIFVM-IPKTYTEEDLREKFK 168
Query: 251 RFGTITSSSLVSDKH------IGFIEFIMPKHATHAV 281
+G I S++ +K +G++ ++ P A A+
Sbjct: 169 MYGDIEYCSIIKNKTTGESKGLGYVRYLKPSQAARAI 205
Score = 93 (37.8 bits), Expect = 5.5e-15, Sum P(2) = 5.5e-15
Identities = 20/72 (27%), Positives = 39/72 (54%)
Query: 228 KNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKHIGFIEFIMPKHATHAVSTMNGH 287
K ++FV P + + E++F RFG + LV+ K++ + +F A+ A++ ++G
Sbjct: 417 KERLFVLFHPHPLPVTILEDVFCRFGNLIKVYLVAGKNVAYAKFADRASASEAITALHGK 476
Query: 288 VFKSKPLKVTLS 299
+ LKV L+
Sbjct: 477 IVNGVRLKVRLA 488
>TAIR|locus:504955752 [details] [associations]
symbol:AT3G13224 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441 HSSP:Q14103
KO:K12741 OMA:HAINGHH EMBL:AP002042 EMBL:AY080630 EMBL:AY123003
EMBL:AK221448 IPI:IPI00534312 RefSeq:NP_683559.2 UniGene:At.27259
ProteinModelPortal:Q9LHL2 SMR:Q9LHL2 IntAct:Q9LHL2 PRIDE:Q9LHL2
EnsemblPlants:AT3G13224.2 GeneID:820515 KEGG:ath:AT3G13224
TAIR:At3g13224 InParanoid:Q9LHL2 PhylomeDB:Q9LHL2
ProtClustDB:CLSN2918087 Genevestigator:Q9LHL2 Uniprot:Q9LHL2
Length = 358
Score = 206 (77.6 bits), Expect = 7.2e-15, P = 7.2e-15
Identities = 53/171 (30%), Positives = 86/171 (50%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKND-ESRGFAIIVFNTPAEAKKARVEM 95
+ + L N F K+G + D + R+++ + RGF I F P+ K +E
Sbjct: 21 IFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKV-IE- 78
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
+ H+I K V E+K G + K K K+FV + TV E+ELK F K+G
Sbjct: 79 DTHVINGKQV-----EIKRTIPKGAGGNQSKDIKTKKIFVGGIPSTVTEDELKDFFAKYG 133
Query: 156 NIIEVKIVRD-ENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSL 205
N++E +++RD E +S+GFGF+ F S + ++ + + G MI T V +
Sbjct: 134 NVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSK--GNMIDMADTQVEI 182
Score = 136 (52.9 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 46/198 (23%), Positives = 85/198 (42%)
Query: 132 KVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAIIE 190
K+F+ L + HF K+G I + I+RD + G+ +GFGFI F +K I +
Sbjct: 20 KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIED 79
Query: 191 ---MNGRMIQHNSTFVSLAEIXXXXXXXXXXXXXLLQPARKNKIFVANLPSNINNSEFEE 247
+NG+ ++ T A + + KIFV +PS + E ++
Sbjct: 80 THVINGKQVEIKRTIPKGA------------GGNQSKDIKTKKIFVGGIPSTVTEDELKD 127
Query: 248 LFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGT 301
FA++G + ++ D + GF+ F + +S G++ +V +
Sbjct: 128 FFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLS--KGNMIDMADTQVEIKKA 185
Query: 302 KPGVSITNPTKAPKKPAY 319
+P S+ ++P P+Y
Sbjct: 186 EPKKSLN---RSP--PSY 198
>UNIPROTKB|E5RGH3 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00983093
ProteinModelPortal:E5RGH3 SMR:E5RGH3 Ensembl:ENST00000518196
ArrayExpress:E5RGH3 Bgee:E5RGH3 Uniprot:E5RGH3
Length = 108
Score = 190 (71.9 bits), Expect = 8.1e-15, P = 8.1e-15
Identities = 45/113 (39%), Positives = 66/113 (58%)
Query: 74 SRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKV 133
S G+A + F PA+A++A MN +I KPV I + + P R VG +
Sbjct: 6 SLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVG---------NI 56
Query: 134 FVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEK 186
F+KNL +++D + L F FGNI+ K+V DENG SKG+GF+ F + +AAE+
Sbjct: 57 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAER 108
>UNIPROTKB|F1RZE1 [details] [associations]
symbol:RBM45 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 OMA:DIWVVKD GeneTree:ENSGT00680000100059
EMBL:CU856244 Ensembl:ENSSSCT00000017417 Uniprot:F1RZE1
Length = 476
Score = 153 (58.9 bits), Expect = 1.1e-14, Sum P(2) = 1.1e-14
Identities = 40/146 (27%), Positives = 81/146 (55%)
Query: 49 QALINE-FKKFGTLRDVRVARNKND-ESRGFAIIVFNTPAEAKKARVEMNGHLIG---SK 103
++++ E F FG ++D+ V R+K+ ES+G A + F ++A +A EM+G + +K
Sbjct: 38 ESVLRERFSPFGEIQDIWVVRDKHTKESKGIAFVKFARSSQACRAMEEMHGQCLSPNDTK 97
Query: 104 PVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIV 163
P+ + + + + V EE ++FV + ++ EE+L+ F +G+I I+
Sbjct: 98 PIKVFIAQSRSSGSHRDVEDEELT----RIFVM-IPKSYTEEDLREKFKVYGDIEYCSII 152
Query: 164 RDE-NGKSKGFGFIQFFSYKAAEKAI 188
+++ G+SKG G++++ A +AI
Sbjct: 153 KNKVTGESKGLGYVRYLKPSQAAQAI 178
Score = 130 (50.8 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 37/145 (25%), Positives = 66/145 (45%)
Query: 144 EEELKSHFIKFGNIIEVKIVRDENGK-SKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTF 202
E L+ F FG I ++ +VRD++ K SKG F++F A +A+ EM+G+ + N T
Sbjct: 38 ESVLRERFSPFGEIQDIWVVRDKHTKESKGIAFVKFARSSQACRAMEEMHGQCLSPNDTK 97
Query: 203 VSLAEIXXXXXXXXXXXXXLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
I ++ +IFV +P + + E F +G I S++
Sbjct: 98 PIKVFIAQSRSSGSHRD---VEDEELTRIFVM-IPKSYTEEDLREKFKVYGDIEYCSIIK 153
Query: 263 DK------HIGFIEFIMPKHATHAV 281
+K +G++ ++ P A A+
Sbjct: 154 NKVTGESKGLGYVRYLKPSQAAQAI 178
Score = 102 (41.0 bits), Expect = 1.1e-14, Sum P(2) = 1.1e-14
Identities = 21/72 (29%), Positives = 39/72 (54%)
Query: 228 KNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKHIGFIEFIMPKHATHAVSTMNGH 287
K ++F+ P + E++F RFG + LVS K++G+ ++ A A++T++G
Sbjct: 391 KERLFIVFNPHPLPLDVLEDIFCRFGNLIEVYLVSGKNVGYAKYADRISANDAITTLHGK 450
Query: 288 VFKSKPLKVTLS 299
+ LKV L+
Sbjct: 451 ILNGVRLKVMLA 462
>UNIPROTKB|F1PYP3 [details] [associations]
symbol:RBM45 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OMA:DIWVVKD
GeneTree:ENSGT00680000100059 EMBL:AAEX03017810
Ensembl:ENSCAFT00000021639 Uniprot:F1PYP3
Length = 480
Score = 153 (58.9 bits), Expect = 1.2e-14, Sum P(2) = 1.2e-14
Identities = 40/146 (27%), Positives = 81/146 (55%)
Query: 49 QALINE-FKKFGTLRDVRVARNKND-ESRGFAIIVFNTPAEAKKARVEMNGHLIG---SK 103
++++ E F FG ++D+ V R+K+ ES+G A + F ++A +A EM+G + +K
Sbjct: 38 ESVLRERFSPFGEIQDIWVVRDKHTKESKGIAFVKFARSSQACRAMEEMHGQCLSPNDTK 97
Query: 104 PVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIV 163
P+ + + + + V EE ++FV + ++ EE+L+ F +G+I I+
Sbjct: 98 PIKVFIAQSRSSGSHRDVEDEELT----RIFVM-IPKSYTEEDLREKFKVYGDIEYCSII 152
Query: 164 RDE-NGKSKGFGFIQFFSYKAAEKAI 188
+++ G+SKG G++++ A +AI
Sbjct: 153 KNKVTGESKGLGYVRYLKPSQAAQAI 178
Score = 130 (50.8 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 37/145 (25%), Positives = 66/145 (45%)
Query: 144 EEELKSHFIKFGNIIEVKIVRDENGK-SKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTF 202
E L+ F FG I ++ +VRD++ K SKG F++F A +A+ EM+G+ + N T
Sbjct: 38 ESVLRERFSPFGEIQDIWVVRDKHTKESKGIAFVKFARSSQACRAMEEMHGQCLSPNDTK 97
Query: 203 VSLAEIXXXXXXXXXXXXXLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
I ++ +IFV +P + + E F +G I S++
Sbjct: 98 PIKVFIAQSRSSGSHRD---VEDEELTRIFVM-IPKSYTEEDLREKFKVYGDIEYCSIIK 153
Query: 263 DK------HIGFIEFIMPKHATHAV 281
+K +G++ ++ P A A+
Sbjct: 154 NKVTGESKGLGYVRYLKPSQAAQAI 178
Score = 102 (41.0 bits), Expect = 1.2e-14, Sum P(2) = 1.2e-14
Identities = 21/72 (29%), Positives = 39/72 (54%)
Query: 228 KNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKHIGFIEFIMPKHATHAVSTMNGH 287
K ++F+ P + E++F RFG + LVS K++G+ ++ A A++T++G
Sbjct: 395 KERLFIVFNPHPLPLDVLEDIFCRFGNLIEVYLVSGKNVGYAKYADRISANDAITTLHGK 454
Query: 288 VFKSKPLKVTLS 299
+ LKV L+
Sbjct: 455 ILNGVRLKVMLA 466
>FB|FBgn0005649 [details] [associations]
symbol:Rox8 "Rox8" species:7227 "Drosophila melanogaster"
[GO:0008143 "poly(A) RNA binding" evidence=NAS] [GO:0003729 "mRNA
binding" evidence=ISS;NAS] [GO:0005685 "U1 snRNP" evidence=ISS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IC]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000398
GO:GO:0000381 HSSP:P11940 GO:GO:0005685
GeneTree:ENSGT00680000099967 KO:K13201 OMA:EEVYNQS
FlyBase:FBgn0005649 EMBL:BT050464 RefSeq:NP_732945.1
UniGene:Dm.6352 SMR:Q8IMX4 IntAct:Q8IMX4 MINT:MINT-303158
STRING:Q8IMX4 EnsemblMetazoa:FBtr0084591 EnsemblMetazoa:FBtr0333200
EnsemblMetazoa:FBtr0333201 EnsemblMetazoa:FBtr0333202 GeneID:42848
KEGG:dme:Dmel_CG5422 UCSC:CG5422-RD CTD:42848 InParanoid:Q8IMX4
GenomeRNAi:42848 NextBio:830893 Uniprot:Q8IMX4
Length = 470
Score = 174 (66.3 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
Identities = 50/165 (30%), Positives = 76/165 (46%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L+V NL+ SV LI F G ++ ++ R ++ +A I ++ A A MN
Sbjct: 9 LYVGNLDSSVSEDLLIALFSTMGPVKSCKIIREPGNDP--YAFIEYSNYQAATTALTAMN 66
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
L K + + + PG + P+ +FV +L ++ E L+ F FG
Sbjct: 67 KRLFLEKEIKVNWAT-SPGNQ-----PKTDISSHHHIFVGDLSPEIETETLREAFAPFGE 120
Query: 157 IIEVKIVRDENG-KSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNS 200
I +IVRD + KSKG+ F+ F AE AI MNG+ I S
Sbjct: 121 ISNCRIVRDPHTMKSKGYAFVSFVKKAEAENAIQAMNGQWIGSRS 165
Score = 147 (56.8 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 51/185 (27%), Positives = 79/185 (42%)
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
+E Q K ++V NL +V E+ L + F G + KI+R E G + FI++ +Y+A
Sbjct: 2 DESQPKT--LYVGNLDSSVSEDLLIALFSTMGPVKSCKIIR-EPGNDP-YAFIEYSNYQA 57
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXXXXXXXXLLQPARKNKIFVANLPSNINNS 243
A A+ MN R+ V+ A + IFV +L I
Sbjct: 58 ATTALTAMNKRLFLEKEIKVNWATSPGNQPKTDISSH--------HHIFVGDLSPEIETE 109
Query: 244 EFEELFARFGTITSSSLVSDKHI------GFIEFIMPKHATHAVSTMNGHVFKSKPLKVT 297
E FA FG I++ +V D H F+ F+ A +A+ MNG S+ ++
Sbjct: 110 TLREAFAPFGEISNCRIVRDPHTMKSKGYAFVSFVKKAEAENAIQAMNGQWIGSRSIRTN 169
Query: 298 LSGTK 302
S K
Sbjct: 170 WSTRK 174
Score = 111 (44.1 bits), Expect = 7.7e-08, Sum P(2) = 7.7e-08
Identities = 23/70 (32%), Positives = 40/70 (57%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKND-ESRGFAIIVFNTPAEAKKARVEM 95
+ V +L P ++ + L F FG + + R+ R+ + +S+G+A + F AEA+ A M
Sbjct: 97 IFVGDLSPEIETETLREAFAPFGEISNCRIVRDPHTMKSKGYAFVSFVKKAEAENAIQAM 156
Query: 96 NGHLIGSKPV 105
NG IGS+ +
Sbjct: 157 NGQWIGSRSI 166
Score = 83 (34.3 bits), Expect = 7.7e-08, Sum P(2) = 7.7e-08
Identities = 18/58 (31%), Positives = 33/58 (56%)
Query: 142 VDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHN 199
+ ++ + HF++FG I +V++ +D KGF FI+F + +AA AI + + N
Sbjct: 233 ISDDLMHKHFVQFGPIQDVRVFKD-----KGFSFIKFVTKEAAAHAIEHTHNSEVHGN 285
Score = 76 (31.8 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
Identities = 17/60 (28%), Positives = 29/60 (48%)
Query: 231 IFVANLPSNINNSEF-EELFARFGTITSSSLVSDKHIGFIEFIMPKHATHAVS-TMNGHV 288
++ P N+ + + + F +FG I + DK FI+F+ + A HA+ T N V
Sbjct: 223 VYCGGFPPNVISDDLMHKHFVQFGPIQDVRVFKDKGFSFIKFVTKEAAAHAIEHTHNSEV 282
>TAIR|locus:2079874 [details] [associations]
symbol:CP33 "chloroplast RNA-binding protein 33"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009579
"thylakoid" evidence=IDA] [GO:0009507 "chloroplast" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=RCA] [GO:0010027
"thylakoid membrane organization" evidence=RCA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA] [GO:0016226 "iron-sulfur cluster assembly"
evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
process, mevalonate-independent pathway" evidence=RCA] [GO:0048481
"ovule development" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009570 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0009579 HSSP:P19339
eggNOG:COG0724 HOGENOM:HOG000276232 EMBL:AL050300 UniGene:At.65006
UniGene:At.71002 EMBL:AY039607 EMBL:AY078022 EMBL:AY085279
EMBL:D31714 IPI:IPI00543679 PIR:S53494 RefSeq:NP_190806.1
ProteinModelPortal:Q39061 SMR:Q39061 STRING:Q39061 PaxDb:Q39061
PRIDE:Q39061 EnsemblPlants:AT3G52380.1 GeneID:824403
KEGG:ath:AT3G52380 TAIR:At3g52380 InParanoid:Q39061 OMA:FISFESA
PhylomeDB:Q39061 ProtClustDB:CLSN2684767 Genevestigator:Q39061
Uniprot:Q39061
Length = 329
Score = 200 (75.5 bits), Expect = 2.9e-14, P = 2.9e-14
Identities = 59/208 (28%), Positives = 98/208 (47%)
Query: 8 LEASWDEGISDDEGARSXXXXXXXXXXXXLHVNNLEPSVDNQALINEFKKFGTLRDVRVA 67
+E DEG ++E L+V NL ++ + L F + GT+ DV++
Sbjct: 91 VEEEGDEG--EEEVEEEKQTTQASGEEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIV 148
Query: 68 RNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPG-----QRSKPV 121
+K D SRGF + + EAK+A N IG + V + F E+ G R+K +
Sbjct: 149 YDKVTDRSRGFGFVTMGSIEEAKEAMQMFNSSQIGGRTVKVNFPEVPRGGENEVMRTK-I 207
Query: 122 GPEEKQY--KKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDEN-GKSKGFGFIQF 178
+ Y KV+ NL + + LK F ++ K++ + N G+S+GFGFI F
Sbjct: 208 RDNNRSYVDSPHKVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISF 267
Query: 179 FSYKAAEKAIIEMNGRMIQHNSTFVSLA 206
S + + A+ MNG ++ + ++LA
Sbjct: 268 ESAENVQSALATMNGVEVEGRALRLNLA 295
Score = 144 (55.7 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 46/205 (22%), Positives = 97/205 (47%)
Query: 124 EEKQY-----KKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQ 177
EEKQ ++ +++V NL T+ EL F + G +++V+IV D+ +S+GFGF+
Sbjct: 104 EEKQTTQASGEEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVT 163
Query: 178 FFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXXXXXXXXLLQPARK-----NKIF 232
S + A++A+ N I + V+ E+ + R +K++
Sbjct: 164 MGSIEEAKEAMQMFNSSQIGGRTVKVNFPEVPRGGENEVMRTK-IRDNNRSYVDSPHKVY 222
Query: 233 VANLPSNINNSEFEELFARFGTITSSSLVSDKH------IGFIEFIMPKHATHAVSTMNG 286
NL N+ + ++ F + + ++ +++ GFI F ++ A++TMNG
Sbjct: 223 AGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNG 282
Query: 287 HVFKSKPLKVTLSGTKPGVSITNPT 311
+ + L++ L+ + +++ P+
Sbjct: 283 VEVEGRALRLNLASEREKPTVSPPS 307
>UNIPROTKB|Q800W4 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0042036 "negative regulation of cytokine biosynthetic process"
evidence=IEA] [GO:0048024 "regulation of mRNA splicing, via
spliceosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
HSSP:P11940 GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748
KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 OMA:TSAPWMG
UniGene:Gga.12064 UniGene:Gga.8269 EMBL:AADN02059907
EMBL:AADN02059908 EMBL:AADN02059909 EMBL:AY189903 IPI:IPI00577572
RefSeq:NP_001244132.1 SMR:Q800W4 STRING:Q800W4
Ensembl:ENSGALT00000022506 GeneID:771327 KEGG:gga:771327
InParanoid:Q800W4 NextBio:20921528 Uniprot:Q800W4
Length = 372
Score = 201 (75.8 bits), Expect = 3.8e-14, P = 3.8e-14
Identities = 69/271 (25%), Positives = 115/271 (42%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK--NDESRGFAIIVFNTPAEAKKARVE 94
L+V NL V ++ F + G ++ ++ + ND + + F A A
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP---YCFVEFYEHRHAASALAA 65
Query: 95 MNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKF 154
MNG I K E+K + P ++ VFV +L + E++K+ F F
Sbjct: 66 MNGRKIMGK-------EVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPF 118
Query: 155 GNIIEVKIVRD-ENGKSKGFGFIQFFSYKAAEKAIIEMNG-----RMIQHN-STFVSLA- 206
G I + ++V+D GKSKG+GF+ FF+ AE AI +M G R I+ N +T A
Sbjct: 119 GRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAP 178
Query: 207 -EIXXXXXXXXXXXXXLLQPARKN-KIFVANLPSNINNSEFEELFARFGTITSSSLVSDK 264
+ Q + N ++ + S + + F+ FG I + DK
Sbjct: 179 KSTYESNTKQLSYDDVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDK 238
Query: 265 HIGFIEFIMPKHATHAVSTMNGHVFKSKPLK 295
F+ F + A HA+ ++NG + +K
Sbjct: 239 GYSFVRFNSHESAAHAIVSVNGTTIEGHVVK 269
Score = 132 (51.5 bits), Expect = 5.7e-06, P = 5.7e-06
Identities = 47/199 (23%), Positives = 79/199 (39%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMN 192
++V NL V E + F + G K++ D G + F++F+ ++ A A+ MN
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFYEHRHAASALAAMN 67
Query: 193 GRMIQHNSTFVSLAEIXXXXXXXXXXXXXLLQPARKNKIFVANLPSNINNSEFEELFARF 252
GR I V+ A +FV +L I + + FA F
Sbjct: 68 GRKIMGKEVKVNWATTPSSQKKDTSNHFH---------VFVGDLSPEITTEDIKAAFAPF 118
Query: 253 GTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKPGVS 306
G I+ + +V D K GF+ F A +A+ M G + ++ + KP
Sbjct: 119 GRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAP 178
Query: 307 ITNPTKAPKKPAYIDEVKN 325
+ K+ +Y D+V N
Sbjct: 179 KSTYESNTKQLSY-DDVVN 196
>TAIR|locus:2122009 [details] [associations]
symbol:RBP31 "AT4G24770" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA;TAS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0045087 "innate
immune response" evidence=IDA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0009451 "RNA modification" evidence=IMP]
[GO:0009073 "aromatic amino acid family biosynthetic process"
evidence=RCA] [GO:0009965 "leaf morphogenesis" evidence=RCA]
[GO:0016226 "iron-sulfur cluster assembly" evidence=RCA]
[GO:0030154 "cell differentiation" evidence=RCA] [GO:0045036
"protein targeting to chloroplast" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0009631 "cold acclimation" evidence=IMP] [GO:0016553 "base
conversion or substitution editing" evidence=IMP] [GO:0043489 "RNA
stabilization" evidence=IMP] [GO:0006396 "RNA processing"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009570 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0008266 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 GO:GO:0009631
GO:GO:0016553 GO:GO:0006396 GO:GO:0030529 EMBL:AL035356
EMBL:AL161562 GO:GO:0009535 eggNOG:COG0724 HOGENOM:HOG000276232
EMBL:M94554 EMBL:X65255 EMBL:U08467 EMBL:D31712 EMBL:D31713
IPI:IPI00523699 IPI:IPI00542634 IPI:IPI00760320 PIR:S28057
PIR:S53492 RefSeq:NP_194208.1 UniGene:At.38112 UniGene:At.70990
ProteinModelPortal:Q04836 SMR:Q04836 STRING:Q04836 PaxDb:Q04836
PRIDE:Q04836 ProMEX:Q04836 EnsemblPlants:AT4G24770.1 GeneID:828579
KEGG:ath:AT4G24770 GeneFarm:4009 TAIR:At4g24770 InParanoid:Q04836
OMA:NRYDLNG PhylomeDB:Q04836 ProtClustDB:CLSN2915857
Genevestigator:Q04836 GermOnline:AT4G24770 GO:GO:0043489
Uniprot:Q04836
Length = 329
Score = 199 (75.1 bits), Expect = 4.1e-14, P = 4.1e-14
Identities = 60/208 (28%), Positives = 102/208 (49%)
Query: 3 SKGKILEASWDEGISDDEGARSXXXXXXX-XXXXXLHVNNLEPSVDNQALINEFKKFGTL 61
S+G + E EG EGA S L V NL V++QAL F++ GT+
Sbjct: 118 SEGDVSEGDESEG-DVSEGAVSERAEFPEPSEEAKLFVGNLAYDVNSQALAMLFEQAGTV 176
Query: 62 RDVRVARNKN-DESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKP 120
V N+ D+SRGF + ++ EA+ A + N + + + ++T + P + S+P
Sbjct: 177 EIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGR--LLTVNKAAP-RGSRP 233
Query: 121 VGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRD-ENGKSKGFGFIQFF 179
+V+V NL VD L+ F + G ++E ++V D E G+S+GFGF+
Sbjct: 234 ERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMS 293
Query: 180 SYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
+AI ++G+ ++ + V++AE
Sbjct: 294 DVDELNEAISALDGQNLEGRAIRVNVAE 321
Score = 147 (56.8 bits), Expect = 8.2e-08, P = 8.2e-08
Identities = 44/188 (23%), Positives = 87/188 (46%)
Query: 123 PEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRD-ENGKSKGFGFIQFFSY 181
PE + + K+FV NL V+ + L F + G + +++ + E +S+GFGF+ S
Sbjct: 144 PEPSE--EAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSV 201
Query: 182 KAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXXXXXXXXLLQPARKNKIFVANLPSNIN 241
AE A+ + N + V+ A + +PA + ++V NLP +++
Sbjct: 202 DEAETAVEKFNRYDLNGRLLTVNKA---APRGSRPERAPRVYEPAFR--VYVGNLPWDVD 256
Query: 242 NSEFEELFARFGTITSSSLVSDKH------IGFIEFIMPKHATHAVSTMNGHVFKSKPLK 295
N E+LF+ G + + +V D+ GF+ A+S ++G + + ++
Sbjct: 257 NGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIR 316
Query: 296 VTLSGTKP 303
V ++ +P
Sbjct: 317 VNVAEERP 324
>UNIPROTKB|D4A964 [details] [associations]
symbol:Tial1 "Protein Tial1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1595845 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00949247 Ensembl:ENSRNOT00000066938 Uniprot:D4A964
Length = 368
Score = 199 (75.1 bits), Expect = 6.7e-14, P = 6.7e-14
Identities = 72/285 (25%), Positives = 121/285 (42%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESR-----GFAII--VFNTP---- 85
L+V NL V ++ F + G + ++ + D R GF+++ N P
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 70
Query: 86 -----AEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVE 140
+A A MNG I K E+K + P ++ VFV +L
Sbjct: 71 EFYEHRDAAAALAAMNGRKILGK-------EVKVNWATTPSSQKKDTSNHFHVFVGDLSP 123
Query: 141 TVDEEELKSHFIKFGNIIEVKIVRD-ENGKSKGFGFIQFFSYKAAEKAIIEMNG-----R 194
+ E++KS F FG I + ++V+D GKSKG+GF+ F++ AE AI+ M G R
Sbjct: 124 EITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGR 183
Query: 195 MIQHN-STFVSLA--EIXXXXXXXXXXXXXLLQPARKN-KIFVANLPSNINNSEFEELFA 250
I+ N +T A + Q + KN ++ + S + + + F+
Sbjct: 184 QIRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFS 243
Query: 251 RFGTITSSSLVSDKHIGFIEFIMPKHATHAVSTMNGHVFKSKPLK 295
FG I + +K F+ F + A HA+ ++NG + +K
Sbjct: 244 PFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVK 288
>UNIPROTKB|F1LQ36 [details] [associations]
symbol:Tial1 "Protein Tial1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1595845 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
GO:GO:0017145 GeneTree:ENSGT00680000099967 IPI:IPI00555194
Ensembl:ENSRNOT00000027463 Uniprot:F1LQ36
Length = 371
Score = 199 (75.1 bits), Expect = 6.9e-14, P = 6.9e-14
Identities = 72/285 (25%), Positives = 121/285 (42%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESR-----GFAII--VFNTP---- 85
L+V NL V ++ F + G + ++ + D R GF+++ N P
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 70
Query: 86 -----AEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVE 140
+A A MNG I K E+K + P ++ VFV +L
Sbjct: 71 EFYEHRDAAAALAAMNGRKILGK-------EVKVNWATTPSSQKKDTSNHFHVFVGDLSP 123
Query: 141 TVDEEELKSHFIKFGNIIEVKIVRD-ENGKSKGFGFIQFFSYKAAEKAIIEMNG-----R 194
+ E++KS F FG I + ++V+D GKSKG+GF+ F++ AE AI+ M G R
Sbjct: 124 EITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGR 183
Query: 195 MIQHN-STFVSLA--EIXXXXXXXXXXXXXLLQPARKN-KIFVANLPSNINNSEFEELFA 250
I+ N +T A + Q + KN ++ + S + + + F+
Sbjct: 184 QIRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFS 243
Query: 251 RFGTITSSSLVSDKHIGFIEFIMPKHATHAVSTMNGHVFKSKPLK 295
FG I + +K F+ F + A HA+ ++NG + +K
Sbjct: 244 PFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVK 288
>FB|FBgn0035526 [details] [associations]
symbol:CG1316 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE014296 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 HSSP:P11940 eggNOG:NOG145324
OMA:DIWVVKD GeneTree:ENSGT00680000100059 EMBL:BT001728
RefSeq:NP_647887.1 UniGene:Dm.14909 SMR:Q9VZE4 IntAct:Q9VZE4
MINT:MINT-906283 EnsemblMetazoa:FBtr0073233 GeneID:38526
KEGG:dme:Dmel_CG1316 UCSC:CG1316-RA FlyBase:FBgn0035526
InParanoid:Q9VZE4 OrthoDB:EOG4KKWJ8 GenomeRNAi:38526 NextBio:809099
Uniprot:Q9VZE4
Length = 470
Score = 175 (66.7 bits), Expect = 7.4e-14, Sum P(2) = 7.4e-14
Identities = 42/134 (31%), Positives = 77/134 (57%)
Query: 55 FKKFGTLRDVRVARNKN-DESRGFAIIVFNTPAEAKKARVEMNGHLIGSKP-VIITFVEL 112
F +G + D+ V ++K+ E++G A + F+ ++A KA+ EMNG IG + V
Sbjct: 47 FSPYGEIEDIWVVKDKHTQENKGIAYVKFSKTSDAAKAQEEMNGKTIGKMDRTLKVLVAA 106
Query: 113 KPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDEN-GKSK 171
Q S E+++Y + +F+ + +T EE+++ F ++G++ V IV+++N G K
Sbjct: 107 NRNQGSNKSENEQEKYVR--LFIV-IPKTATEEDIREEFSQWGDVESVTIVKEKNNGNPK 163
Query: 172 GFGFIQF--FSYKA 183
GFG+++F F Y A
Sbjct: 164 GFGYVRFTKFYYAA 177
Score = 68 (29.0 bits), Expect = 7.4e-14, Sum P(2) = 7.4e-14
Identities = 16/75 (21%), Positives = 40/75 (53%)
Query: 230 KIFVANLPSNINNSEFEELFARFGTITSSSLVSDKHIGFIEFIMPKHATHAVSTMNGHVF 289
++F+ L +N+ +S + +F+ + + L+ +K+ G++++ + A A+ T+NG
Sbjct: 383 RLFIV-LSANLPHSILKNIFSCWSGLIDVYLLPNKNCGYVKYAEVESAQLAIRTLNGAEI 441
Query: 290 KSKPLKVTLSGTKPG 304
+KV + + G
Sbjct: 442 CGTKIKVMEAEERSG 456
>MGI|MGI:107913 [details] [associations]
symbol:Tial1 "Tia1 cytotoxic granule-associated RNA binding
protein-like 1" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006915 "apoptotic process" evidence=IEA]
[GO:0007281 "germ cell development" evidence=IMP] [GO:0008284
"positive regulation of cell proliferation" evidence=IMP]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0017145 "stem cell
division" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:107913
GO:GO:0005634 GO:GO:0006915 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 CTD:7073 ChiTaRS:TIAL1
EMBL:U55861 IPI:IPI00108085 PIR:S72436 RefSeq:NP_033409.1
UniGene:Mm.242072 ProteinModelPortal:P70318 SMR:P70318
IntAct:P70318 STRING:P70318 PhosphoSite:P70318 PaxDb:P70318
PRIDE:P70318 Ensembl:ENSMUST00000106226 GeneID:21843 KEGG:mmu:21843
InParanoid:P70318 OMA:NGSKQLR NextBio:301310 Bgee:P70318
Genevestigator:P70318 GermOnline:ENSMUSG00000030846 Uniprot:P70318
Length = 392
Score = 199 (75.1 bits), Expect = 8.4e-14, P = 8.4e-14
Identities = 72/285 (25%), Positives = 121/285 (42%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESR-----GFAII--VFNTP---- 85
L+V NL V ++ F + G + ++ + D R GF+++ N P
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 70
Query: 86 -----AEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVE 140
+A A MNG I K E+K + P ++ VFV +L
Sbjct: 71 EFYEHRDAAAALAAMNGRKILGK-------EVKVNWATTPSSQKKDTSNHFHVFVGDLSP 123
Query: 141 TVDEEELKSHFIKFGNIIEVKIVRD-ENGKSKGFGFIQFFSYKAAEKAIIEMNG-----R 194
+ E++KS F FG I + ++V+D GKSKG+GF+ F++ AE AI+ M G R
Sbjct: 124 EITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGR 183
Query: 195 MIQHN-STFVSLA--EIXXXXXXXXXXXXXLLQPARKN-KIFVANLPSNINNSEFEELFA 250
I+ N +T A + Q + KN ++ + S + + + F+
Sbjct: 184 QIRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFS 243
Query: 251 RFGTITSSSLVSDKHIGFIEFIMPKHATHAVSTMNGHVFKSKPLK 295
FG I + +K F+ F + A HA+ ++NG + +K
Sbjct: 244 PFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVK 288
>RGD|1595845 [details] [associations]
symbol:Tial1 "Tia1 cytotoxic granule-associated RNA binding
protein-like 1" species:10116 "Rattus norvegicus" [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0007281 "germ cell development" evidence=ISO] [GO:0008284
"positive regulation of cell proliferation" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO] [GO:0017091
"AU-rich element binding" evidence=ISO] [GO:0017145 "stem cell
division" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1595845
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 EMBL:CH473956
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 CTD:7073 IPI:IPI00555194
EMBL:BC091409 RefSeq:NP_001013211.1 UniGene:Rn.162475 SMR:Q5BJN3
STRING:Q5BJN3 GeneID:361655 KEGG:rno:361655 UCSC:RGD:1595845
InParanoid:Q5BJN3 NextBio:677112 Genevestigator:Q5BJN3
Uniprot:Q5BJN3
Length = 392
Score = 199 (75.1 bits), Expect = 8.4e-14, P = 8.4e-14
Identities = 72/285 (25%), Positives = 121/285 (42%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESR-----GFAII--VFNTP---- 85
L+V NL V ++ F + G + ++ + D R GF+++ N P
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 70
Query: 86 -----AEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVE 140
+A A MNG I K E+K + P ++ VFV +L
Sbjct: 71 EFYEHRDAAAALAAMNGRKILGK-------EVKVNWATTPSSQKKDTSNHFHVFVGDLSP 123
Query: 141 TVDEEELKSHFIKFGNIIEVKIVRD-ENGKSKGFGFIQFFSYKAAEKAIIEMNG-----R 194
+ E++KS F FG I + ++V+D GKSKG+GF+ F++ AE AI+ M G R
Sbjct: 124 EITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGR 183
Query: 195 MIQHN-STFVSLA--EIXXXXXXXXXXXXXLLQPARKN-KIFVANLPSNINNSEFEELFA 250
I+ N +T A + Q + KN ++ + S + + + F+
Sbjct: 184 QIRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFS 243
Query: 251 RFGTITSSSLVSDKHIGFIEFIMPKHATHAVSTMNGHVFKSKPLK 295
FG I + +K F+ F + A HA+ ++NG + +K
Sbjct: 244 PFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVK 288
>WB|WBGene00001340 [details] [associations]
symbol:etr-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0010171
"body morphogenesis" evidence=IMP] [GO:0048477 "oogenesis"
evidence=IMP] [GO:0018991 "oviposition" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0040002 "collagen and
cuticulin-based cuticle development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] [GO:0061199 "striated muscle contraction involved in
embryonic body morphogenesis" evidence=IMP] [GO:0008340
"determination of adult lifespan" evidence=IMP] [GO:0005634
"nucleus" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008340
GO:GO:0009792 GO:GO:0018991 GO:GO:0006915 GO:GO:0002119
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0040011
GO:GO:0048477 GO:GO:0003676 GO:GO:0040002 KO:K13207
HOGENOM:HOG000004754 GeneTree:ENSGT00560000076837 EMBL:FO081419
UniGene:Cel.5079 GeneID:173401 KEGG:cel:CELE_T01D1.2
UCSC:T01D1.2a.1 CTD:173401 NextBio:879497 RefSeq:NP_001122631.1
ProteinModelPortal:A8DYS0 SMR:A8DYS0 IntAct:A8DYS0 STRING:A8DYS0
EnsemblMetazoa:T01D1.2f.1 EnsemblMetazoa:T01D1.2f.2
EnsemblMetazoa:T01D1.2f.3 EnsemblMetazoa:T01D1.2f.4
EnsemblMetazoa:T01D1.2f.5 EnsemblMetazoa:T01D1.2f.6
WormBase:T01D1.2f InParanoid:A8DYS0 ArrayExpress:A8DYS0
Uniprot:A8DYS0
Length = 588
Score = 144 (55.7 bits), Expect = 9.8e-14, Sum P(2) = 9.8e-14
Identities = 42/139 (30%), Positives = 73/139 (52%)
Query: 55 FKKFGTLRDVRVARNKNDE-SRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELK 113
F+K+G++ + R+K+ + S+G + F +K +E G L K +I +
Sbjct: 75 FEKYGSVFSCNILRDKSTQASKGCCFVTFYH----RKDAIEAQGALHNIK--VIEGMH-H 127
Query: 114 PGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGF 173
P Q KP E + +K +F+ L + +EE L+ F KFG+I + ++RD++GKS+G
Sbjct: 128 PVQM-KPADTENRNERK--LFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSRGC 184
Query: 174 GFIQFFSYKAAEKAIIEMN 192
F+ F + A A EM+
Sbjct: 185 AFVTFTNRSCAVVATKEMH 203
Score = 106 (42.4 bits), Expect = 9.8e-14, Sum P(2) = 9.8e-14
Identities = 27/74 (36%), Positives = 40/74 (54%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSDKH------IGFIEFIMPKHATHAVSTM 284
+F+ +LP + +S+ FA FG I S+ + DK GF+ + + AT+A+S M
Sbjct: 505 LFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAISAM 564
Query: 285 NGHVFKSKPLKVTL 298
NG SK LKV L
Sbjct: 565 NGFQIGSKRLKVQL 578
Score = 90 (36.7 bits), Expect = 4.0e-05, Sum P(2) = 4.0e-05
Identities = 21/65 (32%), Positives = 36/65 (55%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEM 191
+F+ +L + + +L + F FG I+ K+ D+ SK FGF+ + + ++A AI M
Sbjct: 505 LFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAISAM 564
Query: 192 NGRMI 196
NG I
Sbjct: 565 NGFQI 569
Score = 82 (33.9 bits), Expect = 6.6e-07, Sum P(2) = 6.6e-07
Identities = 26/88 (29%), Positives = 43/88 (48%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L + L + + L F KFG + D V R+++ +SRG A + F + A A EM+
Sbjct: 144 LFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSRGCAFVTFTNRSCAVVATKEMH 203
Query: 97 GH--LIG-SKPVIITFVELKPGQRSKPV 121
+ G S P+++ F + Q+ K V
Sbjct: 204 HSQTMEGCSAPLVVKFADT---QKDKDV 228
>UNIPROTKB|F1NY49 [details] [associations]
symbol:374274 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 OMA:EEVYNQS EMBL:AADN02030982
IPI:IPI00575679 Ensembl:ENSGALT00000015349 ArrayExpress:F1NY49
Uniprot:F1NY49
Length = 388
Score = 198 (74.8 bits), Expect = 1.1e-13, P = 1.1e-13
Identities = 72/285 (25%), Positives = 121/285 (42%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESR-----GFAII--VFNTP---- 85
L+V NL V ++ F + G + ++ + D R GF+++ N P
Sbjct: 10 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 69
Query: 86 -----AEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVE 140
+A A MNG I K E+K + P ++ VFV +L
Sbjct: 70 EFYEHRDAAAALAAMNGRKILGK-------EVKVNWATTPSSQKKDTSNHFHVFVGDLSP 122
Query: 141 TVDEEELKSHFIKFGNIIEVKIVRD-ENGKSKGFGFIQFFSYKAAEKAIIEMNG-----R 194
+ E++KS F FG I + ++V+D GKSKG+GF+ F++ AE AI+ M G R
Sbjct: 123 EITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGR 182
Query: 195 MIQHN-STFVSLA--EIXXXXXXXXXXXXXLLQPARKN-KIFVANLPSNINNSEFEELFA 250
I+ N +T A + Q + KN ++ + S + + + F+
Sbjct: 183 QIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFS 242
Query: 251 RFGTITSSSLVSDKHIGFIEFIMPKHATHAVSTMNGHVFKSKPLK 295
FG I + +K F+ F + A HA+ ++NG + +K
Sbjct: 243 PFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVK 287
>UNIPROTKB|F1NS94 [details] [associations]
symbol:374274 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 OMA:EEVYNQS EMBL:AADN02030982
IPI:IPI00681845 Ensembl:ENSGALT00000029737 ArrayExpress:F1NS94
Uniprot:F1NS94
Length = 389
Score = 198 (74.8 bits), Expect = 1.1e-13, P = 1.1e-13
Identities = 72/285 (25%), Positives = 121/285 (42%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESR-----GFAII--VFNTP---- 85
L+V NL V ++ F + G + ++ + D R GF+++ N P
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 70
Query: 86 -----AEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVE 140
+A A MNG I K E+K + P ++ VFV +L
Sbjct: 71 EFYEHRDAAAALAAMNGRKILGK-------EVKVNWATTPSSQKKDTSNHFHVFVGDLSP 123
Query: 141 TVDEEELKSHFIKFGNIIEVKIVRD-ENGKSKGFGFIQFFSYKAAEKAIIEMNG-----R 194
+ E++KS F FG I + ++V+D GKSKG+GF+ F++ AE AI+ M G R
Sbjct: 124 EITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGR 183
Query: 195 MIQHN-STFVSLA--EIXXXXXXXXXXXXXLLQPARKN-KIFVANLPSNINNSEFEELFA 250
I+ N +T A + Q + KN ++ + S + + + F+
Sbjct: 184 QIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFS 243
Query: 251 RFGTITSSSLVSDKHIGFIEFIMPKHATHAVSTMNGHVFKSKPLK 295
FG I + +K F+ F + A HA+ ++NG + +K
Sbjct: 244 PFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVK 288
>UNIPROTKB|E2RA41 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0017145 "stem cell division" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0008284 "positive
regulation of cell proliferation" evidence=IEA] [GO:0007281 "germ
cell development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:EEVYNQS
EMBL:AAEX03015584 EMBL:AAEX03015585 RefSeq:XP_852319.1
ProteinModelPortal:E2RA41 SMR:E2RA41 Ensembl:ENSCAFT00000019370
GeneID:477841 KEGG:cfa:477841 NextBio:20853261 Uniprot:E2RA41
Length = 392
Score = 198 (74.8 bits), Expect = 1.1e-13, P = 1.1e-13
Identities = 72/285 (25%), Positives = 121/285 (42%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESR-----GFAII--VFNTP---- 85
L+V NL V ++ F + G + ++ + D R GF+++ N P
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 70
Query: 86 -----AEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVE 140
+A A MNG I K E+K + P ++ VFV +L
Sbjct: 71 EFYEHRDAAAALAAMNGRKILGK-------EVKVNWATTPSSQKKDTSNHFHVFVGDLSP 123
Query: 141 TVDEEELKSHFIKFGNIIEVKIVRD-ENGKSKGFGFIQFFSYKAAEKAIIEMNG-----R 194
+ E++KS F FG I + ++V+D GKSKG+GF+ F++ AE AI+ M G R
Sbjct: 124 EITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGR 183
Query: 195 MIQHN-STFVSLA--EIXXXXXXXXXXXXXLLQPARKN-KIFVANLPSNINNSEFEELFA 250
I+ N +T A + Q + KN ++ + S + + + F+
Sbjct: 184 QIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFS 243
Query: 251 RFGTITSSSLVSDKHIGFIEFIMPKHATHAVSTMNGHVFKSKPLK 295
FG I + +K F+ F + A HA+ ++NG + +K
Sbjct: 244 PFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVK 288
>UNIPROTKB|F2Z5F9 [details] [associations]
symbol:LOC100736782 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:EEVYNQS
EMBL:CT826370 EMBL:CT867965 RefSeq:XP_003133244.1 UniGene:Ssc.56271
ProteinModelPortal:F2Z5F9 SMR:F2Z5F9 Ensembl:ENSSSCT00000011686
GeneID:100158186 KEGG:ssc:100158186 Uniprot:F2Z5F9
Length = 392
Score = 198 (74.8 bits), Expect = 1.1e-13, P = 1.1e-13
Identities = 72/285 (25%), Positives = 121/285 (42%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESR-----GFAII--VFNTP---- 85
L+V NL V ++ F + G + ++ + D R GF+++ N P
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 70
Query: 86 -----AEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVE 140
+A A MNG I K E+K + P ++ VFV +L
Sbjct: 71 EFYEHRDAAAALAAMNGRKILGK-------EVKVNWATTPSSQKKDTSNHFHVFVGDLSP 123
Query: 141 TVDEEELKSHFIKFGNIIEVKIVRD-ENGKSKGFGFIQFFSYKAAEKAIIEMNG-----R 194
+ E++KS F FG I + ++V+D GKSKG+GF+ F++ AE AI+ M G R
Sbjct: 124 EITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGR 183
Query: 195 MIQHN-STFVSLA--EIXXXXXXXXXXXXXLLQPARKN-KIFVANLPSNINNSEFEELFA 250
I+ N +T A + Q + KN ++ + S + + + F+
Sbjct: 184 QIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFS 243
Query: 251 RFGTITSSSLVSDKHIGFIEFIMPKHATHAVSTMNGHVFKSKPLK 295
FG I + +K F+ F + A HA+ ++NG + +K
Sbjct: 244 PFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVK 288
>TAIR|locus:2015403 [details] [associations]
symbol:RBP47C "RNA-binding protein 47C" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0034605 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494 EMBL:AC007519
eggNOG:COG0724 GO:GO:0008143 HSSP:Q14103 HOGENOM:HOG000186228
UniGene:At.22563 ProtClustDB:CLSN2681931 EMBL:AF344325
EMBL:AY035180 EMBL:AY062960 EMBL:BX813781 IPI:IPI00519360
IPI:IPI00543304 PIR:B96515 RefSeq:NP_175180.1 RefSeq:NP_973984.1
ProteinModelPortal:Q9SX79 SMR:Q9SX79 PRIDE:Q9SX79
EnsemblPlants:AT1G47490.1 GeneID:841157 KEGG:ath:AT1G47490
TAIR:At1g47490 InParanoid:Q9SX79 OMA:IWVGDLH PhylomeDB:Q9SX79
Genevestigator:Q9SX79 Uniprot:Q9SX79
Length = 432
Score = 199 (75.1 bits), Expect = 1.1e-13, P = 1.1e-13
Identities = 74/281 (26%), Positives = 125/281 (44%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRD---VRVARNKNDE-SRGFAIIVFNTPAEAKKARVE 94
V +L +D +A +N G R+ V+V RNKN+ S G+ + F + A K E
Sbjct: 105 VGDLHHWMD-EAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLRE 163
Query: 95 MNGHLIGS--KPVIITFVELKPGQ-RSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHF 151
NG + + +P + + G+ R + GP+ +FV +L V + L F
Sbjct: 164 FNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDLS------IFVGDLSPDVSDNLLHETF 217
Query: 152 I-KFGNIIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIX 209
K+ ++ K+V D N G+SKG+GF++F KA+ EMNG + + A
Sbjct: 218 SEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPR 277
Query: 210 XXXXXXXXXXX----XLLQPA---RKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS 262
L +P IFV L S++ + + ++ F FG I S +
Sbjct: 278 KTNGYQQQGGYMPNGTLTRPEGDIMNTTIFVGGLDSSVTDEDLKQPFNEFGEIVSVKIPV 337
Query: 263 DKHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKP 303
K GF++F+ +A A+ +NG V + ++++ G P
Sbjct: 338 GKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSW-GRNP 377
Score = 153 (58.9 bits), Expect = 3.0e-08, P = 3.0e-08
Identities = 51/171 (29%), Positives = 82/171 (47%)
Query: 37 LHVNNLEPSVDNQALINEF-KKFGTLRDVRVARNKND-ESRGFAIIVFNTPAEAKKARVE 94
+ V +L P V + L F +K+ +++ +V + N S+G+ + F E KA E
Sbjct: 199 IFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTE 258
Query: 95 MNGHLIGSKPVIITFVELKP--GQRSK----PVGP---EEKQYKKDKVFVKNLVETVDEE 145
MNG S+ + I + G + + P G E +FV L +V +E
Sbjct: 259 MNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPNGTLTRPEGDIMNTTIFVGGLDSSVTDE 318
Query: 146 ELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMI 196
+LK F +FG I+ VKI KG GF+QF + AE+A+ ++NG +I
Sbjct: 319 DLKQPFNEFGEIVSVKIP-----VGKGCGFVQFVNRPNAEEALEKLNGTVI 364
Score = 138 (53.6 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 44/174 (25%), Positives = 83/174 (47%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGN--IIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAII 189
++V +L +DE L S F I+ VK++R++N G S+G+GF++F S+ A+K +
Sbjct: 103 IWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLR 162
Query: 190 EMNGRMIQHNSTFVSLAEIXXXXXXXXXXXXXLLQPARKNKIFVANLPSNINNSEFEELF 249
E NG + + L L IFV +L +++++ E F
Sbjct: 163 EFNGTTMPNTDQPFRL-----NWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHETF 217
Query: 250 A-RFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
+ ++ ++ ++ +V D K GF+ F T A++ MNG S+ +++
Sbjct: 218 SEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRI 271
>ZFIN|ZDB-GENE-030131-2249 [details] [associations]
symbol:hnrnpa0a "heterogeneous nuclear
ribonucleoprotein A0a" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-2249
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000234442 OrthoDB:EOG4W6NX4
EMBL:BC066672 IPI:IPI00995382 RefSeq:NP_997810.1 UniGene:Dr.75559
ProteinModelPortal:Q6NYB0 SMR:Q6NYB0 STRING:Q6NYB0 PRIDE:Q6NYB0
GeneID:323529 KEGG:dre:323529 CTD:323529 InParanoid:Q6NYB0
NextBio:20808302 ArrayExpress:Q6NYB0 Bgee:Q6NYB0 Uniprot:Q6NYB0
Length = 305
Score = 194 (73.4 bits), Expect = 1.2e-13, P = 1.2e-13
Identities = 50/172 (29%), Positives = 85/172 (49%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKN-DESRGFAIIVFNTPAEAKKARVEM 95
L V L + L N F+++G L D V +N+ SR F + +++P EA A +
Sbjct: 12 LFVGGLNVQTTDDGLRNHFEQYGKLTDCVVVQNQQLKRSRCFGFVTYSSPDEADSA-MSA 70
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
H++ V ELK + G E K K+F+ L + ++E+ L+ F +FG
Sbjct: 71 RPHILDGNNV-----ELKRAVAREDAGKPEALAKVKKIFIGGLKDDIEEDHLRDCFSQFG 125
Query: 156 NIIEVKIVRD-ENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLA 206
+ + +++ D E GK +GFGF+ F +A+KA++ + MI + V A
Sbjct: 126 AVEKAEVITDKETGKKRGFGFVYFEDNDSADKAVV-LKFHMINGHKVEVKKA 176
Score = 126 (49.4 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 44/179 (24%), Positives = 83/179 (46%)
Query: 132 KVFVKNL-VETVDEEELKSHFIKFGNIIEVKIVRDENGK-SKGFGFIQFFSYKAAEKAII 189
K+FV L V+T D+ L++HF ++G + + +V+++ K S+ FGF+ + S A+ A+
Sbjct: 11 KLFVGGLNVQTTDDG-LRNHFEQYGKLTDCVVVQNQQLKRSRCFGFVTYSSPDEADSAM- 68
Query: 190 EMNGRMIQHNSTFVSLAEIXXXXXXXXXXXXXLLQPARKNKIFVANLPSNINNSEFEELF 249
++ N+ E+ L A+ KIF+ L +I + F
Sbjct: 69 SARPHILDGNNV-----ELKRAVAREDAGKPEAL--AKVKKIFIGGLKDDIEEDHLRDCF 121
Query: 250 ARFGTITSSSLVSDKH------IGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
++FG + + +++DK GF+ F A AV + H+ ++V + TK
Sbjct: 122 SQFGAVEKAEVITDKETGKKRGFGFVYFEDNDSADKAV-VLKFHMINGHKVEVKKALTK 179
>TAIR|locus:2150215 [details] [associations]
symbol:AT5G19350 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0010048 "vernalization response" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0034605 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
EMBL:AF296837 GO:GO:0010494 GO:GO:0008143 HSSP:Q14103 EMBL:AY074319
EMBL:AY114004 IPI:IPI00526390 IPI:IPI00846741 RefSeq:NP_001078604.1
RefSeq:NP_197436.1 UniGene:At.31302 ProteinModelPortal:Q8VXZ9
SMR:Q8VXZ9 PRIDE:Q8VXZ9 EnsemblPlants:AT5G19350.1 GeneID:832055
KEGG:ath:AT5G19350 TAIR:At5g19350 HOGENOM:HOG000186228
InParanoid:Q8VXZ9 OMA:NGTQMPG PhylomeDB:Q8VXZ9
ProtClustDB:CLSN2693583 Genevestigator:Q8VXZ9 Uniprot:Q8VXZ9
Length = 425
Score = 168 (64.2 bits), Expect = 5.5e-10, P = 5.5e-10
Identities = 50/208 (24%), Positives = 97/208 (46%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEM 191
+++ +L VDE L S F + G ++ VK++R++ G+ +G+GFI+F S+ AAE+ +
Sbjct: 26 LWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQTY 85
Query: 192 NGRMIQHNSTFVSLAEIXXXXXXXXXXXXXLLQPARKNKIFVANLPSNINNSEFEELF-A 250
NG Q T E+ + + IFV +L ++ + +E F
Sbjct: 86 NGT--QMPGT-----ELTFRLNWASFGSGQKVDAGPDHSIFVGDLAPDVTDYLLQETFRV 138
Query: 251 RFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKPG 304
+ ++ + +V+D K GF++F A++ MNG ++P++++ + K
Sbjct: 139 HYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAATPKKN 198
Query: 305 VSITNPTKAPKKPAYIDEVKNVIGIKVQ 332
V + + K Y V + + VQ
Sbjct: 199 VGVQQ--QYVTKAVYPVTVPSAVAAPVQ 224
Score = 149 (57.5 bits), Expect = 1.5e-13, Sum P(2) = 1.5e-13
Identities = 46/162 (28%), Positives = 80/162 (49%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L + +L+ VD L + F + G L V+V RNK + G+ I F + A A++
Sbjct: 26 LWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQTY 85
Query: 96 NG-HLIGSKPVI-ITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHF-I 152
NG + G++ + + GQ+ GP+ +FV +L V + L+ F +
Sbjct: 86 NGTQMPGTELTFRLNWASFGSGQKVD-AGPDHS------IFVGDLAPDVTDYLLQETFRV 138
Query: 153 KFGNIIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAIIEMNG 193
+ ++ K+V D + G+SKG+GF++F +A+ EMNG
Sbjct: 139 HYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNG 180
Score = 124 (48.7 bits), Expect = 5.7e-05, P = 5.7e-05
Identities = 34/101 (33%), Positives = 51/101 (50%)
Query: 104 PVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIV 163
PV + P Q V P E + V NL + V EEELK F + G +I VKI
Sbjct: 212 PVTVPSAVAAPVQAY--VAPPESDVTCTTISVANLDQNVTEEELKKAFSQLGEVIYVKIP 269
Query: 164 RDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVS 204
+KG+G++QF + +AE+A+ M G++I + +S
Sbjct: 270 A-----TKGYGYVQFKTRPSAEEAVQRMQGQVIGQQAVRIS 305
Score = 94 (38.1 bits), Expect = 1.5e-13, Sum P(2) = 1.5e-13
Identities = 21/74 (28%), Positives = 37/74 (50%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSDKHIGFIEFIMPKHATHAVSTMNGHVFK 290
I VANL N+ E ++ F++ G + + + K G+++F A AV M G V
Sbjct: 239 ISVANLDQNVTEEELKKAFSQLGEVIYVKIPATKGYGYVQFKTRPSAEEAVQRMQGQVIG 298
Query: 291 SKPLKVTLSGTKPG 304
+ ++++ S PG
Sbjct: 299 QQAVRISWS-KNPG 311
Score = 81 (33.6 bits), Expect = 7.8e-06, Sum P(2) = 7.8e-06
Identities = 26/100 (26%), Positives = 48/100 (48%)
Query: 37 LHVNNLEPSVDNQALINEFK-KFGTLRDVRVARNKND-ESRGFAIIVFNTPAEAKKARVE 94
+ V +L P V + L F+ + ++R +V + + S+G+ + F +E +A E
Sbjct: 118 IFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAE 177
Query: 95 MNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVF 134
MNG ++P+ I+ K K VG ++ QY V+
Sbjct: 178 MNGLYCSTRPMRISAATPK-----KNVGVQQ-QYVTKAVY 211
>UNIPROTKB|H0YAP2 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519622
Uniprot:H0YAP2
Length = 131
Score = 179 (68.1 bits), Expect = 1.5e-13, P = 1.5e-13
Identities = 41/120 (34%), Positives = 65/120 (54%)
Query: 144 EEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFV 203
+E LK F KFG + VK++ DE+GKSKGFGF+ F ++ A+KA+ EMNG+ + +V
Sbjct: 2 DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 61
Query: 204 SLAEIXXXXXXXXXXXXXLLQPARKNK-----IFVANLPSNINNSEFEELFARFGTITSS 258
A+ ++ R + ++V NL I++ + F+ FGTITS+
Sbjct: 62 GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSA 121
Score = 141 (54.7 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 36/122 (29%), Positives = 64/122 (52%)
Query: 48 NQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVII 107
++ L + F KFG V+V +++ +S+GF + F +A+KA EMNG + K + +
Sbjct: 2 DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 61
Query: 108 TFVELKPGQRSKPVGPEEKQYKKDKV--------FVKNLVETVDEEELKSHFIKFGNIIE 159
+ K +R + + +Q K+D++ +VKNL + +D+E L+ F FG I
Sbjct: 62 GRAQKKV-ERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITS 120
Query: 160 VK 161
K
Sbjct: 121 AK 122
>UNIPROTKB|E1C240 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AADN02057847
EMBL:AADN02057848 EMBL:AADN02057849 EMBL:AADN02057850
IPI:IPI00584568 ProteinModelPortal:E1C240
Ensembl:ENSGALT00000025475 Uniprot:E1C240
Length = 388
Score = 193 (73.0 bits), Expect = 4.5e-13, P = 4.5e-13
Identities = 54/176 (30%), Positives = 85/176 (48%)
Query: 118 SKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFI 176
S P+ + K + V L +++ +EELKS F G I K+VRD+ G+S G+GF+
Sbjct: 54 SSPIDSGNTEDSKTNLIVNYLPQSMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFV 113
Query: 177 QFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXXXXXXXXLLQPARKNKIFVANL 236
+ K AEKAI +NG +Q + VS A R ++V+ L
Sbjct: 114 NYVDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASI-------------RDANLYVSGL 160
Query: 237 PSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNG 286
P + E E+LF+++G I +S ++ D + +GFI F A A+ +NG
Sbjct: 161 PKTMTQKELEQLFSQYGRIITSRILVDQVTGMSRGVGFIRFDKRIEAEEAIKGLNG 216
Score = 158 (60.7 bits), Expect = 1.9e-13, Sum P(2) = 1.9e-13
Identities = 44/160 (27%), Positives = 82/160 (51%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L VN L S+ + L + F G + ++ R+K +S G+ + + P +A+KA +
Sbjct: 69 LIVNYLPQSMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPKDAEKAINTL 128
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
NG + +K + +++ P + ++V L +T+ ++EL+ F ++G
Sbjct: 129 NGLRLQTKTIKVSYAR-----------PSSASIRDANLYVSGLPKTMTQKELEQLFSQYG 177
Query: 156 NIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEMNGR 194
II +I+ D+ G S+G GFI+F AE+AI +NG+
Sbjct: 178 RIITSRILVDQVTGMSRGVGFIRFDKRIEAEEAIKGLNGQ 217
Score = 121 (47.7 bits), Expect = 0.00011, P = 0.00011
Identities = 27/62 (43%), Positives = 34/62 (54%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAIIEM 191
+FV NL DE L F FG + VK++RD N K KGFGF+ +Y A AI +
Sbjct: 307 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 366
Query: 192 NG 193
NG
Sbjct: 367 NG 368
Score = 81 (33.6 bits), Expect = 1.9e-13, Sum P(2) = 1.9e-13
Identities = 21/78 (26%), Positives = 38/78 (48%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTM 284
IFV NL + + S ++F FG +T+ ++ D K GF+ A A++++
Sbjct: 307 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 366
Query: 285 NGHVFKSKPLKVTLSGTK 302
NG+ + L+V+ K
Sbjct: 367 NGYRLGDRVLQVSFKTNK 384
>TAIR|locus:2160210 [details] [associations]
symbol:RBP45A "RNA-binding protein 45A" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 eggNOG:COG0724 EMBL:AB005232 GO:GO:0008143
HSSP:Q61474 HOGENOM:HOG000186228 EMBL:AF324983 EMBL:BT029545
IPI:IPI00522054 RefSeq:NP_568815.1 UniGene:At.19141
ProteinModelPortal:Q9FPJ8 SMR:Q9FPJ8 IntAct:Q9FPJ8 STRING:Q9FPJ8
PRIDE:Q9FPJ8 EnsemblPlants:AT5G54900.1 GeneID:835581
KEGG:ath:AT5G54900 TAIR:At5g54900 InParanoid:Q9FPJ8 OMA:EARTLWI
PhylomeDB:Q9FPJ8 ProtClustDB:CLSN2917762 Genevestigator:Q9FPJ8
Uniprot:Q9FPJ8
Length = 387
Score = 196 (74.1 bits), Expect = 1.9e-13, P = 1.9e-13
Identities = 64/279 (22%), Positives = 121/279 (43%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L + +L+ +D +++ F + G +V RNK +S G+ I F + + A++
Sbjct: 62 LWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVSHSVAERVLQTY 121
Query: 96 NGHLIGS--KPVIITFVELKPGQ-RSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFI 152
NG + S + + + + G+ R + GP+ +FV +L V + L F
Sbjct: 122 NGAPMPSTEQTFRLNWAQAGAGEKRFQTEGPDHT------IFVGDLAPEVTDYMLSDTFK 175
Query: 153 K-FGNIIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE--- 207
+G++ K+V D G+SKG+GF++F +A+ EMNG+ + A
Sbjct: 176 NVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNGQYCSTRPMRIGPAANKN 235
Query: 208 ---IXXXXXXXXXXXXXLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDK 264
+ IFV L +N+ + E + +F +FG + + K
Sbjct: 236 ALPMQPAMYQNTQGANAGDNDPNNTTIFVGGLDANVTDDELKSIFGQFGELLHVKIPPGK 295
Query: 265 HIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKP 303
GF+++ A HA+S +NG + ++++ G P
Sbjct: 296 RCGFVQYANKASAEHALSVLNGTQLGGQSIRLSW-GRSP 333
>ZFIN|ZDB-GENE-030131-2167 [details] [associations]
symbol:tia1l "cytotoxic granule-associated RNA
binding protein 1, like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-2167 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HSSP:P11940 GeneTree:ENSGT00680000099967 KO:K13201
OMA:PAYNTTV HOVERGEN:HBG105006 EMBL:BX088551 EMBL:BC045485
EMBL:BC066734 IPI:IPI00499030 RefSeq:NP_956476.1 UniGene:Dr.5585
SMR:Q7ZVM6 Ensembl:ENSDART00000003957 GeneID:323447 KEGG:dre:323447
CTD:323447 InParanoid:Q7ZVM6 NextBio:20808253 Uniprot:Q7ZVM6
Length = 342
Score = 194 (73.4 bits), Expect = 2.2e-13, P = 2.2e-13
Identities = 66/270 (24%), Positives = 114/270 (42%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L+V NL V ++ F + G + ++ + + + F A A MN
Sbjct: 11 LYVGNLSRDVTEALILQVFSQIGPCKSCKMILDTTGNDP-YCFVEFYENRHAAAALAAMN 69
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G I K ++K S P ++ VFV +L + +++++ F FG
Sbjct: 70 GRKILGK-------DMKVNWASTPSSQKKDTSNHFHVFVGDLSPEISTDDVRAAFAPFGK 122
Query: 157 IIEVKIVRD-ENGKSKGFGFIQFFSYKAAEKAIIEMNG-----RMIQHN-STFVSLAEIX 209
I + ++V+D GKSKG+GFI F + AE AI +MNG R I+ N +T A
Sbjct: 123 ISDARVVKDLATGKSKGYGFISFINKWDAESAIQQMNGQWLGGRQIRTNWATRKPSAPKS 182
Query: 210 XXXXXXXXXXXX---LLQPARKN-KIFVANLPSNINNSEFEELFARFGTITSSSLVSDKH 265
L Q + N ++ + S +++ + F+ FG I + +K
Sbjct: 183 NNEGASSKHLSYEEVLNQSSPSNCTVYCGGIASGLSDQLMRQTFSPFGQIMEIRVFPEKG 242
Query: 266 IGFIEFIMPKHATHAVSTMNGHVFKSKPLK 295
F+ F + A HA+ ++NG + +K
Sbjct: 243 YSFVRFDSHEGAAHAIVSVNGTCIEGHTVK 272
Score = 143 (55.4 bits), Expect = 2.6e-07, P = 2.6e-07
Identities = 51/199 (25%), Positives = 78/199 (39%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMN 192
++V NL V E + F + G K++ D G + F++F+ + A A+ MN
Sbjct: 11 LYVGNLSRDVTEALILQVFSQIGPCKSCKMILDTTGNDP-YCFVEFYENRHAAAALAAMN 69
Query: 193 GRMIQHNSTFVSLAEIXXXXXXXXXXXXXLLQPARKNKIFVANLPSNINNSEFEELFARF 252
GR I V+ A +FV +L I+ + FA F
Sbjct: 70 GRKILGKDMKVNWASTPSSQKKDTSNHFH---------VFVGDLSPEISTDDVRAAFAPF 120
Query: 253 GTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKPGVS 306
G I+ + +V D K GFI FI A A+ MNG + ++ + KP
Sbjct: 121 GKISDARVVKDLATGKSKGYGFISFINKWDAESAIQQMNGQWLGGRQIRTNWATRKPSAP 180
Query: 307 ITNPTKAPKKPAYIDEVKN 325
+N A K +EV N
Sbjct: 181 KSNNEGASSKHLSYEEVLN 199
>UNIPROTKB|D4A7H6 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00192584 ProteinModelPortal:D4A7H6
SMR:D4A7H6 Ensembl:ENSRNOT00000009035 ArrayExpress:D4A7H6
Uniprot:D4A7H6
Length = 346
Score = 194 (73.4 bits), Expect = 2.3e-13, P = 2.3e-13
Identities = 55/176 (31%), Positives = 84/176 (47%)
Query: 118 SKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFI 176
S PV + K + V L + + +EELKS F G I K+VRD+ G+S G+GF+
Sbjct: 26 SSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFV 85
Query: 177 QFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXXXXXXXXLLQPARKNKIFVANL 236
+ K AEKAI +NG +Q + VS A R ++V+ L
Sbjct: 86 NYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASI-------------RDANLYVSGL 132
Query: 237 PSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNG 286
P + E E+LF+++G I +S ++ D + +GFI F A A+ +NG
Sbjct: 133 PKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 153 (58.9 bits), Expect = 4.6e-13, Sum P(2) = 4.6e-13
Identities = 43/160 (26%), Positives = 82/160 (51%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L VN L ++ + L + F G + ++ R+K +S G+ + + P +A+KA +
Sbjct: 41 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 100
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
NG + +K + +++ P + ++V L +T+ ++EL+ F ++G
Sbjct: 101 NGLRLQTKTIKVSYAR-----------PSSASIRDANLYVSGLPKTMTQKELEQLFSQYG 149
Query: 156 NIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEMNGR 194
II +I+ D+ G S+G GFI+F AE+AI +NG+
Sbjct: 150 RIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 189
Score = 121 (47.7 bits), Expect = 8.6e-05, P = 8.6e-05
Identities = 27/62 (43%), Positives = 34/62 (54%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAIIEM 191
+FV NL DE L F FG + VK++RD N K KGFGF+ +Y A AI +
Sbjct: 265 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 324
Query: 192 NG 193
NG
Sbjct: 325 NG 326
Score = 118 (46.6 bits), Expect = 0.00019, P = 0.00019
Identities = 28/76 (36%), Positives = 40/76 (52%)
Query: 228 KNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDK------HIGFIEFIMPKHATHAV 281
K + V LP N+ E + LF G I S LV DK GF+ +I PK A A+
Sbjct: 38 KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 97
Query: 282 STMNGHVFKSKPLKVT 297
+T+NG ++K +KV+
Sbjct: 98 NTLNGLRLQTKTIKVS 113
Score = 81 (33.6 bits), Expect = 4.6e-13, Sum P(2) = 4.6e-13
Identities = 21/78 (26%), Positives = 38/78 (48%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTM 284
IFV NL + + S ++F FG +T+ ++ D K GF+ A A++++
Sbjct: 265 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 324
Query: 285 NGHVFKSKPLKVTLSGTK 302
NG+ + L+V+ K
Sbjct: 325 NGYRLGDRVLQVSFKTNK 342
>UNIPROTKB|Q12926 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0003730 "mRNA 3'-UTR binding"
evidence=TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0006355 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:CH471071 GO:GO:0003730 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
EMBL:U12431 EMBL:U29943 EMBL:AB209294 EMBL:AL161628 EMBL:AL445623
EMBL:BC030692 IPI:IPI00030250 IPI:IPI00219967 PIR:I38726 PIR:I39077
RefSeq:NP_001164666.1 RefSeq:NP_001164668.1 RefSeq:NP_004423.2
UniGene:Hs.166109 ProteinModelPortal:Q12926 SMR:Q12926
STRING:Q12926 PhosphoSite:Q12926 DMDM:93141258 PaxDb:Q12926
PRIDE:Q12926 DNASU:1993 Ensembl:ENST00000223951
Ensembl:ENST00000380110 Ensembl:ENST00000380117
Ensembl:ENST00000397312 Ensembl:ENST00000544538 GeneID:1993
KEGG:hsa:1993 UCSC:uc003zps.3 UCSC:uc003zpu.3 CTD:1993
GeneCards:GC09M023690 HGNC:HGNC:3313 HPA:CAB022222 MIM:601673
neXtProt:NX_Q12926 PharmGKB:PA27741 InParanoid:Q12926 KO:K13208
OrthoDB:EOG4JHCFV PhylomeDB:Q12926 GenomeRNAi:1993 NextBio:8059
ArrayExpress:Q12926 Bgee:Q12926 CleanEx:HS_ELAVL2
Genevestigator:Q12926 GermOnline:ENSG00000107105 Uniprot:Q12926
Length = 359
Score = 194 (73.4 bits), Expect = 2.6e-13, P = 2.6e-13
Identities = 55/176 (31%), Positives = 84/176 (47%)
Query: 118 SKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFI 176
S PV + K + V L + + +EELKS F G I K+VRD+ G+S G+GF+
Sbjct: 26 SSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFV 85
Query: 177 QFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXXXXXXXXLLQPARKNKIFVANL 236
+ K AEKAI +NG +Q + VS A R ++V+ L
Sbjct: 86 NYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASI-------------RDANLYVSGL 132
Query: 237 PSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNG 286
P + E E+LF+++G I +S ++ D + +GFI F A A+ +NG
Sbjct: 133 PKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 153 (58.9 bits), Expect = 5.5e-13, Sum P(2) = 5.5e-13
Identities = 43/160 (26%), Positives = 82/160 (51%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L VN L ++ + L + F G + ++ R+K +S G+ + + P +A+KA +
Sbjct: 41 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 100
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
NG + +K + +++ P + ++V L +T+ ++EL+ F ++G
Sbjct: 101 NGLRLQTKTIKVSYAR-----------PSSASIRDANLYVSGLPKTMTQKELEQLFSQYG 149
Query: 156 NIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEMNGR 194
II +I+ D+ G S+G GFI+F AE+AI +NG+
Sbjct: 150 RIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 189
Score = 121 (47.7 bits), Expect = 9.2e-05, P = 9.2e-05
Identities = 27/62 (43%), Positives = 34/62 (54%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAIIEM 191
+FV NL DE L F FG + VK++RD N K KGFGF+ +Y A AI +
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 192 NG 193
NG
Sbjct: 338 NG 339
Score = 118 (46.6 bits), Expect = 0.00020, P = 0.00020
Identities = 28/76 (36%), Positives = 40/76 (52%)
Query: 228 KNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDK------HIGFIEFIMPKHATHAV 281
K + V LP N+ E + LF G I S LV DK GF+ +I PK A A+
Sbjct: 38 KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 97
Query: 282 STMNGHVFKSKPLKVT 297
+T+NG ++K +KV+
Sbjct: 98 NTLNGLRLQTKTIKVS 113
Score = 81 (33.6 bits), Expect = 5.5e-13, Sum P(2) = 5.5e-13
Identities = 21/78 (26%), Positives = 38/78 (48%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTM 284
IFV NL + + S ++F FG +T+ ++ D K GF+ A A++++
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 285 NGHVFKSKPLKVTLSGTK 302
NG+ + L+V+ K
Sbjct: 338 NGYRLGDRVLQVSFKTNK 355
>MGI|MGI:1100887 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1100887 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 CTD:1993 KO:K13208 EMBL:U29088
IPI:IPI00121676 PIR:JC6057 RefSeq:NP_034616.1 UniGene:Mm.318042
ProteinModelPortal:Q60899 SMR:Q60899 STRING:Q60899
PhosphoSite:Q60899 PaxDb:Q60899 PRIDE:Q60899
Ensembl:ENSMUST00000008633 GeneID:15569 KEGG:mmu:15569
InParanoid:Q60899 NextBio:288546 Bgee:Q60899 Genevestigator:Q60899
GermOnline:ENSMUSG00000008489 Uniprot:Q60899
Length = 360
Score = 194 (73.4 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 55/176 (31%), Positives = 84/176 (47%)
Query: 118 SKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFI 176
S PV + K + V L + + +EELKS F G I K+VRD+ G+S G+GF+
Sbjct: 26 SSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFV 85
Query: 177 QFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXXXXXXXXLLQPARKNKIFVANL 236
+ K AEKAI +NG +Q + VS A R ++V+ L
Sbjct: 86 NYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASI-------------RDANLYVSGL 132
Query: 237 PSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNG 286
P + E E+LF+++G I +S ++ D + +GFI F A A+ +NG
Sbjct: 133 PKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 153 (58.9 bits), Expect = 5.6e-13, Sum P(2) = 5.6e-13
Identities = 43/160 (26%), Positives = 82/160 (51%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L VN L ++ + L + F G + ++ R+K +S G+ + + P +A+KA +
Sbjct: 41 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 100
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
NG + +K + +++ P + ++V L +T+ ++EL+ F ++G
Sbjct: 101 NGLRLQTKTIKVSYAR-----------PSSASIRDANLYVSGLPKTMTQKELEQLFSQYG 149
Query: 156 NIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEMNGR 194
II +I+ D+ G S+G GFI+F AE+AI +NG+
Sbjct: 150 RIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 189
Score = 121 (47.7 bits), Expect = 9.3e-05, P = 9.3e-05
Identities = 27/62 (43%), Positives = 34/62 (54%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAIIEM 191
+FV NL DE L F FG + VK++RD N K KGFGF+ +Y A AI +
Sbjct: 279 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 338
Query: 192 NG 193
NG
Sbjct: 339 NG 340
Score = 118 (46.6 bits), Expect = 0.00021, P = 0.00021
Identities = 28/76 (36%), Positives = 40/76 (52%)
Query: 228 KNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDK------HIGFIEFIMPKHATHAV 281
K + V LP N+ E + LF G I S LV DK GF+ +I PK A A+
Sbjct: 38 KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 97
Query: 282 STMNGHVFKSKPLKVT 297
+T+NG ++K +KV+
Sbjct: 98 NTLNGLRLQTKTIKVS 113
Score = 81 (33.6 bits), Expect = 5.6e-13, Sum P(2) = 5.6e-13
Identities = 21/78 (26%), Positives = 38/78 (48%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTM 284
IFV NL + + S ++F FG +T+ ++ D K GF+ A A++++
Sbjct: 279 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 338
Query: 285 NGHVFKSKPLKVTLSGTK 302
NG+ + L+V+ K
Sbjct: 339 NGYRLGDRVLQVSFKTNK 356
>FB|FBgn0010263 [details] [associations]
symbol:Rbp9 "RNA-binding protein 9" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0007293
"germarium-derived egg chamber formation" evidence=TAS] [GO:0005634
"nucleus" evidence=TAS] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0048477
"oogenesis" evidence=IMP] [GO:0036093 "germ cell proliferation"
evidence=IMP] [GO:0060856 "establishment of blood-brain barrier"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0007293 TIGRFAMs:TIGR01661
HSSP:P26378 GO:GO:0060856 FlyBase:FBgn0010263 EMBL:S55886
ProteinModelPortal:Q26293 SMR:Q26293 STRING:Q26293 PRIDE:Q26293
InParanoid:Q26293 ArrayExpress:Q26293 Bgee:Q26293 Uniprot:Q26293
Length = 444
Score = 196 (74.1 bits), Expect = 2.8e-13, P = 2.8e-13
Identities = 51/181 (28%), Positives = 91/181 (50%)
Query: 130 KDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAI 188
K + V L +T+ ++E++S F+ FG + K++RD+ G+S G+GF+ + + AEKAI
Sbjct: 109 KTNLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKAI 168
Query: 189 IEMNGRMIQHNSTFVSLAEIXXXXXXXXXXXXXLLQPARKNKIFVANLPSNINNSEFEEL 248
+NG +Q+ + VS+A + + ++V+ LP N+ S+ E L
Sbjct: 169 NALNGLRLQNKTIKVSIARPSS-------------ESIKGANLYVSGLPKNMTQSDLESL 215
Query: 249 FARFGTITSSSLVSD-----------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVT 297
F+ +G I +S ++ D K +GFI F A A+ +NG K+ +T
Sbjct: 216 FSPYGKIITSRILCDNITGEHAAGLSKGVGFIRFDQRFEADRAIKELNGTTPKNSTEPIT 275
Query: 298 L 298
+
Sbjct: 276 V 276
Score = 137 (53.3 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 47/172 (27%), Positives = 84/172 (48%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L VN L ++ + + F FG + ++ R+K +S G+ + + +A+KA +
Sbjct: 112 LIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKAINAL 171
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
NG + +K + ++ P + K ++V L + + + +L+S F +G
Sbjct: 172 NGLRLQNKTIKVSIAR-----------PSSESIKGANLYVSGLPKNMTQSDLESLFSPYG 220
Query: 156 NIIEVKIVRD----EN--GKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNST 201
II +I+ D E+ G SKG GFI+F A++AI E+NG + NST
Sbjct: 221 KIITSRILCDNITGEHAAGLSKGVGFIRFDQRFEADRAIKELNGTTPK-NST 271
Score = 113 (44.8 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
Identities = 25/62 (40%), Positives = 36/62 (58%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRD-ENGKSKGFGFIQFFSYKAAEKAIIEM 191
+FV NL +E L F FG + VK++RD ++ K KGFGF+ +Y+ A AI +
Sbjct: 363 IFVYNLAPDTEENVLWQLFGPFGAVQSVKVIRDLQSNKCKGFGFVTMTNYEEAVLAIQSL 422
Query: 192 NG 193
NG
Sbjct: 423 NG 424
Score = 81 (33.6 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 21/78 (26%), Positives = 37/78 (47%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTM 284
IFV NL + + +LF FG + S ++ D K GF+ + A A+ ++
Sbjct: 363 IFVYNLAPDTEENVLWQLFGPFGAVQSVKVIRDLQSNKCKGFGFVTMTNYEEAVLAIQSL 422
Query: 285 NGHVFKSKPLKVTLSGTK 302
NG+ ++ L+V+ K
Sbjct: 423 NGYTLGNRVLQVSFKTNK 440
Score = 54 (24.1 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
Identities = 23/95 (24%), Positives = 40/95 (42%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRV-ARNKNDE-----SRGFAIIVFNTPAEAKK 90
L+V+ L ++ L + F +G + R+ N E S+G I F+ EA +
Sbjct: 198 LYVSGLPKNMTQSDLESLFSPYGKIITSRILCDNITGEHAAGLSKGVGFIRFDQRFEADR 257
Query: 91 ARVEMNGHLI--GSKPVIITFVELKPGQRSKPVGP 123
A E+NG ++P+ + F P + P
Sbjct: 258 AIKELNGTTPKNSTEPITVKFAN-NPSSNKNSMQP 291
>UNIPROTKB|Q96B58 [details] [associations]
symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
protein, isoform CRA_d" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CH471053
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
HSSP:P11940 EMBL:AC016700 UniGene:Hs.413123 HGNC:HGNC:11802
ChiTaRS:TIA1 EMBL:BC015944 IPI:IPI00743479 SMR:Q96B58 STRING:Q96B58
Ensembl:ENST00000416149 UCSC:uc002sgm.3 Uniprot:Q96B58
Length = 214
Score = 176 (67.0 bits), Expect = 3.4e-13, P = 3.4e-13
Identities = 48/167 (28%), Positives = 80/167 (47%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK--NDESRGFAIIVFNTPAEAKKARVE 94
L+V NL V ++ F + G ++ ++ + ND + + F+ A A
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP---YCFVEFHEHRHAAAALAA 65
Query: 95 MNGHLIGSKPVIITFVELKPGQR----SKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
MNG I K V + + Q+ S V ++ VFV +L + E++K+
Sbjct: 66 MNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAA 125
Query: 151 FIKFGNIIEVKIVRD-ENGKSKGFGFIQFFSYKAAEKAIIEMNGRMI 196
F FG I + ++V+D GKSKG+GF+ FF+ AE AI +M G+ +
Sbjct: 126 FAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWL 172
Score = 135 (52.6 bits), Expect = 4.2e-07, P = 4.2e-07
Identities = 43/179 (24%), Positives = 74/179 (41%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMN 192
++V NL V E + F + G K++ D G + F++F ++ A A+ MN
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHAAAALAAMN 67
Query: 193 GRMIQHNSTFVSLAEIXXXXXXXXXXXXXL-LQPARKN-KIFVANLPSNINNSEFEELFA 250
GR I V+ A + Q ++ + +FV +L I + + FA
Sbjct: 68 GRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFA 127
Query: 251 RFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKP 303
FG I+ + +V D K GF+ F A +A+ M G + ++ + KP
Sbjct: 128 PFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKP 186
>UNIPROTKB|B1AM49 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623
UniGene:Hs.166109 HGNC:HGNC:3313 OMA:RAVENGP SMR:B1AM49
Ensembl:ENST00000359598 Uniprot:B1AM49
Length = 387
Score = 194 (73.4 bits), Expect = 3.4e-13, P = 3.4e-13
Identities = 55/176 (31%), Positives = 84/176 (47%)
Query: 118 SKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFI 176
S PV + K + V L + + +EELKS F G I K+VRD+ G+S G+GF+
Sbjct: 54 SSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFV 113
Query: 177 QFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXXXXXXXXLLQPARKNKIFVANL 236
+ K AEKAI +NG +Q + VS A R ++V+ L
Sbjct: 114 NYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASI-------------RDANLYVSGL 160
Query: 237 PSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNG 286
P + E E+LF+++G I +S ++ D + +GFI F A A+ +NG
Sbjct: 161 PKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 216
Score = 153 (58.9 bits), Expect = 7.7e-13, Sum P(2) = 7.7e-13
Identities = 43/160 (26%), Positives = 82/160 (51%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L VN L ++ + L + F G + ++ R+K +S G+ + + P +A+KA +
Sbjct: 69 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 128
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
NG + +K + +++ P + ++V L +T+ ++EL+ F ++G
Sbjct: 129 NGLRLQTKTIKVSYAR-----------PSSASIRDANLYVSGLPKTMTQKELEQLFSQYG 177
Query: 156 NIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEMNGR 194
II +I+ D+ G S+G GFI+F AE+AI +NG+
Sbjct: 178 RIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 217
Score = 121 (47.7 bits), Expect = 0.00011, P = 0.00011
Identities = 27/62 (43%), Positives = 34/62 (54%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAIIEM 191
+FV NL DE L F FG + VK++RD N K KGFGF+ +Y A AI +
Sbjct: 306 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 365
Query: 192 NG 193
NG
Sbjct: 366 NG 367
Score = 118 (46.6 bits), Expect = 0.00023, P = 0.00023
Identities = 28/76 (36%), Positives = 40/76 (52%)
Query: 228 KNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDK------HIGFIEFIMPKHATHAV 281
K + V LP N+ E + LF G I S LV DK GF+ +I PK A A+
Sbjct: 66 KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 125
Query: 282 STMNGHVFKSKPLKVT 297
+T+NG ++K +KV+
Sbjct: 126 NTLNGLRLQTKTIKVS 141
Score = 81 (33.6 bits), Expect = 7.7e-13, Sum P(2) = 7.7e-13
Identities = 21/78 (26%), Positives = 38/78 (48%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTM 284
IFV NL + + S ++F FG +T+ ++ D K GF+ A A++++
Sbjct: 306 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 365
Query: 285 NGHVFKSKPLKVTLSGTK 302
NG+ + L+V+ K
Sbjct: 366 NGYRLGDRVLQVSFKTNK 383
>ZFIN|ZDB-GENE-040704-9 [details] [associations]
symbol:elavl2 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 2 (Hu antigen B)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040704-9 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OrthoDB:EOG4JHCFV EMBL:AL954145
IPI:IPI00482002 UniGene:Dr.84858 SMR:Q1MT19
Ensembl:ENSDART00000139420 InParanoid:Q1MT19 Uniprot:Q1MT19
Length = 388
Score = 194 (73.4 bits), Expect = 3.4e-13, P = 3.4e-13
Identities = 56/177 (31%), Positives = 85/177 (48%)
Query: 118 SKPVG-PEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGF 175
+ PV P + K + V L + + +EELKS F G I K+VRD+ G+S G+GF
Sbjct: 54 TSPVEMPNGSEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGF 113
Query: 176 IQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXXXXXXXXLLQPARKNKIFVAN 235
+ + K AEKAI +NG +Q + VS A R ++V+
Sbjct: 114 VNYMEPKDAEKAINTLNGLRLQTKTIKVSYARPSSASI-------------RDANLYVSG 160
Query: 236 LPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNG 286
LP + E E+LF++FG I +S ++ D + +GFI F A A+ +NG
Sbjct: 161 LPKTMTQKELEQLFSQFGRIITSRILVDQVTGVSRGVGFIRFDRRVEAEEAIKGLNG 217
Score = 158 (60.7 bits), Expect = 3.9e-13, Sum P(2) = 3.9e-13
Identities = 44/160 (27%), Positives = 82/160 (51%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L VN L ++ + L + F G + ++ R+K +S G+ + + P +A+KA +
Sbjct: 70 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYMEPKDAEKAINTL 129
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
NG + +K + +++ P + ++V L +T+ ++EL+ F +FG
Sbjct: 130 NGLRLQTKTIKVSYAR-----------PSSASIRDANLYVSGLPKTMTQKELEQLFSQFG 178
Query: 156 NIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEMNGR 194
II +I+ D+ G S+G GFI+F AE+AI +NG+
Sbjct: 179 RIITSRILVDQVTGVSRGVGFIRFDRRVEAEEAIKGLNGQ 218
Score = 121 (47.7 bits), Expect = 0.00011, P = 0.00011
Identities = 27/62 (43%), Positives = 34/62 (54%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAIIEM 191
+FV NL DE L F FG + VK++RD N K KGFGF+ +Y A AI +
Sbjct: 307 IFVYNLAPDADENVLWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAVAIASL 366
Query: 192 NG 193
NG
Sbjct: 367 NG 368
Score = 116 (45.9 bits), Expect = 0.00039, P = 0.00039
Identities = 27/76 (35%), Positives = 40/76 (52%)
Query: 228 KNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDK------HIGFIEFIMPKHATHAV 281
K + V LP N+ E + LF G I S LV DK GF+ ++ PK A A+
Sbjct: 67 KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYMEPKDAEKAI 126
Query: 282 STMNGHVFKSKPLKVT 297
+T+NG ++K +KV+
Sbjct: 127 NTLNGLRLQTKTIKVS 142
Score = 78 (32.5 bits), Expect = 3.9e-13, Sum P(2) = 3.9e-13
Identities = 20/78 (25%), Positives = 38/78 (48%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTM 284
IFV NL + + + ++F FG +T+ ++ D K GF+ A A++++
Sbjct: 307 IFVYNLAPDADENVLWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAVAIASL 366
Query: 285 NGHVFKSKPLKVTLSGTK 302
NG+ + L+V+ K
Sbjct: 367 NGYRLGDRVLQVSFKTNK 384
>UNIPROTKB|E2RI94 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AAEX03007909
EMBL:AAEX03007910 EMBL:AAEX03007911 EMBL:AAEX03007912
Ensembl:ENSCAFT00000002645 Uniprot:E2RI94
Length = 388
Score = 194 (73.4 bits), Expect = 3.4e-13, P = 3.4e-13
Identities = 55/176 (31%), Positives = 84/176 (47%)
Query: 118 SKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFI 176
S PV + K + V L + + +EELKS F G I K+VRD+ G+S G+GF+
Sbjct: 55 SSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFV 114
Query: 177 QFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXXXXXXXXLLQPARKNKIFVANL 236
+ K AEKAI +NG +Q + VS A R ++V+ L
Sbjct: 115 NYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASI-------------RDANLYVSGL 161
Query: 237 PSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNG 286
P + E E+LF+++G I +S ++ D + +GFI F A A+ +NG
Sbjct: 162 PKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 217
Score = 153 (58.9 bits), Expect = 7.8e-13, Sum P(2) = 7.8e-13
Identities = 43/160 (26%), Positives = 82/160 (51%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L VN L ++ + L + F G + ++ R+K +S G+ + + P +A+KA +
Sbjct: 70 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 129
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
NG + +K + +++ P + ++V L +T+ ++EL+ F ++G
Sbjct: 130 NGLRLQTKTIKVSYAR-----------PSSASIRDANLYVSGLPKTMTQKELEQLFSQYG 178
Query: 156 NIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEMNGR 194
II +I+ D+ G S+G GFI+F AE+AI +NG+
Sbjct: 179 RIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 218
Score = 121 (47.7 bits), Expect = 0.00011, P = 0.00011
Identities = 27/62 (43%), Positives = 34/62 (54%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAIIEM 191
+FV NL DE L F FG + VK++RD N K KGFGF+ +Y A AI +
Sbjct: 307 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 366
Query: 192 NG 193
NG
Sbjct: 367 NG 368
Score = 118 (46.6 bits), Expect = 0.00023, P = 0.00023
Identities = 28/76 (36%), Positives = 40/76 (52%)
Query: 228 KNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDK------HIGFIEFIMPKHATHAV 281
K + V LP N+ E + LF G I S LV DK GF+ +I PK A A+
Sbjct: 67 KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 126
Query: 282 STMNGHVFKSKPLKVT 297
+T+NG ++K +KV+
Sbjct: 127 NTLNGLRLQTKTIKVS 142
Score = 81 (33.6 bits), Expect = 7.8e-13, Sum P(2) = 7.8e-13
Identities = 21/78 (26%), Positives = 38/78 (48%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTM 284
IFV NL + + S ++F FG +T+ ++ D K GF+ A A++++
Sbjct: 307 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 366
Query: 285 NGHVFKSKPLKVTLSGTK 302
NG+ + L+V+ K
Sbjct: 367 NGYRLGDRVLQVSFKTNK 384
>UNIPROTKB|G3N063 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:DAAA02022184
EMBL:DAAA02022185 Ensembl:ENSBTAT00000065940 Uniprot:G3N063
Length = 388
Score = 194 (73.4 bits), Expect = 3.4e-13, P = 3.4e-13
Identities = 55/176 (31%), Positives = 84/176 (47%)
Query: 118 SKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFI 176
S PV + K + V L + + +EELKS F G I K+VRD+ G+S G+GF+
Sbjct: 55 SSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFV 114
Query: 177 QFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXXXXXXXXLLQPARKNKIFVANL 236
+ K AEKAI +NG +Q + VS A R ++V+ L
Sbjct: 115 NYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASI-------------RDANLYVSGL 161
Query: 237 PSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNG 286
P + E E+LF+++G I +S ++ D + +GFI F A A+ +NG
Sbjct: 162 PKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 217
Score = 153 (58.9 bits), Expect = 2.0e-12, Sum P(2) = 2.0e-12
Identities = 43/160 (26%), Positives = 82/160 (51%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L VN L ++ + L + F G + ++ R+K +S G+ + + P +A+KA +
Sbjct: 70 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 129
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
NG + +K + +++ P + ++V L +T+ ++EL+ F ++G
Sbjct: 130 NGLRLQTKTIKVSYAR-----------PSSASIRDANLYVSGLPKTMTQKELEQLFSQYG 178
Query: 156 NIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEMNGR 194
II +I+ D+ G S+G GFI+F AE+AI +NG+
Sbjct: 179 RIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 218
Score = 121 (47.7 bits), Expect = 0.00011, P = 0.00011
Identities = 27/62 (43%), Positives = 34/62 (54%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAIIEM 191
+FV NL DE L F FG + VK++RD N K KGFGF+ +Y A AI +
Sbjct: 308 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 367
Query: 192 NG 193
NG
Sbjct: 368 NG 369
Score = 118 (46.6 bits), Expect = 0.00023, P = 0.00023
Identities = 28/76 (36%), Positives = 40/76 (52%)
Query: 228 KNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDK------HIGFIEFIMPKHATHAV 281
K + V LP N+ E + LF G I S LV DK GF+ +I PK A A+
Sbjct: 67 KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 126
Query: 282 STMNGHVFKSKPLKVT 297
+T+NG ++K +KV+
Sbjct: 127 NTLNGLRLQTKTIKVS 142
Score = 77 (32.2 bits), Expect = 2.0e-12, Sum P(2) = 2.0e-12
Identities = 20/72 (27%), Positives = 36/72 (50%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTM 284
IFV NL + + S ++F FG +T+ ++ D K GF+ A A++++
Sbjct: 308 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 367
Query: 285 NGHVFKSKPLKV 296
NG+ + L+V
Sbjct: 368 NGYRLGDRVLQV 379
>ZFIN|ZDB-GENE-040426-1547 [details] [associations]
symbol:tial1 "TIA1 cytotoxic granule-associated
RNA binding protein-like 1" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1547 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00680000099967 EMBL:BX530079
IPI:IPI00920337 ProteinModelPortal:E9QJJ0
Ensembl:ENSDART00000135321 ArrayExpress:E9QJJ0 Bgee:E9QJJ0
Uniprot:E9QJJ0
Length = 389
Score = 194 (73.4 bits), Expect = 3.5e-13, P = 3.5e-13
Identities = 70/287 (24%), Positives = 123/287 (42%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESR-------GFAII--VFNTP-- 85
L+V NL V ++ F + G + ++ ++D SR GF+++ N P
Sbjct: 10 LYVGNLSRDVTENLILQLFTQIGPCKSCKMITEQSDSSRKMNSSSIGFSVLQHTSNDPYC 69
Query: 86 -------AEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNL 138
+A A MNG I K E+K + P ++ VFV +L
Sbjct: 70 FVEFFEHRDAAAALAAMNGRKILGK-------EVKVNWATTPSSQKKDTSNHFHVFVGDL 122
Query: 139 VETVDEEELKSHFIKFGNIIEVKIVRD-ENGKSKGFGFIQFFSYKAAEKAIIEMNG---- 193
+ +++++ F FG I + ++V+D GKSKG+GF+ F++ AE AI+ M G
Sbjct: 123 SPEITTDDIRAAFAPFGKISDARVVKDMTTGKSKGYGFVSFYNKLDAENAIVHMGGQWLG 182
Query: 194 -RMIQHN-STFVSLA--EIXXXXXXXXXXXXXLLQPARKN-KIFVANLPSNINNSEFEEL 248
R I+ N +T A + + Q + +N ++ + S + +
Sbjct: 183 GRQIRTNWATRKPPAPKSVQDNSAKQLRFDEVVNQSSPQNCTVYCGGIQSGLTEHLMRQT 242
Query: 249 FARFGTITSSSLVSDKHIGFIEFIMPKHATHAVSTMNGHVFKSKPLK 295
F+ FG I + +K FI F + A HA+ ++NG + +K
Sbjct: 243 FSPFGQIMEIRVFPEKGYSFIRFSSHESAAHAIVSVNGTTIEGHVVK 289
>SGD|S000003391 [details] [associations]
symbol:NSR1 "Nucleolar protein that binds nuclear
localization sequences" species:4932 "Saccharomyces cerevisiae"
[GO:0003723 "RNA binding" evidence=IEA;IDA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=IEA;TAS]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006950 "response to stress"
evidence=IEA] [GO:0000028 "ribosomal small subunit assembly"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 SGD:S000003391 GO:GO:0005739
GO:GO:0005730 GO:GO:0006950 EMBL:BK006941 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003697 GO:GO:0000028
GO:GO:0006364 eggNOG:COG0724 EMBL:X85807 KO:K11294 OMA:VITDRES
OrthoDB:EOG422DTZ GeneTree:ENSGT00550000074656 EMBL:X57185
EMBL:Z72944 EMBL:Z72946 PIR:A39205 RefSeq:NP_011675.1
ProteinModelPortal:P27476 SMR:P27476 DIP:DIP-5537N IntAct:P27476
MINT:MINT-543806 STRING:P27476 PaxDb:P27476 PeptideAtlas:P27476
EnsemblFungi:YGR159C GeneID:853064 KEGG:sce:YGR159C CYGD:YGR159c
HOGENOM:HOG000113864 NextBio:973004 Genevestigator:P27476
GermOnline:YGR159C Uniprot:P27476
Length = 414
Score = 194 (73.4 bits), Expect = 4.2e-13, P = 4.2e-13
Identities = 52/186 (27%), Positives = 85/186 (45%)
Query: 18 DDEGARSXXXXXXXXXXXXLHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKN-DESRG 76
D+E + + V L S+D++ L EF+ G + RV + D SRG
Sbjct: 151 DEESSNKKQKNEETEEPATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRG 210
Query: 77 FAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPG---QRSKPVGPEEKQYKKDKV 133
+ + F + A+KA EM G I +P+ KP R+K G + D +
Sbjct: 211 YGYVDFENKSYAEKAIQEMQGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPSE-PSDTL 269
Query: 134 FVKNLVETVDEEELKSHFIKFGNIIEVKI-VRDENGKSKGFGFIQFFSYKAAEKAIIEMN 192
F+ NL D + + F K G ++ V+I E + KGFG++QF + + A+KA+ +
Sbjct: 270 FLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQ 329
Query: 193 GRMIQH 198
G I +
Sbjct: 330 GEYIDN 335
Score = 166 (63.5 bits), Expect = 8.8e-10, P = 8.8e-10
Identities = 44/180 (24%), Positives = 86/180 (47%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAIIEM 191
+FV L ++D+E LK F G +I +++ + +S+G+G++ F + AEKAI EM
Sbjct: 170 IFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEM 229
Query: 192 NGRMIQHN--STFVSLAEIXXXXXXXXXXXXXLLQPARKNKIFVANLPSNINNSEFEELF 249
G+ I + +S ++ +P+ + +F+ NL N + ELF
Sbjct: 230 QGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPSEPS--DTLFLGNLSFNADRDAIFELF 287
Query: 250 ARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKP 303
A+ G + S + + K G+++F + A A+ + G ++P+++ S +P
Sbjct: 288 AKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNRPVRLDFSSPRP 347
>UNIPROTKB|Q91903 [details] [associations]
symbol:elavl2 "ELAV-like protein 2" species:8355 "Xenopus
laevis" [GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005938 "cell cortex" evidence=IDA] [GO:0007399 "nervous system
development" evidence=IMP] [GO:0008298 "intracellular mRNA
localization" evidence=IMP] [GO:0017131 "uridine-rich cytoplasmic
polyadenylylation element binding" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA;IPI] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0051260 "protein homooligomerization" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0007399 GO:GO:0000166
GO:GO:0051260 Gene3D:3.30.70.330 GO:GO:0000122 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 HOVERGEN:HBG002295 TIGRFAMs:TIGR01661
HSSP:P26378 KO:K13208 EMBL:X85111 EMBL:U17597 EMBL:BC170539
EMBL:BC094189 PIR:I51676 RefSeq:NP_001081035.1
RefSeq:NP_001081613.1 UniGene:Xl.1648 UniGene:Xl.34955
ProteinModelPortal:Q91903 SMR:Q91903 MINT:MINT-2880431
GeneID:394342 GeneID:397952 KEGG:xla:394342 KEGG:xla:397952
CTD:394342 CTD:397952 Xenbase:XB-GENE-6254447
Xenbase:XB-GENE-866091 GO:GO:0017131 Uniprot:Q91903
Length = 389
Score = 193 (73.0 bits), Expect = 4.6e-13, P = 4.6e-13
Identities = 55/177 (31%), Positives = 84/177 (47%)
Query: 118 SKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE--NGKSKGFGF 175
S PV + K + V L + + +EELKS F G I K+VRD+ G+S G+GF
Sbjct: 53 SSPVESNNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLGYGF 112
Query: 176 IQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXXXXXXXXLLQPARKNKIFVAN 235
+ + K AEKAI +NG +Q + VS A R ++V+
Sbjct: 113 VNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASI-------------RDANLYVSG 159
Query: 236 LPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNG 286
LP + E E+LF+++G I +S ++ D + +GFI F A A+ +NG
Sbjct: 160 LPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 216
Score = 152 (58.6 bits), Expect = 8.1e-13, Sum P(2) = 8.1e-13
Identities = 44/161 (27%), Positives = 82/161 (50%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDE--SRGFAIIVFNTPAEAKKARVE 94
L VN L ++ + L + F G + ++ R+K E S G+ + + P +A+KA
Sbjct: 68 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLGYGFVNYIDPKDAEKAINT 127
Query: 95 MNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKF 154
+NG + +K + +++ P + ++V L +T+ ++EL+ F ++
Sbjct: 128 LNGLRLQTKTIKVSYAR-----------PSSASIRDANLYVSGLPKTMTQKELEQLFSQY 176
Query: 155 GNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEMNGR 194
G II +I+ D+ G S+G GFI+F AE+AI +NG+
Sbjct: 177 GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 217
Score = 121 (47.7 bits), Expect = 0.00011, P = 0.00011
Identities = 27/62 (43%), Positives = 34/62 (54%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAIIEM 191
+FV NL DE L F FG + VK++RD N K KGFGF+ +Y A AI +
Sbjct: 308 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 367
Query: 192 NG 193
NG
Sbjct: 368 NG 369
Score = 116 (45.9 bits), Expect = 0.00039, P = 0.00039
Identities = 28/77 (36%), Positives = 40/77 (51%)
Query: 228 KNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDK-------HIGFIEFIMPKHATHA 280
K + V LP N+ E + LF G I S LV DK GF+ +I PK A A
Sbjct: 65 KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLGYGFVNYIDPKDAEKA 124
Query: 281 VSTMNGHVFKSKPLKVT 297
++T+NG ++K +KV+
Sbjct: 125 INTLNGLRLQTKTIKVS 141
Score = 82 (33.9 bits), Expect = 8.1e-13, Sum P(2) = 8.1e-13
Identities = 21/78 (26%), Positives = 39/78 (50%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTM 284
IFV NL + + S ++F FG +T+ ++ D K GF+ A A++++
Sbjct: 308 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 367
Query: 285 NGHVFKSKPLKVTLSGTK 302
NG+ + L+V+ +K
Sbjct: 368 NGYRLGDRVLQVSFKTSK 385
>ASPGD|ASPL0000000406 [details] [associations]
symbol:AN6501 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BN001301 EMBL:AACD01000109
eggNOG:COG0724 HOGENOM:HOG000200535 KO:K12831 OrthoDB:EOG4Q886Z
RefSeq:XP_664105.1 ProteinModelPortal:Q5AYX9 SMR:Q5AYX9
STRING:Q5AYX9 EnsemblFungi:CADANIAT00007269 GeneID:2870231
KEGG:ani:AN6501.2 OMA:GDQAERM Uniprot:Q5AYX9
Length = 352
Score = 191 (72.3 bits), Expect = 5.8e-13, P = 5.8e-13
Identities = 47/172 (27%), Positives = 91/172 (52%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDES-RGFAIIVFNTPAEAKKARVEM 95
+++ NL+ V + + + G + +V + +++ +S +G+ + FN+ +A+ A M
Sbjct: 15 VYIGNLDERVSDSLVWELMLQAGRIVNVHLPKDRVTQSHQGYGFVEFNSEEDAEYASRIM 74
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
NG + KP+ + Q+S +G E +FV NL V E+ L F +FG
Sbjct: 75 NGIRLYGKPIRVNKASADK-QKSVEIGAE--------LFVGNLDPMVTEQVLYDTFSRFG 125
Query: 156 NIIEV-KIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLA 206
N++ + K+ RD++ SKG+GF+ F +++++ AI MNG+ + + V A
Sbjct: 126 NLVNLPKVARDDSNLSKGYGFVSFADFESSDAAIANMNGQYLMNKQVSVQYA 177
Score = 127 (49.8 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 46/186 (24%), Positives = 83/186 (44%)
Query: 126 KQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKS-KGFGFIQFFSYKAA 184
+Q K+ V++ NL E V + + ++ G I+ V + +D +S +G+GF++F S + A
Sbjct: 8 EQDKEATVYIGNLDERVSDSLVWELMLQAGRIVNVHLPKDRVTQSHQGYGFVEFNSEEDA 67
Query: 185 EKAIIEMNGRMIQHNSTFVSLAEIXXXXXXXXXXXXXLLQPARKNKIFVANLPSNINNSE 244
E A MNG + V+ A ++FV NL +
Sbjct: 68 EYASRIMNGIRLYGKPIRVNKASADKQKSVEIGA-----------ELFVGNLDPMVTEQV 116
Query: 245 FEELFARFGTITSSSLVS--DKHI----GFIEFIMPKHATHAVSTMNGHVFKSKPLKVTL 298
+ F+RFG + + V+ D ++ GF+ F + + A++ MNG +K + V
Sbjct: 117 LYDTFSRFGNLVNLPKVARDDSNLSKGYGFVSFADFESSDAAIANMNGQYLMNKQVSVQY 176
Query: 299 SGTKPG 304
+ K G
Sbjct: 177 AYKKDG 182
Score = 112 (44.5 bits), Expect = 0.00093, P = 0.00093
Identities = 26/81 (32%), Positives = 44/81 (54%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDV-RVARNKNDESRGFAIIVFNTPAEAKKARVEM 95
L V NL+P V Q L + F +FG L ++ +VAR+ ++ S+G+ + F + A M
Sbjct: 103 LFVGNLDPMVTEQVLYDTFSRFGNLVNLPKVARDDSNLSKGYGFVSFADFESSDAAIANM 162
Query: 96 NGHLIGSKPVIITFVELKPGQ 116
NG + +K V + + K G+
Sbjct: 163 NGQYLMNKQVSVQYAYKKDGK 183
>UNIPROTKB|H0YEU6 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL365277 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000527718 Uniprot:H0YEU6
Length = 249
Score = 180 (68.4 bits), Expect = 6.0e-13, P = 6.0e-13
Identities = 34/81 (41%), Positives = 57/81 (70%)
Query: 127 QYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEK 186
+Y+ +++KNL +T+D+E+L+ F FG+I K++ E+G+SKGFGF+ F S + A K
Sbjct: 17 RYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATK 75
Query: 187 AIIEMNGRMIQHNSTFVSLAE 207
A+ EMNGR++ +V+LA+
Sbjct: 76 AVTEMNGRIVGSKPLYVALAQ 96
Score = 158 (60.7 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 28/82 (34%), Positives = 52/82 (63%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L++ NL+ ++D++ L EF FG++ +V ++ S+GF + F++P EA KA EMN
Sbjct: 23 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMN 81
Query: 97 GHLIGSKPVIITFVELKPGQRS 118
G ++GSKP+ + + K +++
Sbjct: 82 GRIVGSKPLYVALAQRKEERKA 103
Score = 127 (49.8 bits), Expect = 7.9e-06, P = 7.9e-06
Identities = 28/76 (36%), Positives = 46/76 (60%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNG 286
+++ NL I++ + + F+ FG+ITS+ ++ + K GF+ F P+ AT AV+ MNG
Sbjct: 23 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 82
Query: 287 HVFKSKPLKVTLSGTK 302
+ SKPL V L+ K
Sbjct: 83 RIVGSKPLYVALAQRK 98
>ZFIN|ZDB-GENE-030131-6154 [details] [associations]
symbol:hnrnpa0b "heterogeneous nuclear
ribonucleoprotein A0b" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-6154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12894
EMBL:BC066434 IPI:IPI00507638 RefSeq:NP_999871.1 UniGene:Dr.35374
ProteinModelPortal:Q6NYW8 SMR:Q6NYW8 STRING:Q6NYW8 PRIDE:Q6NYW8
GeneID:334222 KEGG:dre:334222 CTD:334222 InParanoid:Q6NYW8
OrthoDB:EOG4M65KN NextBio:20810313 ArrayExpress:Q6NYW8 Bgee:Q6NYW8
Uniprot:Q6NYW8
Length = 314
Score = 189 (71.6 bits), Expect = 6.0e-13, P = 6.0e-13
Identities = 52/172 (30%), Positives = 85/172 (49%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKN-DESRGFAIIVFNTPAEAKKARVEM 95
L V L N L + F++FG L D V +N SR F + ++T EA A +
Sbjct: 10 LFVGGLNVQTTNDGLRSYFEQFGNLTDCVVVQNDQLQRSRCFGFVTYSTSEEADAA-MAA 68
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
H++ K V E+K + G E K K+FV L + ++E++L F +FG
Sbjct: 69 RPHVVDGKNV-----EVKRAVAREDAGRPEALAKVKKIFVGGLKDDIEEKDLTEFFSQFG 123
Query: 156 NIIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLA 206
I + +++ D++ GK +GFGF+ F +A+KA++ + MI + V A
Sbjct: 124 MIEKSEVITDKDTGKKRGFGFVHFEDNDSADKAVV-LKFHMINGHKVEVKKA 174
Score = 137 (53.3 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 51/179 (28%), Positives = 85/179 (47%)
Query: 132 KVFVKNL-VETVDEEELKSHFIKFGNIIEVKIVR-DENGKSKGFGFIQFFSYKAAEKAII 189
K+FV L V+T ++ L+S+F +FGN+ + +V+ D+ +S+ FGF+ +Y +E+A
Sbjct: 9 KLFVGGLNVQTTNDG-LRSYFEQFGNLTDCVVVQNDQLQRSRCFGFV---TYSTSEEADA 64
Query: 190 EMNGRMIQHNSTFVSLAEIXXXXXXXXXXXXXLLQPARKNKIFVANLPSNINNSEFEELF 249
M R + V E+ L A+ KIFV L +I + E F
Sbjct: 65 AMAARPHVVDGKNV---EVKRAVAREDAGRPEAL--AKVKKIFVGGLKDDIEEKDLTEFF 119
Query: 250 ARFGTITSSSLVSDKH------IGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
++FG I S +++DK GF+ F A AV + H+ ++V + TK
Sbjct: 120 SQFGMIEKSEVITDKDTGKKRGFGFVHFEDNDSADKAV-VLKFHMINGHKVEVKKALTK 177
>WB|WBGene00007396 [details] [associations]
symbol:tiar-3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0019722
"calcium-mediated signaling" evidence=IEA] [GO:0016021 "integral to
membrane" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:COG0724 GeneTree:ENSGT00680000099967 EMBL:Z78536
RefSeq:NP_509705.3 ProteinModelPortal:Q93194 SMR:Q93194
EnsemblMetazoa:C07A4.1 GeneID:182350 KEGG:cel:CELE_C07A4.1
UCSC:C07A4.1 CTD:182350 WormBase:C07A4.1 OMA:ASEPPME Uniprot:Q93194
Length = 450
Score = 193 (73.0 bits), Expect = 6.8e-13, P = 6.8e-13
Identities = 51/184 (27%), Positives = 87/184 (47%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRD-ENGKSKGFGFIQFFSYKAAEKAIIEM 191
VFV +L + V E LKS F KFG + E K++RD + KSKG+GF+ F + + AE AI M
Sbjct: 227 VFVGDLSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGYGFVSFPNKQNAENAIAGM 286
Query: 192 NGRMIQHNSTFVSLAEIXXXXXXXXXXXXXLLQPARK---NKIFVANLPSNINNSEFEEL 248
NG+ I + + A + + K ++V N+ +++ +L
Sbjct: 287 NGKWIGKRAVRTNWAARKNSEENRDKLTFEQVFNSTKADNTSVYVGNISQQTTDADLRDL 346
Query: 249 FARFGTITSSSLVSDKHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK--PGVS 306
F+ +G I + + F+ + + AT A+ MNG ++ + T+ P +
Sbjct: 347 FSTYGDIAEVRIFKTQRYAFVRYEKKECATKAIMEMNGKEMAGNQVRCSWGRTQAVPNQA 406
Query: 307 ITNP 310
+ NP
Sbjct: 407 L-NP 409
Score = 177 (67.4 bits), Expect = 5.5e-11, P = 5.5e-11
Identities = 46/167 (27%), Positives = 85/167 (50%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKKARVEMNG 97
V +L V N+ L + F KFG + + +V R+ + +S+G+ + F A+ A MNG
Sbjct: 229 VGDLSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGYGFVSFPNKQNAENAIAGMNG 288
Query: 98 HLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDK-----VFVKNLVETVDEEELKSHFI 152
IG + V + K + ++ E+ + K V+V N+ + + +L+ F
Sbjct: 289 KWIGKRAVRTNWAARKNSEENRDKLTFEQVFNSTKADNTSVYVGNISQQTTDADLRDLFS 348
Query: 153 KFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHN 199
+G+I EV+I K++ + F+++ + A KAI+EMNG+ + N
Sbjct: 349 TYGDIAEVRIF-----KTQRYAFVRYEKKECATKAIMEMNGKEMAGN 390
>UNIPROTKB|Q9Y4C8 [details] [associations]
symbol:RBM19 "Probable RNA-binding protein 19" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005730
"nucleolus" evidence=ISS;IDA] [GO:0005737 "cytoplasm"
evidence=ISS;IDA] [GO:0040019 "positive regulation of embryonic
development" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007275 GO:GO:0005737 GO:GO:0005694
GO:GO:0005654 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0040019 eggNOG:COG0724 KO:K14787
HOGENOM:HOG000211156 OMA:VFREKNV EMBL:AB014582 EMBL:AL117547
EMBL:AC009731 EMBL:AC073863 EMBL:AC090669 EMBL:BC004289
EMBL:BC006137 IPI:IPI00000686 PIR:T17297 RefSeq:NP_001140170.1
RefSeq:NP_001140171.1 RefSeq:NP_057280.2 UniGene:Hs.7482 PDB:2DGW
PDBsum:2DGW ProteinModelPortal:Q9Y4C8 SMR:Q9Y4C8 MINT:MINT-1196129
STRING:Q9Y4C8 PhosphoSite:Q9Y4C8 DMDM:308153566 SWISS-2DPAGE:Q9Y4C8
PaxDb:Q9Y4C8 PRIDE:Q9Y4C8 DNASU:9904 Ensembl:ENST00000261741
Ensembl:ENST00000392561 Ensembl:ENST00000545145 GeneID:9904
KEGG:hsa:9904 UCSC:uc001tvm.3 CTD:9904 GeneCards:GC12M114259
HGNC:HGNC:29098 HPA:HPA038860 neXtProt:NX_Q9Y4C8
PharmGKB:PA134886784 HOVERGEN:HBG055637 InParanoid:Q9Y4C8
OrthoDB:EOG4D7Z56 PhylomeDB:Q9Y4C8 ChiTaRS:RBM19
EvolutionaryTrace:Q9Y4C8 GenomeRNAi:9904 NextBio:37345 Bgee:Q9Y4C8
CleanEx:HS_RBM19 Genevestigator:Q9Y4C8 GermOnline:ENSG00000122965
Uniprot:Q9Y4C8
Length = 960
Score = 157 (60.3 bits), Expect = 8.2e-13, Sum P(2) = 8.2e-13
Identities = 44/172 (25%), Positives = 80/172 (46%)
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGK----SKGFGFIQFF 179
EE+ +F+KNL EE+LK F K G + I + +N S GFGF+++
Sbjct: 723 EEESLPGCTLFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYR 782
Query: 180 SYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXXXXXXXXLLQPARKNKIFVANLPSN 239
+ A+KA+ ++ G ++ + V ++E + + +KI V N+P
Sbjct: 783 KPEQAQKALKQLQGHVVDGHKLEVRISERATKPAVTLARKKQVPRKQTTSKILVRNIPFQ 842
Query: 240 INNSEFEELFARFGTITSSSLV-----SDKH--IGFIEFIMPKHATHAVSTM 284
++ E ELF+ FG + + L + H GF++F+ + A A + +
Sbjct: 843 AHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRAFNAL 894
Score = 156 (60.0 bits), Expect = 4.7e-08, P = 4.7e-08
Identities = 47/162 (29%), Positives = 78/162 (48%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDE----SRGFAIIVFNTPAEAKKAR 92
L + NL + L F K GT++ +++ KN S GF + + P +A+KA
Sbjct: 732 LFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKPEQAQKAL 791
Query: 93 VEMNGHLI-GSK-PVIITFVELKPG---QRSKPVGPEEKQYKKDKVFVKNLVETVDEEEL 147
++ GH++ G K V I+ KP R K V P KQ K+ V+N+ E+
Sbjct: 792 KQLQGHVVDGHKLEVRISERATKPAVTLARKKQV-PR-KQ-TTSKILVRNIPFQAHSREI 848
Query: 148 KSHFIKFGNIIEVKIVRDENGKS--KGFGFIQFFSYKAAEKA 187
+ F FG + V++ + G +GFGF+ F + + A++A
Sbjct: 849 RELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRA 890
Score = 128 (50.1 bits), Expect = 6.9e-13, Sum P(2) = 6.9e-13
Identities = 40/149 (26%), Positives = 72/149 (48%)
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKP--- 120
+R+ RN + G+ + F+ E K+A ++ N +G + + + + P + P
Sbjct: 322 IRIVRNAHGNKTGYIFVDFSNEEEVKQA-LKCNREYMGGRYIEVFREKNVPTTKGAPKNT 380
Query: 121 --------VGPEEKQY---KKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NG 168
+G E++ + ++FV+NL T EE+L+ F K+G + E+ D
Sbjct: 381 TKSWQGRILGENEEEEDLAESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTK 440
Query: 169 KSKGFGFIQFFSYKAAEKAIIEMNGRMIQ 197
K KGF FI F + A KA E++G++ Q
Sbjct: 441 KPKGFAFITFMFPEHAVKAYSEVDGQVFQ 469
Score = 121 (47.7 bits), Expect = 6.9e-13, Sum P(2) = 6.9e-13
Identities = 28/97 (28%), Positives = 50/97 (51%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSDKH---------IGFIEFIMPKHATHAV 281
+F+ NL + + +E+F++ GT+ S S+ K+ GF+E+ P+ A A+
Sbjct: 732 LFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKPEQAQKAL 791
Query: 282 STMNGHVFKSKPLKVTLS--GTKPGVSITNPTKAPKK 316
+ GHV L+V +S TKP V++ + P+K
Sbjct: 792 KQLQGHVVDGHKLEVRISERATKPAVTLARKKQVPRK 828
Score = 116 (45.9 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 29/87 (33%), Positives = 44/87 (50%)
Query: 226 ARKNKIFVANLPSNINNSEFEELFARFGTITS-----SSLVSD-KHIGFIEFIMPKHATH 279
A ++FV NLP + E+LF+++G ++ SL K FI F+ P+HA
Sbjct: 399 AESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVK 458
Query: 280 AVSTMNGHVFKSKPLKVTLSGTKPGVS 306
A S ++G VF+ + L V S K S
Sbjct: 459 AYSEVDGQVFQGRMLHVLPSTIKKEAS 485
Score = 93 (37.8 bits), Expect = 3.3e-09, Sum P(2) = 3.3e-09
Identities = 22/65 (33%), Positives = 34/65 (52%)
Query: 132 KVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEM 191
++ VKNL + EE + F FG + + + ++GK + FGFI F S + A+KA
Sbjct: 3 RLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQKAQKHF 62
Query: 192 NGRMI 196
N I
Sbjct: 63 NKSFI 67
Score = 88 (36.0 bits), Expect = 8.2e-13, Sum P(2) = 8.2e-13
Identities = 25/84 (29%), Positives = 38/84 (45%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L V NL + + F FGTL D + K+ + R F I F + EA+KA+ N
Sbjct: 4 LIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQKAQKHFN 63
Query: 97 GHLIGSKPVIITFVELKPGQRSKP 120
I + + + F + G +KP
Sbjct: 64 KSFIDTSRITVEFCK-SFGDPAKP 86
Score = 79 (32.9 bits), Expect = 7.8e-08, Sum P(3) = 7.8e-08
Identities = 26/99 (26%), Positives = 46/99 (46%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L V NL + + L F K+G L ++ + + +GFA I F P A KA E+
Sbjct: 404 LFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVKAYSEV 463
Query: 96 NGHLIGSKP--VIITFVELKPGQRSKPVGPEEKQYKKDK 132
+G + + V+ + ++ + + + +G YKK K
Sbjct: 464 DGQVFQGRMLHVLPSTIKKEASEDASALG--SSSYKKKK 500
Score = 71 (30.1 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 26/86 (30%), Positives = 35/86 (40%)
Query: 228 KNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKHIGFIEFIMPKHATHAVSTMNGH 287
K I V NLP+ ++ +E F FG++ L +EF+ P A A +
Sbjct: 586 KTVILVKNLPAGTLAAQLQETFGHFGSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYS 645
Query: 288 VFKSKPLKVTLSGTKPGV-SITNPTK 312
F PL L GV S T P K
Sbjct: 646 KFHHVPLY--LEWAPVGVFSSTAPQK 669
Score = 43 (20.2 bits), Expect = 0.00044, Sum P(2) = 0.00044
Identities = 25/80 (31%), Positives = 33/80 (41%)
Query: 13 DEGISDDEGARSXXXXXXXXXXXXLHVNNLEPSVDNQALINE-FKKFGTLRDVRVARNKN 71
D G+S D S + V NL P+ A + E F FG+L V +
Sbjct: 569 DNGVSLD----SFSQAAAERSKTVILVKNL-PAGTLAAQLQETFGHFGSLGRVLLP---- 619
Query: 72 DESRGFAIIVFNTPAEAKKA 91
E AI+ F P EA+KA
Sbjct: 620 -EGGITAIVEFLEPLEARKA 638
Score = 40 (19.1 bits), Expect = 9.7e-09, Sum P(3) = 9.7e-09
Identities = 17/79 (21%), Positives = 32/79 (40%)
Query: 130 KDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAII 189
K + VKNL +L+ F FG++ +++ E G + ++F A KA
Sbjct: 586 KTVILVKNLPAGTLAAQLQETFGHFGSL--GRVLLPEGGIT---AIVEFLEPLEARKAFR 640
Query: 190 EMNGRMIQHNSTFVSLAEI 208
+ H ++ A +
Sbjct: 641 HLAYSKFHHVPLYLEWAPV 659
>MGI|MGI:109157 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0007399 "nervous system development" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=ISO;IDA] [GO:0030154 "cell
differentiation" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
MGI:MGI:109157 GO:GO:0007399 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OMA:ARRYTGP
ChiTaRS:ELAVL3 EMBL:U29148 EMBL:U29149 EMBL:BC052097
IPI:IPI00122451 IPI:IPI00222990 RefSeq:NP_034617.1
UniGene:Mm.390167 PDB:1D8Z PDB:1D9A PDB:1FNX PDBsum:1D8Z
PDBsum:1D9A PDBsum:1FNX ProteinModelPortal:Q60900 SMR:Q60900
STRING:Q60900 PhosphoSite:Q60900 PaxDb:Q60900 PRIDE:Q60900
Ensembl:ENSMUST00000003501 GeneID:15571 KEGG:mmu:15571
UCSC:uc009onl.2 UCSC:uc009onn.1 InParanoid:Q60900 OrthoDB:EOG43R3N0
EvolutionaryTrace:Q60900 NextBio:288556 Bgee:Q60900
Genevestigator:Q60900 GermOnline:ENSMUSG00000003410 Uniprot:Q60900
Length = 367
Score = 171 (65.3 bits), Expect = 1.7e-10, P = 1.7e-10
Identities = 51/172 (29%), Positives = 83/172 (48%)
Query: 130 KDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAI 188
K + V L + + ++E KS F G+I K+VRD+ G+S G+GF+ + A+KAI
Sbjct: 38 KTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAI 97
Query: 189 IEMNGRMIQHNSTFVSLAEIXXXXXXXXXXXXXLLQPARKNKIFVANLPSNINNSEFEEL 248
+NG +Q + VS A R ++V+ LP ++ E E+L
Sbjct: 98 NTLNGLKLQTKTIKVSYARPSSASI-------------RDANLYVSGLPKTMSQKEMEQL 144
Query: 249 FARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
F+++G I +S ++ D + +GFI F A A+ +NG KPL
Sbjct: 145 FSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQ----KPL 192
Score = 150 (57.9 bits), Expect = 6.9e-13, Sum P(2) = 6.9e-13
Identities = 41/148 (27%), Positives = 80/148 (54%)
Query: 53 NEFKK-FGTLRDV---RVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVII 107
+EFK FG++ D+ ++ R+K +S G+ + ++ P +A KA +NG + +K + +
Sbjct: 53 DEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKV 112
Query: 108 TFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE- 166
++ P + ++V L +T+ ++E++ F ++G II +I+ D+
Sbjct: 113 SYAR-----------PSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQA 161
Query: 167 NGKSKGFGFIQFFSYKAAEKAIIEMNGR 194
G S+G GFI+F AE+AI +NG+
Sbjct: 162 TGVSRGVGFIRFDKRIEAEEAIKGLNGQ 189
Score = 115 (45.5 bits), Expect = 0.00046, P = 0.00046
Identities = 26/62 (41%), Positives = 33/62 (53%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRD-ENGKSKGFGFIQFFSYKAAEKAIIEM 191
+FV NL DE L F FG + VK++RD K KGFGF+ +Y A AI +
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 192 NG 193
NG
Sbjct: 346 NG 347
Score = 114 (45.2 bits), Expect = 0.00060, P = 0.00060
Identities = 27/76 (35%), Positives = 39/76 (51%)
Query: 228 KNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDK------HIGFIEFIMPKHATHAV 281
K + V LP N+ EF+ LF G I S LV DK GF+ + P A A+
Sbjct: 38 KTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAI 97
Query: 282 STMNGHVFKSKPLKVT 297
+T+NG ++K +KV+
Sbjct: 98 NTLNGLKLQTKTIKVS 113
Score = 84 (34.6 bits), Expect = 6.9e-13, Sum P(2) = 6.9e-13
Identities = 22/78 (28%), Positives = 38/78 (48%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTM 284
IFV NL + S +LF FG +T+ ++ D K GF+ A A++++
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 285 NGHVFKSKPLKVTLSGTK 302
NG+ + L+V+ +K
Sbjct: 346 NGYRLGERVLQVSFKTSK 363
>RGD|628892 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:628892 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 HSSP:P19339 eggNOG:COG0724 EMBL:CH473993
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OrthoDB:EOG43R3N0
EMBL:AB097198 IPI:IPI00192527 RefSeq:NP_758827.1 UniGene:Rn.22586
SMR:Q76IJ9 STRING:Q76IJ9 Ensembl:ENSRNOT00000018416 GeneID:282824
KEGG:rno:282824 UCSC:RGD:628892 InParanoid:Q76IJ9 NextBio:624869
Genevestigator:Q76IJ9 Uniprot:Q76IJ9
Length = 367
Score = 171 (65.3 bits), Expect = 1.7e-10, P = 1.7e-10
Identities = 51/172 (29%), Positives = 83/172 (48%)
Query: 130 KDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAI 188
K + V L + + ++E KS F G+I K+VRD+ G+S G+GF+ + A+KAI
Sbjct: 38 KTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAI 97
Query: 189 IEMNGRMIQHNSTFVSLAEIXXXXXXXXXXXXXLLQPARKNKIFVANLPSNINNSEFEEL 248
+NG +Q + VS A R ++V+ LP ++ E E+L
Sbjct: 98 NTLNGLKLQTKTIKVSYARPSSASI-------------RDANLYVSGLPKTMSQKEMEQL 144
Query: 249 FARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
F+++G I +S ++ D + +GFI F A A+ +NG KPL
Sbjct: 145 FSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQ----KPL 192
Score = 150 (57.9 bits), Expect = 6.9e-13, Sum P(2) = 6.9e-13
Identities = 41/148 (27%), Positives = 80/148 (54%)
Query: 53 NEFKK-FGTLRDV---RVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVII 107
+EFK FG++ D+ ++ R+K +S G+ + ++ P +A KA +NG + +K + +
Sbjct: 53 DEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKV 112
Query: 108 TFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE- 166
++ P + ++V L +T+ ++E++ F ++G II +I+ D+
Sbjct: 113 SYAR-----------PSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQA 161
Query: 167 NGKSKGFGFIQFFSYKAAEKAIIEMNGR 194
G S+G GFI+F AE+AI +NG+
Sbjct: 162 TGVSRGVGFIRFDKRIEAEEAIKGLNGQ 189
Score = 115 (45.5 bits), Expect = 0.00046, P = 0.00046
Identities = 26/62 (41%), Positives = 33/62 (53%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRD-ENGKSKGFGFIQFFSYKAAEKAIIEM 191
+FV NL DE L F FG + VK++RD K KGFGF+ +Y A AI +
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 192 NG 193
NG
Sbjct: 346 NG 347
Score = 114 (45.2 bits), Expect = 0.00060, P = 0.00060
Identities = 27/76 (35%), Positives = 39/76 (51%)
Query: 228 KNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDK------HIGFIEFIMPKHATHAV 281
K + V LP N+ EF+ LF G I S LV DK GF+ + P A A+
Sbjct: 38 KTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAI 97
Query: 282 STMNGHVFKSKPLKVT 297
+T+NG ++K +KV+
Sbjct: 98 NTLNGLKLQTKTIKVS 113
Score = 84 (34.6 bits), Expect = 6.9e-13, Sum P(2) = 6.9e-13
Identities = 22/78 (28%), Positives = 38/78 (48%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTM 284
IFV NL + S +LF FG +T+ ++ D K GF+ A A++++
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 285 NGHVFKSKPLKVTLSGTK 302
NG+ + L+V+ +K
Sbjct: 346 NGYRLGERVLQVSFKTSK 363
>RGD|1305015 [details] [associations]
symbol:Pabpc4 "poly(A) binding protein, cytoplasmic 4"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0008143
"poly(A) RNA binding" evidence=ISO] [GO:0008266 "poly(U) RNA
binding" evidence=ISO] [GO:0010494 "cytoplasmic stress granule"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=ISO]
[GO:0017130 "poly(C) RNA binding" evidence=ISO] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
RGD:1305015 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 Gene3D:1.10.1900.10
SUPFAM:SSF63570 EMBL:BC088337 IPI:IPI00780433 UniGene:Rn.201330
ProteinModelPortal:Q5I0G7 PRIDE:Q5I0G7 UCSC:RGD:1305015
InParanoid:Q5I0G7 ArrayExpress:Q5I0G7 Genevestigator:Q5I0G7
Uniprot:Q5I0G7
Length = 415
Score = 192 (72.6 bits), Expect = 7.2e-13, P = 7.2e-13
Identities = 44/126 (34%), Positives = 76/126 (60%)
Query: 90 KARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKV--------FVKNLVET 141
KA EMNG + K + + + K +R + + +Q K++++ ++KNL +T
Sbjct: 1 KAVEEMNGKEMSGKSIFVGRAQKKV-ERQAELKRKFEQLKQERISRYQGVNLYIKNLDDT 59
Query: 142 VDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNST 201
+D+E+L+ F FG+I K++ E+G+SKGFGF+ F S + A KA+ EMNGR++
Sbjct: 60 IDDEKLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPL 118
Query: 202 FVSLAE 207
+V+LA+
Sbjct: 119 YVALAQ 124
Score = 158 (60.7 bits), Expect = 7.4e-09, P = 7.4e-09
Identities = 28/82 (34%), Positives = 52/82 (63%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L++ NL+ ++D++ L EF FG++ +V ++ S+GF + F++P EA KA EMN
Sbjct: 51 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMN 109
Query: 97 GHLIGSKPVIITFVELKPGQRS 118
G ++GSKP+ + + K +++
Sbjct: 110 GRIVGSKPLYVALAQRKEERKA 131
Score = 148 (57.2 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 40/126 (31%), Positives = 65/126 (51%)
Query: 186 KAIIEMNGRMIQHNSTFVSLAEIXXXXXXXXXXXXXLLQPARKNK-----IFVANLPSNI 240
KA+ EMNG+ + S FV A+ L+ R ++ +++ NL I
Sbjct: 1 KAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTI 60
Query: 241 NNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
++ + + F+ FG+ITS+ ++ + K GF+ F P+ AT AV+ MNG + SKPL V
Sbjct: 61 DDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 120
Query: 297 TLSGTK 302
L+ K
Sbjct: 121 ALAQRK 126
>TAIR|locus:2094098 [details] [associations]
symbol:RBP47B "RNA-binding protein 47B" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0042991 "transcription
factor import into nucleus" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0034605 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
EMBL:AP000419 GO:GO:0010494 eggNOG:COG0724 HSSP:P09651
GO:GO:0008143 HOGENOM:HOG000186228 EMBL:AK226472 EMBL:BT026489
EMBL:AY084821 IPI:IPI00522174 IPI:IPI00785888 RefSeq:NP_188544.1
UniGene:At.8226 ProteinModelPortal:Q0WW84 SMR:Q0WW84 STRING:Q0WW84
PaxDb:Q0WW84 PRIDE:Q0WW84 EnsemblPlants:AT3G19130.1 GeneID:821447
KEGG:ath:AT3G19130 TAIR:At3g19130 InParanoid:Q0WW84 OMA:RAVENGP
PhylomeDB:Q0WW84 ProtClustDB:CLSN2913615 Genevestigator:Q0WW84
Uniprot:Q0WW84
Length = 435
Score = 147 (56.8 bits), Expect = 7.4e-13, Sum P(2) = 7.4e-13
Identities = 49/176 (27%), Positives = 83/176 (47%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L V +L +D L + F G + V+V RNK +S G+ + F + A A++
Sbjct: 110 LWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAAAEEVLQNY 169
Query: 96 NGHLI--GSKPVIITFVELKPGQ-RSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFI 152
+G ++ +P I + G+ R+ GP+ VFV +L V + L F
Sbjct: 170 SGSVMPNSDQPFRINWASFSTGEKRAVENGPDLS------VFVGDLSPDVTDVLLHETFS 223
Query: 153 -KFGNIIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLA 206
++ ++ K+V D N G+SKG+GF++F +A+ EMNG + V +A
Sbjct: 224 DRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGIA 279
Score = 136 (52.9 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 40/182 (21%), Positives = 87/182 (47%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEM 191
++V +L+ +DE L S F G + VK++R++ +S+G+GF++F S AAE+ +
Sbjct: 110 LWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAAAEEVLQNY 169
Query: 192 NGRMIQHNSTFVSLAEIXXXXXXXXXXXXXLLQPARKNKIFVANLPSNINNSEFEELFA- 250
+G ++ ++ ++ +FV +L ++ + E F+
Sbjct: 170 SGSVMPNSDQ-----PFRINWASFSTGEKRAVENGPDLSVFVGDLSPDVTDVLLHETFSD 224
Query: 251 RFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKPG 304
R+ ++ S+ +V D K GF+ F + A++ MNG ++ ++V ++ K
Sbjct: 225 RYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGIATPKRA 284
Query: 305 VS 306
++
Sbjct: 285 IA 286
Score = 90 (36.7 bits), Expect = 7.4e-13, Sum P(2) = 7.4e-13
Identities = 19/73 (26%), Positives = 38/73 (52%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSDKHIGFIEFIMPKHATHAVSTMNGHVFK 290
IFV + ++ + + + F++FG + S + K GF++F K A A+ ++NG V
Sbjct: 323 IFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVGKGCGFVQFADRKSAEDAIESLNGTVIG 382
Query: 291 SKPLKVTLSGTKP 303
++++ G P
Sbjct: 383 KNTVRLSW-GRSP 394
>UNIPROTKB|F1PVV1 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:AAEX03012413
Ensembl:ENSCAFT00000027494 Uniprot:F1PVV1
Length = 367
Score = 171 (65.3 bits), Expect = 1.7e-10, P = 1.7e-10
Identities = 51/172 (29%), Positives = 83/172 (48%)
Query: 130 KDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAI 188
K + V L + + ++E KS F G+I K+VRD+ G+S G+GF+ + A+KAI
Sbjct: 38 KTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAI 97
Query: 189 IEMNGRMIQHNSTFVSLAEIXXXXXXXXXXXXXLLQPARKNKIFVANLPSNINNSEFEEL 248
+NG +Q + VS A R ++V+ LP ++ E E+L
Sbjct: 98 NTLNGLKLQTKTIKVSYARPSSASI-------------RDANLYVSGLPKTMSQKEMEQL 144
Query: 249 FARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
F+++G I +S ++ D + +GFI F A A+ +NG KPL
Sbjct: 145 FSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ----KPL 192
Score = 149 (57.5 bits), Expect = 9.3e-13, Sum P(2) = 9.3e-13
Identities = 41/148 (27%), Positives = 80/148 (54%)
Query: 53 NEFKK-FGTLRDV---RVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVII 107
+EFK FG++ D+ ++ R+K +S G+ + ++ P +A KA +NG + +K + +
Sbjct: 53 DEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKV 112
Query: 108 TFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE- 166
++ P + ++V L +T+ ++E++ F ++G II +I+ D+
Sbjct: 113 SYAR-----------PSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQV 161
Query: 167 NGKSKGFGFIQFFSYKAAEKAIIEMNGR 194
G S+G GFI+F AE+AI +NG+
Sbjct: 162 TGVSRGVGFIRFDKRIEAEEAIKGLNGQ 189
Score = 115 (45.5 bits), Expect = 0.00046, P = 0.00046
Identities = 26/62 (41%), Positives = 33/62 (53%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRD-ENGKSKGFGFIQFFSYKAAEKAIIEM 191
+FV NL DE L F FG + VK++RD K KGFGF+ +Y A AI +
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 192 NG 193
NG
Sbjct: 346 NG 347
Score = 114 (45.2 bits), Expect = 0.00060, P = 0.00060
Identities = 27/76 (35%), Positives = 39/76 (51%)
Query: 228 KNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDK------HIGFIEFIMPKHATHAV 281
K + V LP N+ EF+ LF G I S LV DK GF+ + P A A+
Sbjct: 38 KTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAI 97
Query: 282 STMNGHVFKSKPLKVT 297
+T+NG ++K +KV+
Sbjct: 98 NTLNGLKLQTKTIKVS 113
Score = 84 (34.6 bits), Expect = 9.3e-13, Sum P(2) = 9.3e-13
Identities = 22/78 (28%), Positives = 38/78 (48%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTM 284
IFV NL + S +LF FG +T+ ++ D K GF+ A A++++
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 285 NGHVFKSKPLKVTLSGTK 302
NG+ + L+V+ +K
Sbjct: 346 NGYRLGERVLQVSFKTSK 363
>UNIPROTKB|Q14576 [details] [associations]
symbol:ELAVL3 "ELAV-like protein 3" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0007399
"nervous system development" evidence=IEA] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IDA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0007399 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
KO:K13208 EMBL:L26405 EMBL:AY036909 EMBL:AC008481 EMBL:BC014144
EMBL:D26158 IPI:IPI00031552 IPI:IPI00140449 RefSeq:NP_001411.2
RefSeq:NP_115657.2 UniGene:Hs.1701 ProteinModelPortal:Q14576
SMR:Q14576 IntAct:Q14576 MINT:MINT-1471958 STRING:Q14576
PhosphoSite:Q14576 DMDM:21264436 PaxDb:Q14576 PRIDE:Q14576
Ensembl:ENST00000359227 Ensembl:ENST00000438662 GeneID:1995
KEGG:hsa:1995 UCSC:uc002mrx.1 UCSC:uc002mry.1 CTD:1995
GeneCards:GC19M011562 HGNC:HGNC:3314 HPA:CAB013066 MIM:603458
neXtProt:NX_Q14576 PharmGKB:PA27742 InParanoid:Q14576 OMA:ARRYTGP
PhylomeDB:Q14576 ChiTaRS:ELAVL3 GenomeRNAi:1995 NextBio:8067
ArrayExpress:Q14576 Bgee:Q14576 CleanEx:HS_ELAVL3
Genevestigator:Q14576 GermOnline:ENSG00000196361 Uniprot:Q14576
Length = 367
Score = 171 (65.3 bits), Expect = 1.7e-10, P = 1.7e-10
Identities = 51/172 (29%), Positives = 83/172 (48%)
Query: 130 KDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAI 188
K + V L + + ++E KS F G+I K+VRD+ G+S G+GF+ + A+KAI
Sbjct: 38 KTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAI 97
Query: 189 IEMNGRMIQHNSTFVSLAEIXXXXXXXXXXXXXLLQPARKNKIFVANLPSNINNSEFEEL 248
+NG +Q + VS A R ++V+ LP ++ E E+L
Sbjct: 98 NTLNGLKLQTKTIKVSYARPSSASI-------------RDANLYVSGLPKTMSQKEMEQL 144
Query: 249 FARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
F+++G I +S ++ D + +GFI F A A+ +NG KPL
Sbjct: 145 FSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ----KPL 192
Score = 149 (57.5 bits), Expect = 9.3e-13, Sum P(2) = 9.3e-13
Identities = 41/148 (27%), Positives = 80/148 (54%)
Query: 53 NEFKK-FGTLRDV---RVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVII 107
+EFK FG++ D+ ++ R+K +S G+ + ++ P +A KA +NG + +K + +
Sbjct: 53 DEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKV 112
Query: 108 TFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE- 166
++ P + ++V L +T+ ++E++ F ++G II +I+ D+
Sbjct: 113 SYAR-----------PSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQV 161
Query: 167 NGKSKGFGFIQFFSYKAAEKAIIEMNGR 194
G S+G GFI+F AE+AI +NG+
Sbjct: 162 TGVSRGVGFIRFDKRIEAEEAIKGLNGQ 189
Score = 115 (45.5 bits), Expect = 0.00046, P = 0.00046
Identities = 26/62 (41%), Positives = 33/62 (53%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRD-ENGKSKGFGFIQFFSYKAAEKAIIEM 191
+FV NL DE L F FG + VK++RD K KGFGF+ +Y A AI +
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 192 NG 193
NG
Sbjct: 346 NG 347
Score = 114 (45.2 bits), Expect = 0.00060, P = 0.00060
Identities = 27/76 (35%), Positives = 39/76 (51%)
Query: 228 KNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDK------HIGFIEFIMPKHATHAV 281
K + V LP N+ EF+ LF G I S LV DK GF+ + P A A+
Sbjct: 38 KTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAI 97
Query: 282 STMNGHVFKSKPLKVT 297
+T+NG ++K +KV+
Sbjct: 98 NTLNGLKLQTKTIKVS 113
Score = 84 (34.6 bits), Expect = 9.3e-13, Sum P(2) = 9.3e-13
Identities = 22/78 (28%), Positives = 38/78 (48%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTM 284
IFV NL + S +LF FG +T+ ++ D K GF+ A A++++
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 285 NGHVFKSKPLKVTLSGTK 302
NG+ + L+V+ +K
Sbjct: 346 NGYRLGERVLQVSFKTSK 363
>UNIPROTKB|F1SA16 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:CU855518
Ensembl:ENSSSCT00000014872 Uniprot:F1SA16
Length = 367
Score = 171 (65.3 bits), Expect = 1.7e-10, P = 1.7e-10
Identities = 51/172 (29%), Positives = 83/172 (48%)
Query: 130 KDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAI 188
K + V L + + ++E KS F G+I K+VRD+ G+S G+GF+ + A+KAI
Sbjct: 38 KTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAI 97
Query: 189 IEMNGRMIQHNSTFVSLAEIXXXXXXXXXXXXXLLQPARKNKIFVANLPSNINNSEFEEL 248
+NG +Q + VS A R ++V+ LP ++ E E+L
Sbjct: 98 NTLNGLKLQTKTIKVSYARPSSASI-------------RDANLYVSGLPKTMSQKEMEQL 144
Query: 249 FARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
F+++G I +S ++ D + +GFI F A A+ +NG KPL
Sbjct: 145 FSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ----KPL 192
Score = 149 (57.5 bits), Expect = 9.3e-13, Sum P(2) = 9.3e-13
Identities = 41/148 (27%), Positives = 80/148 (54%)
Query: 53 NEFKK-FGTLRDV---RVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVII 107
+EFK FG++ D+ ++ R+K +S G+ + ++ P +A KA +NG + +K + +
Sbjct: 53 DEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKV 112
Query: 108 TFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE- 166
++ P + ++V L +T+ ++E++ F ++G II +I+ D+
Sbjct: 113 SYAR-----------PSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQV 161
Query: 167 NGKSKGFGFIQFFSYKAAEKAIIEMNGR 194
G S+G GFI+F AE+AI +NG+
Sbjct: 162 TGVSRGVGFIRFDKRIEAEEAIKGLNGQ 189
Score = 115 (45.5 bits), Expect = 0.00046, P = 0.00046
Identities = 26/62 (41%), Positives = 33/62 (53%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRD-ENGKSKGFGFIQFFSYKAAEKAIIEM 191
+FV NL DE L F FG + VK++RD K KGFGF+ +Y A AI +
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 192 NG 193
NG
Sbjct: 346 NG 347
Score = 114 (45.2 bits), Expect = 0.00060, P = 0.00060
Identities = 27/76 (35%), Positives = 39/76 (51%)
Query: 228 KNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDK------HIGFIEFIMPKHATHAV 281
K + V LP N+ EF+ LF G I S LV DK GF+ + P A A+
Sbjct: 38 KTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAI 97
Query: 282 STMNGHVFKSKPLKVT 297
+T+NG ++K +KV+
Sbjct: 98 NTLNGLKLQTKTIKVS 113
Score = 84 (34.6 bits), Expect = 9.3e-13, Sum P(2) = 9.3e-13
Identities = 22/78 (28%), Positives = 38/78 (48%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTM 284
IFV NL + S +LF FG +T+ ++ D K GF+ A A++++
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 285 NGHVFKSKPLKVTLSGTK 302
NG+ + L+V+ +K
Sbjct: 346 NGYRLGERVLQVSFKTSK 363
>UNIPROTKB|F1N4V6 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:DAAA02019487
IPI:IPI00710891 Ensembl:ENSBTAT00000019169 Uniprot:F1N4V6
Length = 368
Score = 171 (65.3 bits), Expect = 1.7e-10, P = 1.7e-10
Identities = 51/172 (29%), Positives = 83/172 (48%)
Query: 130 KDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAI 188
K + V L + + ++E KS F G+I K+VRD+ G+S G+GF+ + A+KAI
Sbjct: 38 KTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAI 97
Query: 189 IEMNGRMIQHNSTFVSLAEIXXXXXXXXXXXXXLLQPARKNKIFVANLPSNINNSEFEEL 248
+NG +Q + VS A R ++V+ LP ++ E E+L
Sbjct: 98 NTLNGLKLQTKTIKVSYARPSSASI-------------RDANLYVSGLPKTMSQKEMEQL 144
Query: 249 FARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
F+++G I +S ++ D + +GFI F A A+ +NG KPL
Sbjct: 145 FSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ----KPL 192
Score = 149 (57.5 bits), Expect = 9.4e-13, Sum P(2) = 9.4e-13
Identities = 41/148 (27%), Positives = 80/148 (54%)
Query: 53 NEFKK-FGTLRDV---RVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVII 107
+EFK FG++ D+ ++ R+K +S G+ + ++ P +A KA +NG + +K + +
Sbjct: 53 DEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKV 112
Query: 108 TFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE- 166
++ P + ++V L +T+ ++E++ F ++G II +I+ D+
Sbjct: 113 SYAR-----------PSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQV 161
Query: 167 NGKSKGFGFIQFFSYKAAEKAIIEMNGR 194
G S+G GFI+F AE+AI +NG+
Sbjct: 162 TGVSRGVGFIRFDKRIEAEEAIKGLNGQ 189
Score = 115 (45.5 bits), Expect = 0.00046, P = 0.00046
Identities = 26/62 (41%), Positives = 33/62 (53%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRD-ENGKSKGFGFIQFFSYKAAEKAIIEM 191
+FV NL DE L F FG + VK++RD K KGFGF+ +Y A AI +
Sbjct: 287 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 346
Query: 192 NG 193
NG
Sbjct: 347 NG 348
Score = 114 (45.2 bits), Expect = 0.00060, P = 0.00060
Identities = 27/76 (35%), Positives = 39/76 (51%)
Query: 228 KNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDK------HIGFIEFIMPKHATHAV 281
K + V LP N+ EF+ LF G I S LV DK GF+ + P A A+
Sbjct: 38 KTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAI 97
Query: 282 STMNGHVFKSKPLKVT 297
+T+NG ++K +KV+
Sbjct: 98 NTLNGLKLQTKTIKVS 113
Score = 84 (34.6 bits), Expect = 9.4e-13, Sum P(2) = 9.4e-13
Identities = 22/78 (28%), Positives = 38/78 (48%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTM 284
IFV NL + S +LF FG +T+ ++ D K GF+ A A++++
Sbjct: 287 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 346
Query: 285 NGHVFKSKPLKVTLSGTK 302
NG+ + L+V+ +K
Sbjct: 347 NGYRLGERVLQVSFKTSK 364
>UNIPROTKB|Q9LEB3 [details] [associations]
symbol:RBP47 "Polyadenylate-binding protein RBP47"
species:4092 "Nicotiana plumbaginifolia" [GO:0005634 "nucleus"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0034605
"cellular response to heat" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0034605 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0010494 GO:GO:0008143 HSSP:P33240
EMBL:AJ292768 ProteinModelPortal:Q9LEB3 Uniprot:Q9LEB3
Length = 428
Score = 191 (72.3 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 67/288 (23%), Positives = 126/288 (43%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKND-ESRGFAIIVFNTPAEAKKARVEMNG 97
+ +L+ +D L + F + G + V++ RNK +S + + FNT A A+K NG
Sbjct: 88 IGDLQQWMDESYLHSCFSQAGEVISVKIIRNKQTGQSERYGFVEFNTHAAAEKVLQSYNG 147
Query: 98 HLIGS--KPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFI-KF 154
++ + +P + + G++ G + +FV +L V + L+ F ++
Sbjct: 148 TMMPNTEQPFRLNWAGFSTGEKRAETGSDFS------IFVGDLASDVTDTMLRDTFASRY 201
Query: 155 GNIIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAIIEMNG-----RMIQ----------H 198
++ K+V D N G SKG+GF++F +A+ EMNG R ++
Sbjct: 202 PSLKGAKVVVDANTGHSKGYGFVRFGDESERSRAMTEMNGVYCSSRAMRIGVATPKKPSA 261
Query: 199 NSTFVSLAEIXXXXXXXXXXXXXLLQP---ARKNKIFVANLPSNINNSEFEELFARFGTI 255
+ + S A I Q + IFV L S + + E + F +FG +
Sbjct: 262 HEQYSSQAVILSGGYASNGAATHGSQSDGDSSNTTIFVGGLDSEVTDEELRQSFNQFGEV 321
Query: 256 TSSSLVSDKHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKP 303
S + + K GF++F A A+ ++G + + ++++ G P
Sbjct: 322 VSVKIPAGKGCGFVQFSDRSSAQEAIQKLSGAIIGKQAVRLSW-GRSP 368
Score = 156 (60.0 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 45/178 (25%), Positives = 88/178 (49%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRD-ENGKSKGFGFIQFFSYKAAEKAIIEM 191
+++ +L + +DE L S F + G +I VKI+R+ + G+S+ +GF++F ++ AAEK +
Sbjct: 86 IWIGDLQQWMDESYLHSCFSQAGEVISVKIIRNKQTGQSERYGFVEFNTHAAAEKVLQSY 145
Query: 192 NGRMIQHNSTFVSLAEIXXXXXXXXXXXXXLLQPARKNKIFVANLPSNINNSEFEELFA- 250
NG M+ + L + IFV +L S++ ++ + FA
Sbjct: 146 NGTMMPNTEQPFRL------NWAGFSTGEKRAETGSDFSIFVGDLASDVTDTMLRDTFAS 199
Query: 251 RFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
R+ ++ + +V D K GF+ F + A++ MNG S+ +++ ++ K
Sbjct: 200 RYPSLKGAKVVVDANTGHSKGYGFVRFGDESERSRAMTEMNGVYCSSRAMRIGVATPK 257
>UNIPROTKB|Q5U259 [details] [associations]
symbol:elavl1-b "ELAV-like protein 1-B" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005938 "cell cortex" evidence=IDA] [GO:0007369
"gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA binding"
evidence=ISS] [GO:0008298 "intracellular mRNA localization"
evidence=IMP] [GO:0030529 "ribonucleoprotein complex" evidence=IPI]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0051259 "protein
oligomerization" evidence=ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005634 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0030529
GO:GO:0008298 GO:GO:0007369 HOVERGEN:HBG002295 KO:K13088
TIGRFAMs:TIGR01661 EMBL:BC086269 RefSeq:NP_001088628.1
UniGene:Xl.22886 ProteinModelPortal:Q5U259 SMR:Q5U259 PRIDE:Q5U259
GeneID:495680 KEGG:xla:495680 CTD:495680 Xenbase:XB-GENE-865489
Uniprot:Q5U259
Length = 326
Score = 169 (64.5 bits), Expect = 2.0e-10, P = 2.0e-10
Identities = 47/176 (26%), Positives = 85/176 (48%)
Query: 130 KDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAI 188
+ + V L + + ++EL+S F G + K++RD+ G S G+GF+ + + K AE+AI
Sbjct: 19 RTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAI 78
Query: 189 IEMNGRMIQHNSTFVSLAEIXXXXXXXXXXXXXLLQPARKNKIFVANLPSNINNSEFEEL 248
+NG +Q + VS A + + ++++ LP + + E++
Sbjct: 79 NTLNGLRLQSKTIKVSFARPSS-------------ETIKDANLYISGLPRTMTQKDVEDM 125
Query: 249 FARFGTITSSSLVSDKHIG------FIEFIMPKHATHAVSTMNGHV--FKSKPLKV 296
F FG I +S ++ D+ G FI F A A+++ NGH S+P+ V
Sbjct: 126 FLPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNGHKPPGSSEPITV 181
Score = 146 (56.5 bits), Expect = 1.6e-12, Sum P(2) = 1.6e-12
Identities = 40/159 (25%), Positives = 77/159 (48%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L VN L ++ L + F G + ++ R+K S G+ + + +A++A +
Sbjct: 22 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINTL 81
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
NG + SK + ++F P + K +++ L T+ +++++ F+ FG
Sbjct: 82 NGLRLQSKTIKVSFAR-----------PSSETIKDANLYISGLPRTMTQKDVEDMFLPFG 130
Query: 156 NIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEMNG 193
+II +++ D+ G S+G FI+F AE+AI NG
Sbjct: 131 HIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNG 169
Score = 121 (47.7 bits), Expect = 6.6e-09, Sum P(2) = 6.6e-09
Identities = 28/73 (38%), Positives = 40/73 (54%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAIIEM 191
+F+ NL + DE L F FG + VK++RD N K KGFGF+ +Y+ A AI +
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 192 NGRMIQHNSTFVS 204
NG + + VS
Sbjct: 306 NGYRLGDKTLQVS 318
Score = 114 (45.2 bits), Expect = 0.00048, P = 0.00048
Identities = 25/78 (32%), Positives = 42/78 (53%)
Query: 228 KNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDK---H---IGFIEFIMPKHATHAV 281
+ + V LP N+ E LF+ G + S+ L+ DK H GF+ ++ K A A+
Sbjct: 19 RTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAI 78
Query: 282 STMNGHVFKSKPLKVTLS 299
+T+NG +SK +KV+ +
Sbjct: 79 NTLNGLRLQSKTIKVSFA 96
Score = 83 (34.3 bits), Expect = 1.6e-12, Sum P(2) = 1.6e-12
Identities = 20/78 (25%), Positives = 39/78 (50%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTM 284
IF+ NL + + ++F FG +T+ ++ D K GF+ + A A++++
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 285 NGHVFKSKPLKVTLSGTK 302
NG+ K L+V+ +K
Sbjct: 306 NGYRLGDKTLQVSFKTSK 323
Score = 77 (32.2 bits), Expect = 6.6e-09, Sum P(2) = 6.6e-09
Identities = 24/83 (28%), Positives = 43/83 (51%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+++ L ++ + + + F FG + + RV ++ SRG A I F+ +EA++A
Sbjct: 108 LYISGLPRTMTQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASF 167
Query: 96 NGHLI--GSKPVIITFVELKPGQ 116
NGH S+P+ + F P Q
Sbjct: 168 NGHKPPGSSEPITVKFAA-NPNQ 189
>TAIR|locus:2133862 [details] [associations]
symbol:AT4G26650 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0042732 "D-xylose
metabolic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 HSSP:Q61474 EMBL:AF419605 EMBL:AY097345 IPI:IPI00533249
RefSeq:NP_567753.1 UniGene:At.20416 UniGene:At.67937
ProteinModelPortal:Q8W569 SMR:Q8W569 STRING:Q8W569 PRIDE:Q8W569
EnsemblPlants:AT4G26650.1 GeneID:828772 KEGG:ath:AT4G26650
TAIR:At4g26650 InParanoid:Q8W569 OMA:LVEAVIM PhylomeDB:Q8W569
ProtClustDB:CLSN2689626 Genevestigator:Q8W569 Uniprot:Q8W569
Length = 455
Score = 190 (71.9 bits), Expect = 1.6e-12, P = 1.6e-12
Identities = 62/216 (28%), Positives = 104/216 (48%)
Query: 121 VGPEEKQYKK--D--KVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDEN-GKSKGFGF 175
+ PEE++ + D K+F+ + DEE L+ +F K+G+++E I+RD G+++GFGF
Sbjct: 1 MNPEEQKMESASDLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGF 60
Query: 176 IQFFSYKAAEKAIIE---MNGRMIQHNSTFVSLAEIXXXXXXXXXXXXXLLQP------- 225
I F AE+ I++ ++GR ++ ++ L+ P
Sbjct: 61 IVFADPSVAERVIMDKHIIDGRTVEAKK---AVPRDDQQVLKRHASPMHLISPSHGGNGG 117
Query: 226 -ARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKH------IGFIEFIMPKHAT 278
AR KIFV LPS+I +EF+ F +FGTI ++ D + GFI F + +
Sbjct: 118 GARTKKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDS-EESV 176
Query: 279 HAVSTMNGHVFKSKPLKVTLSGTKPGVSITNPTKAP 314
V H K ++V + K +S T P ++P
Sbjct: 177 DMVLHKTFHELNGKMVEVKRAVPKE-LSSTTPNRSP 211
Score = 165 (63.1 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 51/179 (28%), Positives = 88/179 (49%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKND-ESRGFAIIVFNTPAEAKKARVEM 95
L + + D + L F K+G L + + R++ +RGF IVF P+ A+ RV M
Sbjct: 17 LFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAE--RVIM 74
Query: 96 NGHLIGSKPVIITFVELKPGQR-----SKPV-------GPEEKQYKKDKVFVKNLVETVD 143
+ H+I + V + Q+ + P+ G + K+FV L ++
Sbjct: 75 DKHIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGARTKKIFVGGLPSSIT 134
Query: 144 EEELKSHFIKFGNIIEVKIVRDENG-KSKGFGFIQFFSYKAAE----KAIIEMNGRMIQ 197
E E K++F +FG I +V ++ D N + +GFGFI F S ++ + K E+NG+M++
Sbjct: 135 EAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFHELNGKMVE 193
>TAIR|locus:2200975 [details] [associations]
symbol:AT1G01080 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0006655
"phosphatidylglycerol biosynthetic process" evidence=RCA]
[GO:0010103 "stomatal complex morphogenesis" evidence=RCA]
[GO:0019288 "isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0005634 GO:GO:0009570 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0009941 GO:GO:0003676 IPI:IPI00657321
RefSeq:NP_001030925.1 UniGene:At.26684 ProteinModelPortal:F4HQH8
SMR:F4HQH8 PRIDE:F4HQH8 EnsemblPlants:AT1G01080.2 GeneID:839463
KEGG:ath:AT1G01080 OMA:MRVRYSV PhylomeDB:F4HQH8 Uniprot:F4HQH8
Length = 294
Score = 184 (69.8 bits), Expect = 1.8e-12, P = 1.8e-12
Identities = 51/167 (30%), Positives = 89/167 (53%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRV-ARN-KNDESRGFAIIVFNTPAEAKKARVE 94
L+V N+ S D L++ F+ FGT+ V V +RN + ESRG + + AK A
Sbjct: 110 LYVCNIPRSYDIAQLLDMFQPFGTVISVEVVSRNPQTGESRGSGYVTMGSINSAKIAIAS 169
Query: 95 MNGHLIGSKPVIITF-VELKPGQRSKP--VGPEEKQ---YKKD-KVFVKNLVETVDEEEL 147
++G +G + + + + V++ PG R P + K+ Y+ KV+V NL + L
Sbjct: 170 LDGTEVGGREMRVRYSVDMNPGTRRNPEVLNSTPKKILMYESQHKVYVGNLPWFTQPDGL 229
Query: 148 KSHFIKFGNIIEVKIVRD-ENGKSKGFGFIQFFSYKAAEKAIIEMNG 193
++HF KFG I+ +++ D + G+++ F F+ F S + + A+ NG
Sbjct: 230 RNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAAL-SFNG 275
Score = 121 (47.7 bits), Expect = 6.1e-05, P = 6.1e-05
Identities = 47/200 (23%), Positives = 90/200 (45%)
Query: 111 ELKPGQRSKPVGPEE-KQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIV-RD-EN 167
E +P + S E K+ + +++V N+ + D +L F FG +I V++V R+ +
Sbjct: 87 EAEPNKDSVVSKAEPVKKPRPCELYVCNIPRSYDIAQLLDMFQPFGTVISVEVVSRNPQT 146
Query: 168 GKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE-----IXXXXXXXXXXXXXL 222
G+S+G G++ S +A+ AI ++G + V + +
Sbjct: 147 GESRGSGYVTMGSINSAKIAIASLDGTEVGGREMRVRYSVDMNPGTRRNPEVLNSTPKKI 206
Query: 223 LQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKHIG------FIEFIMPKH 276
L ++K++V NLP F++FGTI S+ ++ D+ G F+ F +
Sbjct: 207 LMYESQHKVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEE 266
Query: 277 ATHAVSTMNGHVFKSKPLKV 296
A+S NG ++ + + V
Sbjct: 267 RDAALS-FNGTQYEGRRIIV 285
>MGI|MGI:1100851 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision)-like
1 (Hu antigen R)" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006417 "regulation of translation" evidence=ISO] [GO:0017091
"AU-rich element binding" evidence=ISO] [GO:0019901 "protein kinase
binding" evidence=ISO] [GO:0035925 "mRNA 3'-UTR AU-rich region
binding" evidence=ISO] [GO:0045727 "positive regulation of
translation" evidence=ISO;IMP;IDA] [GO:0048255 "mRNA stabilization"
evidence=ISO;IMP] [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=ISO] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1100851 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
GO:GO:0045727 EMBL:CH466566 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:U65735 EMBL:AK080365
EMBL:U17595 IPI:IPI00108271 PIR:I49144 RefSeq:NP_034615.2
UniGene:Mm.119162 HSSP:P26378 ProteinModelPortal:P70372 SMR:P70372
DIP:DIP-46480N MINT:MINT-4094207 STRING:P70372 PhosphoSite:P70372
PaxDb:P70372 PRIDE:P70372 Ensembl:ENSMUST00000098950 GeneID:15568
KEGG:mmu:15568 GeneTree:ENSGT00560000077064 InParanoid:P70372
OMA:YANRACA ChiTaRS:ELAVL1 NextBio:288542 Bgee:P70372
Genevestigator:P70372 GermOnline:ENSMUSG00000040028 Uniprot:P70372
Length = 326
Score = 182 (69.1 bits), Expect = 5.5e-12, P = 5.5e-12
Identities = 50/176 (28%), Positives = 89/176 (50%)
Query: 130 KDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAI 188
+ + V L + + +EEL+S F G + K++RD+ G S G+GF+ + + K AE+AI
Sbjct: 19 RTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAI 78
Query: 189 IEMNGRMIQHNSTFVSLAEIXXXXXXXXXXXXXLLQPARKNKIFVANLPSNINNSEFEEL 248
+NG +Q + VS A +++ A ++++ LP + + E++
Sbjct: 79 STLNGLRLQSKTIKVSYAR----------PSSEVIKDAN---LYISGLPRTMTQKDVEDM 125
Query: 249 FARFGTITSSSLVSDKHIG------FIEFIMPKHATHAVSTMNGHV--FKSKPLKV 296
F+RFG I +S ++ D+ G FI F A A+++ NGH S+P+ V
Sbjct: 126 FSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITV 181
Score = 148 (57.2 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
Identities = 40/159 (25%), Positives = 78/159 (49%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L VN L ++ + L + F G + ++ R+K S G+ + + T +A++A +
Sbjct: 22 LIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAISTL 81
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
NG + SK + +++ P + K +++ L T+ +++++ F +FG
Sbjct: 82 NGLRLQSKTIKVSYAR-----------PSSEVIKDANLYISGLPRTMTQKDVEDMFSRFG 130
Query: 156 NIIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAIIEMNG 193
II +++ D+ G S+G FI+F AE+AI NG
Sbjct: 131 RIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 169
Score = 120 (47.3 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 26/62 (41%), Positives = 36/62 (58%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAIIEM 191
+F+ NL + DE L F FG + VK++RD N K KGFGF+ +Y+ A AI +
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 192 NG 193
NG
Sbjct: 306 NG 307
Score = 118 (46.6 bits), Expect = 0.00017, P = 0.00017
Identities = 26/76 (34%), Positives = 41/76 (53%)
Query: 228 KNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDK---H---IGFIEFIMPKHATHAV 281
+ + V LP N+ E LF+ G + S+ L+ DK H GF+ ++ K A A+
Sbjct: 19 RTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAI 78
Query: 282 STMNGHVFKSKPLKVT 297
ST+NG +SK +KV+
Sbjct: 79 STLNGLRLQSKTIKVS 94
Score = 84 (34.6 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 24/83 (28%), Positives = 44/83 (53%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDE-SRGFAIIVFNTPAEAKKARVEM 95
L+++ L ++ + + + F +FG + + RV ++ SRG A I F+ +EA++A
Sbjct: 108 LYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSF 167
Query: 96 NGHLI--GSKPVIITFVELKPGQ 116
NGH S+P+ + F P Q
Sbjct: 168 NGHKPPGSSEPITVKFAA-NPNQ 189
Score = 80 (33.2 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
Identities = 20/78 (25%), Positives = 38/78 (48%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTM 284
IF+ NL + + ++F FG +T+ ++ D K GF+ + A A++++
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 285 NGHVFKSKPLKVTLSGTK 302
NG+ K L+V+ K
Sbjct: 306 NGYRLGDKILQVSFKTNK 323
>RGD|1308649 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006417 "regulation of
translation" evidence=ISO] [GO:0017091 "AU-rich element binding"
evidence=ISO] [GO:0019901 "protein kinase binding" evidence=ISO]
[GO:0035925 "mRNA 3'-UTR AU-rich region binding" evidence=ISO]
[GO:0045727 "positive regulation of translation" evidence=IEA;ISO]
[GO:0048255 "mRNA stabilization" evidence=ISO] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1308649 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003730 eggNOG:COG0724 HOVERGEN:HBG002295 CTD:1994
HOGENOM:HOG000231162 KO:K13088 OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:CH474084
EMBL:BC168972 EMBL:AB212679 IPI:IPI00869767 RefSeq:NP_001102318.1
UniGene:Rn.216517 SMR:B5DF91 STRING:B5DF91
Ensembl:ENSRNOT00000001415 GeneID:363854 KEGG:rno:363854
UCSC:RGD:1308649 NextBio:684342 Genevestigator:B5DF91
Uniprot:B5DF91
Length = 326
Score = 182 (69.1 bits), Expect = 5.5e-12, P = 5.5e-12
Identities = 50/176 (28%), Positives = 89/176 (50%)
Query: 130 KDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAI 188
+ + V L + + +EEL+S F G + K++RD+ G S G+GF+ + + K AE+AI
Sbjct: 19 RTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAI 78
Query: 189 IEMNGRMIQHNSTFVSLAEIXXXXXXXXXXXXXLLQPARKNKIFVANLPSNINNSEFEEL 248
+NG +Q + VS A +++ A ++++ LP + + E++
Sbjct: 79 STLNGLRLQSKTIKVSYAR----------PSSEVIKDAN---LYISGLPRTMTQKDVEDM 125
Query: 249 FARFGTITSSSLVSDKHIG------FIEFIMPKHATHAVSTMNGHV--FKSKPLKV 296
F+RFG I +S ++ D+ G FI F A A+++ NGH S+P+ V
Sbjct: 126 FSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITV 181
Score = 148 (57.2 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
Identities = 40/159 (25%), Positives = 78/159 (49%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L VN L ++ + L + F G + ++ R+K S G+ + + T +A++A +
Sbjct: 22 LIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAISTL 81
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
NG + SK + +++ P + K +++ L T+ +++++ F +FG
Sbjct: 82 NGLRLQSKTIKVSYAR-----------PSSEVIKDANLYISGLPRTMTQKDVEDMFSRFG 130
Query: 156 NIIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAIIEMNG 193
II +++ D+ G S+G FI+F AE+AI NG
Sbjct: 131 RIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 169
Score = 120 (47.3 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 26/62 (41%), Positives = 36/62 (58%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAIIEM 191
+F+ NL + DE L F FG + VK++RD N K KGFGF+ +Y+ A AI +
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 192 NG 193
NG
Sbjct: 306 NG 307
Score = 118 (46.6 bits), Expect = 0.00017, P = 0.00017
Identities = 26/76 (34%), Positives = 41/76 (53%)
Query: 228 KNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDK---H---IGFIEFIMPKHATHAV 281
+ + V LP N+ E LF+ G + S+ L+ DK H GF+ ++ K A A+
Sbjct: 19 RTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAI 78
Query: 282 STMNGHVFKSKPLKVT 297
ST+NG +SK +KV+
Sbjct: 79 STLNGLRLQSKTIKVS 94
Score = 84 (34.6 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 24/83 (28%), Positives = 44/83 (53%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDE-SRGFAIIVFNTPAEAKKARVEM 95
L+++ L ++ + + + F +FG + + RV ++ SRG A I F+ +EA++A
Sbjct: 108 LYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSF 167
Query: 96 NGHLI--GSKPVIITFVELKPGQ 116
NGH S+P+ + F P Q
Sbjct: 168 NGHKPPGSSEPITVKFAA-NPNQ 189
Score = 80 (33.2 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
Identities = 20/78 (25%), Positives = 38/78 (48%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTM 284
IF+ NL + + ++F FG +T+ ++ D K GF+ + A A++++
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 285 NGHVFKSKPLKVTLSGTK 302
NG+ K L+V+ K
Sbjct: 306 NGYRLGDKILQVSFKTNK 323
>DICTYBASE|DDB_G0291486 [details] [associations]
symbol:DDB_G0291486 "putative splicing regulator"
species:44689 "Dictyostelium discoideum" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0291486 EMBL:AAFI02000177
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:NOG251494
RefSeq:XP_635247.1 ProteinModelPortal:Q54EJ3
EnsemblProtists:DDB0233674 GeneID:8628193 KEGG:ddi:DDB_G0291486
InParanoid:Q54EJ3 OMA:PMGNGMN Uniprot:Q54EJ3
Length = 489
Score = 131 (51.2 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
Identities = 43/160 (26%), Positives = 79/160 (49%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKN-DESRGFAIIVFNTPAEAKKARVEM 95
L V + S + + + N F + V + +NK +E +G A + + EA +A +E
Sbjct: 5 LFVGQIPKSFNEEEIKNLFTNIANIESVSLIKNKTTNEPQGCAFVSVPSREEADRA-IEQ 63
Query: 96 NGHLIGSKPV--IITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIK 153
L SK ++ +++K E++ K+FV L + +EE+++ F
Sbjct: 64 ---LHNSKKFQGVLNNLQVK-------YADSEQEKLASKLFVGMLPRSYEEEQIRELFEP 113
Query: 154 FGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNG 193
G + ++ I+R N +SKG GFI+F + ++A AI +NG
Sbjct: 114 HGVVEDICILRGPNSESKGCGFIKFDNRESALSAIATLNG 153
Score = 124 (48.7 bits), Expect = 7.1e-05, P = 7.1e-05
Identities = 41/168 (24%), Positives = 74/168 (44%)
Query: 132 KVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAIIE 190
K+FV + ++ +EEE+K+ F NI V +++++ + +G F+ S + A++AI +
Sbjct: 4 KLFVGQIPKSFNEEEIKNLFTNIANIESVSLIKNKTTNEPQGCAFVSVPSREEADRAIEQ 63
Query: 191 MNGRMIQHNSTFVSLAEIXXXXXXXXXXXXXLLQPARKNKIFVANLPSNINNSEFEELFA 250
+ HNS + Q +K+FV LP + + ELF
Sbjct: 64 L------HNSK-----KFQGVLNNLQVKYADSEQEKLASKLFVGMLPRSYEEEQIRELFE 112
Query: 251 RFGTITSSSLV-----SDKHIGFIEFIMPKHATHAVSTMNGHVFKSKP 293
G + ++ K GFI+F + A A++T+NG P
Sbjct: 113 PHGVVEDICILRGPNSESKGCGFIKFDNRESALSAIATLNGMKLDGSP 160
Score = 111 (44.1 bits), Expect = 6.4e-09, Sum P(2) = 6.4e-09
Identities = 27/93 (29%), Positives = 51/93 (54%)
Query: 116 QRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDEN-GKSKGFG 174
++++ VGP+ +FV N+ + +L F ++G ++ K+ D+N G SKGFG
Sbjct: 393 KKNQSVGPQGSN-----LFVYNIPNYFSDNDLLGLFQQYGIVVSAKVYVDKNTGVSKGFG 447
Query: 175 FIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
F+ + + +A AI ++G+M+ VSL +
Sbjct: 448 FVSYDNPASANLAISNLHGQMMAGKKLKVSLKQ 480
Score = 106 (42.4 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
Identities = 23/79 (29%), Positives = 44/79 (55%)
Query: 229 NKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKH------IGFIEFIMPKHATHAVS 282
+ +FV N+P+ ++++ LF ++G + S+ + DK+ GF+ + P A A+S
Sbjct: 403 SNLFVYNIPNYFSDNDLLGLFQQYGIVVSAKVYVDKNTGVSKGFGFVSYDNPASANLAIS 462
Query: 283 TMNGHVFKSKPLKVTLSGT 301
++G + K LKV+L T
Sbjct: 463 NLHGQMMAGKKLKVSLKQT 481
Score = 94 (38.1 bits), Expect = 6.4e-09, Sum P(2) = 6.4e-09
Identities = 24/85 (28%), Positives = 41/85 (48%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L V L S + + + F+ G + D+ + R N ES+G I F+ A A +N
Sbjct: 93 LFVGMLPRSYEEEQIRELFEPHGVVEDICILRGPNSESKGCGFIKFDNRESALSAIATLN 152
Query: 97 G-HLIGS-KPVIITFVELKPGQRSK 119
G L GS P+++ F + + ++ K
Sbjct: 153 GMKLDGSPNPLVVKFADTEKDKKKK 177
>TAIR|locus:2015398 [details] [associations]
symbol:RBP47C' "RNA-binding protein 47C'" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0008143
"poly(A) RNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0034605
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494
EMBL:AC007519 GO:GO:0008143 HSSP:Q14103 HOGENOM:HOG000186228
EMBL:AK227406 EMBL:BT030029 IPI:IPI00530631 PIR:C96515
RefSeq:NP_175181.1 UniGene:At.22563 UniGene:At.64064
ProteinModelPortal:Q9SX80 SMR:Q9SX80 PRIDE:Q9SX80
EnsemblPlants:AT1G47500.1 GeneID:841159 KEGG:ath:AT1G47500
TAIR:At1g47500 InParanoid:Q9SX80 OMA:FANDIRP PhylomeDB:Q9SX80
ProtClustDB:CLSN2681931 Genevestigator:Q9SX80 Uniprot:Q9SX80
Length = 434
Score = 189 (71.6 bits), Expect = 1.9e-12, P = 1.9e-12
Identities = 70/283 (24%), Positives = 127/283 (44%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDV---RVARNK-NDESRGFAIIVFNTPAEAKKARVE 94
V +L+ +D +A +N R++ +V RNK N S G+ + F + A K E
Sbjct: 107 VGDLQNWMD-EAYLNSAFTSAEEREIVSLKVIRNKHNGSSEGYGFVEFESHDVADKVLQE 165
Query: 95 MNGHLIGS--KPVIITFVELKPGQ-RSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHF 151
NG + + +P + + G+ R + GP+ +FV +L V + L F
Sbjct: 166 FNGAPMPNTDQPFRLNWASFSTGEKRLENNGPDLS------IFVGDLAPDVSDALLHETF 219
Query: 152 I-KFGNIIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIX 209
K+ ++ K+V D N G+SKG+GF++F KA+ EMNG ++ +S + +
Sbjct: 220 SEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNG--VKCSSRAMRIGPAT 277
Query: 210 XXXXXXXXXXXXLLQPARKNK---------IFVANLPSNINNSEFEELFARFGTITSSSL 260
+ + IFV L S++ + + ++ F+ FG I S +
Sbjct: 278 PRKTNGYQQQGGYMPSGAFTRSEGDTINTTIFVGGLDSSVTDEDLKQPFSEFGEIVSVKI 337
Query: 261 VSDKHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKP 303
K GF++F+ +A A+ +NG V + ++++ G P
Sbjct: 338 PVGKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSW-GRNP 379
Score = 151 (58.2 bits), Expect = 5.2e-08, P = 5.2e-08
Identities = 51/171 (29%), Positives = 82/171 (47%)
Query: 37 LHVNNLEPSVDNQALINEF-KKFGTLRDVRVARNKND-ESRGFAIIVFNTPAEAKKARVE 94
+ V +L P V + L F +K+ +++ +V + N S+G+ + F E KA E
Sbjct: 201 IFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTE 260
Query: 95 MNGHLIGSKPVIITFVELKP--GQRSK----PVGP---EEKQYKKDKVFVKNLVETVDEE 145
MNG S+ + I + G + + P G E +FV L +V +E
Sbjct: 261 MNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPSGAFTRSEGDTINTTIFVGGLDSSVTDE 320
Query: 146 ELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMI 196
+LK F +FG I+ VKI KG GF+QF + AE+A+ ++NG +I
Sbjct: 321 DLKQPFSEFGEIVSVKIP-----VGKGCGFVQFVNRPNAEEALEKLNGTVI 366
Score = 136 (52.9 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 43/174 (24%), Positives = 83/174 (47%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGN--IIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAII 189
++V +L +DE L S F I+ +K++R++ NG S+G+GF++F S+ A+K +
Sbjct: 105 IWVGDLQNWMDEAYLNSAFTSAEEREIVSLKVIRNKHNGSSEGYGFVEFESHDVADKVLQ 164
Query: 190 EMNGRMIQHNSTFVSLAEIXXXXXXXXXXXXXLLQPARKNKIFVANLPSNINNSEFEELF 249
E NG + + L L IFV +L +++++ E F
Sbjct: 165 EFNGAPMPNTDQPFRL-----NWASFSTGEKRLENNGPDLSIFVGDLAPDVSDALLHETF 219
Query: 250 A-RFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
+ ++ ++ ++ +V D K GF+ F T A++ MNG S+ +++
Sbjct: 220 SEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRI 273
>RGD|628611 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 187 (70.9 bits), Expect = 1.9e-12, P = 1.9e-12
Identities = 54/176 (30%), Positives = 83/176 (47%)
Query: 118 SKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFI 176
S PV + K + L + + +EELKS F G I K+VRD+ G+S G+GF+
Sbjct: 26 SSPVDSGNTEDSKTNLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFV 85
Query: 177 QFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXXXXXXXXLLQPARKNKIFVANL 236
+ K AEKAI +NG +Q + VS A R ++V+ L
Sbjct: 86 NYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASI-------------RDANLYVSGL 132
Query: 237 PSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNG 286
P + E E+LF+++G I +S ++ D + +GFI F A A+ +NG
Sbjct: 133 PKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 148 (57.2 bits), Expect = 2.3e-12, Sum P(2) = 2.3e-12
Identities = 41/157 (26%), Positives = 80/157 (50%)
Query: 40 NNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGH 98
N L ++ + L + F G + ++ R+K +S G+ + + P +A+KA +NG
Sbjct: 44 NYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGL 103
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
+ +K + +++ P + ++V L +T+ ++EL+ F ++G II
Sbjct: 104 RLQTKTIKVSYAR-----------PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRII 152
Query: 159 EVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEMNGR 194
+I+ D+ G S+G GFI+F AE+AI +NG+
Sbjct: 153 TSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 189
Score = 121 (47.7 bits), Expect = 9.2e-05, P = 9.2e-05
Identities = 27/62 (43%), Positives = 34/62 (54%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAIIEM 191
+FV NL DE L F FG + VK++RD N K KGFGF+ +Y A AI +
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 192 NG 193
NG
Sbjct: 338 NG 339
Score = 81 (33.6 bits), Expect = 2.3e-12, Sum P(2) = 2.3e-12
Identities = 21/78 (26%), Positives = 38/78 (48%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTM 284
IFV NL + + S ++F FG +T+ ++ D K GF+ A A++++
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 285 NGHVFKSKPLKVTLSGTK 302
NG+ + L+V+ K
Sbjct: 338 NGYRLGDRVLQVSFKTNK 355
>UNIPROTKB|Q8CH84 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 187 (70.9 bits), Expect = 1.9e-12, P = 1.9e-12
Identities = 54/176 (30%), Positives = 83/176 (47%)
Query: 118 SKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFI 176
S PV + K + L + + +EELKS F G I K+VRD+ G+S G+GF+
Sbjct: 26 SSPVDSGNTEDSKTNLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFV 85
Query: 177 QFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXXXXXXXXLLQPARKNKIFVANL 236
+ K AEKAI +NG +Q + VS A R ++V+ L
Sbjct: 86 NYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASI-------------RDANLYVSGL 132
Query: 237 PSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNG 286
P + E E+LF+++G I +S ++ D + +GFI F A A+ +NG
Sbjct: 133 PKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 148 (57.2 bits), Expect = 2.3e-12, Sum P(2) = 2.3e-12
Identities = 41/157 (26%), Positives = 80/157 (50%)
Query: 40 NNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNGH 98
N L ++ + L + F G + ++ R+K +S G+ + + P +A+KA +NG
Sbjct: 44 NYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGL 103
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
+ +K + +++ P + ++V L +T+ ++EL+ F ++G II
Sbjct: 104 RLQTKTIKVSYAR-----------PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRII 152
Query: 159 EVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEMNGR 194
+I+ D+ G S+G GFI+F AE+AI +NG+
Sbjct: 153 TSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 189
Score = 121 (47.7 bits), Expect = 9.2e-05, P = 9.2e-05
Identities = 27/62 (43%), Positives = 34/62 (54%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAIIEM 191
+FV NL DE L F FG + VK++RD N K KGFGF+ +Y A AI +
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 192 NG 193
NG
Sbjct: 338 NG 339
Score = 81 (33.6 bits), Expect = 2.3e-12, Sum P(2) = 2.3e-12
Identities = 21/78 (26%), Positives = 38/78 (48%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTM 284
IFV NL + + S ++F FG +T+ ++ D K GF+ A A++++
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 285 NGHVFKSKPLKVTLSGTK 302
NG+ + L+V+ K
Sbjct: 338 NGYRLGDRVLQVSFKTNK 355
>UNIPROTKB|Q7ZWM3 [details] [associations]
symbol:tnrc4-b "CUGBP Elav-like family member 3-B"
species:8355 "Xenopus laevis" [GO:0048026 "positive regulation of
mRNA splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879 HOVERGEN:HBG107646
KO:K13207 GO:GO:0048026 EMBL:BC046942 RefSeq:NP_001080695.1
UniGene:Xl.12160 ProteinModelPortal:Q7ZWM3 SMR:Q7ZWM3 GeneID:380387
KEGG:xla:380387 CTD:380387 Xenbase:XB-GENE-5796640 Uniprot:Q7ZWM3
Length = 462
Score = 132 (51.5 bits), Expect = 1.9e-12, Sum P(2) = 1.9e-12
Identities = 42/158 (26%), Positives = 83/158 (52%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L + + ++D + L F++FG + ++ V ++K +G A + + A KA+ +
Sbjct: 9 LFIGQIPRNLDEKDLKPIFEQFGKIYELTVIKDKFTGMHKGCAFLTYCARESALKAQSAL 68
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
H + P + +++KP S+ G E++ K+FV L + +E+++ F FG
Sbjct: 69 --HEQKTLPGMNRPIQVKPAD-SESRG-EDR-----KLFVGMLGKQQTDEDVRRMFETFG 119
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNG 193
NI E ++R +G SKG F++F ++ A+ AI ++G
Sbjct: 120 NIDECTVLRGPDGTSKGCAFVKFQTHTEAQAAINALHG 157
Score = 116 (45.9 bits), Expect = 0.00051, P = 0.00051
Identities = 31/94 (32%), Positives = 49/94 (52%)
Query: 104 PVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIV 163
P I+T + P Q+ + GPE +F+ +L + + E+ F+ FGN+I K+
Sbjct: 357 PAILT--QQPPQQQQQREGPEGCN-----IFIYHLPQEFTDSEILQMFLPFGNVISAKVF 409
Query: 164 RDE-NGKSKGFGFIQFFSYKAAEKAIIEMNGRMI 196
D +SK FGF+ F + +A+ AI MNG I
Sbjct: 410 VDRATNQSKCFGFVSFDNPGSAQAAIQSMNGFQI 443
Score = 104 (41.7 bits), Expect = 1.9e-12, Sum P(2) = 1.9e-12
Identities = 27/78 (34%), Positives = 38/78 (48%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTM 284
IF+ +LP +SE ++F FG + S+ + D K GF+ F P A A+ +M
Sbjct: 379 IFIYHLPQEFTDSEILQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPGSAQAAIQSM 438
Query: 285 NGHVFKSKPLKVTLSGTK 302
NG K LKV L K
Sbjct: 439 NGFQIGMKRLKVQLKRPK 456
Score = 95 (38.5 bits), Expect = 2.7e-08, Sum P(2) = 2.7e-08
Identities = 19/57 (33%), Positives = 36/57 (63%)
Query: 132 KVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKA 187
K+F+ + +DE++LK F +FG I E+ +++D+ G KG F+ + + ++A KA
Sbjct: 8 KLFIGQIPRNLDEKDLKPIFEQFGKIYELTVIKDKFTGMHKGCAFLTYCARESALKA 64
>UNIPROTKB|D4AAT0 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00392493 ProteinModelPortal:D4AAT0
Ensembl:ENSRNOT00000035262 ArrayExpress:D4AAT0 Uniprot:D4AAT0
Length = 351
Score = 178 (67.7 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 50/164 (30%), Positives = 79/164 (48%)
Query: 130 KDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAI 188
K + V L + + +EE +S F G I K+VRD+ G+S G+GF+ + K AEKAI
Sbjct: 43 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 102
Query: 189 IEMNGRMIQHNSTFVSLAEIXXXXXXXXXXXXXLLQPARKNKIFVANLPSNINNSEFEEL 248
+NG +Q + VS A R ++V+ LP + E E+L
Sbjct: 103 NTLNGLRLQTKTIKVSYARPSSASI-------------RDANLYVSGLPKTMTQKELEQL 149
Query: 249 FARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNG 286
F+++G I +S ++ D + +GFI F A A+ +NG
Sbjct: 150 FSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 193
Score = 150 (57.9 bits), Expect = 2.4e-12, Sum P(2) = 2.4e-12
Identities = 42/160 (26%), Positives = 81/160 (50%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L VN L ++ + + F G + ++ R+K +S G+ + + P +A+KA +
Sbjct: 46 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 105
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
NG + +K + +++ P + ++V L +T+ ++EL+ F ++G
Sbjct: 106 NGLRLQTKTIKVSYAR-----------PSSASIRDANLYVSGLPKTMTQKELEQLFSQYG 154
Query: 156 NIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEMNGR 194
II +I+ D+ G S+G GFI+F AE+AI +NG+
Sbjct: 155 RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 194
Score = 123 (48.4 bits), Expect = 5.3e-05, P = 5.3e-05
Identities = 29/76 (38%), Positives = 40/76 (52%)
Query: 228 KNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDK------HIGFIEFIMPKHATHAV 281
K + V LP N+ EF LF G I S LV DK GF+ +I PK A A+
Sbjct: 43 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 102
Query: 282 STMNGHVFKSKPLKVT 297
+T+NG ++K +KV+
Sbjct: 103 NTLNGLRLQTKTIKVS 118
Score = 115 (45.5 bits), Expect = 0.00043, P = 0.00043
Identities = 27/62 (43%), Positives = 34/62 (54%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAIIEM 191
+FV NL DE L F FG + VK++RD N K KGFGF+ +Y A AI +
Sbjct: 270 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 329
Query: 192 NG 193
NG
Sbjct: 330 NG 331
Score = 78 (32.5 bits), Expect = 2.4e-12, Sum P(2) = 2.4e-12
Identities = 21/78 (26%), Positives = 37/78 (47%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTM 284
IFV NL + + S +LF FG + + ++ D K GF+ A A++++
Sbjct: 270 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 329
Query: 285 NGHVFKSKPLKVTLSGTK 302
NG+ + L+V+ K
Sbjct: 330 NGYRLGDRVLQVSFKTNK 347
>UNIPROTKB|Q91579 [details] [associations]
symbol:tnrc4-a "CUGBP Elav-like family member 3-A"
species:8355 "Xenopus laevis" [GO:0048026 "positive regulation of
mRNA splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:U16800 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BC057704 EMBL:BC072134
RefSeq:NP_001079936.1 UniGene:Xl.986 HSSP:Q92879
ProteinModelPortal:Q91579 SMR:Q91579 GeneID:379627 KEGG:xla:379627
CTD:379627 Xenbase:XB-GENE-6255196 HOVERGEN:HBG107646 KO:K13207
GO:GO:0048026 Uniprot:Q91579
Length = 462
Score = 132 (51.5 bits), Expect = 2.4e-12, Sum P(2) = 2.4e-12
Identities = 42/158 (26%), Positives = 83/158 (52%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L + + ++D + L F++FG + ++ V ++K +G A + + A KA+ +
Sbjct: 9 LFIGQIPRNLDEKDLKPIFEQFGKIYELTVIKDKFTGMHKGCAFLTYCARESALKAQSAL 68
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
H + P + +++KP S+ G E++ K+FV L + +E+++ F FG
Sbjct: 69 --HEQKTLPGMNRPIQVKPAD-SESRG-EDR-----KLFVGMLGKQQTDEDVRRMFEPFG 119
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNG 193
NI E ++R +G SKG F++F ++ A+ AI ++G
Sbjct: 120 NIDECTVLRGPDGTSKGCAFVKFQTHTEAQAAINALHG 157
Score = 103 (41.3 bits), Expect = 2.4e-12, Sum P(2) = 2.4e-12
Identities = 27/78 (34%), Positives = 37/78 (47%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTM 284
IF+ +LP +SE ++F FG + S+ + D K GF+ F P A A+ M
Sbjct: 379 IFIYHLPQEFTDSEILQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPGSAQAAIQAM 438
Query: 285 NGHVFKSKPLKVTLSGTK 302
NG K LKV L K
Sbjct: 439 NGFQIGMKRLKVQLKRPK 456
Score = 95 (38.5 bits), Expect = 3.5e-08, Sum P(2) = 3.5e-08
Identities = 19/57 (33%), Positives = 36/57 (63%)
Query: 132 KVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKA 187
K+F+ + +DE++LK F +FG I E+ +++D+ G KG F+ + + ++A KA
Sbjct: 8 KLFIGQIPRNLDEKDLKPIFEQFGKIYELTVIKDKFTGMHKGCAFLTYCARESALKA 64
>UNIPROTKB|F1PXQ8 [details] [associations]
symbol:CELF5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13207
GeneTree:ENSGT00560000076837 CTD:60680 OMA:DGMKDLD
EMBL:AAEX03012581 RefSeq:XP_854891.3 Ensembl:ENSCAFT00000030591
GeneID:612072 KEGG:cfa:612072 Uniprot:F1PXQ8
Length = 485
Score = 126 (49.4 bits), Expect = 2.6e-12, Sum P(2) = 2.6e-12
Identities = 42/158 (26%), Positives = 79/158 (50%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L V + ++D + L F++FG + ++ V ++ +G A + + A KA+ +
Sbjct: 47 LFVGQIPRNLDEKDLKPLFEQFGRIYELTVLKDPYTGMHKGCAFLTYCARDSAIKAQTAL 106
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
H + P + +++KP S+ G ++ K+FV L + EE++ F FG
Sbjct: 107 --HEQKTLPGMARPIQVKPAD-SESRGGRDR-----KLFVGMLNKQQSEEDVLRLFQPFG 158
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNG 193
I E ++R +G SKG F++F S+ A+ AI ++G
Sbjct: 159 VIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHG 196
Score = 110 (43.8 bits), Expect = 2.6e-12, Sum P(2) = 2.6e-12
Identities = 29/81 (35%), Positives = 39/81 (48%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTM 284
+F+ +LP ++E ++F FG I SS + D K GF+ F P A A+ M
Sbjct: 402 LFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRATNQSKCFGFVSFDNPASAQTAIQAM 461
Query: 285 NGHVFKSKPLKVTLSGTK-PG 304
NG K LKV L K PG
Sbjct: 462 NGFQIGMKRLKVQLKRPKDPG 482
>UNIPROTKB|F1P336 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00550000074656
EMBL:AADN02020638 EMBL:AADN02020639 IPI:IPI00680028
Ensembl:ENSGALT00000033265 ArrayExpress:F1P336 Uniprot:F1P336
Length = 689
Score = 191 (72.3 bits), Expect = 2.7e-12, P = 2.7e-12
Identities = 76/274 (27%), Positives = 121/274 (44%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L V NL V + N F+ +VR+ NK S+G A I F T AEA+KA E
Sbjct: 371 LFVKNLPYRVTEDEMKNVFEN---ALEVRLVLNKEGSSKGMAYIEFKTEAEAEKALEEKQ 427
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G + + ++I + K Q S+ G E++ K + V NL EE L+ F K +
Sbjct: 428 GTEVDGRAMVIDYTGEKSQQESQK-GGGERESKT--LIVNNLSYAASEETLQELFKKATS 484
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXXX 216
I K+ ++ G+ KG+ F++F + + A++A+ N I+ + + +
Sbjct: 485 I---KMPQNNQGRPKGYAFVEFPTAEDAKEALNSCNNTEIEGRAIRLEFSSPSWQKGNMN 541
Query: 217 XXXXXLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIE 270
Q +FV L + E F G+I S+ +V+D K GF++
Sbjct: 542 ARGGFNQQ---SKTLFVRGLSEDTTEETLRESFE--GSI-SARIVTDRDTGSSKGFGFVD 595
Query: 271 FIMPKHATHAVSTM-NGHVFKSKPLKVTLSGTKP 303
F P+ A A M +G + +K VTL KP
Sbjct: 596 FSSPEDAKAAKEAMEDGEIDGNK---VTLDFAKP 626
Score = 183 (69.5 bits), Expect = 2.3e-11, P = 2.3e-11
Identities = 64/267 (23%), Positives = 125/267 (46%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L V NL P+ D + L K+F ++++V+ + S+ F + F + + KA +++N
Sbjct: 281 LFVKNLTPTKDYEELRTAIKEFFGKKNLQVSEVRIGSSKRFGYVDFLSAEDMDKA-LQLN 339
Query: 97 GH-LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
G L+G + ++L+ + + + +K+ +FVKNL V E+E+K+ F
Sbjct: 340 GKKLMGLE------IKLEKAKSKESLKENKKERDARTLFVKNLPYRVTEDEMKN---VFE 390
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXX 215
N +EV++V ++ G SKG +I+F + AEKA+ E G + + +
Sbjct: 391 NALEVRLVLNKEGSSKGMAYIEFKTEAEAEKALEEKQGTEVDGRAMVIDYTGEKSQQESQ 450
Query: 216 XXXXXXLLQPARKNK-IFVANLPSNINNSEFEELFARFGTIT--SSSLVSDKHIGFIEFI 272
R++K + V NL + +ELF + +I ++ K F+EF
Sbjct: 451 KGGGE------RESKTLIVNNLSYAASEETLQELFKKATSIKMPQNNQGRPKGYAFVEFP 504
Query: 273 MPKHATHAVSTMNGHVFKSKPLKVTLS 299
+ A A+++ N + + +++ S
Sbjct: 505 TAEDAKEALNSCNNTEIEGRAIRLEFS 531
Score = 132 (51.5 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 52/207 (25%), Positives = 88/207 (42%)
Query: 110 VELKPGQRSKPVG----PEEKQYKKD--------KVFVKNLVETVDEEELKSHFIKFGNI 157
V+ PG+R K + PE K+ K + +FVKNL T D EEL++ +F
Sbjct: 246 VKEAPGKRKKEMANKSAPEAKKKKTEIKAPASAFSLFVKNLTPTKDYEELRTAIKEFFGK 305
Query: 158 IEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXXXX 217
+++ G SK FG++ F S + +KA+ ++NG+ + + L EI
Sbjct: 306 KNLQVSEVRIGSSKRFGYVDFLSAEDMDKAL-QLNGKKL------MGL-EIKLEKAKSKE 357
Query: 218 XXXXLLQPARKNKIFVANLPSNINNSEFEELF--ARFGTITSSSLVSDKHIGFIEFIMPK 275
+ +FV NLP + E + +F A + + S K + +IEF
Sbjct: 358 SLKENKKERDARTLFVKNLPYRVTEDEMKNVFENALEVRLVLNKEGSSKGMAYIEFKTEA 417
Query: 276 HATHAVSTMNGHVFKSKPLKVTLSGTK 302
A A+ G + + + +G K
Sbjct: 418 EAEKALEEKQGTEVDGRAMVIDYTGEK 444
>UNIPROTKB|F1NU40 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005938 "cell cortex" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0042162 "telomeric
DNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005938
GO:GO:0005654 GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0042162
GeneTree:ENSGT00550000074656 IPI:IPI00577202 OMA:ENAMEIR
EMBL:AADN02020638 EMBL:AADN02020639 Ensembl:ENSGALT00000012486
ArrayExpress:F1NU40 Uniprot:F1NU40
Length = 691
Score = 191 (72.3 bits), Expect = 2.7e-12, P = 2.7e-12
Identities = 76/274 (27%), Positives = 121/274 (44%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L V NL V + N F+ +VR+ NK S+G A I F T AEA+KA E
Sbjct: 373 LFVKNLPYRVTEDEMKNVFEN---ALEVRLVLNKEGSSKGMAYIEFKTEAEAEKALEEKQ 429
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G + + ++I + K Q S+ G E++ K + V NL EE L+ F K +
Sbjct: 430 GTEVDGRAMVIDYTGEKSQQESQK-GGGERESKT--LIVNNLSYAASEETLQELFKKATS 486
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXXX 216
I K+ ++ G+ KG+ F++F + + A++A+ N I+ + + +
Sbjct: 487 I---KMPQNNQGRPKGYAFVEFPTAEDAKEALNSCNNTEIEGRAIRLEFSSPSWQKGNMN 543
Query: 217 XXXXXLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIE 270
Q +FV L + E F G+I S+ +V+D K GF++
Sbjct: 544 ARGGFNQQ---SKTLFVRGLSEDTTEETLRESFE--GSI-SARIVTDRDTGSSKGFGFVD 597
Query: 271 FIMPKHATHAVSTM-NGHVFKSKPLKVTLSGTKP 303
F P+ A A M +G + +K VTL KP
Sbjct: 598 FSSPEDAKAAKEAMEDGEIDGNK---VTLDFAKP 628
Score = 183 (69.5 bits), Expect = 2.3e-11, P = 2.3e-11
Identities = 64/267 (23%), Positives = 125/267 (46%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L V NL P+ D + L K+F ++++V+ + S+ F + F + + KA +++N
Sbjct: 283 LFVKNLTPTKDYEELRTAIKEFFGKKNLQVSEVRIGSSKRFGYVDFLSAEDMDKA-LQLN 341
Query: 97 GH-LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
G L+G + ++L+ + + + +K+ +FVKNL V E+E+K+ F
Sbjct: 342 GKKLMGLE------IKLEKAKSKESLKENKKERDARTLFVKNLPYRVTEDEMKN---VFE 392
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXX 215
N +EV++V ++ G SKG +I+F + AEKA+ E G + + +
Sbjct: 393 NALEVRLVLNKEGSSKGMAYIEFKTEAEAEKALEEKQGTEVDGRAMVIDYTGEKSQQESQ 452
Query: 216 XXXXXXLLQPARKNK-IFVANLPSNINNSEFEELFARFGTIT--SSSLVSDKHIGFIEFI 272
R++K + V NL + +ELF + +I ++ K F+EF
Sbjct: 453 KGGGE------RESKTLIVNNLSYAASEETLQELFKKATSIKMPQNNQGRPKGYAFVEFP 506
Query: 273 MPKHATHAVSTMNGHVFKSKPLKVTLS 299
+ A A+++ N + + +++ S
Sbjct: 507 TAEDAKEALNSCNNTEIEGRAIRLEFS 533
Score = 136 (52.9 bits), Expect = 5.3e-06, P = 5.3e-06
Identities = 52/205 (25%), Positives = 88/205 (42%)
Query: 110 VELKPGQRSKPVG----PEEKQYKKD------KVFVKNLVETVDEEELKSHFIKFGNIIE 159
V+ PG+R K + PE K+ K + +FVKNL T D EEL++ +F
Sbjct: 250 VKEAPGKRKKEMANKSAPEAKKKKTETPASAFSLFVKNLTPTKDYEELRTAIKEFFGKKN 309
Query: 160 VKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXXXXXX 219
+++ G SK FG++ F S + +KA+ ++NG+ + + L EI
Sbjct: 310 LQVSEVRIGSSKRFGYVDFLSAEDMDKAL-QLNGKKL------MGL-EIKLEKAKSKESL 361
Query: 220 XXLLQPARKNKIFVANLPSNINNSEFEELF--ARFGTITSSSLVSDKHIGFIEFIMPKHA 277
+ +FV NLP + E + +F A + + S K + +IEF A
Sbjct: 362 KENKKERDARTLFVKNLPYRVTEDEMKNVFENALEVRLVLNKEGSSKGMAYIEFKTEAEA 421
Query: 278 THAVSTMNGHVFKSKPLKVTLSGTK 302
A+ G + + + +G K
Sbjct: 422 EKALEEKQGTEVDGRAMVIDYTGEK 446
>UNIPROTKB|P15771 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K11294 EMBL:X17199 EMBL:M21791
IPI:IPI00577202 PIR:S08414 RefSeq:NP_990596.1 UniGene:Gga.3663
ProteinModelPortal:P15771 SMR:P15771 STRING:P15771 PRIDE:P15771
GeneID:396201 KEGG:gga:396201 CTD:4691 HOGENOM:HOG000113885
InParanoid:P15771 NextBio:20816253 Uniprot:P15771
Length = 694
Score = 191 (72.3 bits), Expect = 2.7e-12, P = 2.7e-12
Identities = 76/274 (27%), Positives = 121/274 (44%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L V NL V + N F+ +VR+ NK S+G A I F T AEA+KA E
Sbjct: 373 LFVKNLPYRVTEDEMKNVFEN---ALEVRLVLNKEGSSKGMAYIEFKTEAEAEKALEEKQ 429
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G + + ++I + K Q S+ G E++ K + V NL EE L+ F K +
Sbjct: 430 GTEVDGRAMVIDYTGEKSQQESQK-GGGERESKT--LIVNNLSYAASEETLQELFKKATS 486
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXXX 216
I K+ ++ G+ KG+ F++F + + A++A+ N I+ + + +
Sbjct: 487 I---KMPQNNQGRPKGYAFVEFPTAEDAKEALNSCNNTEIEGRAIRLEFSSPSWQKGNMN 543
Query: 217 XXXXXLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIE 270
Q +FV L + E F G+I S+ +V+D K GF++
Sbjct: 544 ARGGFNQQ---SKTLFVRGLSEDTTEETLRESFE--GSI-SARIVTDRDTGSSKGFGFVD 597
Query: 271 FIMPKHATHAVSTM-NGHVFKSKPLKVTLSGTKP 303
F P+ A A M +G + +K VTL KP
Sbjct: 598 FSSPEDAKAAKEAMEDGEIDGNK---VTLDFAKP 628
Score = 183 (69.5 bits), Expect = 2.4e-11, P = 2.4e-11
Identities = 64/267 (23%), Positives = 125/267 (46%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L V NL P+ D + L K+F ++++V+ + S+ F + F + + KA +++N
Sbjct: 283 LFVKNLTPTKDYEELRTAIKEFFGKKNLQVSEVRIGSSKRFGYVDFLSAEDMDKA-LQLN 341
Query: 97 GH-LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
G L+G + ++L+ + + + +K+ +FVKNL V E+E+K+ F
Sbjct: 342 GKKLMGLE------IKLEKAKSKESLKENKKERDARTLFVKNLPYRVTEDEMKN---VFE 392
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXX 215
N +EV++V ++ G SKG +I+F + AEKA+ E G + + +
Sbjct: 393 NALEVRLVLNKEGSSKGMAYIEFKTEAEAEKALEEKQGTEVDGRAMVIDYTGEKSQQESQ 452
Query: 216 XXXXXXLLQPARKNK-IFVANLPSNINNSEFEELFARFGTIT--SSSLVSDKHIGFIEFI 272
R++K + V NL + +ELF + +I ++ K F+EF
Sbjct: 453 KGGGE------RESKTLIVNNLSYAASEETLQELFKKATSIKMPQNNQGRPKGYAFVEFP 506
Query: 273 MPKHATHAVSTMNGHVFKSKPLKVTLS 299
+ A A+++ N + + +++ S
Sbjct: 507 TAEDAKEALNSCNNTEIEGRAIRLEFS 533
Score = 136 (52.9 bits), Expect = 5.4e-06, P = 5.4e-06
Identities = 52/205 (25%), Positives = 88/205 (42%)
Query: 110 VELKPGQRSKPVG----PEEKQYKKD------KVFVKNLVETVDEEELKSHFIKFGNIIE 159
V+ PG+R K + PE K+ K + +FVKNL T D EEL++ +F
Sbjct: 250 VKEAPGKRKKEMANKSAPEAKKKKTETPASAFSLFVKNLTPTKDYEELRTAIKEFFGKKN 309
Query: 160 VKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXXXXXX 219
+++ G SK FG++ F S + +KA+ ++NG+ + + L EI
Sbjct: 310 LQVSEVRIGSSKRFGYVDFLSAEDMDKAL-QLNGKKL------MGL-EIKLEKAKSKESL 361
Query: 220 XXLLQPARKNKIFVANLPSNINNSEFEELF--ARFGTITSSSLVSDKHIGFIEFIMPKHA 277
+ +FV NLP + E + +F A + + S K + +IEF A
Sbjct: 362 KENKKERDARTLFVKNLPYRVTEDEMKNVFENALEVRLVLNKEGSSKGMAYIEFKTEAEA 421
Query: 278 THAVSTMNGHVFKSKPLKVTLSGTK 302
A+ G + + + +G K
Sbjct: 422 EKALEEKQGTEVDGRAMVIDYTGEK 446
>UNIPROTKB|A2VDK5 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
OMA:SNSRNCP EMBL:DAAA02008922 EMBL:DAAA02008923 EMBL:BC133283
IPI:IPI00729244 RefSeq:NP_001075075.1 UniGene:Bt.26853 SMR:A2VDK5
STRING:A2VDK5 Ensembl:ENSBTAT00000028031 GeneID:535408
KEGG:bta:535408 InParanoid:A2VDK5 NextBio:20876736 Uniprot:A2VDK5
Length = 366
Score = 178 (67.7 bits), Expect = 2.5e-11, P = 2.5e-11
Identities = 50/164 (30%), Positives = 79/164 (48%)
Query: 130 KDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAI 188
K + V L + + +EE +S F G I K+VRD+ G+S G+GF+ + K AEKAI
Sbjct: 45 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 104
Query: 189 IEMNGRMIQHNSTFVSLAEIXXXXXXXXXXXXXLLQPARKNKIFVANLPSNINNSEFEEL 248
+NG +Q + VS A R ++V+ LP + E E+L
Sbjct: 105 NTLNGLRLQTKTIKVSYARPSSASI-------------RDANLYVSGLPKTMTQKELEQL 151
Query: 249 FARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNG 286
F+++G I +S ++ D + +GFI F A A+ +NG
Sbjct: 152 FSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 195
Score = 150 (57.9 bits), Expect = 2.9e-12, Sum P(2) = 2.9e-12
Identities = 42/160 (26%), Positives = 81/160 (50%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L VN L ++ + + F G + ++ R+K +S G+ + + P +A+KA +
Sbjct: 48 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 107
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
NG + +K + +++ P + ++V L +T+ ++EL+ F ++G
Sbjct: 108 NGLRLQTKTIKVSYAR-----------PSSASIRDANLYVSGLPKTMTQKELEQLFSQYG 156
Query: 156 NIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEMNGR 194
II +I+ D+ G S+G GFI+F AE+AI +NG+
Sbjct: 157 RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 196
Score = 123 (48.4 bits), Expect = 5.7e-05, P = 5.7e-05
Identities = 29/76 (38%), Positives = 40/76 (52%)
Query: 228 KNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDK------HIGFIEFIMPKHATHAV 281
K + V LP N+ EF LF G I S LV DK GF+ +I PK A A+
Sbjct: 45 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 104
Query: 282 STMNGHVFKSKPLKVT 297
+T+NG ++K +KV+
Sbjct: 105 NTLNGLRLQTKTIKVS 120
Score = 115 (45.5 bits), Expect = 0.00046, P = 0.00046
Identities = 27/62 (43%), Positives = 34/62 (54%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAIIEM 191
+FV NL DE L F FG + VK++RD N K KGFGF+ +Y A AI +
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344
Query: 192 NG 193
NG
Sbjct: 345 NG 346
Score = 78 (32.5 bits), Expect = 2.9e-12, Sum P(2) = 2.9e-12
Identities = 21/78 (26%), Positives = 37/78 (47%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTM 284
IFV NL + + S +LF FG + + ++ D K GF+ A A++++
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344
Query: 285 NGHVFKSKPLKVTLSGTK 302
NG+ + L+V+ K
Sbjct: 345 NGYRLGDRVLQVSFKTNK 362
>UNIPROTKB|J9PAL3 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1996 EMBL:AAEX03009733
RefSeq:XP_859918.1 ProteinModelPortal:J9PAL3
Ensembl:ENSCAFT00000045412 GeneID:475361 KEGG:cfa:475361
Uniprot:J9PAL3
Length = 366
Score = 178 (67.7 bits), Expect = 2.5e-11, P = 2.5e-11
Identities = 50/164 (30%), Positives = 79/164 (48%)
Query: 130 KDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAI 188
K + V L + + +EE +S F G I K+VRD+ G+S G+GF+ + K AEKAI
Sbjct: 45 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 104
Query: 189 IEMNGRMIQHNSTFVSLAEIXXXXXXXXXXXXXLLQPARKNKIFVANLPSNINNSEFEEL 248
+NG +Q + VS A R ++V+ LP + E E+L
Sbjct: 105 NTLNGLRLQTKTIKVSYARPSSASI-------------RDANLYVSGLPKTMTQKELEQL 151
Query: 249 FARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNG 286
F+++G I +S ++ D + +GFI F A A+ +NG
Sbjct: 152 FSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 195
Score = 150 (57.9 bits), Expect = 2.9e-12, Sum P(2) = 2.9e-12
Identities = 42/160 (26%), Positives = 81/160 (50%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L VN L ++ + + F G + ++ R+K +S G+ + + P +A+KA +
Sbjct: 48 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 107
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
NG + +K + +++ P + ++V L +T+ ++EL+ F ++G
Sbjct: 108 NGLRLQTKTIKVSYAR-----------PSSASIRDANLYVSGLPKTMTQKELEQLFSQYG 156
Query: 156 NIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEMNGR 194
II +I+ D+ G S+G GFI+F AE+AI +NG+
Sbjct: 157 RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 196
Score = 123 (48.4 bits), Expect = 5.7e-05, P = 5.7e-05
Identities = 29/76 (38%), Positives = 40/76 (52%)
Query: 228 KNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDK------HIGFIEFIMPKHATHAV 281
K + V LP N+ EF LF G I S LV DK GF+ +I PK A A+
Sbjct: 45 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 104
Query: 282 STMNGHVFKSKPLKVT 297
+T+NG ++K +KV+
Sbjct: 105 NTLNGLRLQTKTIKVS 120
Score = 115 (45.5 bits), Expect = 0.00046, P = 0.00046
Identities = 27/62 (43%), Positives = 34/62 (54%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAIIEM 191
+FV NL DE L F FG + VK++RD N K KGFGF+ +Y A AI +
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344
Query: 192 NG 193
NG
Sbjct: 345 NG 346
Score = 78 (32.5 bits), Expect = 2.9e-12, Sum P(2) = 2.9e-12
Identities = 21/78 (26%), Positives = 37/78 (47%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTM 284
IFV NL + + S +LF FG + + ++ D K GF+ A A++++
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344
Query: 285 NGHVFKSKPLKVTLSGTK 302
NG+ + L+V+ K
Sbjct: 345 NGYRLGDRVLQVSFKTNK 362
>UNIPROTKB|F1NLH0 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:SNSRNCP
EMBL:AADN02012596 IPI:IPI00594347 ProteinModelPortal:F1NLH0
Ensembl:ENSGALT00000017146 Uniprot:F1NLH0
Length = 371
Score = 178 (67.7 bits), Expect = 2.6e-11, P = 2.6e-11
Identities = 50/164 (30%), Positives = 79/164 (48%)
Query: 130 KDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAI 188
K + V L + + +EE +S F G I K+VRD+ G+S G+GF+ + K AEKAI
Sbjct: 50 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 109
Query: 189 IEMNGRMIQHNSTFVSLAEIXXXXXXXXXXXXXLLQPARKNKIFVANLPSNINNSEFEEL 248
+NG +Q + VS A R ++V+ LP + E E+L
Sbjct: 110 NTLNGLRLQTKTIKVSYARPSSASI-------------RDANLYVSGLPKTMTQKELEQL 156
Query: 249 FARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNG 286
F+++G I +S ++ D + +GFI F A A+ +NG
Sbjct: 157 FSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 200
Score = 150 (57.9 bits), Expect = 3.0e-12, Sum P(2) = 3.0e-12
Identities = 42/160 (26%), Positives = 81/160 (50%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L VN L ++ + + F G + ++ R+K +S G+ + + P +A+KA +
Sbjct: 53 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 112
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
NG + +K + +++ P + ++V L +T+ ++EL+ F ++G
Sbjct: 113 NGLRLQTKTIKVSYAR-----------PSSASIRDANLYVSGLPKTMTQKELEQLFSQYG 161
Query: 156 NIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEMNGR 194
II +I+ D+ G S+G GFI+F AE+AI +NG+
Sbjct: 162 RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 201
Score = 123 (48.4 bits), Expect = 5.9e-05, P = 5.9e-05
Identities = 29/76 (38%), Positives = 40/76 (52%)
Query: 228 KNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDK------HIGFIEFIMPKHATHAV 281
K + V LP N+ EF LF G I S LV DK GF+ +I PK A A+
Sbjct: 50 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 109
Query: 282 STMNGHVFKSKPLKVT 297
+T+NG ++K +KV+
Sbjct: 110 NTLNGLRLQTKTIKVS 125
Score = 115 (45.5 bits), Expect = 0.00047, P = 0.00047
Identities = 27/62 (43%), Positives = 34/62 (54%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAIIEM 191
+FV NL DE L F FG + VK++RD N K KGFGF+ +Y A AI +
Sbjct: 290 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 349
Query: 192 NG 193
NG
Sbjct: 350 NG 351
Score = 78 (32.5 bits), Expect = 3.0e-12, Sum P(2) = 3.0e-12
Identities = 21/78 (26%), Positives = 37/78 (47%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTM 284
IFV NL + + S +LF FG + + ++ D K GF+ A A++++
Sbjct: 290 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 349
Query: 285 NGHVFKSKPLKVTLSGTK 302
NG+ + L+V+ K
Sbjct: 350 NGYRLGDRVLQVSFKTNK 367
>UNIPROTKB|B1APY9 [details] [associations]
symbol:ELAVL4 "cDNA FLJ50619, highly similar to ELAV-like
protein 4" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
UniGene:Hs.213050 HGNC:HGNC:3315 EMBL:AK298902 IPI:IPI00643012
SMR:B1APY9 STRING:B1APY9 Ensembl:ENST00000371819 UCSC:uc009vyu.3
Uniprot:B1APY9
Length = 371
Score = 178 (67.7 bits), Expect = 2.6e-11, P = 2.6e-11
Identities = 50/164 (30%), Positives = 79/164 (48%)
Query: 130 KDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAI 188
K + V L + + +EE +S F G I K+VRD+ G+S G+GF+ + K AEKAI
Sbjct: 50 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 109
Query: 189 IEMNGRMIQHNSTFVSLAEIXXXXXXXXXXXXXLLQPARKNKIFVANLPSNINNSEFEEL 248
+NG +Q + VS A R ++V+ LP + E E+L
Sbjct: 110 NTLNGLRLQTKTIKVSYARPSSASI-------------RDANLYVSGLPKTMTQKELEQL 156
Query: 249 FARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNG 286
F+++G I +S ++ D + +GFI F A A+ +NG
Sbjct: 157 FSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 200
Score = 150 (57.9 bits), Expect = 3.0e-12, Sum P(2) = 3.0e-12
Identities = 42/160 (26%), Positives = 81/160 (50%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L VN L ++ + + F G + ++ R+K +S G+ + + P +A+KA +
Sbjct: 53 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 112
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
NG + +K + +++ P + ++V L +T+ ++EL+ F ++G
Sbjct: 113 NGLRLQTKTIKVSYAR-----------PSSASIRDANLYVSGLPKTMTQKELEQLFSQYG 161
Query: 156 NIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEMNGR 194
II +I+ D+ G S+G GFI+F AE+AI +NG+
Sbjct: 162 RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 201
Score = 123 (48.4 bits), Expect = 5.9e-05, P = 5.9e-05
Identities = 29/76 (38%), Positives = 40/76 (52%)
Query: 228 KNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDK------HIGFIEFIMPKHATHAV 281
K + V LP N+ EF LF G I S LV DK GF+ +I PK A A+
Sbjct: 50 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 109
Query: 282 STMNGHVFKSKPLKVT 297
+T+NG ++K +KV+
Sbjct: 110 NTLNGLRLQTKTIKVS 125
Score = 115 (45.5 bits), Expect = 0.00047, P = 0.00047
Identities = 27/62 (43%), Positives = 34/62 (54%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAIIEM 191
+FV NL DE L F FG + VK++RD N K KGFGF+ +Y A AI +
Sbjct: 290 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 349
Query: 192 NG 193
NG
Sbjct: 350 NG 351
Score = 78 (32.5 bits), Expect = 3.0e-12, Sum P(2) = 3.0e-12
Identities = 21/78 (26%), Positives = 37/78 (47%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTM 284
IFV NL + + S +LF FG + + ++ D K GF+ A A++++
Sbjct: 290 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 349
Query: 285 NGHVFKSKPLKVTLSGTK 302
NG+ + L+V+ K
Sbjct: 350 NGYRLGDRVLQVSFKTNK 367
>UNIPROTKB|Q3ZCE2 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:9913 "Bos taurus"
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0045727 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064
OMA:RFGGPLH EMBL:DAAA02019508 EMBL:DAAA02019509 EMBL:BC102495
IPI:IPI00703347 RefSeq:NP_001069922.1 UniGene:Bt.49576 SMR:Q3ZCE2
STRING:Q3ZCE2 Ensembl:ENSBTAT00000000805 GeneID:617316
KEGG:bta:617316 InParanoid:Q3ZCE2 NextBio:20900599 Uniprot:Q3ZCE2
Length = 326
Score = 184 (69.8 bits), Expect = 3.1e-12, P = 3.1e-12
Identities = 50/176 (28%), Positives = 90/176 (51%)
Query: 130 KDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAI 188
+ + V L + + ++EL+S F G + K++RD+ G S G+GF+ + + K AE+AI
Sbjct: 19 RTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAI 78
Query: 189 IEMNGRMIQHNSTFVSLAEIXXXXXXXXXXXXXLLQPARKNKIFVANLPSNINNSEFEEL 248
+NG +Q + VS A +++ A ++++ LP N+ + E++
Sbjct: 79 NTLNGLRLQSKTIKVSYAR----------PSSEVIKDAN---LYISGLPRNMTQKDVEDM 125
Query: 249 FARFGTITSSSLVSDKHIG------FIEFIMPKHATHAVSTMNGHV--FKSKPLKV 296
F+RFG I +S ++ D+ G FI F A A+++ NGH S+P+ V
Sbjct: 126 FSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITV 181
Score = 140 (54.3 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
Identities = 39/159 (24%), Positives = 76/159 (47%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L VN L ++ L + F G + ++ R+K S G+ + + T +A++A +
Sbjct: 22 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 81
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
NG + SK + +++ P + K +++ L + +++++ F +FG
Sbjct: 82 NGLRLQSKTIKVSYAR-----------PSSEVIKDANLYISGLPRNMTQKDVEDMFSRFG 130
Query: 156 NIIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAIIEMNG 193
II +++ D+ G S+G FI+F AE+AI NG
Sbjct: 131 RIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 169
Score = 120 (47.3 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 26/62 (41%), Positives = 36/62 (58%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAIIEM 191
+F+ NL + DE L F FG + VK++RD N K KGFGF+ +Y+ A AI +
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 192 NG 193
NG
Sbjct: 306 NG 307
Score = 115 (45.5 bits), Expect = 0.00037, P = 0.00037
Identities = 25/76 (32%), Positives = 41/76 (53%)
Query: 228 KNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDK---H---IGFIEFIMPKHATHAV 281
+ + V LP N+ E LF+ G + S+ L+ DK H GF+ ++ K A A+
Sbjct: 19 RTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAI 78
Query: 282 STMNGHVFKSKPLKVT 297
+T+NG +SK +KV+
Sbjct: 79 NTLNGLRLQSKTIKVS 94
Score = 84 (34.6 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 24/83 (28%), Positives = 44/83 (53%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDE-SRGFAIIVFNTPAEAKKARVEM 95
L+++ L ++ + + + F +FG + + RV ++ SRG A I F+ +EA++A
Sbjct: 108 LYISGLPRNMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSF 167
Query: 96 NGHLI--GSKPVIITFVELKPGQ 116
NGH S+P+ + F P Q
Sbjct: 168 NGHKPPGSSEPITVKFAA-NPNQ 189
Score = 80 (33.2 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
Identities = 20/78 (25%), Positives = 38/78 (48%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTM 284
IF+ NL + + ++F FG +T+ ++ D K GF+ + A A++++
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 285 NGHVFKSKPLKVTLSGTK 302
NG+ K L+V+ K
Sbjct: 306 NGYRLGDKILQVSFKTNK 323
>RGD|1560027 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO;ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996 OMA:SNSRNCP
EMBL:S83320 IPI:IPI00560167 RefSeq:NP_001071119.1 UniGene:Rn.134702
ProteinModelPortal:O09032 SMR:O09032 STRING:O09032
PhosphoSite:O09032 GeneID:432358 KEGG:rno:432358 UCSC:RGD:1560027
InParanoid:O09032 NextBio:696819 ArrayExpress:O09032
Genevestigator:O09032 GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 178 (67.7 bits), Expect = 2.6e-11, P = 2.6e-11
Identities = 50/164 (30%), Positives = 79/164 (48%)
Query: 130 KDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAI 188
K + V L + + +EE +S F G I K+VRD+ G+S G+GF+ + K AEKAI
Sbjct: 38 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 97
Query: 189 IEMNGRMIQHNSTFVSLAEIXXXXXXXXXXXXXLLQPARKNKIFVANLPSNINNSEFEEL 248
+NG +Q + VS A R ++V+ LP + E E+L
Sbjct: 98 NTLNGLRLQTKTIKVSYARPSSASI-------------RDANLYVSGLPKTMTQKELEQL 144
Query: 249 FARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNG 286
F+++G I +S ++ D + +GFI F A A+ +NG
Sbjct: 145 FSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 150 (57.9 bits), Expect = 3.1e-12, Sum P(2) = 3.1e-12
Identities = 42/160 (26%), Positives = 81/160 (50%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L VN L ++ + + F G + ++ R+K +S G+ + + P +A+KA +
Sbjct: 41 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 100
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
NG + +K + +++ P + ++V L +T+ ++EL+ F ++G
Sbjct: 101 NGLRLQTKTIKVSYAR-----------PSSASIRDANLYVSGLPKTMTQKELEQLFSQYG 149
Query: 156 NIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEMNGR 194
II +I+ D+ G S+G GFI+F AE+AI +NG+
Sbjct: 150 RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 189
Score = 123 (48.4 bits), Expect = 5.9e-05, P = 5.9e-05
Identities = 29/76 (38%), Positives = 40/76 (52%)
Query: 228 KNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDK------HIGFIEFIMPKHATHAV 281
K + V LP N+ EF LF G I S LV DK GF+ +I PK A A+
Sbjct: 38 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 97
Query: 282 STMNGHVFKSKPLKVT 297
+T+NG ++K +KV+
Sbjct: 98 NTLNGLRLQTKTIKVS 113
Score = 115 (45.5 bits), Expect = 0.00048, P = 0.00048
Identities = 27/62 (43%), Positives = 34/62 (54%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAIIEM 191
+FV NL DE L F FG + VK++RD N K KGFGF+ +Y A AI +
Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 351
Query: 192 NG 193
NG
Sbjct: 352 NG 353
Score = 78 (32.5 bits), Expect = 3.1e-12, Sum P(2) = 3.1e-12
Identities = 21/78 (26%), Positives = 37/78 (47%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTM 284
IFV NL + + S +LF FG + + ++ D K GF+ A A++++
Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 351
Query: 285 NGHVFKSKPLKVTLSGTK 302
NG+ + L+V+ K
Sbjct: 352 NGYRLGDRVLQVSFKTNK 369
>UNIPROTKB|O09032 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV
CTD:1996 OMA:SNSRNCP EMBL:S83320 IPI:IPI00560167
RefSeq:NP_001071119.1 UniGene:Rn.134702 ProteinModelPortal:O09032
SMR:O09032 STRING:O09032 PhosphoSite:O09032 GeneID:432358
KEGG:rno:432358 UCSC:RGD:1560027 InParanoid:O09032 NextBio:696819
ArrayExpress:O09032 Genevestigator:O09032
GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 178 (67.7 bits), Expect = 2.6e-11, P = 2.6e-11
Identities = 50/164 (30%), Positives = 79/164 (48%)
Query: 130 KDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAI 188
K + V L + + +EE +S F G I K+VRD+ G+S G+GF+ + K AEKAI
Sbjct: 38 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 97
Query: 189 IEMNGRMIQHNSTFVSLAEIXXXXXXXXXXXXXLLQPARKNKIFVANLPSNINNSEFEEL 248
+NG +Q + VS A R ++V+ LP + E E+L
Sbjct: 98 NTLNGLRLQTKTIKVSYARPSSASI-------------RDANLYVSGLPKTMTQKELEQL 144
Query: 249 FARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNG 286
F+++G I +S ++ D + +GFI F A A+ +NG
Sbjct: 145 FSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 150 (57.9 bits), Expect = 3.1e-12, Sum P(2) = 3.1e-12
Identities = 42/160 (26%), Positives = 81/160 (50%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L VN L ++ + + F G + ++ R+K +S G+ + + P +A+KA +
Sbjct: 41 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 100
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
NG + +K + +++ P + ++V L +T+ ++EL+ F ++G
Sbjct: 101 NGLRLQTKTIKVSYAR-----------PSSASIRDANLYVSGLPKTMTQKELEQLFSQYG 149
Query: 156 NIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEMNGR 194
II +I+ D+ G S+G GFI+F AE+AI +NG+
Sbjct: 150 RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 189
Score = 123 (48.4 bits), Expect = 5.9e-05, P = 5.9e-05
Identities = 29/76 (38%), Positives = 40/76 (52%)
Query: 228 KNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDK------HIGFIEFIMPKHATHAV 281
K + V LP N+ EF LF G I S LV DK GF+ +I PK A A+
Sbjct: 38 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 97
Query: 282 STMNGHVFKSKPLKVT 297
+T+NG ++K +KV+
Sbjct: 98 NTLNGLRLQTKTIKVS 113
Score = 115 (45.5 bits), Expect = 0.00048, P = 0.00048
Identities = 27/62 (43%), Positives = 34/62 (54%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAIIEM 191
+FV NL DE L F FG + VK++RD N K KGFGF+ +Y A AI +
Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 351
Query: 192 NG 193
NG
Sbjct: 352 NG 353
Score = 78 (32.5 bits), Expect = 3.1e-12, Sum P(2) = 3.1e-12
Identities = 21/78 (26%), Positives = 37/78 (47%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTM 284
IFV NL + + S +LF FG + + ++ D K GF+ A A++++
Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 351
Query: 285 NGHVFKSKPLKVTLSGTK 302
NG+ + L+V+ K
Sbjct: 352 NGYRLGDRVLQVSFKTNK 369
>ZFIN|ZDB-GENE-990415-245 [details] [associations]
symbol:elavl1 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 1 (Hu antigen R)" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-245 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:BX649372 IPI:IPI00817195
PRIDE:F1QM02 Ensembl:ENSDART00000146123 ArrayExpress:F1QM02
Bgee:F1QM02 Uniprot:F1QM02
Length = 340
Score = 163 (62.4 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 45/164 (27%), Positives = 79/164 (48%)
Query: 130 KDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAI 188
K + V L + + ++EL+S F G + K++RD+ G S G+GF+ + + AE+AI
Sbjct: 33 KTNLIVNYLPQNMSQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNPNDAERAI 92
Query: 189 IEMNGRMIQHNSTFVSLAEIXXXXXXXXXXXXXLLQPARKNKIFVANLPSNINNSEFEEL 248
+NG +Q + VS A ++ A ++++ LP + + EE+
Sbjct: 93 STLNGLRLQSKTIKVSYARPSSDS----------IKDAN---LYISGLPKTMTQKDVEEM 139
Query: 249 FARFGTITSSSLVSDKHIG------FIEFIMPKHATHAVSTMNG 286
F R+G I +S ++ D+ G FI F A A+ +NG
Sbjct: 140 FGRYGRIINSRVLVDQASGLSRGVAFIRFDKRAEAEDAIKDLNG 183
Score = 146 (56.5 bits), Expect = 3.1e-12, Sum P(2) = 3.1e-12
Identities = 39/160 (24%), Positives = 80/160 (50%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L VN L ++ L + F G + ++ R+K S G+ + + P +A++A +
Sbjct: 36 LIVNYLPQNMSQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNPNDAERAISTL 95
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
NG + SK + +++ P K +++ L +T+ +++++ F ++G
Sbjct: 96 NGLRLQSKTIKVSYAR-----------PSSDSIKDANLYISGLPKTMTQKDVEEMFGRYG 144
Query: 156 NIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEMNGR 194
II +++ D+ +G S+G FI+F AE AI ++NG+
Sbjct: 145 RIINSRVLVDQASGLSRGVAFIRFDKRAEAEDAIKDLNGQ 184
Score = 123 (48.4 bits), Expect = 5.0e-05, P = 5.0e-05
Identities = 27/76 (35%), Positives = 42/76 (55%)
Query: 228 KNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDK---H---IGFIEFIMPKHATHAV 281
K + V LP N++ E LF+ G + S+ L+ DK H GF+ ++ P A A+
Sbjct: 33 KTNLIVNYLPQNMSQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNPNDAERAI 92
Query: 282 STMNGHVFKSKPLKVT 297
ST+NG +SK +KV+
Sbjct: 93 STLNGLRLQSKTIKVS 108
Score = 118 (46.6 bits), Expect = 0.00018, P = 0.00018
Identities = 26/62 (41%), Positives = 35/62 (56%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAIIEM 191
+F+ NL + DE L F FG + VK++RD N K KGFGF+ Y+ A AI +
Sbjct: 260 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTHYEEAAMAIASL 319
Query: 192 NG 193
NG
Sbjct: 320 NG 321
Score = 81 (33.6 bits), Expect = 3.1e-12, Sum P(2) = 3.1e-12
Identities = 20/78 (25%), Positives = 39/78 (50%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTM 284
IF+ NL + + ++F FG +T+ ++ D K GF+ + A A++++
Sbjct: 260 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTHYEEAAMAIASL 319
Query: 285 NGHVFKSKPLKVTLSGTK 302
NG+ K L+V+ +K
Sbjct: 320 NGYRLGDKILQVSFKTSK 337
>UNIPROTKB|D3K5N7 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1" species:9823 "Sus scrofa" [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0019901
"protein kinase binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727
GO:GO:0070935 CTD:1994 KO:K13088 OrthoDB:EOG4Z8XWZ
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:CU929699 EMBL:GU373715 RefSeq:NP_001182263.1 UniGene:Ssc.4516
ProteinModelPortal:D3K5N7 Ensembl:ENSSSCT00000014844
GeneID:100337681 KEGG:ssc:100337681 Uniprot:D3K5N7
Length = 326
Score = 175 (66.7 bits), Expect = 3.9e-11, P = 3.9e-11
Identities = 50/176 (28%), Positives = 88/176 (50%)
Query: 130 KDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAI 188
+ + V L + + +EEL+S F G I K++RD+ G S G+GF+ + + K AE+AI
Sbjct: 19 RTNLIVNYLPQNMTQEELRSLFSSIGEIESAKLIRDKVAGHSLGYGFVNYVTAKDAERAI 78
Query: 189 IEMNGRMIQHNSTFVSLAEIXXXXXXXXXXXXXLLQPARKNKIFVANLPSNINNSEFEEL 248
+NG +Q + VS A +++ A ++++ LP + + E++
Sbjct: 79 NTLNGLRLQSKTIKVSYAR----------PSSEVIKDAN---LYISGLPRTMTQKDVEDM 125
Query: 249 FARFGTITSSSLVSDKHIG------FIEFIMPKHATHAVSTMNGHV--FKSKPLKV 296
F+ FG I +S ++ D+ G FI F A A+++ NGH S+P+ V
Sbjct: 126 FSPFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITV 181
Score = 145 (56.1 bits), Expect = 3.3e-12, Sum P(2) = 3.3e-12
Identities = 40/159 (25%), Positives = 77/159 (48%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L VN L ++ + L + F G + ++ R+K S G+ + + T +A++A +
Sbjct: 22 LIVNYLPQNMTQEELRSLFSSIGEIESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 81
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
NG + SK + +++ P + K +++ L T+ +++++ F FG
Sbjct: 82 NGLRLQSKTIKVSYAR-----------PSSEVIKDANLYISGLPRTMTQKDVEDMFSPFG 130
Query: 156 NIIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAIIEMNG 193
II +++ D+ G S+G FI+F AE+AI NG
Sbjct: 131 RIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 169
Score = 121 (47.7 bits), Expect = 2.6e-09, Sum P(2) = 2.6e-09
Identities = 26/62 (41%), Positives = 36/62 (58%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAIIEM 191
+F+ NL + DE L F FG + VK++RD N K KGFGF+ +Y+ A AI +
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEASMAIASL 305
Query: 192 NG 193
NG
Sbjct: 306 NG 307
Score = 116 (45.9 bits), Expect = 0.00028, P = 0.00028
Identities = 26/76 (34%), Positives = 41/76 (53%)
Query: 228 KNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDK---H---IGFIEFIMPKHATHAV 281
+ + V LP N+ E LF+ G I S+ L+ DK H GF+ ++ K A A+
Sbjct: 19 RTNLIVNYLPQNMTQEELRSLFSSIGEIESAKLIRDKVAGHSLGYGFVNYVTAKDAERAI 78
Query: 282 STMNGHVFKSKPLKVT 297
+T+NG +SK +KV+
Sbjct: 79 NTLNGLRLQSKTIKVS 94
Score = 81 (33.6 bits), Expect = 3.3e-12, Sum P(2) = 3.3e-12
Identities = 20/78 (25%), Positives = 39/78 (50%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTM 284
IF+ NL + + ++F FG +T+ ++ D K GF+ + A+ A++++
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEASMAIASL 305
Query: 285 NGHVFKSKPLKVTLSGTK 302
NG+ K L+V+ K
Sbjct: 306 NGYRLGDKILQVSFKTNK 323
Score = 81 (33.6 bits), Expect = 2.6e-09, Sum P(2) = 2.6e-09
Identities = 24/83 (28%), Positives = 43/83 (51%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDE-SRGFAIIVFNTPAEAKKARVEM 95
L+++ L ++ + + + F FG + + RV ++ SRG A I F+ +EA++A
Sbjct: 108 LYISGLPRTMTQKDVEDMFSPFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSF 167
Query: 96 NGHLI--GSKPVIITFVELKPGQ 116
NGH S+P+ + F P Q
Sbjct: 168 NGHKPPGSSEPITVKFAA-NPNQ 189
>UNIPROTKB|P26378 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:CH471059
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0003730
eggNOG:COG0724 EMBL:AL645730 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 EMBL:M62843
EMBL:AY033995 EMBL:AY033996 EMBL:AY033997 EMBL:AY033998
EMBL:AK297338 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
EMBL:BC036071 IPI:IPI00395507 IPI:IPI00479625 IPI:IPI00607677
IPI:IPI00644588 IPI:IPI00978372 PIR:A40348 RefSeq:NP_001138246.1
RefSeq:NP_001138247.1 RefSeq:NP_001138248.1 RefSeq:NP_001138249.1
RefSeq:NP_068771.2 UniGene:Hs.213050 PDB:1FXL PDB:1G2E PDBsum:1FXL
PDBsum:1G2E ProteinModelPortal:P26378 SMR:P26378 IntAct:P26378
MINT:MINT-1471928 STRING:P26378 PhosphoSite:P26378 DMDM:223590202
PaxDb:P26378 PRIDE:P26378 Ensembl:ENST00000357083
Ensembl:ENST00000371823 Ensembl:ENST00000371824
Ensembl:ENST00000371827 Ensembl:ENST00000448907 GeneID:1996
KEGG:hsa:1996 UCSC:uc001crz.3 UCSC:uc001csa.3 UCSC:uc001csb.2
UCSC:uc001csc.3 CTD:1996 GeneCards:GC01P050513 HGNC:HGNC:3315
HPA:CAB004442 MIM:168360 neXtProt:NX_P26378 PharmGKB:PA27743
EvolutionaryTrace:P26378 GenomeRNAi:1996 NextBio:8073
ArrayExpress:P26378 Bgee:P26378 CleanEx:HS_ELAVL4
Genevestigator:P26378 GermOnline:ENSG00000162374 Uniprot:P26378
Length = 380
Score = 178 (67.7 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 50/164 (30%), Positives = 79/164 (48%)
Query: 130 KDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAI 188
K + V L + + +EE +S F G I K+VRD+ G+S G+GF+ + K AEKAI
Sbjct: 45 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 104
Query: 189 IEMNGRMIQHNSTFVSLAEIXXXXXXXXXXXXXLLQPARKNKIFVANLPSNINNSEFEEL 248
+NG +Q + VS A R ++V+ LP + E E+L
Sbjct: 105 NTLNGLRLQTKTIKVSYARPSSASI-------------RDANLYVSGLPKTMTQKELEQL 151
Query: 249 FARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNG 286
F+++G I +S ++ D + +GFI F A A+ +NG
Sbjct: 152 FSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 195
Score = 150 (57.9 bits), Expect = 3.4e-12, Sum P(2) = 3.4e-12
Identities = 42/160 (26%), Positives = 81/160 (50%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L VN L ++ + + F G + ++ R+K +S G+ + + P +A+KA +
Sbjct: 48 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 107
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
NG + +K + +++ P + ++V L +T+ ++EL+ F ++G
Sbjct: 108 NGLRLQTKTIKVSYAR-----------PSSASIRDANLYVSGLPKTMTQKELEQLFSQYG 156
Query: 156 NIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEMNGR 194
II +I+ D+ G S+G GFI+F AE+AI +NG+
Sbjct: 157 RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 196
Score = 123 (48.4 bits), Expect = 6.1e-05, P = 6.1e-05
Identities = 29/76 (38%), Positives = 40/76 (52%)
Query: 228 KNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDK------HIGFIEFIMPKHATHAV 281
K + V LP N+ EF LF G I S LV DK GF+ +I PK A A+
Sbjct: 45 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 104
Query: 282 STMNGHVFKSKPLKVT 297
+T+NG ++K +KV+
Sbjct: 105 NTLNGLRLQTKTIKVS 120
Score = 115 (45.5 bits), Expect = 0.00049, P = 0.00049
Identities = 27/62 (43%), Positives = 34/62 (54%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAIIEM 191
+FV NL DE L F FG + VK++RD N K KGFGF+ +Y A AI +
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358
Query: 192 NG 193
NG
Sbjct: 359 NG 360
Score = 78 (32.5 bits), Expect = 3.4e-12, Sum P(2) = 3.4e-12
Identities = 21/78 (26%), Positives = 37/78 (47%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTM 284
IFV NL + + S +LF FG + + ++ D K GF+ A A++++
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358
Query: 285 NGHVFKSKPLKVTLSGTK 302
NG+ + L+V+ K
Sbjct: 359 NGYRLGDRVLQVSFKTNK 376
>UNIPROTKB|F1LRX3 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 IPI:IPI00808644
Ensembl:ENSRNOT00000067007 ArrayExpress:F1LRX3 Uniprot:F1LRX3
Length = 380
Score = 178 (67.7 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 50/164 (30%), Positives = 79/164 (48%)
Query: 130 KDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAI 188
K + V L + + +EE +S F G I K+VRD+ G+S G+GF+ + K AEKAI
Sbjct: 45 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 104
Query: 189 IEMNGRMIQHNSTFVSLAEIXXXXXXXXXXXXXLLQPARKNKIFVANLPSNINNSEFEEL 248
+NG +Q + VS A R ++V+ LP + E E+L
Sbjct: 105 NTLNGLRLQTKTIKVSYARPSSASI-------------RDANLYVSGLPKTMTQKELEQL 151
Query: 249 FARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNG 286
F+++G I +S ++ D + +GFI F A A+ +NG
Sbjct: 152 FSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 195
Score = 150 (57.9 bits), Expect = 3.4e-12, Sum P(2) = 3.4e-12
Identities = 42/160 (26%), Positives = 81/160 (50%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L VN L ++ + + F G + ++ R+K +S G+ + + P +A+KA +
Sbjct: 48 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 107
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
NG + +K + +++ P + ++V L +T+ ++EL+ F ++G
Sbjct: 108 NGLRLQTKTIKVSYAR-----------PSSASIRDANLYVSGLPKTMTQKELEQLFSQYG 156
Query: 156 NIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEMNGR 194
II +I+ D+ G S+G GFI+F AE+AI +NG+
Sbjct: 157 RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 196
Score = 123 (48.4 bits), Expect = 6.1e-05, P = 6.1e-05
Identities = 29/76 (38%), Positives = 40/76 (52%)
Query: 228 KNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDK------HIGFIEFIMPKHATHAV 281
K + V LP N+ EF LF G I S LV DK GF+ +I PK A A+
Sbjct: 45 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 104
Query: 282 STMNGHVFKSKPLKVT 297
+T+NG ++K +KV+
Sbjct: 105 NTLNGLRLQTKTIKVS 120
Score = 115 (45.5 bits), Expect = 0.00049, P = 0.00049
Identities = 27/62 (43%), Positives = 34/62 (54%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAIIEM 191
+FV NL DE L F FG + VK++RD N K KGFGF+ +Y A AI +
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358
Query: 192 NG 193
NG
Sbjct: 359 NG 360
Score = 78 (32.5 bits), Expect = 3.4e-12, Sum P(2) = 3.4e-12
Identities = 21/78 (26%), Positives = 37/78 (47%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTM 284
IFV NL + + S +LF FG + + ++ D K GF+ A A++++
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358
Query: 285 NGHVFKSKPLKVTLSGTK 302
NG+ + L+V+ K
Sbjct: 359 NGYRLGDRVLQVSFKTNK 376
>TAIR|locus:2077392 [details] [associations]
symbol:AT3G07810 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005576 "extracellular region" evidence=ISM] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 IPI:IPI00546643 RefSeq:NP_850539.1 UniGene:At.19375
ProteinModelPortal:F4JFN7 SMR:F4JFN7 PRIDE:F4JFN7
EnsemblPlants:AT3G07810.2 GeneID:819972 KEGG:ath:AT3G07810
OMA:YYIGNTN Uniprot:F4JFN7
Length = 495
Score = 188 (71.2 bits), Expect = 3.4e-12, P = 3.4e-12
Identities = 58/214 (27%), Positives = 97/214 (45%)
Query: 127 QYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDEN-GKSKGFGFIQFFSYKAAE 185
Q K+F+ + +EE LK +F FG +IE I++D G+++GFGF+ F AE
Sbjct: 2 QSDNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAE 61
Query: 186 KAIIE---MNGRMIQHNSTFVSLAEIXXXXXXXXXXXXXLLQPARKNKIFVANLPSNINN 242
I E ++GR+++ + P R KIFV LPS++
Sbjct: 62 IVITEKHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTE 121
Query: 243 SEFEELFARFGTITSSSLVSDKH------IGFIEFIMPKHATHAVSTMNGHVFKSKPLKV 296
S+F+ F +FGT T ++ D + GFI + + A V H K ++V
Sbjct: 122 SDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDS-EEAVEKVLLKTFHELNGKMVEV 180
Query: 297 TLSGTKPGVSITNPTKAPKKPAY---IDEVKNVI 327
+ K +S P+++P Y ++ V N++
Sbjct: 181 KRAVPKE-LS-PGPSRSPLGAGYSYGVNRVNNLL 212
Score = 163 (62.4 bits), Expect = 2.8e-09, P = 2.8e-09
Identities = 45/172 (26%), Positives = 85/172 (49%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKND-ESRGFAIIVFNTPAEAKKARVE- 94
L + + + + L F FG + + + +++ +RGF +VF PA A+ E
Sbjct: 8 LFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITEK 67
Query: 95 --MNGHLIGSKPVIITFVE--LKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
++G L+ +K + + + S G + K+FV L +V E + K++
Sbjct: 68 HNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTESDFKTY 127
Query: 151 FIKFGNIIEVKIVRDENG-KSKGFGFIQFFSYKAAEKAII----EMNGRMIQ 197
F +FG +V ++ D N + +GFGFI + S +A EK ++ E+NG+M++
Sbjct: 128 FEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVE 179
>UNIPROTKB|F1P856 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:SNSRNCP EMBL:AAEX03009733
Ensembl:ENSCAFT00000006315 Uniprot:F1P856
Length = 382
Score = 178 (67.7 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 50/164 (30%), Positives = 79/164 (48%)
Query: 130 KDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAI 188
K + V L + + +EE +S F G I K+VRD+ G+S G+GF+ + K AEKAI
Sbjct: 61 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 120
Query: 189 IEMNGRMIQHNSTFVSLAEIXXXXXXXXXXXXXLLQPARKNKIFVANLPSNINNSEFEEL 248
+NG +Q + VS A R ++V+ LP + E E+L
Sbjct: 121 NTLNGLRLQTKTIKVSYARPSSASI-------------RDANLYVSGLPKTMTQKELEQL 167
Query: 249 FARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNG 286
F+++G I +S ++ D + +GFI F A A+ +NG
Sbjct: 168 FSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 211
Score = 150 (57.9 bits), Expect = 3.4e-12, Sum P(2) = 3.4e-12
Identities = 42/160 (26%), Positives = 81/160 (50%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L VN L ++ + + F G + ++ R+K +S G+ + + P +A+KA +
Sbjct: 64 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 123
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
NG + +K + +++ P + ++V L +T+ ++EL+ F ++G
Sbjct: 124 NGLRLQTKTIKVSYAR-----------PSSASIRDANLYVSGLPKTMTQKELEQLFSQYG 172
Query: 156 NIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEMNGR 194
II +I+ D+ G S+G GFI+F AE+AI +NG+
Sbjct: 173 RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 212
Score = 123 (48.4 bits), Expect = 6.2e-05, P = 6.2e-05
Identities = 29/76 (38%), Positives = 40/76 (52%)
Query: 228 KNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDK------HIGFIEFIMPKHATHAV 281
K + V LP N+ EF LF G I S LV DK GF+ +I PK A A+
Sbjct: 61 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 120
Query: 282 STMNGHVFKSKPLKVT 297
+T+NG ++K +KV+
Sbjct: 121 NTLNGLRLQTKTIKVS 136
Score = 115 (45.5 bits), Expect = 0.00049, P = 0.00049
Identities = 27/62 (43%), Positives = 34/62 (54%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAIIEM 191
+FV NL DE L F FG + VK++RD N K KGFGF+ +Y A AI +
Sbjct: 301 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 360
Query: 192 NG 193
NG
Sbjct: 361 NG 362
Score = 78 (32.5 bits), Expect = 3.4e-12, Sum P(2) = 3.4e-12
Identities = 21/78 (26%), Positives = 37/78 (47%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTM 284
IFV NL + + S +LF FG + + ++ D K GF+ A A++++
Sbjct: 301 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 360
Query: 285 NGHVFKSKPLKVTLSGTK 302
NG+ + L+V+ K
Sbjct: 361 NGYRLGDRVLQVSFKTNK 378
>CGD|CAL0005232 [details] [associations]
symbol:orf19.6090 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0005232 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AACQ01000036 EMBL:AACQ01000035 GO:GO:0044011
eggNOG:COG0724 KO:K11294 RefSeq:XP_718946.1 RefSeq:XP_719050.1
ProteinModelPortal:Q5AB84 STRING:Q5AB84 GeneID:3639341
GeneID:3639464 KEGG:cal:CaO19.13509 KEGG:cal:CaO19.6090
Uniprot:Q5AB84
Length = 400
Score = 186 (70.5 bits), Expect = 3.5e-12, P = 3.5e-12
Identities = 51/169 (30%), Positives = 83/169 (49%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L V L ++D+ L EF+ G + RV + +SRG+ + F + + A+KA EM
Sbjct: 170 LFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYGYVDFESKSAAEKALEEM 229
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQY------KKDKVFVKNLVETVDEEELKS 149
G I +P+ + KP SK KQY D +F+ NL + + L +
Sbjct: 230 QGKEIDGRPINLDMSTGKP-HASKSNNDRAKQYGDSQSPPSDTLFIGNLSFNANRDNLFN 288
Query: 150 HFIKFGNIIEVKI-VRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQ 197
F ++GN+I ++ + + KGFG++QF S A+ A+ MNG I+
Sbjct: 289 VFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAALEAMNGEYIE 337
Score = 181 (68.8 bits), Expect = 1.4e-11, P = 1.4e-11
Identities = 51/209 (24%), Positives = 89/209 (42%)
Query: 111 ELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGK 169
E P ++SKP E+ +FV L +D+ LK F G +I +++ + GK
Sbjct: 151 ESAPVKKSKPAASTEEPAT---LFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGK 207
Query: 170 SKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXXXXXXXXLL---QPA 226
S+G+G++ F S AAEKA+ EM G+ I + ++ Q
Sbjct: 208 SRGYGYVDFESKSAAEKALEEMQGKEIDGRPINLDMSTGKPHASKSNNDRAKQYGDSQSP 267
Query: 227 RKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHA 280
+ +F+ NL N N +F +G + S + + K G+++F A A
Sbjct: 268 PSDTLFIGNLSFNANRDNLFNVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAA 327
Query: 281 VSTMNGHVFKSKPLKVTLSGTKPGVSITN 309
+ MNG + +P ++ S + + N
Sbjct: 328 LEAMNGEYIEGRPCRLDFSTPRDNTNNNN 356
>UNIPROTKB|Q5AB84 [details] [associations]
symbol:NSR1 "Potential nuclear localization sequence
binding protein Nsr1p" species:237561 "Candida albicans SC5314"
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 CGD:CAL0005232
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000036
EMBL:AACQ01000035 GO:GO:0044011 eggNOG:COG0724 KO:K11294
RefSeq:XP_718946.1 RefSeq:XP_719050.1 ProteinModelPortal:Q5AB84
STRING:Q5AB84 GeneID:3639341 GeneID:3639464 KEGG:cal:CaO19.13509
KEGG:cal:CaO19.6090 Uniprot:Q5AB84
Length = 400
Score = 186 (70.5 bits), Expect = 3.5e-12, P = 3.5e-12
Identities = 51/169 (30%), Positives = 83/169 (49%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L V L ++D+ L EF+ G + RV + +SRG+ + F + + A+KA EM
Sbjct: 170 LFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYGYVDFESKSAAEKALEEM 229
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQY------KKDKVFVKNLVETVDEEELKS 149
G I +P+ + KP SK KQY D +F+ NL + + L +
Sbjct: 230 QGKEIDGRPINLDMSTGKP-HASKSNNDRAKQYGDSQSPPSDTLFIGNLSFNANRDNLFN 288
Query: 150 HFIKFGNIIEVKI-VRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQ 197
F ++GN+I ++ + + KGFG++QF S A+ A+ MNG I+
Sbjct: 289 VFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAALEAMNGEYIE 337
Score = 181 (68.8 bits), Expect = 1.4e-11, P = 1.4e-11
Identities = 51/209 (24%), Positives = 89/209 (42%)
Query: 111 ELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGK 169
E P ++SKP E+ +FV L +D+ LK F G +I +++ + GK
Sbjct: 151 ESAPVKKSKPAASTEEPAT---LFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGK 207
Query: 170 SKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXXXXXXXXLL---QPA 226
S+G+G++ F S AAEKA+ EM G+ I + ++ Q
Sbjct: 208 SRGYGYVDFESKSAAEKALEEMQGKEIDGRPINLDMSTGKPHASKSNNDRAKQYGDSQSP 267
Query: 227 RKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHA 280
+ +F+ NL N N +F +G + S + + K G+++F A A
Sbjct: 268 PSDTLFIGNLSFNANRDNLFNVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAA 327
Query: 281 VSTMNGHVFKSKPLKVTLSGTKPGVSITN 309
+ MNG + +P ++ S + + N
Sbjct: 328 LEAMNGEYIEGRPCRLDFSTPRDNTNNNN 356
>UNIPROTKB|F1LRL1 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 TIGRFAMs:TIGR01661 IPI:IPI00763452
Ensembl:ENSRNOT00000064277 ArrayExpress:F1LRL1 Uniprot:F1LRL1
Length = 384
Score = 178 (67.7 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 50/164 (30%), Positives = 79/164 (48%)
Query: 130 KDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAI 188
K + V L + + +EE +S F G I K+VRD+ G+S G+GF+ + K AEKAI
Sbjct: 49 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 108
Query: 189 IEMNGRMIQHNSTFVSLAEIXXXXXXXXXXXXXLLQPARKNKIFVANLPSNINNSEFEEL 248
+NG +Q + VS A R ++V+ LP + E E+L
Sbjct: 109 NTLNGLRLQTKTIKVSYARPSSASI-------------RDANLYVSGLPKTMTQKELEQL 155
Query: 249 FARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNG 286
F+++G I +S ++ D + +GFI F A A+ +NG
Sbjct: 156 FSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 199
Score = 150 (57.9 bits), Expect = 3.5e-12, Sum P(2) = 3.5e-12
Identities = 42/160 (26%), Positives = 81/160 (50%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L VN L ++ + + F G + ++ R+K +S G+ + + P +A+KA +
Sbjct: 52 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 111
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
NG + +K + +++ P + ++V L +T+ ++EL+ F ++G
Sbjct: 112 NGLRLQTKTIKVSYAR-----------PSSASIRDANLYVSGLPKTMTQKELEQLFSQYG 160
Query: 156 NIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEMNGR 194
II +I+ D+ G S+G GFI+F AE+AI +NG+
Sbjct: 161 RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 200
Score = 123 (48.4 bits), Expect = 6.3e-05, P = 6.3e-05
Identities = 29/76 (38%), Positives = 40/76 (52%)
Query: 228 KNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDK------HIGFIEFIMPKHATHAV 281
K + V LP N+ EF LF G I S LV DK GF+ +I PK A A+
Sbjct: 49 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 108
Query: 282 STMNGHVFKSKPLKVT 297
+T+NG ++K +KV+
Sbjct: 109 NTLNGLRLQTKTIKVS 124
Score = 115 (45.5 bits), Expect = 0.00050, P = 0.00050
Identities = 27/62 (43%), Positives = 34/62 (54%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAIIEM 191
+FV NL DE L F FG + VK++RD N K KGFGF+ +Y A AI +
Sbjct: 303 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 362
Query: 192 NG 193
NG
Sbjct: 363 NG 364
Score = 78 (32.5 bits), Expect = 3.5e-12, Sum P(2) = 3.5e-12
Identities = 21/78 (26%), Positives = 37/78 (47%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTM 284
IFV NL + + S +LF FG + + ++ D K GF+ A A++++
Sbjct: 303 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 362
Query: 285 NGHVFKSKPLKVTLSGTK 302
NG+ + L+V+ K
Sbjct: 363 NGYRLGDRVLQVSFKTNK 380
>UNIPROTKB|B1APY8 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AL583843 EMBL:AL592182
EMBL:AL731870 UniGene:Hs.213050 HGNC:HGNC:3315 OMA:SNSRNCP
IPI:IPI00513758 SMR:B1APY8 STRING:B1APY8 Ensembl:ENST00000371821
Uniprot:B1APY8
Length = 385
Score = 178 (67.7 bits), Expect = 2.9e-11, P = 2.9e-11
Identities = 50/164 (30%), Positives = 79/164 (48%)
Query: 130 KDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAI 188
K + V L + + +EE +S F G I K+VRD+ G+S G+GF+ + K AEKAI
Sbjct: 50 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 109
Query: 189 IEMNGRMIQHNSTFVSLAEIXXXXXXXXXXXXXLLQPARKNKIFVANLPSNINNSEFEEL 248
+NG +Q + VS A R ++V+ LP + E E+L
Sbjct: 110 NTLNGLRLQTKTIKVSYARPSSASI-------------RDANLYVSGLPKTMTQKELEQL 156
Query: 249 FARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNG 286
F+++G I +S ++ D + +GFI F A A+ +NG
Sbjct: 157 FSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 200
Score = 150 (57.9 bits), Expect = 3.5e-12, Sum P(2) = 3.5e-12
Identities = 42/160 (26%), Positives = 81/160 (50%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L VN L ++ + + F G + ++ R+K +S G+ + + P +A+KA +
Sbjct: 53 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 112
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
NG + +K + +++ P + ++V L +T+ ++EL+ F ++G
Sbjct: 113 NGLRLQTKTIKVSYAR-----------PSSASIRDANLYVSGLPKTMTQKELEQLFSQYG 161
Query: 156 NIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEMNGR 194
II +I+ D+ G S+G GFI+F AE+AI +NG+
Sbjct: 162 RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 201
Score = 123 (48.4 bits), Expect = 6.3e-05, P = 6.3e-05
Identities = 29/76 (38%), Positives = 40/76 (52%)
Query: 228 KNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDK------HIGFIEFIMPKHATHAV 281
K + V LP N+ EF LF G I S LV DK GF+ +I PK A A+
Sbjct: 50 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 109
Query: 282 STMNGHVFKSKPLKVT 297
+T+NG ++K +KV+
Sbjct: 110 NTLNGLRLQTKTIKVS 125
Score = 115 (45.5 bits), Expect = 0.00050, P = 0.00050
Identities = 27/62 (43%), Positives = 34/62 (54%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAIIEM 191
+FV NL DE L F FG + VK++RD N K KGFGF+ +Y A AI +
Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 363
Query: 192 NG 193
NG
Sbjct: 364 NG 365
Score = 78 (32.5 bits), Expect = 3.5e-12, Sum P(2) = 3.5e-12
Identities = 21/78 (26%), Positives = 37/78 (47%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTM 284
IFV NL + + S +LF FG + + ++ D K GF+ A A++++
Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 363
Query: 285 NGHVFKSKPLKVTLSGTK 302
NG+ + L+V+ K
Sbjct: 364 NGYRLGDRVLQVSFKTNK 381
>MGI|MGI:107427 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4 (Hu antigen D)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:107427 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 EMBL:AL627425 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
EMBL:D31953 EMBL:AF041341 IPI:IPI00229977 IPI:IPI00466120
PIR:JC2298 RefSeq:NP_034618.2 UniGene:Mm.3970
ProteinModelPortal:Q61701 SMR:Q61701 STRING:Q61701
PhosphoSite:Q61701 PaxDb:Q61701 PRIDE:Q61701
Ensembl:ENSMUST00000106597 GeneID:15572 KEGG:mmu:15572
InParanoid:A2A9R7 OMA:SNSRNCP NextBio:288560 Bgee:Q61701
Genevestigator:Q61701 GermOnline:ENSMUSG00000028546 Uniprot:Q61701
Length = 385
Score = 178 (67.7 bits), Expect = 2.9e-11, P = 2.9e-11
Identities = 50/164 (30%), Positives = 79/164 (48%)
Query: 130 KDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAI 188
K + V L + + +EE +S F G I K+VRD+ G+S G+GF+ + K AEKAI
Sbjct: 50 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 109
Query: 189 IEMNGRMIQHNSTFVSLAEIXXXXXXXXXXXXXLLQPARKNKIFVANLPSNINNSEFEEL 248
+NG +Q + VS A R ++V+ LP + E E+L
Sbjct: 110 NTLNGLRLQTKTIKVSYARPSSASI-------------RDANLYVSGLPKTMTQKELEQL 156
Query: 249 FARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNG 286
F+++G I +S ++ D + +GFI F A A+ +NG
Sbjct: 157 FSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 200
Score = 150 (57.9 bits), Expect = 3.5e-12, Sum P(2) = 3.5e-12
Identities = 42/160 (26%), Positives = 81/160 (50%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L VN L ++ + + F G + ++ R+K +S G+ + + P +A+KA +
Sbjct: 53 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 112
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
NG + +K + +++ P + ++V L +T+ ++EL+ F ++G
Sbjct: 113 NGLRLQTKTIKVSYAR-----------PSSASIRDANLYVSGLPKTMTQKELEQLFSQYG 161
Query: 156 NIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEMNGR 194
II +I+ D+ G S+G GFI+F AE+AI +NG+
Sbjct: 162 RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 201
Score = 123 (48.4 bits), Expect = 6.3e-05, P = 6.3e-05
Identities = 29/76 (38%), Positives = 40/76 (52%)
Query: 228 KNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDK------HIGFIEFIMPKHATHAV 281
K + V LP N+ EF LF G I S LV DK GF+ +I PK A A+
Sbjct: 50 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 109
Query: 282 STMNGHVFKSKPLKVT 297
+T+NG ++K +KV+
Sbjct: 110 NTLNGLRLQTKTIKVS 125
Score = 115 (45.5 bits), Expect = 0.00050, P = 0.00050
Identities = 27/62 (43%), Positives = 34/62 (54%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAIIEM 191
+FV NL DE L F FG + VK++RD N K KGFGF+ +Y A AI +
Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 363
Query: 192 NG 193
NG
Sbjct: 364 NG 365
Score = 78 (32.5 bits), Expect = 3.5e-12, Sum P(2) = 3.5e-12
Identities = 21/78 (26%), Positives = 37/78 (47%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTM 284
IFV NL + + S +LF FG + + ++ D K GF+ A A++++
Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 363
Query: 285 NGHVFKSKPLKVTLSGTK 302
NG+ + L+V+ K
Sbjct: 364 NGYRLGDRVLQVSFKTNK 381
>FB|FBgn0004903 [details] [associations]
symbol:Rb97D "Ribonuclear protein at 97D" species:7227
"Drosophila melanogaster" [GO:0007286 "spermatid development"
evidence=IMP] [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0007283 "spermatogenesis" evidence=NAS] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE014297 GO:GO:0007275
GO:GO:0007286 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
eggNOG:COG0724 GeneTree:ENSGT00700000104255 EMBL:L02106
EMBL:BT001320 PIR:S33679 PIR:S33680 RefSeq:NP_001014671.1
RefSeq:NP_001014672.1 RefSeq:NP_001014673.1 RefSeq:NP_001014674.1
RefSeq:NP_001014675.1 RefSeq:NP_001014676.1 RefSeq:NP_001014677.1
RefSeq:NP_524520.1 RefSeq:NP_733172.1 UniGene:Dm.22918
ProteinModelPortal:Q02926 SMR:Q02926 DIP:DIP-18137N IntAct:Q02926
MINT:MINT-957540 STRING:Q02926 PaxDb:Q02926 PRIDE:Q02926
EnsemblMetazoa:FBtr0085093 EnsemblMetazoa:FBtr0100337
EnsemblMetazoa:FBtr0100339 EnsemblMetazoa:FBtr0100340 GeneID:43231
KEGG:dme:Dmel_CG6354 CTD:43231 FlyBase:FBgn0004903
InParanoid:Q02926 OMA:DICELEH OrthoDB:EOG43N5VC PhylomeDB:Q02926
ChiTaRS:Rb97D GenomeRNAi:43231 NextBio:832835 Bgee:Q02926
GermOnline:CG6354 Uniprot:Q02926
Length = 471
Score = 187 (70.9 bits), Expect = 4.0e-12, P = 4.0e-12
Identities = 49/156 (31%), Positives = 80/156 (51%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L + L P + L + ++G + DV V R+ SRGF I + +A+ E
Sbjct: 34 LFIGGLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFITYTKSLMVDRAQ-EN 92
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
H+I K V +P + S+ E K+FV L + DEE L+ +F++FG
Sbjct: 93 RPHIIDGKTVEAKRALPRPERESR-----ETNISVKKLFVGGLKDNHDEECLREYFLQFG 147
Query: 156 NIIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAIIE 190
N++ VK++ D+ GK +GF F++F Y A +KAI++
Sbjct: 148 NVVSVKLLTDKTTGKRRGFAFVEFDDYDAVDKAILK 183
Score = 117 (46.2 bits), Expect = 0.00041, P = 0.00041
Identities = 39/147 (26%), Positives = 64/147 (43%)
Query: 132 KVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGK-SKGFGFIQFFSYKAAEKAIIE 190
K+F+ L EE LK + ++G +++V ++RD K S+GFGFI + ++A +
Sbjct: 33 KLFIGGLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFITYTKSLMVDRA--Q 90
Query: 191 MNGRMIQHNSTFVSLAEIXXXXXXXXXXXXXLLQPARKNKIFVANLPSNINNSEFEELFA 250
N I T + + + K+FV L N + E F
Sbjct: 91 ENRPHIIDGKTVEAKRALPRPERESRETNISV------KKLFVGGLKDNHDEECLREYFL 144
Query: 251 RFGTITSSSLVSDKHIG------FIEF 271
+FG + S L++DK G F+EF
Sbjct: 145 QFGNVVSVKLLTDKTTGKRRGFAFVEF 171
>UNIPROTKB|Q15717 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IDA;IMP] [GO:0048255
"mRNA stabilization" evidence=IDA;IMP] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0019901 "protein kinase binding" evidence=IPI] [GO:0035925
"mRNA 3'-UTR AU-rich region binding" evidence=IDA] [GO:0045727
"positive regulation of translation" evidence=IDA] [GO:0003729
"mRNA binding" evidence=TAS] [GO:0007275 "multicellular organismal
development" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0007275 GO:GO:0005829 GO:GO:0010467 GO:GO:0016071
GO:GO:0005654 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0017091 EMBL:CH471139 GO:GO:0045727 eggNOG:COG0724
GO:GO:0070935 HOVERGEN:HBG002295 EMBL:U38175 EMBL:BT009793
EMBL:BC003376 IPI:IPI00940851 RefSeq:NP_001410.2 UniGene:Hs.184492
UniGene:Hs.713744 PDB:3HI9 PDB:4ED5 PDB:4EGL PDB:4FXV PDBsum:3HI9
PDBsum:4ED5 PDBsum:4EGL PDBsum:4FXV ProteinModelPortal:Q15717
SMR:Q15717 IntAct:Q15717 MINT:MINT-5001300 STRING:Q15717
PhosphoSite:Q15717 DMDM:20981691 PaxDb:Q15717 PeptideAtlas:Q15717
PRIDE:Q15717 DNASU:1994 Ensembl:ENST00000407627 GeneID:1994
KEGG:hsa:1994 UCSC:uc002mjb.3 CTD:1994 GeneCards:GC19M008023
HGNC:HGNC:3312 HPA:CAB005256 MIM:603466 neXtProt:NX_Q15717
PharmGKB:PA27740 HOGENOM:HOG000231162 InParanoid:Q15717 KO:K13088
OrthoDB:EOG4Z8XWZ PhylomeDB:Q15717 BindingDB:Q15717
ChEMBL:CHEMBL1250379 EvolutionaryTrace:Q15717 GenomeRNAi:1994
NextBio:8063 ArrayExpress:Q15717 Bgee:Q15717 CleanEx:HS_ELAVL1
Genevestigator:Q15717 GermOnline:ENSG00000066044 TIGRFAMs:TIGR01661
Uniprot:Q15717
Length = 326
Score = 178 (67.7 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 49/176 (27%), Positives = 89/176 (50%)
Query: 130 KDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAI 188
+ + V L + + ++EL+S F G + K++RD+ G S G+GF+ + + K AE+AI
Sbjct: 19 RTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAI 78
Query: 189 IEMNGRMIQHNSTFVSLAEIXXXXXXXXXXXXXLLQPARKNKIFVANLPSNINNSEFEEL 248
+NG +Q + VS A +++ A ++++ LP + + E++
Sbjct: 79 NTLNGLRLQSKTIKVSYAR----------PSSEVIKDAN---LYISGLPRTMTQKDVEDM 125
Query: 249 FARFGTITSSSLVSDKHIG------FIEFIMPKHATHAVSTMNGHV--FKSKPLKV 296
F+RFG I +S ++ D+ G FI F A A+++ NGH S+P+ V
Sbjct: 126 FSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITV 181
Score = 145 (56.1 bits), Expect = 4.2e-12, Sum P(2) = 4.2e-12
Identities = 40/159 (25%), Positives = 77/159 (48%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L VN L ++ L + F G + ++ R+K S G+ + + T +A++A +
Sbjct: 22 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 81
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
NG + SK + +++ P + K +++ L T+ +++++ F +FG
Sbjct: 82 NGLRLQSKTIKVSYAR-----------PSSEVIKDANLYISGLPRTMTQKDVEDMFSRFG 130
Query: 156 NIIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAIIEMNG 193
II +++ D+ G S+G FI+F AE+AI NG
Sbjct: 131 RIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 169
Score = 120 (47.3 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 26/62 (41%), Positives = 36/62 (58%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAIIEM 191
+F+ NL + DE L F FG + VK++RD N K KGFGF+ +Y+ A AI +
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 192 NG 193
NG
Sbjct: 306 NG 307
Score = 115 (45.5 bits), Expect = 0.00037, P = 0.00037
Identities = 25/76 (32%), Positives = 41/76 (53%)
Query: 228 KNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDK---H---IGFIEFIMPKHATHAV 281
+ + V LP N+ E LF+ G + S+ L+ DK H GF+ ++ K A A+
Sbjct: 19 RTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAI 78
Query: 282 STMNGHVFKSKPLKVT 297
+T+NG +SK +KV+
Sbjct: 79 NTLNGLRLQSKTIKVS 94
Score = 84 (34.6 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 24/83 (28%), Positives = 44/83 (53%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDE-SRGFAIIVFNTPAEAKKARVEM 95
L+++ L ++ + + + F +FG + + RV ++ SRG A I F+ +EA++A
Sbjct: 108 LYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSF 167
Query: 96 NGHLI--GSKPVIITFVELKPGQ 116
NGH S+P+ + F P Q
Sbjct: 168 NGHKPPGSSEPITVKFAA-NPNQ 189
Score = 80 (33.2 bits), Expect = 4.2e-12, Sum P(2) = 4.2e-12
Identities = 20/78 (25%), Positives = 38/78 (48%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTM 284
IF+ NL + + ++F FG +T+ ++ D K GF+ + A A++++
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 285 NGHVFKSKPLKVTLSGTK 302
NG+ K L+V+ K
Sbjct: 306 NGYRLGDKILQVSFKTNK 323
>UNIPROTKB|Q8N6W0 [details] [associations]
symbol:CELF5 "CUGBP Elav-like family member 5" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471139 HOVERGEN:HBG107646
KO:K13207 eggNOG:NOG251494 OrthoDB:EOG4RJG30 EMBL:AB209067
EMBL:AC005331 EMBL:AC006505 EMBL:AC010649 EMBL:AC123911
EMBL:BC028101 EMBL:AF329266 EMBL:AF248649 IPI:IPI00171157
IPI:IPI00853054 RefSeq:NP_001166144.1 RefSeq:NP_068757.2
UniGene:Hs.655747 PDB:2DNH PDBsum:2DNH ProteinModelPortal:Q8N6W0
SMR:Q8N6W0 STRING:Q8N6W0 PhosphoSite:Q8N6W0 DMDM:74762534
PRIDE:Q8N6W0 DNASU:60680 Ensembl:ENST00000292672
Ensembl:ENST00000541430 GeneID:60680 KEGG:hsa:60680 UCSC:uc002lxl.2
UCSC:uc010dtj.2 CTD:60680 GeneCards:GC19P003224 HGNC:HGNC:14058
HPA:HPA042012 MIM:612680 neXtProt:NX_Q8N6W0 PharmGKB:PA25429
InParanoid:Q8N6W0 OMA:DGMKDLD PhylomeDB:Q8N6W0
EvolutionaryTrace:Q8N6W0 GenomeRNAi:60680 NextBio:65500
ArrayExpress:Q8N6W0 Bgee:Q8N6W0 CleanEx:HS_BRUNOL5
Genevestigator:Q8N6W0 Uniprot:Q8N6W0
Length = 485
Score = 124 (48.7 bits), Expect = 4.4e-12, Sum P(2) = 4.4e-12
Identities = 42/158 (26%), Positives = 78/158 (49%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L V + +D + L F++FG + ++ V ++ +G A + + A KA+ +
Sbjct: 47 LFVGQIPRHLDEKDLKPLFEQFGRIYELTVLKDPYTGMHKGCAFLTYCARDSAIKAQTAL 106
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
H + P + +++KP S+ G ++ K+FV L + EE++ F FG
Sbjct: 107 --HEQKTLPGMARPIQVKPAD-SESRGGRDR-----KLFVGMLNKQQSEEDVLRLFQPFG 158
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNG 193
I E ++R +G SKG F++F S+ A+ AI ++G
Sbjct: 159 VIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHG 196
Score = 110 (43.8 bits), Expect = 4.4e-12, Sum P(2) = 4.4e-12
Identities = 29/81 (35%), Positives = 39/81 (48%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTM 284
+F+ +LP ++E ++F FG I SS + D K GF+ F P A A+ M
Sbjct: 402 LFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRATNQSKCFGFVSFDNPASAQAAIQAM 461
Query: 285 NGHVFKSKPLKVTLSGTK-PG 304
NG K LKV L K PG
Sbjct: 462 NGFQIGMKRLKVQLKRPKDPG 482
>ZFIN|ZDB-GENE-990415-246 [details] [associations]
symbol:elavl4 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 4 (Hu antigen D)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-246 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:CR931780 EMBL:CU467068
EMBL:CU929301 IPI:IPI00920316 ProteinModelPortal:F1R133
Ensembl:ENSDART00000134787 ArrayExpress:F1R133 Bgee:F1R133
Uniprot:F1R133
Length = 408
Score = 178 (67.7 bits), Expect = 3.3e-11, P = 3.3e-11
Identities = 50/164 (30%), Positives = 79/164 (48%)
Query: 130 KDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAI 188
K + V L + + +EE +S F G I K+VRD+ G+S G+GF+ + K AEKAI
Sbjct: 87 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 146
Query: 189 IEMNGRMIQHNSTFVSLAEIXXXXXXXXXXXXXLLQPARKNKIFVANLPSNINNSEFEEL 248
+NG +Q + VS A R ++V+ LP + E E+L
Sbjct: 147 NTLNGLRLQTKTIKVSYARPSSASI-------------RDANLYVSGLPKTMTQKELEQL 193
Query: 249 FARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNG 286
F+++G I +S ++ D + +GFI F A A+ +NG
Sbjct: 194 FSQYGRIITSRILVDQVTGGSRGVGFIRFDKRIEAEEAIKGLNG 237
Score = 150 (57.9 bits), Expect = 4.5e-12, Sum P(2) = 4.5e-12
Identities = 42/160 (26%), Positives = 81/160 (50%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L VN L ++ + + F G + ++ R+K +S G+ + + P +A+KA +
Sbjct: 90 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 149
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
NG + +K + +++ P + ++V L +T+ ++EL+ F ++G
Sbjct: 150 NGLRLQTKTIKVSYAR-----------PSSASIRDANLYVSGLPKTMTQKELEQLFSQYG 198
Query: 156 NIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEMNGR 194
II +I+ D+ G S+G GFI+F AE+AI +NG+
Sbjct: 199 RIITSRILVDQVTGGSRGVGFIRFDKRIEAEEAIKGLNGQ 238
Score = 123 (48.4 bits), Expect = 7.0e-05, P = 7.0e-05
Identities = 29/76 (38%), Positives = 40/76 (52%)
Query: 228 KNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDK------HIGFIEFIMPKHATHAV 281
K + V LP N+ EF LF G I S LV DK GF+ +I PK A A+
Sbjct: 87 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 146
Query: 282 STMNGHVFKSKPLKVT 297
+T+NG ++K +KV+
Sbjct: 147 NTLNGLRLQTKTIKVS 162
Score = 115 (45.5 bits), Expect = 0.00055, P = 0.00055
Identities = 27/62 (43%), Positives = 34/62 (54%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAIIEM 191
+FV NL DE L F FG + VK++RD N K KGFGF+ +Y A AI +
Sbjct: 327 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 386
Query: 192 NG 193
NG
Sbjct: 387 NG 388
Score = 78 (32.5 bits), Expect = 4.5e-12, Sum P(2) = 4.5e-12
Identities = 21/78 (26%), Positives = 37/78 (47%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTM 284
IFV NL + + S +LF FG + + ++ D K GF+ A A++++
Sbjct: 327 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 386
Query: 285 NGHVFKSKPLKVTLSGTK 302
NG+ + L+V+ K
Sbjct: 387 NGYRLGDRVLQVSFKTNK 404
>UNIPROTKB|F1PSC4 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:AAEX03012469
Ensembl:ENSCAFT00000029161 Uniprot:F1PSC4
Length = 334
Score = 178 (67.7 bits), Expect = 1.8e-11, P = 1.8e-11
Identities = 49/176 (27%), Positives = 89/176 (50%)
Query: 130 KDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAI 188
+ + V L + + ++EL+S F G + K++RD+ G S G+GF+ + + K AE+AI
Sbjct: 27 RTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAI 86
Query: 189 IEMNGRMIQHNSTFVSLAEIXXXXXXXXXXXXXLLQPARKNKIFVANLPSNINNSEFEEL 248
+NG +Q + VS A +++ A ++++ LP + + E++
Sbjct: 87 NTLNGLRLQSKTIKVSYAR----------PSSEVIKDAN---LYISGLPRTMTQKDVEDM 133
Query: 249 FARFGTITSSSLVSDKHIG------FIEFIMPKHATHAVSTMNGHV--FKSKPLKV 296
F+RFG I +S ++ D+ G FI F A A+++ NGH S+P+ V
Sbjct: 134 FSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITV 189
Score = 145 (56.1 bits), Expect = 4.8e-12, Sum P(2) = 4.8e-12
Identities = 40/159 (25%), Positives = 77/159 (48%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L VN L ++ L + F G + ++ R+K S G+ + + T +A++A +
Sbjct: 30 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 89
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
NG + SK + +++ P + K +++ L T+ +++++ F +FG
Sbjct: 90 NGLRLQSKTIKVSYAR-----------PSSEVIKDANLYISGLPRTMTQKDVEDMFSRFG 138
Query: 156 NIIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAIIEMNG 193
II +++ D+ G S+G FI+F AE+AI NG
Sbjct: 139 RIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 177
Score = 120 (47.3 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 26/62 (41%), Positives = 36/62 (58%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAIIEM 191
+F+ NL + DE L F FG + VK++RD N K KGFGF+ +Y+ A AI +
Sbjct: 254 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 313
Query: 192 NG 193
NG
Sbjct: 314 NG 315
Score = 115 (45.5 bits), Expect = 0.00039, P = 0.00039
Identities = 25/76 (32%), Positives = 41/76 (53%)
Query: 228 KNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDK---H---IGFIEFIMPKHATHAV 281
+ + V LP N+ E LF+ G + S+ L+ DK H GF+ ++ K A A+
Sbjct: 27 RTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAI 86
Query: 282 STMNGHVFKSKPLKVT 297
+T+NG +SK +KV+
Sbjct: 87 NTLNGLRLQSKTIKVS 102
Score = 84 (34.6 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 24/83 (28%), Positives = 44/83 (53%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDE-SRGFAIIVFNTPAEAKKARVEM 95
L+++ L ++ + + + F +FG + + RV ++ SRG A I F+ +EA++A
Sbjct: 116 LYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSF 175
Query: 96 NGHLI--GSKPVIITFVELKPGQ 116
NGH S+P+ + F P Q
Sbjct: 176 NGHKPPGSSEPITVKFAA-NPNQ 197
Score = 80 (33.2 bits), Expect = 4.8e-12, Sum P(2) = 4.8e-12
Identities = 20/78 (25%), Positives = 38/78 (48%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTM 284
IF+ NL + + ++F FG +T+ ++ D K GF+ + A A++++
Sbjct: 254 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 313
Query: 285 NGHVFKSKPLKVTLSGTK 302
NG+ K L+V+ K
Sbjct: 314 NGYRLGDKILQVSFKTNK 331
>POMBASE|SPAC140.02 [details] [associations]
symbol:gar2 "nucleolar protein required for rRNA
processing" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005732 "small nucleolar ribonucleoprotein complex"
evidence=ISS] [GO:0006364 "rRNA processing" evidence=IMP]
[GO:0007000 "nucleolus organization" evidence=IMP] [GO:0042254
"ribosome biogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPAC140.02 EMBL:CU329670 GO:GO:0005730
GenomeReviews:CU329670_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006364 eggNOG:COG0724 GO:GO:0007000
GO:GO:0005732 EMBL:Z48166 PIR:S55785 RefSeq:NP_593531.1
ProteinModelPortal:P41891 STRING:P41891 PRIDE:P41891
EnsemblFungi:SPAC140.02.1 GeneID:2542869 KEGG:spo:SPAC140.02
KO:K11294 OMA:VITDRES OrthoDB:EOG422DTZ NextBio:20803909
Uniprot:P41891
Length = 500
Score = 186 (70.5 bits), Expect = 5.9e-12, P = 5.9e-12
Identities = 58/193 (30%), Positives = 95/193 (49%)
Query: 14 EGISDDEGARSXXXXXXXXXXXXLHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KND 72
E S++ A+ + V L +VD+Q L EF+++GT+ RV + ++
Sbjct: 242 EPASEERPAKITKPSQDSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSG 301
Query: 73 ESRGFAIIVFNTPAEAKKARVEMNGHL-IGSKPVIITFVELKPG-------QRSKPVGPE 124
S+G+ + F TP EA KA V NG I + V + +P QR+ G +
Sbjct: 302 RSKGYGYVDFETP-EAAKAAVAANGTKEIDGRMVNLDLSNPRPANPQPYAQQRAGNFGDQ 360
Query: 125 EKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRD-ENGKSKGFGFIQFFSYKA 183
+ D VFV NL E++L + F G+I +++ D ++G+ KGFG++ F +
Sbjct: 361 LSE-PSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDS 419
Query: 184 AEKAIIEMNGRMI 196
A+K + EMNG I
Sbjct: 420 AKKCV-EMNGHFI 431
Score = 160 (61.4 bits), Expect = 6.3e-09, P = 6.3e-09
Identities = 53/208 (25%), Positives = 92/208 (44%)
Query: 113 KPGQRSKPVG---PEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRD-ENG 168
+P +P P + + VFV L VD++ L F ++G I+ +++ D ++G
Sbjct: 242 EPASEERPAKITKPSQDSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSG 301
Query: 169 KSKGFGFIQFFSYKAAEKAII-----EMNGRMIQHNSTFVSLAEIX-XXXXXXXXXXXXL 222
+SKG+G++ F + +AA+ A+ E++GRM+ + + A L
Sbjct: 302 RSKGYGYVDFETPEAAKAAVAANGTKEIDGRMVNLDLSNPRPANPQPYAQQRAGNFGDQL 361
Query: 223 LQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKH 276
+P+ + +FV NL N + F G I S L +D K G++ F
Sbjct: 362 SEPS--DTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDS 419
Query: 277 ATHAVSTMNGHVFKSKPLKVTLSGTKPG 304
A V MNGH +P ++ S + G
Sbjct: 420 AKKCVE-MNGHFIAGRPCRLDFSTPRTG 446
>TAIR|locus:2115169 [details] [associations]
symbol:AT4G36960 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 KO:K14411
HSSP:Q14103 UniGene:At.4642 UniGene:At.4643 EMBL:AY048286
EMBL:BT000573 IPI:IPI00527793 RefSeq:NP_001154290.1
RefSeq:NP_568011.1 ProteinModelPortal:Q94AC3 SMR:Q94AC3
IntAct:Q94AC3 PaxDb:Q94AC3 PRIDE:Q94AC3 EnsemblPlants:AT4G36960.1
EnsemblPlants:AT4G36960.2 GeneID:829850 KEGG:ath:AT4G36960
TAIR:At4g36960 HOGENOM:HOG000070627 InParanoid:Q94AC3 OMA:EITDLYM
PhylomeDB:Q94AC3 ProtClustDB:CLSN2689792 Genevestigator:Q94AC3
Uniprot:Q94AC3
Length = 379
Score = 158 (60.7 bits), Expect = 6.1e-12, Sum P(2) = 6.1e-12
Identities = 42/143 (29%), Positives = 74/143 (51%)
Query: 46 VDNQALINEFKKFGTLRDVRVARNKND-ESRGFAIIVFNTPAEAKKARVEMNG-HLIGSK 103
+D+ L + KFG L D V ++++ SRGF + F + +AK A + G H +G++
Sbjct: 14 IDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNA---LKGEHFLGNR 70
Query: 104 PVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIV 163
+E+K + + K K ++FV + +V E + +SHF ++G I ++ +
Sbjct: 71 -----ILEVKVATPKEEMRQPAK--KVTRIFVARIPSSVSESDFRSHFERYGEITDLYMP 123
Query: 164 RDENGKS-KGFGFIQFFSYKAAE 185
+D N K +G GFI F S + E
Sbjct: 124 KDYNSKQHRGIGFITFSSADSVE 146
Score = 153 (58.9 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 45/148 (30%), Positives = 77/148 (52%)
Query: 132 KVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAIIE 190
K+ V + +D + LK + KFG++ + +++D + G+S+GFG++ F S + A+ A+
Sbjct: 4 KLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNAL-- 61
Query: 191 MNGRMIQHNSTFVSLAEIXXXXXXXXXXXXXLLQPARK-NKIFVANLPSNINNSEFEELF 249
G N + E+ + QPA+K +IFVA +PS+++ S+F F
Sbjct: 62 -KGEHFLGNR----ILEVKVATPKEE-----MRQPAKKVTRIFVARIPSSVSESDFRSHF 111
Query: 250 ARFGTITSSSLVSD----KH--IGFIEF 271
R+G IT + D +H IGFI F
Sbjct: 112 ERYGEITDLYMPKDYNSKQHRGIGFITF 139
Score = 66 (28.3 bits), Expect = 6.1e-12, Sum P(2) = 6.1e-12
Identities = 16/44 (36%), Positives = 21/44 (47%)
Query: 229 NKIFVANLPSNINNSEFEELFARFGTITSSSLVSDK----HIGF 268
NKIFV LP + + + F RFG I + + D H GF
Sbjct: 240 NKIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGF 283
>UNIPROTKB|B4DVB8 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 UniGene:Hs.184492
UniGene:Hs.713744 HGNC:HGNC:3312 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AC010336 EMBL:AC008975 EMBL:AK301013
IPI:IPI00301936 ProteinModelPortal:B4DVB8 SMR:B4DVB8 IntAct:B4DVB8
STRING:B4DVB8 PRIDE:B4DVB8 Ensembl:ENST00000351593 OMA:RFGGPLH
ArrayExpress:B4DVB8 Bgee:B4DVB8 Uniprot:B4DVB8
Length = 353
Score = 178 (67.7 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 49/176 (27%), Positives = 89/176 (50%)
Query: 130 KDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAI 188
+ + V L + + ++EL+S F G + K++RD+ G S G+GF+ + + K AE+AI
Sbjct: 46 RTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAI 105
Query: 189 IEMNGRMIQHNSTFVSLAEIXXXXXXXXXXXXXLLQPARKNKIFVANLPSNINNSEFEEL 248
+NG +Q + VS A +++ A ++++ LP + + E++
Sbjct: 106 NTLNGLRLQSKTIKVSYAR----------PSSEVIKDAN---LYISGLPRTMTQKDVEDM 152
Query: 249 FARFGTITSSSLVSDKHIG------FIEFIMPKHATHAVSTMNGHV--FKSKPLKV 296
F+RFG I +S ++ D+ G FI F A A+++ NGH S+P+ V
Sbjct: 153 FSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITV 208
Score = 145 (56.1 bits), Expect = 6.2e-12, Sum P(2) = 6.2e-12
Identities = 40/159 (25%), Positives = 77/159 (48%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L VN L ++ L + F G + ++ R+K S G+ + + T +A++A +
Sbjct: 49 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 108
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
NG + SK + +++ P + K +++ L T+ +++++ F +FG
Sbjct: 109 NGLRLQSKTIKVSYAR-----------PSSEVIKDANLYISGLPRTMTQKDVEDMFSRFG 157
Query: 156 NIIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAIIEMNG 193
II +++ D+ G S+G FI+F AE+AI NG
Sbjct: 158 RIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 196
Score = 120 (47.3 bits), Expect = 2.3e-09, Sum P(2) = 2.3e-09
Identities = 26/62 (41%), Positives = 36/62 (58%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAIIEM 191
+F+ NL + DE L F FG + VK++RD N K KGFGF+ +Y+ A AI +
Sbjct: 273 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 332
Query: 192 NG 193
NG
Sbjct: 333 NG 334
Score = 115 (45.5 bits), Expect = 0.00043, P = 0.00043
Identities = 25/76 (32%), Positives = 41/76 (53%)
Query: 228 KNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDK---H---IGFIEFIMPKHATHAV 281
+ + V LP N+ E LF+ G + S+ L+ DK H GF+ ++ K A A+
Sbjct: 46 RTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAI 105
Query: 282 STMNGHVFKSKPLKVT 297
+T+NG +SK +KV+
Sbjct: 106 NTLNGLRLQSKTIKVS 121
Score = 84 (34.6 bits), Expect = 2.3e-09, Sum P(2) = 2.3e-09
Identities = 24/83 (28%), Positives = 44/83 (53%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDE-SRGFAIIVFNTPAEAKKARVEM 95
L+++ L ++ + + + F +FG + + RV ++ SRG A I F+ +EA++A
Sbjct: 135 LYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSF 194
Query: 96 NGHLI--GSKPVIITFVELKPGQ 116
NGH S+P+ + F P Q
Sbjct: 195 NGHKPPGSSEPITVKFAA-NPNQ 216
Score = 80 (33.2 bits), Expect = 6.2e-12, Sum P(2) = 6.2e-12
Identities = 20/78 (25%), Positives = 38/78 (48%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTM 284
IF+ NL + + ++F FG +T+ ++ D K GF+ + A A++++
Sbjct: 273 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 332
Query: 285 NGHVFKSKPLKVTLSGTK 302
NG+ K L+V+ K
Sbjct: 333 NGYRLGDKILQVSFKTNK 350
>ZFIN|ZDB-GENE-031125-3 [details] [associations]
symbol:rbm19 "RNA binding motif protein 19"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0048546 "digestive
tract morphogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-031125-3 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0048546 HOGENOM:HOG000211156 HOVERGEN:HBG055637
EMBL:AY648773 IPI:IPI00654470 UniGene:Dr.79791
ProteinModelPortal:Q6DRI6 SMR:Q6DRI6 STRING:Q6DRI6 PRIDE:Q6DRI6
InParanoid:Q6DRI6 Bgee:Q6DRI6 Uniprot:Q6DRI6
Length = 927
Score = 153 (58.9 bits), Expect = 7.2e-12, Sum P(2) = 7.2e-12
Identities = 53/180 (29%), Positives = 84/180 (46%)
Query: 124 EEKQYKKDKV------FVKNLVETVDEEELKSHFIKFGNIIEVKIV--RDENGK--SKGF 173
EE++ + D++ F+KNL EE L+ F K G + I RD+ GK S G+
Sbjct: 689 EEEEEEDDQILPGSTLFIKNLNFITSEETLQKTFSKCGVVKSCTISKKRDKAGKLLSMGY 748
Query: 174 GFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXXXXXXXXLLQPARK---NK 230
GF+Q+ + +AA+KA+ ++ + + V ++E Q ARK +K
Sbjct: 749 GFVQYKTPEAAQKAMRQLQHCTVDEHQLEVKISEREVKSGVAQAKRKK--QTARKQTTSK 806
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSL----VSDKH--IGFIEFIMPKHATHAVSTM 284
I V N+P E ELF FG + + L + H GFI+F+ + A A S +
Sbjct: 807 ILVRNIPFQATVKELRELFCTFGELKTVRLPKKGIGGSHRGFGFIDFLTKQDAKKAFSAL 866
Score = 132 (51.5 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 40/159 (25%), Positives = 75/159 (47%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDE----SRGFAIIVFNTPAEAKKAR 92
L + NL + L F K G ++ +++ ++ S G+ + + TP A+KA
Sbjct: 704 LFIKNLNFITSEETLQKTFSKCGVVKSCTISKKRDKAGKLLSMGYGFVQYKTPEAAQKAM 763
Query: 93 VEMNGHLIGSKP--VIITFVELKPG-QRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKS 149
++ + V I+ E+K G ++K ++ K+ V+N+ +EL+
Sbjct: 764 RQLQHCTVDEHQLEVKISEREVKSGVAQAKRKKQTARKQTTSKILVRNIPFQATVKELRE 823
Query: 150 HFIKFGNIIEVKIVRDENGKS-KGFGFIQFFSYKAAEKA 187
F FG + V++ + G S +GFGFI F + + A+KA
Sbjct: 824 LFCTFGELKTVRLPKKGIGGSHRGFGFIDFLTKQDAKKA 862
Score = 112 (44.5 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 37/150 (24%), Positives = 69/150 (46%)
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPV-IITFVELKPGQRSKPVG 122
+R A+N + + G+ + + AE ++A + ++ +G + + + K +RS
Sbjct: 318 IRFAKNSDGRNSGYVYVDLRSEAEVERA-LRLDKDYMGGRYIEVFRANNFKNDRRSAKRS 376
Query: 123 PEEKQY----KKD----------KVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-N 167
EK + K D ++F++N+ T EE+LK F K G + EV D
Sbjct: 377 EMEKNFVRELKDDEEEEDVAESGRLFIRNMPYTCTEEDLKELFSKHGPLSEVLFPIDSLT 436
Query: 168 GKSKGFGFIQFFSYKAAEKAIIEMNGRMIQ 197
K KGF F+ + + A A+ +++G Q
Sbjct: 437 KKPKGFAFVTYMIPENAVSALAQLDGHTFQ 466
Score = 110 (43.8 bits), Expect = 5.2e-08, Sum P(2) = 5.2e-08
Identities = 26/100 (26%), Positives = 50/100 (50%)
Query: 226 ARKNKIFVANLPSNINNSEFEELFARFGTITS-----SSLVSD-KHIGFIEFIMPKHATH 279
A ++F+ N+P + +ELF++ G ++ SL K F+ +++P++A
Sbjct: 396 AESGRLFIRNMPYTCTEEDLKELFSKHGPLSEVLFPIDSLTKKPKGFAFVTYMIPENAVS 455
Query: 280 AVSTMNGHVFKSKPLKVTLSGTKPGVSITNPTKAPKKPAY 319
A++ ++GH F+ + L V S K + P AP +Y
Sbjct: 456 ALAQLDGHTFQGRVLHVMASRLKKEKADQGPD-APGSSSY 494
Score = 93 (37.8 bits), Expect = 5.2e-08, Sum P(2) = 5.2e-08
Identities = 20/74 (27%), Positives = 38/74 (51%)
Query: 132 KVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEM 191
++ VKNL + E+ + F FG + + + ++GK + FGF+ F + + A+KA+
Sbjct: 3 RLIVKNLPNGMKEDRFRKMFADFGTLTDCALKFTKDGKFRKFGFVGFKTEEDAQKALKHF 62
Query: 192 NGRMIQHNSTFVSL 205
N + + V L
Sbjct: 63 NKSFVDTSRVTVEL 76
Score = 83 (34.3 bits), Expect = 7.2e-12, Sum P(2) = 7.2e-12
Identities = 23/98 (23%), Positives = 42/98 (42%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L + N+ + + L F K G L +V + + +GFA + + P A A ++
Sbjct: 401 LFIRNMPYTCTEEDLKELFSKHGPLSEVLFPIDSLTKKPKGFAFVTYMIPENAVSALAQL 460
Query: 96 NGHLIGSKPVIITFVELKPGQRSK-PVGPEEKQYKKDK 132
+GH + + + LK + + P P YK+ K
Sbjct: 461 DGHTFQGRVLHVMASRLKKEKADQGPDAPGSSSYKRKK 498
Score = 80 (33.2 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 33/134 (24%), Positives = 56/134 (41%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L V NL + F FGTL D + K+ + R F + F T +A+KA N
Sbjct: 4 LIVKNLPNGMKEDRFRKMFADFGTLTDCALKFTKDGKFRKFGFVGFKTEEDAQKALKHFN 63
Query: 97 GHLIGSKPVIITF-VELKPGQRSKPVGPEEKQ--YKKDKVFVKNLVETVDEEELKSHFIK 153
+ + V + + +++P +Q KKD K E ++E+ K K
Sbjct: 64 KSFVDTSRVTVELCTDFGDPNKARPWSKHTRQPSSKKDTE-EKKTHEQGEKEKKKPK--K 120
Query: 154 FGNIIEVKIVRDEN 167
N++ + +DE+
Sbjct: 121 ILNVLG-DLEKDES 133
Score = 77 (32.2 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 26/99 (26%), Positives = 39/99 (39%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSDKHIGFIEFIMPKHATHAVSTMNGHVFK 290
I V NLPS + ++ E LF+ G++ L +EF+ P A A + F+
Sbjct: 587 ILVKNLPSGVQVADLEALFSPHGSLGRVLLPPSGLTAIVEFLEPTEAKRAFMKLAYTKFQ 646
Query: 291 SKPLKVTLSG----TKPGVSITNPTKAPKKPAYIDEVKN 325
PL + + T P P K D V+N
Sbjct: 647 HVPLYLEWAPVAVFTTPSAPRPEPQTKEKSAVKNDSVQN 685
>ZFIN|ZDB-GENE-980526-76 [details] [associations]
symbol:elavl3 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 3 (Hu antigen C)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-980526-76 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP OrthoDB:EOG43R3N0
EMBL:CR385086 EMBL:BC065343 IPI:IPI00512421 UniGene:Dr.75060
SMR:Q6P105 STRING:Q6P105 Ensembl:ENSDART00000028610
InParanoid:Q6P105 Uniprot:Q6P105
Length = 359
Score = 172 (65.6 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 51/173 (29%), Positives = 82/173 (47%)
Query: 130 KDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAI 188
K + V L + + +EE KS F G I K+VRD+ G+S G+GF+ + A+KAI
Sbjct: 37 KTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAI 96
Query: 189 IEMNGRMIQHNSTFVSLAEIXXXXXXXXXXXXXLLQPARKNKIFVANLPSNINNSEFEEL 248
+NG +Q + VS A R ++V+ LP ++ + E+L
Sbjct: 97 NTLNGLKLQTKTIKVSYARPSSASI-------------RDANLYVSGLPKTMSQKDMEQL 143
Query: 249 FARFGTITSSSLVSD-------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPL 294
F+++G I +S ++ D + +GFI F A A+ +NG KPL
Sbjct: 144 FSQYGRIITSRILVDQVTAGISRGVGFIRFDKRNEAEEAIKGLNGQ----KPL 192
Score = 141 (54.7 bits), Expect = 7.7e-12, Sum P(2) = 7.7e-12
Identities = 40/161 (24%), Positives = 80/161 (49%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L VN L ++ + + F G + ++ R+K +S G+ + + P +A KA +
Sbjct: 40 LIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINTL 99
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
NG + +K + +++ P + ++V L +T+ +++++ F ++G
Sbjct: 100 NGLKLQTKTIKVSYAR-----------PSSASIRDANLYVSGLPKTMSQKDMEQLFSQYG 148
Query: 156 NIIEVKIVRDE--NGKSKGFGFIQFFSYKAAEKAIIEMNGR 194
II +I+ D+ G S+G GFI+F AE+AI +NG+
Sbjct: 149 RIITSRILVDQVTAGISRGVGFIRFDKRNEAEEAIKGLNGQ 189
Score = 119 (46.9 bits), Expect = 0.00016, P = 0.00016
Identities = 27/76 (35%), Positives = 40/76 (52%)
Query: 228 KNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDK------HIGFIEFIMPKHATHAV 281
K + V LP N+ EF+ LF G I S LV DK GF+ ++ P A A+
Sbjct: 37 KTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAI 96
Query: 282 STMNGHVFKSKPLKVT 297
+T+NG ++K +KV+
Sbjct: 97 NTLNGLKLQTKTIKVS 112
Score = 115 (45.5 bits), Expect = 0.00044, P = 0.00044
Identities = 26/62 (41%), Positives = 33/62 (53%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRD-ENGKSKGFGFIQFFSYKAAEKAIIEM 191
+FV NL DE L F FG + VK++RD K KGFGF+ +Y A AI +
Sbjct: 278 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 192 NG 193
NG
Sbjct: 338 NG 339
Score = 84 (34.6 bits), Expect = 7.7e-12, Sum P(2) = 7.7e-12
Identities = 22/78 (28%), Positives = 38/78 (48%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTM 284
IFV NL + S +LF FG +T+ ++ D K GF+ A A++++
Sbjct: 278 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 285 NGHVFKSKPLKVTLSGTK 302
NG+ + L+V+ +K
Sbjct: 338 NGYRLGDRVLQVSFKTSK 355
>FB|FBgn0000114 [details] [associations]
symbol:aret "arrest" species:7227 "Drosophila melanogaster"
[GO:0048477 "oogenesis" evidence=IMP] [GO:0007286 "spermatid
development" evidence=IMP] [GO:0007319 "negative regulation of
oskar mRNA translation" evidence=IDA;NAS;TAS] [GO:0003729 "mRNA
binding" evidence=ISS;NAS;TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0030727 "germarium-derived female germ-line cyst
formation" evidence=TAS] [GO:0042078 "germ-line stem cell division"
evidence=NAS] [GO:0046011 "regulation of oskar mRNA translation"
evidence=TAS] [GO:0006378 "mRNA polyadenylation" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA;TAS] [GO:0017148
"negative regulation of translation" evidence=IMP] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0043186 "P granule"
evidence=IDA] [GO:0005634 "nucleus" evidence=IC] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IMP] [GO:0003723 "RNA binding" evidence=IDA] [GO:0007281
"germ cell development" evidence=IMP] [GO:0031536 "positive
regulation of exit from mitosis" evidence=IMP] [GO:0002121
"inter-male aggressive behavior" evidence=IMP] [GO:0007476
"imaginal disc-derived wing morphogenesis" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 EMBL:AE014134 GO:GO:0007286
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0003730
GO:GO:0002121 HSSP:P19339 GO:GO:0007476 GO:GO:0030727 GO:GO:0007319
GO:GO:0031536 GO:GO:0042078 GeneTree:ENSGT00560000076837
GO:GO:0000381 GO:GO:0043186 FlyBase:FBgn0000114 UniGene:Dm.4487
GeneID:34648 KEGG:dme:Dmel_CG31762 CTD:34648 KO:K02177
GenomeRNAi:34648 NextBio:789496 EMBL:BT133212 RefSeq:NP_723737.1
SMR:Q8IP90 MINT:MINT-1597685 STRING:Q8IP90
EnsemblMetazoa:FBtr0080344 EnsemblMetazoa:FBtr0331645
UCSC:CG31762-RB InParanoid:Q8IP90 OMA:ASAYMST Uniprot:Q8IP90
Length = 810
Score = 138 (53.6 bits), Expect = 7.8e-12, Sum P(2) = 7.8e-12
Identities = 44/167 (26%), Positives = 82/167 (49%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
+ V + S+D L F+++G + + V R+K S+G + F T A KA+ +
Sbjct: 359 MFVGQVPKSMDESQLREMFEEYGAVHSINVLRDKATGISKGCCFVTFYTRHAALKAQDAL 418
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
H + + + +++KP E + ++ K+FV L + ++E +++ F G
Sbjct: 419 --HNVKTLNGMYHPIQMKPAD-------SENRNER-KLFVGMLNKKLNENDVRKLFEVHG 468
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAI-IEMNGRMIQHNST 201
I E ++RD+NG+SKG F+ F + AA AI + ++ I T
Sbjct: 469 AIEECTVLRDQNGQSKGCAFVTFATKHAAISAIKVTLSQNKIMEGCT 515
Score = 98 (39.6 bits), Expect = 7.8e-12, Sum P(2) = 7.8e-12
Identities = 28/104 (26%), Positives = 42/104 (40%)
Query: 205 LAEIXXXXXXXXXXXXXLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDK 264
LA + + P N +F+ +LP +++ F FG + S+ + DK
Sbjct: 703 LASVALSAAAAAAAGKQIEGPEGCN-LFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDK 761
Query: 265 H------IGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTK 302
GF+ F P A A+ MNG +K LKV L K
Sbjct: 762 QTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLKKPK 805
>UNIPROTKB|E2RRF5 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OMA:VFREKNV
GeneTree:ENSGT00700000104575 EMBL:AAEX03014696
Ensembl:ENSCAFT00000014561 Uniprot:E2RRF5
Length = 968
Score = 167 (63.8 bits), Expect = 2.7e-09, P = 2.7e-09
Identities = 41/159 (25%), Positives = 76/159 (47%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDE----SRGFAIIVFNTPAEAKKAR 92
L + NL S + L F K G ++ +++ KN S GF + + P +A+KA
Sbjct: 732 LFIKNLNFSTTEETLKGVFSKAGMVKSCSISKKKNKAGELLSMGFGFVEYRKPEQAQKAL 791
Query: 93 VEMNGHLIGSKPVIITFVE--LKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
++ GH++ S + + E KP S ++ K+ V+N+ D+ E++
Sbjct: 792 KQLQGHVVDSHKLEVRISERATKPALTSTRKKQVPRKQTTSKILVRNIPFQADKREIQEL 851
Query: 151 FIKFGNIIEVKIVRDENGKS--KGFGFIQFFSYKAAEKA 187
F FG + V++ + G +GFGF+ F + + A++A
Sbjct: 852 FSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRA 890
Score = 162 (62.1 bits), Expect = 7.6e-09, Sum P(2) = 7.6e-09
Identities = 55/214 (25%), Positives = 95/214 (44%)
Query: 85 PAEAKKARVEM-NGHLIGSKPVIITFVEL--KPGQRSKPVGPEEKQYKKDKVFVKNLVET 141
PAE +A E N G KP + K + + EE+ +F+KNL +
Sbjct: 681 PAEEDRAEPETYNETPEGEKPAEGRAEDCPAKVEEEEEEEEEEEESLPGCTLFIKNLNFS 740
Query: 142 VDEEELKSHFIKFGNIIEVKIVRDEN--GK--SKGFGFIQFFSYKAAEKAIIEMNGRMIQ 197
EE LK F K G + I + +N G+ S GFGF+++ + A+KA+ ++ G ++
Sbjct: 741 TTEETLKGVFSKAGMVKSCSISKKKNKAGELLSMGFGFVEYRKPEQAQKALKQLQGHVVD 800
Query: 198 HNSTFVSLAEIXXXXXXXXXXXXXLLQPARKNKIFVANLPSNINNSEFEELFARFGTITS 257
+ V ++E + + +KI V N+P + E +ELF+ FG + +
Sbjct: 801 SHKLEVRISERATKPALTSTRKKQVPRKQTTSKILVRNIPFQADKREIQELFSTFGELKT 860
Query: 258 SSLV-----SDKH--IGFIEFIMPKHATHAVSTM 284
L + H GF++F+ + A A +
Sbjct: 861 VRLPKKMTGTGTHRGFGFVDFLTKQDAKRAFQAL 894
Score = 131 (51.2 bits), Expect = 9.0e-12, Sum P(2) = 9.0e-12
Identities = 45/148 (30%), Positives = 72/148 (48%)
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKA----RVEMNGHLIG---SKPVIITFVELKPGQ 116
+R+ RN + G+ + F + E K+A R M G I K V T LK
Sbjct: 325 IRIVRNAHGNKTGYIFVDFRSEEEIKQALKCNREYMGGRYIEIFREKNVPTTKGPLKNSA 384
Query: 117 R---SKPVGP-EEKQYKKD--KVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGK 169
+ + +G EE++ D ++F++NL T EE+L+ F KFG + E+ D K
Sbjct: 385 KPWQGRTLGENEEEEDLADSGRLFIRNLPYTSTEEDLQRLFSKFGPLSELHYPIDSLTKK 444
Query: 170 SKGFGFIQFFSYKAAEKAIIEMNGRMIQ 197
KGF F+ F + A +A E++G++ Q
Sbjct: 445 PKGFAFVTFIFPEHAVRAYAEVDGQVFQ 472
Score = 122 (48.0 bits), Expect = 0.00030, P = 0.00030
Identities = 68/285 (23%), Positives = 111/285 (38%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L + NL + + L F KFG L ++ + + +GFA + F P A +A E+
Sbjct: 407 LFIRNLPYTSTEEDLQRLFSKFGPLSELHYPIDSLTKKPKGFAFVTFIFPEHAVRAYAEV 466
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
+G + + + + +K + S+ + YKK K K+ + + F+
Sbjct: 467 DGQVFQGRMLHVLPSTIKK-EASEDTDTQGSSYKKKKES-KDKANSSSSHNWNTLFMG-P 523
Query: 156 NIIEVKIVRDENG-KSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXX 214
N + I + N KS+ F S A A+ E +++Q F+ +
Sbjct: 524 NAVADAIAQKYNATKSQVFDHETKGSV-AVRVALGET--QLVQEVRRFLLDNGVSLDSFS 580
Query: 215 XXXXXXXLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKHIGFIEFIMP 274
K I V NLP+ +E +E F RFG++ L +EF+ P
Sbjct: 581 QAAAERS------KTVILVKNLPAGTLVAELQETFGRFGSLGRVLLPEGGITAIVEFLEP 634
Query: 275 KHATHAVSTMNGHVFKSKPLKVTLSGTKPGV-SITNP-TKAPKKP 317
A A + F PL L GV S + P TK P+ P
Sbjct: 635 LEARKAFRHLAYSKFHHTPLY--LEWAPVGVFSSSAPQTKEPQDP 677
Score = 113 (44.8 bits), Expect = 8.7e-08, Sum P(2) = 8.7e-08
Identities = 28/93 (30%), Positives = 45/93 (48%)
Query: 226 ARKNKIFVANLPSNINNSEFEELFARFGTITS-----SSLVSD-KHIGFIEFIMPKHATH 279
A ++F+ NLP + + LF++FG ++ SL K F+ FI P+HA
Sbjct: 402 ADSGRLFIRNLPYTSTEEDLQRLFSKFGPLSELHYPIDSLTKKPKGFAFVTFIFPEHAVR 461
Query: 280 AVSTMNGHVFKSKPLKVTLSGTKPGVSITNPTK 312
A + ++G VF+ + L V S K S T+
Sbjct: 462 AYAEVDGQVFQGRMLHVLPSTIKKEASEDTDTQ 494
Score = 107 (42.7 bits), Expect = 9.0e-12, Sum P(2) = 9.0e-12
Identities = 27/97 (27%), Positives = 48/97 (49%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSDKH---------IGFIEFIMPKHATHAV 281
+F+ NL + + +F++ G + S S+ K+ GF+E+ P+ A A+
Sbjct: 732 LFIKNLNFSTTEETLKGVFSKAGMVKSCSISKKKNKAGELLSMGFGFVEYRKPEQAQKAL 791
Query: 282 STMNGHVFKSKPLKVTLS--GTKPGVSITNPTKAPKK 316
+ GHV S L+V +S TKP ++ T + P+K
Sbjct: 792 KQLQGHVVDSHKLEVRISERATKPALTSTRKKQVPRK 828
Score = 88 (36.0 bits), Expect = 8.7e-08, Sum P(2) = 8.7e-08
Identities = 22/77 (28%), Positives = 40/77 (51%)
Query: 132 KVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEM 191
++ VKNL + E+ + F FG + + + ++GK + FGFI F K+ E+A+ +
Sbjct: 3 RLIVKNLPNGMKEDRFRQLFASFGTLTDCSLKFTKDGKFRKFGFIGF---KSEEEALSAL 59
Query: 192 NGRMIQHNSTFVSLAEI 208
N N +F+ + I
Sbjct: 60 N----HFNRSFIDTSRI 72
Score = 79 (32.9 bits), Expect = 3.4e-06, Sum P(2) = 3.4e-06
Identities = 31/106 (29%), Positives = 41/106 (38%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L V NL + F FGTL D + K+ + R F I F + EA A N
Sbjct: 4 LIVKNLPNGMKEDRFRQLFASFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEALSALNHFN 63
Query: 97 GHLIGSKPVIITFVE-----LKPGQRSKPVGP--EEKQYKKDKVFV 135
I + + + F + KP SK + K KDK FV
Sbjct: 64 RSFIDTSRITVEFCKSFGDPTKPRAWSKHAQKTKQSKNPSKDKDFV 109
Score = 44 (20.5 bits), Expect = 7.6e-09, Sum P(2) = 7.6e-09
Identities = 23/79 (29%), Positives = 30/79 (37%)
Query: 13 DEGISDDEGARSXXXXXXXXXXXXLHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKND 72
D G+S D S + V NL L F +FG+L V +
Sbjct: 571 DNGVSLD----SFSQAAAERSKTVILVKNLPAGTLVAELQETFGRFGSLGRVLLP----- 621
Query: 73 ESRGFAIIVFNTPAEAKKA 91
E AI+ F P EA+KA
Sbjct: 622 EGGITAIVEFLEPLEARKA 640
>UNIPROTKB|F1SMV6 [details] [associations]
symbol:LOC100737174 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:CU856676
Ensembl:ENSSSCT00000017723 Uniprot:F1SMV6
Length = 365
Score = 181 (68.8 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 71/258 (27%), Positives = 117/258 (45%)
Query: 53 NEFKK-FGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVE 111
+E K+ F ++R+ +K+ +S+G A I F T A+A+K E G I + + + +
Sbjct: 61 DELKEVFEDAVEIRLV-SKDGKSKGIAYIEFKTEADAEKTLEEKQGTEIDGRSISLYYTG 119
Query: 112 LKPGQRSKPVGPEEKQYK-KDKVFV-KNLVETVDEEELKSHFIKFGNIIEVKIVRDENGK 169
K GQ G + + + K V NL + EE L+ F K +K+ +++NGK
Sbjct: 120 EK-GQNQDFRGGKNSTWSGESKTLVLSNLAYSATEETLQEVFEK---ATFIKVPQNQNGK 175
Query: 170 SKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXXXXXXXXLLQPARKN 229
SKG+ FI+F S++ A++A+ N R I+ + + L QP++
Sbjct: 176 SKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARS-------QPSKT- 227
Query: 230 KIFVANLPSNINNSEFEELF---ARFGTITSSSLVSDKHIGFIEFIMPKHATHAVSTM-N 285
+FV L +E F R +T S K GF++F + A A M +
Sbjct: 228 -LFVKGLSEETTEETLKESFDGSIRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMED 286
Query: 286 GHVFKSKPLKVTLSGTKP 303
G + +K VTL KP
Sbjct: 287 GEIDGNK---VTLDWAKP 301
Score = 138 (53.6 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 54/213 (25%), Positives = 92/213 (43%)
Query: 115 GQRSKPVGPEEKQYKKDK----VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKS 170
G K P+ K KKD+ + KNL V ++ELK F + +E+++V ++GKS
Sbjct: 27 GNEIKLEKPKGKDSKKDRDARTLLAKNLPYKVTQDELKE---VFEDAVEIRLV-SKDGKS 82
Query: 171 KGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXXXXXXXXLLQPARKNK 230
KG +I+F + AEK + E G I S +SL + ++K
Sbjct: 83 KGIAYIEFKTEADAEKTLEEKQGTEIDGRS--ISLYYTGEKGQNQDFRGGKNSTWSGESK 140
Query: 231 IFV-ANLPSNINNSEFEELF--ARFGTITSSSLVSDKHIGFIEFIMPKHATHAVSTMNGH 287
V +NL + +E+F A F + + K FIEF + A A+++ N
Sbjct: 141 TLVLSNLAYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKR 200
Query: 288 VFKSKPLKVTLSGTKPGVSITNPTKAPKKPAYI 320
+ + +++ L G + N P K ++
Sbjct: 201 EIEGRAIRLELQGPRGS---PNARSQPSKTLFV 230
>TAIR|locus:2028205 [details] [associations]
symbol:AT1G45100 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 IPI:IPI00546918 RefSeq:NP_175125.1 UniGene:At.52038
ProteinModelPortal:F4HPM6 SMR:F4HPM6 PRIDE:F4HPM6
EnsemblPlants:AT1G45100.1 GeneID:841077 KEGG:ath:AT1G45100
OMA:SAYGANK ArrayExpress:F4HPM6 Uniprot:F4HPM6
Length = 497
Score = 156 (60.0 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 45/161 (27%), Positives = 79/161 (49%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH 98
V+NL P + F + VR+ N + G+ + F + A KA E NG
Sbjct: 162 VSNLSPLTKIAHIKGFFNGVAQVVSVRLVVNHEGKHVGYGFVEFASAYGANKALEEKNGE 221
Query: 99 LIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNII 158
+ + +++ +K G S P EE K +FV NL +++ ++ + F G ++
Sbjct: 222 YLHNHKILL----MK-GHES-PGFAEEAAITKT-LFVANLRDSIQISDIINFFKDVGEVV 274
Query: 159 EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHN 199
V+++ + GK G+GF++F S AEKA+++ NG + HN
Sbjct: 275 HVRLIVNSQGKHAGWGFVEFASANEAEKALVK-NGEYL-HN 313
Score = 88 (36.0 bits), Expect = 0.00072, Sum P(2) = 0.00072
Identities = 32/131 (24%), Positives = 57/131 (43%)
Query: 20 EGARSXXXXXXXXXXXXLHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAI 79
+G S L V NL S+ +IN FK G + VR+ N + G+
Sbjct: 232 KGHESPGFAEEAAITKTLFVANLRDSIQISDIINFFKDVGEVVHVRLIVNSQGKHAGWGF 291
Query: 80 IVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQY----KKDKVFV 135
+ F + EA+KA V+ NG + + + + + P + K + Y +++ + +
Sbjct: 292 VEFASANEAEKALVK-NGEYLHNYKISLDGAKTAPHRPPKFCLDHKVWYEDYLRRESLLI 350
Query: 136 KNL--VETVDE 144
K + VE +DE
Sbjct: 351 KEVEGVEGLDE 361
Score = 70 (29.7 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 23/71 (32%), Positives = 31/71 (43%)
Query: 226 ARKNKIFVANLPSNINN--SEFEELFARFGTITSSSLVSDKHIG------FIEFIMPKHA 277
ARKN +FVANLP N F+ G I ++ D H+G F+EF A
Sbjct: 371 ARKNTVFVANLPYNCRLIVPTIINFFSDVGEIVHIRIIVD-HMGEPVGCGFVEFNSSNEA 429
Query: 278 THAVSTMNGHV 288
A+ G +
Sbjct: 430 EKALQKKTGKI 440
>UNIPROTKB|F1N9I5 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727 GO:GO:0070935
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:AADN02063542 IPI:IPI00590347 ProteinModelPortal:F1N9I5
Ensembl:ENSGALT00000001029 Uniprot:F1N9I5
Length = 326
Score = 178 (67.7 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 49/176 (27%), Positives = 89/176 (50%)
Query: 130 KDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAI 188
+ + V L + + ++EL+S F G + K++RD+ G S G+GF+ + + K AE+AI
Sbjct: 19 RTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAI 78
Query: 189 IEMNGRMIQHNSTFVSLAEIXXXXXXXXXXXXXLLQPARKNKIFVANLPSNINNSEFEEL 248
+NG +Q + VS A +++ A ++++ LP ++ + E++
Sbjct: 79 NTLNGLRLQSKTIKVSYAR----------PSSEVIKDAN---LYISGLPRSMTQKDVEDM 125
Query: 249 FARFGTITSSSLVSDKHIG------FIEFIMPKHATHAVSTMNGHV--FKSKPLKV 296
F+RFG I +S ++ D+ G FI F A A++ NGH S+P+ V
Sbjct: 126 FSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITNFNGHKPPGSSEPITV 181
Score = 141 (54.7 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
Identities = 39/159 (24%), Positives = 77/159 (48%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L VN L ++ L + F G + ++ R+K S G+ + + T +A++A +
Sbjct: 22 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 81
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
NG + SK + +++ P + K +++ L ++ +++++ F +FG
Sbjct: 82 NGLRLQSKTIKVSYAR-----------PSSEVIKDANLYISGLPRSMTQKDVEDMFSRFG 130
Query: 156 NIIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAIIEMNG 193
II +++ D+ G S+G FI+F AE+AI NG
Sbjct: 131 RIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITNFNG 169
Score = 120 (47.3 bits), Expect = 8.2e-10, Sum P(2) = 8.2e-10
Identities = 26/62 (41%), Positives = 36/62 (58%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAIIEM 191
+F+ NL + DE L F FG + VK++RD N K KGFGF+ +Y+ A AI +
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 192 NG 193
NG
Sbjct: 306 NG 307
Score = 115 (45.5 bits), Expect = 0.00037, P = 0.00037
Identities = 25/76 (32%), Positives = 41/76 (53%)
Query: 228 KNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDK---H---IGFIEFIMPKHATHAV 281
+ + V LP N+ E LF+ G + S+ L+ DK H GF+ ++ K A A+
Sbjct: 19 RTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAI 78
Query: 282 STMNGHVFKSKPLKVT 297
+T+NG +SK +KV+
Sbjct: 79 NTLNGLRLQSKTIKVS 94
Score = 87 (35.7 bits), Expect = 8.2e-10, Sum P(2) = 8.2e-10
Identities = 25/83 (30%), Positives = 44/83 (53%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDE-SRGFAIIVFNTPAEAKKARVEM 95
L+++ L S+ + + + F +FG + + RV ++ SRG A I F+ +EA++A
Sbjct: 108 LYISGLPRSMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITNF 167
Query: 96 NGHLI--GSKPVIITFVELKPGQ 116
NGH S+P+ + F P Q
Sbjct: 168 NGHKPPGSSEPITVKFAA-NPNQ 189
Score = 80 (33.2 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
Identities = 20/78 (25%), Positives = 38/78 (48%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTM 284
IF+ NL + + ++F FG +T+ ++ D K GF+ + A A++++
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 285 NGHVFKSKPLKVTLSGTK 302
NG+ K L+V+ K
Sbjct: 306 NGYRLGDKILQVSFKTNK 323
>ASPGD|ASPL0000073559 [details] [associations]
symbol:AN10574 species:162425 "Emericella nidulans"
[GO:0006396 "RNA processing" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003107 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00386
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005622
GO:GO:0006396 EMBL:BN001303 ProteinModelPortal:C8VB25
EnsemblFungi:CADANIAT00005779 OMA:ERATRHC Uniprot:C8VB25
Length = 1290
Score = 170 (64.9 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 43/152 (28%), Positives = 77/152 (50%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L V N P+ D + + F K+G + D+R K + R F + F T A A + ++
Sbjct: 907 LFVTNFPPTADENYIRDLFSKYGEIIDIRFPSLKYNTHRRFCYLQFKTSVAAHSA-LALD 965
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGN 156
G +G+ ++ + P ++ GP Y+ ++ V N+ + E++LK F +FG
Sbjct: 966 GSAVGNGLHLVVKIS-DPSRKQDRNGPI---YEGREIHVSNVNWSASEDDLKELFSRFGT 1021
Query: 157 IIEVKIVRDENGKSKGFGFIQFFSYKAAEKAI 188
+ V++ R +G SKGFG++ F S + A A+
Sbjct: 1022 VELVRLPRKVDGGSKGFGYVVFSSKEEATAAL 1053
Score = 129 (50.5 bits), Expect = 7.9e-05, Sum P(3) = 7.9e-05
Identities = 43/172 (25%), Positives = 80/172 (46%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMN 192
+FV N T DE ++ F K+G II+++ + + F ++QF + AA A+ ++
Sbjct: 907 LFVTNFPPTADENYIRDLFSKYGEIIDIRFPSLKYNTHRRFCYLQFKTSVAAHSALA-LD 965
Query: 193 GRMIQHNSTFVSLAEIXXXXXXXXXXXXXLLQPARKNKIFVANLPSNINNSEFEELFARF 252
G + + V + + R+ I V+N+ + + + +ELF+RF
Sbjct: 966 GSAVGNGLHLV----VKISDPSRKQDRNGPIYEGRE--IHVSNVNWSASEDDLKELFSRF 1019
Query: 253 GTITSSSLV-----SDKHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299
GT+ L K G++ F + AT A++ M+ F+ +PL V +S
Sbjct: 1020 GTVELVRLPRKVDGGSKGFGYVVFSSKEEATAALA-MHEQEFRGRPLHVKVS 1070
Score = 64 (27.6 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 20/92 (21%), Positives = 35/92 (38%)
Query: 227 RKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKHIGFIEFIMPKHATHAVSTMNG 286
R + + N+P +N++ L +G + L D +E+ HA A + G
Sbjct: 1113 RDRTLGLMNVPDTVNDARIRALAEPYGKLVKVVLRPDHQGAIVEYADVNHAGKAALELEG 1172
Query: 287 H-VFKSKPLKVTLSGT--KPGVSITNPTKAPK 315
+ + L + G K P +APK
Sbjct: 1173 QEITPGRKLHIGTVGEMLKQSAEKKAPVQAPK 1204
Score = 45 (20.9 bits), Expect = 7.9e-05, Sum P(3) = 7.9e-05
Identities = 10/35 (28%), Positives = 22/35 (62%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDE 73
VN++ P +N + + +++ L+D+R AR + D+
Sbjct: 223 VNHVYPP-NNPDIHGDPREYDLLKDMRTAREEMDK 256
Score = 39 (18.8 bits), Expect = 5.7e-09, Sum P(2) = 5.7e-09
Identities = 12/44 (27%), Positives = 18/44 (40%)
Query: 290 KSKPLKVTLSGTKPGVSITNPT---KAPKKPAYIDEVKNVIGIK 330
K P++ KP S PT K P +P + +G+K
Sbjct: 1196 KKAPVQAPKPKDKPKSSFLTPTAPIKRPPQPGGRSGKRGHLGVK 1239
Score = 38 (18.4 bits), Expect = 7.2e-09, Sum P(2) = 7.2e-09
Identities = 10/38 (26%), Positives = 16/38 (42%)
Query: 274 PKHATHAVSTMNGHVFKSKPLKVTLSGTKPGVSITNPT 311
P+ A +T+ V KS+ +G P + PT
Sbjct: 1072 PQGAKRIAATVVTRVGKSQSPAPEANGAPPATDLEEPT 1109
>UNIPROTKB|F1NZY6 [details] [associations]
symbol:CELF2 "CUGBP Elav-like family member 2" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GeneTree:ENSGT00560000076837 EMBL:AADN02039408
EMBL:AADN02039409 EMBL:AADN02039410 EMBL:AADN02039411
EMBL:AADN02039412 EMBL:AADN02039413 EMBL:AADN02039414
EMBL:AADN02039415 EMBL:AADN02039416 EMBL:AADN02039417
EMBL:AADN02039418 EMBL:AADN02039419 EMBL:AADN02039420
EMBL:AADN02039421 EMBL:AADN02039422 EMBL:AADN02039423
EMBL:AADN02039424 EMBL:AADN02039425 EMBL:AADN02039426
EMBL:AADN02039427 EMBL:AADN02039428 EMBL:AADN02039429
EMBL:AADN02039430 EMBL:AADN02039431 EMBL:AADN02039432
EMBL:AADN02039433 IPI:IPI00971429 Ensembl:ENSGALT00000010859
ArrayExpress:F1NZY6 Uniprot:F1NZY6
Length = 484
Score = 132 (51.5 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 39/159 (24%), Positives = 78/159 (49%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKND---ESRGFAIIVFNTPAEAKKARV 93
+ V + S + L F+ +G + + V R+++ +S+G + F T A +A+
Sbjct: 18 MFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQN 77
Query: 94 EMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIK 153
+ H I + P + +++KP K E++ K+F+ + + +E +++ F
Sbjct: 78 AL--HNIKTLPGMHHPIQMKPADSEKSNAVEDR-----KLFIGMVSKKCNENDIRVMFSP 130
Query: 154 FGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMN 192
FG I E +I+R +G S+G F+ F + A+ AI M+
Sbjct: 131 FGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMH 169
Score = 96 (38.9 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 23/78 (29%), Positives = 37/78 (47%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSDKH------IGFIEFIMPKHATHAVSTM 284
+F+ +LP + + ++F FG + S+ + DK GF+ + P A A+ M
Sbjct: 401 LFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAM 460
Query: 285 NGHVFKSKPLKVTLSGTK 302
NG K LKV L +K
Sbjct: 461 NGFQIGMKRLKVQLKRSK 478
>UNIPROTKB|E1C045 [details] [associations]
symbol:CELF2 "CUGBP Elav-like family member 2" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006376 "mRNA splice site selection"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006376
GeneTree:ENSGT00560000076837 IPI:IPI00587312 EMBL:AADN02039408
EMBL:AADN02039409 EMBL:AADN02039410 EMBL:AADN02039411
EMBL:AADN02039412 EMBL:AADN02039413 EMBL:AADN02039414
EMBL:AADN02039415 EMBL:AADN02039416 EMBL:AADN02039417
EMBL:AADN02039418 EMBL:AADN02039419 EMBL:AADN02039420
EMBL:AADN02039421 EMBL:AADN02039422 EMBL:AADN02039423
EMBL:AADN02039424 EMBL:AADN02039425 EMBL:AADN02039426
EMBL:AADN02039427 EMBL:AADN02039428 EMBL:AADN02039429
EMBL:AADN02039430 EMBL:AADN02039431 EMBL:AADN02039432
EMBL:AADN02039433 ProteinModelPortal:E1C045
Ensembl:ENSGALT00000010858 ArrayExpress:E1C045 Uniprot:E1C045
Length = 488
Score = 132 (51.5 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 39/159 (24%), Positives = 78/159 (49%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKND---ESRGFAIIVFNTPAEAKKARV 93
+ V + S + L F+ +G + + V R+++ +S+G + F T A +A+
Sbjct: 18 MFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQN 77
Query: 94 EMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIK 153
+ H I + P + +++KP K E++ K+F+ + + +E +++ F
Sbjct: 78 AL--HNIKTLPGMHHPIQMKPADSEKSNAVEDR-----KLFIGMVSKKCNENDIRVMFSP 130
Query: 154 FGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMN 192
FG I E +I+R +G S+G F+ F + A+ AI M+
Sbjct: 131 FGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMH 169
Score = 96 (38.9 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 23/78 (29%), Positives = 37/78 (47%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSDKH------IGFIEFIMPKHATHAVSTM 284
+F+ +LP + + ++F FG + S+ + DK GF+ + P A A+ M
Sbjct: 405 LFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAM 464
Query: 285 NGHVFKSKPLKVTLSGTK 302
NG K LKV L +K
Sbjct: 465 NGFQIGMKRLKVQLKRSK 482
>UNIPROTKB|F1P674 [details] [associations]
symbol:CELF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13207 GeneTree:ENSGT00560000076837 CTD:10659
OMA:TMRNEEL EMBL:AAEX03001288 EMBL:AAEX03001289 EMBL:AAEX03001290
RefSeq:XP_003433765.1 ProteinModelPortal:F1P674
Ensembl:ENSCAFT00000008021 GeneID:607310 KEGG:cfa:607310
Uniprot:F1P674
Length = 488
Score = 132 (51.5 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 39/159 (24%), Positives = 78/159 (49%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKND---ESRGFAIIVFNTPAEAKKARV 93
+ V + S + L F+ +G + + V R+++ +S+G + F T A +A+
Sbjct: 18 MFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQN 77
Query: 94 EMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIK 153
+ H I + P + +++KP K E++ K+F+ + + +E +++ F
Sbjct: 78 AL--HNIKTLPGMHHPIQMKPADSEKSNAVEDR-----KLFIGMVSKKCNENDIRVMFSP 130
Query: 154 FGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMN 192
FG I E +I+R +G S+G F+ F + A+ AI M+
Sbjct: 131 FGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMH 169
Score = 96 (38.9 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 23/78 (29%), Positives = 37/78 (47%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSDKH------IGFIEFIMPKHATHAVSTM 284
+F+ +LP + + ++F FG + S+ + DK GF+ + P A A+ M
Sbjct: 405 LFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAM 464
Query: 285 NGHVFKSKPLKVTLSGTK 302
NG K LKV L +K
Sbjct: 465 NGFQIGMKRLKVQLKRSK 482
>UNIPROTKB|F1P017 [details] [associations]
symbol:CELF2 "CUGBP Elav-like family member 2" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006376 "mRNA splice site selection"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006376
GeneTree:ENSGT00560000076837 OMA:TMRNEEL EMBL:AADN02039408
EMBL:AADN02039409 EMBL:AADN02039410 EMBL:AADN02039411
EMBL:AADN02039412 EMBL:AADN02039413 EMBL:AADN02039414
EMBL:AADN02039415 EMBL:AADN02039416 EMBL:AADN02039417
EMBL:AADN02039418 EMBL:AADN02039419 EMBL:AADN02039420
EMBL:AADN02039421 EMBL:AADN02039422 EMBL:AADN02039423
EMBL:AADN02039424 EMBL:AADN02039425 EMBL:AADN02039426
EMBL:AADN02039427 EMBL:AADN02039428 EMBL:AADN02039429
EMBL:AADN02039430 EMBL:AADN02039431 EMBL:AADN02039432
EMBL:AADN02039433 IPI:IPI00820413 Ensembl:ENSGALT00000040039
ArrayExpress:F1P017 Uniprot:F1P017
Length = 494
Score = 132 (51.5 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
Identities = 39/159 (24%), Positives = 78/159 (49%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKND---ESRGFAIIVFNTPAEAKKARV 93
+ V + S + L F+ +G + + V R+++ +S+G + F T A +A+
Sbjct: 24 MFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQN 83
Query: 94 EMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIK 153
+ H I + P + +++KP K E++ K+F+ + + +E +++ F
Sbjct: 84 AL--HNIKTLPGMHHPIQMKPADSEKSNAVEDR-----KLFIGMVSKKCNENDIRVMFSP 136
Query: 154 FGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMN 192
FG I E +I+R +G S+G F+ F + A+ AI M+
Sbjct: 137 FGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMH 175
Score = 96 (38.9 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
Identities = 23/78 (29%), Positives = 37/78 (47%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSDKH------IGFIEFIMPKHATHAVSTM 284
+F+ +LP + + ++F FG + S+ + DK GF+ + P A A+ M
Sbjct: 411 LFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAM 470
Query: 285 NGHVFKSKPLKVTLSGTK 302
NG K LKV L +K
Sbjct: 471 NGFQIGMKRLKVQLKRSK 488
>UNIPROTKB|Q5VZZ6 [details] [associations]
symbol:CELF2 "CUGBP Elav-like family member 2" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AC026887 HOVERGEN:HBG107646 HOGENOM:HOG000004754
EMBL:AL157704 EMBL:AL136320 IPI:IPI00845480 UniGene:Hs.309288
HGNC:HGNC:2550 EMBL:AL136369 EMBL:AL138769 EMBL:AL162408 SMR:Q5VZZ6
Ensembl:ENST00000354897 Uniprot:Q5VZZ6
Length = 498
Score = 132 (51.5 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
Identities = 39/159 (24%), Positives = 78/159 (49%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKND---ESRGFAIIVFNTPAEAKKARV 93
+ V + S + L F+ +G + + V R+++ +S+G + F T A +A+
Sbjct: 18 MFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQN 77
Query: 94 EMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIK 153
+ H I + P + +++KP K E++ K+F+ + + +E +++ F
Sbjct: 78 AL--HNIKTLPGMHHPIQMKPADSEKSNAVEDR-----KLFIGMVSKKCNENDIRVMFSP 130
Query: 154 FGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMN 192
FG I E +I+R +G S+G F+ F + A+ AI M+
Sbjct: 131 FGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMH 169
Score = 96 (38.9 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
Identities = 23/78 (29%), Positives = 37/78 (47%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSDKH------IGFIEFIMPKHATHAVSTM 284
+F+ +LP + + ++F FG + S+ + DK GF+ + P A A+ M
Sbjct: 415 LFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAM 474
Query: 285 NGHVFKSKPLKVTLSGTK 302
NG K LKV L +K
Sbjct: 475 NGFQIGMKRLKVQLKRSK 492
>ZFIN|ZDB-GENE-030131-618 [details] [associations]
symbol:hnrnpa0l "heterogeneous nuclear
ribonucleoprotein A0, like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-618
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104255 HOGENOM:HOG000234442 EMBL:BX088707
EMBL:BC050513 IPI:IPI00489762 UniGene:Dr.75590 UniGene:Dr.79301
SMR:Q7ZU48 STRING:Q7ZU48 Ensembl:ENSDART00000052511
InParanoid:Q7ZU48 OMA:ICRRIAP Uniprot:Q7ZU48
Length = 302
Score = 177 (67.4 bits), Expect = 1.6e-11, P = 1.6e-11
Identities = 44/155 (28%), Positives = 79/155 (50%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKN-DESRGFAIIVFNTPAEAKKARVEM 95
L V L ++ L F+++G L D V N+ SR F + +++ EA A +
Sbjct: 8 LFVGGLNVQTTDEGLRAHFEQYGQLTDCVVVMNQPLQRSRCFGFVTYSSTEEADAA-MSA 66
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
H++ V +LK + G E K K+FV L + +++E L+ +F +FG
Sbjct: 67 RPHIVDGNNV-----DLKRAVAREDAGKPEMLAKVKKIFVGGLKDDIEDEHLQDYFSQFG 121
Query: 156 NIIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAII 189
I + +++ D++ GK +GFGF+ F +A+KA++
Sbjct: 122 PIEKAQVITDKDTGKKRGFGFVYFDDNDSADKAVV 156
Score = 129 (50.5 bits), Expect = 8.0e-06, P = 8.0e-06
Identities = 38/140 (27%), Positives = 73/140 (52%)
Query: 132 KVFVKNL-VETVDEEELKSHFIKFGNIIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAII 189
K+FV L V+T DE L++HF ++G + + +V ++ +S+ FGF+ +Y + E+A
Sbjct: 7 KLFVGGLNVQTTDEG-LRAHFEQYGQLTDCVVVMNQPLQRSRCFGFV---TYSSTEEADA 62
Query: 190 EMNGR--MIQHNSTFVSLAEIXXXXXXXXXXXXXLLQPARKNKIFVANLPSNINNSEFEE 247
M+ R ++ N+ ++ +L A+ KIFV L +I + ++
Sbjct: 63 AMSARPHIVDGNNV-----DLKRAVAREDAGKPEML--AKVKKIFVGGLKDDIEDEHLQD 115
Query: 248 LFARFGTITSSSLVSDKHIG 267
F++FG I + +++DK G
Sbjct: 116 YFSQFGPIEKAQVITDKDTG 135
>UNIPROTKB|E5RJB9 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI01013146
ProteinModelPortal:E5RJB9 SMR:E5RJB9 Ensembl:ENST00000521865
ArrayExpress:E5RJB9 Bgee:E5RJB9 Uniprot:E5RJB9
Length = 129
Score = 161 (61.7 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 42/126 (33%), Positives = 63/126 (50%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L P V L +F G + +RV R+ S G+A + F PA+A++A M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N +I KPV I + + P R VG +F+KNL +++D + L F FG
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVG---------NIFIKNLDKSIDNKALYDTFSAFG 123
Query: 156 NIIEVK 161
NI+ K
Sbjct: 124 NILSCK 129
Score = 97 (39.2 bits), Expect = 0.00020, P = 0.00020
Identities = 33/138 (23%), Positives = 59/138 (42%)
Query: 121 VGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFF 179
+ P Y ++V +L V E L F G I+ +++ RD +S G+ ++ F
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 180 SYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXXXXXXXXLLQPARKNKIFVANLPSN 239
AE+A+ MN +I+ + ++ L+ + IF+ NL +
Sbjct: 61 QPADAERALDTMNFDVIKGKPVRIMWSQRDPS-----------LRKSGVGNIFIKNLDKS 109
Query: 240 INNSEFEELFARFGTITS 257
I+N + F+ FG I S
Sbjct: 110 IDNKALYDTFSAFGNILS 127
>UNIPROTKB|O95319 [details] [associations]
symbol:CELF2 "CUGBP Elav-like family member 2" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006396 "RNA processing"
evidence=TAS] [GO:0008016 "regulation of heart contraction"
evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0008016 GO:GO:0003723
GO:GO:0006396 EMBL:CH471072 EMBL:AC026887 HSSP:Q92879
HOVERGEN:HBG107646 KO:K13207 eggNOG:NOG251494 CTD:10659
EMBL:AF090694 EMBL:AF090693 EMBL:AF036956 EMBL:U69546 EMBL:AF295068
EMBL:AF295063 EMBL:AF295064 EMBL:AF295065 EMBL:AF295066
EMBL:AF295067 EMBL:AF314199 EMBL:AF432906 EMBL:AK316354
EMBL:AL157704 EMBL:AL136320 EMBL:BC036391 IPI:IPI00410277
IPI:IPI00607544 IPI:IPI00845479 IPI:IPI00845480 IPI:IPI00853320
RefSeq:NP_001020247.1 RefSeq:NP_001020248.1 RefSeq:NP_001077060.1
RefSeq:NP_006552.3 UniGene:Hs.309288 ProteinModelPortal:O95319
SMR:O95319 IntAct:O95319 MINT:MINT-2868664 STRING:O95319
PhosphoSite:O95319 UCD-2DPAGE:O95319 PaxDb:O95319 PRIDE:O95319
Ensembl:ENST00000315874 Ensembl:ENST00000354440
Ensembl:ENST00000379261 Ensembl:ENST00000399850
Ensembl:ENST00000416382 Ensembl:ENST00000417956
Ensembl:ENST00000427450 GeneID:10659 KEGG:hsa:10659 UCSC:uc001iki.4
UCSC:uc001ikk.2 UCSC:uc001iko.4 UCSC:uc001ikp.4 UCSC:uc010qbj.1
GeneCards:GC10P011049 HGNC:HGNC:2550 MIM:602538 neXtProt:NX_O95319
PharmGKB:PA27046 ChiTaRS:CELF2 GenomeRNAi:10659 NextBio:40529
ArrayExpress:O95319 Bgee:O95319 CleanEx:HS_CUGBP2
Genevestigator:O95319 Uniprot:O95319
Length = 508
Score = 132 (51.5 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
Identities = 39/159 (24%), Positives = 78/159 (49%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKND---ESRGFAIIVFNTPAEAKKARV 93
+ V + S + L F+ +G + + V R+++ +S+G + F T A +A+
Sbjct: 42 MFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQN 101
Query: 94 EMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIK 153
+ H I + P + +++KP K E++ K+F+ + + +E +++ F
Sbjct: 102 AL--HNIKTLPGMHHPIQMKPADSEKSNAVEDR-----KLFIGMVSKKCNENDIRVMFSP 154
Query: 154 FGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMN 192
FG I E +I+R +G S+G F+ F + A+ AI M+
Sbjct: 155 FGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMH 193
Score = 96 (38.9 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
Identities = 23/78 (29%), Positives = 37/78 (47%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSDKH------IGFIEFIMPKHATHAVSTM 284
+F+ +LP + + ++F FG + S+ + DK GF+ + P A A+ M
Sbjct: 425 LFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAM 484
Query: 285 NGHVFKSKPLKVTLSGTK 302
NG K LKV L +K
Sbjct: 485 NGFQIGMKRLKVQLKRSK 502
>MGI|MGI:1338822 [details] [associations]
symbol:Celf2 "CUGBP, Elav-like family member 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006376
"mRNA splice site selection" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1338822 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879
HOVERGEN:HBG107646 KO:K13207 eggNOG:NOG251494 GO:GO:0006376
GeneTree:ENSGT00560000076837 CTD:10659 ChiTaRS:CELF2 EMBL:AF090696
EMBL:AF090697 EMBL:Y18298 EMBL:AK137292 EMBL:AK151818 EMBL:AK152628
EMBL:AK153267 EMBL:AK160861 EMBL:AK161349 EMBL:AK164914
EMBL:AL929240 EMBL:AL845492 EMBL:AL845515 EMBL:BC026856
IPI:IPI00129146 IPI:IPI00651950 IPI:IPI00750780 IPI:IPI00751703
IPI:IPI00756899 IPI:IPI00853748 IPI:IPI00853844 IPI:IPI00853921
IPI:IPI00854018 IPI:IPI00854021 RefSeq:NP_001103698.1
RefSeq:NP_001103699.1 RefSeq:NP_001103700.1 RefSeq:NP_001103701.1
RefSeq:NP_001103702.1 RefSeq:NP_001153764.1 RefSeq:NP_001153765.1
RefSeq:NP_034290.2 UniGene:Mm.398543 ProteinModelPortal:Q9Z0H4
SMR:Q9Z0H4 STRING:Q9Z0H4 PhosphoSite:Q9Z0H4 PaxDb:Q9Z0H4
PRIDE:Q9Z0H4 Ensembl:ENSMUST00000002176 Ensembl:ENSMUST00000100429
Ensembl:ENSMUST00000114924 Ensembl:ENSMUST00000114927
Ensembl:ENSMUST00000114934 GeneID:14007 KEGG:mmu:14007
UCSC:uc008ign.1 UCSC:uc008igo.1 UCSC:uc008igp.1 UCSC:uc008igq.2
UCSC:uc008igs.2 UCSC:uc008igt.2 UCSC:uc008igv.2 InParanoid:Q9Z0H4
OMA:TMRNEEL NextBio:284908 Bgee:Q9Z0H4 CleanEx:MM_CUGBP2
Genevestigator:Q9Z0H4 Uniprot:Q9Z0H4
Length = 508
Score = 132 (51.5 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
Identities = 39/159 (24%), Positives = 78/159 (49%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKND---ESRGFAIIVFNTPAEAKKARV 93
+ V + S + L F+ +G + + V R+++ +S+G + F T A +A+
Sbjct: 42 MFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQN 101
Query: 94 EMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIK 153
+ H I + P + +++KP K E++ K+F+ + + +E +++ F
Sbjct: 102 AL--HNIKTLPGMHHPIQMKPADSEKSNAVEDR-----KLFIGMVSKKCNENDIRVMFSP 154
Query: 154 FGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMN 192
FG I E +I+R +G S+G F+ F + A+ AI M+
Sbjct: 155 FGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMH 193
Score = 96 (38.9 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
Identities = 23/78 (29%), Positives = 37/78 (47%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSDKH------IGFIEFIMPKHATHAVSTM 284
+F+ +LP + + ++F FG + S+ + DK GF+ + P A A+ M
Sbjct: 425 LFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAM 484
Query: 285 NGHVFKSKPLKVTLSGTK 302
NG K LKV L +K
Sbjct: 485 NGFQIGMKRLKVQLKRSK 502
>RGD|68347 [details] [associations]
symbol:Celf2 "CUGBP, Elav-like family member 2" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IDA] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0005737 "cytoplasm" evidence=IEA;ISO]
[GO:0006376 "mRNA splice site selection" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360 RGD:68347
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207
eggNOG:NOG251494 HOGENOM:HOG000004754 OrthoDB:EOG4N8R4X
GO:GO:0006376 GeneTree:ENSGT00560000076837 CTD:10659 OMA:TMRNEEL
EMBL:AF090695 EMBL:AJ010351 EMBL:AJ010386 EMBL:BC129096
IPI:IPI00212483 IPI:IPI00781372 IPI:IPI00854036 IPI:IPI00854042
RefSeq:NP_058893.2 UniGene:Rn.162247 ProteinModelPortal:Q792H5
SMR:Q792H5 STRING:Q792H5 PhosphoSite:Q792H5 PRIDE:Q792H5
Ensembl:ENSRNOT00000023436 GeneID:29428 KEGG:rno:29428
InParanoid:Q792H5 NextBio:609142 ArrayExpress:Q792H5
Genevestigator:Q792H5 Uniprot:Q792H5
Length = 508
Score = 132 (51.5 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
Identities = 39/159 (24%), Positives = 78/159 (49%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKND---ESRGFAIIVFNTPAEAKKARV 93
+ V + S + L F+ +G + + V R+++ +S+G + F T A +A+
Sbjct: 42 MFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQN 101
Query: 94 EMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIK 153
+ H I + P + +++KP K E++ K+F+ + + +E +++ F
Sbjct: 102 AL--HNIKTLPGMHHPIQMKPADSEKSNAVEDR-----KLFIGMVSKKCNENDIRVMFSP 154
Query: 154 FGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMN 192
FG I E +I+R +G S+G F+ F + A+ AI M+
Sbjct: 155 FGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMH 193
Score = 96 (38.9 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
Identities = 23/78 (29%), Positives = 37/78 (47%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSDKH------IGFIEFIMPKHATHAVSTM 284
+F+ +LP + + ++F FG + S+ + DK GF+ + P A A+ M
Sbjct: 425 LFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAM 484
Query: 285 NGHVFKSKPLKVTLSGTK 302
NG K LKV L +K
Sbjct: 485 NGFQIGMKRLKVQLKRSK 502
>UNIPROTKB|Q9NW13 [details] [associations]
symbol:RBM28 "RNA-binding protein 28" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005794 GO:GO:0005730 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 EMBL:CH471070 EMBL:CH236947 eggNOG:COG0724
EMBL:AC010655 KO:K14573 EMBL:AK001239 EMBL:AK222716 EMBL:AC018635
EMBL:BC013889 IPI:IPI00304187 RefSeq:NP_001159607.1
RefSeq:NP_060547.2 UniGene:Hs.274263 ProteinModelPortal:Q9NW13
SMR:Q9NW13 IntAct:Q9NW13 STRING:Q9NW13 PhosphoSite:Q9NW13
DMDM:55976611 SWISS-2DPAGE:Q9NW13 PaxDb:Q9NW13 PeptideAtlas:Q9NW13
PRIDE:Q9NW13 Ensembl:ENST00000223073 GeneID:55131 KEGG:hsa:55131
UCSC:uc003vmp.2 CTD:55131 GeneCards:GC07M127951 HGNC:HGNC:21863
HPA:HPA019058 HPA:HPA026672 MIM:612074 MIM:612079
neXtProt:NX_Q9NW13 Orphanet:157954 PharmGKB:PA134867266
HOGENOM:HOG000124666 HOVERGEN:HBG073213 InParanoid:Q9NW13
OMA:MRSKPAT OrthoDB:EOG4SN1NH PhylomeDB:Q9NW13 ChiTaRS:RBM28
GenomeRNAi:55131 NextBio:58802 ArrayExpress:Q9NW13 Bgee:Q9NW13
CleanEx:HS_RBM28 Genevestigator:Q9NW13 GermOnline:ENSG00000106344
Uniprot:Q9NW13
Length = 759
Score = 172 (65.6 bits), Expect = 1.9e-11, Sum P(2) = 1.9e-11
Identities = 54/186 (29%), Positives = 92/186 (49%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDES-RGFAIIVFNTPAEAKKARVEM 95
L V L PS ++ L F + G ++ V K ++ RGF + F+ + ++A E+
Sbjct: 6 LFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEI 65
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVG-----------PEEKQYK----KDKVFVKNLVE 140
G K + +T + K ++K G P+ K+ K K ++ ++NL
Sbjct: 66 TT-FEGCK-INVTVAKKKLRNKTKEKGKNENSECPKKEPKAKKAKVADKKARLIIRNLSF 123
Query: 141 TVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNS 200
E++LK+ F +FG ++EV I R +GK +GFGF+QF + A KA+ MN + I+ +
Sbjct: 124 KCSEDDLKTVFAQFGAVLEVNIPRKPDGKMRGFGFVQFKNLLEAGKALKGMNMKEIKGRT 183
Query: 201 TFVSLA 206
V A
Sbjct: 184 VAVDWA 189
Score = 93 (37.8 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 32/117 (27%), Positives = 49/117 (41%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L + NL L F +FG + +V + R + + RGF + F EA KA MN
Sbjct: 116 LIIRNLSFKCSEDDLKTVFAQFGAVLEVNIPRKPDGKMRGFGFVQFKNLLEAGKALKGMN 175
Query: 97 GHLIGSKPVIITFV----ELKPGQRSKPVGPEEKQYKKDKVFVKNL---VETVDEEE 146
I + V + + + K Q +G E+ K + VK E ++EEE
Sbjct: 176 MKEIKGRTVAVDWAVAKDKYKDTQSVSAIGEEKSHESKHQESVKKKGREEEDMEEEE 232
Score = 92 (37.4 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 22/58 (37%), Positives = 34/58 (58%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIV-RDENGKSKGFGFIQFFSYKAAEKAII 189
VF++NL +EEEL +FG + V+IV + SKG F QF + +AA+K ++
Sbjct: 337 VFIRNLSFDSEEEELGELLQQFGELKYVRIVLHPDTEHSKGCAFAQFMTQEAAQKCLL 394
Score = 55 (24.4 bits), Expect = 1.9e-11, Sum P(2) = 1.9e-11
Identities = 27/99 (27%), Positives = 40/99 (40%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLV------SDKHIGFIEFIMPKHATH---AV 281
+F+ NL + E EL +FG + +V K F +F+ + A A
Sbjct: 337 VFIRNLSFDSEEEELGELLQQFGELKYVRIVLHPDTEHSKGCAFAQFMTQEAAQKCLLAA 396
Query: 282 STMN---GHVFKSKPLKVTLSGTKPGVSITNPTKAPKKP 317
S N G + LKV L+ T+ + TK KKP
Sbjct: 397 SPENEAGGLKLDGRQLKVDLAVTRDEAAKLQTTKV-KKP 434
>UNIPROTKB|E9PC62 [details] [associations]
symbol:CELF2 "CUGBP Elav-like family member 2" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006376 "mRNA splice site selection"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC026887 KO:K13207
GO:GO:0006376 CTD:10659 EMBL:AL157704 EMBL:AL136320 IPI:IPI00845479
RefSeq:NP_006552.3 UniGene:Hs.309288 GeneID:10659 KEGG:hsa:10659
HGNC:HGNC:2550 ChiTaRS:CELF2 GenomeRNAi:10659 NextBio:40529
OMA:TMRNEEL EMBL:AL136369 EMBL:AL138769 EMBL:AL162408 SMR:E9PC62
Ensembl:ENST00000450189 Ensembl:ENST00000542579 UCSC:uc001ikl.4
Uniprot:E9PC62
Length = 521
Score = 132 (51.5 bits), Expect = 1.9e-11, Sum P(2) = 1.9e-11
Identities = 39/159 (24%), Positives = 78/159 (49%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKND---ESRGFAIIVFNTPAEAKKARV 93
+ V + S + L F+ +G + + V R+++ +S+G + F T A +A+
Sbjct: 49 MFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQN 108
Query: 94 EMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIK 153
+ H I + P + +++KP K E++ K+F+ + + +E +++ F
Sbjct: 109 AL--HNIKTLPGMHHPIQMKPADSEKSNAVEDR-----KLFIGMVSKKCNENDIRVMFSP 161
Query: 154 FGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMN 192
FG I E +I+R +G S+G F+ F + A+ AI M+
Sbjct: 162 FGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMH 200
Score = 96 (38.9 bits), Expect = 1.9e-11, Sum P(2) = 1.9e-11
Identities = 23/78 (29%), Positives = 37/78 (47%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSDKH------IGFIEFIMPKHATHAVSTM 284
+F+ +LP + + ++F FG + S+ + DK GF+ + P A A+ M
Sbjct: 438 LFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAM 497
Query: 285 NGHVFKSKPLKVTLSGTK 302
NG K LKV L +K
Sbjct: 498 NGFQIGMKRLKVQLKRSK 515
>UNIPROTKB|E1B8K6 [details] [associations]
symbol:NCL "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K11294
GeneTree:ENSGT00550000074656 CTD:4691 EMBL:DAAA02006195
IPI:IPI00971535 RefSeq:NP_001193589.1 UniGene:Bt.107977
UniGene:Bt.108558 UniGene:Bt.7403 UniGene:Bt.79166
ProteinModelPortal:E1B8K6 IntAct:E1B8K6 PRIDE:E1B8K6
Ensembl:ENSBTAT00000021529 GeneID:497013 KEGG:bta:497013
OMA:RLEYSQS NextBio:20865826 Uniprot:E1B8K6
Length = 720
Score = 184 (69.8 bits), Expect = 1.9e-11, P = 1.9e-11
Identities = 72/258 (27%), Positives = 119/258 (46%)
Query: 53 NEFKK-FGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVE 111
+E K+ F ++R+ +K+ +S+G A I F T A+A+K E G I + + + +
Sbjct: 417 DELKEVFEDAVEIRLV-SKDGKSKGIAYIEFKTEADAEKTLEEKQGTEIDGRSISLYYTG 475
Query: 112 LKPGQRSKPVGPEEKQYK-KDKVFV-KNLVETVDEEELKSHFIKFGNIIEVKIVRDENGK 169
K GQ G + + + K V NL + EE L+ F K +I K+ +++NGK
Sbjct: 476 EK-GQSQDHRGGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATHI---KVPQNQNGK 531
Query: 170 SKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXXXXXXXXLLQPARKN 229
SKG+ FI+F S++ A++A+ N R I+ + + L QP++
Sbjct: 532 SKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARS-------QPSKT- 583
Query: 230 KIFVANLPSNINNSEFEELF---ARFGTITSSSLVSDKHIGFIEFIMPKHATHAVSTM-N 285
+FV L + +E F R +T S K GF++F + A A M +
Sbjct: 584 -LFVKGLSEDTTEETLKESFDGSIRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMED 642
Query: 286 GHVFKSKPLKVTLSGTKP 303
G + +K VTL KP
Sbjct: 643 GEIDGNK---VTLDWAKP 657
>GENEDB_PFALCIPARUM|MAL13P1.120 [details] [associations]
symbol:MAL13P1.120 "splicing factor,
putative" species:5833 "Plasmodium falciparum" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0003729 GO:GO:0006397
Gene3D:3.30.70.330 EMBL:AL844509 HSSP:Q60900 TIGRFAMs:TIGR01622
KO:K13091 OMA:VDINIDE RefSeq:XP_001349956.1
ProteinModelPortal:Q8IE99 IntAct:Q8IE99 MINT:MINT-1582995
EnsemblProtists:MAL13P1.120:mRNA GeneID:813670 KEGG:pfa:MAL13P1.120
EuPathDB:PlasmoDB:PF3D7_1321700 ProtClustDB:CLSZ2848098
Uniprot:Q8IE99
Length = 864
Score = 185 (70.2 bits), Expect = 1.9e-11, P = 1.9e-11
Identities = 54/180 (30%), Positives = 94/180 (52%)
Query: 39 VNNLEPSVDNQALINEFKKF-GTLRDVRVARN-KNDESRGFAIIVFNTPAEAKKARVEMN 96
V NL+ D + + F + G +RD++ ++ ++ +S+G A + F T KA + N
Sbjct: 491 VLNLDLKADERDIYEFFSEVAGKVRDIQCIKDQRSGKSKGVAYVEFYTQEAVIKA-LAAN 549
Query: 97 GHLIGSKPVIITFVELKPGQRSK-----PVGPEEKQYKKDKVFVKNLV---ETVDEEELK 148
G ++ ++P+ I + + + +K P+ P + K +++ L+ + E+ELK
Sbjct: 550 GMMLKNRPIKIQSSQAEKNRAAKAAKHQPIDPNDIPLK---LYIGGLLGPLSNITEQELK 606
Query: 149 SHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
F FG+I++V+I RD GKSKGFGFIQF A +A+ MNG + V A+
Sbjct: 607 QLFNPFGDILDVEIHRDPYTGKSKGFGFIQFHKASEAIEALTVMNGMEVAGREIKVGYAQ 666
Score = 159 (61.0 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 52/190 (27%), Positives = 90/190 (47%)
Query: 124 EEKQYKKDK--VFVKNLVETVDEEELKSHFIKF-GNIIEVKIVRDE-NGKSKGFGFIQFF 179
E ++ K+D V V NL DE ++ F + G + +++ ++D+ +GKSKG +++F+
Sbjct: 478 EMEEAKRDDLTVLVLNLDLKADERDIYEFFSEVAGKVRDIQCIKDQRSGKSKGVAYVEFY 537
Query: 180 SYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXXXXXXXXLLQPARKN----KIFVAN 235
+ +A KA+ NG M+++ + ++ QP N K+++
Sbjct: 538 TQEAVIKALAA-NGMMLKNRPIKIQSSQAEKNRAAKAAKH----QPIDPNDIPLKLYIGG 592
Query: 236 L--P-SNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNG 286
L P SNI E ++LF FG I + D K GFI+F A A++ MNG
Sbjct: 593 LLGPLSNITEQELKQLFNPFGDILDVEIHRDPYTGKSKGFGFIQFHKASEAIEALTVMNG 652
Query: 287 HVFKSKPLKV 296
+ +KV
Sbjct: 653 MEVAGREIKV 662
>UNIPROTKB|Q8IE99 [details] [associations]
symbol:MAL13P1.120 "Splicing factor, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0003729 GO:GO:0006397
Gene3D:3.30.70.330 EMBL:AL844509 HSSP:Q60900 TIGRFAMs:TIGR01622
KO:K13091 OMA:VDINIDE RefSeq:XP_001349956.1
ProteinModelPortal:Q8IE99 IntAct:Q8IE99 MINT:MINT-1582995
EnsemblProtists:MAL13P1.120:mRNA GeneID:813670 KEGG:pfa:MAL13P1.120
EuPathDB:PlasmoDB:PF3D7_1321700 ProtClustDB:CLSZ2848098
Uniprot:Q8IE99
Length = 864
Score = 185 (70.2 bits), Expect = 1.9e-11, P = 1.9e-11
Identities = 54/180 (30%), Positives = 94/180 (52%)
Query: 39 VNNLEPSVDNQALINEFKKF-GTLRDVRVARN-KNDESRGFAIIVFNTPAEAKKARVEMN 96
V NL+ D + + F + G +RD++ ++ ++ +S+G A + F T KA + N
Sbjct: 491 VLNLDLKADERDIYEFFSEVAGKVRDIQCIKDQRSGKSKGVAYVEFYTQEAVIKA-LAAN 549
Query: 97 GHLIGSKPVIITFVELKPGQRSK-----PVGPEEKQYKKDKVFVKNLV---ETVDEEELK 148
G ++ ++P+ I + + + +K P+ P + K +++ L+ + E+ELK
Sbjct: 550 GMMLKNRPIKIQSSQAEKNRAAKAAKHQPIDPNDIPLK---LYIGGLLGPLSNITEQELK 606
Query: 149 SHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
F FG+I++V+I RD GKSKGFGFIQF A +A+ MNG + V A+
Sbjct: 607 QLFNPFGDILDVEIHRDPYTGKSKGFGFIQFHKASEAIEALTVMNGMEVAGREIKVGYAQ 666
Score = 159 (61.0 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 52/190 (27%), Positives = 90/190 (47%)
Query: 124 EEKQYKKDK--VFVKNLVETVDEEELKSHFIKF-GNIIEVKIVRDE-NGKSKGFGFIQFF 179
E ++ K+D V V NL DE ++ F + G + +++ ++D+ +GKSKG +++F+
Sbjct: 478 EMEEAKRDDLTVLVLNLDLKADERDIYEFFSEVAGKVRDIQCIKDQRSGKSKGVAYVEFY 537
Query: 180 SYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXXXXXXXXLLQPARKN----KIFVAN 235
+ +A KA+ NG M+++ + ++ QP N K+++
Sbjct: 538 TQEAVIKALAA-NGMMLKNRPIKIQSSQAEKNRAAKAAKH----QPIDPNDIPLKLYIGG 592
Query: 236 L--P-SNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNG 286
L P SNI E ++LF FG I + D K GFI+F A A++ MNG
Sbjct: 593 LLGPLSNITEQELKQLFNPFGDILDVEIHRDPYTGKSKGFGFIQFHKASEAIEALTVMNG 652
Query: 287 HVFKSKPLKV 296
+ +KV
Sbjct: 653 MEVAGREIKV 662
>ASPGD|ASPL0000076731 [details] [associations]
symbol:AN4865 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:BN001303 EMBL:AACD01000084 eggNOG:COG0724
KO:K11294 OrthoDB:EOG422DTZ RefSeq:XP_662469.1
ProteinModelPortal:Q5B3L5 STRING:Q5B3L5
EnsemblFungi:CADANIAT00005540 GeneID:2872664 KEGG:ani:AN4865.2
HOGENOM:HOG000195050 OMA:SARIMTE Uniprot:Q5B3L5
Length = 524
Score = 182 (69.1 bits), Expect = 1.9e-11, P = 1.9e-11
Identities = 52/191 (27%), Positives = 85/191 (44%)
Query: 18 DDEGARSXXXXXXXXXXXXLHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGF 77
++ A S L V NL +V + L EF++FG L + SRGF
Sbjct: 260 EEPAAASKKSKTEEGASANLFVGNLSWNVTEEWLHQEFEQFGELSARIMTERDTGRSRGF 319
Query: 78 AIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYK-------- 129
+ F A+A KA M H I + + + + +P + + E Q +
Sbjct: 320 GYVEFTNAADAAKAYEAMKEHEIDGRKINLDYATGRPANKDQGGFKERAQNRARSFGDQT 379
Query: 130 ---KDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRD-ENGKSKGFGFIQFFSYKAAE 185
D +FV NL + +E+ + F GN++ +++ D E+G+ KGFG++Q+ S A
Sbjct: 380 SPESDTLFVGNLPFSANEDSVHEVFGPQGNVLGIRLPTDMESGRPKGFGYVQYSSVDEAR 439
Query: 186 KAIIEMNGRMI 196
KA E+ G I
Sbjct: 440 KAYNELQGAEI 450
Score = 126 (49.4 bits), Expect = 4.8e-05, P = 4.8e-05
Identities = 49/204 (24%), Positives = 78/204 (38%)
Query: 111 ELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKS 170
E +P SK EE +FV NL V EE L F +FG + + + G+S
Sbjct: 259 EEEPAAASKKSKTEEGA--SANLFVGNLSWNVTEEWLHQEFEQFGELSARIMTERDTGRS 316
Query: 171 KGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXXXXXXXXLLQPARK-- 228
+GFG+++F + A KA M I + A AR
Sbjct: 317 RGFGYVEFTNAADAAKAYEAMKEHEIDGRKINLDYATGRPANKDQGGFKERAQNRARSFG 376
Query: 229 -------NKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPK 275
+ +FV NLP + N E+F G + L +D K G++++
Sbjct: 377 DQTSPESDTLFVGNLPFSANEDSVHEVFGPQGNVLGIRLPTDMESGRPKGFGYVQYSSVD 436
Query: 276 HATHAVSTMNGHVFKSKPLKVTLS 299
A A + + G +P+++ S
Sbjct: 437 EARKAYNELQGAEIDGRPIRLDFS 460
>UNIPROTKB|Q7T2T1 [details] [associations]
symbol:CELF2 "CUGBP Elav-like family member 2" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879 HOVERGEN:HBG107646
KO:K13207 eggNOG:NOG251494 HOGENOM:HOG000004754 EMBL:AY288985
EMBL:AY288986 IPI:IPI00574339 IPI:IPI00587312 RefSeq:NP_989591.1
UniGene:Gga.4919 ProteinModelPortal:Q7T2T1 SMR:Q7T2T1 STRING:Q7T2T1
PRIDE:Q7T2T1 GeneID:374111 KEGG:gga:374111 CTD:10659
InParanoid:Q7T2T1 NextBio:20813628 Uniprot:Q7T2T1
Length = 484
Score = 131 (51.2 bits), Expect = 1.9e-11, Sum P(2) = 1.9e-11
Identities = 39/157 (24%), Positives = 77/157 (49%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNKND---ESRGFAIIVFNTPAEAKKARVEM 95
V + S + L F+ +G + + V R+++ +S+G + F T A +A+ +
Sbjct: 20 VGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNAL 79
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
H I + P + +++KP K E++ K+F+ + + +E +++ F FG
Sbjct: 80 --HNIKTLPGMHHPIQMKPADSEKSNAVEDR-----KLFIGMVSKKCNENDIRVMFSPFG 132
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMN 192
I E +I+R +G S+G F+ F + A+ AI M+
Sbjct: 133 QIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMH 169
Score = 96 (38.9 bits), Expect = 1.9e-11, Sum P(2) = 1.9e-11
Identities = 23/78 (29%), Positives = 37/78 (47%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSDKH------IGFIEFIMPKHATHAVSTM 284
+F+ +LP + + ++F FG + S+ + DK GF+ + P A A+ M
Sbjct: 401 LFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAM 460
Query: 285 NGHVFKSKPLKVTLSGTK 302
NG K LKV L +K
Sbjct: 461 NGFQIGMKRLKVQLKRSK 478
>ZFIN|ZDB-GENE-030131-1506 [details] [associations]
symbol:tia1 "cytotoxic granule-associated RNA
binding protein 1" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030131-1506 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 HSSP:P11940
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 OMA:WAVEPGQ
EMBL:CT027545 EMBL:AL928954 EMBL:BC045368 IPI:IPI00511851
RefSeq:NP_997793.1 UniGene:Dr.159520 SMR:Q7ZVY0
Ensembl:ENSDART00000074400 GeneID:793165 KEGG:dre:793165
InParanoid:Q7ZVY0 NextBio:20931339 Uniprot:Q7ZVY0
Length = 386
Score = 179 (68.1 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 64/262 (24%), Positives = 111/262 (42%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK--NDESRGFAIIVFNTPAEAKKARVE 94
L+V NL V ++ F + G + ++ + ND + + F A +
Sbjct: 10 LYVGNLSRDVTEALIMQLFGQIGPCKSCKMIVDTAGNDP---YCFVEFFEHRHAAASLAA 66
Query: 95 MNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKF 154
MNG I K E+K + P ++ VFV +L + +++++ F F
Sbjct: 67 MNGRKIMGK-------EVKVNWATSPSSQKKDTSNHFHVFVGDLSPEITTDDIRAAFAPF 119
Query: 155 GNIIEVKIVRD-ENGKSKGFGFIQFFSYKAAEKAIIEMNG-----RMIQHN-STFVSLAE 207
G I + ++V+D GKSKG+GF+ FF+ AE AI +M G R I+ N +T A
Sbjct: 120 GRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAP 179
Query: 208 IXXXXXXXXXXXXXLL--QPARKN-KIFVANLPSNINNSEFEELFARFGTITSSSLVSDK 264
+ Q + N ++ + + + + F+ FG I + DK
Sbjct: 180 KATYETNTKHLSFDEVVNQSSPSNCTVYCGGVTTGLTEQLMRQTFSPFGQIMEVRVFPDK 239
Query: 265 HIGFIEFIMPKHATHAVSTMNG 286
F+ F + A HA+ ++NG
Sbjct: 240 GYSFVRFNSHESAAHAIVSVNG 261
Score = 144 (55.7 bits), Expect = 2.6e-07, P = 2.6e-07
Identities = 40/171 (23%), Positives = 77/171 (45%)
Query: 39 VNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEMNG 97
V +L P + + F FG + D RV ++ +S+G+ + F +A+ A +M G
Sbjct: 100 VGDLSPEITTDDIRAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGG 159
Query: 98 HLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKV-----------FVKNLVETVDEEE 146
+G + + + KP K D+V + + + E+
Sbjct: 160 QWLGGRQIRTNWATRKPPAPKATYETNTKHLSFDEVVNQSSPSNCTVYCGGVTTGLTEQL 219
Query: 147 LKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQ 197
++ F FG I+EV++ D KG+ F++F S+++A AI+ +NG ++
Sbjct: 220 MRQTFSPFGQIMEVRVFPD-----KGYSFVRFNSHESAAHAIVSVNGTSLE 265
Score = 124 (48.7 bits), Expect = 4.8e-05, P = 4.8e-05
Identities = 49/200 (24%), Positives = 77/200 (38%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMN 192
++V NL V E + F + G K++ D G + F++FF ++ A ++ MN
Sbjct: 10 LYVGNLSRDVTEALIMQLFGQIGPCKSCKMIVDTAGNDP-YCFVEFFEHRHAAASLAAMN 68
Query: 193 GRMIQHNSTFVSLAEIXXXXXXXXXXXXXLLQPARKNKIFVANLPSNINNSEFEELFARF 252
GR I V+ A + +FV +L I + FA F
Sbjct: 69 GRKIMGKEVKVNWA---------TSPSSQKKDTSNHFHVFVGDLSPEITTDDIRAAFAPF 119
Query: 253 GTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKPGV- 305
G I+ + +V D K GF+ F A +A+ M G + ++ + KP
Sbjct: 120 GRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAP 179
Query: 306 SITNPTKAPKKPAYIDEVKN 325
T T K DEV N
Sbjct: 180 KATYETNT--KHLSFDEVVN 197
>ZFIN|ZDB-GENE-000210-17 [details] [associations]
symbol:hug "HuG" species:7955 "Danio rerio"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-000210-17 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:CR550302 IPI:IPI00998450
ProteinModelPortal:F1QUX1 Ensembl:ENSDART00000122728
ArrayExpress:F1QUX1 Bgee:F1QUX1 Uniprot:F1QUX1
Length = 368
Score = 150 (57.9 bits), Expect = 4.8e-08, P = 4.8e-08
Identities = 50/195 (25%), Positives = 87/195 (44%)
Query: 114 PGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDEN------ 167
P P+G E K + + + L + + +EEL+S F G + K++RD+
Sbjct: 40 PNGYEDPMGDEPSDAKTNLI-INYLPQNMSQEELRSLFSSIGEVESAKLIRDKMAGMSAH 98
Query: 168 ---GKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXXXXXXXXLLQ 224
G S G+GF+ + + AE+AI +NG +Q + VS A ++
Sbjct: 99 HTLGHSLGYGFVNYVNPSDAERAINTLNGLRLQSKTIKVSYARPSSDG----------IK 148
Query: 225 PARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKHIG------FIEFIMPKHAT 278
A ++++ LP + E++F ++G I +S ++ D+ G FI F A
Sbjct: 149 DAN---LYISGLPKTMTQKNVEDMFTQYGRIINSRILVDQASGLSRGVAFIRFDKRSEAE 205
Query: 279 HAVSTMNGHVFKSKP 293
A+ +NG SKP
Sbjct: 206 EAIKDLNG----SKP 216
Score = 134 (52.2 bits), Expect = 2.3e-11, Sum P(2) = 2.3e-11
Identities = 39/167 (23%), Positives = 81/167 (48%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKN---------DESRGFAIIVFNTPAE 87
L +N L ++ + L + F G + ++ R+K S G+ + + P++
Sbjct: 58 LIINYLPQNMSQEELRSLFSSIGEVESAKLIRDKMAGMSAHHTLGHSLGYGFVNYVNPSD 117
Query: 88 AKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEEL 147
A++A +NG + SK + +++ P K +++ L +T+ ++ +
Sbjct: 118 AERAINTLNGLRLQSKTIKVSYAR-----------PSSDGIKDANLYISGLPKTMTQKNV 166
Query: 148 KSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEMNG 193
+ F ++G II +I+ D+ +G S+G FI+F AE+AI ++NG
Sbjct: 167 EDMFTQYGRIINSRILVDQASGLSRGVAFIRFDKRSEAEEAIKDLNG 213
Score = 120 (47.3 bits), Expect = 4.5e-08, Sum P(2) = 4.5e-08
Identities = 27/62 (43%), Positives = 36/62 (58%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAIIEM 191
+FV NL + DE L F FG + VK++RD N K KGFGF+ +Y+ A AI +
Sbjct: 288 IFVYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTSKCKGFGFVTMTNYEEAAMAISSL 347
Query: 192 NG 193
NG
Sbjct: 348 NG 349
Score = 88 (36.0 bits), Expect = 2.3e-11, Sum P(2) = 2.3e-11
Identities = 22/78 (28%), Positives = 39/78 (50%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTM 284
IFV NL + + ++F FG +T+ ++ D K GF+ + A A+S++
Sbjct: 288 IFVYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTSKCKGFGFVTMTNYEEAAMAISSL 347
Query: 285 NGHVFKSKPLKVTLSGTK 302
NG+ K L+V+ +K
Sbjct: 348 NGYRLGDKVLQVSFKSSK 365
Score = 72 (30.4 bits), Expect = 4.5e-08, Sum P(2) = 4.5e-08
Identities = 21/83 (25%), Positives = 46/83 (55%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+++ L ++ + + + F ++G + + R+ ++ + SRG A I F+ +EA++A ++
Sbjct: 152 LYISGLPKTMTQKNVEDMFTQYGRIINSRILVDQASGLSRGVAFIRFDKRSEAEEAIKDL 211
Query: 96 NGHLIG--SKPVIITFVELKPGQ 116
NG S+P+ + F P Q
Sbjct: 212 NGSKPSGASEPITVKFAA-NPNQ 233
>UNIPROTKB|Q6GLB5 [details] [associations]
symbol:elavl1 "ELAV-like protein 1" species:8364 "Xenopus
(Silurana) tropicalis" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0005938 "cell cortex" evidence=ISS]
[GO:0007369 "gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA
binding" evidence=ISS] [GO:0008298 "intracellular mRNA
localization" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
[GO:0051259 "protein oligomerization" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0005634 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 GO:GO:0007369 eggNOG:COG0724
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:BC074585
RefSeq:NP_001005461.1 UniGene:Str.2596 ProteinModelPortal:Q6GLB5
SMR:Q6GLB5 STRING:Q6GLB5 PRIDE:Q6GLB5 GeneID:448062 KEGG:xtr:448062
Xenbase:XB-GENE-481800 InParanoid:Q6GLB5 Uniprot:Q6GLB5
Length = 326
Score = 171 (65.3 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 47/176 (26%), Positives = 86/176 (48%)
Query: 130 KDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAI 188
+ + V L + + ++EL+S F G + K++RD+ G S G+GF+ + + K AE+AI
Sbjct: 19 RTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAI 78
Query: 189 IEMNGRMIQHNSTFVSLAEIXXXXXXXXXXXXXLLQPARKNKIFVANLPSNINNSEFEEL 248
+NG +Q + VS+A + + ++++ LP + + E++
Sbjct: 79 NTLNGLRLQSKTIKVSVARPSS-------------ESIKDANLYISGLPRTMTQKDVEDM 125
Query: 249 FARFGTITSSSLVSDKHIG------FIEFIMPKHATHAVSTMNGHV--FKSKPLKV 296
F FG I +S ++ D+ G FI F A A+++ NGH S+P+ V
Sbjct: 126 FLPFGRIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNGHKPPGSSEPITV 181
Score = 139 (54.0 bits), Expect = 2.3e-11, Sum P(2) = 2.3e-11
Identities = 39/159 (24%), Positives = 75/159 (47%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L VN L ++ L + F G + ++ R+K S G+ + + +A++A +
Sbjct: 22 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINTL 81
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
NG + SK + ++ P + K +++ L T+ +++++ F+ FG
Sbjct: 82 NGLRLQSKTIKVSVAR-----------PSSESIKDANLYISGLPRTMTQKDVEDMFLPFG 130
Query: 156 NIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIEMNG 193
II +++ D+ G S+G FI+F AE+AI NG
Sbjct: 131 RIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNG 169
Score = 120 (47.3 bits), Expect = 6.9e-09, Sum P(2) = 6.9e-09
Identities = 26/62 (41%), Positives = 36/62 (58%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAIIEM 191
+F+ NL + DE L F FG + VK++RD N K KGFGF+ +Y+ A AI +
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 192 NG 193
NG
Sbjct: 306 NG 307
Score = 115 (45.5 bits), Expect = 0.00037, P = 0.00037
Identities = 25/78 (32%), Positives = 43/78 (55%)
Query: 228 KNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDK---H---IGFIEFIMPKHATHAV 281
+ + V LP N+ E LF+ G + S+ L+ DK H GF+ ++ K A A+
Sbjct: 19 RTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAI 78
Query: 282 STMNGHVFKSKPLKVTLS 299
+T+NG +SK +KV+++
Sbjct: 79 NTLNGLRLQSKTIKVSVA 96
Score = 80 (33.2 bits), Expect = 2.3e-11, Sum P(2) = 2.3e-11
Identities = 20/78 (25%), Positives = 38/78 (48%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTM 284
IF+ NL + + ++F FG +T+ ++ D K GF+ + A A++++
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 285 NGHVFKSKPLKVTLSGTK 302
NG+ K L+V +K
Sbjct: 306 NGYRLGDKTLQVFFKTSK 323
Score = 78 (32.5 bits), Expect = 6.9e-09, Sum P(2) = 6.9e-09
Identities = 24/83 (28%), Positives = 43/83 (51%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+++ L ++ + + + F FG + + RV ++ SRG A I F+ +EA++A
Sbjct: 108 LYISGLPRTMTQKDVEDMFLPFGRIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASF 167
Query: 96 NGHLI--GSKPVIITFVELKPGQ 116
NGH S+P+ + F P Q
Sbjct: 168 NGHKPPGSSEPITVKFAA-NPNQ 189
>TAIR|locus:2012211 [details] [associations]
symbol:RBP47A "RNA-binding protein 47A" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005634 GO:GO:0034605
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494
EMBL:AC011807 eggNOG:COG0724 GO:GO:0008143 HSSP:Q14103
IPI:IPI00529085 IPI:IPI01019950 PIR:F96532 RefSeq:NP_175383.1
UniGene:At.23595 ProteinModelPortal:F4I3B3 SMR:F4I3B3 IntAct:F4I3B3
PRIDE:F4I3B3 EnsemblPlants:AT1G49600.1 GeneID:841384
KEGG:ath:AT1G49600 TAIR:At1g49600 OMA:KLLAIHQ Uniprot:F4I3B3
Length = 445
Score = 180 (68.4 bits), Expect = 2.4e-11, P = 2.4e-11
Identities = 67/287 (23%), Positives = 119/287 (41%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKND-ESRGFAIIVFNTPAEAKKARVEM 95
L V +L +D L F + V+V RNK +S G+ + F + + A++A
Sbjct: 121 LWVGDLLHWMDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSRSAAEEALQSF 180
Query: 96 NGHLI--GSKPVIITFVELKPGQ-RSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFI 152
+G + +P + + G+ R+ GP+ +FV +L V + L F
Sbjct: 181 SGVTMPNAEQPFRLNWASFSTGEKRASENGPDLS------IFVGDLAPDVSDAVLLETFA 234
Query: 153 -KFGNIIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXX 210
++ ++ K+V D N G+SKG+GF++F +A+ EMNG V +A
Sbjct: 235 GRYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTEMNGAFCSSRQMRVGIATPKR 294
Query: 211 XXXXXXXXXXXLLQPA--------------RKNKIFVANLPSNINNSEFEELFARFGTIT 256
L A + IFV L +++ + + F+ FG +
Sbjct: 295 AAAYGQQNGSQALTLAGGHGGNGSMSDGESNNSTIFVGGLDADVTEEDLMQPFSDFGEVV 354
Query: 257 SSSLVSDKHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKP 303
S + K GF++F + A A+ +NG V ++++ G P
Sbjct: 355 SVKIPVGKGCGFVQFANRQSAEEAIGNLNGTVIGKNTVRLSW-GRSP 400
>UNIPROTKB|P19338 [details] [associations]
symbol:NCL "Nucleolin" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IPI] [GO:0001525 "angiogenesis" evidence=IDA]
[GO:0005938 "cell cortex" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0042162 "telomeric DNA binding"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938
Pathway_Interaction_DB:telomerasepathway GO:GO:0005654
GO:GO:0005730 Pathway_Interaction_DB:aurora_b_pathway GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0001525 GO:GO:0003723 GO:GO:0030529
GO:GO:0042162 EMBL:AC017104 eggNOG:COG0724 HOVERGEN:HBG002295
KO:K11294 CTD:4691 HOGENOM:HOG000113885 EMBL:M60858 EMBL:AK091742
IPI:IPI00604620 PIR:A35804 PIR:S53728 RefSeq:NP_005372.2
UniGene:Hs.79110 PDB:2FC8 PDB:2FC9 PDB:2KRR PDBsum:2FC8 PDBsum:2FC9
PDBsum:2KRR ProteinModelPortal:P19338 SMR:P19338 DIP:DIP-89N
IntAct:P19338 MINT:MINT-4999081 STRING:P19338 PhosphoSite:P19338
DMDM:90110781 DOSAC-COBS-2DPAGE:P19338 SWISS-2DPAGE:P19338
PaxDb:P19338 PRIDE:P19338 DNASU:4691 Ensembl:ENST00000322723
GeneID:4691 KEGG:hsa:4691 UCSC:uc002vru.3 GeneCards:GC02M232318
HGNC:HGNC:7667 HPA:CAB004210 HPA:HPA023981 MIM:164035
neXtProt:NX_P19338 PharmGKB:PA31469 InParanoid:P19338 OMA:KERDTRT
OrthoDB:EOG45MN5J PhylomeDB:P19338 ChiTaRS:NCL
EvolutionaryTrace:P19338 GenomeRNAi:4691 NextBio:18090
PMAP-CutDB:P19338 ArrayExpress:P19338 Bgee:P19338 CleanEx:HS_NCL
Genevestigator:P19338 GermOnline:ENSG00000115053 Uniprot:P19338
Length = 710
Score = 183 (69.5 bits), Expect = 2.4e-11, P = 2.4e-11
Identities = 71/258 (27%), Positives = 118/258 (45%)
Query: 53 NEFKK-FGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVE 111
+E K+ F ++R+ +K+ +S+G A I F T A+A+K E G I + + + +
Sbjct: 407 DELKEVFEDAAEIRLV-SKDGKSKGIAYIEFKTEADAEKTFEEKQGTEIDGRSISLYYTG 465
Query: 112 LKPGQRSKPVGPEEKQYK-KDKVFV-KNLVETVDEEELKSHFIKFGNIIEVKIVRDENGK 169
K GQ G + + + K V NL + EE L+ F K +K+ +++NGK
Sbjct: 466 EK-GQNQDYRGGKNSTWSGESKTLVLSNLSYSATEETLQEVFEK---ATFIKVPQNQNGK 521
Query: 170 SKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXXXXXXXXLLQPARKN 229
SKG+ FI+F S++ A++A+ N R I+ + + L QP++
Sbjct: 522 SKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARS-------QPSKT- 573
Query: 230 KIFVANLPSNINNSEFEELF---ARFGTITSSSLVSDKHIGFIEFIMPKHATHAVSTM-N 285
+FV L + +E F R +T S K GF++F + A A M +
Sbjct: 574 -LFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMED 632
Query: 286 GHVFKSKPLKVTLSGTKP 303
G + +K VTL KP
Sbjct: 633 GEIDGNK---VTLDWAKP 647
>UNIPROTKB|Q4R4J7 [details] [associations]
symbol:NCL "Nucleolin" species:9541 "Macaca fascicularis"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 OrthoDB:EOG45MN5J
EMBL:AB169897 EMBL:AB168220 ProteinModelPortal:Q4R4J7 SMR:Q4R4J7
PRIDE:Q4R4J7 Uniprot:Q4R4J7
Length = 711
Score = 183 (69.5 bits), Expect = 2.4e-11, P = 2.4e-11
Identities = 71/258 (27%), Positives = 118/258 (45%)
Query: 53 NEFKK-FGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVE 111
+E K+ F ++R+ +K+ +S+G A I F T A+A+K E G I + + + +
Sbjct: 408 DELKEVFEDAAEIRLV-SKDGKSKGIAYIEFKTEADAEKTFEEKQGTEIDGRSISLYYTG 466
Query: 112 LKPGQRSKPVGPEEKQYK-KDKVFV-KNLVETVDEEELKSHFIKFGNIIEVKIVRDENGK 169
K GQ G + + + K V NL + EE L+ F K +K+ +++NGK
Sbjct: 467 EK-GQNQDYRGGKNSTWSGESKTLVLSNLSYSATEETLQEVFEK---ATFIKVPQNQNGK 522
Query: 170 SKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXXXXXXXXLLQPARKN 229
SKG+ FI+F S++ A++A+ N R I+ + + L QP++
Sbjct: 523 SKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARS-------QPSKT- 574
Query: 230 KIFVANLPSNINNSEFEELF---ARFGTITSSSLVSDKHIGFIEFIMPKHATHAVSTM-N 285
+FV L + +E F R +T S K GF++F + A A M +
Sbjct: 575 -LFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMED 633
Query: 286 GHVFKSKPLKVTLSGTKP 303
G + +K VTL KP
Sbjct: 634 GEIDGNK---VTLDWAKP 648
>UNIPROTKB|Q5RF26 [details] [associations]
symbol:NCL "Nucleolin" species:9601 "Pongo abelii"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 KO:K11294 CTD:4691
EMBL:CR857335 RefSeq:NP_001127178.1 UniGene:Pab.18146
ProteinModelPortal:Q5RF26 SMR:Q5RF26 GeneID:100174230
KEGG:pon:100174230 InParanoid:Q5RF26 Uniprot:Q5RF26
Length = 712
Score = 183 (69.5 bits), Expect = 2.5e-11, P = 2.5e-11
Identities = 71/258 (27%), Positives = 118/258 (45%)
Query: 53 NEFKK-FGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVE 111
+E K+ F ++R+ +K+ +S+G A I F T A+A+K E G I + + + +
Sbjct: 409 DELKEVFEDAAEIRLV-SKDGKSKGIAYIEFKTEADAEKTFEEKQGTEIDGRSISLYYTG 467
Query: 112 LKPGQRSKPVGPEEKQYK-KDKVFV-KNLVETVDEEELKSHFIKFGNIIEVKIVRDENGK 169
K GQ G + + + K V NL + EE L+ F K +K+ +++NGK
Sbjct: 468 EK-GQNQDYRGGKNSTWSGESKTLVLSNLSYSATEETLQEVFEK---ATFIKVPQNQNGK 523
Query: 170 SKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXXXXXXXXLLQPARKN 229
SKG+ FI+F S++ A++A+ N R I+ + + L QP++
Sbjct: 524 SKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARS-------QPSKT- 575
Query: 230 KIFVANLPSNINNSEFEELF---ARFGTITSSSLVSDKHIGFIEFIMPKHATHAVSTM-N 285
+FV L + +E F R +T S K GF++F + A A M +
Sbjct: 576 -LFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMED 634
Query: 286 GHVFKSKPLKVTLSGTKP 303
G + +K VTL KP
Sbjct: 635 GEIDGNK---VTLDWAKP 649
>ZFIN|ZDB-GENE-040718-300 [details] [associations]
symbol:celf4 "CUGBP, Elav-like family member 4"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040718-300 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879
HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026 eggNOG:NOG251494
HOGENOM:HOG000004754 OrthoDB:EOG4RJG30 EMBL:BC076238
IPI:IPI00491989 RefSeq:NP_001002562.1 UniGene:Dr.81398
ProteinModelPortal:Q6DGV1 SMR:Q6DGV1 GeneID:436835 KEGG:dre:436835
CTD:56853 InParanoid:Q6DGV1 NextBio:20831267 ArrayExpress:Q6DGV1
Bgee:Q6DGV1 Uniprot:Q6DGV1
Length = 520
Score = 125 (49.1 bits), Expect = 2.8e-11, Sum P(2) = 2.8e-11
Identities = 40/158 (25%), Positives = 83/158 (52%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L + + ++D + L F++FG + ++ V +++ +G A + + A KA+ +
Sbjct: 49 LFIGQIPRNLDEKDLRPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCARESALKAQTAL 108
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
H + P + +++KP S+ G E++ K+FV L + E++++ F FG
Sbjct: 109 --HEQKTLPGMNRPIQVKPAD-SESRG-EDR-----KLFVGMLNKQQCEDDVRRLFESFG 159
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNG 193
+I E I+R +G SKG F+++ ++ A+ AI ++G
Sbjct: 160 SIEECTILRGPDGNSKGCAFVKYSTHAEAQAAISALHG 197
Score = 102 (41.0 bits), Expect = 2.8e-11, Sum P(2) = 2.8e-11
Identities = 26/78 (33%), Positives = 37/78 (47%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTM 284
+F+ +LP + E ++F FG + SS + D K GF+ F P A A+ +M
Sbjct: 437 LFIYHLPQEFGDGELMQMFLPFGNVISSKVFVDRATNQSKCFGFVSFDNPGSAQAAIQSM 496
Query: 285 NGHVFKSKPLKVTLSGTK 302
NG K LKV L K
Sbjct: 497 NGFQIGMKRLKVQLKRPK 514
Score = 91 (37.1 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 19/63 (30%), Positives = 37/63 (58%)
Query: 126 KQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAA 184
K + K+F+ + +DE++L+ F +FG I E+ +++D G KG F+ + + ++A
Sbjct: 42 KDHDAIKLFIGQIPRNLDEKDLRPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCARESA 101
Query: 185 EKA 187
KA
Sbjct: 102 LKA 104
>UNIPROTKB|C9JTN7 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000206748
EMBL:AC016700 HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00927286
ProteinModelPortal:C9JTN7 SMR:C9JTN7 STRING:C9JTN7
Ensembl:ENST00000445587 ArrayExpress:C9JTN7 Bgee:C9JTN7
Uniprot:C9JTN7
Length = 285
Score = 174 (66.3 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 67/283 (23%), Positives = 116/283 (40%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK--NDESRGFAIIVFNTPAEAKKARVE 94
L+V NL V ++ F + G ++ ++ + ND + + F+ A A
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP---YCFVEFHEHRHAAAALAA 65
Query: 95 MNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKF 154
MNG I K E+K + P ++ VFV +L + E++K+ F F
Sbjct: 66 MNGRKIMGK-------EVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPF 118
Query: 155 GNIIEVKIVRD-ENGKSKGFGFIQFFSYKAAEKAIIEMNG-----RMIQHN-STFVSLA- 206
G I + ++V+D GKSKG+GF+ FF+ AE AI +M G R I+ N +T A
Sbjct: 119 GRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAP 178
Query: 207 -EIXXXXXXXXXXXXXLLQPARKN-KIFVANLPSNINNSEFEELFARFGTITSSSLVSDK 264
+ Q + N ++ + S + + F+ FG I + DK
Sbjct: 179 KSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDK 238
Query: 265 HIGFIE-------FIMPKHATHAVSTMNGHVFKSKPLKVTLSG 300
F+ ++ P + NG + ++P ++G
Sbjct: 239 GYSFVRQTQSSAPWMGPNYGVQPPQGQNGSMLPNQPSGYRVAG 281
Score = 130 (50.8 bits), Expect = 5.2e-06, P = 5.2e-06
Identities = 48/199 (24%), Positives = 78/199 (39%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMN 192
++V NL V E + F + G K++ D G + F++F ++ A A+ MN
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHAAAALAAMN 67
Query: 193 GRMIQHNSTFVSLAEIXXXXXXXXXXXXXLLQPARKNKIFVANLPSNINNSEFEELFARF 252
GR I V+ A +FV +L I + + FA F
Sbjct: 68 GRKIMGKEVKVNWATTPSSQKKDTSNHFH---------VFVGDLSPEITTEDIKAAFAPF 118
Query: 253 GTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKPGVS 306
G I+ + +V D K GF+ F A +A+ M G + ++ + KP
Sbjct: 119 GRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAP 178
Query: 307 ITNPTKAPKKPAYIDEVKN 325
+ K+ +Y DEV N
Sbjct: 179 KSTYESNTKQLSY-DEVVN 196
>GENEDB_PFALCIPARUM|PF14_0194 [details] [associations]
symbol:PF14_0194 "spliceosome-associated
protein, putative" species:5833 "Plasmodium falciparum" [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0008380 "RNA splicing"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0008380 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003676 EMBL:AE014187
HSSP:P11940 KO:K12831 RefSeq:XP_001348367.1
ProteinModelPortal:Q8ILQ0 IntAct:Q8ILQ0 MINT:MINT-1577513
EnsemblProtists:PF14_0194:mRNA GeneID:811775 KEGG:pfa:PF14_0194
EuPathDB:PlasmoDB:PF3D7_1420000 ProtClustDB:CLSZ2501032
Uniprot:Q8ILQ0
Length = 484
Score = 180 (68.4 bits), Expect = 2.9e-11, P = 2.9e-11
Identities = 69/288 (23%), Positives = 126/288 (43%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L++ NL+ VD + L F + G +++V + R+K N G+ + + E + A +
Sbjct: 22 LYIANLDAQVDEEILCELFMQCGNVKNVHIPRDKINGYHAGYGFVEYEYEYECEYAANIL 81
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N + K + + +RS VG +F+ NL + VDE+ L F FG
Sbjct: 82 NMTKLFGKALRCN--KATQDKRSFDVGAN--------LFIGNLDDEVDEKMLFDIFSSFG 131
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXX 215
I+ VK++R+E+ SKG GFI + ++++++ AI MN + I + +S A
Sbjct: 132 QIMTVKVMRNEDDTSKGHGFISYDNFESSDLAIENMNNQFICNKKVHISYAFKKDSKGER 191
Query: 216 XXXXXXLLQPARKN-KIFVANLPSNINNSEFEELFARFGTI-----TSSSLVSDKHIG-- 267
A K ++ N +N NN+ F I T+ +L ++ ++
Sbjct: 192 HGTAAERFIAANKALNLYPLN-ENNNNNNVNPSPFTSSNDIPLTNNTTLNLTNNVYLNNT 250
Query: 268 -FIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKPGVSITNPTKAP 314
I+PK + +S + + + P + T S + +PT P
Sbjct: 251 IITNNIIPKLSNDTISPIMNNFYPPNPHQPTSSNYLQA-QVGHPTNIP 297
>UNIPROTKB|Q8ILQ0 [details] [associations]
symbol:PF14_0194 "Spliceosome-associated protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0005681 "spliceosomal
complex" evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0008380 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003676 EMBL:AE014187 HSSP:P11940 KO:K12831
RefSeq:XP_001348367.1 ProteinModelPortal:Q8ILQ0 IntAct:Q8ILQ0
MINT:MINT-1577513 EnsemblProtists:PF14_0194:mRNA GeneID:811775
KEGG:pfa:PF14_0194 EuPathDB:PlasmoDB:PF3D7_1420000
ProtClustDB:CLSZ2501032 Uniprot:Q8ILQ0
Length = 484
Score = 180 (68.4 bits), Expect = 2.9e-11, P = 2.9e-11
Identities = 69/288 (23%), Positives = 126/288 (43%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L++ NL+ VD + L F + G +++V + R+K N G+ + + E + A +
Sbjct: 22 LYIANLDAQVDEEILCELFMQCGNVKNVHIPRDKINGYHAGYGFVEYEYEYECEYAANIL 81
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
N + K + + +RS VG +F+ NL + VDE+ L F FG
Sbjct: 82 NMTKLFGKALRCN--KATQDKRSFDVGAN--------LFIGNLDDEVDEKMLFDIFSSFG 131
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXX 215
I+ VK++R+E+ SKG GFI + ++++++ AI MN + I + +S A
Sbjct: 132 QIMTVKVMRNEDDTSKGHGFISYDNFESSDLAIENMNNQFICNKKVHISYAFKKDSKGER 191
Query: 216 XXXXXXLLQPARKN-KIFVANLPSNINNSEFEELFARFGTI-----TSSSLVSDKHIG-- 267
A K ++ N +N NN+ F I T+ +L ++ ++
Sbjct: 192 HGTAAERFIAANKALNLYPLN-ENNNNNNVNPSPFTSSNDIPLTNNTTLNLTNNVYLNNT 250
Query: 268 -FIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKPGVSITNPTKAP 314
I+PK + +S + + + P + T S + +PT P
Sbjct: 251 IITNNIIPKLSNDTISPIMNNFYPPNPHQPTSSNYLQA-QVGHPTNIP 297
>UNIPROTKB|F1M3H8 [details] [associations]
symbol:F1M3H8 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0032496 GO:GO:0006954
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0070935
GeneTree:ENSGT00700000104255 IPI:IPI00777708
ProteinModelPortal:F1M3H8 PRIDE:F1M3H8 Ensembl:ENSRNOT00000061231
Uniprot:F1M3H8
Length = 194
Score = 159 (61.0 bits), Expect = 2.9e-11, P = 2.9e-11
Identities = 48/151 (31%), Positives = 73/151 (48%)
Query: 41 NLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKKARVEMNGHL 99
N++ S L F+ FGTL D V N + SR F + ++ EA A + + H
Sbjct: 15 NVQTS--ESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAA-MAASPHA 71
Query: 100 IGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIE 159
+ V ELK + K K+FV L V E +L HF +FG + +
Sbjct: 72 VDGNTV-----ELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGAVEK 126
Query: 160 VKIVRD-ENGKSKGFGFIQFFSYKAAEKAII 189
+I+ D ++GK +GFGF+ F S+ AA+KA +
Sbjct: 127 AEIIADKQSGKKRGFGFVYFQSHDAADKAAV 157
>UNIPROTKB|E2RJG5 [details] [associations]
symbol:CELF6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 OMA:MQHVAAF EMBL:AAEX03016277
EMBL:AAEX03016278 Ensembl:ENSCAFT00000028069 Uniprot:E2RJG5
Length = 427
Score = 127 (49.8 bits), Expect = 3.0e-11, Sum P(2) = 3.0e-11
Identities = 44/158 (27%), Positives = 81/158 (51%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L V + +D Q L F++FG + ++ V +++ +G A + + A KA+ +
Sbjct: 9 LFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDSALKAQSAL 68
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
H + P + +++KP S+ G E++ K+FV L + EE+++ F FG
Sbjct: 69 --HEQKTLPGMNRPIQVKPAA-SEGRG-EDR-----KLFVGMLGKQQGEEDVRRLFQPFG 119
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNG 193
+I E ++R +G SKG F++F S A+ AI ++G
Sbjct: 120 HIEECTVLRSPDGTSKGCAFVKFGSQGEAQAAIQSLHG 157
Score = 97 (39.2 bits), Expect = 3.0e-11, Sum P(2) = 3.0e-11
Identities = 25/78 (32%), Positives = 36/78 (46%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTM 284
+F+ +LP ++E + F FG + S+ + D K GF+ F P A A+ M
Sbjct: 344 LFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKCFGFVSFDNPTSAQTAIQAM 403
Query: 285 NGHVFKSKPLKVTLSGTK 302
NG K LKV L K
Sbjct: 404 NGFQIGMKRLKVQLKRPK 421
Score = 91 (37.1 bits), Expect = 3.4e-07, Sum P(2) = 3.4e-07
Identities = 21/63 (33%), Positives = 36/63 (57%)
Query: 126 KQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAA 184
K + K+FV + +DE++LK F +FG I E+ +++D G KG F+ + + +A
Sbjct: 2 KDHDAIKLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDSA 61
Query: 185 EKA 187
KA
Sbjct: 62 LKA 64
>UNIPROTKB|F1RKD1 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0040019 "positive regulation of embryonic development"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040019 OMA:VFREKNV
GeneTree:ENSGT00700000104575 EMBL:CT971483
Ensembl:ENSSSCT00000010816 Uniprot:F1RKD1
Length = 965
Score = 170 (64.9 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 43/159 (27%), Positives = 77/159 (48%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDE----SRGFAIIVFNTPAEAKKAR 92
L + NL S + L F K G ++ +++ KN S GF + + P +A+KA
Sbjct: 737 LFIKNLNFSTTEETLKGVFSKVGAVKSCSISKKKNKAGALLSMGFGFVEYKKPEQAQKAL 796
Query: 93 VEMNGHLI-GSK-PVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSH 150
++ GH++ G K V I+ KP + ++ K+ V+N+ D E++
Sbjct: 797 KQLQGHVVDGHKLEVRISERATKPAPTATRKKQVARKQTTSKILVRNIPFQADSREIREL 856
Query: 151 FIKFGNIIEVKIVRDENGKS--KGFGFIQFFSYKAAEKA 187
F FG + V++ + G +GFGF+ FF+ + A++A
Sbjct: 857 FSTFGELKTVRLPKKMTGTGTHRGFGFVDFFTKQDAKRA 895
Score = 158 (60.7 bits), Expect = 2.8e-08, P = 2.8e-08
Identities = 58/225 (25%), Positives = 103/225 (45%)
Query: 83 NTPAE-AKKARVE--MNGHLI--GSKPVIITFVELKPGQRSKPVGPEEKQYKKDK----- 132
+TPAE +K R+E G + G P + E S V EE++ ++++
Sbjct: 675 DTPAELTEKDRMEPETGGAPMPGGETPEVEKPTEGGADAASAKVEEEEEEEEEEEESLPG 734
Query: 133 --VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDEN--GK--SKGFGFIQFFSYKAAEK 186
+F+KNL + EE LK F K G + I + +N G S GFGF+++ + A+K
Sbjct: 735 CTLFIKNLNFSTTEETLKGVFSKVGAVKSCSISKKKNKAGALLSMGFGFVEYKKPEQAQK 794
Query: 187 AIIEMNGRMIQHNSTFVSLAEIXXXXXXXXXXXXXLLQPARKNKIFVANLPSNINNSEFE 246
A+ ++ G ++ + V ++E + + +KI V N+P ++ E
Sbjct: 795 ALKQLQGHVVDGHKLEVRISERATKPAPTATRKKQVARKQTTSKILVRNIPFQADSREIR 854
Query: 247 ELFARFGTITSSSLV-----SDKH--IGFIEFIMPKHATHAVSTM 284
ELF+ FG + + L + H GF++F + A A + +
Sbjct: 855 ELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFFTKQDAKRAFNAL 899
Score = 137 (53.3 bits), Expect = 3.2e-11, Sum P(2) = 3.2e-11
Identities = 42/149 (28%), Positives = 75/149 (50%)
Query: 64 VRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKP--- 120
+R+ RN + G+ + F++ E KKA ++ N +G + + + + P ++ P
Sbjct: 323 IRIVRNAHGNKTGYVFVDFSSEEEVKKA-LQCNREYMGGRYIEVFREKSIPTAKAPPKNS 381
Query: 121 --------VGP-EEKQYKKD--KVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NG 168
+G EE++ D ++FV+NL T EE+L+ F K+G + E+ D
Sbjct: 382 TKAWQGRTLGEHEEEEDLADSGRLFVRNLPYTSSEEDLEKLFSKYGPLSELHYPIDSLTK 441
Query: 169 KSKGFGFIQFFSYKAAEKAIIEMNGRMIQ 197
K KGF F+ F + A KA E++G++ Q
Sbjct: 442 KPKGFAFVTFMFPEHAVKAYAEVDGQVFQ 470
Score = 115 (45.5 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 30/100 (30%), Positives = 49/100 (49%)
Query: 226 ARKNKIFVANLPSNINNSEFEELFARFGTITS-----SSLVSD-KHIGFIEFIMPKHATH 279
A ++FV NLP + + E+LF+++G ++ SL K F+ F+ P+HA
Sbjct: 400 ADSGRLFVRNLPYTSSEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVK 459
Query: 280 AVSTMNGHVFKSKPLKVTLSGTKPGVSITNPTKAPKKPAY 319
A + ++G VF+ + L V S K S T P +Y
Sbjct: 460 AYAEVDGQVFQGRMLHVLPSTIKKEAS--EDTDTPGSSSY 497
Score = 95 (38.5 bits), Expect = 3.2e-11, Sum P(2) = 3.2e-11
Identities = 25/97 (25%), Positives = 45/97 (46%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSDKH---------IGFIEFIMPKHATHAV 281
+F+ NL + + +F++ G + S S+ K+ GF+E+ P+ A A+
Sbjct: 737 LFIKNLNFSTTEETLKGVFSKVGAVKSCSISKKKNKAGALLSMGFGFVEYKKPEQAQKAL 796
Query: 282 STMNGHVFKSKPLKVTLS--GTKPGVSITNPTKAPKK 316
+ GHV L+V +S TKP + T + +K
Sbjct: 797 KQLQGHVVDGHKLEVRISERATKPAPTATRKKQVARK 833
Score = 92 (37.4 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 21/65 (32%), Positives = 34/65 (52%)
Query: 132 KVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEM 191
++ VKNL + EE + F FG + + + ++GK + FGFI F S + A+ A+
Sbjct: 3 RLIVKNLPNGMKEERFRQLFTAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQTALNHF 62
Query: 192 NGRMI 196
N I
Sbjct: 63 NKSFI 67
Score = 78 (32.5 bits), Expect = 9.0e-05, Sum P(2) = 9.0e-05
Identities = 24/84 (28%), Positives = 36/84 (42%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L V NL + + F FGTL D + K+ + R F I F + EA+ A N
Sbjct: 4 LIVKNLPNGMKEERFRQLFTAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQTALNHFN 63
Query: 97 GHLIGSKPVIITFVELKPGQRSKP 120
I + + + F + G +KP
Sbjct: 64 KSFIDTSRITVEFCK-SFGDPTKP 86
>TAIR|locus:2202740 [details] [associations]
symbol:AT1G60000 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005739 "mitochondrion" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0019344 "cysteine biosynthetic process"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC005966 HOGENOM:HOG000276232 HSSP:P33240
EMBL:AF348590 EMBL:AY088142 EMBL:AK316953 IPI:IPI00532959
PIR:C96624 RefSeq:NP_176208.1 UniGene:At.17057
ProteinModelPortal:Q9ZUJ3 SMR:Q9ZUJ3 STRING:Q9ZUJ3 PRIDE:Q9ZUJ3
EnsemblPlants:AT1G60000.1 GeneID:842294 KEGG:ath:AT1G60000
TAIR:At1g60000 InParanoid:Q9ZUJ3 OMA:NVEDCNI PhylomeDB:Q9ZUJ3
ProtClustDB:CLSN2913540 ArrayExpress:Q9ZUJ3 Genevestigator:Q9ZUJ3
Uniprot:Q9ZUJ3
Length = 258
Score = 171 (65.3 bits), Expect = 3.3e-11, P = 3.3e-11
Identities = 51/191 (26%), Positives = 92/191 (48%)
Query: 19 DEGARSXXXXXXXXXXXXLHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKND-ESRGF 77
D+GA S L+ NL +VD+ L + F V V N++ +SRGF
Sbjct: 70 DDGA-SAVLDPPAAVNTKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGF 128
Query: 78 AIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKN 137
A + + + ++G + + + F + KP +P+ PE + K+FV N
Sbjct: 129 AFVTMSNVEDCNIIIDNLDGTEYLGRALKVNFAD-KPKPNKEPLYPETEH----KLFVGN 183
Query: 138 LVETVDEEELKSHFIKFGNIIEVKIVRD-ENGKSKGFGFIQFFSYKAAEKAIIEMNGRMI 196
L TV E L F + G+++ ++V D + G+S+G+GF+ + S E A+ ++G +
Sbjct: 184 LSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGFEL 243
Query: 197 QHNSTFVSLAE 207
+ + V+LA+
Sbjct: 244 EGRAIRVNLAQ 254
>UNIPROTKB|D4A7H4 [details] [associations]
symbol:Tia1 "Protein Tia1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00214634 ProteinModelPortal:D4A7H4
Ensembl:ENSRNOT00000023323 Uniprot:D4A7H4
Length = 281
Score = 173 (66.0 bits), Expect = 3.5e-11, P = 3.5e-11
Identities = 68/283 (24%), Positives = 117/283 (41%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK--NDESRGFAIIVFNTPAEAKKARVE 94
L+V NL V ++ F + G ++ ++ + ND + + F+ A A
Sbjct: 5 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP---YCFVEFHEHRHAAAALAA 61
Query: 95 MNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKF 154
MNG I K E+K + P ++ VFV +L + E++K+ F F
Sbjct: 62 MNGRKIMGK-------EVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPF 114
Query: 155 GNIIEVKIVRD-ENGKSKGFGFIQFFSYKAAEKAIIEMNG-----RMIQHN-STFVSLA- 206
G I + ++V+D GKSKG+GF+ FF+ AE AI +M G R I+ N +T A
Sbjct: 115 GRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAP 174
Query: 207 -EIXXXXXXXXXXXXXLLQPARKN-KIFVANLPSNINNSEFEELFARFGTITSSSLVSDK 264
+ Q + N ++ + S + + F+ FG I + DK
Sbjct: 175 KSTYESNTKQLSYDEVVSQSSPGNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDK 234
Query: 265 HIGFIE-------FIMPKHATHAVSTMNGHVFKSKPLKVTLSG 300
FI ++ P ++ NG + ++P ++G
Sbjct: 235 GYSFIRQTQSSAPWMGPNYSVPPPQGQNGGMLPNQPAGYRVAG 277
Score = 126 (49.4 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 47/197 (23%), Positives = 77/197 (39%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMN 192
++V NL V E + F + G K++ D G + F++F ++ A A+ MN
Sbjct: 5 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHAAAALAAMN 63
Query: 193 GRMIQHNSTFVSLAEIXXXXXXXXXXXXXLLQPARKNKIFVANLPSNINNSEFEELFARF 252
GR I V+ A +FV +L I + + FA F
Sbjct: 64 GRKIMGKEVKVNWATTPSSQKKDTSNHFH---------VFVGDLSPEITTEDIKAAFAPF 114
Query: 253 GTITSSSLVSD------KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKPGVS 306
G I+ + +V D K GF+ F A +A+ M G + ++ + KP
Sbjct: 115 GRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAP 174
Query: 307 ITNPTKAPKKPAYIDEV 323
+ K+ +Y DEV
Sbjct: 175 KSTYESNTKQLSY-DEV 190
>UNIPROTKB|F1ND14 [details] [associations]
symbol:CELF1 "CUGBP Elav-like family member 1" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0040018 "positive regulation of multicellular organism growth"
evidence=IEA] [GO:0042835 "BRE binding" evidence=IEA] [GO:0043484
"regulation of RNA splicing" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IEA] [GO:0006376 "mRNA splice site selection"
evidence=IEA] [GO:0007286 "spermatid development" evidence=IEA]
[GO:0031369 "translation initiation factor binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0040018 GO:GO:0043484 IPI:IPI00854332 GO:GO:0042835
GO:GO:0006376 GeneTree:ENSGT00560000076837 OMA:PTLYNQS
EMBL:AADN02033464 Ensembl:ENSGALT00000013143
Ensembl:ENSGALT00000038511 Uniprot:F1ND14
Length = 485
Score = 127 (49.8 bits), Expect = 3.5e-11, Sum P(2) = 3.5e-11
Identities = 37/143 (25%), Positives = 73/143 (51%)
Query: 55 FKKFGTLRDVRVARNKND---ESRGFAIIVFNTPAEAKKARVEMNGHLIGSK--PVIITF 109
F+++G + ++ V R+++ +S+G + F T +KA +E L K P +
Sbjct: 36 FEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYT----RKAALEAQNALHNMKILPGMHHP 91
Query: 110 VELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGK 169
+++KP K E++ K+F+ + + +E +++ F FG I E +I+R +G
Sbjct: 92 IQMKPADSEKNNAVEDR-----KLFIGMISKKCNENDIRVMFSPFGQIEECRILRGPDGL 146
Query: 170 SKGFGFIQFFSYKAAEKAIIEMN 192
S+G F+ F + A+ AI M+
Sbjct: 147 SRGCAFVTFTTRAMAQTAIKAMH 169
Score = 100 (40.3 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 22/76 (28%), Positives = 43/76 (56%)
Query: 122 GPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRD-ENGKSKGFGFIQFFS 180
G +++ + +F+ +L + +++L F+ FGN++ K+ D + SK FGF+ + +
Sbjct: 391 GSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDN 450
Query: 181 YKAAEKAIIEMNGRMI 196
+A+ AI MNG I
Sbjct: 451 PVSAQAAIQSMNGFQI 466
Score = 98 (39.6 bits), Expect = 3.5e-11, Sum P(2) = 3.5e-11
Identities = 23/78 (29%), Positives = 38/78 (48%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSDKH------IGFIEFIMPKHATHAVSTM 284
+F+ +LP + + ++F FG + S+ + DK GF+ + P A A+ +M
Sbjct: 402 LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSM 461
Query: 285 NGHVFKSKPLKVTLSGTK 302
NG K LKV L +K
Sbjct: 462 NGFQIGMKRLKVQLKRSK 479
Score = 83 (34.3 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 21/76 (27%), Positives = 38/76 (50%)
Query: 55 FKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH--LIG-SKPVIITFVE 111
F FG + + R+ R + SRG A + F T A A+ A M+ + G S P+++ F +
Sbjct: 128 FSPFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPIVVKFAD 187
Query: 112 LKPGQRSKPVGPEEKQ 127
+ + K + + +Q
Sbjct: 188 TQKDKEQKRIAQQLQQ 203
>UNIPROTKB|Q5F3T7 [details] [associations]
symbol:CELF1 "CUGBP Elav-like family member 1" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207
EMBL:AJ851563 EMBL:AB050497 IPI:IPI00581213 IPI:IPI00854332
RefSeq:NP_001012539.1 UniGene:Gga.14943 UniGene:Gga.56092
ProteinModelPortal:Q5F3T7 SMR:Q5F3T7 STRING:Q5F3T7 PRIDE:Q5F3T7
GeneID:373923 KEGG:gga:373923 CTD:10658 eggNOG:NOG251494
HOGENOM:HOG000004754 InParanoid:Q5F3T7 OrthoDB:EOG4N8R4X
NextBio:20813455 Uniprot:Q5F3T7
Length = 489
Score = 127 (49.8 bits), Expect = 3.6e-11, Sum P(2) = 3.6e-11
Identities = 37/143 (25%), Positives = 73/143 (51%)
Query: 55 FKKFGTLRDVRVARNKND---ESRGFAIIVFNTPAEAKKARVEMNGHLIGSK--PVIITF 109
F+++G + ++ V R+++ +S+G + F T +KA +E L K P +
Sbjct: 36 FEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYT----RKAALEAQNALHNMKILPGMHHP 91
Query: 110 VELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGK 169
+++KP K E++ K+F+ + + +E +++ F FG I E +I+R +G
Sbjct: 92 IQMKPADSEKNNAVEDR-----KLFIGMISKKCNENDIRVMFSPFGQIEECRILRGPDGL 146
Query: 170 SKGFGFIQFFSYKAAEKAIIEMN 192
S+G F+ F + A+ AI M+
Sbjct: 147 SRGCAFVTFTTRAMAQTAIKAMH 169
Score = 100 (40.3 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 22/76 (28%), Positives = 43/76 (56%)
Query: 122 GPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRD-ENGKSKGFGFIQFFS 180
G +++ + +F+ +L + +++L F+ FGN++ K+ D + SK FGF+ + +
Sbjct: 395 GSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDN 454
Query: 181 YKAAEKAIIEMNGRMI 196
+A+ AI MNG I
Sbjct: 455 PVSAQAAIQSMNGFQI 470
Score = 98 (39.6 bits), Expect = 3.6e-11, Sum P(2) = 3.6e-11
Identities = 23/78 (29%), Positives = 38/78 (48%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSDKH------IGFIEFIMPKHATHAVSTM 284
+F+ +LP + + ++F FG + S+ + DK GF+ + P A A+ +M
Sbjct: 406 LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSM 465
Query: 285 NGHVFKSKPLKVTLSGTK 302
NG K LKV L +K
Sbjct: 466 NGFQIGMKRLKVQLKRSK 483
Score = 83 (34.3 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 21/76 (27%), Positives = 38/76 (50%)
Query: 55 FKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGH--LIG-SKPVIITFVE 111
F FG + + R+ R + SRG A + F T A A+ A M+ + G S P+++ F +
Sbjct: 128 FSPFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPIVVKFAD 187
Query: 112 LKPGQRSKPVGPEEKQ 127
+ + K + + +Q
Sbjct: 188 TQKDKEQKRIAQQLQQ 203
>UNIPROTKB|Q5SZQ7 [details] [associations]
symbol:CELF3 "CUGBP Elav-like family member 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CH471121
HOVERGEN:HBG107646 KO:K13207 HOGENOM:HOG000004754 CTD:11189
EMBL:AL589765 UniGene:Hs.26047 PDB:2DNO PDBsum:2DNO GeneID:11189
KEGG:hsa:11189 HGNC:HGNC:11967 PharmGKB:PA36654 GenomeRNAi:11189
NextBio:42591 IPI:IPI00386736 RefSeq:NP_001166120.1 SMR:Q5SZQ7
STRING:Q5SZQ7 Ensembl:ENST00000290585 UCSC:uc009wmy.3
EvolutionaryTrace:Q5SZQ7 Uniprot:Q5SZQ7
Length = 415
Score = 114 (45.2 bits), Expect = 3.8e-11, Sum P(3) = 3.8e-11
Identities = 40/153 (26%), Positives = 78/153 (50%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L V + ++ + L F++FG + ++ V ++K +G A + + A KA+ +
Sbjct: 9 LFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSAL 68
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
H + P + +++KP S+ G E++ K+FV L + +E+++ F FG
Sbjct: 69 --HEQKTLPGMNRPIQVKPAD-SESRG-EDR-----KLFVGMLGKQQTDEDVRKMFEPFG 119
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAI 188
I E ++R +G SKG F++F ++ A+ AI
Sbjct: 120 TIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAI 152
Score = 103 (41.3 bits), Expect = 3.8e-11, Sum P(3) = 3.8e-11
Identities = 27/78 (34%), Positives = 37/78 (47%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTM 284
IF+ +LP +SE ++F FG + S+ + D K GF+ F P A A+ M
Sbjct: 332 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 391
Query: 285 NGHVFKSKPLKVTLSGTK 302
NG K LKV L K
Sbjct: 392 NGFQIGMKRLKVQLKRPK 409
Score = 88 (36.0 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 19/57 (33%), Positives = 35/57 (61%)
Query: 132 KVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKA 187
K+FV + ++E++LK F +FG I E+ +++D+ G KG F+ + + +A KA
Sbjct: 8 KLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKA 64
Score = 43 (20.2 bits), Expect = 3.8e-11, Sum P(3) = 3.8e-11
Identities = 7/29 (24%), Positives = 18/29 (62%)
Query: 176 IQFFSYKAAEKAIIEMNGRMIQHNSTFVS 204
+QF +Y A +A+++ ++ +S ++S
Sbjct: 199 LQFGAYSAYTQALMQQQAALVAAHSAYLS 227
>UNIPROTKB|I3LRH2 [details] [associations]
symbol:LOC100737210 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K11294
GeneTree:ENSGT00550000074656 OMA:RLEYSQS RefSeq:XP_003133770.2
Ensembl:ENSSSCT00000032422 GeneID:100519984 KEGG:ssc:100519984
Uniprot:I3LRH2
Length = 724
Score = 181 (68.8 bits), Expect = 4.3e-11, P = 4.3e-11
Identities = 71/258 (27%), Positives = 117/258 (45%)
Query: 53 NEFKK-FGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVE 111
+E K+ F ++R+ +K+ +S+G A I F T A+A+K E G I + + + +
Sbjct: 420 DELKEVFEDAVEIRLV-SKDGKSKGIAYIEFKTEADAEKTLEEKQGTEIDGRSISLYYTG 478
Query: 112 LKPGQRSKPVGPEEKQYK-KDKVFV-KNLVETVDEEELKSHFIKFGNIIEVKIVRDENGK 169
K GQ G + + + K V NL + EE L+ F K +K+ +++NGK
Sbjct: 479 EK-GQNQDFRGGKNSTWSGESKTLVLSNLAYSATEETLQEVFEK---ATFIKVPQNQNGK 534
Query: 170 SKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAEIXXXXXXXXXXXXXLLQPARKN 229
SKG+ FI+F S++ A++A+ N R I+ + + L QP++
Sbjct: 535 SKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARS-------QPSKT- 586
Query: 230 KIFVANLPSNINNSEFEELF---ARFGTITSSSLVSDKHIGFIEFIMPKHATHAVSTM-N 285
+FV L +E F R +T S K GF++F + A A M +
Sbjct: 587 -LFVKGLSEETTEETLKESFDGSIRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMED 645
Query: 286 GHVFKSKPLKVTLSGTKP 303
G + +K VTL KP
Sbjct: 646 GEIDGNK---VTLDWAKP 660
>UNIPROTKB|E1B8K2 [details] [associations]
symbol:CELF6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 GO:GO:0000381 OMA:MQHVAAF
EMBL:DAAA02027998 IPI:IPI00694457 ProteinModelPortal:E1B8K2
Ensembl:ENSBTAT00000018735 Uniprot:E1B8K2
Length = 482
Score = 127 (49.8 bits), Expect = 4.3e-11, Sum P(2) = 4.3e-11
Identities = 44/158 (27%), Positives = 81/158 (51%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L V + +D Q L F++FG + ++ V +++ +G A + + A KA+ +
Sbjct: 48 LFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDSALKAQSAL 107
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
H + P + +++KP S+ G E++ K+FV L + EE+++ F FG
Sbjct: 108 --HEQKTLPGMNRPIQVKPAA-SEGRG-EDR-----KLFVGMLGKQQGEEDVRRLFQPFG 158
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNG 193
+I E ++R +G SKG F++F S A+ AI ++G
Sbjct: 159 HIEECTVLRSPDGTSKGCAFVKFGSQGEAQAAIQSLHG 196
Score = 97 (39.2 bits), Expect = 4.3e-11, Sum P(2) = 4.3e-11
Identities = 25/78 (32%), Positives = 36/78 (46%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTM 284
+F+ +LP ++E + F FG + S+ + D K GF+ F P A A+ M
Sbjct: 399 LFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKCFGFVSFDNPTSAQTAIQAM 458
Query: 285 NGHVFKSKPLKVTLSGTK 302
NG K LKV L K
Sbjct: 459 NGFQIGMKRLKVQLKRPK 476
Score = 93 (37.8 bits), Expect = 3.0e-07, Sum P(2) = 3.0e-07
Identities = 26/77 (33%), Positives = 41/77 (53%)
Query: 112 LKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKS 170
L PG P P K + K+FV + +DE++LK F +FG I E+ +++D G
Sbjct: 32 LNPG----PAVPM-KDHDAIKLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLH 86
Query: 171 KGFGFIQFFSYKAAEKA 187
KG F+ + + +A KA
Sbjct: 87 KGCAFLTYCARDSALKA 103
>UNIPROTKB|F1SHM1 [details] [associations]
symbol:CELF6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 GO:GO:0000381 OMA:MQHVAAF
EMBL:CU012037 Ensembl:ENSSSCT00000002157 Uniprot:F1SHM1
Length = 482
Score = 127 (49.8 bits), Expect = 4.3e-11, Sum P(2) = 4.3e-11
Identities = 44/158 (27%), Positives = 81/158 (51%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L V + +D Q L F++FG + ++ V +++ +G A + + A KA+ +
Sbjct: 48 LFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDSALKAQSAL 107
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
H + P + +++KP S+ G E++ K+FV L + EE+++ F FG
Sbjct: 108 --HEQKTLPGMNRPIQVKPAA-SEGRG-EDR-----KLFVGMLGKQQGEEDVRRLFQPFG 158
Query: 156 NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMNG 193
+I E ++R +G SKG F++F S A+ AI ++G
Sbjct: 159 HIEECTVLRSPDGTSKGCAFVKFGSQGEAQAAIQSLHG 196
Score = 97 (39.2 bits), Expect = 4.3e-11, Sum P(2) = 4.3e-11
Identities = 25/78 (32%), Positives = 36/78 (46%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVSTM 284
+F+ +LP ++E + F FG + S+ + D K GF+ F P A A+ M
Sbjct: 399 LFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKCFGFVSFDNPTSAQTAIQAM 458
Query: 285 NGHVFKSKPLKVTLSGTK 302
NG K LKV L K
Sbjct: 459 NGFQIGMKRLKVQLKRPK 476
Score = 93 (37.8 bits), Expect = 3.0e-07, Sum P(2) = 3.0e-07
Identities = 26/77 (33%), Positives = 41/77 (53%)
Query: 112 LKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKS 170
L PG P P K + K+FV + +DE++LK F +FG I E+ +++D G
Sbjct: 32 LNPG----PAVPM-KDHDAIKLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLH 86
Query: 171 KGFGFIQFFSYKAAEKA 187
KG F+ + + +A KA
Sbjct: 87 KGCAFLTYCARDSALKA 103
>UNIPROTKB|A7MB95 [details] [associations]
symbol:CUGBP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043484 "regulation of RNA splicing" evidence=IEA]
[GO:0042835 "BRE binding" evidence=IEA] [GO:0040018 "positive
regulation of multicellular organism growth" evidence=IEA]
[GO:0031369 "translation initiation factor binding" evidence=IEA]
[GO:0007286 "spermatid development" evidence=IEA] [GO:0006376 "mRNA
splice site selection" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007286 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0040018 GO:GO:0043484 HOVERGEN:HBG107646
KO:K13207 CTD:10658 eggNOG:NOG251494 HOGENOM:HOG000004754
OrthoDB:EOG4N8R4X GO:GO:0042835 GO:GO:0006376
GeneTree:ENSGT00560000076837 OMA:PTLYNQS EMBL:DAAA02041602
EMBL:DAAA02041603 EMBL:DAAA02041604 EMBL:BC151433 IPI:IPI00824850
RefSeq:NP_001094682.1 UniGene:Bt.16531 SMR:A7MB95 STRING:A7MB95
Ensembl:ENSBTAT00000003274 GeneID:540475 KEGG:bta:540475
InParanoid:A7MB95 NextBio:20878658 Uniprot:A7MB95
Length = 486
Score = 126 (49.4 bits), Expect = 4.6e-11, Sum P(2) = 4.6e-11
Identities = 37/143 (25%), Positives = 72/143 (50%)
Query: 55 FKKFGTLRDVRVARNKND---ESRGFAIIVFNTPAEAKKARVEMNGHLIGSK--PVIITF 109
F+++G + ++ V R+++ +S+G + F T +KA +E L K P +
Sbjct: 36 FEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYT----RKAALEAQNALHNMKVLPGMHHP 91
Query: 110 VELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGK 169
+++KP K E++ K+F+ + + E +++ F FG I E +I+R +G
Sbjct: 92 IQMKPADSEKNNAVEDR-----KLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGL 146
Query: 170 SKGFGFIQFFSYKAAEKAIIEMN 192
S+G F+ F + A+ AI M+
Sbjct: 147 SRGCAFVTFTTRAMAQTAIKAMH 169
Score = 98 (39.6 bits), Expect = 4.6e-11, Sum P(2) = 4.6e-11
Identities = 23/78 (29%), Positives = 38/78 (48%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSDKH------IGFIEFIMPKHATHAVSTM 284
+F+ +LP + + ++F FG + S+ + DK GF+ + P A A+ +M
Sbjct: 403 LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSM 462
Query: 285 NGHVFKSKPLKVTLSGTK 302
NG K LKV L +K
Sbjct: 463 NGFQIGMKRLKVQLKRSK 480
Score = 94 (38.1 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 21/68 (30%), Positives = 40/68 (58%)
Query: 123 PEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENG---KSKGFGFIQFF 179
P++ K+FV + T E++L+ F ++G + E+ ++RD + +SKG F+ F+
Sbjct: 8 PDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFY 67
Query: 180 SYKAAEKA 187
+ KAA +A
Sbjct: 68 TRKAALEA 75
WARNING: HSPs involving 915 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.134 0.372 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 333 308 0.00078 116 3 11 22 0.43 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 1165
No. of states in DFA: 575 (61 KB)
Total size of DFA: 182 KB (2105 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 26.02u 0.08s 26.10t Elapsed: 00:00:18
Total cpu time: 26.13u 0.08s 26.21t Elapsed: 00:00:19
Start: Thu Aug 15 14:37:09 2013 End: Thu Aug 15 14:37:28 2013
WARNINGS ISSUED: 2